Citrus Sinensis ID: 020312

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------33
Protein Sequence
MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKVIIIMLIGFILIFLVRRILRFFLKHLSIQASHWWCYT
Secondary Structure (PSIPRED)
ccccccEEEEcccHHHHHHHHHHHHcccEEEccccccccccccEEEEHHHHHHHHcccccccccccccccccccccccHHHccccEEEEEcccccccEEEEEEcccEEEEEccccccccccHHHHHccccccHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHccccHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHccccccccEEEEcccccHHHHHHHHHHHHcccEEEcccccEEEEEcccccEEEEEcccEEEEEcEEEEcccccccccEEEcEEEEEEEEEEcccHHHHHHHcccccccEEEEc
Secondary Structure Prediction (SSPRO)
cccEEEEEEEcccHHHHHHHHHHHHccccEEEEccccccHHHcEEccHHHHHHHccccccccHHHccHHHccEEccccEEEcccHHHHHHHHHcHHHHccEEEccEEEEEEccEEEEccccHHHHHHcccccHHHHHHHHHHHHHHHHcccccHHHcccccccccEHHHHHHHccccHHHHHHHHHHcccccccHHHHcEHHHHHHHHHHHHHHHHHHcccccEEEEcccccHHHHHHHHHHHHcccccEccccccEEEEcEccEEEEEEEccEEEEEEEEEEcHHHcHHHEEEccEEEEEEEEEccccccEEccccEEEEcEEEEcc
Coil and Loop (DISEMBL)
MDEEYDVIVLGTGLKECIlsgllsvdglkvlhmdrndyyggesssLNLIQLWKRfrgneqppahlgssrdynvdmiPKFIIANGALVRVLIHTDVTKYLYfkavdgsfvynkgkvhkvpatdmealksPLMGIFEKRRARKFFIYVqdydendpkthegmdltRVTTRELIAkyglddntiDFIGHALalhrddrylnepaldTVKRMKLYAESIARfqggspyiyplyglgelPQAFARLSAVYggtymlnkpeckvefdeegkvvgvtsegetakckkvvcdpsylpnKVIIIMLIGFILIFLVRRILRFFLKHLSIQASHWWCYT
Flexible Loop (DISEMBL)
MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKvhkvpatdmealksPLMGIFEKRRARKFFIYvqdydendpkthegmdltrVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVgvtsegetakckkvvcdpsyLPNKVIIIMLIGFILIFLVRRILRFFLKHLsiqashwwcyt
Low Complexity Region (SEG)
MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKViiimligfiliflVRRILRFFLKHLSIQASHWWCYT
Disordered region (IsUnstruct)
****YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRG***********RDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDEN****HEGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKVIIIMLIGFILIFLVRRILRFFLKHLSIQASHWWCY*
Disordered Region (DISOPRED)
*DEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKVIIIMLIGFILIFLVRRILRF*****SIQA*HWWCYT
Disordered Region (DISEMBL)
MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKVIIIMLIGFILIFLVRRILRFFLKHLSIQASHWWCYT
Disordered Region (DISPRO)
*DEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKVIIIMLIGFILIFLVRRILRFFLKHLSIQASHWWCYT
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKVIIIMLIGFILIFLVRRILRFFLKHLSIQASHWWCYT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	328	2.2.26 [Sep-21-2011]
P50396	447	Rab GDP dissociation inhi	yes	no	0.884	0.648	0.638	1e-108
P50398	447	Rab GDP dissociation inhi	yes	no	0.884	0.648	0.638	1e-108
P60028	447	Rab GDP dissociation inhi	yes	no	0.884	0.648	0.641	1e-108
P31150	447	Rab GDP dissociation inhi	yes	no	0.884	0.648	0.641	1e-108
Q8HXX7	447	Rab GDP dissociation inhi	N/A	no	0.884	0.648	0.638	1e-108
Q7YQM0	447	Rab GDP dissociation inhi	N/A	no	0.884	0.648	0.638	1e-108
O97555	447	Rab GDP dissociation inhi	yes	no	0.884	0.648	0.634	1e-108
P21856	447	Rab GDP dissociation inhi	yes	no	0.884	0.648	0.638	1e-108
P50397	445	Rab GDP dissociation inhi	no	no	0.884	0.651	0.614	1e-105
Q6Q7J2	445	Rab GDP dissociation inhi	no	no	0.884	0.651	0.614	1e-105

>sp|P50396|GDIA_MOUSE Rab GDP dissociation inhibitor alpha OS=Mus musculus GN=Gdi1 PE=1 SV=3

 Score =  392 bits (1006), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 187/293 (63%), Positives = 240/293 (81%), Gaps = 3/293 (1%)

Query: 1   MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLN-LIQLWKRFRGNE 59
           MDEEYDVIVLGTGL ECILSG++SV+G KVLHMDRN YYGGESSS+  L +L+KRF+  E
Sbjct: 1   MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQILE 60

Query: 60  QPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVP 119
            PP  +G  RD+NVD+IPKF++ANG LV++L++T+VT+YL FK V+GSFVY  GK++KVP
Sbjct: 61  GPPESMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVP 120

Query: 120 ATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDN 179
           +T+ EAL S LMG+FEKRR RKF ++V ++DENDPKT EG+D    + R++  K+ L  +
Sbjct: 121 STETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQNTSMRDVYRKFDLGQD 180

Query: 180 TIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFA 239
            IDF GHALAL+R D YL++P L+T+ R+KLY+ES+AR+ G SPY+YPLYGLGELPQ FA
Sbjct: 181 VIDFTGHALALYRTDDYLDQPCLETINRIKLYSESLARY-GKSPYLYPLYGLGELPQGFA 239

Query: 240 RLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKV 292
           RLSA+YGGTYMLNKP   +   E GKVVGV SEGE A+CK+++CDPSY+P++V
Sbjct: 240 RLSAIYGGTYMLNKPVDDIIM-ENGKVVGVKSEGEVARCKQLICDPSYIPDRV 291

Regulates the GDP/GTP exchange reaction of most Rab proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP to them.
Mus musculus (taxid: 10090)

>sp|P50398|GDIA_RAT Rab GDP dissociation inhibitor alpha OS=Rattus norvegicus GN=Gdi1 PE=1 SV=1

 Score =  391 bits (1005), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 187/293 (63%), Positives = 240/293 (81%), Gaps = 3/293 (1%)

Query: 1   MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLN-LIQLWKRFRGNE 59
           MDEEYDVIVLGTGL ECILSG++SV+G KVLHMDRN YYGGESSS+  L +L+KRF+  E
Sbjct: 1   MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLE 60

Query: 60  QPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVP 119
            PP  +G  RD+NVD+IPKF++ANG LV++L++T+VT+YL FK V+GSFVY  GK++KVP
Sbjct: 61  GPPESMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVP 120

Query: 120 ATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDN 179
           +T+ EAL S LMG+FEKRR RKF ++V ++DENDPKT EG+D    + R++  K+ L  +
Sbjct: 121 STETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQTTSMRDVYRKFDLGQD 180

Query: 180 TIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFA 239
            IDF GHALAL+R D YL++P L+T+ R+KLY+ES+AR+ G SPY+YPLYGLGELPQ FA
Sbjct: 181 VIDFTGHALALYRTDDYLDQPCLETINRIKLYSESLARY-GKSPYLYPLYGLGELPQGFA 239

Query: 240 RLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKV 292
           RLSA+YGGTYMLNKP   +   E GKVVGV SEGE A+CK+++CDPSY+P++V
Sbjct: 240 RLSAIYGGTYMLNKPVDDIIM-ENGKVVGVKSEGEVARCKQLICDPSYIPDRV 291

Regulates the GDP/GTP exchange reaction of most Rab proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP to them.

Rattus norvegicus (taxid: 10116)

>sp|P60028|GDIA_PANTR Rab GDP dissociation inhibitor alpha OS=Pan troglodytes GN=GDI1 PE=2 SV=1

 Score =  391 bits (1005), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 188/293 (64%), Positives = 240/293 (81%), Gaps = 3/293 (1%)

Query: 1   MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLN-LIQLWKRFRGNE 59
           MDEEYDVIVLGTGL ECILSG++SV+G KVLHMDRN YYGGESSS+  L +L+KRF+  E
Sbjct: 1   MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLE 60

Query: 60  QPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVP 119
            PP  +G  RD+NVD+IPKF++ANG LV++L++T+VT+YL FK V+GSFVY  GK++KVP
Sbjct: 61  GPPESMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVP 120

Query: 120 ATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDN 179
           +T+ EAL S LMG+FEKRR RKF ++V ++DENDPKT EG+D    + R++  K+ L  +
Sbjct: 121 STETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQTTSMRDVYRKFDLGQD 180

Query: 180 TIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFA 239
            IDF GHALAL+R D YL++P L+TV R+KLY+ES+AR+ G SPY+YPLYGLGELPQ FA
Sbjct: 181 VIDFTGHALALYRTDDYLDQPCLETVNRIKLYSESLARY-GKSPYLYPLYGLGELPQGFA 239

Query: 240 RLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKV 292
           RLSA+YGGTYMLNKP   +   E GKVVGV SEGE A+CK+++CDPSY+P++V
Sbjct: 240 RLSAIYGGTYMLNKPVDDIIM-ENGKVVGVKSEGEVARCKQLICDPSYIPDRV 291

Regulates the GDP/GTP exchange reaction of most Rab proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP to them.

Pan troglodytes (taxid: 9598)

>sp|P31150|GDIA_HUMAN Rab GDP dissociation inhibitor alpha OS=Homo sapiens GN=GDI1 PE=1 SV=2

 Score =  391 bits (1005), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 188/293 (64%), Positives = 240/293 (81%), Gaps = 3/293 (1%)

Query: 1   MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLN-LIQLWKRFRGNE 59
           MDEEYDVIVLGTGL ECILSG++SV+G KVLHMDRN YYGGESSS+  L +L+KRF+  E
Sbjct: 1   MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLE 60

Query: 60  QPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVP 119
            PP  +G  RD+NVD+IPKF++ANG LV++L++T+VT+YL FK V+GSFVY  GK++KVP
Sbjct: 61  GPPESMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVP 120

Query: 120 ATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDN 179
           +T+ EAL S LMG+FEKRR RKF ++V ++DENDPKT EG+D    + R++  K+ L  +
Sbjct: 121 STETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQTTSMRDVYRKFDLGQD 180

Query: 180 TIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFA 239
            IDF GHALAL+R D YL++P L+TV R+KLY+ES+AR+ G SPY+YPLYGLGELPQ FA
Sbjct: 181 VIDFTGHALALYRTDDYLDQPCLETVNRIKLYSESLARY-GKSPYLYPLYGLGELPQGFA 239

Query: 240 RLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKV 292
           RLSA+YGGTYMLNKP   +   E GKVVGV SEGE A+CK+++CDPSY+P++V
Sbjct: 240 RLSAIYGGTYMLNKPVDDIIM-ENGKVVGVKSEGEVARCKQLICDPSYIPDRV 291

Regulates the GDP/GTP exchange reaction of most Rab proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP to them.

Homo sapiens (taxid: 9606)

>sp|Q8HXX7|GDIA_MACFA Rab GDP dissociation inhibitor alpha OS=Macaca fascicularis GN=GDI1 PE=2 SV=1

 Score =  391 bits (1004), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 187/293 (63%), Positives = 240/293 (81%), Gaps = 3/293 (1%)

Query: 1   MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLN-LIQLWKRFRGNE 59
           MDEEYDVIVLGTGL ECILSG++SV+G KVLHMDRN YYGGESSS+  L +L+KRF+  E
Sbjct: 1   MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLE 60

Query: 60  QPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVP 119
            PP  +G  RD+NVD+IPKF++ANG LV++L++T+VT+YL FK V+GSFVY  GK++KVP
Sbjct: 61  GPPESMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVP 120

Query: 120 ATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDN 179
           +T+ EAL S LMG+FEKRR RKF ++V ++DENDPKT EG+D    + R++  K+ L  +
Sbjct: 121 STETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQTTSMRDVYRKFDLGQD 180

Query: 180 TIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFA 239
            IDF GHALAL+R D YL++P L+T+ R+KLY+ES+AR+ G SPY+YPLYGLGELPQ FA
Sbjct: 181 VIDFTGHALALYRTDDYLDQPCLETINRIKLYSESLARY-GKSPYLYPLYGLGELPQGFA 239

Query: 240 RLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKV 292
           RLSA+YGGTYMLNKP   +   E GKVVGV SEGE A+CK+++CDPSY+P++V
Sbjct: 240 RLSAIYGGTYMLNKPVDDIIM-ENGKVVGVKSEGEVARCKQLICDPSYIPDRV 291

Regulates the GDP/GTP exchange reaction of most Rab proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP to them.

Macaca fascicularis (taxid: 9541)

>sp|Q7YQM0|GDIA_PONPY Rab GDP dissociation inhibitor alpha OS=Pongo pygmaeus GN=GDI1 PE=2 SV=1

 Score =  390 bits (1003), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 187/293 (63%), Positives = 240/293 (81%), Gaps = 3/293 (1%)

Query: 1   MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLN-LIQLWKRFRGNE 59
           MDEEYDVIVLGTGL ECILSG++SV+G KVLHMDRN YYGGESSS+  L +L+KRF+  E
Sbjct: 1   MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLE 60

Query: 60  QPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVP 119
            PP  +G  RD+NVD+IPKF++ANG LV++L++T+VT+YL FK V+GSFVY  GK++KVP
Sbjct: 61  GPPESMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVP 120

Query: 120 ATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDN 179
           +T+ EAL S LMG+FEKRR RKF ++V ++DENDPKT EG+D    + R++  K+ L  +
Sbjct: 121 STETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQTTSMRDVYRKFDLGQD 180

Query: 180 TIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFA 239
            IDF GHALAL+R D YL++P L+T+ R+KLY+ES+AR+ G SPY+YPLYGLGELPQ FA
Sbjct: 181 VIDFTGHALALYRTDDYLDQPCLETINRIKLYSESLARY-GKSPYLYPLYGLGELPQGFA 239

Query: 240 RLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKV 292
           RLSA+YGGTYMLNKP   +   E GKVVGV SEGE A+CK+++CDPSY+P++V
Sbjct: 240 RLSAIYGGTYMLNKPVDDIIM-ENGKVVGVKSEGEVARCKQLICDPSYIPDRV 291

Regulates the GDP/GTP exchange reaction of most Rab proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP to them.

Pongo pygmaeus (taxid: 9600)

>sp|O97555|GDIA_CANFA Rab GDP dissociation inhibitor alpha OS=Canis familiaris GN=GDI1 PE=2 SV=1

 Score =  390 bits (1003), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 186/293 (63%), Positives = 240/293 (81%), Gaps = 3/293 (1%)

Query: 1   MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLN-LIQLWKRFRGNE 59
           MDEEYDVIVLGTGL ECILSG++SV+G KVLHMDRN YYGGESSS+  L +L+KRF+  E
Sbjct: 1   MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLE 60

Query: 60  QPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVP 119
            PP  +G  RD+NVD+IPKF++ANG LV++L++T+VT+YL FK V+GSF+Y  GK++KVP
Sbjct: 61  GPPEAMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFIYKGGKIYKVP 120

Query: 120 ATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDN 179
           +T+ EAL S LMG+FEKRR RKF ++V ++DENDPKT EG+D    + R++  K+ L  +
Sbjct: 121 STETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQSTSMRDVYRKFDLGQD 180

Query: 180 TIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFA 239
            IDF GHALAL+R D YL++P L+T+ R+KLY+ES+AR+ G SPY+YPLYGLGELPQ FA
Sbjct: 181 VIDFTGHALALYRTDDYLDQPCLETINRIKLYSESLARY-GKSPYLYPLYGLGELPQGFA 239

Query: 240 RLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKV 292
           RLSA+YGGTYMLNKP   +   E GKVVGV SEGE A+CK+++CDPSY+P++V
Sbjct: 240 RLSAIYGGTYMLNKPVDDIIM-ENGKVVGVKSEGEVARCKQLICDPSYIPDRV 291

Regulates the GDP/GTP exchange reaction of most Rab proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP to them.

Canis familiaris (taxid: 9615)

>sp|P21856|GDIA_BOVIN Rab GDP dissociation inhibitor alpha OS=Bos taurus GN=GDI1 PE=1 SV=1

 Score =  390 bits (1003), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 187/293 (63%), Positives = 240/293 (81%), Gaps = 3/293 (1%)

Query: 1   MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLN-LIQLWKRFRGNE 59
           MDEEYDVIVLGTGL ECILSG++SV+G KVLHMDRN YYGGESSS+  L +L+KRF+  E
Sbjct: 1   MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLE 60

Query: 60  QPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVP 119
            PP  +G  RD+NVD+IPKF++ANG LV++L++T+VT+YL FK V+GSFVY  GK++KVP
Sbjct: 61  GPPETMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVP 120

Query: 120 ATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDN 179
           +T+ EAL S LMG+FEKRR RKF ++V ++DENDPKT EG+D    + R++  K+ L  +
Sbjct: 121 STETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQNTSMRDVYRKFDLGQD 180

Query: 180 TIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFA 239
            IDF GHALAL+R D YL++P L+T+ R+KLY+ES+AR+ G SPY+YPLYGLGELPQ FA
Sbjct: 181 VIDFTGHALALYRTDDYLDQPCLETINRIKLYSESLARY-GKSPYLYPLYGLGELPQGFA 239

Query: 240 RLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKV 292
           RLSA+YGGTYMLNKP   +   E GKVVGV SEGE A+CK+++CDPSY+P++V
Sbjct: 240 RLSAIYGGTYMLNKPVDDIIM-ENGKVVGVKSEGEVARCKQLICDPSYVPDRV 291

Regulates the GDP/GTP exchange reaction of most Rab proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP to them.

Bos taurus (taxid: 9913)

>sp|P50397|GDIB_BOVIN Rab GDP dissociation inhibitor beta OS=Bos taurus GN=GDI2 PE=2 SV=3

 Score =  383 bits (983), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 180/293 (61%), Positives = 238/293 (81%), Gaps = 3/293 (1%)

Query: 1   MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQ-LWKRFRGNE 59
           M+EEYDVIVLGTGL ECILSG++SV+G KVLHMDRN YYGGES+S+  ++ L+KRF+   
Sbjct: 1   MNEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESASITPLEDLYKRFKIPG 60

Query: 60  QPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVP 119
            PPA +G  RD+NVD+IPKF++ANG LV++L+ T+VT+YL FK  +GSFVY  GK++KVP
Sbjct: 61  APPASMGRGRDWNVDLIPKFLMANGQLVKMLLFTEVTRYLDFKVTEGSFVYKGGKIYKVP 120

Query: 120 ATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDN 179
           +T+ EAL S LMG+FEKRR RKF +YV ++DENDP+T EG+D  + + RE+  K+ L  +
Sbjct: 121 STEAEALASSLMGLFEKRRFRKFLVYVANFDENDPRTFEGIDPKKTSMREVYKKFDLGQD 180

Query: 180 TIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFA 239
            IDF GHALAL+R D YL++P  +T+ R+KLY+ES+AR+ G SPY+YPLYGLGELPQ FA
Sbjct: 181 VIDFTGHALALYRTDDYLDQPCCETINRIKLYSESLARY-GKSPYLYPLYGLGELPQGFA 239

Query: 240 RLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKV 292
           RLSA+YGGTYMLNKP  ++   + GKV+GV SEGE A+CK+++CDPSY+ ++V
Sbjct: 240 RLSAIYGGTYMLNKPIEEI-IMQNGKVIGVKSEGEIARCKQLICDPSYVKDRV 291

Regulates the GDP/GTP exchange reaction of most Rab proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP to them.

Bos taurus (taxid: 9913)

>sp|Q6Q7J2|GDIB_PIG Rab GDP dissociation inhibitor beta OS=Sus scrofa GN=GDI2 PE=2 SV=1

 Score =  381 bits (979), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 180/293 (61%), Positives = 236/293 (80%), Gaps = 3/293 (1%)

Query: 1   MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQ-LWKRFRGNE 59
           M+EEYDVIVLGTGL ECILSG++SV+G KVLHMDRN YYGGES+S+  ++ L+KRF    
Sbjct: 1   MNEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESASITPLEDLYKRFNIPG 60

Query: 60  QPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVP 119
            PPA +G  RD+NVD+IPKF++ANG LV++L+ T+VT+YL FK  +GSFVY  GK++KVP
Sbjct: 61  APPASMGRGRDWNVDLIPKFLMANGQLVKMLLFTEVTRYLDFKVTEGSFVYKGGKIYKVP 120

Query: 120 ATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDN 179
           +T+ EAL S LMG+FEKRR RKF +YV ++DENDP+T EG+D  +   RE+  K+ L  +
Sbjct: 121 STEAEALASSLMGLFEKRRFRKFLVYVANFDENDPRTFEGVDPKKTAMREVYKKFDLGQD 180

Query: 180 TIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFA 239
            IDF GHALAL+R D YL++P  +T+ R+KLY+ES+AR+ G SPY+YPLYGLGELPQ FA
Sbjct: 181 VIDFTGHALALYRTDDYLDQPCCETINRIKLYSESLARY-GKSPYLYPLYGLGELPQGFA 239

Query: 240 RLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKV 292
           RLSA+YGGTYMLNKP  ++   + GKV+GV SEGE A+CK+++CDPSY+ ++V
Sbjct: 240 RLSAIYGGTYMLNKPIEEI-IVQNGKVIGVKSEGEIARCKQLICDPSYVKDRV 291

Regulates the GDP/GTP exchange reaction of most Rab proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP to them.

Sus scrofa (taxid: 9823)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	328
2501850	444	GDP dissociation inhibitor [Nicotiana ta	0.890	0.657	0.948	1e-164
255545283	444	protein with unknown function [Ricinus c	0.890	0.657	0.945	1e-163
224117826	444	predicted protein [Populus trichocarpa]	0.890	0.657	0.938	1e-163
224815412	444	Rab GDP dissociation inhibitor [Nicotian	0.890	0.657	0.941	1e-163
82623395	444	GDP dissociation inhibitor 1-like [Solan	0.890	0.657	0.941	1e-162
156972239	444	GDP-dissociation inhibitor [Lupinus albu	0.890	0.657	0.938	1e-162
225434259	444	PREDICTED: rab GDP dissociation inhibito	0.890	0.657	0.931	1e-162
58465454	444	GDP dissociation inhibitor 1 [Solanum ch	0.890	0.657	0.938	1e-162
449442357	444	PREDICTED: rab GDP dissociation inhibito	0.890	0.657	0.928	1e-161
224095286	444	predicted protein [Populus trichocarpa]	0.890	0.657	0.934	1e-160

>gi|2501850|gb|AAB80717.1| GDP dissociation inhibitor [Nicotiana tabacum]

 Score =  583 bits (1504), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 277/292 (94%), Positives = 289/292 (98%)

Query: 1   MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQ 60
           MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGES+SLNL+QLWKRFRG+++
Sbjct: 1   MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESTSLNLVQLWKRFRGSDK 60

Query: 61  PPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPA 120
           PPA LGSSRD+NVDMIPKFI+ANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPA
Sbjct: 61  PPAELGSSRDFNVDMIPKFIMANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPA 120

Query: 121 TDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDNT 180
           TDMEALKSPLMGIFEKRRARKFFIYVQDY+E+DPKTHEGMDLTRVTTRELIAKYGLDDNT
Sbjct: 121 TDMEALKSPLMGIFEKRRARKFFIYVQDYNESDPKTHEGMDLTRVTTRELIAKYGLDDNT 180

Query: 181 IDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFAR 240
           +DFIGHALALHRDDRYL+EPA DTVKRMKLYAES+ARFQGGSPYIYPLYGLGELPQAFAR
Sbjct: 181 VDFIGHALALHRDDRYLDEPAQDTVKRMKLYAESLARFQGGSPYIYPLYGLGELPQAFAR 240

Query: 241 LSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKV 292
           LSAVYGGTYMLNKPECKVEFDEEGKV GVTSEGETAKCKKVVCDPSYLPNKV
Sbjct: 241 LSAVYGGTYMLNKPECKVEFDEEGKVCGVTSEGETAKCKKVVCDPSYLPNKV 292

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255545283|ref|XP_002513702.1| protein with unknown function [Ricinus communis] gi|223547153|gb|EEF48649.1| protein with unknown function [Ricinus communis]

 Score =  581 bits (1497), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 276/292 (94%), Positives = 288/292 (98%)

Query: 1   MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQ 60
           MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMD+NDYYGGES+SLNL QLWKRFRG+++
Sbjct: 1   MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDKNDYYGGESASLNLNQLWKRFRGSDK 60

Query: 61  PPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPA 120
           PPAHLGSSRDYNVDMIPKF++ANG LVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPA
Sbjct: 61  PPAHLGSSRDYNVDMIPKFMMANGNLVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPA 120

Query: 121 TDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDNT 180
           TDMEALKSPLMGIFEKRRARKFFIYVQDY+E+DPKTHEGMDLTRVTTRELIAKYGLDDNT
Sbjct: 121 TDMEALKSPLMGIFEKRRARKFFIYVQDYNESDPKTHEGMDLTRVTTRELIAKYGLDDNT 180

Query: 181 IDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFAR 240
           +DFIGHALALHRDDRYL+EPALDTV RMKLYAES+ARFQGGSPYIYPLYGLGELPQAFAR
Sbjct: 181 MDFIGHALALHRDDRYLDEPALDTVMRMKLYAESLARFQGGSPYIYPLYGLGELPQAFAR 240

Query: 241 LSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKV 292
           LSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNK 
Sbjct: 241 LSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKA 292

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224117826|ref|XP_002331641.1| predicted protein [Populus trichocarpa] gi|118484203|gb|ABK93982.1| unknown [Populus trichocarpa] gi|118487234|gb|ABK95445.1| unknown [Populus trichocarpa] gi|222874037|gb|EEF11168.1| predicted protein [Populus trichocarpa]

 Score =  580 bits (1495), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 274/292 (93%), Positives = 288/292 (98%)

Query: 1   MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQ 60
           MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGES+SLNLIQLWKRFRGN++
Sbjct: 1   MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESASLNLIQLWKRFRGNDK 60

Query: 61  PPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPA 120
           PPAHLGSSRDYNVDMIPKF++ANG LVRVLIHTDVTKYLYFKAVDG +V+NKGKVHKVPA
Sbjct: 61  PPAHLGSSRDYNVDMIPKFMMANGNLVRVLIHTDVTKYLYFKAVDGGYVFNKGKVHKVPA 120

Query: 121 TDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDNT 180
           TDMEALKSPLMG+FEKRRARKFFIYVQ+Y+++DPKTHEGMDLTRVTTRELIAKYGLDDNT
Sbjct: 121 TDMEALKSPLMGLFEKRRARKFFIYVQNYEDSDPKTHEGMDLTRVTTRELIAKYGLDDNT 180

Query: 181 IDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFAR 240
           IDFIGHALALHRDDRYLNEPALDTVKRMKLYAES+ARFQGGSPYIYPLYGLGELPQAFAR
Sbjct: 181 IDFIGHALALHRDDRYLNEPALDTVKRMKLYAESLARFQGGSPYIYPLYGLGELPQAFAR 240

Query: 241 LSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKV 292
           LSAVYGGTYMLNKPECKVEF+EEGKV GVTSEGETAKCKKVVCDPSYLPNK 
Sbjct: 241 LSAVYGGTYMLNKPECKVEFNEEGKVAGVTSEGETAKCKKVVCDPSYLPNKA 292

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224815412|gb|ACN65853.1| Rab GDP dissociation inhibitor [Nicotiana benthamiana]

 Score =  579 bits (1492), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 275/292 (94%), Positives = 288/292 (98%)

Query: 1   MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQ 60
           MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGES+SLNL+QLWKRFRG+++
Sbjct: 1   MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESTSLNLVQLWKRFRGSDK 60

Query: 61  PPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPA 120
           PPA LGSSRD+NVDMIPKFI+ANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKV KVPA
Sbjct: 61  PPAELGSSRDFNVDMIPKFIMANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVRKVPA 120

Query: 121 TDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDNT 180
           TDMEALKSPLMGIFEKRRARKFFIYVQDY+E+DPKTHEGMDLTRVTTRELIAKYGLDDNT
Sbjct: 121 TDMEALKSPLMGIFEKRRARKFFIYVQDYNESDPKTHEGMDLTRVTTRELIAKYGLDDNT 180

Query: 181 IDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFAR 240
           +DFIGHALALHRDDRYL+EPA DTVKRMKLYAES+ARFQGGSPYIYPLYGLGELPQAFAR
Sbjct: 181 VDFIGHALALHRDDRYLDEPAQDTVKRMKLYAESLARFQGGSPYIYPLYGLGELPQAFAR 240

Query: 241 LSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKV 292
           LSAVYGGTYMLNKPECKVEFDEEGKV GVTSEGETAKCKKVVCDPSYLP+KV
Sbjct: 241 LSAVYGGTYMLNKPECKVEFDEEGKVCGVTSEGETAKCKKVVCDPSYLPSKV 292

Source: Nicotiana benthamiana

Species: Nicotiana benthamiana

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|82623395|gb|ABB87112.1| GDP dissociation inhibitor 1-like [Solanum tuberosum]

 Score =  577 bits (1488), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 275/292 (94%), Positives = 287/292 (98%)

Query: 1   MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQ 60
           MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGES+SLNL+QLWKRFRG+++
Sbjct: 1   MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESTSLNLVQLWKRFRGSDK 60

Query: 61  PPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPA 120
           PPA LGSSRDYNVDMIPKFI+ANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPA
Sbjct: 61  PPAQLGSSRDYNVDMIPKFIMANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPA 120

Query: 121 TDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDNT 180
           TDMEALKSPLMGIFEKRRARKFFIYVQDY E+DPKTHEGMDLTRVT RELIAKYGLDDNT
Sbjct: 121 TDMEALKSPLMGIFEKRRARKFFIYVQDYKESDPKTHEGMDLTRVTARELIAKYGLDDNT 180

Query: 181 IDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFAR 240
           +DFIGHALALHRDDRYL++PALDTVKRMKLYAES+ARFQGGSPYIYPLYGLGELPQAFAR
Sbjct: 181 VDFIGHALALHRDDRYLDKPALDTVKRMKLYAESLARFQGGSPYIYPLYGLGELPQAFAR 240

Query: 241 LSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKV 292
           LSAVYGGTYML+KPECKVEFDEEGKV GVTSEGETAKCKKVVCDPSYL NKV
Sbjct: 241 LSAVYGGTYMLSKPECKVEFDEEGKVCGVTSEGETAKCKKVVCDPSYLNNKV 292

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|156972239|gb|ABU98948.1| GDP-dissociation inhibitor [Lupinus albus]

 Score =  577 bits (1487), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 274/292 (93%), Positives = 286/292 (97%)

Query: 1   MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQ 60
           MDEEYDVIVLGTGL ECILSGLLSVDGLKVLHMDRNDYYGGES+SLNLIQLWKRFRG+++
Sbjct: 1   MDEEYDVIVLGTGLXECILSGLLSVDGLKVLHMDRNDYYGGESTSLNLIQLWKRFRGDDK 60

Query: 61  PPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPA 120
           PP HLGSSRDYNVDM+PKF++ANG LVRVLIHTDVTKYLYFKAVDGSFV+NKGKVHKVPA
Sbjct: 61  PPPHLGSSRDYNVDMVPKFMMANGTLVRVLIHTDVTKYLYFKAVDGSFVFNKGKVHKVPA 120

Query: 121 TDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDNT 180
           TDMEALKSPLMGIFEKRRARKFFIYVQDYDE+DPKTHEGMDLTRVTTRELIAKYGLDDNT
Sbjct: 121 TDMEALKSPLMGIFEKRRARKFFIYVQDYDESDPKTHEGMDLTRVTTRELIAKYGLDDNT 180

Query: 181 IDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFAR 240
           IDFIGHA+ALHRDDRYLNEPALDTVKRMKLYAES+ARFQGGS YIYPLYGLGELPQ F R
Sbjct: 181 IDFIGHAIALHRDDRYLNEPALDTVKRMKLYAESLARFQGGSSYIYPLYGLGELPQGFVR 240

Query: 241 LSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKV 292
           LSAVYGGTYMLNKPECKV+FDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKV
Sbjct: 241 LSAVYGGTYMLNKPECKVKFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKV 292

Source: Lupinus albus

Species: Lupinus albus

Genus: Lupinus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225434259|ref|XP_002280606.1| PREDICTED: rab GDP dissociation inhibitor alpha [Vitis vinifera] gi|147840053|emb|CAN70679.1| hypothetical protein VITISV_044153 [Vitis vinifera] gi|296084382|emb|CBI24770.3| unnamed protein product [Vitis vinifera]

 Score =  576 bits (1485), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 272/292 (93%), Positives = 287/292 (98%)

Query: 1   MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQ 60
           MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRF+GN++
Sbjct: 1   MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFKGNDK 60

Query: 61  PPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPA 120
           PPA LGSSRDYNVDMIPKF++ANG LVRVLIHTDVTKYLYFKAVDGS+V+NKGKVHKVPA
Sbjct: 61  PPASLGSSRDYNVDMIPKFMMANGTLVRVLIHTDVTKYLYFKAVDGSYVFNKGKVHKVPA 120

Query: 121 TDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDNT 180
            D+EALKSPLMG+FEKRRARKFFI+VQDYDENDP+THEGMDLTRVTTRELIAKYGLDDNT
Sbjct: 121 NDVEALKSPLMGLFEKRRARKFFIFVQDYDENDPRTHEGMDLTRVTTRELIAKYGLDDNT 180

Query: 181 IDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFAR 240
           IDFIGHA+ALHRDD YLNEPA+DTVKRMKLY+ESIARFQGGSPYIYPLYGLGELPQAFAR
Sbjct: 181 IDFIGHAIALHRDDCYLNEPAIDTVKRMKLYSESIARFQGGSPYIYPLYGLGELPQAFAR 240

Query: 241 LSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKV 292
           LSAVYGGTYMLNKPECKVEFDEEGK VGVTSEGETA+CKKVVCDPSYLPNKV
Sbjct: 241 LSAVYGGTYMLNKPECKVEFDEEGKAVGVTSEGETARCKKVVCDPSYLPNKV 292

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|58465454|gb|AAW78520.1| GDP dissociation inhibitor 1 [Solanum chilense]

 Score =  576 bits (1484), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 274/292 (93%), Positives = 287/292 (98%)

Query: 1   MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQ 60
           MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGES+SLNL+QLWKRFRG+++
Sbjct: 1   MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESTSLNLVQLWKRFRGSDK 60

Query: 61  PPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPA 120
           PPA LGSSRDYNVDMIPKFI+ANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPA
Sbjct: 61  PPAQLGSSRDYNVDMIPKFIMANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPA 120

Query: 121 TDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDNT 180
           TDMEALKSPLMGIFEKRRARKFFIYVQDY E+DPKTHEGMDLTRVT RELIAKYGLDDNT
Sbjct: 121 TDMEALKSPLMGIFEKRRARKFFIYVQDYKESDPKTHEGMDLTRVTARELIAKYGLDDNT 180

Query: 181 IDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFAR 240
           +DFIGHALALHRDDRYL++PALDTVKRMKLYAES+ARFQGGSPYIYPLYGLGELP+AFAR
Sbjct: 181 VDFIGHALALHRDDRYLDKPALDTVKRMKLYAESLARFQGGSPYIYPLYGLGELPRAFAR 240

Query: 241 LSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKV 292
           LSAVYGGTYMLNKPECKV+FDEEGKV GVTSEGETAKCKKVVCDPSYL NKV
Sbjct: 241 LSAVYGGTYMLNKPECKVDFDEEGKVCGVTSEGETAKCKKVVCDPSYLNNKV 292

Source: Solanum chilense

Species: Solanum chilense

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449442357|ref|XP_004138948.1| PREDICTED: rab GDP dissociation inhibitor alpha-like [Cucumis sativus] gi|449522606|ref|XP_004168317.1| PREDICTED: rab GDP dissociation inhibitor alpha-like [Cucumis sativus]

 Score =  573 bits (1477), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 271/292 (92%), Positives = 287/292 (98%)

Query: 1   MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQ 60
           MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRG+++
Sbjct: 1   MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGDDK 60

Query: 61  PPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPA 120
           PPAHLGSSRDYNVDMIPKF++ANG LVRVLIHTDVTKYL FKAVDGS+VYNKGK+HKVPA
Sbjct: 61  PPAHLGSSRDYNVDMIPKFMMANGTLVRVLIHTDVTKYLSFKAVDGSYVYNKGKIHKVPA 120

Query: 121 TDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDNT 180
           TDMEALKSPLMG+FEKRRARKFFI+VQDYDE++PKTHEGMDL RVTT+ELIAKYGLDDNT
Sbjct: 121 TDMEALKSPLMGLFEKRRARKFFIFVQDYDESNPKTHEGMDLARVTTKELIAKYGLDDNT 180

Query: 181 IDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFAR 240
           IDFIGHALALHRDDRYL+ PALDTVKRMKLYAES+ARFQGGSPYIYPLYGLGELPQAFAR
Sbjct: 181 IDFIGHALALHRDDRYLDLPALDTVKRMKLYAESLARFQGGSPYIYPLYGLGELPQAFAR 240

Query: 241 LSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKV 292
           LSAVYGGTYMLNKPECKVEFD+EGKV+GVTSEGETAKCKKVVCDPSYL NKV
Sbjct: 241 LSAVYGGTYMLNKPECKVEFDDEGKVIGVTSEGETAKCKKVVCDPSYLSNKV 292

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224095286|ref|XP_002310371.1| predicted protein [Populus trichocarpa] gi|222853274|gb|EEE90821.1| predicted protein [Populus trichocarpa]

 Score =  572 bits (1473), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 273/292 (93%), Positives = 284/292 (97%)

Query: 1   MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQ 60
           MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGES+SLNLIQLWKRFRGN++
Sbjct: 1   MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESASLNLIQLWKRFRGNDK 60

Query: 61  PPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPA 120
           PPAHLGSSRDYNVDMIPKF++ANG LVRVLIHT+VTKYLYFKAVDGSFV NKGKVHKVPA
Sbjct: 61  PPAHLGSSRDYNVDMIPKFMMANGNLVRVLIHTNVTKYLYFKAVDGSFVLNKGKVHKVPA 120

Query: 121 TDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDNT 180
           TDMEALKSPLMGIFEKRRARK FIYV +Y+E+DPKTHEGMDLTRVTTRELIAK+GLDDNT
Sbjct: 121 TDMEALKSPLMGIFEKRRARKLFIYVHNYEESDPKTHEGMDLTRVTTRELIAKFGLDDNT 180

Query: 181 IDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFAR 240
           IDFIGHA+ALHRDDRYLNEPALDTV RMKLYAES ARFQGGSPYIYPLYGLGELPQAFAR
Sbjct: 181 IDFIGHAVALHRDDRYLNEPALDTVMRMKLYAESFARFQGGSPYIYPLYGLGELPQAFAR 240

Query: 241 LSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKV 292
           LSAVYGGTYMLNKPECKVEFDEEGKV GVTSEGETAKCKKVVCDPSYL NKV
Sbjct: 241 LSAVYGGTYMLNKPECKVEFDEEGKVAGVTSEGETAKCKKVVCDPSYLLNKV 292

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	328
TAIR|locus:2144741	445	GDI "RAB GDP-dissociation inhi	0.890	0.656	0.849	3.2e-136
TAIR|locus:2051839	445	GDI1 "guanosine nucleotide dip	0.890	0.656	0.856	4.7e-135
TAIR|locus:2080527	444	GDI2 "RAB GDP dissociation inh	0.890	0.657	0.845	1.2e-134
DICTYBASE|DDB_G0268034	454	DDB_G0268034 "Rab GDP dissocia	0.884	0.638	0.683	3.9e-108
UNIPROTKB|P31150	447	GDI1 "Rab GDP dissociation inh	0.884	0.648	0.641	6.2e-101
UNIPROTKB|P60028	447	GDI1 "Rab GDP dissociation inh	0.884	0.648	0.641	6.2e-101
MGI|MGI:99846	447	Gdi1 "guanosine diphosphate (G	0.884	0.648	0.638	6.2e-101
UNIPROTKB|Q7YQM0	447	GDI1 "Rab GDP dissociation inh	0.884	0.648	0.638	7.9e-101
UNIPROTKB|Q8HXX7	447	GDI1 "Rab GDP dissociation inh	0.884	0.648	0.638	7.9e-101
RGD|2676	447	Gdi1 "GDP dissociation inhibit	0.884	0.648	0.638	7.9e-101

TAIR|locus:2144741 GDI "RAB GDP-dissociation inhibitor" [Arabidopsis thaliana (taxid:3702)]

 Score = 1334 (474.7 bits), Expect = 3.2e-136, P = 3.2e-136
 Identities = 248/292 (84%), Positives = 273/292 (93%)

Query:     1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQ 60
             MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNL QLWKRFRG++ 
Sbjct:     1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLTQLWKRFRGSDT 60

Query:    61 PPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPA 120
             P  +LG+SR+YNVDMIPKFI+ANG LV+ LIHTDVTKYL FKAVDGSFVY KGK++KVPA
Sbjct:    61 PEENLGASREYNVDMIPKFIMANGLLVQTLIHTDVTKYLNFKAVDGSFVYKKGKIYKVPA 120

Query:   121 TDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDNT 180
             TD+EALKSPLMG+FEKRRARKFFIYVQDYDE DPK+HEG+DL++VT RE+I+KYGL+D+T
Sbjct:   121 TDVEALKSPLMGLFEKRRARKFFIYVQDYDEKDPKSHEGLDLSKVTAREIISKYGLEDDT 180

Query:   181 IDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFAR 240
             IDFIGHALALH DD YL++PA+D VKR+KLYAES+ARFQGGSPYIYPLYGLGELPQAFAR
Sbjct:   181 IDFIGHALALHNDDDYLDQPAIDFVKRIKLYAESLARFQGGSPYIYPLYGLGELPQAFAR 240

Query:   241 LSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKV 292
             LSAVYGGTYMLNKPECKVEFD  GK +GVTS GETAKCKKVVCDPSYL  KV
Sbjct:   241 LSAVYGGTYMLNKPECKVEFDGSGKAIGVTSAGETAKCKKVVCDPSYLSEKV 292

GO:0005093 "Rab GDP-dissociation inhibitor activity" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0015031 "protein transport" evidence=IEA;ISS

GO:0048046 "apoplast" evidence=IDA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

TAIR|locus:2051839 GDI1 "guanosine nucleotide diphosphate dissociation inhibitor 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1323 (470.8 bits), Expect = 4.7e-135, P = 4.7e-135
 Identities = 250/292 (85%), Positives = 273/292 (93%)

Query:     1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQ 60
             MDEEY+VIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGES+SLNL QLWK+FRG E+
Sbjct:     1 MDEEYEVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESTSLNLNQLWKKFRGEEK 60

Query:    61 PPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPA 120
              PAHLGSSRDYNVDM+PKF++ANG LVRVLIHTDVTKYL FKAVDGS+V+ +GKV KVPA
Sbjct:    61 APAHLGSSRDYNVDMMPKFMMANGKLVRVLIHTDVTKYLSFKAVDGSYVFVQGKVQKVPA 120

Query:   121 TDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDNT 180
             T MEALKSPLMGIFEKRRA KFF YVQ+YDE DPKTH+GMDL RVTT++LIAK+GL ++T
Sbjct:   121 TPMEALKSPLMGIFEKRRAGKFFSYVQEYDEKDPKTHDGMDLRRVTTKDLIAKFGLKEDT 180

Query:   181 IDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFAR 240
             IDFIGHA+ALH +D +L++PA DTV RMKLYAES+ARFQGGSPYIYPLYGLGELPQAFAR
Sbjct:   181 IDFIGHAVALHCNDNHLHQPAYDTVMRMKLYAESLARFQGGSPYIYPLYGLGELPQAFAR 240

Query:   241 LSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKV 292
             LSAVYGGTYMLNKPECKVEFDEEGKV GVTSEGETAKCKKVVCDPSYL NKV
Sbjct:   241 LSAVYGGTYMLNKPECKVEFDEEGKVSGVTSEGETAKCKKVVCDPSYLTNKV 292

GO:0005093 "Rab GDP-dissociation inhibitor activity" evidence=IEA;IGI

GO:0005737 "cytoplasm" evidence=ISM

GO:0015031 "protein transport" evidence=IEA;ISS

GO:0005829 "cytosol" evidence=IDA

GO:0006487 "protein N-linked glycosylation" evidence=RCA

GO:0006623 "protein targeting to vacuole" evidence=RCA

GO:0016192 "vesicle-mediated transport" evidence=RCA

GO:0048227 "plasma membrane to endosome transport" evidence=IGI

TAIR|locus:2080527 GDI2 "RAB GDP dissociation inhibitor 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1319 (469.4 bits), Expect = 1.2e-134, P = 1.2e-134
 Identities = 247/292 (84%), Positives = 271/292 (92%)

Query:     1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQ 60
             MDEEY+VIVLGTGLKECILSGLLSVDG+KVLHMDRNDYYGGES+SLNL QLWK+FRG E+
Sbjct:     1 MDEEYEVIVLGTGLKECILSGLLSVDGVKVLHMDRNDYYGGESTSLNLNQLWKKFRGEEK 60

Query:    61 PPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPA 120
              P HLG+SRDYNVDM+PKF++ NG LVR LIHTDVTKYL FKAVDGS+V+ KGKV KVPA
Sbjct:    61 APEHLGASRDYNVDMMPKFMMGNGKLVRTLIHTDVTKYLSFKAVDGSYVFVKGKVQKVPA 120

Query:   121 TDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDNT 180
             T MEALKS LMGIFEKRRA KFF +VQ+YDE DPKTH+GMDLTRVTT+ELIAKYGLD NT
Sbjct:   121 TPMEALKSSLMGIFEKRRAGKFFSFVQEYDEKDPKTHDGMDLTRVTTKELIAKYGLDGNT 180

Query:   181 IDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFAR 240
             IDFIGHA+ALH +D++L++PA DTV RMKLYAES+ARFQG SPYIYPLYGLGELPQAFAR
Sbjct:   181 IDFIGHAVALHTNDQHLDQPAFDTVMRMKLYAESLARFQGTSPYIYPLYGLGELPQAFAR 240

Query:   241 LSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKV 292
             LSAVYGGTYMLNKPECKVEFDE GKV+GVTSEGETAKCKK+VCDPSYLPNKV
Sbjct:   241 LSAVYGGTYMLNKPECKVEFDEGGKVIGVTSEGETAKCKKIVCDPSYLPNKV 292

GO:0005093 "Rab GDP-dissociation inhibitor activity" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0015031 "protein transport" evidence=IEA;ISS

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0048046 "apoplast" evidence=IDA

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA

GO:0016192 "vesicle-mediated transport" evidence=RCA

GO:0016926 "protein desumoylation" evidence=RCA

GO:0042732 "D-xylose metabolic process" evidence=RCA

GO:0050665 "hydrogen peroxide biosynthetic process" evidence=RCA

GO:0051049 "regulation of transport" evidence=RCA

DICTYBASE|DDB_G0268034 DDB_G0268034 "Rab GDP dissociation inhibitor alpha" [Dictyostelium discoideum (taxid:44689)]

 Score = 1069 (381.4 bits), Expect = 3.9e-108, P = 3.9e-108
 Identities = 201/294 (68%), Positives = 246/294 (83%)

Query:     1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQ 60
             MDE YDVIVLGTGLKECI+SGLLSVDG KVLHMDRN YYGGES+SLN+ QLW++  G E+
Sbjct:     1 MDEHYDVIVLGTGLKECIISGLLSVDGKKVLHMDRNGYYGGESASLNMNQLWEKSHGKEK 60

Query:    61 P-PAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVP 119
               P  LGSSRDYNVD+IPKFI+++G LV++L+HTDVT+YL FK VDGS+VY+ GK++KVP
Sbjct:    61 KAPETLGSSRDYNVDLIPKFILSSGLLVKMLLHTDVTRYLDFKVVDGSYVYSSGKINKVP 120

Query:   120 ATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRE-LIAKYGLDD 178
             +TD EAL S L+G+ +K   RKFFI+VQ+Y+EN+P TH+G++L ++TT + L  KYGL +
Sbjct:   121 STDTEALTSSLVGLLDKLPLRKFFIFVQNYEENNPATHDGLNL-KITTMDALFKKYGLRE 179

Query:   179 NTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAF 238
             N +DFIGHALAL+ DD YL +PA DT+ RMKLYA+S+AR+   SPYIYPLYGLGELPQAF
Sbjct:   180 NIVDFIGHALALYLDDSYLQQPAHDTIMRMKLYADSLARYSK-SPYIYPLYGLGELPQAF 238

Query:   239 ARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKV 292
             ARLSA+YGGTYMLNKP   + FDEE K++ VTSEGET  C K+VCDPSY PNKV
Sbjct:   239 ARLSAIYGGTYMLNKPIENIVFDEEKKIIKVTSEGETVTCDKIVCDPSYFPNKV 292

GO:0015031 "protein transport" evidence=IEA

GO:0005093 "Rab GDP-dissociation inhibitor activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0044351 "macropinocytosis" evidence=RCA

UNIPROTKB|P31150 GDI1 "Rab GDP dissociation inhibitor alpha" [Homo sapiens (taxid:9606)]

 Score = 1001 (357.4 bits), Expect = 6.2e-101, P = 6.2e-101
 Identities = 188/293 (64%), Positives = 240/293 (81%)

Query:     1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLN-LIQLWKRFRGNE 59
             MDEEYDVIVLGTGL ECILSG++SV+G KVLHMDRN YYGGESSS+  L +L+KRF+  E
Sbjct:     1 MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLE 60

Query:    60 QPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVP 119
              PP  +G  RD+NVD+IPKF++ANG LV++L++T+VT+YL FK V+GSFVY  GK++KVP
Sbjct:    61 GPPESMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVP 120

Query:   120 ATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDN 179
             +T+ EAL S LMG+FEKRR RKF ++V ++DENDPKT EG+D    + R++  K+ L  +
Sbjct:   121 STETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQTTSMRDVYRKFDLGQD 180

Query:   180 TIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFA 239
              IDF GHALAL+R D YL++P L+TV R+KLY+ES+AR+ G SPY+YPLYGLGELPQ FA
Sbjct:   181 VIDFTGHALALYRTDDYLDQPCLETVNRIKLYSESLARY-GKSPYLYPLYGLGELPQGFA 239

Query:   240 RLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKV 292
             RLSA+YGGTYMLNKP   +   E GKVVGV SEGE A+CK+++CDPSY+P++V
Sbjct:   240 RLSAIYGGTYMLNKPVDDIIM-ENGKVVGVKSEGEVARCKQLICDPSYIPDRV 291

GO:0015031 "protein transport" evidence=IEA

GO:0005096 "GTPase activator activity" evidence=IEA

GO:0005093 "Rab GDP-dissociation inhibitor activity" evidence=IEA

GO:0017137 "Rab GTPase binding" evidence=IEA

GO:0043005 "neuron projection" evidence=IEA

GO:0043234 "protein complex" evidence=IEA

GO:0051592 "response to calcium ion" evidence=IEA

GO:0030496 "midbody" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0050771 "negative regulation of axonogenesis" evidence=ISS

GO:0005092 "GDP-dissociation inhibitor activity" evidence=TAS

GO:0007165 "signal transduction" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0007264 "small GTPase mediated signal transduction" evidence=TAS

GO:0051056 "regulation of small GTPase mediated signal transduction" evidence=TAS

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|P60028 GDI1 "Rab GDP dissociation inhibitor alpha" [Pan troglodytes (taxid:9598)]

 Score = 1001 (357.4 bits), Expect = 6.2e-101, P = 6.2e-101
 Identities = 188/293 (64%), Positives = 240/293 (81%)

Query:     1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLN-LIQLWKRFRGNE 59
             MDEEYDVIVLGTGL ECILSG++SV+G KVLHMDRN YYGGESSS+  L +L+KRF+  E
Sbjct:     1 MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLE 60

Query:    60 QPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVP 119
              PP  +G  RD+NVD+IPKF++ANG LV++L++T+VT+YL FK V+GSFVY  GK++KVP
Sbjct:    61 GPPESMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVP 120

Query:   120 ATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDN 179
             +T+ EAL S LMG+FEKRR RKF ++V ++DENDPKT EG+D    + R++  K+ L  +
Sbjct:   121 STETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQTTSMRDVYRKFDLGQD 180

Query:   180 TIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFA 239
              IDF GHALAL+R D YL++P L+TV R+KLY+ES+AR+ G SPY+YPLYGLGELPQ FA
Sbjct:   181 VIDFTGHALALYRTDDYLDQPCLETVNRIKLYSESLARY-GKSPYLYPLYGLGELPQGFA 239

Query:   240 RLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKV 292
             RLSA+YGGTYMLNKP   +   E GKVVGV SEGE A+CK+++CDPSY+P++V
Sbjct:   240 RLSAIYGGTYMLNKPVDDIIM-ENGKVVGVKSEGEVARCKQLICDPSYIPDRV 291

GO:0050771 "negative regulation of axonogenesis" evidence=ISS

MGI|MGI:99846 Gdi1 "guanosine diphosphate (GDP) dissociation inhibitor 1" [Mus musculus (taxid:10090)]

 Score = 1001 (357.4 bits), Expect = 6.2e-101, P = 6.2e-101
 Identities = 187/293 (63%), Positives = 240/293 (81%)

Query:     1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLN-LIQLWKRFRGNE 59
             MDEEYDVIVLGTGL ECILSG++SV+G KVLHMDRN YYGGESSS+  L +L+KRF+  E
Sbjct:     1 MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQILE 60

Query:    60 QPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVP 119
              PP  +G  RD+NVD+IPKF++ANG LV++L++T+VT+YL FK V+GSFVY  GK++KVP
Sbjct:    61 GPPESMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVP 120

Query:   120 ATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDN 179
             +T+ EAL S LMG+FEKRR RKF ++V ++DENDPKT EG+D    + R++  K+ L  +
Sbjct:   121 STETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQNTSMRDVYRKFDLGQD 180

Query:   180 TIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFA 239
              IDF GHALAL+R D YL++P L+T+ R+KLY+ES+AR+ G SPY+YPLYGLGELPQ FA
Sbjct:   181 VIDFTGHALALYRTDDYLDQPCLETINRIKLYSESLARY-GKSPYLYPLYGLGELPQGFA 239

Query:   240 RLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKV 292
             RLSA+YGGTYMLNKP   +   E GKVVGV SEGE A+CK+++CDPSY+P++V
Sbjct:   240 RLSAIYGGTYMLNKPVDDIIM-ENGKVVGVKSEGEVARCKQLICDPSYIPDRV 291

GO:0005093 "Rab GDP-dissociation inhibitor activity" evidence=ISO

GO:0005096 "GTPase activator activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0017137 "Rab GTPase binding" evidence=ISO

GO:0030496 "midbody" evidence=ISO

GO:0043005 "neuron projection" evidence=ISO

GO:0043234 "protein complex" evidence=ISO

GO:0050771 "negative regulation of axonogenesis" evidence=ISO

GO:0051592 "response to calcium ion" evidence=ISO

UNIPROTKB|Q7YQM0 GDI1 "Rab GDP dissociation inhibitor alpha" [Pongo pygmaeus (taxid:9600)]

 Score = 1000 (357.1 bits), Expect = 7.9e-101, P = 7.9e-101
 Identities = 187/293 (63%), Positives = 240/293 (81%)

Query:     1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLN-LIQLWKRFRGNE 59
             MDEEYDVIVLGTGL ECILSG++SV+G KVLHMDRN YYGGESSS+  L +L+KRF+  E
Sbjct:     1 MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLE 60

Query:    60 QPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVP 119
              PP  +G  RD+NVD+IPKF++ANG LV++L++T+VT+YL FK V+GSFVY  GK++KVP
Sbjct:    61 GPPESMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVP 120

Query:   120 ATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDN 179
             +T+ EAL S LMG+FEKRR RKF ++V ++DENDPKT EG+D    + R++  K+ L  +
Sbjct:   121 STETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQTTSMRDVYRKFDLGQD 180

Query:   180 TIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFA 239
              IDF GHALAL+R D YL++P L+T+ R+KLY+ES+AR+ G SPY+YPLYGLGELPQ FA
Sbjct:   181 VIDFTGHALALYRTDDYLDQPCLETINRIKLYSESLARY-GKSPYLYPLYGLGELPQGFA 239

Query:   240 RLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKV 292
             RLSA+YGGTYMLNKP   +   E GKVVGV SEGE A+CK+++CDPSY+P++V
Sbjct:   240 RLSAIYGGTYMLNKPVDDIIM-ENGKVVGVKSEGEVARCKQLICDPSYIPDRV 291

GO:0050771 "negative regulation of axonogenesis" evidence=ISS

UNIPROTKB|Q8HXX7 GDI1 "Rab GDP dissociation inhibitor alpha" [Macaca fascicularis (taxid:9541)]

 Score = 1000 (357.1 bits), Expect = 7.9e-101, P = 7.9e-101
 Identities = 187/293 (63%), Positives = 240/293 (81%)

Query:     1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLN-LIQLWKRFRGNE 59
             MDEEYDVIVLGTGL ECILSG++SV+G KVLHMDRN YYGGESSS+  L +L+KRF+  E
Sbjct:     1 MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLE 60

Query:    60 QPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVP 119
              PP  +G  RD+NVD+IPKF++ANG LV++L++T+VT+YL FK V+GSFVY  GK++KVP
Sbjct:    61 GPPESMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVP 120

Query:   120 ATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDN 179
             +T+ EAL S LMG+FEKRR RKF ++V ++DENDPKT EG+D    + R++  K+ L  +
Sbjct:   121 STETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQTTSMRDVYRKFDLGQD 180

Query:   180 TIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFA 239
              IDF GHALAL+R D YL++P L+T+ R+KLY+ES+AR+ G SPY+YPLYGLGELPQ FA
Sbjct:   181 VIDFTGHALALYRTDDYLDQPCLETINRIKLYSESLARY-GKSPYLYPLYGLGELPQGFA 239

Query:   240 RLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKV 292
             RLSA+YGGTYMLNKP   +   E GKVVGV SEGE A+CK+++CDPSY+P++V
Sbjct:   240 RLSAIYGGTYMLNKPVDDIIM-ENGKVVGVKSEGEVARCKQLICDPSYIPDRV 291

GO:0050771 "negative regulation of axonogenesis" evidence=ISS

RGD|2676 Gdi1 "GDP dissociation inhibitor 1" [Rattus norvegicus (taxid:10116)]

 Score = 1000 (357.1 bits), Expect = 7.9e-101, P = 7.9e-101
 Identities = 187/293 (63%), Positives = 240/293 (81%)

Query:     1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLN-LIQLWKRFRGNE 59
             MDEEYDVIVLGTGL ECILSG++SV+G KVLHMDRN YYGGESSS+  L +L+KRF+  E
Sbjct:     1 MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLE 60

Query:    60 QPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVP 119
              PP  +G  RD+NVD+IPKF++ANG LV++L++T+VT+YL FK V+GSFVY  GK++KVP
Sbjct:    61 GPPESMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVP 120

Query:   120 ATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDN 179
             +T+ EAL S LMG+FEKRR RKF ++V ++DENDPKT EG+D    + R++  K+ L  +
Sbjct:   121 STETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQTTSMRDVYRKFDLGQD 180

Query:   180 TIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFA 239
              IDF GHALAL+R D YL++P L+T+ R+KLY+ES+AR+ G SPY+YPLYGLGELPQ FA
Sbjct:   181 VIDFTGHALALYRTDDYLDQPCLETINRIKLYSESLARY-GKSPYLYPLYGLGELPQGFA 239

Query:   240 RLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKV 292
             RLSA+YGGTYMLNKP   +   E GKVVGV SEGE A+CK+++CDPSY+P++V
Sbjct:   240 RLSAIYGGTYMLNKPVDDIIM-ENGKVVGVKSEGEVARCKQLICDPSYIPDRV 291

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005093 "Rab GDP-dissociation inhibitor activity" evidence=IDA

GO:0005096 "GTPase activator activity" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IEA;ISO

GO:0015031 "protein transport" evidence=IEA

GO:0017137 "Rab GTPase binding" evidence=IPI

GO:0030496 "midbody" evidence=IEA;ISO

GO:0043005 "neuron projection" evidence=IDA

GO:0043234 "protein complex" evidence=IDA

GO:0050771 "negative regulation of axonogenesis" evidence=IDA

GO:0051592 "response to calcium ion" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P50398	GDIA_RAT	No assigned EC number	0.6382	0.8841	0.6487	yes	no
P50396	GDIA_MOUSE	No assigned EC number	0.6382	0.8841	0.6487	yes	no
P31150	GDIA_HUMAN	No assigned EC number	0.6416	0.8841	0.6487	yes	no
P39958	GDI1_YEAST	No assigned EC number	0.5439	0.8841	0.6430	yes	no
O97555	GDIA_CANFA	No assigned EC number	0.6348	0.8841	0.6487	yes	no
Q10305	GDI1_SCHPO	No assigned EC number	0.5924	0.8871	0.6613	yes	no
P21856	GDIA_BOVIN	No assigned EC number	0.6382	0.8841	0.6487	yes	no
P60028	GDIA_PANTR	No assigned EC number	0.6416	0.8841	0.6487	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pg.C_1700012 SubName- Full=Putative uncharacterized protein; (445 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	328
pfam00996	439	pfam00996, GDI, GDP dissociation inhibitor	0.0
PTZ00363	443	PTZ00363, PTZ00363, rab-GDP dissociation inhibitor	0.0
COG5044	434	COG5044, MRS6, RAB proteins geranylgeranyltransfer	1e-103

>gnl|CDD|216232 pfam00996, GDI, GDP dissociation inhibitor

 Score =  546 bits (1410), Expect = 0.0
 Identities = 216/293 (73%), Positives = 256/293 (87%), Gaps = 2/293 (0%)

Query: 1   MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNE- 59
           MDEEYDVIVLGTGLKECILSGLLSVDG KVLH+DRNDYYGGES+SL+L QL+ RFRG E 
Sbjct: 1   MDEEYDVIVLGTGLKECILSGLLSVDGKKVLHIDRNDYYGGESASLSLEQLYARFRGGEE 60

Query: 60  QPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVP 119
           +PP+ LG SRD+NVD+IPKF++ANG LV++LIHTDVT+YL FKAV+GS+VY  GK+HKVP
Sbjct: 61  KPPSKLGRSRDWNVDLIPKFLMANGELVKLLIHTDVTRYLEFKAVEGSYVYKGGKIHKVP 120

Query: 120 ATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDN 179
           A +MEAL SPLMGIFEKRR RKF  YVQDYDE+DPKTH+G+D  + T  E+  K+GLD+N
Sbjct: 121 ANEMEALSSPLMGIFEKRRFRKFLTYVQDYDEDDPKTHDGLDPRKRTMLEVYKKFGLDEN 180

Query: 180 TIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFA 239
           TIDFIGHALAL+RDD YLN+PAL TV+R+KLY+ES+AR+ G SPY+YPLYGLGELPQ FA
Sbjct: 181 TIDFIGHALALYRDDDYLNQPALPTVERIKLYSESLARY-GKSPYLYPLYGLGELPQGFA 239

Query: 240 RLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKV 292
           RLSA+YGGTYMLNKP  ++ +DE GKVVGV S GE A+ K+V+CDPSY P+KV
Sbjct: 240 RLSAIYGGTYMLNKPVDEIVYDENGKVVGVKSGGEVARAKQVICDPSYFPDKV 292

Length = 439

>gnl|CDD|185577 PTZ00363, PTZ00363, rab-GDP dissociation inhibitor; Provisional

 Score =  519 bits (1339), Expect = 0.0
 Identities = 197/294 (67%), Positives = 244/294 (82%), Gaps = 3/294 (1%)

Query: 1   MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQ 60
           MDE YDVIV GTGLKECILSGLLSV+G KVLHMDRN YYGGES+SLNL QL+K+F+  E 
Sbjct: 1   MDETYDVIVCGTGLKECILSGLLSVNGKKVLHMDRNPYYGGESASLNLTQLYKKFKPGET 60

Query: 61  PPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVY-NKGKVHKVP 119
           PP  LG +RD+NVD+IPKFI+A+G LV++L+HTDVT+YL FK +DGS+VY  +GK+HKVP
Sbjct: 61  PPESLGRNRDWNVDLIPKFIMASGELVKILLHTDVTRYLEFKVIDGSYVYQKEGKIHKVP 120

Query: 120 ATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDN 179
           ATDMEAL SPLMG FEK R + F  YV +YDENDP+TH+G++L  +T  +L  K+GL+DN
Sbjct: 121 ATDMEALSSPLMGFFEKNRCKNFLQYVSNYDENDPETHKGLNLKTMTMAQLYKKFGLEDN 180

Query: 180 TIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFA 239
           TIDF+GHA+AL+ +D YLN+PA++TV R+KLY +S++R+ G SP+IYPLYGLG LPQAF+
Sbjct: 181 TIDFVGHAVALYTNDDYLNKPAIETVMRIKLYMDSLSRY-GKSPFIYPLYGLGGLPQAFS 239

Query: 240 RLSAVYGGTYMLNKPECKVEFDEEGKVVGV-TSEGETAKCKKVVCDPSYLPNKV 292
           RL A+YGGTYMLN P  +V FDE GKV GV +  GE AKCK V+CDPSY P+KV
Sbjct: 240 RLCAIYGGTYMLNTPVDEVVFDENGKVCGVKSEGGEVAKCKLVICDPSYFPDKV 293

Length = 443

>gnl|CDD|227377 COG5044, MRS6, RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]

 Score =  309 bits (792), Expect = e-103
 Identities = 139/294 (47%), Positives = 182/294 (61%), Gaps = 9/294 (3%)

Query: 1   MDEE--YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGN 58
           MDEE  YDVI+LGTGL+E ILS  LS DG  VLH+D+NDYYG  S+SL L QL K F   
Sbjct: 1   MDEETLYDVIILGTGLRESILSAALSWDGKNVLHIDKNDYYGSTSASLTLTQLEKYFDEC 60

Query: 59  EQPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKV 118
           E+ P+  G  RD N+D+IPKF+ AN  L+++LI T VT+YL FK + GSF+Y  GK++KV
Sbjct: 61  EKRPSKGGGDRDLNIDLIPKFLFANSELLKILIETGVTEYLEFKQISGSFLYRPGKIYKV 120

Query: 119 PATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDD 178
           P  + E   SPL+ +FEKRR  +F  +V +Y E    T + +  ++ T   L  K+GL  
Sbjct: 121 PYNEAEIFTSPLLSLFEKRRVMRFLKWVSNYAE-QKSTLQELYESKDTMEFLFEKFGLSG 179

Query: 179 NTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAF 238
            T +FIGH +AL  D   L+ PA + ++R+  Y  S   + G SPY+YP YGLGEL Q F
Sbjct: 180 ATEEFIGHGIALSLD---LDIPAREALERILRYMRSFGDY-GKSPYLYPRYGLGELSQGF 235

Query: 239 ARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKV 292
           AR SAVYGGTYMLN+     E +E   V  V     T K  K++  P+Y     
Sbjct: 236 ARSSAVYGGTYMLNQA--IDEINETKDVETVDKGSLTQKAGKIISSPTYFREDS 287

Length = 434

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	328
PTZ00363	443	rab-GDP dissociation inhibitor; Provisional	100.0
PF00996	438	GDI: GDP dissociation inhibitor; InterPro: IPR0182	100.0
KOG1439	440	consensus RAB proteins geranylgeranyltransferase c	100.0
COG5044	434	MRS6 RAB proteins geranylgeranyltransferase compon	99.97
TIGR02734	502	crtI_fam phytoene desaturase. Phytoene is converte	99.95
COG1233	487	Phytoene dehydrogenase and related proteins [Secon	99.95
TIGR02733	492	desat_CrtD C-3',4' desaturase CrtD. Members of thi	99.94
TIGR02730	493	carot_isom carotene isomerase. Members of this fam	99.94
PRK12416	463	protoporphyrinogen oxidase; Provisional	99.94
PRK07233	434	hypothetical protein; Provisional	99.94
PRK07208	479	hypothetical protein; Provisional	99.93
COG1232	444	HemY Protoporphyrinogen oxidase [Coenzyme metaboli	99.93
PLN02576	496	protoporphyrinogen oxidase	99.93
TIGR00562	462	proto_IX_ox protoporphyrinogen oxidase. This prote	99.93
PRK11883	451	protoporphyrinogen oxidase; Reviewed	99.92
KOG4405	547	consensus GDP dissociation inhibitor [Signal trans	99.92
PLN02612	567	phytoene desaturase	99.92
TIGR02732	474	zeta_caro_desat carotene 7,8-desaturase. Carotene	99.9
TIGR02731	453	phytoene_desat phytoene desaturase. Plants and cya	99.89
PLN02487	569	zeta-carotene desaturase	99.88
COG1231	450	Monoamine oxidase [Amino acid transport and metabo	99.85
PLN02268	435	probable polyamine oxidase	99.84
PRK13977	576	myosin-cross-reactive antigen; Provisional	99.83
COG2907	447	Predicted NAD/FAD-binding protein [General functio	99.81
PLN02568	539	polyamine oxidase	99.81
PLN02676	487	polyamine oxidase	99.81
PLN02529	738	lysine-specific histone demethylase 1	99.8
PLN02328	808	lysine-specific histone demethylase 1 homolog	99.8
KOG0029	501	consensus Amine oxidase [Secondary metabolites bio	99.79
TIGR03467	419	HpnE squalene-associated FAD-dependent desaturase.	99.78
PLN03000	881	amine oxidase	99.75
KOG4254	561	consensus Phytoene desaturase [Coenzyme transport	99.74
KOG1276	491	consensus Protoporphyrinogen oxidase [Coenzyme tra	99.7
COG3349	485	Uncharacterized conserved protein [Function unknow	99.69
KOG0685	498	consensus Flavin-containing amine oxidase [Coenzym	99.68
PLN02976	1713	amine oxidase	99.66
PF01593	450	Amino_oxidase: Flavin containing amine oxidoreduct	99.6
PF01266	358	DAO: FAD dependent oxidoreductase; InterPro: IPR00	99.58
COG2081	408	Predicted flavoproteins [General function predicti	99.58
PF13450	68	NAD_binding_8: NAD(P)-binding Rossmann-like domain	99.57
COG0579	429	Predicted dehydrogenase [General function predicti	99.57
PF03486	409	HI0933_like: HI0933-like protein; InterPro: IPR004	99.57
PRK11728	393	hydroxyglutarate oxidase; Provisional	99.54
PRK00711	416	D-amino acid dehydrogenase small subunit; Validate	99.52
TIGR00031	377	UDP-GALP_mutase UDP-galactopyranose mutase. The ge	99.51
PRK08274	466	tricarballylate dehydrogenase; Validated	99.51
TIGR01377	380	soxA_mon sarcosine oxidase, monomeric form. Sarcos	99.51
TIGR03329	460	Phn_aa_oxid putative aminophosphonate oxidoreducta	99.5
TIGR01373	407	soxB sarcosine oxidase, beta subunit family, heter	99.46
PRK11101	546	glpA sn-glycerol-3-phosphate dehydrogenase subunit	99.46
PRK11259	376	solA N-methyltryptophan oxidase; Provisional	99.45
COG3380	331	Predicted NAD/FAD-dependent oxidoreductase [Genera	99.45
PRK12409	410	D-amino acid dehydrogenase small subunit; Provisio	99.44
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	99.41
PTZ00383	497	malate:quinone oxidoreductase; Provisional	99.41
KOG2820	399	consensus FAD-dependent oxidoreductase [General fu	99.39
COG0562	374	Glf UDP-galactopyranose mutase [Cell envelope biog	99.37
PRK10157	428	putative oxidoreductase FixC; Provisional	99.37
PRK06481	506	fumarate reductase flavoprotein subunit; Validated	99.36
PRK10015	429	oxidoreductase; Provisional	99.36
TIGR03364	365	HpnW_proposed FAD dependent oxidoreductase TIGR033	99.36
COG0665	387	DadA Glycine/D-amino acid oxidases (deaminating) [	99.35
PRK13369	502	glycerol-3-phosphate dehydrogenase; Provisional	99.35
PRK12266	508	glpD glycerol-3-phosphate dehydrogenase; Reviewed	99.35
TIGR01320	483	mal_quin_oxido malate:quinone-oxidoreductase. This	99.32
PRK05257	494	malate:quinone oxidoreductase; Validated	99.32
TIGR00292	254	thiazole biosynthesis enzyme. This enzyme is invol	99.31
PRK07121	492	hypothetical protein; Validated	99.3
PRK04176	257	ribulose-1,5-biphosphate synthetase; Provisional	99.3
TIGR01813	439	flavo_cyto_c flavocytochrome c. This model describ	99.29
PF00890	417	FAD_binding_2: FAD binding domain of the Pfam fami	99.28
PLN02464	627	glycerol-3-phosphate dehydrogenase	99.28
COG0578	532	GlpA Glycerol-3-phosphate dehydrogenase [Energy pr	99.28
PRK06175	433	L-aspartate oxidase; Provisional	99.28
COG0644	396	FixC Dehydrogenases (flavoproteins) [Energy produc	99.27
PF06100	500	Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross	99.26
PRK13339	497	malate:quinone oxidoreductase; Reviewed	99.25
PRK12845	564	3-ketosteroid-delta-1-dehydrogenase; Reviewed	99.24
PF00732	296	GMC_oxred_N: GMC oxidoreductase; InterPro: IPR0001	99.21
TIGR00275	400	flavoprotein, HI0933 family. The model when search	99.2
PRK08773	392	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	99.2
KOG2844	856	consensus Dimethylglycine dehydrogenase precursor	99.2
PRK08958	588	sdhA succinate dehydrogenase flavoprotein subunit;	99.19
PRK02106	560	choline dehydrogenase; Validated	99.18
PRK12834	549	putative FAD-binding dehydrogenase; Reviewed	99.18
PRK06847	375	hypothetical protein; Provisional	99.18
COG1635	262	THI4 Ribulose 1,5-bisphosphate synthetase, convert	99.18
PRK12844	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	99.18
PTZ00139	617	Succinate dehydrogenase [ubiquinone] flavoprotein	99.17
PRK06134	581	putative FAD-binding dehydrogenase; Reviewed	99.16
PRK09078	598	sdhA succinate dehydrogenase flavoprotein subunit;	99.14
PF01946	230	Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.	99.14
PRK06452	566	sdhA succinate dehydrogenase flavoprotein subunit;	99.14
PLN00128	635	Succinate dehydrogenase [ubiquinone] flavoprotein	99.14
PRK07057	591	sdhA succinate dehydrogenase flavoprotein subunit;	99.13
PRK07804	541	L-aspartate oxidase; Provisional	99.13
TIGR01812	566	sdhA_frdA_Gneg succinate dehydrogenase or fumarate	99.13
TIGR02485	432	CobZ_N-term precorrin 3B synthase CobZ. CobZ is es	99.13
PRK12843	578	putative FAD-binding dehydrogenase; Reviewed	99.12
PRK07190	487	hypothetical protein; Provisional	99.12
PRK12835	584	3-ketosteroid-delta-1-dehydrogenase; Reviewed	99.12
PRK07573	640	sdhA succinate dehydrogenase flavoprotein subunit;	99.12
PRK12837	513	3-ketosteroid-delta-1-dehydrogenase; Provisional	99.11
PRK05945	575	sdhA succinate dehydrogenase flavoprotein subunit;	99.11
TIGR00551	488	nadB L-aspartate oxidase. L-aspartate oxidase is t	99.11
TIGR01810	532	betA choline dehydrogenase. This enzyme is a membe	99.1
TIGR02032	295	GG-red-SF geranylgeranyl reductase family. This mo	99.1
PRK08163	396	salicylate hydroxylase; Provisional	99.1
PRK06069	577	sdhA succinate dehydrogenase flavoprotein subunit;	99.1
PRK12842	574	putative succinate dehydrogenase; Reviewed	99.09
PLN02661	357	Putative thiazole synthesis	99.09
PRK06185	407	hypothetical protein; Provisional	99.09
TIGR01988	385	Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub	99.09
PRK12839	572	hypothetical protein; Provisional	99.09
PRK07803	626	sdhA succinate dehydrogenase flavoprotein subunit;	99.08
PRK08205	583	sdhA succinate dehydrogenase flavoprotein subunit;	99.08
PRK08641	589	sdhA succinate dehydrogenase flavoprotein subunit;	99.07
PRK07395	553	L-aspartate oxidase; Provisional	99.07
PRK06184	502	hypothetical protein; Provisional	99.06
PRK08401	466	L-aspartate oxidase; Provisional	99.06
PRK09126	392	hypothetical protein; Provisional	99.05
PRK07333	403	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	99.05
PRK05714	405	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	99.05
PRK07045	388	putative monooxygenase; Reviewed	99.04
PRK08071	510	L-aspartate oxidase; Provisional	99.04
PRK08275	554	putative oxidoreductase; Provisional	99.04
PRK07608	388	ubiquinone biosynthesis hydroxylase family protein	99.03
PRK06854	608	adenylylsulfate reductase subunit alpha; Validated	99.03
PRK06834	488	hypothetical protein; Provisional	99.03
PRK07512	513	L-aspartate oxidase; Provisional	99.02
COG0654	387	UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and	99.01
PLN02815	594	L-aspartate oxidase	99.0
PTZ00306	1167	NADH-dependent fumarate reductase; Provisional	99.0
TIGR01984	382	UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T	99.0
PRK05192	618	tRNA uridine 5-carboxymethylaminomethyl modificati	98.99
PRK08626	657	fumarate reductase flavoprotein subunit; Provision	98.98
PRK06263	543	sdhA succinate dehydrogenase flavoprotein subunit;	98.98
PRK08244	493	hypothetical protein; Provisional	98.97
PRK08243	392	4-hydroxybenzoate 3-monooxygenase; Validated	98.94
TIGR02462	544	pyranose_ox pyranose oxidase. Pyranose oxidase (al	98.92
PRK07588	391	hypothetical protein; Provisional	98.91
TIGR01176	580	fum_red_Fp fumarate reductase, flavoprotein subuni	98.91
TIGR01811	603	sdhA_Bsu succinate dehydrogenase or fumarate reduc	98.91
PRK09231	582	fumarate reductase flavoprotein subunit; Validated	98.9
PLN02697	529	lycopene epsilon cyclase	98.89
PRK06183	538	mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Va	98.89
COG3573	552	Predicted oxidoreductase [General function predict	98.88
COG2303	542	BetA Choline dehydrogenase and related flavoprotei	98.87
PRK09077	536	L-aspartate oxidase; Provisional	98.87
PRK08132	547	FAD-dependent oxidoreductase; Provisional	98.86
TIGR03378	419	glycerol3P_GlpB glycerol-3-phosphate dehydrogenase	98.86
KOG0042	680	consensus Glycerol-3-phosphate dehydrogenase [Ener	98.83
PRK05329	422	anaerobic glycerol-3-phosphate dehydrogenase subun	98.82
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	98.81
PRK06475	400	salicylate hydroxylase; Provisional	98.8
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	98.78
PRK06116	450	glutathione reductase; Validated	98.78
TIGR02061	614	aprA adenosine phosphosulphate reductase, alpha su	98.77
PRK06370	463	mercuric reductase; Validated	98.76
PF01134	392	GIDA: Glucose inhibited division protein A; InterP	98.75
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	98.74
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	98.73
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	98.72
PRK09897	534	hypothetical protein; Provisional	98.71
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	98.71
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	98.7
PRK07364	415	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	98.7
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	98.7
PRK07494	388	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	98.69
PF01494	356	FAD_binding_3: FAD binding domain; InterPro: IPR00	98.69
KOG1399	448	consensus Flavin-containing monooxygenase [Seconda	98.69
PF06039	488	Mqo: Malate:quinone oxidoreductase (Mqo); InterPro	98.68
PLN02785	587	Protein HOTHEAD	98.67
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	98.66
PF04820	454	Trp_halogenase: Tryptophan halogenase; InterPro: I	98.66
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	98.66
PRK08850	405	2-octaprenyl-6-methoxyphenol hydroxylase; Validate	98.66
KOG2852	380	consensus Possible oxidoreductase [General functio	98.65
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	98.65
COG2072	443	TrkA Predicted flavoprotein involved in K+ transpo	98.64
PF13454	156	NAD_binding_9: FAD-NAD(P)-binding	98.64
PF12831	428	FAD_oxidored: FAD dependent oxidoreductase; PDB: 3	98.64
PRK08013	400	oxidoreductase; Provisional	98.64
KOG2404	477	consensus Fumarate reductase, flavoprotein subunit	98.63
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	98.63
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	98.62
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	98.62
PRK08849	384	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	98.61
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	98.6
KOG2665	453	consensus Predicted FAD-dependent oxidoreductase [	98.6
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	98.59
TIGR03315	1012	Se_ygfK putative selenate reductase, YgfK subunit.	98.58
PRK07236	386	hypothetical protein; Provisional	98.58
PRK12779	944	putative bifunctional glutamate synthase subunit b	98.58
TIGR02023	388	BchP-ChlP geranylgeranyl reductase. This model rep	98.57
PLN00093	450	geranylgeranyl diphosphate reductase; Provisional	98.56
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	98.56
COG0492	305	TrxB Thioredoxin reductase [Posttranslational modi	98.56
TIGR00136	617	gidA glucose-inhibited division protein A. GidA, t	98.55
TIGR02028	398	ChlP geranylgeranyl reductase. This model represen	98.55
PRK14694	468	putative mercuric reductase; Provisional	98.55
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	98.54
COG1148	622	HdrA Heterodisulfide reductase, subunit A and rela	98.54
PRK12831	464	putative oxidoreductase; Provisional	98.54
PTZ00052	499	thioredoxin reductase; Provisional	98.52
TIGR02360	390	pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase.	98.52
PRK05732	395	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	98.52
PRK08020	391	ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquin	98.51
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	98.51
PRK06753	373	hypothetical protein; Provisional	98.51
KOG2415	621	consensus Electron transfer flavoprotein ubiquinon	98.5
TIGR02053	463	MerA mercuric reductase. This model represents the	98.49
TIGR01790	388	carotene-cycl lycopene cyclase family protein. Thi	98.49
TIGR03197	381	MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouri	98.48
COG2509	486	Uncharacterized FAD-dependent dehydrogenases [Gene	98.47
PRK09853	1019	putative selenate reductase subunit YgfK; Provisio	98.47
PRK13748	561	putative mercuric reductase; Provisional	98.47
PLN02852	491	ferredoxin-NADP+ reductase	98.45
PRK07843	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	98.45
KOG1298	509	consensus Squalene monooxygenase [Lipid transport	98.45
PTZ00058	561	glutathione reductase; Provisional	98.45
PRK07538	413	hypothetical protein; Provisional	98.45
TIGR02352	337	thiamin_ThiO glycine oxidase ThiO. This family con	98.45
PRK06126	545	hypothetical protein; Provisional	98.45
PF00743	531	FMO-like: Flavin-binding monooxygenase-like; Inter	98.44
PRK06617	374	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	98.44
PLN02985	514	squalene monooxygenase	98.44
TIGR01989	437	COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. T	98.44
PRK14727	479	putative mercuric reductase; Provisional	98.43
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	98.43
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	98.42
KOG2614	420	consensus Kynurenine 3-monooxygenase and related f	98.42
PRK12775	1006	putative trifunctional 2-polyprenylphenol hydroxyl	98.41
PLN02507	499	glutathione reductase	98.41
PRK05868	372	hypothetical protein; Validated	98.4
PRK09564	444	coenzyme A disulfide reductase; Reviewed	98.4
PLN02463	447	lycopene beta cyclase	98.4
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	98.4
PRK08294	634	phenol 2-monooxygenase; Provisional	98.39
TIGR01789	370	lycopene_cycl lycopene cyclase. This model represe	98.39
PTZ00367	567	squalene epoxidase; Provisional	98.38
PRK10262	321	thioredoxin reductase; Provisional	98.38
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	98.38
PRK11445	351	putative oxidoreductase; Provisional	98.37
PLN02927	668	antheraxanthin epoxidase/zeaxanthin epoxidase	98.37
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	98.35
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	98.35
TIGR03219	414	salicylate_mono salicylate 1-monooxygenase. Member	98.35
TIGR01372	985	soxA sarcosine oxidase, alpha subunit family, hete	98.35
PLN02546	558	glutathione reductase	98.34
PRK05335	436	tRNA (uracil-5-)-methyltransferase Gid; Reviewed	98.33
PTZ00188	506	adrenodoxin reductase; Provisional	98.33
COG4716	587	Myosin-crossreactive antigen [Function unknown]	98.33
COG0029	518	NadB Aspartate oxidase [Coenzyme metabolism]	98.33
PRK06567	1028	putative bifunctional glutamate synthase subunit b	98.32
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	98.31
TIGR00137	433	gid_trmFO tRNA:m(5)U-54 methyltransferase. This mo	98.3
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	98.3
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	98.29
KOG1238	623	consensus Glucose dehydrogenase/choline dehydrogen	98.28
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	98.28
PF05834	374	Lycopene_cycl: Lycopene cyclase protein; InterPro:	98.28
PRK12814	652	putative NADPH-dependent glutamate synthase small	98.27
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	98.27
PTZ00153	659	lipoamide dehydrogenase; Provisional	98.26
COG1053	562	SdhA Succinate dehydrogenase/fumarate reductase, f	98.24
PRK06996	398	hypothetical protein; Provisional	98.23
PF07992	201	Pyr_redox_2: Pyridine nucleotide-disulphide oxidor	98.21
COG0493	457	GltD NADPH-dependent glutamate synthase beta chain	98.18
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	98.18
TIGR01317	485	GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal	98.17
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	98.15
PRK12770	352	putative glutamate synthase subunit beta; Provisio	98.13
COG3075	421	GlpB Anaerobic glycerol-3-phosphate dehydrogenase	98.12
KOG0399	2142	consensus Glutamate synthase [Amino acid transport	98.1
PRK14989	847	nitrite reductase subunit NirD; Provisional	98.09
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	98.08
PRK08255	765	salicylyl-CoA 5-hydroxylase; Reviewed	98.06
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	98.06
KOG2960	328	consensus Protein involved in thiamine biosynthesi	98.05
PRK07845	466	flavoprotein disulfide reductase; Reviewed	98.05
TIGR03377	516	glycerol3P_GlpA glycerol-3-phosphate dehydrogenase	98.02
PRK13984	604	putative oxidoreductase; Provisional	98.0
KOG1335	506	consensus Dihydrolipoamide dehydrogenase [Energy p	97.98
COG4529	474	Uncharacterized protein conserved in bacteria [Fun	97.97
PRK07846	451	mycothione reductase; Reviewed	97.86
KOG2853	509	consensus Possible oxidoreductase [General functio	97.86
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	97.83
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	97.62
PRK13512	438	coenzyme A disulfide reductase; Provisional	97.58
KOG1800	468	consensus Ferredoxin/adrenodoxin reductase [Nucleo	97.56
COG0445	621	GidA Flavin-dependent tRNA uridine 5-carboxymethyl	97.53
PF13434	341	K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi	97.48
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	97.45
PRK05675	570	sdhA succinate dehydrogenase flavoprotein subunit;	97.41
COG0446	415	HcaD Uncharacterized NAD(FAD)-dependent dehydrogen	97.32
KOG4716	503	consensus Thioredoxin reductase [Posttranslational	97.26
KOG0405	478	consensus Pyridine nucleotide-disulphide oxidoredu	97.26
COG1206	439	Gid NAD(FAD)-utilizing enzyme possibly involved in	97.24
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	97.18
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	97.12
TIGR03169	364	Nterm_to_SelD pyridine nucleotide-disulfide oxidor	97.09
KOG2311	679	consensus NAD/FAD-utilizing protein possibly invol	96.95
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	96.93
KOG3855	481	consensus Monooxygenase involved in coenzyme Q (ub	96.91
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	96.84
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	96.81
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	96.78
PRK02705	459	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.75
PF07156	368	Prenylcys_lyase: Prenylcysteine lyase; InterPro: I	96.72
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.68
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	96.67
KOG0404	322	consensus Thioredoxin reductase [Posttranslational	96.65
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	96.6
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	96.59
KOG3923	342	consensus D-aspartate oxidase [Amino acid transpor	96.59
COG3634	520	AhpF Alkyl hydroperoxide reductase, large subunit	96.58
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.55
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.54
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	96.52
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	96.5
KOG2755	334	consensus Oxidoreductase [General function predict	96.5
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	96.39
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	96.38
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	96.38
TIGR02053	463	MerA mercuric reductase. This model represents the	96.36
COG0569	225	TrkA K+ transport systems, NAD-binding component [	96.32
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	96.3
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	96.29
PRK07846	451	mycothione reductase; Reviewed	96.27
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	96.26
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	96.26
COG3486	436	IucD Lysine/ornithine N-monooxygenase [Secondary m	96.25
PRK06370	463	mercuric reductase; Validated	96.24
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	96.22
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	96.22
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	96.17
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	96.16
PRK13512	438	coenzyme A disulfide reductase; Provisional	96.13
TIGR03385	427	CoA_CoA_reduc CoA-disulfide reductase. Members of	96.12
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	96.12
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.1
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	96.1
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	96.09
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.07
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.07
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	96.05
TIGR03862	376	flavo_PP4765 uncharacterized flavoprotein, PP_4765	96.04
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	96.03
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	96.0
PRK08229	341	2-dehydropantoate 2-reductase; Provisional	95.99
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	95.94
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	95.92
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.89
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	95.87
PRK07845	466	flavoprotein disulfide reductase; Reviewed	95.83
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	95.83
cd05292	308	LDH_2 A subgroup of L-lactate dehydrogenases. L-la	95.79
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	95.76
PRK04148	134	hypothetical protein; Provisional	95.76
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	95.75
PRK09564	444	coenzyme A disulfide reductase; Reviewed	95.7
PTZ00153	659	lipoamide dehydrogenase; Provisional	95.67
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	95.66
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	95.6
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.57
PTZ00058	561	glutathione reductase; Provisional	95.54
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	95.52
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	95.51
PRK10262	321	thioredoxin reductase; Provisional	95.49
PRK14989	847	nitrite reductase subunit NirD; Provisional	95.47
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	95.41
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	95.4
TIGR01763	305	MalateDH_bact malate dehydrogenase, NAD-dependent.	95.38
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.37
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	95.36
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	95.33
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	95.31
PRK14620	326	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	95.27
PLN02546	558	glutathione reductase	95.22
COG0771	448	MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas	95.16
PRK14619	308	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	95.16
PRK00094	325	gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr	95.11
PRK12831	464	putative oxidoreductase; Provisional	95.11
KOG2304	298	consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t	95.09
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	95.09
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	95.09
KOG3851	446	consensus Sulfide:quinone oxidoreductase/flavo-bin	95.09
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	95.06
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	95.05
PTZ00082	321	L-lactate dehydrogenase; Provisional	95.02
PRK13748	561	putative mercuric reductase; Provisional	94.96
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	94.92
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	94.92
PRK12770	352	putative glutamate synthase subunit beta; Provisio	94.9
COG1893	307	ApbA Ketopantoate reductase [Coenzyme metabolism]	94.89
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	94.89
PRK06116	450	glutathione reductase; Validated	94.85
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	94.83
PRK14727	479	putative mercuric reductase; Provisional	94.83
PRK06719	157	precorrin-2 dehydrogenase; Validated	94.76
PRK07531	495	bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe	94.69
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	94.69
PRK07417	279	arogenate dehydrogenase; Reviewed	94.68
TIGR02279	503	PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa	94.68
PRK01710	458	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.66
PRK08268	507	3-hydroxy-acyl-CoA dehydrogenase; Validated	94.65
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	94.65
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	94.61
PRK15057	388	UDP-glucose 6-dehydrogenase; Provisional	94.52
TIGR01816	565	sdhA_forward succinate dehydrogenase, flavoprotein	94.5
PRK04690	468	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.49
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	94.44
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	94.43
PLN02353	473	probable UDP-glucose 6-dehydrogenase	94.43
KOG1336	478	consensus Monodehydroascorbate/ferredoxin reductas	94.41
PRK00421	461	murC UDP-N-acetylmuramate--L-alanine ligase; Provi	94.38
PRK04308	445	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.37
PF00056	141	Ldh_1_N: lactate/malate dehydrogenase, NAD binding	94.36
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	94.32
PRK07843	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	94.32
TIGR01915	219	npdG NADPH-dependent F420 reductase. This model re	94.25
PRK03369	488	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.2
PRK00066	315	ldh L-lactate dehydrogenase; Reviewed	94.17
PRK11730	715	fadB multifunctional fatty acid oxidation complex	94.1
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	94.07
PRK02472	447	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.04
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	94.03
TIGR02437	714	FadB fatty oxidation complex, alpha subunit FadB.	93.98
COG1250	307	FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo	93.96
cd05191	86	NAD_bind_amino_acid_DH NAD(P) binding domain of am	93.94
PRK11199	374	tyrA bifunctional chorismate mutase/prephenate deh	93.93
PRK00683	418	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.92
COG3634	520	AhpF Alkyl hydroperoxide reductase, large subunit	93.92
PRK06223	307	malate dehydrogenase; Reviewed	93.9
cd05293	312	LDH_1 A subgroup of L-lactate dehydrogenases. L-la	93.83
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	93.83
PLN02507	499	glutathione reductase	93.75
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	93.7
PRK03806	438	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.68
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	93.65
PRK14573	809	bifunctional D-alanyl-alanine synthetase A/UDP-N-a	93.64
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	93.57
PRK03803	448	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.55
TIGR02441	737	fa_ox_alpha_mit fatty acid oxidation complex, alph	93.49
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	93.44
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	93.44
PRK15116	268	sulfur acceptor protein CsdL; Provisional	93.43
PRK14694	468	putative mercuric reductase; Provisional	93.37
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	93.36
PRK08306	296	dipicolinate synthase subunit A; Reviewed	93.36
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	93.33
PRK02006	498	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.27
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	93.27
cd01339	300	LDH-like_MDH L-lactate dehydrogenase-like malate d	93.26
PRK00141	473	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.23
PRK01368	454	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.17
PF00670	162	AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase	93.13
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	93.13
PF13478	136	XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2	93.1
TIGR01505	291	tartro_sem_red 2-hydroxy-3-oxopropionate reductase	93.09
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	93.04
PTZ00117	319	malate dehydrogenase; Provisional	93.03
PRK11154	708	fadJ multifunctional fatty acid oxidation complex	93.03
TIGR02440	699	FadJ fatty oxidation complex, alpha subunit FadJ.	93.01
PRK09496	453	trkA potassium transporter peripheral membrane com	92.88
COG2084	286	MmsB 3-hydroxyisobutyrate dehydrogenase and relate	92.71
PRK12779	944	putative bifunctional glutamate synthase subunit b	92.7
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	92.65
PLN02695	370	GDP-D-mannose-3',5'-epimerase	92.64
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	92.64
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	92.62
PRK03815	401	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	92.59
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	92.57
PRK05442	326	malate dehydrogenase; Provisional	92.57
PRK01390	460	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	92.53
PRK15461	296	NADH-dependent gamma-hydroxybutyrate dehydrogenase	92.53
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	92.53
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	92.5
PRK06849	389	hypothetical protein; Provisional	92.5
TIGR00507	270	aroE shikimate 5-dehydrogenase. This model finds p	92.49
KOG2495	491	consensus NADH-dehydrogenase (ubiquinone) [Energy	92.44
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	92.4
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	92.39
PRK11559	296	garR tartronate semialdehyde reductase; Provisiona	92.39
TIGR00872	298	gnd_rel 6-phosphogluconate dehydrogenase (decarbox	92.29
TIGR02964	246	xanthine_xdhC xanthine dehydrogenase accessory pro	92.28
cd05290	307	LDH_3 A subgroup of L-lactate dehydrogenases. L-la	92.27
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	92.18
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	92.14
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	92.11
PRK08017	256	oxidoreductase; Provisional	92.01
PTZ00142	470	6-phosphogluconate dehydrogenase; Provisional	92.01
PTZ00052	499	thioredoxin reductase; Provisional	91.95
PRK12548	289	shikimate 5-dehydrogenase; Provisional	91.93
COG0287	279	TyrA Prephenate dehydrogenase [Amino acid transpor	91.93
PRK12814	652	putative NADPH-dependent glutamate synthase small	91.92
TIGR03376	342	glycerol3P_DH glycerol-3-phosphate dehydrogenase (	91.89
PRK09599	301	6-phosphogluconate dehydrogenase-like protein; Rev	91.84
TIGR01087	433	murD UDP-N-acetylmuramoylalanine--D-glutamate liga	91.8

>PTZ00363 rab-GDP dissociation inhibitor; Provisional

Probab=100.00  E-value=3.5e-43  Score=313.87  Aligned_cols=292  Identities=68%  Similarity=1.185  Sum_probs=265.2

Q ss_pred             CCCcccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCcccccchHHHHhhhcCCCCCCCccCCCCCeEEecCcceE
Q 020312            1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFI   80 (328)
Q Consensus         1 ~~~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~   80 (328)
                      |+++|||||||+|++|+++|..|+++|++|+++|++++.||+++|.+..+++..|..+..+|..+|....|++|+.|+++
T Consensus         1 m~~~~DViViGtGL~e~ilAa~Ls~~GkkVLhlD~n~~yGG~~as~~l~~l~~~f~~~~~~~~~~~~~r~~~iDL~Pk~l   80 (443)
T PTZ00363          1 MDETYDVIVCGTGLKECILSGLLSVNGKKVLHMDRNPYYGGESASLNLTQLYKKFKPGETPPESLGRNRDWNVDLIPKFI   80 (443)
T ss_pred             CCCcceEEEECCChHHHHHHhhhhhCCCEEEEecCCCCcCcccccccHHHHHHhhcccCCCchhcccccccccccCCeee
Confidence            88999999999999999999999999999999999999999999999999988888777788899999999999999999


Q ss_pred             ecCchHHHHHHhcCCCCeeEEEeeCceeEe-eCCeEEEcCCCchhhhcCCCCChhhHHHHHHHHHHHhhcccCCCccccc
Q 020312           81 IANGALVRVLIHTDVTKYLYFKAVDGSFVY-NKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEG  159 (328)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (328)
                      +..+.++..+.+.++.++++|+..+..+++ .+|+.+++|.+..+.+.++++++++|+.+.+|+.++.++...++..+..
T Consensus        81 ~~~G~lv~lL~~s~v~ryleF~~l~g~~v~~~~g~~~~vP~s~~~~~~s~ll~l~eKr~l~kfl~~v~~~~~~~~~~~~~  160 (443)
T PTZ00363         81 MASGELVKILLHTDVTRYLEFKVIDGSYVYQKEGKIHKVPATDMEALSSPLMGFFEKNRCKNFLQYVSNYDENDPETHKG  160 (443)
T ss_pred             ecCChHHHHHhhcCccceeeeEEeceEEEEecCCeEEECCCCHHHHhhCCCcchhhHHHHHHHHHHHHhhccCChhhhcc
Confidence            999999999999999999999999999998 8899999999899999999999999999999999998877655555555


Q ss_pred             ccCCCCCHHHHHHhcCCChhHHHHHhhhhhcccCCCCCCCchHHHHHHHHHHHHhhhcccCCCeEEeecCCcCcHHHHHH
Q 020312          160 MDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFA  239 (328)
Q Consensus       160 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~gG~~~l~~~l~  239 (328)
                      .+++..|+.+|++++++++..++++.+++++...+.+...+...++.++.++..++..+ |..++.+|.||++.|+++|+
T Consensus       161 ~~~d~~T~~d~L~~~~ls~~~~d~i~~~ial~~~~~~~~~pa~~tl~ri~~y~~S~~~~-g~~p~~yp~gG~g~L~qal~  239 (443)
T PTZ00363        161 LNLKTMTMAQLYKKFGLEDNTIDFVGHAVALYTNDDYLNKPAIETVMRIKLYMDSLSRY-GKSPFIYPLYGLGGLPQAFS  239 (443)
T ss_pred             cCcccCCHHHHHHHhCCCHHHHHHHHHHHHhhcccccccCCHHHHHHHHHHHHHHHhhc-cCCcceeeCCCHHHHHHHHH
Confidence            55678999999999999999999998888877666666667778888888999988888 77789999999999999999


Q ss_pred             HHHHHcCcEEEcCcceeEEEecCCCcEEEEEe-cCceEEcCEEEECCCCCcchhh
Q 020312          240 RLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLPNKVI  293 (328)
Q Consensus       240 ~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~-~g~~~~ad~vV~~~~~~~~~~~  293 (328)
                      +.++..|++++++++|++|+.++++++++|++ +|++++|+.||++++++|.+++
T Consensus       240 r~~a~~Gg~~~L~~~V~~I~~~~~g~~~~V~~~~Ge~i~a~~VV~~~s~~p~~~~  294 (443)
T PTZ00363        240 RLCAIYGGTYMLNTPVDEVVFDENGKVCGVKSEGGEVAKCKLVICDPSYFPDKVK  294 (443)
T ss_pred             HHHHHcCcEEEcCCeEEEEEEcCCCeEEEEEECCCcEEECCEEEECccccccccc
Confidence            99999999999999999999884567888888 8889999999999999988654

>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function

Probab=100.00  E-value=1.3e-40  Score=293.25  Aligned_cols=292  Identities=61%  Similarity=1.053  Sum_probs=248.5

Q ss_pred             CCCcccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCcccccchHHHHhhhcCCC-CCCCccCCCCCeEEecCcce
Q 020312            1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNE-QPPAHLGSSRDYNVDMIPKF   79 (328)
Q Consensus         1 ~~~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~   79 (328)
                      |+++|||||+|-|+.-...|..|++.|.+|+.+|++++-||..+|.++.++...+.... .++..+|..++|++|+.|++
T Consensus         1 m~~~yDviI~GTGl~esila~als~~GkkVLhiD~n~yYGg~~asl~l~~l~~~~~~~~~~~~~~~~~sR~ynIDL~PKl   80 (438)
T PF00996_consen    1 MDEEYDVIILGTGLTESILAAALSRSGKKVLHIDRNDYYGGEWASLNLDQLYEWFRPKQWTPPESLGRSRDYNIDLIPKL   80 (438)
T ss_dssp             --SBESEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSSCGGG-EE-HHHHHHHHCCTCCHHHHHHHTGGGC-EESS--B
T ss_pred             CCccceEEEECCCcHHHHHHHHHHhcCCEEEecCCCCCcCCchhcccHHHHHHHhhccccccccccccccceeEecchHh
Confidence            89999999999999999999999999999999999999999999999999988887652 33467888999999999999


Q ss_pred             EecCchHHHHHHhcCCCCeeEEEeeCceeEeeCCeEEEcCCCchhhhcCCCCChhhHHHHHHHHHHHhhcccCCCccccc
Q 020312           80 IIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEG  159 (328)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (328)
                      +++.+++++.+.++++.+|++|+..+..|++.+++..++|.++.+.|.+.++++++|+.+++|+.++.++.+..+..+..
T Consensus        81 l~a~g~LV~lLi~S~V~rYLEFk~V~~~~v~~~~~l~kVP~sr~dvf~s~~lsl~eKR~lmkFl~~v~~~~~~~~~~~~~  160 (438)
T PF00996_consen   81 LYARGPLVKLLISSGVTRYLEFKAVDGSYVYKNGKLHKVPCSREDVFKSKLLSLFEKRRLMKFLKFVANYEEDDPSTHKG  160 (438)
T ss_dssp             EETTSHHHHHHHHCTGGGGSEEEEESEEEEEETTEEEE--SSHHHHHC-TTS-HHHHHHHHHHHHHHHHGCTTBGGGSTT
T ss_pred             hhccCHHHHHHHhCCcccceEEEEcceeEEEeCCEEeeCCCCHHHhhcCCCccHHHHHHHHHHHHHHhhcccCCcchhhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999987766666677


Q ss_pred             ccCCCCCHHHHHHhcCCChhHHHHHhhhhhcccCCCCCCCchHHHHHHHHHHHHhhhcccCCCeEEeecCCcCcHHHHHH
Q 020312          160 MDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFA  239 (328)
Q Consensus       160 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~gG~~~l~~~l~  239 (328)
                      ++....++.++++++++++.+++++.+++++...+.+...|...++.++.+|..++++| |.+||.+|.+|.+.|+++++
T Consensus       161 ~~~~~~~~~e~~~~f~L~~~~~~~i~haiaL~~~~~~~~~p~~~~l~ri~~yl~Slgry-G~sPfLyP~YG~GELpQ~Fc  239 (438)
T PF00996_consen  161 LDPEKKTFQELLKKFGLSENLIDFIGHAIALSLDDSYLTEPAREGLERIKLYLSSLGRY-GKSPFLYPLYGLGELPQAFC  239 (438)
T ss_dssp             G-TTTSBHHHHHHHTTS-HHHHHHHHHHTS-SSSSGGGGSBSHHHHHHHHHHHHHHCCC-SSSSEEEETT-TTHHHHHHH
T ss_pred             cccccccHHHHHHhcCCCHHHHHHHHHhhhhccCcccccccHHHHHHHHHHHHHHHhcc-CCCCEEEEccCCccHHHHHH
Confidence            77788999999999999999999999999999887777778889999999999999999 88899999999999999999


Q ss_pred             HHHHHcCcEEEcCcceeEEEecCCCcEEEEEecCceEEcCEEEECCCCCcchhh
Q 020312          240 RLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKVI  293 (328)
Q Consensus       240 ~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~~g~~~~ad~vV~~~~~~~~~~~  293 (328)
                      |.+.-.|+.+.+|++|.+|..++++++++|.++|++++|+.||+.++++|.+++
T Consensus       240 Rl~AV~GG~Y~L~~~i~~i~~~~~g~~~gV~s~ge~v~~k~vI~dpsy~p~~v~  293 (438)
T PF00996_consen  240 RLSAVYGGTYMLNRPIDEIVVDEDGKVIGVKSEGEVVKAKKVIGDPSYLPEKVK  293 (438)
T ss_dssp             HHHHHTT-EEESS--EEEEEEETTTEEEEEEETTEEEEESEEEEEGGGBGCGEE
T ss_pred             HHhhhcCcEEEeCCccceeeeecCCeEEEEecCCEEEEcCEEEECCccCccccc
Confidence            999999999999999999999657889999999999999999999999886554

This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....

>KOG1439 consensus RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.7e-38  Score=266.61  Aligned_cols=293  Identities=67%  Similarity=1.140  Sum_probs=278.1

Q ss_pred             CCCcccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCcccccchHHHHhhhcCC-CCCCCccCCCCCeEEecCcce
Q 020312            1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGN-EQPPAHLGSSRDYNVDMIPKF   79 (328)
Q Consensus         1 ~~~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~   79 (328)
                      |+++|||+|+|-|+.-...+..|+..|.+|+.++++++-||..+|.+..+++..|+.+ +.+|...|..++|++|+.|.+
T Consensus         1 mdeeyDvivlGTgl~ecilS~~Ls~~gkkVLhiDrN~yYG~~sasltl~ql~~~f~~~~~~~~~~~~~~rd~nvDLiPK~   80 (440)
T KOG1439|consen    1 MDEEYDVIVLGTGLTECILSGALSVDGKKVLHIDRNDYYGGESASLTLEQLYKKFKKVSEKPPEKLGRDRDWNVDLIPKF   80 (440)
T ss_pred             CCCceeEEEEcCCchhheeeeeeeecCcEEEEEeCCCCCCccccceeHHHHHHHhccccccCccccccccccchhhchHh
Confidence            7889999999999999999999999999999999999999999999999999999955 788999999999999999999


Q ss_pred             EecCchHHHHHHhcCCCCeeEEEeeCceeEeeCCeEEEcCCCchhhhcCCCCChhhHHHHHHHHHHHhhcccCCCccccc
Q 020312           80 IIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEG  159 (328)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (328)
                      +++.++++.++.+.++.+||+|....+.+++.+|+.+++|..+.+.+.+.++++++|+..++|+.++..+.+..+..+..
T Consensus        81 lmAn~~Lvk~Li~T~V~~YL~fk~i~gsfv~~~~k~~KVP~t~~Ea~~s~lmgl~eKrr~~kFl~~V~n~~e~~~~~~~~  160 (440)
T KOG1439|consen   81 LMANGELVKILIHTGVTRYLEFKSISGSFVYKKGKIYKVPATEAEALTSPLMGLFEKRRVMKFLKFVLNYDEEDPKTWQG  160 (440)
T ss_pred             hhccchHHHHHHHhchhhheEEEeecceEEEECCeEEECCCCHHHHhcCCccchhHHHHHHHHHHHHhhhhhhccccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999888999999


Q ss_pred             ccCCCCCHHHHHHhcCCChhHHHHHhhhhhcccCCCCCCCchHHHHHHHHHHHHhhhcccCCCeEEeecCCcCcHHHHHH
Q 020312          160 MDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFA  239 (328)
Q Consensus       160 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~gG~~~l~~~l~  239 (328)
                      ++..+.++.+++.++++.....+++++++++...+.+.+.|...++.++.+|..++++| |.+++.+|.+|.+.|++.++
T Consensus       161 ~~~~k~tm~~~~~~~~l~~~~~~f~gh~~al~~dd~~ld~p~~~~~~ri~~Y~~S~~~y-g~~~ylyP~yGlgEL~QgFa  239 (440)
T KOG1439|consen  161 YDLSKDTMREFLGKFGLLEGTIDFIGHAIALLCDDSYLDQPAKETLERILLYVRSFARY-GKSPYLYPLYGLGELPQGFA  239 (440)
T ss_pred             cccccchHHHHHHHhcccccceeeeeeeeEEEecchhccCccHHHHHHHHHHHHHHhhc-CCCcceecccCcchhhHHHH
Confidence            88888899999999999999999999999888889999999999999999999999999 88889999999999999999


Q ss_pred             HHHHHcCcEEEcCcceeEEEecCCCcEEEEEecCceEEcCEEEECCCCCcchhhh
Q 020312          240 RLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKVII  294 (328)
Q Consensus       240 ~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~~g~~~~ad~vV~~~~~~~~~~~~  294 (328)
                      |...-.|+.+.+|.++.+|..+++++++++..+++...++.+|+.|++.|.++++
T Consensus       240 RlsAvyGgTYMLn~pi~ei~~~~~gk~igvk~~~~v~~~k~vi~dpSY~~~~~k~  294 (440)
T KOG1439|consen  240 RLSAVYGGTYMLNKPIDEINETKNGKVIGVKSGGEVAKCKKVICDPSYFPQKVKK  294 (440)
T ss_pred             HHhhccCceeecCCceeeeeccCCccEEEEecCCceeecceEEecCccchHHHHh
Confidence            9999999999999999999995588999999999999999999999999887765

>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=1.5e-30  Score=216.42  Aligned_cols=283  Identities=48%  Similarity=0.812  Sum_probs=251.1

Q ss_pred             CCCc--ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCcccccchHHHHhhhcCCCCCCCccCCCCCeEEecCcc
Q 020312            1 MDEE--YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPK   78 (328)
Q Consensus         1 ~~~~--~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~   78 (328)
                      |.+.  |||+|+|-|+.-...+..|+-+|.+|+++++++.-|+..+|.+..++..-|...+..|...+....|.+|+.|.
T Consensus         1 Md~~~~yDvii~GTgl~esils~~Ls~~~k~VlhiD~Nd~YG~~~asltl~ql~~~~~~~~~~p~k~~~drd~~iDL~PK   80 (434)
T COG5044           1 MDEETLYDVIILGTGLRESILSAALSWDGKNVLHIDKNDYYGSTSASLTLTQLEKYFDECEKRPSKGGGDRDLNIDLIPK   80 (434)
T ss_pred             CCccccccEEEecccHHHHHHHHHhhhcCceEEEEeCCCccCccccceeHHHHHHHhhhhhccccccccccccchhhchh
Confidence            4543  99999999999999999999999999999999999999999999998888888788899999999999999999


Q ss_pred             eEecCchHHHHHHhcCCCCeeEEEeeCceeEeeCCeEEEcCCCchhhhcCCCCChhhHHHHHHHHHHHhhcccCCCcccc
Q 020312           79 FIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHE  158 (328)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (328)
                      ++++.++++.++.+.++.+|+++....+.+.+.+++.+++|.++.+.+.++++++++|+...+|++|+..+.+ ....+.
T Consensus        81 ~l~A~s~l~~iLi~t~v~~YLefk~i~~~~~~~~~k~~kVP~ne~ei~~s~~lsL~eKr~vmrFl~~V~n~~~-~~~~~~  159 (434)
T COG5044          81 FLFANSELLKILIETGVTEYLEFKQISGSFLYRPGKIYKVPYNEAEIFTSPLLSLFEKRRVMRFLKWVSNYAE-QKSTLQ  159 (434)
T ss_pred             hhcccchHHHHHHHhChHhheeeeeccccEEecCCcEEECCccHHhhhcCCCcchhhHHHHHHHHHHHHhHHh-hhhhch
Confidence            9999999999999999999999999999999999999999999999999999999999999999999888876 444444


Q ss_pred             cccCCCCCHHHHHHhcCCChhHHHHHhhhhhcccCCCCCCCchHHHHHHHHHHHHhhhcccCCCeEEeecCCcCcHHHHH
Q 020312          159 GMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAF  238 (328)
Q Consensus       159 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~gG~~~l~~~l  238 (328)
                      .+..++.++....+.++++....++++++++++.+   .+.|...++.++.+|+++++.| |.+|+.+|+.|.+.|++.+
T Consensus       160 ~~~e~k~~~~~~~ekf~L~~~~~e~i~~~i~l~ld---l~~p~re~~erIl~Y~~Sf~~y-g~~pyLyp~YGl~El~QGF  235 (434)
T COG5044         160 ELYESKDTMEFLFEKFGLSGATEEFIGHGIALSLD---LDIPAREALERILRYMRSFGDY-GKSPYLYPRYGLGELSQGF  235 (434)
T ss_pred             hhhhcccHHHHHHHHHccCcchhhhhhhhhhhhcc---ccCCchHHHHHHHHHHHhhccc-CCCcceeeccCchhhhHHH
Confidence            54445667777889999999999999998887754   4557788899999999999999 8999999999999999999


Q ss_pred             HHHHHHcCcEEEcCcceeEEEecCCCcEEEEEecCceEEcCEEEECCCCCcc
Q 020312          239 ARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPN  290 (328)
Q Consensus       239 ~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~~g~~~~ad~vV~~~~~~~~  290 (328)
                      +|.+.-.|+.+.+|+++.+|... +. |.+|..+..+..|.++|..+++.+.
T Consensus       236 aRssav~GgtymLn~~i~ein~t-k~-v~~v~~~~~~~ka~KiI~~~~~~~~  285 (434)
T COG5044         236 ARSSAVYGGTYMLNQAIDEINET-KD-VETVDKGSLTQKAGKIISSPTYFRE  285 (434)
T ss_pred             HHhhhccCceeecCcchhhhccc-cc-eeeeecCcceeecCcccCCcccccc
Confidence            99999999999999999999865 32 4455557788999999998887643

>TIGR02734 crtI_fam phytoene desaturase

Probab=99.95  E-value=1.3e-26  Score=214.67  Aligned_cols=270  Identities=20%  Similarity=0.244  Sum_probs=173.7

Q ss_pred             EEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCcccccchHHHHhhhcCCCCCCCccCCCCCeEEecCcceEecCchH
Q 020312            7 VIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIANGAL   86 (328)
Q Consensus         7 vvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~   86 (328)
                      |||||||++||+||.+|+++|++|+|||+++++||+++|+..                    .+|.+|.|++++.....+
T Consensus         1 vvVIGaG~~GL~aA~~La~~G~~V~VlE~~~~~GG~~~t~~~--------------------~G~~fD~G~~~~~~~~~~   60 (502)
T TIGR02734         1 AVVIGAGFGGLALAIRLAAAGIPVTVVEQRDKPGGRAGVLED--------------------DGFRFDTGPTVITMPEAL   60 (502)
T ss_pred             CEEECcCHHHHHHHHHHHhCCCcEEEEECCCCCcCceEEEec--------------------CCeEEecCCeEEccccHH
Confidence            689999999999999999999999999999999999999865                    579999999998765433


Q ss_pred             HHHHHhcC--CCCeeEEEeeCceeEe--eCCeEEEcCCCchhhhcCCCCChh--hHHHHHHHHHHHhhccc--------C
Q 020312           87 VRVLIHTD--VTKYLYFKAVDGSFVY--NKGKVHKVPATDMEALKSPLMGIF--EKRRARKFFIYVQDYDE--------N  152 (328)
Q Consensus        87 ~~~~~~~~--~~~~l~~~~~~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~--------~  152 (328)
                      ...+...+  +.+++++...++.+.+  .+|..+.++.+ .+.+.+.+...+  +...+.+|.+.+++...        .
T Consensus        61 ~~l~~~lg~~l~~~l~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (502)
T TIGR02734        61 EELFALAGRDLADYVELVPLDPFYRLCWEDGSQLDVDND-QEELEAQIARFNPGDVAGYRRFLDYAERVYREGYRKLGYV  139 (502)
T ss_pred             HHHHHHcCCChhheEEEEECCCceEEECCCCCEEEecCC-HHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            33434443  3455666665555433  34667777643 443333222211  11223333333222110        0


Q ss_pred             CCc-c---------cccccCCCCCHHHHHHhcCCChhHHHHHhhhhhcccCCCCCCCchHHHHHHHHHHHHhhhcccCCC
Q 020312          153 DPK-T---------HEGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGS  222 (328)
Q Consensus       153 ~~~-~---------~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~  222 (328)
                      +.. .         .........|+.++++++.-++.++.++....... .......+...   .+..+    ..+  ..
T Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~l~~~~~~~-g~~p~~~~~~~---~l~~~----~~~--~~  209 (502)
T TIGR02734       140 PFLSPRDLLRADLPQLLALLAWRSLYSKVARFFSDERLRQAFSFHALFL-GGNPFRTPSIY---ALISA----LER--EW  209 (502)
T ss_pred             CCCCHHHHHhHhhHhhhhccCcCCHHHHHHhhcCCHHHHHHhcccceee-ccCcccchHHH---HHHHH----HHh--hc
Confidence            000 0         00112245788888888766666666554211111 11111111111   11111    111  23


Q ss_pred             eEEeecCCcCcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe-cCceEEcCEEEECCCC-------Ccc----
Q 020312          223 PYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSY-------LPN----  290 (328)
Q Consensus       223 ~~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~-~g~~~~ad~vV~~~~~-------~~~----  290 (328)
                      ..+++.||++.++++|.+.++++|++|+++++|++|..+ ++++++|++ ++++++||+||+++++       .++    
T Consensus       210 g~~~~~gG~~~l~~al~~~~~~~G~~i~~~~~V~~i~~~-~~~~~~V~~~~g~~~~ad~VI~a~~~~~~~~~l~~~~~~~  288 (502)
T TIGR02734       210 GVWFPRGGTGALVAAMAKLAEDLGGELRLNAEVIRIETE-GGRATAVHLADGERLDADAVVSNADLHHTYRRLLPNHPRR  288 (502)
T ss_pred             eEEEcCCCHHHHHHHHHHHHHHCCCEEEECCeEEEEEee-CCEEEEEEECCCCEEECCEEEECCcHHHHHHHhcCccccc
Confidence            456889999999999999999999999999999999988 788888888 6778999999998885       111    


Q ss_pred             -hh----hh--hccceeEEeeeehh
Q 020312          291 -KV----II--IMLIGFILIFLVRR  308 (328)
Q Consensus       291 -~~----~~--~~~~~~~~~~~~~~  308 (328)
                       +.    ++  ++.+++++|++++.
T Consensus       289 ~~~~~~~~~~~~s~s~~~~~lgl~~  313 (502)
T TIGR02734       289 RYPAARLSRKRPSPSLFVLYFGLLG  313 (502)
T ss_pred             cccccccccCCcCCeeeEEEEeecc
Confidence             11    12  58899999999983

Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.

>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.95  E-value=1.8e-26  Score=211.15  Aligned_cols=290  Identities=19%  Similarity=0.247  Sum_probs=175.1

Q ss_pred             CcccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCcccccchHHHHhhhcCCCCCCCccCCCCCeEEecCcceEec
Q 020312            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIA   82 (328)
Q Consensus         3 ~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~   82 (328)
                      +.+||||||||++||+||.+|+++|++|+||||++++||++++...                    .+|.+|.|++++..
T Consensus         2 ~~~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~~~GG~a~t~e~--------------------~Gf~fd~G~~~~~~   61 (487)
T COG1233           2 PMYDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRVGGRARTFEL--------------------DGFRFDTGPSWYLM   61 (487)
T ss_pred             CCccEEEECCChhHHHHHHHHHhCCCEEEEEEecCCCCcceEEEec--------------------cceEeccCcceeec
Confidence            4789999999999999999999999999999999999999999975                    47999999988877


Q ss_pred             CchHHHHHHhcC-CCCe-eEEEeeCceeEee--CCeEEEcCCCchhhhcCCCCCh--hhHHHHHHHHHHHhh----cccC
Q 020312           83 NGALVRVLIHTD-VTKY-LYFKAVDGSFVYN--KGKVHKVPATDMEALKSPLMGI--FEKRRARKFFIYVQD----YDEN  152 (328)
Q Consensus        83 ~~~~~~~~~~~~-~~~~-l~~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~----~~~~  152 (328)
                      .... ..+..++ ...+ +.+...++.+...  +|....+..+ .+.....+...  .+...+.++.....+    ....
T Consensus        62 ~~~~-~~~~~l~~l~~~~l~~~~~~~~~~~~~~~g~~~~~~~d-~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~  139 (487)
T COG1233          62 PDPG-PLFRELGNLDADGLDLLPPDPAYRVFLPDGDAIDVYTD-LEATAELLESLEPGDGEALARYLRLLARLYELLAAL  139 (487)
T ss_pred             CchH-HHHHHhccCcccceeeeccCCceeeecCCCCEEEecCC-HHHHHHHHHhhCcccHHHHHHHHHHHHHhhHHHHhh
Confidence            6442 3333333 3333 5555545555442  3556655532 43333222111  111122222222211    1110


Q ss_pred             --CCcccc------c-------ccCCCCCHHHHHHhcCCChhHHHHHhhhhhcccCCCCCCCch-HHHHHHHHHHHHhhh
Q 020312          153 --DPKTHE------G-------MDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPA-LDTVKRMKLYAESIA  216 (328)
Q Consensus       153 --~~~~~~------~-------~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~l~~~~~~~~~~~  216 (328)
                        .+....      .       ......++.+++....-++.++..+.......   .  ..|. ..++..+..   .. 
T Consensus       140 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~f~~~~~r~~~~~~~~~~---~--~~p~~~~a~~~~~~---~~-  210 (487)
T COG1233         140 LLAPPRSELLLVPDTPERLLRLLGFSLTSALDFFRGRFGSELLRALLAYSAVYG---G--APPSTPPALYLLLS---HL-  210 (487)
T ss_pred             cCCCchhhhhhccccHHHHHHHHHHhhhhHHHHHHHHhcCHHHHHHHHHHHHhc---C--CCCCchhHHHHHHH---Hh-
Confidence              000000      0       01123344555544422223333332211100   0  1111 111111111   11 


Q ss_pred             cccCCCeEEeecCCcCcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe-cCceEEcCEEEECCCCC-cchh--
Q 020312          217 RFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYL-PNKV--  292 (328)
Q Consensus       217 ~~~g~~~~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~-~g~~~~ad~vV~~~~~~-~~~~--  292 (328)
                        .......+|+||++.|+++|++.+++.|++|+++++|++|+.+ +|+.+++++ +++.+++|+||++.++. +..+  
T Consensus       211 --~~~~G~~~p~GG~~al~~aL~~~~~~~Gg~I~~~~~V~~I~v~-~g~g~~~~~~~g~~~~ad~vv~~~~~~~~~~l~~  287 (487)
T COG1233         211 --GLSGGVFYPRGGMGALVDALAELAREHGGEIRTGAEVSQILVE-GGKGVGVRTSDGENIEADAVVSNADPALLARLLG  287 (487)
T ss_pred             --cccCCeeeeeCCHHHHHHHHHHHHHHcCCEEECCCceEEEEEe-CCcceEEeccccceeccceeEecCchhhhhhhhh
Confidence              1244578999999999999999999999999999999999999 887777777 55689999999988872 2111  


Q ss_pred             -----hh-----hccceeEEeeeehhhhHHHhhheeeeeccccc
Q 020312          293 -----II-----IMLIGFILIFLVRRILRFFLKHLSIQASHWWC  326 (328)
Q Consensus       293 -----~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (328)
                           +.     ++.+++..+++++.......+|..+....|+.
T Consensus       288 ~~~~~~~~~~~~~~~~al~~~~g~~~~~~~~~~~~~~~~~~~~~  331 (487)
T COG1233         288 EARRPRYRGSYLKSLSALSLYLGLKGDLLPLAHHTTILLGDTRE  331 (487)
T ss_pred             hhhhhccccchhhhhHHHHhccCCCCCCcchhhcceEecCCcHH
Confidence                 11     78889999999988522234566666666654

>TIGR02733 desat_CrtD C-3',4' desaturase CrtD

Probab=99.94  E-value=8.7e-26  Score=208.51  Aligned_cols=274  Identities=16%  Similarity=0.189  Sum_probs=163.2

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCcccccchHHHHhhhcCCCCCCCccCCCCCeEEecCcceEecC
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIAN   83 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~   83 (328)
                      +.||||||||++||+||..|+++|++|+|||+++++||++.++..                    .+|.+|.|++++...
T Consensus         1 ~~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~~GG~~~t~~~--------------------~G~~fD~G~~~~~~~   60 (492)
T TIGR02733         1 ETSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQPGGCAGTFRR--------------------RGFTFDVGATQVAGL   60 (492)
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCccceecc--------------------CCEEEeecceEEEec
Confidence            358999999999999999999999999999999999999999965                    579999999998752


Q ss_pred             --ch-HHHHHHhcCCCCeeEEEeeCcee--EeeCC-eEEEcCCCchhhhcCCCCChhhHHHHHHHHHHHhh-------cc
Q 020312           84 --GA-LVRVLIHTDVTKYLYFKAVDGSF--VYNKG-KVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQD-------YD  150 (328)
Q Consensus        84 --~~-~~~~~~~~~~~~~l~~~~~~~~~--~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~  150 (328)
                        .. ....+.+.++... .+...++.+  .+.+| ..+.++ .+.+.+.+.+...+.. + .+++..+.+       ..
T Consensus        61 ~~~~~~~~~~~~lg~~~~-~~~~~d~~~~~~~~dg~~~~~~~-~d~~~~~~~l~~~~p~-~-~~~~~~~~~~~~~~~~~~  136 (492)
T TIGR02733        61 EPGGIHARIFRELGIPLP-EAKILDPACAVDLPDGSEPIPLW-HDPDRWQKERERQFPG-S-ERFWQLCSQLHQSNWRFA  136 (492)
T ss_pred             CcCCHHHHHHHHcCCCCc-ccccCCCCcEEEECCCceEeeee-cCHHHHHHHHHHHCCC-h-HHHHHHHHHHHHHHHHHh
Confidence              22 2233334444311 122223322  22344 345555 3344443222221110 1 011111110       00


Q ss_pred             cCCC----c-c--------------cccccCCCCCHHHHHHhcC--CChhHHHHHhhhhhcccCCCCCCCchHHHHHHHH
Q 020312          151 ENDP----K-T--------------HEGMDLTRVTTRELIAKYG--LDDNTIDFIGHALALHRDDRYLNEPALDTVKRMK  209 (328)
Q Consensus       151 ~~~~----~-~--------------~~~~~~~~~s~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~  209 (328)
                      ...+    . .              .........|+.+++++.+  -++.++.++.....++.....   .....+....
T Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~lr~~l~~~~~~~~~~~~---~~~~~~~~~~  213 (492)
T TIGR02733       137 GRDPVLPPRNYWDLLQLVSALRPDTLLTGPLSLLTVADLLRLCGLGDDRRLRRFLDLQLKLYSQEDA---DETAALYGAT  213 (492)
T ss_pred             hcCCCCCCCCHHHHHHHHHhcChhhhhhhhhhhhhHHHHHHHhCCCccHHHHHHHHHHHhhhccCCh---hhhhHHHHHH
Confidence            0000    0 0              0000123578888888764  344456555432211111100   0111111100


Q ss_pred             HHHHhhhcccCCCeEEeecCCcCcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe-cC-----ceEEcCEEEE
Q 020312          210 LYAESIARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EG-----ETAKCKKVVC  283 (328)
Q Consensus       210 ~~~~~~~~~~g~~~~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~-~g-----~~~~ad~vV~  283 (328)
                       ... +..  .....++++||++.|+++|++.++++|++|+++++|++|..+ ++++.+|.+ ++     +++.||+||+
T Consensus       214 -~~~-~~~--~~~G~~~~~GG~~~l~~aL~~~~~~~G~~i~~~~~V~~I~~~-~~~~~gv~~~~~~~~~~~~~~ad~VI~  288 (492)
T TIGR02733       214 -VLQ-MAQ--APHGLWHLHGSMQTLSDRLVEALKRDGGNLLTGQRVTAIHTK-GGRAGWVVVVDSRKQEDLNVKADDVVA  288 (492)
T ss_pred             -Hhh-ccc--cCCCceeecCcHHHHHHHHHHHHHhcCCEEeCCceEEEEEEe-CCeEEEEEEecCCCCceEEEECCEEEE
Confidence             001 111  123357799999999999999999999999999999999998 777666665 44     5799999999


Q ss_pred             CCCC------Cc-----chh----hh--hccceeEEeeeehhh
Q 020312          284 DPSY------LP-----NKV----II--IMLIGFILIFLVRRI  309 (328)
Q Consensus       284 ~~~~------~~-----~~~----~~--~~~~~~~~~~~~~~~  309 (328)
                      ++++      ++     +..    .+  .+.++++++++++..
T Consensus       289 ~~~~~~~~~ll~~~~~~~~~~~~~~~~~~s~~~~~v~l~~~~~  331 (492)
T TIGR02733       289 NLPPQSLLELLGPLGLPPGYRKRLKKLPEPSGAFVFYLGVKRA  331 (492)
T ss_pred             CCCHHHHHHhcCcccCCHHHHHHHhcCCCCCceEEEEEeeccc
Confidence            9875      12     111    12  577889999999874

Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.

>TIGR02730 carot_isom carotene isomerase

Probab=99.94  E-value=1.6e-25  Score=206.46  Aligned_cols=274  Identities=21%  Similarity=0.259  Sum_probs=171.5

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCcccccchHHHHhhhcCCCCCCCccCCCCCeEEecCcceEecC-
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIAN-   83 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-   83 (328)
                      +||||||||++||+||.+|+++|++|+||||++.+||++++++.                    .+|.+|.|++++... 
T Consensus         1 ~dvvViGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~~~~~--------------------~G~~fd~g~~~~~~~~   60 (493)
T TIGR02730         1 YDAIVIGSGIGGLVTATQLAVKGAKVLVLERYLIPGGSAGYFER--------------------EGYRFDVGASMIFGFG   60 (493)
T ss_pred             CcEEEECCcHHHHHHHHHHHHCCCcEEEEECCCCCCCceeEecc--------------------CCEEEEecchhheecC
Confidence            69999999999999999999999999999999999999999864                    579999999987532 


Q ss_pred             -----chHHHHHHhcCCCCeeEEEeeCceeEe--eCCeEEEcCCCchhhhcCCCCChh--hHHHHHHHHHHHhhccc---
Q 020312           84 -----GALVRVLIHTDVTKYLYFKAVDGSFVY--NKGKVHKVPATDMEALKSPLMGIF--EKRRARKFFIYVQDYDE---  151 (328)
Q Consensus        84 -----~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~---  151 (328)
                           +.+.+.+...+  ..+++......+.+  .+|..+.++ .+.+.+.+.+...+  +...+.+|+..++....   
T Consensus        61 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~~~-~d~~~~~~~l~~~~P~~~~~~~~~~~~~~~~~~~~~  137 (493)
T TIGR02730        61 DKGTTNLLTRALAAVG--RKLETIPDPVQIHYHLPNGLNVKVH-REYDDFIQELVAKFPHEKEGIRRFYDECWQVFNCLN  137 (493)
T ss_pred             CcccccHHHHHHHHcC--CcccccCCCccEEEECCCCeeEeee-cCHHHHHHHHHHHCchhHHHHHHHHHHHHHHHHHHH
Confidence                 22222332222  22333322222222  345556666 34555544333322  12233444433222100   


Q ss_pred             -------CCCcc-c-----------ccccCCCCCHHHHHHhcCCChhHHHHHhhhhhcccCCCCCCCchHHHHHHHHHHH
Q 020312          152 -------NDPKT-H-----------EGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYA  212 (328)
Q Consensus       152 -------~~~~~-~-----------~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~  212 (328)
                             ..+.. .           ........++.++++++.-++.++.++...............+....   ...  
T Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~l~~~~~~~~~~p~~~~p~~~~---~~~--  212 (493)
T TIGR02730       138 SMELLSLEEPRYLFRVFFKHPLACLGLAKYLPQNAGDIARRYIRDPGLLKFIDIECFCWSVVPADQTPMINA---GMV--  212 (493)
T ss_pred             hhhhccccChHHHHHHHhhchhhhhHHHHHhhccHHHHHHHhcCCHHHHHHHHHHHHhccCCCcccchhhhH---HHh--
Confidence                   00000 0           00011236778888888777777766542211111100011111111   111  


Q ss_pred             HhhhcccCCCeEEeecCCcCcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe-cCceEEcCEEEECCCCC---
Q 020312          213 ESIARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYL---  288 (328)
Q Consensus       213 ~~~~~~~g~~~~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~-~g~~~~ad~vV~~~~~~---  288 (328)
                        +... .....++|.||++.++++|.+.++++|++|+++++|++|..+ ++++.+|++ ++++++||+||++++++   
T Consensus       213 --~~~~-~~~g~~~~~gG~~~l~~~L~~~~~~~G~~i~~~~~V~~I~~~-~~~~~gv~~~~g~~~~ad~vV~a~~~~~~~  288 (493)
T TIGR02730       213 --FSDR-HYGGINYPKGGVGQIAESLVKGLEKHGGQIRYRARVTKIILE-NGKAVGVKLADGEKIYAKRIVSNATRWDTF  288 (493)
T ss_pred             --hccc-ccceEecCCChHHHHHHHHHHHHHHCCCEEEeCCeeeEEEec-CCcEEEEEeCCCCEEEcCEEEECCChHHHH
Confidence              1111 123467899999999999999999999999999999999988 788899988 77789999999988752   


Q ss_pred             ----c-----chh----hh--hccceeEEeeeehhhh
Q 020312          289 ----P-----NKV----II--IMLIGFILIFLVRRIL  310 (328)
Q Consensus       289 ----~-----~~~----~~--~~~~~~~~~~~~~~~~  310 (328)
                          +     +..    ++  .+.+.+++|++++...
T Consensus       289 ~~Ll~~~~~~~~~~~~~~~~~~s~s~~~~~l~l~~~~  325 (493)
T TIGR02730       289 GKLLKAENLPKKEKNWQRNYVKSPSFLSLHLGVKADV  325 (493)
T ss_pred             HHhCCccccchhhHHHHhhccCCCceEEEEEEecCcc
Confidence                2     111    12  5788999999998853

Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.

>PRK12416 protoporphyrinogen oxidase; Provisional

Probab=99.94  E-value=6.1e-25  Score=201.56  Aligned_cols=268  Identities=13%  Similarity=0.188  Sum_probs=165.6

Q ss_pred             cEEEECCChhHHHHHHhhhhC------CCeEEEeccCCCCCCcccccchHHHHhhhcCCCCCCCccCCCCCeEEecCcce
Q 020312            6 DVIVLGTGLKECILSGLLSVD------GLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKF   79 (328)
Q Consensus         6 dvvIvG~G~aGl~aA~~L~~~------G~~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~   79 (328)
                      +|+|||||+|||+||++|+++      |.+|+|||+++++||++.|.+.                    .++.+|+|+++
T Consensus         3 ~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr~~T~~~--------------------~g~~~e~G~~~   62 (463)
T PRK12416          3 TVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKIHSVEE--------------------KDFIMESGADS   62 (463)
T ss_pred             eEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccceEEEEee--------------------CCEEEecCcHH
Confidence            699999999999999999986      3799999999999999999864                    46889999999


Q ss_pred             EecCch-HHHHHHhcCCCCeeEEEeeCceeEeeCCeEEEcCCCchhh--------hcCCCCChhhHHHHHHHHHHHhhcc
Q 020312           80 IIANGA-LVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEA--------LKSPLMGIFEKRRARKFFIYVQDYD  150 (328)
Q Consensus        80 ~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~  150 (328)
                      +...++ +.+++.+.++...+........+.+.++...++|......        +...+.+...  .+    +.+.+..
T Consensus        63 i~~~~~~~~~l~~~lgl~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~~~~--~~----~~~~~~~  136 (463)
T PRK12416         63 IVARNEHVMPLVKDLNLEEEMVYNETGISYIYSDNTLHPIPSDTIFGIPMSVESLFSSTLVSTKG--KI----VALKDFI  136 (463)
T ss_pred             HhcCCHHHHHHHHHcCCccceecCCCCceEEEECCeEEECCCCCeecCCCChHHhhcCCcCCHHH--HH----Hhhhhhc
Confidence            976654 4455556676655443333455666667776665432111        1111111111  11    1111111


Q ss_pred             cCCCcccccccCCCCCHHHHHHhcCCChhH-HHHHhhhhhcccCCCCCCCchHHHHHHHHHHHHh-------hh----c-
Q 020312          151 ENDPKTHEGMDLTRVTTRELIAKYGLDDNT-IDFIGHALALHRDDRYLNEPALDTVKRMKLYAES-------IA----R-  217 (328)
Q Consensus       151 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~-------~~----~-  217 (328)
                      ...     ....+..|+.+|+++. +.+.. ..++.+.+......+....+....+..+..+...       +.    . 
T Consensus       137 ~~~-----~~~~~~~sv~~~l~~~-~~~~~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~~~~~~~s~~~~~~~~~~~~  210 (463)
T PRK12416        137 TKN-----KEFTKDTSLALFLESF-LGKELVERQIAPVLSGVYSGKLNELTMASTLPYLLDYKNKYGSIIKGFEENKKQF  210 (463)
T ss_pred             cCC-----CCCCCCCCHHHHHHHh-cCHHHHHHHHHHHhcccccCCcccccHHHhhHHHHHHHHhcCcHHHHHHHhhhcc
Confidence            100     0012578999999876 44444 5566665432112222222221112221111110       00    0 


Q ss_pred             -ccCCCeEEeecCCcCcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe-cCceEEcCEEEECCCC------C-
Q 020312          218 -FQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSY------L-  288 (328)
Q Consensus       218 -~~g~~~~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~-~g~~~~ad~vV~~~~~------~-  288 (328)
                       ..+...+++++||++.|+++|++.+++  ++|+++++|++|+.+ ++++ .|++ +++.+.||+||++++.      . 
T Consensus       211 ~~~~~~~~~~~~gG~~~l~~~l~~~l~~--~~i~~~~~V~~I~~~-~~~~-~v~~~~g~~~~ad~VI~a~p~~~~~~ll~  286 (463)
T PRK12416        211 QSAGNKKFVSFKGGLSTIIDRLEEVLTE--TVVKKGAVTTAVSKQ-GDRY-EISFANHESIQADYVVLAAPHDIAETLLQ  286 (463)
T ss_pred             CCCCCCceEeeCCCHHHHHHHHHHhccc--ccEEcCCEEEEEEEc-CCEE-EEEECCCCEEEeCEEEECCCHHHHHhhcC
Confidence             012345778899999999999887654  689999999999988 6664 4555 7778999999988764      1 


Q ss_pred             cch----hhh-hccceeEEeeeehhh
Q 020312          289 PNK----VII-IMLIGFILIFLVRRI  309 (328)
Q Consensus       289 ~~~----~~~-~~~~~~~~~~~~~~~  309 (328)
                      ++.    +.+ ...+..+++++++..
T Consensus       287 ~~~l~~~~~~~~~~~~~~v~l~~~~~  312 (463)
T PRK12416        287 SNELNEQFHTFKNSSLISIYLGFDIL  312 (463)
T ss_pred             CcchhHHHhcCCCCceEEEEEEechh
Confidence            111    222 456788899999854

>PRK07233 hypothetical protein; Provisional

Probab=99.94  E-value=1.9e-24  Score=197.16  Aligned_cols=273  Identities=21%  Similarity=0.251  Sum_probs=168.3

Q ss_pred             cEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCcccccchHHHHhhhcCCCCCCCccCCCCCeEEecCcceEecCc-
Q 020312            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIANG-   84 (328)
Q Consensus         6 dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-   84 (328)
                      +|+|||||++||+||++|+++|++|+|||+++++||++.+...                    .++.+|.|.|++.... 
T Consensus         1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~~~GG~~~s~~~--------------------~g~~~d~g~~~~~~~~~   60 (434)
T PRK07233          1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLGGLAASFEF--------------------GGLPIERFYHHIFKSDE   60 (434)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCceeeecc--------------------CCcchhhhhhhhccccH
Confidence            6899999999999999999999999999999999999998864                    3578888888876554 


Q ss_pred             hHHHHHHhcCCCCeeEEEeeCceeEeeCCeEEEcCCCchhhhcCCCCChhhHHHHHHHHHHHhhcccCCCcccccccCCC
Q 020312           85 ALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTR  164 (328)
Q Consensus        85 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (328)
                      .+.+.+.+.++...+.+..... ..+.++..++++ .....+........++....  . ....... ..   .....+.
T Consensus        61 ~~~~l~~~lg~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~-~~---~~~~~~~  131 (434)
T PRK07233         61 ALLELLDELGLEDKLRWRETKT-GYYVDGKLYPLG-TPLELLRFPHLSLIDKFRLG--L-LTLLARR-IK---DWRALDK  131 (434)
T ss_pred             HHHHHHHHcCCCCceeeccCce-EEEECCeEecCC-CHHHHHcCCCCCHHHHHHhH--H-HHHhhhh-cc---ccccccc
Confidence            4455555566655444433222 233455555443 11222221222222211111  1 1111100 00   0112356


Q ss_pred             CCHHHHHHhcCCChhHHHHHhhhhhcccCCCCCCCchHHHHHHHHHHHHhhhcccC-CCeEEeecCCcCcHHHHHHHHHH
Q 020312          165 VTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQG-GSPYIYPLYGLGELPQAFARLSA  243 (328)
Q Consensus       165 ~s~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g-~~~~~~~~gG~~~l~~~l~~~~~  243 (328)
                      .++.+|+++...++..+.++.+.+...........+....+.++....  ...... ...+.+++||++.++++|++.++
T Consensus       132 ~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~--~~~~~~~~~~~~~~~gG~~~l~~~l~~~l~  209 (434)
T PRK07233        132 VPAEEWLRRWSGEGVYEVFWEPLLESKFGDYADDVSAAWLWSRIKRRG--NRRYSLFGEKLGYLEGGFATLIDALAEAIE  209 (434)
T ss_pred             ccHHHHHHHhcCHHHHHHHHHHHHhcccCCCccccCHHHHHHHHhhhh--ccccccCCceEeccCCCHHHHHHHHHHHHH
Confidence            899999988754443455665544322222222223222222222111  000000 23477899999999999999999


Q ss_pred             HcCcEEEcCcceeEEEecCCCcEEEEEecCceEEcCEEEECCCC------Cc---chhh----h-hccceeEEeeeehhh
Q 020312          244 VYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSY------LP---NKVI----I-IMLIGFILIFLVRRI  309 (328)
Q Consensus       244 ~~G~~i~~~~~V~~I~~~~~~~v~~v~~~g~~~~ad~vV~~~~~------~~---~~~~----~-~~~~~~~~~~~~~~~  309 (328)
                      +.|++|++|++|++|+.+ +++++++..++++++||+||++++.      .|   +...    . ...+..+++++++..
T Consensus       210 ~~g~~v~~~~~V~~i~~~-~~~~~~~~~~~~~~~ad~vI~a~p~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  288 (434)
T PRK07233        210 ARGGEIRLGTPVTSVVID-GGGVTGVEVDGEEEDFDAVISTAPPPILARLVPDLPADVLARLRRIDYQGVVCMVLKLRRP  288 (434)
T ss_pred             hcCceEEeCCCeeEEEEc-CCceEEEEeCCceEECCEEEECCCHHHHHhhcCCCcHHHHhhhcccCccceEEEEEEecCC
Confidence            999999999999999987 6777666677889999999988764      11   1111    1 456777888888775


Q ss_pred             h
Q 020312          310 L  310 (328)
Q Consensus       310 ~  310 (328)
                      +
T Consensus       289 ~  289 (434)
T PRK07233        289 L  289 (434)
T ss_pred             C
Confidence            3

>PRK07208 hypothetical protein; Provisional

Probab=99.93  E-value=1.6e-24  Score=199.79  Aligned_cols=274  Identities=17%  Similarity=0.157  Sum_probs=167.5

Q ss_pred             CCCcccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCcccccchHHHHhhhcCCCCCCCccCCCCCeEEecCcceE
Q 020312            1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFI   80 (328)
Q Consensus         1 ~~~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~   80 (328)
                      |++..||+|||||++||+||++|+++|++|+|+|+++++||++.|...                    .++.+|.|+|++
T Consensus         1 ~~~~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~~GG~~~s~~~--------------------~g~~~d~G~h~~   60 (479)
T PRK07208          1 MTNKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVGGISRTVTY--------------------KGNRFDIGGHRF   60 (479)
T ss_pred             CCCCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeeecc--------------------CCceEccCCcee
Confidence            788899999999999999999999999999999999999999988754                    458899999998


Q ss_pred             ecCchHHHHH-HhcCCCCeeEEEeeCceeEeeCCeEEEcCCCchhhhcCCCCChhhHHHHHHHHHHHhhcccCCCccccc
Q 020312           81 IANGALVRVL-IHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEG  159 (328)
Q Consensus        81 ~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (328)
                      ...++.+..+ .+......+... ......+.+|..+.+|....+.+.  ..++..  ......++......  +     
T Consensus        61 ~~~~~~~~~l~~~l~~~~~~~~~-~~~~~~~~~g~~~~~p~~~~~~l~--~~~~~~--~~~~~~~~~~~~~~--~-----  128 (479)
T PRK07208         61 FSKSPEVMDLWNEILPDDDFLLR-PRLSRIYYRGKFFDYPLKAFDALK--NLGLWR--TAKCGASYLKARLR--P-----  128 (479)
T ss_pred             ccCCHHHHHHHHHhcCCCccccc-cccceEEECCEEecCCcchhHHHH--hCCHhH--HHHHHHHHHHHhcC--C-----
Confidence            8765544433 344432222222 223345567777777744222221  111111  11111122222110  0     


Q ss_pred             ccCCCCCHHHHHHhcCCChhHHHHHhhhhh-cccCCCCCCCchHHHHH---------HHHHHHHhh-h-------ccc-C
Q 020312          160 MDLTRVTTRELIAKYGLDDNTIDFIGHALA-LHRDDRYLNEPALDTVK---------RMKLYAESI-A-------RFQ-G  220 (328)
Q Consensus       160 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~l~---------~~~~~~~~~-~-------~~~-g  220 (328)
                       ..+..|+.+|+++..-.+....++.+... ++.. +....+....+.         .+....... .       ... .
T Consensus       129 -~~~~~s~~e~l~~~~g~~~~~~~~~p~~~~~~~~-~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (479)
T PRK07208        129 -RKEEDSFEDWVINRFGRRLYSTFFKGYTEKVWGV-PCDEISADWAAQRIKGLSLGKAIRNALRRSLGLKRRNKEVETSL  206 (479)
T ss_pred             -CCCCCCHHHHHHHhhCHHHHHHHHHHhhhhhhCC-ChHHCCChHHhCcccCCCHHHHHHHHhhhcccccccCCCccccc
Confidence             01568999999876333333556665442 3321 111111111110         111111110 0       000 0


Q ss_pred             CCeEEeecCCcCcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCc-EEEEEe---cCc--eEEcCEEEECCCC------C
Q 020312          221 GSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGK-VVGVTS---EGE--TAKCKKVVCDPSY------L  288 (328)
Q Consensus       221 ~~~~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~-v~~v~~---~g~--~~~ad~vV~~~~~------~  288 (328)
                      ...+.+|+||++.++++|++.+++.|++|++|++|++|..+ +++ ++.+..   +|+  .+.||+||+++++      +
T Consensus       207 ~~~~~~p~gG~~~l~~~L~~~l~~~g~~i~~~~~V~~I~~~-~~~~v~~~~~~~~~g~~~~~~ad~VI~a~p~~~l~~~l  285 (479)
T PRK07208        207 IEEFRYPKLGPGQLWETAAEKLEALGGKVVLNAKVVGLHHD-GDGRIAVVVVNDTDGTEETVTADQVISSMPLRELVAAL  285 (479)
T ss_pred             eeEEeCCCCCcchHHHHHHHHHHHcCCEEEeCCEEEEEEEc-CCcEEEEEEEEcCCCCEEEEEcCEEEECCCHHHHHHhc
Confidence            23578899999999999999999999999999999999998 554 444443   243  5899999998764      1


Q ss_pred             ----cchhh----h-hccceeEEeeeehhh
Q 020312          289 ----PNKVI----I-IMLIGFILIFLVRRI  309 (328)
Q Consensus       289 ----~~~~~----~-~~~~~~~~~~~~~~~  309 (328)
                          |+...    . ...+..++++++++.
T Consensus       286 ~~~~~~~~~~~~~~l~~~~~~~v~l~~~~~  315 (479)
T PRK07208        286 DPPPPPEVRAAAAGLRYRDFITVGLLVKEL  315 (479)
T ss_pred             CCCCCHHHHHHHhCCCcceeEEEEEEecCC
Confidence                12221    1 345667888888765

>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]

Probab=99.93  E-value=7.8e-25  Score=193.50  Aligned_cols=269  Identities=14%  Similarity=0.200  Sum_probs=179.1

Q ss_pred             cEEEECCChhHHHHHHhhhhCC--CeEEEeccCCCCCCcccccchHHHHhhhcCCCCCCCccCCCCCeEEecCcceEecC
Q 020312            6 DVIVLGTGLKECILSGLLSVDG--LKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIAN   83 (328)
Q Consensus         6 dvvIvG~G~aGl~aA~~L~~~G--~~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~   83 (328)
                      .|+|||||++||+|||+|.|++  .+|+|+|+++++||...|...                    .+|.+|.|++.+...
T Consensus         2 ~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG~l~T~~~--------------------~G~~~e~G~~~f~~~   61 (444)
T COG1232           2 KIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGGLLRTVKI--------------------DGFLFERGPHHFLAR   61 (444)
T ss_pred             eEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCCceEEEEee--------------------CCEEEeechhheecc
Confidence            6999999999999999999999  999999999999999999965                    579999999998776


Q ss_pred             -chHHHHHHhcCCCCeeEEEeeCceeEeeCCeEEEcCCCchhhhcCCCCChhhHHHHHHHHHHHhhcccCCCcccccccC
Q 020312           84 -GALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDL  162 (328)
Q Consensus        84 -~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (328)
                       ..+++.+.++++.+.+..+.....|++.+|+++++|....-.+.....+  +   .......+.++... +.   ....
T Consensus        62 ~~~~l~li~eLGled~l~~~~~~~~~i~~~gkl~p~P~~~i~~ip~~~~~--~---~~~~~~~~~~~~~~-~~---~~~~  132 (444)
T COG1232          62 KEEILDLIKELGLEDKLLWNSTARKYIYYDGKLHPIPTPTILGIPLLLLS--S---EAGLARALQEFIRP-KS---WEPK  132 (444)
T ss_pred             hHHHHHHHHHhCcHHhhccCCcccceEeeCCcEEECCccceeecCCcccc--c---hhHHHHHHHhhhcc-cC---CCCC
Confidence             5666677778888887767666668889999999996532222221111  1   11112222222110 00   0122


Q ss_pred             CCCCHHHHHHhcCCChhH-HHHHhhhhh-cccCCCCCCCchHHH----HHHHHHHHHh---hhc--cc----CCCeEEee
Q 020312          163 TRVTTRELIAKYGLDDNT-IDFIGHALA-LHRDDRYLNEPALDT----VKRMKLYAES---IAR--FQ----GGSPYIYP  227 (328)
Q Consensus       163 ~~~s~~~~~~~~~~~~~~-~~~~~~~~~-l~~~~~~~~~~~~~~----l~~~~~~~~~---~~~--~~----g~~~~~~~  227 (328)
                      +..++++|++++ +.+++ ..++.+.+. ++. ++....++...    ......+...   ..+  ..    ....+.+.
T Consensus       133 ~d~sv~~f~r~~-fG~ev~~~~~~pll~giy~-~~~~~LS~~~~~p~~~~~e~~~~s~~~g~~~~~~~~~~~~~~~~~~~  210 (444)
T COG1232         133 QDISVGEFIRRR-FGEEVVERFIEPLLEGIYA-GDADKLSAAAAFPILARAERKYGSLLRGAKKEGLPKQSLKKEKFGYL  210 (444)
T ss_pred             CCcCHHHHHHHH-HhHHHHHHHHHHHhhchhc-CCHHHhhHHHhcchhhhhhhhhcchhhhhhhccCccccccccccccc
Confidence            678999999888 44554 557777653 332 11111111100    0001111000   000  00    01357788


Q ss_pred             cCCcCcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEecCceEEcCEEEECCCC------Ccc-----hhhh-h
Q 020312          228 LYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSY------LPN-----KVII-I  295 (328)
Q Consensus       228 ~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~~g~~~~ad~vV~~~~~------~~~-----~~~~-~  295 (328)
                      +||++++++++++.++..   |+++++|++|.++ +...+.+..+++++.||.||+|+++      +++     .+.+ .
T Consensus       211 ~gG~~~l~~al~~~l~~~---i~~~~~V~~i~~~-~~~~~~~~~~g~~~~~D~VI~t~p~~~l~~ll~~~~~~~~~~~~~  286 (444)
T COG1232         211 RGGLQSLIEALAEKLEAK---IRTGTEVTKIDKK-GAGKTIVDVGGEKITADGVISTAPLPELARLLGDEAVSKAAKELQ  286 (444)
T ss_pred             CccHHHHHHHHHHHhhhc---eeecceeeEEEEc-CCccEEEEcCCceEEcceEEEcCCHHHHHHHcCCcchhhhhhhcc
Confidence            999999999999887654   9999999999998 6666666778899999999998765      122     1122 6


Q ss_pred             ccceeEEeeeehhh
Q 020312          296 MLIGFILIFLVRRI  309 (328)
Q Consensus       296 ~~~~~~~~~~~~~~  309 (328)
                      ..+..++.++++.+
T Consensus       287 ~~s~~~vv~~~~~~  300 (444)
T COG1232         287 YTSVVTVVVGLDEK  300 (444)
T ss_pred             ccceEEEEEEeccc
Confidence            77888888888775

>PLN02576 protoporphyrinogen oxidase

Probab=99.93  E-value=7.1e-24  Score=196.25  Aligned_cols=251  Identities=18%  Similarity=0.185  Sum_probs=159.9

Q ss_pred             CcccEEEECCChhHHHHHHhhhhC-CCeEEEeccCCCCCCcccccchHHHHhhhcCCCCCCCccCCCCCeEEecCcceEe
Q 020312            3 EEYDVIVLGTGLKECILSGLLSVD-GLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFII   81 (328)
Q Consensus         3 ~~~dvvIvG~G~aGl~aA~~L~~~-G~~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~   81 (328)
                      +.+||+|||||++||+||++|+++ |++|+|||+++++||++.|.+.                    .++.+|.|++++.
T Consensus        11 ~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvGGr~~t~~~--------------------~g~~~d~G~~~~~   70 (496)
T PLN02576         11 SSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGGNITSVSE--------------------DGFIWEEGPNSFQ   70 (496)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCCCceeEecc--------------------CCeEEecCCchhc
Confidence            467999999999999999999999 9999999999999999999864                    4689999999999


Q ss_pred             cCchHHHHHHhcCCCCeeEEEee-CceeEeeCCeEEEcCCCchhhhcCCCCChhhHHHHHHHHHHHhhcccCCCcccccc
Q 020312           82 ANGALVRVLIHTDVTKYLYFKAV-DGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGM  160 (328)
Q Consensus        82 ~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (328)
                      ..++.+..+.+.++...+.+... ...+.+.+|+.+++|.+..+.+...+.++.++-  ........ .....+      
T Consensus        71 ~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~------  141 (496)
T PLN02576         71 PSDPELTSAVDSGLRDDLVFPDPQAPRYVVWNGKLRPLPSNPIDLPTFDLLSAPGKI--RAGLGAFG-WKRPPP------  141 (496)
T ss_pred             cCcHHHHHHHHcCChhheecCCCCceEEEEECCEEEEcCCChHHhcCcCcCChhHHH--HHhHHHhh-ccCCCC------
Confidence            88777777777777666544332 334666788888888654444444444443321  11111111 100000      


Q ss_pred             cCCCCCHHHHHHhcCCChhH-HHHHhhhhhcccCCCCCCCchHHHHHHHHHHH--------Hhhhcc-------------
Q 020312          161 DLTRVTTRELIAKYGLDDNT-IDFIGHALALHRDDRYLNEPALDTVKRMKLYA--------ESIARF-------------  218 (328)
Q Consensus       161 ~~~~~s~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~--------~~~~~~-------------  218 (328)
                      .....|+.+|+++. +.+.. ..++.+.+.-....+....+....+..+..+.        ..+...             
T Consensus       142 ~~~~~sv~~~l~~~-~g~~~~~~~~~p~~~~~~~~~~~~lS~~~~~~~~~~~e~~~gs~~~~~l~~~~~~~~~~~~~~~~  220 (496)
T PLN02576        142 PGREESVGEFVRRH-LGDEVFERLIDPFVSGVYAGDPSSLSMKAAFPKLWNLEKRGGSIIGGAIKAIQEAKKNPKPEPRD  220 (496)
T ss_pred             CCCCCcHHHHHHHh-cCHHHHHHHHHHHhCceecCCHHHHhHHHHhHHHHHHHHhcCcHHHHHHHhhhhhcccccccccc
Confidence            12568999999886 56655 56666655321112111111222222211110        000000             


Q ss_pred             -----cCCCeEEeecCCcCcHHHHHHHHHHHcC-cEEEcCcceeEEEecCCCc-E-EEEEe-cC-ceEEcCEEEECCCC
Q 020312          219 -----QGGSPYIYPLYGLGELPQAFARLSAVYG-GTYMLNKPECKVEFDEEGK-V-VGVTS-EG-ETAKCKKVVCDPSY  287 (328)
Q Consensus       219 -----~g~~~~~~~~gG~~~l~~~l~~~~~~~G-~~i~~~~~V~~I~~~~~~~-v-~~v~~-~g-~~~~ad~vV~~~~~  287 (328)
                           ......+..+||++.|+++|++.+   + .+|++|++|++|+.+ ++. + +.+.+ ++ +++.||+||++++.
T Consensus       221 ~~~~~~~~~~~~~~~gG~~~L~~~la~~l---~~~~i~l~~~V~~I~~~-~~~~~~v~~~~~~g~~~~~ad~VI~a~P~  295 (496)
T PLN02576        221 PRLPKPKGQTVGSFRGGLQTLPDALAKRL---GKDKVKLNWKVLSLSKN-DDGGYSLTYDTPEGKVNVTAKAVVMTAPL  295 (496)
T ss_pred             cccccccCCeeEeccchHHHHHHHHHHhh---CcCcEEcCCEEEEEEEC-CCCcEEEEEecCCCceeEEeCEEEECCCH
Confidence                 011234667899999999997654   5 689999999999987 544 3 22333 34 36999999988764

>TIGR00562 proto_IX_ox protoporphyrinogen oxidase

Probab=99.93  E-value=7.5e-24  Score=194.56  Aligned_cols=266  Identities=14%  Similarity=0.123  Sum_probs=164.3

Q ss_pred             ccEEEECCChhHHHHHHhhhhC----CCeEEEeccCCCCCCcccccchHHHHhhhcCCCCCCCccCCCCCeEEecCcceE
Q 020312            5 YDVIVLGTGLKECILSGLLSVD----GLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFI   80 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~----G~~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~   80 (328)
                      .||+|||||++||+||++|+++    |++|+|+|+++++||++.|.+.                    .++.+|.|++++
T Consensus         3 ~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG~~~t~~~--------------------~g~~~e~G~~~~   62 (462)
T TIGR00562         3 KHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGKIQTVKE--------------------DGYLIERGPDSF   62 (462)
T ss_pred             ceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcceEEEEee--------------------CCEEEecCcccc
Confidence            5999999999999999999999    9999999999999999999864                    458899999999


Q ss_pred             ecCch-HHHHHHhcCCCCeeEEEeeCceeEeeC-CeEEEcCCCchhhhcCCCCChhhHHHHHHHHHHHhhcccCCCcccc
Q 020312           81 IANGA-LVRVLIHTDVTKYLYFKAVDGSFVYNK-GKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHE  158 (328)
Q Consensus        81 ~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (328)
                      ....+ +.+++.+.++...+........+.+.+ |+.+++|.+..+.+...+.++..+  +...+.   .+....     
T Consensus        63 ~~~~~~~~~l~~~lgl~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~--~~~~~~---~~~~~~-----  132 (462)
T TIGR00562        63 LERKKSAPDLVKDLGLEHVLVSDATGQRYVLVNRGKLMPVPTKIAPFVKTGLFSLGGK--LRAGMD---FIRPAS-----  132 (462)
T ss_pred             ccCChHHHHHHHHcCCCcccccCCCCceEEEECCCceecCCCChHHHhcCCCCCchhh--HHhhhh---hccCCC-----
Confidence            87765 555555566655433222334455555 788888755334444444443221  111111   111100     


Q ss_pred             cccCCCCCHHHHHHhcCCChhH-HHHHhhhhh-cccCCCCCCCchHHHHHHHHHHH-------Hhhh------------c
Q 020312          159 GMDLTRVTTRELIAKYGLDDNT-IDFIGHALA-LHRDDRYLNEPALDTVKRMKLYA-------ESIA------------R  217 (328)
Q Consensus       159 ~~~~~~~s~~~~~~~~~~~~~~-~~~~~~~~~-l~~~~~~~~~~~~~~l~~~~~~~-------~~~~------------~  217 (328)
                        .....|+.+|+++. +.+.+ ..++.+.+. ++. .+....++...+.++....       ..+.            .
T Consensus       133 --~~~d~s~~e~l~~~-~g~~~~~~~~~p~~~~~~~-~~~~~ls~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~  208 (462)
T TIGR00562       133 --PGKDESVEEFVRRR-FGDEVVENLIEPLLSGIYA-GDPSKLSLKSTFPKFYQTEQKHGSLILGMKKTRNLPQGSGLQL  208 (462)
T ss_pred             --CCCCcCHHHHHHHh-cCHHHHHHHHHHHhccccc-CCHHHhhHHHHhHHHHHHHHhcCcHHHHHHhhcccCccccccc
Confidence              11348999999877 44444 556666553 222 1111111121111111110       0000            0


Q ss_pred             cc-C-CCeEEeecCCcCcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe-cCceEEcCEEEECCCC------C
Q 020312          218 FQ-G-GSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSY------L  288 (328)
Q Consensus       218 ~~-g-~~~~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~-~g~~~~ad~vV~~~~~------~  288 (328)
                      +. + ...+..++||++++++++++.+.  .++|+++++|++|..+ ++++ .|++ +|+++.||+||++++.      .
T Consensus       209 ~~~~~~~~~~~~~gG~~~l~~~l~~~l~--~~~i~~~~~V~~I~~~-~~~~-~v~~~~g~~~~ad~VI~t~P~~~~~~ll  284 (462)
T TIGR00562       209 TAKKQGQDFQTLATGLETLPEEIEKRLK--LTKVYKGTKVTKLSHR-GSNY-TLELDNGVTVETDSVVVTAPHKAAAGLL  284 (462)
T ss_pred             cccccCCceEecchhHHHHHHHHHHHhc--cCeEEcCCeEEEEEec-CCcE-EEEECCCcEEEcCEEEECCCHHHHHHHh
Confidence            00 0 11256788999999999987664  2789999999999987 5554 3555 6678999999988764      1


Q ss_pred             ---cchhh----h-hccceeEEeeeehh
Q 020312          289 ---PNKVI----I-IMLIGFILIFLVRR  308 (328)
Q Consensus       289 ---~~~~~----~-~~~~~~~~~~~~~~  308 (328)
                         ++...    + ...+..++.++++.
T Consensus       285 ~~~~~~~~~~l~~l~~~~~~~v~l~~~~  312 (462)
T TIGR00562       285 SELSNSASSHLDKIHSPPVANVNLGFPE  312 (462)
T ss_pred             cccCHHHHHHHhcCCCCceEEEEEEEch
Confidence               22221    1 45666777777654

This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.

>PRK11883 protoporphyrinogen oxidase; Reviewed

Probab=99.92  E-value=1.1e-23  Score=193.10  Aligned_cols=271  Identities=12%  Similarity=0.162  Sum_probs=160.7

Q ss_pred             ccEEEECCChhHHHHHHhhhhCC--CeEEEeccCCCCCCcccccchHHHHhhhcCCCCCCCccCCCCCeEEecCcceEec
Q 020312            5 YDVIVLGTGLKECILSGLLSVDG--LKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIA   82 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G--~~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~   82 (328)
                      .+|+|||||+|||+||++|+++|  ++|+|||+++++||++.|.+.                    .++.+|+|++++..
T Consensus         1 ~~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~GGr~~t~~~--------------------~g~~~d~G~~~~~~   60 (451)
T PRK11883          1 KKVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGGKIQTVRK--------------------DGFPIELGPESFLA   60 (451)
T ss_pred             CeEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCcceEEEEee--------------------CCeEEecChHHhcC
Confidence            37999999999999999999988  999999999999999999864                    46889999987765


Q ss_pred             Cc-hHHHHHHhcCCCCeeEEEeeCceeEeeCCeEEEcCCCchhhhcCCC-----CChhhHHHHHHHHHHHhhcccCCCcc
Q 020312           83 NG-ALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPL-----MGIFEKRRARKFFIYVQDYDENDPKT  156 (328)
Q Consensus        83 ~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (328)
                      .+ .+...+.+.++...+........+.+.+|+.+.+|......+...+     ..++......+   ......  .+  
T Consensus        61 ~~~~~~~l~~~lgl~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~--~~--  133 (451)
T PRK11883         61 RKPSAPALVKELGLEDELVANTTGQSYIYVNGKLHPIPPGTVMGIPTSIAPFLFAGLVSPIGKLR---AAADLR--PP--  133 (451)
T ss_pred             CcHHHHHHHHHcCCccceecCCCCcceEEECCeEEECCCCCeeccCCCchhhhcCCCCCHHHHHH---hhCccc--CC--
Confidence            54 4455555666654432222223355567777766632111111000     11111101001   001110  00  


Q ss_pred             cccccCCCCCHHHHHHhcCCChhH-HHHHhhhh-hcccCCCCCCCchHHHHHHHHHHH-------Hhh----hcc--cCC
Q 020312          157 HEGMDLTRVTTRELIAKYGLDDNT-IDFIGHAL-ALHRDDRYLNEPALDTVKRMKLYA-------ESI----ARF--QGG  221 (328)
Q Consensus       157 ~~~~~~~~~s~~~~~~~~~~~~~~-~~~~~~~~-~l~~~~~~~~~~~~~~l~~~~~~~-------~~~----~~~--~g~  221 (328)
                       .....+..|+.+|+++. +++.. +.++.+.+ .++. .+....+....+..+..+.       ..+    ...  ...
T Consensus       134 -~~~~~~~~s~~e~l~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (451)
T PRK11883        134 -RWKPGQDQSVGAFFRRR-FGDEVVENLIEPLLSGIYA-GDIDTLSLRATFPQLAQAEDKYGSLLRGMRKALPKEKKKTK  210 (451)
T ss_pred             -CCCCCCCcCHHHHHHHh-ccHHHHHHHHHHhhceeec-CChHHccHHHhHHHHHHHHHhcCcHHHHHHhhccccCCCCC
Confidence             01123568999999875 55554 45555544 2322 1111112111111111111       000    000  012


Q ss_pred             CeEEeecCCcCcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe-cCceEEcCEEEECCCC-------Ccchhh
Q 020312          222 SPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSY-------LPNKVI  293 (328)
Q Consensus       222 ~~~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~-~g~~~~ad~vV~~~~~-------~~~~~~  293 (328)
                      ..++++++|++.+++++++.+...  +|+++++|++|+.+ ++.+ .|++ +|+++.||+||++++.       .++++.
T Consensus       211 ~~~~~~~~G~~~l~~~l~~~l~~~--~i~~~~~V~~i~~~-~~~~-~v~~~~g~~~~~d~vI~a~p~~~~~~l~~~~~~~  286 (451)
T PRK11883        211 GVFGTLKGGLQSLIEALEEKLPAG--TIHKGTPVTKIDKS-GDGY-EIVLSNGGEIEADAVIVAVPHPVLPSLFVAPPAF  286 (451)
T ss_pred             CceEeeccHHHHHHHHHHHhCcCC--eEEeCCEEEEEEEc-CCeE-EEEECCCCEEEcCEEEECCCHHHHHHhccChhHH
Confidence            346788999999999998765433  89999999999987 5554 4554 7888999999998775       122221


Q ss_pred             ----h-hccceeEEeeeehhh
Q 020312          294 ----I-IMLIGFILIFLVRRI  309 (328)
Q Consensus       294 ----~-~~~~~~~~~~~~~~~  309 (328)
                          + ...+..+++++++..
T Consensus       287 ~~~~~~~~~~~~~v~l~~~~~  307 (451)
T PRK11883        287 ALFKTIPSTSVATVALAFPES  307 (451)
T ss_pred             HHHhCCCCCceEEEEEEeccc
Confidence                2 345666888888765

>KOG4405 consensus GDP dissociation inhibitor [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.92  E-value=1.2e-23  Score=177.31  Aligned_cols=282  Identities=34%  Similarity=0.657  Sum_probs=231.5

Q ss_pred             CCcccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCcccccchH--------HHHhh------------hc-CC--
Q 020312            2 DEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLI--------QLWKR------------FR-GN--   58 (328)
Q Consensus         2 ~~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~--------~~~~~------------~~-~~--   58 (328)
                      |.+|||||||-|+.-...|...++.|.+|+-|+.+.+.||..+|+.+.        .+...            .+ ++  
T Consensus         6 P~~fDvVViGTGlpESilAAAcSrsG~sVLHlDsn~yYGg~waSfSms~ihe~~e~~l~~~d~ls~eVe~~~al~~n~~~   85 (547)
T KOG4405|consen    6 PEEFDVVVIGTGLPESILAAACSRSGSSVLHLDSNEYYGGNWASFSMSMIHEVEEAALTKKDHLSNEVEPPSALQKNNAP   85 (547)
T ss_pred             chhccEEEEcCCCcHHHHHHHhhhcCCceEeccCccccCCcccceeechhhhhhHHHHhhhhccccccCCCccccccCCC
Confidence            567999999999999999999999999999999999999999888765        21111            01 00  


Q ss_pred             ----------------CCCC-C---------------ccCCCCCeEEecCcceEecCchHHHHHHhcCCCCeeEEEeeCc
Q 020312           59 ----------------EQPP-A---------------HLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDG  106 (328)
Q Consensus        59 ----------------~~~~-~---------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  106 (328)
                                      +-+| .               ....++.|++|+-|+.++..+.++..++++++++|.+|+..+.
T Consensus        86 ~t~~sn~e~~~~vEken~~~~s~~d~~E~~p~~nr~~i~~~~RRFniDLvpkilys~g~lI~lLikS~vsrYaEFK~V~r  165 (547)
T KOG4405|consen   86 PTPPSNNEIFLEVEKENCIPSSLKDSVEDSPSKNRSQIEKESRRFNIDLVPKILYSAGELIQLLIKSNVSRYAEFKNVDR  165 (547)
T ss_pred             CCCCCCchhhhheeeeccccccccchhhhcccccHHHHHHhccccchhhhhHHHhcccHHHHHHHHhcchhhhhhhccch
Confidence                            0001 0               0123467999999999999999999999999999999999999


Q ss_pred             eeEeeCCeEEEcCCCchhhhcCCCCChhhHHHHHHHHHHHhhccc-CCCcccccccCCCCCHHHHHHhcCCChhHHHHHh
Q 020312          107 SFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDE-NDPKTHEGMDLTRVTTRELIAKYGLDDNTIDFIG  185 (328)
Q Consensus       107 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~  185 (328)
                      .+....|+...+|.+..+.|.+.-+++.+|+.+++|+.++.++.. ..+...  ......++.+|++..++.+.++.++.
T Consensus       166 ~l~~~eg~l~~VPcSRadvFnsk~LTivEKr~LMKFltfc~~y~tEk~~~~~--~~~~e~~F~EyL~~~rltp~lqs~vl  243 (547)
T KOG4405|consen  166 ILAFREGELEQVPCSRADVFNSKSLTIVEKRMLMKFLTFCQEYLTEKDPDEY--VEFRERPFSEYLKTMRLTPKLQSIVL  243 (547)
T ss_pred             hhcccCCeeeecCchHHhhhcccchhHHHHHHHHHHHHHHHHhhhccCcHHH--HHhhcCcHHHHHHhcCCChhhHHHHH
Confidence            988888999999999999999999999999999999999999842 222211  12355699999999999999999888


Q ss_pred             hhhhcccCCCCCCCchHHHHHHHHHHHHhhhcccCCCeEEeecCCcCcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCc
Q 020312          186 HALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGK  265 (328)
Q Consensus       186 ~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~  265 (328)
                      +++++...+.   ......+.+...|+.++++| |+.||.+|.+|.+.|++.+.+.|.-.|+-.-+..+|+.|..+ .+.
T Consensus       244 ~aIaM~~~~~---~tt~eGm~at~~fl~slGrf-gntpfLfPlYGqGELpQcFCRlcAVfGgIYcLr~~Vq~ivld-k~s  318 (547)
T KOG4405|consen  244 HAIAMLSESQ---LTTIEGMDATKNFLTSLGRF-GNTPFLFPLYGQGELPQCFCRLCAVFGGIYCLRRPVQAIVLD-KES  318 (547)
T ss_pred             HHHHhcCccc---ccHHHHHHHHHHHHHHhhcc-CCCcceeeccCCCcchHHHHHHHHHhcceEEeccchhheeec-ccc
Confidence            8877654321   34567788899999999999 999999999999999999999999999999999999999998 433


Q ss_pred             EE---EEEecCceEEcCEEEECCCCCcc
Q 020312          266 VV---GVTSEGETAKCKKVVCDPSYLPN  290 (328)
Q Consensus       266 v~---~v~~~g~~~~ad~vV~~~~~~~~  290 (328)
                      ..   ++...|+++.|+++|+.+.++|.
T Consensus       319 ~~~~~~l~s~g~ri~~k~~v~s~~y~pe  346 (547)
T KOG4405|consen  319 LDCKAILDSFGQRINAKNFVVSPSYAPE  346 (547)
T ss_pred             cchhhhHhhhcchhcceeeeecCccccc
Confidence            32   34447889999999999998775

>PLN02612 phytoene desaturase

Probab=99.92  E-value=3e-23  Score=193.06  Aligned_cols=287  Identities=15%  Similarity=0.136  Sum_probs=172.5

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCcccccchHHHHhhhcCCCCCCCccCCCCCeEEecCcceEecC
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIAN   83 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~   83 (328)
                      ..+|+|||||++||+||++|+++|++|+|+|+++++||++.++...                   .++.+|.|.|++...
T Consensus        93 ~~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e~~~~~gG~~~s~~~~-------------------~G~~~D~G~h~~~g~  153 (567)
T PLN02612         93 PLKVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGKVAAWKDE-------------------DGDWYETGLHIFFGA  153 (567)
T ss_pred             CCCEEEECCCHHHHHHHHHHHhcCCeEEEEecCCCCCCcceeeEcC-------------------CCCEEcCCceEEeCC
Confidence            5799999999999999999999999999999999999999987531                   458899999999876


Q ss_pred             ch-HHHHHHhcCCCCeeEEEeeCceeEee--CCeEE--EcCC---Cch----hhhc-CCCCChhhHHHHHHHHHHHhhcc
Q 020312           84 GA-LVRVLIHTDVTKYLYFKAVDGSFVYN--KGKVH--KVPA---TDM----EALK-SPLMGIFEKRRARKFFIYVQDYD  150 (328)
Q Consensus        84 ~~-~~~~~~~~~~~~~l~~~~~~~~~~~~--~g~~~--~~~~---~~~----~~~~-~~~~~~~~~~~~~~~~~~~~~~~  150 (328)
                      .+ +.+.+.+.++...+.+......+.+.  .+...  .+|.   ...    ..+. ...+++.++...  .........
T Consensus       154 ~~~~~~ll~elG~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~P~~l~~~~~~l~~~~~ls~~~kl~~--~~~~~~~~~  231 (567)
T PLN02612        154 YPNVQNLFGELGINDRLQWKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGIWAILRNNEMLTWPEKIKF--AIGLLPAIV  231 (567)
T ss_pred             CchHHHHHHHhCCcccceecccceEEEecCCCCceeeCcCchhcCChhhhhHHHHhcCccCCHHHHHHH--HHhhhHHhc
Confidence            44 44555566665554443322222221  12221  1221   100    1110 111222221110  000000000


Q ss_pred             cCCCcccccccCCCCCHHHHHHhcCCChhHH-HHHhhhh-hcccCCCCCCCchHHHHHHHHHHHHhhhcccCCCeEEeec
Q 020312          151 ENDPKTHEGMDLTRVTTRELIAKYGLDDNTI-DFIGHAL-ALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPL  228 (328)
Q Consensus       151 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~-~~~~~~~-~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~  228 (328)
                      ...+   .....+..|+.+|+++.++++.+. +++.+++ +++.. +....+....+..+..+   +... ......++.
T Consensus       232 ~~~~---~~~~~d~~Sv~e~l~~~~~~~~~~~~~~~~l~~~~~~~-~p~~~S~~~~l~~l~~~---l~~~-~gs~~~~~~  303 (567)
T PLN02612        232 GGQA---YVEAQDGLSVKEWMRKQGVPDRVNDEVFIAMSKALNFI-NPDELSMQCILIALNRF---LQEK-HGSKMAFLD  303 (567)
T ss_pred             ccch---hhhhcCcCcHHHHHHhcCCCHHHHHHHHHHHHHHhcCC-CHHHhhHHHHHHHHHHH---Hhcc-CCceEeeec
Confidence            0000   011336799999999999988774 4666544 22221 11111222222222222   2211 234455666


Q ss_pred             CCc-CcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe-cCceEEcCEEEECCCC------Ccc-----h----
Q 020312          229 YGL-GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSY------LPN-----K----  291 (328)
Q Consensus       229 gG~-~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~-~g~~~~ad~vV~~~~~------~~~-----~----  291 (328)
                      |+. ..++++|++.++++|++|++|++|++|+.++++.++++++ +|+.++||+||++.+.      +++     .    
T Consensus       304 G~~~~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~v~~~~G~~~~ad~VI~a~p~~~l~~Ll~~~~~~~~~~~~  383 (567)
T PLN02612        304 GNPPERLCMPIVDHFQSLGGEVRLNSRIKKIELNDDGTVKHFLLTNGSVVEGDVYVSATPVDILKLLLPDQWKEIPYFKK  383 (567)
T ss_pred             CCchHHHHHHHHHHHHhcCCEEEeCCeeeEEEECCCCcEEEEEECCCcEEECCEEEECCCHHHHHHhCcchhcCcHHHHH
Confidence            664 6799999999999999999999999999864666777776 7888999999988754      121     1    


Q ss_pred             hhh-hccceeEEeeeehhhhHHHhhheee
Q 020312          292 VII-IMLIGFILIFLVRRILRFFLKHLSI  319 (328)
Q Consensus       292 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  319 (328)
                      +.+ ...+.+++++++++....-..|+.+
T Consensus       384 l~~l~~~~v~~v~l~~dr~~~~~~~~~~~  412 (567)
T PLN02612        384 LDKLVGVPVINVHIWFDRKLKNTYDHLLF  412 (567)
T ss_pred             HHhcCCCCeEEEEEEECcccCCCCCceee
Confidence            112 4667889999999986422344444

>TIGR02732 zeta_caro_desat carotene 7,8-desaturase

Probab=99.90  E-value=1.8e-21  Score=177.89  Aligned_cols=280  Identities=16%  Similarity=0.138  Sum_probs=164.5

Q ss_pred             cEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCcccccchHHHHhhhcCCCCCCCccCCCCCeEEecCcceEecCch
Q 020312            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIANGA   85 (328)
Q Consensus         6 dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~   85 (328)
                      +|+|||||++||+||++|+++|++|+|+|+++++||+++++...                   .++.+|.|+|++....+
T Consensus         1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~~~-------------------~g~~~d~G~~~~~~~~~   61 (474)
T TIGR02732         1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRSFIGGKVGSWVDG-------------------DGNHIEMGLHVFFGCYA   61 (474)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCceeeeeecC-------------------CCceEeeceEEecCchH
Confidence            58999999999999999999999999999999999999987421                   46889999999886644


Q ss_pred             -HHHHHHhcCCCCeeEEEeeCceeEeeCCeEEE--------cCC-CchhhhcCCCCChhhHHHHHHHH---HHHhhcccC
Q 020312           86 -LVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHK--------VPA-TDMEALKSPLMGIFEKRRARKFF---IYVQDYDEN  152 (328)
Q Consensus        86 -~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~--------~~~-~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~  152 (328)
                       +.+.+.+.++.+.+........+...++....        .|- .-...+.....++.++-.+....   ...+.....
T Consensus        62 ~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~l~~~~ls~~dklr~~~~~~~~~~~~~~~~~  141 (474)
T TIGR02732        62 NLFRLMKKVGAEDNLLLKEHTHTFVNKGGDIGELDFRFATGAPFNGLKAFFTTSQLKWVDKLRNALALGTSPIVRGLVDY  141 (474)
T ss_pred             HHHHHHHHcCCccccccccceeEEEcCCCcccccccCCCCCCchhhhHHHhcCCCCCHHHHHHHHHHhhhhHHHhhcccc
Confidence             34444456665544333211112212233211        110 11122333444443322211111   111111000


Q ss_pred             CCcccccccCCCCCHHHHHHhcCCChh-HHHHHhhhhhcccCCCCCCCchHHHHHHHHHHHHhhhcccCCCeEEeecCCc
Q 020312          153 DPKTHEGMDLTRVTTRELIAKYGLDDN-TIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGL  231 (328)
Q Consensus       153 ~~~~~~~~~~~~~s~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~gG~  231 (328)
                      .......-..+.+|+.+|+++.+.++. +..++.+.+......+....+....+..+..+.  ...  ..+...+++||.
T Consensus       142 ~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~Pll~~~~~~~~~~~Sa~~~~~~~~~~~--~~~--~~s~~~~~~g~~  217 (474)
T TIGR02732       142 DGAMKTIRDLDKISFAEWFLSHGGSLGSIKRMWDPIAYALGFIDCENISARCMLTIFMLFA--AKT--EASKLRMLKGSP  217 (474)
T ss_pred             chhhhhhhhhccccHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH--hCC--CcceeeeecCCc
Confidence            000000002256999999999999886 567787765322111111112222222222111  111  234567788887


Q ss_pred             Cc-HHHHHHHHHHHcCcEEEcCcceeEEEecC--CC--cEEEEEe-cC---ceEEcCEEEECCCC------Ccc------
Q 020312          232 GE-LPQAFARLSAVYGGTYMLNKPECKVEFDE--EG--KVVGVTS-EG---ETAKCKKVVCDPSY------LPN------  290 (328)
Q Consensus       232 ~~-l~~~l~~~~~~~G~~i~~~~~V~~I~~~~--~~--~v~~v~~-~g---~~~~ad~vV~~~~~------~~~------  290 (328)
                      .. +.+++.+.+++.|++|+++++|++|+.+.  ++  ++++|++ ++   +++.||+||++.+.      +++      
T Consensus       218 ~~~l~~pl~~~L~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~g~~~~~~~aD~VVlA~p~~~~~~Ll~~~~~~~~  297 (474)
T TIGR02732       218 DKYLTKPILEYIEARGGKFHLRHKVREIKYEKSSDGSTRVTGLIMSKPEGKKVIKADAYVAACDVPGIKRLLPQEWRQFE  297 (474)
T ss_pred             chhHHHHHHHHHHHCCCEEECCCEEEEEEEecCCCCceeEEEEEEecCCcceEEECCEEEECCChHHHHhhCChhhhcCH
Confidence            66 77889999999999999999999999862  12  3677666 33   45899999988765      232      


Q ss_pred             ---hhhh-hccceeEEeeeehh
Q 020312          291 ---KVII-IMLIGFILIFLVRR  308 (328)
Q Consensus       291 ---~~~~-~~~~~~~~~~~~~~  308 (328)
                         .+.. ...+..++++.+++
T Consensus       298 ~~~~l~~l~~~pi~~v~l~~~~  319 (474)
T TIGR02732       298 EFDNIYKLDAVPVATVQLRYDG  319 (474)
T ss_pred             HHhhHhcCCCCCeEEEEEEecc
Confidence               1122 44677788888764

Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.

>TIGR02731 phytoene_desat phytoene desaturase

Probab=99.89  E-value=3e-21  Score=176.72  Aligned_cols=276  Identities=15%  Similarity=0.148  Sum_probs=161.6

Q ss_pred             cEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCcccccchHHHHhhhcCCCCCCCccCCCCCeEEecCcceEecCc-
Q 020312            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIANG-   84 (328)
Q Consensus         6 dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-   84 (328)
                      +|+|||||++||+||++|+++|++|+|+|+++++||++.|...                   ..++.+|.|++++.... 
T Consensus         1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~~~GG~~~s~~~-------------------~~g~~~d~G~~~~~~~~~   61 (453)
T TIGR02731         1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLGGKVAAWKD-------------------EDGDWYETGLHIFFGAYP   61 (453)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeEC-------------------CCCCEEEcCcceeccCCc
Confidence            5899999999999999999999999999999999999988742                   13578999999987654 


Q ss_pred             hHHHHHHhcCCCCeeEEEeeCceeEee--CCeEE--EcCC--Cchhh----hc-CCCCChhhHHHHHHHHHHHhhcccCC
Q 020312           85 ALVRVLIHTDVTKYLYFKAVDGSFVYN--KGKVH--KVPA--TDMEA----LK-SPLMGIFEKRRARKFFIYVQDYDEND  153 (328)
Q Consensus        85 ~~~~~~~~~~~~~~l~~~~~~~~~~~~--~g~~~--~~~~--~~~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (328)
                      .+.+.+.+.++...+.+......+...  ++...  ..+.  .....    +. ....++.++..+.  ...........
T Consensus        62 ~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~  139 (453)
T TIGR02731        62 NMLQLLKELNIEDRLQWKSHSMIFNQPDKPGTFSRFDFPDIPAPFNGVAAILRNNDMLTWPEKIKFA--IGLLPAIVRGQ  139 (453)
T ss_pred             hHHHHHHHcCCccceeecCCceEEecCCCCcceeeccCCCCCCCHHHHHHHhcCcCCCCHHHHHHHH--HHhHHHHhcCc
Confidence            445555566765554433322212111  12221  1121  00111    10 0112221211111  00100000000


Q ss_pred             CcccccccCCCCCHHHHHHhcCCChhHH-HHHhhhh-hcccCCCCCCCchHHHHHHHHHHHHhhhcccCCCeEEeecCC-
Q 020312          154 PKTHEGMDLTRVTTRELIAKYGLDDNTI-DFIGHAL-ALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYG-  230 (328)
Q Consensus       154 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~-~~~~~~~-~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~gG-  230 (328)
                      +   .....++.|+.+|+++.++++.+. .++.+++ +++..+ ....+....+..+..+   +... ......+..|+ 
T Consensus       140 ~---~~~~~~~~s~~~~l~~~~~~~~~~~~~~~pl~~~~~~~~-p~~~S~~~~~~~l~~~---~~~~-~g~~~~~~~g~~  211 (453)
T TIGR02731       140 K---YVEEQDKYTVTEWLRKQGVPERVNDEVFIAMSKALNFIN-PDELSMTVVLTALNRF---LQER-HGSKMAFLDGAP  211 (453)
T ss_pred             c---chhhhccCCHHHHHHHcCCCHHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHHH---HhcC-CCCeeEeecCCC
Confidence            0   011236799999999999999864 4666654 332211 1011112212122221   1111 12222344444 


Q ss_pred             cCcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe-cCc-----eEEcCEEEECCCC------Ccch-----hh
Q 020312          231 LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGE-----TAKCKKVVCDPSY------LPNK-----VI  293 (328)
Q Consensus       231 ~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~-~g~-----~~~ad~vV~~~~~------~~~~-----~~  293 (328)
                      ++.++++|.+.+++.|++|++|++|++|+.++++++++|++ +++     ++.||.||++.++      +|+.     +.
T Consensus       212 ~~~l~~~l~~~l~~~g~~i~l~~~V~~I~~~~~~~v~~v~~~~~~~~~~~~~~a~~VI~a~p~~~~~~lL~~~~~~~~~~  291 (453)
T TIGR02731       212 PERLCQPIVDYITSRGGEVRLNSRLKEIVLNEDGSVKHFVLADGEGQRRFEVTADAYVSAMPVDIFKLLLPQPWKQMPFF  291 (453)
T ss_pred             hHHHHHHHHHHHHhcCCEEeCCCeeEEEEECCCCCEEEEEEecCCCCceeEEECCEEEEcCCHHHHHhhCchhhhcCHHH
Confidence            46799999999999999999999999998764666878877 555     7999999988764      2221     11


Q ss_pred             h-----hccceeEEeeeehhhh
Q 020312          294 I-----IMLIGFILIFLVRRIL  310 (328)
Q Consensus       294 ~-----~~~~~~~~~~~~~~~~  310 (328)
                      +     ...+.+++++.+++..
T Consensus       292 ~~~~~~~~~~~~~v~l~~~~~~  313 (453)
T TIGR02731       292 QKLNGLEGVPVINVHIWFDRKL  313 (453)
T ss_pred             HHhhcCCCCcEEEEEEEEcccc
Confidence            1     2457788899888864

Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.

>PLN02487 zeta-carotene desaturase

Probab=99.88  E-value=7.2e-21  Score=175.33  Aligned_cols=260  Identities=17%  Similarity=0.150  Sum_probs=156.0

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCcccccchHHHHhhhcCCCCCCCccCCCCCeEEecCcceEecCc
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIANG   84 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~   84 (328)
                      .+|+|||||++||++|++|+++|++|+|+|+++++||++.++...                   .++.+|.|+|++....
T Consensus        76 ~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~~~gG~~~s~~~~-------------------~g~~~e~G~h~~~~~~  136 (569)
T PLN02487         76 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIGGKVGSFVDK-------------------NGNHIEMGLHVFFGCY  136 (569)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCeeEEEecCCCCCCceeeeeec-------------------CCcEEecceeEecCCc
Confidence            599999999999999999999999999999999999999888421                   4678899999987654


Q ss_pred             -hHHHHHHhcCCCCeeEEEeeCceeEeeCCeEEE----cCCCch-----hhhcCCCCChhhHHHHHHH---HHHHhhccc
Q 020312           85 -ALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHK----VPATDM-----EALKSPLMGIFEKRRARKF---FIYVQDYDE  151 (328)
Q Consensus        85 -~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~----~~~~~~-----~~~~~~~~~~~~~~~~~~~---~~~~~~~~~  151 (328)
                       ++...+.+.++...+.+......+...++....    .|...+     ..+....+++.++-....-   ...+.....
T Consensus       137 ~~~~~ll~~LGl~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~pl~~~~~~l~~~~Ls~~dklr~~~~l~~~~~~~al~~  216 (569)
T PLN02487        137 NNLFRLMKKVGADENLLVKDHTHTFVNKGGDVGELDFRFPVGAPLHGIKAFLTTNQLEPYDKARNALALATSPVVRALVD  216 (569)
T ss_pred             HHHHHHHHhcCCcccccccccceeEEecCCEEeeeccCCCCCchhhhHHHHHcCCCCCHHHHHhhcccccccchhhhccC
Confidence             455556666776554433211112222333311    121111     1122233332222111000   000000000


Q ss_pred             CCCcccccccCCCCCHHHHHHhcCCChh-HHHHHhhhhhcccCCCCCCCchHHHHHHHHHHHHhhhcccCCCeEEeecCC
Q 020312          152 NDPKTHEGMDLTRVTTRELIAKYGLDDN-TIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYG  230 (328)
Q Consensus       152 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~gG  230 (328)
                      ........-..+++|+.+|+++.+.++. +..++.+.+......+....+....+..+..+.   ... ......+++||
T Consensus       217 ~~~~~~~~~~~d~~sv~~~l~r~~g~~~~~~~l~dPll~~~~~~~~d~~SA~~~~~vl~~~~---~~~-~~~~l~~~~Gg  292 (569)
T PLN02487        217 PDGAMRDIRDLDDISFSDWFTSHGGTRMSIKRMWDPIAYALGFIDCDNISARCMLTIFSLFA---TKT-EASLLRMLKGS  292 (569)
T ss_pred             ccccccccccccCCcHHHHHHHhCCCHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHh---hcC-CcceeeecCCC
Confidence            0000000012356999999999988875 467887765322222211112222222222111   011 23447888999


Q ss_pred             cCc-HHHHHHHHHHHcCcEEEcCcceeEEEecC--CC--cEEEEEe--c--CceEEcCEEEECCCC
Q 020312          231 LGE-LPQAFARLSAVYGGTYMLNKPECKVEFDE--EG--KVVGVTS--E--GETAKCKKVVCDPSY  287 (328)
Q Consensus       231 ~~~-l~~~l~~~~~~~G~~i~~~~~V~~I~~~~--~~--~v~~v~~--~--g~~~~ad~vV~~~~~  287 (328)
                      +.. |++++++.++++|++|+++++|++|..+.  ++  ++++|++  +  ++.+.||.||++++.
T Consensus       293 ~~~~l~~pl~~~L~~~Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~~~~~~~~~aD~VV~A~p~  358 (569)
T PLN02487        293 PDVRLSGPIAKYITDRGGRFHLRWGCREILYDKSPDGETYVTGLKVSKATEKEIVKADAYVAACDV  358 (569)
T ss_pred             chHHHHHHHHHHHHHcCCEEEeCCceEEEEEecCCCCceeEEEEEEecCCCceEEECCEEEECCCH
Confidence            985 99999999999999999999999999872  22  3777776  3  346899999998775

>COG1231 Monoamine oxidase [Amino acid transport and metabolism]

Probab=99.85  E-value=8.5e-21  Score=164.25  Aligned_cols=47  Identities=28%  Similarity=0.367  Sum_probs=44.2

Q ss_pred             CCcccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCcccccch
Q 020312            2 DEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNL   48 (328)
Q Consensus         2 ~~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~   48 (328)
                      ++..||||||+|++||++|++|.++|++|+|||+++++|||+.+.+.
T Consensus         5 ~~~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r~GGR~~t~r~   51 (450)
T COG1231           5 PKTADVIIVGAGLAGLSAAYELKKAGYQVQILEARDRVGGRSLTARA   51 (450)
T ss_pred             CCCCcEEEECCchHHHHHHHHHhhcCcEEEEEeccCCcCceeEEEec
Confidence            35789999999999999999999999999999999999999999864

>PLN02268 probable polyamine oxidase

Probab=99.84  E-value=1.5e-20  Score=171.28  Aligned_cols=235  Identities=16%  Similarity=0.139  Sum_probs=123.7

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCcccccchHHHHhhhcCCCCCCCccCCCCCeEEecCcceEecC-
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIAN-   83 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-   83 (328)
                      .+|+|||||+|||+||++|.++|++|+|||+++++||++.|...                    .++.+|+|++|+... 
T Consensus         1 ~~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~GGri~t~~~--------------------~g~~~d~G~~~i~~~~   60 (435)
T PLN02268          1 PSVIVIGGGIAGIAAARALHDASFKVTLLESRDRIGGRVHTDYS--------------------FGFPVDMGASWLHGVC   60 (435)
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCceeeecCc--------------------CCcccCCCCeeEeccC
Confidence            37999999999999999999999999999999999999998743                    357899999999742 


Q ss_pred             --chHHHHHHhcCCCCeeEEEeeCceeEeeCC-eEEEcCCCchhhhcCCCCChhhHHHHHHHHHHHhhcccCCCcccccc
Q 020312           84 --GALVRVLIHTDVTKYLYFKAVDGSFVYNKG-KVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGM  160 (328)
Q Consensus        84 --~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (328)
                        +++..++.+.++...-  ......+.+..+ ..+.+.......+.......+. ..+.++.........        .
T Consensus        61 ~~~~~~~l~~~lgl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--------~  129 (435)
T PLN02268         61 NENPLAPLIGRLGLPLYR--TSGDNSVLYDHDLESYALFDMDGNQVPQELVTKVG-ETFERILEETEKVRD--------E  129 (435)
T ss_pred             CCchHHHHHHHhCCceEe--ccCCccccccccccccceecCCCCCCCHHHHHHHH-HHHHHHHHHHHHHHh--------c
Confidence              3455555555553220  111111111111 1000000000000000000000 111122222111100        0


Q ss_pred             cCCCCCHHHHHHhcCCCh-------hHHHHHhhhh---hcccCCCCCCCchHHHHHHHHHHHHhhhcccCCCeEEeecCC
Q 020312          161 DLTRVTTRELIAKYGLDD-------NTIDFIGHAL---ALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYG  230 (328)
Q Consensus       161 ~~~~~s~~~~~~~~~~~~-------~~~~~~~~~~---~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~gG  230 (328)
                      ..+..|+.++++++.-..       ..++++...+   ..+...+....+    +..+   .. ...+.|..  ....+|
T Consensus       130 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls----~~~~---~~-~~~~~g~~--~~~~~G  199 (435)
T PLN02268        130 HEEDMSLLQAISIVLERHPELRLEGLAHEVLQWYLCRMEGWFAADADTIS----LKSW---DQ-EELLEGGH--GLMVRG  199 (435)
T ss_pred             cCCCcCHHHHHHHHhhhCcccccchHHHHHHHHHHHHHHHHhCCChHhCc----hhhc---CC-ccccCCCc--eeecCC
Confidence            125678888775542111       1122221111   111111110001    0000   00 00011221  345678


Q ss_pred             cCcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe-cCceEEcCEEEECCCC
Q 020312          231 LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSY  287 (328)
Q Consensus       231 ~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~-~g~~~~ad~vV~~~~~  287 (328)
                      ++.++++|++     +++|++|++|++|..+ ++.+. |++ +++++.||+||+++++
T Consensus       200 ~~~l~~~l~~-----~~~i~~~~~V~~i~~~-~~~v~-v~~~~g~~~~ad~VIva~P~  250 (435)
T PLN02268        200 YDPVINTLAK-----GLDIRLNHRVTKIVRR-YNGVK-VTVEDGTTFVADAAIIAVPL  250 (435)
T ss_pred             HHHHHHHHhc-----cCceeCCCeeEEEEEc-CCcEE-EEECCCcEEEcCEEEEecCH
Confidence            8888888753     5689999999999987 55544 555 7778999999987654

>PRK13977 myosin-cross-reactive antigen; Provisional

Probab=99.83  E-value=5.8e-19  Score=159.95  Aligned_cols=239  Identities=13%  Similarity=0.206  Sum_probs=142.2

Q ss_pred             cccEEEECCChhHHHHHHhhhhC----CCeEEEeccCCCCCCcccccchHHHHhhhcCCCCCCCccCCCCCeEEecCcce
Q 020312            4 EYDVIVLGTGLKECILSGLLSVD----GLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKF   79 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~----G~~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~   79 (328)
                      +.+|+|||||++||+||++|++.    |++|+|||+++.+||++.+....                  ..+|.++.|+..
T Consensus        22 ~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~~GG~~~~~~~~------------------~~Gy~~~~G~~~   83 (576)
T PRK13977         22 NKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDVPGGSLDGAGNP------------------EKGYVARGGREM   83 (576)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCCCCCCccCcccc------------------cCCEEEECCCCc
Confidence            57999999999999999999995    68999999999999999876421                  256888888775


Q ss_pred             EecCchHHHHHHhc---------CCCCeeEEEeeCcee---Ee--eCCeEEEcCCCchhhhcCCCCChhhHHHHHHHHHH
Q 020312           80 IIANGALVRVLIHT---------DVTKYLYFKAVDGSF---VY--NKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIY  145 (328)
Q Consensus        80 ~~~~~~~~~~~~~~---------~~~~~l~~~~~~~~~---~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (328)
                      ......+.+++...         -..+++.+...++.+   .+  .+|..+.          ....++ ..+....++..
T Consensus        84 ~~~y~~l~~ll~~ipsle~~g~sv~dd~~~~~~~~p~~s~~Rl~~~~g~~~d----------~~~~~L-~~k~r~~Ll~l  152 (576)
T PRK13977         84 ENHFECLWDLFRSIPSLEDPGASVLDEFYWFNKDDPNYSKARLIHKRGEILD----------TDKFGL-SKKDRKELLKL  152 (576)
T ss_pred             cchHHHHHHHHHhccccCCCCcccccceeeeecCCcccceeeEEcCCCCEEE----------CcCCCC-CHHHHHHHHHH
Confidence            33333444444222         122444454444432   11  1222221          122222 22333444443


Q ss_pred             HhhcccCCCcccccccCCCCCHHHHHHhcCCChhHHHHHhhhhhcccCCCCCCCchHHHHHHHHHHHHhhhcccCCCeEE
Q 020312          146 VQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYI  225 (328)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~  225 (328)
                      +..-.         -.++..++.||+++.++...+..++...++..   .  ..++......+.+|...+....-.+...
T Consensus       153 ~l~~e---------~~Ld~~tI~d~f~~~Ff~t~Fw~~w~t~FaF~---~--whSA~E~rry~~rf~~~~~~l~~~s~l~  218 (576)
T PRK13977        153 LLTPE---------EKLDDKTIEDWFSPEFFETNFWYYWRTMFAFE---K--WHSALEMRRYMHRFIHHIGGLPDLSGLK  218 (576)
T ss_pred             hccCH---------HHhCCcCHHHHHhhcCchhHHHHHHHHHHCCc---h--hhHHHHHHHHHHHHHHhhccCCcccccc
Confidence            32211         12478999999998777665555444433211   1  1223333333434422222221123333


Q ss_pred             eecCC-cCcHHHHHHHHHHHcCcEEEcCcceeEEEec-CC--CcEEEEEe--cCc-----eEEcCEEEECC
Q 020312          226 YPLYG-LGELPQAFARLSAVYGGTYMLNKPECKVEFD-EE--GKVVGVTS--EGE-----TAKCKKVVCDP  285 (328)
Q Consensus       226 ~~~gG-~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~-~~--~~v~~v~~--~g~-----~~~ad~vV~~~  285 (328)
                      +.++. ..+++..|.+.++++|++|+++++|++|..+ ++  ++|+++..  +|+     ...+|.||++.
T Consensus       219 ft~ynqyeSLV~PL~~~Le~~GV~f~~~t~VtdL~~~~d~~~~~VtgI~~~~~~~~~~I~l~~~DlVivTn  289 (576)
T PRK13977        219 FTKYNQYESLVLPLIKYLEDHGVDFQYGTKVTDIDFDITGGKKTATAIHLTRNGKEETIDLTEDDLVFVTN  289 (576)
T ss_pred             CCCCCchhHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCCceEEEEEEEEeCCceeEEEecCCCEEEEeC
Confidence            43444 4679999999999999999999999999985 23  56888876  232     24577777543

>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]

Probab=99.81  E-value=2e-18  Score=143.46  Aligned_cols=250  Identities=16%  Similarity=0.134  Sum_probs=145.3

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCcccccchHHHHhhhcCCCCCCCccCCCCCeEEecCcceEec-
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIA-   82 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-   82 (328)
                      ..+|+|||+|++||||||.|+++ ++|+++|+++++||+++|...+-                ..+++.+|.|...+.. 
T Consensus         8 r~~IAVIGsGisGLSAA~~Ls~r-hdVTLfEA~~rlGGha~Tv~~~~----------------d~~g~~vDtGfiVyn~~   70 (447)
T COG2907           8 RRKIAVIGSGISGLSAAWLLSRR-HDVTLFEADRRLGGHANTVAGNT----------------DGGGVFVDTGFIVYNER   70 (447)
T ss_pred             CcceEEEcccchhhhhHHhhhcc-cceEEEeccccccCccceeeccc----------------cCCceeecceeEEecCC
Confidence            47999999999999999999976 99999999999999999985320                1256788988888765 


Q ss_pred             C-chHHHHHHhcCCCCe---eEE--EeeCceeEeeCCeEEEcCCCchhhhcCCCCChhhHHHHHHHHHHHhhcccCCCcc
Q 020312           83 N-GALVRVLIHTDVTKY---LYF--KAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKT  156 (328)
Q Consensus        83 ~-~~~~~~~~~~~~~~~---l~~--~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (328)
                      . ..+.+++...+..-.   +.+  .-..+.+.|......    ...-.....+...-....+...+.+-+.    ....
T Consensus        71 tYpnl~~Lf~~iGv~t~as~Msf~v~~d~gglEy~g~tgl----~~L~aqk~n~l~pRf~~mlaeiLrf~r~----~~~~  142 (447)
T COG2907          71 TYPNLTRLFKTIGVDTKASFMSFSVSLDMGGLEYSGLTGL----AGLLAQKRNLLRPRFPCMLAEILRFYRS----DLAP  142 (447)
T ss_pred             CcchHHHHHHHcCCCCcccceeEEEEecCCceeeccCCCc----cchhhccccccchhHHHHHHHHHHHhhh----hccc
Confidence            3 345555555543211   111  111222222211100    0001111111111111122222222221    0011


Q ss_pred             cccccCCCCCHHHHHHhcCCChhH-HHHHhhhh-hcccCC--CCCCCchHHHHHHHHHHHHhhhcccCCCeEEeecCCcC
Q 020312          157 HEGMDLTRVTTRELIAKYGLDDNT-IDFIGHAL-ALHRDD--RYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLG  232 (328)
Q Consensus       157 ~~~~~~~~~s~~~~~~~~~~~~~~-~~~~~~~~-~l~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~gG~~  232 (328)
                      .+.......++.+|+++.++++.+ .+++.|+. ++|.+.  +....|+...+ ++...+.++.- .+...+..+.||..
T Consensus       143 ~d~~~~~~~tl~~~L~~~~f~~af~e~~l~P~~aaiwstp~~d~~~~pa~~~~-~f~~nhGll~l-~~rp~wrtV~ggS~  220 (447)
T COG2907         143 SDNAGQGDTTLAQYLKQRNFGRAFVEDFLQPLVAAIWSTPLADASRYPACNFL-VFTDNHGLLYL-PKRPTWRTVAGGSR  220 (447)
T ss_pred             hhhhcCCCccHHHHHHhcCccHHHHHHhHHHHHHHHhcCcHhhhhhhhHHHHH-HHHhccCceec-CCCCceeEcccchH
Confidence            111223568999999999999987 45777754 344321  11112222222 22222333332 23445566679988


Q ss_pred             cHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEecCceEEcCEEEEC
Q 020312          233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCD  284 (328)
Q Consensus       233 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~~g~~~~ad~vV~~  284 (328)
                      ..++.|+   ..-+++|.++++|+.|.+- .+.++.+..+|++-++|.||.+
T Consensus       221 ~yvq~la---a~~~~~i~t~~~V~~l~rl-PdGv~l~~~~G~s~rFD~vViA  268 (447)
T COG2907         221 AYVQRLA---ADIRGRIETRTPVCRLRRL-PDGVVLVNADGESRRFDAVVIA  268 (447)
T ss_pred             HHHHHHh---ccccceeecCCceeeeeeC-CCceEEecCCCCccccceeeee
Confidence            8888875   3346789999999999998 6666666668999999997743

>PLN02568 polyamine oxidase

Probab=99.81  E-value=2.9e-19  Score=164.67  Aligned_cols=75  Identities=11%  Similarity=0.266  Sum_probs=62.6

Q ss_pred             CCCcccEEEECCChhHHHHHHhhhhCC-----CeEEEeccCCCCCCcccccchHHHHhhhcCCCCCCCccCCCCCeEEec
Q 020312            1 MDEEYDVIVLGTGLKECILSGLLSVDG-----LKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDM   75 (328)
Q Consensus         1 ~~~~~dvvIvG~G~aGl~aA~~L~~~G-----~~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   75 (328)
                      |++..||+|||||++||+||++|++.|     ++|+|||+++++||++.|...                    .++.+|+
T Consensus         2 ~~~~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~GGr~~t~~~--------------------~g~~~d~   61 (539)
T PLN02568          2 VAKKPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIGGRINTSEF--------------------GGERIEM   61 (539)
T ss_pred             CCCCCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCcCCeEEEEEe--------------------CCeEEec
Confidence            456789999999999999999999887     999999999999999999864                    4588999


Q ss_pred             CcceEecC--chHHHHHHhcCC
Q 020312           76 IPKFIIAN--GALVRVLIHTDV   95 (328)
Q Consensus        76 g~~~~~~~--~~~~~~~~~~~~   95 (328)
                      |++++...  +++..++.+.++
T Consensus        62 G~~~~~g~~~~~~~~l~~~~g~   83 (539)
T PLN02568         62 GATWIHGIGGSPVYKIAQEAGS   83 (539)
T ss_pred             CCceeCCCCCCHHHHHHHHhCC
Confidence            99999853  455555555554

>PLN02676 polyamine oxidase

Probab=99.81  E-value=7.3e-19  Score=160.91  Aligned_cols=241  Identities=15%  Similarity=0.238  Sum_probs=125.8

Q ss_pred             CcccEEEECCChhHHHHHHhhhhCCC-eEEEeccCCCCCCcccccchHHHHhhhcCCCCCCCccCCCCCeEEecCcceEe
Q 020312            3 EEYDVIVLGTGLKECILSGLLSVDGL-KVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFII   81 (328)
Q Consensus         3 ~~~dvvIvG~G~aGl~aA~~L~~~G~-~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~   81 (328)
                      ..+||+|||||++||+||++|+++|. +|+|||+++++||++.+...                    .++.+|+|++|+.
T Consensus        25 ~~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~~GG~~~~~~~--------------------~g~~~d~g~~~~~   84 (487)
T PLN02676         25 PSPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRIGGRMRKANF--------------------AGVSVELGANWVE   84 (487)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCCCCCcceeecC--------------------CCeEEecCCEEEE
Confidence            35899999999999999999999998 69999999999999988753                    3578999999996


Q ss_pred             c-----CchHHHHHHhcCCCCeeEEEeeC--ceeEe-eCCeEEEcCCCchhhhcCCCCChhhHHHHHHHHHHHhhcccCC
Q 020312           82 A-----NGALVRVLIHTDVTKYLYFKAVD--GSFVY-NKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDEND  153 (328)
Q Consensus        82 ~-----~~~~~~~~~~~~~~~~l~~~~~~--~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (328)
                      .     .+++.+...+.++....  ...+  ...++ .+|+..  +....+.+.         ..+..+.+....+....
T Consensus        85 ~~~~~~~~~~~~l~~~~g~~~~~--~~~~~~~~~~~~~~g~~~--~~~~~~~~~---------~~~~~~~~~~~~~~~~~  151 (487)
T PLN02676         85 GVGGPESNPIWELANKLKLRTFY--SDFDNLSSNIYKQDGGLY--PKKVVQKSM---------KVADASDEFGENLSISL  151 (487)
T ss_pred             cccCcccChHHHHHHhcCCceee--cCccccceeEECCCCCCC--CHHHHHHHH---------HHHHHHHHHHHHHHHhh
Confidence            4     23455555455543221  1111  11122 123222  100000000         01112222111111100


Q ss_pred             CcccccccCCCCCH--HHHHHhcCCChhHHHHHhhhhhcccCCCCCCCchHHHHHHHHHHHHhhhcccCCCeEEee-cCC
Q 020312          154 PKTHEGMDLTRVTT--RELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYP-LYG  230 (328)
Q Consensus       154 ~~~~~~~~~~~~s~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~-~gG  230 (328)
                      .    ....+..++  .+.+.+.. +..........+...  ..+..++...++..+.. ....... |...++.. ++|
T Consensus       152 ~----~~~~~~~s~~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~S~~~~~~-~~~~~~~-g~~~~~~~~~~G  222 (487)
T PLN02676        152 S----AKKAVDISILTAQRLFGQV-PKTPLEMVIDYYNYD--YEFAEPPRVTSLKNTEP-NPTFVDF-GEDEYFVADPRG  222 (487)
T ss_pred             c----ccCCCCccHHHHHHHHhhC-CCCHHHHHHHHHhcc--ceeccCccccchhhcCc-ccccccC-CCceEEeecCCC
Confidence            0    001134455  22333321 111111111111000  00011111111111000 0011111 22333332 689


Q ss_pred             cCcHHHHHHHHHHHc------CcEEEcCcceeEEEecCCCcEEEEEe-cCceEEcCEEEECCCC
Q 020312          231 LGELPQAFARLSAVY------GGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSY  287 (328)
Q Consensus       231 ~~~l~~~l~~~~~~~------G~~i~~~~~V~~I~~~~~~~v~~v~~-~g~~~~ad~vV~~~~~  287 (328)
                      +++|++.|++.+.+.      +.+|++|++|++|..+ ++.| .|++ +|++++||+||++.++
T Consensus       223 ~~~l~~~La~~~~~~~~~~~~~~~I~l~~~V~~I~~~-~~gV-~V~~~~G~~~~a~~VIvtvPl  284 (487)
T PLN02676        223 YESLVYYLAEQFLSTKSGKITDPRLKLNKVVREISYS-KNGV-TVKTEDGSVYRAKYVIVSVSL  284 (487)
T ss_pred             HHHHHHHHHhhcccccccccCCCceecCCEeeEEEEc-CCcE-EEEECCCCEEEeCEEEEccCh
Confidence            999999998765432      3679999999999988 5554 4555 7778999999998764

>PLN02529 lysine-specific histone demethylase 1

Probab=99.80  E-value=5.7e-19  Score=166.09  Aligned_cols=236  Identities=16%  Similarity=0.180  Sum_probs=131.3

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCcccccchHHHHhhhcCCCCCCCccCCCCCeEEecCcceEecC
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIAN   83 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~   83 (328)
                      +.||+|||||++||+||..|+++|++|+|+|+++++||++.|...+.                ....+.+|+|+.|++..
T Consensus       160 ~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG~~~t~~~~~----------------~g~~~~~DlGaswi~g~  223 (738)
T PLN02529        160 EGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNRPGGRVYTQKMGR----------------KGQFAAVDLGGSVITGI  223 (738)
T ss_pred             CCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCccCcCceeeecccC----------------CCCceEEecCCeecccc
Confidence            57999999999999999999999999999999999999999886420                01125889999999865


Q ss_pred             c--hHHHHHHhcCCCCeeEEEeeCceeEe-eCCeEEEcCCCchhhhcCCCCChhhHHHHHHHHHHHhhcccCCCcccccc
Q 020312           84 G--ALVRVLIHTDVTKYLYFKAVDGSFVY-NKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGM  160 (328)
Q Consensus        84 ~--~~~~~~~~~~~~~~l~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (328)
                      .  ++.....+.++.-+ ..  .+....+ .+|......   .+.   .+...++ ..+.++.+.......         
T Consensus       224 ~~npl~~la~~lgl~~~-~~--~~~~~~~~~~G~~v~~~---~~~---~~~~~~~-~~l~~~~~l~~~~~~---------  284 (738)
T PLN02529        224 HANPLGVLARQLSIPLH-KV--RDNCPLYKPDGALVDKE---IDS---NIEFIFN-KLLDKVTELRQIMGG---------  284 (738)
T ss_pred             ccchHHHHHHHhCCCcc-cc--CCCceEEeCCCcCcchh---hhh---hHHHHHH-HHHHHHHHHHHhccc---------
Confidence            3  33333333333211 01  1111122 233332111   010   0000111 111122111111110         


Q ss_pred             cCCCCCHHHHHHhcC------CChhHHHHHhhhhh-cccCCCCCCCchHHHHHHHHHHHHhhhcccCCCeEEeecCCcCc
Q 020312          161 DLTRVTTRELIAKYG------LDDNTIDFIGHALA-LHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGE  233 (328)
Q Consensus       161 ~~~~~s~~~~~~~~~------~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~gG~~~  233 (328)
                      ..+..|+.+++++..      +++..++++..... +...  .  ......+. ...|..... +..........||+++
T Consensus       285 ~~~d~Sl~~~le~~~~~~~~~~t~~e~~ll~~~~~~le~a--~--~~~~s~LS-l~~~~~~~~-~e~~G~~~~i~GG~~~  358 (738)
T PLN02529        285 FANDISLGSVLERLRQLYGVARSTEERQLLDWHLANLEYA--N--AGCLSDLS-AAYWDQDDP-YEMGGDHCFLAGGNWR  358 (738)
T ss_pred             CccCCCHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhcee--c--CCChHHhh-hhHhhhccc-cccCCceEEECCcHHH
Confidence            125678999886543      33333333332221 1110  0  00011111 111111100 1122345677899999


Q ss_pred             HHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEecCceEEcCEEEECCCC
Q 020312          234 LPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSY  287 (328)
Q Consensus       234 l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~~g~~~~ad~vV~~~~~  287 (328)
                      |+++|++     +..|++|++|++|..+ ++.| .|+++++++.||+||+|.++
T Consensus       359 Li~aLA~-----~L~IrLnt~V~~I~~~-~dGV-tV~t~~~~~~AD~VIVTVPl  405 (738)
T PLN02529        359 LINALCE-----GVPIFYGKTVDTIKYG-NDGV-EVIAGSQVFQADMVLCTVPL  405 (738)
T ss_pred             HHHHHHh-----cCCEEcCCceeEEEEc-CCeE-EEEECCEEEEcCEEEECCCH
Confidence            9999874     3569999999999998 5554 45566678999999998764

>PLN02328 lysine-specific histone demethylase 1 homolog

Probab=99.80  E-value=1.5e-18  Score=163.93  Aligned_cols=239  Identities=14%  Similarity=0.164  Sum_probs=130.0

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCcccccchHHHHhhhcCCCCCCCccCCCCCeEEecCcceEecC
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIAN   83 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~   83 (328)
                      ..+|+|||||++||+||+.|++.|++|+|+|+++++||++.+....+                ....+.+|+|+.|+...
T Consensus       238 ~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~GGr~~t~~~~g----------------~~~~~~~d~Gas~i~g~  301 (808)
T PLN02328        238 PANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARPGGRVKTMKMKG----------------DGVVAAADLGGSVLTGI  301 (808)
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccCCCcccccccCC----------------CCcceeccCCceeecCC
Confidence            47999999999999999999999999999999999999999986531                11235789999999765


Q ss_pred             c--hHHHHHHhcCCCCeeEEEeeCceeEeeCCeEEEcCCCchhhhcCCCCChhhHHHHHHHHHHHhhccc-CCCcccccc
Q 020312           84 G--ALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDE-NDPKTHEGM  160 (328)
Q Consensus        84 ~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  160 (328)
                      .  ++.....+.++... ... ....+.+.+|..+...      +...    .. ..+..+++...++.. ..+    ..
T Consensus       302 ~~npl~~l~~~lgl~~~-~~~-~~~~~~~~dG~~~~~~------~~~~----v~-~~f~~lL~~~~klr~~~~~----~~  364 (808)
T PLN02328        302 NGNPLGVLARQLGLPLH-KVR-DICPLYLPDGKAVDAE------IDSK----IE-ASFNKLLDRVCKLRQAMIE----EV  364 (808)
T ss_pred             CccHHHHHHHHcCCceE-ecC-CCceEEeCCCcCcchh------hhhh----HH-HHHHHHHHHHHHHHHhhhh----cc
Confidence            2  34344444554321 111 1111222344433111      0000    00 011122222111100 000    00


Q ss_pred             cCCCCCHHHHHHhc------CCChhHHHHHhhhhhcccCCCCCCCchHHHHHHHHHHHHhhhcccCCCeEEeecCCcCcH
Q 020312          161 DLTRVTTRELIAKY------GLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGEL  234 (328)
Q Consensus       161 ~~~~~s~~~~~~~~------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~gG~~~l  234 (328)
                      .....|+.++++++      ..++....++.+.++..   .+........+. +..+.... .+.....+....||++.|
T Consensus       365 ~~~D~SLg~~le~~~~~~~~~~~~~e~~Ll~w~lanl---E~~~gs~ls~LS-l~~w~qd~-~~e~~G~~~~v~GG~~~L  439 (808)
T PLN02328        365 KSVDVNLGTALEAFRHVYKVAEDPQERMLLNWHLANL---EYANASLMSNLS-MAYWDQDD-PYEMGGDHCFIPGGNDTF  439 (808)
T ss_pred             cccCcCHHHHHHHHhhhhccCCCHHHHHHHHHHHHHH---hccchhhHHHHH-hhhhhccc-cccCCCeEEEECCcHHHH
Confidence            11346788887633      12222223332222100   000011111111 11111100 011123356778999999


Q ss_pred             HHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEecCceEEcCEEEECCCC
Q 020312          235 PQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSY  287 (328)
Q Consensus       235 ~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~~g~~~~ad~vV~~~~~  287 (328)
                      +++|++.+     .|++|++|++|..+ ++.+ .|.++|+++.||+||+|.++
T Consensus       440 i~aLa~~L-----~I~ln~~V~~I~~~-~dgV-~V~~~G~~~~AD~VIvTvPl  485 (808)
T PLN02328        440 VRELAKDL-----PIFYERTVESIRYG-VDGV-IVYAGGQEFHGDMVLCTVPL  485 (808)
T ss_pred             HHHHHhhC-----CcccCCeeEEEEEc-CCeE-EEEeCCeEEEcCEEEECCCH
Confidence            99997643     39999999999997 5554 34457889999999998765

>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.79  E-value=7.2e-19  Score=159.42  Aligned_cols=70  Identities=23%  Similarity=0.269  Sum_probs=58.7

Q ss_pred             CcccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCcccccchHHHHhhhcCCCCCCCccCCCCCeEEecCcceEec
Q 020312            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIA   82 (328)
Q Consensus         3 ~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~   82 (328)
                      ++.+|||||||+|||+||.+|.+.|++|+|||+++++|||+.|.+..                   .+-.+|+|.+++..
T Consensus        14 ~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvGGRI~t~~~~-------------------~~~~vd~Gas~~~g   74 (501)
T KOG0029|consen   14 KKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVGGRIYTFKSE-------------------GGDHVDLGASVLTG   74 (501)
T ss_pred             CCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCcCceeEEEecC-------------------CCCeeecCCceecC
Confidence            35799999999999999999999999999999999999999999752                   22369999999987


Q ss_pred             Cch-HHHHHH
Q 020312           83 NGA-LVRVLI   91 (328)
Q Consensus        83 ~~~-~~~~~~   91 (328)
                      ... .+..+.
T Consensus        75 ~~~npl~~l~   84 (501)
T KOG0029|consen   75 VYNNPLALLS   84 (501)
T ss_pred             cCccHHHHHH
Confidence            643 444443

>TIGR03467 HpnE squalene-associated FAD-dependent desaturase

Probab=99.78  E-value=4.9e-17  Score=147.69  Aligned_cols=259  Identities=16%  Similarity=0.155  Sum_probs=148.7

Q ss_pred             HHHHhhhhCCCeEEEeccCCCCCCcccccchHHHHhhhcCCCCCCCccCCCCCeEEecCcceEecCchH-HHHHHhcCCC
Q 020312           18 ILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIANGAL-VRVLIHTDVT   96 (328)
Q Consensus        18 ~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~   96 (328)
                      +||++|+++|++|+|||+++++||++.|.+.++                  .++.+|.|++++...++. .+++.+.++.
T Consensus         1 ~AA~~L~~~G~~v~vlEa~~~~GG~~~t~~~~g------------------~~~~~d~G~~~~~~~~~~~~~l~~~lgl~   62 (419)
T TIGR03467         1 SAAVELARAGARVTLFEARPRLGGRARSFEDGG------------------LGQTIDNGQHVLLGAYTNLLALLRRIGAE   62 (419)
T ss_pred             ChHHHHHhCCCceEEEecCCCCCCceeEeecCC------------------CCcceecCCEEEEcccHHHHHHHHHhCCc
Confidence            589999999999999999999999999986531                  134589999999876544 4444445655


Q ss_pred             CeeEEEeeCceeEe-e-CCeE--EE---cCCC-c-hhhh-cCCCCChhhHHHHHHHHHHHhhcccCCCcccccccCCCCC
Q 020312           97 KYLYFKAVDGSFVY-N-KGKV--HK---VPAT-D-MEAL-KSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVT  166 (328)
Q Consensus        97 ~~l~~~~~~~~~~~-~-~g~~--~~---~~~~-~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  166 (328)
                      ..+....  ..+.+ . ++..  +.   ++.. . ...+ ....++..++..+.+....+.....        ...+..|
T Consensus        63 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~--------~~~~~~s  132 (419)
T TIGR03467        63 PRLQGPR--LPLPFYDPGGRLSRLRLSRLPAPLHLARGLLRAPGLSWADKLALARALLALRRTRF--------RALDDTT  132 (419)
T ss_pred             hhhhccc--CCcceecCCCCceeecCCCCCCCHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhcCc--------cccCCCC
Confidence            4433211  11222 1 2221  11   1110 0 0111 1122222222222222222211110        1236789


Q ss_pred             HHHHHHhcCCChhHHH-HHhhhhh-cccCCCCCCCchHHHHHHHHHHH-HhhhcccCCCeEEeecCCcCcHH-HHHHHHH
Q 020312          167 TRELIAKYGLDDNTID-FIGHALA-LHRDDRYLNEPALDTVKRMKLYA-ESIARFQGGSPYIYPLYGLGELP-QAFARLS  242 (328)
Q Consensus       167 ~~~~~~~~~~~~~~~~-~~~~~~~-l~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~g~~~~~~~~gG~~~l~-~~l~~~~  242 (328)
                      +.+|+++.++++.+.+ ++.+.+. ++. .    ++...+...+.... ..+........+.+|+||++++. ++|++.+
T Consensus       133 ~~~~l~~~~~~~~~~~~~~~p~~~~~~~-~----~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~~~~~~l~~~l  207 (419)
T TIGR03467       133 VGDWLQAAGQSERLIERLWEPLLLSALN-T----PPERASAALAAKVLRDSFLAGRAASDLLLPRVPLSELFPEPARRWL  207 (419)
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHcC-C----CHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCHHHHHHHHHHHHH
Confidence            9999999887877644 5555442 222 1    12111111111111 11211101335789999987765 5588888


Q ss_pred             HHcCcEEEcCcceeEEEecCCCcEEEEE-ecCceEEcCEEEECCCC------Ccc-h----hhh-hccceeEEeeeehhh
Q 020312          243 AVYGGTYMLNKPECKVEFDEEGKVVGVT-SEGETAKCKKVVCDPSY------LPN-K----VII-IMLIGFILIFLVRRI  309 (328)
Q Consensus       243 ~~~G~~i~~~~~V~~I~~~~~~~v~~v~-~~g~~~~ad~vV~~~~~------~~~-~----~~~-~~~~~~~~~~~~~~~  309 (328)
                      ++.|++|++|++|++|+.+ ++++..+. .+++.+.||+||++.+.      +|. .    +.+ ...+..+++++++..
T Consensus       208 ~~~g~~i~~~~~V~~i~~~-~~~~~~~~~~~g~~~~~d~vi~a~p~~~~~~ll~~~~~~~~l~~~~~~~~~~v~l~~~~~  286 (419)
T TIGR03467       208 DSRGGEVRLGTRVRSIEAN-AGGIRALVLSGGETLPADAVVLAVPPRHAASLLPGEDLGALLTALGYSPITTVHLRLDRA  286 (419)
T ss_pred             HHcCCEEEcCCeeeEEEEc-CCcceEEEecCCccccCCEEEEcCCHHHHHHhCCCchHHHHHhhcCCcceEEEEEEeCCC
Confidence            8899999999999999998 66654333 37788999999998764      233 2    222 345667888888876


Q ss_pred             h
Q 020312          310 L  310 (328)
Q Consensus       310 ~  310 (328)
                      .
T Consensus       287 ~  287 (419)
T TIGR03467       287 V  287 (419)
T ss_pred             c
Confidence            4

The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.

>PLN03000 amine oxidase

Probab=99.75  E-value=2.4e-17  Score=155.90  Aligned_cols=237  Identities=14%  Similarity=0.156  Sum_probs=125.4

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCcccccchHHHHhhhcCCCCCCCccCCCCCeEEecCcceEecC
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIAN   83 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~   83 (328)
                      ..+|+|||||++||+||+.|.+.|++|+|+|+++++||++.|....+                ...++.+|+|++|+...
T Consensus       184 ~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~riGGRi~T~~~~g----------------~~~~~~~DlGas~i~g~  247 (881)
T PLN03000        184 KSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPGGRVYTKKMEA----------------NRVGAAADLGGSVLTGT  247 (881)
T ss_pred             CCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcCCCCcceecccC----------------CCCceEeecCCeEEeCC
Confidence            47999999999999999999999999999999999999999986531                11357899999999865


Q ss_pred             c--hHHHHHHhcCCCCeeEEEeeCceeEeeCCeEEEcCCCchhhhcCCCCChhhHHHHHHHHHHHhhcccCCCccccccc
Q 020312           84 G--ALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMD  161 (328)
Q Consensus        84 ~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (328)
                      .  ++..+..+.++.-+ ... ....+...+|+..  +......+..    .+.  .+..-....+......        
T Consensus       248 ~~npl~~L~~qlgl~l~-~~~-~~~~ly~~~Gk~v--~~~~~~~ve~----~fn--~lLd~~~~lr~l~~~~--------  309 (881)
T PLN03000        248 LGNPLGIIARQLGSSLY-KVR-DKCPLYRVDGKPV--DPDVDLKVEV----AFN--QLLDKASKLRQLMGDV--------  309 (881)
T ss_pred             CccHHHHHHHHcCCcee-ecC-CCCeEEEeCCcCC--chhhhhhHHH----HHH--HHHHHHHHHHHHhccc--------
Confidence            3  23333344444311 111 1122222345443  1110000000    011  1111011111111100        


Q ss_pred             CCCCCHHHHHH---hc---CCChhHHHHHhhhhh-cccCCCCCCCchHHHHHHHHHHHHhhhcccCCCeEEeecCCcCcH
Q 020312          162 LTRVTTRELIA---KY---GLDDNTIDFIGHALA-LHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGEL  234 (328)
Q Consensus       162 ~~~~s~~~~~~---~~---~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~gG~~~l  234 (328)
                      ....|+.++++   ++   .+.+....++.+.+. +..    ........+. ...+.... .+.....+...+||++.|
T Consensus       310 ~~D~SLg~aLe~~~~~~g~~~t~e~~~Ll~w~lanLE~----~~as~ls~LS-l~~wdqd~-~~e~~G~~~~v~GG~~~L  383 (881)
T PLN03000        310 SMDVSLGAALETFRQVSGNDVATEEMGLFNWHLANLEY----ANAGLVSKLS-LAFWDQDD-PYDMGGDHCFLPGGNGRL  383 (881)
T ss_pred             CcCCcHHHHHHHHHHHHcccCCHHHHHHHHHHHHHHhc----ccccCHHHHH-HHHhhhcc-cccCCCceEEeCCCHHHH
Confidence            02244444222   11   122211222211111 111    0001111111 11111100 111122355678999999


Q ss_pred             HHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEecCceEEcCEEEECCCC
Q 020312          235 PQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSY  287 (328)
Q Consensus       235 ~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~~g~~~~ad~vV~~~~~  287 (328)
                      +++|++.+     .|+++++|++|..+ ++.+ .|+++++++.||+||+|.++
T Consensus       384 ieaLa~~L-----~I~Ln~~Vt~I~~~-~dgV-~V~~~~~~~~AD~VIvTVPl  429 (881)
T PLN03000        384 VQALAENV-----PILYEKTVQTIRYG-SNGV-KVIAGNQVYEGDMVLCTVPL  429 (881)
T ss_pred             HHHHHhhC-----CcccCCcEEEEEEC-CCeE-EEEECCcEEEeceEEEcCCH
Confidence            99998654     49999999999987 5554 35566678999999988765

>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]

Probab=99.74  E-value=1.3e-17  Score=143.10  Aligned_cols=66  Identities=26%  Similarity=0.367  Sum_probs=62.2

Q ss_pred             CCeEEeecCCcCcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe-cCceEEcCEEEECCCC
Q 020312          221 GSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSY  287 (328)
Q Consensus       221 ~~~~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~-~g~~~~ad~vV~~~~~  287 (328)
                      ...+.||+||++.+..++++.+++.|++|++++.|.+|..+ +|++++|+. +|.+++++.||+|+.+
T Consensus       253 ~g~~~Yp~GG~Gavs~aia~~~~~~GaeI~tka~Vq~Illd-~gka~GV~L~dG~ev~sk~VvSNAt~  319 (561)
T KOG4254|consen  253 KGGWGYPRGGMGAVSFAIAEGAKRAGAEIFTKATVQSILLD-SGKAVGVRLADGTEVRSKIVVSNATP  319 (561)
T ss_pred             CCcccCCCCChhHHHHHHHHHHHhccceeeehhhhhheecc-CCeEEEEEecCCcEEEeeeeecCCch
Confidence            55678999999999999999999999999999999999999 799999998 9999999999999886

>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]

Probab=99.70  E-value=2.5e-16  Score=134.65  Aligned_cols=233  Identities=15%  Similarity=0.129  Sum_probs=141.8

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeE--EEeccCCCCCCcccccchHHHHhhhcCCCCCCCccCCCCCeEEecCcceEe
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKV--LHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFII   81 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V--~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~   81 (328)
                      .++|+|||||++||++||+|++++-+|  +|+|+++|+||+.+|...                   ..++.+|.||+-+.
T Consensus        11 ~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGwirS~r~-------------------~ng~ifE~GPrtlr   71 (491)
T KOG1276|consen   11 GMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGGWIRSDRM-------------------QNGFIFEEGPRTLR   71 (491)
T ss_pred             cceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcccceeeeccC-------------------CCceeeccCCCccC
Confidence            479999999999999999999998665  569999999999999432                   26799999999998


Q ss_pred             cCch----HHHHHHhcCCCCeeEEE-eeCc----eeEeeCCeEEEcCCCchhhhcCCCCChhhHHHHHHHHHHHhhcccC
Q 020312           82 ANGA----LVRVLIHTDVTKYLYFK-AVDG----SFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDEN  152 (328)
Q Consensus        82 ~~~~----~~~~~~~~~~~~~l~~~-~~~~----~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (328)
                      ..++    ...++.++++.+.+... ...+    .+.+..|++..+|.+-.......+.++ .+.-...++....+-...
T Consensus        72 pag~~g~~~l~lv~dLGl~~e~~~i~~~~paaknr~l~~~~~L~~vP~sl~~s~~~~l~p~-~k~L~~a~l~e~fr~~~~  150 (491)
T KOG1276|consen   72 PAGPGGAETLDLVSDLGLEDELQPIDISHPAAKNRFLYVPGKLPTVPSSLVGSLKFSLQPF-GKPLLEAFLRELFRKKVS  150 (491)
T ss_pred             cCCcchhHHHHHHHHcCccceeeecCCCChhhhheeeccCcccccCCcccccccccccCcc-cchhHHHHHhhhccccCC
Confidence            7765    45555566776553322 2222    466678888888866444333333333 222333333222111101


Q ss_pred             CCcccccccCCCCCHHHHHHhcCCChhH-HHHHhhhhh-cccCCCCCCCchHHHHHHHHHHHH-----------h-hhcc
Q 020312          153 DPKTHEGMDLTRVTTRELIAKYGLDDNT-IDFIGHALA-LHRDDRYLNEPALDTVKRMKLYAE-----------S-IARF  218 (328)
Q Consensus       153 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~-~~~~~~~~~-l~~~~~~~~~~~~~~l~~~~~~~~-----------~-~~~~  218 (328)
                      .       +....|+.+|.++. +-+++ ..++.+++. ++. ++....++...+..+....+           . +.+-
T Consensus       151 ~-------~~~dESV~sF~~Rr-fG~eV~d~~isp~i~GiyA-gD~~~LSmk~~F~~l~~~Eqk~Gsi~~G~i~~~~~~~  221 (491)
T KOG1276|consen  151 D-------PSADESVESFARRR-FGKEVADRLISPFIRGIYA-GDPSELSMKSSFGKLWKVEQKHGSIILGTIRAKFARK  221 (491)
T ss_pred             C-------CCccccHHHHHHHh-hhHHHHHHHHHHHhCcccc-CChHHhhHHHHHHHHHHHHHhccchhHHHHHHHHHhh
Confidence            1       22568999998776 33555 456666653 222 22111122222211111000           0 0000


Q ss_pred             --------------cCCCeEEeecCCcCcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCc
Q 020312          219 --------------QGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGK  265 (328)
Q Consensus       219 --------------~g~~~~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~  265 (328)
                                    ...-..+-.+||++.+++++.+.+.+..+.+.+..+++.+.....++
T Consensus       222 ~~k~~e~~~~~~~~~e~~~~~sl~gGle~lP~a~~~~L~~~~v~i~~~~~~~~~sk~~~~~  282 (491)
T KOG1276|consen  222 RTKKAETALSAQAKKEKWTMFSLKGGLETLPKALRKSLGEREVSISLGLKLSGNSKSRSGN  282 (491)
T ss_pred             cCCCccchhhhhhcccccchhhhhhhHhHhHHHHHHHhcccchhhhcccccccccccccCC
Confidence                          01111244578999999999999988889999999999887653343

>COG3349 Uncharacterized conserved protein [Function unknown]

Probab=99.69  E-value=1.4e-16  Score=140.82  Aligned_cols=242  Identities=16%  Similarity=0.149  Sum_probs=137.3

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCcccccchHHHHhhhcCCCCCCCccCCCCCeEEecCcceEecC-
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIAN-   83 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-   83 (328)
                      ++|+|+|||+|||+||++|+++|++|+|+|+++++||.+.|+...                   .+-..+.|-|.+... 
T Consensus         1 ~rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GGk~~s~~~~-------------------dg~~~E~glh~f~~~Y   61 (485)
T COG3349           1 MRVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGGKVASWRDS-------------------DGNHVEHGLHVFFGCY   61 (485)
T ss_pred             CeEEEEcccHHHHHHHHHHHhCCCceEEEeccCccCceeeeeecC-------------------CCCeeeeeeEEechhH
Confidence            479999999999999999999999999999999999999999752                   456778888888766 


Q ss_pred             chHHHHHHhcCCCCeeEEEeeCceeEee---CCeE--EEcCCC------chhhhcCCCCChhhHHHHHHHHHHHhhcccC
Q 020312           84 GALVRVLIHTDVTKYLYFKAVDGSFVYN---KGKV--HKVPAT------DMEALKSPLMGIFEKRRARKFFIYVQDYDEN  152 (328)
Q Consensus        84 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~---~g~~--~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (328)
                      .+++.++.+......+.+......++-.   .|..  +..|..      ..+.+..+....-   ...++.   -.....
T Consensus        62 ~n~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~p~p~~~~~~~l~~~~~~~~---~~~~~~---~~l~~~  135 (485)
T COG3349          62 YNLLTLLKELPIEDRLQLREHTKTFVGSGTRPGAIGRFARPDAPQPTNGLKAFLRLPQLPRR---EKIRFV---LRLGDA  135 (485)
T ss_pred             HHHHHHhhhCCchheeehHhhhhhhcccCCCCCcccccccCCCCCcchhhhhhhhccccCHH---HHhHHh---hccccc
Confidence            4667777666665444443322222111   1221  111110      0111111211111   111111   111000


Q ss_pred             CC-cccccccCCCCCHHHHHHhcCCChhH-HHHHhhh-hhccc--CCCCCCCchHHHHHHHHHHHHhhhcccCCCeEEee
Q 020312          153 DP-KTHEGMDLTRVTTRELIAKYGLDDNT-IDFIGHA-LALHR--DDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYP  227 (328)
Q Consensus       153 ~~-~~~~~~~~~~~s~~~~~~~~~~~~~~-~~~~~~~-~~l~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~  227 (328)
                      +- ......++++.+..||+++.+.+... ++.+.+. .++-.  .+......+...+..+.     +... +..-....
T Consensus       136 ~~g~~~~~~eld~~s~~d~l~~~g~~~~~~k~~~~~~~~~l~f~~~e~~sa~~~lt~~~~~~-----~~~~-~~~i~~~~  209 (485)
T COG3349         136 PIGADRSLRELDKISFADWLKEKGAREGAYKAAFAPIALALTFIDPEGCSARFFLTILNLFL-----IVTL-EASILRNL  209 (485)
T ss_pred             cchhHHHHHHHhcccHHHHHHHhCCCchhHHHHHHHHHHhhcccCcccCcchhHHHHHHHHH-----Hhcc-Ccchhhhh
Confidence            00 11112245889999999998766654 4545442 22221  11111111122211111     1111 11222333


Q ss_pred             cCC-cCcHHHHHHHHHHHcCcEEEcCcceeEEEecC---CCcEEEEEecCceEE
Q 020312          228 LYG-LGELPQAFARLSAVYGGTYMLNKPECKVEFDE---EGKVVGVTSEGETAK  277 (328)
Q Consensus       228 ~gG-~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~---~~~v~~v~~~g~~~~  277 (328)
                      +|+ ...++..+.+.+++.|.+++.+.+|+.|..+.   +..++++...+...+
T Consensus       210 ~g~~~E~~~~p~~~yi~~~G~~v~~~~pv~~l~l~~~~~~~~~~g~~~~~~~~e  263 (485)
T COG3349         210 RGSPDEVLLQPWTEYIPERGRKVHADYPVKELDLDGARGLAKVTGGDVTGPEQE  263 (485)
T ss_pred             cCCCcceeeehhhhhccccCceeeccceeeeeeccccccccceEeeeecCcceE
Confidence            555 35688889999999999999999999999873   345777776544433

>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]

Probab=99.68  E-value=2.2e-16  Score=137.10  Aligned_cols=69  Identities=17%  Similarity=0.386  Sum_probs=57.1

Q ss_pred             CcccEEEECCChhHHHHHHhhhhCC-CeEEEeccCCCCCCcccccchHHHHhhhcCCCCCCCccCCCCCeEEecCcceEe
Q 020312            3 EEYDVIVLGTGLKECILSGLLSVDG-LKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFII   81 (328)
Q Consensus         3 ~~~dvvIvG~G~aGl~aA~~L~~~G-~~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~   81 (328)
                      .+.+|||||||+|||+||-+|.+.| .+|+|+|+++|+|||+.|+..                    .+-.+|+|++|++
T Consensus        20 ~~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIGGRI~ti~~--------------------~d~~ielGAqwih   79 (498)
T KOG0685|consen   20 GNAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIGGRIHTIPF--------------------ADGVIELGAQWIH   79 (498)
T ss_pred             CCceEEEECCchHHHHHHHHHHHhCCceEEEEEeccccCceEeeEEc--------------------CCCeEeecceeec
Confidence            3578999999999999999999666 789999999999999999965                    2348999999999


Q ss_pred             c-Cc-hHHHHHH
Q 020312           82 A-NG-ALVRVLI   91 (328)
Q Consensus        82 ~-~~-~~~~~~~   91 (328)
                      + .+ ++.++..
T Consensus        80 G~~gNpVY~la~   91 (498)
T KOG0685|consen   80 GEEGNPVYELAK   91 (498)
T ss_pred             CCCCChHHHHHH
Confidence            7 43 4444444

>PLN02976 amine oxidase

Probab=99.66  E-value=2e-15  Score=147.39  Aligned_cols=61  Identities=20%  Similarity=0.230  Sum_probs=52.6

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCcccccchHHHHhhhcCCCCCCCccCCCCCeEEecCcceEecC
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIAN   83 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~   83 (328)
                      .+||+|||||++|+++|++|.++|++|+|||+++++||++.+....                   .++.+|+|+.++...
T Consensus       693 ~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~~vGGri~t~~~~-------------------~g~pvDlGas~i~G~  753 (1713)
T PLN02976        693 RKKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRIGGRVYTDRSS-------------------LSVPVDLGASIITGV  753 (1713)
T ss_pred             CCcEEEECchHHHHHHHHHHHHCCCcEEEEeeccCCCCceeecccc-------------------CCceeccCcEEEecc
Confidence            4799999999999999999999999999999999999998876421                   346778888888753

>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO)

Probab=99.60  E-value=1.1e-15  Score=139.29  Aligned_cols=65  Identities=11%  Similarity=0.184  Sum_probs=50.7

Q ss_pred             hhHHHHHHhhhhCCCeEEEeccCCCCCCcccccchHHHHhhhcCCCCCCCccCCCCCeEEecCcceEecCch-HHHHHHh
Q 020312           14 LKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIANGA-LVRVLIH   92 (328)
Q Consensus        14 ~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~   92 (328)
                      +|||+||++|+++|++|+|||+++++||++.|.+.+                 . .++.+|.|++++..... ....+.+
T Consensus         1 iaGL~aA~~L~~~G~~v~vlEa~~r~GGr~~t~~~~-----------------~-~g~~~e~G~~~~~~~~~~~~~~~~~   62 (450)
T PF01593_consen    1 IAGLAAAYYLAKAGYDVTVLEASDRVGGRIRTFRFD-----------------N-PGFTFELGAHRFFGMYPNLLNLIDE   62 (450)
T ss_dssp             HHHHHHHHHHHHTTTEEEEEESSSSSBTTS-EEEET-----------------T-TTEEEESSS-EEETTSHHHHHHHHH
T ss_pred             ChHHHHHHHHHhCCCCEEEEEcCCCCCcceEEecCC-----------------c-cceeecCCcccccccchhhHHHHHH
Confidence            699999999999999999999999999999999763                 0 27999999999986544 3444444


Q ss_pred             cCCC
Q 020312           93 TDVT   96 (328)
Q Consensus        93 ~~~~   96 (328)
                      .+..
T Consensus        63 l~~~   66 (450)
T PF01593_consen   63 LGLE   66 (450)
T ss_dssp             HTHH
T ss_pred             hhhc
Confidence            4443

The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....

>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1

Probab=99.58  E-value=4e-15  Score=132.17  Aligned_cols=68  Identities=21%  Similarity=0.273  Sum_probs=54.8

Q ss_pred             EEeecCC---cCcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEecCceEEcCEEEECCCCCcchh
Q 020312          224 YIYPLYG---LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKV  292 (328)
Q Consensus       224 ~~~~~gG---~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~~g~~~~ad~vV~~~~~~~~~~  292 (328)
                      ++.+.+|   ...++++|.+.+++.|++|+.+++|++|..+ ++++.+|.++.+.+.||+||.+++.....+
T Consensus       136 ~~~~~~g~i~~~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~~-~~~v~gv~~~~g~i~ad~vV~a~G~~s~~l  206 (358)
T PF01266_consen  136 VFFPEGGVIDPRRLIQALAAEAQRAGVEIRTGTEVTSIDVD-GGRVTGVRTSDGEIRADRVVLAAGAWSPQL  206 (358)
T ss_dssp             EEETTEEEEEHHHHHHHHHHHHHHTT-EEEESEEEEEEEEE-TTEEEEEEETTEEEEECEEEE--GGGHHHH
T ss_pred             hcccccccccccchhhhhHHHHHHhhhhccccccccchhhc-ccccccccccccccccceeEecccccceee
Confidence            4455566   5789999999999999999999999999999 888888999555699999999888765554

1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....

>COG2081 Predicted flavoproteins [General function prediction only]

Probab=99.58  E-value=2.9e-14  Score=122.09  Aligned_cols=61  Identities=20%  Similarity=0.271  Sum_probs=48.9

Q ss_pred             EEeec-CCcCcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe-cCceEEcCEEEECCC
Q 020312          224 YIYPL-YGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPS  286 (328)
Q Consensus       224 ~~~~~-gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~-~g~~~~ad~vV~~~~  286 (328)
                      -++|. ...+.|+++|...+++.|++++++++|.+|+.+ + ....+.+ ++++++||.+|++.+
T Consensus       102 r~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~-~-~~f~l~t~~g~~i~~d~lilAtG  164 (408)
T COG2081         102 RMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKD-D-SGFRLDTSSGETVKCDSLILATG  164 (408)
T ss_pred             eecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEec-C-ceEEEEcCCCCEEEccEEEEecC
Confidence            34555 446789999999999999999999999999988 5 4455666 666899999776443

>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G

Probab=99.57  E-value=7.8e-15  Score=96.43  Aligned_cols=55  Identities=22%  Similarity=0.493  Sum_probs=48.6

Q ss_pred             EECCChhHHHHHHhhhhCCCeEEEeccCCCCCCcccccchHHHHhhhcCCCCCCCccCCCCCeEEecCcceEecC
Q 020312            9 VLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIAN   83 (328)
Q Consensus         9 IvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~   83 (328)
                      |||||++||+||++|+++|++|+|+|+++++||++.+...                    .++.+|.|++++...
T Consensus         1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~GG~~~~~~~--------------------~g~~~d~g~~~~~~~   55 (68)
T PF13450_consen    1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLGGRARSFRI--------------------PGYRFDLGAHYFFPP   55 (68)
T ss_dssp             EES-SHHHHHHHHHHHHTTSEEEEEESSSSSSGGGCEEEE--------------------TTEEEETSS-SEEET
T ss_pred             CEeeCHHHHHHHHHHHHCCCcEEEEecCcccCcceeEEEE--------------------CCEEEeeccEEEeCC
Confidence            8999999999999999999999999999999999999865                    348999999998774

...

>COG0579 Predicted dehydrogenase [General function prediction only]

Probab=99.57  E-value=3.4e-14  Score=125.38  Aligned_cols=63  Identities=22%  Similarity=0.255  Sum_probs=52.2

Q ss_pred             cCcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe-cCce-EEcCEEEECCCCCcchhhh
Q 020312          231 LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGET-AKCKKVVCDPSYLPNKVII  294 (328)
Q Consensus       231 ~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~-~g~~-~~ad~vV~~~~~~~~~~~~  294 (328)
                      ...++.++++.+.++|+++++|++|+.|+.+ ++.++.+.+ +|++ ++|+.||.+++....++.+
T Consensus       152 ~~~~t~~l~e~a~~~g~~i~ln~eV~~i~~~-~dg~~~~~~~~g~~~~~ak~Vin~AGl~Ad~la~  216 (429)
T COG0579         152 PGELTRALAEEAQANGVELRLNTEVTGIEKQ-SDGVFVLNTSNGEETLEAKFVINAAGLYADPLAQ  216 (429)
T ss_pred             HHHHHHHHHHHHHHcCCEEEecCeeeEEEEe-CCceEEEEecCCcEEEEeeEEEECCchhHHHHHH
Confidence            4678999999999999999999999999998 444566666 6666 9999999999887766644

>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases

Probab=99.57  E-value=1.6e-14  Score=128.64  Aligned_cols=62  Identities=18%  Similarity=0.224  Sum_probs=46.8

Q ss_pred             EEeecCC-cCcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe-cCceEEcCEEEECCC
Q 020312          224 YIYPLYG-LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPS  286 (328)
Q Consensus       224 ~~~~~gG-~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~-~g~~~~ad~vV~~~~  286 (328)
                      .+||.-. ..++.+.|...++++|++|+++++|++|+.+ ++.+..|.+ +++.+.||+||++++
T Consensus       100 r~fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~-~~~~f~v~~~~~~~~~a~~vILAtG  163 (409)
T PF03486_consen  100 RVFPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKK-EDGVFGVKTKNGGEYEADAVILATG  163 (409)
T ss_dssp             EEEETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEE-TTEEEEEEETTTEEEEESEEEE---
T ss_pred             EECCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeec-CCceeEeeccCcccccCCEEEEecC
Confidence            4566543 5679999999999999999999999999998 778888999 889999999887644

; PDB: 2I0Z_A 3V76_A 2GQF_A.

>PRK11728 hydroxyglutarate oxidase; Provisional

Probab=99.54  E-value=9.8e-14  Score=124.83  Aligned_cols=59  Identities=14%  Similarity=0.212  Sum_probs=48.4

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEecCceEEcCEEEECCCCCcchh
Q 020312          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKV  292 (328)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~~g~~~~ad~vV~~~~~~~~~~  292 (328)
                      ..++++|.+.+++.|++++++++|++|..+ ++.+ .|.++++++.||.||++++.++..+
T Consensus       149 ~~l~~aL~~~~~~~Gv~i~~~~~V~~i~~~-~~~~-~V~~~~g~i~ad~vV~A~G~~s~~l  207 (393)
T PRK11728        149 RAVAEAMAELIQARGGEIRLGAEVTALDEH-ANGV-VVRTTQGEYEARTLINCAGLMSDRL  207 (393)
T ss_pred             HHHHHHHHHHHHhCCCEEEcCCEEEEEEec-CCeE-EEEECCCEEEeCEEEECCCcchHHH
Confidence            678999999999999999999999999876 5554 5666555899999999888766543

>PRK00711 D-amino acid dehydrogenase small subunit; Validated

Probab=99.52  E-value=2e-13  Score=124.00  Aligned_cols=67  Identities=16%  Similarity=0.232  Sum_probs=54.0

Q ss_pred             EEeecCC---cCcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEecCceEEcCEEEECCCCCcch
Q 020312          224 YIYPLYG---LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNK  291 (328)
Q Consensus       224 ~~~~~gG---~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~~g~~~~ad~vV~~~~~~~~~  291 (328)
                      .+.|..|   ...++++|++.++++|++|+++++|++|+.+ ++.+++|++++.++.||+||++++.+..+
T Consensus       190 ~~~p~~g~~~p~~~~~~l~~~~~~~G~~i~~~~~V~~i~~~-~~~~~~v~t~~~~~~a~~VV~a~G~~~~~  259 (416)
T PRK00711        190 LRLPNDETGDCQLFTQRLAAMAEQLGVKFRFNTPVDGLLVE-GGRITGVQTGGGVITADAYVVALGSYSTA  259 (416)
T ss_pred             EECCCcccCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEec-CCEEEEEEeCCcEEeCCEEEECCCcchHH
Confidence            3455544   3468889999999999999999999999987 77777788877789999999888876543

>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase

Probab=99.51  E-value=9.1e-13  Score=115.92  Aligned_cols=95  Identities=17%  Similarity=0.212  Sum_probs=66.6

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCcccccchHHHHhhhcCCCCCCCccCCCCCeEEecCcceEecCc
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIANG   84 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~   84 (328)
                      +||+|||||++||++|++|++.|.+|+|+|+++.+||++.+....                   +....+.|++++....
T Consensus         2 ~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~iGG~~~~~~~~-------------------g~~~~~~G~h~f~t~~   62 (377)
T TIGR00031         2 FDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHIGGNCYDEVDE-------------------TILFHQYGPHIFHTNN   62 (377)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCceeeecCC-------------------CceEEeecceeEecCc
Confidence            699999999999999999999999999999999999988775321                   2233477888887665


Q ss_pred             hHHHHHHhcCCCCeeEEEeeCceeEeeCCeEEEcCCC
Q 020312           85 ALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPAT  121 (328)
Q Consensus        85 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~  121 (328)
                      ..+..+...-.. .-.+.  .......+|+.++.|-.
T Consensus        63 ~~v~~~~~~~~~-~~~~~--~~~~~~~~g~~~~~P~~   96 (377)
T TIGR00031        63 QYVWDYISPFFE-LNNYQ--HRVLALYNNLDLTLPFN   96 (377)
T ss_pred             HHHHHHHHhhcc-cccee--EEEEEEECCeEEccCCC
Confidence            544433321111 11121  12345568889888853

The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.

>PRK08274 tricarballylate dehydrogenase; Validated

Probab=99.51  E-value=3.4e-13  Score=124.07  Aligned_cols=57  Identities=26%  Similarity=0.355  Sum_probs=46.7

Q ss_pred             CCcCcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEec-----CceEEcCEEEECCC
Q 020312          229 YGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSE-----GETAKCKKVVCDPS  286 (328)
Q Consensus       229 gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~~-----g~~~~ad~vV~~~~  286 (328)
                      ++...++..|.+.+++.|++++++++|++|..+ ++++++|.+.     ...+.|+.||++.+
T Consensus       128 g~g~~l~~~l~~~~~~~gv~i~~~t~v~~l~~~-~g~v~gv~~~~~~g~~~~i~a~~VIlAtG  189 (466)
T PRK08274        128 GGGKALVNALYRSAERLGVEIRYDAPVTALELD-DGRFVGARAGSAAGGAERIRAKAVVLAAG  189 (466)
T ss_pred             CCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEec-CCeEEEEEEEccCCceEEEECCEEEECCC
Confidence            444678899999999999999999999999987 7888888752     23689999887655

>TIGR01377 soxA_mon sarcosine oxidase, monomeric form

Probab=99.51  E-value=1.9e-13  Score=122.61  Aligned_cols=58  Identities=19%  Similarity=0.150  Sum_probs=46.2

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEecCceEEcCEEEECCCCCcch
Q 020312          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNK  291 (328)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~~g~~~~ad~vV~~~~~~~~~  291 (328)
                      ..+++.|.+.++++|++++.+++|++|..+ ++.+ .|+++++++.||+||++++.+...
T Consensus       145 ~~~~~~l~~~~~~~g~~~~~~~~V~~i~~~-~~~~-~v~~~~~~i~a~~vV~aaG~~~~~  202 (380)
T TIGR01377       145 EKALRALQELAEAHGATVRDGTKVVEIEPT-ELLV-TVKTTKGSYQANKLVVTAGAWTSK  202 (380)
T ss_pred             HHHHHHHHHHHHHcCCEEECCCeEEEEEec-CCeE-EEEeCCCEEEeCEEEEecCcchHH
Confidence            468888888888999999999999999987 5554 466655689999988877765443

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase

Probab=99.50  E-value=6.9e-13  Score=121.61  Aligned_cols=63  Identities=19%  Similarity=0.173  Sum_probs=47.8

Q ss_pred             EEeecCC---cCcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEecCceEEcCEEEECCCCCc
Q 020312          224 YIYPLYG---LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLP  289 (328)
Q Consensus       224 ~~~~~gG---~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~~g~~~~ad~vV~~~~~~~  289 (328)
                      .+.+.+|   ..++++.|++.+++.|++|+.+++|++|+..   ..+.|+++++++.||+||++++.+.
T Consensus       172 ~~~~~~g~i~P~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~~---~~~~v~t~~g~v~A~~VV~Atga~s  237 (460)
T TIGR03329       172 FYSPVAASVQPGLLVRGLRRVALELGVEIHENTPMTGLEEG---QPAVVRTPDGQVTADKVVLALNAWM  237 (460)
T ss_pred             EEeCCCeEECHHHHHHHHHHHHHHcCCEEECCCeEEEEeeC---CceEEEeCCcEEECCEEEEcccccc
Confidence            3444444   3568999999999999999999999999743   3345777666899999988766543

This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.

>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form

Probab=99.46  E-value=2.6e-12  Score=116.27  Aligned_cols=59  Identities=19%  Similarity=0.136  Sum_probs=46.9

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEecCceEEcCEEEECCCCCcc
Q 020312          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPN  290 (328)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~~g~~~~ad~vV~~~~~~~~  290 (328)
                      ..++.+|++.++++|++++.+++|++|+.++++.+++|+++.+.+.|++||++++.+..
T Consensus       183 ~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~~~v~t~~g~i~a~~vVvaagg~~~  241 (407)
T TIGR01373       183 DAVAWGYARGADRRGVDIIQNCEVTGFIRRDGGRVIGVETTRGFIGAKKVGVAVAGHSS  241 (407)
T ss_pred             HHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEeCCceEECCEEEECCChhhH
Confidence            35677788889999999999999999986535677778886668999998877665443

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.

>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional

Probab=99.46  E-value=1.4e-12  Score=121.53  Aligned_cols=61  Identities=15%  Similarity=0.076  Sum_probs=50.1

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe----cC--ceEEcCEEEECCCCCcchhh
Q 020312          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS----EG--ETAKCKKVVCDPSYLPNKVI  293 (328)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~----~g--~~~~ad~vV~~~~~~~~~~~  293 (328)
                      ..++.++++.++++|++++++++|++|..+ ++++++|++    ++  .+++||.||.+++.+..++.
T Consensus       149 ~rl~~al~~~A~~~Ga~i~~~t~V~~i~~~-~~~v~gv~v~d~~~g~~~~i~A~~VVnAaG~wa~~l~  215 (546)
T PRK11101        149 FRLTAANMLDAKEHGAQILTYHEVTGLIRE-GDTVCGVRVRDHLTGETQEIHAPVVVNAAGIWGQHIA  215 (546)
T ss_pred             HHHHHHHHHHHHhCCCEEEeccEEEEEEEc-CCeEEEEEEEEcCCCcEEEEECCEEEECCChhHHHHH
Confidence            467888888899999999999999999988 788877764    23  46999999999888766553

>PRK11259 solA N-methyltryptophan oxidase; Provisional

Probab=99.45  E-value=4.4e-12  Score=113.62  Aligned_cols=57  Identities=26%  Similarity=0.289  Sum_probs=45.2

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEecCceEEcCEEEECCCCCcc
Q 020312          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPN  290 (328)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~~g~~~~ad~vV~~~~~~~~  290 (328)
                      ..++..+.+.+.+.|++++++++|++|+.+ ++. +.|+++++.+.||.||.+++.+..
T Consensus       149 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~-~~~-~~v~~~~g~~~a~~vV~A~G~~~~  205 (376)
T PRK11259        149 ELAIKAHLRLAREAGAELLFNEPVTAIEAD-GDG-VTVTTADGTYEAKKLVVSAGAWVK  205 (376)
T ss_pred             HHHHHHHHHHHHHCCCEEECCCEEEEEEee-CCe-EEEEeCCCEEEeeEEEEecCcchh
Confidence            457777888888899999999999999987 554 456675558999999987776543

>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]

Probab=99.45  E-value=5.4e-13  Score=107.92  Aligned_cols=44  Identities=18%  Similarity=0.283  Sum_probs=41.8

Q ss_pred             cEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCcccccchH
Q 020312            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLI   49 (328)
Q Consensus         6 dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~   49 (328)
                      +|+|||+||+||+||+.|.++|.+|+|+||+.-+|||..|-+.+
T Consensus         3 siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGGRlAtRRl~   46 (331)
T COG3380           3 SIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRLATRRLD   46 (331)
T ss_pred             cEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCcccchheeccC
Confidence            69999999999999999999999999999999999999998753

>PRK12409 D-amino acid dehydrogenase small subunit; Provisional

Probab=99.44  E-value=4.1e-12  Score=115.07  Aligned_cols=59  Identities=17%  Similarity=0.152  Sum_probs=45.4

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe-c----CceEEcCEEEECCCCCcch
Q 020312          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-E----GETAKCKKVVCDPSYLPNK  291 (328)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~-~----g~~~~ad~vV~~~~~~~~~  291 (328)
                      ..++..|.+.+++.|++++.+++|++|..+ ++.++.... +    +.+++||+||++++.+..+
T Consensus       197 ~~~~~~l~~~a~~~G~~i~~~~~V~~i~~~-~~~~~v~~~~~~~~~~~~i~a~~vV~a~G~~s~~  260 (410)
T PRK12409        197 HKFTTGLAAACARLGVQFRYGQEVTSIKTD-GGGVVLTVQPSAEHPSRTLEFDGVVVCAGVGSRA  260 (410)
T ss_pred             HHHHHHHHHHHHhCCCEEEcCCEEEEEEEe-CCEEEEEEEcCCCCccceEecCEEEECCCcChHH
Confidence            457788889999999999999999999987 565543222 2    2379999999888876543

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=99.41  E-value=2.6e-12  Score=122.91  Aligned_cols=63  Identities=21%  Similarity=0.170  Sum_probs=48.3

Q ss_pred             EEeecCC---cCcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe-cCceEEcCEEEECCCCCc
Q 020312          224 YIYPLYG---LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLP  289 (328)
Q Consensus       224 ~~~~~gG---~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~-~g~~~~ad~vV~~~~~~~  289 (328)
                      .+++.+|   ...++++|.+.+++ |++++++++|++|..+ ++.+. |++ ++..+.||.||.+.+...
T Consensus       397 ~~~p~~G~v~p~~l~~aL~~~a~~-Gv~i~~~~~V~~i~~~-~~~~~-v~t~~g~~~~ad~VV~A~G~~s  463 (662)
T PRK01747        397 IFYPQGGWLCPAELCRALLALAGQ-QLTIHFGHEVARLERE-DDGWQ-LDFAGGTLASAPVVVLANGHDA  463 (662)
T ss_pred             EEeCCCCeeCHHHHHHHHHHhccc-CcEEEeCCEeeEEEEe-CCEEE-EEECCCcEEECCEEEECCCCCc
Confidence            4455555   25789999988888 9999999999999987 66654 666 555678999998777643

>PTZ00383 malate:quinone oxidoreductase; Provisional

Probab=99.41  E-value=4.2e-12  Score=116.05  Aligned_cols=61  Identities=13%  Similarity=0.135  Sum_probs=50.8

Q ss_pred             CcHHHHHHHHHHH----cC--cEEEcCcceeEEEecCCCcEEEEEecCceEEcCEEEECCCCCcchhh
Q 020312          232 GELPQAFARLSAV----YG--GTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKVI  293 (328)
Q Consensus       232 ~~l~~~l~~~~~~----~G--~~i~~~~~V~~I~~~~~~~v~~v~~~g~~~~ad~vV~~~~~~~~~~~  293 (328)
                      ..++++|++.+++    +|  ++++++++|++|+.+ ++.++.|+++.+++.||.||++++.+..++.
T Consensus       211 ~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~-~~~~~~V~T~~G~i~A~~VVvaAG~~S~~La  277 (497)
T PTZ00383        211 QKLSESFVKHARRDALVPGKKISINLNTEVLNIERS-NDSLYKIHTNRGEIRARFVVVSACGYSLLFA  277 (497)
T ss_pred             HHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEec-CCCeEEEEECCCEEEeCEEEECcChhHHHHH
Confidence            5689999999988    78  789999999999987 6777778886668999999998887665543

>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]

Probab=99.39  E-value=6e-12  Score=104.98  Aligned_cols=62  Identities=19%  Similarity=0.257  Sum_probs=49.5

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCcceeEEEecC-CCcEEEEEe-cCceEEcCEEEECCCCCcchhh
Q 020312          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDE-EGKVVGVTS-EGETAKCKKVVCDPSYLPNKVI  293 (328)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~-~~~v~~v~~-~g~~~~ad~vV~~~~~~~~~~~  293 (328)
                      .+-..++...++++|+.|+.+..|+.++..+ ++..++|.| +|..+.|+.+|.+++.+-.++.
T Consensus       153 ~kslk~~~~~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t~GaWi~klL  216 (399)
T KOG2820|consen  153 AKSLKALQDKARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFTVGAWINKLL  216 (399)
T ss_pred             HHHHHHHHHHHHHcCeEEecCcceeeEeeccCCCceeEEEeccCCeeecceEEEEecHHHHhhc
Confidence            4567778888999999999999999999653 556677777 7778999999988877655443

>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]

Probab=99.37  E-value=5.6e-12  Score=104.53  Aligned_cols=120  Identities=16%  Similarity=0.273  Sum_probs=79.1

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCcccccchHHHHhhhcCCCCCCCccCCCCCeEEecCcceEecC
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIAN   83 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~   83 (328)
                      .+|++|||||++|+++|..|+++|++|+|+||++.+||+|.+...+                 ..+--...-|||.++..
T Consensus         1 ~fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIGGNaYde~d~-----------------~tGIlvHkYGpHIFHT~   63 (374)
T COG0562           1 MFDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIGGNAYDEADD-----------------QTGILVHKYGPHIFHTD   63 (374)
T ss_pred             CCcEEEECCchhHHHHHHHHHHcCCEEEEEeccccCCCccccccCC-----------------CCCeEEeeccCceeecC
Confidence            3799999999999999999999999999999999999999887542                 11333445589999988


Q ss_pred             chHHHHHHhcCCCCeeEEEe-eCceeEeeCCeEEEcCCCchhhhcCCCCChhhHHHHHHHHHH
Q 020312           84 GALVRVLIHTDVTKYLYFKA-VDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIY  145 (328)
Q Consensus        84 ~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (328)
                      +..+=.+...    +.++.. ......+.+|..+.+|-. ...+..-+...+.+..++.+...
T Consensus        64 ~~~Vwdyv~~----F~e~~~Y~hrVla~~ng~~~~lP~n-l~ti~ql~G~~~~p~~a~~~i~~  121 (374)
T COG0562          64 NKRVWDYVNQ----FTEFNPYQHRVLALVNGQLYPLPFN-LNTINQLFGKNFTPDEARKFIEE  121 (374)
T ss_pred             chHHHHHHhh----hhhhhhhccceeEEECCeeeecccc-HHHHHHHhCccCCHHHHHHHHHH
Confidence            7544333321    111111 122244568888888854 44444322223444455555543

>PRK10157 putative oxidoreductase FixC; Provisional

Probab=99.37  E-value=1.3e-11  Score=112.09  Aligned_cols=53  Identities=19%  Similarity=0.271  Sum_probs=42.7

Q ss_pred             HHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEecCceEEcCEEEECCCC
Q 020312          234 LPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSY  287 (328)
Q Consensus       234 l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~~g~~~~ad~vV~~~~~  287 (328)
                      +-+.|.+.+++.|++++.+++|++|..+ ++.++++++++++++||.||.+.+.
T Consensus       110 fD~~L~~~a~~~Gv~i~~~~~V~~i~~~-~g~v~~v~~~g~~i~A~~VI~A~G~  162 (428)
T PRK10157        110 FDAWLMEQAEEAGAQLITGIRVDNLVQR-DGKVVGVEADGDVIEAKTVILADGV  162 (428)
T ss_pred             HHHHHHHHHHHCCCEEECCCEEEEEEEe-CCEEEEEEcCCcEEECCEEEEEeCC
Confidence            3344556678889999999999999987 7777777777888999999876665

>PRK06481 fumarate reductase flavoprotein subunit; Validated

Probab=99.36  E-value=6.8e-12  Score=116.14  Aligned_cols=42  Identities=17%  Similarity=0.362  Sum_probs=39.0

Q ss_pred             CcccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCccc
Q 020312            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (328)
Q Consensus         3 ~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~   44 (328)
                      .++||||||+|++|++||+.++++|.+|+||||...+||.+.
T Consensus        60 ~~~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~~~GG~s~  101 (506)
T PRK06481         60 DKYDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPVAGGNTM  101 (506)
T ss_pred             ccCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCccc
Confidence            468999999999999999999999999999999999998653

>PRK10015 oxidoreductase; Provisional

Probab=99.36  E-value=1.2e-11  Score=112.22  Aligned_cols=53  Identities=13%  Similarity=0.145  Sum_probs=43.0

Q ss_pred             HHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEecCceEEcCEEEECCCC
Q 020312          234 LPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSY  287 (328)
Q Consensus       234 l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~~g~~~~ad~vV~~~~~  287 (328)
                      +-+.|.+.+++.|++++.+++|++|..+ +++++++.+++++++||.||.+.+.
T Consensus       110 fd~~L~~~a~~~Gv~i~~~~~V~~i~~~-~~~v~~v~~~~~~i~A~~VI~AdG~  162 (429)
T PRK10015        110 LDPWLMEQAEQAGAQFIPGVRVDALVRE-GNKVTGVQAGDDILEANVVILADGV  162 (429)
T ss_pred             HHHHHHHHHHHcCCEEECCcEEEEEEEe-CCEEEEEEeCCeEEECCEEEEccCc
Confidence            4444666778889999999999999887 7777777777778999999987665

>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364

Probab=99.36  E-value=1.2e-11  Score=110.39  Aligned_cols=52  Identities=23%  Similarity=0.160  Sum_probs=40.6

Q ss_pred             CcHHHHHHHHHHHc-CcEEEcCcceeEEEecCCCcEEEEEecCceEEcCEEEECCCCCc
Q 020312          232 GELPQAFARLSAVY-GGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLP  289 (328)
Q Consensus       232 ~~l~~~l~~~~~~~-G~~i~~~~~V~~I~~~~~~~v~~v~~~g~~~~ad~vV~~~~~~~  289 (328)
                      ..++..|++.+.+. |++++.+++|++|+.   +   .|+++++.++||+||++++...
T Consensus       145 ~~~~~~l~~~~~~~~Gv~i~~~t~V~~i~~---~---~v~t~~g~i~a~~VV~A~G~~s  197 (365)
T TIGR03364       145 REAIPALAAYLAEQHGVEFHWNTAVTSVET---G---TVRTSRGDVHADQVFVCPGADF  197 (365)
T ss_pred             HHHHHHHHHHHHhcCCCEEEeCCeEEEEec---C---eEEeCCCcEEeCEEEECCCCCh
Confidence            45778888877775 999999999999952   2   4667655789999998877653

This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.

>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]

Probab=99.35  E-value=1.9e-11  Score=109.98  Aligned_cols=64  Identities=28%  Similarity=0.305  Sum_probs=50.5

Q ss_pred             EeecCC---cCcHHHHHHHHHHHcC-cEEEcCcceeEEEecCCCcEEEEEecCceEEcCEEEECCCCCcc
Q 020312          225 IYPLYG---LGELPQAFARLSAVYG-GTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPN  290 (328)
Q Consensus       225 ~~~~gG---~~~l~~~l~~~~~~~G-~~i~~~~~V~~I~~~~~~~v~~v~~~g~~~~ad~vV~~~~~~~~  290 (328)
                      +.+..|   ...+++++++.++++| ..+..+++|+.+..+ + +.+.|.++++++.||+||++++.+..
T Consensus       146 ~~~~~~~~~p~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~-~-~~~~v~t~~g~i~a~~vv~a~G~~~~  213 (387)
T COG0665         146 FDPTGGHLDPRLLTRALAAAAEELGVVIIEGGTPVTSLERD-G-RVVGVETDGGTIEADKVVLAAGAWAG  213 (387)
T ss_pred             ecCCCCcCCHHHHHHHHHHHHHhcCCeEEEccceEEEEEec-C-cEEEEEeCCccEEeCEEEEcCchHHH
Confidence            444444   2468999999999999 567779999999987 5 78888886666999999988876544

>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional

Probab=99.35  E-value=2e-11  Score=113.07  Aligned_cols=59  Identities=17%  Similarity=0.112  Sum_probs=46.1

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe-cC----ceEEcCEEEECCCCCcchh
Q 020312          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EG----ETAKCKKVVCDPSYLPNKV  292 (328)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~-~g----~~~~ad~vV~~~~~~~~~~  292 (328)
                      ..++..++..++++|++++.+++|++|..+ ++. +.|++ ++    .++.|+.||.+++.+.+++
T Consensus       155 ~rl~~~l~~~a~~~Ga~i~~~~~V~~i~~~-~~~-~~v~~~~~~g~~~~i~a~~VVnAaG~wa~~l  218 (502)
T PRK13369        155 ARLVVLNALDAAERGATILTRTRCVSARRE-GGL-WRVETRDADGETRTVRARALVNAAGPWVTDV  218 (502)
T ss_pred             HHHHHHHHHHHHHCCCEEecCcEEEEEEEc-CCE-EEEEEEeCCCCEEEEEecEEEECCCccHHHH
Confidence            457777888889999999999999999987 554 44554 32    2589999999988876655

>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed

Probab=99.35  E-value=2.4e-11  Score=112.49  Aligned_cols=44  Identities=32%  Similarity=0.483  Sum_probs=40.2

Q ss_pred             CCCcccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCccc
Q 020312            1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (328)
Q Consensus         1 ~~~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~   44 (328)
                      |++++||+|||||++|+++|++|+++|.+|+|+|+++..+|.++
T Consensus         3 ~~~~~DVvIIGGGi~G~~~A~~la~rGl~V~LvEk~d~~~GtS~   46 (508)
T PRK12266          3 MMETYDLLVIGGGINGAGIARDAAGRGLSVLLCEQDDLASATSS   46 (508)
T ss_pred             CCCcCCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCccc
Confidence            66789999999999999999999999999999999988777553

>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase

Probab=99.32  E-value=5.1e-11  Score=109.19  Aligned_cols=63  Identities=13%  Similarity=0.113  Sum_probs=47.8

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEE-E-e-cC--ceEEcCEEEECCCCCcchhhh
Q 020312          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGV-T-S-EG--ETAKCKKVVCDPSYLPNKVII  294 (328)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v-~-~-~g--~~~~ad~vV~~~~~~~~~~~~  294 (328)
                      ..++++|++.++++|++++++++|++|+.++++.+... . + ++  .+++||+||++++.+..++.+
T Consensus       178 ~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~~~~v~v~~~~~~~g~~~~i~A~~VV~AAG~~s~~La~  245 (483)
T TIGR01320       178 GALTKQLLGYLVQNGTTIRFGHEVRNLKRQSDGSWTVTVKNTRTGGKRTLNTRFVFVGAGGGALPLLQ  245 (483)
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCeEEEEEeeccCCceEEEECCEEEECCCcchHHHHH
Confidence            67899999999999999999999999998623333322 1 2 23  369999999999887766543

This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.

>PRK05257 malate:quinone oxidoreductase; Validated

Probab=99.32  E-value=1.6e-10  Score=106.03  Aligned_cols=63  Identities=16%  Similarity=0.140  Sum_probs=47.7

Q ss_pred             CcHHHHHHHHHHHcC-cEEEcCcceeEEEecCCCcEEEEE--e-cCc--eEEcCEEEECCCCCcchhhh
Q 020312          232 GELPQAFARLSAVYG-GTYMLNKPECKVEFDEEGKVVGVT--S-EGE--TAKCKKVVCDPSYLPNKVII  294 (328)
Q Consensus       232 ~~l~~~l~~~~~~~G-~~i~~~~~V~~I~~~~~~~v~~v~--~-~g~--~~~ad~vV~~~~~~~~~~~~  294 (328)
                      ..++++|.+.+++.| ++++++++|++|+.++++.+....  + +++  +++|++||++++.+..++.+
T Consensus       183 ~~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~dg~~~v~~~~~~~G~~~~i~A~~VVvaAGg~s~~L~~  251 (494)
T PRK05257        183 GALTRQLVGYLQKQGNFELQLGHEVRDIKRNDDGSWTVTVKDLKTGEKRTVRAKFVFIGAGGGALPLLQ  251 (494)
T ss_pred             HHHHHHHHHHHHhCCCeEEEeCCEEEEEEECCCCCEEEEEEEcCCCceEEEEcCEEEECCCcchHHHHH
Confidence            578999999999887 799999999999986344333221  2 343  69999999999887766653

>TIGR00292 thiazole biosynthesis enzyme

Probab=99.31  E-value=5e-11  Score=99.86  Aligned_cols=40  Identities=38%  Similarity=0.561  Sum_probs=37.5

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCcc
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGES   43 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~   43 (328)
                      ++||+|||||++||+||++|+++|.+|+|+||+..+||.+
T Consensus        21 ~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~   60 (254)
T TIGR00292        21 ESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGS   60 (254)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCccc
Confidence            6899999999999999999999999999999999888753

This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.

>PRK07121 hypothetical protein; Validated

Probab=99.30  E-value=6.3e-11  Score=109.67  Aligned_cols=57  Identities=26%  Similarity=0.356  Sum_probs=45.6

Q ss_pred             cCcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe--cCc--eEEc-CEEEECCCC
Q 020312          231 LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS--EGE--TAKC-KKVVCDPSY  287 (328)
Q Consensus       231 ~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~--~g~--~~~a-d~vV~~~~~  287 (328)
                      ...+++.|.+.+++.|++|+++++|++|..++++++++|+.  +++  .+.| +.||++++-
T Consensus       176 g~~~~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~~~~~i~a~k~VVlAtGg  237 (492)
T PRK07121        176 GAMLMDPLAKRAAALGVQIRYDTRATRLIVDDDGRVVGVEARRYGETVAIRARKGVVLAAGG  237 (492)
T ss_pred             hHHHHHHHHHHHHhCCCEEEeCCEEEEEEECCCCCEEEEEEEeCCcEEEEEeCCEEEECCCC
Confidence            35688999999999999999999999999874568888876  333  4788 888876553

>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional

Probab=99.30  E-value=3.9e-11  Score=100.84  Aligned_cols=40  Identities=33%  Similarity=0.471  Sum_probs=37.3

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCcc
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGES   43 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~   43 (328)
                      ++||+|||||++||+||++|+++|++|+|+|++..+||.+
T Consensus        25 ~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg~   64 (257)
T PRK04176         25 EVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGM   64 (257)
T ss_pred             cCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCcc
Confidence            5899999999999999999999999999999998888743

>TIGR01813 flavo_cyto_c flavocytochrome c

Probab=99.29  E-value=8.4e-11  Score=107.46  Aligned_cols=56  Identities=25%  Similarity=0.206  Sum_probs=44.4

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe---cCc--eEEcCEEEECCCC
Q 020312          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS---EGE--TAKCKKVVCDPSY  287 (328)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~---~g~--~~~ad~vV~~~~~  287 (328)
                      ..+++.|.+.+++.|++++++++|++|..++++++++|+.   +++  .+.+|.||++++-
T Consensus       130 ~~l~~~l~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~~~a~~VVlAtGg  190 (439)
T TIGR01813       130 AEIVQKLYKKAKKEGIDTRLNSKVEDLIQDDQGTVVGVVVKGKGKGIYIKAAKAVVLATGG  190 (439)
T ss_pred             HHHHHHHHHHHHHcCCEEEeCCEeeEeEECCCCcEEEEEEEeCCCeEEEEecceEEEecCC
Confidence            4588999999999999999999999999874677887765   232  3688998876553

This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.

>PF00890 FAD_binding_2: FAD binding domain of the Pfam family

Probab=99.28  E-value=8e-11  Score=106.96  Aligned_cols=57  Identities=25%  Similarity=0.321  Sum_probs=45.2

Q ss_pred             cCcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe----cCc--eEEcCEEEECCCCC
Q 020312          231 LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS----EGE--TAKCKKVVCDPSYL  288 (328)
Q Consensus       231 ~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~----~g~--~~~ad~vV~~~~~~  288 (328)
                      ...+.+.|.+.++++|++|+++++|+++.++ +++|++|..    +++  .+.|+.||++++-.
T Consensus       140 g~~~~~~l~~~~~~~gv~i~~~~~~~~Li~e-~g~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~  202 (417)
T PF00890_consen  140 GKALIEALAKAAEEAGVDIRFNTRVTDLITE-DGRVTGVVAENPADGEFVRIKAKAVILATGGF  202 (417)
T ss_dssp             HHHHHHHHHHHHHHTTEEEEESEEEEEEEEE-TTEEEEEEEEETTTCEEEEEEESEEEE----B
T ss_pred             HHHHHHHHHHHHhhcCeeeeccceeeeEEEe-CCceeEEEEEECCCCeEEEEeeeEEEeccCcc
Confidence            3568899999999999999999999999998 889999876    244  47899988765443

; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....

>PLN02464 glycerol-3-phosphate dehydrogenase

Probab=99.28  E-value=1.5e-10  Score=109.51  Aligned_cols=62  Identities=24%  Similarity=0.269  Sum_probs=49.9

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCcceeEEEecC-CCcEEEEEe----cCc--eEEcCEEEECCCCCcchhh
Q 020312          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDE-EGKVVGVTS----EGE--TAKCKKVVCDPSYLPNKVI  293 (328)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~-~~~v~~v~~----~g~--~~~ad~vV~~~~~~~~~~~  293 (328)
                      ..++.++++.++++|++++.+++|++|..++ ++++++|+.    +++  ++.||.||.+++.+..++.
T Consensus       232 ~rl~~al~~~A~~~Ga~i~~~~~V~~l~~~~~~g~v~gV~v~d~~tg~~~~i~a~~VVnAaGaws~~l~  300 (627)
T PLN02464        232 SRLNVALACTAALAGAAVLNYAEVVSLIKDESTGRIVGARVRDNLTGKEFDVYAKVVVNAAGPFCDEVR  300 (627)
T ss_pred             HHHHHHHHHHHHhCCcEEEeccEEEEEEEecCCCcEEEEEEEECCCCcEEEEEeCEEEECCCHhHHHHH
Confidence            5688999999999999999999999998863 366777653    344  5899999999998766553

>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=99.28  E-value=3.5e-11  Score=108.69  Aligned_cols=61  Identities=23%  Similarity=0.256  Sum_probs=50.4

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe-c---Cc--eEEcCEEEECCCCCcchhhh
Q 020312          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-E---GE--TAKCKKVVCDPSYLPNKVII  294 (328)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~-~---g~--~~~ad~vV~~~~~~~~~~~~  294 (328)
                      ..++-..++.+.++|.+++..++|+++..+ ++ +++|++ +   |+  .++|+.||.+++++..++..
T Consensus       164 aRLv~~~a~~A~~~Ga~il~~~~v~~~~re-~~-v~gV~~~D~~tg~~~~ira~~VVNAaGpW~d~i~~  230 (532)
T COG0578         164 ARLVAANARDAAEHGAEILTYTRVESLRRE-GG-VWGVEVEDRETGETYEIRARAVVNAAGPWVDEILE  230 (532)
T ss_pred             HHHHHHHHHHHHhcccchhhcceeeeeeec-CC-EEEEEEEecCCCcEEEEEcCEEEECCCccHHHHHH
Confidence            457778888899999999999999999998 66 899986 2   33  48899999999998776544

>PRK06175 L-aspartate oxidase; Provisional

Probab=99.28  E-value=4.6e-11  Score=108.39  Aligned_cols=42  Identities=21%  Similarity=0.324  Sum_probs=37.7

Q ss_pred             CCCcccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCcc
Q 020312            1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGES   43 (328)
Q Consensus         1 ~~~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~   43 (328)
                      |..++||+|||+|.|||+||..+. +|.+|+||||.+..||.+
T Consensus         1 m~~~~DVvVVG~G~AGl~AA~~a~-~G~~V~lleK~~~~gg~s   42 (433)
T PRK06175          1 MNLYADVLIVGSGVAGLYSALNLR-KDLKILMVSKGKLNECNT   42 (433)
T ss_pred             CCccccEEEECchHHHHHHHHHhc-cCCCEEEEecCCCCCCch
Confidence            666899999999999999999985 799999999999888753

>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]

Probab=99.27  E-value=7.7e-11  Score=106.05  Aligned_cols=43  Identities=28%  Similarity=0.486  Sum_probs=39.9

Q ss_pred             CcccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCcccc
Q 020312            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSS   45 (328)
Q Consensus         3 ~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~s   45 (328)
                      .+|||+|||||+||++||+.|+++|.+|+|+|+.+.+|-...+
T Consensus         2 ~~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~   44 (396)
T COG0644           2 MEYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCC   44 (396)
T ss_pred             ceeeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCccc
Confidence            4799999999999999999999999999999999999886555

>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis []

Probab=99.26  E-value=6.5e-10  Score=98.68  Aligned_cols=215  Identities=13%  Similarity=0.213  Sum_probs=111.7

Q ss_pred             cccEEEECCChhHHHHHHhhhhC----CCeEEEeccCCCCCCcccccchHHHHhhhcCCCCCCCccCCCCCeEEecCcce
Q 020312            4 EYDVIVLGTGLKECILSGLLSVD----GLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKF   79 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~----G~~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~   79 (328)
                      +.++=|||||+|+|+||.+|.+.    |.+|.|||+.+.+||........                  ..+|..-.| +.
T Consensus         2 ~~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~~GGsldg~g~~------------------~~GYv~RgG-R~   62 (500)
T PF06100_consen    2 NKKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELDVPGGSLDGAGDP------------------ENGYVIRGG-RM   62 (500)
T ss_pred             CceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCCCCCCcccCCCCC------------------CCCeeecCC-cc
Confidence            45778999999999999999987    58999999999999987655321                  123333222 22


Q ss_pred             EecCchHHHHHHhcCC----------CCeeEEEeeCcee-----EeeCCeEEEcCCCchhhhcCCCCChhhHHHHHHHHH
Q 020312           80 IIANGALVRVLIHTDV----------TKYLYFKAVDGSF-----VYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFI  144 (328)
Q Consensus        80 ~~~~~~~~~~~~~~~~----------~~~l~~~~~~~~~-----~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (328)
                      +.....-.-.++.+-.          .++..++..++.+     +..+|.....         ..-++ +..++...+.+
T Consensus        63 ~~~~~eclwdLls~IPSle~p~~SVlDe~~~~n~~~p~~s~~Rli~~~G~~~~~---------~~~~~-Ls~k~r~eL~k  132 (500)
T PF06100_consen   63 MEFHYECLWDLLSSIPSLEDPGKSVLDEIYWFNKEDPNYSKARLIDKRGQIVDT---------DSKFG-LSEKDRMELIK  132 (500)
T ss_pred             ccchhHHHHHHHHhCCCCCCCCCcHHHHHHHhccCCCCCcceeeeccCCccccc---------cCcCC-CCHHHHHHHHH
Confidence            2111111112211100          0011111111111     1112221110         01122 23344444544


Q ss_pred             HHhhcccCCCcccccccCCCCCHHHHHHhcCCChhHHHHHhhhhhcccCCCCCCCchHHHHHHHHHHHHhhhcccCCCeE
Q 020312          145 YVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPY  224 (328)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~  224 (328)
                      ++-.-.+         .+...++.|++.+-.+...+..++.-..++   +.+  .++...-..+.+|...+....-.+..
T Consensus       133 L~l~~E~---------~L~~~~I~d~F~~~FF~SnFW~~W~T~FAF---qpW--hSa~E~rRyl~Rf~h~~~~l~~l~~l  198 (500)
T PF06100_consen  133 LLLTPEE---------DLGDKRIEDWFSESFFESNFWYMWSTMFAF---QPW--HSAVEFRRYLHRFIHEIPGLNDLSGL  198 (500)
T ss_pred             HhcCCHH---------HhCcccHHHhcchhhhcCchhHhHHHhhcc---Ccc--hhHHHHHHHHHHHHHhcCCCCCcccc
Confidence            4332211         236788899887665555543333222221   111  12222222333443333222112333


Q ss_pred             EeecCC-cCcHHHHHHHHHHHcCcEEEcCcceeEEEec
Q 020312          225 IYPLYG-LGELPQAFARLSAVYGGTYMLNKPECKVEFD  261 (328)
Q Consensus       225 ~~~~gG-~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~  261 (328)
                      .+.+.. ..+++.+|.+.++++||+|++|+.|+.|..+
T Consensus       199 ~~T~YNQyeSii~Pl~~~L~~~GV~F~~~t~V~di~~~  236 (500)
T PF06100_consen  199 DRTKYNQYESIILPLIRYLKSQGVDFRFNTKVTDIDFD  236 (500)
T ss_pred             ccCccccHHHHHHHHHHHHHHCCCEEECCCEEEEEEEE
Confidence            344444 4679999999999999999999999999986

>PRK13339 malate:quinone oxidoreductase; Reviewed

Probab=99.25  E-value=2.9e-10  Score=103.70  Aligned_cols=63  Identities=16%  Similarity=0.083  Sum_probs=46.3

Q ss_pred             CcHHHHHHHHHHH-cCcEEEcCcceeEEEecCCCcEEE-EE-e-cCc--eEEcCEEEECCCCCcchhhh
Q 020312          232 GELPQAFARLSAV-YGGTYMLNKPECKVEFDEEGKVVG-VT-S-EGE--TAKCKKVVCDPSYLPNKVII  294 (328)
Q Consensus       232 ~~l~~~l~~~~~~-~G~~i~~~~~V~~I~~~~~~~v~~-v~-~-~g~--~~~ad~vV~~~~~~~~~~~~  294 (328)
                      ..++++|++.+.+ .|++++++++|++|..++++.+.. ++ + +++  +++||+||++++.+..++..
T Consensus       184 ~~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~d~~w~v~v~~t~~g~~~~i~Ad~VV~AAGawS~~La~  252 (497)
T PRK13339        184 GALTRKLAKHLESHPNAQVKYNHEVVDLERLSDGGWEVTVKDRNTGEKREQVADYVFIGAGGGAIPLLQ  252 (497)
T ss_pred             HHHHHHHHHHHHhCCCcEEEeCCEEEEEEECCCCCEEEEEEecCCCceEEEEcCEEEECCCcchHHHHH
Confidence            5688999888864 489999999999998762334332 21 3 332  69999999999988776654

>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=99.24  E-value=1.1e-10  Score=108.94  Aligned_cols=42  Identities=26%  Similarity=0.472  Sum_probs=38.9

Q ss_pred             CcccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCcccc
Q 020312            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSS   45 (328)
Q Consensus         3 ~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~s   45 (328)
                      .++||||||+| +|++||..+++.|.+|+||||.+.+||.+..
T Consensus        15 ~e~DvvvvG~G-~G~~aA~~a~~~G~~v~v~Ek~~~~GG~~~~   56 (564)
T PRK12845         15 TTVDLLVVGSG-TGMAAALAAHELGLSVLIVEKSSYVGGSTAR   56 (564)
T ss_pred             ceeCEEEECCc-HHHHHHHHHHHCCCcEEEEecCCCCcCcccC
Confidence            47999999999 8999999999999999999999999997654

>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]

Probab=99.21  E-value=1.1e-10  Score=101.03  Aligned_cols=37  Identities=32%  Similarity=0.547  Sum_probs=31.1

Q ss_pred             ccEEEECCChhHHHHHHhhhhCC-CeEEEeccCCCCCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDG-LKVLHMDRNDYYGG   41 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G-~~V~vlE~~~~~GG   41 (328)
                      ||+||||||.+|+++|.+|+++| .+|+|||+......
T Consensus         1 yD~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~~~~~   38 (296)
T PF00732_consen    1 YDYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGPRYPP   38 (296)
T ss_dssp             EEEEEES-SHHHHHHHHHHTTSTTS-EEEEESSBSCTT
T ss_pred             CCEEEECcCHHHHHHHHHHhhCCCCcEEEEEccccCcc
Confidence            79999999999999999999998 69999999765443

These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....

>TIGR00275 flavoprotein, HI0933 family

Probab=99.20  E-value=1.9e-10  Score=103.48  Aligned_cols=55  Identities=16%  Similarity=0.176  Sum_probs=44.8

Q ss_pred             cCcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEecCceEEcCEEEECCCC
Q 020312          231 LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSY  287 (328)
Q Consensus       231 ~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~~g~~~~ad~vV~~~~~  287 (328)
                      ...+.+.+.+.+++.|++++++++|++|..+ ++ .+.++++++.+.||.||++++.
T Consensus       104 a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~-~~-~~~v~~~~~~i~ad~VIlAtG~  158 (400)
T TIGR00275       104 AADVLDALLNELKELGVEILTNSKVKSIKKD-DN-GFGVETSGGEYEADKVILATGG  158 (400)
T ss_pred             HHHHHHHHHHHHHHCCCEEEeCCEEEEEEec-CC-eEEEEECCcEEEcCEEEECCCC
Confidence            3568888999999999999999999999876 44 4556667778999999877654

The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.

>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated

Probab=99.20  E-value=4.3e-10  Score=101.32  Aligned_cols=55  Identities=11%  Similarity=0.039  Sum_probs=43.5

Q ss_pred             cHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe-cCceEEcCEEEECCCCCc
Q 020312          233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLP  289 (328)
Q Consensus       233 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~-~g~~~~ad~vV~~~~~~~  289 (328)
                      .+.+.|.+.+++.|++++++++|++|+.+ ++.+. +++ ++++++||.||.+.+..+
T Consensus       114 ~l~~~L~~~~~~~gv~i~~~~~v~~i~~~-~~~v~-v~~~~g~~~~a~~vV~AdG~~S  169 (392)
T PRK08773        114 LLVDRLWAALHAAGVQLHCPARVVALEQD-ADRVR-LRLDDGRRLEAALAIAADGAAS  169 (392)
T ss_pred             HHHHHHHHHHHhCCCEEEcCCeEEEEEec-CCeEE-EEECCCCEEEeCEEEEecCCCc
Confidence            46677777788889999999999999987 55544 555 677899999998776654

>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]

Probab=99.20  E-value=5.4e-11  Score=107.49  Aligned_cols=62  Identities=23%  Similarity=0.230  Sum_probs=55.5

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEecCceEEcCEEEECCCCCcchhhh
Q 020312          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKVII  294 (328)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~~g~~~~ad~vV~~~~~~~~~~~~  294 (328)
                      ..+|++|+..++.+|+.|..|++|++|... .++..+|+|.-+.++|.+||.+++++.+.+.+
T Consensus       187 ~~lC~ala~~A~~~GA~viE~cpV~~i~~~-~~~~~gVeT~~G~iet~~~VNaaGvWAr~Vg~  248 (856)
T KOG2844|consen  187 AGLCQALARAASALGALVIENCPVTGLHVE-TDKFGGVETPHGSIETECVVNAAGVWAREVGA  248 (856)
T ss_pred             HHHHHHHHHHHHhcCcEEEecCCcceEEee-cCCccceeccCcceecceEEechhHHHHHhhh
Confidence            679999999999999999999999999998 66667999988899999999999998776544

>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.19  E-value=2.5e-10  Score=107.31  Aligned_cols=55  Identities=20%  Similarity=0.189  Sum_probs=44.0

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe----cCc--eEEcCEEEECCC
Q 020312          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS----EGE--TAKCKKVVCDPS  286 (328)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~----~g~--~~~ad~vV~~~~  286 (328)
                      ..|...|.+.+++.|+++++++.++++..+++|++++|..    +++  .+.|+.||++.+
T Consensus       143 ~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATG  203 (588)
T PRK08958        143 HALLHTLYQQNLKNHTTIFSEWYALDLVKNQDGAVVGCTAICIETGEVVYFKARATVLATG  203 (588)
T ss_pred             HHHHHHHHHHhhhcCCEEEeCcEEEEEEECCCCEEEEEEEEEcCCCcEEEEEcCeEEECCC
Confidence            4588888888888899999999999999854688998874    343  478999886543

>PRK02106 choline dehydrogenase; Validated

Probab=99.18  E-value=9.4e-10  Score=103.42  Aligned_cols=36  Identities=33%  Similarity=0.628  Sum_probs=33.4

Q ss_pred             CCcccEEEECCChhHHHHHHhhhh-CCCeEEEeccCC
Q 020312            2 DEEYDVIVLGTGLKECILSGLLSV-DGLKVLHMDRND   37 (328)
Q Consensus         2 ~~~~dvvIvG~G~aGl~aA~~L~~-~G~~V~vlE~~~   37 (328)
                      ..+||+||||||.+|+.+|.+|++ +|++|+|||++.
T Consensus         3 ~~~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~   39 (560)
T PRK02106          3 TMEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGG   39 (560)
T ss_pred             CCcCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCC
Confidence            346999999999999999999999 899999999974

>PRK12834 putative FAD-binding dehydrogenase; Reviewed

Probab=99.18  E-value=6.1e-10  Score=104.32  Aligned_cols=44  Identities=34%  Similarity=0.562  Sum_probs=40.4

Q ss_pred             CCCcccEEEECCChhHHHHHHhhhhCCCeEEEeccCC--CCCCccc
Q 020312            1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND--YYGGESS   44 (328)
Q Consensus         1 ~~~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~--~~GG~~~   44 (328)
                      |-.++||+|||+|++||+||..++++|.+|+||||.+  ..||.+.
T Consensus         1 ~~~~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~~~~~GG~s~   46 (549)
T PRK12834          1 MAMDADVIVVGAGLAGLVAAAELADAGKRVLLLDQENEANLGGQAF   46 (549)
T ss_pred             CCccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCCCcee
Confidence            5678999999999999999999999999999999999  7888653

>PRK06847 hypothetical protein; Provisional

Probab=99.18  E-value=2.8e-10  Score=101.93  Aligned_cols=55  Identities=24%  Similarity=0.285  Sum_probs=43.3

Q ss_pred             cHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe-cCceEEcCEEEECCCCCc
Q 020312          233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLP  289 (328)
Q Consensus       233 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~-~g~~~~ad~vV~~~~~~~  289 (328)
                      .+.+.|.+.+++.|++++++++|++|+.+ ++.+. +++ +++++.||.||.+.+..+
T Consensus       108 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~-~~~~~-v~~~~g~~~~ad~vI~AdG~~s  163 (375)
T PRK06847        108 ALARILADAARAAGADVRLGTTVTAIEQD-DDGVT-VTFSDGTTGRYDLVVGADGLYS  163 (375)
T ss_pred             HHHHHHHHHHHHhCCEEEeCCEEEEEEEc-CCEEE-EEEcCCCEEEcCEEEECcCCCc
Confidence            46677777788889999999999999987 55543 444 788899999998777643

>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]

Probab=99.18  E-value=1.9e-11  Score=96.19  Aligned_cols=42  Identities=33%  Similarity=0.453  Sum_probs=38.7

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCcccc
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSS   45 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~s   45 (328)
                      +.||+|||||+|||+|||+|+++|.+|+|+|++..+||.++-
T Consensus        30 esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w~   71 (262)
T COG1635          30 ESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIWG   71 (262)
T ss_pred             hccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCcccc
Confidence            479999999999999999999999999999999999996543

>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=99.18  E-value=3.1e-10  Score=106.21  Aligned_cols=42  Identities=31%  Similarity=0.500  Sum_probs=38.9

Q ss_pred             CcccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCccc
Q 020312            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (328)
Q Consensus         3 ~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~   44 (328)
                      .++||+|||+|.+|++||+.|+++|.+|+|||++...||.+.
T Consensus         5 ~~~DvvIiG~G~aGl~aA~~~a~~G~~v~liEk~~~~gG~~~   46 (557)
T PRK12844          5 ETYDVVVVGSGGGGMCAALAAADSGLEPLIVEKQDKVGGSTA   46 (557)
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCceec
Confidence            479999999999999999999999999999999988888653

>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional

Probab=99.17  E-value=5.8e-10  Score=105.37  Aligned_cols=54  Identities=17%  Similarity=0.286  Sum_probs=43.5

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe----cCc--eEEcCEEEECC
Q 020312          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS----EGE--TAKCKKVVCDP  285 (328)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~----~g~--~~~ad~vV~~~  285 (328)
                      ..+...|.+.+++.|++++.++.++++..+++|++++|..    +++  .+.|+.||++.
T Consensus       166 ~~i~~~L~~~a~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLAT  225 (617)
T PTZ00139        166 HAMLHTLYGQSLKYDCNFFIEYFALDLIMDEDGECRGVIAMSMEDGSIHRFRAHYTVIAT  225 (617)
T ss_pred             HHHHHHHHHHHHhCCCEEEeceEEEEEEECCCCEEEEEEEEECCCCeEEEEECCcEEEeC
Confidence            4688899888888999999999999999843788888864    343  47899988644

>PRK06134 putative FAD-binding dehydrogenase; Reviewed

Probab=99.16  E-value=3e-09  Score=100.14  Aligned_cols=58  Identities=19%  Similarity=0.283  Sum_probs=47.4

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe--cCc--eEEc-CEEEECCCCCcc
Q 020312          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS--EGE--TAKC-KKVVCDPSYLPN  290 (328)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~--~g~--~~~a-d~vV~~~~~~~~  290 (328)
                      ..++++|.+.+++.|++|+++++|++|..+ ++++++|..  +++  .++| +.||++++-+..
T Consensus       217 ~~l~~~L~~~a~~~Gv~i~~~t~v~~l~~~-~g~v~GV~~~~~~~~~~i~a~k~VVlAtGg~~~  279 (581)
T PRK06134        217 NALVARLLKSAEDLGVRIWESAPARELLRE-DGRVAGAVVETPGGLQEIRARKGVVLAAGGFPH  279 (581)
T ss_pred             HHHHHHHHHHHHhCCCEEEcCCEEEEEEEe-CCEEEEEEEEECCcEEEEEeCCEEEEcCCCccc
Confidence            468899999999999999999999999988 788888765  344  4788 888887766543

>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.14  E-value=2.3e-10  Score=107.79  Aligned_cols=55  Identities=15%  Similarity=0.231  Sum_probs=44.1

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe----cCc--eEEcCEEEECCC
Q 020312          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS----EGE--TAKCKKVVCDPS  286 (328)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~----~g~--~~~ad~vV~~~~  286 (328)
                      ..+...|.+.+++.|+++++++.|+++..++++++++|..    +++  .+.|+.||++.+
T Consensus       149 ~~i~~~L~~~~~~~gi~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATG  209 (598)
T PRK09078        149 HAILHTLYQQSLKHNAEFFIEYFALDLIMDDGGVCRGVVAWNLDDGTLHRFRAHMVVLATG  209 (598)
T ss_pred             HHHHHHHHHHHhhcCCEEEEeEEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCC
Confidence            4588899888888999999999999999873478888864    343  578999887544

>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K

Probab=99.14  E-value=3.4e-11  Score=95.29  Aligned_cols=42  Identities=33%  Similarity=0.434  Sum_probs=35.4

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCcccc
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSS   45 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~s   45 (328)
                      ++||+|||||++||+||++|+++|++|+|+|++..+||..+.
T Consensus        17 ~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~~   58 (230)
T PF01946_consen   17 EYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMWG   58 (230)
T ss_dssp             EESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTTS
T ss_pred             cCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCccccc
Confidence            589999999999999999999999999999999999997654

>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.14  E-value=4.1e-10  Score=105.59  Aligned_cols=54  Identities=19%  Similarity=0.099  Sum_probs=44.1

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe-c---Cc--eEEcCEEEECCC
Q 020312          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-E---GE--TAKCKKVVCDPS  286 (328)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~-~---g~--~~~ad~vV~~~~  286 (328)
                      ..+.+.|.+.+++.|+++++++.++++..+ +|++++|.. +   ++  .+.|+.||++.+
T Consensus       136 ~~i~~~L~~~~~~~gv~i~~~~~~~~Li~~-~g~v~Gv~~~~~~~g~~~~i~AkaVVLATG  195 (566)
T PRK06452        136 MALLHTLFERTSGLNVDFYNEWFSLDLVTD-NKKVVGIVAMQMKTLTPFFFKTKAVVLATG  195 (566)
T ss_pred             HHHHHHHHHHHHhCCCEEEeCcEEEEEEEE-CCEEEEEEEEECCCCeEEEEEeCeEEECCC
Confidence            458888888888889999999999999998 899999875 2   22  478999887554

>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit

Probab=99.14  E-value=3.1e-10  Score=107.22  Aligned_cols=55  Identities=9%  Similarity=0.198  Sum_probs=43.6

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe----cCc--eEEcCEEEECCC
Q 020312          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS----EGE--TAKCKKVVCDPS  286 (328)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~----~g~--~~~ad~vV~~~~  286 (328)
                      ..+..+|.+.+++.|++|+.++.++++..++++++++|..    +++  .+.|+.||++.+
T Consensus       187 ~~i~~~L~~~a~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATG  247 (635)
T PLN00128        187 HAMLHTLYGQAMKHNTQFFVEYFALDLIMDSDGACQGVIALNMEDGTLHRFRAHSTILATG  247 (635)
T ss_pred             HHHHHHHHHHHHhCCCEEEEeeEEEEEEEcCCCEEEEEEEEEcCCCeEEEEEcCeEEECCC
Confidence            4588889888888899999999999998764678888864    343  478999886543

>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.13  E-value=4e-10  Score=106.09  Aligned_cols=55  Identities=16%  Similarity=0.267  Sum_probs=43.7

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe----cCc--eEEcCEEEECCC
Q 020312          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS----EGE--TAKCKKVVCDPS  286 (328)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~----~g~--~~~ad~vV~~~~  286 (328)
                      ..+.+.|.+.+.+.|++++.++.++++..++++++++|..    +++  .+.|+.||++.+
T Consensus       148 ~~l~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATG  208 (591)
T PRK07057        148 HALLHTLYQQNVAAKTQFFVEWMALDLIRDADGDVLGVTALEMETGDVYILEAKTTLFATG  208 (591)
T ss_pred             HHHHHHHHHHHHhcCCEEEeCcEEEEEEEcCCCeEEEEEEEEcCCCeEEEEECCeEEECCC
Confidence            4588889888888999999999999999864578888864    333  478999886543

>PRK07804 L-aspartate oxidase; Provisional

Probab=99.13  E-value=7.9e-10  Score=103.16  Aligned_cols=41  Identities=22%  Similarity=0.347  Sum_probs=37.4

Q ss_pred             CcccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCcc
Q 020312            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGES   43 (328)
Q Consensus         3 ~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~   43 (328)
                      .++||+|||||+|||+||..++++|.+|+|+||....||.+
T Consensus        15 ~~~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~~~g~s   55 (541)
T PRK07804         15 DAADVVVVGSGVAGLTAALAARRAGRRVLVVTKAALDDGST   55 (541)
T ss_pred             cccCEEEECccHHHHHHHHHHHHcCCeEEEEEccCCCCCch
Confidence            36899999999999999999999999999999998877743

>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup

Probab=99.13  E-value=1.6e-09  Score=102.00  Aligned_cols=54  Identities=22%  Similarity=0.284  Sum_probs=43.9

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe----cCc--eEEcCEEEECCC
Q 020312          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS----EGE--TAKCKKVVCDPS  286 (328)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~----~g~--~~~ad~vV~~~~  286 (328)
                      ..+...|.+.+++.|+++++++.|++|..+ ++++++|..    +++  .+.|+.||++.+
T Consensus       129 ~~i~~~L~~~~~~~gv~i~~~~~v~~L~~~-~g~v~Gv~~~~~~~g~~~~i~Ak~VVlAtG  188 (566)
T TIGR01812       129 HALLHTLYEQCLKLGVSFFNEYFALDLIHD-DGRVRGVVAYDLKTGEIVFFRAKAVVLATG  188 (566)
T ss_pred             HHHHHHHHHHHHHcCCEEEeccEEEEEEEe-CCEEEEEEEEECCCCcEEEEECCeEEECCC
Confidence            357888888888889999999999999988 788888764    343  589999887654

This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.

>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ

Probab=99.13  E-value=1.3e-09  Score=99.40  Aligned_cols=61  Identities=11%  Similarity=0.064  Sum_probs=48.4

Q ss_pred             eecCCcCcHHHHHHHHHHHcCcEEEcCcceeEEEecC-CCcEEEEEe--cCceEEcCEEEECCC
Q 020312          226 YPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDE-EGKVVGVTS--EGETAKCKKVVCDPS  286 (328)
Q Consensus       226 ~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~-~~~v~~v~~--~g~~~~ad~vV~~~~  286 (328)
                      ++.++...+++.|.+.+++.|++|+++++|++|..++ ++++++|..  ++..+.|+.||++++
T Consensus       117 ~~~~~g~~l~~~L~~~a~~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~~~~~~i~ak~VIlAtG  180 (432)
T TIGR02485       117 FLRGGGKALTNALYSSAERLGVEIRYGIAVDRIPPEAFDGAHDGPLTTVGTHRITTQALVLAAG  180 (432)
T ss_pred             eecCCHHHHHHHHHHHHHHcCCEEEeCCEEEEEEecCCCCeEEEEEEcCCcEEEEcCEEEEcCC
Confidence            3445556799999999999999999999999999863 467887775  335799999887655

CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).

>PRK12843 putative FAD-binding dehydrogenase; Reviewed

Probab=99.12  E-value=1.1e-09  Score=102.95  Aligned_cols=44  Identities=36%  Similarity=0.676  Sum_probs=40.0

Q ss_pred             CcccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCccccc
Q 020312            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSL   46 (328)
Q Consensus         3 ~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~s~   46 (328)
                      .++||+|||+|.+|++||+.++++|.+|+|||+.+.+||.+...
T Consensus        15 ~~~dvvvvG~G~aG~~aa~~~~~~g~~v~l~ek~~~~gg~~~~s   58 (578)
T PRK12843         15 AEFDVIVIGAGAAGMSAALFAAIAGLKVLLVERTEYVGGTTATS   58 (578)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCccccc
Confidence            36899999999999999999999999999999999999976543

>PRK07190 hypothetical protein; Provisional

Probab=99.12  E-value=1.4e-09  Score=100.20  Aligned_cols=39  Identities=26%  Similarity=0.347  Sum_probs=35.5

Q ss_pred             CCC-cccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCC
Q 020312            1 MDE-EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY   39 (328)
Q Consensus         1 ~~~-~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~   39 (328)
                      |+. .+||+|||||++||++|..|+++|.+|+|||+.+.+
T Consensus         1 m~~~~~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~~   40 (487)
T PRK07190          1 MSTQVTDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDGP   40 (487)
T ss_pred             CCCccceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCcc
Confidence            554 489999999999999999999999999999998765

>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=99.12  E-value=1.8e-09  Score=101.55  Aligned_cols=42  Identities=29%  Similarity=0.501  Sum_probs=38.7

Q ss_pred             CCcccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCcc
Q 020312            2 DEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGES   43 (328)
Q Consensus         2 ~~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~   43 (328)
                      ..++||||||+|++||+||+.++++|.+|+||||....||.+
T Consensus         9 ~~~~DVvVVG~G~AGl~AA~~aae~G~~VivlEk~~~~gG~t   50 (584)
T PRK12835          9 DREVDVLVVGSGGGGMTAALTAAARGLDTLVVEKSAHFGGST   50 (584)
T ss_pred             cCcCCEEEECccHHHHHHHHHHHHCCCcEEEEEcCCCCCchH
Confidence            357899999999999999999999999999999999888853

>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.12  E-value=9.9e-10  Score=104.16  Aligned_cols=38  Identities=32%  Similarity=0.353  Sum_probs=35.2

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCC
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG   41 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG   41 (328)
                      ++||+|||||+|||+||..++++|.+|+|+|+...+|+
T Consensus        35 ~~DVlVVG~G~AGl~AAi~Aae~G~~VilieK~~~~~~   72 (640)
T PRK07573         35 KFDVIVVGTGLAGASAAATLGELGYNVKVFCYQDSPRR   72 (640)
T ss_pred             ccCEEEECccHHHHHHHHHHHHcCCcEEEEecCCCCCc
Confidence            58999999999999999999999999999999877764

>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional

Probab=99.11  E-value=4.2e-09  Score=97.81  Aligned_cols=41  Identities=32%  Similarity=0.503  Sum_probs=37.8

Q ss_pred             CcccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCccc
Q 020312            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (328)
Q Consensus         3 ~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~   44 (328)
                      .++||||||+| +||+||+++++.|.+|+||||....||.+.
T Consensus         6 ~~~DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~~~~Gg~t~   46 (513)
T PRK12837          6 EEVDVLVAGSG-GGVAGAYTAAREGLSVALVEATDKFGGTTA   46 (513)
T ss_pred             CccCEEEECch-HHHHHHHHHHHCCCcEEEEecCCCCCccee
Confidence            47899999999 999999999999999999999998888653

>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.11  E-value=5.4e-10  Score=105.12  Aligned_cols=54  Identities=15%  Similarity=0.209  Sum_probs=44.1

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe----cCc--eEEcCEEEECCC
Q 020312          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS----EGE--TAKCKKVVCDPS  286 (328)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~----~g~--~~~ad~vV~~~~  286 (328)
                      ..+.+.|.+.+++.|+++++++.|+++..+ ++++.++..    +++  .+.|+.||++++
T Consensus       135 ~~i~~~L~~~~~~~gi~i~~~t~v~~L~~~-~g~v~Gv~~~~~~~g~~~~i~AkaVVlATG  194 (575)
T PRK05945        135 HAILHELVNNLRRYGVTIYDEWYVMRLILE-DNQAKGVVMYHIADGRLEVVRAKAVMFATG  194 (575)
T ss_pred             HHHHHHHHHHHhhCCCEEEeCcEEEEEEEE-CCEEEEEEEEEcCCCeEEEEECCEEEECCC
Confidence            468889998888899999999999999987 788887753    343  489999887554

>TIGR00551 nadB L-aspartate oxidase

Probab=99.11  E-value=1.5e-09  Score=100.19  Aligned_cols=55  Identities=18%  Similarity=0.170  Sum_probs=44.0

Q ss_pred             CcHHHHHHHHHHH-cCcEEEcCcceeEEEecCCCcEEEEEe-c-C--ceEEcCEEEECCCC
Q 020312          232 GELPQAFARLSAV-YGGTYMLNKPECKVEFDEEGKVVGVTS-E-G--ETAKCKKVVCDPSY  287 (328)
Q Consensus       232 ~~l~~~l~~~~~~-~G~~i~~~~~V~~I~~~~~~~v~~v~~-~-g--~~~~ad~vV~~~~~  287 (328)
                      ..+.+.|.+.+++ .|+++++++.|++|..+ +++++++.. + +  ..+.|+.||++.+-
T Consensus       128 ~~l~~~L~~~~~~~~gi~i~~~~~v~~l~~~-~g~v~Gv~~~~~~~~~~i~A~~VVlAtGG  187 (488)
T TIGR00551       128 REVITTLVKKALNHPNIRIIEGENALDLLIE-TGRVVGVWVWNRETVETCHADAVVLATGG  187 (488)
T ss_pred             HHHHHHHHHHHHhcCCcEEEECeEeeeeecc-CCEEEEEEEEECCcEEEEEcCEEEECCCc
Confidence            4688888888887 69999999999999987 788887766 2 2  36899998876543

L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.

>TIGR01810 betA choline dehydrogenase

Probab=99.10  E-value=3.5e-09  Score=99.00  Aligned_cols=61  Identities=15%  Similarity=0.152  Sum_probs=43.1

Q ss_pred             CcHHHHHHHHHH-HcCcEEEcCcceeEEEecCCCcEEEEEe--cCc---eEEcCEEEECCCC-Ccchhh
Q 020312          232 GELPQAFARLSA-VYGGTYMLNKPECKVEFDEEGKVVGVTS--EGE---TAKCKKVVCDPSY-LPNKVI  293 (328)
Q Consensus       232 ~~l~~~l~~~~~-~~G~~i~~~~~V~~I~~~~~~~v~~v~~--~g~---~~~ad~vV~~~~~-~~~~~~  293 (328)
                      .....++.+.+. ..|++|+.++.|++|..+ ++++++|+.  +++   .+.++.||++++. .++++.
T Consensus       193 ~s~~~~~l~~a~~r~nl~i~~~~~V~rI~~~-~~ra~GV~~~~~~~~~~~~~ak~VIlaAGai~SP~LL  260 (532)
T TIGR01810       193 VSAARAYLHPAMKRPNLEVQTRAFVTKINFE-GNRATGVEFKKGGRKEHTEANKEVILSAGAINSPQLL  260 (532)
T ss_pred             EcHHHHHhhhhccCCCeEEEeCCEEEEEEec-CCeEEEEEEEeCCcEEEEEEeeeEEEccCCCCCHHHH
Confidence            344555555554 457999999999999998 888999986  332   2578888877765 455543

This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.

>TIGR02032 GG-red-SF geranylgeranyl reductase family

Probab=99.10  E-value=1.2e-09  Score=94.34  Aligned_cols=37  Identities=30%  Similarity=0.495  Sum_probs=34.6

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG   41 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG   41 (328)
                      |||+|||||++||++|+.|+++|.+|+|+|+++.++.
T Consensus         1 ~dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~~~   37 (295)
T TIGR02032         1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRY   37 (295)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCc
Confidence            6999999999999999999999999999999887654

This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.

>PRK08163 salicylate hydroxylase; Provisional

Probab=99.10  E-value=9.5e-10  Score=99.26  Aligned_cols=39  Identities=21%  Similarity=0.310  Sum_probs=36.2

Q ss_pred             CCCcccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCC
Q 020312            1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY   39 (328)
Q Consensus         1 ~~~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~   39 (328)
                      |..+.||+|||||++||++|..|+++|++|+|+|+++.+
T Consensus         1 ~~~~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~~   39 (396)
T PRK08163          1 MTKVTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEI   39 (396)
T ss_pred             CCCCCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCccc
Confidence            677899999999999999999999999999999997654

>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.10  E-value=7.3e-10  Score=104.35  Aligned_cols=43  Identities=23%  Similarity=0.362  Sum_probs=37.9

Q ss_pred             CCC-cccEEEECCChhHHHHHHhhhhCC---CeEEEeccCCCCCCcc
Q 020312            1 MDE-EYDVIVLGTGLKECILSGLLSVDG---LKVLHMDRNDYYGGES   43 (328)
Q Consensus         1 ~~~-~~dvvIvG~G~aGl~aA~~L~~~G---~~V~vlE~~~~~GG~~   43 (328)
                      |+. ++||+|||||+|||+||..++++|   .+|+|+||....||.+
T Consensus         1 ~~~~~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~~~~~~~s   47 (577)
T PRK06069          1 MEVLKYDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQPMRSHS   47 (577)
T ss_pred             CCceecCEEEECccHHHHHHHHHHHHhCCCCCcEEEEEcccCCCCCc
Confidence            443 589999999999999999999998   8999999998877754

>PRK12842 putative succinate dehydrogenase; Reviewed

Probab=99.09  E-value=4.9e-09  Score=98.75  Aligned_cols=42  Identities=24%  Similarity=0.409  Sum_probs=39.2

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCcccc
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSS   45 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~s   45 (328)
                      ++||||||||++||+||+.++++|.+|+|+||....||.+..
T Consensus         9 ~~DVvVVG~G~aGl~AA~~aa~~G~~v~llEk~~~~gG~~~~   50 (574)
T PRK12842          9 TCDVLVIGSGAGGLSAAITARKLGLDVVVLEKEPVFGGTTAF   50 (574)
T ss_pred             CCCEEEECcCHHHHHHHHHHHHcCCeEEEEecCCCCCCccce
Confidence            689999999999999999999999999999999999987643

>PLN02661 Putative thiazole synthesis

Probab=99.09  E-value=2.5e-09  Score=92.32  Aligned_cols=39  Identities=26%  Similarity=0.353  Sum_probs=36.1

Q ss_pred             cccEEEECCChhHHHHHHhhhhC-CCeEEEeccCCCCCCc
Q 020312            4 EYDVIVLGTGLKECILSGLLSVD-GLKVLHMDRNDYYGGE   42 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~-G~~V~vlE~~~~~GG~   42 (328)
                      ++||+|||||++|++||++|+++ |.+|+|+|++..+||.
T Consensus        92 ~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GGG  131 (357)
T PLN02661         92 DTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGGG  131 (357)
T ss_pred             cCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcccccc
Confidence            58999999999999999999976 8999999999888874

>PRK06185 hypothetical protein; Provisional

Probab=99.09  E-value=2.8e-09  Score=96.58  Aligned_cols=37  Identities=24%  Similarity=0.357  Sum_probs=34.1

Q ss_pred             CCcccEEEECCChhHHHHHHhhhhCCCeEEEeccCCC
Q 020312            2 DEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (328)
Q Consensus         2 ~~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~   38 (328)
                      +.++||+|||||++|+++|+.|+++|++|+|+|+++.
T Consensus         4 ~~~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~   40 (407)
T PRK06185          4 VETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHAD   40 (407)
T ss_pred             cccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence            3579999999999999999999999999999999753

>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family

Probab=99.09  E-value=2e-09  Score=96.79  Aligned_cols=55  Identities=16%  Similarity=0.101  Sum_probs=43.5

Q ss_pred             CcHHHHHHHHHHHcC-cEEEcCcceeEEEecCCCcEEEEEe-cCceEEcCEEEECCCCC
Q 020312          232 GELPQAFARLSAVYG-GTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYL  288 (328)
Q Consensus       232 ~~l~~~l~~~~~~~G-~~i~~~~~V~~I~~~~~~~v~~v~~-~g~~~~ad~vV~~~~~~  288 (328)
                      ..+.+.|.+.+.+.| ++++++++|++|+.+ ++.+. ++. ++++++||.||.+.+..
T Consensus       106 ~~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~-~~~~~-v~~~~g~~~~~~~vi~adG~~  162 (385)
T TIGR01988       106 RVLQQALWERLQEYPNVTLLCPARVVELPRH-SDHVE-LTLDDGQQLRARLLVGADGAN  162 (385)
T ss_pred             HHHHHHHHHHHHhCCCcEEecCCeEEEEEec-CCeeE-EEECCCCEEEeeEEEEeCCCC
Confidence            457788888888888 999999999999987 56543 555 77789999988765543

This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki

>PRK12839 hypothetical protein; Provisional

Probab=99.09  E-value=7.5e-09  Score=97.03  Aligned_cols=43  Identities=28%  Similarity=0.454  Sum_probs=39.8

Q ss_pred             CcccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCcccc
Q 020312            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSS   45 (328)
Q Consensus         3 ~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~s   45 (328)
                      .++||+|||+|.+|++||+.|+++|.+|+|||+...+||.+..
T Consensus         7 ~~~dv~ViG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg~~~~   49 (572)
T PRK12839          7 HTYDVVVVGSGAGGLSAAVAAAYGGAKVLVVEKASTCGGATAW   49 (572)
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCccccc
Confidence            4699999999999999999999999999999999999997654

>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.08  E-value=2.9e-09  Score=100.90  Aligned_cols=39  Identities=23%  Similarity=0.267  Sum_probs=35.9

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCc
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGE   42 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~   42 (328)
                      ++||+|||||+|||+||..++++|.+|+|+||....||.
T Consensus         8 ~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~~~~g~   46 (626)
T PRK07803          8 SYDVVVIGAGGAGLRAAIEARERGLRVAVVCKSLFGKAH   46 (626)
T ss_pred             eecEEEECcCHHHHHHHHHHHHCCCCEEEEeccCCCCCc
Confidence            589999999999999999999999999999999876654

>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.08  E-value=6.1e-10  Score=104.86  Aligned_cols=55  Identities=18%  Similarity=0.147  Sum_probs=43.7

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCcceeEEEecCC---CcEEEEEe----cCc--eEEcCEEEECCC
Q 020312          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEE---GKVVGVTS----EGE--TAKCKKVVCDPS  286 (328)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~---~~v~~v~~----~g~--~~~ad~vV~~~~  286 (328)
                      ..+.+.|.+.+++.|+++++++.|++|..+++   ++++++..    +++  .+.|+.||++++
T Consensus       140 ~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATG  203 (583)
T PRK08205        140 HMILQTLYQNCVKHGVEFFNEFYVLDLLLTETPSGPVAAGVVAYELATGEIHVFHAKAVVFATG  203 (583)
T ss_pred             HHHHHHHHHHHHhcCCEEEeCCEEEEEEecCCccCCcEEEEEEEEcCCCeEEEEEeCeEEECCC
Confidence            46888898888889999999999999998722   78888864    343  478999887554

>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.07  E-value=4.7e-09  Score=98.88  Aligned_cols=41  Identities=22%  Similarity=0.164  Sum_probs=37.3

Q ss_pred             CcccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCcc
Q 020312            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGES   43 (328)
Q Consensus         3 ~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~   43 (328)
                      +++||+|||||+|||+||..++++|.+|+|+||....||.+
T Consensus         2 ~~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~~~~~g~s   42 (589)
T PRK08641          2 AKGKVIVVGGGLAGLMATIKAAEAGVHVDLFSLVPVKRSHS   42 (589)
T ss_pred             CCccEEEECchHHHHHHHHHHHHcCCcEEEEEccCCCCCcc
Confidence            46799999999999999999999999999999998876643

>PRK07395 L-aspartate oxidase; Provisional

Probab=99.07  E-value=1.8e-09  Score=100.69  Aligned_cols=55  Identities=7%  Similarity=0.119  Sum_probs=42.6

Q ss_pred             CcHHHHHHHHHHHc-CcEEEcCcceeEEEecC-CCcEEEEEe--cCc--eEEcCEEEECCC
Q 020312          232 GELPQAFARLSAVY-GGTYMLNKPECKVEFDE-EGKVVGVTS--EGE--TAKCKKVVCDPS  286 (328)
Q Consensus       232 ~~l~~~l~~~~~~~-G~~i~~~~~V~~I~~~~-~~~v~~v~~--~g~--~~~ad~vV~~~~  286 (328)
                      ..+.++|.+.+++. |+++++++.|+++..++ ++++++|..  +++  .+.|+.||++++
T Consensus       134 ~~i~~~L~~~~~~~~gi~i~~~~~v~~Li~~~~~g~v~Gv~~~~~g~~~~i~AkaVILATG  194 (553)
T PRK07395        134 RAIVTTLTEQVLQRPNIEIISQALALSLWLEPETGRCQGISLLYQGQITWLRAGAVILATG  194 (553)
T ss_pred             HHHHHHHHHHHhhcCCcEEEECcChhhheecCCCCEEEEEEEEECCeEEEEEcCEEEEcCC
Confidence            46888888877654 99999999999999873 378888875  444  378999886543

>PRK06184 hypothetical protein; Provisional

Probab=99.06  E-value=1.1e-09  Score=101.70  Aligned_cols=38  Identities=18%  Similarity=0.228  Sum_probs=34.9

Q ss_pred             CCcccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCC
Q 020312            2 DEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY   39 (328)
Q Consensus         2 ~~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~   39 (328)
                      ++++||+|||||++||++|..|+++|++|+|+|+.+.+
T Consensus         1 ~~~~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~   38 (502)
T PRK06184          1 YTTTDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEP   38 (502)
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence            34799999999999999999999999999999998754

>PRK08401 L-aspartate oxidase; Provisional

Probab=99.06  E-value=5.6e-09  Score=95.91  Aligned_cols=54  Identities=17%  Similarity=0.209  Sum_probs=45.2

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEecCceEEcCEEEECCCC
Q 020312          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSY  287 (328)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~~g~~~~ad~vV~~~~~  287 (328)
                      ..+.+.|.+.+++.|++++.+ .++++..+ +++++++.++++.+.||.||++++-
T Consensus       120 ~~i~~~L~~~~~~~gv~i~~~-~v~~l~~~-~g~v~Gv~~~g~~i~a~~VVLATGG  173 (466)
T PRK08401        120 KHIIKILYKHARELGVNFIRG-FAEELAIK-NGKAYGVFLDGELLKFDATVIATGG  173 (466)
T ss_pred             HHHHHHHHHHHHhcCCEEEEe-EeEEEEee-CCEEEEEEECCEEEEeCeEEECCCc
Confidence            468899999999999999876 89999877 7888888887778999998876554

>PRK09126 hypothetical protein; Provisional

Probab=99.05  E-value=2.9e-09  Score=95.95  Aligned_cols=38  Identities=29%  Similarity=0.413  Sum_probs=35.3

Q ss_pred             CCCcccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCC
Q 020312            1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY   39 (328)
Q Consensus         1 ~~~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~   39 (328)
                      |+ ++||+|||||++|+++|..|+++|++|+|+|+.+.+
T Consensus         1 ~~-~~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~   38 (392)
T PRK09126          1 MM-HSDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPLA   38 (392)
T ss_pred             CC-cccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCcc
Confidence            55 799999999999999999999999999999998764

>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=99.05  E-value=2.3e-09  Score=96.99  Aligned_cols=56  Identities=16%  Similarity=0.130  Sum_probs=44.9

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe-cCceEEcCEEEECCCCCc
Q 020312          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLP  289 (328)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~-~g~~~~ad~vV~~~~~~~  289 (328)
                      ..+.+.|.+.+++.|++++++++|++|+.+ ++.+. +++ +++++.||.||.+.+..+
T Consensus       111 ~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~-~~~v~-v~~~~g~~~~ad~vI~AdG~~S  167 (403)
T PRK07333        111 RVLINALRKRAEALGIDLREATSVTDFETR-DEGVT-VTLSDGSVLEARLLVAADGARS  167 (403)
T ss_pred             HHHHHHHHHHHHhCCCEEEcCCEEEEEEEc-CCEEE-EEECCCCEEEeCEEEEcCCCCh
Confidence            467888888888889999999999999987 55543 454 777899999998776643

>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=99.05  E-value=2.3e-09  Score=97.03  Aligned_cols=55  Identities=11%  Similarity=0.003  Sum_probs=42.0

Q ss_pred             cHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe-cCceEEcCEEEECCCCCc
Q 020312          233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLP  289 (328)
Q Consensus       233 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~-~g~~~~ad~vV~~~~~~~  289 (328)
                      .+.+.|.+.+++.|++++++++|++|+.+ ++.+. |+. ++++++||.||.+.+..+
T Consensus       113 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~-~~~v~-v~~~~g~~~~a~~vVgAdG~~S  168 (405)
T PRK05714        113 VVQDALLERLHDSDIGLLANARLEQMRRS-GDDWL-LTLADGRQLRAPLVVAADGANS  168 (405)
T ss_pred             HHHHHHHHHHhcCCCEEEcCCEEEEEEEc-CCeEE-EEECCCCEEEeCEEEEecCCCc
Confidence            45566667777789999999999999987 55543 454 777899999997766543

>PRK07045 putative monooxygenase; Reviewed

Probab=99.04  E-value=2.8e-09  Score=95.91  Aligned_cols=39  Identities=28%  Similarity=0.451  Sum_probs=35.4

Q ss_pred             CC-CcccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCC
Q 020312            1 MD-EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY   39 (328)
Q Consensus         1 ~~-~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~   39 (328)
                      |. .++||+|||||++||++|..|+++|++|+|+|+.+.+
T Consensus         1 ~~~~~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~   40 (388)
T PRK07045          1 MKNNPVDVLINGSGIAGVALAHLLGARGHSVTVVERAARN   40 (388)
T ss_pred             CCCceeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcc
Confidence            44 5689999999999999999999999999999998754

>PRK08071 L-aspartate oxidase; Provisional

Probab=99.04  E-value=3.2e-09  Score=98.45  Aligned_cols=40  Identities=20%  Similarity=0.348  Sum_probs=36.3

Q ss_pred             CcccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCcc
Q 020312            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGES   43 (328)
Q Consensus         3 ~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~   43 (328)
                      .++||+|||+|+|||+||..+++ |.+|+|+||....||.+
T Consensus         2 ~~~DVlVVG~G~AGl~AAl~a~~-g~~V~lveK~~~~~g~s   41 (510)
T PRK08071          2 PSADVIIIGSGIAALTVAKELCH-EYNVIIITKKTKRNSNS   41 (510)
T ss_pred             CccCEEEECccHHHHHHHHHhhc-CCCEEEEeccCCCCCCc
Confidence            37899999999999999999987 99999999999877754

>PRK08275 putative oxidoreductase; Provisional

Probab=99.04  E-value=4.1e-09  Score=98.84  Aligned_cols=55  Identities=16%  Similarity=0.163  Sum_probs=43.2

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe----cCc--eEEcCEEEECCC
Q 020312          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS----EGE--TAKCKKVVCDPS  286 (328)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~----~g~--~~~ad~vV~~~~  286 (328)
                      ..+.+.|.+.+++.|+++++++.|++|..++++++.+|..    +++  .+.|+.||++++
T Consensus       137 ~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATG  197 (554)
T PRK08275        137 HDIKKVLYRQLKRARVLITNRIMATRLLTDADGRVAGALGFDCRTGEFLVIRAKAVILCCG  197 (554)
T ss_pred             HHHHHHHHHHHHHCCCEEEcceEEEEEEEcCCCeEEEEEEEecCCCcEEEEECCEEEECCC
Confidence            4578888888888999999999999999863567887763    343  478999886544

>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional

Probab=99.03  E-value=4.3e-09  Score=94.75  Aligned_cols=37  Identities=30%  Similarity=0.412  Sum_probs=34.5

Q ss_pred             CcccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCC
Q 020312            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY   39 (328)
Q Consensus         3 ~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~   39 (328)
                      .++||+|||||++||++|+.|++.|.+|+|+|+++.+
T Consensus         4 ~~~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~   40 (388)
T PRK07608          4 MKFDVVVVGGGLVGASLALALAQSGLRVALLAPRAPP   40 (388)
T ss_pred             ccCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCc
Confidence            4689999999999999999999999999999998764

>PRK06854 adenylylsulfate reductase subunit alpha; Validated

Probab=99.03  E-value=3.7e-09  Score=99.87  Aligned_cols=54  Identities=13%  Similarity=0.121  Sum_probs=42.1

Q ss_pred             CcHHHHHHHHHHHcC-cEEEcCcceeEEEecCCCcEEEEEe----cCc--eEEcCEEEECCC
Q 020312          232 GELPQAFARLSAVYG-GTYMLNKPECKVEFDEEGKVVGVTS----EGE--TAKCKKVVCDPS  286 (328)
Q Consensus       232 ~~l~~~l~~~~~~~G-~~i~~~~~V~~I~~~~~~~v~~v~~----~g~--~~~ad~vV~~~~  286 (328)
                      ..+.+.|.+.+++.| ++++.++.|++|..+ ++++++|..    +++  .+.|+.||++++
T Consensus       132 ~~~~~~L~~~a~~~ggV~i~~~~~v~~Li~~-~g~v~Gv~~~~~~~g~~~~i~AkaVILATG  192 (608)
T PRK06854        132 ESYKPIVAEAAKKALGDNVLNRVFITDLLVD-DNRIAGAVGFSVRENKFYVFKAKAVIVATG  192 (608)
T ss_pred             HHHHHHHHHHHHhcCCCEEEeCCEEEEEEEe-CCEEEEEEEEEccCCcEEEEECCEEEECCC
Confidence            457777877787776 999999999999987 778887742    343  589999887655

>PRK06834 hypothetical protein; Provisional

Probab=99.03  E-value=4.9e-09  Score=96.68  Aligned_cols=54  Identities=15%  Similarity=0.101  Sum_probs=41.1

Q ss_pred             HHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe-cCceEEcCEEEECCCCCc
Q 020312          234 LPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLP  289 (328)
Q Consensus       234 l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~-~g~~~~ad~vV~~~~~~~  289 (328)
                      +-+.|.+.+++.|++++++++|++|+++ ++.+. ++. ++++++||+||.|.+..+
T Consensus       102 le~~L~~~l~~~gv~i~~~~~v~~v~~~-~~~v~-v~~~~g~~i~a~~vVgADG~~S  156 (488)
T PRK06834        102 IERILAEWVGELGVPIYRGREVTGFAQD-DTGVD-VELSDGRTLRAQYLVGCDGGRS  156 (488)
T ss_pred             HHHHHHHHHHhCCCEEEcCCEEEEEEEc-CCeEE-EEECCCCEEEeCEEEEecCCCC
Confidence            4555666777889999999999999988 55543 444 667899999997765543

>PRK07512 L-aspartate oxidase; Provisional

Probab=99.02  E-value=2.9e-09  Score=98.77  Aligned_cols=54  Identities=19%  Similarity=0.226  Sum_probs=43.2

Q ss_pred             CcHHHHHHHHHHHc-CcEEEcCcceeEEEecCCCcEEEEEe--cCc--eEEcCEEEECCC
Q 020312          232 GELPQAFARLSAVY-GGTYMLNKPECKVEFDEEGKVVGVTS--EGE--TAKCKKVVCDPS  286 (328)
Q Consensus       232 ~~l~~~l~~~~~~~-G~~i~~~~~V~~I~~~~~~~v~~v~~--~g~--~~~ad~vV~~~~  286 (328)
                      ..+.++|.+.+++. |++++.+++|++|..+ +++++++..  +++  .+.|+.||++++
T Consensus       136 ~~l~~~L~~~~~~~~gV~i~~~~~v~~Li~~-~g~v~Gv~~~~~~~~~~i~Ak~VVLATG  194 (513)
T PRK07512        136 AAIMRALIAAVRATPSITVLEGAEARRLLVD-DGAVAGVLAATAGGPVVLPARAVVLATG  194 (513)
T ss_pred             HHHHHHHHHHHHhCCCCEEEECcChhheeec-CCEEEEEEEEeCCeEEEEECCEEEEcCC
Confidence            46888898888775 8999999999999887 788888876  333  589999886543

>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]

Probab=99.01  E-value=6.6e-09  Score=93.36  Aligned_cols=55  Identities=22%  Similarity=0.141  Sum_probs=42.8

Q ss_pred             CcHHHHHHHHHHHcC-cEEEcCcceeEEEecCCCcEEEEEe-cCceEEcCEEEECCCC
Q 020312          232 GELPQAFARLSAVYG-GTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSY  287 (328)
Q Consensus       232 ~~l~~~l~~~~~~~G-~~i~~~~~V~~I~~~~~~~v~~v~~-~g~~~~ad~vV~~~~~  287 (328)
                      ..+-+.|.+.+.+.+ ++++++++|+.++.+ ++.+..... +|++++||.||.+=+.
T Consensus       104 ~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~-~~~v~v~l~~dG~~~~a~llVgADG~  160 (387)
T COG0654         104 SDLLNALLEAARALPNVTLRFGAEVEAVEQD-GDGVTVTLSFDGETLDADLLVGADGA  160 (387)
T ss_pred             HHHHHHHHHHHhhCCCcEEEcCceEEEEEEc-CCceEEEEcCCCcEEecCEEEECCCC
Confidence            356677777787776 899999999999998 666664444 7888999999966543

>PLN02815 L-aspartate oxidase

Probab=99.00  E-value=2.8e-09  Score=100.01  Aligned_cols=39  Identities=15%  Similarity=0.294  Sum_probs=36.1

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCcc
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGES   43 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~   43 (328)
                      ++||+|||+|++||+||+.+++.| +|+|+||....||.+
T Consensus        29 ~~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~~~~gg~s   67 (594)
T PLN02815         29 YFDFLVIGSGIAGLRYALEVAEYG-TVAIITKDEPHESNT   67 (594)
T ss_pred             ccCEEEECccHHHHHHHHHHhhCC-CEEEEECCCCCCCcH
Confidence            589999999999999999999999 999999999888753

>PTZ00306 NADH-dependent fumarate reductase; Provisional

Probab=99.00  E-value=2.9e-09  Score=107.39  Aligned_cols=41  Identities=29%  Similarity=0.471  Sum_probs=38.5

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCccc
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~   44 (328)
                      ++||||||+|.+||+||..+++.|.+|+||||....||.+.
T Consensus       409 ~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~~GG~s~  449 (1167)
T PTZ00306        409 PARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKLGGNSA  449 (1167)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCCCCCchh
Confidence            58999999999999999999999999999999999999654

>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase

Probab=99.00  E-value=6.9e-09  Score=93.19  Aligned_cols=55  Identities=16%  Similarity=0.094  Sum_probs=43.2

Q ss_pred             CcHHHHHHHHHHHc-CcEEEcCcceeEEEecCCCcEEEEEe-cCceEEcCEEEECCCCC
Q 020312          232 GELPQAFARLSAVY-GGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYL  288 (328)
Q Consensus       232 ~~l~~~l~~~~~~~-G~~i~~~~~V~~I~~~~~~~v~~v~~-~g~~~~ad~vV~~~~~~  288 (328)
                      ..+.+.|.+.+.+. |++++++++|++|+.+ ++.++ |.. ++++++||.||.+.+..
T Consensus       105 ~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~-~~~~~-v~~~~g~~~~ad~vV~AdG~~  161 (382)
T TIGR01984       105 ADLGQALLSRLALLTNIQLYCPARYKEIIRN-QDYVR-VTLDNGQQLRAKLLIAADGAN  161 (382)
T ss_pred             HHHHHHHHHHHHhCCCcEEEcCCeEEEEEEc-CCeEE-EEECCCCEEEeeEEEEecCCC
Confidence            45788888888874 9999999999999987 55543 444 67789999999776653

This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.

>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated

Probab=98.99  E-value=9.8e-09  Score=94.97  Aligned_cols=42  Identities=40%  Similarity=0.529  Sum_probs=37.4

Q ss_pred             CCCcccEEEECCChhHHHHHHhhhhCCCeEEEeccC-CCCCCc
Q 020312            1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRN-DYYGGE   42 (328)
Q Consensus         1 ~~~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~-~~~GG~   42 (328)
                      |+.+|||+|||||+||+.||+.+++.|.+|+|+|++ +.+|+.
T Consensus         1 ~~~~yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG~m   43 (618)
T PRK05192          1 MPEEYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQM   43 (618)
T ss_pred             CCccceEEEECchHHHHHHHHHHHHcCCcEEEEeccccccccc
Confidence            566899999999999999999999999999999997 466653

>PRK08626 fumarate reductase flavoprotein subunit; Provisional

Probab=98.98  E-value=6.8e-09  Score=98.72  Aligned_cols=54  Identities=15%  Similarity=0.090  Sum_probs=43.2

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe----cCc--eEEcCEEEECCC
Q 020312          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS----EGE--TAKCKKVVCDPS  286 (328)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~----~g~--~~~ad~vV~~~~  286 (328)
                      ..+...|.+.+++.|++++.+++|++|..+ +++++++..    +++  .+.|+.||++++
T Consensus       158 ~~l~~~L~~~~~~~gv~i~~~~~~~~Li~~-~g~v~Gv~~~~~~~G~~~~i~AkaVVLATG  217 (657)
T PRK08626        158 HTMLYAVDNEAIKLGVPVHDRKEAIALIHD-GKRCYGAVVRCLITGELRAYVAKATLIATG  217 (657)
T ss_pred             HHHHHHHHHHHHhCCCEEEeeEEEEEEEEE-CCEEEEEEEEEcCCCcEEEEEcCeEEECCC
Confidence            457778888888899999999999999988 788888764    343  367999886554

>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.98  E-value=2.1e-09  Score=100.62  Aligned_cols=55  Identities=16%  Similarity=0.130  Sum_probs=42.3

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe----cCc--eEEcCEEEECCC
Q 020312          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS----EGE--TAKCKKVVCDPS  286 (328)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~----~g~--~~~ad~vV~~~~  286 (328)
                      ..+...|.+.+++.|+++++++.|+++..+++++++++..    +++  .+.|+.||++++
T Consensus       134 ~~i~~~L~~~~~~~gv~i~~~t~v~~Li~~~~~~v~Gv~~~~~~~g~~~~i~AkaVIlATG  194 (543)
T PRK06263        134 HEMMMGLMEYLIKERIKILEEVMAIKLIVDENREVIGAIFLDLRNGEIFPIYAKATILATG  194 (543)
T ss_pred             HHHHHHHHHHHhcCCCEEEeCeEeeeeEEeCCcEEEEEEEEECCCCcEEEEEcCcEEECCC
Confidence            4578888888888899999999999999873334888753    343  488999886544

>PRK08244 hypothetical protein; Provisional

Probab=98.97  E-value=1.3e-08  Score=94.54  Aligned_cols=35  Identities=29%  Similarity=0.528  Sum_probs=32.9

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEeccCCC
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~   38 (328)
                      ++||+|||||++||++|..|+++|++|+|+||.+.
T Consensus         2 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~   36 (493)
T PRK08244          2 KYEVIIIGGGPVGLMLASELALAGVKTCVIERLKE   36 (493)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence            48999999999999999999999999999999754

>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated

Probab=98.94  E-value=2.5e-08  Score=89.85  Aligned_cols=35  Identities=23%  Similarity=0.478  Sum_probs=33.1

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEeccCCC
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~   38 (328)
                      ++||+|||||++||++|..|+++|++|+|+|+++.
T Consensus         2 ~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~   36 (392)
T PRK08243          2 RTQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSR   36 (392)
T ss_pred             cceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCc
Confidence            57999999999999999999999999999999774

>TIGR02462 pyranose_ox pyranose oxidase

Probab=98.92  E-value=9.4e-08  Score=88.15  Aligned_cols=37  Identities=30%  Similarity=0.402  Sum_probs=35.3

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG   41 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG   41 (328)
                      |||+|||+|++|+++|++|+++|++|+|+|++...||
T Consensus         1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~~~~   37 (544)
T TIGR02462         1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAADSF   37 (544)
T ss_pred             CcEEEECCchHHHHHHHHHHHCCCeEEEEeccCccCC
Confidence            6999999999999999999999999999999988875

Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.

>PRK07588 hypothetical protein; Provisional

Probab=98.91  E-value=1.9e-08  Score=90.68  Aligned_cols=34  Identities=21%  Similarity=0.218  Sum_probs=31.6

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~   38 (328)
                      .||+|||||++||++|..|+++|++|+|+|+.+.
T Consensus         1 ~~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~   34 (391)
T PRK07588          1 MKVAISGAGIAGPTLAYWLRRYGHEPTLIERAPE   34 (391)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCCceEEEeCCCC
Confidence            4899999999999999999999999999999653

>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit

Probab=98.91  E-value=7e-09  Score=97.41  Aligned_cols=54  Identities=20%  Similarity=0.192  Sum_probs=42.5

Q ss_pred             CcHHHHHHHHHHHc-CcEEEcCcceeEEEecCCCcEEEEEe----cCc--eEEcCEEEECCC
Q 020312          232 GELPQAFARLSAVY-GGTYMLNKPECKVEFDEEGKVVGVTS----EGE--TAKCKKVVCDPS  286 (328)
Q Consensus       232 ~~l~~~l~~~~~~~-G~~i~~~~~V~~I~~~~~~~v~~v~~----~g~--~~~ad~vV~~~~  286 (328)
                      ..|.++|.+.+.+. |++++.++.++++..+ ++++++|..    +++  .+.|+.||++.+
T Consensus       132 ~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~-~g~v~Gv~~~~~~~g~~~~i~AkaVILATG  192 (580)
T TIGR01176       132 FHMLHTLFQTSLTYPQIMRYDEWFVTDLLVD-DGRVCGLVAIEMAEGRLVTILADAVVLATG  192 (580)
T ss_pred             HHHHHHHHHHHHhcCCCEEEeCeEEEEEEee-CCEEEEEEEEEcCCCcEEEEecCEEEEcCC
Confidence            45888888777664 7999999999999998 788888763    343  588999886543

The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.

>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup

Probab=98.91  E-value=1.4e-08  Score=95.92  Aligned_cols=35  Identities=31%  Similarity=0.299  Sum_probs=32.3

Q ss_pred             EEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCC
Q 020312            7 VIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG   41 (328)
Q Consensus         7 vvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG   41 (328)
                      |+|||||+|||+||..++++|.+|+|+||.+.+|+
T Consensus         1 VlVVG~G~AGl~AAl~Aae~G~~VilleK~~~~~~   35 (603)
T TIGR01811         1 VIVVGTGLAGGMAAAKLAELGYHVKLFSYVDAPRR   35 (603)
T ss_pred             CEEECccHHHHHHHHHHHHcCCCEEEEEecCCCCC
Confidence            68999999999999999999999999999986553

This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.

>PRK09231 fumarate reductase flavoprotein subunit; Validated

Probab=98.90  E-value=2.7e-08  Score=93.67  Aligned_cols=40  Identities=13%  Similarity=0.115  Sum_probs=35.8

Q ss_pred             cccEEEECCChhHHHHHHhhhhCC--CeEEEeccCCCCCCcc
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDG--LKVLHMDRNDYYGGES   43 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G--~~V~vlE~~~~~GG~~   43 (328)
                      ++||+|||||+|||+||..++++|  .+|+|+||....||.+
T Consensus         4 ~~DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK~~~~~g~s   45 (582)
T PRK09231          4 QADLAIIGAGGAGLRAAIAAAEANPNLKIALISKVYPMRSHT   45 (582)
T ss_pred             eeeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCCCh
Confidence            689999999999999999999874  7999999998877744

>PLN02697 lycopene epsilon cyclase

Probab=98.89  E-value=2.2e-08  Score=92.37  Aligned_cols=57  Identities=14%  Similarity=0.183  Sum_probs=43.0

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe-cCceEEcCEEEECCCCCcc
Q 020312          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLPN  290 (328)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~-~g~~~~ad~vV~~~~~~~~  290 (328)
                      ..+.+.|.+.+.+.|+++ ++++|++|..+ ++.+..+.+ ++++++|+.||.+.+..+.
T Consensus       192 ~~L~~~Ll~~a~~~GV~~-~~~~V~~I~~~-~~~~~vv~~~dG~~i~A~lVI~AdG~~S~  249 (529)
T PLN02697        192 TLLHEELLRRCVESGVSY-LSSKVDRITEA-SDGLRLVACEDGRVIPCRLATVASGAASG  249 (529)
T ss_pred             HHHHHHHHHHHHhcCCEE-EeeEEEEEEEc-CCcEEEEEEcCCcEEECCEEEECCCcChh
Confidence            346677777788889998 78899999887 555544444 7788999999987776553

>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated

Probab=98.89  E-value=2.6e-08  Score=93.41  Aligned_cols=37  Identities=30%  Similarity=0.451  Sum_probs=34.5

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCC
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYG   40 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~G   40 (328)
                      ++||+|||||++||++|..|+++|++|+|+|+...+.
T Consensus        10 ~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~~   46 (538)
T PRK06183         10 DTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLY   46 (538)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCC
Confidence            6899999999999999999999999999999987654

>COG3573 Predicted oxidoreductase [General function prediction only]

Probab=98.88  E-value=8.7e-08  Score=80.48  Aligned_cols=39  Identities=36%  Similarity=0.587  Sum_probs=35.1

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEeccCC--CCCCc
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND--YYGGE   42 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~--~~GG~   42 (328)
                      ++||+|||+|++||.||.+|+.+|++|+|+|+..  .+||.
T Consensus         5 ~~dvivvgaglaglvaa~elA~aG~~V~ildQEgeqnlGGQ   45 (552)
T COG3573           5 TADVIVVGAGLAGLVAAAELADAGKRVLILDQEGEQNLGGQ   45 (552)
T ss_pred             cccEEEECccHHHHHHHHHHHhcCceEEEEcccccccccce
Confidence            6899999999999999999999999999999864  36664

>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]

Probab=98.87  E-value=6.8e-08  Score=90.00  Aligned_cols=36  Identities=36%  Similarity=0.632  Sum_probs=33.5

Q ss_pred             CCCcccEEEECCChhHHHHHHhhhhCCCeEEEeccC
Q 020312            1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRN   36 (328)
Q Consensus         1 ~~~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~   36 (328)
                      |..++|+||||+|.+|.+.|.+|+..|.+|+|||+.
T Consensus         4 ~~~~~D~vIVGsG~aG~~lA~rLs~~g~~VllLEaG   39 (542)
T COG2303           4 MKMEYDYVIVGSGSAGSVLAARLSDAGLSVLVLEAG   39 (542)
T ss_pred             ccCCCCEEEECCCchhHHHHHHhcCCCCeEEEEeCC
Confidence            456799999999999999999999999999999994

>PRK09077 L-aspartate oxidase; Provisional

Probab=98.87  E-value=4.3e-08  Score=91.56  Aligned_cols=39  Identities=21%  Similarity=0.353  Sum_probs=35.5

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCcc
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGES   43 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~   43 (328)
                      ++||+|||+|++||+||+.+++. .+|+|+||....||.+
T Consensus         8 ~~DVlVVG~G~AGl~AA~~aa~~-~~VilveK~~~~~g~t   46 (536)
T PRK09077          8 QCDVLIIGSGAAGLSLALRLAEH-RRVAVLSKGPLSEGST   46 (536)
T ss_pred             cCCEEEECchHHHHHHHHHHHHC-CCEEEEeccCCCCCCh
Confidence            58999999999999999999986 8999999998877753

>PRK08132 FAD-dependent oxidoreductase; Provisional

Probab=98.86  E-value=9.5e-08  Score=89.83  Aligned_cols=37  Identities=27%  Similarity=0.364  Sum_probs=34.4

Q ss_pred             CcccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCC
Q 020312            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY   39 (328)
Q Consensus         3 ~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~   39 (328)
                      .++||+|||||++||++|+.|+++|++|+|+|+++.+
T Consensus        22 ~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~   58 (547)
T PRK08132         22 ARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTL   58 (547)
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCC
Confidence            4689999999999999999999999999999998754

>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit

Probab=98.86  E-value=1.7e-07  Score=83.26  Aligned_cols=60  Identities=15%  Similarity=0.235  Sum_probs=50.2

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe-cC--ceEEcCEEEECCCCC-cchh
Q 020312          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EG--ETAKCKKVVCDPSYL-PNKV  292 (328)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~-~g--~~~~ad~vV~~~~~~-~~~~  292 (328)
                      ..+.++|.+.++++|++++.+++|+++..+ ++++++|.+ ++  ..++||+||++++.+ +..+
T Consensus       263 ~RL~~aL~~~~~~~Gg~il~g~~V~~i~~~-~~~v~~V~t~~g~~~~l~AD~vVLAaGaw~S~gL  326 (419)
T TIGR03378       263 IRLEEALKHRFEQLGGVMLPGDRVLRAEFE-GNRVTRIHTRNHRDIPLRADHFVLASGSFFSNGL  326 (419)
T ss_pred             HHHHHHHHHHHHHCCCEEEECcEEEEEEee-CCeEEEEEecCCccceEECCEEEEccCCCcCHHH
Confidence            458899999999999999999999999988 788888886 44  489999988877766 6544

Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=98.83  E-value=2.6e-09  Score=94.65  Aligned_cols=63  Identities=22%  Similarity=0.284  Sum_probs=49.8

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe----cCce--EEcCEEEECCCCCcchhhh
Q 020312          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS----EGET--AKCKKVVCDPSYLPNKVII  294 (328)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~----~g~~--~~ad~vV~~~~~~~~~~~~  294 (328)
                      ..+.-+++-.+..+|..+.-+.+|.++..++++++.++++    +|++  ++|+.||.+.+++.+.+++
T Consensus       224 aRmnl~vAlTA~r~GA~v~Nh~ev~~Llkd~~~kv~Ga~~rD~iTG~e~~I~Ak~VVNATGpfsDsIr~  292 (680)
T KOG0042|consen  224 ARMNLAVALTAARNGATVLNHVEVVSLLKDKDGKVIGARARDHITGKEYEIRAKVVVNATGPFSDSIRK  292 (680)
T ss_pred             HHHHHHHHHHHHhcchhhhhHHHHHHHhhCCCCceeeeEEEEeecCcEEEEEEEEEEeCCCCccHHHHh
Confidence            3467777766788999999999999999987788888875    5665  6788899888888776654

>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated

Probab=98.82  E-value=8.4e-08  Score=86.14  Aligned_cols=54  Identities=22%  Similarity=0.305  Sum_probs=43.7

Q ss_pred             cHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe-cCc--eEEcCEEEECCCC
Q 020312          233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGE--TAKCKKVVCDPSY  287 (328)
Q Consensus       233 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~-~g~--~~~ad~vV~~~~~  287 (328)
                      .+.+.|.+.+++.|++++++++|+++..+ +++++.+.+ +++  .++||.||++++.
T Consensus       260 rL~~aL~~~l~~~Gv~I~~g~~V~~v~~~-~~~V~~v~~~~g~~~~i~AD~VVLAtGr  316 (422)
T PRK05329        260 RLQNALRRAFERLGGRIMPGDEVLGAEFE-GGRVTAVWTRNHGDIPLRARHFVLATGS  316 (422)
T ss_pred             HHHHHHHHHHHhCCCEEEeCCEEEEEEEe-CCEEEEEEeeCCceEEEECCEEEEeCCC
Confidence            68888999999999999999999999987 677766555 443  5899998876554

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=98.81  E-value=4.3e-09  Score=95.99  Aligned_cols=43  Identities=23%  Similarity=0.312  Sum_probs=39.6

Q ss_pred             CCcccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCccc
Q 020312            2 DEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (328)
Q Consensus         2 ~~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~   44 (328)
                      ....+|+|||||++||+||.+|.++|++|+|+|+++.+||...
T Consensus         8 ~~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~W~   50 (461)
T PLN02172          8 INSQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLWV   50 (461)
T ss_pred             CCCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCcceee
Confidence            3468999999999999999999999999999999999999753

>PRK06475 salicylate hydroxylase; Provisional

Probab=98.80  E-value=7.6e-08  Score=86.96  Aligned_cols=35  Identities=14%  Similarity=0.186  Sum_probs=32.3

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY   39 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~   39 (328)
                      -+|+|||||++||++|..|+++|++|+|+|+.+.+
T Consensus         3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~~   37 (400)
T PRK06475          3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQEL   37 (400)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcc
Confidence            47999999999999999999999999999997643

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=98.78  E-value=6.1e-09  Score=95.86  Aligned_cols=45  Identities=22%  Similarity=0.290  Sum_probs=40.7

Q ss_pred             CCcccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCccccc
Q 020312            2 DEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSL   46 (328)
Q Consensus         2 ~~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~s~   46 (328)
                      +.+|||+|||||++|++||.+|+++|++|+|+|+++.+||.+...
T Consensus         3 ~~~yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~~~GG~~~~~   47 (461)
T PRK05249          3 MYDYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNVGGGCTHT   47 (461)
T ss_pred             CccccEEEECCCHHHHHHHHHHHhCCCEEEEEecccccccccccc
Confidence            346999999999999999999999999999999998999987443

>PRK06116 glutathione reductase; Validated

Probab=98.78  E-value=5.6e-09  Score=95.77  Aligned_cols=43  Identities=28%  Similarity=0.462  Sum_probs=39.6

Q ss_pred             CCCcccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCccc
Q 020312            1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (328)
Q Consensus         1 ~~~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~   44 (328)
                      |+.+|||+|||||++|++||..|+++|++|+|+|+. .+||.|.
T Consensus         1 m~~~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~-~~GG~c~   43 (450)
T PRK06116          1 MTKDYDLIVIGGGSGGIASANRAAMYGAKVALIEAK-RLGGTCV   43 (450)
T ss_pred             CCCCCCEEEECCCHHHHHHHHHHHHCCCeEEEEecc-chhhhhh
Confidence            777899999999999999999999999999999995 7888764

>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit

Probab=98.77  E-value=9.1e-08  Score=90.03  Aligned_cols=56  Identities=16%  Similarity=0.144  Sum_probs=40.6

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCcceeEEEecCC--CcEEEEEe----cCc--eEEcCEEEECCCC
Q 020312          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEE--GKVVGVTS----EGE--TAKCKKVVCDPSY  287 (328)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~--~~v~~v~~----~g~--~~~ad~vV~~~~~  287 (328)
                      ..+...+...+++.+++++.++.|+++..+++  |++++|..    +++  .+.|+.||++.+-
T Consensus       126 ~~~~r~l~~~l~~~~~~i~~~~~v~~Ll~d~~~~GrV~Gv~~~~~~~g~~~~i~AkaVVLATGG  189 (614)
T TIGR02061       126 ESYKPIVAEAAKNALGDIFERIFIVKLLLDKNTPNRIAGAVGFNVRANEVHVFKAKTVIVAAGG  189 (614)
T ss_pred             hhHHHHHHHHHHhCCCeEEcccEEEEEEecCCCCCeEEEEEEEEeCCCcEEEEECCEEEECCCc
Confidence            44555555556667789999999999998732  78888864    343  4789999876554

During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.

>PRK06370 mercuric reductase; Validated

Probab=98.76  E-value=8.4e-09  Score=94.93  Aligned_cols=43  Identities=30%  Similarity=0.458  Sum_probs=38.5

Q ss_pred             CCCcccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCccc
Q 020312            1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (328)
Q Consensus         1 ~~~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~   44 (328)
                      |+.+|||+|||||++|++||..|+++|++|+|+|+. .+||.|.
T Consensus         2 ~~~~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~   44 (463)
T PRK06370          2 PAQRYDAIVIGAGQAGPPLAARAAGLGMKVALIERG-LLGGTCV   44 (463)
T ss_pred             CCccccEEEECCCHHHHHHHHHHHhCCCeEEEEecC-ccCCcee
Confidence            677899999999999999999999999999999996 5666553

>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria

Probab=98.75  E-value=1.7e-07  Score=82.41  Aligned_cols=52  Identities=21%  Similarity=0.246  Sum_probs=38.7

Q ss_pred             HHHHHHHHHHH-cCcEEEcCcceeEEEecCCCcEEEEEe-cCceEEcCEEEECCCC
Q 020312          234 LPQAFARLSAV-YGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSY  287 (328)
Q Consensus       234 l~~~l~~~~~~-~G~~i~~~~~V~~I~~~~~~~v~~v~~-~g~~~~ad~vV~~~~~  287 (328)
                      +-+.+.+.+++ .+++++ +.+|++|..+ ++++.+|.+ +|+.+.||.||.+.+.
T Consensus        97 y~~~~~~~l~~~~nl~i~-~~~V~~l~~e-~~~v~GV~~~~g~~~~a~~vVlaTGt  150 (392)
T PF01134_consen   97 YSRAMREKLESHPNLTII-QGEVTDLIVE-NGKVKGVVTKDGEEIEADAVVLATGT  150 (392)
T ss_dssp             HHHHHHHHHHTSTTEEEE-ES-EEEEEEC-TTEEEEEEETTSEEEEECEEEE-TTT
T ss_pred             HHHHHHHHHhcCCCeEEE-EcccceEEec-CCeEEEEEeCCCCEEecCEEEEeccc
Confidence            33444455555 367775 7899999998 899999999 8889999998876655

Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.74  E-value=8.8e-09  Score=94.71  Aligned_cols=43  Identities=26%  Similarity=0.354  Sum_probs=39.5

Q ss_pred             CcccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCcccc
Q 020312            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSS   45 (328)
Q Consensus         3 ~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~s   45 (328)
                      ++|||+|||||++|++||..++++|++|+|+|+++.+||.|-.
T Consensus         2 ~~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~~~GG~c~~   44 (466)
T PRK06115          2 ASYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTLGGTCLN   44 (466)
T ss_pred             CcccEEEECCCHHHHHHHHHHHhCCCeEEEEecCCceeeeecc
Confidence            4699999999999999999999999999999998889998733

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.73  E-value=1.2e-08  Score=93.98  Aligned_cols=45  Identities=24%  Similarity=0.302  Sum_probs=41.5

Q ss_pred             CCCcccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCcccc
Q 020312            1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSS   45 (328)
Q Consensus         1 ~~~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~s   45 (328)
                      |+.+|||+|||||.+|++||..|++.|++|+|+|+.+.+||.|..
T Consensus         1 ~~~~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~~GG~c~n   45 (471)
T PRK06467          1 MEIKTQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTLGGVCLN   45 (471)
T ss_pred             CCccceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCcccccccC
Confidence            677899999999999999999999999999999998889997643

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=98.72  E-value=1.3e-08  Score=93.89  Aligned_cols=44  Identities=25%  Similarity=0.428  Sum_probs=40.3

Q ss_pred             CCCcccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCcccc
Q 020312            1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSS   45 (328)
Q Consensus         1 ~~~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~s   45 (328)
                      |.+.|||+|||||.+|++||..|+++|++|+|+|+. .+||.|..
T Consensus         1 ~~~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~~   44 (472)
T PRK05976          1 MAKEYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKG-KLGGTCLH   44 (472)
T ss_pred             CCccccEEEECCCHHHHHHHHHHHhCCCeEEEEEcc-CCCcceEc
Confidence            677899999999999999999999999999999995 78997744

>PRK09897 hypothetical protein; Provisional

Probab=98.71  E-value=2.2e-07  Score=85.91  Aligned_cols=38  Identities=18%  Similarity=0.225  Sum_probs=33.5

Q ss_pred             cEEEECCChhHHHHHHhhhhCC--CeEEEeccCCCCC-Ccc
Q 020312            6 DVIVLGTGLKECILSGLLSVDG--LKVLHMDRNDYYG-GES   43 (328)
Q Consensus         6 dvvIvG~G~aGl~aA~~L~~~G--~~V~vlE~~~~~G-G~~   43 (328)
                      +|+|||||.+|+++|.+|.+.+  .+|+|+|++..+| |..
T Consensus         3 ~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G~G~a   43 (534)
T PRK09897          3 KIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAGVGMP   43 (534)
T ss_pred             eEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCCccee
Confidence            8999999999999999998765  5899999998887 543

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=98.71  E-value=1.3e-08  Score=93.06  Aligned_cols=42  Identities=33%  Similarity=0.511  Sum_probs=38.2

Q ss_pred             CcccEEEECCChhHHHHHHhhhhCCCeEEEeccCCC-CCCccc
Q 020312            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY-YGGESS   44 (328)
Q Consensus         3 ~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~-~GG~~~   44 (328)
                      ++|||+|||||++|++||..|++.|++|+|+|+++. +||.|-
T Consensus         2 ~~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~~~~GG~c~   44 (438)
T PRK07251          2 LTYDLIVIGFGKAGKTLAAKLASAGKKVALVEESKAMYGGTCI   44 (438)
T ss_pred             CccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCCcccceeee
Confidence            479999999999999999999999999999999874 688753

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.70  E-value=1.7e-08  Score=93.02  Aligned_cols=45  Identities=31%  Similarity=0.520  Sum_probs=39.6

Q ss_pred             CCCcccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCccccc
Q 020312            1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSL   46 (328)
Q Consensus         1 ~~~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~s~   46 (328)
                      |+++|||+|||||++|++||.+|+++|++|+|+|++ .+||.|...
T Consensus         1 ~~~~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~-~~GG~c~~~   45 (466)
T PRK07818          1 MMTHYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKK-YWGGVCLNV   45 (466)
T ss_pred             CCCcCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC-CCCCceecC
Confidence            677899999999999999999999999999999985 677766443

>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=98.70  E-value=1.6e-08  Score=91.83  Aligned_cols=38  Identities=24%  Similarity=0.413  Sum_probs=35.1

Q ss_pred             CCcccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCC
Q 020312            2 DEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY   39 (328)
Q Consensus         2 ~~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~   39 (328)
                      +.++||+|||||++||++|..|+++|++|+|+|+++..
T Consensus        16 ~~~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~   53 (415)
T PRK07364         16 SLTYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAE   53 (415)
T ss_pred             ccccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCcc
Confidence            45789999999999999999999999999999998754

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=98.70  E-value=1.5e-08  Score=92.67  Aligned_cols=57  Identities=18%  Similarity=0.222  Sum_probs=44.3

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEecCceEEcCEEEECCCCCcc
Q 020312          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPN  290 (328)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~~g~~~~ad~vV~~~~~~~~  290 (328)
                      ..+.+.+.+.+++.|+++++++.|++|..+ ++.+ .++++++++.+|.||++++..|+
T Consensus       199 ~~~~~~l~~~l~~~gV~v~~~~~v~~i~~~-~~~v-~v~~~~g~i~~D~vl~a~G~~pn  255 (441)
T PRK08010        199 RDIADNIATILRDQGVDIILNAHVERISHH-ENQV-QVHSEHAQLAVDALLIASGRQPA  255 (441)
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCEEEEEEEc-CCEE-EEEEcCCeEEeCEEEEeecCCcC
Confidence            346677778889999999999999999876 5543 34555556999999988877664

>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=98.69  E-value=1.8e-08  Score=90.70  Aligned_cols=38  Identities=24%  Similarity=0.267  Sum_probs=34.9

Q ss_pred             CCcccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCC
Q 020312            2 DEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY   39 (328)
Q Consensus         2 ~~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~   39 (328)
                      ++++||+|||||++|+++|+.|+++|++|+|+|+.+.+
T Consensus         5 ~~~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~~   42 (388)
T PRK07494          5 KEHTDIAVIGGGPAGLAAAIALARAGASVALVAPEPPY   42 (388)
T ss_pred             CCCCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCCC
Confidence            45689999999999999999999999999999998654

>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways

Probab=98.69  E-value=1.3e-08  Score=90.18  Aligned_cols=56  Identities=23%  Similarity=0.222  Sum_probs=40.8

Q ss_pred             cHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe---cCc--eEEcCEEEECCCCCc
Q 020312          233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS---EGE--TAKCKKVVCDPSYLP  289 (328)
Q Consensus       233 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~---~g~--~~~ad~vV~~~~~~~  289 (328)
                      .+-+.|.+.+++.|++++++++|+++..+ ++.+..+..   +++  +++||.||.+-+..+
T Consensus       112 ~l~~~L~~~~~~~gv~i~~~~~v~~~~~d-~~~~~~~~~~~~~g~~~~i~adlvVgADG~~S  172 (356)
T PF01494_consen  112 ELDRALREEAEERGVDIRFGTRVVSIEQD-DDGVTVVVRDGEDGEEETIEADLVVGADGAHS  172 (356)
T ss_dssp             HHHHHHHHHHHHHTEEEEESEEEEEEEEE-TTEEEEEEEETCTCEEEEEEESEEEE-SGTT-
T ss_pred             HHHHhhhhhhhhhhhhheeeeeccccccc-ccccccccccccCCceeEEEEeeeecccCccc
Confidence            46667778888899999999999999988 666544443   232  689999887665543

In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....

>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.69  E-value=1.6e-08  Score=90.91  Aligned_cols=41  Identities=29%  Similarity=0.355  Sum_probs=38.6

Q ss_pred             CCcccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCc
Q 020312            2 DEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGE   42 (328)
Q Consensus         2 ~~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~   42 (328)
                      +...+|+|||||+|||++|.+|.+.|++|+|+||.+.+||.
T Consensus         4 ~~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGl   44 (448)
T KOG1399|consen    4 MMSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGL   44 (448)
T ss_pred             CCCCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccce
Confidence            44689999999999999999999999999999999999995

>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle

Probab=98.68  E-value=1.5e-07  Score=83.10  Aligned_cols=56  Identities=18%  Similarity=0.220  Sum_probs=43.9

Q ss_pred             cCcHHHHHHHHHHHc-CcEEEcCcceeEEEecCCCcEEEEEe------cCceEEcCEEEECCCC
Q 020312          231 LGELPQAFARLSAVY-GGTYMLNKPECKVEFDEEGKVVGVTS------EGETAKCKKVVCDPSY  287 (328)
Q Consensus       231 ~~~l~~~l~~~~~~~-G~~i~~~~~V~~I~~~~~~~v~~v~~------~g~~~~ad~vV~~~~~  287 (328)
                      ++.+.+.|.+.+++. |++++++++|++|++..+|. +.|.+      +.++++|+.|++.++-
T Consensus       180 FG~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~dg~-W~v~~~~~~~~~~~~v~a~FVfvGAGG  242 (488)
T PF06039_consen  180 FGALTRQLVEYLQKQKGFELHLNHEVTDIKRNGDGR-WEVKVKDLKTGEKREVRAKFVFVGAGG  242 (488)
T ss_pred             HHHHHHHHHHHHHhCCCcEEEecCEeCeeEECCCCC-EEEEEEecCCCCeEEEECCEEEECCch
Confidence            578999999998888 99999999999999984554 33332      3357999999876653

The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process

>PLN02785 Protein HOTHEAD

Probab=98.67  E-value=5.5e-07  Score=84.59  Aligned_cols=34  Identities=38%  Similarity=0.644  Sum_probs=31.4

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEeccCCC
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~   38 (328)
                      .||+||||||.+|+.+|..|++ +.+|+|||++..
T Consensus        55 ~yD~IIVG~G~aG~~lA~~Ls~-~~~VLllE~G~~   88 (587)
T PLN02785         55 AYDYIVVGGGTAGCPLAATLSQ-NFSVLLLERGGV   88 (587)
T ss_pred             cCCEEEECcCHHHHHHHHHHhc-CCcEEEEecCCC
Confidence            5999999999999999999999 699999999653

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=98.66  E-value=2.2e-08  Score=91.68  Aligned_cols=57  Identities=12%  Similarity=0.061  Sum_probs=43.5

Q ss_pred             cHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe-cC-ceEEcCEEEECCCCCcc
Q 020312          233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EG-ETAKCKKVVCDPSYLPN  290 (328)
Q Consensus       233 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~-~g-~~~~ad~vV~~~~~~~~  290 (328)
                      .+.+.+.+.+++.|+++++++.|++|..+ ++....++. ++ +.+.+|.||++++..|+
T Consensus       208 ~~~~~~~~~l~~~gI~i~~~~~v~~i~~~-~~~~~~v~~~~g~~~i~~D~vi~a~G~~pn  266 (450)
T TIGR01421       208 MISETITEEYEKEGINVHKLSKPVKVEKT-VEGKLVIHFEDGKSIDDVDELIWAIGRKPN  266 (450)
T ss_pred             HHHHHHHHHHHHcCCEEEcCCEEEEEEEe-CCceEEEEECCCcEEEEcCEEEEeeCCCcC
Confidence            46677777888899999999999999876 333233444 55 56999999988887665

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan

Probab=98.66  E-value=2.3e-07  Score=84.66  Aligned_cols=55  Identities=20%  Similarity=0.298  Sum_probs=41.1

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe-cCceEEcCEEEECCCC
Q 020312          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSY  287 (328)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~-~g~~~~ad~vV~~~~~  287 (328)
                      ..+-+-|.+.++++|++++.++ |+++..+++|.+++|++ +|++++||.||=|.++
T Consensus       154 ~~fd~~L~~~A~~~Gv~~~~g~-V~~v~~~~~g~i~~v~~~~g~~i~ad~~IDASG~  209 (454)
T PF04820_consen  154 AKFDQFLRRHAEERGVEVIEGT-VVDVELDEDGRITAVRLDDGRTIEADFFIDASGR  209 (454)
T ss_dssp             HHHHHHHHHHHHHTT-EEEET--EEEEEE-TTSEEEEEEETTSEEEEESEEEE-SGG
T ss_pred             HHHHHHHHHHHhcCCCEEEeCE-EEEEEEcCCCCEEEEEECCCCEEEEeEEEECCCc
Confidence            3466667788899999998874 88888876777888998 8888999999954443

This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=98.66  E-value=3.9e-07  Score=90.18  Aligned_cols=35  Identities=23%  Similarity=0.405  Sum_probs=33.3

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEeccCCC
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~   38 (328)
                      ++||+|||||.+||+||..++++|.+|+|+||...
T Consensus        13 ~~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~~~   47 (897)
T PRK13800         13 DCDVLVIGGGTAGTMAALTAAEHGANVLLLEKAHV   47 (897)
T ss_pred             ecCEEEECcCHHHHHHHHHHHHCCCeEEEEecccc
Confidence            58999999999999999999999999999999875

>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated

Probab=98.66  E-value=2.2e-08  Score=90.61  Aligned_cols=36  Identities=22%  Similarity=0.409  Sum_probs=34.4

Q ss_pred             CCCcccEEEECCChhHHHHHHhhhhCCCeEEEeccC
Q 020312            1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRN   36 (328)
Q Consensus         1 ~~~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~   36 (328)
                      ||..+||+|||||++||++|..|+++|++|+|+|+.
T Consensus         1 ~m~~~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~   36 (405)
T PRK08850          1 MMQSVDVAIIGGGMVGLALAAALKESDLRIAVIEGQ   36 (405)
T ss_pred             CCCcCCEEEECccHHHHHHHHHHHhCCCEEEEEcCC
Confidence            677899999999999999999999999999999996

>KOG2852 consensus Possible oxidoreductase [General function prediction only]

Probab=98.65  E-value=2.8e-07  Score=75.82  Aligned_cols=40  Identities=18%  Similarity=0.360  Sum_probs=36.5

Q ss_pred             cccEEEECCChhHHHHHHhhhhCC------CeEEEeccCCCCCCcc
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDG------LKVLHMDRNDYYGGES   43 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G------~~V~vlE~~~~~GG~~   43 (328)
                      ..+|+|||||+.|.++||+|++++      +.|+|+|.+...||.+
T Consensus        10 sk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~gaS   55 (380)
T KOG2852|consen   10 SKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAGGAS   55 (380)
T ss_pred             ceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeecccccccc
Confidence            478999999999999999999998      8999999999888853

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=98.65  E-value=2.3e-08  Score=91.57  Aligned_cols=41  Identities=27%  Similarity=0.411  Sum_probs=37.8

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCcccc
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSS   45 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~s   45 (328)
                      +|||+|||||++|++||..++++|++|+|+|+ +.+||.|..
T Consensus         2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~-~~~GG~c~~   42 (446)
T TIGR01424         2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEE-PRVGGTCVI   42 (446)
T ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEec-CccCceeec
Confidence            69999999999999999999999999999999 578997753

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

Probab=98.64  E-value=2.9e-08  Score=90.22  Aligned_cols=46  Identities=20%  Similarity=0.278  Sum_probs=41.2

Q ss_pred             CCcccEEEECCChhHHHHHHhhhhCCCe-EEEeccCCCCCCcccccc
Q 020312            2 DEEYDVIVLGTGLKECILSGLLSVDGLK-VLHMDRNDYYGGESSSLN   47 (328)
Q Consensus         2 ~~~~dvvIvG~G~aGl~aA~~L~~~G~~-V~vlE~~~~~GG~~~s~~   47 (328)
                      ++.+||+|||||.+||++|++|.++|.. ++||||++.+||.-+..+
T Consensus         6 ~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~~~r   52 (443)
T COG2072           6 ATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYNR   52 (443)
T ss_pred             CCcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcchhcc
Confidence            4579999999999999999999999988 999999999999755443

>PF13454 NAD_binding_9: FAD-NAD(P)-binding

Probab=98.64  E-value=7.2e-07  Score=69.31  Aligned_cols=31  Identities=16%  Similarity=0.254  Sum_probs=27.8

Q ss_pred             EEECCChhHHHHHHhhhhC-----CCeEEEeccCCC
Q 020312            8 IVLGTGLKECILSGLLSVD-----GLKVLHMDRNDY   38 (328)
Q Consensus         8 vIvG~G~aGl~aA~~L~~~-----G~~V~vlE~~~~   38 (328)
                      +|||+|++|++++.+|.++     ..+|+|+|++..
T Consensus         1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~   36 (156)
T PF13454_consen    1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPF   36 (156)
T ss_pred             CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCc
Confidence            6999999999999999987     478999999655

>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A

Probab=98.64  E-value=2.7e-08  Score=90.39  Aligned_cols=40  Identities=30%  Similarity=0.498  Sum_probs=33.9

Q ss_pred             cEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCcccc
Q 020312            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSS   45 (328)
Q Consensus         6 dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~s   45 (328)
                      ||||||||++|++||+.+++.|.+|+|+|+.+.+||...+
T Consensus         1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t~   40 (428)
T PF12831_consen    1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMATS   40 (428)
T ss_dssp             EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGGGG
T ss_pred             CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcceE
Confidence            8999999999999999999999999999999999997654

>PRK08013 oxidoreductase; Provisional

Probab=98.64  E-value=3.1e-08  Score=89.46  Aligned_cols=36  Identities=22%  Similarity=0.341  Sum_probs=33.9

Q ss_pred             CcccEEEECCChhHHHHHHhhhhCCCeEEEeccCCC
Q 020312            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (328)
Q Consensus         3 ~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~   38 (328)
                      +++||+|||||++|+++|..|+++|++|+|+|+++.
T Consensus         2 ~~~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~   37 (400)
T PRK08013          2 QSVDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVP   37 (400)
T ss_pred             CcCCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCC
Confidence            369999999999999999999999999999999875

>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]

Probab=98.63  E-value=3.7e-07  Score=76.34  Aligned_cols=40  Identities=28%  Similarity=0.374  Sum_probs=37.0

Q ss_pred             cEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCcccc
Q 020312            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSS   45 (328)
Q Consensus         6 dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~s   45 (328)
                      .|||||+|++||+|+-.+...|-.|+++|+..-+||++.-
T Consensus        11 pvvVIGgGLAGLsasn~iin~gg~V~llek~~s~GGNSiK   50 (477)
T KOG2404|consen   11 PVVVIGGGLAGLSASNDIINKGGIVILLEKAGSIGGNSIK   50 (477)
T ss_pred             cEEEECCchhhhhhHHHHHhcCCeEEEEeccCCcCCccee
Confidence            6999999999999999999999889999999999997543

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=98.63  E-value=3.3e-08  Score=92.73  Aligned_cols=43  Identities=26%  Similarity=0.475  Sum_probs=38.9

Q ss_pred             CCCcccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCccc
Q 020312            1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (328)
Q Consensus         1 ~~~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~   44 (328)
                      |.+.|||+|||||++||+||.+|+++|++|+|+|++ ..||.+.
T Consensus         1 m~~~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~-~~GG~~~   43 (555)
T TIGR03143         1 MEEIYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKD-DFGGQIT   43 (555)
T ss_pred             CCCcCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC-CCCceEE
Confidence            667799999999999999999999999999999995 6788654

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=98.62  E-value=3.4e-08  Score=90.97  Aligned_cols=41  Identities=32%  Similarity=0.545  Sum_probs=38.0

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCcccc
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSS   45 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~s   45 (328)
                      .|||+|||||++|++||.+|+++|++|+|+|+ +.+||.|..
T Consensus         1 ~yDvvVIG~G~aGl~aA~~la~~G~~v~lie~-~~~GG~~~~   41 (461)
T TIGR01350         1 AYDVVVIGGGPGGYVAAIRAAQLGLKVALVEK-EYLGGTCLN   41 (461)
T ss_pred             CccEEEECCCHHHHHHHHHHHhCCCeEEEEec-CCCCCceee
Confidence            48999999999999999999999999999999 889997654

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=98.62  E-value=3.8e-08  Score=90.62  Aligned_cols=41  Identities=32%  Similarity=0.478  Sum_probs=37.8

Q ss_pred             CcccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCccc
Q 020312            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (328)
Q Consensus         3 ~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~   44 (328)
                      .+|||+|||||++|++||.+|++.|++|+|+|+ +.+||.+.
T Consensus         2 ~~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~-~~~GG~~~   42 (460)
T PRK06292          2 EKYDVIVIGAGPAGYVAARRAAKLGKKVALIEK-GPLGGTCL   42 (460)
T ss_pred             CcccEEEECCCHHHHHHHHHHHHCCCeEEEEeC-Ccccccee
Confidence            469999999999999999999999999999999 77888764

>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=98.61  E-value=3.8e-08  Score=88.41  Aligned_cols=36  Identities=22%  Similarity=0.419  Sum_probs=33.3

Q ss_pred             CCCcccEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312            1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (328)
Q Consensus         1 ~~~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~   37 (328)
                      |. .+||+|||||++|+++|..|+++|++|+|+|+.+
T Consensus         1 ~~-~~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~   36 (384)
T PRK08849          1 MN-KYDIAVVGGGMVGAATALGFAKQGRSVAVIEGGE   36 (384)
T ss_pred             CC-cccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCC
Confidence            44 5899999999999999999999999999999864

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=98.60  E-value=4.5e-08  Score=90.29  Aligned_cols=46  Identities=26%  Similarity=0.443  Sum_probs=40.9

Q ss_pred             CCCcccEEEECCChhHHHHHHhhhhCCCeEEEecc------CCCCCCccccc
Q 020312            1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDR------NDYYGGESSSL   46 (328)
Q Consensus         1 ~~~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~------~~~~GG~~~s~   46 (328)
                      |+.+||++|||||++|++||.+|++.|.+|+|+|+      ...+||.|...
T Consensus         1 ~~~~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~~~~~~g~~~~Gg~c~n~   52 (475)
T PRK06327          1 MSKQFDVVVIGAGPGGYVAAIRAAQLGLKVACIEAWKNPKGKPALGGTCLNV   52 (475)
T ss_pred             CCcceeEEEECCCHHHHHHHHHHHhCCCeEEEEecccCCCCCCCcCCccccc
Confidence            67789999999999999999999999999999998      36788877543

>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]

Probab=98.60  E-value=1.9e-07  Score=77.76  Aligned_cols=46  Identities=28%  Similarity=0.402  Sum_probs=39.5

Q ss_pred             CcccEEEECCChhHHHHHHhhhhC--CCeEEEeccCCCCCCcccccch
Q 020312            3 EEYDVIVLGTGLKECILSGLLSVD--GLKVLHMDRNDYYGGESSSLNL   48 (328)
Q Consensus         3 ~~~dvvIvG~G~aGl~aA~~L~~~--G~~V~vlE~~~~~GG~~~s~~~   48 (328)
                      ..||.||||||+.||+.|.+|.-+  +.+|.|||+....+-..+..|.
T Consensus        47 ~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~la~hqSghNS   94 (453)
T KOG2665|consen   47 ERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSLAVHQSGHNS   94 (453)
T ss_pred             ccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhhceeeccccc
Confidence            369999999999999999999877  8999999998887766655554

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.59  E-value=4.5e-08  Score=90.14  Aligned_cols=42  Identities=33%  Similarity=0.476  Sum_probs=38.5

Q ss_pred             CcccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCcccc
Q 020312            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSS   45 (328)
Q Consensus         3 ~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~s   45 (328)
                      .+|||+|||||++|++||..|+++|++|+|+|+.. +||.|..
T Consensus         3 ~~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~-~GG~c~~   44 (462)
T PRK06416          3 FEYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK-LGGTCLN   44 (462)
T ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCcEEEEeccc-cccceee
Confidence            57999999999999999999999999999999977 8997644

>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit

Probab=98.58  E-value=5e-08  Score=95.49  Aligned_cols=42  Identities=21%  Similarity=0.279  Sum_probs=39.0

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCcccc
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSS   45 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~s   45 (328)
                      ..||+|||||+|||+||++|+++|++|+|+|+++.+||....
T Consensus       537 ~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lGG~l~~  578 (1012)
T TIGR03315       537 AHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGGVVKN  578 (1012)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccCceeee
Confidence            379999999999999999999999999999999999998643

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.

>PRK07236 hypothetical protein; Provisional

Probab=98.58  E-value=5.3e-08  Score=87.55  Aligned_cols=36  Identities=22%  Similarity=0.233  Sum_probs=33.5

Q ss_pred             CcccEEEECCChhHHHHHHhhhhCCCeEEEeccCCC
Q 020312            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (328)
Q Consensus         3 ~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~   38 (328)
                      ..+||+|||||++||++|..|+++|++|+|+|+++.
T Consensus         5 ~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (386)
T PRK07236          5 SGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPT   40 (386)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence            358999999999999999999999999999999864

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=98.58  E-value=5.1e-08  Score=96.02  Aligned_cols=41  Identities=27%  Similarity=0.357  Sum_probs=38.6

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCccc
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~   44 (328)
                      ..+|+|||||+|||+||++|+++|++|+|+|+.+.+||..+
T Consensus       306 gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l~  346 (944)
T PRK12779        306 KPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVLR  346 (944)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceEE
Confidence            47999999999999999999999999999999999999754

>TIGR02023 BchP-ChlP geranylgeranyl reductase

Probab=98.57  E-value=5.3e-08  Score=87.59  Aligned_cols=32  Identities=28%  Similarity=0.546  Sum_probs=31.3

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRN   36 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~   36 (328)
                      |||+|||||++|++||+.|+++|++|+|+|++
T Consensus         1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~   32 (388)
T TIGR02023         1 YDVAVIGGGPSGATAAETLARAGIETILLERA   32 (388)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEECC
Confidence            79999999999999999999999999999997

This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).

>PLN00093 geranylgeranyl diphosphate reductase; Provisional

Probab=98.56  E-value=5.8e-08  Score=88.52  Aligned_cols=34  Identities=21%  Similarity=0.358  Sum_probs=32.6

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~   37 (328)
                      ++||+|||||++|++||+.|+++|++|+|+|++.
T Consensus        39 ~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~   72 (450)
T PLN00093         39 KLRVAVIGGGPAGACAAETLAKGGIETFLIERKL   72 (450)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence            5899999999999999999999999999999975

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=98.56  E-value=6.2e-08  Score=78.92  Aligned_cols=37  Identities=27%  Similarity=0.450  Sum_probs=31.0

Q ss_pred             EEECCChhHHHHHHhhhhCCCe-EEEeccCCCCCCccc
Q 020312            8 IVLGTGLKECILSGLLSVDGLK-VLHMDRNDYYGGESS   44 (328)
Q Consensus         8 vIvG~G~aGl~aA~~L~~~G~~-V~vlE~~~~~GG~~~   44 (328)
                      +|||||++||++|++|.++|.+ |+|||+++.+||...
T Consensus         1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg~w~   38 (203)
T PF13738_consen    1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPGGVWR   38 (203)
T ss_dssp             EEE--SHHHHHHHHHHHHTT---EEEEESSSSSTTHHH
T ss_pred             CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCCeeE
Confidence            6999999999999999999999 999999999999754

...

>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=98.56  E-value=4.8e-08  Score=83.87  Aligned_cols=46  Identities=26%  Similarity=0.328  Sum_probs=37.2

Q ss_pred             CCcccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCcccccc
Q 020312            2 DEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLN   47 (328)
Q Consensus         2 ~~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~   47 (328)
                      ++.+||+|||||++||+||.+++++|.+++|++....+||......
T Consensus         1 ~~~~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~~~gg~~~~~~   46 (305)
T COG0492           1 MKIYDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGEPGGQLTKTT   46 (305)
T ss_pred             CceeeEEEECCCHHHHHHHHHHHHcCCCcEEEEecCCcCCccccce
Confidence            3579999999999999999999999999555555577777655543

>TIGR00136 gidA glucose-inhibited division protein A

Probab=98.55  E-value=8.2e-07  Score=82.31  Aligned_cols=38  Identities=32%  Similarity=0.353  Sum_probs=33.8

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCc
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGE   42 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~   42 (328)
                      |||+|||||++|+.||+.+++.|.+|+|+|++...+|.
T Consensus         1 yDViVIGaG~AGl~aA~ala~~G~~v~Lie~~~~~~g~   38 (617)
T TIGR00136         1 FDVIVIGGGHAGCEAALAAARMGAKTLLLTLNLDTIGK   38 (617)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCCCEEEEecccccccC
Confidence            69999999999999999999999999999997544443

GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).

>TIGR02028 ChlP geranylgeranyl reductase

Probab=98.55  E-value=7.4e-08  Score=86.79  Aligned_cols=36  Identities=19%  Similarity=0.316  Sum_probs=33.2

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYG   40 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~G   40 (328)
                      +||+|||||++|++||+.|+++|++|+|+|+....+
T Consensus         1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~~~   36 (398)
T TIGR02028         1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKPDNA   36 (398)
T ss_pred             CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCCCCC
Confidence            689999999999999999999999999999986544

This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.

>PRK14694 putative mercuric reductase; Provisional

Probab=98.55  E-value=7.6e-08  Score=88.67  Aligned_cols=57  Identities=11%  Similarity=0.170  Sum_probs=44.9

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEecCceEEcCEEEECCCCCcc
Q 020312          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPN  290 (328)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~~g~~~~ad~vV~~~~~~~~  290 (328)
                      ..+.+.+.+.+++.|+++++++.|++|+.+ ++. +.++++++++.+|.||++++..|+
T Consensus       218 ~~~~~~l~~~l~~~GI~v~~~~~v~~i~~~-~~~-~~v~~~~~~i~~D~vi~a~G~~pn  274 (468)
T PRK14694        218 PAVGEAIEAAFRREGIEVLKQTQASEVDYN-GRE-FILETNAGTLRAEQLLVATGRTPN  274 (468)
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCEEEEEEEc-CCE-EEEEECCCEEEeCEEEEccCCCCC
Confidence            356777888888999999999999999876 443 345556668999999988877655

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=98.54  E-value=7.8e-08  Score=83.32  Aligned_cols=39  Identities=28%  Similarity=0.448  Sum_probs=35.5

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCccc
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~   44 (328)
                      |||+|||||++||+||..|++.|++|+|+|+++ +||...
T Consensus         1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~-~gg~~~   39 (300)
T TIGR01292         1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGME-PGGQLT   39 (300)
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEeccC-CCccee
Confidence            699999999999999999999999999999987 677544

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]

Probab=98.54  E-value=6.8e-08  Score=84.89  Aligned_cols=43  Identities=28%  Similarity=0.410  Sum_probs=39.8

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCcccccc
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLN   47 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~   47 (328)
                      -+++|||||++|++||..|++.|++|.++|+++.+||+....+
T Consensus       125 ~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiGGrmak~~  167 (622)
T COG1148         125 KSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGGRMAKLN  167 (622)
T ss_pred             cceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCcccccHHhhh
Confidence            5799999999999999999999999999999999999976543

>PRK12831 putative oxidoreductase; Provisional

Probab=98.54  E-value=8.9e-08  Score=87.83  Aligned_cols=41  Identities=24%  Similarity=0.234  Sum_probs=38.5

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCccc
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~   44 (328)
                      ..||+|||||++||+||++|+++|++|+|+|+.+.+||...
T Consensus       140 ~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~  180 (464)
T PRK12831        140 GKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPGGVLV  180 (464)
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCCeee
Confidence            58999999999999999999999999999999999999753

>PTZ00052 thioredoxin reductase; Provisional

Probab=98.52  E-value=9.3e-08  Score=88.57  Aligned_cols=56  Identities=14%  Similarity=0.183  Sum_probs=44.0

Q ss_pred             cHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe-cCceEEcCEEEECCCCCcc
Q 020312          233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLPN  290 (328)
Q Consensus       233 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~-~g~~~~ad~vV~~~~~~~~  290 (328)
                      .+.+.+.+.+++.|+++++++.|++|... ++.+ .++. +++++.+|.||.+.+..|+
T Consensus       223 ~~~~~l~~~l~~~GV~i~~~~~v~~v~~~-~~~~-~v~~~~g~~i~~D~vl~a~G~~pn  279 (499)
T PTZ00052        223 QCSEKVVEYMKEQGTLFLEGVVPINIEKM-DDKI-KVLFSDGTTELFDTVLYATGRKPD  279 (499)
T ss_pred             HHHHHHHHHHHHcCCEEEcCCeEEEEEEc-CCeE-EEEECCCCEEEcCEEEEeeCCCCC
Confidence            35677778888999999999999999876 4443 3444 6788999999988887665

>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase

Probab=98.52  E-value=8.3e-08  Score=86.32  Aligned_cols=35  Identities=23%  Similarity=0.448  Sum_probs=33.2

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEeccCCC
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~   38 (328)
                      ++||+|||||++||++|..|+++|++|+|+|+.+.
T Consensus         2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~   36 (390)
T TIGR02360         2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSR   36 (390)
T ss_pred             CceEEEECccHHHHHHHHHHHHCCCCEEEEECCCC
Confidence            47999999999999999999999999999999874

Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.

>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=98.52  E-value=8.6e-08  Score=86.50  Aligned_cols=34  Identities=32%  Similarity=0.418  Sum_probs=32.4

Q ss_pred             CcccEEEECCChhHHHHHHhhhhC---CCeEEEeccC
Q 020312            3 EEYDVIVLGTGLKECILSGLLSVD---GLKVLHMDRN   36 (328)
Q Consensus         3 ~~~dvvIvG~G~aGl~aA~~L~~~---G~~V~vlE~~   36 (328)
                      +.+||+|||||++|+++|+.|+++   |++|+|+|+.
T Consensus         2 ~~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~   38 (395)
T PRK05732          2 SRMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAF   38 (395)
T ss_pred             CcCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCC
Confidence            579999999999999999999998   9999999995

>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed

Probab=98.51  E-value=9.2e-08  Score=86.20  Aligned_cols=35  Identities=20%  Similarity=0.363  Sum_probs=33.0

Q ss_pred             CcccEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (328)
Q Consensus         3 ~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~   37 (328)
                      +++||+|||||++|+++|..|+++|++|+|+|+..
T Consensus         4 ~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~   38 (391)
T PRK08020          4 QPTDIAIVGGGMVGAALALGLAQHGFSVAVLEHAA   38 (391)
T ss_pred             ccccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCC
Confidence            36899999999999999999999999999999975

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=98.51  E-value=1.1e-07  Score=85.93  Aligned_cols=46  Identities=30%  Similarity=0.494  Sum_probs=42.1

Q ss_pred             CCCcccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCccccc
Q 020312            1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSL   46 (328)
Q Consensus         1 ~~~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~s~   46 (328)
                      |+.+||++|||+|.+|.+||..+++.|.+|+++|++...||.|-..
T Consensus         1 ~~~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~~lGGtCln~   46 (454)
T COG1249           1 MMKEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERLGGTCLNV   46 (454)
T ss_pred             CCccccEEEECCCHHHHHHHHHHHhCCCCEEEEeecCCcCceEEee
Confidence            6778999999999999999999999999999999998899977544

>PRK06753 hypothetical protein; Provisional

Probab=98.51  E-value=9.8e-08  Score=85.47  Aligned_cols=36  Identities=19%  Similarity=0.402  Sum_probs=33.3

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYG   40 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~G   40 (328)
                      +||+|||||++||++|..|+++|++|+|+|+++.+.
T Consensus         1 ~~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~   36 (373)
T PRK06753          1 MKIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESVK   36 (373)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccc
Confidence            489999999999999999999999999999987653

>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]

Probab=98.50  E-value=9.2e-08  Score=82.56  Aligned_cols=45  Identities=27%  Similarity=0.304  Sum_probs=39.8

Q ss_pred             CcccEEEECCChhHHHHHHhhhhC------CCeEEEeccCCCCCCcccccc
Q 020312            3 EEYDVIVLGTGLKECILSGLLSVD------GLKVLHMDRNDYYGGESSSLN   47 (328)
Q Consensus         3 ~~~dvvIvG~G~aGl~aA~~L~~~------G~~V~vlE~~~~~GG~~~s~~   47 (328)
                      +.+||+|||||.+||+||.+|.|.      ..+|+|+|+...+||.+-|..
T Consensus        75 e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~GghtlSGa  125 (621)
T KOG2415|consen   75 EEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHTLSGA  125 (621)
T ss_pred             ccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCceecce
Confidence            468999999999999999999864      478999999999999887654

>TIGR02053 MerA mercuric reductase

Probab=98.49  E-value=1.2e-07  Score=87.30  Aligned_cols=39  Identities=23%  Similarity=0.423  Sum_probs=35.7

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCccc
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~   44 (328)
                      |||+|||||++|++||..|+++|++|+|+|+.. +||.|-
T Consensus         1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~-~GG~c~   39 (463)
T TIGR02053         1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERGP-LGGTCV   39 (463)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCc-ccCCee
Confidence            799999999999999999999999999999976 777653

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>TIGR01790 carotene-cycl lycopene cyclase family protein

Probab=98.49  E-value=1.3e-07  Score=85.24  Aligned_cols=37  Identities=24%  Similarity=0.338  Sum_probs=34.3

Q ss_pred             cEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCc
Q 020312            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGE   42 (328)
Q Consensus         6 dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~   42 (328)
                      ||+|||||++|+++|+.|+++|.+|+|||+++..|+.
T Consensus         1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~~~   37 (388)
T TIGR01790         1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPGN   37 (388)
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCCC
Confidence            8999999999999999999999999999999876653

This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.

>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain

Probab=98.48  E-value=9.8e-07  Score=79.23  Aligned_cols=56  Identities=18%  Similarity=0.108  Sum_probs=46.0

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe-cCceEEcCEEEECCCCCcc
Q 020312          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLPN  290 (328)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~-~g~~~~ad~vV~~~~~~~~  290 (328)
                      ..++.+|++.+++ |++++++++|++|+.+ ++. +.|++ +++.+.||+||++++.+..
T Consensus       135 ~~~~~~l~~~~~~-G~~i~~~~~V~~i~~~-~~~-~~v~t~~g~~~~a~~vV~a~G~~~~  191 (381)
T TIGR03197       135 PQLCRALLAHAGI-RLTLHFNTEITSLERD-GEG-WQLLDANGEVIAASVVVLANGAQAG  191 (381)
T ss_pred             HHHHHHHHhccCC-CcEEEeCCEEEEEEEc-CCe-EEEEeCCCCEEEcCEEEEcCCcccc
Confidence            6789999988888 9999999999999987 555 55666 5656999999988877544

In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.

>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]

Probab=98.47  E-value=4.4e-06  Score=73.40  Aligned_cols=59  Identities=22%  Similarity=0.343  Sum_probs=51.0

Q ss_pred             cCcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe-cCceEEcCEEEECCCCCcc
Q 020312          231 LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLPN  290 (328)
Q Consensus       231 ~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~-~g~~~~ad~vV~~~~~~~~  290 (328)
                      ...++..+.+.++++|++|+++++|.+|+.. ++.+.+|.+ +|+++.||+||++++....
T Consensus       172 l~~vvkni~~~l~~~G~ei~f~t~VeDi~~~-~~~~~~v~~~~g~~i~~~~vvlA~Grsg~  231 (486)
T COG2509         172 LPKVVKNIREYLESLGGEIRFNTEVEDIEIE-DNEVLGVKLTKGEEIEADYVVLAPGRSGR  231 (486)
T ss_pred             hHHHHHHHHHHHHhcCcEEEeeeEEEEEEec-CCceEEEEccCCcEEecCEEEEccCcchH
Confidence            3457888889999999999999999999998 777777777 7789999999999987544

>PRK09853 putative selenate reductase subunit YgfK; Provisional

Probab=98.47  E-value=1.6e-07  Score=91.72  Aligned_cols=42  Identities=24%  Similarity=0.325  Sum_probs=39.0

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCcccc
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSS   45 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~s   45 (328)
                      ..+|+|||||+|||+||++|+++|++|+|+|+.+.+||..+.
T Consensus       539 gKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG~lr~  580 (1019)
T PRK09853        539 RKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGVVKN  580 (1019)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccCcceee
Confidence            469999999999999999999999999999999999997643

>PRK13748 putative mercuric reductase; Provisional

Probab=98.47  E-value=1.5e-07  Score=88.89  Aligned_cols=56  Identities=14%  Similarity=0.181  Sum_probs=44.4

Q ss_pred             cHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEecCceEEcCEEEECCCCCcc
Q 020312          233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPN  290 (328)
Q Consensus       233 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~~g~~~~ad~vV~~~~~~~~  290 (328)
                      .+.+.+.+.+++.|+++++++.|++|..+ ++.+ .+.++++++.+|.||++++..|+
T Consensus       311 ~~~~~l~~~l~~~gI~i~~~~~v~~i~~~-~~~~-~v~~~~~~i~~D~vi~a~G~~pn  366 (561)
T PRK13748        311 AIGEAVTAAFRAEGIEVLEHTQASQVAHV-DGEF-VLTTGHGELRADKLLVATGRAPN  366 (561)
T ss_pred             HHHHHHHHHHHHCCCEEEcCCEEEEEEec-CCEE-EEEecCCeEEeCEEEEccCCCcC
Confidence            46677778888999999999999999876 5543 35555557999999998887665

>PLN02852 ferredoxin-NADP+ reductase

Probab=98.45  E-value=1.9e-07  Score=85.27  Aligned_cols=42  Identities=26%  Similarity=0.207  Sum_probs=38.6

Q ss_pred             cccEEEECCChhHHHHHHhhhh--CCCeEEEeccCCCCCCcccc
Q 020312            4 EYDVIVLGTGLKECILSGLLSV--DGLKVLHMDRNDYYGGESSS   45 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~--~G~~V~vlE~~~~~GG~~~s   45 (328)
                      ..+|+|||||+|||+||..|++  .|++|+|+|+.+.+||..+.
T Consensus        26 ~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGlvr~   69 (491)
T PLN02852         26 PLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGLVRS   69 (491)
T ss_pred             CCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcceEee
Confidence            4689999999999999999987  79999999999999997764

>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=98.45  E-value=1.9e-07  Score=87.73  Aligned_cols=42  Identities=29%  Similarity=0.587  Sum_probs=38.7

Q ss_pred             CcccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCccc
Q 020312            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (328)
Q Consensus         3 ~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~   44 (328)
                      +++||+|||+|.+|++||..++++|.+|+||||...+||.+.
T Consensus         6 ~~~DvvVvG~G~aG~~aA~~aa~~G~~v~llEk~~~~gG~~~   47 (557)
T PRK07843          6 QEYDVVVVGSGAAGMVAALTAAHRGLSTVVVEKAPHYGGSTA   47 (557)
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCcccc
Confidence            368999999999999999999999999999999998888653

>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]

Probab=98.45  E-value=7.7e-07  Score=76.23  Aligned_cols=33  Identities=33%  Similarity=0.558  Sum_probs=31.7

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEeccC
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRN   36 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~   36 (328)
                      .+||+|||||++|.+.|+-|++.|.+|.|+||.
T Consensus        45 ~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERD   77 (509)
T KOG1298|consen   45 AADVIIVGAGVAGSALAYALAKDGRRVHVIERD   77 (509)
T ss_pred             cccEEEECCcchHHHHHHHHhhCCcEEEEEecc
Confidence            589999999999999999999999999999995

>PTZ00058 glutathione reductase; Provisional

Probab=98.45  E-value=1.8e-07  Score=87.28  Aligned_cols=42  Identities=26%  Similarity=0.438  Sum_probs=37.8

Q ss_pred             CcccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCcccc
Q 020312            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSS   45 (328)
Q Consensus         3 ~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~s   45 (328)
                      .+|||+|||||.+|++||..+++.|.+|+|+|++ .+||.|-.
T Consensus        47 ~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~-~~GGtCln   88 (561)
T PTZ00058         47 MVYDLIVIGGGSGGMAAARRAARNKAKVALVEKD-YLGGTCVN   88 (561)
T ss_pred             ccccEEEECcCHHHHHHHHHHHHcCCeEEEEecc-cccccccc
Confidence            3689999999999999999999999999999996 68887643

>PRK07538 hypothetical protein; Provisional

Probab=98.45  E-value=1.7e-07  Score=85.05  Aligned_cols=35  Identities=20%  Similarity=0.330  Sum_probs=32.7

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY   39 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~   39 (328)
                      +||+|||||++||++|+.|+++|++|+|+|+++.+
T Consensus         1 ~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~   35 (413)
T PRK07538          1 MKVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPEL   35 (413)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCcc
Confidence            48999999999999999999999999999998754

>TIGR02352 thiamin_ThiO glycine oxidase ThiO

Probab=98.45  E-value=2.4e-06  Score=75.31  Aligned_cols=60  Identities=13%  Similarity=0.173  Sum_probs=51.7

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEecCceEEcCEEEECCCCCcchh
Q 020312          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKV  292 (328)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~~g~~~~ad~vV~~~~~~~~~~  292 (328)
                      ..++..+++.++++|++++.+++|++|..+ ++.+++|.++++++.||.||+|++.+..++
T Consensus       137 ~~l~~~l~~~~~~~g~~~~~~~~v~~i~~~-~~~~~~v~~~~g~~~a~~vV~a~G~~~~~l  196 (337)
T TIGR02352       137 RALLKALEKALEKLGVEIIEHTEVQHIEIR-GEKVTAIVTPSGDVQADQVVLAAGAWAGEL  196 (337)
T ss_pred             HHHHHHHHHHHHHcCCEEEccceEEEEEee-CCEEEEEEcCCCEEECCEEEEcCChhhhhc
Confidence            679999999999999999999999999987 777888888666899999998888754443

This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.

>PRK06126 hypothetical protein; Provisional

Probab=98.45  E-value=2e-07  Score=87.75  Aligned_cols=35  Identities=26%  Similarity=0.337  Sum_probs=33.1

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEeccCCC
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~   38 (328)
                      ++||+|||||++||++|..|+++|++|+|+|+.+.
T Consensus         7 ~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~   41 (545)
T PRK06126          7 ETPVLIVGGGPVGLALALDLGRRGVDSILVERKDG   41 (545)
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence            58999999999999999999999999999999764

>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []

Probab=98.44  E-value=1.7e-07  Score=86.87  Aligned_cols=40  Identities=28%  Similarity=0.351  Sum_probs=34.1

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCccc
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~   44 (328)
                      .+|+|||||++||++|..|.+.|++|+++|+++.+||.-+
T Consensus         2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W~   41 (531)
T PF00743_consen    2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGLWR   41 (531)
T ss_dssp             -EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGGGC
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCccCe
Confidence            4799999999999999999999999999999999999654

Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....

>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=98.44  E-value=1.7e-07  Score=83.82  Aligned_cols=33  Identities=18%  Similarity=0.388  Sum_probs=31.5

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~   37 (328)
                      +||+|||||++|+++|..|++.|++|+|+|+.+
T Consensus         2 ~dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~~   34 (374)
T PRK06617          2 SNTVILGCGLSGMLTALSFAQKGIKTTIFESKS   34 (374)
T ss_pred             ccEEEECCCHHHHHHHHHHHcCCCeEEEecCCC
Confidence            699999999999999999999999999999864

>PLN02985 squalene monooxygenase

Probab=98.44  E-value=2.4e-07  Score=85.92  Aligned_cols=36  Identities=31%  Similarity=0.447  Sum_probs=33.3

Q ss_pred             CcccEEEECCChhHHHHHHhhhhCCCeEEEeccCCC
Q 020312            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (328)
Q Consensus         3 ~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~   38 (328)
                      .++||+|||||++|+++|+.|+++|++|+|+|+...
T Consensus        42 ~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~~   77 (514)
T PLN02985         42 GATDVIIVGAGVGGSALAYALAKDGRRVHVIERDLR   77 (514)
T ss_pred             CCceEEEECCCHHHHHHHHHHHHcCCeEEEEECcCC
Confidence            358999999999999999999999999999999753

>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6

Probab=98.44  E-value=1.9e-07  Score=85.33  Aligned_cols=33  Identities=36%  Similarity=0.561  Sum_probs=31.2

Q ss_pred             ccEEEECCChhHHHHHHhhhh----CCCeEEEeccCC
Q 020312            5 YDVIVLGTGLKECILSGLLSV----DGLKVLHMDRND   37 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~----~G~~V~vlE~~~   37 (328)
                      |||+|||||++|+++|+.|++    +|++|+|+|+++
T Consensus         1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~   37 (437)
T TIGR01989         1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVD   37 (437)
T ss_pred             CcEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCC
Confidence            699999999999999999999    899999999954

This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone

>PRK14727 putative mercuric reductase; Provisional

Probab=98.43  E-value=1.9e-07  Score=86.28  Aligned_cols=43  Identities=19%  Similarity=0.274  Sum_probs=39.8

Q ss_pred             CcccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCcccc
Q 020312            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSS   45 (328)
Q Consensus         3 ~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~s   45 (328)
                      .++|++|||||.+|++||..|+++|.+|+|+|+++.+||.|..
T Consensus        15 ~~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~~~GG~c~n   57 (479)
T PRK14727         15 LQLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGADVIGGCCVN   57 (479)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCcceeEecc
Confidence            3599999999999999999999999999999999899998754

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=98.43  E-value=6.9e-06  Score=74.14  Aligned_cols=54  Identities=22%  Similarity=0.174  Sum_probs=41.8

Q ss_pred             HHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe-cCceEEcCEEEECCCCCcc
Q 020312          234 LPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLPN  290 (328)
Q Consensus       234 l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~-~g~~~~ad~vV~~~~~~~~  290 (328)
                      +.+.+.+.+++.|++++++++|++|..+  +. +.+++ +++++.||.||++++..|+
T Consensus       188 ~~~~l~~~l~~~GV~i~~~~~V~~i~~~--~~-~~v~l~~g~~i~aD~Vv~a~G~~pn  242 (396)
T PRK09754        188 VQRYLLQRHQQAGVRILLNNAIEHVVDG--EK-VELTLQSGETLQADVVIYGIGISAN  242 (396)
T ss_pred             HHHHHHHHHHHCCCEEEeCCeeEEEEcC--CE-EEEEECCCCEEECCEEEECCCCChh
Confidence            4455667778899999999999999753  33 33555 7888999999998887765

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=98.42  E-value=2.8e-07  Score=84.39  Aligned_cols=40  Identities=23%  Similarity=0.227  Sum_probs=37.8

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCcc
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGES   43 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~   43 (328)
                      .+||+|||||++||+||+.|+++|++|+|+|+.+.+||..
T Consensus       133 ~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~GG~l  172 (449)
T TIGR01316       133 HKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKPGGVV  172 (449)
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcEe
Confidence            5799999999999999999999999999999999999864

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]

Probab=98.42  E-value=2.9e-07  Score=79.83  Aligned_cols=35  Identities=20%  Similarity=0.359  Sum_probs=32.5

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEeccCCC
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~   38 (328)
                      +-+|||||||++||++|..|+++|++|+|+|++..
T Consensus         2 ~~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~   36 (420)
T KOG2614|consen    2 EPKVVIVGGGIVGLATALALHRKGIDVVVLESRED   36 (420)
T ss_pred             CCcEEEECCcHHHHHHHHHHHHcCCeEEEEeeccc
Confidence            45899999999999999999999999999999854

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

Probab=98.41  E-value=2.4e-07  Score=92.09  Aligned_cols=41  Identities=20%  Similarity=0.142  Sum_probs=38.3

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCccc
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~   44 (328)
                      ..||+|||||++||+||++|+++|++|+|+|+.+.+||..+
T Consensus       430 ~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~GG~l~  470 (1006)
T PRK12775        430 LGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVGGVLQ  470 (1006)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCcceee
Confidence            47999999999999999999999999999999999999654

>PLN02507 glutathione reductase

Probab=98.41  E-value=2.8e-07  Score=85.39  Aligned_cols=56  Identities=21%  Similarity=0.187  Sum_probs=43.8

Q ss_pred             cHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe-cCceEEcCEEEECCCCCcc
Q 020312          233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLPN  290 (328)
Q Consensus       233 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~-~g~~~~ad~vV~~~~~~~~  290 (328)
                      .+.+.+.+.+++.|+++++++.|++|+.+ ++.+. ++. +++++.+|.|+++++..|+
T Consensus       245 ~~~~~l~~~l~~~GI~i~~~~~V~~i~~~-~~~~~-v~~~~g~~i~~D~vl~a~G~~pn  301 (499)
T PLN02507        245 EMRAVVARNLEGRGINLHPRTNLTQLTKT-EGGIK-VITDHGEEFVADVVLFATGRAPN  301 (499)
T ss_pred             HHHHHHHHHHHhCCCEEEeCCEEEEEEEe-CCeEE-EEECCCcEEEcCEEEEeecCCCC
Confidence            45666677788899999999999999876 44433 444 6778999999988877655

>PRK05868 hypothetical protein; Validated

Probab=98.40  E-value=2.9e-07  Score=82.24  Aligned_cols=34  Identities=21%  Similarity=0.254  Sum_probs=32.2

Q ss_pred             cEEEECCChhHHHHHHhhhhCCCeEEEeccCCCC
Q 020312            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY   39 (328)
Q Consensus         6 dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~   39 (328)
                      ||+|||||++||++|..|+++|++|+|+|+++.+
T Consensus         3 ~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~   36 (372)
T PRK05868          3 TVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGL   36 (372)
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Confidence            8999999999999999999999999999998654

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=98.40  E-value=8.8e-06  Score=74.66  Aligned_cols=57  Identities=21%  Similarity=0.176  Sum_probs=45.5

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEecCceEEcCEEEECCCCCcc
Q 020312          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPN  290 (328)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~~g~~~~ad~vV~~~~~~~~  290 (328)
                      ..+.+.+.+.+++.|++++++++|++|..  ++++..+.++++++.||.||++++..|+
T Consensus       191 ~~~~~~l~~~l~~~gI~v~~~~~v~~i~~--~~~~~~v~~~~~~i~~d~vi~a~G~~p~  247 (444)
T PRK09564        191 KEITDVMEEELRENGVELHLNEFVKSLIG--EDKVEGVVTDKGEYEADVVIVATGVKPN  247 (444)
T ss_pred             HHHHHHHHHHHHHCCCEEEcCCEEEEEec--CCcEEEEEeCCCEEEcCEEEECcCCCcC
Confidence            34667777888899999999999999964  3455666677778999999998887664

>PLN02463 lycopene beta cyclase

Probab=98.40  E-value=2.8e-07  Score=83.70  Aligned_cols=35  Identities=26%  Similarity=0.363  Sum_probs=32.9

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEeccCCC
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~   38 (328)
                      .+||+|||||++|+++|+.|+++|++|+|+|++..
T Consensus        28 ~~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~   62 (447)
T PLN02463         28 VVDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPL   62 (447)
T ss_pred             CceEEEECCCHHHHHHHHHHHHCCCeEEEeccCcc
Confidence            58999999999999999999999999999999754

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=98.40  E-value=3.1e-07  Score=87.98  Aligned_cols=41  Identities=24%  Similarity=0.390  Sum_probs=38.2

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCccc
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~   44 (328)
                      ..+|+|||||++||+||+.|++.|++|+|+|+.+.+||...
T Consensus       327 ~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~  367 (654)
T PRK12769        327 DKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLT  367 (654)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceee
Confidence            47999999999999999999999999999999999999653

>PRK08294 phenol 2-monooxygenase; Provisional

Probab=98.39  E-value=3e-07  Score=87.40  Aligned_cols=38  Identities=24%  Similarity=0.383  Sum_probs=34.8

Q ss_pred             CCCcccEEEECCChhHHHHHHhhhh-CCCeEEEeccCCC
Q 020312            1 MDEEYDVIVLGTGLKECILSGLLSV-DGLKVLHMDRNDY   38 (328)
Q Consensus         1 ~~~~~dvvIvG~G~aGl~aA~~L~~-~G~~V~vlE~~~~   38 (328)
                      |++++||+|||||++||++|..|++ .|.+|+|+|+.+.
T Consensus        29 ~~~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~   67 (634)
T PRK08294         29 LPDEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPG   67 (634)
T ss_pred             CCCCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCC
Confidence            5668999999999999999999999 5999999999864

>TIGR01789 lycopene_cycl lycopene cyclase

Probab=98.39  E-value=3.1e-07  Score=81.77  Aligned_cols=37  Identities=22%  Similarity=0.437  Sum_probs=34.5

Q ss_pred             cEEEECCChhHHHHHHhhhhC--CCeEEEeccCCCCCCc
Q 020312            6 DVIVLGTGLKECILSGLLSVD--GLKVLHMDRNDYYGGE   42 (328)
Q Consensus         6 dvvIvG~G~aGl~aA~~L~~~--G~~V~vlE~~~~~GG~   42 (328)
                      ||+|||||++||++|+.|+++  |++|+|+|+++..||.
T Consensus         1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~   39 (370)
T TIGR01789         1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGN   39 (370)
T ss_pred             CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCc
Confidence            899999999999999999987  9999999999887763

This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.

>PTZ00367 squalene epoxidase; Provisional

Probab=98.38  E-value=3.1e-07  Score=85.72  Aligned_cols=35  Identities=37%  Similarity=0.597  Sum_probs=32.9

Q ss_pred             CcccEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (328)
Q Consensus         3 ~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~   37 (328)
                      .++||+|||||++|+++|+.|+++|++|+|+|++.
T Consensus        32 ~~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~   66 (567)
T PTZ00367         32 YDYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDL   66 (567)
T ss_pred             cCccEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence            35899999999999999999999999999999975

>PRK10262 thioredoxin reductase; Provisional

Probab=98.38  E-value=3.3e-07  Score=80.31  Aligned_cols=42  Identities=14%  Similarity=0.244  Sum_probs=36.6

Q ss_pred             CcccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCcccc
Q 020312            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSS   45 (328)
Q Consensus         3 ~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~s   45 (328)
                      ..+||+|||||++||+||..|+++|++|+++|+. ..||.+..
T Consensus         5 ~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~-~~gg~~~~   46 (321)
T PRK10262          5 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGM-EKGGQLTT   46 (321)
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEee-cCCCceec
Confidence            3589999999999999999999999999999964 67776543

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=98.38  E-value=3.5e-07  Score=84.31  Aligned_cols=58  Identities=21%  Similarity=0.234  Sum_probs=45.6

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe-cCceEEcCEEEECCCCCcc
Q 020312          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLPN  290 (328)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~-~g~~~~ad~vV~~~~~~~~  290 (328)
                      ..+.+.+.+.+++.|+++++++.|++|..+ ++....+++ +++++.+|.||++++..|+
T Consensus       231 ~~~~~~l~~~L~~~GI~i~~~~~v~~i~~~-~~~~~~v~~~~g~~i~~D~vl~a~G~~Pn  289 (486)
T TIGR01423       231 STLRKELTKQLRANGINIMTNENPAKVTLN-ADGSKHVTFESGKTLDVDVVMMAIGRVPR  289 (486)
T ss_pred             HHHHHHHHHHHHHcCCEEEcCCEEEEEEEc-CCceEEEEEcCCCEEEcCEEEEeeCCCcC
Confidence            456778888899999999999999999876 344344454 6778999999988877655

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>PRK11445 putative oxidoreductase; Provisional

Probab=98.37  E-value=3.2e-07  Score=81.33  Aligned_cols=34  Identities=32%  Similarity=0.583  Sum_probs=32.0

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY   39 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~   39 (328)
                      +||+|||||++|+++|..|+++ ++|+|+|+.+..
T Consensus         2 ~dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~~   35 (351)
T PRK11445          2 YDVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQC   35 (351)
T ss_pred             ceEEEECCCHHHHHHHHHHhcc-CCEEEEECCCcc
Confidence            7999999999999999999999 999999998754

>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase

Probab=98.37  E-value=3.6e-07  Score=86.09  Aligned_cols=35  Identities=20%  Similarity=0.364  Sum_probs=33.0

Q ss_pred             CcccEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (328)
Q Consensus         3 ~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~   37 (328)
                      +..+|+|||||++||++|..|+++|++|+|+|+..
T Consensus        80 ~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~  114 (668)
T PLN02927         80 KKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDL  114 (668)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccc
Confidence            45899999999999999999999999999999975

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=98.35  E-value=4.8e-07  Score=83.36  Aligned_cols=40  Identities=30%  Similarity=0.357  Sum_probs=37.7

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCcc
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGES   43 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~   43 (328)
                      ..+|+|||||++||+||..|+++|++|+|+|+.+.+||..
T Consensus       143 ~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l  182 (471)
T PRK12810        143 GKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGLL  182 (471)
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCcee
Confidence            4799999999999999999999999999999999999864

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=98.35  E-value=4.7e-07  Score=88.20  Aligned_cols=41  Identities=24%  Similarity=0.305  Sum_probs=38.1

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCccc
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~   44 (328)
                      ..||+|||||++||+||++|+++|++|+|+|+.+.+||...
T Consensus       431 ~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~  471 (752)
T PRK12778        431 GKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIGGVLK  471 (752)
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCeee
Confidence            47999999999999999999999999999999999998753

>TIGR03219 salicylate_mono salicylate 1-monooxygenase

Probab=98.35  E-value=4.3e-07  Score=82.48  Aligned_cols=36  Identities=22%  Similarity=0.361  Sum_probs=32.6

Q ss_pred             ccEEEECCChhHHHHHHhhhhCC-CeEEEeccCCCCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDG-LKVLHMDRNDYYG   40 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G-~~V~vlE~~~~~G   40 (328)
                      .+|+|||||++||++|+.|+++| .+|+|+|+++.++
T Consensus         1 ~~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~~   37 (414)
T TIGR03219         1 LRVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAFG   37 (414)
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcCC
Confidence            37999999999999999999998 5999999987654

Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.

>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form

Probab=98.35  E-value=4.3e-07  Score=90.65  Aligned_cols=42  Identities=26%  Similarity=0.331  Sum_probs=39.3

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCcccc
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSS   45 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~s   45 (328)
                      .+||+|||||++||+||.+|+++|++|+|+|+++.+||....
T Consensus       163 ~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~GG~~~~  204 (985)
T TIGR01372       163 HCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGGSLLS  204 (985)
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCeeec
Confidence            589999999999999999999999999999999999997654

This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>PLN02546 glutathione reductase

Probab=98.34  E-value=5.1e-07  Score=84.34  Aligned_cols=43  Identities=19%  Similarity=0.186  Sum_probs=37.6

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEecc---------CCCCCCccccc
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDR---------NDYYGGESSSL   46 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~---------~~~~GG~~~s~   46 (328)
                      +|||+|||||.+|+.||..|+++|++|+|+|+         ...+||.|-..
T Consensus        79 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~~~~~~~~~~~~GGtC~n~  130 (558)
T PLN02546         79 DFDLFTIGAGSGGVRASRFASNFGASAAVCELPFATISSDTLGGVGGTCVLR  130 (558)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccccccccccCCCccCcccCc
Confidence            58999999999999999999999999999996         25678876443

>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed

Probab=98.33  E-value=5.6e-07  Score=79.93  Aligned_cols=35  Identities=23%  Similarity=0.184  Sum_probs=32.6

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY   39 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~   39 (328)
                      .||+|||||++|+.||+.|+++|++|+|+|+++..
T Consensus         3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~   37 (436)
T PRK05335          3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVK   37 (436)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcc
Confidence            49999999999999999999999999999987654

>PTZ00188 adrenodoxin reductase; Provisional

Probab=98.33  E-value=5.8e-07  Score=81.15  Aligned_cols=43  Identities=16%  Similarity=0.072  Sum_probs=37.9

Q ss_pred             cccEEEECCChhHHHHHHhhh-hCCCeEEEeccCCCCCCccccc
Q 020312            4 EYDVIVLGTGLKECILSGLLS-VDGLKVLHMDRNDYYGGESSSL   46 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~-~~G~~V~vlE~~~~~GG~~~s~   46 (328)
                      ...|+|||||+|||.||.+|+ +.|++|+|+|+.+.+||..+..
T Consensus        39 ~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgGLvR~G   82 (506)
T PTZ00188         39 PFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYGLIRYG   82 (506)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCccEEEEe
Confidence            468999999999999999764 6799999999999999987643

>COG4716 Myosin-crossreactive antigen [Function unknown]

Probab=98.33  E-value=1.9e-05  Score=67.75  Aligned_cols=41  Identities=20%  Similarity=0.312  Sum_probs=35.4

Q ss_pred             ccEEEECCChhHHHHHHhhhhC----CCeEEEeccCCCCCCcccc
Q 020312            5 YDVIVLGTGLKECILSGLLSVD----GLKVLHMDRNDYYGGESSS   45 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~----G~~V~vlE~~~~~GG~~~s   45 (328)
                      ..+-|||+|++||++|..|.+.    |.++-|+|.-...||...-
T Consensus        23 KsaY~vG~GlAsLA~AvfLIRDg~m~G~~IHilEelpl~GGSlDG   67 (587)
T COG4716          23 KSAYIVGGGLASLAAAVFLIRDGQMDGKRIHILEELPLAGGSLDG   67 (587)
T ss_pred             ceeEEEccchHhhhheeEEEeccccCCceeEeeecCcccCCCCCC
Confidence            4567999999999999999986    5799999999999996533

>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]

Probab=98.33  E-value=1.3e-05  Score=71.28  Aligned_cols=63  Identities=21%  Similarity=0.202  Sum_probs=46.3

Q ss_pred             eEEeecCCcC-cHHHHHHHHHHH-cCcEEEcCcceeEEEecCCC-cEEEEEe--c-C--ceEEcCEEEECCC
Q 020312          223 PYIYPLYGLG-ELPQAFARLSAV-YGGTYMLNKPECKVEFDEEG-KVVGVTS--E-G--ETAKCKKVVCDPS  286 (328)
Q Consensus       223 ~~~~~~gG~~-~l~~~l~~~~~~-~G~~i~~~~~V~~I~~~~~~-~v~~v~~--~-g--~~~~ad~vV~~~~  286 (328)
                      ..++..+..+ .+..+|.+.+++ .+++++.++.+.+|..+ ++ .+.|+.+  . +  ..+.|+.||++.+
T Consensus       123 RIlH~~~~TG~~I~~~L~~~v~~~p~I~v~e~~~a~~li~~-~~~~~~Gv~~~~~~~~~~~~~a~~vVLATG  193 (518)
T COG0029         123 RILHAADATGKEIMTALLKKVRNRPNITVLEGAEALDLIIE-DGIGVAGVLVLNRNGELGTFRAKAVVLATG  193 (518)
T ss_pred             eEEEecCCccHHHHHHHHHHHhcCCCcEEEecchhhhhhhc-CCceEeEEEEecCCCeEEEEecCeEEEecC
Confidence            3455555544 488888887776 58999999999999998 66 5558876  2 2  4688999886543

>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated

Probab=98.32  E-value=6e-07  Score=86.92  Aligned_cols=39  Identities=26%  Similarity=0.223  Sum_probs=35.6

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCc
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGE   42 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~   42 (328)
                      ..+|+|||||+|||+||++|++.|++|+|+|+.+..|+.
T Consensus       383 gKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~i~gl~  421 (1028)
T PRK06567        383 NYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLKITLLP  421 (1028)
T ss_pred             CCeEEEECcCHHHHHHHHHHHhCCCeEEEEccccccccc
Confidence            479999999999999999999999999999998776654

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=98.31  E-value=7.3e-07  Score=81.95  Aligned_cols=40  Identities=25%  Similarity=0.287  Sum_probs=37.6

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCcc
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGES   43 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~   43 (328)
                      ..+|+|||||++||++|+.|+++|++|+|+|+.+.+||..
T Consensus       140 ~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~gG~l  179 (457)
T PRK11749        140 GKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGGLL  179 (457)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCcEe
Confidence            4799999999999999999999999999999999998864

>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase

Probab=98.30  E-value=6.6e-07  Score=79.95  Aligned_cols=37  Identities=22%  Similarity=0.154  Sum_probs=33.7

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG   41 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG   41 (328)
                      .||+|||||++|+.||+.|+++|++|+|+|+++..+-
T Consensus         1 ~~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~~~   37 (433)
T TIGR00137         1 TPVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEKLT   37 (433)
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCcEEEEeccccccC
Confidence            4899999999999999999999999999998776544

This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=98.30  E-value=6.8e-07  Score=83.39  Aligned_cols=39  Identities=23%  Similarity=0.410  Sum_probs=35.6

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCccc
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~   44 (328)
                      .+||+|||||++||+||.+|++.|++|+|+|.  .+||.+.
T Consensus       211 ~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~--~~GG~~~  249 (517)
T PRK15317        211 PYDVLVVGGGPAGAAAAIYAARKGIRTGIVAE--RFGGQVL  249 (517)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEec--CCCCeee
Confidence            58999999999999999999999999999986  3888764

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=98.29  E-value=7.9e-07  Score=81.73  Aligned_cols=41  Identities=27%  Similarity=0.407  Sum_probs=38.3

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCccc
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~   44 (328)
                      ..+|+|||||++||+||++|++.|++|+|+|+.+.+||..+
T Consensus       141 ~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~  181 (467)
T TIGR01318       141 GKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLT  181 (467)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceee
Confidence            47999999999999999999999999999999999999653

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]

Probab=98.28  E-value=2.8e-05  Score=71.57  Aligned_cols=37  Identities=32%  Similarity=0.540  Sum_probs=32.9

Q ss_pred             CcccEEEECCChhHHHHHHhhhhC-CCeEEEeccCCCC
Q 020312            3 EEYDVIVLGTGLKECILSGLLSVD-GLKVLHMDRNDYY   39 (328)
Q Consensus         3 ~~~dvvIvG~G~aGl~aA~~L~~~-G~~V~vlE~~~~~   39 (328)
                      ..||.||||||-||++.|..|++. -++|+|||++..+
T Consensus        56 ~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~   93 (623)
T KOG1238|consen   56 SSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDP   93 (623)
T ss_pred             cCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCC
Confidence            469999999999999999999987 4899999996544

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=98.28  E-value=8.4e-07  Score=84.73  Aligned_cols=41  Identities=27%  Similarity=0.346  Sum_probs=38.4

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCccc
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~   44 (328)
                      ..+|+|||||++||++|+.|++.|++|+|+|+.+.+||..+
T Consensus       310 ~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~  350 (639)
T PRK12809        310 SEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLT  350 (639)
T ss_pred             CCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeee
Confidence            57999999999999999999999999999999999998753

>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins

Probab=98.28  E-value=7.8e-07  Score=79.52  Aligned_cols=34  Identities=35%  Similarity=0.449  Sum_probs=32.1

Q ss_pred             cEEEECCChhHHHHHHhh--hhCCCeEEEeccCCCC
Q 020312            6 DVIVLGTGLKECILSGLL--SVDGLKVLHMDRNDYY   39 (328)
Q Consensus         6 dvvIvG~G~aGl~aA~~L--~~~G~~V~vlE~~~~~   39 (328)
                      ||||||||+|||++|++|  ++.|.+|+|||++...
T Consensus         1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~   36 (374)
T PF05834_consen    1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKP   36 (374)
T ss_pred             CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccc
Confidence            899999999999999999  8889999999998766

Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=98.27  E-value=8.7e-07  Score=84.71  Aligned_cols=41  Identities=24%  Similarity=0.275  Sum_probs=38.2

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCccc
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~   44 (328)
                      ..+|+|||||++||+||+.|++.|++|+|+|+.+.+||...
T Consensus       193 ~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~  233 (652)
T PRK12814        193 GKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMR  233 (652)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCceee
Confidence            36999999999999999999999999999999999999653

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=98.27  E-value=9.5e-07  Score=82.34  Aligned_cols=39  Identities=26%  Similarity=0.424  Sum_probs=35.6

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCccc
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~   44 (328)
                      .+||+|||||++|++||.+|++.|++|+|+|.  ++||.+.
T Consensus       212 ~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~--~~GG~~~  250 (515)
T TIGR03140       212 PYDVLVVGGGPAGAAAAIYAARKGLRTAMVAE--RIGGQVK  250 (515)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEec--CCCCccc
Confidence            48999999999999999999999999999975  6888764

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=98.26  E-value=9.2e-07  Score=83.85  Aligned_cols=42  Identities=31%  Similarity=0.436  Sum_probs=37.8

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEeccC-CCCCCcccc
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRN-DYYGGESSS   45 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~-~~~GG~~~s   45 (328)
                      +|||+|||+|.+|..||..+++.|.+|+|+|+. +.+||.|-.
T Consensus       116 ~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~~~~lGGtCvn  158 (659)
T PTZ00153        116 EYDVGIIGCGVGGHAAAINAMERGLKVIIFTGDDDSIGGTCVN  158 (659)
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCccccceeE
Confidence            689999999999999999999999999999985 468887643

>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]

Probab=98.24  E-value=1.1e-06  Score=81.75  Aligned_cols=44  Identities=25%  Similarity=0.283  Sum_probs=39.2

Q ss_pred             CCcccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCcccc
Q 020312            2 DEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSS   45 (328)
Q Consensus         2 ~~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~s   45 (328)
                      ..++||+|||||.|||.||..++++|.+|+|+||....+|.+..
T Consensus         4 ~~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~rg~t~~   47 (562)
T COG1053           4 IHEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKRGHTVA   47 (562)
T ss_pred             cccCCEEEECCcHHHHHHHHHHHhcCCcEEEEEccccCCCchhh
Confidence            45799999999999999999999999999999999888765433

>PRK06996 hypothetical protein; Provisional

Probab=98.23  E-value=1.3e-06  Score=78.83  Aligned_cols=36  Identities=22%  Similarity=0.470  Sum_probs=32.3

Q ss_pred             CcccEEEECCChhHHHHHHhhhhCC----CeEEEeccCCC
Q 020312            3 EEYDVIVLGTGLKECILSGLLSVDG----LKVLHMDRNDY   38 (328)
Q Consensus         3 ~~~dvvIvG~G~aGl~aA~~L~~~G----~~V~vlE~~~~   38 (328)
                      +++||+|||||++|+++|+.|+++|    .+|+|+|+.+.
T Consensus        10 ~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~   49 (398)
T PRK06996         10 PDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREP   49 (398)
T ss_pred             CCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCC
Confidence            4689999999999999999999987    47999999764

>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=98.21  E-value=1.5e-06  Score=70.57  Aligned_cols=33  Identities=27%  Similarity=0.359  Sum_probs=30.7

Q ss_pred             cEEEECCChhHHHHHHhhhhCCCeEEEeccCCC
Q 020312            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (328)
Q Consensus         6 dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~   38 (328)
                      ||+|||||++|++||.+|++.|.+|+|+|+.+.
T Consensus         1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~   33 (201)
T PF07992_consen    1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPG   33 (201)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSH
T ss_pred             CEEEEecHHHHHHHHHHHhcCCCeEEEEecccc
Confidence            799999999999999999999999999987553

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....

>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]

Probab=98.18  E-value=1.4e-06  Score=78.87  Aligned_cols=42  Identities=26%  Similarity=0.192  Sum_probs=39.2

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCccccc
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSL   46 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~s~   46 (328)
                      .+|+|||||++||+||+.|+++|++|+|+|+.+.+||.....
T Consensus       124 ~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGll~yG  165 (457)
T COG0493         124 KKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLLYG  165 (457)
T ss_pred             CEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCceeEEec
Confidence            689999999999999999999999999999999999986543

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=98.18  E-value=1.8e-06  Score=79.75  Aligned_cols=56  Identities=18%  Similarity=0.036  Sum_probs=42.1

Q ss_pred             cHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe-cC---ceEEcCEEEECCCCCcc
Q 020312          233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EG---ETAKCKKVVCDPSYLPN  290 (328)
Q Consensus       233 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~-~g---~~~~ad~vV~~~~~~~~  290 (328)
                      .+.+.+.+.+++.|+++++++.+++|... ++.+. ++. ++   +++.+|.||++.+..|+
T Consensus       221 ~~~~~l~~~L~~~gV~i~~~~~v~~v~~~-~~~~~-v~~~~~~~~~~i~~D~vl~a~G~~pn  280 (484)
T TIGR01438       221 DCANKVGEHMEEHGVKFKRQFVPIKVEQI-EAKVK-VTFTDSTNGIEEEYDTVLLAIGRDAC  280 (484)
T ss_pred             HHHHHHHHHHHHcCCEEEeCceEEEEEEc-CCeEE-EEEecCCcceEEEeCEEEEEecCCcC
Confidence            45667777888999999999999999876 44432 333 33   47999999988777654

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit

Probab=98.17  E-value=2.1e-06  Score=79.37  Aligned_cols=40  Identities=28%  Similarity=0.336  Sum_probs=37.6

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCccc
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~   44 (328)
                      .+|+|||||++|++||.+|+++|++|+|+|+.+++||...
T Consensus       144 ~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~gG~l~  183 (485)
T TIGR01317       144 KKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCGGLLM  183 (485)
T ss_pred             CEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCCCceee
Confidence            6999999999999999999999999999999999998653

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=98.15  E-value=3.9e-06  Score=57.16  Aligned_cols=35  Identities=29%  Similarity=0.357  Sum_probs=33.4

Q ss_pred             cEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCC
Q 020312            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYG   40 (328)
Q Consensus         6 dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~G   40 (328)
                      +|+|||||..|+-+|..|++.|.+|+|+|+++.+.
T Consensus         1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~   35 (80)
T PF00070_consen    1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLL   35 (80)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhh
Confidence            48999999999999999999999999999999887

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=98.13  E-value=3.3e-06  Score=74.98  Aligned_cols=41  Identities=24%  Similarity=0.275  Sum_probs=38.1

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCccc
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~   44 (328)
                      ..+|+|||||.+|+++|..|++.|++|+|+|+.+.+||...
T Consensus        18 ~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~   58 (352)
T PRK12770         18 GKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPGGLML   58 (352)
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceee
Confidence            47999999999999999999999999999999999998653

>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]

Probab=98.12  E-value=2.7e-06  Score=71.58  Aligned_cols=56  Identities=18%  Similarity=0.269  Sum_probs=45.9

Q ss_pred             cHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe-cCc--eEEcCEEE-ECCCCCc
Q 020312          233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGE--TAKCKKVV-CDPSYLP  289 (328)
Q Consensus       233 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~-~g~--~~~ad~vV-~~~~~~~  289 (328)
                      .+-+.|.+..++.|+.+..+-+|.+.... +++|+.|-+ +..  .++||.+| ++.++++
T Consensus       259 Rl~~~L~~~f~~~Gg~~m~Gd~V~~a~~~-~~~v~~i~trn~~diP~~a~~~VLAsGsffs  318 (421)
T COG3075         259 RLHNQLQRQFEQLGGLWMPGDEVKKATCK-GGRVTEIYTRNHADIPLRADFYVLASGSFFS  318 (421)
T ss_pred             hHHHHHHHHHHHcCceEecCCceeeeeee-CCeEEEEEecccccCCCChhHeeeecccccc
Confidence            46788888899999999999999999998 999998887 554  37888865 5677754

>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]

Probab=98.10  E-value=2.6e-06  Score=81.92  Aligned_cols=40  Identities=25%  Similarity=0.318  Sum_probs=38.0

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCccc
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~   44 (328)
                      ..|+|||+|++||.||-.|-+.||-|+|+||++++||...
T Consensus      1786 ~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll~ 1825 (2142)
T KOG0399|consen 1786 KRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLM 1825 (2142)
T ss_pred             cEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCceee
Confidence            6899999999999999999999999999999999999754

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=98.09  E-value=0.00015  Score=71.33  Aligned_cols=58  Identities=10%  Similarity=0.055  Sum_probs=45.2

Q ss_pred             HHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe-cCceEEcCEEEECCCCCcch
Q 020312          234 LPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLPNK  291 (328)
Q Consensus       234 l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~-~g~~~~ad~vV~~~~~~~~~  291 (328)
                      ..+.+.+.++++|+++++++.|++|..++++....+.. +++++.+|.||++++..|+.
T Consensus       189 ~~~~l~~~L~~~GV~v~~~~~v~~I~~~~~~~~~~v~~~dG~~i~~D~Vv~A~G~rPn~  247 (847)
T PRK14989        189 GGEQLRRKIESMGVRVHTSKNTLEIVQEGVEARKTMRFADGSELEVDFIVFSTGIRPQD  247 (847)
T ss_pred             HHHHHHHHHHHCCCEEEcCCeEEEEEecCCCceEEEEECCCCEEEcCEEEECCCcccCc
Confidence            44566677889999999999999997642244455555 88899999999999887763

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=98.08  E-value=4.2e-06  Score=78.99  Aligned_cols=40  Identities=23%  Similarity=0.160  Sum_probs=37.5

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCcc
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGES   43 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~   43 (328)
                      ..+|+|||+|++||++|+.|++.|++|+|+|+.+.+||..
T Consensus       137 g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l  176 (564)
T PRK12771        137 GKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMM  176 (564)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCee
Confidence            3689999999999999999999999999999999999864

>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed

Probab=98.06  E-value=3.7e-06  Score=81.97  Aligned_cols=34  Identities=18%  Similarity=0.272  Sum_probs=31.9

Q ss_pred             ccEEEECCChhHHHHHHhhhhC--CCeEEEeccCCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVD--GLKVLHMDRNDY   38 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~--G~~V~vlE~~~~   38 (328)
                      ++|+|||||++||+||+.|+++  |++|+|+|++..
T Consensus         1 m~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~   36 (765)
T PRK08255          1 MRIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRP   36 (765)
T ss_pred             CeEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCC
Confidence            4799999999999999999998  899999999875

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=98.06  E-value=4.7e-06  Score=76.65  Aligned_cols=56  Identities=9%  Similarity=0.046  Sum_probs=42.1

Q ss_pred             cHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEecC--ceEEcCEEEECCCCCcc
Q 020312          233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEG--ETAKCKKVVCDPSYLPN  290 (328)
Q Consensus       233 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~~g--~~~~ad~vV~~~~~~~~  290 (328)
                      .+.+.+.+.+++.|+++++++.|++|..+ ++. +.++.++  +++.+|.||++++..|+
T Consensus       212 e~~~~l~~~L~~~GI~i~~~~~V~~i~~~-~~~-v~~~~~g~~~~i~~D~vivA~G~~p~  269 (458)
T PRK06912        212 DIAHILREKLENDGVKIFTGAALKGLNSY-KKQ-ALFEYEGSIQEVNAEFVLVSVGRKPR  269 (458)
T ss_pred             HHHHHHHHHHHHCCCEEEECCEEEEEEEc-CCE-EEEEECCceEEEEeCEEEEecCCccC
Confidence            46677778888899999999999999865 443 3344444  36999999988777654

>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]

Probab=98.05  E-value=1.7e-06  Score=68.12  Aligned_cols=42  Identities=24%  Similarity=0.320  Sum_probs=37.0

Q ss_pred             cccEEEECCChhHHHHHHhhhhC--CCeEEEeccCCCCCCcccc
Q 020312            4 EYDVIVLGTGLKECILSGLLSVD--GLKVLHMDRNDYYGGESSS   45 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~--G~~V~vlE~~~~~GG~~~s   45 (328)
                      +.||+|||+|-+||+|||+.+++  ..+|.|+|++-.+||.++-
T Consensus        76 esDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPGGGaWL  119 (328)
T KOG2960|consen   76 ESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPGGGAWL  119 (328)
T ss_pred             ccceEEECCCccccceeeeeeccCCCceEEEEEeeecCCCcccc
Confidence            46999999999999999999954  5899999999999986543

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=98.05  E-value=5.1e-06  Score=76.55  Aligned_cols=56  Identities=23%  Similarity=0.245  Sum_probs=43.8

Q ss_pred             cHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe-cCceEEcCEEEECCCCCcc
Q 020312          233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLPN  290 (328)
Q Consensus       233 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~-~g~~~~ad~vV~~~~~~~~  290 (328)
                      .+.+.+.+.+++.|++++++++|++|+.+ ++.+. +.. +++++.+|.||++++..|+
T Consensus       219 ~~~~~l~~~L~~~gV~i~~~~~v~~v~~~-~~~~~-v~~~~g~~l~~D~vl~a~G~~pn  275 (466)
T PRK07845        219 DAAEVLEEVFARRGMTVLKRSRAESVERT-GDGVV-VTLTDGRTVEGSHALMAVGSVPN  275 (466)
T ss_pred             HHHHHHHHHHHHCCcEEEcCCEEEEEEEe-CCEEE-EEECCCcEEEecEEEEeecCCcC
Confidence            35666777788899999999999999876 55543 444 7788999999988777655

>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit

Probab=98.02  E-value=7.8e-05  Score=69.72  Aligned_cols=61  Identities=16%  Similarity=0.155  Sum_probs=50.8

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe----cC--ceEEcCEEEECCCCCcchhh
Q 020312          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS----EG--ETAKCKKVVCDPSYLPNKVI  293 (328)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~----~g--~~~~ad~vV~~~~~~~~~~~  293 (328)
                      ..++.++++.++++|++++++++|++|+.+ ++++++|++    ++  ..+.|+.||.+++.+..++.
T Consensus       128 ~~l~~al~~~A~~~Ga~i~~~t~V~~i~~~-~~~v~gv~v~~~~~g~~~~i~a~~VVnAaG~wa~~l~  194 (516)
T TIGR03377       128 FRLVAANVLDAQEHGARIFTYTKVTGLIRE-GGRVTGVKVEDHKTGEEERIEAQVVINAAGIWAGRIA  194 (516)
T ss_pred             HHHHHHHHHHHHHcCCEEEcCcEEEEEEEE-CCEEEEEEEEEcCCCcEEEEEcCEEEECCCcchHHHH
Confidence            568889999999999999999999999987 788777664    24  26899999999988776654

Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>PRK13984 putative oxidoreductase; Provisional

Probab=98.00  E-value=7.1e-06  Score=78.17  Aligned_cols=40  Identities=20%  Similarity=0.228  Sum_probs=37.6

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCcc
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGES   43 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~   43 (328)
                      ..+|+|||+|.+|+++|..|+++|++|+|+|+.+.+||..
T Consensus       283 ~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~gG~~  322 (604)
T PRK13984        283 NKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGGVM  322 (604)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceE
Confidence            4789999999999999999999999999999999999864

>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]

Probab=97.98  E-value=7.1e-06  Score=70.46  Aligned_cols=44  Identities=25%  Similarity=0.437  Sum_probs=40.4

Q ss_pred             CcccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCccccc
Q 020312            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSL   46 (328)
Q Consensus         3 ~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~s~   46 (328)
                      .++|++|||+|++|-.||...+|.|.+..++|++..+||.|-..
T Consensus        38 ~d~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~~LGGTcLnv   81 (506)
T KOG1335|consen   38 NDYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGTLGGTCLNV   81 (506)
T ss_pred             ccCCEEEECCCCchHHHHHHHHHhcceeEEEeccCccCceeeec
Confidence            36999999999999999999999999999999999999977443

>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.97  E-value=8.3e-05  Score=66.36  Aligned_cols=39  Identities=13%  Similarity=0.252  Sum_probs=33.1

Q ss_pred             ccEEEECCChhHHHHHHhhhhCC---CeEEEeccCCCCCCcc
Q 020312            5 YDVIVLGTGLKECILSGLLSVDG---LKVLHMDRNDYYGGES   43 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G---~~V~vlE~~~~~GG~~   43 (328)
                      ++|+|||||.+|+.+|.+|.+.-   ..|.|+|.....|+.+
T Consensus         2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~Gi   43 (474)
T COG4529           2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGI   43 (474)
T ss_pred             ceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCCCc
Confidence            58999999999999999999752   2299999998887643

>PRK07846 mycothione reductase; Reviewed

Probab=97.86  E-value=1.6e-05  Score=72.88  Aligned_cols=54  Identities=19%  Similarity=0.241  Sum_probs=38.8

Q ss_pred             HHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe-cCceEEcCEEEECCCCCcc
Q 020312          234 LPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLPN  290 (328)
Q Consensus       234 l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~-~g~~~~ad~vV~~~~~~~~  290 (328)
                      +.+.+.+ +.+.|++++++++|++|+.+ ++.+ .+++ +++++.+|.||++.+..|+
T Consensus       209 ~~~~l~~-l~~~~v~i~~~~~v~~i~~~-~~~v-~v~~~~g~~i~~D~vl~a~G~~pn  263 (451)
T PRK07846        209 ISERFTE-LASKRWDVRLGRNVVGVSQD-GSGV-TLRLDDGSTVEADVLLVATGRVPN  263 (451)
T ss_pred             HHHHHHH-HHhcCeEEEeCCEEEEEEEc-CCEE-EEEECCCcEeecCEEEEEECCccC
Confidence            4444443 33568999999999999876 5443 3444 6778999999988777554

>KOG2853 consensus Possible oxidoreductase [General function prediction only]

Probab=97.86  E-value=1.3e-05  Score=67.90  Aligned_cols=36  Identities=28%  Similarity=0.409  Sum_probs=32.2

Q ss_pred             CcccEEEECCChhHHHHHHhhhhC----CCeEEEeccCCC
Q 020312            3 EEYDVIVLGTGLKECILSGLLSVD----GLKVLHMDRNDY   38 (328)
Q Consensus         3 ~~~dvvIvG~G~aGl~aA~~L~~~----G~~V~vlE~~~~   38 (328)
                      .++||+|||||.+|+|+|+-|+++    |.+|+|+|+++.
T Consensus        85 ~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddt  124 (509)
T KOG2853|consen   85 YHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDT  124 (509)
T ss_pred             cccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCc
Confidence            468999999999999999999864    799999999874

>TIGR03452 mycothione_red mycothione reductase

Probab=97.83  E-value=1.9e-05  Score=72.53  Aligned_cols=54  Identities=22%  Similarity=0.294  Sum_probs=39.3

Q ss_pred             HHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe-cCceEEcCEEEECCCCCcc
Q 020312          234 LPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLPN  290 (328)
Q Consensus       234 l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~-~g~~~~ad~vV~~~~~~~~  290 (328)
                      +.+.+.+. .+.|+++++++.|++|..+ ++.+ .++. +++++.+|.|+++++..|+
T Consensus       212 ~~~~l~~~-~~~gI~i~~~~~V~~i~~~-~~~v-~v~~~~g~~i~~D~vl~a~G~~pn  266 (452)
T TIGR03452       212 ISDRFTEI-AKKKWDIRLGRNVTAVEQD-GDGV-TLTLDDGSTVTADVLLVATGRVPN  266 (452)
T ss_pred             HHHHHHHH-HhcCCEEEeCCEEEEEEEc-CCeE-EEEEcCCCEEEcCEEEEeeccCcC
Confidence            44444443 3468999999999999876 5543 3444 6778999999988887665

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=97.62  E-value=0.00072  Score=62.42  Aligned_cols=47  Identities=23%  Similarity=0.130  Sum_probs=36.2

Q ss_pred             HHHcCcEEEcCcceeEEEecCCCcEEEEEe-cCceEEcCEEEECCCCCcc
Q 020312          242 SAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLPN  290 (328)
Q Consensus       242 ~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~-~g~~~~ad~vV~~~~~~~~  290 (328)
                      +++.|++++++++|++|..+ ++.+. +++ +++++++|.||++.+..|+
T Consensus       226 l~~~gI~v~~~~~v~~i~~~-~~~~~-v~~~~g~~i~~D~vi~a~G~~p~  273 (461)
T PRK05249        226 LRDSGVTIRHNEEVEKVEGG-DDGVI-VHLKSGKKIKADCLLYANGRTGN  273 (461)
T ss_pred             HHHcCCEEEECCEEEEEEEe-CCeEE-EEECCCCEEEeCEEEEeecCCcc
Confidence            45678999999999999876 44433 444 6778999999988877654

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=97.58  E-value=7.3e-05  Score=68.42  Aligned_cols=52  Identities=17%  Similarity=0.141  Sum_probs=40.8

Q ss_pred             cHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe-cCceEEcCEEEECCCCCcc
Q 020312          233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLPN  290 (328)
Q Consensus       233 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~-~g~~~~ad~vV~~~~~~~~  290 (328)
                      .+.+.+.+.+++.|+++++++.|++|..   ..   ++. +++.+.+|.||++++..|+
T Consensus       190 ~~~~~l~~~l~~~gI~i~~~~~v~~i~~---~~---v~~~~g~~~~~D~vl~a~G~~pn  242 (438)
T PRK13512        190 DMNQPILDELDKREIPYRLNEEIDAING---NE---VTFKSGKVEHYDMIIEGVGTHPN  242 (438)
T ss_pred             HHHHHHHHHHHhcCCEEEECCeEEEEeC---CE---EEECCCCEEEeCEEEECcCCCcC
Confidence            4667777888899999999999999952   22   333 6778999999988887654

>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]

Probab=97.56  E-value=9.8e-05  Score=63.58  Aligned_cols=43  Identities=14%  Similarity=-0.018  Sum_probs=38.0

Q ss_pred             cccEEEECCChhHHHHHHhhhhC--CCeEEEeccCCCCCCccccc
Q 020312            4 EYDVIVLGTGLKECILSGLLSVD--GLKVLHMDRNDYYGGESSSL   46 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~--G~~V~vlE~~~~~GG~~~s~   46 (328)
                      ...|+|||+|+||+-+|++|.++  +.+|+|+|+.+.+.|..+..
T Consensus        20 ~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFGLvRyG   64 (468)
T KOG1800|consen   20 TPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFGLVRYG   64 (468)
T ss_pred             CceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcccceeeec
Confidence            35899999999999999999884  58999999999999987653

>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]

Probab=97.53  E-value=7.9e-05  Score=67.29  Aligned_cols=40  Identities=38%  Similarity=0.449  Sum_probs=34.9

Q ss_pred             CCCcccEEEECCChhHHHHHHhhhhCCCeEEEeccC-CCCC
Q 020312            1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRN-DYYG   40 (328)
Q Consensus         1 ~~~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~-~~~G   40 (328)
                      |++.|||+|||||.||+-||+..++.|.+++++=-+ +.+|
T Consensus         1 ~~~~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~dtig   41 (621)
T COG0445           1 MPKEYDVIVIGGGHAGVEAALAAARMGAKTLLLTLNLDTIG   41 (621)
T ss_pred             CCCCCceEEECCCccchHHHHhhhccCCeEEEEEcCCCcee
Confidence            567899999999999999999999999999998775 3344

>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B

Probab=97.48  E-value=0.00016  Score=63.52  Aligned_cols=35  Identities=37%  Similarity=0.535  Sum_probs=27.3

Q ss_pred             cccEEEECCChhHHHHHHhhhhCC-CeEEEeccCCC
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDG-LKVLHMDRNDY   38 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G-~~V~vlE~~~~   38 (328)
                      .+|+|+||.|+++|+.|..|.+.+ .+++.||+++.
T Consensus         2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~   37 (341)
T PF13434_consen    2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPS   37 (341)
T ss_dssp             EESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS
T ss_pred             ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCC
Confidence            589999999999999999999887 99999998653

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=97.45  E-value=0.00015  Score=66.03  Aligned_cols=53  Identities=19%  Similarity=0.051  Sum_probs=41.7

Q ss_pred             cHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe-cCceEEcCEEEECCCCCcch
Q 020312          233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLPNK  291 (328)
Q Consensus       233 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~-~g~~~~ad~vV~~~~~~~~~  291 (328)
                      .+.+.+.+.++++|++++++++|++|..+   .   |++ +|+++.||.||.+++..|+.
T Consensus       229 ~~~~~~~~~L~~~gV~v~~~~~v~~v~~~---~---v~~~~g~~i~~d~vi~~~G~~~~~  282 (424)
T PTZ00318        229 ALRKYGQRRLRRLGVDIRTKTAVKEVLDK---E---VVLKDGEVIPTGLVVWSTGVGPGP  282 (424)
T ss_pred             HHHHHHHHHHHHCCCEEEeCCeEEEEeCC---E---EEECCCCEEEccEEEEccCCCCcc
Confidence            46677778889999999999999999633   2   334 78899999999888766553

>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.41  E-value=0.0014  Score=62.07  Aligned_cols=55  Identities=24%  Similarity=0.278  Sum_probs=44.6

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe----cCc--eEEcCEEEECCC
Q 020312          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS----EGE--TAKCKKVVCDPS  286 (328)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~----~g~--~~~ad~vV~~~~  286 (328)
                      ..|..+|.+.+++.|++++.++.++++..+++|+|+||..    +++  .+.|+.||++.+
T Consensus       126 ~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATG  186 (570)
T PRK05675        126 HALLHTLYQGNLKNGTTFLNEWYAVDLVKNQDGAVVGVIAICIETGETVYIKSKATVLATG  186 (570)
T ss_pred             HHHHHHHHHHHhccCCEEEECcEEEEEEEcCCCeEEEEEEEEcCCCcEEEEecCeEEECCC
Confidence            5688999988888899999999999999864789999875    343  478999886543

>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

Probab=97.32  E-value=0.00022  Score=64.59  Aligned_cols=40  Identities=28%  Similarity=0.337  Sum_probs=38.0

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCccc
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~   44 (328)
                      .+++|||+|..||-+|..|+++|++|+++|+.+++||...
T Consensus       137 ~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~~~  176 (415)
T COG0446         137 KDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQLL  176 (415)
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccchhhh
Confidence            5899999999999999999999999999999999999864

>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=97.26  E-value=0.00027  Score=60.04  Aligned_cols=33  Identities=30%  Similarity=0.333  Sum_probs=31.3

Q ss_pred             CcccEEEECCChhHHHHHHhhhhCCCeEEEecc
Q 020312            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDR   35 (328)
Q Consensus         3 ~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~   35 (328)
                      .+||.+|||||-+||+||-+.+..|.+|.+||-
T Consensus        18 ydyDLIviGgGSgGLacaKeAa~~G~kV~~lDf   50 (503)
T KOG4716|consen   18 YDYDLIVIGGGSGGLACAKEAADLGAKVACLDF   50 (503)
T ss_pred             CCccEEEEcCCcchhhHHHHHHhcCCcEEEEee
Confidence            369999999999999999999999999999997

>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.26  E-value=0.00032  Score=59.83  Aligned_cols=43  Identities=21%  Similarity=0.282  Sum_probs=39.5

Q ss_pred             CcccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCcccc
Q 020312            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSS   45 (328)
Q Consensus         3 ~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~s   45 (328)
                      +.||..|||||-.|+.+|...++.|.+|.|+|..-.+||.|-.
T Consensus        19 k~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~f~lGGTCVn   61 (478)
T KOG0405|consen   19 KDFDYLVIGGGSGGVASARRAASHGAKVALCELPFGLGGTCVN   61 (478)
T ss_pred             cccceEEEcCCcchhHHhHHHHhcCceEEEEecCCCcCceEEe
Confidence            3699999999999999999999999999999998899997743

>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]

Probab=97.24  E-value=0.00032  Score=59.39  Aligned_cols=38  Identities=18%  Similarity=0.272  Sum_probs=33.7

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCC
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG   41 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG   41 (328)
                      +..|-|||||++|.-|||.++++|..|.++|-++.-+-
T Consensus         3 ~~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~k~T   40 (439)
T COG1206           3 QQPINVIGAGLAGSEAAWQIAKRGVPVILYEMRPVKGT   40 (439)
T ss_pred             CCceEEEcccccccHHHHHHHHcCCcEEEEEcccccCC
Confidence            45788999999999999999999999999999865443

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=97.18  E-value=0.00047  Score=53.57  Aligned_cols=32  Identities=28%  Similarity=0.449  Sum_probs=30.1

Q ss_pred             cEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (328)
Q Consensus         6 dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~   37 (328)
                      +|+|+|||..|.++|..|+++|++|+++.++.
T Consensus         1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~   32 (157)
T PF01210_consen    1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDE   32 (157)
T ss_dssp             EEEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence            58999999999999999999999999998854

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=97.12  E-value=0.00058  Score=61.25  Aligned_cols=55  Identities=15%  Similarity=0.215  Sum_probs=44.0

Q ss_pred             HHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe-cCceEEcCEEEECCCCCcc
Q 020312          234 LPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLPN  290 (328)
Q Consensus       234 l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~-~g~~~~ad~vV~~~~~~~~  290 (328)
                      +...+.+.+++.|++++++++|++|..+ ++. ..+.. +++++.||.||++++..|+
T Consensus       185 ~~~~l~~~l~~~gV~i~~~~~v~~i~~~-~~~-~~v~~~~g~~i~~D~vI~a~G~~p~  240 (377)
T PRK04965        185 VSSRLQHRLTEMGVHLLLKSQLQGLEKT-DSG-IRATLDSGRSIEVDAVIAAAGLRPN  240 (377)
T ss_pred             HHHHHHHHHHhCCCEEEECCeEEEEEcc-CCE-EEEEEcCCcEEECCEEEECcCCCcc
Confidence            5566677788899999999999999876 444 34555 7889999999999888765

>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein

Probab=97.09  E-value=0.0006  Score=60.86  Aligned_cols=52  Identities=15%  Similarity=0.171  Sum_probs=40.7

Q ss_pred             cHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe-cCceEEcCEEEECCCCCcc
Q 020312          233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLPN  290 (328)
Q Consensus       233 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~-~g~~~~ad~vV~~~~~~~~  290 (328)
                      .+.+.+.+.+++.|+++++++.|++|.   ++   .+.+ +++++.+|.||++++..|+
T Consensus       192 ~~~~~~~~~l~~~gV~v~~~~~v~~i~---~~---~v~~~~g~~i~~D~vi~a~G~~p~  244 (364)
T TIGR03169       192 KVRRLVLRLLARRGIEVHEGAPVTRGP---DG---ALILADGRTLPADAILWATGARAP  244 (364)
T ss_pred             HHHHHHHHHHHHCCCEEEeCCeeEEEc---CC---eEEeCCCCEEecCEEEEccCCChh
Confidence            355666777889999999999999985   23   2444 7889999999988887665

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.

>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]

Probab=96.95  E-value=0.00068  Score=60.26  Aligned_cols=43  Identities=30%  Similarity=0.487  Sum_probs=35.4

Q ss_pred             CcccEEEECCChhHHHHHHhhhhCCCeEEEeccC-CCCCCcccc
Q 020312            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRN-DYYGGESSS   45 (328)
Q Consensus         3 ~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~-~~~GG~~~s   45 (328)
                      ..|||||||||.||.-||...++-|.+.++|-.+ +.+|-..+.
T Consensus        27 ~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~ld~Ig~msCN   70 (679)
T KOG2311|consen   27 STYDVVVIGGGHAGCEAAAAAARLGARTLLLTHNLDTIGEMSCN   70 (679)
T ss_pred             CcccEEEECCCccchHHHHHHHhcCCceEEeecccccccccccC
Confidence            3689999999999999999999999998888876 455544433

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=96.93  E-value=0.0011  Score=58.89  Aligned_cols=54  Identities=24%  Similarity=0.245  Sum_probs=40.4

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe-cCc-eEEcCEEEECCCCCcch
Q 020312          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGE-TAKCKKVVCDPSYLPNK  291 (328)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~-~g~-~~~ad~vV~~~~~~~~~  291 (328)
                      .++.+...+.++++|++|+++++|++|..+   .   |++ +++ .+.|+.+|=+++..+++
T Consensus       209 ~~l~~~a~~~L~~~GV~v~l~~~Vt~v~~~---~---v~~~~g~~~I~~~tvvWaaGv~a~~  264 (405)
T COG1252         209 PKLSKYAERALEKLGVEVLLGTPVTEVTPD---G---VTLKDGEEEIPADTVVWAAGVRASP  264 (405)
T ss_pred             HHHHHHHHHHHHHCCCEEEcCCceEEECCC---c---EEEccCCeeEecCEEEEcCCCcCCh
Confidence            456666777889999999999999999754   2   334 555 59999999776665443

>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]

Probab=96.91  E-value=0.001  Score=58.22  Aligned_cols=33  Identities=33%  Similarity=0.547  Sum_probs=29.9

Q ss_pred             cccEEEECCChhHHHHHHhhhhC----CCeEEEeccC
Q 020312            4 EYDVIVLGTGLKECILSGLLSVD----GLKVLHMDRN   36 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~----G~~V~vlE~~   36 (328)
                      .+||+|||||+.|++.|..|...    .++|+++|..
T Consensus        36 ~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~   72 (481)
T KOG3855|consen   36 KYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAG   72 (481)
T ss_pred             cCCEEEECCchHHHHHHHHhccCCccchheeeEEecc
Confidence            69999999999999999999854    4899999997

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=96.84  E-value=0.0013  Score=52.52  Aligned_cols=33  Identities=24%  Similarity=0.425  Sum_probs=26.8

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~   37 (328)
                      ++|.|||.|..||..|..|+++|++|+.+|.+.
T Consensus         1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~   33 (185)
T PF03721_consen    1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDE   33 (185)
T ss_dssp             -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-H
T ss_pred             CEEEEECCCcchHHHHHHHHhCCCEEEEEeCCh
Confidence            479999999999999999999999999999854

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=96.81  E-value=0.0017  Score=51.69  Aligned_cols=32  Identities=28%  Similarity=0.413  Sum_probs=28.0

Q ss_pred             cEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (328)
Q Consensus         6 dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~   37 (328)
                      +|.|||+|..|...|..++.+|++|+++|.+.
T Consensus         1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~   32 (180)
T PF02737_consen    1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSP   32 (180)
T ss_dssp             EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSH
T ss_pred             CEEEEcCCHHHHHHHHHHHhCCCcEEEEECCh
Confidence            48999999999999999999999999999854

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=96.78  E-value=0.0015  Score=59.03  Aligned_cols=38  Identities=18%  Similarity=0.188  Sum_probs=35.0

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCc
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGE   42 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~   42 (328)
                      -+|+|||||..|+-+|..|++.|.+|+|+|+++++.++
T Consensus       145 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~  182 (396)
T PRK09754        145 RSVVIVGAGTIGLELAASATQRRCKVTVIELAATVMGR  182 (396)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcchhh
Confidence            47999999999999999999999999999999887654

>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.75  E-value=0.0016  Score=60.17  Aligned_cols=34  Identities=32%  Similarity=0.366  Sum_probs=31.7

Q ss_pred             cEEEECCChhHHHHHHhhhhCCCeEEEeccCCCC
Q 020312            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY   39 (328)
Q Consensus         6 dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~   39 (328)
                      +|+|||.|.+|+++|..|.++|++|++.|++...
T Consensus         2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~~   35 (459)
T PRK02705          2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDSP   35 (459)
T ss_pred             eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCch
Confidence            5899999999999999999999999999987654

>PF07156 Prenylcys_lyase: Prenylcysteine lyase; InterPro: IPR010795 This entry represents a conserved region found in a group of prenylcysteine lyases (1

Probab=96.72  E-value=0.0083  Score=53.16  Aligned_cols=111  Identities=16%  Similarity=0.198  Sum_probs=66.1

Q ss_pred             CCCCHHHHHHhcCCChhHH-HHHhhhhhcccCCCCCCCchHHHHHHHHHHHHhhhcccCCCeEEeecCCcCcHHHHHHHH
Q 020312          163 TRVTTRELIAKYGLDDNTI-DFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFARL  241 (328)
Q Consensus       163 ~~~s~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~gG~~~l~~~l~~~  241 (328)
                      ...+..+++++.|+++.+. +++..........    .....   .+...   ..........+.++||..++++.|++ 
T Consensus        68 t~~t~~e~L~~~gi~~~fi~Elv~a~tRvNYgQ----~~~i~---a~~G~---vSla~a~~gl~sV~GGN~qI~~~ll~-  136 (368)
T PF07156_consen   68 TKVTGEEYLKENGISERFINELVQAATRVNYGQ----NVNIH---AFAGL---VSLAGATGGLWSVEGGNWQIFEGLLE-  136 (368)
T ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHhheEeeccc----ccchh---hhhhh---eeeeeccCCceEecCCHHHHHHHHHH-
Confidence            4567888999999988774 5555544322222    11111   11221   11111234568889999999999965 


Q ss_pred             HHHcCcEEEcCcceeEE-EecCCCc-EEEEEe---cC-ceEEcCEEEECCCC
Q 020312          242 SAVYGGTYMLNKPECKV-EFDEEGK-VVGVTS---EG-ETAKCKKVVCDPSY  287 (328)
Q Consensus       242 ~~~~G~~i~~~~~V~~I-~~~~~~~-v~~v~~---~g-~~~~ad~vV~~~~~  287 (328)
                        ..|+++ +|+.|++| ...+++. ...|..   ++ ..-.+|.||+++++
T Consensus       137 --~S~A~v-l~~~Vt~I~~~~~~~~~~y~v~~~~~~~~~~~~yD~VVIAtPl  185 (368)
T PF07156_consen  137 --ASGANV-LNTTVTSITRRSSDGYSLYEVTYKSSSGTESDEYDIVVIATPL  185 (368)
T ss_pred             --HccCcE-ecceeEEEEeccCCCceeEEEEEecCCCCccccCCEEEECCCc
Confidence              467899 99999999 3332333 223332   22 23457999887665

8.3.5 from EC) that are approximately 500 residues long. Prenylcysteine lyase is a FAD-dependent thioether oxidase that degrades a variety of prenylcysteines, producing free cysteine, an isoprenoid aldehyde and hydrogen peroxide as products of the reaction []. It has been noted that this enzyme has considerable homology with ClP55, a 55 kDa protein that is associated with chloride ion pumps [].; GO: 0016670 oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor, 0030328 prenylcysteine catabolic process, 0055114 oxidation-reduction process

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.68  E-value=0.0021  Score=59.68  Aligned_cols=34  Identities=26%  Similarity=0.306  Sum_probs=31.5

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~   38 (328)
                      .+|+|||+|.+|+++|..|+++|.+|+++|+++.
T Consensus        17 ~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~   50 (480)
T PRK01438         17 LRVVVAGLGVSGFAAADALLELGARVTVVDDGDD   50 (480)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch
Confidence            4799999999999999999999999999998764

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=96.67  E-value=0.0025  Score=49.09  Aligned_cols=29  Identities=21%  Similarity=0.453  Sum_probs=27.9

Q ss_pred             EEEECCChhHHHHHHhhhhCCCeEEEecc
Q 020312            7 VIVLGTGLKECILSGLLSVDGLKVLHMDR   35 (328)
Q Consensus         7 vvIvG~G~aGl~aA~~L~~~G~~V~vlE~   35 (328)
                      |+|+|+|..|+..|++|+++|++|+++-+
T Consensus         1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r   29 (151)
T PF02558_consen    1 ILIIGAGAIGSLYAARLAQAGHDVTLVSR   29 (151)
T ss_dssp             EEEESTSHHHHHHHHHHHHTTCEEEEEES
T ss_pred             CEEECcCHHHHHHHHHHHHCCCceEEEEc
Confidence            68999999999999999999999999987

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=96.65  E-value=0.0017  Score=52.07  Aligned_cols=52  Identities=17%  Similarity=0.260  Sum_probs=39.7

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEeccC---C-CCCCcccccchHHHHhhh
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRN---D-YYGGESSSLNLIQLWKRF   55 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~---~-~~GG~~~s~~~~~~~~~~   55 (328)
                      ..+|+|||+|+++-+||.+++++-.+-+|+|..   + -+||...+.+.-+-+|||
T Consensus         8 ~e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~i~pGGQLtTTT~veNfPGF   63 (322)
T KOG0404|consen    8 NENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANGIAPGGQLTTTTDVENFPGF   63 (322)
T ss_pred             eeeEEEEccCchHHHHHHHHhhcccCceEEeeeeccCcCCCceeeeeeccccCCCC
Confidence            458999999999999999999999999999974   2 357766554432334444

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=96.60  E-value=0.0027  Score=58.16  Aligned_cols=38  Identities=21%  Similarity=0.158  Sum_probs=34.6

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCc
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGE   42 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~   42 (328)
                      -+|+|||||.+|+.+|..|++.|.+|+|+|+++++..+
T Consensus       158 ~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~  195 (438)
T PRK07251        158 ERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTILPR  195 (438)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccCCC
Confidence            47999999999999999999999999999998877544

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=96.59  E-value=0.003  Score=55.12  Aligned_cols=37  Identities=27%  Similarity=0.424  Sum_probs=32.9

Q ss_pred             CCC-cccEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312            1 MDE-EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (328)
Q Consensus         1 ~~~-~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~   37 (328)
                      |+. .++|+|||+|..|.+.|+.|+++|++|+++.++.
T Consensus         1 ~~~~~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~   38 (313)
T PRK06249          1 MDSETPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD   38 (313)
T ss_pred             CCCcCcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence            443 5799999999999999999999999999998854

>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]

Probab=96.59  E-value=0.0018  Score=54.12  Aligned_cols=35  Identities=14%  Similarity=0.011  Sum_probs=28.7

Q ss_pred             CcccEEEECCChhHHHHHHhhhhCC-------CeEEEeccCC
Q 020312            3 EEYDVIVLGTGLKECILSGLLSVDG-------LKVLHMDRND   37 (328)
Q Consensus         3 ~~~dvvIvG~G~aGl~aA~~L~~~G-------~~V~vlE~~~   37 (328)
                      +..+|+|||+|+.||++|+.+.+.+       .+|+|++-+.
T Consensus         2 ~~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Drf   43 (342)
T KOG3923|consen    2 KTPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISDRF   43 (342)
T ss_pred             CCccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecCCC
Confidence            3579999999999999998888754       6788887543

>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]

Probab=96.58  E-value=0.0013  Score=56.27  Aligned_cols=39  Identities=23%  Similarity=0.477  Sum_probs=32.9

Q ss_pred             CcccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCcc
Q 020312            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGES   43 (328)
Q Consensus         3 ~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~   43 (328)
                      ..|||+|||||++|.+||.+.+++|.+.-|+  ..+.||..
T Consensus       210 ~~yDVLvVGgGPAgaaAAiYaARKGiRTGl~--aerfGGQv  248 (520)
T COG3634         210 DAYDVLVVGGGPAGAAAAIYAARKGIRTGLV--AERFGGQV  248 (520)
T ss_pred             CCceEEEEcCCcchhHHHHHHHhhcchhhhh--hhhhCCee
Confidence            3599999999999999999999999887665  24677754

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.55  E-value=0.0033  Score=54.26  Aligned_cols=37  Identities=24%  Similarity=0.226  Sum_probs=33.6

Q ss_pred             CCCcccEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312            1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (328)
Q Consensus         1 ~~~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~   37 (328)
                      |+.-.+|.|||+|..|...|..|+++|++|++++++.
T Consensus         1 ~~~~~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~   37 (292)
T PRK07530          1 MMAIKKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSA   37 (292)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            5666789999999999999999999999999999864

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.54  E-value=0.0029  Score=54.32  Aligned_cols=38  Identities=21%  Similarity=0.323  Sum_probs=33.1

Q ss_pred             CCCc-ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCC
Q 020312            1 MDEE-YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (328)
Q Consensus         1 ~~~~-~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~   38 (328)
                      |+.. .+|.|||+|..|...|..|+++|++|+++|.++.
T Consensus         1 ~~~~~~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~   39 (286)
T PRK07819          1 MSDAIQRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEE   39 (286)
T ss_pred             CCCCccEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHH
Confidence            4444 3799999999999999999999999999998754

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=96.52  E-value=0.0028  Score=58.66  Aligned_cols=37  Identities=16%  Similarity=0.232  Sum_probs=33.7

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG   41 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG   41 (328)
                      -+++|||||.+|+-+|..|++.|.+|+|+|+++++..
T Consensus       181 ~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~il~  217 (472)
T PRK05976        181 KSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRILP  217 (472)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccCC
Confidence            5899999999999999999999999999999887543

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=96.50  E-value=0.0034  Score=56.37  Aligned_cols=37  Identities=27%  Similarity=0.212  Sum_probs=33.8

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG   41 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG   41 (328)
                      .+|+|||||.+|+-+|..|++.|.+|+++|+.+++..
T Consensus       142 ~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~l~  178 (377)
T PRK04965        142 QRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASLLA  178 (377)
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCcccc
Confidence            5799999999999999999999999999999887653

>KOG2755 consensus Oxidoreductase [General function prediction only]

Probab=96.50  E-value=0.0015  Score=53.67  Aligned_cols=37  Identities=16%  Similarity=0.261  Sum_probs=30.9

Q ss_pred             cEEEECCChhHHHHHHhhhhC--CCeEEEeccCCCCCCc
Q 020312            6 DVIVLGTGLKECILSGLLSVD--GLKVLHMDRNDYYGGE   42 (328)
Q Consensus         6 dvvIvG~G~aGl~aA~~L~~~--G~~V~vlE~~~~~GG~   42 (328)
                      +.+||||||+|.+||-.|++.  ..+|+++-+++.+---
T Consensus         1 kfivvgggiagvscaeqla~~~psa~illitass~vksv   39 (334)
T KOG2755|consen    1 KFIVVGGGIAGVSCAEQLAQLEPSAEILLITASSFVKSV   39 (334)
T ss_pred             CeEEEcCccccccHHHHHHhhCCCCcEEEEeccHHHHHH
Confidence            468999999999999999975  5789999988776443

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=96.39  E-value=0.0035  Score=54.56  Aligned_cols=32  Identities=22%  Similarity=0.306  Sum_probs=30.6

Q ss_pred             cEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (328)
Q Consensus         6 dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~   37 (328)
                      +|.|||+|..|.+.|..|+++|++|++++++.
T Consensus         4 ~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~   35 (308)
T PRK06129          4 SVAIIGAGLIGRAWAIVFARAGHEVRLWDADP   35 (308)
T ss_pred             EEEEECccHHHHHHHHHHHHCCCeeEEEeCCH
Confidence            79999999999999999999999999999875

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=96.38  E-value=0.0033  Score=61.79  Aligned_cols=55  Identities=18%  Similarity=0.215  Sum_probs=44.0

Q ss_pred             HHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe-cCceEEcCEEEECCCCCcc
Q 020312          234 LPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLPN  290 (328)
Q Consensus       234 l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~-~g~~~~ad~vV~~~~~~~~  290 (328)
                      +.+.+.+.++++|+++++++.|++|..+  +.+..|+. +|+++.+|.||.+++..|+
T Consensus       184 ~~~~l~~~l~~~GV~v~~~~~v~~i~~~--~~~~~v~~~dG~~i~~D~Vi~a~G~~Pn  239 (785)
T TIGR02374       184 AGRLLQRELEQKGLTFLLEKDTVEIVGA--TKADRIRFKDGSSLEADLIVMAAGIRPN  239 (785)
T ss_pred             HHHHHHHHHHHcCCEEEeCCceEEEEcC--CceEEEEECCCCEEEcCEEEECCCCCcC
Confidence            3455566788899999999999999754  45566666 7889999999999988765

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=96.38  E-value=0.004  Score=57.48  Aligned_cols=37  Identities=16%  Similarity=0.224  Sum_probs=34.0

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG   41 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG   41 (328)
                      .+++|||||.+|+-+|..|++.|.+|+++|+++++..
T Consensus       171 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~  207 (461)
T TIGR01350       171 ESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRILP  207 (461)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCCCC
Confidence            5899999999999999999999999999999887643

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>TIGR02053 MerA mercuric reductase

Probab=96.36  E-value=0.0041  Score=57.48  Aligned_cols=37  Identities=22%  Similarity=0.201  Sum_probs=33.9

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG   41 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG   41 (328)
                      -+++|||+|.+|+-+|..|++.|.+|+|+|+++++..
T Consensus       167 ~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~  203 (463)
T TIGR02053       167 ESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLLP  203 (463)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCCC
Confidence            5899999999999999999999999999999877654

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=96.32  E-value=0.0043  Score=51.19  Aligned_cols=33  Identities=27%  Similarity=0.507  Sum_probs=31.0

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~   37 (328)
                      ++++|||+|-.|.+.|..|++.|++|+++|+.+
T Consensus         1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~   33 (225)
T COG0569           1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDE   33 (225)
T ss_pred             CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCH
Confidence            479999999999999999999999999999865

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=96.30  E-value=0.0057  Score=53.74  Aligned_cols=37  Identities=30%  Similarity=0.327  Sum_probs=33.8

Q ss_pred             CCCcccEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312            1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (328)
Q Consensus         1 ~~~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~   37 (328)
                      |.+.++|.|||+|.-|...|..|+++|++|++++++.
T Consensus         1 ~~~~m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~   37 (328)
T PRK14618          1 MHHGMRVAVLGAGAWGTALAVLAASKGVPVRLWARRP   37 (328)
T ss_pred             CCCCCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            5667899999999999999999999999999999853

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=96.29  E-value=0.0048  Score=57.07  Aligned_cols=37  Identities=16%  Similarity=0.113  Sum_probs=34.1

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG   41 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG   41 (328)
                      -+++|||||..|+-.|..|++.|.+|+|+|+.+++..
T Consensus       175 ~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~il~  211 (471)
T PRK06467        175 KRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVIP  211 (471)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCC
Confidence            4799999999999999999999999999999887654

>PRK07846 mycothione reductase; Reviewed

Probab=96.27  E-value=0.0051  Score=56.55  Aligned_cols=36  Identities=17%  Similarity=0.332  Sum_probs=33.5

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYG   40 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~G   40 (328)
                      -+++|||||..|+-+|..|++.|.+|+|+|+++++.
T Consensus       167 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll  202 (451)
T PRK07846        167 ESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLL  202 (451)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccc
Confidence            589999999999999999999999999999988764

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=96.26  E-value=0.0051  Score=56.59  Aligned_cols=37  Identities=22%  Similarity=0.254  Sum_probs=34.0

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG   41 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG   41 (328)
                      -+++|||||.+|+-.|..|++.|.+|+|+|+++++..
T Consensus       167 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il~  203 (450)
T TIGR01421       167 KRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVLR  203 (450)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCc
Confidence            4799999999999999999999999999999887653

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=96.26  E-value=0.0053  Score=56.63  Aligned_cols=37  Identities=19%  Similarity=0.296  Sum_probs=33.6

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG   41 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG   41 (328)
                      -+++|||||.+|+-+|..|++.|.+|+|+|+++++..
T Consensus       171 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ll~  207 (458)
T PRK06912        171 SSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLLP  207 (458)
T ss_pred             CcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCc
Confidence            4799999999999999999999999999999887643

>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=96.25  E-value=0.049  Score=47.99  Aligned_cols=37  Identities=35%  Similarity=0.482  Sum_probs=32.8

Q ss_pred             CCCcccEEEECCChhHHHHHHhhhhCC-CeEEEeccCC
Q 020312            1 MDEEYDVIVLGTGLKECILSGLLSVDG-LKVLHMDRND   37 (328)
Q Consensus         1 ~~~~~dvvIvG~G~aGl~aA~~L~~~G-~~V~vlE~~~   37 (328)
                      |+..+|+|.||-|++-|+.|..|.+++ .+++.|||..
T Consensus         2 ~~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp   39 (436)
T COG3486           2 MAEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKP   39 (436)
T ss_pred             CCcceeeEEEccCchHHHHHHHhccccCcceEEEecCC
Confidence            556799999999999999999999876 8899999954

>PRK06370 mercuric reductase; Validated

Probab=96.24  E-value=0.0059  Score=56.44  Aligned_cols=38  Identities=13%  Similarity=0.192  Sum_probs=34.7

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCc
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGE   42 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~   42 (328)
                      -+|+|||||.+|+-+|..|++.|.+|+|+|+++++...
T Consensus       172 ~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~  209 (463)
T PRK06370        172 EHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLLPR  209 (463)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCCcc
Confidence            57999999999999999999999999999998877553

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=96.22  E-value=0.0058  Score=56.49  Aligned_cols=37  Identities=19%  Similarity=0.206  Sum_probs=33.9

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG   41 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG   41 (328)
                      -+++|||||..|+-.|..|++.|.+|+|+|+.+++..
T Consensus       175 ~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~il~  211 (466)
T PRK06115        175 KHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRICP  211 (466)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCCCC
Confidence            5799999999999999999999999999999887644

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=96.22  E-value=0.005  Score=53.88  Aligned_cols=33  Identities=24%  Similarity=0.402  Sum_probs=30.5

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~   37 (328)
                      ++|.|+|+|-.||++|..|++.||+|+.+|...
T Consensus         1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~   33 (414)
T COG1004           1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDE   33 (414)
T ss_pred             CceEEECCchHHHHHHHHHHHcCCeEEEEeCCH
Confidence            479999999999999999999999999999753

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=96.17  E-value=0.0063  Score=52.84  Aligned_cols=33  Identities=24%  Similarity=0.281  Sum_probs=31.0

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEeccC
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRN   36 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~   36 (328)
                      .++|+|||+|..|...|++|++.|.+|+++.++
T Consensus         2 ~m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~   34 (305)
T PRK05708          2 SMTWHILGAGSLGSLWACRLARAGLPVRLILRD   34 (305)
T ss_pred             CceEEEECCCHHHHHHHHHHHhCCCCeEEEEec
Confidence            468999999999999999999999999999986

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=96.16  E-value=0.0062  Score=56.27  Aligned_cols=37  Identities=14%  Similarity=0.114  Sum_probs=33.7

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG   41 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG   41 (328)
                      -+++|||||.+|+-+|..|++.|.+|+++|+++++..
T Consensus       173 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~  209 (462)
T PRK06416        173 KSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRILP  209 (462)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCcCC
Confidence            4799999999999999999999999999999887643

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=96.13  E-value=0.0061  Score=55.87  Aligned_cols=37  Identities=22%  Similarity=0.229  Sum_probs=33.8

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG   41 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG   41 (328)
                      -+++|||||..|+-+|..|++.|.+|+|+|+++++..
T Consensus       149 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~~  185 (438)
T PRK13512        149 DKALVVGAGYISLEVLENLYERGLHPTLIHRSDKINK  185 (438)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCcEEEEecccccch
Confidence            4799999999999999999999999999999887654

>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase

Probab=96.12  E-value=0.0066  Score=55.48  Aligned_cols=35  Identities=20%  Similarity=0.335  Sum_probs=32.8

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY   39 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~   39 (328)
                      -+|+|||||.+|+-+|..|++.|.+|+++++++.+
T Consensus       138 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~  172 (427)
T TIGR03385       138 ENVVIIGGGYIGIEMAEALRERGKNVTLIHRSERI  172 (427)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEECCccc
Confidence            47999999999999999999999999999998876

Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=96.12  E-value=0.0074  Score=55.03  Aligned_cols=38  Identities=18%  Similarity=0.267  Sum_probs=34.6

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCc
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGE   42 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~   42 (328)
                      -.++|||||..|+=.|..+++.|.+|+|+|+++++--.
T Consensus       174 ~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iLp~  211 (454)
T COG1249         174 KSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRILPG  211 (454)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCCc
Confidence            46999999999999999999999999999999886553

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.10  E-value=0.0077  Score=52.36  Aligned_cols=33  Identities=18%  Similarity=0.208  Sum_probs=30.8

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~   37 (328)
                      ..|+|||+|..|...|..++.+|++|+++|.+.
T Consensus         8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~   40 (321)
T PRK07066          8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAP   40 (321)
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence            469999999999999999999999999999864

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=96.10  E-value=0.0069  Score=56.02  Aligned_cols=37  Identities=16%  Similarity=0.130  Sum_probs=33.5

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG   41 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG   41 (328)
                      -+++|||||..|+-+|..|++.|.+|+|+|+++++..
T Consensus       173 ~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~  209 (466)
T PRK07818        173 KSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRALP  209 (466)
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcCC
Confidence            4799999999999999999999999999999876543

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=96.09  E-value=0.0076  Score=55.66  Aligned_cols=37  Identities=30%  Similarity=0.291  Sum_probs=34.2

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG   41 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG   41 (328)
                      -+++|||||.+|+-+|..|++.|.+|+++|+++++..
T Consensus       170 k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~  206 (460)
T PRK06292        170 KSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRILP  206 (460)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCc
Confidence            5799999999999999999999999999999887654

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.07  E-value=0.0077  Score=51.84  Aligned_cols=33  Identities=24%  Similarity=0.306  Sum_probs=30.7

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~   37 (328)
                      .+|+|||+|..|.+.|..|+++|++|++++.++
T Consensus         4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~   36 (287)
T PRK08293          4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISD   36 (287)
T ss_pred             cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence            479999999999999999999999999999864

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.07  E-value=0.0084  Score=55.21  Aligned_cols=34  Identities=29%  Similarity=0.461  Sum_probs=31.9

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~   37 (328)
                      ..+|+|+|+|.+|+.+|..|+++|++|+++|++.
T Consensus         5 ~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~   38 (450)
T PRK14106          5 GKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE   38 (450)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            5789999999999999999999999999999864

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=96.05  E-value=0.0092  Score=46.87  Aligned_cols=33  Identities=21%  Similarity=0.153  Sum_probs=29.2

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEeccC
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRN   36 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~   36 (328)
                      +.+|+|+|+|.+|..||..|...|.+|+++|.+
T Consensus        20 p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~   52 (168)
T PF01262_consen   20 PAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDER   52 (168)
T ss_dssp             T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESS
T ss_pred             CeEEEEECCCHHHHHHHHHHhHCCCEEEeccCC
Confidence            478999999999999999999999999999974

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family

Probab=96.04  E-value=0.022  Score=50.68  Aligned_cols=59  Identities=15%  Similarity=0.140  Sum_probs=45.3

Q ss_pred             EEeecCC-cCcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe--cCceEEcCEEEECCC
Q 020312          224 YIYPLYG-LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS--EGETAKCKKVVCDPS  286 (328)
Q Consensus       224 ~~~~~gG-~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~--~g~~~~ad~vV~~~~  286 (328)
                      .+||... .+++.++|...++++|++|+++++|++|  + ++. ..+.+  +++.++||+||++++
T Consensus        77 rvfP~S~~A~sVv~~L~~~l~~~gV~i~~~~~V~~i--~-~~~-~~v~~~~~~~~~~a~~vIlAtG  138 (376)
T TIGR03862        77 RVFPVEMKAAPLLRAWLKRLAEQGVQFHTRHRWIGW--Q-GGT-LRFETPDGQSTIEADAVVLALG  138 (376)
T ss_pred             EECCCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEE--e-CCc-EEEEECCCceEEecCEEEEcCC
Confidence            5666543 5779999999999999999999999999  3 333 45665  335699999886543

This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=96.03  E-value=0.0076  Score=52.31  Aligned_cols=31  Identities=23%  Similarity=0.400  Sum_probs=29.4

Q ss_pred             cEEEECCChhHHHHHHhhhhCCCeEEEeccC
Q 020312            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRN   36 (328)
Q Consensus         6 dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~   36 (328)
                      +|+|||+|..|...|..|+++|++|+++.++
T Consensus         2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~   32 (304)
T PRK06522          2 KIAILGAGAIGGLFGAALAQAGHDVTLVARR   32 (304)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEEECC
Confidence            6999999999999999999999999999984

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=96.00  E-value=0.01  Score=51.33  Aligned_cols=37  Identities=27%  Similarity=0.354  Sum_probs=33.6

Q ss_pred             CCCcccEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312            1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (328)
Q Consensus         1 ~~~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~   37 (328)
                      |++-.+|.|||+|..|...|..|+++|++|+++|.+.
T Consensus         1 ~~~~~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~   37 (295)
T PLN02545          1 MAEIKKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDP   37 (295)
T ss_pred             CCCcCEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence            6665679999999999999999999999999999864

>PRK08229 2-dehydropantoate 2-reductase; Provisional

Probab=95.99  E-value=0.0077  Score=53.23  Aligned_cols=32  Identities=34%  Similarity=0.556  Sum_probs=30.1

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRN   36 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~   36 (328)
                      ++|.|||+|..|...|..|+++|++|++++++
T Consensus         3 mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~   34 (341)
T PRK08229          3 ARICVLGAGSIGCYLGGRLAAAGADVTLIGRA   34 (341)
T ss_pred             ceEEEECCCHHHHHHHHHHHhcCCcEEEEecH
Confidence            37999999999999999999999999999985

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=95.94  E-value=0.0092  Score=55.34  Aligned_cols=37  Identities=16%  Similarity=0.187  Sum_probs=33.8

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG   41 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG   41 (328)
                      -.|+|||+|.+|+-+|..|++.|.+|+|+|+++.+..
T Consensus       184 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~  220 (475)
T PRK06327        184 KKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFLA  220 (475)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCccCC
Confidence            4899999999999999999999999999999887643

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=95.92  E-value=0.0087  Score=51.97  Aligned_cols=30  Identities=27%  Similarity=0.365  Sum_probs=28.8

Q ss_pred             cEEEECCChhHHHHHHhhhhCCCeEEEecc
Q 020312            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDR   35 (328)
Q Consensus         6 dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~   35 (328)
                      +|+|||+|..|...|..|+++|++|+++.+
T Consensus         2 kI~IiG~G~iG~~~a~~L~~~g~~V~~~~r   31 (305)
T PRK12921          2 RIAVVGAGAVGGTFGGRLLEAGRDVTFLVR   31 (305)
T ss_pred             eEEEECCCHHHHHHHHHHHHCCCceEEEec
Confidence            699999999999999999999999999987

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.89  E-value=0.0094  Score=51.34  Aligned_cols=32  Identities=19%  Similarity=0.402  Sum_probs=30.2

Q ss_pred             cEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (328)
Q Consensus         6 dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~   37 (328)
                      +|+|||+|..|...|..|+++|++|+++++++
T Consensus         3 ~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~   34 (288)
T PRK09260          3 KLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQ   34 (288)
T ss_pred             EEEEECccHHHHHHHHHHHhCCCcEEEEeCCH
Confidence            68999999999999999999999999999864

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=95.87  E-value=0.0096  Score=54.02  Aligned_cols=34  Identities=18%  Similarity=0.183  Sum_probs=31.5

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~   37 (328)
                      ..+|.|||.|..|++.|..|+++|++|++++.+.
T Consensus         3 ~~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~   36 (415)
T PRK11064          3 FETISVIGLGYIGLPTAAAFASRQKQVIGVDINQ   36 (415)
T ss_pred             ccEEEEECcchhhHHHHHHHHhCCCEEEEEeCCH
Confidence            4689999999999999999999999999999854

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=95.83  E-value=0.013  Score=54.29  Aligned_cols=38  Identities=21%  Similarity=0.258  Sum_probs=34.5

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCc
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGE   42 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~   42 (328)
                      -+++|||+|..|+-+|..|++.|.+|+++|+++++...
T Consensus       178 ~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l~~  215 (466)
T PRK07845        178 EHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVLPG  215 (466)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcCCCC
Confidence            47999999999999999999999999999998876654

>TIGR03452 mycothione_red mycothione reductase

Probab=95.83  E-value=0.011  Score=54.48  Aligned_cols=37  Identities=16%  Similarity=0.263  Sum_probs=33.8

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG   41 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG   41 (328)
                      .+++|||||..|+-.|..|++.|.+|+++|+.+++..
T Consensus       170 k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ll~  206 (452)
T TIGR03452       170 ESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKLLR  206 (452)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcccc
Confidence            4799999999999999999999999999999887643

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases

Probab=95.79  E-value=0.012  Score=51.11  Aligned_cols=32  Identities=22%  Similarity=0.373  Sum_probs=29.7

Q ss_pred             cEEEECCChhHHHHHHhhhhCC--CeEEEeccCC
Q 020312            6 DVIVLGTGLKECILSGLLSVDG--LKVLHMDRND   37 (328)
Q Consensus         6 dvvIvG~G~aGl~aA~~L~~~G--~~V~vlE~~~   37 (328)
                      +|+|||+|..|.++|+.|+++|  .+|.++|++.
T Consensus         2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~   35 (308)
T cd05292           2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINK   35 (308)
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCc
Confidence            6999999999999999999999  6899999864

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=95.76  E-value=0.011  Score=55.36  Aligned_cols=36  Identities=22%  Similarity=0.035  Sum_probs=33.0

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYG   40 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~G   40 (328)
                      .+|+|||||.+|+-+|..|++.|.+|+|+|+.+.+.
T Consensus       353 k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~~l~  388 (515)
T TIGR03140       353 KDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFADELK  388 (515)
T ss_pred             CEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCCcCC
Confidence            489999999999999999999999999999877663

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>PRK04148 hypothetical protein; Provisional

Probab=95.76  E-value=0.01  Score=44.19  Aligned_cols=33  Identities=24%  Similarity=0.358  Sum_probs=30.1

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~   38 (328)
                      .++++||.| .|.+.|..|++.|++|+.+|-+..
T Consensus        18 ~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~   50 (134)
T PRK04148         18 KKIVELGIG-FYFKVAKKLKESGFDVIVIDINEK   50 (134)
T ss_pred             CEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHH
Confidence            579999999 999999999999999999998654

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=95.75  E-value=0.011  Score=58.21  Aligned_cols=36  Identities=19%  Similarity=0.070  Sum_probs=33.1

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYG   40 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~G   40 (328)
                      -+++|||||.+|+-+|..|++.|.+|+|+|+.+++-
T Consensus       141 k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~ll  176 (785)
T TIGR02374       141 KKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGLM  176 (785)
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCeEEEEccCCchh
Confidence            479999999999999999999999999999987653

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=95.70  E-value=0.013  Score=53.90  Aligned_cols=37  Identities=14%  Similarity=0.112  Sum_probs=33.4

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG   41 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG   41 (328)
                      -+|+|||||.+|+-+|..|++.|.+|+++|+++++-+
T Consensus       150 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~  186 (444)
T PRK09564        150 KNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDRILP  186 (444)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCcccCc
Confidence            5799999999999999999999999999999876543

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=95.67  E-value=0.013  Score=56.10  Aligned_cols=38  Identities=11%  Similarity=0.091  Sum_probs=34.5

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCc
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGE   42 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~   42 (328)
                      -+|+|||||..|+-.|..|++.|.+|+|+|+.+++...
T Consensus       313 k~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~ll~~  350 (659)
T PTZ00153        313 NYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQLLPL  350 (659)
T ss_pred             CceEEECCCHHHHHHHHHHHhCCCeEEEEeccCccccc
Confidence            47999999999999999999999999999999887653

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=95.66  E-value=0.035  Score=44.89  Aligned_cols=54  Identities=20%  Similarity=0.222  Sum_probs=38.5

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe-cCceEEcCEEEECCCC
Q 020312          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSY  287 (328)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~-~g~~~~ad~vV~~~~~  287 (328)
                      ..+.+-+.+.+++.+.+++++++|++|..+ +++ +.|++ ++++++||+||++.+.
T Consensus        82 ~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~-~~~-w~v~~~~~~~~~a~~VVlAtG~  136 (203)
T PF13738_consen   82 EEVLDYLQEYAERFGLEIRFNTRVESVRRD-GDG-WTVTTRDGRTIRADRVVLATGH  136 (203)
T ss_dssp             HHHHHHHHHHHHHTTGGEETS--EEEEEEE-TTT-EEEEETTS-EEEEEEEEE---S
T ss_pred             HHHHHHHHHHHhhcCcccccCCEEEEEEEe-ccE-EEEEEEecceeeeeeEEEeeec
Confidence            345666667778889999999999999998 666 66777 5569999999987665

...

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=95.60  E-value=0.015  Score=53.48  Aligned_cols=36  Identities=19%  Similarity=0.330  Sum_probs=32.8

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYG   40 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~G   40 (328)
                      -+++|||+|.+|+-+|..|++.|.+|+|+|+++.+.
T Consensus       167 ~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l  202 (446)
T TIGR01424       167 KSILILGGGYIAVEFAGIWRGLGVQVTLIYRGELIL  202 (446)
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCCC
Confidence            469999999999999999999999999999987653

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.57  E-value=0.017  Score=50.37  Aligned_cols=37  Identities=22%  Similarity=0.431  Sum_probs=32.4

Q ss_pred             CCCcccEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312            1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (328)
Q Consensus         1 ~~~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~   37 (328)
                      |.+-.+|.|||+|..|.+.|..|+++|++|++++.+.
T Consensus         1 ~~~~~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~   37 (311)
T PRK06130          1 MNPIQNLAIIGAGTMGSGIAALFARKGLQVVLIDVME   37 (311)
T ss_pred             CCCccEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            4444579999999999999999999999999999754

>PTZ00058 glutathione reductase; Provisional

Probab=95.54  E-value=0.017  Score=54.44  Aligned_cols=38  Identities=13%  Similarity=0.124  Sum_probs=34.3

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCC
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG   41 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG   41 (328)
                      .-+|+|||||..|+-+|..|++.|.+|+|+|+++++..
T Consensus       237 pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~il~  274 (561)
T PTZ00058        237 AKRIGIAGSGYIAVELINVVNRLGAESYIFARGNRLLR  274 (561)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCCcEEEEEecccccc
Confidence            35799999999999999999999999999999887653

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=95.52  E-value=0.014  Score=50.31  Aligned_cols=33  Identities=18%  Similarity=0.273  Sum_probs=30.7

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~   37 (328)
                      .+|.|||+|..|...|..|+++|++|+++|+++
T Consensus         4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~   36 (291)
T PRK06035          4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSE   36 (291)
T ss_pred             cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCH
Confidence            469999999999999999999999999999865

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=95.51  E-value=0.018  Score=52.92  Aligned_cols=37  Identities=16%  Similarity=0.198  Sum_probs=33.6

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG   41 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG   41 (328)
                      -+++|||+|..|+-.|..|++.|.+|+|+|+++.+..
T Consensus       159 ~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~  195 (441)
T PRK08010        159 GHLGILGGGYIGVEFASMFANFGSKVTILEAASLFLP  195 (441)
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCC
Confidence            4799999999999999999999999999999876643

>PRK10262 thioredoxin reductase; Provisional

Probab=95.49  E-value=0.017  Score=50.61  Aligned_cols=35  Identities=26%  Similarity=0.203  Sum_probs=32.5

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY   39 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~   39 (328)
                      -+|+|||+|.+|+-+|..|++.|.+|+++++++.+
T Consensus       147 ~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~~  181 (321)
T PRK10262        147 QKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGF  181 (321)
T ss_pred             CEEEEECCCHHHHHHHHHHHhhCCEEEEEEECCcc
Confidence            47999999999999999999999999999998765

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=95.47  E-value=0.016  Score=57.35  Aligned_cols=36  Identities=19%  Similarity=0.131  Sum_probs=32.9

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYG   40 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~G   40 (328)
                      -.++|||||..|+-+|..|++.|.+|+|+|+.+++-
T Consensus       146 k~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~ll  181 (847)
T PRK14989        146 KRGAVVGGGLLGLEAAGALKNLGVETHVIEFAPMLM  181 (847)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEeccccch
Confidence            468999999999999999999999999999988643

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=95.41  E-value=0.018  Score=54.53  Aligned_cols=35  Identities=26%  Similarity=0.314  Sum_probs=32.5

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY   39 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~   39 (328)
                      -+|+|||||.+|+-+|..|++.|.+|+++++++..
T Consensus       144 ~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~~~  178 (555)
T TIGR03143       144 MDVFVIGGGFAAAEEAVFLTRYASKVTVIVREPDF  178 (555)
T ss_pred             CEEEEECCCHHHHHHHHHHHccCCEEEEEEeCCcc
Confidence            47999999999999999999999999999998764

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=95.40  E-value=0.018  Score=54.08  Aligned_cols=35  Identities=17%  Similarity=-0.041  Sum_probs=32.5

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY   39 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~   39 (328)
                      -+|+|||||.+|+-+|..|+..|.+|+|+++++.+
T Consensus       352 k~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~l  386 (517)
T PRK15317        352 KRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPEL  386 (517)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCEEEEEEECccc
Confidence            48999999999999999999999999999987765

>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent

Probab=95.38  E-value=0.023  Score=49.22  Aligned_cols=33  Identities=18%  Similarity=0.270  Sum_probs=29.8

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCC-eEEEeccCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGL-KVLHMDRND   37 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~-~V~vlE~~~   37 (328)
                      ++|+|||+|..|.++|+.|+.+|+ +|+++|...
T Consensus         2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~   35 (305)
T TIGR01763         2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVE   35 (305)
T ss_pred             CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence            479999999999999999999887 899999843

The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.37  E-value=0.016  Score=49.68  Aligned_cols=32  Identities=25%  Similarity=0.389  Sum_probs=30.1

Q ss_pred             cEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (328)
Q Consensus         6 dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~   37 (328)
                      +|.|||+|..|.+.|..|+++|++|+++|.+.
T Consensus         5 kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~   36 (282)
T PRK05808          5 KIGVIGAGTMGNGIAQVCAVAGYDVVMVDISD   36 (282)
T ss_pred             EEEEEccCHHHHHHHHHHHHCCCceEEEeCCH
Confidence            69999999999999999999999999999754

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=95.36  E-value=0.019  Score=52.81  Aligned_cols=34  Identities=21%  Similarity=0.138  Sum_probs=31.7

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~   38 (328)
                      -+|+|||||..|+-+|..|++.|.+|+|++++++
T Consensus       273 k~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~~  306 (449)
T TIGR01316       273 KSVVVIGGGNTAVDSARTALRLGAEVHCLYRRTR  306 (449)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCEEEEEeecCc
Confidence            4899999999999999999999999999998764

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=95.33  E-value=0.018  Score=52.37  Aligned_cols=32  Identities=28%  Similarity=0.373  Sum_probs=30.3

Q ss_pred             cEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (328)
Q Consensus         6 dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~   37 (328)
                      +|.|||.|..|+..|..|+++|++|++++++.
T Consensus         2 kI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~   33 (411)
T TIGR03026         2 KIAVIGLGYVGLPLAALLADLGHEVTGVDIDQ   33 (411)
T ss_pred             EEEEECCCchhHHHHHHHHhcCCeEEEEECCH
Confidence            69999999999999999999999999999864

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=95.31  E-value=0.029  Score=43.93  Aligned_cols=33  Identities=21%  Similarity=0.140  Sum_probs=29.7

Q ss_pred             cccEEEECCCh-hHHHHHHhhhhCCCeEEEeccC
Q 020312            4 EYDVIVLGTGL-KECILSGLLSVDGLKVLHMDRN   36 (328)
Q Consensus         4 ~~dvvIvG~G~-aGl~aA~~L~~~G~~V~vlE~~   36 (328)
                      ..+|+|||+|- +|..+|.+|.++|.+|+++.+.
T Consensus        44 gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~   77 (168)
T cd01080          44 GKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSK   77 (168)
T ss_pred             CCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECC
Confidence            47899999995 6999999999999999999874

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=95.27  E-value=0.023  Score=49.95  Aligned_cols=32  Identities=25%  Similarity=0.287  Sum_probs=29.8

Q ss_pred             cEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (328)
Q Consensus         6 dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~   37 (328)
                      +|.|||+|.-|...|..|+++|++|+++.++.
T Consensus         2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~   33 (326)
T PRK14620          2 KISILGAGSFGTAIAIALSSKKISVNLWGRNH   33 (326)
T ss_pred             EEEEECcCHHHHHHHHHHHHCCCeEEEEecCH
Confidence            59999999999999999999999999998853

>PLN02546 glutathione reductase

Probab=95.22  E-value=0.023  Score=53.59  Aligned_cols=37  Identities=14%  Similarity=0.100  Sum_probs=33.7

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG   41 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG   41 (328)
                      -+|+|||||..|+-.|..|++.|.+|+|+|+.+.+..
T Consensus       253 k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~il~  289 (558)
T PLN02546        253 EKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVLR  289 (558)
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCeEEEEEecccccc
Confidence            4899999999999999999999999999999877543

>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]

Probab=95.16  E-value=0.025  Score=51.23  Aligned_cols=36  Identities=25%  Similarity=0.179  Sum_probs=33.1

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCC
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY   39 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~   39 (328)
                      ..+|+|+|-|.+|++||..|.++|.+|++.|.+...
T Consensus         7 ~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~   42 (448)
T COG0771           7 GKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAP   42 (448)
T ss_pred             CCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCc
Confidence            468999999999999999999999999999987665

>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=95.16  E-value=0.028  Score=48.88  Aligned_cols=34  Identities=29%  Similarity=0.444  Sum_probs=31.6

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~   37 (328)
                      .++|.|||+|..|.+.|..|+++|++|+++.++.
T Consensus         4 ~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~   37 (308)
T PRK14619          4 PKTIAILGAGAWGSTLAGLASANGHRVRVWSRRS   37 (308)
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCC
Confidence            4689999999999999999999999999999864

>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

Probab=95.11  E-value=0.029  Score=49.17  Aligned_cols=32  Identities=28%  Similarity=0.359  Sum_probs=30.0

Q ss_pred             cEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (328)
Q Consensus         6 dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~   37 (328)
                      +|.|||+|..|...|..|+++|++|++++++.
T Consensus         3 kI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~   34 (325)
T PRK00094          3 KIAVLGAGSWGTALAIVLARNGHDVTLWARDP   34 (325)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            69999999999999999999999999999853

>PRK12831 putative oxidoreductase; Provisional

Probab=95.11  E-value=0.029  Score=51.79  Aligned_cols=34  Identities=21%  Similarity=0.049  Sum_probs=31.5

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~   38 (328)
                      -+|+|||||.+|+-+|..|++.|.+|+|+++++.
T Consensus       282 k~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~~  315 (464)
T PRK12831        282 KKVAVVGGGNVAMDAARTALRLGAEVHIVYRRSE  315 (464)
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCEEEEEeecCc
Confidence            5899999999999999999999999999998654

>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]

Probab=95.09  E-value=0.025  Score=45.58  Aligned_cols=36  Identities=25%  Similarity=0.379  Sum_probs=32.4

Q ss_pred             CcccEEEECCChhHHHHHHhhhhCCCeEEEeccCCC
Q 020312            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (328)
Q Consensus         3 ~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~   38 (328)
                      +...|.|||+|..|...|...++.|++|.+++++..
T Consensus        10 ~~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~   45 (298)
T KOG2304|consen   10 EIKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANED   45 (298)
T ss_pred             cccceEEEcccccchhHHHHHHhcCCceEEecCCHH
Confidence            346899999999999999999999999999998653

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=95.09  E-value=0.036  Score=45.04  Aligned_cols=33  Identities=21%  Similarity=0.213  Sum_probs=30.2

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEeccC
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRN   36 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~   36 (328)
                      ...|+|||||-+|...|..|.+.|.+|+|+...
T Consensus         9 gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~   41 (205)
T TIGR01470         9 GRAVLVVGGGDVALRKARLLLKAGAQLRVIAEE   41 (205)
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCC
Confidence            358999999999999999999999999999764

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=95.09  E-value=0.034  Score=44.96  Aligned_cols=33  Identities=21%  Similarity=0.248  Sum_probs=30.4

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCC-eEEEeccC
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGL-KVLHMDRN   36 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~-~V~vlE~~   36 (328)
                      ..+|+|||+|..|..+|..|++.|. +++|+|..
T Consensus        21 ~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D   54 (200)
T TIGR02354        21 QATVAICGLGGLGSNVAINLARAGIGKLILVDFD   54 (200)
T ss_pred             CCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence            4689999999999999999999997 69999974

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]

Probab=95.09  E-value=0.02  Score=48.66  Aligned_cols=35  Identities=17%  Similarity=0.258  Sum_probs=30.3

Q ss_pred             CcccEEEECCChhHHHHHHhhhhC-C-CeEEEeccCC
Q 020312            3 EEYDVIVLGTGLKECILSGLLSVD-G-LKVLHMDRND   37 (328)
Q Consensus         3 ~~~dvvIvG~G~aGl~aA~~L~~~-G-~~V~vlE~~~   37 (328)
                      ++++|+|||||.+|+++|..+.++ | -+|.|+|-.+
T Consensus        38 ~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e   74 (446)
T KOG3851|consen   38 KHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAE   74 (446)
T ss_pred             cceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchh
Confidence            578999999999999999999875 4 5799999764

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=95.06  E-value=0.029  Score=40.07  Aligned_cols=33  Identities=27%  Similarity=0.282  Sum_probs=30.1

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEeccC
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRN   36 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~   36 (328)
                      ...|+|||||-.|..-+..|.+.|.+|+|+-..
T Consensus         7 ~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~   39 (103)
T PF13241_consen    7 GKRVLVVGGGPVAARKARLLLEAGAKVTVISPE   39 (103)
T ss_dssp             T-EEEEEEESHHHHHHHHHHCCCTBEEEEEESS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEECCc
Confidence            568999999999999999999999999999875

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=95.05  E-value=0.037  Score=44.81  Aligned_cols=32  Identities=16%  Similarity=0.161  Sum_probs=29.8

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEecc
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDR   35 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~   35 (328)
                      ...|+|||||-.|...|..|.+.|.+|+|++.
T Consensus        10 ~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~   41 (202)
T PRK06718         10 NKRVVIVGGGKVAGRRAITLLKYGAHIVVISP   41 (202)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEEcC
Confidence            46899999999999999999999999999975

>PTZ00082 L-lactate dehydrogenase; Provisional

Probab=95.02  E-value=0.038  Score=48.25  Aligned_cols=38  Identities=18%  Similarity=0.296  Sum_probs=33.1

Q ss_pred             CCCcccEEEECCChhHHHHHHhhhhCCC-eEEEeccCCC
Q 020312            1 MDEEYDVIVLGTGLKECILSGLLSVDGL-KVLHMDRNDY   38 (328)
Q Consensus         1 ~~~~~dvvIvG~G~aGl~aA~~L~~~G~-~V~vlE~~~~   38 (328)
                      |-+..+|+|||+|..|.++|+.|+..|+ +|.|+|.+..
T Consensus         3 ~~~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~   41 (321)
T PTZ00082          3 MIKRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKN   41 (321)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCc
Confidence            3456799999999999999999999995 8999998764

>PRK13748 putative mercuric reductase; Provisional

Probab=94.96  E-value=0.032  Score=52.96  Aligned_cols=33  Identities=21%  Similarity=0.247  Sum_probs=30.8

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~   37 (328)
                      -+++|||||..|+-+|..|++.|.+|+|++++.
T Consensus       271 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~  303 (561)
T PRK13748        271 ERLAVIGSSVVALELAQAFARLGSKVTILARST  303 (561)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCEEEEEecCc
Confidence            479999999999999999999999999999854

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=94.92  E-value=0.031  Score=48.16  Aligned_cols=35  Identities=26%  Similarity=0.220  Sum_probs=32.0

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY   39 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~   39 (328)
                      .+|+|||+|.+|+-+|..|++.|.+|+++++.+..
T Consensus       142 ~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~~~  176 (300)
T TIGR01292       142 KEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRDKF  176 (300)
T ss_pred             CEEEEECCChHHHHHHHHHHhhcCEEEEEEeCccc
Confidence            48999999999999999999999999999997644

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=94.92  E-value=0.048  Score=41.06  Aligned_cols=33  Identities=24%  Similarity=0.363  Sum_probs=29.7

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCe-EEEeccC
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLK-VLHMDRN   36 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~-V~vlE~~   36 (328)
                      ...++|||+|-+|-.+++.|++.|.+ |+|+-|+
T Consensus        12 ~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt   45 (135)
T PF01488_consen   12 GKRVLVIGAGGAARAVAAALAALGAKEITIVNRT   45 (135)
T ss_dssp             TSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESS
T ss_pred             CCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECC
Confidence            46899999999999999999999966 9999873

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=94.90  E-value=0.029  Score=49.85  Aligned_cols=34  Identities=24%  Similarity=0.212  Sum_probs=30.5

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCe-EEEeccCCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLK-VLHMDRNDY   38 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~-V~vlE~~~~   38 (328)
                      -.|+|||+|..|+-+|..|++.|.+ |+|+++.+.
T Consensus       173 ~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~~  207 (352)
T PRK12770        173 KKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRTI  207 (352)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecch
Confidence            4799999999999999999999987 999998654

>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]

Probab=94.89  E-value=0.026  Score=48.93  Aligned_cols=34  Identities=24%  Similarity=0.398  Sum_probs=30.3

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~   38 (328)
                      ++|.|+|+|..|...|++|+++|++|+++=|+++
T Consensus         1 mkI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~   34 (307)
T COG1893           1 MKILILGAGAIGSLLGARLAKAGHDVTLLVRSRR   34 (307)
T ss_pred             CeEEEECCcHHHHHHHHHHHhCCCeEEEEecHHH
Confidence            4699999999999999999999988998877653

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=94.89  E-value=0.026  Score=47.85  Aligned_cols=33  Identities=27%  Similarity=0.264  Sum_probs=31.1

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEeccC
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRN   36 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~   36 (328)
                      .-+|+|||||..|.-+|..+...|-+|+++|.+
T Consensus       168 ~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n  200 (371)
T COG0686         168 PAKVVVLGGGVVGTNAAKIAIGLGADVTILDLN  200 (371)
T ss_pred             CccEEEECCccccchHHHHHhccCCeeEEEecC
Confidence            468999999999999999999999999999997

>PRK06116 glutathione reductase; Validated

Probab=94.85  E-value=0.12  Score=47.57  Aligned_cols=57  Identities=18%  Similarity=0.152  Sum_probs=44.3

Q ss_pred             cHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe-cCceEEcCEEEECCCCCcc
Q 020312          233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLPN  290 (328)
Q Consensus       233 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~-~g~~~~ad~vV~~~~~~~~  290 (328)
                      .+.+.+.+.+++.|++++++++|++|+.+ ++..+.+++ +++++.||.||++++..|+
T Consensus       209 ~~~~~l~~~L~~~GV~i~~~~~V~~i~~~-~~g~~~v~~~~g~~i~~D~Vv~a~G~~p~  266 (450)
T PRK06116        209 DIRETLVEEMEKKGIRLHTNAVPKAVEKN-ADGSLTLTLEDGETLTVDCLIWAIGREPN  266 (450)
T ss_pred             HHHHHHHHHHHHCCcEEECCCEEEEEEEc-CCceEEEEEcCCcEEEeCEEEEeeCCCcC
Confidence            46677778889999999999999999876 333233454 7788999999988776554

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=94.83  E-value=0.035  Score=51.54  Aligned_cols=32  Identities=28%  Similarity=0.320  Sum_probs=30.0

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRN   36 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~   36 (328)
                      -+++|||||..|+-+|..|++.|.+|+|+++.
T Consensus       181 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~  212 (484)
T TIGR01438       181 GKTLVVGASYVALECAGFLAGIGLDVTVMVRS  212 (484)
T ss_pred             CCEEEECCCHHHHHHHHHHHHhCCcEEEEEec
Confidence            47999999999999999999999999999974

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>PRK14727 putative mercuric reductase; Provisional

Probab=94.83  E-value=0.039  Score=51.23  Aligned_cols=33  Identities=15%  Similarity=0.245  Sum_probs=30.5

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~   37 (328)
                      -+++|||||..|+-.|..|++.|.+|+|+++..
T Consensus       189 k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~~  221 (479)
T PRK14727        189 ASLTVIGSSVVAAEIAQAYARLGSRVTILARST  221 (479)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCEEEEEEcCC
Confidence            479999999999999999999999999999753

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=94.76  E-value=0.048  Score=42.20  Aligned_cols=31  Identities=19%  Similarity=0.150  Sum_probs=28.8

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEec
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMD   34 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE   34 (328)
                      ...|+|||||-.|..-|..|.+.|.+|+|+.
T Consensus        13 ~~~vlVvGGG~va~rka~~Ll~~ga~V~VIs   43 (157)
T PRK06719         13 NKVVVIIGGGKIAYRKASGLKDTGAFVTVVS   43 (157)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEc
Confidence            4689999999999999999999999999994

>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated

Probab=94.69  E-value=0.041  Score=51.23  Aligned_cols=33  Identities=15%  Similarity=0.234  Sum_probs=30.6

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~   37 (328)
                      .+|.|||+|..|...|..|+++|++|+|++++.
T Consensus         5 ~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~   37 (495)
T PRK07531          5 MKAACIGGGVIGGGWAARFLLAGIDVAVFDPHP   37 (495)
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence            479999999999999999999999999999863

>TIGR00518 alaDH alanine dehydrogenase

Probab=94.69  E-value=0.044  Score=48.90  Aligned_cols=34  Identities=24%  Similarity=0.213  Sum_probs=31.0

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~   37 (328)
                      ..+|+|||+|.+|+.+|..|...|.+|++++++.
T Consensus       167 ~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~  200 (370)
T TIGR00518       167 PGDVTIIGGGVVGTNAAKMANGLGATVTILDINI  200 (370)
T ss_pred             CceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence            4679999999999999999999999999999853

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=94.68  E-value=0.038  Score=47.33  Aligned_cols=32  Identities=25%  Similarity=0.258  Sum_probs=29.7

Q ss_pred             cEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (328)
Q Consensus         6 dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~   37 (328)
                      +|.|||.|..|.+.|..|+++|++|++++++.
T Consensus         2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~   33 (279)
T PRK07417          2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRE   33 (279)
T ss_pred             eEEEEeecHHHHHHHHHHHHCCCEEEEEECCH
Confidence            69999999999999999999999999999853

>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC

Probab=94.68  E-value=0.038  Score=51.35  Aligned_cols=33  Identities=24%  Similarity=0.317  Sum_probs=30.8

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~   37 (328)
                      .+|.|||+|..|...|..|+++|++|+++|++.
T Consensus         6 ~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~   38 (503)
T TIGR02279         6 VTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRA   38 (503)
T ss_pred             cEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence            469999999999999999999999999999874

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.

>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.66  E-value=0.04  Score=50.88  Aligned_cols=33  Identities=30%  Similarity=0.390  Sum_probs=30.8

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~   37 (328)
                      .+|.|+|.|.+|+++|..|.+.|++|++.|+++
T Consensus        15 ~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~   47 (458)
T PRK01710         15 KKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKS   47 (458)
T ss_pred             CeEEEEcccHHHHHHHHHHHHCCCEEEEECCCC
Confidence            479999999999999999999999999999865

>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated

Probab=94.65  E-value=0.047  Score=50.90  Aligned_cols=34  Identities=24%  Similarity=0.257  Sum_probs=31.3

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~   38 (328)
                      ..|.|||+|..|...|..|+++|++|+++|++..
T Consensus         8 ~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e   41 (507)
T PRK08268          8 ATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAG   41 (507)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence            5699999999999999999999999999998753

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=94.65  E-value=0.045  Score=48.56  Aligned_cols=32  Identities=25%  Similarity=0.424  Sum_probs=30.4

Q ss_pred             ccEEEECCChhHHHHHHhhhhCC-CeEEEeccC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDG-LKVLHMDRN   36 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G-~~V~vlE~~   36 (328)
                      .+|+|||+|-.|.++|+.|++.| .+|+|-+|+
T Consensus         2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs   34 (389)
T COG1748           2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRS   34 (389)
T ss_pred             CcEEEECCchhHHHHHHHHHhCCCceEEEEeCC
Confidence            38999999999999999999999 999999997

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=94.61  E-value=0.047  Score=42.61  Aligned_cols=31  Identities=23%  Similarity=0.313  Sum_probs=27.7

Q ss_pred             cEEEECCChhHHHHHHhhhhCCCeEEEeccC
Q 020312            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRN   36 (328)
Q Consensus         6 dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~   36 (328)
                      +|.|||-|..|...|..|.++|++|.+++++
T Consensus         3 ~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~   33 (163)
T PF03446_consen    3 KIGFIGLGNMGSAMARNLAKAGYEVTVYDRS   33 (163)
T ss_dssp             EEEEE--SHHHHHHHHHHHHTTTEEEEEESS
T ss_pred             EEEEEchHHHHHHHHHHHHhcCCeEEeeccc
Confidence            7999999999999999999999999999974

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>PRK15057 UDP-glucose 6-dehydrogenase; Provisional

Probab=94.52  E-value=0.044  Score=49.23  Aligned_cols=31  Identities=19%  Similarity=0.204  Sum_probs=28.1

Q ss_pred             cEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (328)
Q Consensus         6 dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~   37 (328)
                      +|.|||.|..|+..|..|+. |++|+++|.+.
T Consensus         2 kI~VIGlGyvGl~~A~~lA~-G~~VigvD~d~   32 (388)
T PRK15057          2 KITISGTGYVGLSNGLLIAQ-NHEVVALDILP   32 (388)
T ss_pred             EEEEECCCHHHHHHHHHHHh-CCcEEEEECCH
Confidence            69999999999999988885 99999999864

>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E

Probab=94.50  E-value=0.14  Score=48.52  Aligned_cols=54  Identities=15%  Similarity=0.224  Sum_probs=44.7

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe----cCc--eEEcCEEEECCC
Q 020312          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS----EGE--TAKCKKVVCDPS  286 (328)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~----~g~--~~~ad~vV~~~~  286 (328)
                      ..|.+.|.+.+++.|++|+.+++|+++..+ +|+++|+..    +++  .+.|+.||++.+
T Consensus       119 ~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~-~g~v~Ga~~~~~~~g~~~~i~AkaVILATG  178 (565)
T TIGR01816       119 HAILHTLYQQNLKADTSFFNEYFALDLLME-DGECRGVIAYCLETGEIHRFRAKAVVLATG  178 (565)
T ss_pred             HHHHHHHHHHHHhCCCEEEeccEEEEEEee-CCEEEEEEEEEcCCCcEEEEEeCeEEECCC
Confidence            468999999888899999999999999987 889999875    343  478999886543

coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.

>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.49  E-value=0.043  Score=50.72  Aligned_cols=34  Identities=12%  Similarity=-0.152  Sum_probs=31.0

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~   38 (328)
                      .+|+|+|.|.+|.++|..|.+.|.+|++.|.++.
T Consensus         9 ~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~~   42 (468)
T PRK04690          9 RRVALWGWGREGRAAYRALRAHLPAQALTLFCNA   42 (468)
T ss_pred             CEEEEEccchhhHHHHHHHHHcCCEEEEEcCCCc
Confidence            4799999999999999999999999999997543

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=94.44  E-value=0.051  Score=49.62  Aligned_cols=36  Identities=19%  Similarity=0.243  Sum_probs=31.4

Q ss_pred             cEEEECCChhHHHHHHhhhh--------------CCCeEEEeccCCCCCC
Q 020312            6 DVIVLGTGLKECILSGLLSV--------------DGLKVLHMDRNDYYGG   41 (328)
Q Consensus         6 dvvIvG~G~aGl~aA~~L~~--------------~G~~V~vlE~~~~~GG   41 (328)
                      .++|||||.+|+-.|.+|++              .|.+|+|+|+++++..
T Consensus       175 ~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll~  224 (424)
T PTZ00318        175 HFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVLG  224 (424)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCcccc
Confidence            79999999999999999985              4789999999876543

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=94.43  E-value=0.047  Score=50.39  Aligned_cols=34  Identities=21%  Similarity=0.128  Sum_probs=31.0

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCC-eEEEeccCCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGL-KVLHMDRNDY   38 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~-~V~vlE~~~~   38 (328)
                      -+|+|||||.+|+-+|..|++.|. +|+++++++.
T Consensus       274 ~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~~  308 (457)
T PRK11749        274 KRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRGR  308 (457)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCc
Confidence            589999999999999999999997 8999998654

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=94.43  E-value=0.045  Score=50.36  Aligned_cols=33  Identities=12%  Similarity=0.242  Sum_probs=29.0

Q ss_pred             ccEEEECCChhHHHHHHhhhhCC--CeEEEeccCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDG--LKVLHMDRND   37 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G--~~V~vlE~~~   37 (328)
                      ++|+|||.|..|+..|..|+++|  ++|+.+|.+.
T Consensus         2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~   36 (473)
T PLN02353          2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISV   36 (473)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCH
Confidence            36999999999999999999985  8899998653

>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]

Probab=94.41  E-value=0.12  Score=46.51  Aligned_cols=58  Identities=21%  Similarity=0.264  Sum_probs=49.5

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe-cCceEEcCEEEECCCCCc
Q 020312          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLP  289 (328)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~-~g~~~~ad~vV~~~~~~~  289 (328)
                      ..+-+.+.+.++++|+++.+++.+.++.-+.+|+++-|.+ ++.++.||.||+..+..|
T Consensus       255 ~~i~~~~~~y~e~kgVk~~~~t~~s~l~~~~~Gev~~V~l~dg~~l~adlvv~GiG~~p  313 (478)
T KOG1336|consen  255 PSIGQFYEDYYENKGVKFYLGTVVSSLEGNSDGEVSEVKLKDGKTLEADLVVVGIGIKP  313 (478)
T ss_pred             HHHHHHHHHHHHhcCeEEEEecceeecccCCCCcEEEEEeccCCEeccCeEEEeecccc
Confidence            3566777788899999999999999999886789998888 899999999998766544

>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional

Probab=94.38  E-value=0.047  Score=50.44  Aligned_cols=35  Identities=23%  Similarity=0.140  Sum_probs=31.1

Q ss_pred             cccEEEECCChhHHH-HHHhhhhCCCeEEEeccCCC
Q 020312            4 EYDVIVLGTGLKECI-LSGLLSVDGLKVLHMDRNDY   38 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~-aA~~L~~~G~~V~vlE~~~~   38 (328)
                      ..+|.|||.|-+|++ +|..|.++|++|++.|.+..
T Consensus         7 ~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~   42 (461)
T PRK00421          7 IKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKES   42 (461)
T ss_pred             CCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCC
Confidence            357999999999999 69999999999999998653

>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.37  E-value=0.061  Score=49.46  Aligned_cols=36  Identities=19%  Similarity=0.194  Sum_probs=32.1

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCC
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY   39 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~   39 (328)
                      ...++|+|.|.+|+++|..|+++|.+|++.|..+..
T Consensus         5 ~~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~~   40 (445)
T PRK04308          5 NKKILVAGLGGTGISMIAYLRKNGAEVAAYDAELKP   40 (445)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCc
Confidence            357999999999999999999999999999976543

>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []

Probab=94.36  E-value=0.076  Score=40.32  Aligned_cols=33  Identities=27%  Similarity=0.444  Sum_probs=29.5

Q ss_pred             ccEEEECC-ChhHHHHHHhhhhCC--CeEEEeccCC
Q 020312            5 YDVIVLGT-GLKECILSGLLSVDG--LKVLHMDRND   37 (328)
Q Consensus         5 ~dvvIvG~-G~aGl~aA~~L~~~G--~~V~vlE~~~   37 (328)
                      ++|+|||+ |..|.+.|+.|.+.|  .++.+++.+.
T Consensus         1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~   36 (141)
T PF00056_consen    1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINE   36 (141)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSH
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCc
Confidence            47999999 999999999999987  5799999863

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=94.32  E-value=0.074  Score=38.69  Aligned_cols=31  Identities=26%  Similarity=0.474  Sum_probs=27.8

Q ss_pred             EEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312            7 VIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (328)
Q Consensus         7 vvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~   37 (328)
                      |+|+|.|-.|...|..|.+.+.+|+++|.+.
T Consensus         1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~   31 (116)
T PF02254_consen    1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDP   31 (116)
T ss_dssp             EEEES-SHHHHHHHHHHHHTTSEEEEEESSH
T ss_pred             eEEEcCCHHHHHHHHHHHhCCCEEEEEECCc
Confidence            6899999999999999999878999999864

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=94.32  E-value=0.16  Score=48.22  Aligned_cols=56  Identities=21%  Similarity=0.365  Sum_probs=44.0

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe--cCc--eEEcCE-EEE-CCCCC
Q 020312          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS--EGE--TAKCKK-VVC-DPSYL  288 (328)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~--~g~--~~~ad~-vV~-~~~~~  288 (328)
                      ..+...|.+.+++.|++++++++|++|..+ +++|++|..  +++  .+.|++ ||+ +.++.
T Consensus       208 ~~~~~~L~~~~~~~gv~v~~~t~v~~l~~~-~g~v~Gv~~~~~g~~~~i~A~~~VIlAtGG~~  269 (557)
T PRK07843        208 QALAAGLRIGLQRAGVPVLLNTPLTDLYVE-DGRVTGVHAAESGEPQLIRARRGVILASGGFE  269 (557)
T ss_pred             HHHHHHHHHHHHcCCCEEEeCCEEEEEEEe-CCEEEEEEEEeCCcEEEEEeceeEEEccCCcC
Confidence            457788888888899999999999999987 788888876  443  478874 776 55553

>TIGR01915 npdG NADPH-dependent F420 reductase

Probab=94.25  E-value=0.062  Score=44.23  Aligned_cols=32  Identities=31%  Similarity=0.286  Sum_probs=28.9

Q ss_pred             cEEEEC-CChhHHHHHHhhhhCCCeEEEeccCC
Q 020312            6 DVIVLG-TGLKECILSGLLSVDGLKVLHMDRND   37 (328)
Q Consensus         6 dvvIvG-~G~aGl~aA~~L~~~G~~V~vlE~~~   37 (328)
                      +|.||| +|..|.+.|..|+++|++|+++.++.
T Consensus         2 kI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~   34 (219)
T TIGR01915         2 KIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDL   34 (219)
T ss_pred             EEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCH
Confidence            699997 79999999999999999999997753

This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.

>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.20  E-value=0.057  Score=50.25  Aligned_cols=32  Identities=22%  Similarity=0.253  Sum_probs=29.8

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRN   36 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~   36 (328)
                      ..|+|+|.|.+|++++..|.+.|.+|++.|.+
T Consensus        13 ~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~   44 (488)
T PRK03369         13 APVLVAGAGVTGRAVLAALTRFGARPTVCDDD   44 (488)
T ss_pred             CeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence            47999999999999999999999999999964

>PRK00066 ldh L-lactate dehydrogenase; Reviewed

Probab=94.17  E-value=0.082  Score=46.08  Aligned_cols=34  Identities=21%  Similarity=0.355  Sum_probs=30.8

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCC--eEEEeccCC
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGL--KVLHMDRND   37 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~--~V~vlE~~~   37 (328)
                      ..+|+|||+|-.|.++|+.|+..|.  ++.|+|.+.
T Consensus         6 ~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~   41 (315)
T PRK00066          6 HNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINK   41 (315)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence            4799999999999999999999996  899999853

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=94.10  E-value=0.056  Score=52.67  Aligned_cols=34  Identities=24%  Similarity=0.260  Sum_probs=31.2

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~   38 (328)
                      ..|+|||+|..|...|..++.+|++|+++|.++.
T Consensus       314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~  347 (715)
T PRK11730        314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQK  347 (715)
T ss_pred             ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHH
Confidence            3699999999999999999999999999998753

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=94.07  E-value=0.09  Score=42.54  Aligned_cols=32  Identities=31%  Similarity=0.301  Sum_probs=30.0

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRN   36 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~   36 (328)
                      ..++|+|.|-.|..+|..|.+.|.+|++.+.+
T Consensus        29 k~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~   60 (200)
T cd01075          29 KTVAVQGLGKVGYKLAEHLLEEGAKLIVADIN   60 (200)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence            57999999999999999999999999999875

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.04  E-value=0.061  Score=49.49  Aligned_cols=33  Identities=27%  Similarity=0.229  Sum_probs=30.4

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~   37 (328)
                      ..++|+|+|-+|+++|..|+++|.+|++.|++.
T Consensus         6 k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~   38 (447)
T PRK02472          6 KKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKP   38 (447)
T ss_pred             CEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence            468999999999999999999999999999754

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=94.03  E-value=0.23  Score=46.20  Aligned_cols=44  Identities=18%  Similarity=0.258  Sum_probs=38.9

Q ss_pred             CcccEEEECCChhHHHHHHhhhhC-CCeEEEeccC--------CCCCCccccc
Q 020312            3 EEYDVIVLGTGLKECILSGLLSVD-GLKVLHMDRN--------DYYGGESSSL   46 (328)
Q Consensus         3 ~~~dvvIvG~G~aGl~aA~~L~~~-G~~V~vlE~~--------~~~GG~~~s~   46 (328)
                      .+||++|||||.+|..||..++++ |.+|+|+|+.        +.+||.|-..
T Consensus         2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~~~~~~~~~~~~GGtCln~   54 (486)
T TIGR01423         2 KAFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQTHHGPPHYAALGGTCVNV   54 (486)
T ss_pred             CccCEEEECCChHHHHHHHHHHHhcCCEEEEEecccCccccccCCccCeecCc
Confidence            579999999999999999999997 9999999984        5789977543

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB

Probab=93.98  E-value=0.062  Score=52.30  Aligned_cols=33  Identities=21%  Similarity=0.245  Sum_probs=30.8

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~   37 (328)
                      ..|.|||+|..|...|..++.+|++|+++|.+.
T Consensus       314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~  346 (714)
T TIGR02437       314 KQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQ  346 (714)
T ss_pred             ceEEEECCchHHHHHHHHHHhCCCeEEEEeCCH
Confidence            469999999999999999999999999999864

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.

>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]

Probab=93.96  E-value=0.063  Score=46.13  Aligned_cols=33  Identities=21%  Similarity=0.394  Sum_probs=30.7

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~   37 (328)
                      ..|.|||||..|-..|+.++..|++|+++|.+.
T Consensus         4 ~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~~   36 (307)
T COG1250           4 KKVAVIGAGVMGAGIAAVFALAGYDVVLKDISP   36 (307)
T ss_pred             cEEEEEcccchhHHHHHHHhhcCCceEEEeCCH
Confidence            579999999999999999999889999999973

>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins

Probab=93.94  E-value=0.13  Score=35.26  Aligned_cols=32  Identities=38%  Similarity=0.453  Sum_probs=29.3

Q ss_pred             cccEEEECCChhHHHHHHhhhhC-CCeEEEecc
Q 020312            4 EYDVIVLGTGLKECILSGLLSVD-GLKVLHMDR   35 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~-G~~V~vlE~   35 (328)
                      ..+++|+|.|..|..+|..|.+. +.+|.++++
T Consensus        23 ~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r   55 (86)
T cd05191          23 GKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR   55 (86)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence            46899999999999999999998 688999988

Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al

>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional

Probab=93.93  E-value=0.08  Score=47.37  Aligned_cols=35  Identities=20%  Similarity=0.494  Sum_probs=31.6

Q ss_pred             CcccEEEEC-CChhHHHHHHhhhhCCCeEEEeccCC
Q 020312            3 EEYDVIVLG-TGLKECILSGLLSVDGLKVLHMDRND   37 (328)
Q Consensus         3 ~~~dvvIvG-~G~aGl~aA~~L~~~G~~V~vlE~~~   37 (328)
                      ....|+||| .|..|-+.|..|.++|++|+++++++
T Consensus        97 ~~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~  132 (374)
T PRK11199         97 DLRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDD  132 (374)
T ss_pred             ccceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCc
Confidence            346899999 89999999999999999999999864

>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.92  E-value=0.069  Score=48.65  Aligned_cols=33  Identities=27%  Similarity=0.469  Sum_probs=30.5

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~   37 (328)
                      .+|+|||-|.+|+++|..|.++|.+|++.|.+.
T Consensus         4 ~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~   36 (418)
T PRK00683          4 QRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSL   36 (418)
T ss_pred             CeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            479999999999999999999999999999754

>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]

Probab=93.92  E-value=0.05  Score=46.94  Aligned_cols=34  Identities=18%  Similarity=-0.030  Sum_probs=28.8

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~   37 (328)
                      ..||+|||||-+|.-||..|+--=..|+|||=.+
T Consensus       354 gK~VAVIGGGNSGvEAAIDLAGiv~hVtllEF~~  387 (520)
T COG3634         354 GKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAP  387 (520)
T ss_pred             CceEEEECCCcchHHHHHhHHhhhheeeeeecch
Confidence            4699999999999999999984447899999543

>PRK06223 malate dehydrogenase; Reviewed

Probab=93.90  E-value=0.082  Score=45.98  Aligned_cols=34  Identities=24%  Similarity=0.357  Sum_probs=30.2

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCC-eEEEeccCCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGL-KVLHMDRNDY   38 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~-~V~vlE~~~~   38 (328)
                      .+|+|||+|..|.+.|+.|+..|. +|.++|.+..
T Consensus         3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~   37 (307)
T PRK06223          3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVEG   37 (307)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCc
Confidence            489999999999999999999876 9999998543

>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases

Probab=93.83  E-value=0.099  Score=45.48  Aligned_cols=36  Identities=17%  Similarity=0.182  Sum_probs=31.2

Q ss_pred             CCcccEEEECCChhHHHHHHhhhhCC--CeEEEeccCC
Q 020312            2 DEEYDVIVLGTGLKECILSGLLSVDG--LKVLHMDRND   37 (328)
Q Consensus         2 ~~~~dvvIvG~G~aGl~aA~~L~~~G--~~V~vlE~~~   37 (328)
                      +++.+|+|||+|-.|.++|+.|+..|  .++.|+|.+.
T Consensus         1 ~~~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~   38 (312)
T cd05293           1 KPRNKVTVVGVGQVGMACAISILAKGLADELVLVDVVE   38 (312)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence            34679999999999999999999888  4799999754

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=93.83  E-value=0.083  Score=45.93  Aligned_cols=32  Identities=22%  Similarity=0.377  Sum_probs=29.5

Q ss_pred             cEEEECCChhHHHHHHhhhhCC--CeEEEeccCC
Q 020312            6 DVIVLGTGLKECILSGLLSVDG--LKVLHMDRND   37 (328)
Q Consensus         6 dvvIvG~G~aGl~aA~~L~~~G--~~V~vlE~~~   37 (328)
                      +|+|||+|..|.++|+.|+..|  .++.+++++.
T Consensus         2 kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~   35 (306)
T cd05291           2 KVVIIGAGHVGSSFAYSLVNQGIADELVLIDINE   35 (306)
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence            6999999999999999999999  6899999864

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>PLN02507 glutathione reductase

Probab=93.75  E-value=0.26  Score=46.05  Aligned_cols=42  Identities=21%  Similarity=0.237  Sum_probs=37.9

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEecc---------CCCCCCcccc
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDR---------NDYYGGESSS   45 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~---------~~~~GG~~~s   45 (328)
                      +||++|||||.+|+.||..+++.|.+|+|+|+         .+.+||.|..
T Consensus        25 ~yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~~~~~~~~~~~~~~GGtc~n   75 (499)
T PLN02507         25 DFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSESIGGVGGTCVI   75 (499)
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCcccccccCCCccceeec
Confidence            58999999999999999999999999999996         3678998744

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=93.70  E-value=0.071  Score=49.35  Aligned_cols=34  Identities=24%  Similarity=0.279  Sum_probs=30.8

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~   37 (328)
                      .-+|+|+|+|.+||.|+..++..|.+|.++|.++
T Consensus       165 g~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~  198 (509)
T PRK09424        165 PAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRP  198 (509)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            4689999999999999999999999999998754

>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.68  E-value=0.092  Score=48.18  Aligned_cols=34  Identities=18%  Similarity=0.268  Sum_probs=30.9

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~   37 (328)
                      ..+|.|+|-|.+|++++..|.++|.+|++.|...
T Consensus         6 ~~~i~v~G~G~sG~s~~~~l~~~G~~v~~~D~~~   39 (438)
T PRK03806          6 GKKVVIIGLGLTGLSCVDFFLARGVTPRVIDTRI   39 (438)
T ss_pred             CCEEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCC
Confidence            3579999999999999999999999999999754

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=93.65  E-value=0.087  Score=47.46  Aligned_cols=34  Identities=18%  Similarity=0.090  Sum_probs=31.0

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~   37 (328)
                      .-.|+|+|.|..|+.+|..|+..|.+|+++|.++
T Consensus       202 GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~  235 (413)
T cd00401         202 GKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDP  235 (413)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCh
Confidence            3579999999999999999999999999999864

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional

Probab=93.64  E-value=0.078  Score=52.63  Aligned_cols=37  Identities=19%  Similarity=0.108  Sum_probs=33.1

Q ss_pred             CCCcccEEEECCChhHHHH-HHhhhhCCCeEEEeccCC
Q 020312            1 MDEEYDVIVLGTGLKECIL-SGLLSVDGLKVLHMDRND   37 (328)
Q Consensus         1 ~~~~~dvvIvG~G~aGl~a-A~~L~~~G~~V~vlE~~~   37 (328)
                      |++-..+.|||-|-+|+++ |..|.++|++|++.|.+.
T Consensus         1 ~~~~~~i~viG~G~sG~salA~~L~~~G~~V~~sD~~~   38 (809)
T PRK14573          1 MMKSLFYHFIGIGGIGMSALAHILLDRGYSVSGSDLSE   38 (809)
T ss_pred             CCCcceEEEEEecHHhHHHHHHHHHHCCCeEEEECCCC
Confidence            5655679999999999999 999999999999999764

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=93.57  E-value=0.09  Score=51.76  Aligned_cols=34  Identities=21%  Similarity=0.085  Sum_probs=31.0

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCe-EEEeccCCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLK-VLHMDRNDY   38 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~-V~vlE~~~~   38 (328)
                      -+|+|||||.+|+-+|..|.+.|.+ |+|+++++.
T Consensus       571 k~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~~  605 (752)
T PRK12778        571 KKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRSE  605 (752)
T ss_pred             CcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCc
Confidence            4799999999999999999999987 999998654

>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.55  E-value=0.098  Score=48.18  Aligned_cols=36  Identities=22%  Similarity=0.299  Sum_probs=31.7

Q ss_pred             CCcccEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312            2 DEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (328)
Q Consensus         2 ~~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~   37 (328)
                      ...--|+|||.|-+|+++|..|.++|++|++.|...
T Consensus         4 ~~~~~~~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~   39 (448)
T PRK03803          4 QSDGLHIVVGLGKTGLSVVRFLARQGIPFAVMDSRE   39 (448)
T ss_pred             ccCCeEEEEeecHhHHHHHHHHHhCCCeEEEEeCCC
Confidence            334568999999999999999999999999999764

>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial

Probab=93.49  E-value=0.073  Score=51.98  Aligned_cols=34  Identities=26%  Similarity=0.306  Sum_probs=31.1

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~   38 (328)
                      ..|.|||+|..|...|..++.+|++|+++|.++.
T Consensus       336 ~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~  369 (737)
T TIGR02441       336 KTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPA  369 (737)
T ss_pred             cEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHH
Confidence            4699999999999999999999999999998653

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=93.44  E-value=0.11  Score=45.64  Aligned_cols=34  Identities=26%  Similarity=0.376  Sum_probs=30.9

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCC-eEEEeccCC
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGL-KVLHMDRND   37 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~-~V~vlE~~~   37 (328)
                      +..|+|||+|-.|..+|..|++.|. +++|+|...
T Consensus        24 ~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~   58 (338)
T PRK12475         24 EKHVLIVGAGALGAANAEALVRAGIGKLTIADRDY   58 (338)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence            4689999999999999999999997 899999864

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=93.44  E-value=0.11  Score=45.65  Aligned_cols=33  Identities=30%  Similarity=0.485  Sum_probs=30.7

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCC-eEEEeccC
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGL-KVLHMDRN   36 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~-~V~vlE~~   36 (328)
                      +.+|+|||+|-.|..+|..|+..|. +++|+|..
T Consensus        24 ~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D   57 (339)
T PRK07688         24 EKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRD   57 (339)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            5789999999999999999999997 89999985

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=93.43  E-value=0.12  Score=43.60  Aligned_cols=36  Identities=19%  Similarity=0.239  Sum_probs=32.2

Q ss_pred             cccEEEECCChhHHHHHHhhhhCC-CeEEEeccCCCC
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDG-LKVLHMDRNDYY   39 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G-~~V~vlE~~~~~   39 (328)
                      +..|+|||.|-.|..+|..|++.| .+++|+|....-
T Consensus        30 ~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V~   66 (268)
T PRK15116         30 DAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDVC   66 (268)
T ss_pred             CCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEec
Confidence            578999999999999999999999 789999986543

>PRK14694 putative mercuric reductase; Provisional

Probab=93.37  E-value=0.34  Score=44.88  Aligned_cols=41  Identities=20%  Similarity=0.319  Sum_probs=37.3

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCcccc
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSS   45 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~s   45 (328)
                      +|||+|||||++|++||..|++.|++|+|+|+. .+||.|..
T Consensus         6 ~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~-~~GGtc~n   46 (468)
T PRK14694          6 NLHIAVIGSGGSAMAAALKATERGARVTLIERG-TIGGTCVN   46 (468)
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCcEEEEEcc-ccccceec
Confidence            599999999999999999999999999999986 68887643

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=93.36  E-value=0.11  Score=44.54  Aligned_cols=33  Identities=21%  Similarity=0.277  Sum_probs=29.8

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCC-eEEEeccCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGL-KVLHMDRND   37 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~-~V~vlE~~~   37 (328)
                      .+|+|||+|-+|-++|+.|++.|. +|+|++++.
T Consensus       128 k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~  161 (284)
T PRK12549        128 ERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDP  161 (284)
T ss_pred             CEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCH
Confidence            479999999999999999999996 799998853

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=93.36  E-value=0.12  Score=44.59  Aligned_cols=34  Identities=29%  Similarity=0.307  Sum_probs=31.5

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~   37 (328)
                      ..+|+|||.|.+|..+|..|+..|.+|++++++.
T Consensus       152 g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~  185 (296)
T PRK08306        152 GSNVLVLGFGRTGMTLARTLKALGANVTVGARKS  185 (296)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            4689999999999999999999999999999863

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=93.33  E-value=0.11  Score=42.84  Aligned_cols=34  Identities=21%  Similarity=0.428  Sum_probs=30.5

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCC---eEEEeccCC
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGL---KVLHMDRND   37 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~---~V~vlE~~~   37 (328)
                      ..+++|+|+|-+|..+|..|.+.|.   +|.|+++..
T Consensus        25 ~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~g   61 (226)
T cd05311          25 EVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKG   61 (226)
T ss_pred             CCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCC
Confidence            4589999999999999999999996   599999973

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.27  E-value=0.096  Score=48.93  Aligned_cols=33  Identities=21%  Similarity=0.267  Sum_probs=30.5

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~   37 (328)
                      ..|.|+|.|.+|+++|..|.++|++|.+.|.+.
T Consensus         8 ~~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~   40 (498)
T PRK02006          8 PMVLVLGLGESGLAMARWCARHGARLRVADTRE   40 (498)
T ss_pred             CEEEEEeecHhHHHHHHHHHHCCCEEEEEcCCC
Confidence            469999999999999999999999999999754

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=93.27  E-value=0.12  Score=38.83  Aligned_cols=33  Identities=21%  Similarity=0.375  Sum_probs=29.3

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCC-eEEEeccC
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGL-KVLHMDRN   36 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~-~V~vlE~~   36 (328)
                      +.+|+|+|+|-.|...|..|++.|. +++|+|..
T Consensus         2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d   35 (135)
T PF00899_consen    2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDD   35 (135)
T ss_dssp             T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESS
T ss_pred             CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCc
Confidence            4689999999999999999999996 79999973

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins

Probab=93.26  E-value=0.099  Score=45.31  Aligned_cols=31  Identities=26%  Similarity=0.469  Sum_probs=28.4

Q ss_pred             EEEECCChhHHHHHHhhhhCCC-eEEEeccCC
Q 020312            7 VIVLGTGLKECILSGLLSVDGL-KVLHMDRND   37 (328)
Q Consensus         7 vvIvG~G~aGl~aA~~L~~~G~-~V~vlE~~~   37 (328)
                      |+|||+|..|.++|+.|+.+|. +|+++|.+.
T Consensus         1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e   32 (300)
T cd01339           1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVE   32 (300)
T ss_pred             CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCC
Confidence            5799999999999999999887 999999874

Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas

>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.23  E-value=0.12  Score=47.98  Aligned_cols=32  Identities=31%  Similarity=0.377  Sum_probs=29.9

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRN   36 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~   36 (328)
                      ..|.|+|.|.+|+++|..|.+.|.+|++.|+.
T Consensus        16 ~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~   47 (473)
T PRK00141         16 GRVLVAGAGVSGRGIAAMLSELGCDVVVADDN   47 (473)
T ss_pred             CeEEEEccCHHHHHHHHHHHHCCCEEEEECCC
Confidence            46999999999999999999999999999964

>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.17  E-value=0.11  Score=47.75  Aligned_cols=32  Identities=19%  Similarity=0.141  Sum_probs=28.9

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEeccC
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRN   36 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~   36 (328)
                      ..+|+|+|.|.+|.++|..|.+ |.+|+|.|.+
T Consensus         6 ~~~v~v~G~G~sG~a~~~~L~~-g~~v~v~D~~   37 (454)
T PRK01368          6 KQKIGVFGLGKTGISVYEELQN-KYDVIVYDDL   37 (454)
T ss_pred             CCEEEEEeecHHHHHHHHHHhC-CCEEEEECCC
Confidence            3589999999999999999995 9999999954

>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3

Probab=93.13  E-value=0.12  Score=39.77  Aligned_cols=34  Identities=21%  Similarity=0.164  Sum_probs=27.5

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~   37 (328)
                      -..++|+|-|..|-.+|..|+..|-+|+|.|..+
T Consensus        23 Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DP   56 (162)
T PF00670_consen   23 GKRVVVIGYGKVGKGIARALRGLGARVTVTEIDP   56 (162)
T ss_dssp             TSEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSH
T ss_pred             CCEEEEeCCCcccHHHHHHHhhCCCEEEEEECCh
Confidence            3579999999999999999999999999999865

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=93.13  E-value=0.28  Score=32.94  Aligned_cols=38  Identities=18%  Similarity=0.072  Sum_probs=30.5

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe
Q 020312          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS  271 (328)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~  271 (328)
                      ..+.+.+.+.+++.|+++++++.|++|..+ ++.+. |++
T Consensus        40 ~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~-~~~~~-V~~   77 (80)
T PF00070_consen   40 PDAAKILEEYLRKRGVEVHTNTKVKEIEKD-GDGVE-VTL   77 (80)
T ss_dssp             HHHHHHHHHHHHHTTEEEEESEEEEEEEEE-TTSEE-EEE
T ss_pred             HHHHHHHHHHHHHCCCEEEeCCEEEEEEEe-CCEEE-EEE
Confidence            346667778889999999999999999998 44455 665

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A

Probab=93.10  E-value=0.13  Score=38.75  Aligned_cols=31  Identities=23%  Similarity=0.425  Sum_probs=27.2

Q ss_pred             EEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312            7 VIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (328)
Q Consensus         7 vvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~   37 (328)
                      ++|+|+|..+...|..++..|++|+|+|-+.
T Consensus         1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~   31 (136)
T PF13478_consen    1 LVIFGAGHVARALARLAALLGFRVTVVDPRP   31 (136)
T ss_dssp             EEEES-STCHHHHHHHHHHCTEEEEEEES-C
T ss_pred             CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCc
Confidence            5899999999999999999999999999874

>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase

Probab=93.09  E-value=0.11  Score=44.78  Aligned_cols=32  Identities=19%  Similarity=0.164  Sum_probs=29.7

Q ss_pred             cEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (328)
Q Consensus         6 dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~   37 (328)
                      +|.|||.|..|...|..|++.|++|++++++.
T Consensus         1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~   32 (291)
T TIGR01505         1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGP   32 (291)
T ss_pred             CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCH
Confidence            48899999999999999999999999999864

This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=93.04  E-value=0.16  Score=40.84  Aligned_cols=33  Identities=27%  Similarity=0.371  Sum_probs=29.5

Q ss_pred             cccEEEECC-ChhHHHHHHhhhhCCCeEEEeccC
Q 020312            4 EYDVIVLGT-GLKECILSGLLSVDGLKVLHMDRN   36 (328)
Q Consensus         4 ~~dvvIvG~-G~aGl~aA~~L~~~G~~V~vlE~~   36 (328)
                      ..+++|+|| |-.|..+|..|++.|.+|+++.++
T Consensus        28 ~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~   61 (194)
T cd01078          28 GKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRD   61 (194)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence            357999997 999999999999999999999764

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>PTZ00117 malate dehydrogenase; Provisional

Probab=93.03  E-value=0.15  Score=44.58  Aligned_cols=35  Identities=14%  Similarity=0.161  Sum_probs=31.4

Q ss_pred             CcccEEEECCChhHHHHHHhhhhCC-CeEEEeccCC
Q 020312            3 EEYDVIVLGTGLKECILSGLLSVDG-LKVLHMDRND   37 (328)
Q Consensus         3 ~~~dvvIvG~G~aGl~aA~~L~~~G-~~V~vlE~~~   37 (328)
                      +..+|+|||+|-.|.++|+.|+..| .++.++|.+.
T Consensus         4 ~~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~   39 (319)
T PTZ00117          4 KRKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIK   39 (319)
T ss_pred             CCcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCC
Confidence            4579999999999999999999999 6899999864

>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=93.03  E-value=0.11  Score=50.73  Aligned_cols=33  Identities=33%  Similarity=0.257  Sum_probs=30.3

Q ss_pred             ccEEEECCChhHHHHHHhhh-hCCCeEEEeccCC
Q 020312            5 YDVIVLGTGLKECILSGLLS-VDGLKVLHMDRND   37 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~-~~G~~V~vlE~~~   37 (328)
                      ..|+|||+|..|...|..++ .+|++|+++|.+.
T Consensus       310 ~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~  343 (708)
T PRK11154        310 NKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINP  343 (708)
T ss_pred             cEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCH
Confidence            46999999999999999999 8899999999864

>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ

Probab=93.01  E-value=0.098  Score=50.87  Aligned_cols=33  Identities=27%  Similarity=0.279  Sum_probs=30.0

Q ss_pred             ccEEEECCChhHHHHHHhhh-hCCCeEEEeccCC
Q 020312            5 YDVIVLGTGLKECILSGLLS-VDGLKVLHMDRND   37 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~-~~G~~V~vlE~~~   37 (328)
                      ..|.|||+|..|...|..++ ++|++|+++|.++
T Consensus       305 ~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~  338 (699)
T TIGR02440       305 KKVGILGGGLMGGGIASVTATKAGIPVRIKDINP  338 (699)
T ss_pred             cEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCH
Confidence            36999999999999999998 5899999999875

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=92.88  E-value=0.13  Score=47.41  Aligned_cols=32  Identities=25%  Similarity=0.396  Sum_probs=30.2

Q ss_pred             cEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (328)
Q Consensus         6 dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~   37 (328)
                      +|+|+|+|..|...|..|.+.|++|+++|++.
T Consensus         2 ~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~   33 (453)
T PRK09496          2 KIIIVGAGQVGYTLAENLSGENNDVTVIDTDE   33 (453)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCcEEEEECCH
Confidence            69999999999999999999999999999854

>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]

Probab=92.71  E-value=0.15  Score=43.36  Aligned_cols=35  Identities=17%  Similarity=0.235  Sum_probs=32.0

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY   39 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~   39 (328)
                      .+|.+||-|..|...|.+|.++|++|+|+.++...
T Consensus         1 ~kIafIGLG~MG~pmA~~L~~aG~~v~v~~r~~~k   35 (286)
T COG2084           1 MKIAFIGLGIMGSPMAANLLKAGHEVTVYNRTPEK   35 (286)
T ss_pred             CeEEEEcCchhhHHHHHHHHHCCCEEEEEeCChhh
Confidence            36899999999999999999999999999998544

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=92.70  E-value=0.13  Score=51.69  Aligned_cols=34  Identities=21%  Similarity=0.108  Sum_probs=31.2

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~   38 (328)
                      -+|+|||||.+|+-||..+.+.|.+|+++.+++.
T Consensus       448 k~VvVIGGG~tA~D~A~ta~R~Ga~Vtlv~rr~~  481 (944)
T PRK12779        448 KEVFVIGGGNTAMDAARTAKRLGGNVTIVYRRTK  481 (944)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCEEEEEEecCc
Confidence            4799999999999999999999999999998753

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=92.65  E-value=0.16  Score=44.10  Aligned_cols=33  Identities=27%  Similarity=0.407  Sum_probs=29.6

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCC--eEEEeccCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGL--KVLHMDRND   37 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~--~V~vlE~~~   37 (328)
                      .+|+|||+|..|.+.|..|++.|.  +|++++++.
T Consensus         7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~   41 (307)
T PRK07502          7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSA   41 (307)
T ss_pred             cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCH
Confidence            579999999999999999999994  899998863

>PLN02695 GDP-D-mannose-3',5'-epimerase

Probab=92.64  E-value=0.17  Score=45.25  Aligned_cols=35  Identities=17%  Similarity=0.365  Sum_probs=31.8

Q ss_pred             CCcccEEEECC-ChhHHHHHHhhhhCCCeEEEeccC
Q 020312            2 DEEYDVIVLGT-GLKECILSGLLSVDGLKVLHMDRN   36 (328)
Q Consensus         2 ~~~~dvvIvG~-G~aGl~aA~~L~~~G~~V~vlE~~   36 (328)
                      .++++|+|.|| |..|...+.+|.++|++|+++.+.
T Consensus        19 ~~~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~   54 (370)
T PLN02695         19 SEKLRICITGAGGFIASHIARRLKAEGHYIIASDWK   54 (370)
T ss_pred             CCCCEEEEECCccHHHHHHHHHHHhCCCEEEEEEec
Confidence            34688999999 999999999999999999999874

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=92.64  E-value=0.18  Score=39.82  Aligned_cols=32  Identities=22%  Similarity=0.238  Sum_probs=28.7

Q ss_pred             cEEEECCChhHHHHHHhhhhCCC-eEEEeccCC
Q 020312            6 DVIVLGTGLKECILSGLLSVDGL-KVLHMDRND   37 (328)
Q Consensus         6 dvvIvG~G~aGl~aA~~L~~~G~-~V~vlE~~~   37 (328)
                      +|+|||+|..|..+|..|++.|. +++++|...
T Consensus         1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~   33 (174)
T cd01487           1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV   33 (174)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence            48999999999999999999997 599999843

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=92.62  E-value=0.17  Score=46.80  Aligned_cols=34  Identities=24%  Similarity=0.284  Sum_probs=31.0

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~   37 (328)
                      ..+|+|+|+|..|+.++..+...|.+|+++|.+.
T Consensus       164 ~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~  197 (511)
T TIGR00561       164 PAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRP  197 (511)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            4689999999999999999999999999998764

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=92.59  E-value=0.14  Score=46.35  Aligned_cols=30  Identities=20%  Similarity=0.170  Sum_probs=27.8

Q ss_pred             cEEEECCChhHHHHHHhhhhCCCeEEEeccC
Q 020312            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRN   36 (328)
Q Consensus         6 dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~   36 (328)
                      .|.|+|.|-+|+++|..|. +|.+|++.|..
T Consensus         2 ~v~v~G~G~sG~a~a~~L~-~G~~V~~~D~~   31 (401)
T PRK03815          2 KISLFGYGKTTKALAKFLK-KFGGVDIFDDK   31 (401)
T ss_pred             eEEEEeECHHHHHHHHHHh-CCCeEEEEcCC
Confidence            5899999999999999999 99999999954

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=92.57  E-value=0.18  Score=43.36  Aligned_cols=34  Identities=26%  Similarity=0.345  Sum_probs=31.0

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~   37 (328)
                      ...++|+|.|-.|..+|..|...|.+|++++++.
T Consensus       151 gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~  184 (287)
T TIGR02853       151 GSNVMVLGFGRTGMTIARTFSALGARVFVGARSS  184 (287)
T ss_pred             CCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            3579999999999999999999999999999854

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>PRK05442 malate dehydrogenase; Provisional

Probab=92.57  E-value=0.18  Score=44.13  Aligned_cols=37  Identities=16%  Similarity=0.117  Sum_probs=32.2

Q ss_pred             CCCcccEEEECC-ChhHHHHHHhhhhCCC-------eEEEeccCC
Q 020312            1 MDEEYDVIVLGT-GLKECILSGLLSVDGL-------KVLHMDRND   37 (328)
Q Consensus         1 ~~~~~dvvIvG~-G~aGl~aA~~L~~~G~-------~V~vlE~~~   37 (328)
                      |....+|+|||+ |..|.++|+.|...|.       ++.++|...
T Consensus         1 ~~~~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~   45 (326)
T PRK05442          1 MKAPVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPP   45 (326)
T ss_pred             CCCCcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCC
Confidence            677889999998 9999999999998773       799998743

>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=92.53  E-value=0.13  Score=47.49  Aligned_cols=32  Identities=28%  Similarity=0.318  Sum_probs=29.7

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRN   36 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~   36 (328)
                      .+|.|||.|.+|+++|..|.++|++|++.|..
T Consensus        10 ~~i~viG~G~~G~~~a~~l~~~G~~v~~~D~~   41 (460)
T PRK01390         10 KTVAVFGLGGSGLATARALVAGGAEVIAWDDN   41 (460)
T ss_pred             CEEEEEeecHhHHHHHHHHHHCCCEEEEECCC
Confidence            46899999999999999999999999999964

>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional

Probab=92.53  E-value=0.15  Score=44.15  Aligned_cols=32  Identities=19%  Similarity=0.259  Sum_probs=30.1

Q ss_pred             cEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (328)
Q Consensus         6 dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~   37 (328)
                      +|.|||.|.-|...|..|+++|++|++++++.
T Consensus         3 ~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~   34 (296)
T PRK15461          3 AIAFIGLGQMGSPMASNLLKQGHQLQVFDVNP   34 (296)
T ss_pred             eEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCH
Confidence            79999999999999999999999999999863

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=92.53  E-value=0.21  Score=40.52  Aligned_cols=33  Identities=18%  Similarity=0.324  Sum_probs=30.2

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCC-eEEEeccC
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGL-KVLHMDRN   36 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~-~V~vlE~~   36 (328)
                      +.+|+|||.|-.|..+|..|++.|. +++|+|..
T Consensus        21 ~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d   54 (202)
T TIGR02356        21 NSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD   54 (202)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence            5789999999999999999999995 89999974

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=92.50  E-value=0.12  Score=47.58  Aligned_cols=33  Identities=18%  Similarity=0.070  Sum_probs=30.8

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~   37 (328)
                      .+|+|||+|.+|+=.|.+|++.+.+|+++.+++
T Consensus       205 k~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~~  237 (461)
T PLN02172        205 EVVVVIGNFASGADISRDIAKVAKEVHIASRAS  237 (461)
T ss_pred             CEEEEECCCcCHHHHHHHHHHhCCeEEEEEeec
Confidence            579999999999999999999999999999865

>PRK06849 hypothetical protein; Provisional

Probab=92.50  E-value=0.19  Score=45.26  Aligned_cols=38  Identities=24%  Similarity=0.348  Sum_probs=34.2

Q ss_pred             CCCcccEEEECCCh-hHHHHHHhhhhCCCeEEEeccCCC
Q 020312            1 MDEEYDVIVLGTGL-KECILSGLLSVDGLKVLHMDRNDY   38 (328)
Q Consensus         1 ~~~~~dvvIvG~G~-aGl~aA~~L~~~G~~V~vlE~~~~   38 (328)
                      |..+..|+|+|++. .|+..|..|.++|++|++++....
T Consensus         1 ~~~~~~VLI~G~~~~~~l~iar~l~~~G~~Vi~~d~~~~   39 (389)
T PRK06849          1 MNTKKTVLITGARAPAALELARLFHNAGHTVILADSLKY   39 (389)
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCch
Confidence            66788999999998 599999999999999999998753

>TIGR00507 aroE shikimate 5-dehydrogenase

Probab=92.49  E-value=0.19  Score=42.84  Aligned_cols=33  Identities=18%  Similarity=0.236  Sum_probs=29.9

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEeccC
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRN   36 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~   36 (328)
                      ...++|+|+|-+|.++|..|++.|.+|+|+.++
T Consensus       117 ~k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~  149 (270)
T TIGR00507       117 NQRVLIIGAGGAARAVALPLLKADCNVIIANRT  149 (270)
T ss_pred             CCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            357899999999999999999999999999874

This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.

>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]

Probab=92.44  E-value=0.06  Score=47.74  Aligned_cols=33  Identities=21%  Similarity=0.324  Sum_probs=0.0

Q ss_pred             EEEECCChhHHHHHHhhh--------------hCCCeEEEeccCCCC
Q 020312            7 VIVLGTGLKECILSGLLS--------------VDGLKVLHMDRNDYY   39 (328)
Q Consensus         7 vvIvG~G~aGl~aA~~L~--------------~~G~~V~vlE~~~~~   39 (328)
                      ++|||||++|.-.|.+|+              +.-.+|+++|+.+.+
T Consensus       221 ~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~i  267 (491)
T KOG2495|consen  221 FVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADHI  267 (491)
T ss_pred             EEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchhH

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=92.40  E-value=0.21  Score=40.76  Aligned_cols=33  Identities=18%  Similarity=0.198  Sum_probs=29.9

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCC-eEEEeccC
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGL-KVLHMDRN   36 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~-~V~vlE~~   36 (328)
                      +..|+|||+|-.|..+|..|++.|. +++++|..
T Consensus        28 ~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D   61 (212)
T PRK08644         28 KAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD   61 (212)
T ss_pred             CCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            5689999999999999999999996 59999974

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=92.39  E-value=0.22  Score=37.77  Aligned_cols=32  Identities=22%  Similarity=0.307  Sum_probs=28.7

Q ss_pred             cEEEECCChhHHHHHHhhhhCCC-eEEEeccCC
Q 020312            6 DVIVLGTGLKECILSGLLSVDGL-KVLHMDRND   37 (328)
Q Consensus         6 dvvIvG~G~aGl~aA~~L~~~G~-~V~vlE~~~   37 (328)
                      +|+|||.|-.|..+|..|++.|. +++|++...
T Consensus         1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~   33 (143)
T cd01483           1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDT   33 (143)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCC
Confidence            48999999999999999999996 799998743

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>PRK11559 garR tartronate semialdehyde reductase; Provisional

Probab=92.39  E-value=0.19  Score=43.42  Aligned_cols=33  Identities=27%  Similarity=0.311  Sum_probs=30.3

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~   37 (328)
                      .+|.|||.|..|...|..|++.|++|++++++.
T Consensus         3 ~~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~   35 (296)
T PRK11559          3 MKVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNP   35 (296)
T ss_pred             ceEEEEccCHHHHHHHHHHHHCCCeEEEEcCCH
Confidence            379999999999999999999999999999864

>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating)

Probab=92.29  E-value=0.18  Score=43.65  Aligned_cols=32  Identities=16%  Similarity=0.247  Sum_probs=29.9

Q ss_pred             cEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (328)
Q Consensus         6 dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~   37 (328)
                      +|.|||.|..|...|..|+++|++|.+++++.
T Consensus         2 ~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~   33 (298)
T TIGR00872         2 QLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQ   33 (298)
T ss_pred             EEEEEcchHHHHHHHHHHHHCCCEEEEEECCH
Confidence            69999999999999999999999999998864

This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.

>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC

Probab=92.28  E-value=0.25  Score=41.39  Aligned_cols=35  Identities=20%  Similarity=0.227  Sum_probs=31.8

Q ss_pred             CcccEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (328)
Q Consensus         3 ~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~   37 (328)
                      +...++|+|+|..+...|..+...|++|+|+|-++
T Consensus        99 p~~~L~IfGaG~va~~la~la~~lGf~V~v~D~R~  133 (246)
T TIGR02964        99 PAPHVVLFGAGHVGRALVRALAPLPCRVTWVDSRE  133 (246)
T ss_pred             CCCEEEEECCcHHHHHHHHHHhcCCCEEEEEeCCc
Confidence            45789999999999999999999999999999654

Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.

>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases

Probab=92.27  E-value=0.2  Score=43.40  Aligned_cols=31  Identities=23%  Similarity=0.399  Sum_probs=28.0

Q ss_pred             cEEEECCChhHHHHHHhhhhCCC--eEEEeccC
Q 020312            6 DVIVLGTGLKECILSGLLSVDGL--KVLHMDRN   36 (328)
Q Consensus         6 dvvIvG~G~aGl~aA~~L~~~G~--~V~vlE~~   36 (328)
                      +|+|||+|..|.++|+.|...|.  ++.|+|.+
T Consensus         1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~   33 (307)
T cd05290           1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVN   33 (307)
T ss_pred             CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence            58999999999999999998884  79999975

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=92.18  E-value=0.23  Score=41.47  Aligned_cols=34  Identities=24%  Similarity=0.366  Sum_probs=30.2

Q ss_pred             cccEEEECCChhHHHHHHhhhhCC-CeEEEeccCC
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDG-LKVLHMDRND   37 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G-~~V~vlE~~~   37 (328)
                      ..+|+|||+|-.|..+|..|+..| -+++++|...
T Consensus        24 ~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~   58 (240)
T TIGR02355        24 ASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDT   58 (240)
T ss_pred             CCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCc
Confidence            478999999999999999999999 5788888743

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>TIGR00936 ahcY adenosylhomocysteinase

Probab=92.14  E-value=0.23  Score=44.61  Aligned_cols=34  Identities=18%  Similarity=0.099  Sum_probs=31.1

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~   37 (328)
                      ...|+|+|.|..|..+|..|+..|.+|+++|.++
T Consensus       195 Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp  228 (406)
T TIGR00936       195 GKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDP  228 (406)
T ss_pred             cCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCCh
Confidence            4579999999999999999999999999999765

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=92.11  E-value=0.27  Score=37.76  Aligned_cols=33  Identities=24%  Similarity=0.346  Sum_probs=29.4

Q ss_pred             cccEEEECCChhHHHHHHhhhhCC-CeEEEeccC
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDG-LKVLHMDRN   36 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G-~~V~vlE~~   36 (328)
                      ..+++|+|+|..|.+.|..|.+.| .+|++++++
T Consensus        19 ~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~   52 (155)
T cd01065          19 GKKVLILGAGGAARAVAYALAELGAAKIVIVNRT   52 (155)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCC
Confidence            467999999999999999999996 889999875

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>PRK08017 oxidoreductase; Provisional

Probab=92.01  E-value=0.24  Score=41.54  Aligned_cols=31  Identities=23%  Similarity=0.169  Sum_probs=28.4

Q ss_pred             cEEEECC-ChhHHHHHHhhhhCCCeEEEeccC
Q 020312            6 DVIVLGT-GLKECILSGLLSVDGLKVLHMDRN   36 (328)
Q Consensus         6 dvvIvG~-G~aGl~aA~~L~~~G~~V~vlE~~   36 (328)
                      .++|+|| |-.|...|.+|+++|.+|+++.++
T Consensus         4 ~vlVtGasg~IG~~la~~l~~~g~~v~~~~r~   35 (256)
T PRK08017          4 SVLITGCSSGIGLEAALELKRRGYRVLAACRK   35 (256)
T ss_pred             EEEEECCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence            5999998 999999999999999999998775

>PTZ00142 6-phosphogluconate dehydrogenase; Provisional

Probab=92.01  E-value=0.17  Score=46.58  Aligned_cols=33  Identities=18%  Similarity=0.221  Sum_probs=30.8

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~   37 (328)
                      .+|.|||.|..|...|..|+++|++|++++++.
T Consensus         2 ~~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~   34 (470)
T PTZ00142          2 SDIGLIGLAVMGQNLALNIASRGFKISVYNRTY   34 (470)
T ss_pred             CEEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            379999999999999999999999999999864

>PTZ00052 thioredoxin reductase; Provisional

Probab=91.95  E-value=0.7  Score=43.21  Aligned_cols=45  Identities=24%  Similarity=0.321  Sum_probs=38.6

Q ss_pred             CCCcccEEEECCChhHHHHHHhhhhCCCeEEEeccCC--------CCCCcccc
Q 020312            1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND--------YYGGESSS   45 (328)
Q Consensus         1 ~~~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~--------~~GG~~~s   45 (328)
                      |...|||+|||||.+|++||.+|+++|++|+|+|+..        .+||.|-.
T Consensus         2 ~~~~yDviVIG~GpaG~~AA~~aa~~G~~V~lie~~~~~~~~~~~~~GG~C~n   54 (499)
T PTZ00052          2 LTFMYDLVVIGGGSGGMAAAKEAAAHGKKVALFDYVKPSTQGTKWGLGGTCVN   54 (499)
T ss_pred             CccccCEEEECCCHHHHHHHHHHHhCCCeEEEEeccCCCCccccccccceecc
Confidence            4456999999999999999999999999999999731        48998633

>PRK12548 shikimate 5-dehydrogenase; Provisional

Probab=91.93  E-value=0.25  Score=42.51  Aligned_cols=33  Identities=21%  Similarity=0.333  Sum_probs=29.2

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCe-EEEeccCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLK-VLHMDRND   37 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~-V~vlE~~~   37 (328)
                      ..++|+|+|-+|.++|+.|++.|.+ |+|+.|+.
T Consensus       127 k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~  160 (289)
T PRK12548        127 KKLTVIGAGGAATAIQVQCALDGAKEITIFNIKD  160 (289)
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence            4689999999999999999999976 99998753

>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]

Probab=91.93  E-value=0.25  Score=42.12  Aligned_cols=36  Identities=28%  Similarity=0.298  Sum_probs=32.2

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCC
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY   39 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~   39 (328)
                      ...|+|||.|..|-+.|..|+++|+.|.++.++...
T Consensus         3 ~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~   38 (279)
T COG0287           3 SMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSA   38 (279)
T ss_pred             CcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcH
Confidence            468999999999999999999999999999886643

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=91.92  E-value=0.19  Score=48.67  Aligned_cols=34  Identities=21%  Similarity=0.123  Sum_probs=30.4

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCC-eEEEeccCCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGL-KVLHMDRNDY   38 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~-~V~vlE~~~~   38 (328)
                      -+|+|||||.+|+-+|..|.+.|. +|+|++++++
T Consensus       324 k~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~~  358 (652)
T PRK12814        324 KKVVVIGGGNTAIDAARTALRLGAESVTILYRRTR  358 (652)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCc
Confidence            579999999999999999999995 6999998764

>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+))

Probab=91.89  E-value=0.2  Score=44.08  Aligned_cols=32  Identities=16%  Similarity=0.175  Sum_probs=29.3

Q ss_pred             cEEEECCChhHHHHHHhhhhCC--------CeEEEeccCC
Q 020312            6 DVIVLGTGLKECILSGLLSVDG--------LKVLHMDRND   37 (328)
Q Consensus         6 dvvIvG~G~aGl~aA~~L~~~G--------~~V~vlE~~~   37 (328)
                      +|+|||+|.-|.+.|..|+++|        ++|+++.++.
T Consensus         1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~   40 (342)
T TIGR03376         1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEE   40 (342)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEecc
Confidence            5899999999999999999999        9999998743

Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.

>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=91.84  E-value=0.22  Score=43.16  Aligned_cols=32  Identities=25%  Similarity=0.293  Sum_probs=29.9

Q ss_pred             cEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (328)
Q Consensus         6 dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~   37 (328)
                      +|.|||.|..|...|..|.++|++|++++++.
T Consensus         2 ~Ig~IGlG~MG~~mA~~L~~~g~~v~v~dr~~   33 (301)
T PRK09599          2 QLGMIGLGRMGGNMARRLLRGGHEVVGYDRNP   33 (301)
T ss_pred             EEEEEcccHHHHHHHHHHHHCCCeEEEEECCH
Confidence            69999999999999999999999999998864

>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase

Probab=91.80  E-value=0.19  Score=45.97  Aligned_cols=33  Identities=21%  Similarity=0.339  Sum_probs=29.7

Q ss_pred             cEEEECCChhHHHHHHhhhhCCCeEEEeccCCC
Q 020312            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (328)
Q Consensus         6 dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~   38 (328)
                      +|.|||-|-+|+++|..|.++|++|++.|.+..
T Consensus         1 ~~~~iG~G~~G~a~a~~l~~~G~~V~~sD~~~~   33 (433)
T TIGR01087         1 KILILGLGKTGRAVARFLHKKGAEVTVTDLKPN   33 (433)
T ss_pred             CEEEEEeCHhHHHHHHHHHHCCCEEEEEeCCCC
Confidence            478999999999999999999999999997543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	328
1gnd_A	447	Guanine Nucleotide Dissociation Inhibitor, Alpha-Is		1e-109
1lv0_A	449	Crystal Structure Of The Rab Effector Guanine Nucle		1e-109
1d5t_A	433	Guanine Nucleotide Dissociation Inhibitor, Alpha-Is		1e-109
3cph_G	451	Crystal Structure Of Sec4 In Complex With Rab-Gdi L		3e-92
1ukv_G	453	Structure Of Rabgdp-Dissociation Inhibitor In Compl		3e-92
3p1w_A	475	Crystal Structure Of Rab Gdi From Plasmodium Falcip		5e-83
1ltx_R	650	Structure Of Rab Escort Protein-1 In Complex With R		1e-24
1vg0_A	650	The Crystal Structures Of The Rep-1 Protein In Comp		2e-24

>pdb|1GND|A Chain A, Guanine Nucleotide Dissociation Inhibitor, Alpha-Isoform Length = 447

Iteration: 1
 Score =  391 bits (1004), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 187/293 (63%), Positives = 240/293 (81%), Gaps = 3/293 (1%)
Query: 1   MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLN-LIQLWKRFRGNE 59
           MDEEYDVIVLGTGL ECILSG++SV+G KVLHMDRN YYGGESSS+  L +L+KRF+  E
Sbjct: 1   MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLE 60
Query: 60  QPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVP 119
            PP  +G  RD+NVD+IPKF++ANG LV++L++T+VT+YL FK V+GSFVY  GK++KVP
Sbjct: 61  GPPETMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVP 120
Query: 120 ATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDN 179
           +T+ EAL S LMG+FEKRR RKF ++V ++DENDPKT EG+D    + R++  K+ L  +
Sbjct: 121 STETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQNTSMRDVYRKFDLGQD 180
Query: 180 TIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFA 239
            IDF GHALAL+R D YL++P L+T+ R+KLY+ES+AR+ G SPY+YPLYGLGELPQ FA
Sbjct: 181 VIDFTGHALALYRTDDYLDQPCLETINRIKLYSESLARY-GKSPYLYPLYGLGELPQGFA 239
Query: 240 RLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKV 292
           RLSA+YGGTYMLNKP   +   E GKVVGV SEGE A+CK+++CDPSY+P++V
Sbjct: 240 RLSAIYGGTYMLNKPVDDIIM-ENGKVVGVKSEGEVARCKQLICDPSYVPDRV 291

>pdb|1LV0|A Chain A, Crystal Structure Of The Rab Effector Guanine Nucleotide Dissociation Inhibitor (Gdi) In Complex With A Geranylgeranyl (Gg) Peptide Length = 449

Iteration: 1
 Score =  391 bits (1004), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 187/293 (63%), Positives = 240/293 (81%), Gaps = 3/293 (1%)
Query: 1   MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLN-LIQLWKRFRGNE 59
           MDEEYDVIVLGTGL ECILSG++SV+G KVLHMDRN YYGGESSS+  L +L+KRF+  E
Sbjct: 3   MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLE 62
Query: 60  QPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVP 119
            PP  +G  RD+NVD+IPKF++ANG LV++L++T+VT+YL FK V+GSFVY  GK++KVP
Sbjct: 63  GPPETMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVP 122
Query: 120 ATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDN 179
           +T+ EAL S LMG+FEKRR RKF ++V ++DENDPKT EG+D    + R++  K+ L  +
Sbjct: 123 STETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQNTSMRDVYRKFDLGQD 182
Query: 180 TIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFA 239
            IDF GHALAL+R D YL++P L+T+ R+KLY+ES+AR+ G SPY+YPLYGLGELPQ FA
Sbjct: 183 VIDFTGHALALYRTDDYLDQPCLETINRIKLYSESLARY-GKSPYLYPLYGLGELPQGFA 241
Query: 240 RLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKV 292
           RLSA+YGGTYMLNKP   +   E GKVVGV SEGE A+CK+++CDPSY+P++V
Sbjct: 242 RLSAIYGGTYMLNKPVDDIIM-ENGKVVGVKSEGEVARCKQLICDPSYVPDRV 293

>pdb|1D5T|A Chain A, Guanine Nucleotide Dissociation Inhibitor, Alpha-Isoform Length = 433

Iteration: 1
 Score =  390 bits (1002), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 187/293 (63%), Positives = 240/293 (81%), Gaps = 3/293 (1%)
Query: 1   MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLN-LIQLWKRFRGNE 59
           MDEEYDVIVLGTGL ECILSG++SV+G KVLHMDRN YYGGESSS+  L +L+KRF+  E
Sbjct: 3   MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLE 62
Query: 60  QPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVP 119
            PP  +G  RD+NVD+IPKF++ANG LV++L++T+VT+YL FK V+GSFVY  GK++KVP
Sbjct: 63  GPPETMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVP 122
Query: 120 ATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDN 179
           +T+ EAL S LMG+FEKRR RKF ++V ++DENDPKT EG+D    + R++  K+ L  +
Sbjct: 123 STETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQNTSMRDVYRKFDLGQD 182
Query: 180 TIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFA 239
            IDF GHALAL+R D YL++P L+T+ R+KLY+ES+AR+ G SPY+YPLYGLGELPQ FA
Sbjct: 183 VIDFTGHALALYRTDDYLDQPCLETINRIKLYSESLARY-GKSPYLYPLYGLGELPQGFA 241
Query: 240 RLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKV 292
           RLSA+YGGTYMLNKP   +   E GKVVGV SEGE A+CK+++CDPSY+P++V
Sbjct: 242 RLSAIYGGTYMLNKPVDDIIM-ENGKVVGVKSEGEVARCKQLICDPSYVPDRV 293

>pdb|3CPH|G Chain G, Crystal Structure Of Sec4 In Complex With Rab-Gdi Length = 451

Iteration: 1
 Score =  335 bits (858), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 161/296 (54%), Positives = 224/296 (75%), Gaps = 6/296 (2%)
Query: 1   MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGN-- 58
           +D +YDVIVLGTG+ ECILSGLLSVDG KVLH+D+ D+YGGE++S+ L QL+++F+ N  
Sbjct: 6   IDTDYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGGEAASVTLSQLYEKFKQNPI 65
Query: 59  --EQPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVH 116
             E+  +  G  RD+NVD+IPKF++ANG L  +LIHTDVT+Y+ FK V GS+V+ +GK++
Sbjct: 66  SKEERESKFGKDRDWNVDLIPKFLMANGELTNILIHTDVTRYVDFKQVSGSYVFKQGKIY 125
Query: 117 KVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGL 176
           KVPA ++EA+ SPLMGIFEKRR +KF  ++  Y E+D  TH+G+DL + T  E+  K+GL
Sbjct: 126 KVPANEIEAISSPLMGIFEKRRMKKFLEWISSYKEDDLSTHQGLDLDKNTMDEVYYKFGL 185
Query: 177 DDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQ 236
            ++T +FIGHA+AL  +D YL +PA  + +R+ LY +S+AR+ G SPY+YP+YGLGELPQ
Sbjct: 186 GNSTKEFIGHAMALWTNDDYLQQPARPSFERILLYCQSVARY-GKSPYLYPMYGLGELPQ 244
Query: 237 AFARLSAVYGGTYMLNKPECKVEFDEE-GKVVGVTSEGETAKCKKVVCDPSYLPNK 291
            FARLSA+YGGTYML+ P  +V + ++ GK  GV ++  T K   V+ DP+Y P K
Sbjct: 245 GFARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGVKTKLGTFKAPLVIADPTYFPEK 300

>pdb|1UKV|G Chain G, Structure Of Rabgdp-Dissociation Inhibitor In Complex With Prenylated Ypt1 Gtpase Length = 453

Iteration: 1
 Score =  334 bits (857), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 161/296 (54%), Positives = 224/296 (75%), Gaps = 6/296 (2%)
Query: 1   MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGN-- 58
           +D +YDVIVLGTG+ ECILSGLLSVDG KVLH+D+ D+YGGE++S+ L QL+++F+ N  
Sbjct: 8   IDTDYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGGEAASVTLSQLYEKFKQNPI 67
Query: 59  --EQPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVH 116
             E+  +  G  RD+NVD+IPKF++ANG L  +LIHTDVT+Y+ FK V GS+V+ +GK++
Sbjct: 68  SKEERESKFGKDRDWNVDLIPKFLMANGELTNILIHTDVTRYVDFKQVSGSYVFKQGKIY 127
Query: 117 KVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGL 176
           KVPA ++EA+ SPLMGIFEKRR +KF  ++  Y E+D  TH+G+DL + T  E+  K+GL
Sbjct: 128 KVPANEIEAISSPLMGIFEKRRMKKFLEWISSYKEDDLSTHQGLDLDKNTMDEVYYKFGL 187
Query: 177 DDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQ 236
            ++T +FIGHA+AL  +D YL +PA  + +R+ LY +S+AR+ G SPY+YP+YGLGELPQ
Sbjct: 188 GNSTKEFIGHAMALWTNDDYLQQPARPSFERILLYCQSVARY-GKSPYLYPMYGLGELPQ 246
Query: 237 AFARLSAVYGGTYMLNKPECKVEFDEE-GKVVGVTSEGETAKCKKVVCDPSYLPNK 291
            FARLSA+YGGTYML+ P  +V + ++ GK  GV ++  T K   V+ DP+Y P K
Sbjct: 247 GFARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGVKTKLGTFKAPLVIADPTYFPEK 302

>pdb|3P1W|A Chain A, Crystal Structure Of Rab Gdi From Plasmodium Falciparum, Pfl2060c Length = 475

Iteration: 1
 Score =  304 bits (778), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 155/303 (51%), Positives = 209/303 (68%), Gaps = 14/303 (4%)
Query: 3   EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPP 62
           E YDVI+LGTGLKECILSGLLS  G K+L +DRN YYGGE++SLNL  L+  F+  E  P
Sbjct: 19  EHYDVIILGTGLKECILSGLLSHYGKKILVLDRNPYYGGETASLNLTNLYNTFKPKENIP 78
Query: 63  AHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGK-------- 114
           +  G +R +NVD+IPKFI+  G LV++L  T VT YL +  V+GS+VY   K        
Sbjct: 79  SKYGENRHWNVDLIPKFILVGGNLVKILKKTRVTNYLEWLVVEGSYVYQHQKKGFLTSEK 138
Query: 115 -VHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAK 173
            +HKVPATDMEAL SPL+ + EK R + F+ YV ++D N   T + +D  ++T  E+   
Sbjct: 139 FIHKVPATDMEALVSPLLSLMEKNRCKNFYQYVSEWDANKRNTWDNLDPYKLTMLEIYKH 198
Query: 174 YGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGE 233
           + L   TIDF+GHA+AL+ +D YL +PA  T++R+KLY +SI+ F G SP+IYPLYGLG 
Sbjct: 199 FNLCQLTIDFLGHAVALYLNDDYLKQPAYLTLERIKLYMQSISAF-GKSPFIYPLYGLGG 257
Query: 234 LPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGV-TSEGETAKCKKVVCDPSY---LP 289
           +P+ F+R+ A+ GGT+MLNK      FD++ KV G+ +S+GE A C KV+CDPSY   L 
Sbjct: 258 IPEGFSRMCAINGGTFMLNKNVVDFVFDDDNKVCGIKSSDGEIAYCDKVICDPSYVMHLK 317
Query: 290 NKV 292
           NK+
Sbjct: 318 NKI 320

>pdb|1LTX|R Chain R, Structure Of Rab Escort Protein-1 In Complex With Rab Geranylgeranyl Transferase And Isoprenoid Length = 650

Iteration: 1
 Score =  110 bits (274), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 62/216 (28%), Positives = 111/216 (51%), Gaps = 22/216 (10%)
Query: 69  RDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKS 128
           R +N+D++ K + + G L+ +LI ++V++Y  FK +     + +G V +VP +  +   S
Sbjct: 222 RRFNIDLVSKLLYSRGLLIDLLIKSNVSRYAEFKNITRILAFREGTVEQVPCSRADVFNS 281
Query: 129 PLMGIFEKRRARKFFIYVQDYDE--NDPKTHEGMDLTRVTTRELIAKYGLDDNTIDFIGH 186
             + + EKR   KF  +  +Y+E  ++ + +EG      T  E +    L  N   F+ H
Sbjct: 282 KQLTMVEKRMLMKFLTFCVEYEEHPDEYRAYEG-----TTFSEYLKTQKLTPNLQYFVLH 336
Query: 187 ALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFARLSAVYG 246
           ++A+  +        +D +K  K + + + R+ G +P+++PLYG GELPQ F R+ AV+G
Sbjct: 337 SIAMTSETTSC---TVDGLKATKKFLQCLGRY-GNTPFLFPLYGQGELPQCFCRMCAVFG 392
Query: 247 GTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVV 282
           G Y L              V  +  + E+ KCK V+
Sbjct: 393 GIYCLRH-----------SVQCLVVDKESRKCKAVI 417

>pdb|1VG0|A Chain A, The Crystal Structures Of The Rep-1 Protein In Complex With Monoprenylated Rab7 Protein Length = 650

Iteration: 1
 Score =  109 bits (273), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 62/216 (28%), Positives = 111/216 (51%), Gaps = 22/216 (10%)
Query: 69  RDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKS 128
           R +N+D++ K + + G L+ +LI ++V++Y  FK +     + +G V +VP +  +   S
Sbjct: 222 RRFNIDLVSKLLYSRGLLIDLLIKSNVSRYAEFKNITRILAFREGTVEQVPCSRADVFNS 281
Query: 129 PLMGIFEKRRARKFFIYVQDYDE--NDPKTHEGMDLTRVTTRELIAKYGLDDNTIDFIGH 186
             + + EKR   KF  +  +Y+E  ++ + +EG      T  E +    L  N   F+ H
Sbjct: 282 KQLTMVEKRMLMKFLTFCVEYEEHPDEYRAYEG-----TTFSEYLKTQKLTPNLQYFVLH 336
Query: 187 ALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFARLSAVYG 246
           ++A+  +        +D +K  K + + + R+ G +P+++PLYG GELPQ F R+ AV+G
Sbjct: 337 SIAMTSETTSC---TVDGLKATKKFLQCLGRY-GNTPFLFPLYGQGELPQCFCRMCAVFG 392
Query: 247 GTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVV 282
           G Y L              V  +  + E+ KCK V+
Sbjct: 393 GIYCLRH-----------SVQCLVVDKESRKCKAVI 417

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	328
2bcg_G	453	Secretory pathway GDP dissociation inhibitor; RABG	1e-120
1d5t_A	433	Guanine nucleotide dissociation inhibitor; ultra-h	1e-111
3p1w_A	475	Rabgdi protein; GDI RAB, malaria, structural genom	1e-107
1vg0_A	650	RAB proteins geranylgeranyltransferase component A	2e-87
1vg0_A	650	RAB proteins geranylgeranyltransferase component A	9e-29
1s3e_A	520	Amine oxidase [flavin-containing] B; human monoami	2e-09
3k7m_X	431	6-hydroxy-L-nicotine oxidase; enantiomeric substra	6e-07
3ka7_A	425	Oxidoreductase; structural genomics, PSI-2, protei	2e-06
2yg5_A	453	Putrescine oxidase; oxidoreductase, flavin; HET: F	6e-06
2ivd_A	478	PPO, PPOX, protoporphyrinogen oxidase; porphyrin b	1e-05
3nrn_A	421	Uncharacterized protein PF1083; alpha-beta protein	4e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04
3i6d_A	470	Protoporphyrinogen oxidase; protein-inhibitor comp	5e-04

>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G* Length = 453

 Score =  353 bits (906), Expect = e-120
 Identities = 160/297 (53%), Positives = 223/297 (75%), Gaps = 6/297 (2%)

Query: 1   MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFR---- 56
           +D +YDVIVLGTG+ ECILSGLLSVDG KVLH+D+ D+YGGE++S+ L QL+++F+    
Sbjct: 8   IDTDYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGGEAASVTLSQLYEKFKQNPI 67

Query: 57  GNEQPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVH 116
             E+  +  G  RD+NVD+IPKF++ANG L  +LIHTDVT+Y+ FK V GS+V+ +GK++
Sbjct: 68  SKEERESKFGKDRDWNVDLIPKFLMANGELTNILIHTDVTRYVDFKQVSGSYVFKQGKIY 127

Query: 117 KVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGL 176
           KVPA ++EA+ SPLMGIFEKRR +KF  ++  Y E+D  TH+G+DL + T  E+  K+GL
Sbjct: 128 KVPANEIEAISSPLMGIFEKRRMKKFLEWISSYKEDDLSTHQGLDLDKNTMDEVYYKFGL 187

Query: 177 DDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQ 236
            ++T +FIGHA+AL  +D YL +PA  + +R+ LY +S+AR+ G SPY+YP+YGLGELPQ
Sbjct: 188 GNSTKEFIGHAMALWTNDDYLQQPARPSFERILLYCQSVARY-GKSPYLYPMYGLGELPQ 246

Query: 237 AFARLSAVYGGTYMLNKPECKVEFDEE-GKVVGVTSEGETAKCKKVVCDPSYLPNKV 292
            FARLSA+YGGTYML+ P  +V + ++ GK  GV ++  T K   V+ DP+Y P K 
Sbjct: 247 GFARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGVKTKLGTFKAPLVIADPTYFPEKC 303

>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A Length = 433

 Score =  328 bits (841), Expect = e-111
 Identities = 187/294 (63%), Positives = 240/294 (81%), Gaps = 3/294 (1%)

Query: 1   MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLN-LIQLWKRFRGNE 59
           MDEEYDVIVLGTGL ECILSG++SV+G KVLHMDRN YYGGESSS+  L +L+KRF+  E
Sbjct: 3   MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLE 62

Query: 60  QPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVP 119
            PP  +G  RD+NVD+IPKF++ANG LV++L++T+VT+YL FK V+GSFVY  GK++KVP
Sbjct: 63  GPPETMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVP 122

Query: 120 ATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDN 179
           +T+ EAL S LMG+FEKRR RKF ++V ++DENDPKT EG+D    + R++  K+ L  +
Sbjct: 123 STETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQNTSMRDVYRKFDLGQD 182

Query: 180 TIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFA 239
            IDF GHALAL+R D YL++P L+T+ R+KLY+ES+AR+ G SPY+YPLYGLGELPQ FA
Sbjct: 183 VIDFTGHALALYRTDDYLDQPCLETINRIKLYSESLARY-GKSPYLYPLYGLGELPQGFA 241

Query: 240 RLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKVI 293
           RLSA+YGGTYMLNKP   +   E GKVVGV SEGE A+CK+++CDPSY+P++V 
Sbjct: 242 RLSAIYGGTYMLNKPVDDIIM-ENGKVVGVKSEGEVARCKQLICDPSYVPDRVR 294

>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7} Length = 475

 Score =  321 bits (824), Expect = e-107
 Identities = 152/300 (50%), Positives = 205/300 (68%), Gaps = 11/300 (3%)

Query: 1   MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQ 60
             E YDVI+LGTGLKECILSGLLS  G K+L +DRN YYGGE++SLNL  L+  F+  E 
Sbjct: 17  QGEHYDVIILGTGLKECILSGLLSHYGKKILVLDRNPYYGGETASLNLTNLYNTFKPKEN 76

Query: 61  PPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGK------ 114
            P+  G +R +NVD+IPKFI+  G LV++L  T VT YL +  V+GS+VY   K      
Sbjct: 77  IPSKYGENRHWNVDLIPKFILVGGNLVKILKKTRVTNYLEWLVVEGSYVYQHQKKGFLTS 136

Query: 115 ---VHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELI 171
              +HKVPATDMEAL SPL+ + EK R + F+ YV ++D N   T + +D  ++T  E+ 
Sbjct: 137 EKFIHKVPATDMEALVSPLLSLMEKNRCKNFYQYVSEWDANKRNTWDNLDPYKLTMLEIY 196

Query: 172 AKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGL 231
             + L   TIDF+GHA+AL+ +D YL +PA  T++R+KLY +SI+ F G SP+IYPLYGL
Sbjct: 197 KHFNLCQLTIDFLGHAVALYLNDDYLKQPAYLTLERIKLYMQSISAF-GKSPFIYPLYGL 255

Query: 232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSE-GETAKCKKVVCDPSYLPN 290
           G +P+ F+R+ A+ GGT+MLNK      FD++ KV G+ S  GE A C KV+CDPSY+ +
Sbjct: 256 GGIPEGFSRMCAINGGTFMLNKNVVDFVFDDDNKVCGIKSSDGEIAYCDKVICDPSYVMH 315

>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R* Length = 650

 Score =  274 bits (701), Expect = 2e-87
 Identities = 63/297 (21%), Positives = 123/297 (41%), Gaps = 22/297 (7%)

Query: 27  GLKVLHMDRNDYYGGESSSLNLIQL--W---------KRFRGNEQPPAHLGSSRDYNVDM 75
             +V   +         +  +  +                +        +   R +N+D+
Sbjct: 169 SPEVNDAEATGKKENSDAKSSTEEPSENVPKVQDNTETPKKNRITYSQIIKEGRRFNIDL 228

Query: 76  IPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFE 135
           + K + + G L+ +LI ++V++Y  FK +     + +G V +VP +  +   S  + + E
Sbjct: 229 VSKLLYSRGLLIDLLIKSNVSRYAEFKNITRILAFREGTVEQVPCSRADVFNSKQLTMVE 288

Query: 136 KRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDR 195
           KR   KF  +  +Y+   P  +   +    T  E +    L  N   F+ H++A+  +  
Sbjct: 289 KRMLMKFLTFCVEYE-EHPDEYRAYE--GTTFSEYLKTQKLTPNLQYFVLHSIAMTSETT 345

Query: 196 YLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPE 255
                 +D +K  K + + + R+ G +P+++PLYG GELPQ F R+ AV+GG Y L    
Sbjct: 346 S---CTVDGLKATKKFLQCLGRY-GNTPFLFPLYGQGELPQCFCRMCAVFGGIYCLRHSV 401

Query: 256 CKVEFDEEGKVVG--VTSEGETAKCKKVVCDPSYLPNKVIIIMLIGFI--LIFLVRR 308
             +  D+E +     +   G+    K  + + SYL       +    I   + +   
Sbjct: 402 QCLVVDKESRKCKAVIDQFGQRIISKHFIIEDSYLSENTCSRVQYRQISRAVLITDG 458

>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R* Length = 650

 Score =  115 bits (288), Expect = 9e-29
 Identities = 31/164 (18%), Positives = 58/164 (35%), Gaps = 9/164 (5%)

Query: 1   MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQ 60
           +  ++DVIV+GTGL E I++   S  G +VLH+D   YYGG  +S +   L    +  ++
Sbjct: 5   LPSDFDVIVIGTGLPESIIAAACSRSGQRVLHVDSRSYYGGNWASFSFSGLLSWLKEYQE 64

Query: 61  PPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYL----YFKAVDGSFVYNKGKVH 116
               +  +  +   ++      N   + +       +++    Y        V   G + 
Sbjct: 65  NNDVVTENSMWQEQILE-----NEEAIPLSSKDKTIQHVEVFCYASQDLHKDVEEAGALQ 119

Query: 117 KVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGM 160
           K  A+   A  +      E          +       P      
Sbjct: 120 KNHASVTSAQSAEAAEAAETSCLPTAVEPLSMGSCEIPAEQSQC 163

>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ... Length = 520

 Score = 57.5 bits (139), Expect = 2e-09
 Identities = 47/291 (16%), Positives = 92/291 (31%), Gaps = 37/291 (12%)

Query: 1   MDEEYDVIVLGTGLKECILSGL-----LSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRF 55
           M  + DV+V+G G+     SG+     L   GL V+ ++  D  GG            R 
Sbjct: 1   MSNKCDVVVVGGGI-----SGMAAAKLLHDSGLNVVVLEARDRVGG------------RT 43

Query: 56  RGNEQPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKV 115
                      + +   VD+   ++      +  L      +      V+    + KGK 
Sbjct: 44  YTLR-------NQKVKYVDLGGSYVGPTQNRILRLAKELGLETYKVNEVERLIHHVKGKS 96

Query: 116 HKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTH-EGMDLTRVTTRELIAKY 174
           +         + +P+  +      R      ++   + P       +   +T +EL+ K 
Sbjct: 97  YPFRG-PFPPVWNPITYLDHNNFWRTMDDMGREIPSDAPWKAPLAEEWDNMTMKELLDKL 155

Query: 175 GLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYA--ESIARFQGGSPYIYPLYGLG 232
              ++        + L          AL  +  +K       I     G      + G G
Sbjct: 156 CWTESAKQLATLFVNLCVTAETHEVSALWFLWYVKQCGGTTRIISTTNGGQERKFVGGSG 215

Query: 233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVC 283
           ++ +       + G    L +P   ++   E  +V  T   E  + K V+ 
Sbjct: 216 QVSERIM---DLLGDRVKLERPVIYIDQTRENVLV-ETLNHEMYEAKYVIS 262

>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A* Length = 431

 Score = 49.4 bits (118), Expect = 6e-07
 Identities = 38/284 (13%), Positives = 78/284 (27%), Gaps = 37/284 (13%)

Query: 5   YDVIVLGTGLKECILSGL-----LSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNE 59
           YD IV+G G      SGL     L+  G KVL ++  +  GG + S          R   
Sbjct: 2   YDAIVVGGG-----FSGLKAARDLTNAGKKVLLLEGGERLGGRAYSR-------ESRNVP 49

Query: 60  QPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVP 119
                +G +  +             A +            +             +   +P
Sbjct: 50  GLRVEIGGAYLHRKHHPR-----LAAELDRYGIPTAAASEFTSFRHRLGPTAVDQAFPIP 104

Query: 120 ATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDN 179
            ++  A+         +             D      ++ ++   +   E + K  L   
Sbjct: 105 GSEAVAV---------EAATYTLLRDAHRIDLEKGLENQDLEDLDIPLNEYVDKLDLPPV 155

Query: 180 TIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFA 239
           +  F+                AL  ++ +  +  SI         ++   G  +L  A +
Sbjct: 156 SRQFLLAWAWNMLGQPADQASALWMLQLVAAHHYSILGVVLSLDEVFS-NGSADLVDAMS 214

Query: 240 RLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVC 283
           +          L      ++   +  V     +G   +   V+ 
Sbjct: 215 QE----IPEIRLQTVVTGIDQSGDV-VNVTVKDGHAFQAHSVIV 253

>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei} Length = 425

 Score = 48.1 bits (115), Expect = 2e-06
 Identities = 44/294 (14%), Positives = 84/294 (28%), Gaps = 57/294 (19%)

Query: 6   DVIVLGTGLKECILSGL-----LSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQ 60
             +V+G GL      GL     LS  G +V   +R    GG  ++               
Sbjct: 2   KTVVIGAGL-----GGLLSAARLSKAGHEVEVFERLPITGGRFTN------LSY------ 44

Query: 61  PPAHLGSSRDYNVDMIPKFI---IANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHK 117
                   + + +      +      G L   L   +         V       +  + K
Sbjct: 45  --------KGFQLSSGAFHMLPNGPGGPLACFLKEVEA----SVNIVRSEMTTVRVPLKK 92

Query: 118 VPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLD 177
                ++  K      F    + K  + +     +  K          + +  I     D
Sbjct: 93  GNPDYVKGFKDISFNDFPSLLSYKDRMKIALLIVSTRKNRPSGS----SLQAWIKSQVSD 148

Query: 178 DNTIDFI----GHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGE 233
           +  I F     G AL+L  D+     P  +      ++      ++ G     P  G   
Sbjct: 149 EWLIKFADSFCGWALSLKSDEV----PVEE------VFEIIENMYRFGGTG-IPEGGCKG 197

Query: 234 LPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSY 287
           +  A   + +  GG     +   K+   E GK  G+ ++        V+ +  +
Sbjct: 198 IIDALETVISANGGKIHTGQEVSKILI-ENGKAAGIIADDRIHDADLVISNLGH 250

>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A* Length = 453

 Score = 46.7 bits (111), Expect = 6e-06
 Identities = 42/290 (14%), Positives = 93/290 (32%), Gaps = 40/290 (13%)

Query: 3   EEYDVIVLGTGLKECILSGL-----LSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRG 57
            + DV ++G G      SGL     L   GL V  ++  D  GG              R 
Sbjct: 4   LQRDVAIVGAGP-----SGLAAATALRKAGLSVAVIEARDRVGG--------------R- 43

Query: 58  NEQPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHT-DVTKYLYFKAVDGSFVYNKGKVH 116
                    +     +++  +++  +   +  L+    +  +  ++  +  ++ + G+  
Sbjct: 44  -----TWTDTIDGAVLEIGGQWVSPDQTALISLLDELGLKTFERYREGESVYISSAGERT 98

Query: 117 KVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGM-DLTRVTTRELIAKYG 175
           +         ++    +   R   +           +P  H    DL  V+ ++ +    
Sbjct: 99  RYTGDSFPTNETTKKEMD--RLIDEMDDLAAQIGAEEPWAHPLARDLDTVSFKQWLINQS 156

Query: 176 LDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARF--QGGSPYIYPLYGLGE 233
            D    D IG  +A     +  +  +      M   A S +    +        + G+ +
Sbjct: 157 DDAEARDNIGLFIAGGMLTKPAHSFSALQAVLMAASAGSFSHLVDEDFILDKRVIGGMQQ 216

Query: 234 LPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVC 283
           +    A      G    LN P   V+++E G  V +       +  +V+ 
Sbjct: 217 VSIRMA---EALGDDVFLNAPVRTVKWNESGATV-LADGDIRVEASRVIL 262

>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A* Length = 478

 Score = 45.7 bits (108), Expect = 1e-05
 Identities = 43/314 (13%), Positives = 84/314 (26%), Gaps = 73/314 (23%)

Query: 3   EEYDVIVLGTGLKECILSGL-----LSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRG 57
              +V V+G G+     SGL     L   G   + ++ +   GG   +  L         
Sbjct: 15  TGMNVAVVGGGI-----SGLAVAHHLRSRGTDAVLLESSARLGGAVGTHAL--------- 60

Query: 58  NEQPPAHLGSSRDYNVDMIPKFIIANGALVRVLIH----TDVTKYLYFKAVDGSFVYNKG 113
                        Y V+  P   +      R L          +     A    +VY +G
Sbjct: 61  -----------AGYLVEQGPNSFLDREPATRALAAALNLEGRIRAAD-PAAKRRYVYTRG 108

Query: 114 KVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAK 173
           ++  VPA+    L S ++ +  + R                +  EG+D    +      +
Sbjct: 109 RLRSVPASPPAFLASDILPLGARLRVAGELF--------SRRAPEGVD---ESLAAFGRR 157

Query: 174 -YG--LDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIAR------------- 217
             G       +D +   +     ++         + +M+    S+               
Sbjct: 158 HLGHRATQVLLDAVQTGIYAGDVEQLSVAATFPMLVKMEREHRSLILGAIRAQKAQRQAA 217

Query: 218 ------FQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS 271
                  +          GL  L  A A      G    +      +  ++ G  + +  
Sbjct: 218 LPAGTAPKLSGALSTFDGGLQVLIDALAASL---GDAAHVGARVEGLAREDGGWRLIIEE 274

Query: 272 --EGETAKCKKVVC 283
                     +VV 
Sbjct: 275 HGRRAELSVAQVVL 288

>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus} Length = 421

 Score = 43.9 bits (104), Expect = 4e-05
 Identities = 45/303 (14%), Positives = 94/303 (31%), Gaps = 76/303 (25%)

Query: 6   DVIVLGTGLKECILSGL-----LSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFR---- 56
             +V+G GL      GL     L+ +G +++ ++++   GG  ++L      K F+    
Sbjct: 2   RAVVVGAGL-----GGLLAGAFLARNGHEIIVLEKSAMIGGRFTNLPY----KGFQLSTG 52

Query: 57  -------GNEQPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFV 109
                  G + P AHL       V+++                    K          + 
Sbjct: 53  ALHMIPHGEDGPLAHLLRILGAKVEIVNSN----------------PKGKIL------W- 89

Query: 110 YNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRE 169
             +GK+     +         + + EK +A K    ++            +    +   E
Sbjct: 90  --EGKIFHYRESW------KFLSVKEKAKALKLLAEIRMNK---------LPKEEIPADE 132

Query: 170 LIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLY 229
            I +   ++  +  +  + A      + +  +L  +  ++L  E  A  + G P      
Sbjct: 133 WIKEKIGENEFLLSVLESFA-----GWADSVSLSDLTALELAKEIRAALRWGGPG-LIRG 186

Query: 230 GLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVC--DPSY 287
           G   +     R+     G  +  K   ++   EE KV   T + E       +       
Sbjct: 187 GCKAVIDELERIIMENKGKILTRKEVVEINI-EEKKV--YTRDNEEYSFDVAISNVGVRE 243

Query: 288 LPN 290
              
Sbjct: 244 TVK 246

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.4 bits (96), Expect = 3e-04
 Identities = 31/286 (10%), Positives = 70/286 (24%), Gaps = 121/286 (42%)

Query: 24  SVDGLKVLHMDRNDYYGG--ESSSLNLIQLWKRFRGNEQPP-AHLGSSRDYNVDMIPKFI 80
            +      H+  + +          +L+  +   R  + P      + R   + +I    
Sbjct: 280 FLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPR--RLSII---- 333

Query: 81  IANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLM-------GI 133
                 +R  + T    +  +K        N  K+  +  + +  L+            +
Sbjct: 334 ---AESIRDGLAT----WDNWKH------VNCDKLTTIIESSLNVLEPAEYRKMFDRLSV 380

Query: 134 FEK-----------------------------------RRARKFFIYVQDYD-------E 151
           F                                     ++ ++  I +           E
Sbjct: 381 FPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLE 440

Query: 152 NDPKTHEGMDLTRVTTRELIAKY---------GLDDNTID-----FIG-HALALHRDDR- 195
           N+   H          R ++  Y          L    +D      IG H   +   +R 
Sbjct: 441 NEYALH----------RSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERM 490

Query: 196 ------YLN------------------EPALDTVKRMKLYAESIAR 217
                 +L+                     L+T++++K Y   I  
Sbjct: 491 TLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICD 536

>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis} Length = 470

 Score = 40.7 bits (95), Expect = 5e-04
 Identities = 40/312 (12%), Positives = 84/312 (26%), Gaps = 61/312 (19%)

Query: 2   DEEYDVIVLGTGLKECILSGL-----------LSVDGLKVLHMDRNDYYGGESSSLNLIQ 50
           D +  V+++G G+     +GL                L++  ++ +   GG         
Sbjct: 3   DGKKHVVIIGGGI-----TGLAAAFYMEKEIKEKNLPLELTLVEASPRVGG--------- 48

Query: 51  LWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHT-DVTKYLYFKAVDGSFV 109
              + +  ++          Y ++  P   +        L+    +   L   A   S+V
Sbjct: 49  ---KIQTVKKD--------GYIIERGPDSFLERKKSAPQLVKDLGLEHLLVNNATGQSYV 97

Query: 110 YNKGKVHKVPA-------TDMEAL-KSPLMGIFEKRRARKFFIYVQDYDENDPKTHE--- 158
                +H +P        T +     + L  +  K RA   FI      ++D    E   
Sbjct: 98  LVNRTLHPMPKGAVMGIPTKIAPFVSTGLFSLSGKARAAMDFILPASKTKDDQSLGEFFR 157

Query: 159 ---GMDLTRVTTRELIAKYGLDDNTIDFIGHAL----ALHRDDRYLNEPALDTVKRMKLY 211
              G ++       L++     D     +           +  R L      T  +    
Sbjct: 158 RRVGDEVVENLIEPLLSGIYAGDIDKLSLMSTFPQFYQTEQKHRSLILGMKKTRPQGSGQ 217

Query: 212 AESIARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS 271
             +  +      +     GL  L +   +   +            K+        +    
Sbjct: 218 QLTAKK---QGQFQTLSTGLQTLVEEIEK--QLKLTKVYKGTKVTKLSHSGSCYSL-ELD 271

Query: 272 EGETAKCKKVVC 283
            G T     V+ 
Sbjct: 272 NGVTLDADSVIV 283

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	328
3p1w_A	475	Rabgdi protein; GDI RAB, malaria, structural genom	100.0
2bcg_G	453	Secretory pathway GDP dissociation inhibitor; RABG	100.0
1d5t_A	433	Guanine nucleotide dissociation inhibitor; ultra-h	100.0
1vg0_A	650	RAB proteins geranylgeranyltransferase component A	100.0
4dgk_A	501	Phytoene dehydrogenase; the FAD/NAD(P)-binding ros	99.97
3ka7_A	425	Oxidoreductase; structural genomics, PSI-2, protei	99.93
3nrn_A	421	Uncharacterized protein PF1083; alpha-beta protein	99.93
4gde_A	513	UDP-galactopyranose mutase; flavin adenine dinucle	99.93
1s3e_A	520	Amine oxidase [flavin-containing] B; human monoami	99.93
3nks_A	477	Protoporphyrinogen oxidase; FAD containing protein	99.92
2vvm_A	495	Monoamine oxidase N; FAD, peroxisome, flavoprotein	99.92
2ivd_A	478	PPO, PPOX, protoporphyrinogen oxidase; porphyrin b	99.92
3i6d_A	470	Protoporphyrinogen oxidase; protein-inhibitor comp	99.89
3lov_A	475	Protoporphyrinogen oxidase; structural genomics, J	99.89
2yg5_A	453	Putrescine oxidase; oxidoreductase, flavin; HET: F	99.89
1sez_A	504	Protoporphyrinogen oxidase, mitochondrial; FAD-bin	99.88
2b9w_A	424	Putative aminooxidase; isomerase, conjugated linol	99.86
3k7m_X	431	6-hydroxy-L-nicotine oxidase; enantiomeric substra	99.85
4dsg_A	484	UDP-galactopyranose mutase; rossmann fold, flavin	99.84
1rsg_A	516	FMS1 protein; FAD binding motif, oxidoreductase; H	99.83
2jae_A	489	L-amino acid oxidase; oxidoreductase, dimerisation	99.83
2iid_A	498	L-amino-acid oxidase; flavoenzyme, FAD binding dom	99.82
3hdq_A	397	UDP-galactopyranose mutase; substrate and inhibito	99.8
2e1m_A	376	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	99.79
1v0j_A	399	UDP-galactopyranose mutase; flavoprotein, isomeras	99.78
1i8t_A	367	UDP-galactopyranose mutase; rossman fold, FAD, con	99.77
2bi7_A	384	UDP-galactopyranose mutase; FAD, flavoprotein, iso	99.76
1b37_A	472	Protein (polyamine oxidase); flavin-dependent amin	99.75
4gut_A	776	Lysine-specific histone demethylase 1B; histone de	99.62
3dje_A	438	Fructosyl amine: oxygen oxidoreductase; fructosyl-	99.61
3qj4_A	342	Renalase; FAD/NAD(P)-binding rossmann fold superfa	99.6
3dme_A	369	Conserved exported protein; structural genomics, P	99.59
3nyc_A	381	D-arginine dehydrogenase; FAD, imino-arginine, oxi	99.58
3ayj_A	721	Pro-enzyme of L-phenylalanine oxidase; amino acid	99.56
2xag_A	852	Lysine-specific histone demethylase 1; amine oxida	99.55
2z3y_A	662	Lysine-specific histone demethylase 1; chromatin,	99.54
1y56_B	382	Sarcosine oxidase; dehydrogenase, protein-protein	99.54
3v76_A	417	Flavoprotein; structural genomics, PSI-biology, NE	99.52
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	99.51
2oln_A	397	NIKD protein; flavoprotein, rossmann fold, oxidore	99.5
4at0_A	510	3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore	99.49
1pj5_A	830	N,N-dimethylglycine oxidase; channelling, FAD bind	99.48
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	99.47
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	99.46
2gag_B	405	Heterotetrameric sarcosine oxidase beta-subunit; f	99.45
2i0z_A	447	NAD(FAD)-utilizing dehydrogenases; structural geno	99.44
3da1_A	561	Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9	99.43
2gqf_A	401	Hypothetical protein HI0933; structural genomics,	99.42
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	99.41
2uzz_A	372	N-methyl-L-tryptophan oxidase; N-methyltryptophan	99.41
2gf3_A	389	MSOX, monomeric sarcosine oxidase; flavoprotein ox	99.39
3axb_A	448	Putative oxidoreductase; dinucleotide-binding fold	99.37
2rgh_A	571	Alpha-glycerophosphate oxidase; flavoprotein oxida	99.36
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	99.36
1qo8_A	566	Flavocytochrome C3 fumarate reductase; oxidoreduct	99.34
1y0p_A	571	Fumarate reductase flavoprotein subunit; flavocyto	99.34
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	99.32
3nlc_A	549	Uncharacterized protein VP0956; FAD-binding protei	99.31
2wdq_A	588	Succinate dehydrogenase flavoprotein subunit; succ	99.27
2qcu_A	501	Aerobic glycerol-3-phosphate dehydrogenase; glycer	99.26
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	99.25
2h88_A	621	Succinate dehydrogenase flavoprotein subunit; comp	99.23
1d4d_A	572	Flavocytochrome C fumarate reductase; oxidoreducta	99.22
1rp0_A	284	ARA6, thiazole biosynthetic enzyme; protein ligand	99.21
3i3l_A	591	Alkylhalidase CMLS; flavin-dependent halogenase, c	99.19
2bs2_A	660	Quinol-fumarate reductase flavoprotein subunit A;	99.17
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	99.13
2qa1_A	500	PGAE, polyketide oxygenase PGAE; FAD, angucycline,	99.13
2x3n_A	399	Probable FAD-dependent monooxygenase; oxidoreducta	99.12
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	99.12
3ihg_A	535	RDME; flavoenzyme, anthracycline, polyketide biosy	99.11
1chu_A	540	Protein (L-aspartate oxidase); flavoenzyme, NAD bi	99.1
3e1t_A	512	Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro	99.1
3atr_A	453	Conserved archaeal protein; saturating double bond	99.09
2aqj_A	538	Tryptophan halogenase, pRNA; flavin-dependent halo	99.09
1kf6_A	602	Fumarate reductase flavoprotein; respiration, fuma	99.08
3oz2_A	397	Digeranylgeranylglycerophospholipid reductase; str	99.07
2gmh_A	584	Electron transfer flavoprotein-ubiquinone oxidored	99.07
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	99.06
2qa2_A	499	CABE, polyketide oxygenase CABE; FAD, angucycline,	99.05
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	99.05
3fmw_A	570	Oxygenase; mithramycin, baeyer-villiger, flavin bi	99.03
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	99.03
3qvp_A	583	Glucose oxidase; oxidoreductase; HET: NAG BMA MAN	99.01
1jnr_A	643	Adenylylsulfate reductase; oxidoreductase; HET: FA	99.0
2e5v_A	472	L-aspartate oxidase; archaea, oxidoreductase; HET:	99.0
3t37_A	526	Probable dehydrogenase; BET alpha beta fold, ADP b	99.0
2e4g_A	550	Tryptophan halogenase; flavin-binding, rebeccamyci	98.99
3fpz_A	326	Thiazole biosynthetic enzyme; FAD, mitochondrion,	98.98
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	98.97
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	98.96
2zxi_A	637	TRNA uridine 5-carboxymethylaminomethyl modificat	98.94
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	98.93
3ces_A	651	MNMG, tRNA uridine 5-carboxymethylaminomethyl modi	98.92
4fk1_A	304	Putative thioredoxin reductase; structural genomic	98.92
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	98.92
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	98.89
1ju2_A	536	HydroxynitrIle lyase; flavin, GMC oxidoreductase,	98.89
1n4w_A	504	CHOD, cholesterol oxidase; flavoenzyme, steroid me	98.88
1coy_A	507	Cholesterol oxidase; oxidoreductase(oxygen recepto	98.88
1c0p_A	363	D-amino acid oxidase; alpha-beta-alpha motif, flav	98.87
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	98.86
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	98.84
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	98.81
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	98.78
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	98.78
2jbv_A	546	Choline oxidase; alcohol oxidation, flavoenyzme ox	98.78
3c96_A	410	Flavin-containing monooxygenase; FAD, oxidoreducta	98.78
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	98.77
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	98.73
4dna_A	463	Probable glutathione reductase; structural genomic	98.72
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	98.72
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	98.72
3jsk_A	344	Cypbp37 protein; octameric thiazole synthase, bios	98.72
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	98.72
1gpe_A	587	Protein (glucose oxidase); oxidoreductase(flavopro	98.72
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	98.71
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	98.7
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	98.69
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	98.69
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	98.68
2gjc_A	326	Thiazole biosynthetic enzyme, mitochondrial; gluta	98.67
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	98.67
3c4n_A	405	Uncharacterized protein DR_0571; alpha-beta protei	98.67
1ojt_A	482	Surface protein; redox-active center, glycolysis,	98.66
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	98.66
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	98.65
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	98.65
3g3e_A	351	D-amino-acid oxidase; FAD, flavoprotein, oxidoredu	98.65
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	98.65
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	98.64
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	98.64
3pl8_A	623	Pyranose 2-oxidase; substrate complex, H167A mutan	98.63
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	98.62
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	98.62
2cul_A	232	Glucose-inhibited division protein A-related PROT	98.61
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	98.6
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	98.6
4hb9_A	412	Similarities with probable monooxygenase; flavin,	98.59
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	98.59
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	98.59
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	98.59
2vou_A	397	2,6-dihydroxypyridine hydroxylase; oxidoreductase,	98.59
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	98.58
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	98.58
3r9u_A	315	Thioredoxin reductase; structural genomics, center	98.58
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	98.58
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	98.56
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	98.55
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	98.55
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	98.55
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	98.54
2bry_A	497	NEDD9 interacting protein with calponin homology a	98.54
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	98.53
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	98.53
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	98.53
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	98.53
2r0c_A	549	REBC; flavin adenine dinucleotide, monooxygenase,	98.52
1fec_A	490	Trypanothione reductase; redox-active center, oxid	98.51
1k0i_A	394	P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h	98.51
2dkh_A	639	3-hydroxybenzoate hydroxylase; flavoprotein, monoo	98.5
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	98.5
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	98.48
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	98.48
3c4a_A	381	Probable tryptophan hydroxylase VIOD; alpha-beta p	98.47
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	98.47
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	98.46
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	98.45
3ihm_A	430	Styrene monooxygenase A; rossman fold, anti-parall	98.43
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	98.43
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	98.43
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	98.43
3cp8_A	641	TRNA uridine 5-carboxymethylaminomethyl modificati	98.41
3gyx_A	662	Adenylylsulfate reductase; oxidoreductase; HET: FA	98.41
2pyx_A	526	Tryptophan halogenase; structural genomics, JOI fo	98.39
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	98.39
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	98.38
1y56_A	493	Hypothetical protein PH1363; dehydrogenase, protei	98.38
2ywl_A	180	Thioredoxin reductase related protein; uncharacter	98.36
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	98.36
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	98.34
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	98.34
3g5s_A	443	Methylenetetrahydrofolate--tRNA-(uracil-5-)- methy	98.33
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	98.33
3q9t_A	577	Choline dehydrogenase and related flavoproteins; g	98.31
2weu_A	511	Tryptophan 5-halogenase; regioselectivity, antifun	98.31
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	98.31
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	98.29
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	98.28
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	98.27
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	98.26
1kdg_A	546	CDH, cellobiose dehydrogenase; GMC oxidoreductase,	98.24
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	98.22
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	98.21
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	98.21
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	98.21
1pn0_A	665	Phenol 2-monooxygenase; two dimers, TLS refinement	98.2
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	98.16
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	98.15
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	98.15
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	98.15
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	98.11
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	98.08
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	98.06
3fim_B	566	ARYL-alcohol oxidase; AAO, lignin degradation, oxi	98.06
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	98.05
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	98.05
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	98.02
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	97.94
3hyw_A	430	Sulfide-quinone reductase; monotopic membrane prot	97.84
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	97.83
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	97.83
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	97.77
3vrd_B	401	FCCB subunit, flavocytochrome C flavin subunit; su	97.76
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	97.75
4b63_A	501	L-ornithine N5 monooxygenase; oxidoreductase, side	97.35
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	97.04
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	96.97
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	96.95
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	96.94
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	96.82
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	96.79
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	96.76
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	96.72
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	96.71
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	96.69
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	96.69
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	96.68
1id1_A	153	Putative potassium channel protein; RCK domain, E.	96.66
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	96.64
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	96.64
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	96.64
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	96.61
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	96.6
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	96.5
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	96.45
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	96.43
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	96.4
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	96.34
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	96.31
2x5o_A	439	UDP-N-acetylmuramoylalanine--D-glutamate ligase; A	96.3
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	96.3
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	96.29
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	96.27
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	96.26
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	96.25
1ojt_A	482	Surface protein; redox-active center, glycolysis,	96.25
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	96.23
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	96.22
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	96.21
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	96.19
3qha_A	296	Putative oxidoreductase; seattle structural genomi	96.18
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	96.18
3c85_A	183	Putative glutathione-regulated potassium-efflux S	96.16
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	96.15
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	96.12
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	96.11
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	96.11
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	96.09
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	96.07
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	96.03
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	96.02
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	96.02
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	96.02
2cul_A	232	Glucose-inhibited division protein A-related PROT	96.0
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	96.0
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	95.98
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	95.97
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	95.97
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	95.94
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	95.94
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	95.93
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	95.92
4g65_A	461	TRK system potassium uptake protein TRKA; structur	95.91
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	95.91
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	95.9
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	95.88
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	95.88
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	95.86
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	95.85
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	95.82
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	95.81
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	95.8
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	95.77
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	95.75
3c4n_A	405	Uncharacterized protein DR_0571; alpha-beta protei	95.74
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	95.72
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	95.71
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	95.71
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	95.71
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	95.68
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	95.68
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	95.68
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	95.68
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	95.67
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	95.66
3tl2_A	315	Malate dehydrogenase; center for structural genomi	95.66
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	95.65
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	95.64
1fec_A	490	Trypanothione reductase; redox-active center, oxid	95.64
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	95.63
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	95.61
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	95.6
3g17_A	294	Similar to 2-dehydropantoate 2-reductase; structur	95.58
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	95.56
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	95.56
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	95.54
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	95.51
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	95.51
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	95.5
2weu_A	511	Tryptophan 5-halogenase; regioselectivity, antifun	95.45
4dna_A	463	Probable glutathione reductase; structural genomic	95.45
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	95.45
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	95.44
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	95.43
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	95.43
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	95.43
3ego_A	307	Probable 2-dehydropantoate 2-reductase; structural	95.42
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	95.41
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	95.41
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	95.41
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	95.4
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	95.4
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	95.38
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	95.36
1z82_A	335	Glycerol-3-phosphate dehydrogenase; TM0378, struct	95.34
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	95.33
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	95.33
2ywl_A	180	Thioredoxin reductase related protein; uncharacter	95.3
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	95.3
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	95.28
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	95.28
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	95.26
1evy_A	366	Glycerol-3-phosphate dehydrogenase; rossmann fold,	95.24
2izz_A	322	Pyrroline-5-carboxylate reductase 1; amino-acid bi	95.24
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	95.21
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	95.18
2qyt_A	317	2-dehydropantoate 2-reductase; APC81190, porphyrom	95.16
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	95.11
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	95.11
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	95.06
1txg_A	335	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid	95.06
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	95.05
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	95.05
1dlj_A	402	UDP-glucose dehydrogenase; rossmann fold, ternary	95.04
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	95.01
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	95.01
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	95.0
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	95.0
2a9f_A	398	Putative malic enzyme ((S)-malate:NAD+ oxidoreduct	95.0
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	95.0
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	94.98
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	94.97
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	94.96
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	94.96
3r9u_A	315	Thioredoxin reductase; structural genomics, center	94.96
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	94.96
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	94.92
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	94.91
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	94.89
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	94.87
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	94.86
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	94.81
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	94.77
3dfu_A	232	Uncharacterized protein from 6-phosphogluconate de	94.77
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	94.75
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	94.74
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	94.74
1ez4_A	318	Lactate dehydrogenase; rossmann fold, oxidoreducta	94.73
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	94.72
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	94.71
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	94.71
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	94.63
3c7a_A	404	Octopine dehydrogenase; L) stereospecific opine de	94.59
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	94.54
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	94.47
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	94.44
1x0v_A	354	GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase	94.42
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	94.38
2pyx_A	526	Tryptophan halogenase; structural genomics, JOI fo	94.38
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	94.36
2rcy_A	262	Pyrroline carboxylate reductase; malaria, structur	94.33
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	94.32
2zyd_A	480	6-phosphogluconate dehydrogenase, decarboxylating;	94.29
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	94.27
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	94.27
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	94.26
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	94.25
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	94.25
1yqg_A	263	Pyrroline-5-carboxylate reductase; structural geno	94.16
4gwg_A	484	6-phosphogluconate dehydrogenase, decarboxylating;	94.11
3ojo_A	431	CAP5O; rossmann fold, complex with cofactor NAD an	94.11
4ezb_A	317	Uncharacterized conserved protein; structural geno	94.1
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	94.1
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	94.08
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	94.01
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	94.0
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	94.0
3nep_X	314	Malate dehydrogenase; halophIle, molecular adpatat	93.97
2gf2_A	296	Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct	93.96
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	93.95
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	93.94
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	93.93
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	93.89
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	93.83
2iz1_A	474	6-phosphogluconate dehydrogenase, decarboxylating;	93.83
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	93.81
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	93.79
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	93.76
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	93.73
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	93.7
1pjq_A	457	CYSG, siroheme synthase; rossman fold, nucleotide	93.69
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	93.68
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	93.68
1y7t_A	327	Malate dehydrogenase; NAD-dependent-MDH-NADPH comp	93.68
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	93.66
1yj8_A	375	Glycerol-3-phosphate dehydrogenase; SGPP, structur	93.66
2pgd_A	482	6-phosphogluconate dehydrogenase; oxidoreductase (	93.65
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	93.63
4gbj_A	297	6-phosphogluconate dehydrogenase NAD-binding; stru	93.61
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	93.59
1pgj_A	478	6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o	93.54
2i6t_A	303	Ubiquitin-conjugating enzyme E2-like isoform A; L-	93.53
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	93.51
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	93.51
3ktd_A	341	Prephenate dehydrogenase; structural genomics, joi	93.5
4ffl_A	363	PYLC; amino acid, biosynthesis of pyrrolysine, iso	93.46
3gt0_A	247	Pyrroline-5-carboxylate reductase; structural geno	93.42
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	93.42
4b4o_A	298	Epimerase family protein SDR39U1; isomerase; HET:	93.4
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	93.4
2cvz_A	289	Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase;	93.38
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	93.38
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	93.37
4hv4_A	494	UDP-N-acetylmuramate--L-alanine ligase; MURC, yers	93.36
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	93.32
2ahr_A	259	Putative pyrroline carboxylate reductase; pyrrolin	93.31
1edz_A	320	5,10-methylenetetrahydrofolate dehydrogenase; nucl	93.31
3fi9_A	343	Malate dehydrogenase; structural genomics, oxidore	93.26
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	93.25
1k0i_A	394	P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h	93.25
2p4q_A	497	6-phosphogluconate dehydrogenase, decarboxylating;	93.24
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	93.23
3vku_A	326	L-LDH, L-lactate dehydrogenase; rossmann fold, NAD	93.23
2qrj_A	394	Saccharopine dehydrogenase, NAD+, L-lysine- formin	93.19
1i36_A	264	Conserved hypothetical protein MTH1747; NADP bindi	93.14
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	93.13
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	93.09
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	93.05
1mld_A	314	Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D	93.01
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	92.99
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	92.97
3enk_A	341	UDP-glucose 4-epimerase; seattle structural genomi	92.9
1yb4_A	295	Tartronic semialdehyde reductase; structural genom	92.86
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	92.86
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	92.84
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	92.83
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	92.66
1nvt_A	287	Shikimate 5'-dehydrogenase; structural genomics, P	92.6
1b8p_A	329	Protein (malate dehydrogenase); oxidoreductase; 1.	92.57
1qyd_A	313	Pinoresinol-lariciresinol reductase; NADPH-depende	92.55
1qyc_A	308	Phenylcoumaran benzylic ether reductase PT1; NADPH	92.52
3vps_A	321	TUNA, NAD-dependent epimerase/dehydratase; tunicam	92.44
2zqz_A	326	L-LDH, L-lactate dehydrogenase; oxidoreductase, ro	92.39
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	92.38
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	92.35
1np3_A	338	Ketol-acid reductoisomerase; A DEEP figure-OF-eigh	92.34
3u62_A	253	Shikimate dehydrogenase; shikimate pathway, oxidor	92.34
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	92.32
2x0j_A	294	Malate dehydrogenase; oxidoreductase, hyperthermop	92.2
1y56_A	493	Hypothetical protein PH1363; dehydrogenase, protei	92.18
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	92.17
3k5i_A	403	Phosphoribosyl-aminoimidazole carboxylase; purine	92.15
2f00_A	491	UDP-N-acetylmuramate--L-alanine ligase; amide bond	92.11
2d4a_B	308	Malate dehydrogenase; archaea, hyperthermophIle, o	92.09
3cp8_A	641	TRNA uridine 5-carboxymethylaminomethyl modificati	92.08
3b1f_A	290	Putative prephenate dehydrogenase; enzyme, 4-hydro	92.02
1lnq_A	336	MTHK channels, potassium channel related protein;	91.98
1smk_A	326	Malate dehydrogenase, glyoxysomal; tricarboxylic c	91.98
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	91.9
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	91.84
4gx0_A	565	TRKA domain protein; membrane protein, ION channel	91.84
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	91.84
3fbt_A	282	Chorismate mutase and shikimate 5-dehydrogenase fu	91.71
2d5c_A	263	AROE, shikimate 5-dehydrogenase; substrate, dimer,	91.67
2yjz_A	201	Metalloreductase steap4; oxidoreductase, metabolic	90.93
3dqp_A	219	Oxidoreductase YLBE; alpha-beta protein., structur	91.62
3pwz_A	272	Shikimate dehydrogenase 3; alpha-beta, oxidoreduct	91.59
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	91.56
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	91.54
3o8q_A	281	Shikimate 5-dehydrogenase I alpha; structural geno	91.53
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	91.47
1p3d_A	475	UDP-N-acetylmuramate--alanine ligase; alpha/beta p	91.47
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	91.34
4a26_A	300	Putative C-1-tetrahydrofolate synthase, cytoplasm;	91.33
3oz2_A	397	Digeranylgeranylglycerophospholipid reductase; str	91.26
1a4i_A	301	Methylenetetrahydrofolate dehydrogenase / methenyl	91.24
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	91.15
2wm3_A	299	NMRA-like family domain containing protein 1; unkn	91.0
3obb_A	300	Probable 3-hydroxyisobutyrate dehydrogenase; struc	90.97

>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7}

Probab=100.00  E-value=2.2e-41  Score=304.65  Aligned_cols=291  Identities=53%  Similarity=0.946  Sum_probs=254.1

Q ss_pred             CCCcccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCcccccchHHHHhhhcCCCCCCCccCCCCCeEEecCcceE
Q 020312            1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFI   80 (328)
Q Consensus         1 ~~~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~   80 (328)
                      |++++||+|||+|++|+++|+.|+++|++|+|+|+++++||++++.+.++++.+|..+..+|..+|..++|.+|++|+++
T Consensus        17 ~~~~~dv~iiG~G~~g~~~a~~l~~~g~~v~~~e~~~~~Gg~~~s~~~~~l~~~~~~g~~~~~~~g~~R~y~iDL~P~~l   96 (475)
T 3p1w_A           17 QGEHYDVIILGTGLKECILSGLLSHYGKKILVLDRNPYYGGETASLNLTNLYNTFKPKENIPSKYGENRHWNVDLIPKFI   96 (475)
T ss_dssp             CCCEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCEECHHHHHHHHCTTSCCCGGGCCGGGCCEESSCCBE
T ss_pred             ccccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeccCCCCCCccccchhhhhhhcccCCCcccccccccceEEeecCeEe
Confidence            66789999999999999999999999999999999999999999999988888898776677889999999999999999


Q ss_pred             ecCchHHHHHHhcCCCCeeEEEeeCceeEee---------CCeEEEcCCCchhhhcCCCCChhhHHHHHHHHHHHhhccc
Q 020312           81 IANGALVRVLIHTDVTKYLYFKAVDGSFVYN---------KGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDE  151 (328)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (328)
                      +..++++..+.+.++.++++|+..++.|.+.         +|+.+++|.+..+.+.+.++++.+|..+.+|+.++.++..
T Consensus        97 ~~~g~L~~lL~~~gv~~ylef~~~~~~y~~~~~~~~~~~~~g~~~~VPss~~e~~~~~lLs~~eK~~l~kFL~~l~~~~~  176 (475)
T 3p1w_A           97 LVGGNLVKILKKTRVTNYLEWLVVEGSYVYQHQKKGFLTSEKFIHKVPATDMEALVSPLLSLMEKNRCKNFYQYVSEWDA  176 (475)
T ss_dssp             ETTSHHHHHHHHTTCGGGSCEEECSEEEEEEEECCCSSSCCEEEEECCCSHHHHHTCTTSCHHHHHHHHHHHHHHHHCCT
T ss_pred             ecCcHHHHHHHHCCchheeEEEecCcceEEecCccccccCCCceEeCCCCHHHHhhccCCCHHHHHHHHHHHHHHHhhhh
Confidence            9999999999999999999999999988875         5678999988888899999999999999999999888754


Q ss_pred             CCCcccccccCCCCCHHHHHHhcCCChhHHHHHhhhhhcccCCCCCCCchHHHHHHHHHHHHhhhcccCCCeEEeecCCc
Q 020312          152 NDPKTHEGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGL  231 (328)
Q Consensus       152 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~gG~  231 (328)
                      ..+..+..++....++.+|++++++++.+++++..++++...+++...+....+.++..+..++.++ |.+++.+|+||+
T Consensus       177 ~~~~~~~~~~l~~~s~~e~l~~~gls~~l~~fl~~alaL~~~~~~~~~~a~~~l~ri~~y~~Sl~~y-g~s~~~yp~gG~  255 (475)
T 3p1w_A          177 NKRNTWDNLDPYKLTMLEIYKHFNLCQLTIDFLGHAVALYLNDDYLKQPAYLTLERIKLYMQSISAF-GKSPFIYPLYGL  255 (475)
T ss_dssp             TCGGGSTTCCTTTSBHHHHHHHTTCCHHHHHHHHHHTSCCSSSGGGGSBHHHHHHHHHHHHHHHHHH-SSCSEEEETTCT
T ss_pred             ccchhhhcccccCCCHHHHHHHcCCCHHHHHHHHHHHHhhcCCCcccCCHHHHHHHHHHHHHHHhhc-CCCceEEECCCH
Confidence            4444444455678899999999999999988887777766655555557777888888888888888 778999999999


Q ss_pred             CcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe-cCceEEcCEEEECCCCC---cchh
Q 020312          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYL---PNKV  292 (328)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~-~g~~~~ad~vV~~~~~~---~~~~  292 (328)
                      +.++++|++.+++.|++|+++++|++|..++++++++|++ +|++++||+||+++++.   |.++
T Consensus       256 ~~L~~aL~r~~~~~Gg~i~l~t~V~~I~~d~~g~v~gV~~~~G~~i~Ad~VI~a~~~~~~~p~~~  320 (475)
T 3p1w_A          256 GGIPEGFSRMCAINGGTFMLNKNVVDFVFDDDNKVCGIKSSDGEIAYCDKVICDPSYVMHLKNKI  320 (475)
T ss_dssp             THHHHHHHHHHHHC--CEESSCCEEEEEECTTSCEEEEEETTSCEEEEEEEEECGGGCTTSTTSE
T ss_pred             HHHHHHHHHHHHHcCCEEEeCCeEEEEEEecCCeEEEEEECCCcEEECCEEEECCCccccCcccc
Confidence            9999999999999999999999999999933788999998 67789999999999988   7644

>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*

Probab=100.00  E-value=2.4e-35  Score=268.21  Aligned_cols=301  Identities=53%  Similarity=0.968  Sum_probs=231.2

Q ss_pred             CCCcccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCcccccchHHHHhhhcCCC----CCCCccCCCCCeEEecC
Q 020312            1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNE----QPPAHLGSSRDYNVDMI   76 (328)
Q Consensus         1 ~~~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~g   76 (328)
                      |+.++||||||||++||+||++|+++|++|+|||+++++||+++|.+.++.+..|....    ..+.+++....|..+++
T Consensus         8 ~~~~~dvvVIGaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~g~~~~~d~~~~~~~~~~~~~~~g~~~~~~l~   87 (453)
T 2bcg_G            8 IDTDYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGGEAASVTLSQLYEKFKQNPISKEERESKFGKDRDWNVDLI   87 (453)
T ss_dssp             CCCBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCEECHHHHHHHHCSSCCCHHHHHHHHCCGGGCCEESS
T ss_pred             ccccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCccccceeccchhceeccCCccccCcchhcccccceeeccc
Confidence            45679999999999999999999999999999999999999999988765222221000    00011234456889999


Q ss_pred             cceEecCchHHHHHHhcCCCCeeEEEeeCceeEeeCCeEEEcCCCchhhhcCCCCChhhHHHHHHHHHHHhhcccCCCcc
Q 020312           77 PKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKT  156 (328)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (328)
                      |+++...+.+.+.+.+.++.+++++...+..+.+.+|+.+.+|.+..+.+.+.+.+++++..+.+|+..+.++....+..
T Consensus        88 P~~l~~~~~l~~ll~~lg~~~~l~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~  167 (453)
T 2bcg_G           88 PKFLMANGELTNILIHTDVTRYVDFKQVSGSYVFKQGKIYKVPANEIEAISSPLMGIFEKRRMKKFLEWISSYKEDDLST  167 (453)
T ss_dssp             CCBEETTSHHHHHHHHHTGGGTCCEEECCCEEEEETTEEEECCSSHHHHHHCTTSCHHHHHHHHHHHHHHHHCBTTBGGG
T ss_pred             cceeecCcHHHHHHHhcCCccceEEEEccceeEEeCCeEEECCCChHHHHhhhccchhhHHHHHHHHHHHHHhccCCchh
Confidence            99999988888888888888888888888888888999999996657888888888888778888888877654322222


Q ss_pred             cccccCCCCCHHHHHHhcCCChhHHHHHhhhhhcccCCCCCCCchHHHHHHHHHHHHhhhcccCCCeEEeecCCcCcHHH
Q 020312          157 HEGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQ  236 (328)
Q Consensus       157 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~gG~~~l~~  236 (328)
                      +..++....|+.+++++++.++.+++++...+.+...+.+...|....+.++..+..++..+ +..+|.+|+||++.+++
T Consensus       168 ~~~~~~~~~s~~~~l~~~~~~~~l~~~l~~~~~l~~~~~~~~~p~~~~~~~~~~~~~s~~~~-~~~~~~~p~gG~~~l~~  246 (453)
T 2bcg_G          168 HQGLDLDKNTMDEVYYKFGLGNSTKEFIGHAMALWTNDDYLQQPARPSFERILLYCQSVARY-GKSPYLYPMYGLGELPQ  246 (453)
T ss_dssp             STTCCTTTSBHHHHHHHTTCCHHHHHHHHHHTSCCSSSGGGGSBHHHHHHHHHHHHHHHHHH-SSCSEEEETTCTTHHHH
T ss_pred             hhccccccCCHHHHHHHhCCCHHHHHHHHHHHHhccCccccCCchHHHHHHHHHHHHHHHhh-cCCceEeeCCCHHHHHH
Confidence            22223467899999999999999888776555444333444445555555555565555555 45678899999999999


Q ss_pred             HHHHHHHHcCcEEEcCcceeEEEecC-CCcEEEEEecCceEEcCEEEECCCCCcchhhh---hccceeEE
Q 020312          237 AFARLSAVYGGTYMLNKPECKVEFDE-EGKVVGVTSEGETAKCKKVVCDPSYLPNKVII---IMLIGFIL  302 (328)
Q Consensus       237 ~l~~~~~~~G~~i~~~~~V~~I~~~~-~~~v~~v~~~g~~~~ad~vV~~~~~~~~~~~~---~~~~~~~~  302 (328)
                      +|++.+++.|++|+++++|++|..+. ++++++|+++++++.||+||++++++++++++   ++.+++++
T Consensus       247 al~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~~V~~~g~~~~ad~VV~a~~~~~~~l~~~~~~~~~~~~i  316 (453)
T 2bcg_G          247 GFARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGVKTKLGTFKAPLVIADPTYFPEKCKSTGQRVIRAICI  316 (453)
T ss_dssp             HHHHHHHHTTCEEECSCCCCEEEEETTTTEEEEEEETTEEEECSCEEECGGGCGGGEEEEEEEEEEEEEE
T ss_pred             HHHHHHHHcCCEEECCCEEEEEEEECCCCeEEEEEECCeEEECCEEEECCCccchhhcccCCcceeEEEE
Confidence            99999999999999999999999762 46777888888899999999999999887754   35666666

>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A

Probab=100.00  E-value=1.8e-34  Score=260.85  Aligned_cols=300  Identities=62%  Similarity=1.091  Sum_probs=231.7

Q ss_pred             CCCcccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCcccccc-hHHHHhhhcCCCCCCCccCCCCCeEEecCcce
Q 020312            1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLN-LIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKF   79 (328)
Q Consensus         1 ~~~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~   79 (328)
                      |+.++||+|||||++||+||+.|+++|++|+|+|+++++||+++|.+ ....+..|..+..++..++...+|.+|+||++
T Consensus         3 ~~~~~~v~iiG~G~~gl~~a~~l~~~g~~v~~~e~~~~~gg~~~s~~~~~~g~~~~~~~~~~~~~~~~g~~~~~d~gP~~   82 (433)
T 1d5t_A            3 MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLEGPPETMGRGRDWNVDLIPKF   82 (433)
T ss_dssp             CCSBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTSCEECSHHHHHHHTTCTTCCCGGGCCGGGCCEESSCCB
T ss_pred             CCCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCccccccccccHHHHHhhccCCCCChhHhcccCceEEccCcce
Confidence            67789999999999999999999999999999999999999999987 43211112111123344556678999999999


Q ss_pred             EecCchHHHHHHhcCCCCeeEEEeeCceeEeeCCeEEEcCCCchhhhcCCCCChhhHHHHHHHHHHHhhcccCCCccccc
Q 020312           80 IIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEG  159 (328)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (328)
                      +...+.+.+.+.+.++.+++++...++.+.+.+|+.+.+|.+..+.+.+.+.+++++..+.+++..+.++....+..+..
T Consensus        83 l~~~~~l~~ll~~lgl~~~l~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~  162 (433)
T 1d5t_A           83 LMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVPSTETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEG  162 (433)
T ss_dssp             EETTSHHHHHHHHHTGGGGCCEEECCEEEEEETTEEEECCCSHHHHHHCSSSCHHHHHHHHHHHHHHHHCCTTCGGGGTT
T ss_pred             eeccchHHHHHHHcCCccceEEEEeCceEEeeCCEEEECCCCHHHHhhCcccChhhHHHHHHHHHHHHhhcccCchhccc
Confidence            99888888888888888888888877777778899999996645777888888887778888888877765433332222


Q ss_pred             ccCCCCCHHHHHHhcCCChhHHHHHhhhhhcccCCCCCCCchHHHHHHHHHHHHhhhcccCCCeEEeecCCcCcHHHHHH
Q 020312          160 MDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFA  239 (328)
Q Consensus       160 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~gG~~~l~~~l~  239 (328)
                      .+....|+.+++++++.++.+++++...++++....+...|...++.++..+..++..+ |..++++|+||++.++++|+
T Consensus       163 ~~~~~~s~~~~l~~~~~~~~l~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~s~~~~-g~~~~~~p~gG~~~l~~~l~  241 (433)
T 1d5t_A          163 VDPQNTSMRDVYRKFDLGQDVIDFTGHALALYRTDDYLDQPCLETINRIKLYSESLARY-GKSPYLYPLYGLGELPQGFA  241 (433)
T ss_dssp             CCTTTSBHHHHHHHTTCCHHHHHHHHHHTSCCSSSGGGGSBSHHHHHHHHHHHHSCCSS-SCCSEEEETTCTTHHHHHHH
T ss_pred             cccccCCHHHHHHHcCCCHHHHHHHHHHHHhccCCCccCCCHHHHHHHHHHHHHHHHhc-CCCcEEEeCcCHHHHHHHHH
Confidence            34567899999999999998888776555444434444445555555555665555444 55678899999999999999


Q ss_pred             HHHHHcCcEEEcCcceeEEEecCCCcEEEEEecCceEEcCEEEECCCCCcchhhh--hccceeEE
Q 020312          240 RLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKVII--IMLIGFIL  302 (328)
Q Consensus       240 ~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~~g~~~~ad~vV~~~~~~~~~~~~--~~~~~~~~  302 (328)
                      +.+++.|++|+++++|++|..+ ++++++|++++++++||+||+++++.+.++++  ...+++++
T Consensus       242 ~~~~~~G~~i~~~~~V~~I~~~-~~~v~~v~~~g~~~~ad~VV~a~~~~~~~~~~~~~~~~~~~i  305 (433)
T 1d5t_A          242 RLSAIYGGTYMLNKPVDDIIME-NGKVVGVKSEGEVARCKQLICDPSYVPDRVRKAGQVIRIICI  305 (433)
T ss_dssp             HHHHHHTCCCBCSCCCCEEEEE-TTEEEEEEETTEEEECSEEEECGGGCGGGEEEEEEEEEEEEE
T ss_pred             HHHHHcCCEEECCCEEEEEEEe-CCEEEEEEECCeEEECCEEEECCCCCcccccccCcceeEEEE
Confidence            9999999999999999999988 88888888888899999999999988876644  34445543

>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R*

Probab=100.00  E-value=7.1e-32  Score=249.35  Aligned_cols=285  Identities=31%  Similarity=0.614  Sum_probs=233.6

Q ss_pred             CCCcccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCcccccchHHHHh---hhcCC-------------------
Q 020312            1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWK---RFRGN-------------------   58 (328)
Q Consensus         1 ~~~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~~~~~---~~~~~-------------------   58 (328)
                      |+.+|||+|||+|+.|...|..|++.|++|+++|++++.||.+.+.++.++..   .++..                   
T Consensus         5 ~~~~~D~~i~GtGl~~~~~a~~~~~~g~~vl~id~~~~~gg~~~~~~l~~l~~w~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (650)
T 1vg0_A            5 LPSDFDVIVIGTGLPESIIAAACSRSGQRVLHVDSRSYYGGNWASFSFSGLLSWLKEYQENNDVVTENSMWQEQILENEE   84 (650)
T ss_dssp             CCSBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCEECHHHHHHHHHHTC----------CGGGGCCTTEE
T ss_pred             CCCcCCEEEECCcHHHHHHHHHHHhCCCEEEEEcCCCcccCccccccHHHHHHHHHHhhccccccccccchhhhhhcchh
Confidence            45679999999999999999999999999999999999999999999887765   33210                   


Q ss_pred             -------------------------------------------C--------------------------C---------
Q 020312           59 -------------------------------------------E--------------------------Q---------   60 (328)
Q Consensus        59 -------------------------------------------~--------------------------~---------   60 (328)
                                                                 .                          .         
T Consensus        85 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (650)
T 1vg0_A           85 AIPLSSKDKTIQHVEVFCYASQDLHKDVEEAGALQKNHASVTSAQSAEAAEAAETSCLPTAVEPLSMGSCEIPAEQSQCP  164 (650)
T ss_dssp             EEEBCSSCCCEEEEEEEECSCC----------------------------------------------------------
T ss_pred             hccccccccccccceeEeecccccccchhhcccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence                                                       0                          0         


Q ss_pred             -----------------------------------------CCCc--------cCCCCCeEEecCcceEecCchHHHHHH
Q 020312           61 -----------------------------------------PPAH--------LGSSRDYNVDMIPKFIIANGALVRVLI   91 (328)
Q Consensus        61 -----------------------------------------~~~~--------~~~~~~~~~~~g~~~~~~~~~~~~~~~   91 (328)
                                                               .|..        ++..++|.+|++|+++++.+.++..|.
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~i~~~~R~f~~DL~PklL~~~g~lv~LL~  244 (650)
T 1vg0_A          165 GPESSPEVNDAEATGKKENSDAKSSTEEPSENVPKVQDNTETPKKNRITYSQIIKEGRRFNIDLVSKLLYSRGLLIDLLI  244 (650)
T ss_dssp             ----------------------------------------------CCCHHHHHHTGGGCCEESSCCCEESSSHHHHHHH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccchhhhcccCCCeEEeeCCeeeeCCcHHHHHHH
Confidence                                                     0000        235689999999999999999999999


Q ss_pred             hcCCCCeeEEEeeCceeEeeCCeEEEcCCCchhhhcCCCCChhhHHHHHHHHHHHhhcccCCCcccccccCCCCCHHHHH
Q 020312           92 HTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELI  171 (328)
Q Consensus        92 ~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~  171 (328)
                      +.++.++++|+..+..|.+.+|+...+|.+..+.+.+.++++.+++.+.+|+.++.++.. .+..+.  .++..++.+|+
T Consensus       245 ~sgV~~yLEFk~v~~~y~~~~G~~~~VPas~~eif~s~~Lsl~EKr~L~kFl~~~~~~~~-~p~~~~--~~d~~S~~d~L  321 (650)
T 1vg0_A          245 KSNVSRYAEFKNITRILAFREGTVEQVPCSRADVFNSKQLTMVEKRMLMKFLTFCVEYEE-HPDEYR--AYEGTTFSEYL  321 (650)
T ss_dssp             HHTGGGGCCEEECCEEEEESSSSEEECCCSHHHHHHCSSSCHHHHHHHHHHHHHHHTGGG-CHHHHH--TTTTSBHHHHH
T ss_pred             HcCCcceeeEEEccceEEecCCCEeECCCCHHHHHhCcCCCHHHHHHHHHHHHHHHHhcc-ChHHHh--hhccCCHHHHH
Confidence            999999999999989899888889999998888899999999999999999998887553 221111  34678999999


Q ss_pred             HhcCCChhHHHHHhhhhhcccCCCCCCCchHHHHHHHHHHHHhhhcccCCCeEEeecCCcCcHHHHHHHHHHHcCcEEEc
Q 020312          172 AKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYML  251 (328)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~gG~~~l~~~l~~~~~~~G~~i~~  251 (328)
                      +++++++.++.++...+++....   ..+....+.++..+..++.++ |..++.+|+||++.|+++|++.++..|+++++
T Consensus       322 ~~~~ls~~L~~~L~~~lal~~~~---~~pa~~~l~~i~~~l~sl~~y-g~sg~~yp~GG~g~L~qaL~r~~~~~Gg~i~l  397 (650)
T 1vg0_A          322 KTQKLTPNLQYFVLHSIAMTSET---TSCTVDGLKATKKFLQCLGRY-GNTPFLFPLYGQGELPQCFCRMCAVFGGIYCL  397 (650)
T ss_dssp             TTSSSCHHHHHHHHHHTTC--CC---SCBHHHHHHHHHHHHHHTTSS-SSSSEEEETTCTTHHHHHHHHHHHHTTCEEES
T ss_pred             HHhCCCHHHHHHHHHHHhccCCC---CCchhHHHHHHHHHHHHHHhh-ccCceEEeCCchhHHHHHHHHHHHHcCCEEEe
Confidence            99999999988877655544322   124555555667777777776 66789999999999999999999999999999


Q ss_pred             CcceeEEEecCC--CcEEEEEe-cCceEEcCEEEECCCCCcchhh
Q 020312          252 NKPECKVEFDEE--GKVVGVTS-EGETAKCKKVVCDPSYLPNKVI  293 (328)
Q Consensus       252 ~~~V~~I~~~~~--~~v~~v~~-~g~~~~ad~vV~~~~~~~~~~~  293 (328)
                      +++|++|..+ +  |++++|++ +|+++.||+||+++.++|....
T Consensus       398 ~~~V~~I~~~-~~~g~v~gV~~~~Ge~i~A~~VVs~~~~lp~~~~  441 (650)
T 1vg0_A          398 RHSVQCLVVD-KESRKCKAVIDQFGQRIISKHFIIEDSYLSENTC  441 (650)
T ss_dssp             SCCEEEEEEE-TTTCCEEEEEETTSCEEECSEEEEEGGGBCTTTT
T ss_pred             CCEeeEEEEe-CCCCeEEEEEeCCCCEEEcCEEEEChhhcCHhHh
Confidence            9999999988 5  88999886 6899999999998888776554

>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}

Probab=99.97  E-value=8.6e-31  Score=241.82  Aligned_cols=276  Identities=18%  Similarity=0.239  Sum_probs=166.9

Q ss_pred             cEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCcccccchHHHHhhhcCCCCCCCccCCCCCeEEecCcceEecCch
Q 020312            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIANGA   85 (328)
Q Consensus         6 dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~   85 (328)
                      +|||||||++||+||++|+++|++|+|||+++++||+++|++.                    .+|.+|.|++++.....
T Consensus         3 ~VvVIGaG~~GL~aA~~La~~G~~V~VlEa~~~~GG~~~t~~~--------------------~G~~~D~G~~~~~~~~~   62 (501)
T 4dgk_A            3 PTTVIGAGFGGLALAIRLQAAGIPVLLLEQRDKPGGRAYVYED--------------------QGFTFDAGPTVITDPSA   62 (501)
T ss_dssp             CEEEECCHHHHHHHHHHHHHTTCCEEEECCC-------CEEEE--------------------TTEEEECSCCCBSCTHH
T ss_pred             CEEEECCcHHHHHHHHHHHHCCCcEEEEccCCCCCCcEEEEEe--------------------CCEEEecCceeecCchh
Confidence            7999999999999999999999999999999999999999865                    46999999999876543


Q ss_pred             HHHHHHhc--CCCCeeEEEeeCceeEe--eCCeEEEcCCCchhhhcCCCCChh--hHHHHHHHHHHHhhcccC-CCcccc
Q 020312           86 LVRVLIHT--DVTKYLYFKAVDGSFVY--NKGKVHKVPATDMEALKSPLMGIF--EKRRARKFFIYVQDYDEN-DPKTHE  158 (328)
Q Consensus        86 ~~~~~~~~--~~~~~l~~~~~~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~  158 (328)
                      ..+.+...  .+.+++++...++.+.+  .+|..+.++.. .+.+.+.+..++  +...+.+|.+.++..... ......
T Consensus        63 ~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (501)
T 4dgk_A           63 IEELFALAGKQLKEYVELLPVTPFYRLCWESGKVFNYDND-QTRLEAQIQQFNPRDVEGYRQFLDYSRAVFKEGYLKLGT  141 (501)
T ss_dssp             HHHHHHTTTCCGGGTCCEEEESSSEEEEETTSCEEEECSC-HHHHHHHHHHHCTHHHHHHHHHHHHHHHHTSSSCC--CC
T ss_pred             HHHHHHHhcchhhhceeeEecCcceEEEcCCCCEEEeecc-HHHHHHHHhhcCccccchhhhHHHHHHHhhhhhhhhccc
Confidence            33333322  34556667666665543  46777777743 444433222211  223345555555443211 100000


Q ss_pred             --------cc----cCC----CCCHHHHHHhcCCChhHHHHHhhhhhcccCCCCCCCchHHHHHHHHHHHHhhhcccCCC
Q 020312          159 --------GM----DLT----RVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGS  222 (328)
Q Consensus       159 --------~~----~~~----~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~  222 (328)
                              .+    ...    ..++.+++.++.-++.++.++.....+...... ..+....+   .   ..+.   ...
T Consensus       142 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~g~~p~-~~~~~~~~---~---~~~~---~~~  211 (501)
T 4dgk_A          142 VPFLSFRDMLRAAPQLAKLQAWRSVYSKVASYIEDEHLRQAFSFHSLLVGGNPF-ATSSIYTL---I---HALE---REW  211 (501)
T ss_dssp             CCCCCHHHHHHSGGGTTTSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHSCC---CCCTHHH---H---HHHH---SCC
T ss_pred             cccchhhhhhhhhhhhhhhhhcccHHHHHHHHhccHHHHhhhhhhhcccCCCcc-hhhhhhhh---h---hhhh---ccC
Confidence                    00    000    123445555554444444443211111111111 11111110   0   0011   233


Q ss_pred             eEEeecCCcCcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe-cCceEEcCEEEECCCCC-------cc----
Q 020312          223 PYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYL-------PN----  290 (328)
Q Consensus       223 ~~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~-~g~~~~ad~vV~~~~~~-------~~----  290 (328)
                      ..++|+||++.|+++|++.++++|++|++|++|++|+.+ ++++++|++ +|+++.||.||+++++.       ++    
T Consensus       212 G~~~p~GG~~~l~~aL~~~~~~~Gg~I~~~~~V~~I~~~-~~~~~gV~~~~g~~~~ad~VV~~a~~~~~~~~Ll~~~~~~  290 (501)
T 4dgk_A          212 GVWFPRGGTGALVQGMIKLFQDLGGEVVLNARVSHMETT-GNKIEAVHLEDGRRFLTQAVASNADVVHTYRDLLSQHPAA  290 (501)
T ss_dssp             CEEEETTHHHHHHHHHHHHHHHTTCEEECSCCEEEEEEE-TTEEEEEEETTSCEEECSCEEECCC---------------
T ss_pred             CeEEeCCCCcchHHHHHHHHHHhCCceeeecceeEEEee-CCeEEEEEecCCcEEEcCEEEECCCHHHHHHHhccccccc
Confidence            467899999999999999999999999999999999999 999999998 88999999999988762       11    


Q ss_pred             -----hhhh--hccceeEEeeeehhhhHHH
Q 020312          291 -----KVII--IMLIGFILIFLVRRILRFF  313 (328)
Q Consensus       291 -----~~~~--~~~~~~~~~~~~~~~~~~~  313 (328)
                           ++.+  .+.+.++++++++.....+
T Consensus       291 ~~~~~~~~~~~~~~s~~~~~~~l~~~~~~l  320 (501)
T 4dgk_A          291 VKQSNKLQTKRMSNSLFVLYFGLNHHHDQL  320 (501)
T ss_dssp             ------------CCEEEEEEEEESSCCTTS
T ss_pred             hhhhhhhhccccCCceeEEEecccCCcccc
Confidence                 1222  6889999999999886544

>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}

Probab=99.93  E-value=2.2e-24  Score=194.88  Aligned_cols=259  Identities=16%  Similarity=0.180  Sum_probs=163.1

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCcccccchHHHHhhhcCCCCCCCccCCCCCeEEecCcceEecC-
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIAN-   83 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-   83 (328)
                      +||+|||||++||+||++|+++|++|+|||+++++||++.++..                    .++.+|.|+.++... 
T Consensus         1 ~dVvVIGaGiaGLsaA~~La~~G~~V~vlE~~~~~GG~~~~~~~--------------------~G~~~d~G~~~~~~~~   60 (425)
T 3ka7_A            1 MKTVVIGAGLGGLLSAARLSKAGHEVEVFERLPITGGRFTNLSY--------------------KGFQLSSGAFHMLPNG   60 (425)
T ss_dssp             CEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSSBTTSSEEEE--------------------TTEEEESSSCSCBTTG
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCceEEEeCCCCCCCceeeecc--------------------CCcEEcCCCceEecCC
Confidence            58999999999999999999999999999999999999999764                    468899998665432 


Q ss_pred             --chHHHHHHhcCCCCeeEEEeeCceeEeeC-----------CeEEEcCCCchhhhcCCCCChhhHHHHHHHHHHHhhcc
Q 020312           84 --GALVRVLIHTDVTKYLYFKAVDGSFVYNK-----------GKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYD  150 (328)
Q Consensus        84 --~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-----------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (328)
                        ..+.+.+.+.+....+...  +.......           +..+.++.     +. ...+..++.   .+........
T Consensus        61 ~~~~~~~l~~~lg~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~-~~~~~~~~~---~~~~~~~~~~  129 (425)
T 3ka7_A           61 PGGPLACFLKEVEASVNIVRS--EMTTVRVPLKKGNPDYVKGFKDISFND-----FP-SLLSYKDRM---KIALLIVSTR  129 (425)
T ss_dssp             GGSHHHHHHHHTTCCCCEEEC--CCCEEEEESSTTCCSSTTCEEEEEGGG-----GG-GGSCHHHHH---HHHHHHHHTT
T ss_pred             CccHHHHHHHHhCCCceEEec--CCceEEeecCCCcccccccccceehhh-----hh-hhCCHHHHH---HHHHHHHhhh
Confidence              2344444455554332221  12122111           33333321     11 112222222   2222222111


Q ss_pred             cCCCcccccccCCCCCHHHHHHhcCCChhHHHHHhhhhhcccCCCCCCCchHHHHHHHHHHHHhhhcccCCCeEEeecCC
Q 020312          151 ENDPKTHEGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYG  230 (328)
Q Consensus       151 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~gG  230 (328)
                      ..        .....++.+|+++..-++..+.++.+........+....+....+..+..+    ... +  ...+++||
T Consensus       130 ~~--------~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~----~~~-~--~~~~~~gG  194 (425)
T 3ka7_A          130 KN--------RPSGSSLQAWIKSQVSDEWLIKFADSFCGWALSLKSDEVPVEEVFEIIENM----YRF-G--GTGIPEGG  194 (425)
T ss_dssp             TS--------CCCSSBHHHHHHHHCCCHHHHHHHHHHHHHHHSSCGGGSBHHHHHHHHHHH----HHH-C--SCEEETTS
T ss_pred             hc--------CCCCCCHHHHHHHhcCCHHHHHHHHHHHHHHhCCCcccchHHHHHHHHHHH----Hhc-C--CccccCCC
Confidence            00        114578999998875555455555443321111222122332222222221    111 2  23678999


Q ss_pred             cCcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEecCceEEcCEEEECCCC------Cc--------chh----
Q 020312          231 LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSY------LP--------NKV----  292 (328)
Q Consensus       231 ~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~~g~~~~ad~vV~~~~~------~~--------~~~----  292 (328)
                      ++.++++|++.++++|++|+++++|++|..+ ++++++|++++++++||.||++++.      ++        +..    
T Consensus       195 ~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~-~~~~~gv~~~g~~~~ad~VV~a~~~~~~~~ll~~~~~~~~~~~~~~~~  273 (425)
T 3ka7_A          195 CKGIIDALETVISANGGKIHTGQEVSKILIE-NGKAAGIIADDRIHDADLVISNLGHAATAVLCSEALSKEADAAYFKMV  273 (425)
T ss_dssp             HHHHHHHHHHHHHHTTCEEECSCCEEEEEEE-TTEEEEEEETTEEEECSEEEECSCHHHHHHHTTTTCCTTTTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCEEEECCceeEEEEE-CCEEEEEEECCEEEECCEEEECCCHHHHHHhcCCcccccCCHHHHHHh
Confidence            9999999999999999999999999999998 8888888888889999999998775      22        111    


Q ss_pred             hh-hccceeEEeeeehhhh
Q 020312          293 II-IMLIGFILIFLVRRIL  310 (328)
Q Consensus       293 ~~-~~~~~~~~~~~~~~~~  310 (328)
                      .+ ...+.++++++++..+
T Consensus       274 ~~~~~~~~~~v~l~~~~~~  292 (425)
T 3ka7_A          274 GTLQPSAGIKICLAADEPL  292 (425)
T ss_dssp             HHCCCBEEEEEEEEESSCS
T ss_pred             hCcCCCceEEEEeecCCCc
Confidence            12 3456788999998764

>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}

Probab=99.93  E-value=1.8e-24  Score=195.27  Aligned_cols=259  Identities=15%  Similarity=0.182  Sum_probs=164.1

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCcccccchHHHHhhhcCCCCCCCccCCCCCeEEecCcceEecC-
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIAN-   83 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-   83 (328)
                      +||+|||||++||+||++|+++|++|+|||+++++||++.+...                    .++.+|.|+.++... 
T Consensus         1 ~dVvVIGaGiaGLsaA~~La~~G~~V~vlE~~~~~GG~~~~~~~--------------------~g~~~d~G~~~~~~~~   60 (421)
T 3nrn_A            1 MRAVVVGAGLGGLLAGAFLARNGHEIIVLEKSAMIGGRFTNLPY--------------------KGFQLSTGALHMIPHG   60 (421)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTSSEEEE--------------------TTEEEESSSCSEETTT
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCCCceeEEecc--------------------CCEEEecCCeEEEccC
Confidence            48999999999999999999999999999999999999999864                    468999998766532 


Q ss_pred             --chHHHHHHhcCCCCeeEEEeeCc-eeEeeCCeEEEcCCCchhhhcCCCCChhhHHHHHHHHHHHhhcccCCCcccccc
Q 020312           84 --GALVRVLIHTDVTKYLYFKAVDG-SFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGM  160 (328)
Q Consensus        84 --~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (328)
                        ..+.+.+.+.+....  +...++ ...+.+|..+.++.. ...+.     ..++..+..+.......         ..
T Consensus        61 ~~~~~~~l~~~lg~~~~--~~~~~~~~~~~~~g~~~~~~~~-~~~l~-----~~~~~~~~~~~~~~~~~---------~~  123 (421)
T 3nrn_A           61 EDGPLAHLLRILGAKVE--IVNSNPKGKILWEGKIFHYRES-WKFLS-----VKEKAKALKLLAEIRMN---------KL  123 (421)
T ss_dssp             TSSHHHHHHHHHTCCCC--EEECSSSCEEEETTEEEEGGGG-GGGCC-------------CCHHHHHTT---------CC
T ss_pred             CChHHHHHHHHhCCcce--EEECCCCeEEEECCEEEEcCCc-hhhCC-----HhHHHHHHHHHHHHHhc---------cC
Confidence              234444444454322  333222 233347777776632 21111     11211222222222210         01


Q ss_pred             cCCCCCHHHHHHhcCCChhH-HHHHhhhhhcccCCCCCCCchHHHHHHHHHHHHhhhcccCCCeEEeecCCcCcHHHHHH
Q 020312          161 DLTRVTTRELIAKYGLDDNT-IDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFA  239 (328)
Q Consensus       161 ~~~~~s~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~gG~~~l~~~l~  239 (328)
                      +.+..++.+++++.+++... ..++.+.............+....+..+....    .. +  ...++++|++.++++|+
T Consensus       124 ~~~~~s~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-~--g~~~~~gG~~~l~~~l~  196 (421)
T 3nrn_A          124 PKEEIPADEWIKEKIGENEFLLSVLESFAGWADSVSLSDLTALELAKEIRAAL----RW-G--GPGLIRGGCKAVIDELE  196 (421)
T ss_dssp             CCCCSBHHHHHHHHTCCCHHHHHHHHHHHHHHHSSCGGGSBHHHHHHHHHHHH----HH-C--SCEEETTCHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCcccCCHHHHHHHHHHHh----hc-C--CcceecCCHHHHHHHHH
Confidence            12347899999988555543 45554433221122222223332332322221    11 2  24688999999999999


Q ss_pred             HHHHHcCcEEEcCcceeEEEecCCCcEEEEEecCceEEcCEEEECCCCC-----------cchh----hh-hccceeEEe
Q 020312          240 RLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYL-----------PNKV----II-IMLIGFILI  303 (328)
Q Consensus       240 ~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~~g~~~~ad~vV~~~~~~-----------~~~~----~~-~~~~~~~~~  303 (328)
                      +.++++|++|+++++|++|..+ ++++  |.+++++++||.||++++..           |+..    .+ ...+.++++
T Consensus       197 ~~~~~~G~~i~~~~~V~~i~~~-~~~v--V~~~g~~~~ad~Vv~a~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~v~  273 (421)
T 3nrn_A          197 RIIMENKGKILTRKEVVEINIE-EKKV--YTRDNEEYSFDVAISNVGVRETVKLIGRDYFDRDYLKQVDSIEPSEGIKFN  273 (421)
T ss_dssp             HHHHTTTCEEESSCCEEEEETT-TTEE--EETTCCEEECSEEEECSCHHHHHHHHCGGGSCHHHHHHHHTCCCCCEEEEE
T ss_pred             HHHHHCCCEEEcCCeEEEEEEE-CCEE--EEeCCcEEEeCEEEECCCHHHHHHhcCcccCCHHHHHHHhCCCCCceEEEE
Confidence            9999999999999999999987 6776  66688899999999987752           1111    22 344889999


Q ss_pred             eeehhhh
Q 020312          304 FLVRRIL  310 (328)
Q Consensus       304 ~~~~~~~  310 (328)
                      ++++...
T Consensus       274 l~~~~~~  280 (421)
T 3nrn_A          274 LAVPGEP  280 (421)
T ss_dssp             EEEESSC
T ss_pred             EEEcCCc
Confidence            9998873

>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*

Probab=99.93  E-value=1.2e-25  Score=207.92  Aligned_cols=271  Identities=15%  Similarity=0.107  Sum_probs=156.8

Q ss_pred             cccEEEECCChhHHHHHHhhhhC-CCeEEEeccCCCCCCcccccchHHHHhhhcCCCCCCCccCCCCCeEEecCcceEec
Q 020312            4 EYDVIVLGTGLKECILSGLLSVD-GLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIA   82 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~-G~~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~   82 (328)
                      ++||||||||++||+||++|+++ |++|+|||+++++||+++|...                   ..+|.+|.|+|++..
T Consensus        10 ~~DVvIIGaGisGLsaA~~L~k~~G~~V~VlE~~~~~GG~~~T~~~-------------------~~G~~~D~G~h~~~~   70 (513)
T 4gde_A           10 SVDVLVIGAGPTGLGAAKRLNQIDGPSWMIVDSNETPGGLASTDVT-------------------PEGFLYDVGGHVIFS   70 (513)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHCCSCEEEEESSSSCCGGGCEEEC-------------------TTSCEEESSCCCCCC
T ss_pred             CCCEEEECCcHHHHHHHHHHHhhCCCCEEEEECCCCCcCCeeeEEe-------------------cCCEEEEeCceEecC
Confidence            58999999999999999999984 9999999999999999998632                   146899999999987


Q ss_pred             CchHHHHHH-hcCCCCeeEEEeeCceeEeeCCeEEEcCCCchhhhcCCCCChhhHHHHHHHHHHHhhcccCCCccccccc
Q 020312           83 NGALVRVLI-HTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMD  161 (328)
Q Consensus        83 ~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (328)
                      ..+.+..++ +.......-.......+++.+|+.+..|...  .+.. +...........+..........        .
T Consensus        71 ~~~~v~~l~~e~~~~~~~~~~~~~~~~i~~~g~~~~~p~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~--------~  139 (513)
T 4gde_A           71 HYKYFDDCLDEALPKEDDWYTHQRISYVRCQGQWVPYPFQN--NISM-LPKEEQVKCIDGMIDAALEARVA--------N  139 (513)
T ss_dssp             CBHHHHHHHHHHSCSGGGEEEEECCEEEEETTEEEESSGGG--GGGG-SCHHHHHHHHHHHHHHHHHHHTC--------C
T ss_pred             CCHHHHHHHHHhCCccceeEEecCceEEEECCeEeecchhh--hhhh-cchhhHHHHHHHHHHHHHhhhcc--------c
Confidence            665544444 3332221112223445677789988887421  1111 00000111111222211111100        1


Q ss_pred             CCCCCHHHHHHhcCCChhH-HHHHhhhh-hccc-----------CCCCCCCchHHHHHHHHHHHHhhhcccCCCeEEee-
Q 020312          162 LTRVTTRELIAKYGLDDNT-IDFIGHAL-ALHR-----------DDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYP-  227 (328)
Q Consensus       162 ~~~~s~~~~~~~~~~~~~~-~~~~~~~~-~l~~-----------~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~-  227 (328)
                      ....++.+|+.+. +.+.+ ..++.+.. .++.           ...+............... .....+.....+.++ 
T Consensus       140 ~~~~s~~~~~~~~-~g~~l~~~~~~~~~~~~~~~~~~~ls~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  217 (513)
T 4gde_A          140 TKPKTFDEWIVRM-MGTGIADLFMRPYNFKVWAVPTTKMQCAWLGERVAAPNLKAVTTNVILG-KTAGNWGPNATFRFPA  217 (513)
T ss_dssp             SCCCSHHHHHHHH-HHHHHHHHTHHHHHHHHHSSCGGGBCSGGGCSSCCCCCHHHHHHHHHHT-CCCCSCBTTBEEEEES
T ss_pred             ccccCHHHHHHHh-hhhhhhhhhcchhhhhhccCChHHhhHHHHHHhhcccchhhhhhhhhhc-ccccccccccceeecc
Confidence            1346778876554 22222 22222211 1111           0111111111111111100 001111012334444 


Q ss_pred             cCCcCcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEecCceEEcCEEEECCCC------C-cchhh----h-h
Q 020312          228 LYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSY------L-PNKVI----I-I  295 (328)
Q Consensus       228 ~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~~g~~~~ad~vV~~~~~------~-~~~~~----~-~  295 (328)
                      +||+++++++|++.+++.|+++++|++|++|..+ ++.+  +..+|+++.||+||++++.      + ++...    . .
T Consensus       218 ~gG~~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~-~~~v--~~~~G~~~~ad~vI~t~P~~~l~~~l~~~~~~~~~~~l~  294 (513)
T 4gde_A          218 RGGTGGIWIAVANTLPKEKTRFGEKGKVTKVNAN-NKTV--TLQDGTTIGYKKLVSTMAVDFLAEAMNDQELVGLTKQLF  294 (513)
T ss_dssp             SSHHHHHHHHHHHTSCGGGEEESGGGCEEEEETT-TTEE--EETTSCEEEEEEEEECSCHHHHHHHTTCHHHHHHHTTCC
T ss_pred             cCCHHHHHHHHHHHHHhcCeeeecceEEEEEEcc-CCEE--EEcCCCEEECCEEEECCCHHHHHHhcCchhhHhhhhccc
Confidence            7999999999999999999999999999999987 6553  2348899999999999875      1 12111    1 4


Q ss_pred             ccceeEEeeeehhh
Q 020312          296 MLIGFILIFLVRRI  309 (328)
Q Consensus       296 ~~~~~~~~~~~~~~  309 (328)
                      ..+..+++++++..
T Consensus       295 y~~~~~v~l~~~~~  308 (513)
T 4gde_A          295 YSSTHVIGVGVRGS  308 (513)
T ss_dssp             EEEEEEEEEEEESS
T ss_pred             CCceEEEEEEEecc
Confidence            56667777877654

>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ...

Probab=99.93  E-value=1e-23  Score=195.22  Aligned_cols=278  Identities=18%  Similarity=0.196  Sum_probs=166.0

Q ss_pred             CCCcccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCcccccchHHHHhhhcCCCCCCCccCCCCCeEEecCcceE
Q 020312            1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFI   80 (328)
Q Consensus         1 ~~~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~   80 (328)
                      |+.++||+|||||++||+||++|+++|++|+|||+++++||++.|.+.+                   .++.+|+|++++
T Consensus         1 m~~~~~vvIIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GGr~~t~~~~-------------------~g~~~d~G~~~~   61 (520)
T 1s3e_A            1 MSNKCDVVVVGGGISGMAAAKLLHDSGLNVVVLEARDRVGGRTYTLRNQ-------------------KVKYVDLGGSYV   61 (520)
T ss_dssp             --CBCSEEEECCBHHHHHHHHHHHHTTCCEEEECSSSSSBTTCCEECCT-------------------TTSCEESSCCEE
T ss_pred             CCCCceEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCCceeecccC-------------------CCcccccCceEe
Confidence            6778999999999999999999999999999999999999999998641                   257889999999


Q ss_pred             ecCch-HHHHHHhcCCCCeeEEEeeCceeEeeCCeEEEcCCCchhhhcCCCCChhhHHHHHHHHHHHhhcccC----CCc
Q 020312           81 IANGA-LVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDEN----DPK  155 (328)
Q Consensus        81 ~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~  155 (328)
                      ....+ +.+.+.+.++..... ........+.+|+.+..+..    +.. ...........++...+.+....    .+.
T Consensus        62 ~~~~~~~~~l~~~lgl~~~~~-~~~~~~~~~~~g~~~~~~~~----~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (520)
T 1s3e_A           62 GPTQNRILRLAKELGLETYKV-NEVERLIHHVKGKSYPFRGP----FPP-VWNPITYLDHNNFWRTMDDMGREIPSDAPW  135 (520)
T ss_dssp             CTTCHHHHHHHHHTTCCEEEC-CCSSEEEEEETTEEEEECSS----SCC-CCSHHHHHHHHHHHHHHHHHHTTSCTTCGG
T ss_pred             cCCcHHHHHHHHHcCCcceec-ccCCceEEEECCEEEEecCC----CCC-CCCHHHHHHHHHHHHHHHHHHhhcCcCCCc
Confidence            86543 444444555543221 11112223346665554421    110 01111112233333333322111    110


Q ss_pred             cc-ccccCCCCCHHHHHHhcCCChhHHHHHhhhhhcccCCCCCCCchHHHHHHHHHH---HHhhhcccCCCeEEeecCCc
Q 020312          156 TH-EGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLY---AESIARFQGGSPYIYPLYGL  231 (328)
Q Consensus       156 ~~-~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~---~~~~~~~~g~~~~~~~~gG~  231 (328)
                      .. .....+..++.+|+++.+.++..+.++.+........+....+....+..+...   ...+... ....+.+++||+
T Consensus       136 ~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~s~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~gG~  214 (520)
T 1s3e_A          136 KAPLAEEWDNMTMKELLDKLCWTESAKQLATLFVNLCVTAETHEVSALWFLWYVKQCGGTTRIISTT-NGGQERKFVGGS  214 (520)
T ss_dssp             GSTTHHHHHTSBHHHHHHHHCSSHHHHHHHHHHHHHHHSSCTTTSBHHHHHHHHHTTTCHHHHHCST-TSTTSEEETTCT
T ss_pred             cccchhhhhccCHHHHHHhhCCCHHHHHHHHHHHhhhcCCChHHhHHHHHHHHHhhcCchhhhcccC-CCcceEEEeCCH
Confidence            00 001135689999999988888777766654321112222222332222111100   0001100 123457889999


Q ss_pred             CcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe-cCceEEcCEEEECCCCC-----------cchh----hh-
Q 020312          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYL-----------PNKV----II-  294 (328)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~-~g~~~~ad~vV~~~~~~-----------~~~~----~~-  294 (328)
                      +.++++|++.   .|++|++|++|++|..+ ++++. |++ +|++++||+||+++++.           |+..    .+ 
T Consensus       215 ~~l~~~l~~~---lg~~i~~~~~V~~i~~~-~~~v~-v~~~~g~~~~ad~VI~a~p~~~l~~l~~~p~lp~~~~~~i~~~  289 (520)
T 1s3e_A          215 GQVSERIMDL---LGDRVKLERPVIYIDQT-RENVL-VETLNHEMYEAKYVISAIPPTLGMKIHFNPPLPMMRNQMITRV  289 (520)
T ss_dssp             HHHHHHHHHH---HGGGEESSCCEEEEECS-SSSEE-EEETTSCEEEESEEEECSCGGGGGGSEEESCCCHHHHHHTTSC
T ss_pred             HHHHHHHHHH---cCCcEEcCCeeEEEEEC-CCeEE-EEECCCeEEEeCEEEECCCHHHHcceeeCCCCCHHHHHHHHhC
Confidence            9999999764   47899999999999987 66765 666 77899999999887651           2111    11 


Q ss_pred             hccceeEEeeeehhh
Q 020312          295 IMLIGFILIFLVRRI  309 (328)
Q Consensus       295 ~~~~~~~~~~~~~~~  309 (328)
                      ...+..++++.++..
T Consensus       290 ~~~~~~kv~l~~~~~  304 (520)
T 1s3e_A          290 PLGSVIKCIVYYKEP  304 (520)
T ss_dssp             CBCCEEEEEEECSSC
T ss_pred             CCcceEEEEEEeCCC
Confidence            344566778887765

>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}

Probab=99.92  E-value=2.8e-24  Score=197.04  Aligned_cols=272  Identities=15%  Similarity=0.129  Sum_probs=165.6

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCC--eEEEeccCCCCCCcccccchHHHHhhhcCCCCCCCccCCCCCeEEecCcceEec
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGL--KVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIA   82 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~--~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~   82 (328)
                      +||+|||||++||+||++|+++|+  +|+|||+++++||++++....                   .++.+|.|++++..
T Consensus         3 ~dVvVIGaGiaGLsaA~~L~~~G~~~~V~vlEa~~~~GG~~~t~~~~-------------------~g~~~d~G~~~~~~   63 (477)
T 3nks_A            3 RTVVVLGGGISGLAASYHLSRAPCPPKVVLVESSERLGGWIRSVRGP-------------------NGAIFELGPRGIRP   63 (477)
T ss_dssp             CEEEEECCBHHHHHHHHHHHTSSSCCEEEEECSSSSSBTTCCEEECT-------------------TSCEEESSCCCBCC
T ss_pred             ceEEEECCcHHHHHHHHHHHhCCCCCcEEEEeCCCCCCCceEEEecc-------------------CCeEEEeCCCcccC
Confidence            599999999999999999999999  999999999999999987531                   36889999998865


Q ss_pred             Cc----hHHHHHHhcCCCCeeEEEee-----CceeEeeCCeEEEcCCCchhhhcCCCCChhhHHHHHHHHHHHhhcccCC
Q 020312           83 NG----ALVRVLIHTDVTKYLYFKAV-----DGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDEND  153 (328)
Q Consensus        83 ~~----~~~~~~~~~~~~~~l~~~~~-----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (328)
                      ..    .+.+.+.+.++...+.....     ...+.+.+|..+.+|.. ...+...+..+ .....   ...+.+.....
T Consensus        64 ~~~~~~~~~~l~~~lgl~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~-~~~~~~~~~~~-~~~~~---~~~~~~~~~~~  138 (477)
T 3nks_A           64 AGALGARTLLLVSELGLDSEVLPVRGDHPAAQNRFLYVGGALHALPTG-LRGLLRPSPPF-SKPLF---WAGLRELTKPR  138 (477)
T ss_dssp             CHHHHHHHHHHHHHTTCGGGEEEECTTSHHHHCEEEEETTEEEECCCS-SCC---CCTTS-CSCSS---HHHHTTTTSCC
T ss_pred             CCcccHHHHHHHHHcCCcceeeecCCCCchhcceEEEECCEEEECCCC-hhhcccccchh-hhHHH---HHHHHhhhcCC
Confidence            42    23444555666554333221     12466678888888754 22221111111 10001   11122221110


Q ss_pred             CcccccccCCCCCHHHHHHhcCCChhH-HHHHhhhhh-cccCCCCCCCchHHHHHHHHHHH---Hh-----hhc------
Q 020312          154 PKTHEGMDLTRVTTRELIAKYGLDDNT-IDFIGHALA-LHRDDRYLNEPALDTVKRMKLYA---ES-----IAR------  217 (328)
Q Consensus       154 ~~~~~~~~~~~~s~~~~~~~~~~~~~~-~~~~~~~~~-l~~~~~~~~~~~~~~l~~~~~~~---~~-----~~~------  217 (328)
                            ...+..++.+|+++. +.... ..++.+... ++. .+....+....+..+....   .+     +..      
T Consensus       139 ------~~~~~~s~~~~~~~~-~g~~~~~~~~~~~~~~~~~-~~~~~ls~~~~~~~l~~~e~~~gsl~~~~~~~~~~~~~  210 (477)
T 3nks_A          139 ------GKEPDETVHSFAQRR-LGPEVASLAMDSLCRGVFA-GNSRELSIRSCFPSLFQAEQTHRSILLGLLLGAGRTPQ  210 (477)
T ss_dssp             ------CCSSCCBHHHHHHHH-HCHHHHHHTHHHHHHHHHS-SCTTTBBHHHHCHHHHHHHHHHSCHHHHHHHC-----C
T ss_pred             ------CCCCCcCHHHHHHHh-hCHHHHHHHHHHHhccccc-CCHHHhhHHHHHHHHHHHHHHcCCHHHHHHHhcccccC
Confidence                  012557899998874 33433 334444332 221 2222222222211111110   00     000      


Q ss_pred             ---------ccCCCeEEeecCCcCcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEecCceEEcCEEEECCCC-
Q 020312          218 ---------FQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSY-  287 (328)
Q Consensus       218 ---------~~g~~~~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~~g~~~~ad~vV~~~~~-  287 (328)
                               ......+++++||++.++++|++.+++.|++|+++++|++|..+ +++++.|+++++++.||+||++++. 
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~l~~~g~~i~~~~~V~~i~~~-~~~~~~v~~~~~~~~ad~vv~a~p~~  289 (477)
T 3nks_A          211 PDSALIRQALAERWSQWSLRGGLEMLPQALETHLTSRGVSVLRGQPVCGLSLQ-AEGRWKVSLRDSSLEADHVISAIPAS  289 (477)
T ss_dssp             CCCHHHHHHHHTTCSEEEETTCTTHHHHHHHHHHHHTTCEEECSCCCCEEEEC-GGGCEEEECSSCEEEESEEEECSCHH
T ss_pred             CchhhhhhhcccCccEEEECCCHHHHHHHHHHHHHhcCCEEEeCCEEEEEEEc-CCceEEEEECCeEEEcCEEEECCCHH
Confidence                     00123578999999999999999999999999999999999987 5554567777778999999988765 


Q ss_pred             -----Cc---chh----hh-hccceeEEeeeehhh
Q 020312          288 -----LP---NKV----II-IMLIGFILIFLVRRI  309 (328)
Q Consensus       288 -----~~---~~~----~~-~~~~~~~~~~~~~~~  309 (328)
                           ++   +.+    .. ...+..+++++++..
T Consensus       290 ~~~~ll~~~~~~~~~~l~~~~~~~~~~v~l~~~~~  324 (477)
T 3nks_A          290 VLSELLPAEAAPLARALSAITAVSVAVVNLQYQGA  324 (477)
T ss_dssp             HHHHHSCGGGHHHHHHHHTCCEEEEEEEEEEETTC
T ss_pred             HHHHhccccCHHHHHHHhcCCCCcEEEEEEEECCC
Confidence                 12   111    11 445556777777664

>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*

Probab=99.92  E-value=3.1e-24  Score=197.70  Aligned_cols=275  Identities=17%  Similarity=0.126  Sum_probs=166.6

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCcccccchHHHHhhhcCCCCCCCccCCCCCeEEecCcceEecCc
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIANG   84 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~   84 (328)
                      +||+|||||++||+||++|+++|++|+|||+++++||++.|.+.                    .++.+|+|++++....
T Consensus        40 ~~v~iiGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GGr~~t~~~--------------------~g~~~d~G~~~~~~~~   99 (495)
T 2vvm_A           40 WDVIVIGGGYCGLTATRDLTVAGFKTLLLEARDRIGGRSWSSNI--------------------DGYPYEMGGTWVHWHQ   99 (495)
T ss_dssp             EEEEEECCBHHHHHHHHHHHHTTCCEEEECSSSBSBTTCCEEEE--------------------TTEEEECSCCCBCTTS
T ss_pred             CCEEEECCcHHHHHHHHHHHHCCCCEEEEeCCCCCCCcceeccc--------------------CCeeecCCCeEecCcc
Confidence            89999999999999999999999999999999999999999864                    4688999999987554


Q ss_pred             -hHHHHHHhcCCCCeeEEEe----eCceeEeeC--CeEEEcCCCchhhhcCCCCChhhHHHHHHHHHHHh-hcccCCCcc
Q 020312           85 -ALVRVLIHTDVTKYLYFKA----VDGSFVYNK--GKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQ-DYDENDPKT  156 (328)
Q Consensus        85 -~~~~~~~~~~~~~~l~~~~----~~~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  156 (328)
                       .+.+.+.+.++...+....    ....+.+.+  +....+|..+   ...    .+. ..+..+.+... ......+..
T Consensus       100 ~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~----~~~-~~~~~~~~~~~~~~~~~~~~~  171 (495)
T 2vvm_A          100 SHVWREITRYKMHNALSPSFNFSRGVNHFQLRTNPTTSTYMTHEA---EDE----LLR-SALHKFTNVDGTNGRTVLPFP  171 (495)
T ss_dssp             HHHHHHHHHTTCTTCEEESCCCSSSCCEEEEESSTTCCEEECHHH---HHH----HHH-HHHHHHHCSSSSTTTTTCSCT
T ss_pred             HHHHHHHHHcCCcceeecccccCCCceEEEecCCCCceeecCHHH---HHH----HHH-HHHHHHHccchhhhhhcCCCC
Confidence             4455555566654443332    112333333  4444444211   100    011 01112221000 000000000


Q ss_pred             cc------cccCCCCCHHHHHHhcC--CChhHHHHHhhhhhcccCCCCCCCchHHHHHHHHHHHHhhhcccCCCeEEeec
Q 020312          157 HE------GMDLTRVTTRELIAKYG--LDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPL  228 (328)
Q Consensus       157 ~~------~~~~~~~s~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~  228 (328)
                      ..      ....+..|+.+|+++.+  +++..+.++.+.+......+....+....+..+......+..+......++++
T Consensus       172 ~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (495)
T 2vvm_A          172 HDMFYVPEFRKYDEMSYSERIDQIRDELSLNERSSLEAFILLCSGGTLENSSFGEFLHWWAMSGYTYQGCMDCLMSYKFK  251 (495)
T ss_dssp             TSTTSSTTHHHHHTSBHHHHHHHHGGGCCHHHHHHHHHHHHHHHSSCTTTSBHHHHHHHHHHTTSSHHHHHHHHHSEEET
T ss_pred             CCcccCcchhhhhhhhHHHHHHHhhccCCHHHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHcCCCHHHHHhhhceEEeC
Confidence            00      01234679999999887  77777666665543322223323343333322211100000000012346789


Q ss_pred             CCcCcHHHHHHHHHHHcC-cEEEcCcceeEEEecCCCcEEEEEe-cCceEEcCEEEECCCCC-----------cchhh--
Q 020312          229 YGLGELPQAFARLSAVYG-GTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYL-----------PNKVI--  293 (328)
Q Consensus       229 gG~~~l~~~l~~~~~~~G-~~i~~~~~V~~I~~~~~~~v~~v~~-~g~~~~ad~vV~~~~~~-----------~~~~~--  293 (328)
                      ||++.++++|++.+++.| ++|+++++|++|..+ ++.+ .|++ +|++++||+||+++++.           |+...  
T Consensus       252 gG~~~l~~~l~~~l~~~g~~~i~~~~~V~~i~~~-~~~v-~v~~~~g~~~~ad~vI~a~~~~~l~~i~~~p~lp~~~~~a  329 (495)
T 2vvm_A          252 DGQSAFARRFWEEAAGTGRLGYVFGCPVRSVVNE-RDAA-RVTARDGREFVAKRVVCTIPLNVLSTIQFSPALSTERISA  329 (495)
T ss_dssp             TCHHHHHHHHHHHHHTTTCEEEESSCCEEEEEEC-SSSE-EEEETTCCEEEEEEEEECCCGGGGGGSEEESCCCHHHHHH
T ss_pred             CCHHHHHHHHHHHhhhcCceEEEeCCEEEEEEEc-CCEE-EEEECCCCEEEcCEEEECCCHHHHhheeeCCCCCHHHHHH
Confidence            999999999999999998 999999999999987 5664 4566 66789999999887651           21111  


Q ss_pred             --h-hccceeEEeeeehhh
Q 020312          294 --I-IMLIGFILIFLVRRI  309 (328)
Q Consensus       294 --~-~~~~~~~~~~~~~~~  309 (328)
                        . ...+..++++.++..
T Consensus       330 i~~~~~~~~~kv~l~~~~~  348 (495)
T 2vvm_A          330 MQAGHVSMCTKVHAEVDNK  348 (495)
T ss_dssp             HHHCCCCCCEEEEEEESCG
T ss_pred             HHhcCCCceeEEEEEECCc
Confidence              1 344666888887764

>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*

Probab=99.92  E-value=3.5e-23  Score=189.79  Aligned_cols=269  Identities=12%  Similarity=0.070  Sum_probs=166.1

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCcccccchHHHHhhhcCCCCCCCccCCCCCeEEecCcceEecC
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIAN   83 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~   83 (328)
                      ++||+|||||++||+||++|+++|++|+|||+++++||++.|.+.                    .++.+|.|++++...
T Consensus        16 ~~~v~iiG~G~~Gl~aa~~l~~~g~~v~v~E~~~~~GGr~~t~~~--------------------~g~~~~~g~~~~~~~   75 (478)
T 2ivd_A           16 GMNVAVVGGGISGLAVAHHLRSRGTDAVLLESSARLGGAVGTHAL--------------------AGYLVEQGPNSFLDR   75 (478)
T ss_dssp             -CCEEEECCBHHHHHHHHHHHTTTCCEEEECSSSSSBTTCCEEEE--------------------TTEEEESSCCCEETT
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCCCceeeeecc--------------------CCeeeecChhhhhhh
Confidence            589999999999999999999999999999999999999999865                    468899999999875


Q ss_pred             chH-HHHHHhcCCCCeeEEEe--eCceeEeeCCeEEEcCCCchhhhcCCCCChhhHHHHHHHHHHHhhcccCCCcccccc
Q 020312           84 GAL-VRVLIHTDVTKYLYFKA--VDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGM  160 (328)
Q Consensus        84 ~~~-~~~~~~~~~~~~l~~~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (328)
                      ++. .+.+.+.++...+....  ....+.+.+|+.+.+|....+.+...+..+.+   ..+   .+.+......     .
T Consensus        76 ~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~---~~~---~~~~~~~~~~-----~  144 (478)
T 2ivd_A           76 EPATRALAAALNLEGRIRAADPAAKRRYVYTRGRLRSVPASPPAFLASDILPLGA---RLR---VAGELFSRRA-----P  144 (478)
T ss_dssp             CHHHHHHHHHTTCGGGEECSCSSCCCEEEEETTEEEECCCSHHHHHTCSSSCHHH---HHH---HHGGGGCCCC-----C
T ss_pred             hHHHHHHHHHcCCcceeeecCccccceEEEECCEEEECCCCHHHhccCCCCCHHH---HHH---HhhhhhcCCC-----C
Confidence            544 44444566654443222  12345567888888885533333333333221   111   2222211110     0


Q ss_pred             cCCCCCHHHHHHhcCCChhH-HHHHhhhhhcccCCCCCCCchHHHHHHHHHHHH-------hhh-c----------ccCC
Q 020312          161 DLTRVTTRELIAKYGLDDNT-IDFIGHALALHRDDRYLNEPALDTVKRMKLYAE-------SIA-R----------FQGG  221 (328)
Q Consensus       161 ~~~~~s~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~-------~~~-~----------~~g~  221 (328)
                      ..+..++.+|+++. +.+.. ..++.+........+....+....+..+..+..       .+. .          ....
T Consensus       145 ~~~~~s~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (478)
T 2ivd_A          145 EGVDESLAAFGRRH-LGHRATQVLLDAVQTGIYAGDVEQLSVAATFPMLVKMEREHRSLILGAIRAQKAQRQAALPAGTA  223 (478)
T ss_dssp             TTCCCBHHHHHHHH-TCHHHHHHTHHHHHHHHHCCCTTTBBHHHHCHHHHHHHHHHSSHHHHHHHHHHHHTCC----CCS
T ss_pred             CCCCCCHHHHHHHh-hCHHHHHHHHHHHhceeecCCHHHhhHHHHhHHHHHHHHhcCcHHHHHHHhhhccccccCccccc
Confidence            23568999999876 44544 444444332211222212222222222111100       000 0          0012


Q ss_pred             ----CeEEeecCCcCcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe----cCceEEcCEEEECCCCC-----
Q 020312          222 ----SPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS----EGETAKCKKVVCDPSYL-----  288 (328)
Q Consensus       222 ----~~~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~----~g~~~~ad~vV~~~~~~-----  288 (328)
                          ..+++++||++.++++|++.+   |++|+++++|++|..+ +++ +.|++    ++++++||+||++++..     
T Consensus       224 ~~~~~~~~~~~gG~~~l~~~l~~~l---g~~i~~~~~V~~i~~~-~~~-~~v~~~~~~~g~~~~ad~vV~a~~~~~~~~l  298 (478)
T 2ivd_A          224 PKLSGALSTFDGGLQVLIDALAASL---GDAAHVGARVEGLARE-DGG-WRLIIEEHGRRAELSVAQVVLAAPAHATAKL  298 (478)
T ss_dssp             CCCCCCEEEETTCTHHHHHHHHHHH---GGGEESSEEEEEEECC---C-CEEEEEETTEEEEEECSEEEECSCHHHHHHH
T ss_pred             ccccccEEEECCCHHHHHHHHHHHh---hhhEEcCCEEEEEEec-CCe-EEEEEeecCCCceEEcCEEEECCCHHHHHHH
Confidence                567899999999999998665   6899999999999987 555 44553    66789999999987651     


Q ss_pred             ----cchh----hh-hccceeEEeeeehhh
Q 020312          289 ----PNKV----II-IMLIGFILIFLVRRI  309 (328)
Q Consensus       289 ----~~~~----~~-~~~~~~~~~~~~~~~  309 (328)
                          |+..    .. ...+.++++++++..
T Consensus       299 l~~l~~~~~~~l~~~~~~~~~~v~l~~~~~  328 (478)
T 2ivd_A          299 LRPLDDALAALVAGIAYAPIAVVHLGFDAG  328 (478)
T ss_dssp             HTTTCHHHHHHHHTCCBCCEEEEEEEECTT
T ss_pred             hhccCHHHHHHHhcCCCCcEEEEEEEEccc
Confidence                2211    11 345677888888764

>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}

Probab=99.89  E-value=5e-23  Score=188.32  Aligned_cols=272  Identities=11%  Similarity=0.123  Sum_probs=155.9

Q ss_pred             CCC-cccEEEECCChhHHHHHHhhhhCC------CeEEEeccCCCCCCcccccchHHHHhhhcCCCCCCCccCCCCCeEE
Q 020312            1 MDE-EYDVIVLGTGLKECILSGLLSVDG------LKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNV   73 (328)
Q Consensus         1 ~~~-~~dvvIvG~G~aGl~aA~~L~~~G------~~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~   73 (328)
                      |.. .+||+|||||++||+||++|+++|      ++|+|||+++++||++.|...                    .++.+
T Consensus         1 M~~~~~dVvIIGaGiaGLsaA~~L~~~G~~~~~~~~V~vlEa~~~~GG~~~s~~~--------------------~g~~~   60 (470)
T 3i6d_A            1 MSDGKKHVVIIGGGITGLAAAFYMEKEIKEKNLPLELTLVEASPRVGGKIQTVKK--------------------DGYII   60 (470)
T ss_dssp             ----CEEEEEECCSHHHHHHHHHHHHHHTTTTCSEEEEEECSSSSSCTTCCEECC--------------------TTCCE
T ss_pred             CCCCCCcEEEECCCHHHHHHHHHHHHhccccCCCCCEEEEECCCCCCceEEEecc--------------------CCEEe
Confidence            443 489999999999999999999999      999999999999999999854                    46788


Q ss_pred             ecCcceEecCc-hHHHHHHhcCCCCeeEEEeeCceeEeeCCeEEEcCCCchhhhc--------CCCCChhhHHHHHHHHH
Q 020312           74 DMIPKFIIANG-ALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALK--------SPLMGIFEKRRARKFFI  144 (328)
Q Consensus        74 ~~g~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~  144 (328)
                      |.|++++.... .+.+.+.+.++...+........+.+.++....+|......+.        ..+.....+  .....+
T Consensus        61 d~G~~~~~~~~~~~~~l~~~lgl~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~--~~~~~~  138 (470)
T 3i6d_A           61 ERGPDSFLERKKSAPQLVKDLGLEHLLVNNATGQSYVLVNRTLHPMPKGAVMGIPTKIAPFVSTGLFSLSGK--ARAAMD  138 (470)
T ss_dssp             ESSCCCEETTCTHHHHHHHHTTCCTTEEECCCCCEEEECSSCEEECCC---------------------CCS--HHHHHH
T ss_pred             ccChhhhhhCCHHHHHHHHHcCCcceeecCCCCccEEEECCEEEECCCCcccCCcCchHHhhccCcCCHHHH--HHHhcC
Confidence            99998887654 4455555667766554332344566667777776643211111        111111110  111111


Q ss_pred             HHhhcccCCCcccccccCCCCCHHHHHHhcCCChhH-HHHHhhhh-hcccCCCCCCCchHHHHHHHH-------HHHHhh
Q 020312          145 YVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDNT-IDFIGHAL-ALHRDDRYLNEPALDTVKRMK-------LYAESI  215 (328)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~-~~~~~~~~-~l~~~~~~~~~~~~~~l~~~~-------~~~~~~  215 (328)
                      .....         ....+..++.+|+++. +.... ..++.+.. .++. .+....+....+..+.       .....+
T Consensus       139 ~~~~~---------~~~~~~~s~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~~~~~~~~~~~~~~~~~  207 (470)
T 3i6d_A          139 FILPA---------SKTKDDQSLGEFFRRR-VGDEVVENLIEPLLSGIYA-GDIDKLSLMSTFPQFYQTEQKHRSLILGM  207 (470)
T ss_dssp             HHSCC---------CSSSSCCBHHHHHHHH-SCHHHHHHTHHHHHHHTTC-SCTTTBBHHHHCGGGCC------------
T ss_pred             cccCC---------CCCCCCcCHHHHHHHh-cCHHHHHHhccchhcEEec-CCHHHhhHHHHHHHHHHHHHhcCcHHHHH
Confidence            11100         0122568899999875 44443 34444433 2221 1111111111100000       000000


Q ss_pred             hc-----------ccCCCeEEeecCCcCcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe-cCceEEcCEEEE
Q 020312          216 AR-----------FQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVC  283 (328)
Q Consensus       216 ~~-----------~~g~~~~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~-~g~~~~ad~vV~  283 (328)
                      ..           ......++++++|++.++++|++.+.+  ++|+++++|++|..+ ++.+ .|++ +|++++||+||+
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~l~~--~~i~~~~~V~~i~~~-~~~~-~v~~~~g~~~~ad~vi~  283 (470)
T 3i6d_A          208 KKTRPQGSGQQLTAKKQGQFQTLSTGLQTLVEEIEKQLKL--TKVYKGTKVTKLSHS-GSCY-SLELDNGVTLDADSVIV  283 (470)
T ss_dssp             -------------------EEEETTCTHHHHHHHHHTCCS--EEEECSCCEEEEEEC-SSSE-EEEESSSCEEEESEEEE
T ss_pred             HhhccccccccccccCCceEEEeCChHHHHHHHHHHhcCC--CEEEeCCceEEEEEc-CCeE-EEEECCCCEEECCEEEE
Confidence            00           000236788899999999999866543  799999999999988 6664 4666 777899999998


Q ss_pred             CCCCC-------cchh----hh-hccceeEEeeeehhh
Q 020312          284 DPSYL-------PNKV----II-IMLIGFILIFLVRRI  309 (328)
Q Consensus       284 ~~~~~-------~~~~----~~-~~~~~~~~~~~~~~~  309 (328)
                      +++..       ++++    .. ...+..++++.++..
T Consensus       284 a~p~~~~~~l~~~~~~~~~~~~~~~~~~~~v~l~~~~~  321 (470)
T 3i6d_A          284 TAPHKAAAGMLSELPAISHLKNMHSTSVANVALGFPEG  321 (470)
T ss_dssp             CSCHHHHHHHTTTSTTHHHHHTCEEEEEEEEEEEESST
T ss_pred             CCCHHHHHHHcCCchhhHHHhcCCCCceEEEEEEECch
Confidence            87641       1111    12 345566677776654

>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum}

Probab=99.89  E-value=6e-22  Score=181.46  Aligned_cols=272  Identities=12%  Similarity=0.164  Sum_probs=165.4

Q ss_pred             CcccEEEECCChhHHHHHHhhhhCC--CeEEEeccCCCCCCcccccchHHHHhhhcCCCCCCCccCCCCCeEEecCcceE
Q 020312            3 EEYDVIVLGTGLKECILSGLLSVDG--LKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFI   80 (328)
Q Consensus         3 ~~~dvvIvG~G~aGl~aA~~L~~~G--~~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~   80 (328)
                      ..+||+|||||++||+||++|+++|  ++|+|||+++++||++.+.+.                    .++.+|.|++++
T Consensus         3 ~~~~v~IiGaG~~Gl~~A~~L~~~g~~~~v~v~E~~~~~GG~~~~~~~--------------------~g~~~~~g~~~~   62 (475)
T 3lov_A            3 SSKRLVIVGGGITGLAAAYYAERAFPDLNITLLEAGERLGGKVATYRE--------------------DGFTIERGPDSY   62 (475)
T ss_dssp             CSCEEEEECCBHHHHHHHHHHHHHCTTSEEEEECSSSSSBTTCCEECS--------------------TTCCEESSCCCE
T ss_pred             CcccEEEECCCHHHHHHHHHHHHhCCCCCEEEEECCCCCCceeEEEee--------------------CCEEEecCchhh
Confidence            3689999999999999999999999  999999999999999998854                    467889999888


Q ss_pred             ecCc-hHHHHHHhcCCCCeeEEEeeCceeEeeCCeEEEcCCCc--------hhhhcCCCCChhhHHHHHHHHHHHhhccc
Q 020312           81 IANG-ALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATD--------MEALKSPLMGIFEKRRARKFFIYVQDYDE  151 (328)
Q Consensus        81 ~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (328)
                      .... .+.+.+.+.++...+........+.+.++....+|...        ...+...+.....+.   .+.........
T Consensus        63 ~~~~~~~~~l~~~lg~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~p~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~  139 (475)
T 3lov_A           63 VARKHILTDLIEAIGLGEKLVRNNTSQAFILDTGGLHPIPKGAVMGIPTDLDLFRQTTLLTEEEKQ---EVADLLLHPSD  139 (475)
T ss_dssp             ETTSTHHHHHHHHTTCGGGEEECCCCCEEEEETTEEEECCSSEETTEESCHHHHTTCSSSCHHHHH---HHHHHHHSCCT
T ss_pred             hcccHHHHHHHHHcCCcceEeecCCCceEEEECCEEEECCCcccccCcCchHHHhhccCCChhHHH---HhhCcccCCcc
Confidence            7654 44555556677665543324445667788888776432        222233444433221   22222221111


Q ss_pred             CCCcccccccCCCCCHHHHHHhcCCChhH-HHHHhhhh-hcccCCCCCCCchHHHHHHHHHH-------HHhhhccc---
Q 020312          152 NDPKTHEGMDLTRVTTRELIAKYGLDDNT-IDFIGHAL-ALHRDDRYLNEPALDTVKRMKLY-------AESIARFQ---  219 (328)
Q Consensus       152 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~-~~~~~~~~-~l~~~~~~~~~~~~~~l~~~~~~-------~~~~~~~~---  219 (328)
                      .     .....+..++.+|+++. +.... ..++.+.. ..+. .+....+....+..+..+       ...+....   
T Consensus       140 ~-----~~~~~~~~s~~~~l~~~-~~~~~~~~~~~~~~~~~~~-~~~~~ls~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  212 (475)
T 3lov_A          140 S-----LRIPEQDIPLGEYLRPR-LGDALVEKLIEPLLSGIYA-GNIDQMSTFATYPQFVANEQKAGSLFEGMRLMRPLD  212 (475)
T ss_dssp             T-----CCCCSSCCBHHHHHHHH-HCHHHHHHTHHHHHHGGGC-CCTTTSBSTTTCHHHHHHHHHHSSHHHHHHHTCC--
T ss_pred             c-----ccCCCCCcCHHHHHHHH-hCHHHHHHHHHHHhceeec-CChHHcCHHHHHHHHHHHHHhcCcHHHHHHHhcccc
Confidence            0     00022568899999875 33443 44444433 2222 111111111111111100       00100000   


Q ss_pred             -----------CCCeEEeecCCcCcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe-cCceEEcCEEEECCCC
Q 020312          220 -----------GGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSY  287 (328)
Q Consensus       220 -----------g~~~~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~-~g~~~~ad~vV~~~~~  287 (328)
                                 ....++++++|++.++++|++.+.+  ++|+++++|++|..+ ++.+ .|++ +| +++||+||++++.
T Consensus       213 ~~~~~~~~~~~~~~~~~~~~~G~~~l~~~l~~~l~~--~~i~~~~~V~~i~~~-~~~~-~v~~~~g-~~~ad~vV~a~p~  287 (475)
T 3lov_A          213 QLPQTPQTTIKATGQFLSLETGLESLIERLEEVLER--SEIRLETPLLAISRE-DGRY-RLKTDHG-PEYADYVLLTIPH  287 (475)
T ss_dssp             ------------CCSEEEETTCHHHHHHHHHHHCSS--CEEESSCCCCEEEEE-TTEE-EEECTTC-CEEESEEEECSCH
T ss_pred             cccccccccccCCCcEEeeCChHHHHHHHHHhhccC--CEEEcCCeeeEEEEe-CCEE-EEEECCC-eEECCEEEECCCH
Confidence                       1356788999999999999876543  799999999999987 6654 4676 55 8999999988764


Q ss_pred             C------cc----hhhh-hccceeEEeeeehhh
Q 020312          288 L------PN----KVII-IMLIGFILIFLVRRI  309 (328)
Q Consensus       288 ~------~~----~~~~-~~~~~~~~~~~~~~~  309 (328)
                      .      +.    .+.. ...+..++++.++..
T Consensus       288 ~~~~~ll~~~~~~~~~~~~~~~~~~v~l~~~~~  320 (475)
T 3lov_A          288 PQVVQLLPDAHLPELEQLTTHSTATVTMIFDQQ  320 (475)
T ss_dssp             HHHHHHCTTSCCHHHHTCCEEEEEEEEEEEECC
T ss_pred             HHHHHHcCccCHHHHhcCCCCeEEEEEEEECCc
Confidence            1      11    1112 344556677776654

>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A*

Probab=99.89  E-value=7.2e-22  Score=179.84  Aligned_cols=254  Identities=17%  Similarity=0.215  Sum_probs=148.2

Q ss_pred             CC-CcccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCcccccchHHHHhhhcCCCCCCCccCCCCCeEEecCcce
Q 020312            1 MD-EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKF   79 (328)
Q Consensus         1 ~~-~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~   79 (328)
                      |+ .++||+|||||++||+||++|+++|++|+|||+++++||++.+...                    .++.+|.|+++
T Consensus         1 m~~~~~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~GG~~~~~~~--------------------~g~~~~~g~~~   60 (453)
T 2yg5_A            1 VPTLQRDVAIVGAGPSGLAAATALRKAGLSVAVIEARDRVGGRTWTDTI--------------------DGAVLEIGGQW   60 (453)
T ss_dssp             -CEEEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTCCEEEE--------------------TTEEEECSCCC
T ss_pred             CCCCcCCEEEECCCHHHHHHHHHHHHCCCcEEEEECCCCCCCceecccc--------------------CCceeccCCeE
Confidence            44 4689999999999999999999999999999999999999988754                    35788999998


Q ss_pred             EecCc-hHHHHHHhcCCCCeeEEEeeCceeEe-eC-CeEEEcCCCchhhhcCCCCChhhHHHHHHHHHHHhh----cccC
Q 020312           80 IIANG-ALVRVLIHTDVTKYLYFKAVDGSFVY-NK-GKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQD----YDEN  152 (328)
Q Consensus        80 ~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~-~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~  152 (328)
                      +.... .+.+.+.+.++......  ......+ .+ |..+.+...    +. . ........+..+...+..    ....
T Consensus        61 ~~~~~~~~~~~~~~~g~~~~~~~--~~~~~~~~~~~g~~~~~~~~----~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (453)
T 2yg5_A           61 VSPDQTALISLLDELGLKTFERY--REGESVYISSAGERTRYTGD----SF-P-TNETTKKEMDRLIDEMDDLAAQIGAE  132 (453)
T ss_dssp             BCTTCHHHHHHHHHTTCCEEECC--CCSEEEEECTTSCEEEECSS----SC-S-CCHHHHHHHHHHHHHHHHHHHHHCSS
T ss_pred             ecCccHHHHHHHHHcCCcccccc--cCCCEEEEeCCCceeeccCC----CC-C-CChhhHHHHHHHHHHHHHHHhhcCCC
Confidence            86554 34444545555432211  1222222 22 444433211    00 0 000011111111111111    1111


Q ss_pred             CCcccc-cccCCCCCHHHHHHhcCCChhHHHHHhhhhhcccCCCCC-CCchHHHHHHHHHHHHhhhccc--CCCeEEeec
Q 020312          153 DPKTHE-GMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYL-NEPALDTVKRMKLYAESIARFQ--GGSPYIYPL  228 (328)
Q Consensus       153 ~~~~~~-~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~--g~~~~~~~~  228 (328)
                      .+.... ....+..++.+|+++.+.++.++.++.+........+.. ..+....+..+... ..+....  ....+++++
T Consensus       133 ~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~  211 (453)
T 2yg5_A          133 EPWAHPLARDLDTVSFKQWLINQSDDAEARDNIGLFIAGGMLTKPAHSFSALQAVLMAASA-GSFSHLVDEDFILDKRVI  211 (453)
T ss_dssp             CGGGSTTHHHHHSSBHHHHHHHHCSCHHHHHHHHHHHCCCCCCSCTTSSBHHHHHHHHHHT-TCHHHHHCHHHHTCEEET
T ss_pred             CCCCCcchhhhhhccHHHHHHhhcCCHHHHHHHHHHHHhhcccCCcccccHHHHHHHhccC-CcHhhhccCCCcceEEEc
Confidence            000000 012356899999999988887777766544221111111 22332222211110 0000000  012357889


Q ss_pred             CCcCcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEecCceEEcCEEEECCCC
Q 020312          229 YGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSY  287 (328)
Q Consensus       229 gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~~g~~~~ad~vV~~~~~  287 (328)
                      ||++.++++|++.   .|++|++|++|++|..+ ++..+.|++++++++||+||++++.
T Consensus       212 gG~~~l~~~l~~~---lg~~i~~~~~V~~i~~~-~~~~v~v~~~~~~~~ad~VI~a~p~  266 (453)
T 2yg5_A          212 GGMQQVSIRMAEA---LGDDVFLNAPVRTVKWN-ESGATVLADGDIRVEASRVILAVPP  266 (453)
T ss_dssp             TCTHHHHHHHHHH---HGGGEECSCCEEEEEEE-TTEEEEEETTTEEEEEEEEEECSCG
T ss_pred             CChHHHHHHHHHh---cCCcEEcCCceEEEEEe-CCceEEEEECCeEEEcCEEEEcCCH
Confidence            9999999999754   47899999999999987 6552446678889999999988765

>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5

Probab=99.88  E-value=1.9e-21  Score=179.40  Aligned_cols=277  Identities=11%  Similarity=0.079  Sum_probs=160.2

Q ss_pred             CCCcccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCcccccchHHHHhhhcCCCCCCCccCCCCCeEEecCcceE
Q 020312            1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFI   80 (328)
Q Consensus         1 ~~~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~   80 (328)
                      |.+.+||+|||||++||+||++|+++|++|+|+|+++++||++.+.+.                    .++.+|.|++++
T Consensus        10 ~~~~~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~GG~~~~~~~--------------------~g~~~~~g~~~~   69 (504)
T 1sez_A           10 HSSAKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAGGKLRSVSQ--------------------DGLIWDEGANTM   69 (504)
T ss_dssp             ---CCEEEEECCSHHHHHHHHHHHTTSCEEEEECSSSSSCSSCCEEEE--------------------TTEEEESSCCCB
T ss_pred             cCCCCeEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCceeeecc--------------------CCeEEecCCccc
Confidence            445689999999999999999999999999999999999999999864                    468899999998


Q ss_pred             ecCch-HHHHHHhcCCCCeeEEEee-CceeEeeCCeEEEcCCCchhhhcCCCCChhhHHHHHHHHHHHhhcccCCCcccc
Q 020312           81 IANGA-LVRVLIHTDVTKYLYFKAV-DGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHE  158 (328)
Q Consensus        81 ~~~~~-~~~~~~~~~~~~~l~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (328)
                      ....+ +.+.+.+.++...+.+... ...+.+.+|..+.+|.+....+...+.....+  +..+......... ...  .
T Consensus        70 ~~~~~~~~~~~~~lgl~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-~~~--~  144 (504)
T 1sez_A           70 TESEGDVTFLIDSLGLREKQQFPLSQNKRYIARNGTPVLLPSNPIDLIKSNFLSTGSK--LQMLLEPILWKNK-KLS--Q  144 (504)
T ss_dssp             CCCSHHHHHHHHHTTCGGGEECCSSCCCEEEESSSSEEECCSSHHHHHHSSSSCHHHH--HHHHTHHHHC----------
T ss_pred             ccCcHHHHHHHHHcCCcccceeccCCCceEEEECCeEEECCCCHHHHhccccCCHHHH--HHHhHhhhccCcc-ccc--c
Confidence            76544 4445556676655444322 22345567888888754222233333333221  1111111110000 000  0


Q ss_pred             cccCCCCCHHHHHHhcCCChhH-HHHHhhhhh-cccCCCCCCCchHHHHHHHHHH-----------H-Hhhhccc-----
Q 020312          159 GMDLTRVTTRELIAKYGLDDNT-IDFIGHALA-LHRDDRYLNEPALDTVKRMKLY-----------A-ESIARFQ-----  219 (328)
Q Consensus       159 ~~~~~~~s~~~~~~~~~~~~~~-~~~~~~~~~-l~~~~~~~~~~~~~~l~~~~~~-----------~-~~~~~~~-----  219 (328)
                       ......|+.+|+++. +.+.. ..++.+... .+.. +....+....+..+...           . ..+....     
T Consensus       145 -~~~~~~s~~~~l~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  221 (504)
T 1sez_A          145 -VSDSHESVSGFFQRH-FGKEVVDYLIDPFVAGTCGG-DPDSLSMHHSFPELWNLEKRFGSVILGAIRSKLSPKNEKKQG  221 (504)
T ss_dssp             ----CCCBHHHHHHHH-HCHHHHHTTHHHHHHHHHSC-CGGGSBHHHHCHHHHHHHHHTSCHHHHHHHHTTC--------
T ss_pred             -cCCCCccHHHHHHHH-cCHHHHHHHHHHHHccccCC-ChHHhhHHHHhHHHHHHHHHhCCHHHHHHHhhhccccccccc
Confidence             012458999999876 44443 444444332 2221 11111221111111110           0 0011000     


Q ss_pred             ---------CCCeEEeecCCcCcHHHHHHHHHHHcC-cEEEcCcceeEEEecCCCc-----EEEEEe---cC---ceEEc
Q 020312          220 ---------GGSPYIYPLYGLGELPQAFARLSAVYG-GTYMLNKPECKVEFDEEGK-----VVGVTS---EG---ETAKC  278 (328)
Q Consensus       220 ---------g~~~~~~~~gG~~~l~~~l~~~~~~~G-~~i~~~~~V~~I~~~~~~~-----v~~v~~---~g---~~~~a  278 (328)
                               ....+++++||++.|+++|++   ..| ++|++|++|++|..+ +++     .+.|++   +|   ++++|
T Consensus       222 ~~~~~~~~~~~~~~~~~~GG~~~l~~~l~~---~l~~~~i~~~~~V~~I~~~-~~~~~~~~~~~v~~~~~~g~~~~~~~a  297 (504)
T 1sez_A          222 PPKTSANKKRQRGSFSFLGGMQTLTDAICK---DLREDELRLNSRVLELSCS-CTEDSAIDSWSIISASPHKRQSEEESF  297 (504)
T ss_dssp             --CCCSCCSTTCSCBEETTCTHHHHHHHHT---TSCTTTEETTCCEEEEEEE-CSSSSSSCEEEEEEBCSSSSCBCCCEE
T ss_pred             ccchhhccccCCceEeeCcHHHHHHHHHHh---hcccceEEcCCeEEEEEec-CCCCcccceEEEEEcCCCCccceeEEC
Confidence                     012367889999999999975   345 789999999999987 444     244443   34   57899


Q ss_pred             CEEEECCCC------Cc--------ch-hhh-hccceeEEeeeehhh
Q 020312          279 KKVVCDPSY------LP--------NK-VII-IMLIGFILIFLVRRI  309 (328)
Q Consensus       279 d~vV~~~~~------~~--------~~-~~~-~~~~~~~~~~~~~~~  309 (328)
                      |+||+++++      .+        +. +.. ...+..+++++++..
T Consensus       298 d~VI~a~p~~~l~~ll~~~~~~~~~~~~l~~~~~~~~~~v~l~~~~~  344 (504)
T 1sez_A          298 DAVIMTAPLCDVKSMKIAKRGNPFLLNFIPEVDYVPLSVVITTFKRE  344 (504)
T ss_dssp             SEEEECSCHHHHHTSEEESSSSBCCCTTSCCCCEEEEEEEEEEEEGG
T ss_pred             CEEEECCCHHHHHHHhhcccCCcccHHHHhcCCCCceEEEEEEEchh
Confidence            999998765      11        11 222 344667777777654

>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*

Probab=99.86  E-value=2.1e-20  Score=168.67  Aligned_cols=248  Identities=14%  Similarity=0.122  Sum_probs=141.3

Q ss_pred             CCcccEEEECCChhHHHHHHhhhhCC-CeEEEeccCCCCCCcccccchHHHHhhhcCCCCCCCccCCCCCeEEecCcceE
Q 020312            2 DEEYDVIVLGTGLKECILSGLLSVDG-LKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFI   80 (328)
Q Consensus         2 ~~~~dvvIvG~G~aGl~aA~~L~~~G-~~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~   80 (328)
                      ++++||+|||||++||+||++|+++| ++|+|+|+++++||++.|.+.                    .++.+|.|++++
T Consensus         4 ~~~~~v~IIGaG~aGl~aA~~L~~~g~~~v~v~E~~~~~GG~~~t~~~--------------------~G~~~d~G~~~~   63 (424)
T 2b9w_A            4 SKDSRIAIIGAGPAGLAAGMYLEQAGFHDYTILERTDHVGGKCHSPNY--------------------HGRRYEMGAIMG   63 (424)
T ss_dssp             CTTCCEEEECCSHHHHHHHHHHHHTTCCCEEEECSSSCSSTTCCCCEE--------------------TTEECCSSCCCB
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHhCCCCcEEEEECCCCCCCcccccCC--------------------CCcccccCceee
Confidence            46799999999999999999999999 999999999999999999864                    357889999888


Q ss_pred             ecCchHHH-HHHhcCCCCeeEEEeeCceeEeeCCeEEEcCCCchhhhcCCCCChhhHHHHHHHHHHHhh-cccCCC--cc
Q 020312           81 IANGALVR-VLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQD-YDENDP--KT  156 (328)
Q Consensus        81 ~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~  156 (328)
                      ....+.+. .+.+.+....  .......+.+.+|..+ .+..+......     +. ....++...... +.....  ..
T Consensus        64 ~~~~~~~~~l~~~~g~~~~--~~~~~~~~~~~~g~~~-~~~~~~~~~~~-----~~-~~~~~l~~~~~~~~~~~~~~~~~  134 (424)
T 2b9w_A           64 VPSYDTIQEIMDRTGDKVD--GPKLRREFLHEDGEIY-VPEKDPVRGPQ-----VM-AAVQKLGQLLATKYQGYDANGHY  134 (424)
T ss_dssp             CTTCHHHHHHHHHHCCCCC--SCCCCEEEECTTSCEE-CGGGCTTHHHH-----HH-HHHHHHHHHHHTTTTTTTSSSSS
T ss_pred             cCCcHHHHHHHHHhCCccc--cccccceeEcCCCCEe-ccccCcccchh-----HH-HHHHHHHHHHhhhhhhcccccch
Confidence            66544433 3334443211  0111112223344433 22111000000     00 112223222222 111100  00


Q ss_pred             cccccCCCCCHHHHHHhcCCChhHHHHHhhhhhcccCCCCCCCchHHHHHHHHHHHHhhhcccCCCeEEeecCCcCcHHH
Q 020312          157 HEGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQ  236 (328)
Q Consensus       157 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~gG~~~l~~  236 (328)
                      .........++.+|+++.+.+.....++.+.+.... ++....+....+..+.. ...+... . .+.+.+.+|++++++
T Consensus       135 ~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~~~~~~-~~~~~~~-~-~~~~~~~~g~~~l~~  210 (424)
T 2b9w_A          135 NKVHEDLMLPFDEFLALNGCEAARDLWINPFTAFGY-GHFDNVPAAYVLKYLDF-VTMMSFA-K-GDLWTWADGTQAMFE  210 (424)
T ss_dssp             SCCCGGGGSBHHHHHHHTTCGGGHHHHTTTTCCCCC-CCTTTSBHHHHHHHSCH-HHHHHHH-H-TCCBCCTTCHHHHHH
T ss_pred             hhhhhhhccCHHHHHHhhCcHHHHHHHHHHHHhhcc-CChHhcCHHHHHHhhhH-hhhhccc-C-CceEEeCChHHHHHH
Confidence            011122458999999998776533333334332111 12222333222221111 0111111 1 123466899999999


Q ss_pred             HHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEecCceEEcCEEEECCCC
Q 020312          237 AFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSY  287 (328)
Q Consensus       237 ~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~~g~~~~ad~vV~~~~~  287 (328)
                      ++.+.   .+.++++|++|++|..+ ++++. |++++++++||+||++++.
T Consensus       211 ~l~~~---l~~~v~~~~~V~~i~~~-~~~v~-v~~~~g~~~ad~Vv~a~~~  256 (424)
T 2b9w_A          211 HLNAT---LEHPAERNVDITRITRE-DGKVH-IHTTDWDRESDVLVLTVPL  256 (424)
T ss_dssp             HHHHH---SSSCCBCSCCEEEEECC-TTCEE-EEESSCEEEESEEEECSCH
T ss_pred             HHHHh---hcceEEcCCEEEEEEEE-CCEEE-EEECCCeEEcCEEEECCCH
Confidence            98644   46789999999999987 66655 6775456999999988765

>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*

Probab=99.85  E-value=4.5e-20  Score=166.91  Aligned_cols=248  Identities=17%  Similarity=0.102  Sum_probs=137.9

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCcccccchHHHHhhhcCCCCCCCccCCCCCeEEecCcceEecC-
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIAN-   83 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-   83 (328)
                      +||||||||++||+||++|+++|++|+|||+++++||++.+.+.+                 -.-++.+++|++++... 
T Consensus         2 ~dVvVIGaG~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~t~~~~-----------------cipg~~~~~g~~~~~~~~   64 (431)
T 3k7m_X            2 YDAIVVGGGFSGLKAARDLTNAGKKVLLLEGGERLGGRAYSRESR-----------------NVPGLRVEIGGAYLHRKH   64 (431)
T ss_dssp             EEEEEECCBHHHHHHHHHHHHTTCCEEEECSSSSSBTTCCEEECS-----------------SSTTCEEESSCCCBCTTT
T ss_pred             CCEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCccCeecceecc-----------------CCCCceEecCCeeeCCCC
Confidence            699999999999999999999999999999999999999887541                 00157788899888655 


Q ss_pred             ch-HHHHHHhcCCCCeeEEEeeCceeEe--eCCeEEEcCCCchhhhcCCCCChhhHHHHHHHHHHHhhcccCCCccc-cc
Q 020312           84 GA-LVRVLIHTDVTKYLYFKAVDGSFVY--NKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTH-EG  159 (328)
Q Consensus        84 ~~-~~~~~~~~~~~~~l~~~~~~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  159 (328)
                      .. +.+.+.+.++...  .........+  .++..............     .+. .....+.....++....+... ..
T Consensus        65 ~~~~~~~~~~~g~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~-~~~~~l~~~~~~~~~~~~~~~~~~  136 (431)
T 3k7m_X           65 HPRLAAELDRYGIPTA--AASEFTSFRHRLGPTAVDQAFPIPGSEAV-----AVE-AATYTLLRDAHRIDLEKGLENQDL  136 (431)
T ss_dssp             CHHHHHHHHHHTCCEE--ECCCCCEECCBSCTTCCSSSSCCCGGGHH-----HHH-HHHHHHHHHHTTCCTTTCTTSSSC
T ss_pred             cHHHHHHHHHhCCeee--ecCCCCcEEEEecCCeecCCCCCCHHHHH-----HHH-HHHHHHHHHHHhcCCCCCccCcch
Confidence            33 3344444444311  1111111111  12211110000000100     011 223334433333321111111 11


Q ss_pred             ccCCCCCHHHHHHhcCCChhHHHHHhhhhhcccCCCCCCCchHHHHHHHHHHHHhhhc-ccCCCeEEeecCCcCcHHHHH
Q 020312          160 MDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIAR-FQGGSPYIYPLYGLGELPQAF  238 (328)
Q Consensus       160 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~g~~~~~~~~gG~~~l~~~l  238 (328)
                      ...+ .++.+++++.+.++....++...............+....+..+......+.. ..... . .+.+|+..+++.+
T Consensus       137 ~~~d-~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~g~~~l~~~~  213 (431)
T 3k7m_X          137 EDLD-IPLNEYVDKLDLPPVSRQFLLAWAWNMLGQPADQASALWMLQLVAAHHYSILGVVLSLD-E-VFSNGSADLVDAM  213 (431)
T ss_dssp             GGGC-SBHHHHHHHHTCCHHHHHHHHHHHHHHHSSCTTTSBHHHHHHHHHHTTSCHHHHHHTCC-E-EETTCTHHHHHHH
T ss_pred             hhhc-CCHHHHHHhcCCCHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHhcCCccceeecchh-h-hcCCcHHHHHHHH
Confidence            1234 88999999888877766555433321112222222322222221111000000 00111 2 6688888888776


Q ss_pred             HHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe-cCceEEcCEEEECCC
Q 020312          239 ARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPS  286 (328)
Q Consensus       239 ~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~-~g~~~~ad~vV~~~~  286 (328)
                      +   ++.| +|++|++|++|..+ ++.+. |++ +|++++||+||++++
T Consensus       214 ~---~~~g-~i~~~~~V~~i~~~-~~~v~-v~~~~g~~~~ad~vi~a~~  256 (431)
T 3k7m_X          214 S---QEIP-EIRLQTVVTGIDQS-GDVVN-VTVKDGHAFQAHSVIVATP  256 (431)
T ss_dssp             H---TTCS-CEESSCCEEEEECS-SSSEE-EEETTSCCEEEEEEEECSC
T ss_pred             H---hhCC-ceEeCCEEEEEEEc-CCeEE-EEECCCCEEEeCEEEEecC
Confidence            4   4557 99999999999987 66654 666 677799999998887

>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A*

Probab=99.84  E-value=2.3e-19  Score=164.14  Aligned_cols=265  Identities=12%  Similarity=0.099  Sum_probs=153.1

Q ss_pred             CcccEEEECCChhHHHHHHhhhhCC-CeEEEeccCCCCCCccccc-chHHHHhhhcCCCCCCCccCCCCCeEEecCcceE
Q 020312            3 EEYDVIVLGTGLKECILSGLLSVDG-LKVLHMDRNDYYGGESSSL-NLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFI   80 (328)
Q Consensus         3 ~~~dvvIvG~G~aGl~aA~~L~~~G-~~V~vlE~~~~~GG~~~s~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~   80 (328)
                      ..+||+|||||++||+||++|+++| .+|+|+|+++++||++.+. ..                    .++.+|.|++++
T Consensus         8 ~~~~v~iiG~G~~Gl~~A~~l~~~g~~~v~v~E~~~~~GG~~~~~~~~--------------------~g~~~~~g~~~~   67 (484)
T 4dsg_A            8 LTPKIVIIGAGPTGLGAAVRLTELGYKNWHLYECNDTPGGLSRSFLDE--------------------NGFTWDLGGHVI   67 (484)
T ss_dssp             CSCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESSSSSSGGGCEEECT--------------------TSCEEESSCCCB
T ss_pred             cCCCEEEECcCHHHHHHHHHHHHcCCCCEEEEeCCCCCCCeeeeeecC--------------------CCcEEeeCCccc
Confidence            3589999999999999999999999 8999999999999999985 32                    468899999998


Q ss_pred             ecCchHHHHHHhcCCCCeeEEEeeCceeEeeCCeEEEcCCCchhhhcCCCCChhhH-HHHHHHHHHHhhcccCCCccccc
Q 020312           81 IANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEK-RRARKFFIYVQDYDENDPKTHEG  159 (328)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  159 (328)
                      ....+.+..+.+....+..  ......+.+.+|+.+.+|....  +.  ..+.-.+ ..+..++.......         
T Consensus        68 ~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~g~~~~~P~~~~--~~--~l~~~~~~~~~~~ll~~~~~~~---------  132 (484)
T 4dsg_A           68 FSHYQYFDDVMDWAVQGWN--VLQRESWVWVRGRWVPYPFQNN--IH--RLPEQDRKRCLDELVRSHARTY---------  132 (484)
T ss_dssp             CCSBHHHHHHHHHHCSCEE--EEECCCEEEETTEEEESSGGGC--GG--GSCHHHHHHHHHHHHHHHHCCC---------
T ss_pred             ccChHHHHHHHHHHhhhhh--hccCceEEEECCEEEEeCccch--hh--hCCHHHHHHHHHHHHHHHhccC---------
Confidence            7766555444433233332  2233456667899988883211  11  0111110 11122222211110         


Q ss_pred             ccCCCCCHHHHHHhcCCChhH-HHHHhhhh-hcccC--CC----CC--CCchHHHHHHHHHHHHhhhc--ccCCCeEEee
Q 020312          160 MDLTRVTTRELIAKYGLDDNT-IDFIGHAL-ALHRD--DR----YL--NEPALDTVKRMKLYAESIAR--FQGGSPYIYP  227 (328)
Q Consensus       160 ~~~~~~s~~~~~~~~~~~~~~-~~~~~~~~-~l~~~--~~----~~--~~~~~~~l~~~~~~~~~~~~--~~g~~~~~~~  227 (328)
                       ..+..++.+|+.+. +...+ ..++.+.. ..+..  ..    +.  ..+.......+.........  ......+.||
T Consensus       133 -~~~~~s~~e~~~~~-~g~~~~~~~~~p~~~~v~~~~~~~ls~~~~~~r~~~~~l~~~~~~~~~~~~~~~~~~~~~f~yp  210 (484)
T 4dsg_A          133 -TEPPNNFEESFTRQ-FGEGIADIFMRPYNFKVWAVPPCLMSTEWVEERVAPVDLERIRRNIQENRDDLGWGPNATFRFP  210 (484)
T ss_dssp             -SSCCSSHHHHHHHH-HHHHHCCCCCHHHHHHHHSSCGGGBCSSSCTTTSCCCCHHHHHHHHHHTCCCCCCSTTSEEEEE
T ss_pred             -CCCCCCHHHHHHHH-hHHHHHHHHHHHHHhhhcCCCHHHhcHHHHhccccCCCHHHHHHHHhhcccccCCCccceEEee
Confidence             11457899988765 33322 11222211 11110  00    00  01110111111111111000  0013346677


Q ss_pred             c-CCcCcHHHHHHHHHHHcCcEEEcC--cceeEEEecCCCcEEEEEecCceEEcCEEEECCCC-------------Ccch
Q 020312          228 L-YGLGELPQAFARLSAVYGGTYMLN--KPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSY-------------LPNK  291 (328)
Q Consensus       228 ~-gG~~~l~~~l~~~~~~~G~~i~~~--~~V~~I~~~~~~~v~~v~~~g~~~~ad~vV~~~~~-------------~~~~  291 (328)
                      . ||++.++++|++.+.+  .+|+++  ++|++|..+ ++.++  ..+|+++.||+||++++.             .|+.
T Consensus       211 ~~gG~~~l~~~la~~l~~--~~i~~~~~~~V~~I~~~-~~~v~--~~~G~~~~ad~VI~a~p~~~~~~ll~~~~~~~~~~  285 (484)
T 4dsg_A          211 QRGGTGIIYQAIKEKLPS--EKLTFNSGFQAIAIDAD-AKTIT--FSNGEVVSYDYLISTVPFDNLLRMTKGTGFKGYDE  285 (484)
T ss_dssp             SSSCTHHHHHHHHHHSCG--GGEEECGGGCEEEEETT-TTEEE--ETTSCEEECSEEEECSCHHHHHHHEECSSCTTGGG
T ss_pred             cCCCHHHHHHHHHhhhhh--CeEEECCCceeEEEEec-CCEEE--ECCCCEEECCEEEECCCHHHHHHHhhccCCCCCHH
Confidence            5 8999999999876543  279999  569999987 66432  247788999999988764             1222


Q ss_pred             hh----h-hccceeEEeeeehhh
Q 020312          292 VI----I-IMLIGFILIFLVRRI  309 (328)
Q Consensus       292 ~~----~-~~~~~~~~~~~~~~~  309 (328)
                      +.    . ...+..+++++++..
T Consensus       286 ~~~~l~~l~y~s~~~v~l~~~~~  308 (484)
T 4dsg_A          286 WPAIADKMVYSSTNVIGIGVKGT  308 (484)
T ss_dssp             HHHHHHHCCEEEEEEEEEEEESC
T ss_pred             HHHHHhCCCcCceEEEEEEEcCC
Confidence            21    2 456777888888765

>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A*

Probab=99.83  E-value=2.2e-20  Score=172.66  Aligned_cols=236  Identities=15%  Similarity=0.165  Sum_probs=124.5

Q ss_pred             CcccEEEECCChhHHHHHHhhhhCC-CeEEEeccCCCCCCcccccchHHHHhhhcCCCCCCCccCCCCCeEEecCcceEe
Q 020312            3 EEYDVIVLGTGLKECILSGLLSVDG-LKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFII   81 (328)
Q Consensus         3 ~~~dvvIvG~G~aGl~aA~~L~~~G-~~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~   81 (328)
                      .++||+|||||++||+||++|+++| ++|+|||+++++||++.|.+..                   .++.+|+|++++.
T Consensus         7 ~~~~VvIIGaG~aGL~AA~~L~~~G~~~V~VlEa~~riGGr~~t~~~~-------------------~G~~~D~G~~~~~   67 (516)
T 1rsg_A            7 AKKKVIIIGAGIAGLKAASTLHQNGIQDCLVLEARDRVGGRLQTVTGY-------------------QGRKYDIGASWHH   67 (516)
T ss_dssp             EEEEEEEECCBHHHHHHHHHHHHTTCCSEEEECSSSSSBTTCCEEECG-------------------GGCEEESSCCEEC
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhcCCCCEEEEeCCCCCCCceeeeecC-------------------CCcEEecCCeEEe
Confidence            3589999999999999999999999 9999999999999999987531                   2578999999987


Q ss_pred             cC--chHHHHHHhcCCCCeeEEEeeCceeEeeCCeEEEcCCCchhhhcCCCCChhhHHHHHHHHHHHhhcccCCCccccc
Q 020312           82 AN--GALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEG  159 (328)
Q Consensus        82 ~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (328)
                      ..  +++...+.+.++...      ...+.+.++..+.++.. ...........+. .....+..+........      
T Consensus        68 ~~~~~~~~~~~~~lg~~~~------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~------  133 (516)
T 1rsg_A           68 DTLTNPLFLEEAQLSLNDG------RTRFVFDDDNFIYIDEE-RGRVDHDKELLLE-IVDNEMSKFAELEFHQH------  133 (516)
T ss_dssp             CTTTCHHHHHHHHHHHHHC------CCCEECCCCCCEEEETT-TEECTTCTTTCHH-HHHHHHHHHHHHHC---------
T ss_pred             cCCCChHHHHHHHhCCCCc------ceeEEECCCCEEEEcCC-CccccccHHHHHH-HHHHHHHHHHHHHhhhc------
Confidence            53  445444433322100      00111122222212111 0011000000111 11112222221111100      


Q ss_pred             ccCCCCCHHHHHHhc------CCChhHHHHHhhhh---hcccCCCCCCCchHHHHHHHHHHHHhhhcccCCCeEEeecCC
Q 020312          160 MDLTRVTTRELIAKY------GLDDNTIDFIGHAL---ALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYG  230 (328)
Q Consensus       160 ~~~~~~s~~~~~~~~------~~~~~~~~~~~~~~---~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~gG  230 (328)
                      ...+..|+.++++++      .+.+....++...+   ..+........+....          +....+  ...++++ 
T Consensus       134 ~~~~d~s~~~~l~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~s~~~~----------~~~~~~--~~~~~~g-  200 (516)
T 1rsg_A          134 LGVSDCSFFQLVMKYLLQRRQFLTNDQIRYLPQLCRYLELWHGLDWKLLSAKDT----------YFGHQG--RNAFALN-  200 (516)
T ss_dssp             ----CCBHHHHHHHHHHHHGGGSCHHHHHHHHHHHGGGHHHHTBCTTTSBHHHH----------CCCCSS--CCEEESC-
T ss_pred             cCCCCCCHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHHhCCChHHCChHHH----------HhhccC--cchhhhC-
Confidence            012457788876543      12221111111111   1111111111111100          111112  2235566 


Q ss_pred             cCcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe-cCceEEcCEEEECCCC
Q 020312          231 LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSY  287 (328)
Q Consensus       231 ~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~-~g~~~~ad~vV~~~~~  287 (328)
                      ++.++++|++.+.  +++|++|++|++|..+ ++..+.|++ +|++++||+||+++++
T Consensus       201 ~~~l~~~l~~~l~--~~~i~~~~~V~~I~~~-~~~~v~v~~~~g~~~~ad~VI~t~p~  255 (516)
T 1rsg_A          201 YDSVVQRIAQSFP--QNWLKLSCEVKSITRE-PSKNVTVNCEDGTVYNADYVIITVPQ  255 (516)
T ss_dssp             HHHHHHHHHTTSC--GGGEETTCCEEEEEEC-TTSCEEEEETTSCEEEEEEEEECCCH
T ss_pred             HHHHHHHHHHhCC--CCEEEECCEEEEEEEc-CCCeEEEEECCCcEEECCEEEECCCH
Confidence            7788888765443  3679999999999986 444456777 7778999999998764

>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A*

Probab=99.83  E-value=1.1e-19  Score=167.08  Aligned_cols=288  Identities=13%  Similarity=0.044  Sum_probs=148.4

Q ss_pred             CCcccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCcccccchHHHHhhhcCCCCCCCccCCCCCeEEecCcceEe
Q 020312            2 DEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFII   81 (328)
Q Consensus         2 ~~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~   81 (328)
                      ++++||+|||||++||+||++|+++|++|+|||+++++||++.+.+.+.   .+..-...........++.++.|++++.
T Consensus         9 ~~~~~v~IIGaG~aGl~aA~~L~~~g~~v~v~E~~~~~GG~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~g~~~~~   85 (489)
T 2jae_A            9 KGSHSVVVLGGGPAGLCSAFELQKAGYKVTVLEARTRPGGRVWTARGGS---EETDLSGETQKCTFSEGHFYNVGATRIP   85 (489)
T ss_dssp             CSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTCCEEETTC---EEECTTSCEEECCCCTTCEEESSCCCEE
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEeccCCCCCceeeeccCc---ccccccchhhhhcccCCCcCCcchhhcc
Confidence            4578999999999999999999999999999999999999998876420   0000000000000114567888888887


Q ss_pred             cCchHHHHHHhcCCCCeeEEEee-CceeEe-eC-----CeEEEcCCCchhhhcCCCCChhhHHHHHHHHHHHhhcccCCC
Q 020312           82 ANGALVRVLIHTDVTKYLYFKAV-DGSFVY-NK-----GKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDP  154 (328)
Q Consensus        82 ~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~-~~-----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (328)
                      ....+.+.+.+.++... .+... ...+.+ .+     |..+..+.. ...+       +.  .+..+............
T Consensus        86 ~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~-------~~--~~~~l~~~~~~~~~~~~  154 (489)
T 2jae_A           86 QSHITLDYCRELGVEIQ-GFGNQNANTFVNYQSDTSLSGQSVTYRAA-KADT-------FG--YMSELLKKATDQGALDQ  154 (489)
T ss_dssp             TTSTHHHHHHHHTCCEE-EECCCCTTSEEECCCSSTTTTCCEEHHHH-HHHH-------HH--HHHHHHHHHHHHTTTTT
T ss_pred             cHHHHHHHHHHcCCceE-EccccCCCceEEecCCcccCCccccHHHH-hhhh-------hc--cHHHHHHHHHhcccccc
Confidence            66555555556665422 11111 122333 33     333332210 0000       00  01111111111000000


Q ss_pred             cccccccCCCCCHHHHHHhcCCC-------hhH-HHHHhhhhhcccCCCCCCC-chHHHHHH-HHHHHHhhhcccCCCeE
Q 020312          155 KTHEGMDLTRVTTRELIAKYGLD-------DNT-IDFIGHALALHRDDRYLNE-PALDTVKR-MKLYAESIARFQGGSPY  224 (328)
Q Consensus       155 ~~~~~~~~~~~s~~~~~~~~~~~-------~~~-~~~~~~~~~l~~~~~~~~~-~~~~~l~~-~~~~~~~~~~~~g~~~~  224 (328)
                      ..   ...+..++.+|+++++-.       ... ..++............... .+...... +..+............+
T Consensus       155 ~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (489)
T 2jae_A          155 VL---SREDKDALSEFLSDFGDLSDDGRYLGSSRRGYDSEPGAGLNFGTEKKPFAMQEVIRSGIGRNFSFDFGYDQAMMM  231 (489)
T ss_dssp             TS---CHHHHHHHHHHHHHHTTCCTTSCCCCCGGGCEEECCCBTTCCCEECCCCCHHHHHHHTTTTTGGGGGCTTTSSSE
T ss_pred             cc---chhhHHHHHHHHHHhhhhhhccccccccchhhccCCCcccccCCCCCCcCHHHHhhhhHHHHHhhhhccccCccE
Confidence            00   001234677777753210       000 0000000000000000000 11111000 00011100011123567


Q ss_pred             EeecCCcCcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe-cC---ceEEcCEEEECCCC---------Ccch
Q 020312          225 IYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EG---ETAKCKKVVCDPSY---------LPNK  291 (328)
Q Consensus       225 ~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~-~g---~~~~ad~vV~~~~~---------~~~~  291 (328)
                      ++++||++.|+++|++.+.+  ++|++|++|++|..+ ++++. |++ ++   ++++||+||+++++         +|+.
T Consensus       232 ~~~~gG~~~l~~~l~~~l~~--~~i~~~~~V~~i~~~-~~~v~-v~~~~g~~~~~~~ad~vI~a~p~~~l~~l~~~l~~~  307 (489)
T 2jae_A          232 FTPVGGMDRIYYAFQDRIGT--DNIVFGAEVTSMKNV-SEGVT-VEYTAGGSKKSITADYAICTIPPHLVGRLQNNLPGD  307 (489)
T ss_dssp             EEETTCTTHHHHHHHHHHCG--GGEETTCEEEEEEEE-TTEEE-EEEEETTEEEEEEESEEEECSCHHHHTTSEECCCHH
T ss_pred             EeecCCHHHHHHHHHHhcCC--CeEEECCEEEEEEEc-CCeEE-EEEecCCeEEEEECCEEEECCCHHHHHhCccCCCHH
Confidence            88999999999999876532  789999999999988 66655 544 55   57999999998765         2222


Q ss_pred             h----hh-hccceeEEeeeehhhh
Q 020312          292 V----II-IMLIGFILIFLVRRIL  310 (328)
Q Consensus       292 ~----~~-~~~~~~~~~~~~~~~~  310 (328)
                      .    .+ ...+.++++++++...
T Consensus       308 ~~~~l~~~~~~~~~kv~l~~~~~~  331 (489)
T 2jae_A          308 VLTALKAAKPSSSGKLGIEYSRRW  331 (489)
T ss_dssp             HHHHHHTEECCCEEEEEEEESSCH
T ss_pred             HHHHHHhCCCccceEEEEEeCCCC
Confidence            1    12 4557789999988753

>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*

Probab=99.82  E-value=1e-18  Score=160.95  Aligned_cols=268  Identities=18%  Similarity=0.197  Sum_probs=150.4

Q ss_pred             CcccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCcccccchHHHHhhhcCCCCCCCccCCCCCeEEecCcceEec
Q 020312            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIA   82 (328)
Q Consensus         3 ~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~   82 (328)
                      ..+||+|||||++||+||+.|+++|++|+|||+++++||++.+....                  ..++.+|.|++++..
T Consensus        32 ~~~~v~IiGaG~~Gl~aA~~l~~~g~~v~vlE~~~~~gg~~~~~~~~------------------~~~~~~~~g~~~~~~   93 (498)
T 2iid_A           32 NPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPGGRVRTYRNE------------------EAGWYANLGPMRLPE   93 (498)
T ss_dssp             SCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSSSSBTTCCEEEET------------------TTTEEEESSCCCEET
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCCCeEEEEECCCCCCCceeeeccC------------------CCCchhhcCcccccc
Confidence            36899999999999999999999999999999999999999887521                  146888999999877


Q ss_pred             CchHHHHHH-hcCCCCeeEEEe-eCceeEeeCCeEEEcCC--CchhhhcCCCC------C---hhhHHHHHHHHHHHhhc
Q 020312           83 NGALVRVLI-HTDVTKYLYFKA-VDGSFVYNKGKVHKVPA--TDMEALKSPLM------G---IFEKRRARKFFIYVQDY  149 (328)
Q Consensus        83 ~~~~~~~~~-~~~~~~~l~~~~-~~~~~~~~~g~~~~~~~--~~~~~~~~~~~------~---~~~~~~~~~~~~~~~~~  149 (328)
                      ....+..+. +.++... .+.. ....+...+|.....+.  .....+...+.      .   ++. ....++...+...
T Consensus        94 ~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  171 (498)
T 2iid_A           94 KHRIVREYIRKFDLRLN-EFSQENDNAWYFIKNIRKKVGEVKKDPGLLKYPVKPSEAGKSAGQLYE-ESLGKVVEELKRT  171 (498)
T ss_dssp             TCHHHHHHHHHTTCCEE-EECSCCTTSEEEETTEEEEHHHHHHCGGGGCCCCCGGGTTCCHHHHHH-HHTHHHHHHHHHS
T ss_pred             hHHHHHHHHHHhCCCce-eecccCCccEEEeCCeeecccccccCccccccCCCccccCCCHHHHHH-HHHHHHHHHHhhc
Confidence            655555444 4444311 1211 12223333443322110  00011111100      0   000 0111111111111


Q ss_pred             ccCCCcccccccCCCCCHHHHHHhcC-CChhHHHHHhhhhhcccCCCCCCCchHHHHHHHHHHHHhhhcccCCCeEEeec
Q 020312          150 DENDPKTHEGMDLTRVTTRELIAKYG-LDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPL  228 (328)
Q Consensus       150 ~~~~~~~~~~~~~~~~s~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~  228 (328)
                      ..  ..  ....++..++.+|+++.+ ++......+...+..   ...........+....    .+   .....+++++
T Consensus       172 ~~--~~--~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~----~~---~~~~~~~~~~  237 (498)
T 2iid_A          172 NC--SY--ILNKYDTYSTKEYLIKEGDLSPGAVDMIGDLLNE---DSGYYVSFIESLKHDD----IF---AYEKRFDEIV  237 (498)
T ss_dssp             CH--HH--HHHHHTTSBHHHHHHHTSCCCHHHHHHHHHHTTC---GGGTTSBHHHHHHHHH----HH---TTCCCEEEET
T ss_pred             cH--HH--HHHHhhhhhHHHHHHHccCCCHHHHHHHHHhcCc---ccchhHHHHHHHHHHh----cc---ccCcceEEeC
Confidence            00  00  001125578999998875 555544443322210   0000111111111110    11   1234577889


Q ss_pred             CCcCcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe-cCc----eEEcCEEEECCCC-----------Ccchh
Q 020312          229 YGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGE----TAKCKKVVCDPSY-----------LPNKV  292 (328)
Q Consensus       229 gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~-~g~----~~~ad~vV~~~~~-----------~~~~~  292 (328)
                      ||++.++++|++.+..   +|++|++|++|..+ ++.+ .|++ +++    +++||+||+++++           +|+..
T Consensus       238 gG~~~l~~~l~~~l~~---~i~~~~~V~~I~~~-~~~v-~v~~~~~~~~~~~~~ad~vI~t~p~~~~~~i~f~p~Lp~~~  312 (498)
T 2iid_A          238 DGMDKLPTAMYRDIQD---KVHFNAQVIKIQQN-DQKV-TVVYETLSKETPSVTADYVIVCTTSRAVRLIKFNPPLLPKK  312 (498)
T ss_dssp             TCTTHHHHHHHHHTGG---GEESSCEEEEEEEC-SSCE-EEEEECSSSCCCEEEESEEEECSCHHHHTTSEEESCCCHHH
T ss_pred             CcHHHHHHHHHHhccc---ccccCCEEEEEEEC-CCeE-EEEEecCCcccceEEeCEEEECCChHHHhheecCCCCCHHH
Confidence            9999999999876543   89999999999988 6664 4444 443    4899999998765           12221


Q ss_pred             ----hh-hccceeEEeeeehhh
Q 020312          293 ----II-IMLIGFILIFLVRRI  309 (328)
Q Consensus       293 ----~~-~~~~~~~~~~~~~~~  309 (328)
                          ++ ...+..+++++++..
T Consensus       313 ~~ai~~l~~~~~~kv~l~~~~~  334 (498)
T 2iid_A          313 AHALRSVHYRSGTKIFLTCTTK  334 (498)
T ss_dssp             HHHHHHCCEECEEEEEEEESSC
T ss_pred             HHHHHhCCCcceeEEEEEeCCC
Confidence                12 344566888888765

>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A*

Probab=99.80  E-value=8.5e-20  Score=161.39  Aligned_cols=250  Identities=14%  Similarity=0.134  Sum_probs=143.1

Q ss_pred             CcccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCcccccchHHHHhhhcCCCCCCCccCCCCCeEE-ecCcceEe
Q 020312            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNV-DMIPKFII   81 (328)
Q Consensus         3 ~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~   81 (328)
                      ..+||+|||||++||+||++|+++|++|+|+|+++++||++.+....                   .++.+ +.|++++.
T Consensus        28 ~~~dv~IIGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG~~~~~~~~-------------------~G~~~~~~G~~~~~   88 (397)
T 3hdq_A           28 KGFDYLIVGAGFAGSVLAERLASSGQRVLIVDRRPHIGGNAYDCYDD-------------------AGVLIHPYGPHIFH   88 (397)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSSGGGCCEECT-------------------TSCEECTTSCCCCE
T ss_pred             CCCCEEEECccHHHHHHHHHHHHCCCceEEEeccCCCCCccceeecc-------------------CCceEeecCCcccC
Confidence            46899999999999999999999999999999999999999887511                   34554 88999988


Q ss_pred             cCchHHHHHHh-cCCCCeeEEEeeCceeEeeCCeEEEcCCCchhhhcCCCCCh-hhHHHHHHHHHHHhhcccCCCccccc
Q 020312           82 ANGALVRVLIH-TDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGI-FEKRRARKFFIYVQDYDENDPKTHEG  159 (328)
Q Consensus        82 ~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (328)
                      ...+.+..+.+ .+.  .  .......+.+.+|+.+++|.+ ...+.. ++++ ........++.   +...  +     
T Consensus        89 ~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~g~l~~lP~~-~~~~~~-l~~~~~~~~~~~~~l~---~~~~--~-----  152 (397)
T 3hdq_A           89 TNSKDVFEYLSRFTE--W--RPYQHRVLASVDGQLLPIPIN-LDTVNR-LYGLNLTSFQVEEFFA---SVAE--K-----  152 (397)
T ss_dssp             ESCHHHHHHHHTSCC--E--EECCCBEEEEETTEEEEESCC-HHHHHH-HHTCCCCHHHHHHHHH---HHCC--C-----
T ss_pred             CChHHHHHHHHHhhh--c--ccccccceEEECCEEEEcCCC-hHHHHH-hhccCCCHHHHHHHHh---hccc--C-----
Confidence            66554444443 331  1  112234456679999999865 322211 1110 11122333332   1110  0     


Q ss_pred             ccCCCCCHHHHHHhcCCChhH-HHHHhhhh-hcccCCCCCCCchHHHHHHHHHHHHhhhcccCCCeE-EeecCCcCcHHH
Q 020312          160 MDLTRVTTRELIAKYGLDDNT-IDFIGHAL-ALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPY-IYPLYGLGELPQ  236 (328)
Q Consensus       160 ~~~~~~s~~~~~~~~~~~~~~-~~~~~~~~-~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~-~~~~gG~~~l~~  236 (328)
                       ..+..++.+|+.+. +...+ ..++.+.. ..|..+ ....+.. .+.++......-..+ ....+ .+|++|..++++
T Consensus       153 -~~~~~s~~e~~~~~-~G~~~~e~~~~py~~k~~~~~-~~~Lsa~-~~~Rvp~~~~~d~~y-f~~~~qg~P~gGy~~l~e  227 (397)
T 3hdq_A          153 -VEQVRTSEDVVVSK-VGRDLYNKFFRGYTRKQWGLD-PSELDAS-VTARVPTRTNRDNRY-FADTYQAMPLHGYTRMFQ  227 (397)
T ss_dssp             -CSSCCBHHHHHHHH-HHHHHHHHHTHHHHHHHHSSC-GGGSBTT-TGGGSCCCSSCCCBS-CCCSEEEEETTCHHHHHH
T ss_pred             -CCCCcCHHHHHHHh-cCHHHHHHHHHHHhCchhCCC-HHHHHHH-HHHhcCcccccCccc-hhhhheeccCCCHHHHHH
Confidence             12567899998665 33333 44555543 333211 1111110 011110000000000 02233 479999999998


Q ss_pred             HHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEecCceEEcCEEEECCCC---Ccchhhh-hccceeEEeeeehhh
Q 020312          237 AFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSY---LPNKVII-IMLIGFILIFLVRRI  309 (328)
Q Consensus       237 ~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~~g~~~~ad~vV~~~~~---~~~~~~~-~~~~~~~~~~~~~~~  309 (328)
                      +|+   +..|++|++|++|+++              +..+.||+||+|+++   ......+ ...|..+++++++..
T Consensus       228 ~l~---~~~g~~V~l~~~v~~~--------------~~~~~~d~vI~T~P~d~~~~~~~g~L~yrsl~~~~~~~~~~  287 (397)
T 3hdq_A          228 NML---SSPNIKVMLNTDYREI--------------ADFIPFQHMIYTGPVDAFFDFCYGKLPYRSLEFRHETHDTE  287 (397)
T ss_dssp             HHT---CSTTEEEEESCCGGGT--------------TTTSCEEEEEECSCHHHHTTTTTCCCCEEEEEEEEEEESSS
T ss_pred             HHH---hccCCEEEECCeEEec--------------cccccCCEEEEcCCHHHHHHHhcCCCCCceEEEEEEEeccc
Confidence            885   4569999999999843              234678999988753   1111222 345555666666543

>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}

Probab=99.79  E-value=7.4e-18  Score=147.79  Aligned_cols=243  Identities=12%  Similarity=0.170  Sum_probs=134.4

Q ss_pred             CCcccEEEECCChhHHHHHHhhhhCCCeEEEeccC-CCCCCcccccchHHHHhhhcCCCCCCCccCCCCCeEEecCcceE
Q 020312            2 DEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRN-DYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFI   80 (328)
Q Consensus         2 ~~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~-~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~   80 (328)
                      +..+||+|||||++||+||++|+++|++|+|||++ +++||++.+.....   +      .+... ...++.++.|++++
T Consensus        42 ~~~~~V~IIGAGiaGL~aA~~L~~~G~~V~VlE~~~~~vGGr~~t~~~~~---~------~~~~~-~~~~~~~e~G~~~~  111 (376)
T 2e1m_A           42 GPPKRILIVGAGIAGLVAGDLLTRAGHDVTILEANANRVGGRIKTFHAKK---G------EPSPF-ADPAQYAEAGAMRL  111 (376)
T ss_dssp             CSCCEEEEECCBHHHHHHHHHHHHTSCEEEEECSCSSCCBTTCCEECCCT---T------SCCSS-SSTTCCEESSCCCE
T ss_pred             CCCceEEEECCCHHHHHHHHHHHHCCCcEEEEeccccccCCceeeecccc---c------ccccc-cCCCcEEecCceee
Confidence            34689999999999999999999999999999999 99999999875310   0      00000 02457889999998


Q ss_pred             ecCchHHHHH-HhcCCCCeeEEEee-----------------------------------------CceeEeeCCeEEEc
Q 020312           81 IANGALVRVL-IHTDVTKYLYFKAV-----------------------------------------DGSFVYNKGKVHKV  118 (328)
Q Consensus        81 ~~~~~~~~~~-~~~~~~~~l~~~~~-----------------------------------------~~~~~~~~g~~~~~  118 (328)
                      ....+.+..+ .+.++.........                                         ...+.+.+|.....
T Consensus       112 ~~~~~~~~~~~~~lGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~q~~r~~~~~~~~~~~g~~~~~  191 (376)
T 2e1m_A          112 PSFHPLTLALIDKLGLKRRLFFNVDIDPQTGNQDAPVPPVFYKSFKDGKTWTNGAPSPEFKEPDKRNHTWIRTNREQVRR  191 (376)
T ss_dssp             ETTCHHHHHHHHHTTCCEEEECSSCCCTTSSBCSSCCCCCEEECSSTTCEEESSCCCTTCBCCCCCCCSEEEETTEEEEH
T ss_pred             cchHHHHHHHHHHcCCCcceeeccccccccccccccccccceeeeccceeEeccCCcccccccccCCCceEEECCceecc
Confidence            7766544433 34555443322211                                         11122233333221


Q ss_pred             CC--Cchhhhc-----------CCCCChhhHHHHHHHHHHHhhcccC-------CC---ccccc--ccCCCCCHHHHHH-
Q 020312          119 PA--TDMEALK-----------SPLMGIFEKRRARKFFIYVQDYDEN-------DP---KTHEG--MDLTRVTTRELIA-  172 (328)
Q Consensus       119 ~~--~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~-------~~---~~~~~--~~~~~~s~~~~~~-  172 (328)
                      ..  ..+..+.           ..+..++ ...+.++...+......       .+   ..+..  ..++..|+.+|++ 
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lD~~S~~~~L~~  270 (376)
T 2e1m_A          192 AQYATDPSSINEGFHLTGCETRLTVSDMV-NQALEPVRDYYSVKQDDGTRVNKPFKEWLAGWADVVRDFDGYSMGRFLRE  270 (376)
T ss_dssp             HHHHHCTHHHHHHTTCCGGGGGSCHHHHH-HHHHHHHHHHHEEEETTTEEEECCHHHHHHHHHHHHHHHTTCBHHHHHHH
T ss_pred             cccccCHHHhccccCCchhhcccCHHHHH-HHHHHHHHHhhhhccccccccccccchhhccchHHHHHHhCCCHHHHHhh
Confidence            00  0000000           0000001 11223333322210000       00   00111  1357899999998 


Q ss_pred             hcCCChhHHHHHhhhhhcccCCCCCCCchHHHHHHHHHHHHhhhcccCCCeEEeecCCcCcHHHHHHHHHHHcCcEEEcC
Q 020312          173 KYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLN  252 (328)
Q Consensus       173 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~gG~~~l~~~l~~~~~~~G~~i~~~  252 (328)
                      +.++++...+++.....   .......+....+      .... .+.+...++.+.||+++|+++|++.+   +.+|++|
T Consensus       271 ~~g~s~~~~~~~~~~~~---~~~~~~~s~l~~l------~~~~-~~~~~~~~~~i~GG~~~l~~~l~~~l---~~~i~l~  337 (376)
T 2e1m_A          271 YAEFSDEAVEAIGTIEN---MTSRLHLAFFHSF------LGRS-DIDPRATYWEIEGGSRMLPETLAKDL---RDQIVMG  337 (376)
T ss_dssp             TSCCCHHHHHHHHHHTT---CTTTTTSBHHHHH------HHCS-CSCTTCCEEEETTCTTHHHHHHHHHG---GGTEECS
T ss_pred             ccCCCHHHHHHHHhhcC---ccccchhhHHHHH------HHhh-hhccCCceEEECCcHHHHHHHHHHhc---CCcEEec
Confidence            78899988766543321   1111122222221      1111 11235668899999999999998654   5789999


Q ss_pred             cceeEEEecCCCcEEEE
Q 020312          253 KPECKVEFDEEGKVVGV  269 (328)
Q Consensus       253 ~~V~~I~~~~~~~v~~v  269 (328)
                      ++|++|.++ ++.+..+
T Consensus       338 ~~V~~I~~~-~~gv~v~  353 (376)
T 2e1m_A          338 QRMVRLEYY-DPGRDGH  353 (376)
T ss_dssp             EEEEEEEEC-CCC----
T ss_pred             CeEEEEEEC-CCceEEE
Confidence            999999998 4444433

>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis}

Probab=99.78  E-value=2.4e-20  Score=166.64  Aligned_cols=235  Identities=16%  Similarity=0.177  Sum_probs=132.4

Q ss_pred             CCCcccEEEECCChhHHHHHHhhhhC-CCeEEEeccCCCCCCcccccchHHHHhhhcCCCCCCCccCCCCCeEE-ecCcc
Q 020312            1 MDEEYDVIVLGTGLKECILSGLLSVD-GLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNV-DMIPK   78 (328)
Q Consensus         1 ~~~~~dvvIvG~G~aGl~aA~~L~~~-G~~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~   78 (328)
                      |++++||+|||||++||+||++|+++ |++|+|+|+++++||++.+....                  ..++.+ +.|++
T Consensus         4 m~~~~~v~IiGaG~~Gl~aA~~L~~~~g~~v~v~E~~~~~GG~~~~~~~~------------------~~g~~~~~~G~~   65 (399)
T 1v0j_A            4 MTARFDLFVVGSGFFGLTIAERVATQLDKRVLVLERRPHIGGNAYSEAEP------------------QTGIEVHKYGAH   65 (399)
T ss_dssp             CCCSCSEEEECCSHHHHHHHHHHHHHSCCCEEEECSSSSSSGGGCEEECT------------------TTCCEEETTSCC
T ss_pred             ccccCCEEEECCCHHHHHHHHHHHHhCCCCEEEEeCCCCCCCeeeecccc------------------CCCEEEEeCCCc
Confidence            44579999999999999999999999 99999999999999999998531                  024666 48999


Q ss_pred             eEecCchHHHHHH-hcCCCCeeEEEeeCceeEeeCCeEEEcCCCchhhhcCCCCCh-hhHHHHHHHHH-HHhhcccCCCc
Q 020312           79 FIIANGALVRVLI-HTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGI-FEKRRARKFFI-YVQDYDENDPK  155 (328)
Q Consensus        79 ~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~  155 (328)
                      ++....+.+..+. +.+....    .....+.+.+|+.+.+|.. ...+.. +... +.+..+..++. ......     
T Consensus        66 ~~~~~~~~~~~~~~~~g~~~~----~~~~~~~~~~G~~~~~p~~-~~~~~~-l~~~~~~~~~~~~~l~~~~~~~~-----  134 (399)
T 1v0j_A           66 LFHTSNKRVWDYVRQFTDFTD----YRHRVFAMHNGQAYQFPMG-LGLVSQ-FFGKYFTPEQARQLIAEQAAEID-----  134 (399)
T ss_dssp             CEEESCHHHHHHHTTTCCBCC----CCCCEEEEETTEEEEESSS-HHHHHH-HHTSCCCHHHHHHHHHHHGGGSC-----
T ss_pred             EEcCCcHHHHHHHHHhhhhhc----cccceEEEECCEEEeCCCC-HHHHHH-HhcccCCHHHHHHHHHHHhhccC-----
Confidence            8876554433333 3343111    1223445568888888854 222211 0000 01112222221 111110     


Q ss_pred             ccccccCCCCCHHHHHHhcCCChhH-HHHHhhhh-hcccCCCCCCCchHHHHHHHHHHHHhhhcccCCCeE-EeecCCcC
Q 020312          156 THEGMDLTRVTTRELIAKYGLDDNT-IDFIGHAL-ALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPY-IYPLYGLG  232 (328)
Q Consensus       156 ~~~~~~~~~~s~~~~~~~~~~~~~~-~~~~~~~~-~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~-~~~~gG~~  232 (328)
                           ..+..++.+|+.+. +.+.+ ..++.+.. ..+..+. ...+.... .++.........+ ....+ .+|+||++
T Consensus       135 -----~~~~~s~~e~l~~~-~g~~~~~~~~~~~~~~~~~~~~-~~ls~~~~-~~~~~~~~~~~~~-~~~~~~~~p~gG~~  205 (399)
T 1v0j_A          135 -----TADAQNLEEKAISL-IGRPLYEAFVKGYTAKQWQTDP-KELPAANI-TRLPVRYTFDNRY-FSDTYEGLPTDGYT  205 (399)
T ss_dssp             -----TTC----CCHHHHH-HCHHHHHHHTHHHHHHHHTSCG-GGSCGGGC-SCCCCCSSSCCCS-CCCSEEECBTTHHH
T ss_pred             -----CCCcccHHHHHHHH-HhHHHHHHHHHHHHHhhcCCCh-hhcChHhh-hcceeEeccccch-hhhhhcccccccHH
Confidence                 11456788888764 44444 44444433 2332111 11111100 0000000000000 12234 38999999


Q ss_pred             cHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEecCceE-EcCEEEECCCC
Q 020312          233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETA-KCKKVVCDPSY  287 (328)
Q Consensus       233 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~~g~~~-~ad~vV~~~~~  287 (328)
                      +++++|++   +.|++|++|++|++|..+       |    +.+ +||+||++++.
T Consensus       206 ~l~~~l~~---~~g~~I~l~~~V~~I~~~-------v----~~~~~aD~VI~t~p~  247 (399)
T 1v0j_A          206 AWLQNMAA---DHRIEVRLNTDWFDVRGQ-------L----RPGSPAAPVVYTGPL  247 (399)
T ss_dssp             HHHHHHTC---STTEEEECSCCHHHHHHH-------H----TTTSTTCCEEECSCH
T ss_pred             HHHHHHHh---cCCeEEEECCchhhhhhh-------h----hhcccCCEEEECCcH
Confidence            99999864   568999999999999632       1    145 79999998764

>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7

Probab=99.77  E-value=2.1e-19  Score=158.77  Aligned_cols=249  Identities=13%  Similarity=0.096  Sum_probs=139.9

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCcccccchHHHHhhhcCCCCCCCccCCCCCeEEe-cCcceEec
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVD-MIPKFIIA   82 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~   82 (328)
                      ++||+|||||++||+||++|+++|++|+|+|+++++||++.+...                    .++.++ .|++++..
T Consensus         1 ~~~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~~~GG~~~~~~~--------------------~g~~~~~~G~~~~~~   60 (367)
T 1i8t_A            1 MYDYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIGGNAYTEDC--------------------EGIQIHKYGAHIFHT   60 (367)
T ss_dssp             CEEEEEECCSHHHHHHHHHHGGGTCCEEEECSSSSSSGGGCEEEE--------------------TTEEEETTSCCCEEE
T ss_pred             CCCEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCcceEeecc--------------------CCceeeccCCceecC
Confidence            379999999999999999999999999999999999999988753                    356774 89999887


Q ss_pred             CchHHHHHH-hcCCCCeeEEEeeCceeEeeCCeEEEcCCCchhhhcCCCCChhhHHHHHHHHHHHhhcccCCCccccccc
Q 020312           83 NGALVRVLI-HTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMD  161 (328)
Q Consensus        83 ~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (328)
                      ..+.+-.+. +.+.  ..  ........+.+|+.+.+|.+ ...+..-+.. ..+..+..+........   .      .
T Consensus        61 ~~~~~~~~~~~l~~--~~--~~~~~~~~~~~g~~~~~p~~-~~~~~~l~~~-~~~~~~~~~l~~~~~~~---~------~  125 (367)
T 1i8t_A           61 NDKYIWDYVNDLVE--FN--RFTNSPLAIYKDKLFNLPFN-MNTFHQMWGV-KDPQEAQNIINAQKKKY---G------D  125 (367)
T ss_dssp             SCHHHHHHHHTTSC--BC--CCCCCCEEEETTEEEESSBS-HHHHHHHHCC-CCHHHHHHHHHHHTTTT---C------C
T ss_pred             CCHHHHHHHHHhhh--hh--hccccceEEECCeEEEcCCC-HHHHHHHhcc-CCHHHHHHHHHHHhhcc---C------C
Confidence            654333333 2222  11  11122234457888888754 2222210000 01223333333222110   0      1


Q ss_pred             CCCCCHHHHHHhcCCChhH-HHHHhhhh-hcccCCCCCCCchHHHHHHHHHHHHhhhcccCCCeE-EeecCCcCcHHHHH
Q 020312          162 LTRVTTRELIAKYGLDDNT-IDFIGHAL-ALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPY-IYPLYGLGELPQAF  238 (328)
Q Consensus       162 ~~~~s~~~~~~~~~~~~~~-~~~~~~~~-~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~-~~~~gG~~~l~~~l  238 (328)
                      .+..++.+|+.+. +.+.+ ..++.+.. ..+..+. ...+.... .++......-..+ ....| .+|+||+++++++|
T Consensus       126 ~~~~s~~~~~~~~-~g~~~~~~~~~p~~~~~~~~~~-~~lsa~~~-~~l~~~~~~~~~~-~~~~~~~~p~gG~~~l~~~l  201 (367)
T 1i8t_A          126 KVPENLEEQAISL-VGEDLYQALIKGYTEKQWGRSA-KELPAFII-KRIPVRFTFDNNY-FSDRYQGIPVGGYTKLIEKM  201 (367)
T ss_dssp             CCCCSHHHHHHHH-HHHHHHHHHTHHHHHHHHSSCG-GGSCTTSS-CCCCBCSSSCCCS-CCCSEEECBTTCHHHHHHHH
T ss_pred             CCCccHHHHHHHH-HhHHHHHHHHHHHHhhhhCCCh-HHcCHHHH-hhceeeecccccc-ccchhhcccCCCHHHHHHHH
Confidence            1457899998776 44444 34554433 2332111 11111000 0000000000000 12334 38999999999998


Q ss_pred             HHHHHHcCcEEEcCcceeEEEecCCCcEEEEEecCceEEcCEEEECCCCC---cchhhh-hccceeEEeeeehh
Q 020312          239 ARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYL---PNKVII-IMLIGFILIFLVRR  308 (328)
Q Consensus       239 ~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~~g~~~~ad~vV~~~~~~---~~~~~~-~~~~~~~~~~~~~~  308 (328)
                      ++     |++|++|++|++|..    .+        .+.||+||++++.-   .-.+.. ...+..++.++++.
T Consensus       202 ~~-----g~~i~l~~~V~~i~~----~v--------~~~~D~VV~a~p~~~~~~~~l~~l~y~s~~~v~~~~d~  258 (367)
T 1i8t_A          202 LE-----GVDVKLGIDFLKDKD----SL--------ASKAHRIIYTGPIDQYFDYRFGALEYRSLKFETERHEF  258 (367)
T ss_dssp             HT-----TSEEECSCCGGGSHH----HH--------HTTEEEEEECSCHHHHTTTTTCCCCEEEEEEEEEEESS
T ss_pred             hc-----CCEEEeCCceeeech----hh--------hccCCEEEEeccHHHHHHHhhCCCCCceEEEEEEEecc
Confidence            64     689999999999852    11        25689999887641   111222 34445555565554

>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*

Probab=99.76  E-value=2e-18  Score=153.28  Aligned_cols=229  Identities=13%  Similarity=0.146  Sum_probs=132.2

Q ss_pred             CcccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCcccccchHHHHhhhcCCCCCCCccCCCCCeEE-ecCcceEe
Q 020312            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNV-DMIPKFII   81 (328)
Q Consensus         3 ~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~   81 (328)
                      +++||+|||||++||++|++|+++|++|+|+|+++++||++.+....                  ..++.+ +.|++++.
T Consensus         2 ~~~~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~~~GG~~~~~~~~------------------~~g~~~~~~G~~~~~   63 (384)
T 2bi7_A            2 KSKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGGNSYDARDS------------------ETNVMVHVYGPHIFH   63 (384)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSSGGGCEEECT------------------TTCCEEETTSCCCEE
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEEecCCcCCcccccccc------------------CCCceEeeCCceEEC
Confidence            35899999999999999999999999999999999999999887541                  124554 88999988


Q ss_pred             cCchHHHHHHh-cCCCCeeEEEeeCceeEeeCCeEEEcCCCchhhhcCCCCChhhHHHHHHHHHHHhhcccCCCcccccc
Q 020312           82 ANGALVRVLIH-TDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGM  160 (328)
Q Consensus        82 ~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (328)
                      ..++.+..+.. .+.  ..  ........+.+|+.+.+|.. ...+...+...+.+....+++   .+.....       
T Consensus        64 ~~~~~~~~~~~~l~~--~~--~~~~~~~~~~~g~~~~~P~~-~~~~~~l~~~~~~~~~~~~~l---~~~~~~~-------  128 (384)
T 2bi7_A           64 TDNETVWNYVNKHAE--MM--PYVNRVKATVNGQVFSLPIN-LHTINQFFSKTCSPDEARALI---AEKGDST-------  128 (384)
T ss_dssp             ESCHHHHHHHHTTSC--EE--ECCCCEEEEETTEEEEESCC-HHHHHHHTTCCCCHHHHHHHH---HHHSCCS-------
T ss_pred             CCCHHHHHHHHHHhh--hc--ccccceEEEECCEEEECCCC-hhHHHHHhcccCCHHHHHHHH---HHhhhcc-------
Confidence            76544443333 332  11  11223345568888888754 222221110001122233222   2221110       


Q ss_pred             cCCCCCHHHHHHhcCCChhH-HHHHhhhh-hcccCCCCCCCchHHHHHHHHHHHHhhhcccCCCeE-EeecCCcCcHHHH
Q 020312          161 DLTRVTTRELIAKYGLDDNT-IDFIGHAL-ALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPY-IYPLYGLGELPQA  237 (328)
Q Consensus       161 ~~~~~s~~~~~~~~~~~~~~-~~~~~~~~-~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~-~~~~gG~~~l~~~  237 (328)
                      ..+..++.+|+.+. +.+.+ ..++.+.. +.|..+. ...+.... .++.........+ ....+ .+|+||+++++++
T Consensus       129 ~~~~~sl~e~~~~~-~g~~~~~~~~~p~~~~~~~~~~-~~ls~~~~-~r~~~~~~~~~~~-~~~~~~~~p~gG~~~l~~~  204 (384)
T 2bi7_A          129 IADPQTFEEEALRF-IGKELYEAFFKGYTIKQWGMQP-SELPASIL-KRLPVRFNYDDNY-FNHKFQGMPKCGYTQMIKS  204 (384)
T ss_dssp             CSSCCBHHHHHHHH-HCHHHHHHHTHHHHHHHHSSCG-GGSBGGGC-CSCCCCSSSCCCS-CCCSEEEEETTHHHHHHHH
T ss_pred             CCCCcCHHHHHHHh-hcHHHHHHHHHHHHHHHhCCCH-HHhCHHHH-hcccccccccccc-ccccccEEECcCHHHHHHH
Confidence            12567899998776 44544 44554433 2332111 11111000 0000000000011 12334 3999999999999


Q ss_pred             HHHHHHHcCcEEEcCccee-EEEecCCCcEEEEEecCceEEcCEEEECCCC
Q 020312          238 FARLSAVYGGTYMLNKPEC-KVEFDEEGKVVGVTSEGETAKCKKVVCDPSY  287 (328)
Q Consensus       238 l~~~~~~~G~~i~~~~~V~-~I~~~~~~~v~~v~~~g~~~~ad~vV~~~~~  287 (328)
                      |++   +.|++|++|++|+ +|..                .||+||++++.
T Consensus       205 l~~---~~g~~I~l~~~V~~~i~~----------------~~d~VI~a~p~  236 (384)
T 2bi7_A          205 ILN---HENIKVDLQREFIVEERT----------------HYDHVFYSGPL  236 (384)
T ss_dssp             HHC---STTEEEEESCCCCGGGGG----------------GSSEEEECSCH
T ss_pred             HHh---cCCCEEEECCeeehhhhc----------------cCCEEEEcCCH
Confidence            864   4689999999999 8842                28888877653

>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*

Probab=99.75  E-value=1.7e-17  Score=151.76  Aligned_cols=241  Identities=15%  Similarity=0.141  Sum_probs=128.3

Q ss_pred             CCCcccEEEECCChhHHHHHHhhhhCCC-eEEEeccCCCCCCcccccchHHHHhhhcCCCCCCCccCCCCCeEEecCcce
Q 020312            1 MDEEYDVIVLGTGLKECILSGLLSVDGL-KVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKF   79 (328)
Q Consensus         1 ~~~~~dvvIvG~G~aGl~aA~~L~~~G~-~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~   79 (328)
                      ++.++||+|||||++||+||++|+++|+ +|+|+|+++++||++.+...                    .++.+|.|+++
T Consensus         1 ~~~~~~~~iiG~G~~g~~~a~~l~~~g~~~v~~~e~~~~~gg~~~~~~~--------------------~~~~~d~g~~~   60 (472)
T 1b37_A            1 ATVGPRVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGGRMHKTNF--------------------AGINVELGANW   60 (472)
T ss_dssp             ----CCEEEECCBHHHHHHHHHHHHTTCCCEEEECSSSSSBTTSCEEEE--------------------TTEEEESSCCE
T ss_pred             CCCCCeEEEECCCHHHHHHHHHHHhcCCCceEEEeCCCCCCCceeeccc--------------------CCcEEeeCCeE
Confidence            3567899999999999999999999998 89999999999999998764                    46889999999


Q ss_pred             Eec-----CchHHHHHHh-cCCCCeeEEEeeCc--eeEee-CCeEEEcCCCchhhhcCCCCChhhH-HHHHHHHHHHhhc
Q 020312           80 IIA-----NGALVRVLIH-TDVTKYLYFKAVDG--SFVYN-KGKVHKVPATDMEALKSPLMGIFEK-RRARKFFIYVQDY  149 (328)
Q Consensus        80 ~~~-----~~~~~~~~~~-~~~~~~l~~~~~~~--~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  149 (328)
                      +..     ..++.+.+.+ .++...  ......  ...+. +|+.+..+     ....    .+.. .....+.+.....
T Consensus        61 ~~~~~~~~~~~~~~~~~~~lgl~~~--~~~~~~~~~~~~~~~g~~~~~~-----~~~~----~~~~~~~~~~~~~~~~~~  129 (472)
T 1b37_A           61 VEGVNGGKMNPIWPIVNSTLKLRNF--RSDFDYLAQNVYKEDGGVYDED-----YVQK----RIELADSVEEMGEKLSAT  129 (472)
T ss_dssp             EEEESSSSCCTHHHHHHTTSCCCEE--ECCCTTGGGCEECSSSSBCCHH-----HHHH----HHHHHHHHHHHHHHHHHT
T ss_pred             EeccCCCCCCHHHHHHHhhcCCcee--eccCccccceeEcCCCCCCCHH-----HHHH----HHHHHHHHHHHHHHHHHh
Confidence            973     2345555444 444322  111111  11221 33322111     0000    0100 1112222211111


Q ss_pred             ccCCCcccccccCCCCCHHH--HHHhcCC--C-hhHHHHHhhhh-hcccCCCCCCCchHHHHHHHHHHHHhhhcccCCC-
Q 020312          150 DENDPKTHEGMDLTRVTTRE--LIAKYGL--D-DNTIDFIGHAL-ALHRDDRYLNEPALDTVKRMKLYAESIARFQGGS-  222 (328)
Q Consensus       150 ~~~~~~~~~~~~~~~~s~~~--~~~~~~~--~-~~~~~~~~~~~-~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~-  222 (328)
                      .  .+     ...+.+++.+  ++.+...  . .....++.... ...........++...... .    .+..+ +.. 
T Consensus       130 ~--~~-----~~~~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~-~----~~~~~-~~~~  196 (472)
T 1b37_A          130 L--HA-----SGRDDMSILAMQRLNEHQPNGPATPVDMVVDYYKFDYEFAEPPRVTSLQNTVPL-A----TFSDF-GDDV  196 (472)
T ss_dssp             S--CT-----TCTTCCBHHHHHHHHHTSSSSCCSHHHHHHHHHHTHHHHSSCGGGBBSTTTSSC-H----HHHHH-CSEE
T ss_pred             h--cc-----ccchhhhHHHHHHHhhhcccccccHHHHHHHHHHHhhhhcccccccchhhcccc-c----ccccc-CCce
Confidence            1  00     0113445443  3433211  1 11122222111 0000000000000000000 0    00111 222 


Q ss_pred             eEEeecCCcCcHHHHHHHHHHHc--------CcEEEcCcceeEEEecCCCcEEEEEe-cCceEEcCEEEECCCC
Q 020312          223 PYIYPLYGLGELPQAFARLSAVY--------GGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSY  287 (328)
Q Consensus       223 ~~~~~~gG~~~l~~~l~~~~~~~--------G~~i~~~~~V~~I~~~~~~~v~~v~~-~g~~~~ad~vV~~~~~  287 (328)
                      .+..++||++.++++|++.+.+.        |++|+++++|++|..+ ++.+. |++ +|++++||+||+++++
T Consensus       197 ~~~~~~gG~~~l~~~l~~~l~~~~~~~~~i~~~~i~~~~~V~~i~~~-~~~v~-v~~~~g~~~~ad~vI~a~~~  268 (472)
T 1b37_A          197 YFVADQRGYEAVVYYLAGQYLKTDDKSGKIVDPRLQLNKVVREIKYS-PGGVT-VKTEDNSVYSADYVMVSASL  268 (472)
T ss_dssp             EEECCTTCTTHHHHHHHHTTSCBCTTTCCBCCTTEESSCCEEEEEEC-SSCEE-EEETTSCEEEESEEEECSCH
T ss_pred             eeeecCCcHHHHHHHHHHhccccccccccccccEEEcCCEEEEEEEc-CCcEE-EEECCCCEEEcCEEEEecCH
Confidence            23344799999999998876654        7899999999999998 66655 666 7778999999988764

>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*

Probab=99.62  E-value=2.6e-14  Score=136.74  Aligned_cols=73  Identities=16%  Similarity=0.182  Sum_probs=59.0

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCcccccchHHHHhhhcCCCCCCCccCCCCCeEEecCcceEecC
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIAN   83 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~   83 (328)
                      .+||+|||||++||+||+.|+++|++|+|+|+++++||++.+.+.                   ..++.+|+|..++...
T Consensus       336 ~~~v~viG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~ggri~T~~~-------------------~~G~~vd~Ga~~i~G~  396 (776)
T 4gut_A          336 NKSVIIIGAGPAGLAAARQLHNFGIKVTVLEAKDRIGGRVWDDKS-------------------FKGVTVGRGAQIVNGC  396 (776)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSCTTCCEECC-------------------STTCCEESSCCEEECC
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCcEEEEecccceeceeeeccc-------------------cCCeEeccCCeEEeCC
Confidence            479999999999999999999999999999999999999988752                   1467889999998643


Q ss_pred             --chHHHHHHhcCC
Q 020312           84 --GALVRVLIHTDV   95 (328)
Q Consensus        84 --~~~~~~~~~~~~   95 (328)
                        +++.....+.++
T Consensus       397 ~~np~~~l~~~lGl  410 (776)
T 4gut_A          397 INNPVALMCEQLGI  410 (776)
T ss_dssp             TTCHHHHHHHHHTC
T ss_pred             ccChHHHHHHHhCC
Confidence              344444444444

>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*

Probab=99.61  E-value=1.1e-14  Score=131.75  Aligned_cols=60  Identities=13%  Similarity=0.183  Sum_probs=51.4

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCc---ceeEEEecCCCcEEEEEe-cCceEEcCEEEECCCCCcchh
Q 020312          232 GELPQAFARLSAVYGGTYMLNK---PECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLPNKV  292 (328)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~---~V~~I~~~~~~~v~~v~~-~g~~~~ad~vV~~~~~~~~~~  292 (328)
                      ..++++|.+.++++|++|++++   +|++|..+ ++++++|++ ++++++||.||++++.+...+
T Consensus       161 ~~~~~~L~~~a~~~Gv~i~~~t~~~~V~~i~~~-~~~v~gV~t~~G~~i~Ad~VV~AtG~~s~~l  224 (438)
T 3dje_A          161 RNALVAAAREAQRMGVKFVTGTPQGRVVTLIFE-NNDVKGAVTADGKIWRAERTFLCAGASAGQF  224 (438)
T ss_dssp             HHHHHHHHHHHHHTTCEEEESTTTTCEEEEEEE-TTEEEEEEETTTEEEECSEEEECCGGGGGGT
T ss_pred             HHHHHHHHHHHHhcCCEEEeCCcCceEEEEEec-CCeEEEEEECCCCEEECCEEEECCCCChhhh
Confidence            5688999999999999999999   99999998 888888888 566899999998887655443

>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}

Probab=99.60  E-value=1.4e-14  Score=126.81  Aligned_cols=82  Identities=9%  Similarity=0.067  Sum_probs=59.9

Q ss_pred             eEEeecCCcCcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe-cCceEEcCEEEECCCC------Cc---c--
Q 020312          223 PYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSY------LP---N--  290 (328)
Q Consensus       223 ~~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~-~g~~~~ad~vV~~~~~------~~---~--  290 (328)
                      ..+...+|++.+++++++.   .|++|+++++|++|..+ ++.+. |++ +|+.++||.||++++.      ++   +  
T Consensus       103 ~~~~~~~g~~~l~~~l~~~---~g~~i~~~~~V~~i~~~-~~~~~-v~~~~g~~~~ad~vV~A~p~~~~~~ll~~~~~~l  177 (342)
T 3qj4_A          103 CNFVAPQGISSIIKHYLKE---SGAEVYFRHRVTQINLR-DDKWE-VSKQTGSPEQFDLIVLTMPVPEILQLQGDITTLI  177 (342)
T ss_dssp             EEEECTTCTTHHHHHHHHH---HTCEEESSCCEEEEEEC-SSSEE-EEESSSCCEEESEEEECSCHHHHTTCBSTHHHHS
T ss_pred             cceecCCCHHHHHHHHHHh---cCCEEEeCCEEEEEEEc-CCEEE-EEECCCCEEEcCEEEECCCHHHHHHHhccccccc
Confidence            3456678999999998754   38999999999999998 66654 555 6777999999987653      11   1  


Q ss_pred             --hh----hh-hccceeEEeeeehhh
Q 020312          291 --KV----II-IMLIGFILIFLVRRI  309 (328)
Q Consensus       291 --~~----~~-~~~~~~~~~~~~~~~  309 (328)
                        ..    .. ...+.+++++++++.
T Consensus       178 ~~~~~~~l~~~~~~~~~~v~l~~~~~  203 (342)
T 3qj4_A          178 SECQRQQLEAVSYSSRYALGLFYEAG  203 (342)
T ss_dssp             CHHHHHHHHTCCBCCEEEEEEECSSC
T ss_pred             CHHHHHHHhcCCccccEEEEEEECCC
Confidence              11    11 566778888888753

>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}

Probab=99.59  E-value=3.9e-15  Score=131.46  Aligned_cols=60  Identities=10%  Similarity=0.093  Sum_probs=48.6

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe-cC--ceEEcCEEEECCCCCcchh
Q 020312          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EG--ETAKCKKVVCDPSYLPNKV  292 (328)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~-~g--~~~~ad~vV~~~~~~~~~~  292 (328)
                      ..++++|.+.++++|++|+++++|++|..+ ++..+.|++ +|  .+++||.||++++.++.++
T Consensus       150 ~~~~~~l~~~~~~~Gv~i~~~~~v~~i~~~-~~~~~~v~~~~g~~~~~~a~~VV~A~G~~s~~l  212 (369)
T 3dme_A          150 HALMLAYQGDAESDGAQLVFHTPLIAGRVR-PEGGFELDFGGAEPMTLSCRVLINAAGLHAPGL  212 (369)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEEC-TTSSEEEEECTTSCEEEEEEEEEECCGGGHHHH
T ss_pred             HHHHHHHHHHHHHCCCEEECCCEEEEEEEc-CCceEEEEECCCceeEEEeCEEEECCCcchHHH
Confidence            568899999999999999999999999998 555344666 55  3799999999888765544

>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A*

Probab=99.58  E-value=1.7e-14  Score=128.05  Aligned_cols=59  Identities=14%  Similarity=0.147  Sum_probs=49.9

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEecCceEEcCEEEECCCCCcchh
Q 020312          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKV  292 (328)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~~g~~~~ad~vV~~~~~~~~~~  292 (328)
                      ..++++|++.++++|++|+++++|++|..+ ++. +.|++++++++||+||++++.+...+
T Consensus       154 ~~~~~~l~~~a~~~Gv~i~~~~~V~~i~~~-~~~-~~V~t~~g~i~a~~VV~A~G~~s~~l  212 (381)
T 3nyc_A          154 DALHQGYLRGIRRNQGQVLCNHEALEIRRV-DGA-WEVRCDAGSYRAAVLVNAAGAWCDAI  212 (381)
T ss_dssp             HHHHHHHHHHHHHTTCEEESSCCCCEEEEE-TTE-EEEECSSEEEEESEEEECCGGGHHHH
T ss_pred             HHHHHHHHHHHHHCCCEEEcCCEEEEEEEe-CCe-EEEEeCCCEEEcCEEEECCChhHHHH
Confidence            568999999999999999999999999987 665 67888555999999999888765544

>3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A*

Probab=99.56  E-value=1.2e-14  Score=136.38  Aligned_cols=79  Identities=13%  Similarity=0.036  Sum_probs=59.5

Q ss_pred             cccEEEECCChhHHHHHHhhhhCC--------CeEEEeccCC-CC----------------CCcccccchHHHHhhhcCC
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDG--------LKVLHMDRND-YY----------------GGESSSLNLIQLWKRFRGN   58 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G--------~~V~vlE~~~-~~----------------GG~~~s~~~~~~~~~~~~~   58 (328)
                      ..+|+|||||++||+||++|+++|        ++|+|+|+++ ++                ||++.+.....   +.   
T Consensus        56 ~~~v~IiGaGiaGL~aA~~L~~~g~~~~~~~~~~V~v~E~~~~r~~~~~~g~~~~~~~g~~GGr~~t~~~~~---~~---  129 (721)
T 3ayj_A           56 NYRIAIVGGGAGGIAALYELGRLAATLPAGSGIDVQIYEADPDSFLHDRPGIKAIKVRGLKAGRVSAALVHN---GD---  129 (721)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHHTTSCTTCEEEEEEECCCTTBGGGCC----CEECTTCEETTEEEEEECS---SC---
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCcccccCCCceEEEEeccCcccccccchhhHHHhcCcCCceEEEEEccC---Cc---
Confidence            478999999999999999999999        9999999999 99                99998875410   00   


Q ss_pred             CCCCCccCCCCCeEEecCcceEecCchH-HHHHHhc-CC
Q 020312           59 EQPPAHLGSSRDYNVDMIPKFIIANGAL-VRVLIHT-DV   95 (328)
Q Consensus        59 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~-~~   95 (328)
                             ....++.+++|++++...... .+.+.+. ++
T Consensus       130 -------~~~~~~~~e~G~~~~~~~~~~~~~~~~~l~gl  161 (721)
T 3ayj_A          130 -------PASGDTIYEVGAMRFPEIAGLTWHYASAAFGD  161 (721)
T ss_dssp             -------GGGCSEEEECSCCCEETTCHHHHHHHHHHHCT
T ss_pred             -------ccCCCcEEecCCEEecCccHHHHHHHHHhcCC
Confidence                   001468899999998866433 3333344 44

>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A

Probab=99.55  E-value=4.5e-13  Score=129.06  Aligned_cols=60  Identities=20%  Similarity=0.338  Sum_probs=54.2

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCcccccchHHHHhhhcCCCCCCCccCCCCCeEEecCcceEecC
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIAN   83 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~   83 (328)
                      .+||+|||||++||+||++|+++|++|+|||+++++||++.+++.                    .++..|+|++++...
T Consensus       278 ~~~v~viG~G~aGl~~A~~l~~~g~~v~v~E~~~~~GG~~~~~~~--------------------~~~~~~~G~~~~~~~  337 (852)
T 2xag_A          278 TGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATFRK--------------------GNYVADLGAMVVTGL  337 (852)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTCCEEEE--------------------TTEEEESSCCEECCS
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCcEEEEEecCcCCCceeeecc--------------------cccchhcCceEecCC
Confidence            479999999999999999999999999999999999999988754                    468899999998653

>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A

Probab=99.54  E-value=3.3e-13  Score=127.95  Aligned_cols=60  Identities=20%  Similarity=0.338  Sum_probs=54.1

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCcccccchHHHHhhhcCCCCCCCccCCCCCeEEecCcceEecC
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIAN   83 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~   83 (328)
                      .+||+|||||++||+||++|+++|++|+|+|+++++||++.+.+.                    .++..|+|++++...
T Consensus       107 ~~~v~viG~G~~gl~~a~~l~~~g~~v~~~e~~~~~gg~~~~~~~--------------------~~~~~~~G~~~~~~~  166 (662)
T 2z3y_A          107 TGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATFRK--------------------GNYVADLGAMVVTGL  166 (662)
T ss_dssp             CCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSSBTTCCEEEE--------------------TTEEEESSCCEECCS
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCccccccc--------------------cCchhhcCcEEEeCC
Confidence            489999999999999999999999999999999999999988753                    468889999998653

>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=99.54  E-value=1.4e-14  Score=128.61  Aligned_cols=60  Identities=20%  Similarity=0.184  Sum_probs=51.1

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEecCceEEcCEEEECCCCCcchh
Q 020312          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKV  292 (328)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~~g~~~~ad~vV~~~~~~~~~~  292 (328)
                      ..+++.|.+.++++|++++++++|++|..+ ++.+++|++++++++||.||.+++..+..+
T Consensus       149 ~~l~~~l~~~~~~~Gv~i~~~~~v~~i~~~-~~~v~gv~~~~g~i~a~~VV~A~G~~s~~l  208 (382)
T 1y56_B          149 FEATTAFAVKAKEYGAKLLEYTEVKGFLIE-NNEIKGVKTNKGIIKTGIVVNATNAWANLI  208 (382)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEES-SSBEEEEEETTEEEECSEEEECCGGGHHHH
T ss_pred             HHHHHHHHHHHHHCCCEEECCceEEEEEEE-CCEEEEEEECCcEEECCEEEECcchhHHHH
Confidence            568888999999999999999999999988 788887888555899999999888766544

>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}

Probab=99.52  E-value=1.5e-13  Score=122.88  Aligned_cols=61  Identities=13%  Similarity=0.033  Sum_probs=48.2

Q ss_pred             eecCCcCcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEecCceEEcCEEEECCCCC
Q 020312          226 YPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYL  288 (328)
Q Consensus       226 ~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~~g~~~~ad~vV~~~~~~  288 (328)
                      ++......+.+.|.+.+++.|++++++++|++|..+ ++. +.|++++++++||.||.+.+..
T Consensus       126 ~~~~~~~~l~~~L~~~l~~~Gv~i~~~~~V~~i~~~-~~~-~~V~~~~g~i~ad~VIlAtG~~  186 (417)
T 3v76_A          126 FCDHSAKDIIRMLMAEMKEAGVQLRLETSIGEVERT-ASG-FRVTTSAGTVDAASLVVASGGK  186 (417)
T ss_dssp             EESSCHHHHHHHHHHHHHHHTCEEECSCCEEEEEEE-TTE-EEEEETTEEEEESEEEECCCCS
T ss_pred             eeCCCHHHHHHHHHHHHHHCCCEEEECCEEEEEEEe-CCE-EEEEECCcEEEeeEEEECCCCc
Confidence            344444678889999999999999999999999987 554 5577754599999999876654

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=99.51  E-value=6.4e-13  Score=126.54  Aligned_cols=58  Identities=12%  Similarity=-0.008  Sum_probs=48.8

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe-cCceEEcCEEEECCCCCcch
Q 020312          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLPNK  291 (328)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~-~g~~~~ad~vV~~~~~~~~~  291 (328)
                      ..++++|.+.+++.|++|+++++|++|..+ +++ +.|++ +++++.||.||++.+.....
T Consensus       417 ~~l~~aL~~~a~~~Gv~i~~~t~V~~l~~~-~~~-v~V~t~~G~~i~Ad~VVlAtG~~s~~  475 (676)
T 3ps9_A          417 AELTRNVLELAQQQGLQIYYQYQLQNFSRK-DDC-WLLNFAGDQQATHSVVVLANGHQISR  475 (676)
T ss_dssp             HHHHHHHHHHHHHTTCEEEESCCEEEEEEE-TTE-EEEEETTSCEEEESEEEECCGGGGGC
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCeeeEEEEe-CCe-EEEEECCCCEEECCEEEECCCcchhc
Confidence            568899999999999999999999999998 666 46777 67789999999887765443

>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*

Probab=99.50  E-value=5.3e-13  Score=119.14  Aligned_cols=58  Identities=22%  Similarity=0.159  Sum_probs=47.0

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEecCceEEcCEEEECCCCCcch
Q 020312          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNK  291 (328)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~~g~~~~ad~vV~~~~~~~~~  291 (328)
                      ..+++.|.+.+++.|++|+++++|++|+.+ ++.+ .|++++++++||.||.+.+.++..
T Consensus       153 ~~~~~~l~~~a~~~Gv~i~~~~~V~~i~~~-~~~v-~v~t~~g~i~a~~VV~A~G~~s~~  210 (397)
T 2oln_A          153 RGTLAALFTLAQAAGATLRAGETVTELVPD-ADGV-SVTTDRGTYRAGKVVLACGPYTND  210 (397)
T ss_dssp             HHHHHHHHHHHHHTTCEEEESCCEEEEEEE-TTEE-EEEESSCEEEEEEEEECCGGGHHH
T ss_pred             HHHHHHHHHHHHHcCCEEECCCEEEEEEEc-CCeE-EEEECCCEEEcCEEEEcCCcChHH
Confidence            467888989899999999999999999987 6654 466666689999999888765443

>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A*

Probab=99.49  E-value=2.5e-13  Score=125.11  Aligned_cols=56  Identities=18%  Similarity=0.268  Sum_probs=46.2

Q ss_pred             cHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe--cCc--eEEcC-EEEECCCCC
Q 020312          233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS--EGE--TAKCK-KVVCDPSYL  288 (328)
Q Consensus       233 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~--~g~--~~~ad-~vV~~~~~~  288 (328)
                      .+.+.|.+.++++|++|+++++|++|..++++++++|+.  +++  ++.|| .||++++-+
T Consensus       203 ~l~~~L~~~~~~~Gv~i~~~t~v~~L~~~~~g~v~GV~~~~~g~~~~i~A~k~VVlAtGG~  263 (510)
T 4at0_A          203 MLMKPLVETAEKLGVRAEYDMRVQTLVTDDTGRVVGIVAKQYGKEVAVRARRGVVLATGSF  263 (510)
T ss_dssp             HHHHHHHHHHHHTTCEEECSEEEEEEEECTTCCEEEEEEEETTEEEEEEEEEEEEECCCCC
T ss_pred             HHHHHHHHHHHHcCCEEEecCEeEEEEECCCCcEEEEEEEECCcEEEEEeCCeEEEeCCCh
Confidence            789999999999999999999999999874688888876  333  58996 788766543

>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*

Probab=99.48  E-value=3.6e-13  Score=131.05  Aligned_cols=60  Identities=20%  Similarity=0.238  Sum_probs=51.4

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEecCceEEcCEEEECCCCCcchh
Q 020312          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKV  292 (328)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~~g~~~~ad~vV~~~~~~~~~~  292 (328)
                      ..++++|++.++++|++|+++++|++|..+ ++++++|++++++++||.||++++.+...+
T Consensus       151 ~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~~-~~~v~~V~t~~G~i~Ad~VV~AaG~~s~~l  210 (830)
T 1pj5_A          151 ARAVQLLIKRTESAGVTYRGSTTVTGIEQS-GGRVTGVQTADGVIPADIVVSCAGFWGAKI  210 (830)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEEE-TTEEEEEEETTEEEECSEEEECCGGGHHHH
T ss_pred             HHHHHHHHHHHHHcCCEEECCceEEEEEEe-CCEEEEEEECCcEEECCEEEECCccchHHH
Confidence            468899999999999999999999999987 788888888666899999999887765443

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=99.47  E-value=1e-12  Score=125.26  Aligned_cols=57  Identities=12%  Similarity=0.082  Sum_probs=46.9

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe-cCc-eEEcCEEEECCCCCcc
Q 020312          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGE-TAKCKKVVCDPSYLPN  290 (328)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~-~g~-~~~ad~vV~~~~~~~~  290 (328)
                      ..++++|.+.+++.|++|+++++|++|+.+ +++ +.|++ +|+ +++||.||++++....
T Consensus       412 ~~l~~aL~~~a~~~Gv~i~~~t~V~~l~~~-~~~-v~V~t~~G~~~i~Ad~VVlAtG~~s~  470 (689)
T 3pvc_A          412 SDLTHALMMLAQQNGMTCHYQHELQRLKRI-DSQ-WQLTFGQSQAAKHHATVILATGHRLP  470 (689)
T ss_dssp             HHHHHHHHHHHHHTTCEEEESCCEEEEEEC-SSS-EEEEEC-CCCCEEESEEEECCGGGTT
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCeEeEEEEe-CCe-EEEEeCCCcEEEECCEEEECCCcchh
Confidence            568999999999999999999999999998 666 45666 556 8999999988776543

>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*

Probab=99.45  E-value=2.7e-12  Score=114.72  Aligned_cols=68  Identities=24%  Similarity=0.177  Sum_probs=54.1

Q ss_pred             EEeecCCc---CcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEecCceEEcCEEEECCCCCcchh
Q 020312          224 YIYPLYGL---GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKV  292 (328)
Q Consensus       224 ~~~~~gG~---~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~~g~~~~ad~vV~~~~~~~~~~  292 (328)
                      .+++.+|.   ..+++.|.+.+++.|++++++++|++|..+ ++++++|+++++++.||.||.+.+..+..+
T Consensus       163 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~i~~~~~v~~i~~~-~~~~~~v~~~~g~~~a~~vV~a~G~~s~~l  233 (405)
T 2gag_B          163 TWQPRAGIAKHDHVAWAFARKANEMGVDIIQNCEVTGFIKD-GEKVTGVKTTRGTIHAGKVALAGAGHSSVL  233 (405)
T ss_dssp             EEETTCBBCCHHHHHHHHHHHHHHTTCEEECSCCEEEEEES-SSBEEEEEETTCCEEEEEEEECCGGGHHHH
T ss_pred             EEeCCCccCCHHHHHHHHHHHHHHCCCEEEcCCeEEEEEEe-CCEEEEEEeCCceEECCEEEECCchhHHHH
Confidence            34444443   368888999999999999999999999988 778888888544899999998888765443

>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1

Probab=99.44  E-value=1.4e-12  Score=118.11  Aligned_cols=58  Identities=19%  Similarity=0.192  Sum_probs=49.0

Q ss_pred             cCcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe-cCceEEcCEEEECCCCCc
Q 020312          231 LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLP  289 (328)
Q Consensus       231 ~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~-~g~~~~ad~vV~~~~~~~  289 (328)
                      ...+.+.|.+.+++.|++|+++++|++|..+ ++++++|++ ++++++||.||.+.+..+
T Consensus       133 ~~~l~~~L~~~~~~~GV~i~~~~~V~~i~~~-~~~v~~V~~~~G~~i~Ad~VVlAtGg~s  191 (447)
T 2i0z_A          133 AQSVVDALLTRLKDLGVKIRTNTPVETIEYE-NGQTKAVILQTGEVLETNHVVIAVGGKS  191 (447)
T ss_dssp             HHHHHHHHHHHHHHTTCEEECSCCEEEEEEE-TTEEEEEEETTCCEEECSCEEECCCCSS
T ss_pred             HHHHHHHHHHHHHHCCCEEEeCcEEEEEEec-CCcEEEEEECCCCEEECCEEEECCCCCc
Confidence            3568889999999999999999999999987 788788888 666799999998766544

>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans}

Probab=99.43  E-value=8.5e-13  Score=122.68  Aligned_cols=61  Identities=23%  Similarity=0.261  Sum_probs=51.3

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe-c---C--ceEEcCEEEECCCCCcchhh
Q 020312          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-E---G--ETAKCKKVVCDPSYLPNKVI  293 (328)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~-~---g--~~~~ad~vV~~~~~~~~~~~  293 (328)
                      ..++.++++.++++|++|+++++|++|..+ ++++++|++ +   +  ..++||.||.+++.+...+.
T Consensus       170 ~~l~~~L~~~a~~~G~~i~~~~~V~~l~~~-~g~v~gV~~~d~~tg~~~~i~A~~VV~AaG~~s~~l~  236 (561)
T 3da1_A          170 ARLTLEIMKEAVARGAVALNYMKVESFIYD-QGKVVGVVAKDRLTDTTHTIYAKKVVNAAGPWVDTLR  236 (561)
T ss_dssp             HHHHHHHHHHHHHTTCEEEESEEEEEEEEE-TTEEEEEEEEETTTCCEEEEEEEEEEECCGGGHHHHH
T ss_pred             HHHHHHHHHHHHHcCCEEEcCCEEEEEEEc-CCeEEEEEEEEcCCCceEEEECCEEEECCCcchHHHH
Confidence            568899999999999999999999999998 888888876 2   3  46899999999888765554

>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1

Probab=99.42  E-value=2.1e-12  Score=115.16  Aligned_cols=43  Identities=21%  Similarity=0.277  Sum_probs=39.9

Q ss_pred             CCCcccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCcc
Q 020312            1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGES   43 (328)
Q Consensus         1 ~~~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~   43 (328)
                      ||+++||+|||||++|++||+.|+++|.+|+|+|+++.+|+..
T Consensus         1 MM~~~dViIIGgG~aGl~aA~~la~~G~~V~vlEk~~~~g~~~   43 (401)
T 2gqf_A            1 MSQYSENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRKI   43 (401)
T ss_dssp             CEEECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHH
T ss_pred             CCCCCCEEEECCcHHHHHHHHHHHhCCCCEEEEeCCCCCchhc
Confidence            7778999999999999999999999999999999999887654

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=99.41  E-value=2.7e-13  Score=114.79  Aligned_cols=63  Identities=22%  Similarity=0.288  Sum_probs=54.4

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCcccccchHHHHhhhcCCCCCCCccCCCCCeEEecCcceEecC
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIAN   83 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~   83 (328)
                      ++||+|||||++||+||+.|+++|++|+||||++.+||++++.+.                    .+..+|+|.+++...
T Consensus         2 t~dV~IIGaGpaGL~aA~~La~~G~~V~v~Ek~~~~GG~~~~~~~--------------------~~~~~d~g~~~~~~~   61 (336)
T 3kkj_A            2 TVPIAIIGTGIAGLSAAQALTAAGHQVHLFDKSRGSGGRMSSKRS--------------------DAGALDMGAQYFTAR   61 (336)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCEEEE--------------------TTEEEECSCCCBCCC
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCccccccc--------------------CCceeecCccccccC
Confidence            489999999999999999999999999999999999999988764                    357788888777655


Q ss_pred             chH
Q 020312           84 GAL   86 (328)
Q Consensus        84 ~~~   86 (328)
                      ...
T Consensus        62 ~~~   64 (336)
T 3kkj_A           62 DRR   64 (336)
T ss_dssp             SHH
T ss_pred             cHH
Confidence            443

>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}

Probab=99.41  E-value=3.1e-12  Score=113.08  Aligned_cols=57  Identities=14%  Similarity=0.194  Sum_probs=46.5

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEecCceEEcCEEEECCCCCcc
Q 020312          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPN  290 (328)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~~g~~~~ad~vV~~~~~~~~  290 (328)
                      ..+++.|.+.+++.|++++++++|++|+.+ ++. +.|++++++++||.||.+++.+..
T Consensus       149 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~-~~~-~~v~~~~g~~~a~~vV~a~G~~s~  205 (372)
T 2uzz_A          149 ELAIKTWIQLAKEAGCAQLFNCPVTAIRHD-DDG-VTIETADGEYQAKKAIVCAGTWVK  205 (372)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEEC-SSS-EEEEESSCEEEEEEEEECCGGGGG
T ss_pred             HHHHHHHHHHHHHCCCEEEcCCEEEEEEEc-CCE-EEEEECCCeEEcCEEEEcCCccHH
Confidence            468899999999999999999999999987 555 456675557999999988776544

>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*

Probab=99.39  E-value=8.6e-12  Score=110.86  Aligned_cols=59  Identities=10%  Similarity=0.179  Sum_probs=48.3

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEecCceEEcCEEEECCCCCcchh
Q 020312          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKV  292 (328)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~~g~~~~ad~vV~~~~~~~~~~  292 (328)
                      ..+++.|.+.++++|++++++++|++|+.+ ++. +.|++++++++||.||.+++..+..+
T Consensus       150 ~~~~~~l~~~~~~~Gv~i~~~~~v~~i~~~-~~~-~~v~~~~g~~~a~~vV~A~G~~~~~l  208 (389)
T 2gf3_A          150 ENCIRAYRELAEARGAKVLTHTRVEDFDIS-PDS-VKIETANGSYTADKLIVSMGAWNSKL  208 (389)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEEC-SSC-EEEEETTEEEEEEEEEECCGGGHHHH
T ss_pred             HHHHHHHHHHHHHCCCEEEcCcEEEEEEec-CCe-EEEEeCCCEEEeCEEEEecCccHHHH
Confidence            578899999999999999999999999987 555 34667666899999999888765443

>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A*

Probab=99.37  E-value=8.6e-12  Score=113.08  Aligned_cols=60  Identities=15%  Similarity=0.236  Sum_probs=49.9

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCcceeEEEe---------------cCCCcEEEEEecCceE--EcCEEEECCCCCcchh
Q 020312          232 GELPQAFARLSAVYGGTYMLNKPECKVEF---------------DEEGKVVGVTSEGETA--KCKKVVCDPSYLPNKV  292 (328)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~---------------~~~~~v~~v~~~g~~~--~ad~vV~~~~~~~~~~  292 (328)
                      ..+++.|.+.++++|++|+++++|++|..               + ++++++|+++++++  .||.||++++.+..++
T Consensus       181 ~~l~~~L~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~~~~~~~-~~~v~~V~t~~g~i~~~Ad~VV~AtG~~s~~l  257 (448)
T 3axb_A          181 EKVVDYYYRRASGAGVEFIFGRRVVGVELKPRVELGIEGEPLPWQ-EARASAAVLSDGTRVEVGEKLVVAAGVWSNRL  257 (448)
T ss_dssp             HHHHHHHHHHHHHTTCEEEESCCEEEEEEEESSCCCCTTSSCTTS-CEEEEEEEETTSCEEEEEEEEEECCGGGHHHH
T ss_pred             HHHHHHHHHHHHhCCCEEEcCCeEEEEEecccccccccccccccC-CCceEEEEeCCCEEeecCCEEEECCCcCHHHH
Confidence            46889999999999999999999999998               5 66777888854478  9999999888765544

>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A*

Probab=99.36  E-value=4.7e-12  Score=117.95  Aligned_cols=60  Identities=20%  Similarity=0.216  Sum_probs=49.1

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe----cCc--eEEcCEEEECCCCCcchh
Q 020312          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS----EGE--TAKCKKVVCDPSYLPNKV  292 (328)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~----~g~--~~~ad~vV~~~~~~~~~~  292 (328)
                      ..++..+++.++++|++|+++++|++|..+ ++++++|++    +++  +++||.||.+++.+...+
T Consensus       188 ~~l~~~l~~~a~~~Ga~i~~~t~V~~l~~~-~~~v~gV~~~d~~tg~~~~i~A~~VV~AaG~ws~~l  253 (571)
T 2rgh_A          188 ARLVIDNIKKAAEDGAYLVSKMKAVGFLYE-GDQIVGVKARDLLTDEVIEIKAKLVINTSGPWVDKV  253 (571)
T ss_dssp             HHHHHHHHHHHHHTTCEEESSEEEEEEEEE-TTEEEEEEEEETTTCCEEEEEBSCEEECCGGGHHHH
T ss_pred             HHHHHHHHHHHHHcCCeEEeccEEEEEEEe-CCEEEEEEEEEcCCCCEEEEEcCEEEECCChhHHHH
Confidence            457888888899999999999999999998 778877774    343  699999999888765544

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*

Probab=99.36  E-value=1.3e-12  Score=115.91  Aligned_cols=59  Identities=14%  Similarity=0.145  Sum_probs=48.6

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEecCceEEcCEEEECCCCCcchh
Q 020312          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKV  292 (328)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~~g~~~~ad~vV~~~~~~~~~~  292 (328)
                      ..+.+.|.+.+++.|++++++++|++|..+ ++.+ .|++++++++||.||.+.+..+..+
T Consensus       164 ~~~~~~l~~~~~~~g~~i~~~~~v~~i~~~-~~~~-~v~~~~g~~~a~~vV~A~G~~s~~l  222 (382)
T 1ryi_A          164 YFVCKAYVKAAKMLGAEIFEHTPVLHVERD-GEAL-FIKTPSGDVWANHVVVASGVWSGMF  222 (382)
T ss_dssp             HHHHHHHHHHHHHTTCEEETTCCCCEEECS-SSSE-EEEETTEEEEEEEEEECCGGGTHHH
T ss_pred             HHHHHHHHHHHHHCCCEEEcCCcEEEEEEE-CCEE-EEEcCCceEEcCEEEECCChhHHHH
Confidence            458889999999999999999999999987 6666 6777555899999998887765533

>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1

Probab=99.34  E-value=3e-12  Score=119.38  Aligned_cols=56  Identities=20%  Similarity=0.168  Sum_probs=46.2

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCcceeEEEecCC-CcEEEEEe---cCc--eEEcCEEEECCCCC
Q 020312          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEE-GKVVGVTS---EGE--TAKCKKVVCDPSYL  288 (328)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~-~~v~~v~~---~g~--~~~ad~vV~~~~~~  288 (328)
                      ..+.+.|.+.+++.|++|+++++|++|..+ + +++++|+.   +++  ++.||.||++.+-.
T Consensus       250 ~~l~~~L~~~~~~~gv~i~~~~~v~~l~~~-~~g~v~Gv~~~~~~g~~~~i~A~~VVlAtGg~  311 (566)
T 1qo8_A          250 PEIIDTLRKAAKEQGIDTRLNSRVVKLVVN-DDHSVVGAVVHGKHTGYYMIGAKSVVLATGGY  311 (566)
T ss_dssp             HHHHHHHHHHHHHTTCCEECSEEEEEEEEC-TTSBEEEEEEEETTTEEEEEEEEEEEECCCCC
T ss_pred             HHHHHHHHHHHHhcCCEEEeCCEEEEEEEC-CCCcEEEEEEEeCCCcEEEEEcCEEEEecCCc
Confidence            458889999999999999999999999998 6 88887765   454  58999988766553

>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*

Probab=99.34  E-value=4.2e-11  Score=111.76  Aligned_cols=57  Identities=16%  Similarity=0.107  Sum_probs=46.3

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe---cCc--eEEcCEEEECCCCC
Q 020312          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS---EGE--TAKCKKVVCDPSYL  288 (328)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~---~g~--~~~ad~vV~~~~~~  288 (328)
                      ..+.+.|.+.+++.|++|+++++|++|..++++++++|+.   +++  ++.||.||++.+-.
T Consensus       255 ~~l~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~i~a~~VVlAtGg~  316 (571)
T 1y0p_A          255 AHVVQVLYDNAVKRNIDLRMNTRGIEVLKDDKGTVKGILVKGMYKGYYWVKADAVILATGGF  316 (571)
T ss_dssp             HHHHHHHHHHHHHTTCEEESSEEEEEEEECTTSCEEEEEEEETTTEEEEEECSEEEECCCCC
T ss_pred             HHHHHHHHHHHHhcCCEEEeCCEeeEeEEcCCCeEEEEEEEeCCCcEEEEECCeEEEeCCCc
Confidence            4688889999999999999999999999882388887765   454  68999998776553

>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}

Probab=99.31  E-value=9.4e-12  Score=114.48  Aligned_cols=58  Identities=19%  Similarity=0.280  Sum_probs=50.5

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe-cCceEEcCEEEECCCCCcc
Q 020312          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLPN  290 (328)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~-~g~~~~ad~vV~~~~~~~~  290 (328)
                      ..+.+.|.+.+++.|++|+++++|++|..+ ++++++|++ +++++.||.||++.+..+.
T Consensus       220 ~~l~~~L~~~l~~~Gv~I~~~t~V~~I~~~-~~~v~gV~l~~G~~i~Ad~VVlA~G~~s~  278 (549)
T 3nlc_A          220 VTMIEKMRATIIELGGEIRFSTRVDDLHME-DGQITGVTLSNGEEIKSRHVVLAVGHSAR  278 (549)
T ss_dssp             HHHHHHHHHHHHHTTCEEESSCCEEEEEES-SSBEEEEEETTSCEEECSCEEECCCTTCH
T ss_pred             HHHHHHHHHHHHhcCCEEEeCCEEEEEEEe-CCEEEEEEECCCCEEECCEEEECCCCChh
Confidence            457777888888899999999999999998 788888888 6778999999999888775

>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A*

Probab=99.27  E-value=4e-11  Score=111.95  Aligned_cols=56  Identities=20%  Similarity=0.162  Sum_probs=44.9

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe----cCc--eEEcCEEEECCCC
Q 020312          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS----EGE--TAKCKKVVCDPSY  287 (328)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~----~g~--~~~ad~vV~~~~~  287 (328)
                      ..+.+.|.+.+++.|++|+++++|++|..++++++++|..    +++  .+.||.||++.+-
T Consensus       143 ~~l~~~L~~~~~~~gv~i~~~~~v~~L~~~~~g~v~Gv~~~~~~~g~~~~i~A~~VVlAtGg  204 (588)
T 2wdq_A          143 HALLHTLYQQNLKNHTTIFSEWYALDLVKNQDGAVVGCTALCIETGEVVYFKARATVLATGG  204 (588)
T ss_dssp             HHHHHHHHHHHHHTTCEEEETEEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEEEECCCC
T ss_pred             HHHHHHHHHHHHhCCCEEEeCcEEEEEEECCCCEEEEEEEEEcCCCeEEEEEcCEEEECCCC
Confidence            4688889998889999999999999999853577877764    344  5899998876554

>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*

Probab=99.26  E-value=2.5e-11  Score=111.47  Aligned_cols=59  Identities=14%  Similarity=0.136  Sum_probs=48.4

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe----cCc--eEEcCEEEECCCCCcchh
Q 020312          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS----EGE--TAKCKKVVCDPSYLPNKV  292 (328)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~----~g~--~~~ad~vV~~~~~~~~~~  292 (328)
                      ..++.++++.++++|++++++++|++|..+ + ++++|++    +|+  +++||.||.+++.+...+
T Consensus       149 ~~l~~~l~~~a~~~Gv~i~~~~~V~~l~~~-~-~~~~V~~~d~~~G~~~~i~A~~VV~AtG~~s~~l  213 (501)
T 2qcu_A          149 ARLVLANAQMVVRKGGEVLTRTRATSARRE-N-GLWIVEAEDIDTGKKYSWQARGLVNATGPWVKQF  213 (501)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSEEEEEEEEE-T-TEEEEEEEETTTCCEEEEEESCEEECCGGGHHHH
T ss_pred             HHHHHHHHHHHHHcCCEEEcCcEEEEEEEe-C-CEEEEEEEECCCCCEEEEECCEEEECCChhHHHH
Confidence            568899999999999999999999999987 5 5667765    454  799999999888765543

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}

Probab=99.25  E-value=2.1e-11  Score=109.62  Aligned_cols=57  Identities=12%  Similarity=0.165  Sum_probs=43.1

Q ss_pred             cHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe-cCc--eEEcCEEEECCCCCc
Q 020312          233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGE--TAKCKKVVCDPSYLP  289 (328)
Q Consensus       233 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~-~g~--~~~ad~vV~~~~~~~  289 (328)
                      .+.+.|.+.+++.|++++++++|++|..++++..+.+++ +|+  +++||.||.+.+..+
T Consensus       107 ~~~~~L~~~a~~~gv~i~~~~~v~~i~~~~~~~~v~v~~~~g~~~~~~a~~vV~A~G~~s  166 (421)
T 3nix_A          107 NFDKTLADEAARQGVDVEYEVGVTDIKFFGTDSVTTIEDINGNKREIEARFIIDASGYGR  166 (421)
T ss_dssp             HHHHHHHHHHHHHTCEEECSEEEEEEEEETTEEEEEEEETTSCEEEEEEEEEEECCGGGC
T ss_pred             HHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcCCCCEEEEEcCEEEECCCCch
Confidence            456667777888899999999999999873333455555 666  699999998776543

>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ...

Probab=99.23  E-value=7.4e-11  Score=110.40  Aligned_cols=55  Identities=18%  Similarity=0.270  Sum_probs=45.4

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe----cCc--eEEcCEEEECCCC
Q 020312          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS----EGE--TAKCKKVVCDPSY  287 (328)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~----~g~--~~~ad~vV~~~~~  287 (328)
                      ..+.+.|.+.+++.|++|+++++|++|..+ ++++.+|..    +++  .+.|+.||++++-
T Consensus       155 ~~l~~~L~~~~~~~gv~i~~~~~v~~Li~~-~g~v~Gv~~~~~~~G~~~~i~A~~VVlATGG  215 (621)
T 2h88_A          155 HSLLHTLYGRSLRYDTSYFVEYFALDLLME-NGECRGVIALCIEDGTIHRFRAKNTVIATGG  215 (621)
T ss_dssp             HHHHHHHHHHHTTSCCEEEETEEEEEEEEE-TTEEEEEEEEETTTCCEEEEEEEEEEECCCC
T ss_pred             HHHHHHHHHHHHhCCCEEEEceEEEEEEEE-CCEEEEEEEEEcCCCcEEEEEcCeEEECCCc
Confidence            468889988888899999999999999988 788888765    344  5899998876554

>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A*

Probab=99.22  E-value=6.6e-10  Score=103.59  Aligned_cols=56  Identities=23%  Similarity=0.204  Sum_probs=45.6

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCcceeEEEecCC-CcEEEEEe---cCc--eEEcCEEEECCCCC
Q 020312          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEE-GKVVGVTS---EGE--TAKCKKVVCDPSYL  288 (328)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~-~~v~~v~~---~g~--~~~ad~vV~~~~~~  288 (328)
                      ..+.+.|.+.+++.|++|+++++|++|..+ + +++++|+.   +++  .+.||.||++.+-.
T Consensus       255 ~~l~~~L~~~~~~~gv~i~~~t~v~~l~~~-~~g~v~GV~~~~~~G~~~~i~A~~VVlAtGg~  316 (572)
T 1d4d_A          255 AHVAQVLWDNAVKRGTDIRLNSRVVRILED-ASGKVTGVLVKGEYTGYYVIKADAVVIAAGGF  316 (572)
T ss_dssp             HHHHHHHHHHHHHTTCEEESSEEEEEEEEC---CCEEEEEEEETTTEEEEEECSEEEECCCCC
T ss_pred             HHHHHHHHHHHHHcCCeEEecCEEEEEEEC-CCCeEEEEEEEeCCCcEEEEEcCEEEEeCCCC
Confidence            468888999999999999999999999988 6 88888765   343  58999999776643

>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6

Probab=99.21  E-value=8.7e-11  Score=99.81  Aligned_cols=41  Identities=24%  Similarity=0.333  Sum_probs=37.4

Q ss_pred             CcccEEEECCChhHHHHHHhhhhC-CCeEEEeccCCCCCCcc
Q 020312            3 EEYDVIVLGTGLKECILSGLLSVD-GLKVLHMDRNDYYGGES   43 (328)
Q Consensus         3 ~~~dvvIvG~G~aGl~aA~~L~~~-G~~V~vlE~~~~~GG~~   43 (328)
                      .++||+|||||++|++||+.|+++ |.+|+|+|+++.+||.+
T Consensus        38 ~~~dVvIIGgG~aGl~aA~~la~~~G~~V~viEk~~~~gg~~   79 (284)
T 1rp0_A           38 AETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGA   79 (284)
T ss_dssp             TEEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSCCTTT
T ss_pred             cccCEEEECccHHHHHHHHHHHHcCCCeEEEEECCCCCCCce
Confidence            357999999999999999999997 99999999999888753

>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}

Probab=99.19  E-value=2.3e-10  Score=106.63  Aligned_cols=56  Identities=18%  Similarity=0.105  Sum_probs=44.9

Q ss_pred             cHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe--cC--ceEEcCEEEECCCCCc
Q 020312          233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS--EG--ETAKCKKVVCDPSYLP  289 (328)
Q Consensus       233 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~--~g--~~~~ad~vV~~~~~~~  289 (328)
                      .+.+.|.+.+++.|++++++++|++|..+ ++.+++|++  +|  .+++||.||.+.+..+
T Consensus       129 ~l~~~L~~~a~~~Gv~i~~g~~V~~v~~~-~g~~~~V~~~~~G~~~~i~AdlVV~AdG~~S  188 (591)
T 3i3l_A          129 EFDKLLLDEARSRGITVHEETPVTDVDLS-DPDRVVLTVRRGGESVTVESDFVIDAGGSGG  188 (591)
T ss_dssp             HHHHHHHHHHHHTTCEEETTCCEEEEECC-STTCEEEEEEETTEEEEEEESEEEECCGGGC
T ss_pred             HHHHHHHHHHHhCCCEEEeCCEEEEEEEc-CCCEEEEEEecCCceEEEEcCEEEECCCCcc
Confidence            46667777888899999999999999987 666677766  45  4799999998877644

>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*

Probab=99.17  E-value=2.3e-10  Score=107.86  Aligned_cols=55  Identities=16%  Similarity=0.117  Sum_probs=45.0

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe----cCc--eEEcCEEEECCCC
Q 020312          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS----EGE--TAKCKKVVCDPSY  287 (328)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~----~g~--~~~ad~vV~~~~~  287 (328)
                      ..+...|.+.+++.|++|+.+++|++|..+ ++++.+|..    +++  .+.||.||++++-
T Consensus       158 ~~l~~~L~~~a~~~gv~i~~~~~v~~L~~~-~g~v~Gv~~~~~~~G~~~~i~A~~VVlATGG  218 (660)
T 2bs2_A          158 HTMLFAVANECLKLGVSIQDRKEAIALIHQ-DGKCYGAVVRDLVTGDIIAYVAKGTLIATGG  218 (660)
T ss_dssp             HHHHHHHHHHHHHHTCEEECSEEEEEEEEE-TTEEEEEEEEETTTCCEEEEECSEEEECCCC
T ss_pred             HHHHHHHHHHHHhCCCEEEECcEEEEEEec-CCEEEEEEEEECCCCcEEEEEcCEEEEccCc
Confidence            468889999888899999999999999987 788887764    344  4899998876554

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=99.13  E-value=2.3e-10  Score=102.63  Aligned_cols=58  Identities=19%  Similarity=0.185  Sum_probs=50.4

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe-cCceEEcCEEEECCCCCcc
Q 020312          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLPN  290 (328)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~-~g~~~~ad~vV~~~~~~~~  290 (328)
                      ..+.+.+.+.+++.|++++++++|++|..+ ++++.+|++ +|+++.||.||++++..|+
T Consensus       194 ~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~-~~~v~~v~l~dG~~i~aD~Vv~a~G~~p~  252 (415)
T 3lxd_A          194 EALSEFYQAEHRAHGVDLRTGAAMDCIEGD-GTKVTGVRMQDGSVIPADIVIVGIGIVPC  252 (415)
T ss_dssp             HHHHHHHHHHHHHTTCEEEETCCEEEEEES-SSBEEEEEESSSCEEECSEEEECSCCEES
T ss_pred             HHHHHHHHHHHHhCCCEEEECCEEEEEEec-CCcEEEEEeCCCCEEEcCEEEECCCCccC
Confidence            456777788889999999999999999987 788888888 7889999999999988665

>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}

Probab=99.13  E-value=6.2e-10  Score=102.04  Aligned_cols=41  Identities=29%  Similarity=0.453  Sum_probs=36.3

Q ss_pred             CCCcccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCC
Q 020312            1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG   41 (328)
Q Consensus         1 ~~~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG   41 (328)
                      +++++||+|||||++||++|+.|+++|.+|+|||+.+.++.
T Consensus         8 ~~~~~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~~~~~   48 (500)
T 2qa1_A            8 HRSDAAVIVVGAGPAGMMLAGELRLAGVEVVVLERLVERTG   48 (500)
T ss_dssp             CCSBCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCCC-CC
T ss_pred             ccCCCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCC
Confidence            35679999999999999999999999999999999876643

>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}

Probab=99.12  E-value=3e-10  Score=101.32  Aligned_cols=58  Identities=14%  Similarity=0.057  Sum_probs=46.7

Q ss_pred             CcHHHHHHHHHHHc-CcEEEcCcceeEEEecCCCcEE-EEEe-cCceEEcCEEEECCCCCcc
Q 020312          232 GELPQAFARLSAVY-GGTYMLNKPECKVEFDEEGKVV-GVTS-EGETAKCKKVVCDPSYLPN  290 (328)
Q Consensus       232 ~~l~~~l~~~~~~~-G~~i~~~~~V~~I~~~~~~~v~-~v~~-~g~~~~ad~vV~~~~~~~~  290 (328)
                      ..+.+.|.+.+++. |++++++++|++|+.+ ++.++ .|++ +|++++||.||.+.+..+.
T Consensus       107 ~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~-~~~v~g~v~~~~g~~~~ad~vV~AdG~~s~  167 (399)
T 2x3n_A          107 ESLRRLVLEKIDGEATVEMLFETRIEAVQRD-ERHAIDQVRLNDGRVLRPRVVVGADGIASY  167 (399)
T ss_dssp             HHHHHHHHHHHTTCTTEEEECSCCEEEEEEC-TTSCEEEEEETTSCEEEEEEEEECCCTTCH
T ss_pred             HHHHHHHHHHhhhcCCcEEEcCCEEEEEEEc-CCceEEEEEECCCCEEECCEEEECCCCChH
Confidence            45778888888888 9999999999999988 66653 5666 6778999999988776554

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*

Probab=99.12  E-value=2.8e-10  Score=101.81  Aligned_cols=53  Identities=17%  Similarity=0.153  Sum_probs=41.5

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe-cCceEEcCEEEECCCCC
Q 020312          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYL  288 (328)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~-~g~~~~ad~vV~~~~~~  288 (328)
                      ..+.+.|.+.+++  ++|+++++|++|+.+ ++.+. |++ +|++++||.||.+.+..
T Consensus       127 ~~l~~~L~~~~~~--~~i~~~~~v~~i~~~-~~~v~-v~~~~g~~~~a~~vV~AdG~~  180 (407)
T 3rp8_A          127 AELQREMLDYWGR--DSVQFGKRVTRCEED-ADGVT-VWFTDGSSASGDLLIAADGSH  180 (407)
T ss_dssp             HHHHHHHHHHHCG--GGEEESCCEEEEEEE-TTEEE-EEETTSCEEEESEEEECCCTT
T ss_pred             HHHHHHHHHhCCc--CEEEECCEEEEEEec-CCcEE-EEEcCCCEEeeCEEEECCCcC
Confidence            3566777777665  899999999999988 66644 555 78899999999877664

>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens}

Probab=99.11  E-value=6.4e-10  Score=103.04  Aligned_cols=57  Identities=9%  Similarity=0.018  Sum_probs=44.2

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCcceeEEEecCCC----cEEEEEecC---ceEEcCEEEECCCCCc
Q 020312          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEG----KVVGVTSEG---ETAKCKKVVCDPSYLP  289 (328)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~----~v~~v~~~g---~~~~ad~vV~~~~~~~  289 (328)
                      ..+.+.|.+.+++.|++++++++|++|+.+ ++    .++....++   .+++||.||.+.+..+
T Consensus       120 ~~l~~~L~~~a~~~gv~i~~~~~v~~i~~~-~~~~~~~v~v~~~~~~~~~~i~a~~vV~AdG~~S  183 (535)
T 3ihg_A          120 DKLEPILLAQARKHGGAIRFGTRLLSFRQH-DDDAGAGVTARLAGPDGEYDLRAGYLVGADGNRS  183 (535)
T ss_dssp             HHHHHHHHHHHHHTTCEEESSCEEEEEEEE-CGGGCSEEEEEEEETTEEEEEEEEEEEECCCTTC
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCEEEEEEEC-CCCccccEEEEEEcCCCeEEEEeCEEEECCCCcc
Confidence            457778888888899999999999999998 55    444333344   6799999998877654

>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*

Probab=99.10  E-value=3.3e-10  Score=104.73  Aligned_cols=39  Identities=21%  Similarity=0.336  Sum_probs=34.5

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCcc
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGES   43 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~   43 (328)
                      ++||+|||||++||+||+.|++ |.+|+||||.+..||.+
T Consensus         8 ~~DVvVVG~G~AGl~aAl~la~-G~~V~vlEk~~~~~g~s   46 (540)
T 1chu_A            8 SCDVLIIGSGAAGLSLALRLAD-QHQVIVLSKGPVTEGST   46 (540)
T ss_dssp             ECSEEEECCSHHHHHHHHHHTT-TSCEEEECSSCTTC---
T ss_pred             CCCEEEECccHHHHHHHHHHhc-CCcEEEEECCCCCCCCh
Confidence            5899999999999999999999 99999999998877654

>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}

Probab=99.10  E-value=3.8e-10  Score=103.94  Aligned_cols=57  Identities=21%  Similarity=0.191  Sum_probs=45.9

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe---cCc--eEEcCEEEECCCCCc
Q 020312          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS---EGE--TAKCKKVVCDPSYLP  289 (328)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~---~g~--~~~ad~vV~~~~~~~  289 (328)
                      ..+.+.|.+.+++.|++++++++|++|..+ ++++++|++   +|+  +++||.||.+.+..+
T Consensus       111 ~~l~~~L~~~a~~~Gv~i~~~~~V~~v~~~-~~~v~gv~~~~~dG~~~~i~ad~VI~AdG~~S  172 (512)
T 3e1t_A          111 ARFDDMLLRNSERKGVDVRERHEVIDVLFE-GERAVGVRYRNTEGVELMAHARFIVDASGNRT  172 (512)
T ss_dssp             HHHHHHHHHHHHHTTCEEESSCEEEEEEEE-TTEEEEEEEECSSSCEEEEEEEEEEECCCTTC
T ss_pred             HHHHHHHHHHHHhCCCEEEcCCEEEEEEEE-CCEEEEEEEEeCCCCEEEEEcCEEEECCCcch
Confidence            356777888888899999999999999998 788776664   453  799999998776643

>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A*

Probab=99.09  E-value=4.3e-10  Score=102.04  Aligned_cols=54  Identities=24%  Similarity=0.168  Sum_probs=42.7

Q ss_pred             cHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe----cCc--eEEcCEEEECCCC
Q 020312          233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS----EGE--TAKCKKVVCDPSY  287 (328)
Q Consensus       233 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~----~g~--~~~ad~vV~~~~~  287 (328)
                      .+.+.|.+.+++.|++++++++|++|..+ ++.+++|++    +|+  +++||.||.+.+.
T Consensus       101 ~l~~~L~~~a~~~gv~i~~~~~v~~i~~~-~~~v~gv~~~~~~~G~~~~~~ad~VV~AdG~  160 (453)
T 3atr_A          101 LYNQRVLKEAQDRGVEIWDLTTAMKPIFE-DGYVKGAVLFNRRTNEELTVYSKVVVEATGY  160 (453)
T ss_dssp             HHHHHHHHHHHHTTCEEESSEEEEEEEEE-TTEEEEEEEEETTTTEEEEEECSEEEECCGG
T ss_pred             HHHHHHHHHHHHcCCEEEeCcEEEEEEEE-CCEEEEEEEEEcCCCceEEEEcCEEEECcCC
Confidence            35566777778889999999999999988 777766654    444  7999999977665

>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A*

Probab=99.09  E-value=1.1e-09  Score=101.49  Aligned_cols=56  Identities=13%  Similarity=0.185  Sum_probs=45.5

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe-cCceEEcCEEEECCCCC
Q 020312          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYL  288 (328)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~-~g~~~~ad~vV~~~~~~  288 (328)
                      ..+.+.|.+.+++.|++++.+ +|++|..++++.++.|++ +|++++||.||.+.+..
T Consensus       165 ~~l~~~L~~~a~~~gv~~~~~-~v~~i~~~~~g~~~~v~~~~g~~i~ad~vV~A~G~~  221 (538)
T 2aqj_A          165 HLVADFLKRWAVERGVNRVVD-EVVDVRLNNRGYISNLLTKEGRTLEADLFIDCSGMR  221 (538)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEC-CEEEEEECTTSCEEEEEETTSCEECCSEEEECCGGG
T ss_pred             HHHHHHHHHHHHHCCCEEEEe-eEeEEEEcCCCcEEEEEECCCcEEEeCEEEECCCCc
Confidence            457788888888899999999 899999864556677777 66689999999876653

>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A*

Probab=99.08  E-value=1.2e-10  Score=108.87  Aligned_cols=55  Identities=16%  Similarity=0.168  Sum_probs=44.7

Q ss_pred             CcHHHHHHHHHHHcC-cEEEcCcceeEEEecCCCcEEEEEe----cCc--eEEcCEEEECCCC
Q 020312          232 GELPQAFARLSAVYG-GTYMLNKPECKVEFDEEGKVVGVTS----EGE--TAKCKKVVCDPSY  287 (328)
Q Consensus       232 ~~l~~~l~~~~~~~G-~~i~~~~~V~~I~~~~~~~v~~v~~----~g~--~~~ad~vV~~~~~  287 (328)
                      ..+.+.|.+.+++.| ++|+++++|++|..+ ++++++|..    +|+  .+.||.||++.+-
T Consensus       134 ~~l~~~L~~~~~~~gnv~i~~~~~v~~l~~~-~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg  195 (602)
T 1kf6_A          134 FHMLHTLFQTSLQFPQIQRFDEHFVLDILVD-DGHVRGLVAMNMMEGTLVQIRANAVVMATGG  195 (602)
T ss_dssp             HHHHHHHHHHHTTCTTEEEEETEEEEEEEEE-TTEEEEEEEEETTTTEEEEEECSCEEECCCC
T ss_pred             HHHHHHHHHHHHhCCCcEEEeCCEEEEEEEe-CCEEEEEEEEEcCCCcEEEEEcCeEEECCCC
Confidence            467888888888888 999999999999998 788777653    455  6899998876654

>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}

Probab=99.07  E-value=5.6e-11  Score=105.60  Aligned_cols=40  Identities=30%  Similarity=0.449  Sum_probs=37.2

Q ss_pred             CCcccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCC
Q 020312            2 DEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG   41 (328)
Q Consensus         2 ~~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG   41 (328)
                      |++|||+|||||++||+||+.|+++|++|+|+||++.+|.
T Consensus         2 Me~yDViIVGaGpaGl~~A~~La~~G~~V~v~Er~~~~~~   41 (397)
T 3oz2_A            2 METYDVLVVGGGPGGSTAARYAAKYGLKTLMIEKRPEIGS   41 (397)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSTTC
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCC
Confidence            4579999999999999999999999999999999887765

>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*

Probab=99.07  E-value=1.3e-09  Score=101.79  Aligned_cols=57  Identities=16%  Similarity=0.232  Sum_probs=45.8

Q ss_pred             cHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEec----------------CceEEcCEEEECCCCCc
Q 020312          233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSE----------------GETAKCKKVVCDPSYLP  289 (328)
Q Consensus       233 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~~----------------g~~~~ad~vV~~~~~~~  289 (328)
                      .+.+.|.+.+++.|++|+++++|++|..++++.+++|.+.                +.+++||.||.+.+..+
T Consensus       145 ~l~~~L~~~a~~~Gv~i~~g~~v~~l~~~~~g~V~gV~~~~~g~~~~G~~~~~~~~g~~i~Ad~VV~AdG~~S  217 (584)
T 2gmh_A          145 HLVSWMGEQAEALGVEVYPGYAAAEILFHEDGSVKGIATNDVGIQKDGAPKTTFERGLELHAKVTIFAEGCHG  217 (584)
T ss_dssp             HHHHHHHHHHHHTTCEEETTCCEEEEEECTTSSEEEEEECCEEECTTSCEEEEEECCCEEECSEEEECCCTTC
T ss_pred             HHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCCCEEEEEeCCccccCCCCcccccCCceEEECCEEEEeeCCCc
Confidence            5667777888889999999999999998744678777763                25799999998877654

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=99.06  E-value=1e-09  Score=101.64  Aligned_cols=40  Identities=28%  Similarity=0.423  Sum_probs=37.8

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCcc
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGES   43 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~   43 (328)
                      ++||+|||||++|+++|..|++.|.+|+|+|+++.+||..
T Consensus        21 ~~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~GGtw   60 (549)
T 4ap3_A           21 SYDVVVVGAGIAGLYAIHRFRSQGLTVRAFEAASGVGGVW   60 (549)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHH
T ss_pred             CCCEEEECchHHHHHHHHHHHhCCCCEEEEeCCCCCCCcc
Confidence            5899999999999999999999999999999999999854

>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}

Probab=99.05  E-value=2.5e-09  Score=98.03  Aligned_cols=38  Identities=26%  Similarity=0.453  Sum_probs=34.9

Q ss_pred             CcccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCC
Q 020312            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYG   40 (328)
Q Consensus         3 ~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~G   40 (328)
                      +++||+|||||++||++|..|+++|.+|+|||+.+.++
T Consensus        11 ~~~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~~~~   48 (499)
T 2qa2_A           11 SDASVIVVGAGPAGLMLAGELRLGGVDVMVLEQLPQRT   48 (499)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCSSCC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCC
Confidence            46899999999999999999999999999999987654

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=99.05  E-value=1.2e-09  Score=97.69  Aligned_cols=58  Identities=22%  Similarity=0.331  Sum_probs=50.3

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe-cCceEEcCEEEECCCCCcc
Q 020312          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLPN  290 (328)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~-~g~~~~ad~vV~~~~~~~~  290 (328)
                      ..+.+.+.+.+++.|++++++++|++|..+ ++++.+|++ +|+++.||.||++++..|+
T Consensus       184 ~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~-~~~v~~V~~~dG~~i~aD~Vv~a~G~~p~  242 (404)
T 3fg2_P          184 PEISSYFHDRHSGAGIRMHYGVRATEIAAE-GDRVTGVVLSDGNTLPCDLVVVGVGVIPN  242 (404)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEEE-TTEEEEEEETTSCEEECSEEEECCCEEEC
T ss_pred             HHHHHHHHHHHHhCCcEEEECCEEEEEEec-CCcEEEEEeCCCCEEEcCEEEECcCCccC
Confidence            457777888889999999999999999987 788888887 7889999999999887655

>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus}

Probab=99.03  E-value=5.2e-10  Score=104.04  Aligned_cols=57  Identities=11%  Similarity=-0.009  Sum_probs=43.2

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEE-e-cC-ceEEcCEEEECCCCCc
Q 020312          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVT-S-EG-ETAKCKKVVCDPSYLP  289 (328)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~-~-~g-~~~~ad~vV~~~~~~~  289 (328)
                      ..+.+.|.+.+++.|++|+++++|++|+.+ ++.++... . +| ++++||.||.+-+..+
T Consensus       148 ~~l~~~L~~~a~~~gv~i~~~~~v~~l~~~-~~~v~v~~~~~~G~~~~~a~~vV~ADG~~S  207 (570)
T 3fmw_A          148 SRTEALLAEHAREAGAEIPRGHEVTRLRQD-AEAVEVTVAGPSGPYPVRARYGVGCDGGRS  207 (570)
T ss_dssp             HHHHHHHHHHHHHHTEECCBSCEEEECCBC-SSCEEEEEEETTEEEEEEESEEEECSCSSC
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCEEEEEEEc-CCeEEEEEEeCCCcEEEEeCEEEEcCCCCc
Confidence            346777778888889999999999999988 55544322 2 55 5899999998776543

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=99.03  E-value=1e-09  Score=101.32  Aligned_cols=40  Identities=28%  Similarity=0.371  Sum_probs=37.6

Q ss_pred             cccEEEECCChhHHHHHHhhh-hCCCeEEEeccCCCCCCcc
Q 020312            4 EYDVIVLGTGLKECILSGLLS-VDGLKVLHMDRNDYYGGES   43 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~-~~G~~V~vlE~~~~~GG~~   43 (328)
                      ++||+|||||++|+++|+.|+ +.|.+|+|+|+++.+||..
T Consensus         8 ~~dVvIIGaG~aGl~aA~~L~~~~G~~v~viE~~~~~GGtw   48 (540)
T 3gwf_A            8 TVDAVVIGAGFGGIYAVHKLHHELGLTTVGFDKADGPGGTW   48 (540)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSSCTHH
T ss_pred             CCCEEEECcCHHHHHHHHHHHHcCCCCEEEEECCCCCCCcc
Confidence            489999999999999999999 9999999999999999854

>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A*

Probab=99.01  E-value=7.5e-10  Score=102.69  Aligned_cols=35  Identities=23%  Similarity=0.387  Sum_probs=32.3

Q ss_pred             CcccEEEECCChhHHHHHHhhhhC-CCeEEEeccCC
Q 020312            3 EEYDVIVLGTGLKECILSGLLSVD-GLKVLHMDRND   37 (328)
Q Consensus         3 ~~~dvvIvG~G~aGl~aA~~L~~~-G~~V~vlE~~~   37 (328)
                      ++||+||||||.+|+++|.+|++. |.+|+|||+..
T Consensus        18 ~~yDyIIVGgG~AG~vlA~RLse~~~~~VLlLEaG~   53 (583)
T 3qvp_A           18 RTVDYIIAGGGLTGLTTAARLTENPNISVLVIESGS   53 (583)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHTTSTTCCEEEECSSC
T ss_pred             CCccEEEECCcHHHHHHHHHHHhCCCCcEEEEecCC
Confidence            469999999999999999999975 79999999976

>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*

Probab=99.00  E-value=5e-09  Score=98.91  Aligned_cols=54  Identities=17%  Similarity=0.126  Sum_probs=43.0

Q ss_pred             CcHHHHHHHHHHHc-Cc-EEEcCcceeEEEecCCC---cEEEEEe----cCc--eEEcCEEEECCC
Q 020312          232 GELPQAFARLSAVY-GG-TYMLNKPECKVEFDEEG---KVVGVTS----EGE--TAKCKKVVCDPS  286 (328)
Q Consensus       232 ~~l~~~l~~~~~~~-G~-~i~~~~~V~~I~~~~~~---~v~~v~~----~g~--~~~ad~vV~~~~  286 (328)
                      ..+...+.+.+++. |+ +|+++++|++|..+ ++   ++++|..    +++  .+.|+.||++.+
T Consensus       151 ~~~~~~l~~~~~~~~gv~~i~~~~~v~~L~~~-~~~~g~v~Gv~~~~~~~g~~~~i~A~~VVlAtG  215 (643)
T 1jnr_A          151 ESYKPIIAEAAKMAVGEENIYERVFIFELLKD-NNDPNAVAGAVGFSVREPKFYVFKAKAVILATG  215 (643)
T ss_dssp             TTHHHHHHHHHHHHHCGGGEECSEEEEEEEEC-TTCTTBEEEEEEEESSSSCEEEEECSEEEECCC
T ss_pred             HHHHHHHHHHHHhcCCCcEEEecCEEEEEEEc-CCccceeEEEEEEEecCCcEEEEEcCEEEECCC
Confidence            45777888888887 99 99999999999987 56   8888763    444  589999887554

>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii}

Probab=99.00  E-value=4.3e-09  Score=95.78  Aligned_cols=55  Identities=18%  Similarity=0.262  Sum_probs=43.9

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe--cCceEEcCEEEECCCCC
Q 020312          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS--EGETAKCKKVVCDPSYL  288 (328)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~--~g~~~~ad~vV~~~~~~  288 (328)
                      ..+.+.|.+.+++.|++++++++| +|..+ ++++.++..  +++.+.||.||.+.+-.
T Consensus       119 ~~l~~~L~~~~~~~gv~i~~~~~v-~l~~~-~~~v~Gv~v~~~~g~~~a~~VVlAtGg~  175 (472)
T 2e5v_A          119 REIFNFLLKLAREEGIPIIEDRLV-EIRVK-DGKVTGFVTEKRGLVEDVDKLVLATGGY  175 (472)
T ss_dssp             HHHHHHHHHHHHHTTCCEECCCEE-EEEEE-TTEEEEEEETTTEEECCCSEEEECCCCC
T ss_pred             HHHHHHHHHHHHhCCCEEEECcEE-EEEEe-CCEEEEEEEEeCCCeEEeeeEEECCCCC
Confidence            457788888888889999999999 99988 788877765  34468899998776543

>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti}

Probab=99.00  E-value=1.5e-09  Score=100.27  Aligned_cols=36  Identities=22%  Similarity=0.423  Sum_probs=32.1

Q ss_pred             CcccEEEECCChhHHHHHHhhhh-CCCeEEEeccCCC
Q 020312            3 EEYDVIVLGTGLKECILSGLLSV-DGLKVLHMDRNDY   38 (328)
Q Consensus         3 ~~~dvvIvG~G~aGl~aA~~L~~-~G~~V~vlE~~~~   38 (328)
                      ++||+||||||.+|+.+|.+|++ .|++|+|||++..
T Consensus        16 ~~yD~IIVGsG~aG~v~A~rLse~~~~~VLvLEaG~~   52 (526)
T 3t37_A           16 PNCDIVIVGGGSAGSLLAARLSEDPDSRVLLIEAGEE   52 (526)
T ss_dssp             -CEEEEEECCSHHHHHHHHHHTTSTTSCEEEECSSBC
T ss_pred             CCeeEEEECccHHHHHHHHHHHhCCCCeEEEEcCCCC
Confidence            46999999999999999999998 6799999999643

>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A

Probab=98.99  E-value=8e-09  Score=95.92  Aligned_cols=57  Identities=14%  Similarity=0.139  Sum_probs=46.5

Q ss_pred             CcHHHHHHHHHHHc-CcEEEcCcceeEEEecCCCcEEEEEe-cCceEEcCEEEECCCCCc
Q 020312          232 GELPQAFARLSAVY-GGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLP  289 (328)
Q Consensus       232 ~~l~~~l~~~~~~~-G~~i~~~~~V~~I~~~~~~~v~~v~~-~g~~~~ad~vV~~~~~~~  289 (328)
                      ..+.+.|.+.+++. |++++++ +|++|..++++.+++|++ +|++++||.||.+.+..+
T Consensus       194 ~~l~~~L~~~~~~~~Gv~i~~~-~V~~i~~~~~g~~~~v~~~~G~~i~ad~vI~A~G~~S  252 (550)
T 2e4g_A          194 HLVADFLRRFATEKLGVRHVED-RVEHVQRDANGNIESVRTATGRVFDADLFVDCSGFRG  252 (550)
T ss_dssp             HHHHHHHHHHHHHHSCCEEEEC-CEEEEEECTTSCEEEEEETTSCEEECSEEEECCGGGC
T ss_pred             HHHHHHHHHHHHhcCCcEEEEC-eEeEEEEcCCCCEEEEEECCCCEEECCEEEECCCCch
Confidence            35788888888888 9999999 999999864566777877 677899999998776533

>3fpz_A Thiazole biosynthetic enzyme; FAD, mitochondrion, N thiamine biosynthesis, transit peptide, biosynthetic protei; HET: AHZ; 1.82A {Saccharomyces cerevisiae}

Probab=98.98  E-value=2.4e-10  Score=99.10  Aligned_cols=42  Identities=26%  Similarity=0.271  Sum_probs=38.5

Q ss_pred             cccEEEECCChhHHHHHHhhhh--CCCeEEEeccCCCCCCcccc
Q 020312            4 EYDVIVLGTGLKECILSGLLSV--DGLKVLHMDRNDYYGGESSS   45 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~--~G~~V~vlE~~~~~GG~~~s   45 (328)
                      ++||+|||||++||+||++|++  +|++|+|+|+++.+||.+..
T Consensus        65 ~~DV~IIGaGPAGlsAA~~la~~r~G~~V~viEk~~~~GG~~~~  108 (326)
T 3fpz_A           65 VSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWL  108 (326)
T ss_dssp             EESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTTTTC
T ss_pred             CCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEECCCCCCceEEe
Confidence            5899999999999999999985  59999999999999997754

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=98.97  E-value=6.7e-09  Score=94.65  Aligned_cols=58  Identities=19%  Similarity=0.174  Sum_probs=47.3

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEecCceEEcCEEEECCCCCcc
Q 020312          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPN  290 (328)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~~g~~~~ad~vV~~~~~~~~  290 (328)
                      ..+.+.+.+.+++.|++++++++|++|..+ ++++..+..+++++.||.||++++..|+
T Consensus       202 ~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~-~~~v~v~~~~g~~i~aD~Vv~a~G~~p~  259 (472)
T 3iwa_A          202 KSLSQMLRHDLEKNDVVVHTGEKVVRLEGE-NGKVARVITDKRTLDADLVILAAGVSPN  259 (472)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEES-SSBEEEEEESSCEEECSEEEECSCEEEC
T ss_pred             HHHHHHHHHHHHhcCCEEEeCCEEEEEEcc-CCeEEEEEeCCCEEEcCEEEECCCCCcC
Confidence            456777888889999999999999999986 6776533347889999999999887654

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=98.96  E-value=1.9e-09  Score=97.73  Aligned_cols=57  Identities=7%  Similarity=0.117  Sum_probs=46.4

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEecCceEEcCEEEECCCCCcc
Q 020312          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPN  290 (328)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~~g~~~~ad~vV~~~~~~~~  290 (328)
                      ..+.+.+.+.+++.|++++++++|++|..+ ++++ .|+++++++.||.||++++..|+
T Consensus       189 ~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~-~~~v-~v~~~~g~i~aD~Vv~A~G~~p~  245 (452)
T 3oc4_A          189 KEMVAEVQKSLEKQAVIFHFEETVLGIEET-ANGI-VLETSEQEISCDSGIFALNLHPQ  245 (452)
T ss_dssp             HHHHHHHHHHHHTTTEEEEETCCEEEEEEC-SSCE-EEEESSCEEEESEEEECSCCBCC
T ss_pred             HHHHHHHHHHHHHcCCEEEeCCEEEEEEcc-CCeE-EEEECCCEEEeCEEEECcCCCCC
Confidence            346777888889999999999999999976 6666 66675559999999998887554

>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*

Probab=98.94  E-value=3.7e-09  Score=97.94  Aligned_cols=54  Identities=17%  Similarity=0.160  Sum_probs=44.1

Q ss_pred             cHHHHHHHHHHH-cCcEEEcCcceeEEEecCCCcEEEEEe-cCceEEcCEEEECCCCC
Q 020312          233 ELPQAFARLSAV-YGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYL  288 (328)
Q Consensus       233 ~l~~~l~~~~~~-~G~~i~~~~~V~~I~~~~~~~v~~v~~-~g~~~~ad~vV~~~~~~  288 (328)
                      .+.+.+.+.+++ .|+++ ++++|++|..+ ++++++|.+ +|..+.||.||++.+..
T Consensus       124 ~~~~~L~~~Le~~~GVeI-~~~~Vt~L~~e-~g~V~GV~t~dG~~i~AdaVVLATG~~  179 (637)
T 2zxi_A          124 RYREYMKKVCENQENLYI-KQEEVVDIIVK-NNQVVGVRTNLGVEYKTKAVVVTTGTF  179 (637)
T ss_dssp             HHHHHHHHHHHTCTTEEE-EESCEEEEEES-SSBEEEEEETTSCEEECSEEEECCTTC
T ss_pred             HHHHHHHHHHHhCCCCEE-EEeEEEEEEec-CCEEEEEEECCCcEEEeCEEEEccCCC
Confidence            466777777777 59999 57899999988 888888988 77789999999877653

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=98.93  E-value=5.3e-10  Score=96.26  Aligned_cols=43  Identities=26%  Similarity=0.481  Sum_probs=37.0

Q ss_pred             CCC-cccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCccc
Q 020312            1 MDE-EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (328)
Q Consensus         1 ~~~-~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~   44 (328)
                      |.+ +|||+|||||++|++||.+|+++|++|+|+|+. .+||.+.
T Consensus         2 Mte~~yDvvIIG~GpAGl~aA~~l~~~g~~V~liE~~-~~gG~~~   45 (312)
T 4gcm_A            2 MTEIDFDIAIIGAGPAGMTAAVYASRANLKTVMIERG-IPGGQMA   45 (312)
T ss_dssp             --CCSEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTGGGG
T ss_pred             CCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEecC-CCCCeee
Confidence            554 699999999999999999999999999999984 6777664

>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A

Probab=98.92  E-value=1.7e-08  Score=93.81  Aligned_cols=54  Identities=17%  Similarity=0.108  Sum_probs=43.7

Q ss_pred             cHHHHHHHHHHH-cCcEEEcCcceeEEEecCCCcEEEEEe-cCceEEcCEEEECCCCC
Q 020312          233 ELPQAFARLSAV-YGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYL  288 (328)
Q Consensus       233 ~l~~~l~~~~~~-~G~~i~~~~~V~~I~~~~~~~v~~v~~-~g~~~~ad~vV~~~~~~  288 (328)
                      .+.+.+.+.+++ .|+++ ++++|++|..+ ++++++|.+ +|..+.||.||.+.+..
T Consensus       125 ~~~~~L~e~Le~~~GV~I-~~~~V~~L~~e-~g~V~GV~t~dG~~I~Ad~VVLATGt~  180 (651)
T 3ces_A          125 LYRQAVRTALENQPNLMI-FQQAVEDLIVE-NDRVVGAVTQMGLKFRAKAVVLTVGTF  180 (651)
T ss_dssp             HHHHHHHHHHHTCTTEEE-EECCEEEEEES-SSBEEEEEETTSEEEEEEEEEECCSTT
T ss_pred             HHHHHHHHHHHhCCCCEE-EEEEEEEEEec-CCEEEEEEECCCCEEECCEEEEcCCCC
Confidence            466777777777 69999 57899999988 788888888 67789999999876653

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*

Probab=98.92  E-value=6.2e-10  Score=95.48  Aligned_cols=40  Identities=20%  Similarity=0.157  Sum_probs=34.7

Q ss_pred             CCcccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCc
Q 020312            2 DEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGE   42 (328)
Q Consensus         2 ~~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~   42 (328)
                      |++|||+|||||++||+||++|+++|++|+|+|++. +||.
T Consensus         4 M~~yDVvIIGaGpAGlsAA~~lar~g~~v~lie~~~-~gg~   43 (304)
T 4fk1_A            4 MKYIDCAVIGAGPAGLNASLVLGRARKQIALFDNNT-NRNR   43 (304)
T ss_dssp             --CEEEEEECCSHHHHHHHHHHHHTTCCEEEEECSC-CGGG
T ss_pred             CCCcCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCC-CCCe
Confidence            668999999999999999999999999999999965 4553

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=98.92  E-value=3.6e-09  Score=94.67  Aligned_cols=56  Identities=11%  Similarity=0.044  Sum_probs=46.2

Q ss_pred             cHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe-cCceEEcCEEEECCCCCcc
Q 020312          233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLPN  290 (328)
Q Consensus       233 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~-~g~~~~ad~vV~~~~~~~~  290 (328)
                      .+.+.+.+.+++.|++++++++|++|..+ + ++..|++ +|+++.||.||++++..|+
T Consensus       186 ~~~~~l~~~l~~~GV~i~~~~~v~~i~~~-~-~~~~v~~~dg~~i~aD~Vv~a~G~~p~  242 (410)
T 3ef6_A          186 RIGAWLRGLLTELGVQVELGTGVVGFSGE-G-QLEQVMASDGRSFVADSALICVGAEPA  242 (410)
T ss_dssp             HHHHHHHHHHHHHTCEEECSCCEEEEECS-S-SCCEEEETTSCEEECSEEEECSCEEEC
T ss_pred             HHHHHHHHHHHHCCCEEEeCCEEEEEecc-C-cEEEEEECCCCEEEcCEEEEeeCCeec
Confidence            45667777888999999999999999865 3 5566777 8889999999999888665

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=98.89  E-value=6.8e-08  Score=86.87  Aligned_cols=57  Identities=21%  Similarity=0.338  Sum_probs=47.7

Q ss_pred             cHHHHHHHHHHHcCcEEEcCcceeEEEe--cCCCcEEEEEe-cCceEEcCEEEECCCCCcc
Q 020312          233 ELPQAFARLSAVYGGTYMLNKPECKVEF--DEEGKVVGVTS-EGETAKCKKVVCDPSYLPN  290 (328)
Q Consensus       233 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~--~~~~~v~~v~~-~g~~~~ad~vV~~~~~~~~  290 (328)
                      .+.+.+.+.+++.|++++++++|++|..  + ++++..|++ +|+++.||.||++++..|+
T Consensus       192 ~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~-~~~v~~v~~~~G~~i~~D~Vv~a~G~~p~  251 (431)
T 1q1r_A          192 PVSAFYEHLHREAGVDIRTGTQVCGFEMSTD-QQKVTAVLCEDGTRLPADLVIAGIGLIPN  251 (431)
T ss_dssp             HHHHHHHHHHHHHTCEEECSCCEEEEEECTT-TCCEEEEEETTSCEEECSEEEECCCEEEC
T ss_pred             HHHHHHHHHHHhCCeEEEeCCEEEEEEeccC-CCcEEEEEeCCCCEEEcCEEEECCCCCcC
Confidence            4667777888899999999999999997  5 677777777 7788999999998887654

>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A*

Probab=98.89  E-value=3e-09  Score=98.29  Aligned_cols=38  Identities=32%  Similarity=0.538  Sum_probs=34.1

Q ss_pred             CcccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCC
Q 020312            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG   41 (328)
Q Consensus         3 ~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG   41 (328)
                      .+||+||||||.+|+++|.+|++ |.+|+|||++...++
T Consensus        25 ~~yD~IIVGsG~AG~v~A~rLse-g~~VlvLEaG~~~~~   62 (536)
T 1ju2_A           25 GSYDYVIVGGGTSGCPLAATLSE-KYKVLVLERGSLPTA   62 (536)
T ss_dssp             EEEEEEEECCSTTHHHHHHHHTT-TSCEEEECSSBCGGG
T ss_pred             CcccEEEECccHHHHHHHHHHhc-CCcEEEEecCCCcCC
Confidence            35999999999999999999999 999999999766543

>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*

Probab=98.88  E-value=1.2e-08  Score=93.55  Aligned_cols=38  Identities=18%  Similarity=0.344  Sum_probs=35.1

Q ss_pred             CcccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCC
Q 020312            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYG   40 (328)
Q Consensus         3 ~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~G   40 (328)
                      .++|++|||+|.+|+++|.+|++.|.+|+|||++...+
T Consensus         4 ~~~d~~iiG~G~~g~~~a~~l~~~~~~v~~~e~~~~~~   41 (504)
T 1n4w_A            4 GYVPAVVIGTGYGAAVSALRLGEAGVQTLMLEMGQLWN   41 (504)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCCCC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCC
Confidence            46999999999999999999999999999999987654

>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A*

Probab=98.88  E-value=1.1e-08  Score=94.04  Aligned_cols=37  Identities=14%  Similarity=0.269  Sum_probs=34.1

Q ss_pred             CCcccEEEECCChhHHHHHHhhhhCCCeEEEeccCCC
Q 020312            2 DEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (328)
Q Consensus         2 ~~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~   38 (328)
                      +.++|++|||||.+|+++|.+|++.|.+|+|||++..
T Consensus         9 ~~~~d~~iiG~G~~g~~~a~~l~~~~~~v~~~e~~~~   45 (507)
T 1coy_A            9 GDRVPALVIGSGYGGAVAALRLTQAGIPTQIVEMGRS   45 (507)
T ss_dssp             TCEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCC
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHHCCCcEEEEECCCC
Confidence            4569999999999999999999999999999999754

>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A*

Probab=98.87  E-value=1.6e-09  Score=95.28  Aligned_cols=41  Identities=24%  Similarity=0.260  Sum_probs=36.6

Q ss_pred             CCCcccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCC
Q 020312            1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG   41 (328)
Q Consensus         1 ~~~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG   41 (328)
                      |..++||+|||||++|+++|++|+++|.+|+|||+....+|
T Consensus         3 m~~~~dVvVIG~Gi~Gls~A~~La~~G~~V~vle~~~~~~g   43 (363)
T 1c0p_A            3 MHSQKRVVVLGSGVIGLSSALILARKGYSVHILARDLPEDV   43 (363)
T ss_dssp             CCCSCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCTTCT
T ss_pred             CCCCCCEEEECCCHHHHHHHHHHHhCCCEEEEEeccCCCCc
Confidence            44579999999999999999999999999999999875444

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=98.86  E-value=1.1e-09  Score=94.14  Aligned_cols=38  Identities=21%  Similarity=0.228  Sum_probs=34.9

Q ss_pred             CCCcccEEEECCChhHHHHHHhhhhCCCeEEEeccCCC
Q 020312            1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (328)
Q Consensus         1 ~~~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~   38 (328)
                      |.+.|||+|||||++||+||.+|+++|++|+|+|+...
T Consensus         1 M~~~yDvvIIG~GpAGl~AA~~la~~g~~v~liE~~~~   38 (314)
T 4a5l_A            1 MSNIHDVVIIGSGPAAHTAAIYLGRSSLKPVMYEGFMA   38 (314)
T ss_dssp             -CCCEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSG
T ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Confidence            77779999999999999999999999999999999764

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=98.84  E-value=8.3e-09  Score=93.51  Aligned_cols=58  Identities=17%  Similarity=0.220  Sum_probs=48.0

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEecCceEEcCEEEECCCCCcc
Q 020312          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPN  290 (328)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~~g~~~~ad~vV~~~~~~~~  290 (328)
                      ..+.+.+.+.+++.|++++++++|++|..+ ++++..+.++++++.||.||++++..|+
T Consensus       191 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~-~~~v~~v~~~g~~i~~D~vv~a~G~~p~  248 (452)
T 2cdu_A          191 KEFTDILAKDYEAHGVNLVLGSKVAAFEEV-DDEIITKTLDGKEIKSDIAILCIGFRPN  248 (452)
T ss_dssp             HHHHHHHHHHHHHTTCEEEESSCEEEEEEE-TTEEEEEETTSCEEEESEEEECCCEEEC
T ss_pred             hhHHHHHHHHHHHCCCEEEcCCeeEEEEcC-CCeEEEEEeCCCEEECCEEEECcCCCCC
Confidence            346777888889999999999999999975 6677667778889999999998877554

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=98.81  E-value=1.6e-09  Score=98.58  Aligned_cols=45  Identities=29%  Similarity=0.324  Sum_probs=41.1

Q ss_pred             CCCcccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCcccc
Q 020312            1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSS   45 (328)
Q Consensus         1 ~~~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~s   45 (328)
                      |+.++||+|||||++|++||..|+++|++|+|+|+++.+||.+..
T Consensus         1 M~~~~DVvVIGgG~aGl~aA~~l~~~G~~V~liEk~~~~GG~~~~   45 (466)
T 3l8k_A            1 MSLKYDVVVIGAGGAGYHGAFRLAKAKYNVLMADPKGELGGNCLY   45 (466)
T ss_dssp             -CEEEEEEEECCSHHHHHHHHHHHHTTCCEEEECTTSSSSHHHHH
T ss_pred             CCccceEEEECCCHHHHHHHHHHHhCCCeEEEEECCCCCCCcccc
Confidence            677899999999999999999999999999999999999997653

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=98.78  E-value=2.7e-09  Score=97.80  Aligned_cols=44  Identities=27%  Similarity=0.444  Sum_probs=38.7

Q ss_pred             CCcccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCcccc
Q 020312            2 DEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSS   45 (328)
Q Consensus         2 ~~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~s   45 (328)
                      +.++||+|||||++|++||..|+++|++|+|+|+++.+||.+..
T Consensus        23 m~~~dVvVIGgG~aGl~aA~~la~~G~~V~liEk~~~~GG~~~~   66 (491)
T 3urh_A           23 MMAYDLIVIGSGPGGYVCAIKAAQLGMKVAVVEKRSTYGGTCLN   66 (491)
T ss_dssp             ---CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHH
T ss_pred             cccCCEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCcccc
Confidence            34699999999999999999999999999999999999997543

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=98.78  E-value=2.7e-09  Score=93.67  Aligned_cols=44  Identities=11%  Similarity=0.212  Sum_probs=39.3

Q ss_pred             CCCcccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCccc
Q 020312            1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (328)
Q Consensus         1 ~~~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~   44 (328)
                      |+..+||+|||||++|++||+.|+++|++|+|+|+++.+||.+.
T Consensus        11 ~~~~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~   54 (360)
T 3ab1_A           11 HHDMRDLTIIGGGPTGIFAAFQCGMNNISCRIIESMPQLGGQLA   54 (360)
T ss_dssp             --CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHH
T ss_pred             cCCCCCEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCCCccc
Confidence            45578999999999999999999999999999999999998654

>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A*

Probab=98.78  E-value=1.4e-08  Score=93.93  Aligned_cols=38  Identities=26%  Similarity=0.353  Sum_probs=34.3

Q ss_pred             CcccEEEECCChhHHHHHHhhhhC-CCeEEEeccCCCCC
Q 020312            3 EEYDVIVLGTGLKECILSGLLSVD-GLKVLHMDRNDYYG   40 (328)
Q Consensus         3 ~~~dvvIvG~G~aGl~aA~~L~~~-G~~V~vlE~~~~~G   40 (328)
                      .++|++|||||.+|+++|++|+++ |.+|+|||++....
T Consensus        12 ~~~d~~ivG~G~~G~~~a~~l~~~~~~~v~~~e~g~~~~   50 (546)
T 2jbv_A           12 REFDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGPDDR   50 (546)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHTTSTTSCEEEECSSCCCT
T ss_pred             CcCCEEEECcCHHHHHHHHHHHhCCCCCEEEEecCCcCC
Confidence            359999999999999999999998 89999999976543

>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*

Probab=98.78  E-value=4.5e-09  Score=94.05  Aligned_cols=41  Identities=20%  Similarity=0.297  Sum_probs=35.7

Q ss_pred             CCCcccEEEECCChhHHHHHHhhhhCCCe-EEEeccCCCCCC
Q 020312            1 MDEEYDVIVLGTGLKECILSGLLSVDGLK-VLHMDRNDYYGG   41 (328)
Q Consensus         1 ~~~~~dvvIvG~G~aGl~aA~~L~~~G~~-V~vlE~~~~~GG   41 (328)
                      |+.++||+|||||++||++|..|+++|.+ |+|+|+++.++.
T Consensus         1 M~~~~dVvIVGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~~   42 (410)
T 3c96_A            1 MSEPIDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRP   42 (410)
T ss_dssp             ---CCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSSCCC
T ss_pred             CCCCCeEEEECCCHHHHHHHHHHHhCCCCeEEEEECCCCccc
Confidence            77889999999999999999999999999 999999887654

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=98.77  E-value=3e-09  Score=92.36  Aligned_cols=44  Identities=20%  Similarity=0.323  Sum_probs=39.5

Q ss_pred             CCCcccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCccc
Q 020312            1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (328)
Q Consensus         1 ~~~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~   44 (328)
                      |++++||+|||||++|++||++|+++|++|+|+|+++.+||.+.
T Consensus         2 ~~~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~   45 (335)
T 2zbw_A            2 AADHTDVLIVGAGPTGLFAGFYVGMRGLSFRFVDPLPEPGGQLT   45 (335)
T ss_dssp             -CCEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSCHHHH
T ss_pred             CCCcCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCCCeee
Confidence            34569999999999999999999999999999999999998653

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=98.73  E-value=6.5e-09  Score=89.66  Aligned_cols=43  Identities=21%  Similarity=0.448  Sum_probs=37.5

Q ss_pred             CCCcccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCccc
Q 020312            1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (328)
Q Consensus         1 ~~~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~   44 (328)
                      |+.++||+|||||++|++||+.|+++|++|+|+|+ ..+||.+.
T Consensus        13 m~~~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~-~~~gg~~~   55 (319)
T 3cty_A           13 KERDFDVVIVGAGAAGFSAAVYAARSGFSVAILDK-AVAGGLTA   55 (319)
T ss_dssp             -CCEEEEEEECCSHHHHHHHHHHHHTTCCEEEEES-SSTTGGGG
T ss_pred             ccCCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeC-CCCCcccc
Confidence            45568999999999999999999999999999999 56777654

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=98.72  E-value=4.7e-09  Score=95.41  Aligned_cols=57  Identities=16%  Similarity=0.114  Sum_probs=45.7

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEE-e-cCceEEcCEEEECCCCCcc
Q 020312          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVT-S-EGETAKCKKVVCDPSYLPN  290 (328)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~-~-~g~~~~ad~vV~~~~~~~~  290 (328)
                      ..+.+.+.+.+++.|++++++++|++|..+ ++..+.|+ + +|+ +.||.||++++..|+
T Consensus       211 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~-~~~~~~v~~~~~g~-i~aD~Vv~a~G~~p~  269 (463)
T 4dna_A          211 QDMRRGLHAAMEEKGIRILCEDIIQSVSAD-ADGRRVATTMKHGE-IVADQVMLALGRMPN  269 (463)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEEC-TTSCEEEEESSSCE-EEESEEEECSCEEES
T ss_pred             HHHHHHHHHHHHHCCCEEECCCEEEEEEEc-CCCEEEEEEcCCCe-EEeCEEEEeeCcccC
Confidence            346778888899999999999999999987 45445677 6 565 999999998877544

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=98.72  E-value=7e-09  Score=90.66  Aligned_cols=42  Identities=26%  Similarity=0.374  Sum_probs=39.1

Q ss_pred             CcccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCccc
Q 020312            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (328)
Q Consensus         3 ~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~   44 (328)
                      +++||+|||||++|+++|..|+++|++|+|+|+++.+||...
T Consensus         2 ~~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~gg~~~   43 (357)
T 4a9w_A            2 DSVDVVVIGGGQSGLSAGYFLRRSGLSYVILDAEASPGGAWQ   43 (357)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHSSCCEEEECCSSSSSGGGG
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCccc
Confidence            468999999999999999999999999999999999998754

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*

Probab=98.72  E-value=1e-08  Score=91.36  Aligned_cols=40  Identities=20%  Similarity=0.337  Sum_probs=36.3

Q ss_pred             CCcccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCC
Q 020312            2 DEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG   41 (328)
Q Consensus         2 ~~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG   41 (328)
                      +.++||+|||||++||++|..|+++|.+|+|+|+++.++.
T Consensus        24 ~~~~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~   63 (398)
T 2xdo_A           24 LSDKNVAIIGGGPVGLTMAKLLQQNGIDVSVYERDNDREA   63 (398)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHTTTCEEEEEECSSSTTC
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCccc
Confidence            4568999999999999999999999999999999876654

>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa}

Probab=98.72  E-value=8.3e-09  Score=88.81  Aligned_cols=41  Identities=22%  Similarity=0.284  Sum_probs=37.7

Q ss_pred             cccEEEECCChhHHHHHHhhhhC--CCeEEEeccCCCCCCccc
Q 020312            4 EYDVIVLGTGLKECILSGLLSVD--GLKVLHMDRNDYYGGESS   44 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~--G~~V~vlE~~~~~GG~~~   44 (328)
                      ++||+|||||++||+||++|+++  |++|+|+|++..+||.+.
T Consensus        79 ~~DVvIVGgG~AGL~aA~~La~~~~G~~V~LiEk~~~~GGg~~  121 (344)
T 3jsk_A           79 ETDIVIVGAGSCGLSAAYVLSTLRPDLRITIVEAGVAPGGGAW  121 (344)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHHCTTSCEEEEESSSSCCTTTT
T ss_pred             cCCEEEECccHHHHHHHHHHHhcCCCCEEEEEeCCCccCCccc
Confidence            58999999999999999999997  999999999998887543

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=98.72  E-value=5e-09  Score=95.82  Aligned_cols=56  Identities=20%  Similarity=0.245  Sum_probs=46.0

Q ss_pred             cHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe-cCceEEcCEEEECCCCCcc
Q 020312          233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLPN  290 (328)
Q Consensus       233 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~-~g~~~~ad~vV~~~~~~~~  290 (328)
                      .+.+.+.+.+++.|++++++++|++|..+ ++.+ .|++ +++++.||.||++++..|.
T Consensus       233 ~~~~~l~~~l~~~Gv~i~~~~~V~~i~~~-~~~v-~v~~~~g~~i~aD~Vi~A~G~~p~  289 (484)
T 3o0h_A          233 DLRQLLNDAMVAKGISIIYEATVSQVQST-ENCY-NVVLTNGQTICADRVMLATGRVPN  289 (484)
T ss_dssp             HHHHHHHHHHHHHTCEEESSCCEEEEEEC-SSSE-EEEETTSCEEEESEEEECCCEEEC
T ss_pred             HHHHHHHHHHHHCCCEEEeCCEEEEEEee-CCEE-EEEECCCcEEEcCEEEEeeCCCcC
Confidence            46777888888999999999999999987 6665 5555 7778999999998877544

>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1

Probab=98.72  E-value=3.3e-08  Score=92.28  Aligned_cols=37  Identities=30%  Similarity=0.497  Sum_probs=33.8

Q ss_pred             CcccEEEECCChhHHHHHHhhhh-CCCeEEEeccCCCC
Q 020312            3 EEYDVIVLGTGLKECILSGLLSV-DGLKVLHMDRNDYY   39 (328)
Q Consensus         3 ~~~dvvIvG~G~aGl~aA~~L~~-~G~~V~vlE~~~~~   39 (328)
                      .++|++|||||.+|+++|.+|++ .|.+|+|||++...
T Consensus        23 ~~~d~iivG~G~~g~~~a~~l~~~~~~~v~~~e~g~~~   60 (587)
T 1gpe_A           23 KTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFYE   60 (587)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTSTTCCEEEEESSCCC
T ss_pred             ccCCEEEECcCHHHHHHHHHHHhCCCCcEEEEecCCcc
Confidence            36999999999999999999999 89999999997654

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=98.71  E-value=1.3e-08  Score=92.19  Aligned_cols=44  Identities=16%  Similarity=0.220  Sum_probs=39.7

Q ss_pred             CCcccEEEECCChhHHHHHHhhhhCCC--eEEEeccCCCCCCcccc
Q 020312            2 DEEYDVIVLGTGLKECILSGLLSVDGL--KVLHMDRNDYYGGESSS   45 (328)
Q Consensus         2 ~~~~dvvIvG~G~aGl~aA~~L~~~G~--~V~vlE~~~~~GG~~~s   45 (328)
                      +..+||+|||||++||+||.+|+++|.  +|+|+|+++.+||....
T Consensus         4 ~~~~dV~IIGaG~aGl~aA~~L~~~G~~~~V~v~E~~~~~GG~~~~   49 (447)
T 2gv8_A            4 PTIRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNY   49 (447)
T ss_dssp             CSCCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSSSSTTCSC
T ss_pred             CCCCEEEEECccHHHHHHHHHHHhcCCCCCeEEEecCCCCCCeecC
Confidence            456899999999999999999999999  99999999999986543

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=98.70  E-value=9.7e-09  Score=94.74  Aligned_cols=59  Identities=19%  Similarity=0.153  Sum_probs=46.9

Q ss_pred             cHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcE--EEEEe-cCc-eEEcCEEEECCCCCcch
Q 020312          233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKV--VGVTS-EGE-TAKCKKVVCDPSYLPNK  291 (328)
Q Consensus       233 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v--~~v~~-~g~-~~~ad~vV~~~~~~~~~  291 (328)
                      .+.+.+.+.+++.|++++++++|++|..++++++  +.|++ +|+ ++.||.||++++..|+.
T Consensus       256 ~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~~v~~~~v~~~~G~~~i~aD~Vv~A~G~~p~~  318 (523)
T 1mo9_A          256 ETRAYVLDRMKEQGMEIISGSNVTRIEEDANGRVQAVVAMTPNGEMRIETDFVFLGLGEQPRS  318 (523)
T ss_dssp             HHHHHHHHHHHHTTCEEESSCEEEEEEECTTSBEEEEEEEETTEEEEEECSCEEECCCCEECC
T ss_pred             HHHHHHHHHHHhCCcEEEECCEEEEEEEcCCCceEEEEEEECCCcEEEEcCEEEECcCCccCC
Confidence            4677888888999999999999999997634444  44566 565 89999999999887653

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=98.69  E-value=8.5e-09  Score=89.48  Aligned_cols=43  Identities=16%  Similarity=0.222  Sum_probs=38.4

Q ss_pred             CcccEEEECCChhHHHHHHhhhhCCCeEEEecc----CCCCCCcccc
Q 020312            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDR----NDYYGGESSS   45 (328)
Q Consensus         3 ~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~----~~~~GG~~~s   45 (328)
                      ..+||+|||||++||+||+.|+++|++|+|+|+    +..+||....
T Consensus        21 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~vie~~~~~~~~~gg~~~~   67 (338)
T 3itj_A           21 VHNKVTIIGSGPAAHTAAIYLARAEIKPILYEGMMANGIAAGGQLTT   67 (338)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGGGG
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCCCCCcCccccc
Confidence            458999999999999999999999999999999    4578887654

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=98.69  E-value=1.1e-08  Score=88.07  Aligned_cols=40  Identities=25%  Similarity=0.316  Sum_probs=36.7

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCcccc
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSS   45 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~s   45 (328)
                      ++||+|||||++||+||++|+++|++|+|+|++  +||....
T Consensus        15 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~--~gg~~~~   54 (323)
T 3f8d_A           15 KFDVIIVGLGPAAYGAALYSARYMLKTLVIGET--PGGQLTE   54 (323)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS--TTGGGGG
T ss_pred             ccCEEEECccHHHHHHHHHHHHCCCcEEEEecc--CCCeecc
Confidence            479999999999999999999999999999998  8886654

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=98.68  E-value=1.1e-08  Score=88.54  Aligned_cols=42  Identities=21%  Similarity=0.381  Sum_probs=37.8

Q ss_pred             CcccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCcccc
Q 020312            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSS   45 (328)
Q Consensus         3 ~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~s   45 (328)
                      ..+||+|||||++|++||.+|+++|++|+|+|++ .+||.+..
T Consensus         7 ~~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~-~~gg~~~~   48 (325)
T 2q7v_A            7 HDYDVVIIGGGPAGLTAAIYTGRAQLSTLILEKG-MPGGQIAW   48 (325)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTGGGGG
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHcCCcEEEEeCC-CCCccccc
Confidence            3589999999999999999999999999999998 67886643

>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A*

Probab=98.67  E-value=1.3e-08  Score=87.13  Aligned_cols=41  Identities=27%  Similarity=0.318  Sum_probs=37.8

Q ss_pred             cccEEEECCChhHHHHHHhhhhC--CCeEEEeccCCCCCCccc
Q 020312            4 EYDVIVLGTGLKECILSGLLSVD--GLKVLHMDRNDYYGGESS   44 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~--G~~V~vlE~~~~~GG~~~   44 (328)
                      ++||+|||||++||+||+.|+++  |++|+|+|+++.+||.++
T Consensus        65 ~~dv~IiG~G~aGl~aA~~la~~~~g~~V~v~e~~~~~ggg~~  107 (326)
T 2gjc_A           65 VSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSW  107 (326)
T ss_dssp             EESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTTTT
T ss_pred             cCCEEEECccHHHHHHHHHHHhcCCCCeEEEEecCcccccccc
Confidence            47999999999999999999998  999999999999988544

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=98.67  E-value=5.5e-09  Score=95.37  Aligned_cols=44  Identities=16%  Similarity=0.329  Sum_probs=40.5

Q ss_pred             CCCcccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCccc
Q 020312            1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (328)
Q Consensus         1 ~~~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~   44 (328)
                      |+.++||+|||||++|++||..|+++|++|+|+|+++.+||.+.
T Consensus         2 M~~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~GG~~~   45 (478)
T 1v59_A            2 INKSHDVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKLGGTCL   45 (478)
T ss_dssp             EEEEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHH
T ss_pred             CCCcCCEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCcCCccc
Confidence            55679999999999999999999999999999999999998654

>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}

Probab=98.67  E-value=1.3e-08  Score=90.91  Aligned_cols=57  Identities=14%  Similarity=0.129  Sum_probs=42.7

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCccee---------EEEecCCCcEEEEEecCceEEcCEEEECCCCCcc
Q 020312          232 GELPQAFARLSAVYGGTYMLNKPEC---------KVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPN  290 (328)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~---------~I~~~~~~~v~~v~~~g~~~~ad~vV~~~~~~~~  290 (328)
                      ..+.+.|.+.+++.|++++++++|+         +|..+ ++++ .|++++++++||.||.+.+..+.
T Consensus       172 ~~l~~~L~~~~~~~Gv~i~~~~~v~~~~g~~~~~~i~~~-~~~v-~v~~~~g~i~a~~VV~A~G~~s~  237 (405)
T 3c4n_A          172 GSLALLAAQQAIGQGAGLLLNTRAELVPGGVRLHRLTVT-NTHQ-IVVHETRQIRAGVIIVAAGAAGP  237 (405)
T ss_dssp             HHHHHHHHHHHHTTTCEEECSCEEEEETTEEEEECBCC---------CBCCEEEEEEEEEECCGGGHH
T ss_pred             HHHHHHHHHHHHHCCCEEEcCCEEEeccccccccceEee-CCeE-EEEECCcEEECCEEEECCCccHH
Confidence            4588999999999999999999999         99877 6665 67775558999999988887654

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=98.66  E-value=7.6e-09  Score=94.52  Aligned_cols=44  Identities=36%  Similarity=0.471  Sum_probs=40.3

Q ss_pred             CCCcccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCccc
Q 020312            1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (328)
Q Consensus         1 ~~~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~   44 (328)
                      |+.++||+|||||++|++||..|++.|++|+|+|+++.+||.+.
T Consensus         3 m~~~~dVvIIGaG~aGl~aA~~l~~~G~~V~liE~~~~~GG~~~   46 (482)
T 1ojt_A            3 ADAEYDVVVLGGGPGGYSAAFAAADEGLKVAIVERYKTLGGVCL   46 (482)
T ss_dssp             SEEEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSCSSHHHH
T ss_pred             CCCcCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCCcee
Confidence            55579999999999999999999999999999999999998653

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=98.66  E-value=1.2e-08  Score=92.74  Aligned_cols=56  Identities=14%  Similarity=0.166  Sum_probs=45.6

Q ss_pred             cHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEecCceEEcCEEEECCCCCcc
Q 020312          233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPN  290 (328)
Q Consensus       233 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~~g~~~~ad~vV~~~~~~~~  290 (328)
                      .+.+.+.+.+++.|++++++++|++|..+ ++ .+.|+++++++.||.||++++..|+
T Consensus       217 ~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~-~~-~~~v~~~~~~i~aD~Vv~a~G~~p~  272 (467)
T 1zk7_A          217 AIGEAVTAAFRAEGIEVLEHTQASQVAHM-DG-EFVLTTTHGELRADKLLVATGRTPN  272 (467)
T ss_dssp             HHHHHHHHHHHHTTCEEETTCCEEEEEEE-TT-EEEEEETTEEEEESEEEECSCEEES
T ss_pred             HHHHHHHHHHHhCCCEEEcCCEEEEEEEe-CC-EEEEEECCcEEEcCEEEECCCCCcC
Confidence            47778888889999999999999999876 44 4456667778999999988877554

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=98.65  E-value=1e-08  Score=88.70  Aligned_cols=40  Identities=18%  Similarity=0.228  Sum_probs=38.0

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCcc
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGES   43 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~   43 (328)
                      .+||+|||||++||+||+.|+++|++|+|+|+++.+||..
T Consensus         7 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gG~~   46 (332)
T 3lzw_A            7 VYDITIIGGGPVGLFTAFYGGMRQASVKIIESLPQLGGQL   46 (332)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHH
T ss_pred             cceEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCCCcee
Confidence            4799999999999999999999999999999999999876

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=98.65  E-value=1.1e-08  Score=92.98  Aligned_cols=43  Identities=21%  Similarity=0.385  Sum_probs=38.7

Q ss_pred             CCCcccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCccc
Q 020312            1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (328)
Q Consensus         1 ~~~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~   44 (328)
                      |++++||+|||||++|++||.+|++.|++|+|+|++ .+||.+.
T Consensus         1 M~~~~dVvIIGgG~aGl~aA~~l~~~g~~V~liE~~-~~GG~~~   43 (463)
T 2r9z_A            1 MTQHFDLIAIGGGSGGLAVAEKAAAFGKRVALIESK-ALGGTCV   43 (463)
T ss_dssp             -CCCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTHHHH
T ss_pred             CCccCcEEEECCCHHHHHHHHHHHhCCCcEEEEcCC-CCCCcCc
Confidence            777899999999999999999999999999999998 6788654

>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A*

Probab=98.65  E-value=9.9e-09  Score=89.77  Aligned_cols=37  Identities=14%  Similarity=0.002  Sum_probs=33.7

Q ss_pred             ccEEEECCChhHHHHHHhhhhCC------CeEEEeccCCCCCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDG------LKVLHMDRNDYYGG   41 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G------~~V~vlE~~~~~GG   41 (328)
                      +||+|||||++||++|++|+++|      .+|+|||++...+|
T Consensus         1 mdVvIIGgGi~Gls~A~~La~~G~~~~p~~~V~vlE~~~~~~~   43 (351)
T 3g3e_A            1 MRVVVIGAGVIGLSTALCIHERYHSVLQPLDIKVYADRFTPLT   43 (351)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHTTTSSSCEEEEEESSCGGGS
T ss_pred             CcEEEECCCHHHHHHHHHHHHhccccCCCceEEEEECCCCCCC
Confidence            49999999999999999999998      99999999876555

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*

Probab=98.65  E-value=2.1e-08  Score=88.67  Aligned_cols=38  Identities=16%  Similarity=0.135  Sum_probs=35.6

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCC
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG   41 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG   41 (328)
                      .+||+|||||++||++|+.|+++|.+|+|+|+++.+++
T Consensus        11 ~~dVvIVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~   48 (379)
T 3alj_A           11 TRRAEVAGGGFAGLTAAIALKQNGWDVRLHEKSSELRA   48 (379)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSCCC
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCC
Confidence            58999999999999999999999999999999887764

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=98.64  E-value=1.7e-08  Score=92.14  Aligned_cols=57  Identities=11%  Similarity=0.124  Sum_probs=43.4

Q ss_pred             cHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEecC---ceEEcCEEEECCCCCcc
Q 020312          233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEG---ETAKCKKVVCDPSYLPN  290 (328)
Q Consensus       233 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~~g---~~~~ad~vV~~~~~~~~  290 (328)
                      .+.+.+.+.+++.|++++++++|++|..+ ++.+.....++   +++.+|.||++++..|+
T Consensus       222 ~~~~~l~~~l~~~Gv~v~~~~~v~~i~~~-~~~~~v~~~~~~g~~~~~~D~vi~a~G~~p~  281 (476)
T 3lad_A          222 QVAKEAQKILTKQGLKILLGARVTGTEVK-NKQVTVKFVDAEGEKSQAFDKLIVAVGRRPV  281 (476)
T ss_dssp             HHHHHHHHHHHHTTEEEEETCEEEEEEEC-SSCEEEEEESSSEEEEEEESEEEECSCEEEC
T ss_pred             HHHHHHHHHHHhCCCEEEECCEEEEEEEc-CCEEEEEEEeCCCcEEEECCEEEEeeCCccc
Confidence            46777778888999999999999999987 55544333333   57999999988776543

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=98.64  E-value=1.1e-08  Score=92.65  Aligned_cols=57  Identities=9%  Similarity=0.088  Sum_probs=44.9

Q ss_pred             cHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe-cCceEEcCEEEECCCCCcc
Q 020312          233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLPN  290 (328)
Q Consensus       233 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~-~g~~~~ad~vV~~~~~~~~  290 (328)
                      .+.+.+.+.+++.|++++++++|++|..+ ++..+.|++ +|+++.||.||++++..|+
T Consensus       209 ~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~-~~~~~~v~~~~g~~i~~D~vv~a~G~~p~  266 (450)
T 1ges_A          209 MISETLVEVMNAEGPQLHTNAIPKAVVKN-TDGSLTLELEDGRSETVDCLIWAIGREPA  266 (450)
T ss_dssp             HHHHHHHHHHHHHSCEEECSCCEEEEEEC-TTSCEEEEETTSCEEEESEEEECSCEEES
T ss_pred             HHHHHHHHHHHHCCCEEEeCCEEEEEEEe-CCcEEEEEECCCcEEEcCEEEECCCCCcC
Confidence            46777778888999999999999999976 433344555 7778999999988876544

>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ...

Probab=98.63  E-value=2.2e-08  Score=94.02  Aligned_cols=43  Identities=33%  Similarity=0.520  Sum_probs=38.0

Q ss_pred             CCCcccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCcc
Q 020312            1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGES   43 (328)
Q Consensus         1 ~~~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~   43 (328)
                      |+.++||+|||||++|++||++|+++|++|+|+|+.+..||.+
T Consensus        43 ~~~~~dvvIIG~G~aGl~aA~~l~~~G~~V~liE~~~~~gg~~   85 (623)
T 3pl8_A           43 MDIKYDVVIVGSGPIGCTYARELVGAGYKVAMFDIGEIDSGLK   85 (623)
T ss_dssp             ---CEEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCSSSS
T ss_pred             ccccCCEEEECCcHHHHHHHHHHHhCCCcEEEEeccCCCCCcc
Confidence            3456899999999999999999999999999999999998854

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=98.62  E-value=1.4e-08  Score=87.44  Aligned_cols=57  Identities=18%  Similarity=0.056  Sum_probs=44.8

Q ss_pred             cHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe-c----C--ceEEcCEEEECCCCCcc
Q 020312          233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-E----G--ETAKCKKVVCDPSYLPN  290 (328)
Q Consensus       233 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~-~----g--~~~~ad~vV~~~~~~~~  290 (328)
                      .+.+.+.+.+++.|++++++++|++|..+ ++++.+|+. +    +  +++.||.||++++..|+
T Consensus       185 ~~~~~l~~~l~~~gv~i~~~~~v~~i~~~-~~~v~~v~~~~~~~~g~~~~i~~D~vv~a~G~~p~  248 (320)
T 1trb_A          185 ILIKRLMDKVENGNIILHTNRTLEEVTGD-QMGVTGVRLRDTQNSDNIESLDVAGLFVAIGHSPN  248 (320)
T ss_dssp             HHHHHHHHHHHTSSEEEECSCEEEEEEEC-SSSEEEEEEECCTTCCCCEEEECSEEEECSCEEES
T ss_pred             HHHHHHHHhcccCCeEEEcCceeEEEEcC-CCceEEEEEEeccCCCceEEEEcCEEEEEeCCCCC
Confidence            35666777778899999999999999987 667766665 3    4  47999999998887654

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=98.62  E-value=2e-08  Score=92.47  Aligned_cols=43  Identities=26%  Similarity=0.348  Sum_probs=38.4

Q ss_pred             CcccEEEECCChhHHHHHHhhhhCCCeEEEeccCC--------CCCCcccc
Q 020312            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND--------YYGGESSS   45 (328)
Q Consensus         3 ~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~--------~~GG~~~s   45 (328)
                      .++||+|||||++|++||..|++.|++|+|+|+++        .+||.+..
T Consensus        31 ~~~DVvVIGgGpaGl~aA~~la~~G~~V~liEk~~~~~~~~~~~~GGtc~~   81 (519)
T 3qfa_A           31 YDYDLIIIGGGSGGLAAAKEAAQYGKKVMVLDFVTPTPLGTRWGLGGTCVN   81 (519)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTCCCCCTTCHHHH
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCCCeEEEEeccCccccccCCCcccccCC
Confidence            46899999999999999999999999999999964        78886643

>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7

Probab=98.61  E-value=2.5e-08  Score=81.96  Aligned_cols=52  Identities=21%  Similarity=0.203  Sum_probs=40.3

Q ss_pred             HHHHHHHHHHc-CcEEEcCcceeEEEecCCCcEEEEEe-cCceEEcCEEEECCCCC
Q 020312          235 PQAFARLSAVY-GGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYL  288 (328)
Q Consensus       235 ~~~l~~~~~~~-G~~i~~~~~V~~I~~~~~~~v~~v~~-~g~~~~ad~vV~~~~~~  288 (328)
                      .+.+.+.+++. |++++ +++|++|..+ ++++++|.+ ++++++||.||.+.+..
T Consensus        71 ~~~l~~~~~~~~gv~i~-~~~v~~i~~~-~~~v~~v~~~~g~~i~a~~VV~A~G~~  124 (232)
T 2cul_A           71 HARAKYLLEGLRPLHLF-QATATGLLLE-GNRVVGVRTWEGPPARGEKVVLAVGSF  124 (232)
T ss_dssp             HHHHHHHHHTCTTEEEE-ECCEEEEEEE-TTEEEEEEETTSCCEECSEEEECCTTC
T ss_pred             HHHHHHHHHcCCCcEEE-EeEEEEEEEe-CCEEEEEEECCCCEEECCEEEECCCCC
Confidence            34445556776 89998 6799999987 778777877 67789999999877764

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=98.60  E-value=2.9e-08  Score=92.01  Aligned_cols=42  Identities=29%  Similarity=0.275  Sum_probs=39.0

Q ss_pred             CcccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCccc
Q 020312            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (328)
Q Consensus         3 ~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~   44 (328)
                      .++||+|||||++|+++|+.|+++|.+|+|+|+++.+||.+.
T Consensus        15 ~~~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~GG~w~   56 (542)
T 1w4x_A           15 EEVDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWY   56 (542)
T ss_dssp             SEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHH
T ss_pred             CCCCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCCCCccc
Confidence            468999999999999999999999999999999999998653

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=98.60  E-value=2.8e-08  Score=89.87  Aligned_cols=40  Identities=30%  Similarity=0.331  Sum_probs=37.7

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCcc
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGES   43 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~   43 (328)
                      .+||+|||||++||+||++|+++|++|+|+|+++.+||..
T Consensus       122 ~~~V~IIGgGpAGl~aA~~L~~~G~~V~v~e~~~~~GG~l  161 (456)
T 2vdc_G          122 GLSVGVIGAGPAGLAAAEELRAKGYEVHVYDRYDRMGGLL  161 (456)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSCSTHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCee
Confidence            4799999999999999999999999999999999999853

>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}

Probab=98.59  E-value=3.1e-08  Score=88.36  Aligned_cols=36  Identities=28%  Similarity=0.369  Sum_probs=33.1

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCC
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY   39 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~   39 (328)
                      +++|+|||||++||++|..|+++|++|+|+||++.+
T Consensus         1 sm~V~IVGaGpaGl~~A~~L~~~G~~v~v~Er~~~~   36 (412)
T 4hb9_A            1 SMHVGIIGAGIGGTCLAHGLRKHGIKVTIYERNSAA   36 (412)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCSS
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCCEEEEecCCCC
Confidence            368999999999999999999999999999997654

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=98.59  E-value=1.8e-08  Score=91.92  Aligned_cols=58  Identities=9%  Similarity=0.006  Sum_probs=44.9

Q ss_pred             cHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe-cC-ceEEcCEEEECCCCCcc
Q 020312          233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EG-ETAKCKKVVCDPSYLPN  290 (328)
Q Consensus       233 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~-~g-~~~~ad~vV~~~~~~~~  290 (328)
                      .+.+.+.+.+++.|++++++++|++|..++++.++.|++ +| +++.||.||++++..|+
T Consensus       227 ~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~~v~~~~G~~~i~~D~vv~a~G~~p~  286 (479)
T 2hqm_A          227 CIQNTITDHYVKEGINVHKLSKIVKVEKNVETDKLKIHMNDSKSIDDVDELIWTIGRKSH  286 (479)
T ss_dssp             HHHHHHHHHHHHHTCEEECSCCEEEEEECC-CCCEEEEETTSCEEEEESEEEECSCEEEC
T ss_pred             HHHHHHHHHHHhCCeEEEeCCEEEEEEEcCCCcEEEEEECCCcEEEEcCEEEECCCCCCc
Confidence            466777788889999999999999998762343455666 66 68999999988876554

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=98.59  E-value=2.5e-08  Score=87.74  Aligned_cols=40  Identities=18%  Similarity=0.281  Sum_probs=36.8

Q ss_pred             CcccEEEECCChhHHHHHHhhhhCCC-eEEEeccCCCCCCcc
Q 020312            3 EEYDVIVLGTGLKECILSGLLSVDGL-KVLHMDRNDYYGGES   43 (328)
Q Consensus         3 ~~~dvvIvG~G~aGl~aA~~L~~~G~-~V~vlE~~~~~GG~~   43 (328)
                      +++||+|||||++|+++|.+|++.|+ +|+|+|+++ +||..
T Consensus         3 ~~~~vvIIGaG~aGl~aA~~l~~~g~~~v~lie~~~-~Gg~~   43 (369)
T 3d1c_A            3 QHHKVAIIGAGAAGIGMAITLKDFGITDVIILEKGT-VGHSF   43 (369)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCCEEEECSSS-TTHHH
T ss_pred             ccCcEEEECcCHHHHHHHHHHHHcCCCcEEEEecCC-CCCcc
Confidence            46899999999999999999999999 999999998 88754

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=98.59  E-value=2.1e-08  Score=91.24  Aligned_cols=41  Identities=27%  Similarity=0.411  Sum_probs=38.6

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCccc
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~   44 (328)
                      ++||+|||||++|++||.+|++.|++|+|+|+++.+||.+.
T Consensus         2 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~   42 (468)
T 2qae_A            2 PYDVVVIGGGPGGYVASIKAAQLGMKTACVEKRGALGGTCL   42 (468)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHH
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCcCC
Confidence            58999999999999999999999999999999999999764

>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2

Probab=98.59  E-value=3.8e-08  Score=87.56  Aligned_cols=37  Identities=16%  Similarity=0.163  Sum_probs=34.4

Q ss_pred             CcccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCC
Q 020312            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY   39 (328)
Q Consensus         3 ~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~   39 (328)
                      .++||+|||||++||++|+.|+++|++|+|+|+++.+
T Consensus         4 ~~~~V~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~   40 (397)
T 2vou_A            4 TTDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQP   40 (397)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCC
Confidence            4689999999999999999999999999999998763

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=98.58  E-value=2.1e-08  Score=91.83  Aligned_cols=40  Identities=23%  Similarity=0.278  Sum_probs=36.7

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCccc
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~   44 (328)
                      ++||+|||||++|++||..|+++|++|+|+|++. +||.|.
T Consensus         8 ~~DvvVIGgG~aGl~aA~~la~~G~~V~liE~~~-~GGtc~   47 (492)
T 3ic9_A            8 NVDVAIIGTGTAGMGAYRAAKKHTDKVVLIEGGA-YGTTCA   47 (492)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTCSCEEEEESSC-SSCHHH
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCC-CCCccc
Confidence            4899999999999999999999999999999965 888763

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=98.58  E-value=1.6e-08  Score=92.68  Aligned_cols=57  Identities=19%  Similarity=0.229  Sum_probs=45.9

Q ss_pred             cHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe-cCceEEcCEEEECCCCCcc
Q 020312          233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLPN  290 (328)
Q Consensus       233 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~-~g~~~~ad~vV~~~~~~~~  290 (328)
                      .+.+.+.+.+++.|++++++++|++|..+ ++..+.|++ +|+++.||.||++++..|+
T Consensus       236 ~~~~~l~~~l~~~GV~i~~~~~v~~i~~~-~~~~~~v~~~~G~~i~~D~vv~a~G~~p~  293 (495)
T 2wpf_A          236 TIREEVTKQLTANGIEIMTNENPAKVSLN-TDGSKHVTFESGKTLDVDVVMMAIGRIPR  293 (495)
T ss_dssp             HHHHHHHHHHHHTTCEEEESCCEEEEEEC-TTSCEEEEETTSCEEEESEEEECSCEEEC
T ss_pred             HHHHHHHHHHHhCCCEEEeCCEEEEEEEc-CCceEEEEECCCcEEEcCEEEECCCCccc
Confidence            46777888889999999999999999976 443345565 7778999999998887654

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=98.58  E-value=2.5e-08  Score=85.57  Aligned_cols=42  Identities=24%  Similarity=0.332  Sum_probs=37.6

Q ss_pred             CcccEEEECCChhHHHHHHhhhhCCCeEEE-eccCCCCCCcccc
Q 020312            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLH-MDRNDYYGGESSS   45 (328)
Q Consensus         3 ~~~dvvIvG~G~aGl~aA~~L~~~G~~V~v-lE~~~~~GG~~~s   45 (328)
                      +.+||+|||||++||+||..|+++|++|+| +|+ +.+||.+..
T Consensus         3 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~li~e~-~~~gG~~~~   45 (315)
T 3r9u_A            3 AMLDVAIIGGGPAGLSAGLYATRGGLKNVVMFEK-GMPGGQITS   45 (315)
T ss_dssp             SCEEEEEECCSHHHHHHHHHHHHHTCSCEEEECS-SSTTGGGGG
T ss_pred             CCceEEEECCCHHHHHHHHHHHHCCCCeEEEEeC-CCCCceeee
Confidence            468999999999999999999999999999 999 777886543

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.58  E-value=3.2e-08  Score=90.10  Aligned_cols=43  Identities=21%  Similarity=0.366  Sum_probs=39.7

Q ss_pred             CCcccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCccc
Q 020312            2 DEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (328)
Q Consensus         2 ~~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~   44 (328)
                      +.++||+|||||++|++||..|++.|++|+|+|+++.+||.+.
T Consensus         4 ~~~~dvvIIGaG~aGl~aA~~l~~~g~~V~liE~~~~~GG~~~   46 (470)
T 1dxl_A            4 SDENDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGALGGTCL   46 (470)
T ss_dssp             CCCCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSCCSHH
T ss_pred             CccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcccccc
Confidence            3569999999999999999999999999999999989999764

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=98.56  E-value=2.2e-08  Score=91.37  Aligned_cols=42  Identities=19%  Similarity=0.299  Sum_probs=37.2

Q ss_pred             CcccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCcccc
Q 020312            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSS   45 (328)
Q Consensus         3 ~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~s   45 (328)
                      .++||+|||||++|++||..|+++|++|+|+|++ .+||.+..
T Consensus        19 ~~~dVvIIGgG~aGl~aA~~la~~G~~V~liE~~-~~GG~~~~   60 (478)
T 3dk9_A           19 ASYDYLVIGGGSGGLASARRAAELGARAAVVESH-KLGGTCVN   60 (478)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTHHHHH
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC-CCCCcccc
Confidence            3689999999999999999999999999999976 67876533

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=98.55  E-value=2.6e-08  Score=90.80  Aligned_cols=42  Identities=24%  Similarity=0.384  Sum_probs=39.0

Q ss_pred             CcccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCccc
Q 020312            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (328)
Q Consensus         3 ~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~   44 (328)
                      .++||+|||||++|++||..|+++|++|+|+|+++.+||.+.
T Consensus         5 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~liE~~~~~GG~~~   46 (474)
T 1zmd_A            5 IDADVTVIGSGPGGYVAAIKAAQLGFKTVCIEKNETLGGTCL   46 (474)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSSHHHH
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCcCCccc
Confidence            468999999999999999999999999999999999999754

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=98.55  E-value=4.2e-08  Score=93.51  Aligned_cols=43  Identities=23%  Similarity=0.366  Sum_probs=39.7

Q ss_pred             CcccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCcccc
Q 020312            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSS   45 (328)
Q Consensus         3 ~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~s   45 (328)
                      .++||+|||||++||+||++|+++|++|+|+|+++.+||.+..
T Consensus       390 ~~~~VvIIGgG~AGl~aA~~La~~G~~V~liE~~~~~GG~~~~  432 (690)
T 3k30_A          390 SDARVLVVGAGPSGLEAARALGVRGYDVVLAEAGRDLGGRVTQ  432 (690)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSCTHHHH
T ss_pred             ccceEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCEeee
Confidence            3589999999999999999999999999999999999997654

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=98.55  E-value=3.8e-08  Score=90.05  Aligned_cols=43  Identities=23%  Similarity=0.259  Sum_probs=38.4

Q ss_pred             CcccEEEECCChhHHHHHHhhhhCCCeEEEecc--------CCCCCCcccc
Q 020312            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDR--------NDYYGGESSS   45 (328)
Q Consensus         3 ~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~--------~~~~GG~~~s   45 (328)
                      .+|||+|||||++|++||..|++.|++|+|+|+        +..+||.|..
T Consensus         5 ~~~DvvVIG~G~aGl~aA~~la~~G~~V~liEk~~~~~~~~~~~~GGtc~~   55 (488)
T 3dgz_A            5 QSFDLLVIGGGSGGLACAKEAAQLGKKVAVADYVEPSPRGTKWGLGGTCVN   55 (488)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTSCCCCTTCHHHH
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCCeEEEEEecccccccccCCcCCeecc
Confidence            469999999999999999999999999999998        5678886643

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=98.54  E-value=3.9e-08  Score=85.41  Aligned_cols=42  Identities=24%  Similarity=0.297  Sum_probs=37.0

Q ss_pred             CCcccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCccc
Q 020312            2 DEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (328)
Q Consensus         2 ~~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~   44 (328)
                      +..+||+|||||++|++||+.|+++|++|+|+|+. .+||.+.
T Consensus        12 ~~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~-~~gg~~~   53 (335)
T 2a87_A           12 HPVRDVIVIGSGPAGYTAALYAARAQLAPLVFEGT-SFGGALM   53 (335)
T ss_dssp             CCCEEEEEECCHHHHHHHHHHHHHTTCCCEEECCS-SCSCGGG
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC-CCCCcee
Confidence            44689999999999999999999999999999975 6777643

>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*

Probab=98.54  E-value=6.4e-08  Score=88.61  Aligned_cols=40  Identities=15%  Similarity=0.217  Sum_probs=36.8

Q ss_pred             CcccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCc
Q 020312            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGE   42 (328)
Q Consensus         3 ~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~   42 (328)
                      ..+||+|||||++||++|..|+++|.+|+|+|+++.+|+.
T Consensus        91 ~~~dVvIVGgG~aGl~aA~~La~~G~~V~liEk~~~~g~~  130 (497)
T 2bry_A           91 TNTKCLVVGAGPCGLRAAVELALLGARVVLVEKRIKFSRH  130 (497)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCSSCCCC
T ss_pred             CCCCEEEECccHHHHHHHHHHHHCCCeEEEEEeccccCCC
Confidence            3589999999999999999999999999999999888754

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=98.53  E-value=2.9e-08  Score=86.04  Aligned_cols=41  Identities=17%  Similarity=0.204  Sum_probs=37.0

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEecc----CCCCCCccc
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDR----NDYYGGESS   44 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~----~~~~GG~~~   44 (328)
                      ++||+|||||++|+++|+.|+++|++|+|+|+    ...+||...
T Consensus         8 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~   52 (333)
T 1vdc_A            8 NTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPGGQLT   52 (333)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGGG
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCeEEEEeccCccccCCCceee
Confidence            58999999999999999999999999999999    567777654

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=98.53  E-value=3.6e-08  Score=89.37  Aligned_cols=57  Identities=19%  Similarity=0.097  Sum_probs=45.2

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe-cCceEEcCEEEECCCCCcc
Q 020312          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLPN  290 (328)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~-~g~~~~ad~vV~~~~~~~~  290 (328)
                      ..+.+.+.+.+++.|++++++++|++|..+ ++. +.+++ +++++.||.||++++..|+
T Consensus       208 ~~~~~~l~~~l~~~Gv~i~~~~~V~~i~~~-~~~-v~v~~~~g~~i~~D~vv~A~G~~p~  265 (455)
T 2yqu_A          208 LEVSRAAERVFKKQGLTIRTGVRVTAVVPE-AKG-ARVELEGGEVLEADRVLVAVGRRPY  265 (455)
T ss_dssp             HHHHHHHHHHHHHHTCEEECSCCEEEEEEE-TTE-EEEEETTSCEEEESEEEECSCEEEC
T ss_pred             HHHHHHHHHHHHHCCCEEEECCEEEEEEEe-CCE-EEEEECCCeEEEcCEEEECcCCCcC
Confidence            356777888888999999999999999976 554 34555 6778999999988776543

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=98.53  E-value=5.3e-08  Score=82.82  Aligned_cols=56  Identities=14%  Similarity=0.062  Sum_probs=42.7

Q ss_pred             CCcCcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe-cCceEEcCEEEECCCCCcc
Q 020312          229 YGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLPN  290 (328)
Q Consensus       229 gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~-~g~~~~ad~vV~~~~~~~~  290 (328)
                      .+...+.+.+.+.+++.|++++. ++|++|..+ +    .|+. +++++.+|.||+++++.|.
T Consensus       171 ~~~~~~~~~~~~~l~~~gv~i~~-~~v~~i~~~-~----~v~~~~g~~~~~D~vi~a~G~~p~  227 (297)
T 3fbs_A          171 NGIVEPDADQHALLAARGVRVET-TRIREIAGH-A----DVVLADGRSIALAGLFTQPKLRIT  227 (297)
T ss_dssp             TTTCCCCHHHHHHHHHTTCEEEC-SCEEEEETT-E----EEEETTSCEEEESEEEECCEEECC
T ss_pred             CCCCCCCHHHHHHHHHCCcEEEc-ceeeeeecC-C----eEEeCCCCEEEEEEEEEccCcccC
Confidence            33335667777888999999995 999999754 2    4555 7889999999998877653

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=98.53  E-value=6.1e-08  Score=89.65  Aligned_cols=41  Identities=27%  Similarity=0.470  Sum_probs=38.4

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCccc
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~   44 (328)
                      ++||+|||||++|+++|..|++.|.+|+|+|+++.+||...
T Consensus         9 ~~dVvIIGaG~aGl~aA~~L~~~g~~v~iiE~~~~~GGtw~   49 (545)
T 3uox_A            9 ALDAVVIGAGVTGIYQAFLINQAGMKVLGIEAGEDVGGTWY   49 (545)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHH
T ss_pred             CCCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCCCCccc
Confidence            58999999999999999999999999999999999998654

>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A*

Probab=98.52  E-value=6.9e-08  Score=89.59  Aligned_cols=38  Identities=26%  Similarity=0.212  Sum_probs=35.3

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCC
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG   41 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG   41 (328)
                      ++||+|||||++||++|..|+++|.+|+|||+++.++.
T Consensus        26 ~~dVlIVGaGpaGl~~A~~La~~G~~V~vlEr~~~~~~   63 (549)
T 2r0c_A           26 ETDVLILGGGPVGMALALDLAHRQVGHLVVEQTDGTIT   63 (549)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCSCCS
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCC
Confidence            58999999999999999999999999999999987654

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=98.51  E-value=4.6e-08  Score=89.49  Aligned_cols=57  Identities=18%  Similarity=0.141  Sum_probs=45.8

Q ss_pred             cHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe-cCceEEcCEEEECCCCCcc
Q 020312          233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLPN  290 (328)
Q Consensus       233 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~-~g~~~~ad~vV~~~~~~~~  290 (328)
                      .+.+.+.+.+++.|++|+++++|++|..+ ++..+.|++ +|+++.||.||++++..|+
T Consensus       232 ~~~~~l~~~l~~~GV~i~~~~~v~~i~~~-~~~~~~v~~~~G~~i~~D~vv~a~G~~p~  289 (490)
T 1fec_A          232 ELRKQLTEQLRANGINVRTHENPAKVTKN-ADGTRHVVFESGAEADYDVVMLAIGRVPR  289 (490)
T ss_dssp             HHHHHHHHHHHHTTEEEEETCCEEEEEEC-TTSCEEEEETTSCEEEESEEEECSCEEES
T ss_pred             HHHHHHHHHHHhCCCEEEeCCEEEEEEEc-CCCEEEEEECCCcEEEcCEEEEccCCCcC
Confidence            46777888889999999999999999987 443345566 6778999999998877654

>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...

Probab=98.51  E-value=5.6e-08  Score=86.38  Aligned_cols=35  Identities=23%  Similarity=0.431  Sum_probs=33.0

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEeccCCC
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~   38 (328)
                      ++||+|||||++||++|+.|+++|++|+|+|+++.
T Consensus         2 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   36 (394)
T 1k0i_A            2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQTP   36 (394)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCH
T ss_pred             CccEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            57999999999999999999999999999999764

>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A*

Probab=98.50  E-value=8.8e-08  Score=90.45  Aligned_cols=39  Identities=15%  Similarity=0.276  Sum_probs=35.5

Q ss_pred             CCcccEEEECCChhHHHHHHhhhh-CCCeEEEeccCCCCC
Q 020312            2 DEEYDVIVLGTGLKECILSGLLSV-DGLKVLHMDRNDYYG   40 (328)
Q Consensus         2 ~~~~dvvIvG~G~aGl~aA~~L~~-~G~~V~vlE~~~~~G   40 (328)
                      +.++||+|||||++||++|+.|++ +|.+|+|||+++.++
T Consensus        30 ~~~~dVlIVGaGpaGL~~A~~La~~~G~~V~viEr~~~~~   69 (639)
T 2dkh_A           30 PSQVDVLIVGCGPAGLTLAAQLAAFPDIRTCIVEQKEGPM   69 (639)
T ss_dssp             CSEEEEEEECCSHHHHHHHHHHTTCTTSCEEEECSSSSCC
T ss_pred             CCCCcEEEECcCHHHHHHHHHHHHhCCCCEEEEeCCCCCC
Confidence            346899999999999999999999 999999999987654

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=98.50  E-value=4.5e-08  Score=88.98  Aligned_cols=41  Identities=29%  Similarity=0.482  Sum_probs=37.0

Q ss_pred             CcccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCccc
Q 020312            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (328)
Q Consensus         3 ~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~   44 (328)
                      .++||+|||||++|++||..|+++|++|+|+|++ .+||.+.
T Consensus         2 ~~~dvvIIGaG~aGl~aA~~l~~~G~~V~liE~~-~~gG~~~   42 (464)
T 2a8x_A            2 THYDVVVLGAGPGGYVAAIRAAQLGLSTAIVEPK-YWGGVCL   42 (464)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSS-CTTHHHH
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCC-CCCCccc
Confidence            3689999999999999999999999999999998 6777653

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=98.48  E-value=9.3e-08  Score=86.82  Aligned_cols=41  Identities=15%  Similarity=0.329  Sum_probs=38.0

Q ss_pred             ccEEEECCChhHHHHHHhhhh---CCCe---EEEeccCCCCCCcccc
Q 020312            5 YDVIVLGTGLKECILSGLLSV---DGLK---VLHMDRNDYYGGESSS   45 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~---~G~~---V~vlE~~~~~GG~~~s   45 (328)
                      +||+|||||++||+||..|++   .|.+   |+|+|+++.+||.+..
T Consensus         3 ~~V~IIGaG~aGl~aA~~L~~~~~~G~~~~~V~v~E~~~~~GG~w~~   49 (464)
T 2xve_A            3 TRIAILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWNY   49 (464)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHHTTCCCCEEEEECSSSSSCGGGSC
T ss_pred             CcEEEECccHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCCEeec
Confidence            699999999999999999999   9999   9999999999987543

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=98.48  E-value=9.4e-08  Score=81.94  Aligned_cols=39  Identities=15%  Similarity=0.305  Sum_probs=35.4

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCC-eEEEeccCCCCCCccc
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGL-KVLHMDRNDYYGGESS   44 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~-~V~vlE~~~~~GG~~~   44 (328)
                      +||+|||||++|++||..|+++|+ +|+|+|++ .+||.+.
T Consensus         2 ~dvvIIG~G~aGl~aA~~l~~~g~~~v~lie~~-~~gg~~~   41 (311)
T 2q0l_A            2 IDCAIIGGGPAGLSAGLYATRGGVKNAVLFEKG-MPGGQIT   41 (311)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCSSEEEECSS-STTCGGG
T ss_pred             ceEEEECccHHHHHHHHHHHHCCCCcEEEEcCC-CCCcccc
Confidence            699999999999999999999999 99999995 6777654

>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472}

Probab=98.47  E-value=8.8e-08  Score=84.73  Aligned_cols=35  Identities=17%  Similarity=0.297  Sum_probs=33.1

Q ss_pred             ccEEEECCChhHHHHHHhhhhC--CCeEEEeccCCCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVD--GLKVLHMDRNDYY   39 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~--G~~V~vlE~~~~~   39 (328)
                      +||+|||||++||++|+.|+++  |++|+|+|+++.+
T Consensus         1 ~dV~IVGaG~aGl~~A~~L~~~~~G~~V~v~E~~~~~   37 (381)
T 3c4a_A            1 MKILVIGAGPAGLVFASQLKQARPLWAIDIVEKNDEQ   37 (381)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSCTT
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCCEEEEECCCCC
Confidence            4899999999999999999999  9999999998776

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=98.47  E-value=9.3e-08  Score=87.34  Aligned_cols=57  Identities=16%  Similarity=0.098  Sum_probs=42.8

Q ss_pred             cHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe-cCc-----eEEcCEEEECCCCCcc
Q 020312          233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGE-----TAKCKKVVCDPSYLPN  290 (328)
Q Consensus       233 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~-~g~-----~~~ad~vV~~~~~~~~  290 (328)
                      .+.+.+.+.+++.|++++++++|++|..++++.+ .|+. +++     ++.+|.||++++..|.
T Consensus       228 ~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~-~v~~~~~~~~~~~~~~~D~vi~a~G~~p~  290 (483)
T 3dgh_A          228 QMAELVAASMEERGIPFLRKTVPLSVEKQDDGKL-LVKYKNVETGEESEDVYDTVLWAIGRKGL  290 (483)
T ss_dssp             HHHHHHHHHHHHTTCCEEETEEEEEEEECTTSCE-EEEEEETTTCCEEEEEESEEEECSCEEEC
T ss_pred             HHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCcE-EEEEecCCCCceeEEEcCEEEECcccccC
Confidence            4667777888999999999999999998634443 3443 332     6899999998877554

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=98.46  E-value=6e-08  Score=88.11  Aligned_cols=39  Identities=36%  Similarity=0.499  Sum_probs=36.5

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCcc
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGES   43 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~   43 (328)
                      ++||+|||||++|++||..|++.|++|+|+|+++ +||.+
T Consensus         6 ~~dvvIIG~G~aG~~aA~~l~~~g~~V~lie~~~-~GG~~   44 (464)
T 2eq6_A            6 TYDLIVIGTGPGGYHAAIRAAQLGLKVLAVEAGE-VGGVC   44 (464)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC-TTHHH
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC-CCCCC
Confidence            6899999999999999999999999999999988 78765

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=98.45  E-value=1.3e-07  Score=90.67  Aligned_cols=42  Identities=21%  Similarity=0.339  Sum_probs=39.1

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCcccc
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSS   45 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~s   45 (328)
                      .+||+|||||++||+||..|+++|++|+|+|+++.+||.+..
T Consensus       389 ~~~VvIIGgGpAGl~aA~~L~~~G~~Vtlie~~~~~GG~~~~  430 (729)
T 1o94_A          389 KDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIGGHLNQ  430 (729)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTHHH
T ss_pred             CceEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCeeee
Confidence            479999999999999999999999999999999999997644

>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida}

Probab=98.43  E-value=9.7e-08  Score=85.87  Aligned_cols=34  Identities=15%  Similarity=0.173  Sum_probs=31.9

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~   37 (328)
                      ++||+|||||++||++|+.|+++|++|+|+|+++
T Consensus        22 ~~~ViIVGaGpaGl~~A~~La~~G~~V~viE~~~   55 (430)
T 3ihm_A           22 KKRIGIVGAGTAGLHLGLFLRQHDVDVTVYTDRK   55 (430)
T ss_dssp             -CEEEEECCHHHHHHHHHHHHHTTCEEEEEESCC
T ss_pred             CCCEEEECCcHHHHHHHHHHHHCCCeEEEEcCCC
Confidence            3699999999999999999999999999999986

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.43  E-value=7.3e-08  Score=87.39  Aligned_cols=40  Identities=13%  Similarity=0.248  Sum_probs=37.3

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCccc
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~   44 (328)
                      ++||+|||||++|++||..|++.|++|+|+|+ +.+||.+.
T Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~-~~~GG~~~   44 (458)
T 1lvl_A            5 QTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEG-QALGGTCL   44 (458)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHTCCEEEECS-SCTTHHHH
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCEEEEEcc-CCCCCcCC
Confidence            58999999999999999999999999999999 78888764

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.43  E-value=9.1e-08  Score=86.74  Aligned_cols=40  Identities=23%  Similarity=0.293  Sum_probs=36.9

Q ss_pred             CcccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCcc
Q 020312            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGES   43 (328)
Q Consensus         3 ~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~   43 (328)
                      .++||+|||||++|++||..|++.|++|+|+|++ .+||.+
T Consensus         2 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~-~~gG~~   41 (455)
T 1ebd_A            2 IETETLVVGAGPGGYVAAIRAAQLGQKVTIVEKG-NLGGVC   41 (455)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTHHH
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCCeEEEEECC-CCCCcC
Confidence            4689999999999999999999999999999998 778865

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=98.43  E-value=6.9e-08  Score=88.57  Aligned_cols=56  Identities=20%  Similarity=0.161  Sum_probs=45.5

Q ss_pred             cHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe-cCceEEcCEEEECCCCCcc
Q 020312          233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLPN  290 (328)
Q Consensus       233 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~-~g~~~~ad~vV~~~~~~~~  290 (328)
                      .+.+.+.+.+++.|++++++++|++|..+ ++.+ .+++ +++++.||.||++++..|+
T Consensus       224 ~~~~~l~~~l~~~GV~i~~~~~V~~i~~~-~~~v-~v~~~~g~~i~aD~Vv~a~G~~p~  280 (499)
T 1xdi_A          224 DAALVLEESFAERGVRLFKNARAASVTRT-GAGV-LVTMTDGRTVEGSHALMTIGSVPN  280 (499)
T ss_dssp             HHHHHHHHHHHHTTCEEETTCCEEEEEEC-SSSE-EEEETTSCEEEESEEEECCCEEEC
T ss_pred             HHHHHHHHHHHHCCCEEEeCCEEEEEEEe-CCEE-EEEECCCcEEEcCEEEECCCCCcC
Confidence            46777888889999999999999999987 5554 4555 6778999999998877654

>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum}

Probab=98.41  E-value=1.6e-07  Score=87.37  Aligned_cols=39  Identities=28%  Similarity=0.414  Sum_probs=35.3

Q ss_pred             CcccEEEECCChhHHHHHHhhhhCCCeEEEeccCC-CCCC
Q 020312            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND-YYGG   41 (328)
Q Consensus         3 ~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~-~~GG   41 (328)
                      .++||+|||||++|++||+.|++.|.+|+|+|++. .+|+
T Consensus        20 ~~yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~~~iG~   59 (641)
T 3cp8_A           20 HMYDVIVVGAGHAGCEAALAVARGGLHCLLITSDLSAVAR   59 (641)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTC
T ss_pred             CcCCEEEECccHHHHHHHHHHHHCCCcEEEEEecccccCC
Confidence            46999999999999999999999999999999985 4555

>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}

Probab=98.41  E-value=1.5e-07  Score=88.62  Aligned_cols=54  Identities=13%  Similarity=0.094  Sum_probs=43.5

Q ss_pred             CcHHHHHHHHHHHc--CcEEEcCcceeEEEecCCC---cEEEEEe----cCc--eEEcCEEEECCC
Q 020312          232 GELPQAFARLSAVY--GGTYMLNKPECKVEFDEEG---KVVGVTS----EGE--TAKCKKVVCDPS  286 (328)
Q Consensus       232 ~~l~~~l~~~~~~~--G~~i~~~~~V~~I~~~~~~---~v~~v~~----~g~--~~~ad~vV~~~~  286 (328)
                      ..+...|.+.+++.  |++|+.++.|++|..+ ++   ++++|..    +++  .+.|+.||++.+
T Consensus       166 ~~i~~~L~~~a~~~~~gV~i~~~~~v~dLi~~-~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVLATG  230 (662)
T 3gyx_A          166 ESYKVIVAEAAKNALGQDRIIERIFIVKLLLD-KNTPNRIAGAVGFNLRANEVHIFKANAMVVACG  230 (662)
T ss_dssp             TSHHHHHHHHHHHHHCTTTEECSEEECCCEEC-SSSTTBEEEEEEEESSSSCEEEEECSEEEECCC
T ss_pred             HHHHHHHHHHHHhcCCCcEEEEceEEEEEEEe-CCccceEEEEEEEEcCCCcEEEEEeCEEEECCC
Confidence            56888888888887  9999999999999998 55   8888864    343  489999887554

>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina}

Probab=98.39  E-value=1.6e-07  Score=86.77  Aligned_cols=56  Identities=7%  Similarity=0.080  Sum_probs=44.1

Q ss_pred             CcHHHHHHHHHHH-cCcEEEcCcceeEEEecCCCcEEEEEe-cCceEEcCEEEECCCCC
Q 020312          232 GELPQAFARLSAV-YGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYL  288 (328)
Q Consensus       232 ~~l~~~l~~~~~~-~G~~i~~~~~V~~I~~~~~~~v~~v~~-~g~~~~ad~vV~~~~~~  288 (328)
                      ..+.+.|.+.+++ .|++++++ .|++|..++++.++.|++ +|++++||.||.+.+..
T Consensus       175 ~~l~~~L~~~a~~~~Gv~i~~~-~v~~i~~~~~g~~~~v~~~~g~~i~ad~vV~AdG~~  232 (526)
T 2pyx_A          175 AKFSQLLTEHCTQKLGVTHIRD-HVSQIINNQHGDIEKLITKQNGEISGQLFIDCTGAK  232 (526)
T ss_dssp             HHHHHHHHHHHHHTSCCEEEEC-CEEEEEECTTSCEEEEEESSSCEEECSEEEECSGGG
T ss_pred             HHHHHHHHHHHHhcCCCEEEEe-EEEEEEecCCCcEEEEEECCCCEEEcCEEEECCCcc
Confidence            3567778888888 89999999 599999874556667777 66789999999776653

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.39  E-value=1.4e-07  Score=86.47  Aligned_cols=57  Identities=7%  Similarity=0.028  Sum_probs=45.1

Q ss_pred             cHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe-cCce-EEcCEEEECCCCCcc
Q 020312          233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGET-AKCKKVVCDPSYLPN  290 (328)
Q Consensus       233 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~-~g~~-~~ad~vV~~~~~~~~  290 (328)
                      .+.+.+.+.+++.|++++++++|++|..+ ++..+.|++ +|++ +.+|.||++++..|+
T Consensus       218 ~~~~~l~~~l~~~gv~i~~~~~v~~i~~~-~~~~~~v~~~~g~~~~~~D~vi~a~G~~p~  276 (500)
T 1onf_A          218 SVINVLENDMKKNNINIVTFADVVEIKKV-SDKNLSIHLSDGRIYEHFDHVIYCVGRSPD  276 (500)
T ss_dssp             HHHHHHHHHHHHTTCEEECSCCEEEEEES-STTCEEEEETTSCEEEEESEEEECCCBCCT
T ss_pred             hhHHHHHHHHHhCCCEEEECCEEEEEEEc-CCceEEEEECCCcEEEECCEEEECCCCCcC
Confidence            46777788889999999999999999876 333244555 7777 999999998887665

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=98.38  E-value=2.1e-07  Score=79.67  Aligned_cols=39  Identities=23%  Similarity=0.448  Sum_probs=34.7

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCccc
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~   44 (328)
                      ++||+|||||++|++||..|+++|++|+|+|+  ..||.+.
T Consensus         1 ~~dvvIIG~G~aGl~aA~~l~~~g~~v~li~~--~~gG~~~   39 (310)
T 1fl2_A            1 AYDVLIVGSGPAGAAAAIYSARKGIRTGLMGE--RFGGQIL   39 (310)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTTTCCEEEECS--STTGGGG
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCcEEEEeC--CCCceec
Confidence            47999999999999999999999999999986  4677654

>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=98.38  E-value=1.1e-07  Score=87.00  Aligned_cols=41  Identities=22%  Similarity=0.241  Sum_probs=37.9

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCcccc
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSS   45 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~s   45 (328)
                      ++||+|||||++|++||++|+++ ++|+|+|+++++||....
T Consensus       108 ~~dVvIIGgG~aGl~aA~~L~~~-~~V~vie~~~~~GG~~~~  148 (493)
T 1y56_A          108 VVDVAIIGGGPAGIGAALELQQY-LTVALIEERGWLGGDMWL  148 (493)
T ss_dssp             EESCCEECCSHHHHHHHHHHTTT-CCEEEECTTSSSSCSGGG
T ss_pred             cCCEEEECccHHHHHHHHHHHhc-CCEEEEeCCCCCCCeeec
Confidence            47999999999999999999999 999999999999997643

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*

Probab=98.36  E-value=2.5e-07  Score=72.64  Aligned_cols=33  Identities=39%  Similarity=0.539  Sum_probs=31.8

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~   37 (328)
                      +||+|||||++|+.+|..|++.|.+|+|+|+++
T Consensus         2 ~~vvIIGgG~~Gl~~A~~l~~~g~~v~lie~~~   34 (180)
T 2ywl_A            2 WDVIVVGGGPSGLSAALFLARAGLKVLVLDGGR   34 (180)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEECSC
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            699999999999999999999999999999976

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=98.36  E-value=3.2e-07  Score=87.15  Aligned_cols=41  Identities=20%  Similarity=0.280  Sum_probs=38.4

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCccc
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~   44 (328)
                      .+||+|||||++|++||..|+++|++|+|+|+++.+||...
T Consensus       373 ~~~vvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~gg~~~  413 (671)
T 1ps9_A          373 KKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQFN  413 (671)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSCTTHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCCeee
Confidence            58999999999999999999999999999999999999753

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=98.34  E-value=1.9e-07  Score=84.78  Aligned_cols=39  Identities=28%  Similarity=0.330  Sum_probs=36.2

Q ss_pred             cccEEEECCChhHHHHHHhhhhCC-----CeEEEeccCCCCCCc
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDG-----LKVLHMDRNDYYGGE   42 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G-----~~V~vlE~~~~~GG~   42 (328)
                      .+||+|||||++||++|..|+++|     .+|+|||+++.+|..
T Consensus        30 ~~dVvIIGaG~aGl~aA~~L~~~g~~~~~~~v~liE~~~~~g~~   73 (463)
T 3s5w_A           30 VHDLIGVGFGPSNIALAIALQERAQAQGALEVLFLDKQGDYRWH   73 (463)
T ss_dssp             EESEEEECCSHHHHHHHHHHHHHHHHHCCCCEEEEESCSSCCSS
T ss_pred             cCCEEEECCCHHHHHHHHHHHhcccccCcccEEEEecCCCCCCc
Confidence            479999999999999999999999     999999999988743

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=98.34  E-value=2e-07  Score=91.93  Aligned_cols=41  Identities=27%  Similarity=0.347  Sum_probs=39.1

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCccc
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~   44 (328)
                      ++||+|||||++|++||..|+++|++|+|+|+++.+||.+.
T Consensus       128 ~~dVvVIGaGpAGl~AA~~la~~G~~V~lie~~~~~GG~~~  168 (965)
T 2gag_A          128 HTDVLVVGAGPAGLAAAREASRSGARVMLLDERAEAGGTLL  168 (965)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSSGGGG
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCceec
Confidence            58999999999999999999999999999999999999876

>3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A*

Probab=98.33  E-value=4.6e-07  Score=78.69  Aligned_cols=36  Identities=22%  Similarity=0.087  Sum_probs=32.9

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYG   40 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~G   40 (328)
                      +||+|||||++|+.||+.|+++|.+|+|+|++...+
T Consensus         2 ~dViVIGgG~AG~~AA~~la~~G~~V~liE~~~~~~   37 (443)
T 3g5s_A            2 ERVNVVGAGLAGSEAAWTLLRLGVPVRLFEMRPKRM   37 (443)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTTSC
T ss_pred             CCEEEECchHHHHHHHHHHHHCCCcEEEEeccCCcC
Confidence            599999999999999999999999999999876433

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=98.33  E-value=2.4e-07  Score=85.28  Aligned_cols=57  Identities=9%  Similarity=-0.020  Sum_probs=46.5

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe-cCceEEcCEEEECCCCCcc
Q 020312          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLPN  290 (328)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~-~g~~~~ad~vV~~~~~~~~  290 (328)
                      ..+.+.+.+.+++.|+++++++.|+++... ++.+. |.. +++++.+|.|+++.+..|+
T Consensus       263 ~ei~~~l~~~l~~~gi~~~~~~~v~~~~~~-~~~~~-v~~~~~~~~~~D~vLvAvGR~Pn  320 (542)
T 4b1b_A          263 QQCAVKVKLYMEEQGVMFKNGILPKKLTKM-DDKIL-VEFSDKTSELYDTVLYAIGRKGD  320 (542)
T ss_dssp             HHHHHHHHHHHHHTTCEEEETCCEEEEEEE-TTEEE-EEETTSCEEEESEEEECSCEEES
T ss_pred             hhHHHHHHHHHHhhcceeecceEEEEEEec-CCeEE-EEEcCCCeEEEEEEEEcccccCC
Confidence            347788888899999999999999999987 66644 444 7788999999998876553

>3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae}

Probab=98.31  E-value=4.1e-07  Score=84.45  Aligned_cols=36  Identities=19%  Similarity=0.374  Sum_probs=33.1

Q ss_pred             CcccEEEECCChhHHHHHHhhhhCC-CeEEEeccCCC
Q 020312            3 EEYDVIVLGTGLKECILSGLLSVDG-LKVLHMDRNDY   38 (328)
Q Consensus         3 ~~~dvvIvG~G~aGl~aA~~L~~~G-~~V~vlE~~~~   38 (328)
                      ++||+||||||.||+++|..|++.| .+|+|||+...
T Consensus         5 ~~yDyIVVGgG~AG~v~A~rLse~~~~~VLllEaG~~   41 (577)
T 3q9t_A            5 SHFDFVIVGGGTAGNTVAGRLAENPNVTVLIVEAGIG   41 (577)
T ss_dssp             CEEEEEEESCSHHHHHHHHHHTTSTTSCEEEECSSCS
T ss_pred             CcccEEEECCcHHHHHHHHHHHhCCCCcEEEEecCCC
Confidence            4699999999999999999999998 79999999654

>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A*

Probab=98.31  E-value=2.2e-07  Score=85.55  Aligned_cols=56  Identities=16%  Similarity=0.181  Sum_probs=45.7

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe-cCceEEcCEEEECCCCC
Q 020312          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYL  288 (328)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~-~g~~~~ad~vV~~~~~~  288 (328)
                      ..+.+.|.+.+++.|++++++ +|++|..++++.++.|++ +|++++||.||.+.+..
T Consensus       173 ~~l~~~L~~~a~~~gv~~~~~-~v~~i~~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~  229 (511)
T 2weu_A          173 DEVARYLSEYAIARGVRHVVD-DVQHVGQDERGWISGVHTKQHGEISGDLFVDCTGFR  229 (511)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEC-CEEEEEECTTSCEEEEEESSSCEEECSEEEECCGGG
T ss_pred             HHHHHHHHHHHHHCCCEEEEC-eEeEEEEcCCCCEEEEEECCCCEEEcCEEEECCCcc
Confidence            457788888888899999999 999999864566777877 66689999999876653

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=98.31  E-value=3.8e-07  Score=82.47  Aligned_cols=55  Identities=20%  Similarity=0.202  Sum_probs=43.5

Q ss_pred             cHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEecCceEEcCEEEECCCCCcc
Q 020312          233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPN  290 (328)
Q Consensus       233 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~~g~~~~ad~vV~~~~~~~~  290 (328)
                      .+.+.+.+.+++. +++++++.|++|..+ + ++..+.++++++.||.||++++..|+
T Consensus       191 ~~~~~l~~~l~~~-v~i~~~~~v~~i~~~-~-~v~~v~~~g~~i~~D~Vv~a~G~~p~  245 (449)
T 3kd9_A          191 EVTDILEEKLKKH-VNLRLQEITMKIEGE-E-RVEKVVTDAGEYKAELVILATGIKPN  245 (449)
T ss_dssp             HHHHHHHHHHTTT-SEEEESCCEEEEECS-S-SCCEEEETTEEEECSEEEECSCEEEC
T ss_pred             HHHHHHHHHHHhC-cEEEeCCeEEEEecc-C-cEEEEEeCCCEEECCEEEEeeCCccC
Confidence            4566677777778 999999999999865 3 55556668889999999998887554

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=98.29  E-value=3.7e-07  Score=82.58  Aligned_cols=41  Identities=15%  Similarity=0.144  Sum_probs=38.0

Q ss_pred             CcccEEEECCChhHHHHHHhhhh-C------CCeEEEeccCCCCCCcc
Q 020312            3 EEYDVIVLGTGLKECILSGLLSV-D------GLKVLHMDRNDYYGGES   43 (328)
Q Consensus         3 ~~~dvvIvG~G~aGl~aA~~L~~-~------G~~V~vlE~~~~~GG~~   43 (328)
                      ..+||+|||||++|++||..|++ +      |.+|+|+|+.+.+||.+
T Consensus         2 ~~~~VvIIG~G~aGl~aA~~L~~~~~~~~~~g~~V~lie~~~~~gg~~   49 (456)
T 1lqt_A            2 RPYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLV   49 (456)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCSTHH
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhhCccccCCCCeEEEEecCCCCCCcc
Confidence            46899999999999999999999 7      99999999999999865

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=98.28  E-value=5.1e-07  Score=89.64  Aligned_cols=40  Identities=23%  Similarity=0.439  Sum_probs=37.5

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCC-eEEEeccCCCCCCcc
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGL-KVLHMDRNDYYGGES   43 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~-~V~vlE~~~~~GG~~   43 (328)
                      .+||+|||||++||+||.+|+++|+ +|+|+|+.+.+||..
T Consensus       187 ~~~VvVIGgGpAGl~aA~~L~~~G~~~Vtv~E~~~~~GG~~  227 (1025)
T 1gte_A          187 SAKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLS  227 (1025)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSCSTHH
T ss_pred             CCEEEEECccHHHHHHHHHHHhcCCCcEEEEeCCCCCCccc
Confidence            4799999999999999999999999 799999999999964

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=98.27  E-value=5.9e-07  Score=79.51  Aligned_cols=56  Identities=16%  Similarity=0.162  Sum_probs=45.7

Q ss_pred             cHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe-cCceEEcCEEEECCCCCcc
Q 020312          233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLPN  290 (328)
Q Consensus       233 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~-~g~~~~ad~vV~~~~~~~~  290 (328)
                      .+.+.+.+.+++.|++++++++|++|..+ ++. +.+++ +++++.||.||++++..|+
T Consensus       188 ~~~~~l~~~l~~~gv~i~~~~~v~~i~~~-~~~-~~v~~~~g~~i~~d~vv~a~G~~p~  244 (384)
T 2v3a_A          188 AAAKAVQAGLEGLGVRFHLGPVLASLKKA-GEG-LEAHLSDGEVIPCDLVVSAVGLRPR  244 (384)
T ss_dssp             HHHHHHHHHHHTTTCEEEESCCEEEEEEE-TTE-EEEEETTSCEEEESEEEECSCEEEC
T ss_pred             HHHHHHHHHHHHcCCEEEeCCEEEEEEec-CCE-EEEEECCCCEEECCEEEECcCCCcC
Confidence            46777888888999999999999999876 554 44555 7788999999998887665

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=98.26  E-value=5.7e-07  Score=82.85  Aligned_cols=40  Identities=23%  Similarity=0.476  Sum_probs=35.8

Q ss_pred             CcccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCccc
Q 020312            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (328)
Q Consensus         3 ~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~   44 (328)
                      ..+||+|||||++|++||.+|+++|++|+|+|+  .+||.+.
T Consensus       211 ~~~dVvIIGgG~AGl~aA~~la~~G~~v~lie~--~~GG~~~  250 (521)
T 1hyu_A          211 DAYDVLIVGSGPAGAAAAVYSARKGIRTGLMGE--RFGGQVL  250 (521)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECS--STTGGGT
T ss_pred             CcccEEEECCcHHHHHHHHHHHhCCCeEEEEEC--CCCCccc
Confidence            468999999999999999999999999999996  5777654

>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A*

Probab=98.24  E-value=6.6e-07  Score=82.98  Aligned_cols=36  Identities=36%  Similarity=0.508  Sum_probs=33.7

Q ss_pred             CcccEEEECCChhHHHHHHhhhhCCCeEEEeccCCC
Q 020312            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (328)
Q Consensus         3 ~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~   38 (328)
                      .++|+||||||.+|+++|.+|+++|.+|+|||++..
T Consensus         6 ~~~D~iIvG~G~aG~~~A~~L~~~g~~VlvlE~g~~   41 (546)
T 1kdg_A            6 TPYDYIIVGAGPGGIIAADRLSEAGKKVLLLERGGP   41 (546)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCC
T ss_pred             CceeEEEECcCHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence            369999999999999999999999999999999864

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=98.22  E-value=5.9e-07  Score=84.25  Aligned_cols=34  Identities=26%  Similarity=0.295  Sum_probs=31.9

Q ss_pred             CcccEEEECCChhHHHHHHhhhhCCCeEEEeccC
Q 020312            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRN   36 (328)
Q Consensus         3 ~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~   36 (328)
                      ..+||+|||||++|++||.+|+++|++|+|+|+.
T Consensus       106 ~~~dvvVIG~GpAGl~aA~~l~~~g~~v~liE~~  139 (598)
T 2x8g_A          106 YDYDLIVIGGGSGGLAAGKEAAKYGAKTAVLDYV  139 (598)
T ss_dssp             SSEEEEEECCSHHHHHHHHHHHHTTCCEEEECCC
T ss_pred             ccccEEEECCCccHHHHHHHHHhCCCeEEEEecc
Confidence            3689999999999999999999999999999983

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=98.21  E-value=8e-07  Score=81.28  Aligned_cols=56  Identities=20%  Similarity=0.157  Sum_probs=45.4

Q ss_pred             cHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe-cCceEEcCEEEECCCCCcc
Q 020312          233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLPN  290 (328)
Q Consensus       233 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~-~g~~~~ad~vV~~~~~~~~  290 (328)
                      .+.+.+.+.+++.|+++++++.|++|..+ ++.+ .|++ +|+++.||.||++++..|+
T Consensus       227 ~~~~~~~~~l~~~GV~v~~~~~V~~i~~~-~~~~-~v~l~dG~~i~aD~Vv~a~G~~pn  283 (493)
T 1m6i_A          227 YLSNWTMEKVRREGVKVMPNAIVQSVGVS-SGKL-LIKLKDGRKVETDHIVAAVGLEPN  283 (493)
T ss_dssp             HHHHHHHHHHHTTTCEEECSCCEEEEEEE-TTEE-EEEETTSCEEEESEEEECCCEEEC
T ss_pred             HHHHHHHHHHHhcCCEEEeCCEEEEEEec-CCeE-EEEECCCCEEECCEEEECCCCCcc
Confidence            35667777888999999999999999876 5554 5665 7889999999998887654

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=98.21  E-value=8.6e-07  Score=82.99  Aligned_cols=55  Identities=9%  Similarity=0.016  Sum_probs=44.2

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe-cCceEEcCEEEECCCCCcc
Q 020312          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLPN  290 (328)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~-~g~~~~ad~vV~~~~~~~~  290 (328)
                      ..+.+.+.+.+++.|++++++++|++|..+ ++.   |+. +++++.||.||++++..|+
T Consensus       228 ~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~-~~~---v~~~~g~~i~~D~Vi~a~G~~p~  283 (588)
T 3ics_A          228 YEMAAYVHEHMKNHDVELVFEDGVDALEEN-GAV---VRLKSGSVIQTDMLILAIGVQPE  283 (588)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEGG-GTE---EEETTSCEEECSEEEECSCEEEC
T ss_pred             HHHHHHHHHHHHHcCCEEEECCeEEEEecC-CCE---EEECCCCEEEcCEEEEccCCCCC
Confidence            346777888889999999999999999865 443   444 7789999999998887554

>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A*

Probab=98.20  E-value=1e-06  Score=83.40  Aligned_cols=36  Identities=28%  Similarity=0.383  Sum_probs=33.6

Q ss_pred             cccEEEECCChhHHHHHHhhhh-----CCCeEEEeccCCCC
Q 020312            4 EYDVIVLGTGLKECILSGLLSV-----DGLKVLHMDRNDYY   39 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~-----~G~~V~vlE~~~~~   39 (328)
                      ++||+|||||++||++|..|++     +|.+|+|+|+++.+
T Consensus         8 ~~dVlIVGaGpaGL~lA~~La~~~~~~~Gi~v~viE~~~~~   48 (665)
T 1pn0_A            8 YCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTK   48 (665)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSSC
T ss_pred             CCcEEEECcCHHHHHHHHHHhccccccCCCCEEEEeCCCCC
Confidence            5899999999999999999999     99999999998654

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=98.16  E-value=1.3e-06  Score=77.98  Aligned_cols=52  Identities=23%  Similarity=0.204  Sum_probs=42.8

Q ss_pred             cHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe-cCceEEcCEEEECCCCCcc
Q 020312          233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLPN  290 (328)
Q Consensus       233 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~-~g~~~~ad~vV~~~~~~~~  290 (328)
                      .+.+.+.+.+++.|++++++++|++|. + +    .|++ +|+++.||.||++++..|+
T Consensus       188 ~~~~~l~~~l~~~GV~i~~~~~v~~i~-~-~----~v~~~~g~~i~~D~vi~a~G~~p~  240 (408)
T 2gqw_A          188 TLADFVARYHAAQGVDLRFERSVTGSV-D-G----VVLLDDGTRIAADMVVVGIGVLAN  240 (408)
T ss_dssp             HHHHHHHHHHHHTTCEEEESCCEEEEE-T-T----EEEETTSCEEECSEEEECSCEEEC
T ss_pred             HHHHHHHHHHHHcCcEEEeCCEEEEEE-C-C----EEEECCCCEEEcCEEEECcCCCcc
Confidence            466777788889999999999999998 5 4    3555 7788999999999887665

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=98.15  E-value=1.3e-06  Score=79.01  Aligned_cols=41  Identities=15%  Similarity=0.037  Sum_probs=37.3

Q ss_pred             CcccEEEECCChhHHHHHHhhhhCC--CeEEEeccCCCCCCcc
Q 020312            3 EEYDVIVLGTGLKECILSGLLSVDG--LKVLHMDRNDYYGGES   43 (328)
Q Consensus         3 ~~~dvvIvG~G~aGl~aA~~L~~~G--~~V~vlE~~~~~GG~~   43 (328)
                      ..+||+|||||++|++||..|++.|  .+|+|+|+.+.+||..
T Consensus         5 ~~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~vie~~~~~gg~~   47 (460)
T 1cjc_A            5 QTPQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLV   47 (460)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSCTHH
T ss_pred             CCceEEEECcCHHHHHHHHHHHhcCCCCCEEEEeCCCcCCcee
Confidence            3589999999999999999999998  9999999999998754

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*

Probab=98.15  E-value=1.3e-06  Score=78.78  Aligned_cols=39  Identities=26%  Similarity=0.401  Sum_probs=35.5

Q ss_pred             CCCcccEEEECCChhHHHHHHhhhh---CCCeEEEeccCCCC
Q 020312            1 MDEEYDVIVLGTGLKECILSGLLSV---DGLKVLHMDRNDYY   39 (328)
Q Consensus         1 ~~~~~dvvIvG~G~aGl~aA~~L~~---~G~~V~vlE~~~~~   39 (328)
                      |+...||+|||||++|++||.+|++   .|++|+|+|+++..
T Consensus         1 M~~m~~vvIIGgG~aGl~aA~~L~~~~~~g~~Vtlie~~~~~   42 (437)
T 3sx6_A            1 MRGSAHVVILGAGTGGMPAAYEMKEALGSGHEVTLISANDYF   42 (437)
T ss_dssp             CTTSCEEEEECCSTTHHHHHHHHHHHHGGGSEEEEECSSSEE
T ss_pred             CCCCCcEEEECCcHHHHHHHHHHhccCCCcCEEEEEeCCCCC
Confidence            5556799999999999999999999   89999999998864

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*

Probab=98.15  E-value=8.4e-07  Score=79.18  Aligned_cols=53  Identities=17%  Similarity=0.177  Sum_probs=42.6

Q ss_pred             cHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe-cCceEEcCEEEECCCCCcch
Q 020312          233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLPNK  291 (328)
Q Consensus       233 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~-~g~~~~ad~vV~~~~~~~~~  291 (328)
                      .+.+.+.+.+++.|++++++++|++|..+   .   |++ +|+++.||.||++++..|+.
T Consensus       219 ~~~~~~~~~l~~~gV~~~~~~~v~~i~~~---~---v~~~~g~~~~~D~vi~a~G~~~~~  272 (409)
T 3h8l_A          219 NSRKAVASIYNQLGIKLVHNFKIKEIREH---E---IVDEKGNTIPADITILLPPYTGNP  272 (409)
T ss_dssp             HHHHHHHHHHHHHTCEEECSCCEEEECSS---E---EEETTSCEEECSEEEEECCEECCH
T ss_pred             HHHHHHHHHHHHCCCEEEcCCceEEECCC---e---EEECCCCEEeeeEEEECCCCCccH
Confidence            56777888889999999999999999643   2   444 78899999999888776543

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=98.11  E-value=1.6e-06  Score=78.27  Aligned_cols=56  Identities=20%  Similarity=0.180  Sum_probs=44.8

Q ss_pred             cHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEecCceEEcCEEEECCCCCcc
Q 020312          233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPN  290 (328)
Q Consensus       233 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~~g~~~~ad~vV~~~~~~~~  290 (328)
                      .+.+.+.+.+++.|++++++++|++|..+  ++++.+.++++++.||.||++++..|+
T Consensus       192 ~~~~~l~~~l~~~gv~i~~~~~v~~i~~~--~~v~~v~~~~~~i~~d~vi~a~G~~p~  247 (447)
T 1nhp_A          192 EFTDVLTEEMEANNITIATGETVERYEGD--GRVQKVVTDKNAYDADLVVVAVGVRPN  247 (447)
T ss_dssp             HHHHHHHHHHHTTTEEEEESCCEEEEECS--SBCCEEEESSCEEECSEEEECSCEEES
T ss_pred             HHHHHHHHHHHhCCCEEEcCCEEEEEEcc--CcEEEEEECCCEEECCEEEECcCCCCC
Confidence            46677778888899999999999999865  444456667788999999988876554

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*

Probab=98.08  E-value=1.8e-06  Score=78.95  Aligned_cols=56  Identities=18%  Similarity=0.222  Sum_probs=44.8

Q ss_pred             cHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEecCceEEcCEEEECCCCCcc
Q 020312          233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPN  290 (328)
Q Consensus       233 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~~g~~~~ad~vV~~~~~~~~  290 (328)
                      .+.+.+.+.+++.|++++++++|++|..  ++++..++++++++.||.||++++..|+
T Consensus       237 ~~~~~l~~~l~~~GV~i~~~~~v~~i~~--~~~v~~v~~~g~~i~~D~Vi~a~G~~p~  292 (490)
T 2bc0_A          237 DLTDLMAKNMEEHGIQLAFGETVKEVAG--NGKVEKIITDKNEYDVDMVILAVGFRPN  292 (490)
T ss_dssp             HHHHHHHHHHHTTTCEEEETCCEEEEEC--SSSCCEEEESSCEEECSEEEECCCEEEC
T ss_pred             HHHHHHHHHHHhCCeEEEeCCEEEEEEc--CCcEEEEEECCcEEECCEEEECCCCCcC
Confidence            4667777888899999999999999985  3455556668889999999998877554

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=98.06  E-value=2.4e-06  Score=77.90  Aligned_cols=56  Identities=14%  Similarity=0.106  Sum_probs=45.9

Q ss_pred             cHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEecCceEEcCEEEECCCCCcc
Q 020312          233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPN  290 (328)
Q Consensus       233 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~~g~~~~ad~vV~~~~~~~~  290 (328)
                      .+.+.+.+.+++.|++++++++|++|..+  +++..+.++++++.||.||++++..|+
T Consensus       228 ~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~--~~v~~v~~~~~~i~~D~vi~a~G~~p~  283 (480)
T 3cgb_A          228 DMAEYIYKEADKHHIEILTNENVKAFKGN--ERVEAVETDKGTYKADLVLVSVGVKPN  283 (480)
T ss_dssp             HHHHHHHHHHHHTTCEEECSCCEEEEEES--SBEEEEEETTEEEECSEEEECSCEEES
T ss_pred             HHHHHHHHHHHHcCcEEEcCCEEEEEEcC--CcEEEEEECCCEEEcCEEEECcCCCcC
Confidence            46677888889999999999999999865  456667777778999999998877553

>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii}

Probab=98.06  E-value=1.9e-06  Score=79.81  Aligned_cols=36  Identities=19%  Similarity=0.370  Sum_probs=33.4

Q ss_pred             cccEEEECCChhHHHHHHhhhh-CCCeEEEeccCCCC
Q 020312            4 EYDVIVLGTGLKECILSGLLSV-DGLKVLHMDRNDYY   39 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~-~G~~V~vlE~~~~~   39 (328)
                      +||+||||||.+|+++|.+|++ .|.+|+|||+....
T Consensus         2 ~yD~IIVG~G~aG~v~A~rLse~~~~~VlllEaG~~~   38 (566)
T 3fim_B            2 DFDYVVVGAGNAGNVVAARLTEDPDVSVLVLEAGVSD   38 (566)
T ss_dssp             CEEEEESCCSTTHHHHHHHHTTSTTCCEEEECSSBCC
T ss_pred             CcCEEEECCcHHHHHHHHHHHhCcCCcEEEEecCCcc
Confidence            6899999999999999999998 78999999997655

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.05  E-value=3e-06  Score=74.45  Aligned_cols=35  Identities=23%  Similarity=0.214  Sum_probs=32.7

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYG   40 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~G   40 (328)
                      .||+|||||++|++||..|++.| +|+|+|+++..+
T Consensus         9 ~~vvIIGgG~AGl~aA~~l~~~g-~V~lie~~~~~~   43 (367)
T 1xhc_A            9 SKVVIVGNGPGGFELAKQLSQTY-EVTVIDKEPVPY   43 (367)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTTS-EEEEECSSSSCC
T ss_pred             CcEEEECCcHHHHHHHHHHhhcC-CEEEEECCCCCc
Confidence            69999999999999999999999 999999988653

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=98.05  E-value=2.6e-06  Score=79.28  Aligned_cols=58  Identities=16%  Similarity=0.149  Sum_probs=45.0

Q ss_pred             cHHHHHHHHHHHcCcEEEcCcceeEEEec------------------CCCcEEEEEecCceEEcCEEEECCCCCcc
Q 020312          233 ELPQAFARLSAVYGGTYMLNKPECKVEFD------------------EEGKVVGVTSEGETAKCKKVVCDPSYLPN  290 (328)
Q Consensus       233 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~------------------~~~~v~~v~~~g~~~~ad~vV~~~~~~~~  290 (328)
                      .+.+.+.+.+++.|+++++++.|++|..+                  +++++..+..+++++.||.||++++..|+
T Consensus       193 ~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~  268 (565)
T 3ntd_A          193 EMAGFAHQAIRDQGVDLRLGTALSEVSYQVQTHVASDAAGEDTAHQHIKGHLSLTLSNGELLETDLLIMAIGVRPE  268 (565)
T ss_dssp             HHHHHHHHHHHHTTCEEEETCCEEEEEEECCCCCCCGGGTCCCTTCCTTCEEEEEETTSCEEEESEEEECSCEEEC
T ss_pred             HHHHHHHHHHHHCCCEEEeCCeEEEEeccccccccccccccccccccCCCcEEEEEcCCCEEEcCEEEECcCCccc
Confidence            46677777888999999999999999872                  14554433347889999999999887654

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=98.02  E-value=4.6e-06  Score=73.70  Aligned_cols=39  Identities=10%  Similarity=0.133  Sum_probs=35.6

Q ss_pred             CcccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCC
Q 020312            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG   41 (328)
Q Consensus         3 ~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG   41 (328)
                      ++.+|+|||||++|++||..|...|.+|+|+|+++..+.
T Consensus         8 ~~~~~vIvGgG~AGl~aA~~L~~~~~~itlie~~~~~~y   46 (385)
T 3klj_A            8 KSTKILILGAGPAGFSAAKAALGKCDDITMINSEKYLPY   46 (385)
T ss_dssp             CBCSEEEECCSHHHHHHHHHHTTTCSCEEEECSSSSCCB
T ss_pred             CCCCEEEEcCcHHHHHHHHHHhCCCCEEEEEECCCCCCc
Confidence            358999999999999999999888999999999988764

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=97.94  E-value=5.4e-05  Score=68.30  Aligned_cols=34  Identities=26%  Similarity=0.286  Sum_probs=31.5

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~   38 (328)
                      .+++|||||.+|+-+|..|++.|.+|+|+|++++
T Consensus       168 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~  201 (450)
T 1ges_A          168 ERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDA  201 (450)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCEEEEEEeCCc
Confidence            5799999999999999999999999999998654

>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*

Probab=97.84  E-value=9.2e-06  Score=72.92  Aligned_cols=55  Identities=18%  Similarity=0.162  Sum_probs=39.2

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe-c--CceEEcCEEEECCCCCcc
Q 020312          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-E--GETAKCKKVVCDPSYLPN  290 (328)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~-~--g~~~~ad~vV~~~~~~~~  290 (328)
                      ....+.+.+.++++|+++++++.|++|+   +++++ ++. +  ++++.||.||.+++..++
T Consensus       200 ~~~~~~l~~~l~~~GV~~~~~~~v~~v~---~~~~~-~~~~~g~~~~i~~d~vi~~~G~~~~  257 (430)
T 3hyw_A          200 GASKRLVEDLFAERNIDWIANVAVKAIE---PDKVI-YEDLNGNTHEVPAKFTMFMPSFQGP  257 (430)
T ss_dssp             TTHHHHHHHHHHHTTCEEECSCEEEEEC---SSEEE-EECTTSCEEEEECSEEEEECEEECC
T ss_pred             HHHHHHHHHHHHhCCeEEEeCceEEEEe---CCceE-EEeeCCCceEeecceEEEeccCCCc
Confidence            4455666677888999999999999995   33433 333 3  357999999887765443

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=97.83  E-value=1.1e-05  Score=73.78  Aligned_cols=35  Identities=17%  Similarity=0.323  Sum_probs=32.6

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEeccCCC
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~   38 (328)
                      +.+|||||||.+|+++|..|.+++++|+|+|++++
T Consensus        42 KprVVIIGgG~AGl~~A~~L~~~~~~VtLId~~~~   76 (502)
T 4g6h_A           42 KPNVLILGSGWGAISFLKHIDTKKYNVSIISPRSY   76 (502)
T ss_dssp             SCEEEEECSSHHHHHHHHHSCTTTCEEEEEESSSE
T ss_pred             CCCEEEECCcHHHHHHHHHhhhCCCcEEEECCCCC
Confidence            46899999999999999999999999999999874

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=97.83  E-value=1.1e-05  Score=72.59  Aligned_cols=53  Identities=15%  Similarity=0.160  Sum_probs=42.3

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe-cCceEEcCEEEECCCCCcc
Q 020312          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLPN  290 (328)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~-~g~~~~ad~vV~~~~~~~~  290 (328)
                      ..+.+.+.+.+++.|+++++++.|++++.+   .   ++. +++++.+|.||++.+..|+
T Consensus       188 ~~~~~~~~~~l~~~gV~i~~~~~v~~~~~~---~---v~~~~g~~~~~D~vl~a~G~~Pn  241 (437)
T 4eqs_A          188 ADMNQPILDELDKREIPYRLNEEINAINGN---E---ITFKSGKVEHYDMIIEGVGTHPN  241 (437)
T ss_dssp             GGGGHHHHHHHHHTTCCEEESCCEEEEETT---E---EEETTSCEEECSEEEECCCEEES
T ss_pred             chhHHHHHHHhhccceEEEeccEEEEecCC---e---eeecCCeEEeeeeEEEEeceecC
Confidence            457778888899999999999999998633   2   334 8889999999988876553

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=97.77  E-value=0.00015  Score=66.00  Aligned_cols=34  Identities=24%  Similarity=0.304  Sum_probs=31.4

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~   38 (328)
                      -+++|||||..|+-+|..|++.|.+|+++|++++
T Consensus       186 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~  219 (479)
T 2hqm_A          186 KKVVVVGAGYIGIELAGVFHGLGSETHLVIRGET  219 (479)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCceEEEEeCCc
Confidence            5799999999999999999999999999998654

>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*

Probab=97.76  E-value=1.5e-05  Score=70.75  Aligned_cols=47  Identities=17%  Similarity=0.053  Sum_probs=36.5

Q ss_pred             HHHcCcEEEcCcceeEEEecCCCcEEEEEe-cCceEEcCEEEECCCCCcc
Q 020312          242 SAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLPN  290 (328)
Q Consensus       242 ~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~-~g~~~~ad~vV~~~~~~~~  290 (328)
                      +++.|+++++++.+..++.+ ++... +++ +|+++.||.||++++..|+
T Consensus       212 l~~~gi~v~~~~~v~~v~~~-~~~~~-v~~~~g~~i~~D~vi~~~g~~~~  259 (401)
T 3vrd_B          212 TENALIEWHPGPDAAVVKTD-TEAMT-VETSFGETFKAAVINLIPPQRAG  259 (401)
T ss_dssp             STTCSEEEECTTTTCEEEEE-TTTTE-EEETTSCEEECSEEEECCCEEEC
T ss_pred             HHhcCcEEEeCceEEEEEec-ccceE-EEcCCCcEEEeeEEEEecCcCCc
Confidence            45679999999999999987 44433 455 8889999999988776544

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.75  E-value=0.00025  Score=64.83  Aligned_cols=34  Identities=15%  Similarity=0.262  Sum_probs=31.4

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~   38 (328)
                      -+++|||||.+|+-+|..|++.|.+|+|+|++++
T Consensus       177 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~  210 (500)
T 1onf_A          177 KKIGIVGSGYIAVELINVIKRLGIDSYIFARGNR  210 (500)
T ss_dssp             SEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSS
T ss_pred             CeEEEECChHHHHHHHHHHHHcCCeEEEEecCCc
Confidence            4799999999999999999999999999998654

>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*

Probab=97.35  E-value=2.9e-05  Score=71.05  Aligned_cols=33  Identities=15%  Similarity=0.100  Sum_probs=24.8

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~   37 (328)
                      +||||||+|++||++|..|.++|...+++|+.+
T Consensus        40 ~Dvi~IGaGp~gLa~A~~L~~~~~~~~~~~~~~   72 (501)
T 4b63_A           40 HDLLCVGFGPASLAIAIALHDALDPRLNKSASN   72 (501)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHCTTTCTTC--
T ss_pred             CcEEEEcccHHHHHHHHHHHhcCCCceEEeccc
Confidence            799999999999999999987654433333333

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=97.04  E-value=0.00062  Score=61.26  Aligned_cols=39  Identities=28%  Similarity=0.290  Sum_probs=35.6

Q ss_pred             CcccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCC
Q 020312            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG   41 (328)
Q Consensus         3 ~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG   41 (328)
                      ...+++|||||.+|+.+|..|++.|.+|+|+|+++.+..
T Consensus       148 ~~~~vvIiG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~l~  186 (447)
T 1nhp_A          148 EVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLG  186 (447)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTT
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCccccc
Confidence            357899999999999999999999999999999887655

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=96.97  E-value=0.00058  Score=60.19  Aligned_cols=38  Identities=13%  Similarity=0.034  Sum_probs=35.2

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCc
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGE   42 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~   42 (328)
                      .+|+|||||.+|+-+|..|++.|.+|+|+|+++++..+
T Consensus       147 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtvv~~~~~~l~~  184 (385)
T 3klj_A          147 GKAFIIGGGILGIELAQAIIDSGTPASIGIILEYPLER  184 (385)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSSCTT
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCeEEEEEcCCccchh
Confidence            47999999999999999999999999999999887665

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=96.95  E-value=0.00072  Score=57.59  Aligned_cols=36  Identities=22%  Similarity=0.164  Sum_probs=33.3

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYG   40 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~G   40 (328)
                      .+|+|||||..|+-+|..|++.|.+|+|+|+++++-
T Consensus       146 k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~~  181 (312)
T 4gcm_A          146 KRLFVIGGGDSAVEEGTFLTKFADKVTIVHRRDELR  181 (312)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTTCSEEEEECSSSSCC
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCEEEEEecccccC
Confidence            479999999999999999999999999999988763

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=96.94  E-value=0.00078  Score=49.81  Aligned_cols=33  Identities=24%  Similarity=0.344  Sum_probs=30.4

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEeccC
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRN   36 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~   36 (328)
                      .++|+|+|+|..|...|..|.+.|++|+++|++
T Consensus         4 ~m~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~~   36 (140)
T 1lss_A            4 GMYIIIAGIGRVGYTLAKSLSEKGHDIVLIDID   36 (140)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECC
Confidence            468999999999999999999999999999984

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=96.82  E-value=0.0012  Score=50.05  Aligned_cols=34  Identities=24%  Similarity=0.485  Sum_probs=31.4

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~   37 (328)
                      ...|+|+|+|..|...|..|.+.|++|++++++.
T Consensus        19 ~~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~   52 (155)
T 2g1u_A           19 SKYIVIFGCGRLGSLIANLASSSGHSVVVVDKNE   52 (155)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCG
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            4689999999999999999999999999999864

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=96.79  E-value=0.00095  Score=60.26  Aligned_cols=37  Identities=16%  Similarity=0.101  Sum_probs=34.4

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG   41 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG   41 (328)
                      .+++|||||.+|+-+|..|++.|.+|+|+|+++++..
T Consensus       172 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~  208 (458)
T 1lvl_A          172 QHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERILP  208 (458)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSST
T ss_pred             CeEEEECcCHHHHHHHHHHHHCCCeEEEEEcCCcccc
Confidence            5799999999999999999999999999999988754

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=96.76  E-value=0.0011  Score=59.86  Aligned_cols=37  Identities=16%  Similarity=0.088  Sum_probs=34.1

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG   41 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG   41 (328)
                      .+++|||||.+|+-+|..|++.|.+|+|+|+++++..
T Consensus       170 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~  206 (464)
T 2eq6_A          170 KRLLVIGGGAVGLELGQVYRRLGAEVTLIEYMPEILP  206 (464)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSST
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEEcCCcccc
Confidence            5799999999999999999999999999999887654

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=96.72  E-value=0.0013  Score=59.38  Aligned_cols=36  Identities=22%  Similarity=0.201  Sum_probs=33.3

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYG   40 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~G   40 (328)
                      .+++|||||.+|+.+|..|++.|.+|+|+|+++++.
T Consensus       168 ~~vvIiGgG~~g~e~A~~l~~~g~~V~lv~~~~~~l  203 (455)
T 2yqu_A          168 KRLIVVGGGVIGLELGVVWHRLGAEVIVLEYMDRIL  203 (455)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSC
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCEEEEEecCCccc
Confidence            579999999999999999999999999999988754

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=96.71  E-value=0.0015  Score=57.44  Aligned_cols=39  Identities=23%  Similarity=0.310  Sum_probs=35.3

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCc
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGE   42 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~   42 (328)
                      ..+++|||||.+|+-+|..|++.|.+|+|+|+++++...
T Consensus       145 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~  183 (384)
T 2v3a_A          145 KRRVLLLGAGLIGCEFANDLSSGGYQLDVVAPCEQVMPG  183 (384)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTT
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCcchhhc
Confidence            458999999999999999999999999999998876554

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=96.69  E-value=0.0017  Score=54.59  Aligned_cols=37  Identities=30%  Similarity=0.334  Sum_probs=33.7

Q ss_pred             CCCcccEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312            1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (328)
Q Consensus         1 ~~~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~   37 (328)
                      |+.-.+|.|||+|..|...|..|+++|++|++++++.
T Consensus         1 Mm~~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~   37 (283)
T 4e12_A            1 MTGITNVTVLGTGVLGSQIAFQTAFHGFAVTAYDINT   37 (283)
T ss_dssp             CCSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence            6656789999999999999999999999999999864

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=96.69  E-value=0.0014  Score=57.38  Aligned_cols=37  Identities=27%  Similarity=0.440  Sum_probs=34.2

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG   41 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG   41 (328)
                      .+++|||||.+|+-+|..|++.|.+|+++|+++++..
T Consensus       144 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~  180 (367)
T 1xhc_A          144 GEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMFLG  180 (367)
T ss_dssp             SEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSCCTT
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCEEEEEeCCCeecc
Confidence            5799999999999999999999999999999887654

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=96.68  E-value=0.0014  Score=59.11  Aligned_cols=38  Identities=18%  Similarity=0.144  Sum_probs=34.5

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCC
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG   41 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG   41 (328)
                      ..+++|||||.+|+-+|..|++.|.+|+|+|+++++..
T Consensus       170 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~  207 (455)
T 1ebd_A          170 PKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEILS  207 (455)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSST
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcccc
Confidence            35899999999999999999999999999999887654

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=96.66  E-value=0.0021  Score=48.47  Aligned_cols=33  Identities=18%  Similarity=0.088  Sum_probs=31.1

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEeccC
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRN   36 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~   36 (328)
                      +.+|+|+|+|-.|...|..|.+.|++|+++|++
T Consensus         3 ~~~vlI~G~G~vG~~la~~L~~~g~~V~vid~~   35 (153)
T 1id1_A            3 KDHFIVCGHSILAINTILQLNQRGQNVTVISNL   35 (153)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTCCEEEEECC
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEECC
Confidence            568999999999999999999999999999985

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=96.64  E-value=0.0019  Score=47.94  Aligned_cols=33  Identities=33%  Similarity=0.498  Sum_probs=30.7

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~   37 (328)
                      ..|+|+|+|-.|...|..|.++|++|+++|++.
T Consensus         7 ~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~~   39 (141)
T 3llv_A            7 YEYIVIGSEAAGVGLVRELTAAGKKVLAVDKSK   39 (141)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence            479999999999999999999999999999853

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=96.64  E-value=0.0018  Score=48.12  Aligned_cols=33  Identities=12%  Similarity=0.289  Sum_probs=31.0

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~   37 (328)
                      -+|+|+|.|-.|...|..|.+.|++|+++|++.
T Consensus         8 ~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~   40 (140)
T 3fwz_A            8 NHALLVGYGRVGSLLGEKLLASDIPLVVIETSR   40 (140)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCH
Confidence            579999999999999999999999999999854

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=96.64  E-value=0.0017  Score=58.89  Aligned_cols=37  Identities=19%  Similarity=0.251  Sum_probs=34.6

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG   41 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG   41 (328)
                      .+++|||||.+|+-+|..|++.|.+|+|+|+++++..
T Consensus       184 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~  220 (478)
T 1v59_A          184 KRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIGA  220 (478)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSS
T ss_pred             ceEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCcccc
Confidence            5799999999999999999999999999999988765

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=96.61  E-value=0.0016  Score=56.59  Aligned_cols=36  Identities=31%  Similarity=0.361  Sum_probs=31.4

Q ss_pred             CCCcccEEEECCChhHHHHHHhhhhCCCeEEEeccC
Q 020312            1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRN   36 (328)
Q Consensus         1 ~~~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~   36 (328)
                      ||+.++|+|||+|..|...|..|+++|++|++++++
T Consensus         1 mm~~mki~iiG~G~~G~~~a~~L~~~g~~V~~~~r~   36 (359)
T 1bg6_A            1 MIESKTYAVLGLGNGGHAFAAYLALKGQSVLAWDID   36 (359)
T ss_dssp             ---CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             CCCcCeEEEECCCHHHHHHHHHHHhCCCEEEEEeCC
Confidence            666789999999999999999999999999999885

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=96.60  E-value=0.0021  Score=54.59  Aligned_cols=35  Identities=26%  Similarity=0.279  Sum_probs=32.1

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY   39 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~   39 (328)
                      .+++|||||..|+-+|..|++.|.+|+|+|+.+..
T Consensus       153 ~~vvViGgG~ig~e~A~~l~~~G~~Vt~v~~~~~~  187 (314)
T 4a5l_A          153 KVLMVVGGGDAAMEEALHLTKYGSKVIILHRRDAF  187 (314)
T ss_dssp             SEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSC
T ss_pred             CeEEEECCChHHHHHHHHHHHhCCeeeeecccccc
Confidence            57999999999999999999999999999986653

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=96.50  E-value=0.0031  Score=55.96  Aligned_cols=39  Identities=13%  Similarity=0.227  Sum_probs=35.3

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCc
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGE   42 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~   42 (328)
                      ..+|+|||||.+|+-+|..|++.|.+|+++|+++++..+
T Consensus       145 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~  183 (408)
T 2gqw_A          145 QSRLLIVGGGVIGLELAATARTAGVHVSLVETQPRLMSR  183 (408)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTT
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCEEEEEEeCCccccc
Confidence            368999999999999999999999999999999876553

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=96.45  E-value=0.0029  Score=45.08  Aligned_cols=32  Identities=22%  Similarity=0.447  Sum_probs=29.9

Q ss_pred             ccEEEECCChhHHHHHHhhhhCC-CeEEEeccC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDG-LKVLHMDRN   36 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G-~~V~vlE~~   36 (328)
                      .+|+|+|+|..|..+|..|.+.| ++|++++++
T Consensus         6 ~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~   38 (118)
T 3ic5_A            6 WNICVVGAGKIGQMIAALLKTSSNYSVTVADHD   38 (118)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCSSEEEEEEESC
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCceEEEEeCC
Confidence            57999999999999999999999 999999984

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=96.43  E-value=0.0026  Score=57.48  Aligned_cols=36  Identities=28%  Similarity=0.293  Sum_probs=33.4

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYG   40 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~G   40 (328)
                      -+++|||||.+|+-+|..|++.|.+|+|+|+++++.
T Consensus       167 ~~vvVvGgG~~g~e~A~~l~~~G~~Vtlv~~~~~~l  202 (463)
T 2r9z_A          167 KRVAIIGAGYIGIELAGLLRSFGSEVTVVALEDRLL  202 (463)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCccc
Confidence            479999999999999999999999999999987754

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=96.40  E-value=0.0026  Score=54.13  Aligned_cols=33  Identities=27%  Similarity=0.406  Sum_probs=30.9

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~   37 (328)
                      -+|+|||+|..|...|..++++|++|+++|.+.
T Consensus         7 ~~VaViGaG~MG~giA~~~a~~G~~V~l~D~~~   39 (319)
T 3ado_A            7 GDVLIVGSGLVGRSWAMLFASGGFRVKLYDIEP   39 (319)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEECSCH
T ss_pred             CeEEEECCcHHHHHHHHHHHhCCCeEEEEECCH
Confidence            579999999999999999999999999999764

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=96.34  E-value=0.0031  Score=53.92  Aligned_cols=37  Identities=24%  Similarity=0.357  Sum_probs=34.0

Q ss_pred             CCCcccEEEECCChhHHHHHHhhhhCCC-eEEEeccCC
Q 020312            1 MDEEYDVIVLGTGLKECILSGLLSVDGL-KVLHMDRND   37 (328)
Q Consensus         1 ~~~~~dvvIvG~G~aGl~aA~~L~~~G~-~V~vlE~~~   37 (328)
                      |....+|+|||+|..|.+.|..|+++|+ +|++++.+.
T Consensus         1 M~~~~kI~VIGaG~~G~~ia~~la~~g~~~V~l~D~~~   38 (317)
T 2ewd_A            1 MIERRKIAVIGSGQIGGNIAYIVGKDNLADVVLFDIAE   38 (317)
T ss_dssp             CCCCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCCc
Confidence            6667899999999999999999999998 999999864

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=96.31  E-value=0.0035  Score=53.66  Aligned_cols=33  Identities=30%  Similarity=0.495  Sum_probs=31.1

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~   37 (328)
                      ++|+|||+|..|.+.|..|+++|++|+++.++.
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~   35 (320)
T 3i83_A            3 LNILVIGTGAIGSFYGALLAKTGHCVSVVSRSD   35 (320)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHTTCEEEEECSTT
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCh
Confidence            589999999999999999999999999999865

>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*

Probab=96.30  E-value=0.0026  Score=57.00  Aligned_cols=37  Identities=19%  Similarity=0.226  Sum_probs=33.3

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCC
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYG   40 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~G   40 (328)
                      ..+|.|||.|.+|+++|..|+++|++|++.|.++..-
T Consensus         5 ~~~v~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~~   41 (439)
T 2x5o_A            5 GKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPP   41 (439)
T ss_dssp             TCCEEEECCHHHHHHHHHHHHTTTCCCEEEESSSSCT
T ss_pred             CCEEEEEeecHHHHHHHHHHHhCCCEEEEEECCCCcc
Confidence            4579999999999999999999999999999987543

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=96.30  E-value=0.0023  Score=58.14  Aligned_cols=38  Identities=29%  Similarity=0.336  Sum_probs=34.7

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCC
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG   41 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG   41 (328)
                      ..+|+|||||.+|+-+|..|++.|.+|+|+|+++.+..
T Consensus       186 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~  223 (480)
T 3cgb_A          186 VEDVTIIGGGAIGLEMAETFVELGKKVRMIERNDHIGT  223 (480)
T ss_dssp             CCEEEEECCHHHHHHHHHHHHHTTCEEEEECCGGGTTS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeCCchhh
Confidence            46899999999999999999999999999999887654

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*

Probab=96.29  E-value=0.0033  Score=57.22  Aligned_cols=38  Identities=24%  Similarity=0.222  Sum_probs=34.5

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCC
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG   41 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG   41 (328)
                      ..+|+|||||.+|+-+|..|++.|.+|+|+|+++++-.
T Consensus       194 ~~~vvVIGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~  231 (490)
T 2bc0_A          194 IKRVAVVGAGYIGVELAEAFQRKGKEVVLIDVVDTCLA  231 (490)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTT
T ss_pred             CceEEEECCCHHHHHHHHHHHHCCCeEEEEEcccchhh
Confidence            35799999999999999999999999999999887654

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=96.27  E-value=0.0036  Score=56.72  Aligned_cols=37  Identities=22%  Similarity=0.309  Sum_probs=34.3

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG   41 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG   41 (328)
                      .+++|||||.+|+-+|..|++.|.+|+|+|+++++..
T Consensus       179 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~  215 (474)
T 1zmd_A          179 EKMVVIGAGVIGVELGSVWQRLGADVTAVEFLGHVGG  215 (474)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSC
T ss_pred             ceEEEECCCHHHHHHHHHHHHcCCEEEEEeccCccCC
Confidence            5799999999999999999999999999999987655

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=96.26  E-value=0.0043  Score=52.61  Aligned_cols=33  Identities=24%  Similarity=0.415  Sum_probs=30.5

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~   37 (328)
                      .+|.|||+|..|...|..|+++|++|++++++.
T Consensus        16 ~~I~VIG~G~mG~~iA~~la~~G~~V~~~d~~~   48 (302)
T 1f0y_A           16 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTE   48 (302)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            469999999999999999999999999999863

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=96.25  E-value=0.0042  Score=56.56  Aligned_cols=38  Identities=26%  Similarity=0.220  Sum_probs=34.7

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCc
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGE   42 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~   42 (328)
                      -+++|||||.+|+-+|..|++.|.+|+++|+++++...
T Consensus       175 k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~  212 (492)
T 3ic9_A          175 KSVAVFGPGVIGLELGQALSRLGVIVKVFGRSGSVANL  212 (492)
T ss_dssp             SEEEEESSCHHHHHHHHHHHHTTCEEEEECCTTCCTTC
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEEECCccccc
Confidence            57999999999999999999999999999999887543

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=96.25  E-value=0.003  Score=57.34  Aligned_cols=37  Identities=14%  Similarity=0.151  Sum_probs=34.0

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG   41 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG   41 (328)
                      .+++|||||..|+-+|..|++.|.+|+|+|+++++..
T Consensus       186 ~~vvViGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~  222 (482)
T 1ojt_A          186 GKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLMQ  222 (482)
T ss_dssp             SEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSSST
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEEECCcccc
Confidence            5799999999999999999999999999999887654

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=96.23  E-value=0.0038  Score=56.16  Aligned_cols=34  Identities=26%  Similarity=0.191  Sum_probs=31.6

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~   37 (328)
                      ..+|.|||.|.+|+++|..|.++|++|++.|++.
T Consensus         9 ~k~v~viG~G~sG~s~A~~l~~~G~~V~~~D~~~   42 (451)
T 3lk7_A            9 NKKVLVLGLARSGEAAARLLAKLGAIVTVNDGKP   42 (451)
T ss_dssp             TCEEEEECCTTTHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCEEEEEeeCHHHHHHHHHHHhCCCEEEEEeCCc
Confidence            3579999999999999999999999999999865

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=96.22  E-value=0.0055  Score=54.77  Aligned_cols=39  Identities=13%  Similarity=0.149  Sum_probs=34.9

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCc
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGE   42 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~   42 (328)
                      ..+|+|||||.+|+-+|..|++.|.+|+++|+++.+..+
T Consensus       149 ~~~vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~~~~l~~  187 (431)
T 1q1r_A          149 DNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVLER  187 (431)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTT
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCEEEEEEeCCccccc
Confidence            357999999999999999999999999999998876543

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=96.21  E-value=0.004  Score=56.20  Aligned_cols=37  Identities=16%  Similarity=0.083  Sum_probs=34.0

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG   41 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG   41 (328)
                      -+++|||||.+|+-+|..|++.|.+|+|+|+++++..
T Consensus       172 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~  208 (464)
T 2a8x_A          172 KSIIIAGAGAIGMEFGYVLKNYGVDVTIVEFLPRALP  208 (464)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSST
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCeEEEEEcCCcccc
Confidence            5799999999999999999999999999999887654

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=96.19  E-value=0.0039  Score=53.16  Aligned_cols=33  Identities=24%  Similarity=0.367  Sum_probs=30.4

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~   37 (328)
                      ++|+|||+|..|.+.|..|+++|++|+++.++.
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~   35 (312)
T 3hn2_A            3 LRIAIVGAGALGLYYGALLQRSGEDVHFLLRRD   35 (312)
T ss_dssp             -CEEEECCSTTHHHHHHHHHHTSCCEEEECSTT
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCeEEEEEcCc
Confidence            579999999999999999999999999999864

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=96.18  E-value=0.0044  Score=52.39  Aligned_cols=37  Identities=14%  Similarity=-0.032  Sum_probs=32.4

Q ss_pred             CCcccEEEECCChhHHHHHHhhhhCCCeEEEeccCCC
Q 020312            2 DEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (328)
Q Consensus         2 ~~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~   38 (328)
                      +...+|.|||.|..|...|..|+++|++|++++++..
T Consensus        13 ~~~~~I~vIG~G~mG~~~A~~l~~~G~~V~~~dr~~~   49 (296)
T 3qha_A           13 TEQLKLGYIGLGNMGAPMATRMTEWPGGVTVYDIRIE   49 (296)
T ss_dssp             --CCCEEEECCSTTHHHHHHHHTTSTTCEEEECSSTT
T ss_pred             cCCCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            3356899999999999999999999999999998754

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=96.18  E-value=0.005  Score=52.65  Aligned_cols=37  Identities=19%  Similarity=0.420  Sum_probs=32.9

Q ss_pred             CCCcccEEEECCChhHHHHHHhhhhCCC-eEEEeccCC
Q 020312            1 MDEEYDVIVLGTGLKECILSGLLSVDGL-KVLHMDRND   37 (328)
Q Consensus         1 ~~~~~dvvIvG~G~aGl~aA~~L~~~G~-~V~vlE~~~   37 (328)
                      |+...+|+|||+|-.|.+.|..|++.|+ +|.++|.+.
T Consensus         1 m~~~~kI~VIGaG~vG~~ia~~la~~g~~~v~L~Di~~   38 (322)
T 1t2d_A            1 MAPKAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVK   38 (322)
T ss_dssp             -CCCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCH
Confidence            6666799999999999999999999998 999999764

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=96.16  E-value=0.0044  Score=48.20  Aligned_cols=33  Identities=21%  Similarity=0.225  Sum_probs=30.7

Q ss_pred             ccEEEECCChhHHHHHHhhhhC-CCeEEEeccCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVD-GLKVLHMDRND   37 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~-G~~V~vlE~~~   37 (328)
                      .+|+|+|+|..|...|..|.+. |++|+++|++.
T Consensus        40 ~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~   73 (183)
T 3c85_A           40 AQVLILGMGRIGTGAYDELRARYGKISLGIEIRE   73 (183)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCH
T ss_pred             CcEEEECCCHHHHHHHHHHHhccCCeEEEEECCH
Confidence            5799999999999999999999 99999999854

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=96.15  E-value=0.0058  Score=54.24  Aligned_cols=38  Identities=21%  Similarity=0.290  Sum_probs=34.5

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCC
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG   41 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG   41 (328)
                      ..+|+|||+|.+|+-+|..|++.|.+|+++|+.+++-.
T Consensus       143 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtvv~~~~~~l~  180 (410)
T 3ef6_A          143 ATRLLIVGGGLIGCEVATTARKLGLSVTILEAGDELLV  180 (410)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSH
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCCccch
Confidence            45799999999999999999999999999999887644

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=96.12  E-value=0.0038  Score=50.15  Aligned_cols=33  Identities=15%  Similarity=0.278  Sum_probs=30.4

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~   37 (328)
                      ++|+|+|+|-.|...|..|.++|++|+++|++.
T Consensus         1 M~iiIiG~G~~G~~la~~L~~~g~~v~vid~~~   33 (218)
T 3l4b_C            1 MKVIIIGGETTAYYLARSMLSRKYGVVIINKDR   33 (218)
T ss_dssp             CCEEEECCHHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            369999999999999999999999999999853

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=96.11  E-value=0.0049  Score=53.08  Aligned_cols=33  Identities=18%  Similarity=0.281  Sum_probs=30.9

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEeccC
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRN   36 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~   36 (328)
                      .++|+|||+|..|.+.|..|+++|++|++++++
T Consensus         3 ~mkI~IiGaG~~G~~~a~~L~~~g~~V~~~~r~   35 (335)
T 3ghy_A            3 LTRICIVGAGAVGGYLGARLALAGEAINVLARG   35 (335)
T ss_dssp             CCCEEEESCCHHHHHHHHHHHHTTCCEEEECCH
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCEEEEEECh
Confidence            568999999999999999999999999999874

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=96.11  E-value=0.0053  Score=52.01  Aligned_cols=35  Identities=29%  Similarity=0.224  Sum_probs=32.9

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY   39 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~   39 (328)
                      .+|+|||+|.+|+-+|..|++.|.+|+++++++.+
T Consensus       144 ~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~  178 (311)
T 2q0l_A          144 KEVAVLGGGDTAVEEAIYLANICKKVYLIHRRDGF  178 (311)
T ss_dssp             SEEEEECCSHHHHHHHHHHHTTSSEEEEECSSSSC
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCEEEEEeeCCcc
Confidence            57999999999999999999999999999998776

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=96.09  E-value=0.0043  Score=53.95  Aligned_cols=36  Identities=11%  Similarity=0.042  Sum_probs=29.8

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYG   40 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~G   40 (328)
                      .+|+|||+|.+|+-+|..|++.|.+|+++|+++.+.
T Consensus       167 ~~vvVvG~G~~g~e~a~~l~~~g~~V~lv~~~~~~~  202 (369)
T 3d1c_A          167 GQYVVIGGNESGFDAAYQLAKNGSDIALYTSTTGLN  202 (369)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECC-----
T ss_pred             CEEEEECCCcCHHHHHHHHHhcCCeEEEEecCCCCC
Confidence            479999999999999999999999999999976543

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=96.07  E-value=0.0057  Score=54.98  Aligned_cols=38  Identities=16%  Similarity=0.255  Sum_probs=34.7

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCc
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGE   42 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~   42 (328)
                      .+++|||||.+|+-+|..|++.|.+|+++|+++++...
T Consensus       149 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~  186 (449)
T 3kd9_A          149 ENVVIIGGGYIGIEMAEAFAAQGKNVTMIVRGERVLRR  186 (449)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTT
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCeEEEEEcCCccchh
Confidence            48999999999999999999999999999998876554

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=96.03  E-value=0.0056  Score=51.82  Aligned_cols=35  Identities=17%  Similarity=-0.049  Sum_probs=32.8

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY   39 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~   39 (328)
                      .+|+|||+|.+|+-+|..|++.|.+|+++++++.+
T Consensus       145 ~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~  179 (310)
T 1fl2_A          145 KRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEM  179 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTBSEEEEECSSSSC
T ss_pred             CEEEEECCCHHHHHHHHHHHHhCCEEEEEEeCccc
Confidence            47999999999999999999999999999998876

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=96.02  E-value=0.0056  Score=53.13  Aligned_cols=37  Identities=16%  Similarity=0.135  Sum_probs=32.0

Q ss_pred             CCCcccEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312            1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (328)
Q Consensus         1 ~~~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~   37 (328)
                      |++.++|.|||.|..|...|..|+++|++|++++++.
T Consensus        19 Mm~~mkIgiIGlG~mG~~~A~~L~~~G~~V~v~dr~~   55 (358)
T 4e21_A           19 YFQSMQIGMIGLGRMGADMVRRLRKGGHECVVYDLNV   55 (358)
T ss_dssp             ---CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             hhcCCEEEEECchHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            5566899999999999999999999999999999864

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=96.02  E-value=0.0045  Score=55.45  Aligned_cols=38  Identities=24%  Similarity=0.231  Sum_probs=34.5

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCc
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGE   42 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~   42 (328)
                      .+++|||||..|+-+|..|++.|.+|+|+|+++++...
T Consensus       148 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~ll~~  185 (437)
T 4eqs_A          148 DKVLVVGAGYVSLEVLENLYERGLHPTLIHRSDKINKL  185 (437)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSCCSTT
T ss_pred             cEEEEECCccchhhhHHHHHhcCCcceeeeeecccccc
Confidence            47999999999999999999999999999998876543

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=96.02  E-value=0.0051  Score=55.39  Aligned_cols=36  Identities=28%  Similarity=0.249  Sum_probs=33.1

Q ss_pred             CcccEEEECCChhHHHHHHhhhhC-CC-eEEEeccCCC
Q 020312            3 EEYDVIVLGTGLKECILSGLLSVD-GL-KVLHMDRNDY   38 (328)
Q Consensus         3 ~~~dvvIvG~G~aGl~aA~~L~~~-G~-~V~vlE~~~~   38 (328)
                      +.++|.|||+|..|+..|..|+++ |+ +|++++++..
T Consensus        17 ~~mkIaVIGlG~mG~~lA~~la~~~G~~~V~~~D~~~~   54 (478)
T 3g79_A           17 PIKKIGVLGMGYVGIPAAVLFADAPCFEKVLGFQRNSK   54 (478)
T ss_dssp             SCCEEEEECCSTTHHHHHHHHHHSTTCCEEEEECCCCT
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHhCCCCeEEEEECChh
Confidence            346899999999999999999999 99 9999998865

>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7

Probab=96.00  E-value=0.019  Score=46.45  Aligned_cols=35  Identities=20%  Similarity=0.383  Sum_probs=33.0

Q ss_pred             CcccEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (328)
Q Consensus         3 ~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~   37 (328)
                      +++||+|||||++|+.+|..|++.|.+|+|+|++.
T Consensus         2 ~~~dVvVVGgG~aGl~aA~~la~~g~~v~lie~~~   36 (232)
T 2cul_A            2 AAYQVLIVGAGFSGAETAFWLAQKGVRVGLLTQSL   36 (232)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCG
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEecCC
Confidence            46999999999999999999999999999999973

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=96.00  E-value=0.0036  Score=56.63  Aligned_cols=37  Identities=14%  Similarity=0.131  Sum_probs=34.1

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG   41 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG   41 (328)
                      .+++|||||.+|+-+|..|++.|.+|+|+|+++++..
T Consensus       178 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~  214 (470)
T 1dxl_A          178 KKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIVP  214 (470)
T ss_dssp             SEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSSST
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcccc
Confidence            5799999999999999999999999999999887654

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=95.98  E-value=0.0053  Score=45.39  Aligned_cols=32  Identities=28%  Similarity=0.241  Sum_probs=29.8

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRN   36 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~   36 (328)
                      .+|+|+|+|..|...|..|.+.|++|++++++
T Consensus         7 ~~v~I~G~G~iG~~~a~~l~~~g~~v~~~d~~   38 (144)
T 2hmt_A            7 KQFAVIGLGRFGGSIVKELHRMGHEVLAVDIN   38 (144)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCCEEEESC
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            46999999999999999999999999999974

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=95.97  E-value=0.006  Score=54.75  Aligned_cols=33  Identities=21%  Similarity=0.330  Sum_probs=31.1

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~   37 (328)
                      ++|.|||+|..|+..|..|+++|++|++++++.
T Consensus         3 mkI~VIG~G~vG~~lA~~La~~G~~V~~~D~~~   35 (450)
T 3gg2_A            3 LDIAVVGIGYVGLVSATCFAELGANVRCIDTDR   35 (450)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCCEEEEEECCH
Confidence            589999999999999999999999999999864

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=95.97  E-value=0.0058  Score=55.28  Aligned_cols=33  Identities=18%  Similarity=0.350  Sum_probs=31.2

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEeccC
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRN   36 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~   36 (328)
                      .++|+|||+|..|+..|..|+++|++|++++++
T Consensus         8 ~~~I~VIG~G~vG~~lA~~la~~G~~V~~~d~~   40 (478)
T 2y0c_A            8 SMNLTIIGSGSVGLVTGACLADIGHDVFCLDVD   40 (478)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             CceEEEECcCHHHHHHHHHHHhCCCEEEEEECC
Confidence            479999999999999999999999999999985

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=95.94  E-value=0.007  Score=51.67  Aligned_cols=36  Identities=22%  Similarity=0.178  Sum_probs=33.0

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYG   40 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~G   40 (328)
                      .+|+|||+|.+|+-+|..|++.|.+|+++++++.+.
T Consensus       153 ~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~  188 (325)
T 2q7v_A          153 KKVVVIGGGDAAVEEGMFLTKFADEVTVIHRRDTLR  188 (325)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTTCSEEEEECSSSSCC
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCEEEEEeCCCcCC
Confidence            479999999999999999999999999999987653

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=95.94  E-value=0.0064  Score=54.67  Aligned_cols=37  Identities=16%  Similarity=0.168  Sum_probs=33.8

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG   41 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG   41 (328)
                      .+++|||||.+|+-+|..|++.|.+|+++|+++++-.
T Consensus       150 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~  186 (452)
T 2cdu_A          150 KTITIIGSGYIGAELAEAYSNQNYNVNLIDGHERVLY  186 (452)
T ss_dssp             SEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSTTT
T ss_pred             CeEEEECcCHHHHHHHHHHHhcCCEEEEEEcCCchhh
Confidence            5799999999999999999999999999999887644

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=95.93  E-value=0.0069  Score=51.84  Aligned_cols=35  Identities=26%  Similarity=0.336  Sum_probs=32.8

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY   39 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~   39 (328)
                      .+|+|||+|.+|+-+|..|++.|.+|+++++++.+
T Consensus       160 ~~v~VvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~  194 (333)
T 1vdc_A          160 KPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAF  194 (333)
T ss_dssp             SEEEEECCSHHHHHHHHHHTTTSSEEEEECSSSSC
T ss_pred             CeEEEECCChHHHHHHHHHHhcCCeEEEEecCCcC
Confidence            57999999999999999999999999999998765

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=95.92  E-value=0.0067  Score=52.10  Aligned_cols=33  Identities=21%  Similarity=0.300  Sum_probs=31.0

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCC-eEEEeccCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGL-KVLHMDRND   37 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~-~V~vlE~~~   37 (328)
                      ++|+|||+|-.|.+.|..|++.|+ +|+++|.+.
T Consensus        10 ~kI~VIGaG~vG~~lA~~la~~g~~~V~L~D~~~   43 (331)
T 1pzg_A           10 KKVAMIGSGMIGGTMGYLCALRELADVVLYDVVK   43 (331)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCh
Confidence            689999999999999999999998 999999864

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=95.91  E-value=0.0049  Score=55.48  Aligned_cols=35  Identities=20%  Similarity=0.335  Sum_probs=32.3

Q ss_pred             CcccEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (328)
Q Consensus         3 ~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~   37 (328)
                      ..++|+|+|+|-.|.+.|..|.+.|++|+|+|++.
T Consensus         2 ~~M~iiI~G~G~vG~~la~~L~~~~~~v~vId~d~   36 (461)
T 4g65_A            2 NAMKIIILGAGQVGGTLAENLVGENNDITIVDKDG   36 (461)
T ss_dssp             CCEEEEEECCSHHHHHHHHHTCSTTEEEEEEESCH
T ss_pred             CcCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCH
Confidence            35789999999999999999999999999999864

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=95.91  E-value=0.0068  Score=54.78  Aligned_cols=37  Identities=16%  Similarity=0.182  Sum_probs=34.0

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG   41 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG   41 (328)
                      .+++|||||.+|+-+|..|++.|.+|+|+|+++++..
T Consensus       175 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~  211 (468)
T 2qae_A          175 KTMVVIGGGVIGLELGSVWARLGAEVTVVEFAPRCAP  211 (468)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSST
T ss_pred             ceEEEECCCHHHHHHHHHHHHhCCEEEEEecCCcccc
Confidence            5799999999999999999999999999999887654

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=95.90  E-value=0.0075  Score=50.58  Aligned_cols=33  Identities=24%  Similarity=0.194  Sum_probs=30.7

Q ss_pred             cEEEECCChhHHHHHHhhhhCCCeEEEeccCCC
Q 020312            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (328)
Q Consensus         6 dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~   38 (328)
                      +|.|||+|..|...|..|+++|++|++++++..
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~~   34 (291)
T 1ks9_A            2 KITVLGCGALGQLWLTALCKQGHEVQGWLRVPQ   34 (291)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             eEEEECcCHHHHHHHHHHHhCCCCEEEEEcCcc
Confidence            699999999999999999999999999998753

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=95.88  E-value=0.0062  Score=54.99  Aligned_cols=36  Identities=14%  Similarity=-0.021  Sum_probs=33.0

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYG   40 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~G   40 (328)
                      .+|+|||+|.+|+=+|..|++.|.+|+++++++.+-
T Consensus       198 k~VvVVG~G~sg~eiA~~l~~~g~~V~li~~~~~~~  233 (464)
T 2xve_A          198 KTVLLVGSSYSAEDIGSQCYKYGAKKLISCYRTAPM  233 (464)
T ss_dssp             SEEEEECCSTTHHHHHHHHHHTTCSEEEEECSSCCC
T ss_pred             CEEEEEcCCCCHHHHHHHHHHhCCeEEEEEECCCCC
Confidence            579999999999999999999999999999987653

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=95.86  E-value=0.0077  Score=51.57  Aligned_cols=37  Identities=14%  Similarity=0.147  Sum_probs=33.5

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG   41 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG   41 (328)
                      .+|+|||+|.+|+-+|..|++.|.+|+++++++.+..
T Consensus       153 ~~v~viG~G~~g~e~a~~l~~~g~~V~~v~~~~~~~~  189 (335)
T 2zbw_A          153 KRVLIVGGGDSAVDWALNLLDTARRITLIHRRPQFRA  189 (335)
T ss_dssp             CEEEEECSSHHHHHHHHHTTTTSSEEEEECSSSSCCS
T ss_pred             CEEEEECCCHHHHHHHHHHHhhCCEEEEEEcCCccCc
Confidence            4799999999999999999999999999999876543

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=95.85  E-value=0.0081  Score=51.57  Aligned_cols=36  Identities=22%  Similarity=0.277  Sum_probs=33.1

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCC
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY   39 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~   39 (328)
                      ..+|+|||+|.+|+-+|..|++.|.+|+++++++.+
T Consensus       155 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~l~~~~~~~  190 (335)
T 2a87_A          155 DQDIAVIGGGDSAMEEATFLTRFARSVTLVHRRDEF  190 (335)
T ss_dssp             TCEEEEECSSHHHHHHHHHHTTTCSEEEEECSSSSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhCCeEEEEEcCCcC
Confidence            357999999999999999999999999999998765

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=95.82  E-value=0.009  Score=52.85  Aligned_cols=38  Identities=18%  Similarity=0.230  Sum_probs=34.6

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCc
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGE   42 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~   42 (328)
                      .+++|||+|.+|+-+|..|++.|.+|+++|+.+++..+
T Consensus       143 ~~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~  180 (404)
T 3fg2_P          143 KHVVVIGAGFIGLEFAATARAKGLEVDVVELAPRVMAR  180 (404)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTT
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCCcchhh
Confidence            57999999999999999999999999999998876554

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=95.81  E-value=0.0075  Score=55.55  Aligned_cols=34  Identities=21%  Similarity=0.090  Sum_probs=31.8

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~   38 (328)
                      .+|+|||+|.+|+-+|..|++.|.+|+|+++++.
T Consensus       179 krV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~~  212 (540)
T 3gwf_A          179 RRVGVIGTGSTGQQVITSLAPEVEHLTVFVRTPQ  212 (540)
T ss_dssp             SEEEEECCSHHHHHHHHHHTTTCSEEEEEESSCC
T ss_pred             ceEEEECCCchHHHHHHHHHhhCCEEEEEECCCC
Confidence            5799999999999999999999999999999764

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=95.80  E-value=0.008  Score=53.37  Aligned_cols=39  Identities=15%  Similarity=0.175  Sum_probs=35.1

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCc
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGE   42 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~   42 (328)
                      ..+++|||+|..|+-+|..|++.|.+|+++|+.+++-.+
T Consensus       152 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~l~~  190 (415)
T 3lxd_A          152 AKNAVVIGGGYIGLEAAAVLTKFGVNVTLLEALPRVLAR  190 (415)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTT
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCchhhh
Confidence            357999999999999999999999999999998876544

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=95.77  E-value=0.0089  Score=50.26  Aligned_cols=33  Identities=21%  Similarity=0.300  Sum_probs=30.7

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~   37 (328)
                      +.+|.|||+|..|.+.|..|+ +|++|++++++.
T Consensus        12 ~~~V~vIG~G~MG~~iA~~la-aG~~V~v~d~~~   44 (293)
T 1zej_A           12 HMKVFVIGAGLMGRGIAIAIA-SKHEVVLQDVSE   44 (293)
T ss_dssp             CCEEEEECCSHHHHHHHHHHH-TTSEEEEECSCH
T ss_pred             CCeEEEEeeCHHHHHHHHHHH-cCCEEEEEECCH
Confidence            578999999999999999999 999999999864

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=95.75  E-value=0.02  Score=52.52  Aligned_cols=44  Identities=32%  Similarity=0.443  Sum_probs=40.2

Q ss_pred             CCCcccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCccc
Q 020312            1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (328)
Q Consensus         1 ~~~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~   44 (328)
                      |+.++||+|||||++|++||++|++.|++|+|+|+++.+||.+.
T Consensus        40 ~~~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~GG~~~   83 (523)
T 1mo9_A           40 DPREYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFLGGSCP   83 (523)
T ss_dssp             CCSCBSEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSCHHH
T ss_pred             CCCcCCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCCccc
Confidence            44569999999999999999999999999999999998898764

>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}

Probab=95.74  E-value=0.0047  Score=54.71  Aligned_cols=39  Identities=21%  Similarity=0.324  Sum_probs=35.4

Q ss_pred             cccEEEECCChhHHHHHHhhhhC--CCeEEEeccCCCCCCc
Q 020312            4 EYDVIVLGTGLKECILSGLLSVD--GLKVLHMDRNDYYGGE   42 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~--G~~V~vlE~~~~~GG~   42 (328)
                      ++||+|||||++|+++|++|+++  |.+|+|||+++..+|.
T Consensus        36 ~~dVvIIGaGi~Gls~A~~La~~~pG~~V~vlE~~~~~~~~   76 (405)
T 3c4n_A           36 AFDIVVIGAGRMGAACAFYLRQLAPGRSLLLVEEGGLPNEE   76 (405)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSCSSCTT
T ss_pred             cCCEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCCCCCcc
Confidence            48999999999999999999999  9999999998665554

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=95.72  E-value=0.0089  Score=53.65  Aligned_cols=35  Identities=14%  Similarity=-0.017  Sum_probs=32.3

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCe-EEEeccCCCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLK-VLHMDRNDYY   39 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~-V~vlE~~~~~   39 (328)
                      .+|+|||+|.+|+=+|..|++.|.+ |+|+++++..
T Consensus       213 k~VvVvG~G~sg~e~A~~l~~~~~~~V~l~~r~~~~  248 (447)
T 2gv8_A          213 ESVLVVGGASSANDLVRHLTPVAKHPIYQSLLGGGD  248 (447)
T ss_dssp             CCEEEECSSHHHHHHHHHHTTTSCSSEEEECTTCCS
T ss_pred             CEEEEEccCcCHHHHHHHHHHHhCCcEEEEeCCCCc
Confidence            4799999999999999999999999 9999998754

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=95.71  E-value=0.0086  Score=55.49  Aligned_cols=37  Identities=19%  Similarity=0.141  Sum_probs=33.8

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG   41 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG   41 (328)
                      .+|+|||||.+|+-+|..|++.|.+|+++|+++++..
T Consensus       152 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~  188 (565)
T 3ntd_A          152 EHATVVGGGFIGLEMMESLHHLGIKTTLLELADQVMT  188 (565)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSCT
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCcEEEEEcCCccch
Confidence            4899999999999999999999999999999886544

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=95.71  E-value=0.0092  Score=50.93  Aligned_cols=34  Identities=18%  Similarity=0.255  Sum_probs=31.2

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCC--eEEEeccCC
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGL--KVLHMDRND   37 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~--~V~vlE~~~   37 (328)
                      .++|+|||+|..|.+.|..|++.|+  +|++++++.
T Consensus         7 ~mkI~IiGaG~vG~~~a~~l~~~g~~~~V~l~d~~~   42 (319)
T 1lld_A            7 PTKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAK   42 (319)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence            3689999999999999999999999  999999863

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=95.71  E-value=0.011  Score=47.12  Aligned_cols=35  Identities=14%  Similarity=0.262  Sum_probs=31.6

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEeccCCC
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~   38 (328)
                      ..+|.|||+|..|.+.|..|+++|++|++++++..
T Consensus        19 ~~~I~iiG~G~mG~~la~~l~~~g~~V~~~~~~~~   53 (209)
T 2raf_A           19 GMEITIFGKGNMGQAIGHNFEIAGHEVTYYGSKDQ   53 (209)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTCEEEEECTTCC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence            36799999999999999999999999999998754

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=95.68  E-value=0.0092  Score=50.68  Aligned_cols=33  Identities=21%  Similarity=0.268  Sum_probs=30.6

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~   37 (328)
                      ++|.|||+|..|...|..|+++|++|++++++.
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~   36 (316)
T 2ew2_A            4 MKIAIAGAGAMGSRLGIMLHQGGNDVTLIDQWP   36 (316)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCCcEEEEECCH
Confidence            579999999999999999999999999998853

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=95.68  E-value=0.022  Score=51.90  Aligned_cols=40  Identities=18%  Similarity=0.263  Sum_probs=37.0

Q ss_pred             cccEEEECCChhHHHHHHhhhhC---CCeEEEeccCCCCCCccc
Q 020312            4 EYDVIVLGTGLKECILSGLLSVD---GLKVLHMDRNDYYGGESS   44 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~---G~~V~vlE~~~~~GG~~~   44 (328)
                      ++||+|||||++|++||++|+++   |++|+|+|+++ +||.+.
T Consensus         2 ~~dVvIIGgG~aGl~aA~~l~~~~~~G~~V~liE~~~-~GG~~~   44 (499)
T 1xdi_A            2 VTRIVILGGGPAGYEAALVAATSHPETTQVTVIDCDG-IGGAAV   44 (499)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESSC-TTHHHH
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCCcCEEEEEeCCC-cCCccc
Confidence            48999999999999999999999   99999999998 888654

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=95.68  E-value=0.0095  Score=50.68  Aligned_cols=35  Identities=20%  Similarity=0.144  Sum_probs=32.5

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY   39 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~   39 (328)
                      .+|+|||+|.+|+-+|..|++.|.+|+++++++.+
T Consensus       156 ~~v~viG~G~~g~e~a~~l~~~g~~V~~i~~~~~~  190 (319)
T 3cty_A          156 KRVVTIGGGNSGAIAAISMSEYVKNVTIIEYMPKY  190 (319)
T ss_dssp             SEEEEECCSHHHHHHHHHHTTTBSEEEEECSSSSC
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCCcEEEEEcCCcc
Confidence            47999999999999999999999999999998765

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=95.68  E-value=0.0077  Score=54.79  Aligned_cols=37  Identities=27%  Similarity=0.254  Sum_probs=34.0

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG   41 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG   41 (328)
                      -+|+|||||.+|+-+|..|++.|.+|+|+|+.+++..
T Consensus       199 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~  235 (491)
T 3urh_A          199 ASMIVVGGGVIGLELGSVWARLGAKVTVVEFLDTILG  235 (491)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCEEEEEeccccccc
Confidence            5799999999999999999999999999999887654

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=95.67  E-value=0.0095  Score=53.96  Aligned_cols=36  Identities=28%  Similarity=0.321  Sum_probs=33.3

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYG   40 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~G   40 (328)
                      -+++|||||.+|+-+|..|++.|.+|+++|+++++.
T Consensus       188 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l  223 (478)
T 3dk9_A          188 GRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVL  223 (478)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSC
T ss_pred             ccEEEECCCHHHHHHHHHHHHcCCeEEEEEeCCccc
Confidence            579999999999999999999999999999987754

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=95.66  E-value=0.0075  Score=50.02  Aligned_cols=34  Identities=15%  Similarity=0.122  Sum_probs=31.3

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~   37 (328)
                      ...|+|||||-.|+..|..|.+.|.+|+|++...
T Consensus        13 ~k~VLVVGgG~va~rka~~Ll~~Ga~VtViap~~   46 (274)
T 1kyq_A           13 DKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPDL   46 (274)
T ss_dssp             TCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEEE
T ss_pred             CCEEEEECCcHHHHHHHHHHHhCCCEEEEEcCCC
Confidence            4689999999999999999999999999998753

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}

Probab=95.66  E-value=0.011  Score=50.24  Aligned_cols=34  Identities=26%  Similarity=0.349  Sum_probs=31.4

Q ss_pred             CcccEEEECCChhHHHHHHhhhhCCC-eEEEeccC
Q 020312            3 EEYDVIVLGTGLKECILSGLLSVDGL-KVLHMDRN   36 (328)
Q Consensus         3 ~~~dvvIvG~G~aGl~aA~~L~~~G~-~V~vlE~~   36 (328)
                      +..+|+|||+|..|.++|+.|++.|+ +|+++|.+
T Consensus         7 ~~~kv~ViGaG~vG~~ia~~l~~~g~~~v~l~D~~   41 (315)
T 3tl2_A            7 KRKKVSVIGAGFTGATTAFLLAQKELADVVLVDIP   41 (315)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCG
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEecc
Confidence            34689999999999999999999999 99999985

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=95.65  E-value=0.0099  Score=53.68  Aligned_cols=38  Identities=13%  Similarity=0.230  Sum_probs=34.4

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCc
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGE   42 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~   42 (328)
                      ..++|||||.+|+-+|..|++.|.+|+++|+++++-..
T Consensus       173 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~  210 (466)
T 3l8k_A          173 QDMVIIGAGYIGLEIASIFRLMGVQTHIIEMLDRALIT  210 (466)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTT
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCcCCCC
Confidence            57999999999999999999999999999998876543

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=95.64  E-value=0.0087  Score=55.19  Aligned_cols=34  Identities=18%  Similarity=0.196  Sum_probs=31.8

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~   38 (328)
                      .+|+|||+|.+|+-+|..|++.|.+|+|+++++.
T Consensus       186 krV~VIG~G~tgve~a~~la~~~~~Vtv~~r~~~  219 (545)
T 3uox_A          186 KRVGVIGTGATGVQIIPIAAETAKELYVFQRTPN  219 (545)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTTBSEEEEEESSCC
T ss_pred             CeEEEECCCccHHHHHHHHHhhCCEEEEEEcCCC
Confidence            5799999999999999999999999999999764

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=95.64  E-value=0.019  Score=52.12  Aligned_cols=43  Identities=21%  Similarity=0.295  Sum_probs=38.3

Q ss_pred             CcccEEEECCChhHHHHHHhhhh-CCCeEEEec--------cCCCCCCcccc
Q 020312            3 EEYDVIVLGTGLKECILSGLLSV-DGLKVLHMD--------RNDYYGGESSS   45 (328)
Q Consensus         3 ~~~dvvIvG~G~aGl~aA~~L~~-~G~~V~vlE--------~~~~~GG~~~s   45 (328)
                      .++||+|||||++|++||++|++ +|++|+|+|        +++.+||.+..
T Consensus         2 ~~~dvvVIGgG~aGl~aA~~la~~~G~~V~liE~~~~~~~~~~~~~GG~c~~   53 (490)
T 1fec_A            2 RAYDLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQKHHGPPHYAALGGTCVN   53 (490)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHHHCCCEEEEESCSSSBTTTBSCTTCHHHH
T ss_pred             ccccEEEECCCHHHHHHHHHHHHHcCCEEEEEecccccccccCCCcCccccC
Confidence            46899999999999999999999 999999999        46788986643

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=95.63  E-value=0.011  Score=51.18  Aligned_cols=33  Identities=24%  Similarity=0.264  Sum_probs=31.1

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEeccC
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRN   36 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~   36 (328)
                      .++|.|||+|.-|.+.|..|+++|++|++++++
T Consensus        29 ~mkI~VIGaG~mG~alA~~La~~G~~V~l~~r~   61 (356)
T 3k96_A           29 KHPIAILGAGSWGTALALVLARKGQKVRLWSYE   61 (356)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHTTTCCEEEECSC
T ss_pred             CCeEEEECccHHHHHHHHHHHHCCCeEEEEeCC
Confidence            468999999999999999999999999999985

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=95.61  E-value=0.013  Score=47.07  Aligned_cols=33  Identities=15%  Similarity=0.127  Sum_probs=30.6

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEeccC
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRN   36 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~   36 (328)
                      ...|+|||||-.|...|..|.+.|.+|+|++..
T Consensus        31 gk~VLVVGgG~va~~ka~~Ll~~GA~VtVvap~   63 (223)
T 3dfz_A           31 GRSVLVVGGGTIATRRIKGFLQEGAAITVVAPT   63 (223)
T ss_dssp             TCCEEEECCSHHHHHHHHHHGGGCCCEEEECSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEECCC
Confidence            468999999999999999999999999999864

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=95.60  E-value=0.022  Score=51.83  Aligned_cols=44  Identities=23%  Similarity=0.309  Sum_probs=39.4

Q ss_pred             CCCcccEEEECCChhHHHHHHhhhh-CCCeEEEec--------cCCCCCCccc
Q 020312            1 MDEEYDVIVLGTGLKECILSGLLSV-DGLKVLHMD--------RNDYYGGESS   44 (328)
Q Consensus         1 ~~~~~dvvIvG~G~aGl~aA~~L~~-~G~~V~vlE--------~~~~~GG~~~   44 (328)
                      |+.++||+|||||++|++||++|++ +|++|+|+|        +++.+||.+.
T Consensus         4 M~~~~dvvVIGgG~aGl~aA~~la~~~G~~V~liE~~~~~~~~~~~~~GG~~~   56 (495)
T 2wpf_A            4 MSKAFDLVVIGAGSGGLEAGWNAATLYGKRVAVVDVQTSHGPPFYAALGGTCV   56 (495)
T ss_dssp             CCEEEEEEEECCSHHHHHHHHHHHHHHCCCEEEEESCSSSBTTTBCBTTHHHH
T ss_pred             cccccCEEEECCChhHHHHHHHHHHhcCCeEEEEecccccccccCCCCCCeee
Confidence            6667999999999999999999999 999999999        4678888654

>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=95.58  E-value=0.0071  Score=51.03  Aligned_cols=33  Identities=15%  Similarity=0.171  Sum_probs=30.8

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~   37 (328)
                      ++|+|||+|.-|.+.|..|+++|++|+++.++.
T Consensus         3 mkI~iiGaGa~G~~~a~~L~~~g~~V~~~~r~~   35 (294)
T 3g17_A            3 LSVAIIGPGAVGTTIAYELQQSLPHTTLIGRHA   35 (294)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHCTTCEEEESSC
T ss_pred             cEEEEECCCHHHHHHHHHHHHCCCeEEEEEecc
Confidence            589999999999999999999999999999873

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=95.56  E-value=0.011  Score=53.12  Aligned_cols=37  Identities=16%  Similarity=0.023  Sum_probs=34.1

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG   41 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG   41 (328)
                      .+++|||+|..|+-+|..|++.|.+|+++|+++++..
T Consensus       148 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~  184 (452)
T 3oc4_A          148 QTVAVIGAGPIGMEAIDFLVKMKKTVHVFESLENLLP  184 (452)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSST
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEEccCcccc
Confidence            4799999999999999999999999999999887654

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=95.56  E-value=0.012  Score=50.29  Aligned_cols=37  Identities=27%  Similarity=0.370  Sum_probs=33.5

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG   41 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG   41 (328)
                      .+++|||+|.+|+-+|..|++.|.+|+++++++.+..
T Consensus       174 ~~v~vvG~G~~g~e~a~~l~~~g~~v~~v~~~~~~~~  210 (338)
T 3itj_A          174 KPLAVIGGGDSACEEAQFLTKYGSKVFMLVRKDHLRA  210 (338)
T ss_dssp             SEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCCS
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCccCC
Confidence            5799999999999999999999999999999876543

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=95.54  E-value=0.011  Score=49.83  Aligned_cols=37  Identities=19%  Similarity=0.252  Sum_probs=31.6

Q ss_pred             CCCcccEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312            1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (328)
Q Consensus         1 ~~~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~   37 (328)
                      |...++|.|||+|..|...|..|++.|++|++++++.
T Consensus         1 M~~~~~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~   37 (301)
T 3cky_A            1 MEKSIKIGFIGLGAMGKPMAINLLKEGVTVYAFDLME   37 (301)
T ss_dssp             ---CCEEEEECCCTTHHHHHHHHHHTTCEEEEECSSH
T ss_pred             CCCCCEEEEECccHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            6667899999999999999999999999999998853

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=95.51  E-value=0.013  Score=52.71  Aligned_cols=33  Identities=21%  Similarity=0.220  Sum_probs=30.7

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~   37 (328)
                      .+|.|||+|..|...|..|+++|++|+++|++.
T Consensus        38 ~kV~VIGaG~MG~~iA~~la~~G~~V~l~D~~~   70 (463)
T 1zcj_A           38 SSVGVLGLGTMGRGIAISFARVGISVVAVESDP   70 (463)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEECSSH
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            469999999999999999999999999999864

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=95.51  E-value=0.014  Score=50.61  Aligned_cols=37  Identities=19%  Similarity=0.207  Sum_probs=33.4

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG   41 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG   41 (328)
                      -+|+|||+|.+|+-+|..|++.|.+|+++++++.+..
T Consensus       164 ~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~  200 (360)
T 3ab1_A          164 KRVVIVGGGDSALDWTVGLIKNAASVTLVHRGHEFQG  200 (360)
T ss_dssp             CEEEEECSSHHHHHHHHHTTTTSSEEEEECSSSSCSS
T ss_pred             CcEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCCCCC
Confidence            4799999999999999999999999999999876543

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=95.50  E-value=0.014  Score=50.09  Aligned_cols=33  Identities=21%  Similarity=0.323  Sum_probs=30.9

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCC-eEEEeccCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGL-KVLHMDRND   37 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~-~V~vlE~~~   37 (328)
                      .+|+|||+|..|.+.|..|++.|+ +|+++|.+.
T Consensus        15 ~kI~ViGaG~vG~~iA~~la~~g~~~V~L~Di~~   48 (328)
T 2hjr_A           15 KKISIIGAGQIGSTIALLLGQKDLGDVYMFDIIE   48 (328)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSST
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCH
Confidence            589999999999999999999998 999999874

>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A*

Probab=95.45  E-value=0.041  Score=50.18  Aligned_cols=34  Identities=18%  Similarity=0.378  Sum_probs=30.4

Q ss_pred             ccEEEECCChhHHHHHHhhhh---CCCeEEEeccCCC
Q 020312            5 YDVIVLGTGLKECILSGLLSV---DGLKVLHMDRNDY   38 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~---~G~~V~vlE~~~~   38 (328)
                      +||||||||++|+++|+.|++   +|.+|+|+|+.+.
T Consensus         3 ~dVvIVGgG~aGl~~A~~La~~~~~G~~V~lvE~~~~   39 (511)
T 2weu_A            3 RSVVIVGGGTAGWMTASYLKAAFDDRIDVTLVESGNV   39 (511)
T ss_dssp             CEEEEECCHHHHHHHHHHHHHHHGGGSEEEEEEC---
T ss_pred             ceEEEECCCHHHHHHHHHHHhhcCCCCEEEEEecCCC
Confidence            699999999999999999999   9999999999764

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=95.45  E-value=0.023  Score=51.16  Aligned_cols=43  Identities=30%  Similarity=0.434  Sum_probs=37.7

Q ss_pred             CCC-cccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCccc
Q 020312            1 MDE-EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (328)
Q Consensus         1 ~~~-~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~   44 (328)
                      |++ ++||+|||||++|++||++|+++|++|+|+|+ +.+||.+.
T Consensus         1 M~~~~~DVvVIGaG~aGl~aA~~la~~G~~V~liEk-~~~GG~~~   44 (463)
T 4dna_A            1 MSAFDYDLFVIGGGSGGVRSGRLAAALGKKVAIAEE-FRYGGTCV   44 (463)
T ss_dssp             --CCSEEEEEECCSHHHHHHHHHHHTTTCCEEEEES-SCTTHHHH
T ss_pred             CCCCCCcEEEECcCHHHHHHHHHHHhCCCEEEEEeC-CCCCCccc
Confidence            554 69999999999999999999999999999999 77888654

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=95.45  E-value=0.011  Score=53.38  Aligned_cols=36  Identities=19%  Similarity=0.218  Sum_probs=32.3

Q ss_pred             CCCcccEEEECCChhHHHHHHhhhhC--CCeEEEeccC
Q 020312            1 MDEEYDVIVLGTGLKECILSGLLSVD--GLKVLHMDRN   36 (328)
Q Consensus         1 ~~~~~dvvIvG~G~aGl~aA~~L~~~--G~~V~vlE~~   36 (328)
                      |.+.++|.|||.|..|+..|..|+++  |++|++++++
T Consensus         2 M~~~mkI~VIG~G~mG~~lA~~La~~g~G~~V~~~d~~   39 (467)
T 2q3e_A            2 MFEIKKICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVN   39 (467)
T ss_dssp             CCCCCEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSC
T ss_pred             CCCccEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECC
Confidence            45457899999999999999999999  8999999885

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=95.44  E-value=0.013  Score=53.01  Aligned_cols=34  Identities=24%  Similarity=0.305  Sum_probs=31.5

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~   37 (328)
                      ..+|.|||+|..|...|..|+++|++|+++|++.
T Consensus         5 ~~kVgVIGaG~MG~~IA~~la~aG~~V~l~D~~~   38 (483)
T 3mog_A            5 VQTVAVIGSGTMGAGIAEVAASHGHQVLLYDISA   38 (483)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCCEEEECSCH
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCeEEEEECCH
Confidence            4589999999999999999999999999999864

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=95.43  E-value=0.015  Score=52.01  Aligned_cols=34  Identities=18%  Similarity=0.328  Sum_probs=31.7

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~   38 (328)
                      .+|.|||+|..|.+.|..|+++|++|+++|++..
T Consensus        55 ~kVaVIGaG~MG~~IA~~la~aG~~V~l~D~~~e   88 (460)
T 3k6j_A           55 NSVAIIGGGTMGKAMAICFGLAGIETFLVVRNEQ   88 (460)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEECcHH
Confidence            5799999999999999999999999999998764

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=95.43  E-value=0.028  Score=50.94  Aligned_cols=41  Identities=22%  Similarity=0.349  Sum_probs=37.5

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCcccc
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSS   45 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~s   45 (328)
                      ++||+|||||++||+||++|+++|++|+|+|+ +.+||.+..
T Consensus        26 ~~DVvVIGgG~aGl~aA~~la~~G~~V~liEk-~~~GG~~~~   66 (484)
T 3o0h_A           26 DFDLFVIGSGSGGVRAARLAGALGKRVAIAEE-YRIGGTCVI   66 (484)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHHTTCCEEEEES-SCTTHHHHH
T ss_pred             CCCEEEECcCHHHHHHHHHHHhCcCEEEEEeC-CCCCCceec
Confidence            68999999999999999999999999999999 778886543

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=95.43  E-value=0.013  Score=50.06  Aligned_cols=33  Identities=24%  Similarity=0.538  Sum_probs=29.6

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~   37 (328)
                      ..+|+|||+|.-|...|..|+++|++|+++ +++
T Consensus        19 ~~kI~IiGaGa~G~~~a~~L~~~G~~V~l~-~~~   51 (318)
T 3hwr_A           19 GMKVAIMGAGAVGCYYGGMLARAGHEVILI-ARP   51 (318)
T ss_dssp             -CEEEEESCSHHHHHHHHHHHHTTCEEEEE-CCH
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCCCeEEEE-EcH
Confidence            368999999999999999999999999999 653

>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}

Probab=95.42  E-value=0.014  Score=49.60  Aligned_cols=32  Identities=19%  Similarity=0.146  Sum_probs=29.9

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~   37 (328)
                      ++|+|||+|..|...|..|+ +|++|+++.++.
T Consensus         3 mkI~IiGaGa~G~~~a~~L~-~g~~V~~~~r~~   34 (307)
T 3ego_A            3 LKIGIIGGGSVGLLCAYYLS-LYHDVTVVTRRQ   34 (307)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-TTSEEEEECSCH
T ss_pred             CEEEEECCCHHHHHHHHHHh-cCCceEEEECCH
Confidence            58999999999999999999 999999999864

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=95.41  E-value=0.0095  Score=54.97  Aligned_cols=34  Identities=18%  Similarity=0.200  Sum_probs=31.7

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~   38 (328)
                      .+|+|||+|.+|+-+|..|++.|.+|+|+++++.
T Consensus       192 krV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~~  225 (549)
T 4ap3_A          192 KRVGVIGTGSSGIQSIPIIAEQAEQLFVFQRSAN  225 (549)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHBSEEEEEESSCC
T ss_pred             CEEEEECCCchHHHHHHHHHhhCCEEEEEECCCC
Confidence            5799999999999999999999999999999664

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=95.41  E-value=0.0096  Score=53.62  Aligned_cols=35  Identities=11%  Similarity=0.060  Sum_probs=31.9

Q ss_pred             cccEEEECCChhHHHHHHhhhhC--CCeEEEeccCCC
Q 020312            4 EYDVIVLGTGLKECILSGLLSVD--GLKVLHMDRNDY   38 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~--G~~V~vlE~~~~   38 (328)
                      ..+|+|||||.+|+=+|..|++.  |.+|+++++++.
T Consensus       227 ~~~vvVvGgG~sg~e~a~~l~~~~~~~~Vt~v~r~~~  263 (463)
T 3s5w_A          227 PMKIAIIGGGQSAAEAFIDLNDSYPSVQADMILRASA  263 (463)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHCTTEEEEEECSSSS
T ss_pred             CCeEEEECCCHhHHHHHHHHHhcCCCCeEEEEEeCCC
Confidence            46899999999999999999998  899999998664

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=95.41  E-value=0.015  Score=49.79  Aligned_cols=34  Identities=21%  Similarity=0.273  Sum_probs=30.6

Q ss_pred             ccEEEECCChhHHH-HHHhhhhCCCeEEEeccCCC
Q 020312            5 YDVIVLGTGLKECI-LSGLLSVDGLKVLHMDRNDY   38 (328)
Q Consensus         5 ~dvvIvG~G~aGl~-aA~~L~~~G~~V~vlE~~~~   38 (328)
                      .+|.|||.|.+|++ +|..|.++|++|++.|++..
T Consensus         5 ~~i~~iGiGg~Gms~~A~~L~~~G~~V~~~D~~~~   39 (326)
T 3eag_A            5 KHIHIIGIGGTFMGGLAAIAKEAGFEVSGCDAKMY   39 (326)
T ss_dssp             CEEEEESCCSHHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred             cEEEEEEECHHHHHHHHHHHHhCCCEEEEEcCCCC
Confidence            47999999999997 78889999999999999764

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=95.40  E-value=0.015  Score=49.35  Aligned_cols=33  Identities=30%  Similarity=0.300  Sum_probs=31.2

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~   37 (328)
                      ++|.|||.|..|...|..|+++|++|++++++.
T Consensus        22 ~~I~iIG~G~mG~~~A~~l~~~G~~V~~~dr~~   54 (310)
T 3doj_A           22 MEVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTL   54 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSG
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            689999999999999999999999999999875

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=95.40  E-value=0.011  Score=55.11  Aligned_cols=32  Identities=25%  Similarity=0.265  Sum_probs=30.4

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRN   36 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~   36 (328)
                      -+|+|||||.+|+-+|..|++.|.+|+|+|++
T Consensus       287 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~  318 (598)
T 2x8g_A          287 GKTLVIGASYVALECAGFLASLGGDVTVMVRS  318 (598)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCEEEEEECC
Confidence            47999999999999999999999999999987

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=95.38  E-value=0.014  Score=49.42  Aligned_cols=32  Identities=28%  Similarity=0.424  Sum_probs=29.9

Q ss_pred             cEEEECCChhHHHHHHhhhhCCC--eEEEeccCC
Q 020312            6 DVIVLGTGLKECILSGLLSVDGL--KVLHMDRND   37 (328)
Q Consensus         6 dvvIvG~G~aGl~aA~~L~~~G~--~V~vlE~~~   37 (328)
                      +|+|||+|..|.+.|..|+++|+  +|.++|.+.
T Consensus         2 kI~VIGaG~vG~~la~~la~~g~~~eV~L~D~~~   35 (304)
T 2v6b_A            2 KVGVVGTGFVGSTAAFALVLRGSCSELVLVDRDE   35 (304)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCH
Confidence            79999999999999999999998  999999863

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=95.36  E-value=0.037  Score=46.89  Aligned_cols=43  Identities=14%  Similarity=0.222  Sum_probs=37.6

Q ss_pred             CCCcccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCccc
Q 020312            1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (328)
Q Consensus         1 ~~~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~   44 (328)
                      ||.++||+|||||++|++||++|+++|++|+|+|+. .+||.+.
T Consensus         2 ~~~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~-~~gg~~~   44 (320)
T 1trb_A            2 TTKHSKLLILGSGPAGYTAAVYAARANLQPVLITGM-EKGGQLT   44 (320)
T ss_dssp             CEEEEEEEEECCSHHHHHHHHHHHTTTCCCEEECCS-STTGGGG
T ss_pred             CCCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEccC-CCCceEe
Confidence            455799999999999999999999999999999974 6777543

>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}

Probab=95.34  E-value=0.015  Score=50.04  Aligned_cols=33  Identities=27%  Similarity=0.442  Sum_probs=30.9

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEeccC
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRN   36 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~   36 (328)
                      +++|.|||+|.-|...|..|+++|++|+++.++
T Consensus        14 ~~kI~iIG~G~mG~ala~~L~~~G~~V~~~~r~   46 (335)
T 1z82_A           14 EMRFFVLGAGSWGTVFAQMLHENGEEVILWARR   46 (335)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             CCcEEEECcCHHHHHHHHHHHhCCCeEEEEeCC
Confidence            478999999999999999999999999999885

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=95.33  E-value=0.013  Score=52.39  Aligned_cols=31  Identities=26%  Similarity=0.492  Sum_probs=29.6

Q ss_pred             cEEEECCChhHHHHHHhhhhCCCeEEEeccC
Q 020312            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRN   36 (328)
Q Consensus         6 dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~   36 (328)
                      +|.|||+|..|+..|..|+++|++|++++++
T Consensus         2 kI~VIG~G~vG~~~A~~la~~G~~V~~~d~~   32 (436)
T 1mv8_A            2 RISIFGLGYVGAVCAGCLSARGHEVIGVDVS   32 (436)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSC
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            6999999999999999999999999999985

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=95.33  E-value=0.017  Score=50.67  Aligned_cols=34  Identities=18%  Similarity=0.142  Sum_probs=31.5

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~   37 (328)
                      ..+|+|+|+|..|+.+|..|...|.+|+++|++.
T Consensus       190 ~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~  223 (405)
T 4dio_A          190 AAKIFVMGAGVAGLQAIATARRLGAVVSATDVRP  223 (405)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSST
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            4689999999999999999999999999999865

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*

Probab=95.30  E-value=0.043  Score=42.20  Aligned_cols=56  Identities=18%  Similarity=0.126  Sum_probs=44.1

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEecCceEEcCEEEECCCCCcc
Q 020312          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPN  290 (328)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~~g~~~~ad~vV~~~~~~~~  290 (328)
                      ..+.+.+.+.+++.|++++++ +|++|..+ ++. +.+++++++++||.||.+.+..|.
T Consensus        56 ~~~~~~l~~~~~~~gv~v~~~-~v~~i~~~-~~~-~~v~~~~g~i~ad~vI~A~G~~~~  111 (180)
T 2ywl_A           56 EELLRRLEAHARRYGAEVRPG-VVKGVRDM-GGV-FEVETEEGVEKAERLLLCTHKDPT  111 (180)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEC-CCCEEEEC-SSS-EEEECSSCEEEEEEEEECCTTCCH
T ss_pred             HHHHHHHHHHHHHcCCEEEeC-EEEEEEEc-CCE-EEEEECCCEEEECEEEECCCCCCC
Confidence            356777778888899999999 99999987 555 445663338999999999888774

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=95.30  E-value=0.016  Score=51.76  Aligned_cols=35  Identities=20%  Similarity=0.319  Sum_probs=32.2

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEeccCCC
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~   38 (328)
                      ...++|||.|..|+..|..|+++|++|++++++..
T Consensus         8 ~~~~~vIGlG~vG~~~A~~La~~G~~V~~~D~~~~   42 (446)
T 4a7p_A            8 SVRIAMIGTGYVGLVSGACFSDFGHEVVCVDKDAR   42 (446)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCST
T ss_pred             ceEEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            46899999999999999999999999999998753

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1

Probab=95.28  E-value=0.017  Score=49.29  Aligned_cols=34  Identities=12%  Similarity=0.213  Sum_probs=30.9

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCC--eEEEeccCC
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGL--KVLHMDRND   37 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~--~V~vlE~~~   37 (328)
                      .++|+|||+|-.|.+.|+.|++.|.  +|.++|.+.
T Consensus         7 ~~KI~IiGaG~vG~~~a~~l~~~~~~~ev~L~Di~~   42 (318)
T 1y6j_A            7 RSKVAIIGAGFVGASAAFTMALRQTANELVLIDVFK   42 (318)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC-
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence            5799999999999999999999997  999999863

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=95.28  E-value=0.015  Score=54.12  Aligned_cols=38  Identities=16%  Similarity=0.171  Sum_probs=34.4

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCc
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGE   42 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~   42 (328)
                      .+++|||||.+|+-+|..|++.|.+|+++|+++++...
T Consensus       188 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~  225 (588)
T 3ics_A          188 RHATVIGGGFIGVEMVENLRERGIEVTLVEMANQVMPP  225 (588)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTT
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCeEEEEecCCccccc
Confidence            57999999999999999999999999999998876543

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=95.26  E-value=0.012  Score=53.96  Aligned_cols=36  Identities=17%  Similarity=-0.057  Sum_probs=33.2

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYG   40 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~G   40 (328)
                      .+|+|||||.+|+-+|..|++.|.+|+++|+++.+.
T Consensus       356 k~V~ViGgG~~g~E~A~~L~~~g~~Vtlv~~~~~l~  391 (521)
T 1hyu_A          356 KRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMK  391 (521)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHBSEEEEECSSSSCC
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCCEEEEEEeCcccC
Confidence            479999999999999999999999999999987764

>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*

Probab=95.24  E-value=0.012  Score=51.30  Aligned_cols=31  Identities=26%  Similarity=0.260  Sum_probs=29.6

Q ss_pred             cEEEECCChhHHHHHHhhhhCCCeEEEeccC
Q 020312            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRN   36 (328)
Q Consensus         6 dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~   36 (328)
                      +|.|||+|..|.+.|..|+++|++|++++++
T Consensus        17 kI~iIG~G~mG~~la~~L~~~G~~V~~~~r~   47 (366)
T 1evy_A           17 KAVVFGSGAFGTALAMVLSKKCREVCVWHMN   47 (366)
T ss_dssp             EEEEECCSHHHHHHHHHHTTTEEEEEEECSC
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCEEEEEECC
Confidence            7999999999999999999999999999875

>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*

Probab=95.24  E-value=0.016  Score=49.50  Aligned_cols=37  Identities=16%  Similarity=0.192  Sum_probs=31.5

Q ss_pred             CCCcccEEEECCChhHHHHHHhhhhCC----CeEEEeccCC
Q 020312            1 MDEEYDVIVLGTGLKECILSGLLSVDG----LKVLHMDRND   37 (328)
Q Consensus         1 ~~~~~dvvIvG~G~aGl~aA~~L~~~G----~~V~vlE~~~   37 (328)
                      |+..++|.|||+|..|.+.|..|+++|    ++|++++++.
T Consensus        19 ~~~~mkI~iIG~G~mG~ala~~L~~~G~~~~~~V~v~~r~~   59 (322)
T 2izz_A           19 YFQSMSVGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDM   59 (322)
T ss_dssp             ---CCCEEEESCSHHHHHHHHHHHHTTSSCGGGEEEECSCT
T ss_pred             ccCCCEEEEECCCHHHHHHHHHHHHCCCCCcceEEEECCCc
Confidence            344578999999999999999999999    8999999865

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=95.21  E-value=0.019  Score=48.87  Aligned_cols=34  Identities=24%  Similarity=0.203  Sum_probs=31.4

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~   37 (328)
                      ..+|.|||+|..|...|..|++.|++|++++++.
T Consensus        30 ~~~I~iIG~G~mG~~~a~~l~~~g~~V~~~~~~~   63 (316)
T 2uyy_A           30 DKKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTA   63 (316)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHHTTCCEEEECSSG
T ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            4789999999999999999999999999999864

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=95.18  E-value=0.016  Score=42.98  Aligned_cols=33  Identities=21%  Similarity=0.350  Sum_probs=30.1

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEeccC
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRN   36 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~   36 (328)
                      ...|+|||+|..|...|..|++.|.+|++++++
T Consensus        21 ~~~v~iiG~G~iG~~~a~~l~~~g~~v~v~~r~   53 (144)
T 3oj0_A           21 GNKILLVGNGMLASEIAPYFSYPQYKVTVAGRN   53 (144)
T ss_dssp             CCEEEEECCSHHHHHHGGGCCTTTCEEEEEESC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCC
Confidence            357999999999999999999999999999875

>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}

Probab=95.16  E-value=0.011  Score=50.25  Aligned_cols=35  Identities=26%  Similarity=0.470  Sum_probs=29.8

Q ss_pred             CCCc-ccEEEECCChhHHHHHHhhhhC-----C-CeEEEecc
Q 020312            1 MDEE-YDVIVLGTGLKECILSGLLSVD-----G-LKVLHMDR   35 (328)
Q Consensus         1 ~~~~-~dvvIvG~G~aGl~aA~~L~~~-----G-~~V~vlE~   35 (328)
                      |+.. ++|.|||+|..|...|..|+++     | ++|+++++
T Consensus         4 m~~~~m~I~iiG~G~mG~~~a~~L~~~~~~~~g~~~V~~~~r   45 (317)
T 2qyt_A            4 MNQQPIKIAVFGLGGVGGYYGAMLALRAAATDGLLEVSWIAR   45 (317)
T ss_dssp             ---CCEEEEEECCSHHHHHHHHHHHHHHHHTTSSEEEEEECC
T ss_pred             CCCCCCEEEEECcCHHHHHHHHHHHhCccccCCCCCEEEEEc
Confidence            4443 5899999999999999999999     9 99999987

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=95.11  E-value=0.019  Score=48.53  Aligned_cols=34  Identities=21%  Similarity=0.184  Sum_probs=31.4

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~   37 (328)
                      .++|.|||.|..|...|..|+++|++|++++++.
T Consensus         7 ~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~   40 (303)
T 3g0o_A            7 DFHVGIVGLGSMGMGAARSCLRAGLSTWGADLNP   40 (303)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence            4689999999999999999999999999999864

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=95.11  E-value=0.018  Score=49.24  Aligned_cols=36  Identities=22%  Similarity=0.376  Sum_probs=31.3

Q ss_pred             CCC-cccEEEECCChhHHHHHHhhhhCCC--eEEEeccC
Q 020312            1 MDE-EYDVIVLGTGLKECILSGLLSVDGL--KVLHMDRN   36 (328)
Q Consensus         1 ~~~-~~dvvIvG~G~aGl~aA~~L~~~G~--~V~vlE~~   36 (328)
                      |++ ..+|+|||+|..|.++|+.|++.|.  +|+++|.+
T Consensus         1 m~~~~~kI~ViGaG~vG~~~a~~l~~~~~~~~l~l~D~~   39 (326)
T 3pqe_A            1 MNKHVNKVALIGAGFVGSSYAFALINQGITDELVVIDVN   39 (326)
T ss_dssp             -CCSCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSC
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHhCCCCceEEEEecc
Confidence            544 4799999999999999999999997  89999974

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*

Probab=95.06  E-value=0.023  Score=48.51  Aligned_cols=34  Identities=21%  Similarity=0.402  Sum_probs=31.5

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCC-eEEEeccCC
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGL-KVLHMDRND   37 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~-~V~vlE~~~   37 (328)
                      ..+|+|||+|..|.+.|+.|++.|+ +|.++|.+.
T Consensus         7 ~~kI~viGaG~vG~~~a~~l~~~~~~~v~L~Di~~   41 (324)
T 3gvi_A            7 RNKIALIGSGMIGGTLAHLAGLKELGDVVLFDIAE   41 (324)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCc
Confidence            5689999999999999999999999 999999865

>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6

Probab=95.06  E-value=0.015  Score=49.88  Aligned_cols=30  Identities=30%  Similarity=0.226  Sum_probs=29.0

Q ss_pred             cEEEECCChhHHHHHHhhhhCCCeEEEecc
Q 020312            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDR   35 (328)
Q Consensus         6 dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~   35 (328)
                      +|.|||+|..|...|..|+++|++|+++++
T Consensus         2 ~I~iiG~G~mG~~~a~~L~~~g~~V~~~~r   31 (335)
T 1txg_A            2 IVSILGAGAMGSALSVPLVDNGNEVRIWGT   31 (335)
T ss_dssp             EEEEESCCHHHHHHHHHHHHHCCEEEEECC
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCeEEEEEc
Confidence            699999999999999999999999999998

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=95.05  E-value=0.02  Score=50.74  Aligned_cols=33  Identities=18%  Similarity=0.186  Sum_probs=30.2

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~   37 (328)
                      .++|.|||.|..|+..|..|++ |++|++++++.
T Consensus        36 ~mkIaVIGlG~mG~~lA~~La~-G~~V~~~D~~~   68 (432)
T 3pid_A           36 FMKITISGTGYVGLSNGVLIAQ-NHEVVALDIVQ   68 (432)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHT-TSEEEEECSCH
T ss_pred             CCEEEEECcCHHHHHHHHHHHc-CCeEEEEecCH
Confidence            3689999999999999999998 99999999864

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*

Probab=95.05  E-value=0.022  Score=48.44  Aligned_cols=33  Identities=15%  Similarity=0.209  Sum_probs=29.8

Q ss_pred             ccEEEECCChhHHHHHHhhhhC--CCeEEEeccCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVD--GLKVLHMDRND   37 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~--G~~V~vlE~~~   37 (328)
                      ++|+|||+|..|.+.|..|++.  |++|+++|.+.
T Consensus         1 mkI~VIGaG~vG~~la~~la~~~~g~~V~l~D~~~   35 (310)
T 1guz_A            1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVE   35 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence            3799999999999999999985  79999999864

>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*

Probab=95.04  E-value=0.019  Score=50.76  Aligned_cols=31  Identities=29%  Similarity=0.263  Sum_probs=28.9

Q ss_pred             cEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (328)
Q Consensus         6 dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~   37 (328)
                      +|.|||.|..|+..|..|++ |++|++++++.
T Consensus         2 kI~VIG~G~vG~~~A~~La~-G~~V~~~d~~~   32 (402)
T 1dlj_A            2 KIAVAGSGYVGLSLGVLLSL-QNEVTIVDILP   32 (402)
T ss_dssp             EEEEECCSHHHHHHHHHHTT-TSEEEEECSCH
T ss_pred             EEEEECCCHHHHHHHHHHhC-CCEEEEEECCH
Confidence            69999999999999999999 99999999853

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=95.01  E-value=0.023  Score=52.08  Aligned_cols=32  Identities=28%  Similarity=0.320  Sum_probs=30.1

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRN   36 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~   36 (328)
                      -+++|||||.+|+-+|..|++.|.+|+|+|++
T Consensus       211 ~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~  242 (519)
T 3qfa_A          211 GKTLVVGASYVALECAGFLAGIGLDVTVMVRS  242 (519)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCeEEEEecc
Confidence            46999999999999999999999999999985

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=95.01  E-value=0.023  Score=51.60  Aligned_cols=33  Identities=24%  Similarity=0.241  Sum_probs=30.9

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~   37 (328)
                      -+++|||||.+|+-+|..|++.|.+|+++|+..
T Consensus       186 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~  218 (488)
T 3dgz_A          186 GKTLVVGASYVALECAGFLTGIGLDTTVMMRSI  218 (488)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCceEEEEcCc
Confidence            479999999999999999999999999999864

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=95.00  E-value=0.021  Score=51.35  Aligned_cols=35  Identities=26%  Similarity=0.174  Sum_probs=31.6

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCC-eEEEeccCCCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGL-KVLHMDRNDYY   39 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~-~V~vlE~~~~~   39 (328)
                      .+|+|||||.+|+-+|..|.+.|. +|+++++++..
T Consensus       265 k~VvVIGgG~~a~d~A~~~~r~Ga~~Vtiv~r~~~~  300 (456)
T 2vdc_G          265 KHVVVLGGGDTAMDCVRTAIRQGATSVKCLYRRDRK  300 (456)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCST
T ss_pred             CEEEEECCChhHHHHHHHHHHcCCCEEEEEEeCCcc
Confidence            579999999999999999999997 59999998764

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=95.00  E-value=0.021  Score=47.92  Aligned_cols=33  Identities=18%  Similarity=0.215  Sum_probs=30.9

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~   37 (328)
                      ++|.|||.|..|...|..|+++|++|++++++.
T Consensus         2 ~~i~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~   34 (287)
T 3pef_A            2 QKFGFIGLGIMGSAMAKNLVKAGCSVTIWNRSP   34 (287)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSG
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCCeEEEEcCCH
Confidence            479999999999999999999999999999874

>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}

Probab=95.00  E-value=0.018  Score=49.94  Aligned_cols=34  Identities=26%  Similarity=0.322  Sum_probs=31.6

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCC-eEEEeccCC
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGL-KVLHMDRND   37 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~-~V~vlE~~~   37 (328)
                      +.+|+|+|+|.+|..||..|...|. +|+++|++.
T Consensus       188 d~kVVi~GAGaAG~~iA~ll~~~Ga~~I~v~D~~G  222 (398)
T 2a9f_A          188 EVSIVVNGGGSAGLSITRKLLAAGATKVTVVDKFG  222 (398)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTE
T ss_pred             ccEEEEECCCHHHHHHHHHHHHcCCCeEEEEECCC
Confidence            5689999999999999999999998 999999974

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=95.00  E-value=0.051  Score=48.96  Aligned_cols=43  Identities=23%  Similarity=0.312  Sum_probs=39.6

Q ss_pred             CCCcccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCccc
Q 020312            1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (328)
Q Consensus         1 ~~~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~   44 (328)
                      |+.++||+|||||++|++||.+|+++|++|+|+|++ .+||.+.
T Consensus         1 M~~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~-~~GG~~~   43 (467)
T 1zk7_A            1 MEPPVQVAVIGSGGAAMAAALKAVEQGAQVTLIERG-TIGGTCV   43 (467)
T ss_dssp             CCCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESS-STTHHHH
T ss_pred             CCCcCCEEEECCCHHHHHHHHHHHHCCCEEEEEeCC-CCCcccc
Confidence            777899999999999999999999999999999998 6788654

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=94.98  E-value=0.023  Score=48.46  Aligned_cols=33  Identities=21%  Similarity=0.257  Sum_probs=30.9

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~   37 (328)
                      ++|.|||.|..|...|..|+++|++|++++++.
T Consensus        32 ~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~   64 (320)
T 4dll_A           32 RKITFLGTGSMGLPMARRLCEAGYALQVWNRTP   64 (320)
T ss_dssp             SEEEEECCTTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CEEEEECccHHHHHHHHHHHhCCCeEEEEcCCH
Confidence            589999999999999999999999999999864

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=94.97  E-value=0.011  Score=47.43  Aligned_cols=34  Identities=12%  Similarity=0.189  Sum_probs=30.5

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEE-eccCC
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLH-MDRND   37 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~v-lE~~~   37 (328)
                      .++|.|||+|..|.+.|..|+++|++|++ ++++.
T Consensus        23 mmkI~IIG~G~mG~~la~~l~~~g~~V~~v~~r~~   57 (220)
T 4huj_A           23 MTTYAIIGAGAIGSALAERFTAAQIPAIIANSRGP   57 (220)
T ss_dssp             SCCEEEEECHHHHHHHHHHHHHTTCCEEEECTTCG
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCCH
Confidence            36899999999999999999999999999 87753

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=94.96  E-value=0.018  Score=50.00  Aligned_cols=34  Identities=21%  Similarity=0.152  Sum_probs=31.2

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~   37 (328)
                      ..+|+|||+|..|+.+|..|...|.+|++++++.
T Consensus       184 ~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~  217 (381)
T 3p2y_A          184 PASALVLGVGVAGLQALATAKRLGAKTTGYDVRP  217 (381)
T ss_dssp             CCEEEEESCSHHHHHHHHHHHHHTCEEEEECSSG
T ss_pred             CCEEEEECchHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            4689999999999999999999999999999864

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=94.96  E-value=0.044  Score=49.79  Aligned_cols=40  Identities=13%  Similarity=0.218  Sum_probs=35.9

Q ss_pred             CCCcccEEEECCChhHHHHHHhhhhC--CCeEEEeccCCCCC
Q 020312            1 MDEEYDVIVLGTGLKECILSGLLSVD--GLKVLHMDRNDYYG   40 (328)
Q Consensus         1 ~~~~~dvvIvG~G~aGl~aA~~L~~~--G~~V~vlE~~~~~G   40 (328)
                      |+.++||+|||||++|++||..|.++  |.+|+|+|+++..+
T Consensus         8 ~~~~~~vvIIGgG~AGl~aA~~L~~~~~g~~V~lie~~~~~~   49 (493)
T 1m6i_A            8 APSHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELP   49 (493)
T ss_dssp             CCSEEEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSSCC
T ss_pred             CCCcCCEEEECChHHHHHHHHHHHhcCCCCeEEEEeCCCCCC
Confidence            45679999999999999999999887  89999999998765

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=94.96  E-value=0.023  Score=48.00  Aligned_cols=35  Identities=26%  Similarity=0.220  Sum_probs=32.8

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY   39 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~   39 (328)
                      .+++|||+|.+|+-+|..|++.|.+|+++++++.+
T Consensus       148 ~~v~viG~g~~~~e~a~~l~~~g~~v~~~~~~~~~  182 (315)
T 3r9u_A          148 KEVAVLGGGDTALEEALYLANICSKIYLIHRRDEF  182 (315)
T ss_dssp             SEEEEECCBHHHHHHHHHHHTTSSEEEEECSSSSC
T ss_pred             CEEEEECCCHHHHHHHHHHHhhCCEEEEEEeCCCC
Confidence            57999999999999999999999999999998776

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=94.96  E-value=0.024  Score=46.38  Aligned_cols=34  Identities=29%  Similarity=0.338  Sum_probs=31.3

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~   37 (328)
                      ..+|.|||+|..|.+.|..|+++|++|++++++.
T Consensus        19 ~~kIgiIG~G~mG~alA~~L~~~G~~V~~~~r~~   52 (245)
T 3dtt_A           19 GMKIAVLGTGTVGRTMAGALADLGHEVTIGTRDP   52 (245)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCCh
Confidence            4689999999999999999999999999998854

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=94.92  E-value=0.022  Score=48.22  Aligned_cols=37  Identities=27%  Similarity=0.256  Sum_probs=33.8

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG   41 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG   41 (328)
                      .+|+|||+|.+|+-+|..|++.|.+|+++++++.+..
T Consensus       155 ~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~~~~~~~~  191 (323)
T 3f8d_A          155 RVVAVIGGGDSALEGAEILSSYSTKVYLIHRRDTFKA  191 (323)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSSEEEEECSSSSCCS
T ss_pred             CEEEEECCCHHHHHHHHHHHHhCCeEEEEEeCCCCCc
Confidence            5799999999999999999999999999999877654

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=94.91  E-value=0.019  Score=51.84  Aligned_cols=38  Identities=13%  Similarity=0.134  Sum_probs=34.2

Q ss_pred             cccEEEECCChhHHHHHHhhhhC-CCeEEEeccCCCCCC
Q 020312            4 EYDVIVLGTGLKECILSGLLSVD-GLKVLHMDRNDYYGG   41 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~-G~~V~vlE~~~~~GG   41 (328)
                      ..+++|||+|.+|+-+|..|++. |.+|+++|+++++..
T Consensus       159 ~~~vvViGgG~~g~e~A~~l~~~~g~~Vtlv~~~~~~l~  197 (472)
T 3iwa_A          159 VSKAVIVGGGFIGLEMAVSLADMWGIDTTVVELADQIMP  197 (472)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHHCCEEEEECSSSSSST
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhcCCcEEEEEccCcccc
Confidence            35899999999999999999999 999999999886544

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=94.89  E-value=0.029  Score=47.56  Aligned_cols=34  Identities=32%  Similarity=0.514  Sum_probs=31.5

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~   37 (328)
                      ..+|.|||.|..|...|..|+++|++|++++++.
T Consensus         9 ~~~IgiIG~G~mG~~~A~~l~~~G~~V~~~dr~~   42 (306)
T 3l6d_A            9 EFDVSVIGLGAMGTIMAQVLLKQGKRVAIWNRSP   42 (306)
T ss_dssp             SCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            4689999999999999999999999999999864

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=94.87  E-value=0.025  Score=47.30  Aligned_cols=33  Identities=9%  Similarity=-0.063  Sum_probs=30.5

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~   38 (328)
                      .+|+|||+|.+|+-+|..|++.| +|+++++++.
T Consensus       142 ~~v~vvG~G~~~~e~a~~l~~~g-~v~~v~~~~~  174 (297)
T 3fbs_A          142 GKIGVIAASPMAIHHALMLPDWG-ETTFFTNGIV  174 (297)
T ss_dssp             CEEEEECCSTTHHHHHHHGGGTS-EEEEECTTTC
T ss_pred             CEEEEEecCccHHHHHHHhhhcC-cEEEEECCCC
Confidence            57999999999999999999999 9999998765

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=94.86  E-value=0.024  Score=50.24  Aligned_cols=35  Identities=29%  Similarity=0.390  Sum_probs=31.7

Q ss_pred             CcccEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (328)
Q Consensus         3 ~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~   37 (328)
                      .+.+|+|||.|-.|...|..|.+.|++|+|+|.+.
T Consensus         3 ~~~~viIiG~Gr~G~~va~~L~~~g~~vvvId~d~   37 (413)
T 3l9w_A            3 HGMRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDP   37 (413)
T ss_dssp             -CCSEEEECCSHHHHHHHHHHHHTTCCEEEEECCH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEECCH
Confidence            35689999999999999999999999999999864

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=94.81  E-value=0.03  Score=47.66  Aligned_cols=37  Identities=22%  Similarity=0.211  Sum_probs=33.6

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG   41 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG   41 (328)
                      .+++|||+|.+|+-+|..|++.|.+|+++++++.+.+
T Consensus       155 ~~v~vvG~g~~~~e~a~~l~~~~~~v~~~~~~~~~~~  191 (332)
T 3lzw_A          155 RRVAILGGGDSAVDWALMLEPIAKEVSIIHRRDKFRA  191 (332)
T ss_dssp             CEEEEECSSHHHHHHHHHHTTTBSEEEEECSSSSCSS
T ss_pred             CEEEEECCCHhHHHHHHHHHhhCCeEEEEEecCcCCc
Confidence            4799999999999999999999999999999887643

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=94.77  E-value=0.028  Score=44.88  Aligned_cols=33  Identities=33%  Similarity=0.297  Sum_probs=30.0

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEeccC
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRN   36 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~   36 (328)
                      ..+|.|||+|..|...|..|++.|++|++++++
T Consensus        28 ~~~I~iiG~G~~G~~la~~l~~~g~~V~~~~r~   60 (215)
T 2vns_A           28 APKVGILGSGDFARSLATRLVGSGFKVVVGSRN   60 (215)
T ss_dssp             -CCEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            368999999999999999999999999999875

>3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}

Probab=94.77  E-value=0.012  Score=47.40  Aligned_cols=33  Identities=15%  Similarity=0.122  Sum_probs=30.9

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEeccC
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRN   36 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~   36 (328)
                      .++|.|||.|..|.+.|..|+++|++|+++++.
T Consensus         6 ~mkI~IIG~G~~G~sLA~~L~~~G~~V~~~~~~   38 (232)
T 3dfu_A            6 RLRVGIFDDGSSTVNMAEKLDSVGHYVTVLHAP   38 (232)
T ss_dssp             CCEEEEECCSCCCSCHHHHHHHTTCEEEECSSG
T ss_pred             CcEEEEEeeCHHHHHHHHHHHHCCCEEEEecCH
Confidence            478999999999999999999999999999875

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}

Probab=94.75  E-value=0.033  Score=47.49  Aligned_cols=35  Identities=20%  Similarity=0.283  Sum_probs=31.6

Q ss_pred             CcccEEEECCChhHHHHHHhhhhCCC-eEEEeccCC
Q 020312            3 EEYDVIVLGTGLKECILSGLLSVDGL-KVLHMDRND   37 (328)
Q Consensus         3 ~~~dvvIvG~G~aGl~aA~~L~~~G~-~V~vlE~~~   37 (328)
                      +..+|+|||+|..|.+.|+.|++.|. +|.++|.+.
T Consensus         4 ~~~kI~iiGaG~vG~~~a~~l~~~~~~~v~l~Di~~   39 (321)
T 3p7m_A            4 ARKKITLVGAGNIGGTLAHLALIKQLGDVVLFDIAQ   39 (321)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCCh
Confidence            35689999999999999999999988 999999865

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=94.74  E-value=0.023  Score=49.20  Aligned_cols=33  Identities=30%  Similarity=0.404  Sum_probs=30.9

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCC-eEEEeccC
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGL-KVLHMDRN   36 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~-~V~vlE~~   36 (328)
                      +.+|+|+|+|.+|..+|..|...|. +|++++++
T Consensus       192 ~~kVVv~GAGaAG~~iAkll~~~G~~~I~v~Dr~  225 (388)
T 1vl6_A          192 EVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRK  225 (388)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETT
T ss_pred             CcEEEEECCCHHHHHHHHHHHhCCCCeEEEEECC
Confidence            5789999999999999999999997 89999997

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*

Probab=94.74  E-value=0.03  Score=47.48  Aligned_cols=33  Identities=15%  Similarity=0.346  Sum_probs=30.2

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCC-eEEEeccCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGL-KVLHMDRND   37 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~-~V~vlE~~~   37 (328)
                      .+|+|||+|-.|.+.|+.|+..|+ +|.++|.+.
T Consensus         3 ~kI~VIGaG~vG~~~a~~la~~g~~~v~L~Di~~   36 (309)
T 1ur5_A            3 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVE   36 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCeEEEEeCCc
Confidence            489999999999999999999997 999999764

>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1

Probab=94.73  E-value=0.025  Score=48.23  Aligned_cols=36  Identities=17%  Similarity=0.298  Sum_probs=32.3

Q ss_pred             CCCcccEEEECCChhHHHHHHhhhhCCC--eEEEeccC
Q 020312            1 MDEEYDVIVLGTGLKECILSGLLSVDGL--KVLHMDRN   36 (328)
Q Consensus         1 ~~~~~dvvIvG~G~aGl~aA~~L~~~G~--~V~vlE~~   36 (328)
                      |.+..+|+|||+|-.|.+.|+.|+..+.  ++.++|.+
T Consensus         2 ~~~~~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~   39 (318)
T 1ez4_A            2 MPNHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVV   39 (318)
T ss_dssp             BTTBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCC
Confidence            5667899999999999999999999886  89999974

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*

Probab=94.72  E-value=0.026  Score=48.08  Aligned_cols=34  Identities=15%  Similarity=0.270  Sum_probs=30.5

Q ss_pred             CcccEEEECCChhHHHHHHhhhhCCC--eEEEeccC
Q 020312            3 EEYDVIVLGTGLKECILSGLLSVDGL--KVLHMDRN   36 (328)
Q Consensus         3 ~~~dvvIvG~G~aGl~aA~~L~~~G~--~V~vlE~~   36 (328)
                      ..++|+|||+|-.|.+.|+.|+..|.  +|.++|.+
T Consensus         5 ~~~KI~IIGaG~vG~~la~~l~~~~~~~ei~L~Di~   40 (317)
T 3d0o_A            5 KGNKVVLIGNGAVGSSYAFSLVNQSIVDELVIIDLD   40 (317)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHCSCSEEEEECSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence            45799999999999999999999884  89999874

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=94.71  E-value=0.022  Score=47.80  Aligned_cols=33  Identities=24%  Similarity=0.249  Sum_probs=30.8

Q ss_pred             cEEEECCChhHHHHHHhhhhCCCeEEEeccCCC
Q 020312            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (328)
Q Consensus         6 dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~   38 (328)
                      +|.|||.|..|...|..|+++|++|++++++..
T Consensus         3 ~I~iiG~G~mG~~~a~~l~~~G~~V~~~dr~~~   35 (287)
T 3pdu_A            3 TYGFLGLGIMGGPMAANLVRAGFDVTVWNRNPA   35 (287)
T ss_dssp             CEEEECCSTTHHHHHHHHHHHTCCEEEECSSGG
T ss_pred             eEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHH
Confidence            799999999999999999999999999998753

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=94.71  E-value=0.031  Score=44.44  Aligned_cols=31  Identities=29%  Similarity=0.228  Sum_probs=29.1

Q ss_pred             cEEEEC-CChhHHHHHHhhhhCCCeEEEeccC
Q 020312            6 DVIVLG-TGLKECILSGLLSVDGLKVLHMDRN   36 (328)
Q Consensus         6 dvvIvG-~G~aGl~aA~~L~~~G~~V~vlE~~   36 (328)
                      +|+||| +|..|...|..|+++|++|++++++
T Consensus         2 ~i~iiGa~G~~G~~ia~~l~~~g~~V~~~~r~   33 (212)
T 1jay_A            2 RVALLGGTGNLGKGLALRLATLGHEIVVGSRR   33 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTCEEEEEESS
T ss_pred             eEEEEcCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            689999 9999999999999999999999875

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=94.63  E-value=0.019  Score=46.56  Aligned_cols=33  Identities=9%  Similarity=0.031  Sum_probs=29.8

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~   37 (328)
                      +..++|+|+|-.|...|..|.+.|+ |+++|++.
T Consensus         9 ~~~viI~G~G~~G~~la~~L~~~g~-v~vid~~~   41 (234)
T 2aef_A            9 SRHVVICGWSESTLECLRELRGSEV-FVLAEDEN   41 (234)
T ss_dssp             -CEEEEESCCHHHHHHHHHSTTSEE-EEEESCGG
T ss_pred             CCEEEEECCChHHHHHHHHHHhCCe-EEEEECCH
Confidence            4689999999999999999999999 99999854

>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*

Probab=94.59  E-value=0.024  Score=50.13  Aligned_cols=30  Identities=37%  Similarity=0.464  Sum_probs=28.1

Q ss_pred             ccEEEECCChhHHHHHHhhhh-CCCeEEEec
Q 020312            5 YDVIVLGTGLKECILSGLLSV-DGLKVLHMD   34 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~-~G~~V~vlE   34 (328)
                      ++|+|||+|..|.+.|..|++ +|++|++++
T Consensus         3 mkI~ViGaG~~G~~~a~~La~~~G~~V~~~~   33 (404)
T 3c7a_A            3 VKVCVCGGGNGAHTLSGLAASRDGVEVRVLT   33 (404)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTSTTEEEEEEC
T ss_pred             ceEEEECCCHHHHHHHHHHHhCCCCEEEEEe
Confidence            479999999999999999998 599999998

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1

Probab=94.54  E-value=0.026  Score=48.12  Aligned_cols=31  Identities=16%  Similarity=0.277  Sum_probs=29.4

Q ss_pred             cEEEECCChhHHHHHHhhhhCCC--eEEEeccC
Q 020312            6 DVIVLGTGLKECILSGLLSVDGL--KVLHMDRN   36 (328)
Q Consensus         6 dvvIvG~G~aGl~aA~~L~~~G~--~V~vlE~~   36 (328)
                      +|+|||+|..|.+.|..|++.|+  +|++++++
T Consensus         2 kI~VIGaG~~G~~la~~l~~~g~~~~V~l~D~~   34 (319)
T 1a5z_A            2 KIGIVGLGRVGSSTAFALLMKGFAREMVLIDVD   34 (319)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCC
Confidence            69999999999999999999999  99999985

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=94.47  E-value=0.031  Score=49.69  Aligned_cols=32  Identities=25%  Similarity=0.294  Sum_probs=30.2

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRN   36 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~   36 (328)
                      .+|+|||.|-.||..|..|+++|++|+.+|-+
T Consensus        22 ~~IaViGlGYVGLp~A~~~A~~G~~V~g~Did   53 (444)
T 3vtf_A           22 ASLSVLGLGYVGVVHAVGFALLGHRVVGYDVN   53 (444)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCEEEEECSC
T ss_pred             CEEEEEccCHHHHHHHHHHHhCCCcEEEEECC
Confidence            58999999999999999999999999999875

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=94.44  E-value=0.028  Score=47.75  Aligned_cols=33  Identities=15%  Similarity=0.190  Sum_probs=30.5

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCC-eEEEeccC
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGL-KVLHMDRN   36 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~-~V~vlE~~   36 (328)
                      .++|.|||.|..|...|..|+++|+ +|++++++
T Consensus        24 ~~~I~iIG~G~mG~~~A~~L~~~G~~~V~~~dr~   57 (312)
T 3qsg_A           24 AMKLGFIGFGEAASAIASGLRQAGAIDMAAYDAA   57 (312)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHHSCCEEEEECSS
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCCeEEEEcCC
Confidence            3689999999999999999999999 99999985

>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A*

Probab=94.42  E-value=0.02  Score=49.55  Aligned_cols=35  Identities=11%  Similarity=0.141  Sum_probs=32.0

Q ss_pred             cccEEEECCChhHHHHHHhhhhCC-------CeEEEeccCCC
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDG-------LKVLHMDRNDY   38 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G-------~~V~vlE~~~~   38 (328)
                      .++|.|||+|..|.+.|..|+++|       ++|++++++..
T Consensus         8 ~mkI~iIG~G~mG~~~a~~l~~~g~~~~~~~~~V~~~~r~~~   49 (354)
T 1x0v_A            8 SKKVCIVGSGNWGSAIAKIVGGNAAQLAQFDPRVTMWVFEED   49 (354)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHCTTEEEEEEEECCCCB
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEcChh
Confidence            358999999999999999999999       99999998765

>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina}

Probab=94.38  E-value=0.12  Score=47.33  Aligned_cols=36  Identities=25%  Similarity=0.449  Sum_probs=33.3

Q ss_pred             CcccEEEECCChhHHHHHHhhhh------------CCCeEEEeccCCC
Q 020312            3 EEYDVIVLGTGLKECILSGLLSV------------DGLKVLHMDRNDY   38 (328)
Q Consensus         3 ~~~dvvIvG~G~aGl~aA~~L~~------------~G~~V~vlE~~~~   38 (328)
                      ..+||+|||||++|+++|..|++            +|.+|+|+|+.+.
T Consensus         6 ~~~dVvIVGgG~aGl~aA~~La~~~~~~~~~~~~~~G~~V~liE~~~~   53 (526)
T 2pyx_A            6 PITEIIIVGGGTAGWITAGLLAAEHNVDKGVLAHSPKLNITLIESPDV   53 (526)
T ss_dssp             CCCEEEEECCHHHHHHHHHHHHHHHHEETTEECSSCSCEEEEEECSSC
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhhhccccccccCCCCCeEEEEeCCCC
Confidence            36899999999999999999999            9999999999764

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=94.36  E-value=0.036  Score=46.69  Aligned_cols=33  Identities=27%  Similarity=0.299  Sum_probs=30.5

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~   37 (328)
                      ++|.|||+|..|...|..|++.|++|.+++++.
T Consensus         6 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~   38 (299)
T 1vpd_A            6 MKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNP   38 (299)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             ceEEEECchHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            479999999999999999999999999998853

>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum}

Probab=94.33  E-value=0.038  Score=45.52  Aligned_cols=35  Identities=9%  Similarity=0.072  Sum_probs=31.9

Q ss_pred             cccEEEECCChhHHHHHHhhhhCC----CeEEEeccCCC
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDG----LKVLHMDRNDY   38 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G----~~V~vlE~~~~   38 (328)
                      .++|.|||+|..|.+.|..|+++|    ++|++++++..
T Consensus         4 ~m~i~iiG~G~mG~~~a~~l~~~g~~~~~~v~~~~~~~~   42 (262)
T 2rcy_A            4 NIKLGFMGLGQMGSALAHGIANANIIKKENLFYYGPSKK   42 (262)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHHHTSSCGGGEEEECSSCC
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCCCCCeEEEEeCCcc
Confidence            568999999999999999999999    79999998754

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*

Probab=94.32  E-value=0.032  Score=46.87  Aligned_cols=33  Identities=9%  Similarity=0.004  Sum_probs=30.1

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCC--eEEEeccCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGL--KVLHMDRND   37 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~--~V~vlE~~~   37 (328)
                      ++|+|||+|..|.+.|+.|++.|+  +|.++|.+.
T Consensus         1 MkI~ViGaG~vG~~la~~l~~~~~~~~v~L~D~~~   35 (294)
T 1oju_A            1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAE   35 (294)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECCh
Confidence            379999999999999999999998  999999854

>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*

Probab=94.29  E-value=0.039  Score=49.91  Aligned_cols=34  Identities=18%  Similarity=0.199  Sum_probs=31.2

Q ss_pred             CcccEEEECCChhHHHHHHhhhhCCCeEEEeccC
Q 020312            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRN   36 (328)
Q Consensus         3 ~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~   36 (328)
                      .+.+|.|||.|..|...|..|+++|++|++++++
T Consensus        14 ~~~~IgvIGlG~MG~~lA~~La~~G~~V~v~~r~   47 (480)
T 2zyd_A           14 SKQQIGVVGMAVMGRNLALNIESRGYTVSIFNRS   47 (480)
T ss_dssp             -CBSEEEECCSHHHHHHHHHHHTTTCCEEEECSS
T ss_pred             CCCeEEEEccHHHHHHHHHHHHhCCCeEEEEeCC
Confidence            3578999999999999999999999999999885

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=94.27  E-value=0.087  Score=45.14  Aligned_cols=55  Identities=13%  Similarity=0.096  Sum_probs=43.2

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEecCceEEcCEEEECCCC
Q 020312          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSY  287 (328)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~~g~~~~ad~vV~~~~~  287 (328)
                      ..+.+.+.+.+++.|++++++++|++|..+ ++.+.+|+++++++.||+||++.+.
T Consensus        76 ~~~~~~l~~~~~~~~~~~~~~~~v~~i~~~-~~~~~~v~~~~g~~~~d~vV~AtG~  130 (357)
T 4a9w_A           76 AEVLAYLAQYEQKYALPVLRPIRVQRVSHF-GERLRVVARDGRQWLARAVISATGT  130 (357)
T ss_dssp             HHHHHHHHHHHHHTTCCEECSCCEEEEEEE-TTEEEEEETTSCEEEEEEEEECCCS
T ss_pred             HHHHHHHHHHHHHcCCEEEcCCEEEEEEEC-CCcEEEEEeCCCEEEeCEEEECCCC
Confidence            346666677788889999999999999987 6664437775559999999987664

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=94.27  E-value=0.035  Score=52.91  Aligned_cols=33  Identities=21%  Similarity=0.329  Sum_probs=30.7

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~   37 (328)
                      .+|.|||+|..|...|..|+++|++|+++|++.
T Consensus       313 ~kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~  345 (725)
T 2wtb_A          313 KKVAIIGGGLMGSGIATALILSNYPVILKEVNE  345 (725)
T ss_dssp             CCEEEECCSHHHHHHHHHHHTTTCCEEEECSSH
T ss_pred             cEEEEEcCCHhhHHHHHHHHhCCCEEEEEECCH
Confidence            469999999999999999999999999999864

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1

Probab=94.26  E-value=0.033  Score=47.22  Aligned_cols=32  Identities=19%  Similarity=0.295  Sum_probs=29.8

Q ss_pred             cEEEECCChhHHHHHHhhhhCC--CeEEEeccCC
Q 020312            6 DVIVLGTGLKECILSGLLSVDG--LKVLHMDRND   37 (328)
Q Consensus         6 dvvIvG~G~aGl~aA~~L~~~G--~~V~vlE~~~   37 (328)
                      +|+|||+|..|.+.|..|+++|  ++|++++++.
T Consensus         3 kI~VIGaG~~G~~la~~L~~~g~~~~V~l~d~~~   36 (309)
T 1hyh_A            3 KIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANE   36 (309)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEcCCH
Confidence            7999999999999999999999  7999999853

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=94.25  E-value=0.038  Score=49.72  Aligned_cols=35  Identities=17%  Similarity=0.206  Sum_probs=30.4

Q ss_pred             ccEEEECCChhHHHHHHhhh--------------------hCCC-eEEEeccCCCC
Q 020312            5 YDVIVLGTGLKECILSGLLS--------------------VDGL-KVLHMDRNDYY   39 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~--------------------~~G~-~V~vlE~~~~~   39 (328)
                      ..|+|||+|.+|+=+|..|+                    +.|. +|+|+++++..
T Consensus       146 ~~vvVIGgG~~g~e~A~~L~~~~~~l~~tdi~~~a~~~l~~~g~~~V~lv~r~~~~  201 (460)
T 1cjc_A          146 DTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRGPL  201 (460)
T ss_dssp             SEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSCGG
T ss_pred             CEEEEECCCHHHHHHHHHHhhchhhhccccccHHHHHHHhhCCCcEEEEEEcCChH
Confidence            57999999999999999999                    5686 79999986643

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=94.25  E-value=0.033  Score=50.38  Aligned_cols=32  Identities=19%  Similarity=0.294  Sum_probs=29.8

Q ss_pred             ccEEEECCChhHHHHHHhhhhC--CCeEEEeccC
Q 020312            5 YDVIVLGTGLKECILSGLLSVD--GLKVLHMDRN   36 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~--G~~V~vlE~~   36 (328)
                      ++|.|||.|..|+..|..|+++  |++|++++++
T Consensus        10 mkI~VIG~G~vG~~~A~~La~~g~g~~V~~~D~~   43 (481)
T 2o3j_A           10 SKVVCVGAGYVGGPTCAMIAHKCPHITVTVVDMN   43 (481)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSC
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECC
Confidence            5899999999999999999998  7999999875

>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*

Probab=94.16  E-value=0.037  Score=45.62  Aligned_cols=31  Identities=26%  Similarity=0.437  Sum_probs=29.3

Q ss_pred             cEEEECCChhHHHHHHhhhhCC-CeEEEeccC
Q 020312            6 DVIVLGTGLKECILSGLLSVDG-LKVLHMDRN   36 (328)
Q Consensus         6 dvvIvG~G~aGl~aA~~L~~~G-~~V~vlE~~   36 (328)
                      +|.|||+|..|...|..|++.| ++|++++++
T Consensus         2 ~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~r~   33 (263)
T 1yqg_A            2 NVYFLGGGNMAAAVAGGLVKQGGYRIYIANRG   33 (263)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSCEEEEECSS
T ss_pred             EEEEECchHHHHHHHHHHHHCCCCeEEEECCC
Confidence            6999999999999999999999 999999885

>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A

Probab=94.11  E-value=0.048  Score=49.17  Aligned_cols=35  Identities=17%  Similarity=0.206  Sum_probs=32.3

Q ss_pred             CcccEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (328)
Q Consensus         3 ~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~   37 (328)
                      ..++|.|||.|..|...|..|+++|++|++++++.
T Consensus         3 ~~~kIgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~   37 (484)
T 4gwg_A            3 AQADIALIGLAVMGQNLILNMNDHGFVVCAFNRTV   37 (484)
T ss_dssp             CCBSEEEECCSHHHHHHHHHHHHTTCCEEEECSST
T ss_pred             CCCEEEEEChhHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            35689999999999999999999999999999875

>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*

Probab=94.11  E-value=0.04  Score=48.91  Aligned_cols=33  Identities=27%  Similarity=0.349  Sum_probs=30.8

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~   37 (328)
                      .+..|||.|..|+..|..|+++|++|++++++.
T Consensus        12 ~~~~ViGlGyvGlp~A~~La~~G~~V~~~D~~~   44 (431)
T 3ojo_A           12 SKLTVVGLGYIGLPTSIMFAKHGVDVLGVDINQ   44 (431)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CccEEEeeCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            578899999999999999999999999999864

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=94.10  E-value=0.043  Score=46.76  Aligned_cols=33  Identities=15%  Similarity=0.139  Sum_probs=31.0

Q ss_pred             ccEEEECCChhHHHHHHhhhhCC-CeEEEeccCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDG-LKVLHMDRND   37 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G-~~V~vlE~~~   37 (328)
                      ++|.|||.|..|...|..|+++| ++|++++++.
T Consensus        25 m~IgvIG~G~mG~~lA~~L~~~G~~~V~~~dr~~   58 (317)
T 4ezb_A           25 TTIAFIGFGEAAQSIAGGLGGRNAARLAAYDLRF   58 (317)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCSEEEEECGGG
T ss_pred             CeEEEECccHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence            57999999999999999999999 9999999874

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=94.10  E-value=0.047  Score=45.46  Aligned_cols=32  Identities=28%  Similarity=0.412  Sum_probs=29.7

Q ss_pred             cEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (328)
Q Consensus         6 dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~   37 (328)
                      +|.|||+|..|.+.|..|++.|++|++++++.
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~   33 (279)
T 2f1k_A            2 KIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQ   33 (279)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEEcCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            69999999999999999999999999998753

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=94.08  E-value=0.042  Score=43.99  Aligned_cols=37  Identities=19%  Similarity=0.333  Sum_probs=31.4

Q ss_pred             CCCcccEEEECC-ChhHHHHHHhhhhCCCeEEEeccCC
Q 020312            1 MDEEYDVIVLGT-GLKECILSGLLSVDGLKVLHMDRND   37 (328)
Q Consensus         1 ~~~~~dvvIvG~-G~aGl~aA~~L~~~G~~V~vlE~~~   37 (328)
                      |...+.|+|.|| |..|...+.+|.++|++|.++.++.
T Consensus         1 M~~m~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~   38 (227)
T 3dhn_A            1 MEKVKKIVLIGASGFVGSALLNEALNRGFEVTAVVRHP   38 (227)
T ss_dssp             --CCCEEEEETCCHHHHHHHHHHHHTTTCEEEEECSCG
T ss_pred             CCCCCEEEEEcCCchHHHHHHHHHHHCCCEEEEEEcCc
Confidence            555568999996 9999999999999999999998864

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=94.01  E-value=0.04  Score=52.74  Aligned_cols=36  Identities=19%  Similarity=0.176  Sum_probs=32.6

Q ss_pred             ccEEEEC--CChhHHHHHHhhhhCCCeEEEeccCCCCCC
Q 020312            5 YDVIVLG--TGLKECILSGLLSVDGLKVLHMDRNDYYGG   41 (328)
Q Consensus         5 ~dvvIvG--~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG   41 (328)
                      .+|+|||  ||.+|+-+|..|++.|.+|+|+|+++ +..
T Consensus       529 k~VvVIG~GgG~~g~e~A~~l~~~G~~Vtlv~~~~-l~~  566 (729)
T 1o94_A          529 KRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVH-LAN  566 (729)
T ss_dssp             SEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSC-TTH
T ss_pred             CeEEEEcCCCCchHHHHHHHHHHcCCEEEEEeccc-ccc
Confidence            4799999  99999999999999999999999987 543

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=94.00  E-value=0.058  Score=42.27  Aligned_cols=33  Identities=15%  Similarity=0.223  Sum_probs=30.4

Q ss_pred             ccEEEECC-ChhHHHHHHhhhhCCCeEEEeccCC
Q 020312            5 YDVIVLGT-GLKECILSGLLSVDGLKVLHMDRND   37 (328)
Q Consensus         5 ~dvvIvG~-G~aGl~aA~~L~~~G~~V~vlE~~~   37 (328)
                      +.|+|+|| |-.|...+.+|.++|++|+++.++.
T Consensus         4 ~~ilVtGatG~iG~~l~~~l~~~g~~V~~~~r~~   37 (206)
T 1hdo_A            4 KKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDS   37 (206)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCG
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHCCCeEEEEEeCh
Confidence            67999998 9999999999999999999998854

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=94.00  E-value=0.06  Score=45.02  Aligned_cols=33  Identities=12%  Similarity=0.178  Sum_probs=30.5

Q ss_pred             ccEEEECC-ChhHHHHHHhhhhCCCeEEEeccCC
Q 020312            5 YDVIVLGT-GLKECILSGLLSVDGLKVLHMDRND   37 (328)
Q Consensus         5 ~dvvIvG~-G~aGl~aA~~L~~~G~~V~vlE~~~   37 (328)
                      ++|.|||+ |..|...|..|+++|++|++++++.
T Consensus        12 m~I~iIG~tG~mG~~la~~l~~~g~~V~~~~r~~   45 (286)
T 3c24_A           12 KTVAILGAGGKMGARITRKIHDSAHHLAAIEIAP   45 (286)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHSSSEEEEECCSH
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            48999999 9999999999999999999999753

>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber}

Probab=93.97  E-value=0.044  Score=46.52  Aligned_cols=33  Identities=21%  Similarity=0.368  Sum_probs=30.1

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCC--eEEEeccCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGL--KVLHMDRND   37 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~--~V~vlE~~~   37 (328)
                      ++|+|||+|..|.++|+.|++.|.  +|.++|.+.
T Consensus         1 Mkv~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~   35 (314)
T 3nep_X            1 MKVTVIGAGNVGATVAECVARQDVAKEVVMVDIKD   35 (314)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSSEEEEECSST
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCch
Confidence            479999999999999999999986  999999865

>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*

Probab=93.96  E-value=0.051  Score=45.66  Aligned_cols=32  Identities=19%  Similarity=0.123  Sum_probs=29.9

Q ss_pred             cEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (328)
Q Consensus         6 dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~   37 (328)
                      +|.|||.|..|...|..|++.|++|++++++.
T Consensus         2 ~i~iiG~G~mG~~~a~~l~~~g~~V~~~~~~~   33 (296)
T 2gf2_A            2 PVGFIGLGNMGNPMAKNLMKHGYPLIIYDVFP   33 (296)
T ss_dssp             CEEEECCSTTHHHHHHHHHHTTCCEEEECSST
T ss_pred             eEEEEeccHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            69999999999999999999999999999864

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=93.95  E-value=0.057  Score=44.81  Aligned_cols=33  Identities=15%  Similarity=0.070  Sum_probs=30.0

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEeccC
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRN   36 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~   36 (328)
                      ...++|+|+|-.|..+|..|++.|.+|+|+.++
T Consensus       119 ~k~vlViGaGg~g~a~a~~L~~~G~~V~v~~R~  151 (271)
T 1nyt_A          119 GLRILLIGAGGASRGVLLPLLSLDCAVTITNRT  151 (271)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCCEEEEEECC
Confidence            357999999999999999999999999999874

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=93.94  E-value=0.06  Score=45.74  Aligned_cols=33  Identities=24%  Similarity=0.422  Sum_probs=30.8

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCC--eEEEeccCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGL--KVLHMDRND   37 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~--~V~vlE~~~   37 (328)
                      .+|.|||.|..|.+.|..|+++|+  +|++++++.
T Consensus        34 ~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~   68 (314)
T 3ggo_A           34 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINP   68 (314)
T ss_dssp             SEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred             CEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCH
Confidence            589999999999999999999999  999999864

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=93.93  E-value=0.058  Score=44.96  Aligned_cols=34  Identities=21%  Similarity=0.276  Sum_probs=31.3

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~   37 (328)
                      .+.|+|.|+|..|...+..|.++|++|+++.++.
T Consensus         3 ~~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~   36 (286)
T 3gpi_A            3 LSKILIAGCGDLGLELARRLTAQGHEVTGLRRSA   36 (286)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCCEEEEECTT
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            4589999999999999999999999999998874

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=93.89  E-value=0.041  Score=45.07  Aligned_cols=34  Identities=24%  Similarity=0.442  Sum_probs=30.5

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCC-eEEEeccCC
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGL-KVLHMDRND   37 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~-~V~vlE~~~   37 (328)
                      ..+|+|||+|-.|..+|..|++.|. +++|++...
T Consensus        31 ~~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d~   65 (249)
T 1jw9_B           31 DSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDT   65 (249)
T ss_dssp             HCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             CCeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCCC
Confidence            3589999999999999999999996 899999854

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=93.83  E-value=0.06  Score=45.39  Aligned_cols=33  Identities=21%  Similarity=0.462  Sum_probs=30.5

Q ss_pred             ccEEEEC-CChhHHHHHHhhhhCCCeEEEeccCC
Q 020312            5 YDVIVLG-TGLKECILSGLLSVDGLKVLHMDRND   37 (328)
Q Consensus         5 ~dvvIvG-~G~aGl~aA~~L~~~G~~V~vlE~~~   37 (328)
                      .+|.||| .|..|.+.|..|++.|++|++++++.
T Consensus        22 ~~I~iIGg~G~mG~~la~~l~~~G~~V~~~~~~~   55 (298)
T 2pv7_A           22 HKIVIVGGYGKLGGLFARYLRASGYPISILDRED   55 (298)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTC
T ss_pred             CEEEEEcCCCHHHHHHHHHHHhCCCeEEEEECCc
Confidence            3799999 99999999999999999999998765

>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A*

Probab=93.83  E-value=0.058  Score=48.71  Aligned_cols=33  Identities=18%  Similarity=0.157  Sum_probs=31.0

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEeccC
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRN   36 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~   36 (328)
                      +.+|.|||.|..|...|..|+++|++|++++++
T Consensus         5 ~~~IgvIG~G~mG~~lA~~L~~~G~~V~v~dr~   37 (474)
T 2iz1_A            5 QANFGVVGMAVMGKNLALNVESRGYTVAIYNRT   37 (474)
T ss_dssp             TBSEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             CCcEEEEeeHHHHHHHHHHHHhCCCEEEEEcCC
Confidence            578999999999999999999999999999885

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1

Probab=93.81  E-value=0.054  Score=46.16  Aligned_cols=33  Identities=15%  Similarity=0.052  Sum_probs=30.2

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCC--eEEEeccC
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGL--KVLHMDRN   36 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~--~V~vlE~~   36 (328)
                      ..+|+|||+|..|.++|+.|++.|.  +|.++|.+
T Consensus        21 ~~kV~ViGaG~vG~~~a~~la~~g~~~ev~L~Di~   55 (330)
T 3ldh_A           21 YNKITVVGCDAVGMADAISVLMKDLADEVALVDVM   55 (330)
T ss_dssp             CCEEEEESTTHHHHHHHHHHHHHCCCSEEEEECSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECC
Confidence            3689999999999999999999997  89999974

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=93.79  E-value=0.059  Score=47.50  Aligned_cols=34  Identities=24%  Similarity=0.281  Sum_probs=30.9

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~   37 (328)
                      ...|+|+|+|.+|+.+|..|...|.+|++++++.
T Consensus       172 g~~V~ViGaG~iG~~aa~~a~~~Ga~V~v~D~~~  205 (401)
T 1x13_A          172 PAKVMVIGAGVAGLAAIGAANSLGAIVRAFDTRP  205 (401)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCG
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            3579999999999999999999999999999854

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=93.76  E-value=0.053  Score=47.07  Aligned_cols=33  Identities=24%  Similarity=0.221  Sum_probs=30.4

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~   37 (328)
                      ..|+|+|+|.+|+.+|..|+..|.+|++++++.
T Consensus       168 ~~VlViGaGgvG~~aa~~a~~~Ga~V~v~dr~~  200 (361)
T 1pjc_A          168 GKVVILGGGVVGTEAAKMAVGLGAQVQIFDINV  200 (361)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            579999999999999999999999999998853

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=93.73  E-value=0.13  Score=46.30  Aligned_cols=42  Identities=24%  Similarity=0.366  Sum_probs=37.1

Q ss_pred             CCcccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCcc
Q 020312            2 DEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGES   43 (328)
Q Consensus         2 ~~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~   43 (328)
                      +++|||+|||||++|++||.+|+++|++|+|+|+++.+||..
T Consensus         1 ~~~~DVvVIGgG~aGl~aA~~la~~G~~V~liEk~~~~gG~~   42 (476)
T 3lad_A            1 SQKFDVIVIGAGPGGYVAAIKSAQLGLKTALIEKYKGKEGKT   42 (476)
T ss_dssp             CCCCSEEEECCSHHHHHHHHHHHHHTCCEEEEECCBCTTSSB
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHhCCCEEEEEeCCCccCCCC
Confidence            357999999999999999999999999999999998555543

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=93.70  E-value=0.035  Score=54.86  Aligned_cols=37  Identities=19%  Similarity=0.070  Sum_probs=33.7

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG   41 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG   41 (328)
                      ..|+|||+|..|+-+|..|++.|.+|+|+|+++.+..
T Consensus       285 k~vvViGgG~~g~E~A~~L~~~G~~Vtvv~~~~~~~~  321 (965)
T 2gag_A          285 ARIAVATTNDSAYELVRELAATGGVVAVIDARSSISA  321 (965)
T ss_dssp             SSEEEEESSTTHHHHHHHHGGGTCCSEEEESCSSCCH
T ss_pred             CeEEEEcCCHHHHHHHHHHHHcCCcEEEEECCCccch
Confidence            4799999999999999999999999999999887643

>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*

Probab=93.69  E-value=0.057  Score=48.50  Aligned_cols=33  Identities=18%  Similarity=0.188  Sum_probs=30.7

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEeccC
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRN   36 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~   36 (328)
                      ...|+|||+|-+|...|..|.+.|.+|+|++..
T Consensus        12 ~~~vlVvGgG~va~~k~~~L~~~ga~V~vi~~~   44 (457)
T 1pjq_A           12 DRDCLIVGGGDVAERKARLLLEAGARLTVNALT   44 (457)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTBEEEEEESS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCcCEEEEEcCC
Confidence            467999999999999999999999999999974

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=93.68  E-value=0.066  Score=46.94  Aligned_cols=34  Identities=21%  Similarity=0.191  Sum_probs=31.0

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~   37 (328)
                      ..+|+|+|+|..|+.+|..|...|.+|++++++.
T Consensus       172 g~~V~ViGaG~iG~~aa~~a~~~Ga~V~~~d~~~  205 (384)
T 1l7d_A          172 PARVLVFGVGVAGLQAIATAKRLGAVVMATDVRA  205 (384)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            4589999999999999999999999999999864

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=93.68  E-value=0.067  Score=44.20  Aligned_cols=33  Identities=27%  Similarity=0.430  Sum_probs=30.2

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~   37 (328)
                      ..++|||+|-+|-++|+.|++.|.+|+|+.|+.
T Consensus       119 k~vlvlGaGGaaraia~~L~~~G~~v~V~nRt~  151 (269)
T 3phh_A          119 QNALILGAGGSAKALACELKKQGLQVSVLNRSS  151 (269)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            479999999999999999999999999998753

>1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A*

Probab=93.68  E-value=0.049  Score=46.60  Aligned_cols=36  Identities=17%  Similarity=0.128  Sum_probs=32.4

Q ss_pred             CCCcccEEEECC-ChhHHHHHHhhhhCCC-------eEEEeccC
Q 020312            1 MDEEYDVIVLGT-GLKECILSGLLSVDGL-------KVLHMDRN   36 (328)
Q Consensus         1 ~~~~~dvvIvG~-G~aGl~aA~~L~~~G~-------~V~vlE~~   36 (328)
                      |...++|+|+|| |..|...+..|.++|+       +|.+++..
T Consensus         1 m~~~mkVlVtGaaGfIG~~l~~~L~~~g~~~~~~~~ev~l~D~~   44 (327)
T 1y7t_A            1 MKAPVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIP   44 (327)
T ss_dssp             CCCCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCG
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHhCCCCCCCCCCEEEEEeCC
Confidence            677789999998 9999999999999996       89999874

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=93.66  E-value=0.061  Score=44.74  Aligned_cols=33  Identities=24%  Similarity=0.451  Sum_probs=30.6

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~   37 (328)
                      ++|+|.|+|..|...+..|.++|++|+++.++.
T Consensus         6 ~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~   38 (286)
T 3ius_A            6 GTLLSFGHGYTARVLSRALAPQGWRIIGTSRNP   38 (286)
T ss_dssp             CEEEEETCCHHHHHHHHHHGGGTCEEEEEESCG
T ss_pred             CcEEEECCcHHHHHHHHHHHHCCCEEEEEEcCh
Confidence            579999999999999999999999999998864

>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum}

Probab=93.66  E-value=0.041  Score=48.04  Aligned_cols=34  Identities=18%  Similarity=0.345  Sum_probs=31.2

Q ss_pred             ccEEEECCChhHHHHHHhhhhCC-------CeEEEeccCCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDG-------LKVLHMDRNDY   38 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G-------~~V~vlE~~~~   38 (328)
                      ++|.|||+|..|.+.|..|+++|       ++|++++++..
T Consensus        22 ~kI~iIGaG~mG~alA~~L~~~G~~~~~~~~~V~~~~r~~~   62 (375)
T 1yj8_A           22 LKISILGSGNWASAISKVVGTNAKNNYLFENEVRMWIRDEF   62 (375)
T ss_dssp             BCEEEECCSHHHHHHHHHHHHHHHHCTTBCSCEEEECCSCC
T ss_pred             CEEEEECcCHHHHHHHHHHHHcCCccCCCCCeEEEEECChh
Confidence            47999999999999999999999       99999998754

>2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A*

Probab=93.65  E-value=0.062  Score=48.64  Aligned_cols=33  Identities=18%  Similarity=0.201  Sum_probs=30.8

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~   37 (328)
                      ++|.|||.|..|...|..|+++|++|++++++.
T Consensus         3 m~IgvIG~G~mG~~lA~~La~~G~~V~v~dr~~   35 (482)
T 2pgd_A            3 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTV   35 (482)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSST
T ss_pred             CeEEEEChHHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            579999999999999999999999999999853

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}

Probab=93.63  E-value=0.073  Score=44.40  Aligned_cols=34  Identities=15%  Similarity=0.188  Sum_probs=31.4

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCC---eEEEeccCC
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGL---KVLHMDRND   37 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~---~V~vlE~~~   37 (328)
                      ..+|.|||+|.-|.+.|..|.++|+   +|++++++.
T Consensus         3 ~~~I~iIG~G~mG~aia~~l~~~g~~~~~V~v~dr~~   39 (280)
T 3tri_A            3 TSNITFIGGGNMARNIVVGLIANGYDPNRICVTNRSL   39 (280)
T ss_dssp             CSCEEEESCSHHHHHHHHHHHHTTCCGGGEEEECSSS
T ss_pred             CCEEEEEcccHHHHHHHHHHHHCCCCCCeEEEEeCCH
Confidence            5789999999999999999999998   999999864

>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}

Probab=93.61  E-value=0.055  Score=45.60  Aligned_cols=32  Identities=19%  Similarity=0.323  Sum_probs=27.5

Q ss_pred             cEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (328)
Q Consensus         6 dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~   37 (328)
                      +|.+||-|..|...|..|.++|++|++++++.
T Consensus         7 kIgfIGLG~MG~~mA~~L~~~G~~V~v~dr~~   38 (297)
T 4gbj_A            7 KIAFLGLGNLGTPIAEILLEAGYELVVWNRTA   38 (297)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEC----
T ss_pred             cEEEEecHHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            69999999999999999999999999999864

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*

Probab=93.59  E-value=0.045  Score=52.07  Aligned_cols=33  Identities=24%  Similarity=0.285  Sum_probs=30.8

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~   37 (328)
                      .+|.|||+|..|...|..|+++|++|+++|++.
T Consensus       315 ~kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~  347 (715)
T 1wdk_A          315 KQAAVLGAGIMGGGIAYQSASKGTPILMKDINE  347 (715)
T ss_dssp             SSEEEECCHHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             CEEEEECCChhhHHHHHHHHhCCCEEEEEECCH
Confidence            479999999999999999999999999999864

>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6

Probab=93.54  E-value=0.062  Score=48.57  Aligned_cols=32  Identities=31%  Similarity=0.407  Sum_probs=30.1

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRN   36 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~   36 (328)
                      ++|.|||+|..|...|..|+++|++|++++++
T Consensus         2 MkIgVIG~G~mG~~lA~~La~~G~~V~v~dr~   33 (478)
T 1pgj_A            2 MDVGVVGLGVMGANLALNIAEKGFKVAVFNRT   33 (478)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             CEEEEEChHHHHHHHHHHHHHCCCEEEEEeCC
Confidence            47999999999999999999999999999885

>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A

Probab=93.53  E-value=0.057  Score=45.59  Aligned_cols=34  Identities=18%  Similarity=0.296  Sum_probs=30.2

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCC--eEEEeccCCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGL--KVLHMDRNDY   38 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~--~V~vlE~~~~   38 (328)
                      .+|+|||+|..|.++|+.|+.+|.  +|.++|.+..
T Consensus        15 ~kV~ViGaG~vG~~~a~~l~~~g~~~ev~L~Di~~~   50 (303)
T 2i6t_A           15 NKITVVGGGELGIACTLAISAKGIADRLVLLDLSEG   50 (303)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECCC--
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCcc
Confidence            689999999999999999999998  9999998763

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=93.51  E-value=0.074  Score=42.20  Aligned_cols=32  Identities=19%  Similarity=0.227  Sum_probs=29.3

Q ss_pred             cEEEECC-ChhHHHHHHhhhhCCCeEEEeccCC
Q 020312            6 DVIVLGT-GLKECILSGLLSVDGLKVLHMDRND   37 (328)
Q Consensus         6 dvvIvG~-G~aGl~aA~~L~~~G~~V~vlE~~~   37 (328)
                      +|+|.|| |..|...+.+|.++|++|+++.|+.
T Consensus         2 kvlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~   34 (221)
T 3ew7_A            2 KIGIIGATGRAGSRILEEAKNRGHEVTAIVRNA   34 (221)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCS
T ss_pred             eEEEEcCCchhHHHHHHHHHhCCCEEEEEEcCc
Confidence            6999996 9999999999999999999998863

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A*

Probab=93.51  E-value=0.059  Score=51.27  Aligned_cols=33  Identities=21%  Similarity=0.220  Sum_probs=30.9

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~   37 (328)
                      .+|.|||+|..|...|+.++++|++|+++|.+.
T Consensus       317 ~~v~ViGaG~MG~gIA~~~a~aG~~V~l~D~~~  349 (742)
T 3zwc_A          317 SSVGVLGLGTMGRGIAISFARVGISVVAVESDP  349 (742)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEECSSH
T ss_pred             cEEEEEcccHHHHHHHHHHHhCCCchhcccchH
Confidence            479999999999999999999999999999864

>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}

Probab=93.50  E-value=0.078  Score=45.53  Aligned_cols=34  Identities=26%  Similarity=0.263  Sum_probs=31.3

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~   37 (328)
                      ..+|.|||.|..|.+.|..|+++|++|++++++.
T Consensus         8 ~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~   41 (341)
T 3ktd_A            8 SRPVCILGLGLIGGSLLRDLHAANHSVFGYNRSR   41 (341)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHHTTCCEEEECSCH
T ss_pred             CCEEEEEeecHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            3589999999999999999999999999999864

>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*

Probab=93.46  E-value=0.074  Score=46.13  Aligned_cols=33  Identities=24%  Similarity=0.339  Sum_probs=30.3

Q ss_pred             cEEEECCChhHHHHHHhhhhCCCeEEEeccCCC
Q 020312            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (328)
Q Consensus         6 dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~   38 (328)
                      .|+|||||..|..+|+.+.+.|++|++++.+..
T Consensus         3 ~I~ilGgg~~g~~~~~~Ak~~G~~vv~vd~~~~   35 (363)
T 4ffl_A            3 TICLVGGKLQGFEAAYLSKKAGMKVVLVDKNPQ   35 (363)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESCTT
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence            699999999999999999999999999998653

>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}

Probab=93.42  E-value=0.083  Score=43.09  Aligned_cols=33  Identities=15%  Similarity=0.232  Sum_probs=30.5

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCC----eEEEeccCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGL----KVLHMDRND   37 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~----~V~vlE~~~   37 (328)
                      ++|.|||+|..|.+.|..|.++|+    +|.+++++.
T Consensus         3 ~~i~iIG~G~mG~~~a~~l~~~g~~~~~~V~~~~r~~   39 (247)
T 3gt0_A            3 KQIGFIGCGNMGMAMIGGMINKNIVSSNQIICSDLNT   39 (247)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTSSCGGGEEEECSCH
T ss_pred             CeEEEECccHHHHHHHHHHHhCCCCCCCeEEEEeCCH
Confidence            479999999999999999999998    999999863

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...

Probab=93.42  E-value=0.083  Score=45.11  Aligned_cols=33  Identities=15%  Similarity=0.180  Sum_probs=30.2

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCC--eEEEeccC
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGL--KVLHMDRN   36 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~--~V~vlE~~   36 (328)
                      ..+|+|||+|..|.++|+.|+.+|.  ++.++|.+
T Consensus        19 ~~kV~ViGaG~vG~~~a~~l~~~~~~~el~L~Di~   53 (331)
T 4aj2_A           19 QNKITVVGVGAVGMACAISILMKDLADELALVDVI   53 (331)
T ss_dssp             SSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCceEEEEeCC
Confidence            4689999999999999999999997  89999974

>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}

Probab=93.40  E-value=0.086  Score=44.19  Aligned_cols=35  Identities=29%  Similarity=0.322  Sum_probs=31.3

Q ss_pred             ccEEEECC-ChhHHHHHHhhhhCCCeEEEeccCCCC
Q 020312            5 YDVIVLGT-GLKECILSGLLSVDGLKVLHMDRNDYY   39 (328)
Q Consensus         5 ~dvvIvG~-G~aGl~aA~~L~~~G~~V~vlE~~~~~   39 (328)
                      |+|+|.|| |..|-..+.+|.++|++|+++-|++..
T Consensus         1 MkILVTGatGfIG~~L~~~L~~~G~~V~~l~R~~~~   36 (298)
T 4b4o_A            1 MRVLVGGGTGFIGTALTQLLNARGHEVTLVSRKPGP   36 (298)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCT
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCc
Confidence            46999998 999999999999999999999876543

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*

Probab=93.40  E-value=0.07  Score=45.36  Aligned_cols=33  Identities=24%  Similarity=0.398  Sum_probs=29.7

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCC--eEEEeccC
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGL--KVLHMDRN   36 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~--~V~vlE~~   36 (328)
                      ..+|+|||+|..|.+.|+.|++.|.  +|.++|.+
T Consensus         6 ~~kI~IIGaG~vG~sla~~l~~~~~~~ev~l~Di~   40 (316)
T 1ldn_A            6 GARVVVIGAGFVGASYVFALMNQGIADEIVLIDAN   40 (316)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence            3689999999999999999998885  89999985

>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*

Probab=93.38  E-value=0.072  Score=44.47  Aligned_cols=31  Identities=23%  Similarity=0.296  Sum_probs=28.9

Q ss_pred             cEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (328)
Q Consensus         6 dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~   37 (328)
                      +|.|||+|..|...|..|++ |++|++++++.
T Consensus         3 ~i~iiG~G~~G~~~a~~l~~-g~~V~~~~~~~   33 (289)
T 2cvz_A            3 KVAFIGLGAMGYPMAGHLAR-RFPTLVWNRTF   33 (289)
T ss_dssp             CEEEECCSTTHHHHHHHHHT-TSCEEEECSST
T ss_pred             eEEEEcccHHHHHHHHHHhC-CCeEEEEeCCH
Confidence            69999999999999999999 99999998864

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=93.38  E-value=0.062  Score=53.45  Aligned_cols=33  Identities=27%  Similarity=0.275  Sum_probs=30.7

Q ss_pred             cEEEECCChhHHHHHHhhhhCCC-eEEEeccCCC
Q 020312            6 DVIVLGTGLKECILSGLLSVDGL-KVLHMDRNDY   38 (328)
Q Consensus         6 dvvIvG~G~aGl~aA~~L~~~G~-~V~vlE~~~~   38 (328)
                      +|+|||||.+|+=+|..|++.|. +|+|++++++
T Consensus       334 ~VvVIGgG~~g~e~A~~~~~~G~~~Vtvv~r~~~  367 (1025)
T 1gte_A          334 AVIVLGAGDTAFDCATSALRCGARRVFLVFRKGF  367 (1025)
T ss_dssp             EEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCG
T ss_pred             cEEEECCChHHHHHHHHHHHcCCCEEEEEEecCh
Confidence            89999999999999999999995 8999999863

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=93.37  E-value=0.076  Score=46.26  Aligned_cols=34  Identities=24%  Similarity=0.246  Sum_probs=30.8

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~   37 (328)
                      ...|+|+|+|..|+.+|..|+..|.+|++++++.
T Consensus       166 ~~~V~ViGaG~iG~~~a~~l~~~Ga~V~~~d~~~  199 (369)
T 2eez_A          166 PASVVILGGGTVGTNAAKIALGMGAQVTILDVNH  199 (369)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            3579999999999999999999999999999753

>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A

Probab=93.36  E-value=0.063  Score=48.79  Aligned_cols=33  Identities=15%  Similarity=0.217  Sum_probs=30.0

Q ss_pred             ccEEEECCChhHHH-HHHhhhhCCCeEEEeccCC
Q 020312            5 YDVIVLGTGLKECI-LSGLLSVDGLKVLHMDRND   37 (328)
Q Consensus         5 ~dvvIvG~G~aGl~-aA~~L~~~G~~V~vlE~~~   37 (328)
                      .+|.|||.|-+|++ +|..|.++|++|++.|.+.
T Consensus        23 ~~v~viGiG~sG~s~~A~~l~~~G~~V~~~D~~~   56 (494)
T 4hv4_A           23 RHIHFVGIGGAGMGGIAEVLANEGYQISGSDLAP   56 (494)
T ss_dssp             CEEEEETTTSTTHHHHHHHHHHTTCEEEEECSSC
T ss_pred             CEEEEEEEcHhhHHHHHHHHHhCCCeEEEEECCC
Confidence            57999999999997 6999999999999999764

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=93.32  E-value=0.065  Score=44.24  Aligned_cols=34  Identities=21%  Similarity=0.384  Sum_probs=30.5

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCe-EEEeccCC
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLK-VLHMDRND   37 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~-V~vlE~~~   37 (328)
                      .++|.|||+|..|...|..|++.|++ |.+++++.
T Consensus        10 ~m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~~~~   44 (266)
T 3d1l_A           10 DTPIVLIGAGNLATNLAKALYRKGFRIVQVYSRTE   44 (266)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSH
T ss_pred             CCeEEEEcCCHHHHHHHHHHHHCCCeEEEEEeCCH
Confidence            36899999999999999999999999 89998753

>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A

Probab=93.31  E-value=0.083  Score=43.38  Aligned_cols=33  Identities=9%  Similarity=0.077  Sum_probs=30.4

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~   37 (328)
                      ++|.|||.|..|...|..|.+.|++|.+++++.
T Consensus         4 m~i~iiG~G~mG~~~a~~l~~~g~~v~~~~~~~   36 (259)
T 2ahr_A            4 MKIGIIGVGKMASAIIKGLKQTPHELIISGSSL   36 (259)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTSSCEEEEECSSH
T ss_pred             cEEEEECCCHHHHHHHHHHHhCCCeEEEECCCH
Confidence            589999999999999999999999999998863

>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*

Probab=93.31  E-value=0.084  Score=44.66  Aligned_cols=33  Identities=30%  Similarity=0.384  Sum_probs=29.1

Q ss_pred             cccEEEECCC-hhHHHHHHhhhhCCCeEEEeccC
Q 020312            4 EYDVIVLGTG-LKECILSGLLSVDGLKVLHMDRN   36 (328)
Q Consensus         4 ~~dvvIvG~G-~aGl~aA~~L~~~G~~V~vlE~~   36 (328)
                      ..+++|||+| +.|..+|.+|...|..|+|++++
T Consensus       177 gk~vvVIG~G~iVG~~~A~~L~~~gAtVtv~nR~  210 (320)
T 1edz_A          177 GKKCIVINRSEIVGRPLAALLANDGATVYSVDVN  210 (320)
T ss_dssp             TCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSS
T ss_pred             CCEEEEECCCcchHHHHHHHHHHCCCEEEEEeCc
Confidence            3589999999 67999999999999999988663

>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis}

Probab=93.26  E-value=0.087  Score=45.24  Aligned_cols=33  Identities=12%  Similarity=0.154  Sum_probs=29.6

Q ss_pred             cccEEEECC-ChhHHHHHHhhhhCC--CeEEEeccC
Q 020312            4 EYDVIVLGT-GLKECILSGLLSVDG--LKVLHMDRN   36 (328)
Q Consensus         4 ~~dvvIvG~-G~aGl~aA~~L~~~G--~~V~vlE~~   36 (328)
                      ..+|+|||+ |-.|.++|+.|+..|  .+|+++|..
T Consensus         8 ~~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~   43 (343)
T 3fi9_A            8 EEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPF   43 (343)
T ss_dssp             SSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSC
T ss_pred             CCEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCC
Confidence            468999997 999999999999998  489999974

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=93.25  E-value=0.083  Score=42.08  Aligned_cols=31  Identities=26%  Similarity=0.365  Sum_probs=29.0

Q ss_pred             cEEEECC-ChhHHHHHHhhhhCCCeEEEeccC
Q 020312            6 DVIVLGT-GLKECILSGLLSVDGLKVLHMDRN   36 (328)
Q Consensus         6 dvvIvG~-G~aGl~aA~~L~~~G~~V~vlE~~   36 (328)
                      +|+|.|| |-.|...|..|.++|++|+++.++
T Consensus         2 kilVtGatG~iG~~l~~~L~~~g~~V~~~~R~   33 (224)
T 3h2s_A            2 KIAVLGATGRAGSAIVAEARRRGHEVLAVVRD   33 (224)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             EEEEEcCCCHHHHHHHHHHHHCCCEEEEEEec
Confidence            5999998 999999999999999999999875

>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...

Probab=93.25  E-value=0.26  Score=42.98  Aligned_cols=57  Identities=16%  Similarity=0.232  Sum_probs=42.4

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEE--ecCc--eEEcCEEEECCCCCc
Q 020312          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVT--SEGE--TAKCKKVVCDPSYLP  289 (328)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~--~~g~--~~~ad~vV~~~~~~~  289 (328)
                      ..+.+.|.+.+.+.|++++++++|++|..++++.+ .|+  .+|+  +++||.||.+-+..+
T Consensus       103 ~~l~~~L~~~~~~~g~~i~~~~~v~~i~~~~~~~~-~v~~~~~g~~~~~~a~~vV~AdG~~S  163 (394)
T 1k0i_A          103 TEVTRDLMEAREACGATTVYQAAEVRLHDLQGERP-YVTFERDGERLRLDCDYIAGCDGFHG  163 (394)
T ss_dssp             HHHHHHHHHHHHHTTCEEESSCEEEEEECTTSSSC-EEEEEETTEEEEEECSEEEECCCTTC
T ss_pred             HHHHHHHHHHHHhcCCeEEeceeEEEEEEecCCce-EEEEecCCcEEEEEeCEEEECCCCCc
Confidence            34677788888888999999999999998622333 333  3666  699999998766543

>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae}

Probab=93.24  E-value=0.08  Score=48.05  Aligned_cols=34  Identities=18%  Similarity=0.131  Sum_probs=31.4

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~   37 (328)
                      ..+|.|||.|..|...|..|+++|++|++++++.
T Consensus        10 ~~~IgvIGlG~MG~~lA~~La~~G~~V~v~dr~~   43 (497)
T 2p4q_A           10 SADFGLIGLAVMGQNLILNAADHGFTVCAYNRTQ   43 (497)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CCCEEEEeeHHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            3689999999999999999999999999999864

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=93.23  E-value=0.06  Score=44.73  Aligned_cols=33  Identities=18%  Similarity=0.159  Sum_probs=30.1

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEeccC
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRN   36 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~   36 (328)
                      ...++|+|+|-+|.++|..|++.|.+|+|+.|+
T Consensus       119 ~~~vlvlGaGg~g~a~a~~L~~~G~~v~v~~R~  151 (272)
T 1p77_A          119 NQHVLILGAGGATKGVLLPLLQAQQNIVLANRT  151 (272)
T ss_dssp             TCEEEEECCSHHHHTTHHHHHHTTCEEEEEESS
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCEEEEEECC
Confidence            357999999999999999999999999999874

>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A*

Probab=93.23  E-value=0.075  Score=45.29  Aligned_cols=33  Identities=18%  Similarity=0.267  Sum_probs=30.1

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCC--eEEEeccC
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGL--KVLHMDRN   36 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~--~V~vlE~~   36 (328)
                      ..+|+|||+|..|.++|+.|++.|.  ++.++|.+
T Consensus         9 ~~kV~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~   43 (326)
T 3vku_A            9 HQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIF   43 (326)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCC
Confidence            4689999999999999999999987  89999974

>2qrj_A Saccharopine dehydrogenase, NAD+, L-lysine- forming; sulfate, rossmann fold, alpha-aminoadipate pathway, fungal lysine biosynthesis; 1.60A {Saccharomyces cerevisiae} PDB: 2qrk_A* 2qrl_A* 2q99_A 3ugk_A 3uh1_A* 3uha_A*

Probab=93.19  E-value=0.062  Score=46.81  Aligned_cols=39  Identities=26%  Similarity=0.393  Sum_probs=34.1

Q ss_pred             cccEEEECC-ChhHHHHHHhhhhCCC---eEEEeccCC-CCCCc
Q 020312            4 EYDVIVLGT-GLKECILSGLLSVDGL---KVLHMDRND-YYGGE   42 (328)
Q Consensus         4 ~~dvvIvG~-G~aGl~aA~~L~~~G~---~V~vlE~~~-~~GG~   42 (328)
                      ..+|+|||| |.+|+.|+..+...|.   +|+++|.+. .-||.
T Consensus       214 ~~kV~ViG~~G~vG~~A~~~a~~lGa~~~~V~v~D~~~~~~g~~  257 (394)
T 2qrj_A          214 KPTVLIIGALGRCGSGAIDLLHKVGIPDANILKWDIKETSRGGP  257 (394)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHHTTCCGGGEEEECHHHHTTCSC
T ss_pred             CCeEEEEcCCCHHHHHHHHHHHhCCCCcCceEEeeccccccCCc
Confidence            468999999 9999999999999997   999999975 44664

>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6

Probab=93.14  E-value=0.075  Score=43.79  Aligned_cols=30  Identities=23%  Similarity=0.227  Sum_probs=28.2

Q ss_pred             cEEEECCChhHHHHHHhhhhCCCeEEEecc
Q 020312            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDR   35 (328)
Q Consensus         6 dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~   35 (328)
                      +|.|||+|..|...|..|++.|++|+++++
T Consensus         2 ~I~iIG~G~mG~~la~~l~~~g~~V~~~~~   31 (264)
T 1i36_A            2 RVGFIGFGEVAQTLASRLRSRGVEVVTSLE   31 (264)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCEEEECCT
T ss_pred             eEEEEechHHHHHHHHHHHHCCCeEEEeCC
Confidence            689999999999999999999999999866

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=93.13  E-value=0.087  Score=50.02  Aligned_cols=38  Identities=16%  Similarity=0.124  Sum_probs=34.1

Q ss_pred             ccEEEEC--CChhHHHHHHhhhhCCCeEEEeccCCCCCCc
Q 020312            5 YDVIVLG--TGLKECILSGLLSVDGLKVLHMDRNDYYGGE   42 (328)
Q Consensus         5 ~dvvIvG--~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~   42 (328)
                      .+|+|||  +|.+|+-+|..|++.|.+|+++++.+.+...
T Consensus       524 ~~VvViG~ggG~~g~e~A~~L~~~g~~Vtlv~~~~~l~~~  563 (690)
T 3k30_A          524 KKVVVYDDDHYYLGGVVAELLAQKGYEVSIVTPGAQVSSW  563 (690)
T ss_dssp             SEEEEEECSCSSHHHHHHHHHHHTTCEEEEEESSSSTTGG
T ss_pred             CEEEEEcCCCCccHHHHHHHHHhCCCeeEEEecccccccc
Confidence            4699999  9999999999999999999999998876553

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=93.09  E-value=0.089  Score=43.79  Aligned_cols=32  Identities=25%  Similarity=0.453  Sum_probs=29.5

Q ss_pred             cEEEECCChhHHHHHHhhhhCCC--eEEEeccCC
Q 020312            6 DVIVLGTGLKECILSGLLSVDGL--KVLHMDRND   37 (328)
Q Consensus         6 dvvIvG~G~aGl~aA~~L~~~G~--~V~vlE~~~   37 (328)
                      +|.|||+|..|.+.|..|++.|+  +|++++++.
T Consensus         3 ~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~   36 (281)
T 2g5c_A            3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINP   36 (281)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred             EEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCCH
Confidence            69999999999999999999998  999998853

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=93.05  E-value=0.1  Score=43.98  Aligned_cols=33  Identities=15%  Similarity=0.118  Sum_probs=29.9

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCC-eEEEeccC
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGL-KVLHMDRN   36 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~-~V~vlE~~   36 (328)
                      ...++|||+|-+|..+|..|++.|. +|+|+.++
T Consensus       141 ~~~vlVlGaGg~g~aia~~L~~~G~~~V~v~nR~  174 (297)
T 2egg_A          141 GKRILVIGAGGGARGIYFSLLSTAAERIDMANRT  174 (297)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTTCSEEEEECSS
T ss_pred             CCEEEEECcHHHHHHHHHHHHHCCCCEEEEEeCC
Confidence            3579999999999999999999997 99999874

>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A*

Probab=93.01  E-value=0.091  Score=44.62  Aligned_cols=33  Identities=30%  Similarity=0.182  Sum_probs=29.9

Q ss_pred             ccEEEECC-ChhHHHHHHhhhhCC--CeEEEeccCC
Q 020312            5 YDVIVLGT-GLKECILSGLLSVDG--LKVLHMDRND   37 (328)
Q Consensus         5 ~dvvIvG~-G~aGl~aA~~L~~~G--~~V~vlE~~~   37 (328)
                      ++|+|||+ |-.|.+.|..|++.|  .+|.++|...
T Consensus         1 mKI~IiGa~G~VG~~la~~L~~~~~~~ev~L~Di~~   36 (314)
T 1mld_A            1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAH   36 (314)
T ss_dssp             CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSS
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCcEEEEEeCCc
Confidence            37999998 999999999999998  7899998865

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=92.99  E-value=0.15  Score=46.12  Aligned_cols=43  Identities=26%  Similarity=0.370  Sum_probs=36.7

Q ss_pred             CcccEEEECCChhHHHHHHhhhhCCCeEEEeccC-------C--CCCCcccc
Q 020312            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRN-------D--YYGGESSS   45 (328)
Q Consensus         3 ~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~-------~--~~GG~~~s   45 (328)
                      .++||+|||||++|++||.+|+++|++|+|+|+.       +  .+||.|..
T Consensus         8 ~~~DvvVIGgG~aGl~aA~~la~~G~~V~liEk~~~~~~~~~~~~~GG~c~~   59 (483)
T 3dgh_A            8 YDYDLIVIGGGSAGLACAKEAVLNGARVACLDFVKPTPTLGTKWGVGGTCVN   59 (483)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTTTCCCCSSCHHHH
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCEEEEEEeccccccccccCCcCCeecc
Confidence            4699999999999999999999999999999942       1  37887643

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*

Probab=92.97  E-value=0.11  Score=45.89  Aligned_cols=37  Identities=16%  Similarity=0.133  Sum_probs=34.1

Q ss_pred             cEEEECCChhHHHHHHhhhh---CCCeEEEeccCCCCCCc
Q 020312            6 DVIVLGTGLKECILSGLLSV---DGLKVLHMDRNDYYGGE   42 (328)
Q Consensus         6 dvvIvG~G~aGl~aA~~L~~---~G~~V~vlE~~~~~GG~   42 (328)
                      ||+|||||++||++|.+|++   .|++|+|+|+++..+..
T Consensus         3 ~VvIIGgG~aGl~aA~~L~~~~~~g~~V~vie~~~~~~~~   42 (409)
T 3h8l_A            3 KVLVLGGRFGALTAAYTLKRLVGSKADVKVINKSRFSYFR   42 (409)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHHGGGSEEEEEESSSEEEEC
T ss_pred             eEEEECCCHHHHHHHHHHHhhCCCCCeEEEEeCCCCceec
Confidence            89999999999999999999   89999999999876544

>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=92.90  E-value=0.12  Score=44.08  Aligned_cols=38  Identities=21%  Similarity=0.179  Sum_probs=32.9

Q ss_pred             CCCcccEEEECC-ChhHHHHHHhhhhCCCeEEEeccCCC
Q 020312            1 MDEEYDVIVLGT-GLKECILSGLLSVDGLKVLHMDRNDY   38 (328)
Q Consensus         1 ~~~~~dvvIvG~-G~aGl~aA~~L~~~G~~V~vlE~~~~   38 (328)
                      |+....|+|.|| |-.|...|..|+++|++|+++.++..
T Consensus         2 M~~~~~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~   40 (341)
T 3enk_A            2 MSTKGTILVTGGAGYIGSHTAVELLAHGYDVVIADNLVN   40 (341)
T ss_dssp             CCSSCEEEEETTTSHHHHHHHHHHHHTTCEEEEECCCSS
T ss_pred             CCCCcEEEEecCCcHHHHHHHHHHHHCCCcEEEEecCCc
Confidence            555678999996 89999999999999999999987643

>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium}

Probab=92.86  E-value=0.068  Score=44.82  Aligned_cols=32  Identities=13%  Similarity=0.112  Sum_probs=29.5

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~   37 (328)
                      ++|.|||+|..|...|..|++.|++|++++ +.
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~-~~   35 (295)
T 1yb4_A            4 MKLGFIGLGIMGSPMAINLARAGHQLHVTT-IG   35 (295)
T ss_dssp             CEEEECCCSTTHHHHHHHHHHTTCEEEECC-SS
T ss_pred             CEEEEEccCHHHHHHHHHHHhCCCEEEEEc-CH
Confidence            479999999999999999999999999998 53

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=92.86  E-value=0.089  Score=47.26  Aligned_cols=35  Identities=23%  Similarity=0.333  Sum_probs=30.3

Q ss_pred             ccEEEECCChhHHHHHHhhhhC--------------------C-CeEEEeccCCCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVD--------------------G-LKVLHMDRNDYY   39 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~--------------------G-~~V~vlE~~~~~   39 (328)
                      -.|+|||+|.+|+-+|..|++.                    | .+|+|+++++..
T Consensus       148 ~~vvVIG~G~~g~e~A~~L~~~~~~l~~tdi~~~~~~~l~~~g~~~V~lv~r~~~~  203 (456)
T 1lqt_A          148 ARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRGPL  203 (456)
T ss_dssp             SEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSCGG
T ss_pred             CEEEEECCCHHHHHHHHHHHhhhhhhcCCCccHHHHHHHHHCCCcEEEEEecCChh
Confidence            4799999999999999999974                    5 599999997654

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=92.84  E-value=0.1  Score=42.10  Aligned_cols=34  Identities=29%  Similarity=0.362  Sum_probs=30.8

Q ss_pred             cccEEEECC-ChhHHHHHHhhhhCCCeEEEeccCC
Q 020312            4 EYDVIVLGT-GLKECILSGLLSVDGLKVLHMDRND   37 (328)
Q Consensus         4 ~~dvvIvG~-G~aGl~aA~~L~~~G~~V~vlE~~~   37 (328)
                      .+.|+|.|| |-.|...|.+|.++|++|+++.++.
T Consensus        21 ~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~   55 (236)
T 3e8x_A           21 GMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNE   55 (236)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             CCeEEEECCCChHHHHHHHHHHhCCCeEEEEECCh
Confidence            468999998 9999999999999999999998853

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*

Probab=92.83  E-value=0.31  Score=42.34  Aligned_cols=53  Identities=17%  Similarity=0.162  Sum_probs=42.6

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe-cCceEEcCEEEECCCCCc
Q 020312          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLP  289 (328)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~-~g~~~~ad~vV~~~~~~~  289 (328)
                      ..+.+.|.+.+++.|++++++++|++|+.+  +   .|++ +|++++||.||.+.+..+
T Consensus       107 ~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~--~---~v~~~~g~~~~ad~vV~AdG~~s  160 (379)
T 3alj_A          107 SHLHDALVNRARALGVDISVNSEAVAADPV--G---RLTLQTGEVLEADLIVGADGVGS  160 (379)
T ss_dssp             HHHHHHHHHHHHHTTCEEESSCCEEEEETT--T---EEEETTSCEEECSEEEECCCTTC
T ss_pred             HHHHHHHHHHHHhcCCEEEeCCEEEEEEeC--C---EEEECCCCEEEcCEEEECCCccH
Confidence            457778888888889999999999999863  3   3455 777899999998877654

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=92.66  E-value=0.09  Score=43.70  Aligned_cols=33  Identities=30%  Similarity=0.393  Sum_probs=30.2

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEeccC
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRN   36 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~   36 (328)
                      ..+++|||+|..|.+.|..|.+.|.+|++++++
T Consensus       129 ~~~v~iiGaG~~g~aia~~L~~~g~~V~v~~r~  161 (275)
T 2hk9_A          129 EKSILVLGAGGASRAVIYALVKEGAKVFLWNRT  161 (275)
T ss_dssp             GSEEEEECCSHHHHHHHHHHHHHTCEEEEECSS
T ss_pred             CCEEEEECchHHHHHHHHHHHHcCCEEEEEECC
Confidence            357999999999999999999999999999875

>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5

Probab=92.60  E-value=0.12  Score=43.33  Aligned_cols=31  Identities=16%  Similarity=0.324  Sum_probs=28.4

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRN   36 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~   36 (328)
                      ..++|+|+|-.|.++|..|++.| +|+|..++
T Consensus       129 k~vlV~GaGgiG~aia~~L~~~G-~V~v~~r~  159 (287)
T 1nvt_A          129 KNIVIYGAGGAARAVAFELAKDN-NIIIANRT  159 (287)
T ss_dssp             CEEEEECCSHHHHHHHHHHTSSS-EEEEECSS
T ss_pred             CEEEEECchHHHHHHHHHHHHCC-CEEEEECC
Confidence            56999999999999999999999 99999774

>1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A

Probab=92.57  E-value=0.085  Score=45.13  Aligned_cols=36  Identities=17%  Similarity=0.107  Sum_probs=30.2

Q ss_pred             CCC-cccEEEECC-ChhHHHHHHhhhhCCC-------eEEEeccC
Q 020312            1 MDE-EYDVIVLGT-GLKECILSGLLSVDGL-------KVLHMDRN   36 (328)
Q Consensus         1 ~~~-~~dvvIvG~-G~aGl~aA~~L~~~G~-------~V~vlE~~   36 (328)
                      |++ .++|+|+|| |-.|.+.|..|++.|.       +|.+++..
T Consensus         1 m~~~~~KI~ViGaaG~VG~~l~~~L~~~~~~~~~~~~ev~l~Di~   45 (329)
T 1b8p_A            1 MAKTPMRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLLEIP   45 (329)
T ss_dssp             --CCCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCS
T ss_pred             CCCCCCEEEEECCCChHHHHHHHHHHhCCCcCCCCCCEEEEEcCC
Confidence            544 579999998 9999999999999885       89999875

>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2

Probab=92.55  E-value=0.12  Score=43.46  Aligned_cols=37  Identities=19%  Similarity=0.212  Sum_probs=31.8

Q ss_pred             CCCcccEEEECC-ChhHHHHHHhhhhCCCeEEEeccCC
Q 020312            1 MDEEYDVIVLGT-GLKECILSGLLSVDGLKVLHMDRND   37 (328)
Q Consensus         1 ~~~~~dvvIvG~-G~aGl~aA~~L~~~G~~V~vlE~~~   37 (328)
                      |+....|+|+|| |-.|...+..|.++|++|.++.|+.
T Consensus         1 M~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~   38 (313)
T 1qyd_A            1 MDKKSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPE   38 (313)
T ss_dssp             -CCCCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSC
T ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHhCCCcEEEEECCC
Confidence            554568999997 9999999999999999999998864

>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2

Probab=92.52  E-value=0.13  Score=43.18  Aligned_cols=37  Identities=14%  Similarity=0.178  Sum_probs=31.7

Q ss_pred             CCCcccEEEECC-ChhHHHHHHhhhhCCCeEEEeccCC
Q 020312            1 MDEEYDVIVLGT-GLKECILSGLLSVDGLKVLHMDRND   37 (328)
Q Consensus         1 ~~~~~dvvIvG~-G~aGl~aA~~L~~~G~~V~vlE~~~   37 (328)
                      |.....|+|+|| |-.|...+..|.++|++|.++.|+.
T Consensus         1 M~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~   38 (308)
T 1qyc_A            1 MGSRSRILLIGATGYIGRHVAKASLDLGHPTFLLVRES   38 (308)
T ss_dssp             -CCCCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCC
T ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHhCCCCEEEEECCc
Confidence            544567999998 9999999999999999999998864

>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis}

Probab=92.44  E-value=0.12  Score=43.58  Aligned_cols=35  Identities=20%  Similarity=0.266  Sum_probs=31.7

Q ss_pred             cccEEEECC-ChhHHHHHHhhhhCCCeEEEeccCCC
Q 020312            4 EYDVIVLGT-GLKECILSGLLSVDGLKVLHMDRNDY   38 (328)
Q Consensus         4 ~~dvvIvG~-G~aGl~aA~~L~~~G~~V~vlE~~~~   38 (328)
                      ...|+|.|| |..|...+.+|.++|++|+++.++..
T Consensus         7 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~   42 (321)
T 3vps_A            7 KHRILITGGAGFIGGHLARALVASGEEVTVLDDLRV   42 (321)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCCEEEECCCSS
T ss_pred             CCeEEEECCCChHHHHHHHHHHHCCCEEEEEecCCc
Confidence            468999999 99999999999999999999988654

>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*

Probab=92.39  E-value=0.11  Score=44.25  Aligned_cols=33  Identities=18%  Similarity=0.267  Sum_probs=29.9

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCC--eEEEeccC
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGL--KVLHMDRN   36 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~--~V~vlE~~   36 (328)
                      +.+|+|||+|-.|.+.|+.|+..+.  ++.++|.+
T Consensus         9 ~~KI~IiGaG~vG~~la~~l~~~~~~~el~L~Di~   43 (326)
T 2zqz_A            9 HQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIF   43 (326)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCC
Confidence            4799999999999999999998885  89999974

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=92.38  E-value=0.13  Score=44.98  Aligned_cols=34  Identities=26%  Similarity=0.281  Sum_probs=30.7

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~   37 (328)
                      ...|+|+|+|..|+.+|..|+..|.+|++++++.
T Consensus       168 g~~V~ViG~G~iG~~~a~~a~~~Ga~V~~~d~~~  201 (377)
T 2vhw_A          168 PADVVVIGAGTAGYNAARIANGMGATVTVLDINI  201 (377)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            3579999999999999999999999999999753

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=92.35  E-value=0.14  Score=45.83  Aligned_cols=34  Identities=18%  Similarity=0.118  Sum_probs=30.7

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~   37 (328)
                      ...++|+|+|..|..+|..|+..|.+|++.|.+.
T Consensus       265 GKtVvVtGaGgIG~aiA~~Laa~GA~Viv~D~~~  298 (488)
T 3ond_A          265 GKVAVVAGYGDVGKGCAAALKQAGARVIVTEIDP  298 (488)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            4578999999999999999999999999998753

>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6

Probab=92.34  E-value=0.13  Score=44.17  Aligned_cols=33  Identities=21%  Similarity=0.182  Sum_probs=30.5

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~   37 (328)
                      ..|.|||.|..|.+.|..|++.|++|++.+++.
T Consensus        17 ~~I~IIG~G~mG~alA~~L~~~G~~V~~~~~~~   49 (338)
T 1np3_A           17 KKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSG   49 (338)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEECCTT
T ss_pred             CEEEEECchHHHHHHHHHHHHCcCEEEEEECCh
Confidence            579999999999999999999999999998864

>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}

Probab=92.34  E-value=0.14  Score=41.99  Aligned_cols=31  Identities=23%  Similarity=0.297  Sum_probs=29.1

Q ss_pred             cEEEECCChhHHHHHHhhhhCCC-eEEEeccC
Q 020312            6 DVIVLGTGLKECILSGLLSVDGL-KVLHMDRN   36 (328)
Q Consensus         6 dvvIvG~G~aGl~aA~~L~~~G~-~V~vlE~~   36 (328)
                      .++|||+|-+|-++|+.|.+.|. +|+|+.|+
T Consensus       110 ~vliiGaGg~a~ai~~~L~~~G~~~I~v~nR~  141 (253)
T 3u62_A          110 PVVVVGAGGAARAVIYALLQMGVKDIWVVNRT  141 (253)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCCEEEEESC
T ss_pred             eEEEECcHHHHHHHHHHHHHcCCCEEEEEeCC
Confidence            79999999999999999999997 89999885

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=92.32  E-value=0.11  Score=43.18  Aligned_cols=34  Identities=15%  Similarity=0.076  Sum_probs=30.4

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCC-eEEEeccCC
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGL-KVLHMDRND   37 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~-~V~vlE~~~   37 (328)
                      ...++|+|+|-+|-++|..|++.|. +|+|+.|+.
T Consensus       117 ~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~  151 (277)
T 3don_A          117 DAYILILGAGGASKGIANELYKIVRPTLTVANRTM  151 (277)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHTTCCSCCEEECSCG
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCH
Confidence            3579999999999999999999997 899998754

>2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A*

Probab=92.20  E-value=0.11  Score=43.48  Aligned_cols=33  Identities=9%  Similarity=0.004  Sum_probs=29.0

Q ss_pred             ccEEEECCChhHHHHHHhhhhCC--CeEEEeccCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDG--LKVLHMDRND   37 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G--~~V~vlE~~~   37 (328)
                      ++|+|||+|-.|.++|+.|+.+|  -++.++|...
T Consensus         1 MKV~IiGaG~VG~~~a~~l~~~~~~~el~L~Di~~   35 (294)
T 2x0j_A            1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAE   35 (294)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSH
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCC
Confidence            47999999999999999999887  4799999753

>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=92.18  E-value=0.14  Score=46.37  Aligned_cols=50  Identities=18%  Similarity=0.149  Sum_probs=40.8

Q ss_pred             HHHHHcCcEEEcCcceeEEEecCCCcEEEEEe-cCceEEcCEEEECCCCCcch
Q 020312          240 RLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLPNK  291 (328)
Q Consensus       240 ~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~-~g~~~~ad~vV~~~~~~~~~  291 (328)
                      +.++++|+++++++.|++|..+  +++..+++ +++++.||.||++++..|+.
T Consensus       265 ~~l~~~GV~v~~~~~v~~i~~~--~~v~~v~~~~g~~i~aD~Vv~a~G~~p~~  315 (493)
T 1y56_A          265 QELERWGIDYVHIPNVKRVEGN--EKVERVIDMNNHEYKVDALIFADGRRPDI  315 (493)
T ss_dssp             HHHHHHTCEEEECSSEEEEECS--SSCCEEEETTCCEEECSEEEECCCEEECC
T ss_pred             HHHHhCCcEEEeCCeeEEEecC--CceEEEEeCCCeEEEeCEEEECCCcCcCc
Confidence            5677889999999999999865  34555666 77899999999999987763

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=92.17  E-value=0.1  Score=48.04  Aligned_cols=33  Identities=21%  Similarity=0.266  Sum_probs=30.8

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~   37 (328)
                      ..|+|||+|.+|+-+|..|++.|.+|+++++.+
T Consensus       187 k~V~VIG~G~sg~e~a~~l~~~~~~vtv~~r~~  219 (542)
T 1w4x_A          187 QRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTP  219 (542)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHBSEEEEEESSC
T ss_pred             CEEEEECCCccHHHHHHHHhhcCceEEEEEcCC
Confidence            579999999999999999999999999999865

>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A*

Probab=92.15  E-value=0.15  Score=44.86  Aligned_cols=34  Identities=26%  Similarity=0.174  Sum_probs=31.6

Q ss_pred             CCCcccEEEECCChhHHHHHHhhhhCCCeEEEec
Q 020312            1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMD   34 (328)
Q Consensus         1 ~~~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE   34 (328)
                      |++...|.|+|||-.|...+..+.+.|++|.+++
T Consensus        21 mm~~~~I~ilGgG~lg~~l~~aa~~lG~~v~~~d   54 (403)
T 3k5i_A           21 MWNSRKVGVLGGGQLGRMLVESANRLNIQVNVLD   54 (403)
T ss_dssp             CCSCCEEEEECCSHHHHHHHHHHHHHTCEEEEEE
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEE
Confidence            5667799999999999999999999999999999

>2f00_A UDP-N-acetylmuramate--L-alanine ligase; amide bond ligase, ATPase, bacterial cell WALL; 2.50A {Escherichia coli}

Probab=92.11  E-value=0.13  Score=46.56  Aligned_cols=33  Identities=15%  Similarity=0.217  Sum_probs=29.9

Q ss_pred             ccEEEECCChhHHH-HHHhhhhCCCeEEEeccCC
Q 020312            5 YDVIVLGTGLKECI-LSGLLSVDGLKVLHMDRND   37 (328)
Q Consensus         5 ~dvvIvG~G~aGl~-aA~~L~~~G~~V~vlE~~~   37 (328)
                      .+|.|||-|-+|++ +|..|.+.|++|++.|...
T Consensus        20 ~~v~viGiG~sG~s~~A~~l~~~G~~V~~~D~~~   53 (491)
T 2f00_A           20 RHIHFVGIGGAGMGGIAEVLANEGYQISGSDLAP   53 (491)
T ss_dssp             CEEEEETTTSTTHHHHHHHHHHTTCEEEEECSSC
T ss_pred             CEEEEEEcCHHHHHHHHHHHHhCCCeEEEECCCC
Confidence            46999999999998 8899999999999999854

>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix}

Probab=92.09  E-value=0.12  Score=43.81  Aligned_cols=32  Identities=22%  Similarity=0.366  Sum_probs=29.0

Q ss_pred             cEEEECCChhHHHHHHhhhhCCC-eEEEeccCC
Q 020312            6 DVIVLGTGLKECILSGLLSVDGL-KVLHMDRND   37 (328)
Q Consensus         6 dvvIvG~G~aGl~aA~~L~~~G~-~V~vlE~~~   37 (328)
                      +|+|||+|..|.+.|+.|+..|+ +|.++|.+.
T Consensus         1 KI~IiGaG~vG~~~a~~l~~~~l~el~L~Di~~   33 (308)
T 2d4a_B            1 MITILGAGKVGMATAVMLMMRGYDDLLLIARTP   33 (308)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHTCSCEEEECSST
T ss_pred             CEEEECcCHHHHHHHHHHHhCCCCEEEEEcCCh
Confidence            58999999999999999999888 699999863

>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum}

Probab=92.08  E-value=0.3  Score=45.63  Aligned_cols=55  Identities=15%  Similarity=0.143  Sum_probs=43.7

Q ss_pred             cHHHHHHHHHHHc-CcEEEcCcceeEEEecCCCcEEEEEe-cCceEEcCEEEECCCCCc
Q 020312          233 ELPQAFARLSAVY-GGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLP  289 (328)
Q Consensus       233 ~l~~~l~~~~~~~-G~~i~~~~~V~~I~~~~~~~v~~v~~-~g~~~~ad~vV~~~~~~~  289 (328)
                      .+.+.+.+.+++. |++++ +..|++|..+ ++.+.+|.+ +|+++.||.||.+.+..+
T Consensus       118 ~l~~~L~~~l~~~~GV~I~-~~~V~~L~~d-~g~V~GV~t~~G~~i~Ad~VVLATG~~s  174 (641)
T 3cp8_A          118 QYSLYMRRIVEHEPNIDLL-QDTVIGVSAN-SGKFSSVTVRSGRAIQAKAAILACGTFL  174 (641)
T ss_dssp             HHHHHHHHHHHTCTTEEEE-ECCEEEEEEE-TTEEEEEEETTSCEEEEEEEEECCTTCB
T ss_pred             HHHHHHHHHHHhCCCCEEE-eeEEEEEEec-CCEEEEEEECCCcEEEeCEEEECcCCCC
Confidence            4667777777774 99985 5699999988 788888887 778999999998776543

>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A

Probab=92.02  E-value=0.12  Score=43.19  Aligned_cols=33  Identities=24%  Similarity=0.328  Sum_probs=29.5

Q ss_pred             cccEEEECCChhHHHHHHhhhhC--CCeEEEeccC
Q 020312            4 EYDVIVLGTGLKECILSGLLSVD--GLKVLHMDRN   36 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~--G~~V~vlE~~   36 (328)
                      .++|.|||+|..|.+.|..|++.  |++|++++++
T Consensus         6 ~~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~   40 (290)
T 3b1f_A            6 EKTIYIAGLGLIGASLALGIKRDHPHYKIVGYNRS   40 (290)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSS
T ss_pred             cceEEEEeeCHHHHHHHHHHHhCCCCcEEEEEcCC
Confidence            35799999999999999999988  6899999875

>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A

Probab=91.98  E-value=0.11  Score=44.63  Aligned_cols=32  Identities=9%  Similarity=0.030  Sum_probs=29.8

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~   37 (328)
                      .+++|+|+|-.|...|..|.+.|+ |+++|++.
T Consensus       116 ~~viI~G~G~~g~~l~~~L~~~g~-v~vid~~~  147 (336)
T 1lnq_A          116 RHVVICGWSESTLECLRELRGSEV-FVLAEDEN  147 (336)
T ss_dssp             CEEEEESCCHHHHHHHTTGGGSCE-EEEESCGG
T ss_pred             CCEEEECCcHHHHHHHHHHHhCCc-EEEEeCCh
Confidence            479999999999999999999999 99999865

>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A

Probab=91.98  E-value=0.12  Score=44.16  Aligned_cols=34  Identities=21%  Similarity=0.231  Sum_probs=30.2

Q ss_pred             cccEEEEC-CChhHHHHHHhhhhCC--CeEEEeccCC
Q 020312            4 EYDVIVLG-TGLKECILSGLLSVDG--LKVLHMDRND   37 (328)
Q Consensus         4 ~~dvvIvG-~G~aGl~aA~~L~~~G--~~V~vlE~~~   37 (328)
                      .++|+|+| +|..|.+.|..|++.|  .+|.+++...
T Consensus         8 ~mKI~ViGAaG~VG~~la~~L~~~g~~~ev~l~Di~~   44 (326)
T 1smk_A            8 GFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVN   44 (326)
T ss_dssp             CEEEEEETTTSTTHHHHHHHHHHCTTEEEEEEEESSS
T ss_pred             CCEEEEECCCChHHHHHHHHHHhCCCCCEEEEEeCCC
Confidence            46899999 7999999999999999  8999998654

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=91.90  E-value=0.18  Score=40.09  Aligned_cols=31  Identities=19%  Similarity=0.284  Sum_probs=28.1

Q ss_pred             EEEECC-ChhHHHHHHhhh-hCCCeEEEeccCC
Q 020312            7 VIVLGT-GLKECILSGLLS-VDGLKVLHMDRND   37 (328)
Q Consensus         7 vvIvG~-G~aGl~aA~~L~-~~G~~V~vlE~~~   37 (328)
                      |+|.|| |-.|...|..|+ ++|++|+++.++.
T Consensus         8 vlVtGasg~iG~~~~~~l~~~~g~~V~~~~r~~   40 (221)
T 3r6d_A            8 ITILGAAGQIAQXLTATLLTYTDMHITLYGRQL   40 (221)
T ss_dssp             EEEESTTSHHHHHHHHHHHHHCCCEEEEEESSH
T ss_pred             EEEEeCCcHHHHHHHHHHHhcCCceEEEEecCc
Confidence            999995 899999999999 8999999998853

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=91.84  E-value=0.3  Score=44.84  Aligned_cols=40  Identities=28%  Similarity=0.370  Sum_probs=36.0

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEeccC--------CCCCCcc
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRN--------DYYGGES   43 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~--------~~~GG~~   43 (328)
                      +||++|||||.+|++||.++++.|.+|+|+|+.        ..+||.|
T Consensus        42 dYDviVIG~GpaG~~aA~~aa~~G~kValIE~~~~~~~~~k~~lGGtC   89 (542)
T 4b1b_A           42 DYDYVVIGGGPGGMASAKEAAAHGARVLLFDYVKPSSQGTKWGIGGTC   89 (542)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHTTTCCEEEECCCCCCTTCCCCCSSHHH
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccccccccccCCCCCcc
Confidence            489999999999999999999999999999974        3578865

>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*

Probab=91.84  E-value=0.14  Score=47.24  Aligned_cols=34  Identities=18%  Similarity=0.405  Sum_probs=32.0

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~   38 (328)
                      .+++|+|+|-.|...|..|.+.|++|+++|++..
T Consensus       349 ~~viIiG~G~~G~~la~~L~~~g~~v~vid~d~~  382 (565)
T 4gx0_A          349 ELIFIIGHGRIGCAAAAFLDRKPVPFILIDRQES  382 (565)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEECChH
Confidence            5799999999999999999999999999999765

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=91.84  E-value=0.17  Score=42.63  Aligned_cols=33  Identities=24%  Similarity=0.242  Sum_probs=30.4

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEeccC
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRN   36 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~   36 (328)
                      ...|.|||+|..|..+|..|...|.+|++++++
T Consensus       157 g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~d~~  189 (300)
T 2rir_A          157 GSQVAVLGLGRTGMTIARTFAALGANVKVGARS  189 (300)
T ss_dssp             TSEEEEECCSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCEEEEEcccHHHHHHHHHHHHCCCEEEEEECC
Confidence            357999999999999999999999999999975

>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}

Probab=91.71  E-value=0.18  Score=42.04  Aligned_cols=33  Identities=21%  Similarity=0.209  Sum_probs=29.7

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCC-eEEEeccC
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGL-KVLHMDRN   36 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~-~V~vlE~~   36 (328)
                      ...++|+|+|-+|-++|+.|++.|. +|+|+.|.
T Consensus       122 ~k~vlvlGaGGaaraia~~L~~~G~~~v~v~nRt  155 (282)
T 3fbt_A          122 NNICVVLGSGGAARAVLQYLKDNFAKDIYVVTRN  155 (282)
T ss_dssp             TSEEEEECSSTTHHHHHHHHHHTTCSEEEEEESC
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCC
Confidence            4579999999999999999999997 89999774

>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*

Probab=91.67  E-value=0.17  Score=41.71  Aligned_cols=31  Identities=29%  Similarity=0.343  Sum_probs=29.2

Q ss_pred             cEEEECCChhHHHHHHhhhhCCCeEEEeccC
Q 020312            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRN   36 (328)
Q Consensus         6 dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~   36 (328)
                      +++|||+|-.|...|..|.+.|.+|++++++
T Consensus       118 ~v~iiG~G~~g~~~a~~l~~~g~~v~v~~r~  148 (263)
T 2d5c_A          118 PALVLGAGGAGRAVAFALREAGLEVWVWNRT  148 (263)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             eEEEECCcHHHHHHHHHHHHCCCEEEEEECC
Confidence            7999999999999999999999999999875

>2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus}

Probab=90.93  E-value=0.033  Score=44.00  Aligned_cols=34  Identities=26%  Similarity=0.156  Sum_probs=30.7

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~   37 (328)
                      .++|.|||+|..|...|..|.+.|++|++++++.
T Consensus        19 ~~~I~iIG~G~mG~~la~~L~~~G~~V~~~~r~~   52 (201)
T 2yjz_A           19 QGVVCIFGTGDFGKSLGLKMLQCGYSVVFGSRNP   52 (201)
Confidence            3579999999999999999999999999998754

>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}

Probab=91.62  E-value=0.17  Score=40.15  Aligned_cols=32  Identities=22%  Similarity=0.246  Sum_probs=29.2

Q ss_pred             cEEEEC-CChhHHHHHHhhhhCCCeEEEeccCC
Q 020312            6 DVIVLG-TGLKECILSGLLSVDGLKVLHMDRND   37 (328)
Q Consensus         6 dvvIvG-~G~aGl~aA~~L~~~G~~V~vlE~~~   37 (328)
                      +|+|.| +|..|...+..|.++|++|+++.++.
T Consensus         2 ~ilItGatG~iG~~l~~~L~~~g~~V~~~~R~~   34 (219)
T 3dqp_A            2 KIFIVGSTGRVGKSLLKSLSTTDYQIYAGARKV   34 (219)
T ss_dssp             EEEEESTTSHHHHHHHHHHTTSSCEEEEEESSG
T ss_pred             eEEEECCCCHHHHHHHHHHHHCCCEEEEEECCc
Confidence            699999 59999999999999999999998864

>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}

Probab=91.59  E-value=0.2  Score=41.52  Aligned_cols=33  Identities=18%  Similarity=0.149  Sum_probs=29.3

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCC-eEEEeccC
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGL-KVLHMDRN   36 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~-~V~vlE~~   36 (328)
                      ...++|+|+|-+|.++|+.|++.|. +|+|+.|+
T Consensus       120 ~k~~lvlGaGg~~~aia~~L~~~G~~~v~i~~R~  153 (272)
T 3pwz_A          120 NRRVLLLGAGGAVRGALLPFLQAGPSELVIANRD  153 (272)
T ss_dssp             TSEEEEECCSHHHHHHHHHHHHTCCSEEEEECSC
T ss_pred             CCEEEEECccHHHHHHHHHHHHcCCCEEEEEeCC
Confidence            3579999999999999999999995 99999774

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=91.56  E-value=0.2  Score=41.79  Aligned_cols=33  Identities=21%  Similarity=0.213  Sum_probs=29.4

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCC-eEEEeccC
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGL-KVLHMDRN   36 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~-~V~vlE~~   36 (328)
                      ...++|+|+|-+|-++|..|++.|. +|+|+.|+
T Consensus       127 ~k~vlVlGaGG~g~aia~~L~~~G~~~v~i~~R~  160 (283)
T 3jyo_A          127 LDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLD  160 (283)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCSEEEEECSS
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCCEEEEEECC
Confidence            3579999999999999999999997 79999774

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=91.54  E-value=0.19  Score=42.53  Aligned_cols=33  Identities=15%  Similarity=0.293  Sum_probs=29.7

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCC-eEEEeccC
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGL-KVLHMDRN   36 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~-~V~vlE~~   36 (328)
                      ...++|+|+|-+|-++|..|++.|. +|+|+.|+
T Consensus       154 gk~~lVlGaGG~g~aia~~L~~~Ga~~V~i~nR~  187 (315)
T 3tnl_A          154 GKKMTICGAGGAATAICIQAALDGVKEISIFNRK  187 (315)
T ss_dssp             TSEEEEECCSHHHHHHHHHHHHTTCSEEEEEECS
T ss_pred             CCEEEEECCChHHHHHHHHHHHCCCCEEEEEECC
Confidence            3579999999999999999999997 89999875

>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*

Probab=91.53  E-value=0.2  Score=41.69  Aligned_cols=33  Identities=12%  Similarity=0.097  Sum_probs=29.5

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCC-eEEEeccC
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGL-KVLHMDRN   36 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~-~V~vlE~~   36 (328)
                      ...++|+|+|-+|-++|..|++.|. +|+|+.|+
T Consensus       126 ~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~  159 (281)
T 3o8q_A          126 GATILLIGAGGAARGVLKPLLDQQPASITVTNRT  159 (281)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTCCSEEEEEESS
T ss_pred             CCEEEEECchHHHHHHHHHHHhcCCCeEEEEECC
Confidence            4579999999999999999999995 99999874

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=91.47  E-value=0.2  Score=42.07  Aligned_cols=33  Identities=27%  Similarity=0.228  Sum_probs=30.4

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEeccC
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRN   36 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~   36 (328)
                      ...|.|||.|..|..+|..|...|.+|++++++
T Consensus       155 g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~dr~  187 (293)
T 3d4o_A          155 GANVAVLGLGRVGMSVARKFAALGAKVKVGARE  187 (293)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECC
Confidence            357999999999999999999999999999975

>1p3d_A UDP-N-acetylmuramate--alanine ligase; alpha/beta protein; HET: UMA ANP; 1.70A {Haemophilus influenzae} SCOP: c.5.1.1 c.59.1.1 c.72.2.1 PDB: 1gqq_A* 1p31_A* 1gqy_A*

Probab=91.47  E-value=0.14  Score=46.25  Aligned_cols=33  Identities=18%  Similarity=0.290  Sum_probs=29.8

Q ss_pred             ccEEEECCChhHHH-HHHhhhhCCCeEEEeccCC
Q 020312            5 YDVIVLGTGLKECI-LSGLLSVDGLKVLHMDRND   37 (328)
Q Consensus         5 ~dvvIvG~G~aGl~-aA~~L~~~G~~V~vlE~~~   37 (328)
                      .+|.|||-|-+|++ +|..|.++|++|++.|...
T Consensus        19 ~~i~viG~G~sG~s~~A~~l~~~G~~V~~~D~~~   52 (475)
T 1p3d_A           19 QQIHFIGIGGAGMSGIAEILLNEGYQISGSDIAD   52 (475)
T ss_dssp             CEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCC
T ss_pred             CEEEEEeecHHHHHHHHHHHHhCCCEEEEECCCC
Confidence            46999999999998 8899999999999999854

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=91.34  E-value=0.21  Score=45.02  Aligned_cols=34  Identities=15%  Similarity=0.096  Sum_probs=30.9

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~   37 (328)
                      ...|+|||.|..|..+|..|...|.+|+++|.+.
T Consensus       274 GktV~IiG~G~IG~~~A~~lka~Ga~Viv~d~~~  307 (494)
T 3ce6_A          274 GKKVLICGYGDVGKGCAEAMKGQGARVSVTEIDP  307 (494)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             cCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            4579999999999999999999999999999754

>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}

Probab=91.33  E-value=0.2  Score=41.80  Aligned_cols=32  Identities=19%  Similarity=0.256  Sum_probs=28.7

Q ss_pred             cccEEEECC-ChhHHHHHHhhhhCCCeEEEecc
Q 020312            4 EYDVIVLGT-GLKECILSGLLSVDGLKVLHMDR   35 (328)
Q Consensus         4 ~~dvvIvG~-G~aGl~aA~~L~~~G~~V~vlE~   35 (328)
                      ..+++|||. |+.|..+|..|.+.|..|+++.+
T Consensus       165 Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~~~  197 (300)
T 4a26_A          165 GKRAVVLGRSNIVGAPVAALLMKENATVTIVHS  197 (300)
T ss_dssp             TCEEEEECCCTTTHHHHHHHHHHTTCEEEEECT
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCCeEEEEeC
Confidence            368999995 56899999999999999999986

>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}

Probab=91.26  E-value=0.44  Score=41.30  Aligned_cols=54  Identities=24%  Similarity=0.397  Sum_probs=43.0

Q ss_pred             cHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe--cCc--eEEcCEEEECCCC
Q 020312          233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS--EGE--TAKCKKVVCDPSY  287 (328)
Q Consensus       233 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~--~g~--~~~ad~vV~~~~~  287 (328)
                      .+-+.|++.+++.|++++++++|+++..+ ++.++++..  +++  +++||.||.+-+.
T Consensus       103 ~~~~~L~~~a~~~G~~~~~~~~v~~~~~~-~~~~~~v~~~~~~~~~~~~a~~vIgAdG~  160 (397)
T 3oz2_A          103 KFDKHLAALAAKAGADVWVKSPALGVIKE-NGKVAGAKIRHNNEIVDVRAKMVIAADGF  160 (397)
T ss_dssp             HHHHHHHHHHHHHTCEEESSCCEEEEEEE-TTEEEEEEEEETTEEEEEEEEEEEECCCT
T ss_pred             HHHHHHHHHHHhcCcEEeeeeeeeeeeec-cceeeeeeecccccceEEEEeEEEeCCcc
Confidence            45667778888899999999999999998 888777664  443  5889999876554

>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*

Probab=91.24  E-value=0.25  Score=41.28  Aligned_cols=32  Identities=16%  Similarity=0.208  Sum_probs=29.1

Q ss_pred             cccEEEECCC-hhHHHHHHhhhhCCCeEEEecc
Q 020312            4 EYDVIVLGTG-LKECILSGLLSVDGLKVLHMDR   35 (328)
Q Consensus         4 ~~dvvIvG~G-~aGl~aA~~L~~~G~~V~vlE~   35 (328)
                      ..+|+|||+| +.|..+|..|.+.|..|+++.+
T Consensus       165 gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs  197 (301)
T 1a4i_A          165 GRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHS  197 (301)
T ss_dssp             TCEEEEECCCTTTHHHHHHHHHHTTCEEEEECT
T ss_pred             CCEEEEECCCchHHHHHHHHHHhCCCeEEEEEC
Confidence            4689999999 6899999999999999999964

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=91.15  E-value=0.21  Score=40.82  Aligned_cols=33  Identities=18%  Similarity=0.288  Sum_probs=29.6

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCC-eEEEeccC
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGL-KVLHMDRN   36 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~-~V~vlE~~   36 (328)
                      ..+|+|||+|-.|..+|..|+..|. +++|++..
T Consensus        28 ~~~VlvvG~GglG~~va~~La~~Gvg~i~lvD~d   61 (251)
T 1zud_1           28 DSQVLIIGLGGLGTPAALYLAGAGVGTLVLADDD   61 (251)
T ss_dssp             TCEEEEECCSTTHHHHHHHHHHTTCSEEEEECCC
T ss_pred             cCcEEEEccCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            4689999999999999999999995 78999874

>2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A

Probab=91.00  E-value=0.19  Score=41.98  Aligned_cols=37  Identities=32%  Similarity=0.403  Sum_probs=31.0

Q ss_pred             CCCcccEEEECC-ChhHHHHHHhhhhCC-CeEEEeccCC
Q 020312            1 MDEEYDVIVLGT-GLKECILSGLLSVDG-LKVLHMDRND   37 (328)
Q Consensus         1 ~~~~~dvvIvG~-G~aGl~aA~~L~~~G-~~V~vlE~~~   37 (328)
                      |+....|+|.|| |-.|...+.+|.++| ++|.++.++.
T Consensus         2 M~~~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~R~~   40 (299)
T 2wm3_A            2 MVDKKLVVVFGGTGAQGGSVARTLLEDGTFKVRVVTRNP   40 (299)
T ss_dssp             --CCCEEEEETTTSHHHHHHHHHHHHHCSSEEEEEESCT
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHhcCCceEEEEEcCC
Confidence            444567999999 999999999999999 9999998864

>3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A*

Probab=90.97  E-value=0.23  Score=41.83  Aligned_cols=32  Identities=16%  Similarity=0.164  Sum_probs=30.2

Q ss_pred             cEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (328)
Q Consensus         6 dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~   37 (328)
                      +|-+||-|.-|...|..|.++|++|++++++.
T Consensus         5 kIgfIGlG~MG~~mA~~L~~~G~~v~v~dr~~   36 (300)
T 3obb_A            5 QIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQ   36 (300)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSSH
T ss_pred             EEEEeeehHHHHHHHHHHHhCCCeEEEEcCCH
Confidence            69999999999999999999999999999864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	328
d1vg0a1	491	c.3.1.3 (A:3-444,A:558-606) Rab escort protein 1 {	1e-102
d1vg0a1	491	c.3.1.3 (A:3-444,A:558-606) Rab escort protein 1 {	2e-22
d2bcgg1	297	c.3.1.3 (G:5-301) Guanine nucleotide dissociation	3e-61
d1d5ta1	336	c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide di	4e-48
d2iida1	370	c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {M	3e-06
d2f5va1	379	c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {W	3e-04

>d1vg0a1 c.3.1.3 (A:3-444,A:558-606) Rab escort protein 1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 491

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Rab escort protein 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  307 bits (787), Expect = e-102
 Identities = 63/231 (27%), Positives = 114/231 (49%), Gaps = 9/231 (3%)

Query: 65  LGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDME 124
           +   R +N+D++ K + + G L+ +LI ++V++Y  FK +     + +G V +VP +  +
Sbjct: 216 IKEGRRFNIDLVSKLLYSRGLLIDLLIKSNVSRYAEFKNITRILAFREGTVEQVPCSRAD 275

Query: 125 ALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDNTIDFI 184
              S  + + EKR   KF  +  +Y+E  P  +   + T  T  E +    L  N   F+
Sbjct: 276 VFNSKQLTMVEKRMLMKFLTFCVEYEE-HPDEYRAYEGT--TFSEYLKTQKLTPNLQYFV 332

Query: 185 GHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFARLSAV 244
            H++A+  +        +D +K  K + + + R+ G +P+++PLYG GELPQ F R+ AV
Sbjct: 333 LHSIAMTSETTS---CTVDGLKATKKFLQCLGRY-GNTPFLFPLYGQGELPQCFCRMCAV 388

Query: 245 YGGTYMLNKPECKVEFDEEGKVVG--VTSEGETAKCKKVVCDPSYLPNKVI 293
           +GG Y L      +  D+E +     +   G+    K  + + SYL     
Sbjct: 389 FGGIYCLRHSVQCLVVDKESRKCKAVIDQFGQRIISKHFIIEDSYLSENTC 439

>d1vg0a1 c.3.1.3 (A:3-444,A:558-606) Rab escort protein 1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 491

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Rab escort protein 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 95.5 bits (237), Expect = 2e-22
 Identities = 22/72 (30%), Positives = 37/72 (51%)

Query: 3  EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPP 62
           ++DVIV+GTGL E I++   S  G +VLH+D   YYGG  +S +   L    +  ++  
Sbjct: 5  SDFDVIVIGTGLPESIIAAACSRSGQRVLHVDSRSYYGGNWASFSFSGLLSWLKEYQENN 64

Query: 63 AHLGSSRDYNVD 74
            +  +  +   
Sbjct: 65 DVVTENSMWQEQ 76

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 297

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  195 bits (495), Expect = 3e-61
 Identities = 159/296 (53%), Positives = 222/296 (75%), Gaps = 6/296 (2%)

Query: 1   MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGN-- 58
           +D +YDVIVLGTG+ ECILSGLLSVDG KVLH+D+ D+YGGE++S+ L QL+++F+ N  
Sbjct: 2   IDTDYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGGEAASVTLSQLYEKFKQNPI 61

Query: 59  --EQPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVH 116
             E+  +  G  RD+NVD+IPKF++ANG L  +LIHTDVT+Y+ FK V GS+V+ +GK++
Sbjct: 62  SKEERESKFGKDRDWNVDLIPKFLMANGELTNILIHTDVTRYVDFKQVSGSYVFKQGKIY 121

Query: 117 KVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGL 176
           KVPA ++EA+ SPLMGIFEKRR +KF  ++  Y E+D  TH+G+DL + T  E+  K+GL
Sbjct: 122 KVPANEIEAISSPLMGIFEKRRMKKFLEWISSYKEDDLSTHQGLDLDKNTMDEVYYKFGL 181

Query: 177 DDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQ 236
            ++T +FIGHA+AL  +D YL +PA  + +R+ LY +S+AR+    PY+YP+YGLGELPQ
Sbjct: 182 GNSTKEFIGHAMALWTNDDYLQQPARPSFERILLYCQSVARYGKS-PYLYPMYGLGELPQ 240

Query: 237 AFARLSAVYGGTYMLNKPECKVEFDEE-GKVVGVTSEGETAKCKKVVCDPSYLPNK 291
            FARLSA+YGGTYML+ P  +V + ++ GK  GV ++  T K   V+ DP+Y P K
Sbjct: 241 GFARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGVKTKLGTFKAPLVIADPTYFPEK 296

>d1d5ta1 c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide dissociation inhibitor, GDI {Cow (Bos taurus) [TaxId: 9913]} Length = 336

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  162 bits (410), Expect = 4e-48
 Identities = 185/295 (62%), Positives = 240/295 (81%), Gaps = 3/295 (1%)

Query: 1   MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLI-QLWKRFRGNE 59
           MDEEYDVIVLGTGL ECILSG++SV+G KVLHMDRN YYGGESSS+  + +L+KRF+  E
Sbjct: 3   MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLE 62

Query: 60  QPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVP 119
            PP  +G  RD+NVD+IPKF++ANG LV++L++T+VT+YL FK V+GSFVY  GK++KVP
Sbjct: 63  GPPETMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVP 122

Query: 120 ATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDN 179
           +T+ EAL S LMG+FEKRR RKF ++V ++DENDPKT EG+D    + R++  K+ L  +
Sbjct: 123 STETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQNTSMRDVYRKFDLGQD 182

Query: 180 TIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFA 239
            IDF GHALAL+R D YL++P L+T+ R+KLY+ES+AR+ G SPY+YPLYGLGELPQ FA
Sbjct: 183 VIDFTGHALALYRTDDYLDQPCLETINRIKLYSESLARY-GKSPYLYPLYGLGELPQGFA 241

Query: 240 RLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKVII 294
           RLSA+YGGTYMLNKP   +  +   KVVGV SEGE A+CK+++CDPSY+P++V I
Sbjct: 242 RLSAIYGGTYMLNKPVDDIIMENG-KVVGVKSEGEVARCKQLICDPSYVPDRVPI 295

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} Length = 370

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

 Score = 45.9 bits (107), Expect = 3e-06
 Identities = 42/290 (14%), Positives = 94/290 (32%), Gaps = 38/290 (13%)

Query: 6   DVIVLGTGLKECILSGL-----LSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQ 60
            V+++G G+     +GL     L+  G +V  ++ ++  GG   +        R      
Sbjct: 32  HVVIVGAGM-----AGLSAAYVLAGAGHQVTVLEASERPGGRVRTY-------RNEEAGW 79

Query: 61  PPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPA 120
                         ++ ++I      +      +   + + K +        G+V K P 
Sbjct: 80  YANLGPMRLPEKHRIVREYIRKFDLRLNEFSQENDNAWYFIKNIRKKV----GEVKKDPG 135

Query: 121 TDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRE-LIAKYGLDDN 179
                +K    G    +   +    V +  +    ++        +T+E LI +  L   
Sbjct: 136 LLKYPVKPSEAGKSAGQLYEESLGKVVEELKRTNCSYILNKYDTYSTKEYLIKEGDLSPG 195

Query: 180 TIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFA 239
            +D IG    L  +D       ++++K   +       F     +   + G+ +LP A  
Sbjct: 196 AVDMIGD---LLNEDSGYYVSFIESLKHDDI-------FAYEKRFDEIVDGMDKLPTAMY 245

Query: 240 RLSAVYGGTYMLNKPECKVEFDEEGKVVGV---TSEGETAKCKKVVCDPS 286
           R           N    K++ +++   V     + E  +     V+   +
Sbjct: 246 RD---IQDKVHFNAQVIKIQQNDQKVTVVYETLSKETPSVTADYVIVCTT 292

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]} Length = 379

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

 Score = 40.0 bits (92), Expect = 3e-04
 Identities = 12/31 (38%), Positives = 18/31 (58%)

Query: 1  MDEEYDVIVLGTGLKECILSGLLSVDGLKVL 31
          MD +YDV+++G+G   C  +  L   G KV 
Sbjct: 1  MDIKYDVVIVGSGPIGCTYARELVGAGYKVA 31

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	328
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	100.0
d1vg0a1	491	Rab escort protein 1 {Rat (Rattus norvegicus) [Tax	100.0
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	100.0
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	99.91
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	99.89
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	99.86
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	99.76
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	99.75
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	99.74
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	99.74
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	99.7
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	99.69
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	99.66
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	99.64
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	99.61
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	99.6
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	99.56
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	99.56
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	99.52
d3coxa1	370	Cholesterol oxidase of GMC family {Brevibacterium	99.42
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	99.38
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	99.34
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	99.26
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	99.21
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	99.17
d1kf6a2	311	Fumarate reductase {Escherichia coli [TaxId: 562]}	99.17
d1ju2a1	351	Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxI	99.16
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	99.15
d1neka2	330	Succinate dehydogenase {Escherichia coli [TaxId: 5	99.15
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	99.1
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	99.1
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	99.08
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	99.08
d1kdga1	360	Flavoprotein domain of flavocytochrome cellobiose	99.02
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	99.02
d2f5va1	379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	98.99
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	98.99
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	98.98
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	98.98
d1cf3a1	385	Glucose oxidase {Aspergillus niger [TaxId: 5061]}	98.97
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	98.92
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	98.91
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	98.9
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	98.89
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	98.88
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	98.88
d1chua2	305	L-aspartate oxidase {Escherichia coli [TaxId: 562]	98.87
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	98.86
d2gjca1	311	Thiazole biosynthetic enzyme Thi4 {Baker's yeast (	98.85
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	98.82
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	98.79
d1mo9a1	261	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	98.79
d1jnra2	356	Adenylylsulfate reductase A subunit {Archaeon Arch	98.75
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	98.75
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	98.74
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	98.74
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	98.73
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	98.72
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	98.68
d2cula1	230	GidA-related protein TTHA1897 {Thermus thermophilu	98.68
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	98.67
d1feca1	240	Trypanothione reductase {Crithidia fasciculata [Ta	98.62
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	98.61
d1aoga1	238	Trypanothione reductase {Trypanosoma cruzi [TaxId:	98.59
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	98.48
d1gpea1	391	Glucose oxidase {Penicillium amagasakiense [TaxId:	98.47
d1xdia1	233	Dihydrolipoamide dehydrogenase {Mycobacterium tube	98.25
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	98.24
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	98.23
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	98.19
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	98.17
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	98.11
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	98.1
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	98.0
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	97.99
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	97.97
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	97.9
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	97.9
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	97.85
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	97.76
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	97.75
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	97.74
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	97.69
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	97.69
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	97.68
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	97.63
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	97.62
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	97.62
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	97.6
d1m6ia1	213	Apoptosis-inducing factor (AIF) {Human (Homo sapie	97.59
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	97.56
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	97.54
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	97.52
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	97.44
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	97.42
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	97.28
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	97.28
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	97.24
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	97.22
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	97.21
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	97.19
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	97.14
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	97.11
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	97.1
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	97.05
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	97.05
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	97.03
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	97.02
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	97.02
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	97.0
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	96.95
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	96.89
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	96.84
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	96.83
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	96.79
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	96.74
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	96.74
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	96.58
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	96.38
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	96.37
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	96.28
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	96.24
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	96.19
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	96.13
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	95.98
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	95.95
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	95.88
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	95.84
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	95.77
d1trba2	126	Thioredoxin reductase {Escherichia coli [TaxId: 56	95.76
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	95.74
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	95.73
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	95.71
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	95.71
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	95.67
d1fl2a2	126	Alkyl hydroperoxide reductase subunit F (AhpF), C-	95.64
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	95.62
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	95.57
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	95.5
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	95.5
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	95.49
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	95.43
d1vdca2	130	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	95.41
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	95.4
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	95.37
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	95.33
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	95.29
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	95.24
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	95.2
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	95.17
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	95.04
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	95.01
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	94.94
d1ps9a2	162	2,4-dienoyl-CoA reductase, C-terminal domain {Esch	94.88
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	94.82
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	94.71
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	94.64
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	94.61
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	94.59
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	94.45
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	94.25
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	93.83
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	93.59
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	93.42
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	93.3
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	93.28
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	93.24
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	93.02
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	92.99
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	92.97
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	92.94
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	92.93
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	92.92
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	92.87
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	92.73
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	92.72
d1a9xa4	121	Carbamoyl phosphate synthetase (CPS), large subuni	92.69
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	92.67
d1w4xa2	235	Phenylacetone monooxygenase {Thermobifida fusca [T	92.66
d1a9xa3	127	Carbamoyl phosphate synthetase (CPS), large subuni	92.64
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	92.59
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	92.24
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	92.23
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	91.93
d1m6ia1	213	Apoptosis-inducing factor (AIF) {Human (Homo sapie	91.88
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	91.79
d2cula1	230	GidA-related protein TTHA1897 {Thermus thermophilu	91.7
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	91.46
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	91.35
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	91.07
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	91.05
d1fjha_	257	3-alpha-hydroxysteroid dehydrogenase {Comamonas te	90.71
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	90.41
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	90.28
d1cjca1	225	Adrenodoxin reductase of mitochondrial p450 system	90.25
d2dt5a2	126	Transcriptional repressor Rex, C-terminal domain {	90.21
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	90.02
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	89.87
d1vjta1	193	Putative alpha-glucosidase TM0752 {Thermotoga mari	89.82
d1lqta1	216	Ferredoxin:NADP reductase FprA {Mycobacterium tube	89.6
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	89.51
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	89.49
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	89.17
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	89.04
d1udca_	338	Uridine diphosphogalactose-4-epimerase (UDP-galact	88.9
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	88.89
d1ps9a2	162	2,4-dienoyl-CoA reductase, C-terminal domain {Esch	88.89
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	88.83
d1ooea_	235	Dihydropteridin reductase (pteridine reductase) {N	88.81
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	88.6
d1obba1	171	Alpha-glucosidase AglA {Thermotoga maritima [TaxId	87.9
d1dhra_	236	Dihydropteridin reductase (pteridine reductase) {R	87.78
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	87.77
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	87.63
d2h7ma1	268	Enoyl-ACP reductase {Mycobacterium tuberculosis, T	87.44
d2o23a1	248	Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho	87.03
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	86.94
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	86.81
d1yovb1	426	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	86.53
d1uaya_	241	Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t	86.4
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	86.28
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	86.26
d1ek6a_	346	Uridine diphosphogalactose-4-epimerase (UDP-galact	86.18
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	86.18
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	85.73
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	85.41
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	85.38
d1vkza2	90	Glycinamide ribonucleotide synthetase (GAR-syn), N	85.38
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	85.32
d2ax3a2	211	Hypothetical protein TM0922, N-terminal domain {Th	85.28
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	85.19
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	85.13
d1i24a_	393	Sulfolipid biosynthesis protein SQD1 {Thale cress	85.11
d1trba2	126	Thioredoxin reductase {Escherichia coli [TaxId: 56	85.03
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	85.01
d2ag5a1	245	Dehydrogenase/reductase SDR family member 6, DHRS6	84.76
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	84.61
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	84.6
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	84.42
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	84.39
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	84.14
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	84.13
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	84.07
d1vl6a1	222	Malate oxidoreductase (malic enzyme) {Thermotoga m	84.04
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	83.98
d1uzma1	237	beta-keto acyl carrier protein reductase {Mycobact	83.96
d1e7wa_	284	Dihydropteridin reductase (pteridine reductase) {L	83.85
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	83.84
d1y1pa1	342	Aldehyde reductase II {Sporobolomyces salmonicolor	83.77
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	83.75
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	83.72
d1fl2a2	126	Alkyl hydroperoxide reductase subunit F (AhpF), C-	83.4
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	83.11
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	82.96
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	82.7
d1jzta_	243	Hypothetical protein YNL200c (YNU0_YEAST) {Baker's	82.68
d2b69a1	312	UDP-glucuronate decarboxylase 1 {Human (Homo sapie	82.58
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	82.47
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	82.47
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	82.01
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	81.99
d1up7a1	162	6-phospho-beta-glucosidase {Thermotoga maritima [T	81.92
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	81.86
d1rpna_	321	GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos	81.85
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	81.8
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	81.73
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	81.68
d1fcda2	141	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	81.67
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	81.57
d1gz6a_	302	(3R)-hydroxyacyl-CoA dehydrogenase domain of estra	81.43
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	81.31
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	81.05
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	81.04
d2hjsa1	144	Usg-1 protein homolog PA3116 {Pseudomonas aerugino	80.76
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	80.74
d2q46a1	252	Hypothetical protein At5g02240 (T7H20_290) {Thale	80.67
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	80.33
d1orra_	338	CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId:	80.28
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	80.28
d2blla1	342	Polymyxin resistance protein ArnA (PrmI) {Escheric	80.18
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	80.15
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	80.13
d1oaaa_	259	Sepiapterin reductase {Mouse (Mus musculus) [TaxId	80.1
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	80.09

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.9e-39  Score=272.00  Aligned_cols=290  Identities=55%  Similarity=1.003  Sum_probs=226.2

Q ss_pred             CCCcccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCcccccchHHHHhhhcCCCCCC----CccCCCCCeEEecC
Q 020312            1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPP----AHLGSSRDYNVDMI   76 (328)
Q Consensus         1 ~~~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~g   76 (328)
                      |+++|||||||||++||+||++|+++|++|+||||++++||+++|.+.+++...+.......    ...+...+|.+|++
T Consensus         2 m~~~yDviViGaG~~Gl~~A~~La~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~   81 (297)
T d2bcgg1           2 IDTDYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGGEAASVTLSQLYEKFKQNPISKEERESKFGKDRDWNVDLI   81 (297)
T ss_dssp             CCCBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCEECHHHHHHHHCSSCCCHHHHHHHHCCGGGCCEESS
T ss_pred             CCCcCCEEEECcCHHHHHHHHHHHHCCCCEEEEcCCCCCCcceEEeeccccccccCCCccccccccccccccccceeccC
Confidence            88999999999999999999999999999999999999999999998876655544321111    12334457889999


Q ss_pred             cceEecCchHHHHHHhcCCCCeeEEEeeCceeEeeCCeEEEcCCCchhhhcCCCCChhhHHHHHHHHHHHhhcccCCCcc
Q 020312           77 PKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKT  156 (328)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (328)
                      ++++...+.....+...+....+.+...++.+.+.++....+|....+.+.........+..+.++...+..+.......
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (297)
T d2bcgg1          82 PKFLMANGELTNILIHTDVTRYVDFKQVSGSYVFKQGKIYKVPANEIEAISSPLMGIFEKRRMKKFLEWISSYKEDDLST  161 (297)
T ss_dssp             CCBEETTSHHHHHHHHHTGGGTCCEEECCCEEEEETTEEEECCSSHHHHHHCTTSCHHHHHHHHHHHHHHHHCBTTBGGG
T ss_pred             cccccCCCcceeeeeeccccccccccccCcccccccCCccccccchhhhhhccccccccchhhhhhhhhhhhhhhccccc
Confidence            99999888888877777777777788888888888899999987767777777777767667777777776665433333


Q ss_pred             cccccCCCCCHHHHHHhcCCChhHHHHHhhhhhcccCCCCCCCchHHHHHHHHHHHHhhhcccCCCeEEeecCCcCcHHH
Q 020312          157 HEGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQ  236 (328)
Q Consensus       157 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~gG~~~l~~  236 (328)
                      .........++.++++..++++..++++...........+...+....+..+..+..+...+ ...++.+|+||++.+++
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~gG~~~l~~  240 (297)
T d2bcgg1         162 HQGLDLDKNTMDEVYYKFGLGNSTKEFIGHAMALWTNDDYLQQPARPSFERILLYCQSVARY-GKSPYLYPMYGLGELPQ  240 (297)
T ss_dssp             STTCCTTTSBHHHHHHHTTCCHHHHHHHHHHTSCCSSSGGGGSBHHHHHHHHHHHHHHHHHH-SSCSEEEETTCTTHHHH
T ss_pred             hhhhcccchhhhhhhhhhccCHHHHHHHHHHHhhhccccccchhhhhhhhhhhhhhhccccc-ccCcceeccCcHHHHHH
Confidence            33445577899999999999998887776655444444444445555555555555555544 45678999999999999


Q ss_pred             HHHHHHHHcCcEEEcCcceeEEEecC-CCcEEEEEecCceEEcCEEEECCCCCcch
Q 020312          237 AFARLSAVYGGTYMLNKPECKVEFDE-EGKVVGVTSEGETAKCKKVVCDPSYLPNK  291 (328)
Q Consensus       237 ~l~~~~~~~G~~i~~~~~V~~I~~~~-~~~v~~v~~~g~~~~ad~vV~~~~~~~~~  291 (328)
                      +|++.++++|++|++|++|++|+.++ ++++++|+++|++++||+||++|+++|++
T Consensus       241 ~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VI~~~s~~~~~  296 (297)
T d2bcgg1         241 GFARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGVKTKLGTFKAPLVIADPTYFPEK  296 (297)
T ss_dssp             HHHHHHHHTTCEEECSCCCCEEEEETTTTEEEEEEETTEEEECSCEEECGGGCGGG
T ss_pred             HHHHHHHhcCCEEEeCCEeeEEEEECCCCEEEEEEcCCEEEECCEEEEChhhccCC
Confidence            99999999999999999999998753 46678888899999999999999998874

>d1vg0a1 c.3.1.3 (A:3-444,A:558-606) Rab escort protein 1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Rab escort protein 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=2.3e-33  Score=247.38  Aligned_cols=285  Identities=31%  Similarity=0.601  Sum_probs=245.3

Q ss_pred             CCCcccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCcccccchHHHHhhhcCCCC--------------------
Q 020312            1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQ--------------------   60 (328)
Q Consensus         1 ~~~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~--------------------   60 (328)
                      .|.+|||||+|-|+.-...|..|++.|.+|+-+|++++-||..+|.++.++...+.....                    
T Consensus         3 lP~e~DVII~GTGL~ESILAaAlSr~GkkVLHiD~N~yYGg~~aSl~~~~L~~w~~~~~~~~~~~~~~~~~~~~~~e~e~   82 (491)
T d1vg0a1           3 LPSDFDVIVIGTGLPESIIAAACSRSGQRVLHVDSRSYYGGNWASFSFSGLLSWLKEYQENNDVVTENSMWQEQILENEE   82 (491)
T ss_dssp             CCSBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCEECHHHHHHHHHHTC----------CGGGGCCTTEE
T ss_pred             CCCccCEEEECCChHHHHHHHHHHhcCCEEEEecCCCcCCCcccceeHHHHHHHHHhhhcccccccccccccccccccch
Confidence            367899999999999999999999999999999999999999999998876543311000                    


Q ss_pred             -----------------------------------------------------------------------C--------
Q 020312           61 -----------------------------------------------------------------------P--------   61 (328)
Q Consensus        61 -----------------------------------------------------------------------~--------   61 (328)
                                                                                             .        
T Consensus        83 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~  162 (491)
T d1vg0a1          83 AIPLSSKDKTIQHVEVFCYASQDLHKDVEEAGALQKNHASVTSAQSAEAAEAAETSCLPTAVEPLSMGSCEIPAEQSQCP  162 (491)
T ss_dssp             EEEBCSSCCCEEEEEEEECSCC----------------------------------------------------------
T ss_pred             hcccccccccccccceeecccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence                                                                                   0        


Q ss_pred             -CC-------------------------------------------------ccCCCCCeEEecCcceEecCchHHHHHH
Q 020312           62 -PA-------------------------------------------------HLGSSRDYNVDMIPKFIIANGALVRVLI   91 (328)
Q Consensus        62 -~~-------------------------------------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~   91 (328)
                       |+                                                 -.+..++|++|+.|.++++.+.+++.+.
T Consensus       163 ~~e~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~r~~niDL~Pk~l~a~g~lv~~Li  242 (491)
T d1vg0a1         163 GPESSPEVNDAEATGKKENSDAKSSTEEPSENVPKVQDNTETPKKNRITYSQIIKEGRRFNIDLVSKLLYSRGLLIDLLI  242 (491)
T ss_dssp             ----------------------------------------------CCCHHHHHHTGGGCCEESSCCCEESSSHHHHHHH
T ss_pred             CcccccccccccccccccccccccccccccccccccccccccccccccchhhhhcccccccccccchheecccHHHHHHH
Confidence             00                                                 0344688999999999999999999999


Q ss_pred             hcCCCCeeEEEeeCceeEeeCCeEEEcCCCchhhhcCCCCChhhHHHHHHHHHHHhhcccCCCcccccccCCCCCHHHHH
Q 020312           92 HTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELI  171 (328)
Q Consensus        92 ~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~  171 (328)
                      ++++.+|++|+..++.|++.+|+..++|.++.+.|.+.++++++|+.+++|+.++.++.. .+..+.  .++..++.+++
T Consensus       243 ~S~v~rYlEFk~v~~~~v~~~g~~~~VP~sr~eif~s~~l~l~eKR~lmkFl~~v~~~~~-~~~~~~--~~~~~~~~e~l  319 (491)
T d1vg0a1         243 KSNVSRYAEFKNITRILAFREGTVEQVPCSRADVFNSKQLTMVEKRMLMKFLTFCVEYEE-HPDEYR--AYEGTTFSEYL  319 (491)
T ss_dssp             HHTGGGGCCEEECCEEEEESSSSEEECCCSHHHHHHCSSSCHHHHHHHHHHHHHHHTGGG-CHHHHH--TTTTSBHHHHH
T ss_pred             HcChhhheeEEEeceEEEecCCeEEECCCCHHHHhcCCCCCHHHHHHHHHHHHHHhhccC-Cccccc--cccCCcHHHHH
Confidence            999999999999999999999999999999999999999999999999999999988764 333333  23578999999


Q ss_pred             HhcCCChhHHHHHhhhhhcccCCCCCCCchHHHHHHHHHHHHhhhcccCCCeEEeecCCcCcHHHHHHHHHHHcCcEEEc
Q 020312          172 AKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYML  251 (328)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~gG~~~l~~~l~~~~~~~G~~i~~  251 (328)
                      +.+++++.+.+++.++++++..+.+   +...++.++.+|+.++++| |.+||.||.+|.+.|+++++|.+.-.|+.+.+
T Consensus       320 ~~~~l~~~~~~~i~~aial~~~~~~---~~~~~l~ri~~yl~Slg~y-G~spflyp~YG~gEipQ~FcR~~AV~Gg~Y~L  395 (491)
T d1vg0a1         320 KTQKLTPNLQYFVLHSIAMTSETTS---CTVDGLKATKKFLQCLGRY-GNTPFLFPLYGQGELPQCFCRMCAVFGGIYCL  395 (491)
T ss_dssp             TTSSSCHHHHHHHHHHTTC--CCSC---BHHHHHHHHHHHHHHTTSS-SSSSEEEETTCTTHHHHHHHHHHHHTTCEEES
T ss_pred             HHcCCChHHHHHHHhheeccCCCCc---cHHHHHHHHHHHHHHHHhh-CCCCeEeecCCcchHHHHHHHHHHhcCcEEEc
Confidence            9999999999999999988755433   4677888999999999999 88999999999999999999999999999999


Q ss_pred             CcceeEEEec-CCCcEEEEEe-cCceEEcCEEEECCCCCcchh
Q 020312          252 NKPECKVEFD-EEGKVVGVTS-EGETAKCKKVVCDPSYLPNKV  292 (328)
Q Consensus       252 ~~~V~~I~~~-~~~~v~~v~~-~g~~~~ad~vV~~~~~~~~~~  292 (328)
                      |++|.+|..+ +++++.+|.. +|+++.|+.||+.++++|.+.
T Consensus       396 ~~~i~~i~~d~e~~~~~~v~~~~g~~i~~k~vI~~psy~p~~~  438 (491)
T d1vg0a1         396 RHSVQCLVVDKESRKCKAVIDQFGQRIISKHFIIEDSYLSENT  438 (491)
T ss_dssp             SCCEEEEEEETTTCCEEEEEETTSCEEECSEEEEEGGGBCTTT
T ss_pred             CCccceEEEecCCCeEEEEEccCCcEEecCeEEECHHhCCccc
Confidence            9999999985 3677888887 789999999999999887654

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=1.5e-23  Score=183.07  Aligned_cols=250  Identities=17%  Similarity=0.195  Sum_probs=140.8

Q ss_pred             cEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCcccccchHHHHhhhcCCCCCCCccCCCCCeEEecCcceEecCch
Q 020312            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIANGA   85 (328)
Q Consensus         6 dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~   85 (328)
                      ||||||||++||+||++|+++|++|+|||+++++||++.|....                   .++.+|+|++++...++
T Consensus         1 DViVIGaG~aGL~aA~~L~~~G~~V~VlE~~~~~GGr~~t~~~~-------------------~g~~~d~G~~~~~~~~~   61 (383)
T d2v5za1           1 DVVVVGGGISGMAAAKLLHDSGLNVVVLEARDRVGGRTYTLRNQ-------------------KVKYVDLGGSYVGPTQN   61 (383)
T ss_dssp             SEEEECCBHHHHHHHHHHHHTTCCEEEEESSSSSBTTCCEECCT-------------------TTSCEESSCCEECTTCH
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcceeeEEECC-------------------CCcEEeCCceEeCCCCh
Confidence            89999999999999999999999999999999999999987532                   45779999999987655


Q ss_pred             HHH-HHHhcCCCCeeEEEeeCceeEe-eCCeEEEcCCCchhhhcCCCCChhhHHHHHHHHHHHhh----cccCCCcc-cc
Q 020312           86 LVR-VLIHTDVTKYLYFKAVDGSFVY-NKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQD----YDENDPKT-HE  158 (328)
Q Consensus        86 ~~~-~~~~~~~~~~l~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~-~~  158 (328)
                      .+. ++.+.++...  .........+ .+......... ......    .........+......    .....+.. ..
T Consensus        62 ~~~~l~~~lgl~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (383)
T d2v5za1          62 RILRLAKELGLETY--KVNEVERLIHHVKGKSYPFRGP-FPPVWN----PITYLDHNNFWRTMDDMGREIPSDAPWKAPL  134 (383)
T ss_dssp             HHHHHHHHTTCCEE--ECCCSSEEEEEETTEEEEECSS-SCCCCS----HHHHHHHHHHHHHHHHHHTTSCTTCGGGSTT
T ss_pred             HHHHHHHHcCCcce--eccCccceEEecCccccccccc-ccchhh----hhhhhhHHHHHHHHHHhhhhcccccccchhh
Confidence            443 3334444311  1111111122 22222222211 000000    0111122222222222    11111111 11


Q ss_pred             cccCCCCCHHHHHHhcCCChhHHHHHhhhhhcccCCCCCCCchHHHHHHHHHH---HHhhhcccCCCeEEeecCCcCcHH
Q 020312          159 GMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLY---AESIARFQGGSPYIYPLYGLGELP  235 (328)
Q Consensus       159 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~---~~~~~~~~g~~~~~~~~gG~~~l~  235 (328)
                      ....+..++.+++.+.........+.....................+......   ....... .......+.+|++.++
T Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  213 (383)
T d2v5za1         135 AEEWDNMTMKELLDKLCWTESAKQLATLFVNLCVTAETHEVSALWFLWYVKQCGGTTRIISTT-NGGQERKFVGGSGQVS  213 (383)
T ss_dssp             HHHHHTSBHHHHHHHHCSSHHHHHHHHHHHHHHHSSCTTTSBHHHHHHHHHTTTCHHHHHCST-TSTTSEEETTCTHHHH
T ss_pred             hhhhhhhHHHHHHHHhccchHHHHHHHHhhhhhhccccchhhHHHHHHHHHhhcccccccccc-cCcceeeeccchhHHH
Confidence            11234578888888877766555444332211111111112222222111111   0111111 2334466788888888


Q ss_pred             HHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe-cCceEEcCEEEECCCC
Q 020312          236 QAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSY  287 (328)
Q Consensus       236 ~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~-~g~~~~ad~vV~~~~~  287 (328)
                      ++++   ++.|++|++|++|++|..+ ++++. |++ +|++++||+||++.++
T Consensus       214 ~~l~---~~~g~~i~~~~~v~~I~~~-~~~v~-v~~~~g~~~~ad~vI~a~p~  261 (383)
T d2v5za1         214 ERIM---DLLGDRVKLERPVIYIDQT-RENVL-VETLNHEMYEAKYVISAIPP  261 (383)
T ss_dssp             HHHH---HHHGGGEEESCCEEEEECS-SSSEE-EEETTSCEEEESEEEECSCG
T ss_pred             HHHH---HHcCCeEEecCcceEEEec-CCeEE-EEECCCCEEECCEEEECCCH
Confidence            8875   5579999999999999988 77765 555 8899999999988653

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=99.89  E-value=1.1e-21  Score=167.81  Aligned_cols=248  Identities=14%  Similarity=0.108  Sum_probs=131.3

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCcccccchHHHHhhhcCCCCCCCccCCCCCeEEecCcceEecCc
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIANG   84 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~   84 (328)
                      +||+|||||++||+||++|+++|++|+||||++++||++.|+..                    .++.+|.|++++...+
T Consensus         1 m~V~IIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GG~~~t~~~--------------------~g~~~d~G~~~~~~~~   60 (347)
T d2ivda1           1 MNVAVVGGGISGLAVAHHLRSRGTDAVLLESSARLGGAVGTHAL--------------------AGYLVEQGPNSFLDRE   60 (347)
T ss_dssp             CCEEEECCBHHHHHHHHHHHTTTCCEEEECSSSSSBTTCCEEEE--------------------TTEEEESSCCCEETTC
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCCceEEEEee--------------------CCEEEecCceEEecCC
Confidence            58999999999999999999999999999999999999999865                    4688999999998776


Q ss_pred             hHHHHHH-hcCCCCeeEEEeeCce--eEeeCCeEEEcCCCchhhhcCCCCChhhHHHHHHHHHHHhhcccCCCccccccc
Q 020312           85 ALVRVLI-HTDVTKYLYFKAVDGS--FVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMD  161 (328)
Q Consensus        85 ~~~~~~~-~~~~~~~l~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (328)
                      +.+..+. ..+....+........  ............................      ............     ...
T Consensus        61 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~-----~~~  129 (347)
T d2ivda1          61 PATRALAAALNLEGRIRAADPAAKRRYVYTRGRLRSVPASPPAFLASDILPLGA------RLRVAGELFSRR-----APE  129 (347)
T ss_dssp             HHHHHHHHHTTCGGGEECSCSSCCCEEEEETTEEEECCCSHHHHHTCSSSCHHH------HHHHHGGGGCCC-----CCT
T ss_pred             HHHHHHHHHhcccccceeccccccceeeeccccccccccchhhhhhhhhccchh------hHHHHhhhhhhh-----ccc
Confidence            6555444 3444443322221111  1112223333332322233322222211      111111111100     001


Q ss_pred             CCCCCHHHHHHhcCCChhHHHHHhhhhhcccCCCCCCCchHHHHHHH---H--------------HHHHh----h-hccc
Q 020312          162 LTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRM---K--------------LYAES----I-ARFQ  219 (328)
Q Consensus       162 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~---~--------------~~~~~----~-~~~~  219 (328)
                      ....++.++++.............+.....................+   .              .....    . ....
T Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (347)
T d2ivda1         130 GVDESLAAFGRRHLGHRATQVLLDAVQTGIYAGDVEQLSVAATFPMLVKMEREHRSLILGAIRAQKAQRQAALPAGTAPK  209 (347)
T ss_dssp             TCCCBHHHHHHHHTCHHHHHHTHHHHHHHHHCCCTTTBBHHHHCHHHHHHHHHHSSHHHHHHHHHHHHTCC----CCSCC
T ss_pred             cccccHHHHHHhhhhcchhccccchhhhhhhccccchhhHHHHHHHHHHhhhhccchhhhhhhccchhcccccccccccc
Confidence            13345666555442222111111111100000000001100000000   0              00000    0 0000


Q ss_pred             CCCeEEeecCCcCcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe-cC--ceEEcCEEEECCCC
Q 020312          220 GGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EG--ETAKCKKVVCDPSY  287 (328)
Q Consensus       220 g~~~~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~-~g--~~~~ad~vV~~~~~  287 (328)
                      .......+++|++.+++++++   ..|++|++|++|++|..+ ++++..+.. ++  ++++||+||++++.
T Consensus       210 ~~~~~~~~~~g~~~~~~~l~~---~~g~~i~~~~~V~~I~~~-~~~~~v~~~~~~~~~~~~ad~VV~a~p~  276 (347)
T d2ivda1         210 LSGALSTFDGGLQVLIDALAA---SLGDAAHVGARVEGLARE-DGGWRLIIEEHGRRAELSVAQVVLAAPA  276 (347)
T ss_dssp             CCCCEEEETTCTHHHHHHHHH---HHGGGEESSEEEEEEECC---CCEEEEEETTEEEEEECSEEEECSCH
T ss_pred             ccCcccccCCchHHHHHHHHH---HhhcccccCCEEEEEEEe-CCeEEEEEEcCCeEEEEECCEEEECCCH
Confidence            123456778999999988864   458999999999999988 665544433 33  46999999988753

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=99.86  E-value=1.8e-20  Score=162.21  Aligned_cols=246  Identities=18%  Similarity=0.213  Sum_probs=134.6

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCcccccchHHHHhhhcCCCCCCCccCCCCCeEEecCcceEecC
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIAN   83 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~   83 (328)
                      +.+|+|||||++||+||++|+++|++|+|||+++++||++.|...+                  ..++.+|.|++++...
T Consensus        30 pkkV~IIGaG~aGLsaA~~L~~~G~~V~vlE~~~~~GG~~~t~~~~------------------~~g~~~d~G~~~~~~~   91 (370)
T d2iida1          30 PKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPGGRVRTYRNE------------------EAGWYANLGPMRLPEK   91 (370)
T ss_dssp             CCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSSSSBTTCCEEEET------------------TTTEEEESSCCCEETT
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCCeeEEEecC------------------CCCceeccCceeecCc
Confidence            4699999999999999999999999999999999999999987642                  2568999999998877


Q ss_pred             chHHHHHHh-cCCCCeeEEEe-eCceeEeeCCeEEEcCCC--chhhhcCCCC-----ChhhH---HHHHHHHHHHhhccc
Q 020312           84 GALVRVLIH-TDVTKYLYFKA-VDGSFVYNKGKVHKVPAT--DMEALKSPLM-----GIFEK---RRARKFFIYVQDYDE  151 (328)
Q Consensus        84 ~~~~~~~~~-~~~~~~l~~~~-~~~~~~~~~g~~~~~~~~--~~~~~~~~~~-----~~~~~---~~~~~~~~~~~~~~~  151 (328)
                      .+....+.+ .+.. ...+.. ....+.+..+........  ........+.     .....   ...............
T Consensus        92 ~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (370)
T d2iida1          92 HRIVREYIRKFDLR-LNEFSQENDNAWYFIKNIRKKVGEVKKDPGLLKYPVKPSEAGKSAGQLYEESLGKVVEELKRTNC  170 (370)
T ss_dssp             CHHHHHHHHHTTCC-EEEECSCCTTSEEEETTEEEEHHHHHHCGGGGCCCCCGGGTTCCHHHHHHHHTHHHHHHHHHSCH
T ss_pred             cHHHHHHHHHhCCc-cceeeccCCceEEecCCccccchhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHhhhh
Confidence            665554443 3332 222222 222333333333222100  0000000000     00000   011111111111100


Q ss_pred             CCCcccccccCCCCCHHHHHHhcC-CChhHHHHHhhhhhcccCCCCCCCchHHHHHHHHHHHHhhhcccCCCeEEeecCC
Q 020312          152 NDPKTHEGMDLTRVTTRELIAKYG-LDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYG  230 (328)
Q Consensus       152 ~~~~~~~~~~~~~~s~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~gG  230 (328)
                        ..  .....+..+..+++.... ........+.....   ................     ...  .....+..+.+|
T Consensus       171 --~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~-----~~~--~~~~~~~~~~~~  236 (370)
T d2iida1         171 --SY--ILNKYDTYSTKEYLIKEGDLSPGAVDMIGDLLN---EDSGYYVSFIESLKHD-----DIF--AYEKRFDEIVDG  236 (370)
T ss_dssp             --HH--HHHHHTTSBHHHHHHHTSCCCHHHHHHHHHHTT---CGGGTTSBHHHHHHHH-----HHH--TTCCCEEEETTC
T ss_pred             --hh--hhhhccchhHHHHHHHhccccHHHHHHhhcccc---ccchhhhHHHhhhhhh-----hhh--ccccccccchhh
Confidence              00  000123455666655443 33333333222111   1111111111111110     011  124557788999


Q ss_pred             cCcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEE-EEe---cCceEEcCEEEECCC
Q 020312          231 LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVG-VTS---EGETAKCKKVVCDPS  286 (328)
Q Consensus       231 ~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~-v~~---~g~~~~ad~vV~~~~  286 (328)
                      ++.++++|+   ++.|+++++|++|++|..+ ++++.. +..   ++++++||+||++++
T Consensus       237 ~~~l~~~l~---~~~g~~i~~~~~V~~I~~~-~~~v~v~~~~~~~~~~~~~aD~VI~A~p  292 (370)
T d2iida1         237 MDKLPTAMY---RDIQDKVHFNAQVIKIQQN-DQKVTVVYETLSKETPSVTADYVIVCTT  292 (370)
T ss_dssp             TTHHHHHHH---HHTGGGEESSCEEEEEEEC-SSCEEEEEECSSSCCCEEEESEEEECSC
T ss_pred             HHHHHHHHH---HhcCCccccCceEEEEEEe-CCeEEEEEEecCCCeEEEEeeEEEecCC
Confidence            999999885   5678999999999999998 666543 333   456799999998875

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.76  E-value=9.7e-18  Score=143.31  Aligned_cols=67  Identities=22%  Similarity=0.246  Sum_probs=58.7

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCcccccchHHHHhhhcCCCCCCCccCCCCCeEEecCcceEecCc
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIANG   84 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~   84 (328)
                      .+|+|||||++||+||++|+++|++|+|||+++++||+++|.+.                    .++.+|.|++++...+
T Consensus         2 KkV~IIGaG~aGL~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~--------------------~g~~~d~G~~~~~~~~   61 (373)
T d1seza1           2 KRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAGGKLRSVSQ--------------------DGLIWDEGANTMTESE   61 (373)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTSCEEEEECSSSSSCSSCCEEEE--------------------TTEEEESSCCCBCCCS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCEEEEeCCCCCcCceEEecc--------------------CCEEEecCceEEeCCC
Confidence            37999999999999999999999999999999999999999865                    4689999999998776


Q ss_pred             hHHHHHH
Q 020312           85 ALVRVLI   91 (328)
Q Consensus        85 ~~~~~~~   91 (328)
                      +.+..+.
T Consensus        62 ~~~~~~~   68 (373)
T d1seza1          62 GDVTFLI   68 (373)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            5555444

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=99.75  E-value=8.7e-18  Score=141.05  Aligned_cols=59  Identities=10%  Similarity=0.179  Sum_probs=50.3

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEecCceEEcCEEEECCCCCcchh
Q 020312          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKV  292 (328)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~~g~~~~ad~vV~~~~~~~~~~  292 (328)
                      ..++.+|.+.++++|++++++++|++|+.+ ++++ .|.+++++++||+||++++.+.+++
T Consensus       150 ~~~~~~l~~~a~~~Gv~i~~~~~V~~i~~~-~~~v-~V~t~~g~i~a~~VViAaG~~s~~l  208 (281)
T d2gf3a1         150 ENCIRAYRELAEARGAKVLTHTRVEDFDIS-PDSV-KIETANGSYTADKLIVSMGAWNSKL  208 (281)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEEC-SSCE-EEEETTEEEEEEEEEECCGGGHHHH
T ss_pred             cccccccccccccccccccCCcEEEEEEEE-CCEE-EEEECCcEEEcCEEEECCCCcchhh
Confidence            578999999999999999999999999998 6764 5788777899999998887765443

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=99.74  E-value=1.4e-17  Score=141.49  Aligned_cols=60  Identities=20%  Similarity=0.238  Sum_probs=53.6

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEecCceEEcCEEEECCCCCcchh
Q 020312          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKV  292 (328)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~~g~~~~ad~vV~~~~~~~~~~  292 (328)
                      ..++.++.+.++++|++|+++++|++|+.+ ++++++|+++.++++||+||++++.+.+++
T Consensus       148 ~~l~~~l~~~a~~~gv~i~~~~~V~~i~~~-~~~v~~V~T~~g~i~a~~VV~aaG~~s~~l  207 (305)
T d1pj5a2         148 ARAVQLLIKRTESAGVTYRGSTTVTGIEQS-GGRVTGVQTADGVIPADIVVSCAGFWGAKI  207 (305)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEEE-TTEEEEEEETTEEEECSEEEECCGGGHHHH
T ss_pred             hhhhhhHHhhhhcccccccCCceEEEEEEe-CCEEEEEeccceeEECCEEEEecchhHHHH
Confidence            568899999999999999999999999999 899999999888999999999888765544

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=99.74  E-value=2e-18  Score=144.61  Aligned_cols=59  Identities=15%  Similarity=0.201  Sum_probs=50.3

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEecCceEEcCEEEECCCCCcchh
Q 020312          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKV  292 (328)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~~g~~~~ad~vV~~~~~~~~~~  292 (328)
                      ..+++.|++.++++|++|+.+++|++|..+  +++++|+++.+++.||+||++++.+.+.+
T Consensus       151 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~--~~~~~V~t~~g~i~a~~vV~AaG~~s~~l  209 (276)
T d1ryia1         151 YFVCKAYVKAAKMLGAEIFEHTPVLHVERD--GEALFIKTPSGDVWANHVVVASGVWSGMF  209 (276)
T ss_dssp             HHHHHHHHHHHHHTTCEEETTCCCCEEECS--SSSEEEEETTEEEEEEEEEECCGGGTHHH
T ss_pred             ccchhHHHHHHHHcCCEEecceEEEeEEee--cceEEEecCCeEEEcCEEEECCCccHHHH
Confidence            468899999999999999999999999976  45578888777999999999988766544

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=99.70  E-value=2.2e-17  Score=140.35  Aligned_cols=97  Identities=16%  Similarity=0.271  Sum_probs=73.5

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCcccccchHHHHhhhcCCCCCCCccCCCCCeEEecCcceEecC
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIAN   83 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~   83 (328)
                      +.+|+|||||+|||+||++|+++|++|+|+|+++++||++.|....                 ..+.+..+.|||.++..
T Consensus         2 ~KKI~IIGaG~sGL~aA~~L~k~G~~V~viEk~~~iGG~~~t~~~~-----------------~~g~~~~~~Gphif~t~   64 (314)
T d2bi7a1           2 SKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGGNSYDARDS-----------------ETNVMVHVYGPHIFHTD   64 (314)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSSGGGCEEECT-----------------TTCCEEETTSCCCEEES
T ss_pred             CCEEEEECCcHHHHHHHHHHHhCCCCEEEEECCCCCcCeeeEEEec-----------------CCCceEEecCceeecCc
Confidence            5689999999999999999999999999999999999999887421                 12568889999999887


Q ss_pred             chHHHHHHhcCCCCeeEEEe-eCceeEeeCCeEEEcCCC
Q 020312           84 GALVRVLIHTDVTKYLYFKA-VDGSFVYNKGKVHKVPAT  121 (328)
Q Consensus        84 ~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~g~~~~~~~~  121 (328)
                      .+.+-.+...- .+   +.. ........+|+.++.|..
T Consensus        65 ~~~v~~~~~~~-~~---~~~~~~~~~~~~~g~~~~~P~~   99 (314)
T d2bi7a1          65 NETVWNYVNKH-AE---MMPYVNRVKATVNGQVFSLPIN   99 (314)
T ss_dssp             CHHHHHHHHTT-SC---EEECCCCEEEEETTEEEEESCC
T ss_pred             cHHHHHHHHHh-hh---hhhhccccceeecceeeccCcc
Confidence            66555444432 22   222 233445568888888854

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=99.69  E-value=1.2e-16  Score=131.61  Aligned_cols=55  Identities=20%  Similarity=0.219  Sum_probs=48.0

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe-cCceEEcCEEEECCCC
Q 020312          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSY  287 (328)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~-~g~~~~ad~vV~~~~~  287 (328)
                      ..+.+.|.+.+++.|++|+++++|++|..+ ++.+.+|.+ +++.++||+||++.+-
T Consensus       110 ~~i~~~L~~~~~~~gv~i~~~~~v~~i~~~-~~~~~~v~~~~g~~i~a~~vI~AtGg  165 (251)
T d2i0za1         110 QSVVDALLTRLKDLGVKIRTNTPVETIEYE-NGQTKAVILQTGEVLETNHVVIAVGG  165 (251)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEEE-TTEEEEEEETTCCEEECSCEEECCCC
T ss_pred             HHHHHHHHHHHHHcCCcccCCcEEEEEEEE-CCEEEEEEeCCCCeEecCeEEEccCC
Confidence            568888999999999999999999999998 888887877 8889999998876553

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=99.66  E-value=4.7e-16  Score=128.28  Aligned_cols=43  Identities=21%  Similarity=0.277  Sum_probs=40.3

Q ss_pred             CCCcccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCcc
Q 020312            1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGES   43 (328)
Q Consensus         1 ~~~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~   43 (328)
                      |.+.+||+|||||+|||+||++|+++|++|+||||++.+|+..
T Consensus         1 M~~~~DViIIGaG~aGl~aA~~la~~G~~V~vlEk~~~~G~k~   43 (253)
T d2gqfa1           1 MSQYSENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRKI   43 (253)
T ss_dssp             CEEECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHH
T ss_pred             CCCCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCce
Confidence            7788999999999999999999999999999999999988653

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=99.64  E-value=4.5e-17  Score=136.46  Aligned_cols=59  Identities=25%  Similarity=0.399  Sum_probs=52.8

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCC-eEEEeccCCCCCCcccccchHHHHhhhcCCCCCCCccCCCCCeEEecCcceEecC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGL-KVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIAN   83 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~-~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~   83 (328)
                      .||+|||||++||+||++|+++|. +|+||||++++||++.|...                    .++.+|+|++++...
T Consensus         1 P~V~IIGaG~aGL~aA~~L~~~G~~~V~vlE~~~~~GG~~~t~~~--------------------~g~~~d~G~~~~~~~   60 (347)
T d1b5qa1           1 PRVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGGRMHKTNF--------------------AGINVELGANWVEGV   60 (347)
T ss_dssp             CCEEEECCBHHHHHHHHHHHHTTCCCEEEECSSSSSBTTSCEEEE--------------------TTEEEESSCCEEEEE
T ss_pred             CCEEEECCcHHHHHHHHHHHhCCCCcEEEEECCCCCCceEEEecc--------------------CCEEEecCCeEEecc
Confidence            389999999999999999999995 79999999999999999865                    468899999988643

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=99.61  E-value=5.6e-15  Score=125.30  Aligned_cols=55  Identities=16%  Similarity=0.123  Sum_probs=44.8

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe---cCc--eEEcCEEEECCC
Q 020312          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS---EGE--TAKCKKVVCDPS  286 (328)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~---~g~--~~~ad~vV~~~~  286 (328)
                      ..+.+.+.+.+++.|++++++++|+++..+++|++++|..   +++  .+.||.||++++
T Consensus       145 ~~~~~~l~~~a~~~gv~i~~~~~v~~li~~~~G~V~Gv~~~~~~~~~~~i~Ak~VVlAtG  204 (308)
T d1y0pa2         145 AHVVQVLYDNAVKRNIDLRMNTRGIEVLKDDKGTVKGILVKGMYKGYYWVKADAVILATG  204 (308)
T ss_dssp             HHHHHHHHHHHHHTTCEEESSEEEEEEEECTTSCEEEEEEEETTTEEEEEECSEEEECCC
T ss_pred             HHHHHHHHHHHHhccceEEEeeccchhhhhcccccccccccccccceeEeecCeEEEccC
Confidence            3478888888899999999999999999985789999876   222  588999887654

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=6.1e-16  Score=134.15  Aligned_cols=73  Identities=19%  Similarity=0.338  Sum_probs=61.3

Q ss_pred             CcccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCcccccchHHHHhhhcCCCCCCCccCCCCCeEEecCcceEec
Q 020312            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIA   82 (328)
Q Consensus         3 ~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~   82 (328)
                      ++.+|||||||+|||+||++|+++|++|+|||+++++||+++|.+.                    .++.+|+|++++..
T Consensus         4 ~~~kViVIGaG~aGL~aA~~L~~~G~~V~VlEa~~r~GGr~~t~~~--------------------~g~~~d~G~~~i~~   63 (449)
T d2dw4a2           4 KTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATFRK--------------------GNYVADLGAMVVTG   63 (449)
T ss_dssp             CCCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSSBTTCCEEEE--------------------TTEEEESSCCEECC
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCcccEEEEEe--------------------CCEEEECCCEEECC
Confidence            4678999999999999999999999999999999999999999865                    46899999999974


Q ss_pred             C-c-hHHHHHHhcCC
Q 020312           83 N-G-ALVRVLIHTDV   95 (328)
Q Consensus        83 ~-~-~~~~~~~~~~~   95 (328)
                      . + .+..++.+.++
T Consensus        64 ~~~~~~~~l~~~lgl   78 (449)
T d2dw4a2          64 LGGNPMAVVSKQVNM   78 (449)
T ss_dssp             SBTCHHHHHHHHHTC
T ss_pred             CCCcHHHHHHHHcCC
Confidence            4 3 34444445554

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.56  E-value=5.5e-15  Score=124.58  Aligned_cols=94  Identities=19%  Similarity=0.312  Sum_probs=70.5

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCcccccchHHHHhhhcCCCCCCCccCCCCCeEE-ecCcceEecC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNV-DMIPKFIIAN   83 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~   83 (328)
                      +||||||||+|||+||++|+++|++|+|+|+++++||++.|.+.                    .++.+ +.|||++...
T Consensus         2 ~dv~IIGaG~sGl~~A~~L~~~g~~V~iiEk~~~iGG~~~t~~~--------------------~g~~~~~~G~h~f~t~   61 (298)
T d1i8ta1           2 YDYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIGGNAYTEDC--------------------EGIQIHKYGAHIFHTN   61 (298)
T ss_dssp             EEEEEECCSHHHHHHHHHHGGGTCCEEEECSSSSSSGGGCEEEE--------------------TTEEEETTSCCCEEES
T ss_pred             ccEEEECCcHHHHHHHHHHHhCCCcEEEEECCCCcccceEEeCc--------------------CCEEEeecCcEEEEec
Confidence            69999999999999999999999999999999999999999754                    34544 7799999877


Q ss_pred             chHHHHHHhcCCCCeeEEEeeCceeEeeCCeEEEcCCC
Q 020312           84 GALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPAT  121 (328)
Q Consensus        84 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~  121 (328)
                      .+.+..+........ .+  ........+++...+|..
T Consensus        62 ~~~v~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~P~~   96 (298)
T d1i8ta1          62 DKYIWDYVNDLVEFN-RF--TNSPLAIYKDKLFNLPFN   96 (298)
T ss_dssp             CHHHHHHHHTTSCBC-CC--CCCCEEEETTEEEESSBS
T ss_pred             chHHHHHhhccccce-ee--ccccceeeeceeEEeccc
Confidence            766665554322111 01  122344458888888854

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=99.56  E-value=2.4e-14  Score=122.17  Aligned_cols=55  Identities=24%  Similarity=0.221  Sum_probs=44.9

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe---cCc--eEEcCEEEECCC
Q 020312          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS---EGE--TAKCKKVVCDPS  286 (328)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~---~g~--~~~ad~vV~~~~  286 (328)
                      ..+.+.|.+.+.++|++|+++++|++|..+++|+|++|..   +++  .+.||.||++++
T Consensus       152 ~~~~~~l~~~a~~~gv~i~~~t~v~~li~d~~G~V~Gv~~~~~~~~~~~i~Ak~VIlAtG  211 (322)
T d1d4ca2         152 AHVAQVLWDNAVKRGTDIRLNSRVVRILEDASGKVTGVLVKGEYTGYYVIKADAVVIAAG  211 (322)
T ss_dssp             HHHHHHHHHHHHHTTCEEETTEEEEEEECCSSSCCCEEEEEETTTEEEEEECSEEEECCC
T ss_pred             HHHHHHHHHHHHhcCceEEEeeecccccccccccccceEEEeecccEEEEeCCeEEEcCC
Confidence            4578888888999999999999999999875788888875   222  489999987654

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=99.52  E-value=3.2e-14  Score=121.07  Aligned_cols=55  Identities=20%  Similarity=0.197  Sum_probs=45.3

Q ss_pred             cHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe---cCc--eEEcCEEEECCCC
Q 020312          233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS---EGE--TAKCKKVVCDPSY  287 (328)
Q Consensus       233 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~---~g~--~~~ad~vV~~~~~  287 (328)
                      .+.++|.+.++++|++++++++|+++..++++++++|..   +++  .+.|+.||++++-
T Consensus       149 ~i~~~L~~~~~~~g~~i~~~~~v~~l~~~~~g~V~Gv~~~~~~~~~~~i~Ak~VVlAtGG  208 (317)
T d1qo8a2         149 EIIDTLRKAAKEQGIDTRLNSRVVKLVVNDDHSVVGAVVHGKHTGYYMIGAKSVVLATGG  208 (317)
T ss_dssp             HHHHHHHHHHHHTTCCEECSEEEEEEEECTTSBEEEEEEEETTTEEEEEEEEEEEECCCC
T ss_pred             hhhHHHHHHhhhccceeeeccchhheeecccccceeeEeecccceEEEEeccceEEeccc
Confidence            488999999999999999999999998875889998875   332  4789998876554

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

Probab=99.42  E-value=5.2e-13  Score=115.92  Aligned_cols=33  Identities=15%  Similarity=0.296  Sum_probs=31.9

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEeccC
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRN   36 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~   36 (328)
                      ++||||||||.+|+++|++|+++|++|+|||+.
T Consensus         7 ~~dvIVVGsG~aG~v~A~rLaeaG~~VlvLEaG   39 (370)
T d3coxa1           7 RVPALVIGSGYGGAVAALRLTQAGIPTQIVEMG   39 (370)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCC
Confidence            699999999999999999999999999999995

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=99.38  E-value=1.9e-12  Score=108.41  Aligned_cols=42  Identities=29%  Similarity=0.292  Sum_probs=39.4

Q ss_pred             CCCcccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCc
Q 020312            1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGE   42 (328)
Q Consensus         1 ~~~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~   42 (328)
                      +++++||||||||++||++|++|.++|.+|+|||+++.+||.
T Consensus         4 p~~~~dV~IIGAG~sGl~~a~~L~~~G~~v~i~Ek~~~iGGt   45 (298)
T d1w4xa1           4 PPEEVDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGV   45 (298)
T ss_dssp             CCSEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTH
T ss_pred             CCCCCCEEEECccHHHHHHHHHHHhCCCCEEEEEcCCCcccc
Confidence            356799999999999999999999999999999999999995

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=99.34  E-value=6.5e-12  Score=107.37  Aligned_cols=54  Identities=17%  Similarity=0.144  Sum_probs=44.1

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe----cCc--eEEcCEEEECCC
Q 020312          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS----EGE--TAKCKKVVCDPS  286 (328)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~----~g~--~~~ad~vV~~~~  286 (328)
                      ..+..+|.+.+++.|++|+.+++++++..+ +++++++..    +|+  .+.|+.||++.+
T Consensus       158 ~~i~~~l~~~~~~~gv~i~~~~~~~~li~~-~~~v~g~~~~~~~~g~~~~i~Ak~VvlATG  217 (336)
T d2bs2a2         158 HTMLFAVANECLKLGVSIQDRKEAIALIHQ-DGKCYGAVVRDLVTGDIIAYVAKGTLIATG  217 (336)
T ss_dssp             HHHHHHHHHHHHHHTCEEECSEEEEEEEEE-TTEEEEEEEEETTTCCEEEEECSEEEECCC
T ss_pred             HHHHHHHHHHHHhccccccceeeeeecccc-cccccceeEEeccCCcEEEEecCeEEEecc
Confidence            457888889999999999999999999998 888877654    454  478999887644

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=99.26  E-value=1.6e-11  Score=106.20  Aligned_cols=33  Identities=21%  Similarity=0.386  Sum_probs=31.2

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~   37 (328)
                      .||||||||.+|+++|++|+++|++|+|||+..
T Consensus         3 v~VIVVGsG~aG~v~A~rLaeaG~~VlvLEaG~   35 (367)
T d1n4wa1           3 VPAVVIGTGYGAAVSALRLGEAGVQTLMLEMGQ   35 (367)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             CeEEEeCcCHHHHHHHHHHHHCcCeEEEEecCC
Confidence            599999999999999999999999999999953

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.21  E-value=6.5e-11  Score=101.01  Aligned_cols=43  Identities=16%  Similarity=0.233  Sum_probs=38.6

Q ss_pred             CCCcccEEEECCChhHHHHHHhhhhCC--CeEEEeccCCCCCCcc
Q 020312            1 MDEEYDVIVLGTGLKECILSGLLSVDG--LKVLHMDRNDYYGGES   43 (328)
Q Consensus         1 ~~~~~dvvIvG~G~aGl~aA~~L~~~G--~~V~vlE~~~~~GG~~   43 (328)
                      |+.-.+|+|||||+|||+||.+|++.|  ++|+|+||++.+||..
T Consensus         1 m~~~KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~~iGG~W   45 (335)
T d2gv8a1           1 LPTIRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVW   45 (335)
T ss_dssp             CCSCCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSSSSTTC
T ss_pred             CCCCCeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCCCCCCcc
Confidence            666678999999999999999998876  6999999999999964

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.17  E-value=2.9e-12  Score=103.65  Aligned_cols=46  Identities=15%  Similarity=0.334  Sum_probs=42.6

Q ss_pred             CCCcccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCccccc
Q 020312            1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSL   46 (328)
Q Consensus         1 ~~~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~s~   46 (328)
                      |.++|||+|||||++|++||.+|++.|.+|+|+|+++.+||.+...
T Consensus         2 m~~~yDviVIG~GpAGl~aA~~aa~~G~kV~lie~~~~~GG~~~~~   47 (233)
T d1v59a1           2 INKSHDVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKLGGTCLNV   47 (233)
T ss_dssp             EEEEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHHH
T ss_pred             CCcccCEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCcceEeEEe
Confidence            6788999999999999999999999999999999999999976543

>d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Escherichia coli [TaxId: 562]

Probab=99.17  E-value=2.9e-11  Score=102.04  Aligned_cols=40  Identities=10%  Similarity=0.067  Sum_probs=36.2

Q ss_pred             cccEEEECCChhHHHHHHhhhhC--CCeEEEeccCCCCCCcc
Q 020312            4 EYDVIVLGTGLKECILSGLLSVD--GLKVLHMDRNDYYGGES   43 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~--G~~V~vlE~~~~~GG~~   43 (328)
                      ++||+|||||+|||+||.+++++  |.+|+|+||....||.+
T Consensus         5 ~~DVlVIG~G~AGl~AA~~a~~~~~g~~V~lleK~~~~~g~s   46 (311)
T d1kf6a2           5 QADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMRSHT   46 (311)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHCTTCCEEEEESSCGGGSGG
T ss_pred             ecCEEEECccHHHHHHHHHHHHhCCCCEEEEEECCCCCCCcH
Confidence            69999999999999999999986  67899999998877764

>d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Hydroxynitrile lyase
species: Almond (Prunus dulcis) [TaxId: 3755]

Probab=99.16  E-value=2.5e-11  Score=104.25  Aligned_cols=35  Identities=34%  Similarity=0.635  Sum_probs=32.0

Q ss_pred             CcccEEEECCChhHHHHHHhhhhCCCeEEEeccCCC
Q 020312            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (328)
Q Consensus         3 ~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~   38 (328)
                      .+||+||||||.+|+.+|.+|+++ ++|+|||+.+.
T Consensus        25 ~~YD~IIVGsG~aG~vlA~rLae~-~kVLvLEaG~~   59 (351)
T d1ju2a1          25 GSYDYVIVGGGTSGCPLAATLSEK-YKVLVLERGSL   59 (351)
T ss_dssp             EEEEEEEECCSTTHHHHHHHHTTT-SCEEEECSSBC
T ss_pred             CCccEEEECccHHHHHHHHHhcCC-CCEEEEecCCC
Confidence            469999999999999999999987 99999999754

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=99.15  E-value=1.4e-11  Score=94.32  Aligned_cols=42  Identities=19%  Similarity=0.286  Sum_probs=39.2

Q ss_pred             CcccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCccc
Q 020312            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (328)
Q Consensus         3 ~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~   44 (328)
                      ...+|+|||||++||+||+.|+++|++|+|+|+.+.+||...
T Consensus        42 ~~k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~~~~~GG~l~   83 (179)
T d1ps9a3          42 QKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQFN   83 (179)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSCTTHH
T ss_pred             CCcEEEEECccHHHHHHHHHHHhhccceEEEeccCccCceEE
Confidence            357999999999999999999999999999999999999754

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

Probab=99.15  E-value=1.1e-10  Score=99.27  Aligned_cols=41  Identities=17%  Similarity=0.194  Sum_probs=38.0

Q ss_pred             CcccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCcc
Q 020312            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGES   43 (328)
Q Consensus         3 ~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~   43 (328)
                      +++||+|||||++||+||.+++++|.+|+|+||.+..||.+
T Consensus         6 ~~~DVlVVG~G~AGl~AAl~aa~~G~~V~lleK~~~~gg~s   46 (330)
T d1neka2           6 REFDAVVIGAGGAGMRAALQISQSGQTCALLSKVFPTRSHT   46 (330)
T ss_dssp             EEESCEEECCSHHHHHHHHHHHHTTCCCEEECSSCGGGSGG
T ss_pred             ccCCEEEECcCHHHHHHHHHHHHcCCeEEEEeCCCCCCCcH
Confidence            36999999999999999999999999999999999888754

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.10  E-value=2e-11  Score=105.72  Aligned_cols=43  Identities=26%  Similarity=0.367  Sum_probs=38.6

Q ss_pred             CcccEEEECCChhHHHHHHhhhh------CCCeEEEeccCCCCCCcccc
Q 020312            3 EEYDVIVLGTGLKECILSGLLSV------DGLKVLHMDRNDYYGGESSS   45 (328)
Q Consensus         3 ~~~dvvIvG~G~aGl~aA~~L~~------~G~~V~vlE~~~~~GG~~~s   45 (328)
                      .+|||||||||+|||+||++|+|      +|++|+||||+..+|....+
T Consensus        31 ~e~DViIVGgGPAGlsaA~~LA~l~~~~~~Gl~VlllEK~~~pG~k~~~   79 (380)
T d2gmha1          31 EEADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGAHTLS   79 (380)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSSTTTTCCC
T ss_pred             ccCCEEEECCCHHHHHHHHHHHhhhhhhcCCCEEEEEcCCCCCCCCccc
Confidence            36999999999999999999998      89999999999999766543

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=99.10  E-value=3.6e-11  Score=98.71  Aligned_cols=42  Identities=24%  Similarity=0.256  Sum_probs=36.4

Q ss_pred             CCCcccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCc
Q 020312            1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGE   42 (328)
Q Consensus         1 ~~~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~   42 (328)
                      |..+.||||||||++||+||++|+++|++|+|+||+...+|.
T Consensus         3 ~~~~~kVvVIGaGiaGl~~A~~L~~~G~~V~vier~~~~~~~   44 (268)
T d1c0pa1           3 MHSQKRVVVLGSGVIGLSSALILARKGYSVHILARDLPEDVS   44 (268)
T ss_dssp             CCCSCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCTTCTT
T ss_pred             CCCCCcEEEECccHHHHHHHHHHHHCCCCEEEEeCCCCCCCc
Confidence            344689999999999999999999999999999997754443

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=99.08  E-value=3.3e-11  Score=100.09  Aligned_cols=43  Identities=23%  Similarity=0.254  Sum_probs=39.5

Q ss_pred             CcccEEEECCChhHHHHHHhhhh-CCCeEEEeccCCCCCCcccc
Q 020312            3 EEYDVIVLGTGLKECILSGLLSV-DGLKVLHMDRNDYYGGESSS   45 (328)
Q Consensus         3 ~~~dvvIvG~G~aGl~aA~~L~~-~G~~V~vlE~~~~~GG~~~s   45 (328)
                      .++||+|||||++||+||++|++ .|++|+|||+++.+||.+.+
T Consensus        32 ~e~DViVIGaGpaGL~aA~~LA~~~G~~V~vlE~~~~~GG~~~~   75 (278)
T d1rp0a1          32 AETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGAWL   75 (278)
T ss_dssp             TEEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSCCTTTTC
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHccCCeEEEEecCCCCCCceee
Confidence            36899999999999999999987 59999999999999997765

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.08  E-value=3e-11  Score=96.75  Aligned_cols=44  Identities=20%  Similarity=0.375  Sum_probs=41.0

Q ss_pred             CcccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCccccc
Q 020312            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSL   46 (328)
Q Consensus         3 ~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~s~   46 (328)
                      ++|||+|||||++||+||.++++.|.+|+|+|+++.+||.+...
T Consensus         2 ~~yDvvVIGgGpaGl~aA~~aa~~G~kV~vie~~~~~GG~~~~~   45 (221)
T d1dxla1           2 DENDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGALGGTCLNV   45 (221)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSCCSHHHH
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCCeeecc
Confidence            67999999999999999999999999999999999999977544

>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

Probab=99.02  E-value=9.6e-11  Score=100.89  Aligned_cols=33  Identities=39%  Similarity=0.585  Sum_probs=31.9

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEeccC
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRN   36 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~   36 (328)
                      +||+||||||.+|+.+|.+|+++|++|+|||+.
T Consensus         2 ~YD~IIVGsG~aG~v~A~rLae~g~~VlvLEaG   34 (360)
T d1kdga1           2 PYDYIIVGAGPGGIIAADRLSEAGKKVLLLERG   34 (360)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             cCCEEEECcCHHHHHHHHHHhhCCCeEEEEEcc
Confidence            699999999999999999999999999999995

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=99.02  E-value=5.3e-11  Score=95.86  Aligned_cols=42  Identities=36%  Similarity=0.469  Sum_probs=39.2

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCcccc
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSS   45 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~s   45 (328)
                      +|||+|||||++||+||.+|+++|++|+|+|+.+.+||.+.+
T Consensus         6 dyDviIIG~GPaGlsaA~~aa~~G~~V~viE~~~~~GG~~~~   47 (229)
T d1ojta1           6 EYDVVVLGGGPGGYSAAFAAADEGLKVAIVERYKTLGGVCLN   47 (229)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSCSSHHHHH
T ss_pred             ccCEEEECcCHHHHHHHHHHHHCCCeEEEEeccCCCCCeeec
Confidence            699999999999999999999999999999999999996543

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=98.99  E-value=1.3e-10  Score=100.44  Aligned_cols=41  Identities=34%  Similarity=0.567  Sum_probs=37.7

Q ss_pred             CCCcccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCC
Q 020312            1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG   41 (328)
Q Consensus         1 ~~~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG   41 (328)
                      |+.+|||||||||.+|+++|.+|+++|++|+|||+....++
T Consensus         1 md~~yDviIVGsG~aG~v~A~~La~~G~kVlvLEaG~~~~~   41 (379)
T d2f5va1           1 MDIKYDVVIVGSGPIGCTYARELVGAGYKVAMFDIGEIDSG   41 (379)
T ss_dssp             CCSEEEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCSS
T ss_pred             CCCcccEEEECcCHHHHHHHHHHhhCCCeEEEEecCCCCCC
Confidence            88899999999999999999999999999999999765544

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=98.99  E-value=1.4e-10  Score=93.13  Aligned_cols=42  Identities=24%  Similarity=0.366  Sum_probs=37.8

Q ss_pred             CCcccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCcc
Q 020312            2 DEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGES   43 (328)
Q Consensus         2 ~~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~   43 (328)
                      .++|||+|||||++||+||.+|+++|++|+|+|+....++..
T Consensus         1 ~~kYDviIIGgGpAGl~aA~~aar~G~~V~viE~~~~~~~~~   42 (229)
T d3lada1           1 SQKFDVIVIGAGPGGYVAAIKSAQLGLKTALIEKYKGKEGKT   42 (229)
T ss_dssp             CCCCSEEEECCSHHHHHHHHHHHHHTCCEEEEECCBCTTSSB
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHHCCCeEEEEecccCCCccc
Confidence            368999999999999999999999999999999987666643

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=98.98  E-value=8.9e-11  Score=93.67  Aligned_cols=41  Identities=22%  Similarity=0.319  Sum_probs=37.2

Q ss_pred             CcccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCccc
Q 020312            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (328)
Q Consensus         3 ~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~   44 (328)
                      ++|||+|||||.+|++||.+|++.|.+|+|+|++ .+||.|.
T Consensus         1 k~yDvvVIG~G~aG~~aA~~a~~~G~kV~iiE~~-~~GGtc~   41 (217)
T d1gesa1           1 KHYDYIAIGGGSGGIASINRAAMYGQKCALIEAK-ELGGTCV   41 (217)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTTTCCEEEEESS-CTTHHHH
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCEEEEEecc-CcCCeEe
Confidence            5799999999999999999999999999999995 5788653

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.98  E-value=8.2e-11  Score=95.21  Aligned_cols=41  Identities=15%  Similarity=0.143  Sum_probs=37.5

Q ss_pred             cccEEEECCChhHHHHHHhhhhCC-------CeEEEeccCCCCCCccc
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDG-------LKVLHMDRNDYYGGESS   44 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G-------~~V~vlE~~~~~GG~~~   44 (328)
                      +++|+|||||+|||+||++|+++|       ++|+|+|+.+.+||..+
T Consensus         2 p~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~~GG~~~   49 (239)
T d1lqta2           2 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLVR   49 (239)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCSTHHH
T ss_pred             CcEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCCCCCCeee
Confidence            479999999999999999999998       47999999999999653

>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Aspergillus niger [TaxId: 5061]

Probab=98.97  E-value=1.4e-09  Score=94.34  Aligned_cols=34  Identities=24%  Similarity=0.375  Sum_probs=31.5

Q ss_pred             cccEEEECCChhHHHHHHhhhhCC-CeEEEeccCC
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDG-LKVLHMDRND   37 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G-~~V~vlE~~~   37 (328)
                      +||+||||||.+|+..|.+|+++| ++|+|||+..
T Consensus        17 tyD~IIVGsG~aG~vlA~rLse~~~~~VLvLEaG~   51 (385)
T d1cf3a1          17 TVDYIIAGGGLTGLTTAARLTENPNISVLVIESGS   51 (385)
T ss_dssp             EEEEEEECCSHHHHHHHHHHTTSTTCCEEEEESSC
T ss_pred             eEEEEEECcCHHHHHHHHHHHHCCCCeEEEECCCC
Confidence            599999999999999999999986 8999999954

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=98.92  E-value=8e-09  Score=73.22  Aligned_cols=45  Identities=11%  Similarity=0.131  Sum_probs=35.5

Q ss_pred             HHHHcCcEEEcCcceeEEEecCCCcEEEEEe-cCceEEcCEEEECCC
Q 020312          241 LSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPS  286 (328)
Q Consensus       241 ~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~-~g~~~~ad~vV~~~~  286 (328)
                      .++++|+++++++.|++|..++++.+ .++. +|+++.+|.||++.+
T Consensus        71 ~l~~~GV~~~~~~~v~~i~~~~~~~~-~v~~~~g~~~~~D~vi~a~G  116 (116)
T d1gesa2          71 VMNAEGPQLHTNAIPKAVVKNTDGSL-TLELEDGRSETVDCLIWAIG  116 (116)
T ss_dssp             HHHHHSCEEECSCCEEEEEECTTSCE-EEEETTSCEEEESEEEECSC
T ss_pred             HHHHCCCEEEeCCEEEEEEEcCCcEE-EEEECCCCEEEcCEEEEecC
Confidence            35668999999999999998734444 4665 788999999998753

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=98.91  E-value=2.1e-08  Score=72.76  Aligned_cols=45  Identities=18%  Similarity=0.226  Sum_probs=37.0

Q ss_pred             HHHcCcEEEcCcceeEEEecC-CCcEEEEEe-cCceEEcCEEEECCC
Q 020312          242 SAVYGGTYMLNKPECKVEFDE-EGKVVGVTS-EGETAKCKKVVCDPS  286 (328)
Q Consensus       242 ~~~~G~~i~~~~~V~~I~~~~-~~~v~~v~~-~g~~~~ad~vV~~~~  286 (328)
                      ++++|+++++|+.|++|+... ++.+..+.+ +|+++.||.||++.+
T Consensus        87 ~~~~GV~i~~~~~v~~i~~~~~~~~v~~v~~~~G~~i~~D~vi~a~G  133 (133)
T d1q1ra2          87 HREAGVDIRTGTQVCGFEMSTDQQKVTAVLCEDGTRLPADLVIAGIG  133 (133)
T ss_dssp             HHHHTCEEECSCCEEEEEECTTTCCEEEEEETTSCEEECSEEEECCC
T ss_pred             ccccccEEEeCCeEEEEEEeCCCceEEEEECCCCCEEECCEEEEeeC
Confidence            567899999999999998752 556777777 788999999998753

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.90  E-value=5e-10  Score=87.59  Aligned_cols=41  Identities=22%  Similarity=0.440  Sum_probs=37.5

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCC-eEEEeccCCCCCCccc
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGL-KVLHMDRNDYYGGESS   44 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~-~V~vlE~~~~~GG~~~   44 (328)
                      ..+|+|||||++||+||.+|+++|+ +|+|+||++.+||..+
T Consensus         4 ~~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~~~gg~~~   45 (196)
T d1gtea4           4 SAKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLST   45 (196)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSCSTHHH
T ss_pred             CCEEEEECChHHHHHHHHHHHHCCCCeEEEEEecCcccchhh
Confidence            4689999999999999999999998 5999999999999643

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=98.89  E-value=6.6e-10  Score=91.09  Aligned_cols=39  Identities=15%  Similarity=0.112  Sum_probs=35.6

Q ss_pred             CCcccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCC
Q 020312            2 DEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYG   40 (328)
Q Consensus         2 ~~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~G   40 (328)
                      |.+.+|+|||||++||+||..|+++|++|+||||++.++
T Consensus         2 ~~~~kV~IiGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~   40 (265)
T d2voua1           2 PTTDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQPL   40 (265)
T ss_dssp             CCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSC
T ss_pred             CCCCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCC
Confidence            456799999999999999999999999999999987654

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=98.88  E-value=7.5e-10  Score=89.16  Aligned_cols=43  Identities=21%  Similarity=0.338  Sum_probs=39.6

Q ss_pred             CcccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCcccc
Q 020312            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSS   45 (328)
Q Consensus         3 ~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~s   45 (328)
                      ...+|+|||||++||+||.+|+++|++|+|+|+++.+||....
T Consensus        48 ~~k~VvIIGaGpAGl~aA~~l~~~G~~v~l~E~~~~~GG~~~~   90 (233)
T d1djqa3          48 NKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIGGHLNQ   90 (233)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTHHH
T ss_pred             CCceEEEEcccHHHHHHHHHHHHhccceeeEeeccccCCcccc
Confidence            3579999999999999999999999999999999999997644

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.88  E-value=5.4e-10  Score=89.86  Aligned_cols=40  Identities=15%  Similarity=0.027  Sum_probs=36.4

Q ss_pred             ccEEEECCChhHHHHHHhhhhC--CCeEEEeccCCCCCCccc
Q 020312            5 YDVIVLGTGLKECILSGLLSVD--GLKVLHMDRNDYYGGESS   44 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~--G~~V~vlE~~~~~GG~~~   44 (328)
                      .+|+|||||+|||+||.+|+++  |++|+|+|+.+.+||..+
T Consensus         2 ~kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~~gG~~~   43 (230)
T d1cjca2           2 PQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLVR   43 (230)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSCTHHH
T ss_pred             CeEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCceeh
Confidence            4899999999999999999876  789999999999999654

>d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: L-aspartate oxidase
species: Escherichia coli [TaxId: 562]

Probab=98.87  E-value=5.8e-10  Score=93.67  Aligned_cols=40  Identities=20%  Similarity=0.351  Sum_probs=34.9

Q ss_pred             CcccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCcc
Q 020312            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGES   43 (328)
Q Consensus         3 ~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~   43 (328)
                      +++||||||+|++||+||+.+++.| +|+||||.+..||.+
T Consensus         6 ~~~DVvVVG~G~AGl~AA~~a~~~g-~V~llEK~~~~gG~s   45 (305)
T d1chua2           6 HSCDVLIIGSGAAGLSLALRLADQH-QVIVLSKGPVTEGST   45 (305)
T ss_dssp             EECSEEEECCSHHHHHHHHHHTTTS-CEEEECSSCTTC---
T ss_pred             ccCCEEEECccHHHHHHHHHhhcCC-CEEEEECCCCCCCch
Confidence            3699999999999999999999988 999999999888764

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.86  E-value=9e-10  Score=88.77  Aligned_cols=39  Identities=18%  Similarity=0.117  Sum_probs=35.6

Q ss_pred             CcccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCC
Q 020312            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG   41 (328)
Q Consensus         3 ~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG   41 (328)
                      -+|||+|||||++|++||.++++.|++|+|+|+....|.
T Consensus         2 ~dYDviVIG~GpaGl~aA~~aa~~G~kV~viE~~~~~~~   40 (235)
T d1h6va1           2 YDFDLIIIGGGSGGLAAAKEAAKFDKKVMVLDFVTPTPL   40 (235)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHGGGCCCEEEECCCCCCTT
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCc
Confidence            479999999999999999999999999999999776554

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.85  E-value=7.5e-10  Score=93.23  Aligned_cols=43  Identities=26%  Similarity=0.254  Sum_probs=39.3

Q ss_pred             cccEEEECCChhHHHHHHhhhhC--CCeEEEeccCCCCCCccccc
Q 020312            4 EYDVIVLGTGLKECILSGLLSVD--GLKVLHMDRNDYYGGESSSL   46 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~--G~~V~vlE~~~~~GG~~~s~   46 (328)
                      ++||+|||||++||+||++|+++  |++|+|+|+++.+||.++..
T Consensus        50 ~~~~~~~g~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~g   94 (311)
T d2gjca1          50 VSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWLG   94 (311)
T ss_dssp             EESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTTTTCC
T ss_pred             CCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEEcCCCCcceeEec
Confidence            58999999999999999999964  99999999999999987654

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=98.82  E-value=1.1e-09  Score=84.61  Aligned_cols=39  Identities=23%  Similarity=0.466  Sum_probs=35.2

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCccc
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~   44 (328)
                      .|||+|||||.+|++||.++++.|.+|+|+|++  +||.+.
T Consensus         1 ~yDViIIGgGpaGl~AAi~aar~G~~v~iie~~--~gg~~~   39 (184)
T d1fl2a1           1 AYDVLIVGSGPAGAAAAIYSARKGIRTGLMGER--FGGQIL   39 (184)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTTTCCEEEECSS--TTGGGG
T ss_pred             CCcEEEECcCHHHHHHHHHHHHcCCeEEEEEEe--cCCccc
Confidence            389999999999999999999999999999974  677654

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.79  E-value=2.1e-09  Score=88.91  Aligned_cols=39  Identities=18%  Similarity=0.253  Sum_probs=35.1

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCC-eEEEeccCCCCCCc
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGL-KVLHMDRNDYYGGE   42 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~-~V~vlE~~~~~GG~   42 (328)
                      ++||+|||||++||++|+.|+++|. +|+|+||++.++..
T Consensus         1 ~~~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~~~~~~~   40 (288)
T d3c96a1           1 PIDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRPL   40 (288)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSSCCCC
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCCeEEEEeCCCCCCCC
Confidence            4799999999999999999999995 99999999877644

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=98.79  E-value=1.8e-09  Score=88.48  Aligned_cols=43  Identities=33%  Similarity=0.477  Sum_probs=40.2

Q ss_pred             CCcccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCccc
Q 020312            2 DEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (328)
Q Consensus         2 ~~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~   44 (328)
                      +++||++|||||.+|+.||..|++.|.+|+|+|+.+.+||.|-
T Consensus        40 ~k~yDvvVIGgG~aG~~aA~~~a~~G~kv~vve~~~~lGG~c~   82 (261)
T d1mo9a1          40 PREYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFLGGSCP   82 (261)
T ss_dssp             CSCBSEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSCHHH
T ss_pred             CccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCccccccc
Confidence            3579999999999999999999999999999999999999764

>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Adenylylsulfate reductase A subunit
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.75  E-value=3.2e-09  Score=90.96  Aligned_cols=41  Identities=22%  Similarity=0.374  Sum_probs=36.5

Q ss_pred             cccEEEECCChhHHHHHHhhhh----CCCeEEEeccCCCCCCccc
Q 020312            4 EYDVIVLGTGLKECILSGLLSV----DGLKVLHMDRNDYYGGESS   44 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~----~G~~V~vlE~~~~~GG~~~   44 (328)
                      ++||+|||||++||+||++|++    +|.+|+||||....||.+.
T Consensus        21 e~DVlIIG~G~AGl~AA~~aa~~~~~~G~~V~vieK~~~~gg~s~   65 (356)
T d1jnra2          21 ETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAVERSGAV   65 (356)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSSCTTTCSTT
T ss_pred             ecCEEEECCCHHHHHHHHHHHHHHHhCcCEEEEEeCCCCCCChhH
Confidence            5899999999999999999975    7999999999988877653

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.75  E-value=1.9e-09  Score=88.15  Aligned_cols=40  Identities=25%  Similarity=0.400  Sum_probs=36.3

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCcccc
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSS   45 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~s   45 (328)
                      ||++|||||.+|++||.++++.|.+|+|+|+. .+||.|-.
T Consensus         2 yDviVIG~G~aG~~aA~~aa~~G~~V~liE~~-~~GGtc~n   41 (259)
T d1onfa1           2 YDLIVIGGGSGGMAAARRAARHNAKVALVEKS-RLGGTCVN   41 (259)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-STTHHHHH
T ss_pred             ceEEEECCCHHHHHHHHHHHHCCCeEEEEecC-CCCCeEEe
Confidence            89999999999999999999999999999985 57887643

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=98.74  E-value=1.7e-09  Score=86.28  Aligned_cols=41  Identities=12%  Similarity=0.247  Sum_probs=36.7

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCcccc
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSS   45 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~s   45 (328)
                      ++|++|||||++|++||.++++.|.+|+|+|++ .+||.|-.
T Consensus         5 ~~DlvVIG~GpaGl~aA~~aa~~G~~V~liE~~-~~GG~c~~   45 (220)
T d1lvla1           5 QTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQ-ALGGTCLN   45 (220)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHTCCEEEECSS-CTTHHHHH
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCCcEEEEecC-CCCCcccc
Confidence            699999999999999999999999999999986 56776543

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=98.74  E-value=2.1e-09  Score=83.61  Aligned_cols=44  Identities=11%  Similarity=0.169  Sum_probs=37.7

Q ss_pred             CcccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCccccc
Q 020312            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSL   46 (328)
Q Consensus         3 ~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~s~   46 (328)
                      +..||+|||||++||+||.+|++.|.+|+|+|+.+..|....+.
T Consensus         4 k~~dVvIIGGGpaGl~AA~~~ar~g~~v~iie~~~~~g~~~~~~   47 (190)
T d1trba1           4 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTT   47 (190)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHTTTCCCEEECCSSTTGGGGGCS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEEeecccccccccc
Confidence            35799999999999999999999999999999877755554443

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.73  E-value=2.8e-09  Score=84.97  Aligned_cols=40  Identities=23%  Similarity=0.323  Sum_probs=35.8

Q ss_pred             CcccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCcc
Q 020312            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGES   43 (328)
Q Consensus         3 ~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~   43 (328)
                      .+|||+|||||++|++||.++++.|.+|+|+|+.. +||.+
T Consensus         2 ~~~DviVIG~GpaGl~aA~~aar~G~kV~vIEk~~-~GG~~   41 (223)
T d1ebda1           2 IETETLVVGAGPGGYVAAIRAAQLGQKVTIVEKGN-LGGVC   41 (223)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHTTCCEEEEESSC-TTHHH
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHCCCEEEEEecCC-CCcce
Confidence            37999999999999999999999999999999965 56654

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.72  E-value=3.3e-09  Score=84.46  Aligned_cols=40  Identities=20%  Similarity=0.315  Sum_probs=35.4

Q ss_pred             CcccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCcc
Q 020312            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGES   43 (328)
Q Consensus         3 ~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~   43 (328)
                      .+||+||||||++|++||.++++.|.+|+|+|+. ..||.+
T Consensus         2 ~~yDviIIG~GpaG~~aA~~aar~G~kV~vIEk~-~~GG~c   41 (221)
T d3grsa1           2 ASYDYLVIGGGSGGLASARRAAELGARAAVVESH-KLGGTC   41 (221)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTHHH
T ss_pred             CccCEEEECCCHHHHHHHHHHHHCCCEEEEEecc-CCCCcc
Confidence            3799999999999999999999999999999985 455543

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.68  E-value=4.7e-09  Score=87.28  Aligned_cols=35  Identities=23%  Similarity=0.431  Sum_probs=32.7

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEeccCCC
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~   38 (328)
                      ++||+|||||++||++|..|+++|++|+||||++.
T Consensus         2 k~~V~IvGaGp~Gl~~A~~L~~~G~~v~vlE~~~~   36 (292)
T d1k0ia1           2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQTP   36 (292)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCH
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            46999999999999999999999999999999763

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GidA-like
domain: GidA-related protein TTHA1897
species: Thermus thermophilus [TaxId: 274]

Probab=98.68  E-value=6.8e-09  Score=81.88  Aligned_cols=39  Identities=21%  Similarity=0.326  Sum_probs=34.8

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEeccC-CCCCCc
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRN-DYYGGE   42 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~-~~~GG~   42 (328)
                      .|||||||||+||++||+++++.|.+|+|+|++ +.+|+.
T Consensus         2 ~YDVIVIGgG~AG~eAA~~aAR~G~ktllit~~~~~ig~~   41 (230)
T d2cula1           2 AYQVLIVGAGFSGAETAFWLAQKGVRVGLLTQSLDAVMMP   41 (230)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCC
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCCCcEEEEEeccchhccc
Confidence            599999999999999999999999999999997 445443

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=98.67  E-value=4.8e-09  Score=89.67  Aligned_cols=37  Identities=27%  Similarity=0.345  Sum_probs=33.4

Q ss_pred             cccEEEECCChhHHHHHHhhh-----hCCCeEEEeccCCCCC
Q 020312            4 EYDVIVLGTGLKECILSGLLS-----VDGLKVLHMDRNDYYG   40 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~-----~~G~~V~vlE~~~~~G   40 (328)
                      .|||+|||||++||++|..|+     ++|++|+||||++.+.
T Consensus         7 ~yDV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~~~~~   48 (360)
T d1pn0a1           7 YCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTKV   48 (360)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSSCC
T ss_pred             CCCEEEECcCHHHHHHHHHHHhcccccCCCcEEEEcCCCCCC
Confidence            599999999999999999996     5799999999987653

>d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=98.62  E-value=6.2e-09  Score=83.99  Aligned_cols=37  Identities=19%  Similarity=0.187  Sum_probs=33.4

Q ss_pred             CCcccEEEECCChhHHHHHHhhhhCCC-eEEEeccCCC
Q 020312            2 DEEYDVIVLGTGLKECILSGLLSVDGL-KVLHMDRNDY   38 (328)
Q Consensus         2 ~~~~dvvIvG~G~aGl~aA~~L~~~G~-~V~vlE~~~~   38 (328)
                      .++|||||||||+||++||.++++.|. +|+|+|+...
T Consensus         1 ~k~YDvvVIG~GpAG~~aAi~aa~~g~k~V~vie~~~~   38 (240)
T d1feca1           1 SRAYDLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQKH   38 (240)
T ss_dssp             CCSEEEEEECCSHHHHHHHHHHHHHHCCCEEEEESCSS
T ss_pred             CCccCEEEECCCHHHHHHHHHHHHcCCCEEEEEEEecc
Confidence            368999999999999999999999985 6999999775

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.61  E-value=9.6e-09  Score=79.90  Aligned_cols=36  Identities=14%  Similarity=0.069  Sum_probs=33.5

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCC
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY   39 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~   39 (328)
                      ++||+|||||.+||+||.+|+++|.+|+|+|+....
T Consensus         5 ~~~VvIIGgGpaGl~aA~~~ar~g~~v~vie~~~~~   40 (192)
T d1vdca1           5 NTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMAN   40 (192)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBT
T ss_pred             cceEEEECCCHHHHHHHHHHHHcCCcEEEEEeeccc
Confidence            589999999999999999999999999999987654

>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=98.59  E-value=1.3e-08  Score=81.68  Aligned_cols=36  Identities=17%  Similarity=0.132  Sum_probs=31.9

Q ss_pred             CCcccEEEECCChhHHHHHHhhhhCCC-eEEEeccCC
Q 020312            2 DEEYDVIVLGTGLKECILSGLLSVDGL-KVLHMDRND   37 (328)
Q Consensus         2 ~~~~dvvIvG~G~aGl~aA~~L~~~G~-~V~vlE~~~   37 (328)
                      .+.||++|||||++|++||.++++.|. +|+|+|+..
T Consensus         1 ~~~YDviIIG~GpaGl~aA~~aa~~g~k~V~iie~~~   37 (238)
T d1aoga1           1 SKIFDLVVIGAGSGGLEAAWNAATLYKKRVAVIDVQM   37 (238)
T ss_dssp             CCSBSEEEECCSHHHHHHHHHHHHTSCCCEEEEESCS
T ss_pred             CCccCEEEECCCHHHHHHHHHHHHcCCCEEEEEEeec
Confidence            367999999999999999999999885 689999854

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.48  E-value=4.7e-09  Score=84.75  Aligned_cols=34  Identities=18%  Similarity=0.092  Sum_probs=30.4

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~   38 (328)
                      ++|+|||||++||++|++|+++|++|+|+|+...
T Consensus         1 mkV~VIGaGi~GlstA~~L~~~G~~v~v~e~~~i   34 (246)
T d1kifa1           1 MRVVVIGAGVIGLSTALCIHERYHSVLQPLDVKV   34 (246)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHTTTSSSCEEEE
T ss_pred             CEEEEECchHHHHHHHHHHHHCCCCceEEeeeee
Confidence            4699999999999999999999999888888543

>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]

Probab=98.47  E-value=4e-08  Score=85.06  Aligned_cols=36  Identities=31%  Similarity=0.558  Sum_probs=32.9

Q ss_pred             CcccEEEECCChhHHHHHHhhhhCC-CeEEEeccCCC
Q 020312            3 EEYDVIVLGTGLKECILSGLLSVDG-LKVLHMDRNDY   38 (328)
Q Consensus         3 ~~~dvvIvG~G~aGl~aA~~L~~~G-~~V~vlE~~~~   38 (328)
                      ++||+||||||.+|+..|.+|+++| ++|+|||+...
T Consensus        23 ~tyD~IIVGsG~aG~vlA~rLae~~~~~VLlLEaG~~   59 (391)
T d1gpea1          23 KTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFY   59 (391)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTSTTCCEEEEESSCC
T ss_pred             CeeeEEEECcCHHHHHHHHHHHHCCCCeEEEEcCCCC
Confidence            3699999999999999999999998 79999999643

>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.25  E-value=1.5e-07  Score=75.22  Aligned_cols=39  Identities=21%  Similarity=0.270  Sum_probs=32.6

Q ss_pred             ccEEEECCChhHHHHHHhhhhCC---CeEEEeccCCCCCCccc
Q 020312            5 YDVIVLGTGLKECILSGLLSVDG---LKVLHMDRNDYYGGESS   44 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G---~~V~vlE~~~~~GG~~~   44 (328)
                      .+|+|||||++|++||.++++.|   .+|+|+|+ +.+||.|-
T Consensus         2 ~~viVIG~GpaG~~aA~~aa~~~~~~~~V~liEk-~~~GG~cl   43 (233)
T d1xdia1           2 TRIVILGGGPAGYEAALVAATSHPETTQVTVIDC-DGIGGAAV   43 (233)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEES-SCTTHHHH
T ss_pred             cEEEEECCCHHHHHHHHHHHHcCCCCCEEEEEec-CCCCceee
Confidence            48999999999999999887655   68999998 55777543

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.24  E-value=5.8e-07  Score=63.42  Aligned_cols=37  Identities=19%  Similarity=0.152  Sum_probs=34.5

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG   41 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG   41 (328)
                      -+++|||||..|+-+|..|++.|.+|+|+|+++++..
T Consensus        23 ~~v~IiGgG~ig~E~A~~l~~~G~~Vtlve~~~~il~   59 (117)
T d1ebda2          23 KSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEILS   59 (117)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSST
T ss_pred             CeEEEECCCccceeeeeeecccccEEEEEEecceecc
Confidence            5899999999999999999999999999999988753

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=98.23  E-value=7.8e-07  Score=63.03  Aligned_cols=39  Identities=13%  Similarity=0.227  Sum_probs=35.5

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCc
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGE   42 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~   42 (328)
                      ..+++|||||..|+-+|..|+++|.+|+|+|+++++-.+
T Consensus        30 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~~l~~   68 (121)
T d1d7ya2          30 QSRLLIVGGGVIGLELAATARTAGVHVSLVETQPRLMSR   68 (121)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTT
T ss_pred             CCeEEEECcchhHHHHHHHhhcccceEEEEeeccccccc
Confidence            468999999999999999999999999999999887543

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.19  E-value=9.5e-07  Score=62.16  Aligned_cols=36  Identities=14%  Similarity=0.243  Sum_probs=33.5

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCC
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY   39 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~   39 (328)
                      .-+|+|||||..|+-+|..|++.|.+|+|+|+++++
T Consensus        22 p~~v~IiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~i   57 (117)
T d1onfa2          22 SKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRI   57 (117)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSS
T ss_pred             CCEEEEECCchHHHHHHHHHHhccccceeeehhccc
Confidence            457999999999999999999999999999998765

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.17  E-value=1.1e-06  Score=62.38  Aligned_cols=37  Identities=27%  Similarity=0.291  Sum_probs=34.0

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG   41 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG   41 (328)
                      .+|+|||||..|+-+|..|++.|.+|+|+|+++++-+
T Consensus        31 k~vvViGgG~iG~E~A~~l~~~g~~Vtlie~~~~~l~   67 (123)
T d1nhpa2          31 NNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLG   67 (123)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTT
T ss_pred             CEEEEECChHHHHHHHHHhhccceEEEEEEecCcccc
Confidence            5899999999999999999999999999999887633

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=98.11  E-value=1e-06  Score=61.90  Aligned_cols=35  Identities=17%  Similarity=0.164  Sum_probs=33.2

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY   39 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~   39 (328)
                      -+++|||||..|+-+|..|++.|.+|+|+|+++++
T Consensus        22 ~~vvIiGgG~~G~E~A~~l~~~g~~Vtlve~~~~i   56 (115)
T d1lvla2          22 QHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERI   56 (115)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHhhcccceEEEeeeccc
Confidence            58999999999999999999999999999998876

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=98.10  E-value=1.3e-06  Score=62.06  Aligned_cols=36  Identities=25%  Similarity=0.391  Sum_probs=33.6

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYG   40 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~G   40 (328)
                      .+++|||||.+|+-+|..|++.|.+|+|+|+++++-
T Consensus        33 ~~vvIiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~l~   68 (122)
T d1xhca2          33 GEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMFL   68 (122)
T ss_dssp             SEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSCCT
T ss_pred             CcEEEECCcHHHHHHHHHhhcccceEEEEecccccc
Confidence            579999999999999999999999999999988764

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.00  E-value=2.9e-06  Score=60.10  Aligned_cols=36  Identities=19%  Similarity=0.253  Sum_probs=33.5

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYG   40 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~G   40 (328)
                      -+++|||||..|+=+|..|++.|.+|+|+|+++++-
T Consensus        24 ~~~vIiG~G~ig~E~A~~l~~lG~~Vtii~~~~~~l   59 (122)
T d1v59a2          24 KRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIG   59 (122)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSS
T ss_pred             CeEEEECCCchHHHHHHHHHhhCcceeEEEeccccc
Confidence            589999999999999999999999999999988763

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.99  E-value=2.9e-06  Score=60.38  Aligned_cols=35  Identities=29%  Similarity=0.372  Sum_probs=33.0

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY   39 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~   39 (328)
                      .+++|||||..|+=+|..|++.|.+|+|+|+++++
T Consensus        23 k~vvIvGgG~iG~E~A~~l~~~G~~Vtlv~~~~~~   57 (125)
T d3grsa2          23 GRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKV   57 (125)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CEEEEEcCCccHHHHHHHHhcCCcEEEEEeecccc
Confidence            57999999999999999999999999999998765

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=97.97  E-value=3.5e-06  Score=59.38  Aligned_cols=35  Identities=20%  Similarity=0.255  Sum_probs=33.0

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY   39 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~   39 (328)
                      -+++|||||..|+=.|..|++.|.+|+|+|+++++
T Consensus        23 ~~i~IiG~G~ig~E~A~~l~~~G~~Vtiv~~~~~l   57 (119)
T d3lada2          23 GKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKF   57 (119)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSS
T ss_pred             CeEEEECCChHHHHHHHHHHHcCCceEEEEeeccc
Confidence            57999999999999999999999999999998775

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=97.90  E-value=5.1e-06  Score=55.68  Aligned_cols=36  Identities=19%  Similarity=0.247  Sum_probs=32.5

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCC
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY   39 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~   39 (328)
                      ..+|+|+|.|.+|+++|..|.++|.+|++.|.+...
T Consensus         5 ~K~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~~~~~   40 (93)
T d2jfga1           5 GKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTP   40 (93)
T ss_dssp             TCCEEEECCSHHHHHHHHHHHHTTCCCEEEESSSSC
T ss_pred             CCEEEEEeECHHHHHHHHHHHHCCCEEEEeeCCcCc
Confidence            357999999999999999999999999999986653

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=97.90  E-value=3.1e-06  Score=64.31  Aligned_cols=38  Identities=18%  Similarity=0.280  Sum_probs=33.1

Q ss_pred             ccEEEECCChhHHHHHHhhhhCC--CeEEEeccCCCCCCc
Q 020312            5 YDVIVLGTGLKECILSGLLSVDG--LKVLHMDRNDYYGGE   42 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G--~~V~vlE~~~~~GG~   42 (328)
                      .+|||||||.+|+.+|..|++.|  .+|+|+|+++.....
T Consensus         3 krivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~~~~~~   42 (186)
T d1fcda1           3 RKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTDYYTC   42 (186)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSCEECS
T ss_pred             CcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCCccccc
Confidence            37999999999999999999988  489999998865444

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=97.85  E-value=4.1e-06  Score=59.41  Aligned_cols=35  Identities=14%  Similarity=0.185  Sum_probs=32.9

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY   39 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~   39 (328)
                      -+++|||||..|+=+|..|++.|.+|+|+|+++++
T Consensus        26 ~~~viiG~G~iglE~A~~~~~~G~~Vtvi~~~~~~   60 (123)
T d1dxla2          26 KKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEI   60 (123)
T ss_dssp             SEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSS
T ss_pred             CeEEEEccchHHHHHHHHHHhcCCeEEEEEEcccc
Confidence            47999999999999999999999999999998765

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.76  E-value=1.4e-05  Score=56.45  Aligned_cols=35  Identities=26%  Similarity=0.257  Sum_probs=31.6

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY   39 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~   39 (328)
                      -+++|||||..|+=+|..|++.|.+|+|+|++...
T Consensus        21 ~~vvIIGgG~iG~E~A~~l~~lG~~Vtii~~~~~l   55 (122)
T d1h6va2          21 GKTLVVGASYVALECAGFLAGIGLDVTVMVRSILL   55 (122)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSS
T ss_pred             CeEEEECCCccHHHHHHHHhhcCCeEEEEEechhh
Confidence            47999999999999999999999999999975433

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=97.75  E-value=1.9e-05  Score=55.70  Aligned_cols=36  Identities=14%  Similarity=0.239  Sum_probs=33.2

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYG   40 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~G   40 (328)
                      ..++|||||..|+-.|..|++.|.+|+++|+++.+.
T Consensus        23 ~~vvVvGgG~ig~E~A~~l~~~g~~vt~i~~~~~~l   58 (121)
T d1mo9a2          23 STVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLK   58 (121)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTT
T ss_pred             CEEEEECCCHHHHHHHHHHHhcchhheEeeccchhh
Confidence            589999999999999999999999999999977653

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=97.74  E-value=1e-05  Score=62.49  Aligned_cols=35  Identities=20%  Similarity=0.197  Sum_probs=31.0

Q ss_pred             ccEEEECCChhHHHHHHhhhhCC--CeEEEeccCCCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDG--LKVLHMDRNDYY   39 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G--~~V~vlE~~~~~   39 (328)
                      ++|+|||||.+|+.+|..|++.+  .+|+|+|+++.+
T Consensus         1 ~KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~~~~   37 (198)
T d1nhpa1           1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFI   37 (198)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSS
T ss_pred             CEEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCCcc
Confidence            47999999999999999999874  689999997765

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=97.69  E-value=1.8e-05  Score=56.05  Aligned_cols=37  Identities=14%  Similarity=0.151  Sum_probs=34.2

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG   41 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG   41 (328)
                      -.++|||||..|+=+|..+++.|.+|+|+|+++++-.
T Consensus        27 ~~vvIiGgG~IG~E~A~~~~~~G~~Vtive~~~~il~   63 (125)
T d1ojta2          27 GKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLMQ   63 (125)
T ss_dssp             SEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSSST
T ss_pred             CeEEEECCCHHHHHHHHHhhcCCCEEEEEEeeccccc
Confidence            5799999999999999999999999999999887654

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=97.69  E-value=1.1e-05  Score=61.33  Aligned_cols=39  Identities=21%  Similarity=0.078  Sum_probs=34.5

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCc
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGE   42 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~   42 (328)
                      +-+|+|||||.+|+-+|..|++.|.+|+|+|..+.....
T Consensus         3 ~~~VvIIGgG~~G~e~A~~l~~~g~~v~v~~~~~~~~~~   41 (185)
T d1q1ra1           3 NDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIP   41 (185)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCCSCC
T ss_pred             CCCEEEECCcHHHHHHHHHHHHcCCceEEEEecCccccc
Confidence            468999999999999999999999999999988765443

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=97.68  E-value=1.7e-05  Score=59.27  Aligned_cols=33  Identities=24%  Similarity=0.316  Sum_probs=29.5

Q ss_pred             cEEEECCChhHHHHHHhhhhCCCeEEEeccCCCC
Q 020312            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY   39 (328)
Q Consensus         6 dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~   39 (328)
                      +|+|||||.+|+-+|..|++ +.+|+|+|+.+.+
T Consensus         2 rVvIIGgG~~G~e~A~~l~~-~~~Vtvv~~~~~~   34 (167)
T d1xhca1           2 KVVIVGNGPGGFELAKQLSQ-TYEVTVIDKEPVP   34 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHTT-TSEEEEECSSSSC
T ss_pred             eEEEECCcHHHHHHHHHHHc-CCCEEEEeccccc
Confidence            69999999999999999975 7899999987654

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=97.63  E-value=2e-05  Score=59.65  Aligned_cols=35  Identities=26%  Similarity=0.279  Sum_probs=31.7

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEeccCCC
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~   38 (328)
                      ...|+|||+|..|..+|.+|+++|++|+|++++..
T Consensus         2 ~K~IliiGaG~~G~~~a~~L~~~g~~V~v~dr~~~   36 (182)
T d1e5qa1           2 TKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLE   36 (182)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHTTTCEEEEEESCHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECChH
Confidence            35799999999999999999999999999998543

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=97.62  E-value=2.2e-05  Score=59.71  Aligned_cols=33  Identities=27%  Similarity=0.347  Sum_probs=30.8

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~   37 (328)
                      .+++|||+|..|+..|..|+++|++|.++++++
T Consensus         2 k~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~   34 (184)
T d1bg6a2           2 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDA   34 (184)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCEEEEEECCH
Confidence            579999999999999999999999999999853

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=97.62  E-value=8.5e-05  Score=51.81  Aligned_cols=52  Identities=17%  Similarity=0.148  Sum_probs=41.4

Q ss_pred             HHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe-cCceEEcCEEEECCC
Q 020312          234 LPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPS  286 (328)
Q Consensus       234 l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~-~g~~~~ad~vV~~~~  286 (328)
                      +.+.+.+.++++|+++++|+.|++|..++++. ..+.. +|+++.||.||.+++
T Consensus        64 ~~~~~~~~l~~~GI~v~~~~~v~~i~~~~~g~-~~v~~~~g~~i~~D~Vi~a~G  116 (117)
T d1feca2          64 LRKQLTEQLRANGINVRTHENPAKVTKNADGT-RHVVFESGAEADYDVVMLAIG  116 (117)
T ss_dssp             HHHHHHHHHHHTTEEEEETCCEEEEEECTTSC-EEEEETTSCEEEESEEEECSC
T ss_pred             hhHHHHHHHhhCcEEEEcCCEEEEEEECCCCE-EEEEECCCCEEEcCEEEEecC
Confidence            45556677889999999999999999873444 45555 889999999998764

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=97.60  E-value=2.7e-05  Score=58.08  Aligned_cols=34  Identities=24%  Similarity=0.186  Sum_probs=31.8

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~   38 (328)
                      ++|+|||+|..|...|..|+++|++|+++.+++.
T Consensus         1 MkI~IiGaG~iG~~~a~~L~~~G~~V~~~~r~~~   34 (167)
T d1ks9a2           1 MKITVLGCGALGQLWLTALCKQGHEVQGWLRVPQ   34 (167)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCceEEEEcCHH
Confidence            4799999999999999999999999999998765

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.59  E-value=2e-05  Score=61.63  Aligned_cols=38  Identities=11%  Similarity=0.183  Sum_probs=32.9

Q ss_pred             CCcccEEEECCChhHHHHHHhhhhCCC--eEEEeccCCCC
Q 020312            2 DEEYDVIVLGTGLKECILSGLLSVDGL--KVLHMDRNDYY   39 (328)
Q Consensus         2 ~~~~dvvIvG~G~aGl~aA~~L~~~G~--~V~vlE~~~~~   39 (328)
                      |.++++||||||.+|+.+|..|.++|.  +|+++++..++
T Consensus         2 p~~~~~vIvG~G~aG~~~A~~Lr~~~~~~~I~li~~e~~~   41 (213)
T d1m6ia1           2 PSHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPEL   41 (213)
T ss_dssp             CSEEEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSSC
T ss_pred             CCCCCEEEECCcHHHHHHHHHHHhcCCCCcEEEEeCCCCC
Confidence            567899999999999999999998875  59999886553

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=97.56  E-value=1.4e-05  Score=60.74  Aligned_cols=38  Identities=26%  Similarity=0.249  Sum_probs=32.7

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCC
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG   41 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG   41 (328)
                      +.+|+|||||.+|+.+|..|.+.|.+|+|++.++....
T Consensus         3 ~a~VvIIGgG~~G~e~A~~l~~~g~~v~i~~~~~~~~~   40 (183)
T d1d7ya1           3 KAPVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAER   40 (183)
T ss_dssp             CSSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESSCSC
T ss_pred             CCCEEEECccHHHHHHHHHHHhcCCceEEEEEeccccc
Confidence            34699999999999999999999999888887666543

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=97.54  E-value=0.00013  Score=50.76  Aligned_cols=51  Identities=20%  Similarity=0.292  Sum_probs=40.7

Q ss_pred             cHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe-cCceEEcCEEEEC
Q 020312          233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCD  284 (328)
Q Consensus       233 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~-~g~~~~ad~vV~~  284 (328)
                      .+.+.+.+.++++|+++++++.|++|+.++++.+ .+++ +|++++||.||.+
T Consensus        65 ~~~~~l~~~l~~~GV~v~~~~~v~~ie~~~~~~~-~v~~~~G~~i~~D~Vi~A  116 (117)
T d1aoga2          65 TLREELTKQLTANGIQILTKENPAKVELNADGSK-SVTFESGKKMDFDLVMMA  116 (117)
T ss_dssp             HHHHHHHHHHHHTTCEEEESCCEEEEEECTTSCE-EEEETTSCEEEESEEEEC
T ss_pred             HHHHHHHHHHHhcCcEEEcCCEEEEEEEcCCCeE-EEEECCCcEEEeCEEEEe
Confidence            3455566778899999999999999997635554 4666 8889999999876

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=97.52  E-value=4.2e-05  Score=53.43  Aligned_cols=36  Identities=17%  Similarity=0.240  Sum_probs=30.3

Q ss_pred             ccEEEECCChhHHHHHHhhh---hCCCeEEEeccCCCCC
Q 020312            5 YDVIVLGTGLKECILSGLLS---VDGLKVLHMDRNDYYG   40 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~---~~G~~V~vlE~~~~~G   40 (328)
                      .+++|||||..|+-+|..|.   .+|.+|+|+|+++++-
T Consensus        21 ~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~~iL   59 (117)
T d1aoga2          21 RRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMIL   59 (117)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSS
T ss_pred             CeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccchhh
Confidence            58999999999999997665   4457899999988764

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.44  E-value=0.0002  Score=51.40  Aligned_cols=52  Identities=17%  Similarity=0.154  Sum_probs=43.1

Q ss_pred             cHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe-cCceEEcCEEEECCC
Q 020312          233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPS  286 (328)
Q Consensus       233 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~-~g~~~~ad~vV~~~~  286 (328)
                      .+.+.+.+.++++|+++++|+.|++|..+ ++++. +++ +|+++.||.||.+++
T Consensus        84 ~~~~~~~~~l~~~GV~~~~~~~V~~i~~~-~~~~~-v~l~~G~~i~aD~Vi~A~G  136 (137)
T d1m6ia2          84 YLSNWTMEKVRREGVKVMPNAIVQSVGVS-SGKLL-IKLKDGRKVETDHIVAAVG  136 (137)
T ss_dssp             HHHHHHHHHHHTTTCEEECSCCEEEEEEE-TTEEE-EEETTSCEEEESEEEECCC
T ss_pred             HHHHHHHHHHHhCCcEEEeCCEEEEEEec-CCEEE-EEECCCCEEECCEEEEeec
Confidence            35666777889999999999999999987 66654 555 889999999998865

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=97.42  E-value=5.7e-05  Score=52.73  Aligned_cols=37  Identities=19%  Similarity=0.228  Sum_probs=31.4

Q ss_pred             ccEEEECCChhHHHHHHhhh---hCCCeEEEeccCCCCCC
Q 020312            5 YDVIVLGTGLKECILSGLLS---VDGLKVLHMDRNDYYGG   41 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~---~~G~~V~vlE~~~~~GG   41 (328)
                      -+++|||||.+|+-+|..|+   +.|.+|+++|+++++..
T Consensus        19 ~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~~il~   58 (117)
T d1feca2          19 KRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILR   58 (117)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSST
T ss_pred             CeEEEECCChHHHHHHHHhHhhcccccccceecccccccc
Confidence            58999999999999997655   45899999999887753

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.28  E-value=0.00012  Score=52.63  Aligned_cols=39  Identities=18%  Similarity=0.238  Sum_probs=33.2

Q ss_pred             ccEEEECCChhHHHHHHhhh----hCCCeEEEeccCCCCCCcc
Q 020312            5 YDVIVLGTGLKECILSGLLS----VDGLKVLHMDRNDYYGGES   43 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~----~~G~~V~vlE~~~~~GG~~   43 (328)
                      .+++|||||.+|+-+|..|+    +.|.+|+++|+++++-.+.
T Consensus        38 k~i~IvGgG~~G~E~A~~l~~~~~~~g~~Vt~i~~~~~~l~~~   80 (137)
T d1m6ia2          38 KSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGKI   80 (137)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTTTTT
T ss_pred             CEEEEECCCHHHHHHHHHHHHHHHhcCCEEEEecccccCCccc
Confidence            47999999999999998886    3589999999999876543

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=97.28  E-value=0.0001  Score=53.45  Aligned_cols=37  Identities=16%  Similarity=0.244  Sum_probs=33.9

Q ss_pred             CCCcccEEEECCChhHHHHHHhhhhCC--CeEEEeccCC
Q 020312            1 MDEEYDVIVLGTGLKECILSGLLSVDG--LKVLHMDRND   37 (328)
Q Consensus         1 ~~~~~dvvIvG~G~aGl~aA~~L~~~G--~~V~vlE~~~   37 (328)
                      |+++.+|+|||+|-.|.++|+.|+++|  .++.++|...
T Consensus         2 m~~~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~   40 (146)
T d1ez4a1           2 MPNHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVK   40 (146)
T ss_dssp             BTTBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeeccc
Confidence            788999999999999999999999988  5899999754

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.24  E-value=0.00013  Score=51.97  Aligned_cols=33  Identities=24%  Similarity=0.357  Sum_probs=30.9

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~   37 (328)
                      ++|+|+|+|-.|...|..|.+.|++|+++|++.
T Consensus         1 M~IvI~G~G~~G~~la~~L~~~g~~v~vid~d~   33 (132)
T d1lssa_           1 MYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDK   33 (132)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCcceecCCh
Confidence            479999999999999999999999999999954

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.22  E-value=0.00019  Score=52.77  Aligned_cols=39  Identities=18%  Similarity=0.084  Sum_probs=33.2

Q ss_pred             ccEEEE--CCChhHHHHHHhhhhCCCeEEEeccCCCCCCcc
Q 020312            5 YDVIVL--GTGLKECILSGLLSVDGLKVLHMDRNDYYGGES   43 (328)
Q Consensus         5 ~dvvIv--G~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~   43 (328)
                      -.++|+  |||..|+.+|-.|+++|.+|+|+|+.++++-..
T Consensus        40 ~~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~~~~~~~   80 (156)
T d1djqa2          40 KRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVHLANYMH   80 (156)
T ss_dssp             SEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSCTTTHHH
T ss_pred             CceEEEecCCChHHHHHHHHHHHcCCeEEEEecCCcccccc
Confidence            345555  999999999999999999999999988876543

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.21  E-value=0.00013  Score=55.59  Aligned_cols=33  Identities=24%  Similarity=0.415  Sum_probs=31.0

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~   37 (328)
                      -+|+|||+|..|.+.|+.++++|++|+++|.++
T Consensus         5 kkvaViGaG~mG~~iA~~~a~~G~~V~l~D~~~   37 (192)
T d1f0ya2           5 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTE   37 (192)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEEECcCHHHHHHHHHHHhCCCcEEEEECCh
Confidence            489999999999999999999999999999865

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.19  E-value=0.00014  Score=56.07  Aligned_cols=33  Identities=24%  Similarity=0.466  Sum_probs=30.6

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~   37 (328)
                      ++|.|||.|..||+.|..|+++|++|+.+|.+.
T Consensus         1 MkI~ViGlG~vGl~~a~~la~~g~~V~g~D~n~   33 (202)
T d1mv8a2           1 MRISIFGLGYVGAVCAGCLSARGHEVIGVDVSS   33 (202)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CEEEEECCCHhHHHHHHHHHhCCCcEEEEeCCH
Confidence            469999999999999999999999999999753

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=97.14  E-value=0.00045  Score=48.42  Aligned_cols=52  Identities=17%  Similarity=0.132  Sum_probs=42.7

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEecCceEEcCEEEECC
Q 020312          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDP  285 (328)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~~g~~~~ad~vV~~~  285 (328)
                      ..+.+.+.+.++++|+++++++.|++|..+  +.+..+.++++++.||.||++.
T Consensus        72 ~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~--~~~~~v~~dg~~i~~D~vi~aI  123 (123)
T d1nhpa2          72 KEFTDVLTEEMEANNITIATGETVERYEGD--GRVQKVVTDKNAYDADLVVVAV  123 (123)
T ss_dssp             HHHHHHHHHHHHTTTEEEEESCCEEEEECS--SBCCEEEESSCEEECSEEEECS
T ss_pred             hhhHHHHHHHhhcCCeEEEeCceEEEEEcC--CCEEEEEeCCCEEECCEEEEEC
Confidence            346677778889999999999999999865  5566667799999999998763

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.11  E-value=0.00089  Score=46.74  Aligned_cols=53  Identities=15%  Similarity=0.269  Sum_probs=41.3

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe-cC-----ceEEcCEEEEC
Q 020312          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EG-----ETAKCKKVVCD  284 (328)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~-~g-----~~~~ad~vV~~  284 (328)
                      ..+.+.+.+.++++|+++++|+.|++|+.++++..+.++. ++     ++++||.|+++
T Consensus        64 ~ei~~~l~~~l~~~GV~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~~~~~ie~D~vlvA  122 (122)
T d1v59a2          64 GEVAKATQKFLKKQGLDFKLSTKVISAKRNDDKNVVEIVVEDTKTNKQENLEAEVLLVA  122 (122)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEESEEEEC
T ss_pred             hhhHHHHHHHHHhccceEEeCCEEEEEEEeCCCcEEEEEEEeCCCCCeEEEEeCEEEEC
Confidence            3577888888999999999999999999875565555554 22     36999998764

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=97.10  E-value=0.0008  Score=46.85  Aligned_cols=54  Identities=15%  Similarity=0.068  Sum_probs=42.5

Q ss_pred             cHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe----cCceEEcCEEEECCC
Q 020312          233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS----EGETAKCKKVVCDPS  286 (328)
Q Consensus       233 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~----~g~~~~ad~vV~~~~  286 (328)
                      .+.+.+.+.+++.|+++++++.|++|+.++++.+..+..    ++++++||.||++.+
T Consensus        64 ~~~~~~~~~l~~~gI~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~i~~D~Vi~a~G  121 (121)
T d1mo9a2          64 ETRAYVLDRMKEQGMEIISGSNVTRIEEDANGRVQAVVAMTPNGEMRIETDFVFLGLG  121 (121)
T ss_dssp             HHHHHHHHHHHHTTCEEESSCEEEEEEECTTSBEEEEEEEETTEEEEEECSCEEECCC
T ss_pred             chhhhhhhhhhccccEEEcCCEEEEEEecCCceEEEEEEEeCCCCEEEEcCEEEEEEC
Confidence            466777788899999999999999999885666655543    445799999998753

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=97.05  E-value=0.00029  Score=51.63  Aligned_cols=33  Identities=24%  Similarity=0.245  Sum_probs=31.2

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEeccC
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRN   36 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~   36 (328)
                      ..+|+|||+|.+|+.|+..++..|-+|+++|.+
T Consensus        32 pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~   64 (168)
T d1pjca1          32 PGKVVILGGGVVGTEAAKMAVGLGAQVQIFDIN   64 (168)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CcEEEEECCChHHHHHHHHHhhCCCEEEEEeCc
Confidence            579999999999999999999999999999984

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=97.05  E-value=0.00019  Score=54.55  Aligned_cols=36  Identities=22%  Similarity=0.148  Sum_probs=31.8

Q ss_pred             CCcccEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312            2 DEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (328)
Q Consensus         2 ~~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~   37 (328)
                      +.-.+|+|||+|.-|.+.|..|++.|++|+++.+++
T Consensus         5 ~~m~KI~ViGaG~wGtAlA~~La~~g~~V~l~~r~~   40 (189)
T d1n1ea2           5 LYLNKAVVFGSGAFGTALAMVLSKKCREVCVWHMNE   40 (189)
T ss_dssp             CCEEEEEEECCSHHHHHHHHHHHTTEEEEEEECSCH
T ss_pred             ceeceEEEECCCHHHHHHHHHHHHcCCeEEEEEecH
Confidence            334579999999999999999999999999998743

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=97.03  E-value=0.00019  Score=54.37  Aligned_cols=33  Identities=24%  Similarity=0.285  Sum_probs=30.7

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~   37 (328)
                      .+|+|||+|..|...|..++++|++|+++|.++
T Consensus         5 ~~vaViGaG~mG~~iA~~~a~~G~~V~l~D~~~   37 (186)
T d1wdka3           5 KQAAVLGAGIMGGGIAYQSASKGTPILMKDINE   37 (186)
T ss_dssp             SSEEEECCHHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            469999999999999999999999999999864

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=97.02  E-value=0.00077  Score=47.15  Aligned_cols=54  Identities=19%  Similarity=0.274  Sum_probs=41.3

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe--cC--ceEEcCEEEECC
Q 020312          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS--EG--ETAKCKKVVCDP  285 (328)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~--~g--~~~~ad~vV~~~  285 (328)
                      ..+.+.+.+.+++.|++|++|+.|++|+.++++..+.++.  ++  ++++||.|++++
T Consensus        66 ~~~~~~l~~~l~~~GI~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vLvAA  123 (123)
T d1dxla2          66 AEIRKQFQRSLEKQGMKFKLKTKVVGVDTSGDGVKLTVEPSAGGEQTIIEADVVLVSA  123 (123)
T ss_dssp             HHHHHHHHHHHHHSSCCEECSEEEEEEECSSSSEEEEEEESSSCCCEEEEESEEECCC
T ss_pred             hcchhhhhhhhhcccceEEcCCceEEEEEccCeEEEEEEECCCCeEEEEEcCEEEEcC
Confidence            4577888888999999999999999999873444445554  33  358999988764

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=97.02  E-value=0.00087  Score=46.55  Aligned_cols=54  Identities=9%  Similarity=0.122  Sum_probs=41.0

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEE-EEe--cCceEEcCEEEECCC
Q 020312          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVG-VTS--EGETAKCKKVVCDPS  286 (328)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~-v~~--~g~~~~ad~vV~~~~  286 (328)
                      ..+.+.+.+.++++|++++++++|++|+.+ ++.+.. +..  +++++.||.|+++.+
T Consensus        63 ~ei~~~l~~~l~~~Gv~i~~~~~v~~i~~~-~~~v~v~~~~~~~~~~~~~D~vlvAvG  119 (119)
T d3lada2          63 EQVAKEAQKILTKQGLKILLGARVTGTEVK-NKQVTVKFVDAEGEKSQAFDKLIVAVG  119 (119)
T ss_dssp             HHHHHHHHHHHHHTTEEEEETCEEEEEEEC-SSCEEEEEESSSEEEEEEESEEEECSC
T ss_pred             chhHHHHHHHHHhcCceeecCcEEEEEEEe-CCEEEEEEEECCCCEEEECCEEEEeeC
Confidence            457788888899999999999999999988 555332 222  235799999987753

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=97.00  E-value=0.0013  Score=45.51  Aligned_cols=53  Identities=4%  Similarity=-0.017  Sum_probs=41.7

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe-cCceEE-cCEEEECC
Q 020312          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAK-CKKVVCDP  285 (328)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~-~g~~~~-ad~vV~~~  285 (328)
                      ..+.+.+.+.+++.|+++++++.|++|+..+++.+ .+++ +|+.++ +|.||.+.
T Consensus        63 ~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~-~v~~~~G~~~~~~D~Vi~AI  117 (117)
T d1onfa2          63 ESVINVLENDMKKNNINIVTFADVVEIKKVSDKNL-SIHLSDGRIYEHFDHVIYCV  117 (117)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEESSTTCE-EEEETTSCEEEEESEEEECC
T ss_pred             HHHHHHHHHHHHhCCCEEEECCEEEEEEEcCCCeE-EEEECCCCEEEeCCEEEEeC
Confidence            45778888889999999999999999997745544 4555 777775 69998763

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.95  E-value=0.0011  Score=45.82  Aligned_cols=51  Identities=16%  Similarity=0.117  Sum_probs=39.3

Q ss_pred             cHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEE-EEEecC--ceEEcCEEEEC
Q 020312          233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVV-GVTSEG--ETAKCKKVVCD  284 (328)
Q Consensus       233 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~-~v~~~g--~~~~ad~vV~~  284 (328)
                      .+.+.+.+.++++|+++++++.|++|+.+ ++.+. .+..++  ++++||.|+++
T Consensus        64 ~~~~~l~~~l~~~GI~i~~~~~v~~i~~~-~~~~~v~~~~~g~~~~i~~D~Vlvs  117 (117)
T d1ebda2          64 QMAAIIKKRLKKKGVEVVTNALAKGAEER-EDGVTVTYEANGETKTIDADYVLVT  117 (117)
T ss_dssp             HHHHHHHHHHHHTTCEEEESEEEEEEEEE-TTEEEEEEEETTEEEEEEESEEEEC
T ss_pred             hhHHHHHHHHHhcCCEEEcCCEEEEEEEc-CCEEEEEEEeCCCEEEEEeEEEEEC
Confidence            47778888899999999999999999987 44443 233354  46899998864

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=96.89  E-value=0.0005  Score=51.07  Aligned_cols=34  Identities=21%  Similarity=0.191  Sum_probs=31.5

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~   37 (328)
                      ..+|+|||+|.+|+.||.-....|-+|+++|.+.
T Consensus        29 pa~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~   62 (183)
T d1l7da1          29 PARVLVFGVGVAGLQAIATAKRLGAVVMATDVRA   62 (183)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCS
T ss_pred             CcEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccH
Confidence            4689999999999999999999999999999854

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=96.84  E-value=0.00051  Score=50.12  Aligned_cols=37  Identities=19%  Similarity=0.297  Sum_probs=32.2

Q ss_pred             CCCcccEEEECCChhHHHHHHhhhhCCC-eEEEeccCC
Q 020312            1 MDEEYDVIVLGTGLKECILSGLLSVDGL-KVLHMDRND   37 (328)
Q Consensus         1 ~~~~~dvvIvG~G~aGl~aA~~L~~~G~-~V~vlE~~~   37 (328)
                      |.++.+|+|||+|-.|.++|+.|++.|. ++++++.+.
T Consensus         4 ~~k~~KI~IIGaG~VG~~lA~~l~~~~~~el~L~D~~~   41 (154)
T d1pzga1           4 VQRRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVK   41 (154)
T ss_dssp             CSCCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred             ccCCCcEEEECCCHHHHHHHHHHHhCCCceEEEEEecc
Confidence            4557999999999999999999999885 799998754

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.83  E-value=0.00054  Score=49.97  Aligned_cols=35  Identities=26%  Similarity=0.202  Sum_probs=30.7

Q ss_pred             ccEEEECCChhHHHHHHhhhhCC-CeEEEeccCCCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDG-LKVLHMDRNDYY   39 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G-~~V~vlE~~~~~   39 (328)
                      -+|+|||||-+|+=||..|.+.| .+|+++++++..
T Consensus        46 ~kVvVIGGGdtA~D~A~~a~r~GA~~V~vi~rr~~~   81 (153)
T d1gtea3          46 GAVIVLGAGDTAFDCATSALRCGARRVFLVFRKGFV   81 (153)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCGG
T ss_pred             CEEEEECCChhHHHHHHHHHHcCCcceeEEEeCChh
Confidence            47999999999999999999998 569999987653

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.79  E-value=0.00043  Score=52.08  Aligned_cols=31  Identities=29%  Similarity=0.217  Sum_probs=29.0

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEecc
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDR   35 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~   35 (328)
                      ++|+|||+|.-|.+.|..|++.|++|+++.+
T Consensus         1 MkI~ViGaG~~GtalA~~la~~g~~V~l~~r   31 (180)
T d1txga2           1 MIVSILGAGAMGSALSVPLVDNGNEVRIWGT   31 (180)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHHCCEEEEECC
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEEe
Confidence            4799999999999999999999999999955

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=96.74  E-value=0.00065  Score=50.25  Aligned_cols=33  Identities=27%  Similarity=0.397  Sum_probs=30.3

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~   37 (328)
                      ++|.|||.|..|.+.|..|+++|++|+++++++
T Consensus         1 MkI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~~   33 (165)
T d2f1ka2           1 MKIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQ   33 (165)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCCEEEEEECCc
Confidence            469999999999999999999999999999853

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=96.74  E-value=0.00051  Score=48.89  Aligned_cols=32  Identities=28%  Similarity=0.291  Sum_probs=30.1

Q ss_pred             cEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (328)
Q Consensus         6 dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~   37 (328)
                      +++|||.|-.|...|..|.+.|++|+++|.+.
T Consensus         2 ~~iIiG~G~~G~~la~~L~~~g~~vvvid~d~   33 (134)
T d2hmva1           2 QFAVIGLGRFGGSIVKELHRMGHEVLAVDINE   33 (134)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCCEEEESCH
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCeEEEecCcH
Confidence            68999999999999999999999999999854

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=96.58  E-value=0.0021  Score=44.92  Aligned_cols=54  Identities=19%  Similarity=0.229  Sum_probs=41.5

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcE-EEEEe-cC--ceEEcCEEEECCC
Q 020312          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKV-VGVTS-EG--ETAKCKKVVCDPS  286 (328)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v-~~v~~-~g--~~~~ad~vV~~~~  286 (328)
                      ..+.+.+.+.++++|+++++++.|++++.+ ++.+ +.++. ++  ++++||.|+++++
T Consensus        67 ~~~~~~l~~~l~~~gv~~~~~~~v~~v~~~-~~g~~v~~~~~~g~~~~i~~D~vl~A~G  124 (125)
T d1ojta2          67 RDLVKVWQKQNEYRFDNIMVNTKTVAVEPK-EDGVYVTFEGANAPKEPQRYDAVLVAAG  124 (125)
T ss_dssp             HHHHHHHHHHHGGGEEEEECSCEEEEEEEE-TTEEEEEEESSSCCSSCEEESCEEECCC
T ss_pred             hhHHHHHHHHHHHcCcccccCcEEEEEEEc-CCcEEEEEEeCCCCeEEEEcCEEEEecC
Confidence            357788888899999999999999999988 4443 33333 22  4699999998764

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=96.38  E-value=0.0037  Score=42.91  Aligned_cols=52  Identities=15%  Similarity=0.114  Sum_probs=38.7

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe--cCceEEcCEEEECCC
Q 020312          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS--EGETAKCKKVVCDPS  286 (328)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~--~g~~~~ad~vV~~~~  286 (328)
                      ..+.+.+.+.++++|++++++++|+++.   ++..+....  ++++++||.||++++
T Consensus        62 ~~~~~~l~~~l~~~gV~i~~~~~V~~i~---~~~~~~~~~~~~~~~i~~D~vi~A~G  115 (115)
T d1lvla2          62 SELTAPVAESLKKLGIALHLGHSVEGYE---NGCLLANDGKGGQLRLEADRVLVAVG  115 (115)
T ss_dssp             HHHHHHHHHHHHHHTCEEETTCEEEEEE---TTEEEEECSSSCCCEECCSCEEECCC
T ss_pred             chhHHHHHHHHHhhcceEEcCcEEEEEc---CCeEEEEEcCCCeEEEEcCEEEEecC
Confidence            3477778888999999999999999995   344333333  335799999987753

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=96.37  E-value=0.0021  Score=46.66  Aligned_cols=33  Identities=21%  Similarity=0.462  Sum_probs=30.5

Q ss_pred             ccEEEEC-CChhHHHHHHhhhhCCCeEEEeccCC
Q 020312            5 YDVIVLG-TGLKECILSGLLSVDGLKVLHMDRND   37 (328)
Q Consensus         5 ~dvvIvG-~G~aGl~aA~~L~~~G~~V~vlE~~~   37 (328)
                      .+|+||| .|.-|.+.|..|+++|++|.+++++.
T Consensus        10 ~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~   43 (152)
T d2pv7a2          10 HKIVIVGGYGKLGGLFARYLRASGYPISILDRED   43 (152)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTC
T ss_pred             CeEEEEcCCCHHHHHHHHHHHHcCCCcEeccccc
Confidence            4899999 69999999999999999999999854

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=96.28  E-value=0.0056  Score=42.39  Aligned_cols=50  Identities=20%  Similarity=0.244  Sum_probs=38.4

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEecCceEEcCEEEECCC
Q 020312          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPS  286 (328)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~~g~~~~ad~vV~~~~  286 (328)
                      ..+.+.+.+.++++|+++++++.|+++.   ++.+  ...+|+++.||.||.+.+
T Consensus        72 ~~~~~~~~~~l~~~GV~i~~~~~v~~~~---~~~v--~l~dg~~i~~D~vi~a~G  121 (121)
T d1d7ya2          72 ATLADFVARYHAAQGVDLRFERSVTGSV---DGVV--LLDDGTRIAADMVVVGIG  121 (121)
T ss_dssp             HHHHHHHHHHHHTTTCEEEESCCEEEEE---TTEE--EETTSCEEECSEEEECSC
T ss_pred             HHHHHHHHHHHHHCCcEEEeCCEEEEEe---CCEE--EECCCCEEECCEEEEeeC
Confidence            3466677778899999999999999886   3332  233889999999998753

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=96.24  E-value=0.0017  Score=49.36  Aligned_cols=32  Identities=28%  Similarity=0.193  Sum_probs=28.5

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~   37 (328)
                      ++|+|||.|-.||.+|..|+ +|++|+.+|-++
T Consensus         1 MkI~ViGlG~vGl~~a~~~a-~g~~V~g~Din~   32 (196)
T d1dlja2           1 MKIAVAGSGYVGLSLGVLLS-LQNEVTIVDILP   32 (196)
T ss_dssp             CEEEEECCSHHHHHHHHHHT-TTSEEEEECSCH
T ss_pred             CEEEEECCChhHHHHHHHHH-CCCcEEEEECCH
Confidence            46999999999999999887 599999999754

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.19  E-value=0.0021  Score=48.63  Aligned_cols=33  Identities=27%  Similarity=0.239  Sum_probs=29.4

Q ss_pred             ccEEEE-CCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312            5 YDVIVL-GTGLKECILSGLLSVDGLKVLHMDRND   37 (328)
Q Consensus         5 ~dvvIv-G~G~aGl~aA~~L~~~G~~V~vlE~~~   37 (328)
                      ++|+|| |+|--|.+.|..|+++|++|+|..|+.
T Consensus         1 Mki~vigGaG~iG~alA~~la~~G~~V~l~~R~~   34 (212)
T d1jaya_           1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRRE   34 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSH
T ss_pred             CEEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            469999 669999999999999999999998743

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=96.13  E-value=0.0023  Score=43.38  Aligned_cols=34  Identities=15%  Similarity=0.002  Sum_probs=29.5

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~   37 (328)
                      ..+|+|||+|.||+=.|.+|++.+.+|+++-+++
T Consensus        32 gK~VlVVG~g~Sa~dia~~l~~~ak~v~~~~~r~   65 (107)
T d2gv8a2          32 GESVLVVGGASSANDLVRHLTPVAKHPIYQSLLG   65 (107)
T ss_dssp             TCCEEEECSSHHHHHHHHHHTTTSCSSEEEECTT
T ss_pred             CCeEEEECCCCCHHHHHHHHHHhcCEEEEEEecC
Confidence            3689999999999999999999998887776643

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.98  E-value=0.0031  Score=46.21  Aligned_cols=32  Identities=28%  Similarity=0.315  Sum_probs=29.9

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRN   36 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~   36 (328)
                      ++|.|||-|..|...|..|+++|++|.+++++
T Consensus         1 MkIgiIGlG~MG~~~A~~L~~~G~~V~~~d~~   32 (161)
T d1vpda2           1 MKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRN   32 (161)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSC
T ss_pred             CEEEEEehhHHHHHHHHHHHHCCCeEEEEeCC
Confidence            46999999999999999999999999999874

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.95  E-value=0.0035  Score=45.16  Aligned_cols=33  Identities=24%  Similarity=0.398  Sum_probs=29.7

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCC--eEEEeccC
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGL--KVLHMDRN   36 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~--~V~vlE~~   36 (328)
                      ..+|.|||+|-.|.++|+.|+..|.  ++.++|..
T Consensus         6 ~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~   40 (148)
T d1ldna1           6 GARVVVIGAGFVGASYVFALMNQGIADEIVLIDAN   40 (148)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS
T ss_pred             CCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeec
Confidence            4799999999999999999999884  79999974

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=95.88  E-value=0.0045  Score=45.10  Aligned_cols=33  Identities=15%  Similarity=0.119  Sum_probs=30.4

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCC--eEEEeccC
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGL--KVLHMDRN   36 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~--~V~vlE~~   36 (328)
                      +.+|+|||+|..|.++|+.|+..|.  ++.++|.+
T Consensus        20 ~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~   54 (160)
T d1i0za1          20 NNKITVVGVGQVGMACAISILGKSLADELALVDVL   54 (160)
T ss_dssp             SSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSC
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEec
Confidence            5699999999999999999999995  89999975

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.84  E-value=0.016  Score=40.18  Aligned_cols=54  Identities=11%  Similarity=-0.021  Sum_probs=39.0

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcE-EEEEe-cCc------eEEcCEEEECC
Q 020312          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKV-VGVTS-EGE------TAKCKKVVCDP  285 (328)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v-~~v~~-~g~------~~~ad~vV~~~  285 (328)
                      ..+.+.+.+.+++.|+++++|+.|++|..++++.. ..+.. .|+      ..+||.|+++.
T Consensus        63 ~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~g~~v~~~~~~~g~~~~~~~~~~~D~vl~a~  124 (125)
T d3grsa2          63 SMISTNCTEELENAGVEVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAI  124 (125)
T ss_dssp             HHHHHHHHHHHHHTTCEEETTEEEEEEEEETTEEEEEEEECCTTSCCEEEEEEEESEEEECS
T ss_pred             hHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeEEEEEEEccCCcCcCccccccCCEEEEEe
Confidence            34778888889999999999999999998733322 22222 332      46799998775

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.77  E-value=0.0033  Score=45.44  Aligned_cols=31  Identities=16%  Similarity=0.162  Sum_probs=29.0

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEec
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMD   34 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE   34 (328)
                      ...|+|||||-.|+.-|..|.+.|-+|+|+-
T Consensus        13 gkrvLViGgG~va~~ka~~Ll~~GA~VtVva   43 (150)
T d1kyqa1          13 DKRILLIGGGEVGLTRLYKLMPTGCKLTLVS   43 (150)
T ss_dssp             TCEEEEEEESHHHHHHHHHHGGGTCEEEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEe
Confidence            4689999999999999999999999999993

>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=95.76  E-value=0.0067  Score=42.29  Aligned_cols=36  Identities=25%  Similarity=0.206  Sum_probs=33.1

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCC
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY   39 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~   39 (328)
                      ..+|+|||+|-+.+=.|.+|++...+|+++-+++..
T Consensus        27 ~k~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~~   62 (126)
T d1trba2          27 NQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGF   62 (126)
T ss_dssp             TSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSC
T ss_pred             CCEEEEECCCHHHHHHHHHHhhcCCcEEEEeecccc
Confidence            468999999999999999999999999999987754

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=95.74  E-value=0.0079  Score=41.63  Aligned_cols=49  Identities=16%  Similarity=0.204  Sum_probs=39.1

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEecCceEEcCEEEECCC
Q 020312          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPS  286 (328)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~~g~~~~ad~vV~~~~  286 (328)
                      ..+.+.+.+.++++|+++++|+.|+++..+   .   +.++++.++||.||++.+
T Consensus        72 ~~~~~~~~~~l~~~GV~~~~~~~v~~~~~~---~---v~~~~~~i~~D~vi~a~G  120 (122)
T d1xhca2          72 EELSNMIKDMLEETGVKFFLNSELLEANEE---G---VLTNSGFIEGKVKICAIG  120 (122)
T ss_dssp             HHHHHHHHHHHHHTTEEEECSCCEEEECSS---E---EEETTEEEECSCEEEECC
T ss_pred             HHHHHHHHHHHHHCCcEEEeCCEEEEEeCC---E---EEeCCCEEECCEEEEEEE
Confidence            346677778889999999999999998533   2   456888999999987765

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.73  E-value=0.005  Score=45.07  Aligned_cols=31  Identities=16%  Similarity=0.160  Sum_probs=29.5

Q ss_pred             cEEEECCChhHHHHHHhhhhCCCeEEEeccC
Q 020312            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRN   36 (328)
Q Consensus         6 dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~   36 (328)
                      +|.|||-|..|...|.+|.++|++|.+++++
T Consensus         3 kIg~IGlG~MG~~iA~~L~~~g~~v~~~d~~   33 (162)
T d3cuma2           3 QIAFIGLGHMGAPMATNLLKAGYLLNVFDLV   33 (162)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSS
T ss_pred             EEEEEEEHHHHHHHHHHHHHCCCeEEEEECc
Confidence            5999999999999999999999999999974

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=95.71  E-value=0.005  Score=45.83  Aligned_cols=32  Identities=31%  Similarity=0.407  Sum_probs=30.1

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRN   36 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~   36 (328)
                      ++|-|||-|..|...|.+|.++|++|.+++++
T Consensus         2 MkIGvIGlG~MG~~ma~~L~~~G~~V~~~dr~   33 (178)
T d1pgja2           2 MDVGVVGLGVMGANLALNIAEKGFKVAVFNRT   33 (178)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             CEEEEEeehHHHHHHHHHHHHCCCeEEEEECC
Confidence            57999999999999999999999999999873

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.71  E-value=0.0062  Score=44.26  Aligned_cols=33  Identities=18%  Similarity=0.279  Sum_probs=29.8

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCC--eEEEeccC
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGL--KVLHMDRN   36 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~--~V~vlE~~   36 (328)
                      ..+|.|||+|-.|.++|+.|...|.  ++.+++.+
T Consensus        19 ~~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~   53 (159)
T d2ldxa1          19 RCKITVVGVGDVGMACAISILLKGLADELALVDAD   53 (159)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTSCSEEEEECSC
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence            4689999999999999999999985  89999874

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=95.67  E-value=0.0059  Score=43.57  Aligned_cols=32  Identities=19%  Similarity=0.270  Sum_probs=29.0

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCC--eEEEeccC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGL--KVLHMDRN   36 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~--~V~vlE~~   36 (328)
                      .+|+|||+|..|.++|+.|+.+|.  ++.+++.+
T Consensus         2 ~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~   35 (143)
T d1llda1           2 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIA   35 (143)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEec
Confidence            479999999999999999999985  89999964

>d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=95.64  E-value=0.007  Score=42.18  Aligned_cols=37  Identities=16%  Similarity=-0.063  Sum_probs=33.5

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCC
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYG   40 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~G   40 (328)
                      ..+|+|||+|-+.+-.|.+|++...+|+++-+++..-
T Consensus        30 gk~V~VvGgG~sA~~~A~~L~~~a~~V~li~r~~~~~   66 (126)
T d1fl2a2          30 GKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMK   66 (126)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTBSEEEEECSSSSCC
T ss_pred             CceEEEEeCCHHHHHHHHhhhccCCceEEEecccccc
Confidence            4689999999999999999999999999999887653

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=95.62  E-value=0.0063  Score=43.42  Aligned_cols=33  Identities=15%  Similarity=0.194  Sum_probs=29.7

Q ss_pred             ccEEEECCChhHHHHHHhhhhCC--CeEEEeccCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDG--LKVLHMDRND   37 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G--~~V~vlE~~~   37 (328)
                      ++|+|||+|-.|.++|+.|+..|  .++.++|.++
T Consensus         1 mKI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~~   35 (142)
T d1guza1           1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVE   35 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCceEEEecccc
Confidence            47999999999999999999998  5899999765

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.57  E-value=0.006  Score=43.66  Aligned_cols=32  Identities=19%  Similarity=0.310  Sum_probs=28.5

Q ss_pred             ccEEEECC-ChhHHHHHHhhhhCC--CeEEEeccC
Q 020312            5 YDVIVLGT-GLKECILSGLLSVDG--LKVLHMDRN   36 (328)
Q Consensus         5 ~dvvIvG~-G~aGl~aA~~L~~~G--~~V~vlE~~   36 (328)
                      ++|+|||+ |-.|.++|+.|++.|  .++.+++..
T Consensus         1 MKV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~   35 (145)
T d1hyea1           1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGRE   35 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECG
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCcccccccccch
Confidence            47999996 999999999999999  489999874

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.50  E-value=0.0067  Score=41.35  Aligned_cols=32  Identities=19%  Similarity=0.188  Sum_probs=29.7

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEecc
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDR   35 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~   35 (328)
                      ...|+|||+|-.|..-|..|.+.|.+|+|+..
T Consensus        12 ~k~vlVvG~G~va~~ka~~ll~~ga~v~v~~~   43 (113)
T d1pjqa1          12 DRDCLIVGGGDVAERKARLLLEAGARLTVNAL   43 (113)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTBEEEEEES
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence            46899999999999999999999999999864

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=95.50  E-value=0.007  Score=43.13  Aligned_cols=33  Identities=12%  Similarity=0.215  Sum_probs=29.2

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCC--eEEEeccCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGL--KVLHMDRND   37 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~--~V~vlE~~~   37 (328)
                      .+|+|||+|-.|.++|+.|+.+|.  ++.++|...
T Consensus         2 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~~   36 (142)
T d1y6ja1           2 SKVAIIGAGFVGASAAFTMALRQTANELVLIDVFK   36 (142)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC-
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeccC
Confidence            479999999999999999999985  899999765

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=95.49  E-value=0.0057  Score=43.64  Aligned_cols=32  Identities=9%  Similarity=-0.025  Sum_probs=28.6

Q ss_pred             ccEEEECCChhHHHHHHhhhhCC--CeEEEeccC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDG--LKVLHMDRN   36 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G--~~V~vlE~~   36 (328)
                      ++|+|||+|-.|.++|+.|+..|  -++.++|.+
T Consensus         1 MKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~   34 (142)
T d1ojua1           1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIA   34 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSS
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCcCceEEEEecc
Confidence            47999999999999999999888  479999864

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=95.43  E-value=0.0078  Score=44.67  Aligned_cols=34  Identities=18%  Similarity=0.212  Sum_probs=31.1

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~   37 (328)
                      +.+|.|||-|..|...|..|.++|++|.+++++.
T Consensus         2 ~~nIg~IGlG~MG~~mA~~L~~~G~~V~v~dr~~   35 (176)
T d2pgda2           2 QADIALIGLAVMGQNLILNMNDHGFVVCAFNRTV   35 (176)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTCCEEEECSST
T ss_pred             CCcEEEEeEhHHHHHHHHHHHHCCCeEEEEcCCH
Confidence            3579999999999999999999999999999854

>d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.41  E-value=0.012  Score=41.19  Aligned_cols=38  Identities=24%  Similarity=0.313  Sum_probs=34.6

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCC
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG   41 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG   41 (328)
                      ..+|+|||||-+.+-.|.+|++--.+|+++-+++.+-+
T Consensus        34 gk~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~~ra   71 (130)
T d1vdca2          34 NKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAFRA   71 (130)
T ss_dssp             TSEEEEECCSHHHHHHHHHHTTTSSEEEEECSSSSCCS
T ss_pred             CCEEEEEcCchHHHHHHHHHhCCCCcEEEEEecccccc
Confidence            46999999999999999999999999999999887644

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=95.40  E-value=0.0063  Score=43.43  Aligned_cols=33  Identities=15%  Similarity=0.346  Sum_probs=29.0

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCC-eEEEeccCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGL-KVLHMDRND   37 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~-~V~vlE~~~   37 (328)
                      .+|.|||+|-.|.++|+.|++.+. ++++++...
T Consensus         2 ~KI~IIGaG~VG~~~A~~l~~~~l~dl~l~D~~~   35 (142)
T d1uxja1           2 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVE   35 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCcceEEEEeecc
Confidence            479999999999999999999884 899998654

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=95.37  E-value=0.0062  Score=43.63  Aligned_cols=33  Identities=18%  Similarity=0.268  Sum_probs=28.9

Q ss_pred             ccEEEECCChhHHHHHHhhhhCC--CeEEEeccCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDG--LKVLHMDRND   37 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G--~~V~vlE~~~   37 (328)
                      .+|+|||+|-.|.++|+.|+.+|  -++.+++.+.
T Consensus         2 kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~   36 (146)
T d1hyha1           2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANE   36 (146)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CeEEEECcCHHHHHHHHHHHhcCCCceEEEEeccc
Confidence            47999999999999999999988  4899998753

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=95.33  E-value=0.0099  Score=42.74  Aligned_cols=34  Identities=15%  Similarity=0.341  Sum_probs=29.7

Q ss_pred             cccEEEECCChhHHHHHHhhhhCC-CeEEEeccCC
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDG-LKVLHMDRND   37 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G-~~V~vlE~~~   37 (328)
                      +.+|.|||+|-.|.++|+.|++.+ .++.+++...
T Consensus         3 ~~KI~IIGaG~VG~~~a~~l~~~~l~el~L~Di~~   37 (150)
T d1t2da1           3 KAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVK   37 (150)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCCeEEEEeccC
Confidence            579999999999999999999887 4799999744

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=95.29  E-value=0.0092  Score=43.97  Aligned_cols=33  Identities=15%  Similarity=0.070  Sum_probs=30.3

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEeccC
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRN   36 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~   36 (328)
                      ..+|+|+|+|-++-++++.|.+.|.+|+|+-|+
T Consensus        18 ~k~vlIlGaGGaarai~~al~~~g~~i~I~nRt   50 (170)
T d1nyta1          18 GLRILLIGAGGASRGVLLPLLSLDCAVTITNRT   50 (170)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             CCEEEEECCcHHHHHHHHHhcccceEEEeccch
Confidence            468999999999999999999999999999774

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=95.24  E-value=0.0092  Score=43.05  Aligned_cols=33  Identities=21%  Similarity=0.208  Sum_probs=30.0

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~   37 (328)
                      ++|.|||.|..|...|..|.++|++|++..+..
T Consensus         1 MkIgiIG~G~mG~~ia~~l~~~g~~v~~~~~~~   33 (152)
T d1i36a2           1 LRVGFIGFGEVAQTLASRLRSRGVEVVTSLEGR   33 (152)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCEEEECCTTC
T ss_pred             CEEEEEcHHHHHHHHHHHHHHCCCeEEEEcCch
Confidence            469999999999999999999999999997644

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=95.20  E-value=0.011  Score=43.40  Aligned_cols=34  Identities=26%  Similarity=0.319  Sum_probs=30.4

Q ss_pred             CcccEEEECCChhHHHHHHhhhhCCC-eEEEeccC
Q 020312            3 EEYDVIVLGTGLKECILSGLLSVDGL-KVLHMDRN   36 (328)
Q Consensus         3 ~~~dvvIvG~G~aGl~aA~~L~~~G~-~V~vlE~~   36 (328)
                      ++.+|+|+|+|-++-++++.|.+.|. +|.|+-|+
T Consensus        16 ~~~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~   50 (167)
T d1npya1          16 KNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARN   50 (167)
T ss_dssp             TTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSC
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEeccc
Confidence            45789999999999999999999995 79999774

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.17  E-value=0.0099  Score=49.52  Aligned_cols=37  Identities=19%  Similarity=0.311  Sum_probs=33.4

Q ss_pred             CCCcccEEEECC-ChhHHHHHHhhhhCCCeEEEeccCC
Q 020312            1 MDEEYDVIVLGT-GLKECILSGLLSVDGLKVLHMDRND   37 (328)
Q Consensus         1 ~~~~~dvvIvG~-G~aGl~aA~~L~~~G~~V~vlE~~~   37 (328)
                      |.++++|+|.|| |..|...+.+|.++|++|+++++..
T Consensus        12 ~~~nMKILVTGgsGfIGs~lv~~L~~~g~~V~~~d~~~   49 (363)
T d2c5aa1          12 PSENLKISITGAGGFIASHIARRLKHEGHYVIASDWKK   49 (363)
T ss_dssp             TTSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCC
Confidence            678899999995 9999999999999999999998643

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=95.04  E-value=0.0095  Score=42.31  Aligned_cols=33  Identities=15%  Similarity=0.221  Sum_probs=29.0

Q ss_pred             ccEEEECCChhHHHHHHhhhhCC--CeEEEeccCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDG--LKVLHMDRND   37 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G--~~V~vlE~~~   37 (328)
                      ++|+|||+|-.|.++|+.|+.+|  .++.++|...
T Consensus         1 mKI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~~   35 (140)
T d1a5za1           1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDK   35 (140)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeccc
Confidence            47999999999999999999887  5899998753

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=95.01  E-value=0.011  Score=38.81  Aligned_cols=36  Identities=17%  Similarity=0.180  Sum_probs=31.3

Q ss_pred             CCCcccEEEECCChhHHHH-HHhhhhCCCeEEEeccC
Q 020312            1 MDEEYDVIVLGTGLKECIL-SGLLSVDGLKVLHMDRN   36 (328)
Q Consensus         1 ~~~~~dvvIvG~G~aGl~a-A~~L~~~G~~V~vlE~~   36 (328)
                      |....++-+||-|=+|+++ |..|.++|++|+.-|..
T Consensus         5 ~~~~~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~~   41 (96)
T d1p3da1           5 MRRVQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIA   41 (96)
T ss_dssp             CTTCCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESC
T ss_pred             chhCCEEEEEEECHHHHHHHHHHHHhCCCEEEEEeCC
Confidence            3445788999999999999 99999999999999874

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=94.94  E-value=0.012  Score=43.30  Aligned_cols=33  Identities=21%  Similarity=0.186  Sum_probs=29.9

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~   37 (328)
                      -.|+|+|+|..|+.++..++..|.+|+++|.++
T Consensus        28 ~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~   60 (170)
T d1e3ja2          28 TTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSP   60 (170)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEEcccccchhhHhhHhhhcccccccchHH
Confidence            468999999999999999999999999999753

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=94.88  E-value=0.0095  Score=43.39  Aligned_cols=25  Identities=24%  Similarity=0.170  Sum_probs=23.2

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCe
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLK   29 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~   29 (328)
                      .+|+|||||.+|+-+|..|++.|.+
T Consensus        30 krVvVIGgG~~g~d~a~~~~r~G~~   54 (162)
T d1ps9a2          30 NKVAIIGCGGIGFDTAMYLSQPGES   54 (162)
T ss_dssp             SEEEEECCHHHHHHHHHHHTCCSSC
T ss_pred             CceEEEcCchhHHHHHHHHHHcCCc
Confidence            5899999999999999999999965

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=94.82  E-value=0.014  Score=41.56  Aligned_cols=32  Identities=31%  Similarity=0.210  Sum_probs=27.9

Q ss_pred             cEEEECC-ChhHHHHHHhhhhCC--CeEEEeccCC
Q 020312            6 DVIVLGT-GLKECILSGLLSVDG--LKVLHMDRND   37 (328)
Q Consensus         6 dvvIvG~-G~aGl~aA~~L~~~G--~~V~vlE~~~   37 (328)
                      +|+|||| |..|.++|+.|++.|  -++.++|.++
T Consensus         2 Kv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~   36 (144)
T d1mlda1           2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAH   36 (144)
T ss_dssp             EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSS
T ss_pred             eEEEECCCChHHHHHHHHHHhCCccceEEEEeccc
Confidence            7999996 999999999999998  4688998743

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.71  E-value=0.015  Score=42.57  Aligned_cols=33  Identities=21%  Similarity=0.155  Sum_probs=29.7

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEeccC
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRN   36 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~   36 (328)
                      .-.|+|+|+|..|+.++..++..|.+|++++++
T Consensus        28 g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~   60 (166)
T d1llua2          28 GQWVAISGIGGLGHVAVQYARAMGLHVAAIDID   60 (166)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCEEEEeeccccHHHHHHHHHHcCCccceecch
Confidence            357999999999999999999999999999874

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.64  E-value=0.015  Score=42.71  Aligned_cols=33  Identities=21%  Similarity=0.202  Sum_probs=29.3

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCC-eEEEeccCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGL-KVLHMDRND   37 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~-~V~vlE~~~   37 (328)
                      -.|+|+|+|..|+.++..+...|. +|++.|.++
T Consensus        28 d~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~   61 (171)
T d1pl8a2          28 HKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSA   61 (171)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCH
T ss_pred             CEEEEECCCccHHHHHHHHHHcCCceEEeccCCH
Confidence            468999999999999999999997 799998743

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=94.61  E-value=0.017  Score=41.58  Aligned_cols=33  Identities=18%  Similarity=0.069  Sum_probs=30.4

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~   37 (328)
                      =.++|+|.|-.|...|..|.+.|.+|+|+|..+
T Consensus         4 nHiII~G~g~~g~~l~~~L~~~~~~v~vId~d~   36 (153)
T d1id1a_           4 DHFIVCGHSILAINTILQLNQRGQNVTVISNLP   36 (153)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCEEEEeccc
Confidence            369999999999999999999999999999754

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=94.59  E-value=0.018  Score=42.17  Aligned_cols=31  Identities=26%  Similarity=0.475  Sum_probs=27.6

Q ss_pred             cEEEECCChhHHHHHHhhhhCCC--eEEEeccC
Q 020312            6 DVIVLGTGLKECILSGLLSVDGL--KVLHMDRN   36 (328)
Q Consensus         6 dvvIvG~G~aGl~aA~~L~~~G~--~V~vlE~~   36 (328)
                      +|.|||.|..|.+.|..|.+.|+  +|..+|++
T Consensus         3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~   35 (171)
T d2g5ca2           3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDIN   35 (171)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSC
T ss_pred             EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECC
Confidence            59999999999999999999995  67778874

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=94.45  E-value=0.02  Score=41.16  Aligned_cols=33  Identities=9%  Similarity=0.077  Sum_probs=30.0

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~   37 (328)
                      +++.|||+|.-|.+.|..|.+.|++|+|.+++.
T Consensus         1 MkIg~IG~G~mG~al~~~l~~~~~~i~v~~r~~   33 (152)
T d2ahra2           1 MKIGIIGVGKMASAIIKGLKQTPHELIISGSSL   33 (152)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTSSCEEEEECSSH
T ss_pred             CEEEEEeccHHHHHHHHHHHhCCCeEEEEcChH
Confidence            469999999999999999999999999998743

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.25  E-value=0.023  Score=41.58  Aligned_cols=35  Identities=14%  Similarity=0.108  Sum_probs=30.5

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEeccCCC
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~   38 (328)
                      .-.|+|+|+|..|+.++..++..|.+|++++.++.
T Consensus        28 g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~   62 (168)
T d1piwa2          28 GKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSR   62 (168)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSST
T ss_pred             CCEEEEECCCCcchhHHHHhhhccccccccccchh
Confidence            35789999999999999988888999999998653

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=93.83  E-value=0.03  Score=45.03  Aligned_cols=35  Identities=14%  Similarity=0.138  Sum_probs=31.4

Q ss_pred             CcccEEEECC-ChhHHHHHHhhhhCCCeEEEeccCC
Q 020312            3 EEYDVIVLGT-GLKECILSGLLSVDGLKVLHMDRND   37 (328)
Q Consensus         3 ~~~dvvIvG~-G~aGl~aA~~L~~~G~~V~vlE~~~   37 (328)
                      ++.+|+|+|| |..|...+.+|.++|++|+++-|+.
T Consensus         2 ~k~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~   37 (312)
T d1qyda_           2 KKSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPE   37 (312)
T ss_dssp             CCCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCC
Confidence            4678999997 9999999999999999999998753

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.59  E-value=0.081  Score=36.20  Aligned_cols=54  Identities=17%  Similarity=0.164  Sum_probs=38.0

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCcceeEEEecCCC--cEEEEEe---c-Cc--eEEcCEEEECC
Q 020312          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEG--KVVGVTS---E-GE--TAKCKKVVCDP  285 (328)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~--~v~~v~~---~-g~--~~~ad~vV~~~  285 (328)
                      ..+.+.+.+.+++.|++|++|+.|++++..+++  ....+..   + ++  ..++|.|+++.
T Consensus        60 ~~~~~~l~~~l~~~Gv~i~~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~D~vl~Ai  121 (122)
T d1h6va2          60 QDMANKIGEHMEEHGIKFIRQFVPTKIEQIEAGTPGRLKVTAKSTNSEETIEDEFNTVLLAV  121 (122)
T ss_dssp             HHHHHHHHHHHHHTTEEEEESCEEEEEEEEECSTTCEEEEEEECTTSCEEEEEEESEEECCC
T ss_pred             HHHHHHHHHHHHHCCCEEEECCEEEEEEEecCCCccEEEEEEEECCCCcEEEEECCEEEEEe
Confidence            347888888999999999999999999865322  2223332   2 22  35789998765

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=93.42  E-value=0.019  Score=41.36  Aligned_cols=27  Identities=22%  Similarity=0.155  Sum_probs=24.5

Q ss_pred             CCCcccEEEECC-ChhHHHHHHhhhhCC
Q 020312            1 MDEEYDVIVLGT-GLKECILSGLLSVDG   27 (328)
Q Consensus         1 ~~~~~dvvIvG~-G~aGl~aA~~L~~~G   27 (328)
                      |+.+++|.|||| |..|-++|+.|++.+
T Consensus         1 m~~p~KV~IiGA~G~VG~~~a~~l~~~~   28 (154)
T d1y7ta1           1 MKAPVRVAVTGAAGQIGYSLLFRIAAGE   28 (154)
T ss_dssp             CCCCEEEEESSTTSHHHHHHHHHHHTTT
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHhcc
Confidence            777889999996 999999999999875

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=93.30  E-value=0.03  Score=41.10  Aligned_cols=33  Identities=18%  Similarity=0.159  Sum_probs=30.1

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEeccC
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRN   36 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~   36 (328)
                      ...|+|+|+|-++-++++.|.+.+.+|+|+-|+
T Consensus        18 ~k~vlIlGaGGaarai~~aL~~~~~~i~I~nR~   50 (171)
T d1p77a1          18 NQHVLILGAGGATKGVLLPLLQAQQNIVLANRT   50 (171)
T ss_dssp             TCEEEEECCSHHHHTTHHHHHHTTCEEEEEESS
T ss_pred             CCEEEEECCcHHHHHHHHHHcccCceeeeccch
Confidence            468999999999999999999988999999874

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.28  E-value=0.046  Score=41.26  Aligned_cols=33  Identities=15%  Similarity=0.199  Sum_probs=29.6

Q ss_pred             cccEEEECC-ChhHHHHHHhhhhCCCeEEEeccC
Q 020312            4 EYDVIVLGT-GLKECILSGLLSVDGLKVLHMDRN   36 (328)
Q Consensus         4 ~~dvvIvG~-G~aGl~aA~~L~~~G~~V~vlE~~   36 (328)
                      ..+|+|+|| |..|-..+.+|.++|++|+++-|+
T Consensus         3 ~kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~   36 (205)
T d1hdoa_           3 VKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRD   36 (205)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcC
Confidence            347999995 999999999999999999999874

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=93.24  E-value=0.044  Score=38.74  Aligned_cols=31  Identities=19%  Similarity=0.279  Sum_probs=27.4

Q ss_pred             ccEEEEC-CChhHHHHHHhhhhCCC--eEEEecc
Q 020312            5 YDVIVLG-TGLKECILSGLLSVDGL--KVLHMDR   35 (328)
Q Consensus         5 ~dvvIvG-~G~aGl~aA~~L~~~G~--~V~vlE~   35 (328)
                      .+|.||| +|-.|.++|+.|+.+|.  ++.++|.
T Consensus         1 sKV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di   34 (142)
T d1o6za1           1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDI   34 (142)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECC
T ss_pred             CeEEEECCCCcHHHHHHHHHHhCCCCCEEEEEec
Confidence            3799999 69999999999999984  7899885

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=93.02  E-value=0.043  Score=40.60  Aligned_cols=33  Identities=15%  Similarity=0.138  Sum_probs=29.2

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCC-eEEEeccCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGL-KVLHMDRND   37 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~-~V~vlE~~~   37 (328)
                      -.|+|+|+|..|+.++..+...|. +|++++.++
T Consensus        30 ~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~   63 (182)
T d1vj0a2          30 KTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSP   63 (182)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCH
T ss_pred             CEEEEECCCccchhheeccccccccccccccccc
Confidence            578899999999999999999996 799998744

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=92.99  E-value=0.042  Score=39.38  Aligned_cols=33  Identities=24%  Similarity=0.405  Sum_probs=28.9

Q ss_pred             ccEEEECCChhHHHHHHhhhhCC-CeEEEeccCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDG-LKVLHMDRND   37 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G-~~V~vlE~~~   37 (328)
                      ++|.+||+|--|.+.|..|.++| ++|.+.+++.
T Consensus         1 MkI~fIG~G~MG~ai~~~l~~~~~~~i~v~~r~~   34 (152)
T d1yqga2           1 MNVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGA   34 (152)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSCEEEEECSSH
T ss_pred             CEEEEEcCcHHHHHHHHHHHHCCCCcEEEEeCCh
Confidence            47999999999999999888887 9999998843

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=92.97  E-value=0.051  Score=40.00  Aligned_cols=31  Identities=16%  Similarity=0.348  Sum_probs=28.0

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEecc
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDR   35 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~   35 (328)
                      ..+|+|+|+|-++-++++.|.+.| +|.|+-|
T Consensus        18 ~k~vlIlGaGG~arai~~aL~~~~-~i~I~nR   48 (177)
T d1nvta1          18 DKNIVIYGAGGAARAVAFELAKDN-NIIIANR   48 (177)
T ss_dssp             SCEEEEECCSHHHHHHHHHHTSSS-EEEEECS
T ss_pred             CCEEEEECCcHHHHHHHHHHcccc-ceeeehh
Confidence            468999999999999999998887 8999977

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=92.94  E-value=0.046  Score=38.79  Aligned_cols=33  Identities=30%  Similarity=0.219  Sum_probs=26.9

Q ss_pred             ccEEEEC-CChhHHHHHHhhh-hC--CCeEEEeccCC
Q 020312            5 YDVIVLG-TGLKECILSGLLS-VD--GLKVLHMDRND   37 (328)
Q Consensus         5 ~dvvIvG-~G~aGl~aA~~L~-~~--G~~V~vlE~~~   37 (328)
                      ++|+||| +|-.|-++|+.|+ +.  +.++.++|..+
T Consensus         1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~   37 (145)
T d2cmda1           1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAP   37 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSST
T ss_pred             CEEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecccc
Confidence            4799999 5999999999886 43  47899998643

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=92.93  E-value=0.047  Score=40.22  Aligned_cols=33  Identities=18%  Similarity=0.191  Sum_probs=29.3

Q ss_pred             ccEEEECCChhHHHHHHhhhhCC-CeEEEeccCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDG-LKVLHMDRND   37 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G-~~V~vlE~~~   37 (328)
                      --|+|+|+|..|+.++..++..| .+|+++|.++
T Consensus        31 ~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~   64 (176)
T d1d1ta2          31 STCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNK   64 (176)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCG
T ss_pred             CEEEEECCCchhHHHHHHHHHcCCceEEEecCcH
Confidence            34899999999999999999999 6899999754

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=92.92  E-value=0.058  Score=39.26  Aligned_cols=34  Identities=21%  Similarity=0.159  Sum_probs=29.5

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~   37 (328)
                      .-.|+|+|+|..|+.++..++..|.+|++++.++
T Consensus        31 G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~   64 (168)
T d1uufa2          31 GKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSE   64 (168)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             CCEEEEeccchHHHHHHHHhhcccccchhhccch
Confidence            3568999999999999999999999999988743

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=92.87  E-value=0.048  Score=39.58  Aligned_cols=33  Identities=21%  Similarity=0.174  Sum_probs=29.1

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEeccC
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRN   36 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~   36 (328)
                      .-.|+|.|+|..|+.++..++..|.+|.+.+.+
T Consensus        28 g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~   60 (168)
T d1rjwa2          28 GEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIG   60 (168)
T ss_dssp             TCEEEEECCSTTHHHHHHHHHHTTCEEEEECSC
T ss_pred             CCEEEEeecccchhhhhHHHhcCCCeEeccCCC
Confidence            346899999999999999999999999999863

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=92.73  E-value=0.066  Score=39.58  Aligned_cols=35  Identities=20%  Similarity=0.399  Sum_probs=30.2

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCC-eEEEeccCCC
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGL-KVLHMDRNDY   38 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~-~V~vlE~~~~   38 (328)
                      ..+|+|+|+|-+|-++++.|.+.|. +++|+.|+..
T Consensus        18 ~k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~~~   53 (182)
T d1vi2a1          18 GKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDE   53 (182)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSST
T ss_pred             CCEEEEECCcHHHHHHHHHHhhcCCceEeeeccchH
Confidence            4689999999999999999999985 7889887543

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=92.72  E-value=0.057  Score=39.66  Aligned_cols=33  Identities=15%  Similarity=0.255  Sum_probs=29.0

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCC-eEEEeccC
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGL-KVLHMDRN   36 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~-~V~vlE~~   36 (328)
                      .-.|+|+|+|..|+.++..++..|. +|++.+.+
T Consensus        28 g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~   61 (174)
T d1jqba2          28 GSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSR   61 (174)
T ss_dssp             TCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCC
T ss_pred             CCEEEEEcCCcchhhhhhhhhcccccccccccch
Confidence            3579999999999999999999995 79999874

>d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=92.69  E-value=0.072  Score=36.05  Aligned_cols=34  Identities=26%  Similarity=0.308  Sum_probs=29.5

Q ss_pred             cccEEEECCC-----------hhHHHHHHhhhhCCCeEEEeccCC
Q 020312            4 EYDVIVLGTG-----------LKECILSGLLSVDGLKVLHMDRND   37 (328)
Q Consensus         4 ~~dvvIvG~G-----------~aGl~aA~~L~~~G~~V~vlE~~~   37 (328)
                      ..+|+|||+|           .++..|+..|.+.|++++++--++
T Consensus         4 ~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~~~IliN~NP   48 (121)
T d1a9xa4           4 REKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNP   48 (121)
T ss_dssp             SCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTCEEEEECCCT
T ss_pred             CCEEEEECCCcCcccccchhhHHHHHHHHHHHhcCCeEEEEecCh
Confidence            4689999998           578899999999999999997544

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=92.67  E-value=0.055  Score=43.07  Aligned_cols=34  Identities=12%  Similarity=0.148  Sum_probs=31.3

Q ss_pred             cccEEEECC-ChhHHHHHHhhhhCCCeEEEeccCC
Q 020312            4 EYDVIVLGT-GLKECILSGLLSVDGLKVLHMDRND   37 (328)
Q Consensus         4 ~~dvvIvG~-G~aGl~aA~~L~~~G~~V~vlE~~~   37 (328)
                      +.+|+|+|| |..|-..+..|.++|++|+++.|+.
T Consensus         3 kkKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~   37 (307)
T d1qyca_           3 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRES   37 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCC
Confidence            568999998 9999999999999999999999864

>d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=92.66  E-value=0.037  Score=42.50  Aligned_cols=33  Identities=21%  Similarity=0.265  Sum_probs=29.3

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEeccC
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRN   36 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~   36 (328)
                      ..+|+|||+|-+|.=+|..|++.+.+++++=++
T Consensus        32 gK~V~VvG~G~Sa~dia~~~~~~~~~~~~~~~~   64 (235)
T d1w4xa2          32 GQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRT   64 (235)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHBSEEEEEESS
T ss_pred             CCEEEEECCCccHHHHHHHHHhhhccccccccc
Confidence            368999999999999999999999988887654

>d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=92.64  E-value=0.077  Score=36.37  Aligned_cols=37  Identities=22%  Similarity=0.429  Sum_probs=31.2

Q ss_pred             CCC---cccEEEECCCh-----------hHHHHHHhhhhCCCeEEEeccCC
Q 020312            1 MDE---EYDVIVLGTGL-----------KECILSGLLSVDGLKVLHMDRND   37 (328)
Q Consensus         1 ~~~---~~dvvIvG~G~-----------aGl~aA~~L~~~G~~V~vlE~~~   37 (328)
                      ||+   ..+|+|||+|.           ++..|+..|.+.|++++++--++
T Consensus         1 mp~~~~~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g~~~iliN~NP   51 (127)
T d1a9xa3           1 MPKRTDIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVINVNSNP   51 (127)
T ss_dssp             CCCCSSCCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTCEEEEECSCT
T ss_pred             CCCCCCCCEEEEECCCcCcccccchhHHHHHHHHHHHHHcCCeEEEecCch
Confidence            664   36899999985           78889999999999999997654

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=92.59  E-value=0.047  Score=43.19  Aligned_cols=34  Identities=18%  Similarity=0.300  Sum_probs=31.1

Q ss_pred             cccEEEECC-ChhHHHHHHhhhhCCCeEEEeccCC
Q 020312            4 EYDVIVLGT-GLKECILSGLLSVDGLKVLHMDRND   37 (328)
Q Consensus         4 ~~dvvIvG~-G~aGl~aA~~L~~~G~~V~vlE~~~   37 (328)
                      +++|+|.|| |..|-..+.+|.++|++|+.+.+++
T Consensus         1 ~MKIlItGasGfiG~~l~~~L~~~g~~Vi~~~r~~   35 (281)
T d1vl0a_           1 HMKILITGANGQLGREIQKQLKGKNVEVIPTDVQD   35 (281)
T ss_dssp             CEEEEEESTTSHHHHHHHHHHTTSSEEEEEECTTT
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCEEEEeechh
Confidence            468999998 9999999999999999999998864

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=92.24  E-value=0.11  Score=34.89  Aligned_cols=35  Identities=23%  Similarity=0.219  Sum_probs=31.5

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEeccCCC
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~   38 (328)
                      .++|.|+|||=-|--.|....+.|++|.+++.+..
T Consensus        11 ~~kigIlGgGQL~rMla~aA~~lG~~v~v~d~~~~   45 (111)
T d1kjqa2          11 ATRVMLLGSGELGKEVAIECQRLGVEVIAVDRYAD   45 (111)
T ss_dssp             CCEEEEESCSHHHHHHHHHHHTTTCEEEEEESSTT
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCCCC
Confidence            46899999999999999999999999999998643

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=92.23  E-value=0.063  Score=39.40  Aligned_cols=33  Identities=18%  Similarity=0.191  Sum_probs=28.6

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCC-eEEEeccCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGL-KVLHMDRND   37 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~-~V~vlE~~~   37 (328)
                      -.|+|+|+|..|+.++..+...|. +|++.|.++
T Consensus        30 ~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~   63 (174)
T d1e3ia2          30 STCAVFGLGCVGLSAIIGCKIAGASRIIAIDING   63 (174)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCG
T ss_pred             CEEEEECCChHHHHHHHHHHHhCCceeeeeccch
Confidence            468999999999999999999996 677888754

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=91.93  E-value=0.076  Score=39.75  Aligned_cols=33  Identities=24%  Similarity=0.146  Sum_probs=27.7

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCC-eEEEeccC
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGL-KVLHMDRN   36 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~-~V~vlE~~   36 (328)
                      .-.|+|+|+|..|+.++..++..|. +|++.+.+
T Consensus        26 G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~   59 (195)
T d1kola2          26 GSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLN   59 (195)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESC
T ss_pred             CCEEEEECcCHHHHHHHHHHHhhcccceeeeccc
Confidence            4578999999999999999887775 78888864

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.88  E-value=0.05  Score=41.40  Aligned_cols=42  Identities=12%  Similarity=0.128  Sum_probs=33.8

Q ss_pred             HHHcCcEEEcCcceeEEEecCCCcEEEEEe-cCceEEcCEEEECCCC
Q 020312          242 SAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSY  287 (328)
Q Consensus       242 ~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~-~g~~~~ad~vV~~~~~  287 (328)
                      +++.|++++++++|++|+.+ ++.   |++ +|+++.||.+|.+.+.
T Consensus        93 ~~~~gI~~~~g~~V~~id~~-~~~---V~l~dG~~i~~d~lViAtG~  135 (213)
T d1m6ia1          93 IENGGVAVLTGKKVVQLDVR-DNM---VKLNDGSQITYEKCLIATGG  135 (213)
T ss_dssp             STTCEEEEEETCCEEEEEGG-GTE---EEETTSCEEEEEEEEECCCE
T ss_pred             HHHCCeEEEeCCEEEEeecc-Cce---eeeccceeeccceEEEeeee
Confidence            46789999999999999876 443   455 8889999998877654

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=91.79  E-value=0.091  Score=39.12  Aligned_cols=34  Identities=26%  Similarity=0.279  Sum_probs=29.5

Q ss_pred             cccEEEEC-CChhHHHHHHhhhhCCCeEEEeccCC
Q 020312            4 EYDVIVLG-TGLKECILSGLLSVDGLKVLHMDRND   37 (328)
Q Consensus         4 ~~dvvIvG-~G~aGl~aA~~L~~~G~~V~vlE~~~   37 (328)
                      ...|+|.| +|-.|..+|..|+++|.+|+++.++.
T Consensus        23 gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~   57 (191)
T d1luaa1          23 GKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKL   57 (191)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhhccchhhcccch
Confidence            45788888 58889999999999999999998853

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GidA-like
domain: GidA-related protein TTHA1897
species: Thermus thermophilus [TaxId: 274]

Probab=91.70  E-value=0.23  Score=37.94  Aligned_cols=40  Identities=25%  Similarity=0.312  Sum_probs=33.0

Q ss_pred             CcEEEcCcceeEEEecCCCcEEEEEe-cCceEEcCEEEECCCC
Q 020312          246 GGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSY  287 (328)
Q Consensus       246 G~~i~~~~~V~~I~~~~~~~v~~v~~-~g~~~~ad~vV~~~~~  287 (328)
                      +..++ ...|.++..+ ++++.+|++ +|.++.|+.||++++-
T Consensus        82 nL~i~-q~~V~dli~e-~~~v~gV~t~~G~~~~AkaVILtTGT  122 (230)
T d2cula1          82 PLHLF-QATATGLLLE-GNRVVGVRTWEGPPARGEKVVLAVGS  122 (230)
T ss_dssp             TEEEE-ECCEEEEEEE-TTEEEEEEETTSCCEECSEEEECCTT
T ss_pred             CHHHH-hccceeeEec-ccceeeEEeccccEEEEeEEEEccCc
Confidence            66665 5678888888 889999999 7889999999977654

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=91.46  E-value=0.1  Score=41.73  Aligned_cols=31  Identities=19%  Similarity=0.109  Sum_probs=24.9

Q ss_pred             EEEEC-CChhHHHHHHhhhhCCCeEEEeccCC
Q 020312            7 VIVLG-TGLKECILSGLLSVDGLKVLHMDRND   37 (328)
Q Consensus         7 vvIvG-~G~aGl~aA~~L~~~G~~V~vlE~~~   37 (328)
                      ++|.| +|-.|..+|.+|+++|.+|++..++.
T Consensus        28 alITGas~GIG~aiA~~la~~Ga~Vii~~r~~   59 (294)
T d1w6ua_          28 AFITGGGTGLGKGMTTLLSSLGAQCVIASRKM   59 (294)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEeCCCCHHHHHHHHHHHHcCCEEEEEECCH
Confidence            44555 45569999999999999999998743

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=91.35  E-value=0.097  Score=37.71  Aligned_cols=33  Identities=27%  Similarity=0.375  Sum_probs=29.2

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCC-eEEEeccC
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGL-KVLHMDRN   36 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~-~V~vlE~~   36 (328)
                      ...|+|||+|-.|-.+|.+|.+.|. +++|.=|.
T Consensus        24 ~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt   57 (159)
T d1gpja2          24 DKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRT   57 (159)
T ss_dssp             TCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSS
T ss_pred             cCeEEEECCCHHHHHHHHHHHhcCCcEEEEEcCc
Confidence            5689999999999999999999996 69998763

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=91.07  E-value=0.096  Score=37.54  Aligned_cols=34  Identities=15%  Similarity=0.031  Sum_probs=31.6

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~   37 (328)
                      -..++|+|=|..|-.+|..|+..|-+|+|.|..+
T Consensus        23 Gk~vvV~GYG~vGrG~A~~~rg~Ga~V~V~E~DP   56 (163)
T d1v8ba1          23 GKIVVICGYGDVGKGCASSMKGLGARVYITEIDP   56 (163)
T ss_dssp             TSEEEEECCSHHHHHHHHHHHHHTCEEEEECSCH
T ss_pred             CCEEEEecccccchhHHHHHHhCCCEEEEEecCc
Confidence            3589999999999999999999999999999865

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=91.05  E-value=0.077  Score=41.34  Aligned_cols=33  Identities=24%  Similarity=0.456  Sum_probs=29.4

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCC-eEEEeccC
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGL-KVLHMDRN   36 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~-~V~vlE~~   36 (328)
                      +.+|+|||+|-.|..+|..|++.|. +++|+|..
T Consensus        30 ~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D   63 (247)
T d1jw9b_          30 DSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFD   63 (247)
T ss_dssp             HCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCC
T ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCc
Confidence            4689999999999999999999995 78998863

>d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha-hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=90.71  E-value=0.12  Score=40.20  Aligned_cols=32  Identities=19%  Similarity=0.300  Sum_probs=25.3

Q ss_pred             cEE-EECC-ChhHHHHHHhhhhCCCeEEEeccCC
Q 020312            6 DVI-VLGT-GLKECILSGLLSVDGLKVLHMDRND   37 (328)
Q Consensus         6 dvv-IvG~-G~aGl~aA~~L~~~G~~V~vlE~~~   37 (328)
                      +|| |.|| +-.|+.+|..|+++|.+|+++.+++
T Consensus         2 kVvlITGas~GIG~aiA~~la~~Ga~V~~~~~~~   35 (257)
T d1fjha_           2 SIIVISGCATGIGAATRKVLEAAGHQIVGIDIRD   35 (257)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCh
Confidence            465 4565 3458999999999999999998764

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=90.41  E-value=0.12  Score=37.81  Aligned_cols=32  Identities=16%  Similarity=0.133  Sum_probs=26.2

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeE-EEecc
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKV-LHMDR   35 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V-~vlE~   35 (328)
                      .-.|+|+|+|..|+.++..++..|.++ .+.+.
T Consensus        29 g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~   61 (174)
T d1f8fa2          29 ASSFVTWGAGAVGLSALLAAKVCGASIIIAVDI   61 (174)
T ss_dssp             TCEEEEESCSHHHHHHHHHHHHHTCSEEEEEES
T ss_pred             CCEEEEeCCCHHHhhhhhcccccccceeeeecc
Confidence            357999999999999999998888765 55554

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=90.28  E-value=0.22  Score=31.77  Aligned_cols=33  Identities=12%  Similarity=0.033  Sum_probs=27.6

Q ss_pred             ccEEEECCChhHHHH-HHhhhhCCCeEEEeccCC
Q 020312            5 YDVIVLGTGLKECIL-SGLLSVDGLKVLHMDRND   37 (328)
Q Consensus         5 ~dvvIvG~G~aGl~a-A~~L~~~G~~V~vlE~~~   37 (328)
                      ++|=+||-|=+|+++ |..|.++|++|..-|...
T Consensus         2 ~~ihfiGIgG~GMs~LA~~L~~~G~~VsGSD~~~   35 (89)
T d1j6ua1           2 MKIHFVGIGGIGMSAVALHEFSNGNDVYGSNIEE   35 (89)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             cEEEEEeECHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence            467788988888876 888999999999998753

>d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=90.25  E-value=0.14  Score=39.09  Aligned_cols=34  Identities=18%  Similarity=0.177  Sum_probs=29.2

Q ss_pred             ccEEEECCChhHHHHHHhhhhC--------------------C-CeEEEeccCCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVD--------------------G-LKVLHMDRNDY   38 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~--------------------G-~~V~vlE~~~~   38 (328)
                      -+|+|||+|-.++=||..|.+.                    | .+|.++.|+..
T Consensus        40 k~VvVIGgGNVAlD~aR~l~r~~~~l~~tdi~~~~l~~l~~~g~~~V~iv~RRg~   94 (225)
T d1cjca1          40 DTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRGP   94 (225)
T ss_dssp             SEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSCG
T ss_pred             ceEEEECCchhHHHHHHHHhcCHHhhcCCCCcHHHHHHHhccCCCeEEEEEEcCh
Confidence            5899999999999999999883                    5 78999987553

>d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Transcriptional repressor Rex, C-terminal domain
domain: Transcriptional repressor Rex, C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=90.21  E-value=0.1  Score=35.88  Aligned_cols=36  Identities=11%  Similarity=0.229  Sum_probs=26.9

Q ss_pred             CcccEEEECCChhHHHHHHhhhh-CCCe-EEEeccCCC
Q 020312            3 EEYDVIVLGTGLKECILSGLLSV-DGLK-VLHMDRNDY   38 (328)
Q Consensus         3 ~~~dvvIvG~G~aGl~aA~~L~~-~G~~-V~vlE~~~~   38 (328)
                      .++.|+|+|||-+|-..+.+|.+ .|++ |..+|-+..
T Consensus         2 ~~~~v~I~GaG~~G~~l~~~l~~~~~~~iv~fiDdd~~   39 (126)
T d2dt5a2           2 RKWGLCIVGMGRLGSALADYPGFGESFELRGFFDVDPE   39 (126)
T ss_dssp             SCEEEEEECCSHHHHHHHHCSCCCSSEEEEEEEESCTT
T ss_pred             CCceEEEEcCCHHHHHHHHhHhhcCCcEEEEEEeCchH
Confidence            46799999999999988887764 3566 556665443

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=90.02  E-value=0.12  Score=37.88  Aligned_cols=33  Identities=12%  Similarity=0.089  Sum_probs=28.2

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCC-eEEEeccCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGL-KVLHMDRND   37 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~-~V~vlE~~~   37 (328)
                      -.|+|+|+|..|+.++..++..|. +|.+.+.++
T Consensus        29 ~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~   62 (174)
T d1p0fa2          29 STCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHK   62 (174)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCG
T ss_pred             CEEEEECCCchhHHHHHHHHHcCCceeeccCChH
Confidence            468999999999999999999994 788888643

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=89.87  E-value=0.19  Score=36.53  Aligned_cols=33  Identities=18%  Similarity=0.154  Sum_probs=27.5

Q ss_pred             ccEEEECCChhHHHHHHhhhhCC-CeEEEeccCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDG-LKVLHMDRND   37 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G-~~V~vlE~~~   37 (328)
                      -.|+|+|+|..|++++..++..| .+|++++.++
T Consensus        30 ~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~   63 (175)
T d1cdoa2          30 STCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNP   63 (175)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCG
T ss_pred             CEEEEEecCCccchHHHHHHHHhhchheeecchH
Confidence            35889999999999999999887 4688888754

>d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=89.60  E-value=0.18  Score=38.24  Aligned_cols=33  Identities=21%  Similarity=0.316  Sum_probs=27.3

Q ss_pred             ccEEEECCChhHHHHHHhhh--------------------hCC-CeEEEeccCC
Q 020312            5 YDVIVLGTGLKECILSGLLS--------------------VDG-LKVLHMDRND   37 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~--------------------~~G-~~V~vlE~~~   37 (328)
                      .+|+|||+|-.++=||..|+                    +.| .+|.++-|+.
T Consensus        40 k~VvVIGgGNvAlD~AR~ll~~~~~l~~tdi~~~~l~~l~r~~~~~V~iv~RRg   93 (216)
T d1lqta1          40 ARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRG   93 (216)
T ss_dssp             SEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSC
T ss_pred             ceEEEECCCchhHhhhhhhccCHhhhccCCCcHHHHHHHhhcCCceEEEEEECC
Confidence            58999999999999998876                    455 5799997744

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=89.51  E-value=0.084  Score=37.80  Aligned_cols=25  Identities=24%  Similarity=0.209  Sum_probs=21.9

Q ss_pred             CcccEEEECC-ChhHHHHHHhhhhCC
Q 020312            3 EEYDVIVLGT-GLKECILSGLLSVDG   27 (328)
Q Consensus         3 ~~~dvvIvG~-G~aGl~aA~~L~~~G   27 (328)
                      ++.+|+|||| |..|-++|+.|++.+
T Consensus         2 ~p~KV~IiGA~G~VG~~la~~l~~~~   27 (154)
T d5mdha1           2 EPIRVLVTGAAGQIAYSLLYSIGNGS   27 (154)
T ss_dssp             CCEEEEESSTTSHHHHTTHHHHHTTT
T ss_pred             CceEEEEECCCCHHHHHHHHHHHHHH
Confidence            5689999995 999999999998754

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=89.49  E-value=0.36  Score=35.67  Aligned_cols=47  Identities=17%  Similarity=0.159  Sum_probs=34.3

Q ss_pred             HHHHHcCcEEEcCcceeEEEecCCCcEEEEEe-cCc--eEEcCEEEECCCC
Q 020312          240 RLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGE--TAKCKKVVCDPSY  287 (328)
Q Consensus       240 ~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~-~g~--~~~ad~vV~~~~~  287 (328)
                      +.+++.|+++++++.|++|+.+ ++.++.... +++  ++.+|.+|.+++.
T Consensus        64 ~~l~~~gi~v~~~~~V~~i~~~-~~~v~~~~~~~g~~~~~~~D~li~a~G~  113 (198)
T d1nhpa1          64 EKMESRGVNVFSNTEITAIQPK-EHQVTVKDLVSGEERVENYDKLIISPGA  113 (198)
T ss_dssp             HHHHHTTCEEEETEEEEEEETT-TTEEEEEETTTCCEEEEECSEEEECCCE
T ss_pred             HHHHHCCcEEEEeeceeeEeec-cccceeeecccccccccccceeeEeecc
Confidence            3467789999999999999977 555443333 443  4789999887654

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.17  E-value=0.25  Score=35.41  Aligned_cols=33  Identities=18%  Similarity=0.049  Sum_probs=30.6

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~   37 (328)
                      ..|+|+|-|..|-.+|..|...|-+|+|.|..+
T Consensus        25 k~v~V~GyG~iG~g~A~~~rg~G~~V~v~e~dp   57 (163)
T d1li4a1          25 KVAVVAGYGDVGKGCAQALRGFGARVIITEIDP   57 (163)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CEEEEeccccccHHHHHHHHhCCCeeEeeeccc
Confidence            578999999999999999999999999999854

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=89.04  E-value=0.16  Score=36.90  Aligned_cols=34  Identities=26%  Similarity=0.274  Sum_probs=27.7

Q ss_pred             cccEEEECCChhHHHHHHhhhhCC-CeEEEeccCC
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDG-LKVLHMDRND   37 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G-~~V~vlE~~~   37 (328)
                      .-.|+|+|+|..|+.++..++..| ..|++.+.++
T Consensus        33 g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~   67 (172)
T d1h2ba2          33 GAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKE   67 (172)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSH
T ss_pred             CCEEEEeCCChHHHHHHHHHHhhcCcccccccchh
Confidence            356899999999999999988888 5677777743

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

Probab=88.90  E-value=0.17  Score=41.15  Aligned_cols=33  Identities=24%  Similarity=0.226  Sum_probs=29.2

Q ss_pred             ccEEEECC-ChhHHHHHHhhhhCCCeEEEeccCC
Q 020312            5 YDVIVLGT-GLKECILSGLLSVDGLKVLHMDRND   37 (328)
Q Consensus         5 ~dvvIvG~-G~aGl~aA~~L~~~G~~V~vlE~~~   37 (328)
                      ++|+|+|| |-.|-..+.+|.++|++|+++++-.
T Consensus         1 MKiLItG~tGfIG~~l~~~L~~~g~~V~~~d~~~   34 (338)
T d1udca_           1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLC   34 (338)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCC
Confidence            46999998 8889999999999999999998643

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=88.89  E-value=0.25  Score=35.94  Aligned_cols=33  Identities=18%  Similarity=0.161  Sum_probs=28.2

Q ss_pred             ccEEEECCChhHHHHHHhhhhCC-CeEEEeccCC
Q 020312            5 YDVIVLGTGLKECILSGLLSVDG-LKVLHMDRND   37 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G-~~V~vlE~~~   37 (328)
                      --|+|+|+|-.|++++..++..| .+|++.+.++
T Consensus        30 dtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~   63 (176)
T d2jhfa2          30 STCAVFGLGGVGLSVIMGCKAAGAARIIGVDINK   63 (176)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCG
T ss_pred             CEEEEECCCCcHHHHHHHHHHcCCceEEeecCcH
Confidence            35899999999999999999998 6888888643

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=88.89  E-value=0.23  Score=35.55  Aligned_cols=45  Identities=16%  Similarity=0.095  Sum_probs=32.6

Q ss_pred             HHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEecC--ceEEcCEEEECCC
Q 020312          238 FARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEG--ETAKCKKVVCDPS  286 (328)
Q Consensus       238 l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~~g--~~~~ad~vV~~~~  286 (328)
                      +...++..|+++..++.|.+|..  +|..  +..+|  +.+.||.||++++
T Consensus       114 ~~~~~~~~gv~~~~~~~v~~i~~--~gv~--~~~~g~e~~i~aD~Vv~A~G  160 (162)
T d1ps9a2         114 HRTTLLSRGVKMIPGVSYQKIDD--DGLH--VVINGETQVLAVDNVVICAG  160 (162)
T ss_dssp             HHHHHHHTTCEEECSCEEEEEET--TEEE--EEETTEEEEECCSEEEECCC
T ss_pred             HHHHHhhCCeEEEeeeEEEEEcC--CCCE--EecCCeEEEEECCEEEECCC
Confidence            34557889999999999999852  3332  23333  3589999998876

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=88.83  E-value=0.17  Score=39.55  Aligned_cols=37  Identities=16%  Similarity=0.123  Sum_probs=27.5

Q ss_pred             CCCcccEEEECCCh-hHHHHHHhhhhCCCeEEEeccCC
Q 020312            1 MDEEYDVIVLGTGL-KECILSGLLSVDGLKVLHMDRND   37 (328)
Q Consensus         1 ~~~~~dvvIvG~G~-aGl~aA~~L~~~G~~V~vlE~~~   37 (328)
                      |.+..-++|.||+= .|..+|..|+++|.+|++..+++
T Consensus         1 ~L~gK~alITGas~GIG~aiA~~la~~Ga~V~~~~r~~   38 (260)
T d1x1ta1           1 MLKGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGD   38 (260)
T ss_dssp             CCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSC
T ss_pred             CCCcCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            34444455556644 48899999999999999998754

>d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=88.81  E-value=0.18  Score=38.79  Aligned_cols=33  Identities=24%  Similarity=0.339  Sum_probs=28.3

Q ss_pred             cEEEECCChh-HHHHHHhhhhCCCeEEEeccCCC
Q 020312            6 DVIVLGTGLK-ECILSGLLSVDGLKVLHMDRNDY   38 (328)
Q Consensus         6 dvvIvG~G~a-Gl~aA~~L~~~G~~V~vlE~~~~   38 (328)
                      +|+|.||+-+ |...|..|+++|++|.+++++..
T Consensus         4 kVlITGas~GIG~aia~~l~~~G~~V~~~~~~~~   37 (235)
T d1ooea_           4 KVIVYGGKGALGSAILEFFKKNGYTVLNIDLSAN   37 (235)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCC
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCch
Confidence            5889998655 99999999999999999988643

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=88.60  E-value=0.14  Score=37.12  Aligned_cols=33  Identities=12%  Similarity=0.234  Sum_probs=27.9

Q ss_pred             ccEEEECC-ChhHHHHHHhhhhCC-CeEEEeccCC
Q 020312            5 YDVIVLGT-GLKECILSGLLSVDG-LKVLHMDRND   37 (328)
Q Consensus         5 ~dvvIvG~-G~aGl~aA~~L~~~G-~~V~vlE~~~   37 (328)
                      -.|+|+|+ |..|+.++..++..| .+|++.+.++
T Consensus        29 ~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~   63 (170)
T d1jvba2          29 KTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVRE   63 (170)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSH
T ss_pred             CEEEEEeccccceeeeeecccccccccccccccch
Confidence            46999994 999999999988888 5899998753

>d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Alpha-glucosidase AglA
species: Thermotoga maritima [TaxId: 2336]

Probab=87.90  E-value=0.22  Score=36.16  Aligned_cols=34  Identities=24%  Similarity=0.250  Sum_probs=25.0

Q ss_pred             CcccEEEECCChhHHHHHH---hhhhC---CCeEEEeccC
Q 020312            3 EEYDVIVLGTGLKECILSG---LLSVD---GLKVLHMDRN   36 (328)
Q Consensus         3 ~~~dvvIvG~G~aGl~aA~---~L~~~---G~~V~vlE~~   36 (328)
                      +.++|+|||||-.|.+++.   .+...   +.++++++.+
T Consensus         1 p~mKI~iIGaGsvg~t~~~~~~l~~~~~l~~~eivL~Did   40 (171)
T d1obba1           1 PSVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDID   40 (171)
T ss_dssp             CCCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSC
T ss_pred             CCcEEEEECCCHHHhHHHHHHHHHhccccCCCEEEEEeCC
Confidence            3579999999999977654   22222   4689999985

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=87.78  E-value=0.31  Score=37.36  Aligned_cols=34  Identities=15%  Similarity=0.020  Sum_probs=28.5

Q ss_pred             ccEEEECCCh-hHHHHHHhhhhCCCeEEEeccCCC
Q 020312            5 YDVIVLGTGL-KECILSGLLSVDGLKVLHMDRNDY   38 (328)
Q Consensus         5 ~dvvIvG~G~-aGl~aA~~L~~~G~~V~vlE~~~~   38 (328)
                      ..|+|.||+- .|..+|..|+++|.+|.+++++..
T Consensus         3 K~vlITGas~GIG~a~a~~l~~~G~~V~~~~~~~~   37 (236)
T d1dhra_           3 RRVLVYGGRGALGSRCVQAFRARNWWVASIDVVEN   37 (236)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCcc
Confidence            4688999854 599999999999999999987543

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=87.77  E-value=0.31  Score=38.24  Aligned_cols=36  Identities=8%  Similarity=-0.006  Sum_probs=29.5

Q ss_pred             CCcccEEEECC-C--hhHHHHHHhhhhCCCeEEEeccCC
Q 020312            2 DEEYDVIVLGT-G--LKECILSGLLSVDGLKVLHMDRND   37 (328)
Q Consensus         2 ~~~~dvvIvG~-G--~aGl~aA~~L~~~G~~V~vlE~~~   37 (328)
                      .+...++|.|| |  =.|.++|..|+++|.+|++..+++
T Consensus         3 L~gK~alITGaag~~GIG~AiA~~la~~Ga~V~i~~r~~   41 (274)
T d2pd4a1           3 LKGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNE   41 (274)
T ss_dssp             TTTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESST
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            34566889986 3  369999999999999999999864

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=87.63  E-value=0.23  Score=34.08  Aligned_cols=31  Identities=16%  Similarity=0.184  Sum_probs=26.5

Q ss_pred             cEEEECCChhHHHHHHhhhhCCCeEEEeccCCC
Q 020312            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (328)
Q Consensus         6 dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~   38 (328)
                      .++|+|.|-.|...|..|.  |.+|.|+|..+.
T Consensus         2 HivI~G~g~~g~~l~~~L~--~~~i~vi~~d~~   32 (129)
T d2fy8a1           2 HVVICGWSESTLECLRELR--GSEVFVLAEDEN   32 (129)
T ss_dssp             CEEEESCCHHHHHHHHTSC--GGGEEEEESCTT
T ss_pred             EEEEECCCHHHHHHHHHHc--CCCCEEEEcchH
Confidence            5899999999999999995  677888987553

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

Probab=87.44  E-value=0.27  Score=38.38  Aligned_cols=36  Identities=8%  Similarity=0.105  Sum_probs=28.6

Q ss_pred             CCCcccEEEECC-Ch--hHHHHHHhhhhCCCeEEEeccC
Q 020312            1 MDEEYDVIVLGT-GL--KECILSGLLSVDGLKVLHMDRN   36 (328)
Q Consensus         1 ~~~~~dvvIvG~-G~--aGl~aA~~L~~~G~~V~vlE~~   36 (328)
                      |.+...++|.|+ |-  .|..+|..|+++|.+|++..++
T Consensus         3 ~l~gK~~lItGaag~~GIG~aiA~~la~~Ga~Vil~~~~   41 (268)
T d2h7ma1           3 LLDGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFD   41 (268)
T ss_dssp             TTTTCEEEECCCSSTTCHHHHHHHHHHHTTCEEEEEECS
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHHcCCEEEEEeCC
Confidence            445667889985 43  5888999999999999998764

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.03  E-value=0.3  Score=37.73  Aligned_cols=32  Identities=13%  Similarity=0.120  Sum_probs=26.3

Q ss_pred             cEEEECCChh-HHHHHHhhhhCCCeEEEeccCC
Q 020312            6 DVIVLGTGLK-ECILSGLLSVDGLKVLHMDRND   37 (328)
Q Consensus         6 dvvIvG~G~a-Gl~aA~~L~~~G~~V~vlE~~~   37 (328)
                      -++|.||+=+ |.++|..|+++|.+|.+..++.
T Consensus         7 valITGas~GIG~aia~~la~~G~~V~~~~r~~   39 (248)
T d2o23a1           7 VAVITGGASGLGLATAERLVGQGASAVLLDLPN   39 (248)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEECTT
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCh
Confidence            3567777654 8899999999999999998865

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=86.94  E-value=0.36  Score=35.14  Aligned_cols=26  Identities=19%  Similarity=0.160  Sum_probs=21.9

Q ss_pred             CCcccEEEECC-ChhHHHHHHhhhhCC
Q 020312            2 DEEYDVIVLGT-GLKECILSGLLSVDG   27 (328)
Q Consensus         2 ~~~~dvvIvG~-G~aGl~aA~~L~~~G   27 (328)
                      ++..+|+|+|| |-.|-++|+.|++..
T Consensus        22 k~~~kV~I~GA~G~Ig~~l~~~La~g~   48 (175)
T d7mdha1          22 KKLVNIAVSGAAGMISNHLLFKLASGE   48 (175)
T ss_dssp             CCCEEEEEETTTSHHHHHHHHHHHHTT
T ss_pred             CCCcEEEEECCCcHHHHHHHHHHHcCc
Confidence            34568999996 999999999999753

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=86.81  E-value=0.33  Score=39.53  Aligned_cols=34  Identities=29%  Similarity=0.225  Sum_probs=30.4

Q ss_pred             cccEEEECC-ChhHHHHHHhhhhCCCeEEEeccCC
Q 020312            4 EYDVIVLGT-GLKECILSGLLSVDGLKVLHMDRND   37 (328)
Q Consensus         4 ~~dvvIvG~-G~aGl~aA~~L~~~G~~V~vlE~~~   37 (328)
                      ..+|+|.|| |..|...+..|.++|++|.++.++.
T Consensus         8 ~KkILVTG~tGfIGs~lv~~Ll~~g~~V~~~~r~~   42 (356)
T d1rkxa_           8 GKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTA   42 (356)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCC
Confidence            468999995 8999999999999999999998854

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.53  E-value=0.25  Score=41.65  Aligned_cols=34  Identities=26%  Similarity=0.489  Sum_probs=30.5

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCC-eEEEeccCC
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGL-KVLHMDRND   37 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~-~V~vlE~~~   37 (328)
                      +.+|+|||+|-.|.-+|..|+..|. +++|+|...
T Consensus        37 ~~kVlvvG~GglG~ei~k~L~~~Gvg~i~lvD~D~   71 (426)
T d1yovb1          37 TCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDT   71 (426)
T ss_dssp             HCCEEEECSSTTHHHHHHHHHTTTCCCEEEECCCB
T ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCeEEEEECCC
Confidence            4689999999999999999999996 799999754

>d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=86.40  E-value=0.29  Score=37.48  Aligned_cols=32  Identities=19%  Similarity=0.147  Sum_probs=25.8

Q ss_pred             EEEECC-ChhHHHHHHhhhhCCCeEEEeccCCC
Q 020312            7 VIVLGT-GLKECILSGLLSVDGLKVLHMDRNDY   38 (328)
Q Consensus         7 vvIvG~-G~aGl~aA~~L~~~G~~V~vlE~~~~   38 (328)
                      ++|.|| +-.|..+|..|+++|.+|++.+++..
T Consensus         4 alITGas~GIG~aiA~~la~~Ga~V~i~~~~~~   36 (241)
T d1uaya_           4 ALVTGGASGLGRAAALALKARGYRVVVLDLRRE   36 (241)
T ss_dssp             EEEETTTSHHHHHHHHHHHHHTCEEEEEESSCC
T ss_pred             EEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcc
Confidence            455566 44588999999999999999998654

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=86.28  E-value=0.38  Score=35.87  Aligned_cols=31  Identities=29%  Similarity=0.368  Sum_probs=29.1

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEecc
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDR   35 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~   35 (328)
                      ..|+|-|.|-.|..+|.+|.+.|.+|++.|-
T Consensus        28 k~v~IqG~G~VG~~~A~~L~~~Gakvvv~d~   58 (201)
T d1c1da1          28 LTVLVQGLGAVGGSLASLAAEAGAQLLVADT   58 (201)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECS
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEecc
Confidence            5799999999999999999999999998875

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=86.26  E-value=0.36  Score=39.30  Aligned_cols=34  Identities=18%  Similarity=0.224  Sum_probs=30.4

Q ss_pred             CcccEEEECC-ChhHHHHHHhhhhCCCeEEEeccC
Q 020312            3 EEYDVIVLGT-GLKECILSGLLSVDGLKVLHMDRN   36 (328)
Q Consensus         3 ~~~dvvIvG~-G~aGl~aA~~L~~~G~~V~vlE~~   36 (328)
                      ++..|+|+|| |-.|...+..|.++|++|.++=|+
T Consensus         2 ~kktIlVtGatG~iG~~lv~~Ll~~G~~V~~l~R~   36 (350)
T d1xgka_           2 QKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHS   36 (350)
T ss_dssp             CCCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESC
T ss_pred             CCCEEEEECCChHHHHHHHHHHHhCCCeEEEEECC
Confidence            4578999997 999999999999999999999664

>d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.18  E-value=0.49  Score=38.32  Aligned_cols=36  Identities=25%  Similarity=0.183  Sum_probs=30.9

Q ss_pred             CCCcccEEEECC-ChhHHHHHHhhhhCCCeEEEeccCCC
Q 020312            1 MDEEYDVIVLGT-GLKECILSGLLSVDGLKVLHMDRNDY   38 (328)
Q Consensus         1 ~~~~~dvvIvG~-G~aGl~aA~~L~~~G~~V~vlE~~~~   38 (328)
                      |++  +|+|.|| |..|-..+.+|.++|++|++++....
T Consensus         1 M~k--KILITG~tGfIGs~lv~~Ll~~g~~V~~ld~~~~   37 (346)
T d1ek6a_           1 MAE--KVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHN   37 (346)
T ss_dssp             CCS--EEEEETTTSHHHHHHHHHHHHTTCCEEEEECSSS
T ss_pred             CCC--eEEEECCCcHHHHHHHHHHHHCcCEEEEEECCCc
Confidence            553  7999997 99999999999999999999987544

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=86.18  E-value=0.31  Score=38.02  Aligned_cols=34  Identities=18%  Similarity=0.186  Sum_probs=27.2

Q ss_pred             ccEEEECCCh-hHHHHHHhhhhCCCeEEEeccCCC
Q 020312            5 YDVIVLGTGL-KECILSGLLSVDGLKVLHMDRNDY   38 (328)
Q Consensus         5 ~dvvIvG~G~-aGl~aA~~L~~~G~~V~vlE~~~~   38 (328)
                      .-++|.||+= .|..+|..|+++|.+|++..++..
T Consensus        10 K~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~   44 (260)
T d1h5qa_          10 KTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAA   44 (260)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCT
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            3456667755 499999999999999999998653

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.73  E-value=0.37  Score=37.52  Aligned_cols=31  Identities=26%  Similarity=0.289  Sum_probs=26.4

Q ss_pred             cEEEECCChh-HHHHHHhhhhCCCeEEEeccC
Q 020312            6 DVIVLGTGLK-ECILSGLLSVDGLKVLHMDRN   36 (328)
Q Consensus         6 dvvIvG~G~a-Gl~aA~~L~~~G~~V~vlE~~   36 (328)
                      -++|.||+-+ |.++|..|+++|.+|.+..++
T Consensus        12 v~lITGas~GIG~aiA~~la~~G~~Vv~~~r~   43 (257)
T d1xg5a_          12 LALVTGASGGIGAAVARALVQQGLKVVGCART   43 (257)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            3778888655 999999999999999999874

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.41  E-value=0.39  Score=37.03  Aligned_cols=30  Identities=20%  Similarity=0.178  Sum_probs=24.6

Q ss_pred             EEEECCChh-HHHHHHhhhhCCCeEEEeccC
Q 020312            7 VIVLGTGLK-ECILSGLLSVDGLKVLHMDRN   36 (328)
Q Consensus         7 vvIvG~G~a-Gl~aA~~L~~~G~~V~vlE~~   36 (328)
                      ++|.||+-+ |...|..|+++|.+|.+..++
T Consensus        10 ~lITGas~GIG~~ia~~la~~G~~V~l~~r~   40 (244)
T d1yb1a_          10 VLITGAGHGIGRLTAYEFAKLKSKLVLWDIN   40 (244)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             EEEeCCCcHHHHHHHHHHHHCCCEEEEEECC
Confidence            445577654 899999999999999999874

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=85.38  E-value=0.5  Score=36.36  Aligned_cols=32  Identities=25%  Similarity=0.284  Sum_probs=26.5

Q ss_pred             ccEEEECCCh-hHHHHHHhhhhCCCeEEEeccC
Q 020312            5 YDVIVLGTGL-KECILSGLLSVDGLKVLHMDRN   36 (328)
Q Consensus         5 ~dvvIvG~G~-aGl~aA~~L~~~G~~V~vlE~~   36 (328)
                      ..++|.||+- .|..+|..|+++|.+|++..++
T Consensus         6 K~alITGas~GIG~aia~~la~~Ga~V~~~~r~   38 (242)
T d1cyda_           6 LRALVTGAGKGIGRDTVKALHASGAKVVAVTRT   38 (242)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECC
Confidence            4567778754 4899999999999999999875

>d1vkza2 c.30.1.1 (A:4-93) Glycinamide ribonucleotide synthetase (GAR-syn), N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide synthetase (GAR-syn), N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=85.38  E-value=0.46  Score=30.18  Aligned_cols=30  Identities=23%  Similarity=0.335  Sum_probs=26.9

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCCeEEEec
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMD   34 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE   34 (328)
                      ++|+|||+|-=-=+.|+.|++...++.++=
T Consensus         1 MkVLviGsGgREHAia~~l~~s~~~v~~~p   30 (90)
T d1vkza2           1 VRVHILGSGGREHAIGWAFAKQGYEVHFYP   30 (90)
T ss_dssp             CEEEEEECSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHhcCCCeEEEec
Confidence            479999999999999999999998888773

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=85.32  E-value=0.4  Score=37.12  Aligned_cols=30  Identities=20%  Similarity=0.297  Sum_probs=24.3

Q ss_pred             EEEECCCh-hHHHHHHhhhhCCCeEEEeccC
Q 020312            7 VIVLGTGL-KECILSGLLSVDGLKVLHMDRN   36 (328)
Q Consensus         7 vvIvG~G~-aGl~aA~~L~~~G~~V~vlE~~   36 (328)
                      ++|.||+= .|..+|..|+++|.+|++..++
T Consensus        13 alITGas~GIG~a~a~~la~~Ga~V~~~~r~   43 (251)
T d2c07a1          13 ALVTGAGRGIGREIAKMLAKSVSHVICISRT   43 (251)
T ss_dssp             EEEESTTSHHHHHHHHHHTTTSSEEEEEESS
T ss_pred             EEEeCCCCHHHHHHHHHHHHcCCEEEEEECC
Confidence            44557743 4889999999999999999874

>d2ax3a2 c.104.1.1 (A:1-211) Hypothetical protein TM0922, N-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: YjeF N-terminal domain-like
superfamily: YjeF N-terminal domain-like
family: YjeF N-terminal domain-like
domain: Hypothetical protein TM0922, N-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=85.28  E-value=0.4  Score=36.10  Aligned_cols=29  Identities=17%  Similarity=0.078  Sum_probs=24.9

Q ss_pred             EEEECCChh---HHHHHHhhhhCCCeEEEecc
Q 020312            7 VIVLGTGLK---ECILSGLLSVDGLKVLHMDR   35 (328)
Q Consensus         7 vvIvG~G~a---Gl~aA~~L~~~G~~V~vlE~   35 (328)
                      ++++|.|-.   |+.+|.+|.++|++|.++--
T Consensus        44 lvl~G~GNNGGDGl~~Ar~L~~~g~~V~v~~~   75 (211)
T d2ax3a2          44 LVLCGGGNNGGDGFVVARNLLGVVKDVLVVFL   75 (211)
T ss_dssp             EEEECSSHHHHHHHHHHHHHTTTSSEEEEEEC
T ss_pred             EEEECCCCCchhHHHHHHHHHhcCCeeEEEec
Confidence            467888876   89999999999999999864

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=85.19  E-value=0.4  Score=37.54  Aligned_cols=31  Identities=23%  Similarity=0.109  Sum_probs=25.2

Q ss_pred             cEEEECCCh-hHHHHHHhhhhCCCeEEEeccC
Q 020312            6 DVIVLGTGL-KECILSGLLSVDGLKVLHMDRN   36 (328)
Q Consensus         6 dvvIvG~G~-aGl~aA~~L~~~G~~V~vlE~~   36 (328)
                      -++|.||+= .|..+|..|+++|.+|++.+++
T Consensus         8 valITGas~GIG~aia~~la~~Ga~V~i~~r~   39 (268)
T d2bgka1           8 VAIITGGAGGIGETTAKLFVRYGAKVVIADIA   39 (268)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             EEEEeCCCcHHHHHHHHHHHHCCCEEEEEECC
Confidence            456667644 4899999999999999999874

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.13  E-value=0.28  Score=38.47  Aligned_cols=31  Identities=26%  Similarity=0.228  Sum_probs=26.2

Q ss_pred             cEEEECCChh-HHHHHHhhhhCCCeEEEeccC
Q 020312            6 DVIVLGTGLK-ECILSGLLSVDGLKVLHMDRN   36 (328)
Q Consensus         6 dvvIvG~G~a-Gl~aA~~L~~~G~~V~vlE~~   36 (328)
                      .++|.||+=+ |.++|..|+++|.+|.+..++
T Consensus        16 ~alITGassGIG~aiA~~la~~G~~Vil~~r~   47 (269)
T d1xu9a_          16 KVIVTGASKGIGREMAYHLAKMGAHVVVTARS   47 (269)
T ss_dssp             EEEESSCSSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             EEEEeCCCcHHHHHHHHHHHHCCCEEEEEECC
Confidence            4777787654 999999999999999999874

>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sulfolipid biosynthesis protein SQD1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=85.11  E-value=0.35  Score=40.07  Aligned_cols=30  Identities=27%  Similarity=0.254  Sum_probs=27.6

Q ss_pred             ccEEEECC-ChhHHHHHHhhhhCCCeEEEec
Q 020312            5 YDVIVLGT-GLKECILSGLLSVDGLKVLHMD   34 (328)
Q Consensus         5 ~dvvIvG~-G~aGl~aA~~L~~~G~~V~vlE   34 (328)
                      ++|+|.|| |..|...+.+|.++|++|+++|
T Consensus         2 ~kILVTGatGfiG~~lv~~Ll~~g~~V~~iD   32 (393)
T d1i24a_           2 SRVMVIGGDGYCGWATALHLSKKNYEVCIVD   32 (393)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCcCEEEEEe
Confidence            47999998 8899999999999999999996

>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=85.03  E-value=2  Score=28.92  Aligned_cols=51  Identities=16%  Similarity=0.033  Sum_probs=37.0

Q ss_pred             HHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe-c---C---ceEEcCEEEECC
Q 020312          234 LPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-E---G---ETAKCKKVVCDP  285 (328)
Q Consensus       234 l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~-~---g---~~~~ad~vV~~~  285 (328)
                      +.+.+.+..+..++.++.|+.|.+|.-+ ++.+.+|+. +   +   +++.+|-|++.+
T Consensus        68 ~~~~~~~~~~~~~i~~~~~~~v~~i~G~-~~~v~~v~l~~~~~~e~~~~l~~dgvFv~i  125 (126)
T d1trba2          68 LIKRLMDKVENGNIILHTNRTLEEVTGD-QMGVTGVRLRDTQNSDNIESLDVAGLFVAI  125 (126)
T ss_dssp             HHHHHHHHHHTSSEEEECSCEEEEEEEC-SSSEEEEEEECCTTCCCCEEEECSEEEECS
T ss_pred             HHHHHHHhhcccceeEecceEEEEEECC-CCceEEEEEEECCCCceEEEEECCEEEEEe
Confidence            4555555555567899999999999987 667888775 2   2   358889887654

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=85.01  E-value=0.42  Score=37.05  Aligned_cols=32  Identities=22%  Similarity=0.147  Sum_probs=26.4

Q ss_pred             ccEEEECCCh-hHHHHHHhhhhCCCeEEEeccC
Q 020312            5 YDVIVLGTGL-KECILSGLLSVDGLKVLHMDRN   36 (328)
Q Consensus         5 ~dvvIvG~G~-aGl~aA~~L~~~G~~V~vlE~~   36 (328)
                      .-++|.||+= .|.++|..|+++|.+|++..++
T Consensus         6 K~~lITGas~GIG~aia~~la~~Ga~V~i~~r~   38 (251)
T d1vl8a_           6 RVALVTGGSRGLGFGIAQGLAEAGCSVVVASRN   38 (251)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            3467888754 3889999999999999999874

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.76  E-value=0.45  Score=36.66  Aligned_cols=31  Identities=26%  Similarity=0.240  Sum_probs=24.5

Q ss_pred             cEEEE-CC-ChhHHHHHHhhhhCCCeEEEeccC
Q 020312            6 DVIVL-GT-GLKECILSGLLSVDGLKVLHMDRN   36 (328)
Q Consensus         6 dvvIv-G~-G~aGl~aA~~L~~~G~~V~vlE~~   36 (328)
                      +++|| || +-.|..+|..|+++|.+|++..++
T Consensus         7 K~alITGas~GIG~aia~~la~~G~~Vi~~~r~   39 (245)
T d2ag5a1           7 KVIILTAAAQGIGQAAALAFAREGAKVIATDIN   39 (245)
T ss_dssp             CEEEESSTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCC
Confidence            44444 54 445999999999999999999875

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=84.61  E-value=0.47  Score=36.64  Aligned_cols=33  Identities=18%  Similarity=0.148  Sum_probs=26.4

Q ss_pred             ccEEEECCCh-hHHHHHHhhhhCCCeEEEeccCC
Q 020312            5 YDVIVLGTGL-KECILSGLLSVDGLKVLHMDRND   37 (328)
Q Consensus         5 ~dvvIvG~G~-aGl~aA~~L~~~G~~V~vlE~~~   37 (328)
                      .-++|.||+- .|..+|..|+++|.+|.+..+++
T Consensus         6 K~alITGas~GIG~aia~~la~~G~~V~~~~~~~   39 (248)
T d2d1ya1           6 KGVLVTGGARGIGRAIAQAFAREGALVALCDLRP   39 (248)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESST
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            3466777544 48999999999999999998864

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.60  E-value=0.45  Score=36.64  Aligned_cols=32  Identities=25%  Similarity=0.298  Sum_probs=26.7

Q ss_pred             ccEEEECCChh-HHHHHHhhhhCCCeEEEeccC
Q 020312            5 YDVIVLGTGLK-ECILSGLLSVDGLKVLHMDRN   36 (328)
Q Consensus         5 ~dvvIvG~G~a-Gl~aA~~L~~~G~~V~vlE~~   36 (328)
                      ..++|.||+=. |..+|..|+++|.+|++..++
T Consensus         8 K~~lITGas~GIG~aia~~la~~G~~V~~~~r~   40 (244)
T d1pr9a_           8 RRVLVTGAGKGIGRGTVQALHATGARVVAVSRT   40 (244)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECC
Confidence            46777787654 899999999999999999874

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=84.42  E-value=0.45  Score=37.02  Aligned_cols=32  Identities=22%  Similarity=0.186  Sum_probs=25.9

Q ss_pred             ccEEEECCCh-hHHHHHHhhhhCCCeEEEeccC
Q 020312            5 YDVIVLGTGL-KECILSGLLSVDGLKVLHMDRN   36 (328)
Q Consensus         5 ~dvvIvG~G~-aGl~aA~~L~~~G~~V~vlE~~   36 (328)
                      .-++|.||+- .|..+|..|+++|.+|.+..++
T Consensus         6 K~alITGas~GIG~aia~~la~~Ga~V~~~~r~   38 (260)
T d1zema1           6 KVCLVTGAGGNIGLATALRLAEEGTAIALLDMN   38 (260)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            3466778754 4889999999999999999874

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=84.39  E-value=0.52  Score=36.00  Aligned_cols=33  Identities=27%  Similarity=0.342  Sum_probs=27.8

Q ss_pred             cccEEEECCCh-hHHHHHHhhhhCCCeEEEeccC
Q 020312            4 EYDVIVLGTGL-KECILSGLLSVDGLKVLHMDRN   36 (328)
Q Consensus         4 ~~dvvIvG~G~-aGl~aA~~L~~~G~~V~vlE~~   36 (328)
                      ..-++|.||+= .|..+|..|+++|.+|.+..++
T Consensus         4 gK~~lVTGas~GIG~aia~~l~~~Ga~V~~~~r~   37 (234)
T d1o5ia_           4 DKGVLVLAASRGIGRAVADVLSQEGAEVTICARN   37 (234)
T ss_dssp             TCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECC
Confidence            45678888754 4999999999999999999875

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=84.14  E-value=0.78  Score=32.52  Aligned_cols=48  Identities=15%  Similarity=0.036  Sum_probs=35.6

Q ss_pred             HHHHcCcEEEcCcceeEEEecCCCcEEEEEecCceEEcCEEEECCCCCcchh
Q 020312          241 LSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKV  292 (328)
Q Consensus       241 ~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~~g~~~~ad~vV~~~~~~~~~~  292 (328)
                      ..++.|+++++++.|+++..+  .++  +..+++++.+|.+|.+++..|..+
T Consensus        61 ~~~~~~v~~~~~~~v~~i~~~--~~~--~~~~~~~i~~D~li~a~G~~~~~~  108 (167)
T d1xhca1          61 WYRKRGIEIRLAEEAKLIDRG--RKV--VITEKGEVPYDTLVLATGAPNVDL  108 (167)
T ss_dssp             HHHHHTEEEECSCCEEEEETT--TTE--EEESSCEEECSEEEECCCEECCHH
T ss_pred             HHHhccceeeeeccccccccc--ccc--ccccccccccceeEEEEEecCCch
Confidence            356679999999999999744  332  345778899999998877655433

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=84.13  E-value=0.48  Score=36.86  Aligned_cols=32  Identities=22%  Similarity=0.257  Sum_probs=26.1

Q ss_pred             cEEEECCChh-HHHHHHhhhhCCCeEEEeccCC
Q 020312            6 DVIVLGTGLK-ECILSGLLSVDGLKVLHMDRND   37 (328)
Q Consensus         6 dvvIvG~G~a-Gl~aA~~L~~~G~~V~vlE~~~   37 (328)
                      -++|.||+-. |..+|..|+++|.+|.+.+++.
T Consensus         6 ~alITGas~GIG~aia~~la~~Ga~V~i~~r~~   38 (258)
T d1iy8a_           6 VVLITGGGSGLGRATAVRLAAEGAKLSLVDVSS   38 (258)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            4566687654 8899999999999999998743

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.07  E-value=0.48  Score=36.71  Aligned_cols=31  Identities=26%  Similarity=0.259  Sum_probs=25.3

Q ss_pred             EEEECCCh-hHHHHHHhhhhCCCeEEEeccCC
Q 020312            7 VIVLGTGL-KECILSGLLSVDGLKVLHMDRND   37 (328)
Q Consensus         7 vvIvG~G~-aGl~aA~~L~~~G~~V~vlE~~~   37 (328)
                      ++|.||+- .|.++|..|+++|.+|.+..++.
T Consensus         6 alITGas~GIG~aia~~la~~Ga~V~i~~r~~   37 (254)
T d2gdza1           6 ALVTGAAQGIGRAFAEALLLKGAKVALVDWNL   37 (254)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            45667744 49999999999999999998753

>d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Malate oxidoreductase (malic enzyme)
species: Thermotoga maritima [TaxId: 2336]

Probab=84.04  E-value=0.47  Score=35.81  Aligned_cols=35  Identities=29%  Similarity=0.339  Sum_probs=30.4

Q ss_pred             cccEEEECCChhHHHHHHhhhhCC-CeEEEeccCCC
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDG-LKVLHMDRNDY   38 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G-~~V~vlE~~~~   38 (328)
                      +-+++|.|+|-+|+.+|..|.+.| .++.++|+...
T Consensus        26 d~riv~~GAGsAg~gia~~l~~~~~~~i~~~D~~GL   61 (222)
T d1vl6a1          26 EVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKGI   61 (222)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEE
T ss_pred             hcEEEEEChHHHHHHHHHHHHHhcccceEeecceeE
Confidence            468999999999999999999888 56999998643

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=83.98  E-value=0.49  Score=36.70  Aligned_cols=31  Identities=32%  Similarity=0.345  Sum_probs=25.4

Q ss_pred             cE-EEECCCh-hHHHHHHhhhhCCCeEEEeccC
Q 020312            6 DV-IVLGTGL-KECILSGLLSVDGLKVLHMDRN   36 (328)
Q Consensus         6 dv-vIvG~G~-aGl~aA~~L~~~G~~V~vlE~~   36 (328)
                      +| +|.||+- .|..+|..|+++|.+|++..++
T Consensus         2 KValITGas~GIG~aia~~la~~Ga~V~~~~r~   34 (255)
T d1gega_           2 KVALVTGAGQGIGKAIALRLVKDGFAVAIADYN   34 (255)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CEEEEcCCccHHHHHHHHHHHHCCCEEEEEECC
Confidence            56 4557754 4999999999999999999874

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=83.96  E-value=0.4  Score=36.79  Aligned_cols=39  Identities=23%  Similarity=0.154  Sum_probs=29.5

Q ss_pred             ccEEEECCCh-hHHHHHHhhhhCCCeEEEeccCCCCCCcc
Q 020312            5 YDVIVLGTGL-KECILSGLLSVDGLKVLHMDRNDYYGGES   43 (328)
Q Consensus         5 ~dvvIvG~G~-aGl~aA~~L~~~G~~V~vlE~~~~~GG~~   43 (328)
                      .-++|.||+- .|..+|..|+++|.+|.+..++.......
T Consensus         8 K~~lITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~   47 (237)
T d1uzma1           8 RSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAPKGL   47 (237)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSCCCTTS
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcchhcCc
Confidence            3455666654 48899999999999999999976554433

>d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Leishmania major [TaxId: 5664]

Probab=83.85  E-value=0.58  Score=36.70  Aligned_cols=32  Identities=16%  Similarity=0.120  Sum_probs=25.4

Q ss_pred             cEEEE-CC-ChhHHHHHHhhhhCCCeEEEeccCC
Q 020312            6 DVIVL-GT-GLKECILSGLLSVDGLKVLHMDRND   37 (328)
Q Consensus         6 dvvIv-G~-G~aGl~aA~~L~~~G~~V~vlE~~~   37 (328)
                      .|+|| || +-.|..+|..|+++|.+|.+..+++
T Consensus         3 pVAlITGas~GIG~aiA~~la~~Ga~V~i~~~~~   36 (284)
T d1e7wa_           3 PVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRS   36 (284)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCC
Confidence            47777 55 4569999999999999999987643

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=83.84  E-value=0.41  Score=34.62  Aligned_cols=31  Identities=19%  Similarity=0.140  Sum_probs=25.6

Q ss_pred             ccEEEECCChhHHHHHHhhhhCCC-eEEEecc
Q 020312            5 YDVIVLGTGLKECILSGLLSVDGL-KVLHMDR   35 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~~~G~-~V~vlE~   35 (328)
                      -.|+|+|+|-.|+.++..++..|. .|++.+.
T Consensus        30 ~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~   61 (176)
T d2fzwa2          30 SVCAVFGLGGVGLAVIMGCKVAGASRIIGVDI   61 (176)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECS
T ss_pred             CEEEEecchhHHHHHHHHHHHHhcCceEEEcc
Confidence            357899999999999999999995 5666665

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

Probab=83.77  E-value=0.58  Score=37.89  Aligned_cols=34  Identities=29%  Similarity=0.283  Sum_probs=29.0

Q ss_pred             CCcccEEEECC-ChhHHHHHHhhhhCCCeEEEecc
Q 020312            2 DEEYDVIVLGT-GLKECILSGLLSVDGLKVLHMDR   35 (328)
Q Consensus         2 ~~~~dvvIvG~-G~aGl~aA~~L~~~G~~V~vlE~   35 (328)
                      ++...|+|.|| |..|...+.+|.++|++|..+-+
T Consensus         9 ~~gk~VlVTG~sGfIGs~l~~~Ll~~G~~V~~~vR   43 (342)
T d1y1pa1           9 PEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTAR   43 (342)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEES
T ss_pred             CCcCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeC
Confidence            44468999998 88999999999999999987655

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=83.75  E-value=0.43  Score=37.04  Aligned_cols=32  Identities=16%  Similarity=0.183  Sum_probs=26.2

Q ss_pred             ccEEEECCCh-hHHHHHHhhhhCCCeEEEeccC
Q 020312            5 YDVIVLGTGL-KECILSGLLSVDGLKVLHMDRN   36 (328)
Q Consensus         5 ~dvvIvG~G~-aGl~aA~~L~~~G~~V~vlE~~   36 (328)
                      .-++|.||+= .|..+|..|+++|.+|.+..++
T Consensus         6 K~alVTGas~GIG~aia~~la~~Ga~V~~~~r~   38 (256)
T d1k2wa_           6 KTALITGSARGIGRAFAEAYVREGARVAIADIN   38 (256)
T ss_dssp             EEEEEETCSSHHHHHHHHHHHHTTEEEEEEESC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            4566778754 4899999999999999999874

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=83.72  E-value=0.51  Score=36.59  Aligned_cols=33  Identities=21%  Similarity=0.172  Sum_probs=27.0

Q ss_pred             ccEEEECCChh-HHHHHHhhhhCCCeEEEeccCC
Q 020312            5 YDVIVLGTGLK-ECILSGLLSVDGLKVLHMDRND   37 (328)
Q Consensus         5 ~dvvIvG~G~a-Gl~aA~~L~~~G~~V~vlE~~~   37 (328)
                      .-++|.||+-. |..+|..|+++|.+|++..++.
T Consensus         6 K~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~   39 (254)
T d1hdca_           6 KTVIITGGARGLGAEAARQAVAAGARVVLADVLD   39 (254)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            34678887654 8999999999999999998743

>d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=83.40  E-value=3.5  Score=27.63  Aligned_cols=51  Identities=20%  Similarity=0.223  Sum_probs=37.4

Q ss_pred             HHHHHHHHHHc-CcEEEcCcceeEEEecCCCcEEEEEe----cCc--eEEcCEEEECCC
Q 020312          235 PQAFARLSAVY-GGTYMLNKPECKVEFDEEGKVVGVTS----EGE--TAKCKKVVCDPS  286 (328)
Q Consensus       235 ~~~l~~~~~~~-G~~i~~~~~V~~I~~~~~~~v~~v~~----~g~--~~~ad~vV~~~~  286 (328)
                      .+.+.+.++++ ++++++|++|++|.-+ ++.+.+++.    +++  ++.+|.|.+.++
T Consensus        68 ~~~~~~~~~~~~~I~v~~~~~v~~i~G~-~~~v~~v~l~~~~tge~~~l~vdgvFv~IG  125 (126)
T d1fl2a2          68 DQVLQDKLRSLKNVDIILNAQTTEVKGD-GSKVVGLEYRDRVSGDIHNIELAGIFVQIG  125 (126)
T ss_dssp             CHHHHHHHHTCTTEEEESSEEEEEEEES-SSSEEEEEEEETTTCCEEEEECSEEEECSC
T ss_pred             ccccccccccccceeEEcCcceEEEEcc-ccceeeEEEEECCCCCEEEEECCEEEEEeC
Confidence            44555556665 5999999999999987 677887775    233  588999877654

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=83.11  E-value=0.6  Score=36.05  Aligned_cols=35  Identities=14%  Similarity=0.186  Sum_probs=27.3

Q ss_pred             cccEEEECCCh---hHHHHHHhhhhCCCeEEEeccCCC
Q 020312            4 EYDVIVLGTGL---KECILSGLLSVDGLKVLHMDRNDY   38 (328)
Q Consensus         4 ~~dvvIvG~G~---aGl~aA~~L~~~G~~V~vlE~~~~   38 (328)
                      ...++|.||+=   -|.++|..|+++|.+|.+..+++.
T Consensus         5 gK~~lITGass~~GIG~aiA~~l~~~G~~V~i~~~~~~   42 (258)
T d1qsga_           5 GKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDK   42 (258)
T ss_dssp             TCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTT
T ss_pred             CCEEEEECCCCchhHHHHHHHHHHHcCCEEEEEeCCHH
Confidence            45677777642   478899999999999999988654

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=82.96  E-value=0.61  Score=35.92  Aligned_cols=32  Identities=13%  Similarity=0.134  Sum_probs=25.7

Q ss_pred             cEEEECCCh-hHHHHHHhhhhCCCeEEEeccCC
Q 020312            6 DVIVLGTGL-KECILSGLLSVDGLKVLHMDRND   37 (328)
Q Consensus         6 dvvIvG~G~-aGl~aA~~L~~~G~~V~vlE~~~   37 (328)
                      -++|.||+= .|..+|..|+++|.+|.+.++++
T Consensus         7 valVTGas~GIG~aia~~la~~Ga~V~~~~~~~   39 (247)
T d2ew8a1           7 LAVITGGANGIGRAIAERFAVEGADIAIADLVP   39 (247)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCc
Confidence            455667754 48899999999999999998754

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=82.70  E-value=0.53  Score=36.43  Aligned_cols=33  Identities=15%  Similarity=0.176  Sum_probs=26.2

Q ss_pred             ccEEEECCC---hhHHHHHHhhhhCCCeEEEeccCC
Q 020312            5 YDVIVLGTG---LKECILSGLLSVDGLKVLHMDRND   37 (328)
Q Consensus         5 ~dvvIvG~G---~aGl~aA~~L~~~G~~V~vlE~~~   37 (328)
                      .-++|.||+   =.|..+|..|+++|.+|++..+++
T Consensus         9 K~alITGas~~~GIG~aiA~~la~~Ga~V~i~~~~~   44 (256)
T d1ulua_           9 KKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAE   44 (256)
T ss_dssp             CEEEEESCCCSSSHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             CEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCcH
Confidence            457788853   259999999999999999887653

>d1jzta_ c.104.1.1 (A:) Hypothetical protein YNL200c (YNU0_YEAST) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: YjeF N-terminal domain-like
superfamily: YjeF N-terminal domain-like
family: YjeF N-terminal domain-like
domain: Hypothetical protein YNL200c (YNU0 YEAST)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=82.68  E-value=0.55  Score=36.12  Aligned_cols=28  Identities=14%  Similarity=0.231  Sum_probs=23.9

Q ss_pred             EEEECCChh---HHHHHHhhhhCCCeEEEec
Q 020312            7 VIVLGTGLK---ECILSGLLSVDGLKVLHMD   34 (328)
Q Consensus         7 vvIvG~G~a---Gl~aA~~L~~~G~~V~vlE   34 (328)
                      ++++|.|-.   |+++|.+|.+.|++|.|+=
T Consensus        59 lil~G~GNNGGDGl~~Ar~L~~~G~~V~v~~   89 (243)
T d1jzta_          59 FVIAGPGNNGGDGLVCARHLKLFGYNPVVFY   89 (243)
T ss_dssp             EEEECSSHHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred             EEEECCCCccHHHHHHHHHHHhcCCeeEEEE
Confidence            456888777   7999999999999999883

>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-glucuronate decarboxylase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.58  E-value=0.59  Score=37.33  Aligned_cols=31  Identities=26%  Similarity=0.429  Sum_probs=28.1

Q ss_pred             ccEEEECC-ChhHHHHHHhhhhCCCeEEEecc
Q 020312            5 YDVIVLGT-GLKECILSGLLSVDGLKVLHMDR   35 (328)
Q Consensus         5 ~dvvIvG~-G~aGl~aA~~L~~~G~~V~vlE~   35 (328)
                      .+|+|.|| |..|...+-+|.++|++|+.+++
T Consensus         2 KKIlVtG~sGfiG~~lv~~L~~~g~~V~~~d~   33 (312)
T d2b69a1           2 KRILITGGAGFVGSHLTDKLMMDGHEVTVVDN   33 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCcCEEEEEeC
Confidence            47899998 88999999999999999999975

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=82.47  E-value=0.61  Score=36.24  Aligned_cols=31  Identities=23%  Similarity=0.172  Sum_probs=25.8

Q ss_pred             cEEEECCCh-hHHHHHHhhhhCCCeEEEeccC
Q 020312            6 DVIVLGTGL-KECILSGLLSVDGLKVLHMDRN   36 (328)
Q Consensus         6 dvvIvG~G~-aGl~aA~~L~~~G~~V~vlE~~   36 (328)
                      -++|.||+= .|..+|..|+++|.+|++..++
T Consensus        10 ~alITGas~GIG~aia~~la~~Ga~V~~~~r~   41 (259)
T d2ae2a_          10 TALVTGGSRGIGYGIVEELASLGASVYTCSRN   41 (259)
T ss_dssp             EEEEESCSSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            466778764 4899999999999999999874

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=82.47  E-value=0.83  Score=28.06  Aligned_cols=32  Identities=25%  Similarity=0.249  Sum_probs=28.7

Q ss_pred             cEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (328)
Q Consensus         6 dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~   37 (328)
                      .|.|+|||==|--.+....+.|.+|.+++-..
T Consensus         3 ~vgIlG~GQLgrMl~~Aa~~LG~~v~vldp~~   34 (78)
T d3etja2           3 QVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDA   34 (78)
T ss_dssp             EEEEEBCSHHHHHHHHHHGGGTEEEEEECTTS
T ss_pred             EEEEEcCCHHHHHHHHHHHHcCCEEEEEcCCC
Confidence            58899999999999999999999999999643

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=82.01  E-value=0.79  Score=35.93  Aligned_cols=32  Identities=22%  Similarity=0.265  Sum_probs=26.3

Q ss_pred             ccEEEECCC-hhHHHHHHhhhhCCCeEEEeccC
Q 020312            5 YDVIVLGTG-LKECILSGLLSVDGLKVLHMDRN   36 (328)
Q Consensus         5 ~dvvIvG~G-~aGl~aA~~L~~~G~~V~vlE~~   36 (328)
                      .-++|.||+ -.|..+|..|+++|.+|.+.+++
T Consensus         6 K~alITGas~GIG~aia~~la~~Ga~V~i~~r~   38 (276)
T d1bdba_           6 EAVLITGGASGLGRALVDRFVAEGAKVAVLDKS   38 (276)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            456677874 44999999999999999999875

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=81.99  E-value=0.49  Score=36.43  Aligned_cols=30  Identities=20%  Similarity=0.273  Sum_probs=23.9

Q ss_pred             EEEECCCh-hHHHHHHhhhhCCCeEEEeccC
Q 020312            7 VIVLGTGL-KECILSGLLSVDGLKVLHMDRN   36 (328)
Q Consensus         7 vvIvG~G~-aGl~aA~~L~~~G~~V~vlE~~   36 (328)
                      ++|.||+- .|.++|..|+++|.+|++..++
T Consensus         7 alITGas~GIG~a~a~~l~~~G~~Vv~~~r~   37 (243)
T d1q7ba_           7 ALVTGASRGIGRAIAETLAARGAKVIGTATS   37 (243)
T ss_dssp             EEESSCSSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             EEEeCCCCHHHHHHHHHHHHcCCEEEEEeCC
Confidence            44557644 3889999999999999999875

>d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Thermotoga maritima [TaxId: 2336]

Probab=81.92  E-value=0.38  Score=34.49  Aligned_cols=33  Identities=15%  Similarity=0.044  Sum_probs=23.4

Q ss_pred             ccEEEECCChhHHHHHHhhh--h----CCCeEEEeccCC
Q 020312            5 YDVIVLGTGLKECILSGLLS--V----DGLKVLHMDRND   37 (328)
Q Consensus         5 ~dvvIvG~G~aGl~aA~~L~--~----~G~~V~vlE~~~   37 (328)
                      ++|+|||||-.|.+.|+...  .    .+.++.+++.+.
T Consensus         1 mKIaiIGaGs~g~~~~~~~l~~~~~~~~~~el~L~Did~   39 (162)
T d1up7a1           1 MRIAVIGGGSSYTPELVKGLLDISEDVRIDEVIFYDIDE   39 (162)
T ss_dssp             CEEEEETTTCTTHHHHHHHHHHHTTTSCCCEEEEECSCH
T ss_pred             CEEEEECCCHHHHHHHHHHHHhcccccCccEEEEEecCc
Confidence            47999999988877775422  1    146899998753

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.86  E-value=0.66  Score=35.81  Aligned_cols=31  Identities=23%  Similarity=0.296  Sum_probs=25.7

Q ss_pred             cEEEECCCh-hHHHHHHhhhhCCCeEEEeccC
Q 020312            6 DVIVLGTGL-KECILSGLLSVDGLKVLHMDRN   36 (328)
Q Consensus         6 dvvIvG~G~-aGl~aA~~L~~~G~~V~vlE~~   36 (328)
                      -++|.||+- .|.++|..|+++|.+|.+.+++
T Consensus         8 ~alITGas~GIG~aia~~la~~Ga~V~i~~r~   39 (250)
T d1ydea1           8 VVVVTGGGRGIGAGIVRAFVNSGARVVICDKD   39 (250)
T ss_dssp             EEEEETCSSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            467778743 4899999999999999999874

>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=81.85  E-value=0.66  Score=36.96  Aligned_cols=32  Identities=25%  Similarity=0.347  Sum_probs=29.0

Q ss_pred             cEEEECC-ChhHHHHHHhhhhCCCeEEEeccCC
Q 020312            6 DVIVLGT-GLKECILSGLLSVDGLKVLHMDRND   37 (328)
Q Consensus         6 dvvIvG~-G~aGl~aA~~L~~~G~~V~vlE~~~   37 (328)
                      .|+|.|| |..|-..+.+|.++|++|..+.+..
T Consensus         2 ~vLItG~tGfiG~~l~~~Ll~~g~~V~~~~r~~   34 (321)
T d1rpna_           2 SALVTGITGQDGAYLAKLLLEKGYRVHGLVARR   34 (321)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEECCC
T ss_pred             EEEEECCCCHHHHHHHHHHHHCcCEEEEEECCC
Confidence            5889998 8899999999999999999999864

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=81.80  E-value=0.68  Score=35.60  Aligned_cols=32  Identities=22%  Similarity=0.161  Sum_probs=25.5

Q ss_pred             cEEEECCCh-hHHHHHHhhhhCCCeEEEeccCC
Q 020312            6 DVIVLGTGL-KECILSGLLSVDGLKVLHMDRND   37 (328)
Q Consensus         6 dvvIvG~G~-aGl~aA~~L~~~G~~V~vlE~~~   37 (328)
                      -++|.||+- .|..+|..|+++|.+|.+..++.
T Consensus         8 ~alITGas~GIG~aia~~la~~G~~V~~~~r~~   40 (244)
T d1nffa_           8 VALVSGGARGMGASHVRAMVAEGAKVVFGDILD   40 (244)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            455667744 48899999999999999998743

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.73  E-value=0.8  Score=36.36  Aligned_cols=32  Identities=22%  Similarity=0.089  Sum_probs=26.1

Q ss_pred             ccEEEECCChh-HHHHHHhhhhCCCeEEEeccC
Q 020312            5 YDVIVLGTGLK-ECILSGLLSVDGLKVLHMDRN   36 (328)
Q Consensus         5 ~dvvIvG~G~a-Gl~aA~~L~~~G~~V~vlE~~   36 (328)
                      .-++|.||+-. |..+|..|+++|.+|++..++
T Consensus        13 KvalITGas~GIG~aia~~la~~Ga~Vvi~~r~   45 (297)
T d1yxma1          13 QVAIVTGGATGIGKAIVKELLELGSNVVIASRK   45 (297)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            44667777554 889999999999999999874

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=81.68  E-value=0.47  Score=37.02  Aligned_cols=31  Identities=23%  Similarity=0.231  Sum_probs=24.2

Q ss_pred             cEE-EECCC-hhHHHHHHhhhhCCCeEEEeccC
Q 020312            6 DVI-VLGTG-LKECILSGLLSVDGLKVLHMDRN   36 (328)
Q Consensus         6 dvv-IvG~G-~aGl~aA~~L~~~G~~V~vlE~~   36 (328)
                      +++ |.||+ -.|..+|..|+++|.+|.+..++
T Consensus         6 KvalVTGas~GIG~aia~~la~~Ga~V~~~~r~   38 (264)
T d1spxa_           6 KVAIITGSSNGIGRATAVLFAREGAKVTITGRH   38 (264)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            344 44554 34899999999999999999874

>d1fcda2 c.3.1.5 (A:115-255) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=81.67  E-value=0.4  Score=33.47  Aligned_cols=44  Identities=14%  Similarity=0.020  Sum_probs=29.6

Q ss_pred             HHHcCcEEEcCcceeEEEecCCCcEEEEEecCceEEcCEEEECCC
Q 020312          242 SAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPS  286 (328)
Q Consensus       242 ~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~~g~~~~ad~vV~~~~  286 (328)
                      +++.|++++.+.....+..|...+ +.+..+|+++.+|.+++.|+
T Consensus        98 ~~~~~I~~~~~~~~~~v~vd~~~~-~~~~~~Ge~v~yD~l~vvPP  141 (141)
T d1fcda2          98 TENAMIEWHPGPDSAVVKVDGGEM-MVETAFGDEFKADVINLIPP  141 (141)
T ss_dssp             TSSCSEEEECSSTTCEEEEEETTT-EEEETTCCEEECSEEEECCC
T ss_pred             HHhcCceeeecCCceEEeecCCcE-EEEeCCCcEEeeeEEEeCCC
Confidence            456789999987655555542223 33334889999999887763

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=81.57  E-value=0.9  Score=34.79  Aligned_cols=32  Identities=16%  Similarity=0.237  Sum_probs=26.0

Q ss_pred             ccEEEECCCh-hHHHHHHhhhhCCCeEEEeccC
Q 020312            5 YDVIVLGTGL-KECILSGLLSVDGLKVLHMDRN   36 (328)
Q Consensus         5 ~dvvIvG~G~-aGl~aA~~L~~~G~~V~vlE~~   36 (328)
                      .-++|.||+- .|..+|..|+++|.+|++..++
T Consensus         6 K~~lITGas~GIG~aia~~l~~~G~~V~~~~r~   38 (242)
T d1ulsa_           6 KAVLITGAAHGIGRATLELFAKEGARLVACDIE   38 (242)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            4466667644 5999999999999999999874

>d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=81.43  E-value=0.64  Score=37.07  Aligned_cols=36  Identities=22%  Similarity=0.209  Sum_probs=27.5

Q ss_pred             EEEECCChh-HHHHHHhhhhCCCeEEEeccCCCCCCc
Q 020312            7 VIVLGTGLK-ECILSGLLSVDGLKVLHMDRNDYYGGE   42 (328)
Q Consensus         7 vvIvG~G~a-Gl~aA~~L~~~G~~V~vlE~~~~~GG~   42 (328)
                      ++|.||+-+ |..+|..|+++|.+|++.+++...-+.
T Consensus        10 alITGas~GIG~aiA~~la~~Ga~Vvi~d~~~~~~~~   46 (302)
T d1gz6a_          10 VLVTGAGGGLGRAYALAFAERGALVVVNDLGGDFKGV   46 (302)
T ss_dssp             EEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCTTSC
T ss_pred             EEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCchhhhh
Confidence            445566544 889999999999999999887654443

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=81.31  E-value=0.52  Score=36.71  Aligned_cols=32  Identities=19%  Similarity=0.174  Sum_probs=24.5

Q ss_pred             cEEEE-CC-ChhHHHHHHhhhhCCCeEEEeccCC
Q 020312            6 DVIVL-GT-GLKECILSGLLSVDGLKVLHMDRND   37 (328)
Q Consensus         6 dvvIv-G~-G~aGl~aA~~L~~~G~~V~vlE~~~   37 (328)
                      +++|| || +-.|..+|..|+++|.+|++..+++
T Consensus         8 K~alITGas~GIG~aia~~la~~G~~Vv~~~r~~   41 (261)
T d1geea_           8 KVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSK   41 (261)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            45544 54 3348899999999999999998754

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.05  E-value=0.66  Score=33.45  Aligned_cols=32  Identities=25%  Similarity=0.260  Sum_probs=27.4

Q ss_pred             ccEEEECC-ChhHHHHHHhhhhCCCeEEEeccC
Q 020312            5 YDVIVLGT-GLKECILSGLLSVDGLKVLHMDRN   36 (328)
Q Consensus         5 ~dvvIvG~-G~aGl~aA~~L~~~G~~V~vlE~~   36 (328)
                      -.|+|.|+ |..|+.+...+...|.+|+++..+
T Consensus        30 ~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~   62 (174)
T d1yb5a2          30 ESVLVHGASGGVGLAACQIARAYGLKILGTAGT   62 (174)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CEEEEEeccccccccccccccccCccccccccc
Confidence            36899996 999999998888899999988753

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=81.04  E-value=0.76  Score=35.22  Aligned_cols=33  Identities=18%  Similarity=0.336  Sum_probs=27.0

Q ss_pred             ccEEEECCCh-hHHHHHHhhhhCCCeEEEeccCC
Q 020312            5 YDVIVLGTGL-KECILSGLLSVDGLKVLHMDRND   37 (328)
Q Consensus         5 ~dvvIvG~G~-aGl~aA~~L~~~G~~V~vlE~~~   37 (328)
                      .-++|.||+- .|...|..|+++|.+|.+..++.
T Consensus         6 K~alItGas~GIG~aia~~l~~~G~~V~~~~r~~   39 (241)
T d2a4ka1           6 KTILVTGAASGIGRAALDLFAREGASLVAVDREE   39 (241)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            3567778866 49999999999999999998743

>d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Usg-1 protein homolog PA3116
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=80.76  E-value=1.3  Score=30.83  Aligned_cols=33  Identities=24%  Similarity=0.342  Sum_probs=26.2

Q ss_pred             CcccEEEECC-ChhHHHHHHhhhhCC---CeEEEecc
Q 020312            3 EEYDVIVLGT-GLKECILSGLLSVDG---LKVLHMDR   35 (328)
Q Consensus         3 ~~~dvvIvG~-G~aGl~aA~~L~~~G---~~V~vlE~   35 (328)
                      ++++|+|||| |.+|.-....|.+++   .++..+=.
T Consensus         1 q~mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s   37 (144)
T d2hjsa1           1 QPLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLAS   37 (144)
T ss_dssp             CCCCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEEC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEee
Confidence            3578999999 999999999998654   46666643

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=80.74  E-value=1.9  Score=31.23  Aligned_cols=37  Identities=27%  Similarity=0.276  Sum_probs=32.3

Q ss_pred             cccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCC
Q 020312            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYG   40 (328)
Q Consensus         4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~G   40 (328)
                      ...|.|||.|..|-..|..|..-|.+|.++++...-+
T Consensus        42 gk~vgIiG~G~IG~~va~~l~~~g~~v~~~d~~~~~~   78 (181)
T d1qp8a1          42 GEKVAVLGLGEIGTRVGKILAALGAQVRGFSRTPKEG   78 (181)
T ss_dssp             TCEEEEESCSTHHHHHHHHHHHTTCEEEEECSSCCCS
T ss_pred             CceEEEeccccccccceeeeecccccccccccccccc
Confidence            3569999999999999999999999999999875433

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=80.67  E-value=0.56  Score=35.33  Aligned_cols=29  Identities=24%  Similarity=0.223  Sum_probs=25.3

Q ss_pred             cEEEECC-ChhHHHHHHhhhhCCCeEEEec
Q 020312            6 DVIVLGT-GLKECILSGLLSVDGLKVLHMD   34 (328)
Q Consensus         6 dvvIvG~-G~aGl~aA~~L~~~G~~V~vlE   34 (328)
                      .|+|.|| |..|...+..|.++|++|.|+.
T Consensus         5 tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~   34 (252)
T d2q46a1           5 TVLVTGASGRTGQIVYKKLKEGSDKFVAKG   34 (252)
T ss_dssp             EEEEESTTSTTHHHHHHHHHHTTTTCEEEE
T ss_pred             EEEEECCccHHHHHHHHHHHHCCCcEEEEE
Confidence            6899995 9999999999999998876654

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=80.33  E-value=0.89  Score=35.20  Aligned_cols=32  Identities=22%  Similarity=0.189  Sum_probs=27.0

Q ss_pred             ccEEEECCCh-hHHHHHHhhhhCCCeEEEeccC
Q 020312            5 YDVIVLGTGL-KECILSGLLSVDGLKVLHMDRN   36 (328)
Q Consensus         5 ~dvvIvG~G~-aGl~aA~~L~~~G~~V~vlE~~   36 (328)
                      ..++|.||.= .|..+|..|+++|.+|.+..++
T Consensus         7 K~alITGas~GIG~aia~~la~~G~~V~i~~r~   39 (258)
T d1ae1a_           7 TTALVTGGSKGIGYAIVEELAGLGARVYTCSRN   39 (258)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            4578888654 4889999999999999999874

>d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-tyvelose-2-epimerase
species: Salmonella typhi [TaxId: 90370]

Probab=80.28  E-value=0.91  Score=36.21  Aligned_cols=30  Identities=17%  Similarity=0.430  Sum_probs=27.1

Q ss_pred             cEEEECC-ChhHHHHHHhhhhCCCeEEEecc
Q 020312            6 DVIVLGT-GLKECILSGLLSVDGLKVLHMDR   35 (328)
Q Consensus         6 dvvIvG~-G~aGl~aA~~L~~~G~~V~vlE~   35 (328)
                      +|+|.|| |..|-....+|.++|++|+++++
T Consensus         2 KILVTGatGfIGs~lv~~Ll~~g~~V~~id~   32 (338)
T d1orra_           2 KLLITGGCGFLGSNLASFALSQGIDLIVFDN   32 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             EEEEECCCcHHHHHHHHHHHHCcCEEEEEEC
Confidence            6888887 99999999999999999999975

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=80.28  E-value=0.86  Score=32.94  Aligned_cols=44  Identities=16%  Similarity=0.151  Sum_probs=33.6

Q ss_pred             HHcCcEEEcCcceeEEEecCCCcEEEEEecCceEEcCEEEECCCCCc
Q 020312          243 AVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLP  289 (328)
Q Consensus       243 ~~~G~~i~~~~~V~~I~~~~~~~v~~v~~~g~~~~ad~vV~~~~~~~  289 (328)
                      ...+++++++++|++|..+ ...+  ...+++++.+|.||.+.+..|
T Consensus        66 ~~~~i~~~~~~~v~~i~~~-~~~~--~~~~g~~~~~D~vi~a~G~~p  109 (183)
T d1d7ya1          66 RAPEVEWLLGVTAQSFDPQ-AHTV--ALSDGRTLPYGTLVLATGAAP  109 (183)
T ss_dssp             GSTTCEEEETCCEEEEETT-TTEE--EETTSCEEECSEEEECCCEEE
T ss_pred             hcCCeEEEEeccccccccc-ccee--EecCCcEeeeeeEEEEEEEEc
Confidence            3468999999999999865 4332  223889999999998887654

>d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Polymyxin resistance protein ArnA (PrmI)
species: Escherichia coli [TaxId: 562]

Probab=80.18  E-value=0.84  Score=36.73  Aligned_cols=32  Identities=25%  Similarity=0.366  Sum_probs=27.7

Q ss_pred             ccEEEECC-ChhHHHHHHhhhhCC-CeEEEeccC
Q 020312            5 YDVIVLGT-GLKECILSGLLSVDG-LKVLHMDRN   36 (328)
Q Consensus         5 ~dvvIvG~-G~aGl~aA~~L~~~G-~~V~vlE~~   36 (328)
                      ++|+|.|| |..|-..+.+|.++| .+|.++++.
T Consensus         1 MKILITG~tGfiG~~l~~~Ll~~g~~~V~~ld~~   34 (342)
T d2blla1           1 MRVLILGVNGFIGNHLTERLLREDHYEVYGLDIG   34 (342)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHSTTCEEEEEESC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCC
Confidence            36999998 889999999999999 589999874

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=80.15  E-value=0.73  Score=33.15  Aligned_cols=33  Identities=21%  Similarity=0.211  Sum_probs=27.2

Q ss_pred             ccEEEECC-ChhHHHHHHhhhhCCCeEEEeccCC
Q 020312            5 YDVIVLGT-GLKECILSGLLSVDGLKVLHMDRND   37 (328)
Q Consensus         5 ~dvvIvG~-G~aGl~aA~~L~~~G~~V~vlE~~~   37 (328)
                      -.|+|.|+ |..|+.+...++..|.+|+....++
T Consensus        29 ~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~   62 (171)
T d1iz0a2          29 EKVLVQAAAGALGTAAVQVARAMGLRVLAAASRP   62 (171)
T ss_dssp             CEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             CEEEEEeccccchhhhhhhhcccccccccccccc
Confidence            35777796 9999999998888999999888643

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=80.13  E-value=0.58  Score=36.26  Aligned_cols=31  Identities=23%  Similarity=0.195  Sum_probs=23.9

Q ss_pred             cEEEECCC-hhHHHHHHhhhhCCCeEEEeccC
Q 020312            6 DVIVLGTG-LKECILSGLLSVDGLKVLHMDRN   36 (328)
Q Consensus         6 dvvIvG~G-~aGl~aA~~L~~~G~~V~vlE~~   36 (328)
                      -++|.||+ -.|..+|..|+++|.+|++..++
T Consensus        13 ~alITGas~GIG~aia~~la~~Ga~V~~~~r~   44 (255)
T d1fmca_          13 CAIITGAGAGIGKEIAITFATAGASVVVSDIN   44 (255)
T ss_dssp             EEEETTTTSHHHHHHHHHHHTTTCEEEEEESC
T ss_pred             EEEEeCCCcHHHHHHHHHHHHCCCEEEEEECC
Confidence            34455553 34888999999999999999874

>d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sepiapterin reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=80.10  E-value=0.82  Score=35.35  Aligned_cols=31  Identities=29%  Similarity=0.242  Sum_probs=23.4

Q ss_pred             cEEEE-CCCh-hHHHHHHhhhh---CCCeEEEeccC
Q 020312            6 DVIVL-GTGL-KECILSGLLSV---DGLKVLHMDRN   36 (328)
Q Consensus         6 dvvIv-G~G~-aGl~aA~~L~~---~G~~V~vlE~~   36 (328)
                      +|+|| ||+- .|..+|.+|++   +|.+|++..++
T Consensus         7 KvalITGas~GIG~aiA~~lA~~~~~G~~Vv~~~r~   42 (259)
T d1oaaa_           7 AVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARS   42 (259)
T ss_dssp             EEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHhcccCCCEEEEEECC
Confidence            67777 5432 37788889986   79999999874

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=80.09  E-value=0.44  Score=34.89  Aligned_cols=32  Identities=22%  Similarity=0.155  Sum_probs=26.7

Q ss_pred             CcccEEEECCChhHHHHHHhhhhCCCeEEEeccC
Q 020312            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRN   36 (328)
Q Consensus         3 ~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~   36 (328)
                      +...|+.||+|.+-  -|.+|+++|++|+-+|-+
T Consensus        20 ~~~rvLd~GCG~G~--~a~~la~~G~~V~gvD~S   51 (201)
T d1pjza_          20 PGARVLVPLCGKSQ--DMSWLSGQGYHVVGAELS   51 (201)
T ss_dssp             TTCEEEETTTCCSH--HHHHHHHHCCEEEEEEEC
T ss_pred             CCCEEEEecCcCCH--HHHHHHHcCCceEeeccc
Confidence            45689999999986  455888999999999974