Citrus Sinensis ID: 020319

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------
MASSVFHAPCGAPSIKQLECQKYVGLRPSVTLRFNCVKTKTVTTRRLVVTASKSHDGTTKKLGISDAECEAAVVAGNIPEAPPVPPKPAAPAGTPVVPSLPLSRRPRRNRKSPAMRASFQETNLSPANFVYPLFIHEGEEDTPIGAMPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTKLQRGSS
cccccccccccccccccccccccccccccccccccccccccccccEEEEEEccccccccccccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccHHHHHHHHHccccccccEEEEEEEcccccccccccccccccccccHHHHHHHHHHHccccEEEEccccccccccccccccccccccHHHHHHHHHHHcccEEEEEEEcccccccccccccccccccEEcHHHHHHHHHHHHHHHHccccEEcccccccHHHHHHHHHHHHcccccccHHHHHHHHHccccccccccccccccccccccccccccc
ccccccccccccccEEEEcccccccccccccccccccccccccccEEEEEEHHccccccccccccHHHHHHHHHcccccccccccccccccccccccccccccccHHHHcccHHHHHHHccccccHHHEEEEEEEEccccccEcccccccEEEcHcHHHHHHHHHHHHccccEEEEEEcccHHHcEcccHHHHccccHHHHHHHHHHHHccccEEEEEEcccccEcccccccEcccccEcHHHHHHHHHHHHHHHHHccccEEEEccccccHHHHHHHHHHHccccccEEEEEEEEEccHHHHHHHHHHccHHHHcccccccccccc
massvfhapcgapsikqlecqkyvglrpsvtlrfncvktktvtTRRLVVTaskshdgttkklgiSDAECEAAVvagnipeappvppkpaapagtpvvpslplsrrprrnrkspamrasfqetnlspanfvyplfihegeedtpigampgcyrlgwrhGLVQEVAKARdvgvnsvvlfpkvpdalksptgdeayndnglvprTIWLlkdrypdlviytdvaldpyssdghdgivredgvimnDETVHQLCKQAVSQAragadvvspsdmmdGRVGAIRAALDAEGFQHVSIMSYTAKYassfygpfrealdsnprfgdkktklqrgss
massvfhapcgapsikqlecQKYVGlrpsvtlrfncvktktvttrrlvvtaskshdgttkklgiSDAECEAAVVAGNIPEAPPVPPKpaapagtpvvpslplsrrprrnrkspamrasfqetnlspaNFVYPLFIHEGEEDTPIGAMPGCYRLGWRHGLVQEVAKARDVGVNSVVLFpkvpdalksptgdeayndngLVPRTIWLLKDRYPDLVIYTDvaldpyssdGHDGIVREDGVIMNDETVHQLCKQAVSQARAgadvvspsdmMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREaldsnprfgdkktklqrgss
MASSVFHAPCGAPSIKQLECQKYVGLRPSVTLRFNCvktktvttrrlvvtASKSHDGTTKKLGISDAECEAAVVAGNIpeappvppkpaapagtpvvpslplsrrprrNRKSPAMRASFQETNLSPANFVYPLFIHEGEEDTPIGAMPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTKLQRGSS
*******APCGAPSIKQLECQKYVGLRPSVTLRFNCVKTKTVTTRRLVVTA************I**AECEAAVV***************************************************PANFVYPLFIHEGEEDTPIGAMPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKV**********************IWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQA*************DGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFR*********************
*********CGAPSIKQLECQKYVGL************************************************************************SLPLSRRPRRNRKSPAMRASFQETNLSPANFVYPLFIHEGEEDTPIGAMPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTKLQRG**
********PCGAPSIKQLECQKYVGLRPSVTLRFNCVKTKTVTTRRLVVTASKSHDGTTKKLGISDAECEAAVVAGNIPEAPPVP*********PVVPSLPLS*************ASFQETNLSPANFVYPLFIHEGEEDTPIGAMPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQ*********DVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFG***********
****VFHAPCGAPSIKQLECQKYVGLRPSVTLRFNCVKTKTVTTRRLVVTASKS**************CEAAVVAGNIPEAPPVPPK*********VPSLPLSRRPRRNRKSPAMRASFQETNLSPANFVYPLFIHEGEEDTPIGAMPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFGD**T*******
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MASSVFHAPCGAPSIKQLECQKYVGLRPSVTLRFNCVKTKTVTTRRLVVTASKSHDGTTKKLGISDAECEAAVVAGNIPEAPPVPPKPAAPAGTPVVPSLPLSRRPRRNRKSPAMRASFQETNLSPANFVYPLFIHEGEEDTPIGAMPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTKLQRGSS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query327 2.2.26 [Sep-21-2011]
Q9SFH9 430 Delta-aminolevulinic acid yes no 0.975 0.741 0.798 1e-142
P43210 412 Delta-aminolevulinic acid yes no 0.920 0.730 0.783 1e-128
P24493 433 Delta-aminolevulinic acid N/A no 0.966 0.729 0.733 1e-127
Q5Z8V9 426 Delta-aminolevulinic acid yes no 0.969 0.744 0.687 1e-123
P30124 398 Delta-aminolevulinic acid N/A no 0.782 0.643 0.894 1e-123
Q42836 428 Delta-aminolevulinic acid N/A no 0.969 0.740 0.679 1e-122
P45623417 Delta-aminolevulinic acid N/A no 0.773 0.606 0.810 1e-114
Q43058430 Delta-aminolevulinic acid N/A no 0.770 0.586 0.806 1e-102
Q42682 390 Delta-aminolevulinic acid N/A no 0.721 0.605 0.620 2e-76
Q8KCJ0328 Delta-aminolevulinic acid yes no 0.657 0.655 0.517 1e-50
>sp|Q9SFH9|HEM2_ARATH Delta-aminolevulinic acid dehydratase, chloroplastic OS=Arabidopsis thaliana GN=HEMB PE=1 SV=1 Back     alignment and function desciption
 Score =  505 bits (1301), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 258/323 (79%), Positives = 291/323 (90%), Gaps = 4/323 (1%)

Query: 1   MASS-VFHAPCGAPSIKQLECQKYVGLRPSVTLRFNCVKTKTVTTRR--LVVTASKSHDG 57
           MA++ +F+A C  PS + ++C+ Y+GLR +V+ + +   ++  T++R  LVV AS+S +G
Sbjct: 1   MATTPIFNASCSFPSTRGIDCKSYIGLRSNVS-KVSVASSRIATSQRRNLVVRASESGNG 59

Query: 58  TTKKLGISDAECEAAVVAGNIPEAPPVPPKPAAPAGTPVVPSLPLSRRPRRNRKSPAMRA 117
             KKLG+SDAECEAAV AGN+PEAPPVPPKPAAP GTP++  L LSRRPRRNR SP  RA
Sbjct: 60  HAKKLGMSDAECEAAVAAGNVPEAPPVPPKPAAPVGTPIIKPLNLSRRPRRNRASPVTRA 119

Query: 118 SFQETNLSPANFVYPLFIHEGEEDTPIGAMPGCYRLGWRHGLVQEVAKARDVGVNSVVLF 177
           +FQET++SPANFVYPLFIHEGEEDTPIGAMPGCYRLGWRHGLVQEVAKAR VGVNS+VLF
Sbjct: 120 AFQETDISPANFVYPLFIHEGEEDTPIGAMPGCYRLGWRHGLVQEVAKARAVGVNSIVLF 179

Query: 178 PKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDG 237
           PKVP+ALK+ TGDEAYNDNGLVPRTI LLKD+YPDL+IYTDVALDPYSSDGHDGIVREDG
Sbjct: 180 PKVPEALKNSTGDEAYNDNGLVPRTIRLLKDKYPDLIIYTDVALDPYSSDGHDGIVREDG 239

Query: 238 VIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKY 297
           VIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIR+ALDAEGFQ+VSIMSYTAKY
Sbjct: 240 VIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRSALDAEGFQNVSIMSYTAKY 299

Query: 298 ASSFYGPFREALDSNPRFGDKKT 320
           ASSFYGPFREALDSNPRFGDKKT
Sbjct: 300 ASSFYGPFREALDSNPRFGDKKT 322
Catalyzes an early step in the biosynthesis of tetrapyrroles. Binds two molecules of 5-aminolevulinate per subunit, each at a distinct site, and catalyzes their condensation to form porphobilinogen.
Arabidopsis thaliana (taxid: 3702)
EC: 4EC: .EC: 2EC: .EC: 1EC: .EC: 2EC: 4
>sp|P43210|HEM2_SOYBN Delta-aminolevulinic acid dehydratase, chloroplastic OS=Glycine max GN=HEMB PE=2 SV=1 Back     alignment and function description
>sp|P24493|HEM2_SPIOL Delta-aminolevulinic acid dehydratase, chloroplastic OS=Spinacia oleracea GN=HEMB PE=1 SV=2 Back     alignment and function description
>sp|Q5Z8V9|HEM2_ORYSJ Delta-aminolevulinic acid dehydratase, chloroplastic OS=Oryza sativa subsp. japonica GN=HEMB PE=2 SV=1 Back     alignment and function description
>sp|P30124|HEM2_PEA Delta-aminolevulinic acid dehydratase, chloroplastic (Fragment) OS=Pisum sativum GN=HEMB PE=1 SV=1 Back     alignment and function description
>sp|Q42836|HEM2_HORVU Delta-aminolevulinic acid dehydratase, chloroplastic OS=Hordeum vulgare GN=HEMB PE=2 SV=1 Back     alignment and function description
>sp|P45623|HEM2_SELMA Delta-aminolevulinic acid dehydratase, chloroplastic OS=Selaginella martensii GN=HEMB PE=3 SV=1 Back     alignment and function description
>sp|Q43058|HEM2_PHYPA Delta-aminolevulinic acid dehydratase, chloroplastic OS=Physcomitrella patens subsp. patens GN=HEMB PE=2 SV=1 Back     alignment and function description
>sp|Q42682|HEM2_CHLRE Delta-aminolevulinic acid dehydratase, chloroplastic OS=Chlamydomonas reinhardtii GN=HEMB PE=2 SV=1 Back     alignment and function description
>sp|Q8KCJ0|HEM2_CHLTE Delta-aminolevulinic acid dehydratase OS=Chlorobium tepidum (strain ATCC 49652 / DSM 12025 / TLS) GN=hemB PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query327
255545372 432 porphobilinogen synthase, putative [Rici 0.978 0.740 0.867 1e-149
224063068 430 predicted protein [Populus trichocarpa] 0.969 0.737 0.830 1e-142
297838745 430 hypothetical protein ARALYDRAFT_339208 [ 0.975 0.741 0.804 1e-142
15222443 430 delta-aminolevulinic acid dehydratase [A 0.975 0.741 0.798 1e-141
225459583 430 PREDICTED: delta-aminolevulinic acid deh 0.978 0.744 0.829 1e-137
449441790 430 PREDICTED: delta-aminolevulinic acid deh 0.978 0.744 0.838 1e-135
13183730426 aminolevulinate dehydratase [Raphanus sa 0.969 0.744 0.813 1e-131
351721201412 delta-aminolevulinic acid dehydratase, c 0.920 0.730 0.783 1e-127
1097877 430 aminolevulinate dehydratase 0.960 0.730 0.784 1e-126
1170215 433 RecName: Full=Delta-aminolevulinic acid 0.966 0.729 0.733 1e-125
>gi|255545372|ref|XP_002513746.1| porphobilinogen synthase, putative [Ricinus communis] gi|223546832|gb|EEF48329.1| porphobilinogen synthase, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  535 bits (1378), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 281/324 (86%), Positives = 300/324 (92%), Gaps = 4/324 (1%)

Query: 1   MASSVFH-APCGAPSIKQLECQKYVGLRPSV-TLRFNC--VKTKTVTTRRLVVTASKSHD 56
           MAS++F+ A C  P+ K L+C+ YV L+P+V +LRFNC     K    R L+V AS+ HD
Sbjct: 1   MASTIFNNAACTVPARKGLDCKNYVALKPTVHSLRFNCGTNSVKVCPKRVLMVRASERHD 60

Query: 57  GTTKKLGISDAECEAAVVAGNIPEAPPVPPKPAAPAGTPVVPSLPLSRRPRRNRKSPAMR 116
           G  KKLG++DAECEAAVV+GN+PEAPPVPPKPAAPAGTPVVPSLPLSRRPRRNRKSPAMR
Sbjct: 61  GPIKKLGLTDAECEAAVVSGNVPEAPPVPPKPAAPAGTPVVPSLPLSRRPRRNRKSPAMR 120

Query: 117 ASFQETNLSPANFVYPLFIHEGEEDTPIGAMPGCYRLGWRHGLVQEVAKARDVGVNSVVL 176
           ASFQETN+SP+NFVYPLFIHEGEEDTPIGAMPGCYRLGWRHGLV+EVAKARDVGVNSVVL
Sbjct: 121 ASFQETNISPSNFVYPLFIHEGEEDTPIGAMPGCYRLGWRHGLVEEVAKARDVGVNSVVL 180

Query: 177 FPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVRED 236
           FPKVPDALKSPTGDEAYNDNGLVPRTI LLKD+YPDLVIYTDVALDPYSSDGHDGIVRED
Sbjct: 181 FPKVPDALKSPTGDEAYNDNGLVPRTIRLLKDKYPDLVIYTDVALDPYSSDGHDGIVRED 240

Query: 237 GVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAK 296
           GVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAK
Sbjct: 241 GVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAK 300

Query: 297 YASSFYGPFREALDSNPRFGDKKT 320
           YASSFYGPFREALDSNPRFGDKKT
Sbjct: 301 YASSFYGPFREALDSNPRFGDKKT 324

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224063068|ref|XP_002300981.1| predicted protein [Populus trichocarpa] gi|222842707|gb|EEE80254.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297838745|ref|XP_002887254.1| hypothetical protein ARALYDRAFT_339208 [Arabidopsis lyrata subsp. lyrata] gi|297333095|gb|EFH63513.1| hypothetical protein ARALYDRAFT_339208 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|15222443|ref|NP_177132.1| delta-aminolevulinic acid dehydratase [Arabidopsis thaliana] gi|145327197|ref|NP_001077800.1| delta-aminolevulinic acid dehydratase [Arabidopsis thaliana] gi|12229846|sp|Q9SFH9.1|HEM2_ARATH RecName: Full=Delta-aminolevulinic acid dehydratase, chloroplastic; Short=ALADH; AltName: Full=Porphobilinogen synthase; Flags: Precursor gi|11935205|gb|AAG42018.1|AF327428_1 putative aminolevulinate dehydratase [Arabidopsis thaliana] gi|12325198|gb|AAG52549.1|AC013289_16 putative aminolevulinate dehydratase; 38705-36189 [Arabidopsis thaliana] gi|13605645|gb|AAK32816.1|AF361803_1 At1g69740/T6C23_6 [Arabidopsis thaliana] gi|16323332|gb|AAL15379.1| At1g69740/T6C23_6 [Arabidopsis thaliana] gi|19698815|gb|AAL91143.1| putative aminolevulinate dehydratase [Arabidopsis thaliana] gi|21280939|gb|AAM44989.1| putative aminolevulinate dehydratase [Arabidopsis thaliana] gi|21539421|gb|AAM53263.1| putative aminolevulinate dehydratase [Arabidopsis thaliana] gi|22136066|gb|AAM91111.1| putative aminolevulinate dehydratase [Arabidopsis thaliana] gi|332196848|gb|AEE34969.1| delta-aminolevulinic acid dehydratase [Arabidopsis thaliana] gi|332196849|gb|AEE34970.1| delta-aminolevulinic acid dehydratase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|225459583|ref|XP_002285863.1| PREDICTED: delta-aminolevulinic acid dehydratase, chloroplastic [Vitis vinifera] gi|147778245|emb|CAN65137.1| hypothetical protein VITISV_011727 [Vitis vinifera] gi|302141802|emb|CBI19005.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449441790|ref|XP_004138665.1| PREDICTED: delta-aminolevulinic acid dehydratase, chloroplastic-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|13183730|gb|AAK15323.1|AF332195_1 aminolevulinate dehydratase [Raphanus sativus] Back     alignment and taxonomy information
>gi|351721201|ref|NP_001238737.1| delta-aminolevulinic acid dehydratase, chloroplastic [Glycine max] gi|1170214|sp|P43210.1|HEM2_SOYBN RecName: Full=Delta-aminolevulinic acid dehydratase, chloroplastic; Short=ALADH; AltName: Full=Porphobilinogen synthase; Flags: Precursor gi|468000|gb|AAA18342.1| delta-aminolevulinic acid dehydratase [Glycine max] Back     alignment and taxonomy information
>gi|1097877|prf||2114378A aminolevulinate dehydratase Back     alignment and taxonomy information
>gi|1170215|sp|P24493.2|HEM2_SPIOL RecName: Full=Delta-aminolevulinic acid dehydratase, chloroplastic; Short=ALAD; Short=ALADH; AltName: Full=Porphobilinogen synthase; Flags: Precursor gi|805062|emb|CAA40974.1| porphobilinogen synthase [Spinacia oleracea] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query327
TAIR|locus:2205035 430 HEMB1 [Arabidopsis thaliana (t 0.648 0.493 0.924 4.1e-119
TAIR|locus:2823624406 hemb2 [Arabidopsis thaliana (t 0.617 0.497 0.758 1.5e-87
TIGR_CMR|CHY_1210325 CHY_1210 "porphobilinogen synt 0.633 0.636 0.485 1.1e-48
TIGR_CMR|BA_4694 329 BA_4694 "delta-aminolevulinic 0.629 0.626 0.483 1.6e-47
TIGR_CMR|SPO_2076332 SPO_2076 "porphobilinogen synt 0.660 0.650 0.461 6.9e-47
UNIPROTKB|Q9KVN6 347 VC_0105 "Delta-aminolevulinic 0.639 0.602 0.464 1.9e-44
TIGR_CMR|VC_0105 347 VC_0105 "delta-aminolevulinic 0.639 0.602 0.464 1.9e-44
TIGR_CMR|SO_4208336 SO_4208 "delta-aminolevulinic 0.636 0.619 0.457 4.5e-43
TIGR_CMR|GSU_0135325 GSU_0135 "delta-aminolevulinic 0.633 0.636 0.438 5.7e-43
TIGR_CMR|CPS_0169348 CPS_0169 "delta-aminolevulinic 0.623 0.586 0.435 3.6e-41
TAIR|locus:2205035 HEMB1 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1039 (370.8 bits), Expect = 4.1e-119, Sum P(2) = 4.1e-119
 Identities = 196/212 (92%), Positives = 206/212 (97%)

Query:   109 NRKSPAMRASFQETNLSPANFVYPLFIHEGEEDTPIGAMPGCYRLGWRHGLVQEVAKARD 168
             NR SP  RA+FQET++SPANFVYPLFIHEGEEDTPIGAMPGCYRLGWRHGLVQEVAKAR 
Sbjct:   111 NRASPVTRAAFQETDISPANFVYPLFIHEGEEDTPIGAMPGCYRLGWRHGLVQEVAKARA 170

Query:   169 VGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDG 228
             VGVNS+VLFPKVP+ALK+ TGDEAYNDNGLVPRTI LLKD+YPDL+IYTDVALDPYSSDG
Sbjct:   171 VGVNSIVLFPKVPEALKNSTGDEAYNDNGLVPRTIRLLKDKYPDLIIYTDVALDPYSSDG 230

Query:   229 HDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHV 288
             HDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIR+ALDAEGFQ+V
Sbjct:   231 HDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRSALDAEGFQNV 290

Query:   289 SIMSYTAKYASSFYGPFREALDSNPRFGDKKT 320
             SIMSYTAKYASSFYGPFREALDSNPRFGDKKT
Sbjct:   291 SIMSYTAKYASSFYGPFREALDSNPRFGDKKT 322
GO:0003824 "catalytic activity" evidence=IEA
GO:0004655 "porphobilinogen synthase activity" evidence=IEA;ISS
GO:0009507 "chloroplast" evidence=ISM;IDA
GO:0033014 "tetrapyrrole biosynthetic process" evidence=IEA
GO:0046872 "metal ion binding" evidence=IEA
GO:0009570 "chloroplast stroma" evidence=IDA
GO:0006098 "pentose-phosphate shunt" evidence=RCA
GO:0006364 "rRNA processing" evidence=RCA
GO:0015995 "chlorophyll biosynthetic process" evidence=RCA
GO:0006779 "porphyrin-containing compound biosynthetic process" evidence=TAS
TAIR|locus:2823624 hemb2 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TIGR_CMR|CHY_1210 CHY_1210 "porphobilinogen synthase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
TIGR_CMR|BA_4694 BA_4694 "delta-aminolevulinic acid dehydratase" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
TIGR_CMR|SPO_2076 SPO_2076 "porphobilinogen synthase" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms
UNIPROTKB|Q9KVN6 VC_0105 "Delta-aminolevulinic acid dehydratase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] Back     alignment and assigned GO terms
TIGR_CMR|VC_0105 VC_0105 "delta-aminolevulinic acid dehydratase" [Vibrio cholerae O1 biovar El Tor (taxid:686)] Back     alignment and assigned GO terms
TIGR_CMR|SO_4208 SO_4208 "delta-aminolevulinic acid dehydratase" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_0135 GSU_0135 "delta-aminolevulinic acid dehydratase" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
TIGR_CMR|CPS_0169 CPS_0169 "delta-aminolevulinic acid dehydratase" [Colwellia psychrerythraea 34H (taxid:167879)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P30124HEM2_PEA4, ., 2, ., 1, ., 2, 40.89450.78280.6432N/Ano
P45623HEM2_SELMA4, ., 2, ., 1, ., 2, 40.81020.77370.6067N/Ano
P43210HEM2_SOYBN4, ., 2, ., 1, ., 2, 40.78320.92040.7305yesno
P24493HEM2_SPIOL4, ., 2, ., 1, ., 2, 40.73310.96630.7297N/Ano
Q5Z8V9HEM2_ORYSJ4, ., 2, ., 1, ., 2, 40.68750.96940.7441yesno
Q8KCJ0HEM2_CHLTE4, ., 2, ., 1, ., 2, 40.51780.65740.6554yesno
Q59334HEM2_CHLP84, ., 2, ., 1, ., 2, 40.50900.66360.6615yesno
Q9SFH9HEM2_ARATH4, ., 2, ., 1, ., 2, 40.79870.97550.7418yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer4.2.10.963
4th Layer4.2.1.240.946

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.00020758
hypothetical protein (430 aa)
(Populus trichocarpa)
Predicted Functional Partners:
eugene3.00150799
glutamate-1-semialdehyde 2,1-aminomutase (EC-5.4.3.8) (479 aa)
• •• •• 0.995
fgenesh4_pm.C_LG_VII000271
hydroxymethylbilane synthase (EC-2.5.1.61) (363 aa)
• •• •• 0.990
fgenesh4_pg.C_LG_V000312
hydroxymethylbilane synthase (EC-2.5.1.61) (364 aa)
• •• •• 0.990
gw1.148.3.1
uroporphyrin-III C-methyltransferase (EC-2.1.1.107) (328 aa)
• •   • 0.843
estExt_Genewise1_v1.C_LG_II0707
glutamyl-tRNA reductase (EC-1.2.1.70) (469 aa)
• •   • 0.837
gw1.I.4290.1
glutamyl-tRNA reductase (EC-1.2.1.70) (471 aa)
• •   • 0.836
gw1.182.88.1
uroporphyrinogen decarboxylase (EC-4.1.1.37) (357 aa)
• ••  • 0.802
gw1.IX.2784.1
glutamyl-tRNA reductase (EC-1.2.1.70) (503 aa)
• •   • 0.789
estExt_fgenesh4_pg.C_LG_XIX0326
SubName- Full=Putative uncharacterized protein; (403 aa)
• ••  • 0.752
gw1.VI.1271.1
ferrochelatase (EC-4.99.1.1); Catalyzes the ferrous insertion into protoporphyrin IX (By simila [...] (381 aa)
•     • 0.652

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query327
cd04823320 cd04823, ALAD_PBGS_aspartate_rich, Porphobilinogen 1e-144
pfam00490322 pfam00490, ALAD, Delta-aminolevulinic acid dehydra 1e-133
smart01004321 smart01004, ALAD, Delta-aminolevulinic acid dehydr 1e-132
PRK09283323 PRK09283, PRK09283, delta-aminolevulinic acid dehy 1e-125
COG0113330 COG0113, HemB, Delta-aminolevulinic acid dehydrata 1e-117
cd00384314 cd00384, ALAD_PBGS, Porphobilinogen synthase (PBGS 1e-100
PRK13384322 PRK13384, PRK13384, delta-aminolevulinic acid dehy 2e-66
cd04824320 cd04824, eu_ALAD_PBGS_cysteine_rich, Porphobilinog 2e-59
>gnl|CDD|240127 cd04823, ALAD_PBGS_aspartate_rich, Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll Back     alignment and domain information 
 Score =  409 bits (1053), Expect = e-144
 Identities = 134/218 (61%), Positives = 164/218 (75%), Gaps = 3/218 (1%)

Query: 104 RRPRRNRKSPAMRASFQETNLSPANFVYPLFIHEGEE-DTPIGAMPGCYRLGWRHGLVQE 162
            RPRRNR++ A+R   +ET LSP + + PLF+HEGE    PI +MPG +RL     L++E
Sbjct: 1   TRPRRNRRTDALRRLVRETTLSPDDLILPLFVHEGENQREPIPSMPGVFRLSIDE-LLKE 59

Query: 163 VAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALD 222
             +A D+G+ +V LFP  P  LKS  G EAYN + LV R I  +K+ +P+L I TDVALD
Sbjct: 60  AEEAVDLGIPAVALFPVTPPELKSEDGSEAYNPDNLVCRAIRAIKEAFPELGIITDVALD 119

Query: 223 PYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDA 282
           PY+S GHDGIVR DG I+NDETV  LCKQA+ QA AGAD+V+PSDMMDGR+GAIR ALDA
Sbjct: 120 PYTSHGHDGIVR-DGGILNDETVEVLCKQALVQAEAGADIVAPSDMMDGRIGAIREALDA 178

Query: 283 EGFQHVSIMSYTAKYASSFYGPFREALDSNPRFGDKKT 320
           EGF +VSI+SY AKYAS+FYGPFR+AL S PR GDKKT
Sbjct: 179 EGFTNVSILSYAAKYASAFYGPFRDALGSAPRKGDKKT 216

This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. All of PBGS_aspartate_rich contain an aspartate rich metal binding site with the general sequence DXALDX(Y/F)X3G(H/Q)DG. They also contain an allosteric magnesium binding sequence RX~164DX~65EXXXD and are activated by magnesium and/or potassium, but not by zinc. PBGSs_aspartate_rich are found in some bacterial species and photosynthetic organisms such as vascular plants, mosses and algae, but not in archaea. Length = 320
>gnl|CDD|215945 pfam00490, ALAD, Delta-aminolevulinic acid dehydratase Back     alignment and domain information
>gnl|CDD|214968 smart01004, ALAD, Delta-aminolevulinic acid dehydratase Back     alignment and domain information
>gnl|CDD|236450 PRK09283, PRK09283, delta-aminolevulinic acid dehydratase; Validated Back     alignment and domain information
>gnl|CDD|223191 COG0113, HemB, Delta-aminolevulinic acid dehydratase [Coenzyme metabolism] Back     alignment and domain information
>gnl|CDD|238226 cd00384, ALAD_PBGS, Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll Back     alignment and domain information
>gnl|CDD|172020 PRK13384, PRK13384, delta-aminolevulinic acid dehydratase; Provisional Back     alignment and domain information
>gnl|CDD|240128 cd04824, eu_ALAD_PBGS_cysteine_rich, Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 327
cd04823320 ALAD_PBGS_aspartate_rich Porphobilinogen synthase 100.0
COG0113330 HemB Delta-aminolevulinic acid dehydratase [Coenzy 100.0
PF00490324 ALAD: Delta-aminolevulinic acid dehydratase; Inter 100.0
PRK09283323 delta-aminolevulinic acid dehydratase; Validated 100.0
PRK13384322 delta-aminolevulinic acid dehydratase; Provisional 100.0
cd00384314 ALAD_PBGS Porphobilinogen synthase (PBGS), which i 100.0
cd04824320 eu_ALAD_PBGS_cysteine_rich Porphobilinogen synthas 100.0
KOG2794 340 consensus Delta-aminolevulinic acid dehydratase [C 100.0
PRK07807479 inosine 5-monophosphate dehydrogenase; Validated 94.85
COG1060 370 ThiH Thiamine biosynthesis enzyme ThiH and related 93.67
PRK07188352 nicotinate phosphoribosyltransferase; Provisional 93.63
cd00377243 ICL_PEPM Members of the ICL/PEPM enzyme family cat 92.65
cd02803327 OYE_like_FMN_family Old yellow enzyme (OYE)-like F 92.36
PRK08444 353 hypothetical protein; Provisional 91.71
PRK12999 1146 pyruvate carboxylase; Reviewed 90.12
cd00945201 Aldolase_Class_I Class I aldolases. The class I al 89.64
PRK09613 469 thiH thiamine biosynthesis protein ThiH; Reviewed 89.33
TIGR03551 343 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflav 89.0
PRK14042 596 pyruvate carboxylase subunit B; Provisional 88.86
PRK05927 350 hypothetical protein; Provisional 88.69
TIGR01302450 IMP_dehydrog inosine-5'-monophosphate dehydrogenas 88.18
PRK12331 448 oxaloacetate decarboxylase; Provisional 87.56
TIGR01303475 IMP_DH_rel_1 IMP dehydrogenase family protein. Thi 87.55
TIGR00423 309 radical SAM domain protein, CofH subfamily. This p 87.48
PRK12330 499 oxaloacetate decarboxylase; Provisional 87.48
TIGR02320285 PEP_mutase phosphoenolpyruvate phosphomutase. A cl 87.47
PRK05458326 guanosine 5'-monophosphate oxidoreductase; Provisi 87.46
PF13714238 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB 87.03
cd02932336 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN 86.41
PRK08508279 biotin synthase; Provisional 86.06
PF04131192 NanE: Putative N-acetylmannosamine-6-phosphate epi 85.02
PRK08445 348 hypothetical protein; Provisional 84.91
PRK05718212 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog 84.44
TIGR01108 582 oadA oxaloacetate decarboxylase alpha subunit. Thi 84.33
PRK06843404 inosine 5-monophosphate dehydrogenase; Validated 84.17
TIGR03700 351 mena_SCO4494 putative menaquinone biosynthesis pro 83.9
COG5016 472 Pyruvate/oxaloacetate carboxyltransferase [Energy 83.74
cd06557254 KPHMT-like Ketopantoate hydroxymethyltransferase ( 83.7
cd04733338 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN 83.19
PRK11320292 prpB 2-methylisocitrate lyase; Provisional 83.08
PRK00311264 panB 3-methyl-2-oxobutanoate hydroxymethyltransfer 83.03
TIGR02321290 Pphn_pyruv_hyd phosphonopyruvate hydrolase. This f 82.55
PRK06552213 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog 82.05
COG0800211 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Ca 81.97
cd01571302 NAPRTase_B Nicotinate phosphoribosyltransferase (N 81.74
cd04824320 eu_ALAD_PBGS_cysteine_rich Porphobilinogen synthas 81.64
PF03437254 BtpA: BtpA family; InterPro: IPR005137 Photosystem 81.62
PLN02274505 inosine-5'-monophosphate dehydrogenase 81.06
PRK07360 371 FO synthase subunit 2; Reviewed 80.99
PRK05096346 guanosine 5'-monophosphate oxidoreductase; Provisi 80.83
cd00452190 KDPG_aldolase KDPG and KHG aldolase. This family b 80.58
TIGR02317285 prpB methylisocitrate lyase. Members of this famil 80.57
COG0269217 SgbH 3-hexulose-6-phosphate synthase and related p 80.54
PTZ00314495 inosine-5'-monophosphate dehydrogenase; Provisiona 80.39
cd00452190 KDPG_aldolase KDPG and KHG aldolase. This family b 80.3
>cd04823 ALAD_PBGS_aspartate_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll Back     alignment and domain information 
Probab=100.00  E-value=3.4e-108  Score=781.26  Aligned_cols=222  Identities=60%  Similarity=0.984  Sum_probs=216.3

Q ss_pred             CCCCcCCCChhhHhhhccCCCCCCCceeeEEEeeCCC-CcccCCCCCceEecchhhHHHHHHHHHHcCCCeEEEeecCCC
Q 020319          104 RRPRRNRKSPAMRASFQETNLSPANFVYPLFIHEGEE-DTPIGAMPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPD  182 (327)
Q Consensus       104 ~R~RRlR~~~~lR~l~~Et~Ls~~dLI~PlFV~eg~~-~~~I~SMPGv~r~sid~~l~~ev~~~~~lGI~sVlLFgvi~~  182 (327)
                      +|+||||+|+++|+|++||+|+++||||||||+||.+ ++||+|||||||||+| .+++++++++++||++|+|||++|+
T Consensus         1 ~R~RRlR~~~~~R~lv~Et~l~~~dlI~PlFv~e~~~~~~~I~smPg~~r~s~d-~l~~~v~~~~~~Gi~~v~lFgv~~~   79 (320)
T cd04823           1 TRPRRNRRTDALRRLVRETTLSPDDLILPLFVHEGENQREPIPSMPGVFRLSID-ELLKEAEEAVDLGIPAVALFPVTPP   79 (320)
T ss_pred             CCCcccCCCHHHHHHHhcCCCCHHHceeeEEEecCCCCccccCCCCCceeeCHH-HHHHHHHHHHHcCCCEEEEecCCCc
Confidence            5999999999999999999999999999999999975 7999999999999997 7999999999999999999999888


Q ss_pred             CCCCcccccCcCCCCcHHHHHHHHHHHCCCeeEEeeecccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCe
Q 020319          183 ALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADV  262 (327)
Q Consensus       183 ~~KD~~Gs~A~n~~glV~rAIr~iK~~fPdl~VitDVcLc~YTshGHcGIl~~~G~IdND~Tv~~Lak~Als~A~AGADi  262 (327)
                      ++||+.||+|||+||+||||||+||++||||+|||||||||||+||||||++ +|.||||+||++|+||||+||+|||||
T Consensus        80 ~~KD~~gs~A~~~~g~v~~air~iK~~~p~l~vi~DVclc~YT~hGHcGil~-~~~idND~Tl~~L~~~Avs~A~AGADi  158 (320)
T cd04823          80 ELKSEDGSEAYNPDNLVCRAIRAIKEAFPELGIITDVALDPYTSHGHDGIVR-DGGILNDETVEVLCKQALVQAEAGADI  158 (320)
T ss_pred             ccCCcccccccCCCChHHHHHHHHHHhCCCcEEEEeeeccCCCCCCcceecc-CCcCcCHHHHHHHHHHHHHHHHhCCCE
Confidence            8899999999999999999999999999999999999999999999999996 466999999999999999999999999


Q ss_pred             ecCCCCCCchHHHHHHHHHHCCCCCceeeehhhhhhccccchhHHHhhcCCCCCCCcccCCCCCC
Q 020319          263 VSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTKLQRGSS  327 (327)
Q Consensus       263 VAPSDMMDGRV~aIR~aLD~~Gf~~v~IMSYSAKyASsfYGPFRdAa~Sap~fGDRktYQmdp~~  327 (327)
                      |||||||||||++||++||++||++|+|||||+||||+||||||||++|+|+|||||||||||+.
T Consensus       159 VAPSdMMDGrV~aIR~aLd~~g~~~v~ImSYsaKyaS~fYGPFRdAa~Sap~fgDRksYQmdp~n  223 (320)
T cd04823         159 VAPSDMMDGRIGAIREALDAEGFTNVSILSYAAKYASAFYGPFRDALGSAPRKGDKKTYQMDPAN  223 (320)
T ss_pred             EEcccchhhHHHHHHHHHHHCCCCCCceeechHHhhhhccchhHHHhcCCCCCCCccccCCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999974

This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. All of PBGS_aspartate_rich contain an aspartate rich metal binding site with the general sequence DXALDX(Y/F)X3G(H/Q)DG. They also contain an allosteric magnesiu
>COG0113 HemB Delta-aminolevulinic acid dehydratase [Coenzyme metabolism] Back     alignment and domain information
>PF00490 ALAD: Delta-aminolevulinic acid dehydratase; InterPro: IPR001731 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway [] Back     alignment and domain information
>PRK09283 delta-aminolevulinic acid dehydratase; Validated Back     alignment and domain information
>PRK13384 delta-aminolevulinic acid dehydratase; Provisional Back     alignment and domain information
>cd00384 ALAD_PBGS Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll Back     alignment and domain information
>cd04824 eu_ALAD_PBGS_cysteine_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll Back     alignment and domain information
>KOG2794 consensus Delta-aminolevulinic acid dehydratase [Coenzyme transport and metabolism] Back     alignment and domain information
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated Back     alignment and domain information
>COG1060 ThiH Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes [Coenzyme metabolism / General function prediction only] Back     alignment and domain information
>PRK07188 nicotinate phosphoribosyltransferase; Provisional Back     alignment and domain information
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage Back     alignment and domain information
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain Back     alignment and domain information
>PRK08444 hypothetical protein; Provisional Back     alignment and domain information
>PRK12999 pyruvate carboxylase; Reviewed Back     alignment and domain information
>cd00945 Aldolase_Class_I Class I aldolases Back     alignment and domain information
>PRK09613 thiH thiamine biosynthesis protein ThiH; Reviewed Back     alignment and domain information
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit Back     alignment and domain information
>PRK14042 pyruvate carboxylase subunit B; Provisional Back     alignment and domain information
>PRK05927 hypothetical protein; Provisional Back     alignment and domain information
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase Back     alignment and domain information
>PRK12331 oxaloacetate decarboxylase; Provisional Back     alignment and domain information
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein Back     alignment and domain information
>TIGR00423 radical SAM domain protein, CofH subfamily Back     alignment and domain information
>PRK12330 oxaloacetate decarboxylase; Provisional Back     alignment and domain information
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase Back     alignment and domain information
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional Back     alignment and domain information
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B Back     alignment and domain information
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain Back     alignment and domain information
>PRK08508 biotin synthase; Provisional Back     alignment and domain information
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [] Back     alignment and domain information
>PRK08445 hypothetical protein; Provisional Back     alignment and domain information
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional Back     alignment and domain information
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit Back     alignment and domain information
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated Back     alignment and domain information
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family Back     alignment and domain information
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion] Back     alignment and domain information
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway Back     alignment and domain information
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2 Back     alignment and domain information
>PRK11320 prpB 2-methylisocitrate lyase; Provisional Back     alignment and domain information
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed Back     alignment and domain information
>TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase Back     alignment and domain information
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional Back     alignment and domain information
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism] Back     alignment and domain information
>cd01571 NAPRTase_B Nicotinate phosphoribosyltransferase (NAPRTase), subgroup B Back     alignment and domain information
>cd04824 eu_ALAD_PBGS_cysteine_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll Back     alignment and domain information
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane Back     alignment and domain information
>PLN02274 inosine-5'-monophosphate dehydrogenase Back     alignment and domain information
>PRK07360 FO synthase subunit 2; Reviewed Back     alignment and domain information
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional Back     alignment and domain information
>cd00452 KDPG_aldolase KDPG and KHG aldolase Back     alignment and domain information
>TIGR02317 prpB methylisocitrate lyase Back     alignment and domain information
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism] Back     alignment and domain information
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional Back     alignment and domain information
>cd00452 KDPG_aldolase KDPG and KHG aldolase Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query327
3obk_A 356 Crystal Structure Of Delta-Aminolevulinic Acid Dehy 5e-64
1w1z_A328 Structure Of The Plant Like 5-Amino Laevulinic Acid 9e-51
1b4k_A 337 High Resolution Crystal Structure Of A Mg2-Dependen 3e-44
2c15_A 337 5-(4-Carboxy-2-Oxo-Butoxy)-4-Oxo-Pentanoic Acid Aci 4e-44
1gzg_A 337 Complex Of A Mg2-Dependent Porphobilinogen Synthase 1e-43
1w54_A 337 Stepwise Introduction Of A Zinc Binding Site Into P 6e-43
1w56_A 337 Stepwise Introduction Of Zinc Binding Site Into Por 2e-42
1w5m_A 337 Stepwise Introduction Of Zinc Binding Site Into Por 2e-42
1w5n_A 337 Stepwise Introduction Of Zinc Binding Site Into Por 9e-42
1w5o_A 337 Stepwise Introduction Of Zinc Binding Site Into Por 3e-41
1w5p_A 337 Stepwise Introduction Of Zinc Binding Site Into Por 2e-40
1w5q_A 337 Stepwise Introduction Of Zinc Binding Site Into Por 2e-40
1b4e_A323 X-Ray Structure Of 5-Aminolevulinic Acid Dehydratas 9e-40
1l6s_A323 Crystal Structure Of Porphobilinogen Synthase Compl 2e-39
1i8j_A323 Crystal Structure Of Porphobilinogen Synthase Compl 4e-39
2c14_A 337 5-(4-Carboxy-2-Oxo-Butylamino)-4-Oxo-Pentanoic Acid 7e-38
2c13_A 337 5-Hydroxy-Levulinic Acid Bound To Porphobilinogen S 7e-38
2z1b_A330 Crystal Structure Of 5-Aminolevulinic Acid Dehydrat 4e-36
1pv8_A330 Crystal Structure Of A Low Activity F12l Mutant Of 1e-35
1e51_A330 Crystal Structure Of Native Human Erythrocyte 5- Am 1e-35
2z0i_A330 Crystal Structure Of 5-Aminolevulinic Acid Dehydrat 9e-34
1ylv_A 342 Schiff-Base Complex Of Yeast 5-Aminolaevulinic Acid 4e-30
1qnv_A 342 Yeast 5-Aminolaevulinic Acid Dehydratase Lead (Pb) 1e-29
1eb3_A340 Yeast 5-Aminolaevulinic Acid Dehydratase 4,7-Dioxos 2e-29
1h7o_A341 Schiff-Base Complex Of Yeast 5-Aminolaevulinic Acid 2e-29
1aw5_A340 5-Aminolevulinate Dehydratase From Saccharomyces Ce 6e-28
>pdb|3OBK|A Chain A, Crystal Structure Of Delta-Aminolevulinic Acid Dehydratase (Porphobilinogen Synthase) From Toxoplasma Gondii Me49 In Complex With The Reaction Product Porphobilinogen Length = 356 Back     alignment and structure 
Iteration: 1

 Score =  241 bits (614), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 122/214 (57%), Positives = 157/214 (73%), Gaps = 3/214 (1%)
Query: 109 NRKSPAMRASFQETNLSPANFVYPLFIHEGEEDTPIGAMPGCYRLGWRHGLVQEVAKARD 168
           NRK+ A+R   QE  + P++ +YPLF+H+ E   PI +MPG  RL     L++EV +AR 
Sbjct: 26  NRKNRAVRQLVQENLVKPSSLIYPLFVHDEETSVPIPSMPGQSRLSM-EDLLKEVGEARS 84
Query: 169 VGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDG 228
            G+ + +LFPKV D LKS   +E+YN +GL+PR I  LK+ +PD+++  DVALDPYSS G
Sbjct: 85  YGIKAFMLFPKVDDELKSVMAEESYNPDGLLPRAIMALKEAFPDVLLLADVALDPYSSMG 144
Query: 229 HDGIVRED-GVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQH 287
           HDG+V E  G I+ND TVHQLCKQA++ ARAGAD+V PSDMMDGRV AIR +LD EG   
Sbjct: 145 HDGVVDEQSGKIVNDLTVHQLCKQAITLARAGADMVCPSDMMDGRVSAIRESLDMEGCTD 204
Query: 288 VSIMSYTAKYASSFYGPFREALDSNPRFG-DKKT 320
            SI++Y+ KYASSFYGPFR+ALDS+   G DKKT
Sbjct: 205 TSILAYSCKYASSFYGPFRDALDSHMVGGTDKKT 238
>pdb|1W1Z|A Chain A, Structure Of The Plant Like 5-Amino Laevulinic Acid Dehydratase From Chlorobium Vibrioforme Length = 328 Back     alignment and structure
>pdb|1B4K|A Chain A, High Resolution Crystal Structure Of A Mg2-Dependent 5-Aminolevulinic Acid Dehydratase Length = 337 Back     alignment and structure
>pdb|2C15|A Chain A, 5-(4-Carboxy-2-Oxo-Butoxy)-4-Oxo-Pentanoic Acid Acid Bound To Porphobilinogen Synthase From Pseudomonas Aeruginosa Length = 337 Back     alignment and structure
>pdb|1GZG|A Chain A, Complex Of A Mg2-Dependent Porphobilinogen Synthase From Pseudomonas Aeruginosa (Mutant D139n) With 5-Fluorolevulinic Acid Length = 337 Back     alignment and structure
>pdb|1W54|A Chain A, Stepwise Introduction Of A Zinc Binding Site Into Porphobilinogen Synthase From Pseudomonas Aeruginosa (mutation D139c) Length = 337 Back     alignment and structure
>pdb|1W56|A Chain A, Stepwise Introduction Of Zinc Binding Site Into Porphobilinogen Synthase Of Pseudomonas Aeruginosa (Mutations A129c And D131c) Length = 337 Back     alignment and structure
>pdb|1W5M|A Chain A, Stepwise Introduction Of Zinc Binding Site Into Porphobilinogen Synthase Of Pseudomonas Aeruginosa (Mutations A129c And D139c) Length = 337 Back     alignment and structure
>pdb|1W5N|A Chain A, Stepwise Introduction Of Zinc Binding Site Into Porphobilinogen Synthase Of Pseudomonas Aeruginosa (Mutations D131c And D139c) Length = 337 Back     alignment and structure
>pdb|1W5O|A Chain A, Stepwise Introduction Of Zinc Binding Site Into Porphobilinogen Synthase Of Pseudomonas Aeruginosa (Mutations A129c, D131c And D139c) Length = 337 Back     alignment and structure
>pdb|1W5P|A Chain A, Stepwise Introduction Of Zinc Binding Site Into Porphobilinogen Synthase Of Pseudomonas Aeruginosa (Mutations A129c, D131c, D139c, P132e) Length = 337 Back     alignment and structure
>pdb|1W5Q|A Chain A, Stepwise Introduction Of Zinc Binding Site Into Porphobilinogen Synthase Of Pseudomonas Aeruginosa (Mutations A129c, D131c, D139c, P132e, K229r) Length = 337 Back     alignment and structure
>pdb|1B4E|A Chain A, X-Ray Structure Of 5-Aminolevulinic Acid Dehydratase Complexed With The Inhibitor Levulinic Acid Length = 323 Back     alignment and structure
>pdb|1L6S|A Chain A, Crystal Structure Of Porphobilinogen Synthase Complexed With The Inhibitor 4,7-Dioxosebacic Acid Length = 323 Back     alignment and structure
>pdb|1I8J|A Chain A, Crystal Structure Of Porphobilinogen Synthase Complexed With The Inhibitor 4,7-Dioxosebacic Acid Length = 323 Back     alignment and structure
>pdb|2C14|A Chain A, 5-(4-Carboxy-2-Oxo-Butylamino)-4-Oxo-Pentanoic Acid Acid Bound To Porphobilinogen Synthase From Pseudomonas Aeruginosa Length = 337 Back     alignment and structure
>pdb|2C13|A Chain A, 5-Hydroxy-Levulinic Acid Bound To Porphobilinogen Synthase From Pseudomonas Aeruginosa Length = 337 Back     alignment and structure
>pdb|2Z1B|A Chain A, Crystal Structure Of 5-Aminolevulinic Acid Dehydratase (Alad) From Mus Musculs Length = 330 Back     alignment and structure
>pdb|1PV8|A Chain A, Crystal Structure Of A Low Activity F12l Mutant Of Human Porphobilinogen Synthase Length = 330 Back     alignment and structure
>pdb|1E51|A Chain A, Crystal Structure Of Native Human Erythrocyte 5- Aminolaevulinic Acid Dehydratase Length = 330 Back     alignment and structure
>pdb|2Z0I|A Chain A, Crystal Structure Of 5-Aminolevulinic Acid Dehydratase (Alad) From Mus Musculus Length = 330 Back     alignment and structure
>pdb|1YLV|A Chain A, Schiff-Base Complex Of Yeast 5-Aminolaevulinic Acid Dehydratase With Laevulinic Acid Length = 342 Back     alignment and structure
>pdb|1QNV|A Chain A, Yeast 5-Aminolaevulinic Acid Dehydratase Lead (Pb) Complex Length = 342 Back     alignment and structure
>pdb|1EB3|A Chain A, Yeast 5-Aminolaevulinic Acid Dehydratase 4,7-Dioxosebacic Acid Complex Length = 340 Back     alignment and structure
>pdb|1H7O|A Chain A, Schiff-Base Complex Of Yeast 5-Aminolaevulinic Acid Dehydratase With 5-Aminolaevulinic Acid At 1.7 A Resolution Length = 341 Back     alignment and structure
>pdb|1AW5|A Chain A, 5-Aminolevulinate Dehydratase From Saccharomyces Cerevisiae Length = 340 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query327
3obk_A 356 Delta-aminolevulinic acid dehydratase; ssgcid, str 1e-136
1w5q_A337 Delta-aminolevulinic acid dehydratase; synthase, e 1e-128
1w1z_A328 Delta-aminolevulinic acid dehydratase; synthase, t 1e-128
1l6s_A323 Porphobilinogen synthase; dehydratase, lyase; HET: 1e-120
1pv8_A330 Delta-aminolevulinic acid dehydratase; porphobilin 1e-120
1h7n_A 342 5-aminolaevulinic acid dehydratase; lyase, aldolas 1e-114
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-07
>3obk_A Delta-aminolevulinic acid dehydratase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, lyase; HET: PBG; 2.50A {Toxoplasma gondii ME49} Length = 356 Back     alignment and structure
 Score =  389 bits (1001), Expect = e-136
 Identities = 128/239 (53%), Positives = 167/239 (69%), Gaps = 3/239 (1%)

Query: 84  VPPKPAAPAGTPVVPSLPLSRRPRRNRKSPAMRASFQETNLSPANFVYPLFIHEGEEDTP 143
           + P+            LP+  RPRRNRK+ A+R   QE  + P++ +YPLF+H+ E   P
Sbjct: 1   MTPRGPLDNNNYGEVWLPIQARPRRNRKNRAVRQLVQENLVKPSSLIYPLFVHDEETSVP 60

Query: 144 IGAMPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTI 203
           I +MPG  RL     L++EV +AR  G+ + +LFPKV D LKS   +E+YN +GL+PR I
Sbjct: 61  IPSMPGQSRLSMED-LLKEVGEARSYGIKAFMLFPKVDDELKSVMAEESYNPDGLLPRAI 119

Query: 204 WLLKDRYPDLVIYTDVALDPYSSDGHDGIVR-EDGVIMNDETVHQLCKQAVSQARAGADV 262
             LK+ +PD+++  DVALDPYSS GHDG+V  + G I+ND TVHQLCKQA++ ARAGAD+
Sbjct: 120 MALKEAFPDVLLLADVALDPYSSMGHDGVVDEQSGKIVNDLTVHQLCKQAITLARAGADM 179

Query: 263 VSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFG-DKKT 320
           V PSDMMDGRV AIR +LD EG    SI++Y+ KYASSFYGPFR+ALDS+   G DKKT
Sbjct: 180 VCPSDMMDGRVSAIRESLDMEGCTDTSILAYSCKYASSFYGPFRDALDSHMVGGTDKKT 238
>1w5q_A Delta-aminolevulinic acid dehydratase; synthase, evolution, metalloenzyme, porphobilinogen synthase, protein engineering,; 1.4A {Pseudomonas aeruginosa} PDB: 1w5p_A* 1w5o_A 1w5n_A 1w56_A 1w5m_A 1w54_A 1gzg_A* 1b4k_A 2woq_A* 2c14_A* 2c16_A* 2c19_A* 2c15_A* 2c18_A* 2c13_A* Length = 337 Back     alignment and structure
>1w1z_A Delta-aminolevulinic acid dehydratase; synthase, tetrapyrrole biosynthesis, ALAD, porphyrin biosynt heme biosynthesis, lyase; 2.6A {Prosthecochloris vibrioformis} SCOP: c.1.10.3 PDB: 2c1h_A* Length = 328 Back     alignment and structure
>1l6s_A Porphobilinogen synthase; dehydratase, lyase; HET: CME DSB; 1.70A {Escherichia coli} SCOP: c.1.10.3 PDB: 1i8j_A* 1l6y_A* 1b4e_A Length = 323 Back     alignment and structure
>1pv8_A Delta-aminolevulinic acid dehydratase; porphobilinogen synthase, tetrapyrrole biosynthesis, reactio intermediate, lyase; HET: PB1; 2.20A {Homo sapiens} SCOP: c.1.10.3 PDB: 1e51_A* 2z0i_A 2z1b_A Length = 330 Back     alignment and structure
>1h7n_A 5-aminolaevulinic acid dehydratase; lyase, aldolase, TIM barrel, tetrapyrrole synthesis; HET: SHF; 1.6A {Saccharomyces cerevisiae} SCOP: c.1.10.3 PDB: 1h7p_A* 1h7r_A* 1ohl_A* 1qml_A 1qnv_A 1w31_A* 1h7o_A* 1eb3_A* 1gjp_A* 1ylv_A* 1aw5_A Length = 342 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query327
1w5q_A337 Delta-aminolevulinic acid dehydratase; synthase, e 100.0
3obk_A 356 Delta-aminolevulinic acid dehydratase; ssgcid, str 100.0
1w1z_A328 Delta-aminolevulinic acid dehydratase; synthase, t 100.0
1l6s_A323 Porphobilinogen synthase; dehydratase, lyase; HET: 100.0
1h7n_A 342 5-aminolaevulinic acid dehydratase; lyase, aldolas 100.0
1pv8_A330 Delta-aminolevulinic acid dehydratase; porphobilin 100.0
1qop_A268 Tryptophan synthase alpha chain; lyase, carbon-oxy 89.46
1yxy_A234 Putative N-acetylmannosamine-6-phosphate 2-epimer; 89.24
3hgj_A349 Chromate reductase; TIM barrel, oxidoreductase; HE 86.33
3ih1_A305 Methylisocitrate lyase; alpha-beta structure, TIM- 86.11
1zlp_A318 PSR132, petal death protein; TIM-barrel, helix swa 85.87
3lye_A307 Oxaloacetate acetyl hydrolase; (alpha/beta)8 barre 85.47
1xg4_A295 Probable methylisocitrate lyase; 2-methylisocitrat 84.9
4af0_A 556 Inosine-5'-monophosphate dehydrogenase; oxidoreduc 84.78
2ze3_A275 DFA0005; organic waste LEFT-OVER decomposition, al 83.32
2ekc_A262 AQ_1548, tryptophan synthase alpha chain; structur 81.83
1o66_A275 3-methyl-2-oxobutanoate hydroxymethyltransferase; 81.03
1q6o_A216 Humps, 3-keto-L-gulonate 6-phosphate decarboxylase 80.99
3lab_A217 Putative KDPG (2-keto-3-deoxy-6-phosphogluconate) 80.76
4e38_A232 Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho 80.7
3eoo_A298 Methylisocitrate lyase; seattle structural genomic 80.14
1vhc_A224 Putative KHG/KDPG aldolase; structural genomics, u 80.03
>1w5q_A Delta-aminolevulinic acid dehydratase; synthase, evolution, metalloenzyme, porphobilinogen synthase, protein engineering,; 1.4A {Pseudomonas aeruginosa} PDB: 1w5p_A* 1w5o_A 1w5n_A 1w56_A 1w5m_A 1w54_A 1gzg_A* 1b4k_A 2woq_A* 2c14_A* 2c16_A* 2c19_A* 2c15_A* 2c18_A* 2c13_A* Back     alignment and structure
Probab=100.00  E-value=4.4e-112  Score=809.85  Aligned_cols=234  Identities=40%  Similarity=0.688  Sum_probs=216.8

Q ss_pred             CCCCcccCCCCCCCCCcCCCChhhHhhhccCCCCCCCceeeEEEeeCCC-CcccCCCCCceEecchhhHHHHHHHHHHcC
Q 020319           92 AGTPVVPSLPLSRRPRRNRKSPAMRASFQETNLSPANFVYPLFIHEGEE-DTPIGAMPGCYRLGWRHGLVQEVAKARDVG  170 (327)
Q Consensus        92 ~g~p~~~~~~~~~R~RRlR~~~~lR~l~~Et~Ls~~dLI~PlFV~eg~~-~~~I~SMPGv~r~sid~~l~~ev~~~~~lG  170 (327)
                      .|||.+.|++. +|+||||+|+++|+|++||+|+++||||||||+||++ ++||+|||||||||+| .|++++++++++|
T Consensus         2 ~~tp~~~~~p~-~R~RRlR~~~~~R~lv~Et~L~~~dLI~PlFV~eg~~~~~~I~SMPGv~r~sid-~l~~~~~~~~~lG   79 (337)
T 1w5q_A            2 SFTPANRAYPY-TRLRRNRRDDFSRRLVRENVLTVDDLILPVFVLDGVNQRESIPSMPGVERLSID-QLLIEAEEWVALG   79 (337)
T ss_dssp             ----CCCCTTT-CCTTTTTSSHHHHHHHCCCCCCGGGEEEEEEEESSSSCEEECTTSTTCEEEEHH-HHHHHHHHHHHTT
T ss_pred             CCCccCCCCCC-CCCCcCCCChHHHHHHhcCCCCHHHceeeEEEecCCCCccccCCCCCceeeCHH-HHHHHHHHHHHCC
Confidence            59999999988 7999999999999999999999999999999999996 7999999999999997 7999999999999


Q ss_pred             CCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCCCeeEEeeecccCCCCCCcceeecCCCccccHHHHHHHHH
Q 020319          171 VNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCK  250 (327)
Q Consensus       171 I~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fPdl~VitDVcLc~YTshGHcGIl~~~G~IdND~Tv~~Lak  250 (327)
                      |++|+|||++|+++||+.||+||||||+||||||+||++||||+|||||||||||+||||||++++|.|+||+||++|+|
T Consensus        80 i~~v~LFgv~~~~~KD~~gs~A~~~~g~v~rair~iK~~~pdl~vitDvcLc~YT~HGHcGil~~~g~V~ND~Tl~~L~k  159 (337)
T 1w5q_A           80 IPALALFPVTPVEKKSLDAAEAYNPEGIAQRATRALRERFPELGIITDVCLCEFTTHGQCGILDDDGYVLNDVSIDVLVR  159 (337)
T ss_dssp             CCEEEEEECCCGGGCBSSCGGGGCTTSHHHHHHHHHHHHCTTSEEEEEECSTTTBTTCCSSCBCTTSCBCHHHHHHHHHH
T ss_pred             CCEEEEecCCCcccCCcccCccCCCCChHHHHHHHHHHHCCCeEEEEeeecccCCCCCcceeeCCCCcCccHHHHHHHHH
Confidence            99999999888777999999999999999999999999999999999999999999999999976899999999999999


Q ss_pred             HHHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCCCceeeehhhhhhccccchhHHHhhcCCCC--CCCcccCCCCCC
Q 020319          251 QAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRF--GDKKTKLQRGSS  327 (327)
Q Consensus       251 ~Als~A~AGADiVAPSDMMDGRV~aIR~aLD~~Gf~~v~IMSYSAKyASsfYGPFRdAa~Sap~f--GDRktYQmdp~~  327 (327)
                      |||+||+||||||||||||||||++||++||++||++|+||||||||||+||||||||++|+|+|  ||||||||||+.
T Consensus       160 ~Als~A~AGADiVAPSdMMDGrV~aIR~aLd~~G~~~v~ImsYsaKyASafYGPFRdAa~Sap~f~~GDrktYQmdpaN  238 (337)
T 1w5q_A          160 QALSHAEAGAQVVAPSDMMDGRIGAIREALESAGHTNVRVMAYSAKYASAYYGPFRDAVGSASNLGKGNRATYQMDPAN  238 (337)
T ss_dssp             HHHHHHHTTCSEEEECSCCTTHHHHHHHHHHHTTCTTCEEEEEEEEBCCGGGHHHHHC----------CGGGTSBCTTC
T ss_pred             HHHHHHHcCCCeEecccccccHHHHHHHHHHHCCCCCceeehhHHHHHHHHHHHHHHHhcCCcccCCCCccccCCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999  999999999974
>3obk_A Delta-aminolevulinic acid dehydratase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, lyase; HET: PBG; 2.50A {Toxoplasma gondii ME49} Back     alignment and structure
>1w1z_A Delta-aminolevulinic acid dehydratase; synthase, tetrapyrrole biosynthesis, ALAD, porphyrin biosynt heme biosynthesis, lyase; 2.6A {Prosthecochloris vibrioformis} SCOP: c.1.10.3 PDB: 2c1h_A* Back     alignment and structure
>1l6s_A Porphobilinogen synthase; dehydratase, lyase; HET: CME DSB; 1.70A {Escherichia coli} SCOP: c.1.10.3 PDB: 1i8j_A* 1l6y_A* 1b4e_A Back     alignment and structure
>1h7n_A 5-aminolaevulinic acid dehydratase; lyase, aldolase, TIM barrel, tetrapyrrole synthesis; HET: SHF; 1.6A {Saccharomyces cerevisiae} SCOP: c.1.10.3 PDB: 1h7p_A* 1h7r_A* 1ohl_A* 1qml_A 1qnv_A 1w31_A* 1h7o_A* 1eb3_A* 1gjp_A* 1ylv_A* 1aw5_A Back     alignment and structure
>1pv8_A Delta-aminolevulinic acid dehydratase; porphobilinogen synthase, tetrapyrrole biosynthesis, reactio intermediate, lyase; HET: PB1; 2.20A {Homo sapiens} SCOP: c.1.10.3 PDB: 1e51_A* 2z0i_A 2z1b_A Back     alignment and structure
>1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ... Back     alignment and structure
>1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural genomics, epimerase, PSI, structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5 Back     alignment and structure
>3hgj_A Chromate reductase; TIM barrel, oxidoreductase; HET: FMN; 2.00A {Thermus scotoductus} SCOP: c.1.4.0 PDB: 3hf3_A* Back     alignment and structure
>1zlp_A PSR132, petal death protein; TIM-barrel, helix swapping,2-ethyl-3-methylmalate lyase, 2-P methylmalate lyase, lyase/PEP mutase superfamily; 2.70A {Dianthus caryophyllus} Back     alignment and structure
>3lye_A Oxaloacetate acetyl hydrolase; (alpha/beta)8 barrel; 1.30A {Cryphonectria parasitica} PDB: 3m0j_A* 3m0k_A Back     alignment and structure
>1xg4_A Probable methylisocitrate lyase; 2-methylisocitrate lyase/inhibitor complex, isocitrate lyase superfamily; HET: ICT; 1.60A {Escherichia coli} PDB: 1xg3_A* 1mum_A 1oqf_A 1ujq_A 1o5q_A Back     alignment and structure
>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B* Back     alignment and structure
>2ze3_A DFA0005; organic waste LEFT-OVER decomposition, alkaliphilic, ICL/PEPM superfamily, alpha-ketoglutarate LIG isomerase; HET: AKG; 1.65A {Deinococcus ficus} Back     alignment and structure
>2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus} Back     alignment and structure
>1o66_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; structural genomics; HET: MSE; 1.75A {Neisseria meningitidis serogroup B} SCOP: c.1.12.8 PDB: 1o68_A* Back     alignment and structure
>1q6o_A Humps, 3-keto-L-gulonate 6-phosphate decarboxylase, D-; beta barrel, lyase; HET: LG6; 1.20A {Escherichia coli} SCOP: c.1.2.3 PDB: 1kw1_A* 1q6l_A* 1kv8_A* 1q6q_A* 1q6r_A* 1xbv_A* 1so5_A* 1so4_A* 1xby_A* 1so3_A* 1so6_A* 1xbz_A* 1xbx_A* Back     alignment and structure
>4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3} Back     alignment and structure
>3eoo_A Methylisocitrate lyase; seattle structural genomics center for infectious disease, ssgcid; 2.90A {Burkholderia pseudomallei 1655} SCOP: c.1.12.7 Back     alignment and structure
>1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function; HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 327
d1l6sa_323 c.1.10.3 (A:) 5-aminolaevulinate dehydratase, ALAD 2e-72
d1gzga_329 c.1.10.3 (A:) 5-aminolaevulinate dehydratase, ALAD 2e-72
d2c1ha1319 c.1.10.3 (A:10-328) 5-aminolaevulinate dehydratase 7e-69
d1pv8a_320 c.1.10.3 (A:) 5-aminolaevulinate dehydratase, ALAD 5e-67
d1h7na_340 c.1.10.3 (A:) 5-aminolaevulinate dehydratase, ALAD 3e-60
>d1l6sa_ c.1.10.3 (A:) 5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase) {Escherichia coli [TaxId: 562]} Length = 323 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: 5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase)
domain: 5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase)
species: Escherichia coli [TaxId: 562]

 Score =  225 bits (574), Expect = 2e-72
 Identities = 99/223 (44%), Positives = 140/223 (62%), Gaps = 6/223 (2%)

Query: 102 LSRRPRRNRKSPAMRASFQETNLSPANFVYPLFIHEGEED-TPIGAMPGCYRLGWRHGLV 160
           L +RPRR RKSPA+RA F+ET LS  + V P+F+ E  +D   + AMPG  R+  +H L 
Sbjct: 3   LIQRPRRLRKSPALRAMFEETTLSLNDLVLPIFVEEEIDDYKAVEAMPGVMRIPEKH-LA 61

Query: 161 QEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVA 220
           +E+ +  + G+ SV+ F       +  TG +A+ ++GLV R   + K   P++++ +D  
Sbjct: 62  REIERIANAGIRSVMTFGISHHTDE--TGSDAWREDGLVARMSRICKQTVPEMIVMSDTC 119

Query: 221 LDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAAL 280
              Y+S GH G++ E G + ND T+  L KQAV  A AGAD ++PS  MDG+V AIR AL
Sbjct: 120 FCEYTSHGHCGVLCEHG-VDNDATLENLGKQAVVAAAAGADFIAPSAAMDGQVQAIRQAL 178

Query: 281 DAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTKLQ 323
           DA GF+  +IMSY+ K+ASSFYGPFREA  S    GD+K+   
Sbjct: 179 DAAGFKDTAIMSYSTKFASSFYGPFREAAGSAL-KGDRKSYQM 220
>d1gzga_ c.1.10.3 (A:) 5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase) {Pseudomonas aeruginosa [TaxId: 287]} Length = 329 Back     information, alignment and structure
>d2c1ha1 c.1.10.3 (A:10-328) 5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase) {Prosthecochloris vibrioformis [TaxId: 1098]} Length = 319 Back     information, alignment and structure
>d1pv8a_ c.1.10.3 (A:) 5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase) {Human (Homo sapiens) [TaxId: 9606]} Length = 320 Back     information, alignment and structure
>d1h7na_ c.1.10.3 (A:) 5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 340 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query327
d1gzga_329 5-aminolaevulinate dehydratase, ALAD (porphobilino 100.0
d2c1ha1319 5-aminolaevulinate dehydratase, ALAD (porphobilino 100.0
d1l6sa_323 5-aminolaevulinate dehydratase, ALAD (porphobilino 100.0
d1h7na_340 5-aminolaevulinate dehydratase, ALAD (porphobilino 100.0
d1pv8a_320 5-aminolaevulinate dehydratase, ALAD (porphobilino 100.0
d1vrda1330 Inosine monophosphate dehydrogenase (IMPDH) {Therm 88.64
d1muma_289 2-methylisocitrate lyase {Escherichia coli [TaxId: 82.43
d2gl5a1278 Putative dehydratase protein STM2273 {Salmonella t 81.67
d1sjda1242 N-acylamino acid racemase {Amycolatopsis sp. [TaxI 80.92
>d1gzga_ c.1.10.3 (A:) 5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase) {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: 5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase)
domain: 5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase)
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=100.00  E-value=6.8e-108  Score=780.37  Aligned_cols=223  Identities=42%  Similarity=0.740  Sum_probs=218.6

Q ss_pred             CCCCcCCCChhhHhhhccCCCCCCCceeeEEEeeCCC-CcccCCCCCceEecchhhHHHHHHHHHHcCCCeEEEeecCCC
Q 020319          104 RRPRRNRKSPAMRASFQETNLSPANFVYPLFIHEGEE-DTPIGAMPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPD  182 (327)
Q Consensus       104 ~R~RRlR~~~~lR~l~~Et~Ls~~dLI~PlFV~eg~~-~~~I~SMPGv~r~sid~~l~~ev~~~~~lGI~sVlLFgvi~~  182 (327)
                      +|+||||+|+++|+|++||+|+++||||||||+||++ ++||+|||||||||+| .|++++++++++||++|+|||++++
T Consensus         7 ~R~RRlR~~~~iR~Lv~Et~Ls~~dLI~PiFV~eg~~~~~~I~SMPGi~R~Sid-~l~~~ie~~~~lGI~av~LFpvi~~   85 (329)
T d1gzga_           7 TRLRRNRRDDFSRRLVRENVLTVDDLILPVFVLDGVNQRESIPSMPGVERLSID-QLLIEAEEWVALGIPALALFPVTPV   85 (329)
T ss_dssp             CCTHHHHSSHHHHHHHCCCCCCGGGEEEEEEEESSSSCEEECTTSTTCEEEEHH-HHHHHHHHHHHHTCCEEEEEECCCG
T ss_pred             CCccccCCCHHHHHHHhcCCCCHHHceeeeEEeeCCCCceecCCCCCceeeCHH-HHHHHHHHHHhcCcceEEEEeeecc
Confidence            7999999999999999999999999999999999986 7899999999999997 6999999999999999999999888


Q ss_pred             CCCCcccccCcCCCCcHHHHHHHHHHHCCCeeEEeeecccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCe
Q 020319          183 ALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADV  262 (327)
Q Consensus       183 ~~KD~~Gs~A~n~~glV~rAIr~iK~~fPdl~VitDVcLc~YTshGHcGIl~~~G~IdND~Tv~~Lak~Als~A~AGADi  262 (327)
                      ++||+.|++|||+||++|||||.||+.||||+|||||||||||+||||||++++|.||||+||++|+||||+||+|||||
T Consensus        86 ~~Kd~~gseA~n~d~lv~rAIr~IK~~~p~l~vi~DVcLc~YT~hGHcGil~~~g~idND~Tl~~L~k~Al~~A~AGaDi  165 (329)
T d1gzga_          86 EKKSLDAAEAYNPEGIAQRATRALRERFPELGIITDVALDPFTTHGQNGILDDDGYVLNDVSIDVLVRQALSHAEAGAQV  165 (329)
T ss_dssp             GGCBSSCGGGGCTTSHHHHHHHHHHHHCTTSEEEEEECSTTTBTTCCSSCBCTTSCBCHHHHHHHHHHHHHHHHHHTCSE
T ss_pred             ccccCCcccccCcchHHHHHHHHHHHhhCcEEEEehhccchhhhhccCCcccCCCCcCcHHHHHHHHHHHHHHHHccCCe
Confidence            89999999999999999999999999999999999999999999999999988999999999999999999999999999


Q ss_pred             ecCCCCCCchHHHHHHHHHHCCCCCceeeehhhhhhccccchhHHHhhcCCCC--CCCcccCCCCCC
Q 020319          263 VSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRF--GDKKTKLQRGSS  327 (327)
Q Consensus       263 VAPSDMMDGRV~aIR~aLD~~Gf~~v~IMSYSAKyASsfYGPFRdAa~Sap~f--GDRktYQmdp~~  327 (327)
                      |||||||||||++||++||++||++|+|||||+||||+||||||||++|+|+|  ||||||||||+.
T Consensus       166 vAPSdMMDGrV~aIR~~Ld~~g~~~v~ImsYsaKfaS~fYGPFRda~~S~p~~~~gdr~sYQmd~~n  232 (329)
T d1gzga_         166 VAPSDMMDGRIGAIREALESAGHTNVRVMAYSAKYASAYYGPFRDAVGSASNLGKGNKATYQMDPAN  232 (329)
T ss_dssp             EEECSCCTTHHHHHHHHHHHTTCTTCEEEEEEEEBCCGGGHHHHHHHTCHHHHTTCCCTTTSBCTTC
T ss_pred             eeccccchhHHHHHHHHHHHcCCcCcceeehhhhhchhhhhhHHHHhhchhccCCCCccccccCCCC
Confidence            99999999999999999999999999999999999999999999999999987  999999999974
>d2c1ha1 c.1.10.3 (A:10-328) 5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase) {Prosthecochloris vibrioformis [TaxId: 1098]} Back     information, alignment and structure
>d1l6sa_ c.1.10.3 (A:) 5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1h7na_ c.1.10.3 (A:) 5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1pv8a_ c.1.10.3 (A:) 5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vrda1 c.1.5.1 (A:1-85,A:213-457) Inosine monophosphate dehydrogenase (IMPDH) {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1muma_ c.1.12.7 (A:) 2-methylisocitrate lyase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2gl5a1 c.1.11.2 (A:123-400) Putative dehydratase protein STM2273 {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1sjda1 c.1.11.2 (A:126-367) N-acylamino acid racemase {Amycolatopsis sp. [TaxId: 37632]} Back     information, alignment and structure