Citrus Sinensis ID: 020327

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------
Protein Sequence
MLLLQSHSRFLLEALLNRVQNVDKATEVDYHWVEFDDVRYHVQVTMKNPHIVLLSVSLPVPPPETIFIGGLPFGAIEAIKAAYGNVVQILDPPRDGFNLTLKLNLSKLPPNEENKHALLVKIASVREVVLGAPLRVVLKHLASKTVASDIDQLLALVHRPKESFFLIPQAEKVTVVFPMRFNDSIDTVLATSFLQEFVEARRTAGLNNAPLCMWSSSPPLELKGVPSETLSANAGFVTFVIFPRHVEGKKLDRTVWNLSTFHAYVSYHVKCSEGFMHTRMRRRVESMIRTLDRAKPDAEKLKKSTSNKSFKRLSLKDLKDHRSNSMS
Secondary Structure (PSIPRED)
ccccccccHHHHHHHHHHHHcccccccccEEEEEcccEEEEEEEccccccEEEEEEEEccccccccccccccccHHHHHHHHHccccccccccccccEEEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccEEEEcccccEEEEEEcccEEEEEEEEEEccccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccEEEEEEEEEccccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccEEEccHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
cccEccccHHHHHHHHHHHHccccccccEEEEEEcccEEEEEEcccccccEEEEEEEEccccHHHHHHHHHHccHHHHHHHHHcccEEEEcccccccEEEEEEEHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEEccccEEEEEccccEEEEEEEEEEcccccEEHHHHHHHHHHHHHHHHHHcccccEEEccccccHHcccccccccccEEEEEEEEcHHHHccccHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHcccccccccEEEccHHHHHHccccccc
Coil and Loop (DISEMBL)
MLLLQSHSRFLLEALLNRVQnvdkatevdyhwvefddVRYHVQVTMKNPHIVLLSvslpvpppetifigglpfGAIEAIKAAYGNvvqildpprdgfnltlklnlsklppneenKHALLVKIASVREVVLGAPLRVVLKHLASKTVASDIDQLLALVhrpkesfflipqaekvtvvfpmrfndsIDTVLATSFLQEFVEARRTaglnnaplcmwssspplelkgvpsetlsanagfVTFVIfprhvegkkldrtVWNLSTFHAYVSYHVKCSEGFMHTRMRRRVESMIRTLDRAkpdaeklkkstsnksfkrlslkdlkdhrsnsms
Flexible Loop (DISEMBL)
MLLLQSHSRFLLEALLNRVQNVDKATEVDYHWVEFDDVRYHVQVTMKNPHIVLLSVSLPVPPPETIFIGGLPFGAIEAIKAAYGNVVQILDPPRDGFNLTLKLNLSKLPPNEENKHALLVKIASVREVVLGAPLRVVLKHLASKTVASDIDQLLALVHRPKESFFLIPQAEKVTVVFPMRFNDSIDTVLATSFLQEFVEARRTAGLNNAPLCMWSSSPPLELKGVPSETLSANAGFVTFVIFPRHVEGKKLDRTVWNLSTFHAYVSYHVKCSEGFMHTRMRRRVESMIRtldrakpdaeklkkstsnksfkrlslkdlkdhrsnsms
Low Complexity Region (SEG)
MLLLQSHSRFLLEALLNRVQNVDKATEVDYHWVEFDDVRYHVQVTMKNPHIvllsvslpvpppETIFIGGLPFGAIEAIKAAYGNVVQILDPPRDGFNLTLKLNLSKLPPNEENKHALLVKIASVREVVLGAPLRVVLKHLASKTVASDIDQLLALVHRPKESFFLIPQAEKVTVVFPMRFNDSIDTVLATSFLQEFVEARRTAGLNNAPLCMWSSSPPLELKGVPSETLSANAGFVTFVIFPRHVEGKKLDRTVWNLSTFHAYVSYHVKCSEGFMHTRMRRRVESMIRTLDRAKPDAEKLKKSTSNKSFKRLSLKDLKDHRSNSMS
Disordered region (IsUnstruct)
*******SRFLLEALLNRVQNVDKATEVDYHWVEFDDVRYHVQVTMKNPHIVLLSVSLPVPPPETIFIGGLPFGAIEAIKAAYGNVVQILDPPRDGFNLTLKLNLSKL*****NKHALLVKIASVREVVLGAPLRVVLKHLASKTVASDIDQLLALVHRPKESFFLIPQAEKVTVVFPMRFNDSIDTVLATSFLQEFVEARRTAGLNNAPLCMWSS***LELKGVPSETLSANAGFVTFVIFPRHVEGKKLDRTVWNLSTFHAYVSYHVKCSEGFMHTRM***********************************************
Disordered Region (DISOPRED)
MLLLQSHSRFLLEALLNRVQNVDKATEVDYHWVEFDDVRYHVQVTMKNPHIVLLSVSLPVPPPETIFIGGLPFGAIEAIKAAYGNVVQILDPPRDGFNLTLKLNLSKLPPNEENKHALLVKIASVREVVLGAPLRVVL****************ALVHRPKESFFLIPQAEKVTVVFPMRFNDSIDTVLATSFLQEFVEARRTAGLNNAPLCMWSSSPPLELKGVPSETLSANAGFVTFVIFPRHVEGKKLDRTVWNLSTFHAYVSYHVKCSEGFMHTRMRRRVESMIRTLD***********************************
Disordered Region (DISEMBL)
MLLLQSHSRFLLEALLNRVQNVDKATEVDYHWVEFDDVRYHVQVTMKNPHIVLLSVSLPVPPPETIFIGGLPFGAIEAIKAAYGNVVQILDPPRDGFNLTLKLNLSKLPPNEENKHALLVKIASVREVVLGAPLRVVLKHLASKTVASDIDQLLALVHRPKESFFLIPQAEKVTVVFPMRFNDSIDTVLATSFLQEFVEARRTAGLNNAPLCMWSSSPPLELKGVPSETLSANAGFVTFVIFPRHVEGKKLDRTVWNLSTFHAYVSYHVKCSEGFMHTRMRRRVESMIRTLDRAK***********NKSFKRLSLKDL*********
Disordered Region (DISPRO)
MLLLQSHSRFLLEALLNRVQNVDKATEVDYHWVEFDDVRYHVQVTMKNPHIVLLSVSLPVPPPETIFIGGLPFGAIEAIKAAYGNVVQILDPPRDGFNLTLKLNLSKLPPNEENKHALLVKIASVREVVLGAPLRVVLKHLASKTVASDIDQLLALVHRPKESFFLIPQAEKVTVVFPMRFNDSIDTVLATSFLQEFVEARRTAGLNNAPLCMWSSSPPLELKGVPSETLSANAGFVTFVIFPRHVEGKKLDRTVWNLSTFHAYVSYHVKCSEGFMHTRMRRRVESMIRTLDRAK************KSFKRLSLKDLKD*******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLLLQSHSRFLLEALLNRVQNVDKATEVDYHWVEFDDVRYHVQVTMKNPHIVLLSVSLPVPPPETIFIGGLPFGAIEAIKAAYGNVVQILDPPRDGFNLTLKLNLSKLPPNEENKHALLVKIASVREVVLGAPLRVVLKHLASKTVASDIDQLLALVHRPKESFFLIPQAEKVTVVFPMRFNDSIDTVLATSFLQEFVEARRTAGLNNAPLCMWSSSPPLELKGVPSETLSANAGFVTFVIFPRHVEGKKLDRTVWNLSTFHAYVSYHVKCSEGFMHTRMRRRVESMIRTLDRAKPDAEKLKKSTSNKSFKRLSLKDLKDHRSNSMS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	327	2.2.26 [Sep-21-2011]
O96623	293	Actin-related protein 2/3	yes	no	0.883	0.986	0.339	1e-42
O14241	317	Actin-related protein 2/3	yes	no	0.920	0.949	0.305	9e-40
Q8WTM6	301	Probable actin-related pr	yes	no	0.902	0.980	0.298	1e-38
Q5R5Z5	300	Actin-related protein 2/3	yes	no	0.889	0.97	0.313	8e-37
O15144	300	Actin-related protein 2/3	yes	no	0.889	0.97	0.313	8e-37
Q3MHR7	300	Actin-related protein 2/3	yes	no	0.889	0.97	0.313	1e-36
P85970	300	Actin-related protein 2/3	yes	no	0.889	0.97	0.313	1e-36
Q9CVB6	300	Actin-related protein 2/3	yes	no	0.889	0.97	0.313	2e-36
Q9VIM5	301	Probable actin-related pr	yes	no	0.902	0.980	0.290	2e-34
P53731	342	Actin-related protein 2/3	yes	no	0.896	0.856	0.297	1e-33

>sp|O96623|ARPC2_DICDI Actin-related protein 2/3 complex subunit 2 OS=Dictyostelium discoideum GN=arcB PE=1 SV=1

 Score =  174 bits (440), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 107/315 (33%), Positives = 183/315 (58%), Gaps = 26/315 (8%)

Query: 1   MLLLQSHSRFLLEALLNRVQNVDKATEVDYHWVEFDDVRYHVQVTMKNPHIVLLSVSLPV 60
           MLLL++H+R L + +++  +   +   +   + +FD V+++VQ T  +   +++SVSL  
Sbjct: 1   MLLLETHNRILYDEVISHFEGDRRVNNI---FADFDGVKFNVQ-TSDDKSSLMVSVSLHA 56

Query: 61  PPPETIFIGGLPFGAIEAIKAAYGNVVQILDPPRDGFNLTLKLNLSKLPPNEENKHALLV 120
                     L  G    +K+ YG+++Q    P  G+++TL +  S       NK  L  
Sbjct: 57  AADL------LKNGGSALLKSVYGDMLQA--KPEGGYDVTLVIQSS----FSGNKEELAK 104

Query: 121 KIASVREVVLGAPLRVVLKHLASKTVASDIDQLLALVHRPKESFFLIPQAEKVTVVFPMR 180
           K++ ++  ++ AP  +V + + +K     + +++A+ +R  E+F+L PQ + V V+F + 
Sbjct: 105 KVSLLKRHLVAAPFLMVFEGIEAK---KPLPEIIAINYRTDETFYLKPQGDNVIVIFDIA 161

Query: 181 FNDSIDTVLATSFLQEFVEARRTAGLNNAPLCMWSS-SPPLELKGVPS-ETLSANAGFVT 238
           F D+ D +L+  FLQ FV+ R+T  ++N P   +S   PPLELKGV       AN GFV+
Sbjct: 162 FKDADDVILSKIFLQSFVDVRKT--ISNVPSITFSQKDPPLELKGVKGVRAGQANHGFVS 219

Query: 239 FVIFPRHVEGKKLDRTVWNLSTFHAYVSYHVKCSEGFMHTRMRRRVESMIRTLDRAKPD- 297
           FV+FP H+  KK   +   + TF  Y+ YH+KC++G+MHT MR RVES+I+ L+RAKP+ 
Sbjct: 220 FVLFPAHI--KKPQESADLIQTFRDYLHYHIKCAKGYMHTSMRNRVESLIQVLNRAKPEP 277

Query: 298 AEKLKKSTSNKSFKR 312
              +K++ + K FK+
Sbjct: 278 VNTVKRTITGKFFKQ 292

Functions as component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks. Seems to contact the pointed end of the daughter actin filament. The Arp2/3 complex is involved in organizing the actin system in cell motility and chemotaxis, in phagocytosis and macropinocytosis, at late steps of endosome processing, and in mitosis. In concert with a group of other proteins, the Arp2/3 complex plays a general role in the rapid activation and adaptation of the actin system to its multiple functions.
Dictyostelium discoideum (taxid: 44689)

>sp|O14241|ARPC2_SCHPO Actin-related protein 2/3 complex subunit 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=arc2 PE=1 SV=1

 Score =  164 bits (415), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 100/327 (30%), Positives = 171/327 (52%), Gaps = 26/327 (7%)

Query: 1   MLLLQSHSRFLLEALLNRVQNVDKATEVDYHWVEFDDVRYHVQVTMKNPHIVLLSVSLPV 60
           ML L  ++ F+ E L  R  + +  + +D    +FD V +H+  T +    +L+S+S+  
Sbjct: 1   MLSLDYNNIFIYELLTERFSS-ENPSSIDQVVTDFDGVTFHIS-TPEEKTKILISLSMKC 58

Query: 61  PPPETIFIGGLPFGAIEAIKAAYGNVVQILDPPRDGFNLTLKLNLSKLPPNEENKHALLV 120
            P        + +G ++ +K  YG  V     P  G+N ++ ++L +LP  +E K  L +
Sbjct: 59  YPE------LVNYGTLDLLKQIYGAYVH---EPEMGYNFSILIDLQQLPATDEEKEQLAM 109

Query: 121 KIASVREVVLGAPL------RVVLKHLASKT--------VASDIDQLLALVHRPKESFFL 166
            I+ ++  VL AP       +  L  LA K           +   +L+A+ +R +E+  L
Sbjct: 110 SISMLKRNVLAAPFHRAFTKQAELADLARKDPENAPMLDKQATSQELMAIHYRDEETIVL 169

Query: 167 IPQAEKVTVVFPMRFNDSIDTVLATSFLQEFVEARRTAGLNNAPLCMWS-SSPPLELKGV 225
            P+ ++VTVVF  +F +  D +    FLQEFV+ARR   +  AP  ++S   PPLE++ +
Sbjct: 170 WPEHDRVTVVFSTKFREETDRIFGKVFLQEFVDARRRPAIQTAPQVLFSYRDPPLEIRDI 229

Query: 226 PSETLSANAGFVTFVIFPRHVEGKKLDRTVWNLSTFHAYVSYHVKCSEGFMHTRMRRRVE 285
                  + GFVTFV+F RH   +  +  + ++  F   + +H+K S+ +MH RMR+RV 
Sbjct: 230 QGIQKGDDFGFVTFVLFERHFTPQNREDCISHIQVFRNTLHFHIKASKAYMHQRMRKRVA 289

Query: 286 SMIRTLDRAKPDAEKLKKSTSNKSFKR 312
              + L+RAKPD E  +K+ + +SF R
Sbjct: 290 DFQKVLNRAKPDVELERKTATGRSFVR 316

Functions as actin-binding component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks. Seems to contact the mother actin filament.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q8WTM6|ARPC2_CAEEL Probable actin-related protein 2/3 complex subunit 2 OS=Caenorhabditis elegans GN=arx-4 PE=3 SV=1

 Score =  160 bits (405), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 94/315 (29%), Positives = 168/315 (53%), Gaps = 20/315 (6%)

Query: 1   MLLLQSHSRFLLEALLNRVQNVDKATE---VDYHWVEFDDVRYHVQVTMKNPHIVLLSVS 57
           M++L+ ++R ++E L  +  N  +  +   V+  + +FD V Y +     +   ++LS+S
Sbjct: 1   MIILEQNNRIIVELLEQKFANAKEGGKPESVNVTFADFDGVLYKLSNPDGDRTKIILSIS 60

Query: 58  LPVPPPETIFIGGLPFGAIEAIKAAYGNVVQILDPPRDGFNLTLKLNLSKLPPNEENKHA 117
           L        +      GA + ++  YG    +   P  GFN+TL+ NL+ LP +  +   
Sbjct: 61  LK------FYTELQQHGADDLLRRVYGG--HMRSTPEQGFNVTLEYNLADLPADTTD--- 109

Query: 118 LLVKIASVREVVLGAPLRVVLKHLASKTVASDIDQLLALVHRPKESFFLIPQAEKVTVVF 177
            LV+ AS  +    A   V  K+   +    +  +   + +R  E+ ++  +A++VTV+F
Sbjct: 110 -LVQAASALKRNCFAS--VFEKYFEFQEAGQEGHKRAVINYRDDETMYIEAKADRVTVIF 166

Query: 178 PMRFNDSIDTVLATSFLQEFVEARRTAGLNNAPLCMWS-SSPPLELKGVPSETLSANAGF 236
              F D+ D ++   FLQEF E R+ +    AP  ++S   PPLELK +P   +  N G+
Sbjct: 167 STVFKDADDVIIGKVFLQEFREGRKAS--QTAPAVLYSLGEPPLELKDLPEARVGDNVGY 224

Query: 237 VTFVIFPRHVEGKKLDRTVWNLSTFHAYVSYHVKCSEGFMHTRMRRRVESMIRTLDRAKP 296
           +TFV+FPRH   K  D T+  + +F  Y+ YH+KCS+ ++HTRMR +    ++ L+RA+P
Sbjct: 225 ITFVLFPRHTNKKTKDNTIDLIHSFRDYLHYHIKCSKVYLHTRMRAKTTDFLKVLNRARP 284

Query: 297 DAEKLKKSTSNKSFK 311
           + +  KK+   ++F+
Sbjct: 285 EVKGEKKTFHGRTFQ 299

Functions as actin-binding component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks. Seems to contact the mother actin filament.

Caenorhabditis elegans (taxid: 6239)

>sp|Q5R5Z5|ARPC2_PONAB Actin-related protein 2/3 complex subunit 2 OS=Pongo abelii GN=ARPC2 PE=2 SV=1

 Score =  154 bits (389), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 99/316 (31%), Positives = 168/316 (53%), Gaps = 25/316 (7%)

Query: 1   MLLLQSHSRFLLEALLNRVQNV---DKATEVDYHWVEFDDVRYHVQVTMKNPHIVLLSVS 57
           M+LL+ ++R + E L  + +N    +K   V+  + +FD V YH+     +   V++S+S
Sbjct: 1   MILLEVNNRIIEETLALKFENAAAGNKPEAVEVTFADFDGVLYHISNPNGDKTKVMVSIS 60

Query: 58  LPVPPPETIFIGGL-PFGAIEAIKAAYGNVVQILDPPRDGFNLTLKLNLSKLPPNEENKH 116
           L        F   L   GA E +K  YG+    L  P  G+N++L  +L  LP +   K 
Sbjct: 61  LK-------FYKELQAHGADELLKRVYGS---FLVNPESGYNVSLLYDLENLPAS---KD 107

Query: 117 ALLVKIASVREVVLGAPLRVVLKHLASKTVASDIDQLLALVHRPKESFFLIPQAEKVTVV 176
           +++ +   ++     +   V  K+   +    + +    + +R  E+ ++  + ++VTVV
Sbjct: 108 SIVHQAGMLKRNCFAS---VFEKYFQFQEEGKEGENRAVIHYRDDETMYVESKKDRVTVV 164

Query: 177 FPMRFNDSIDTVLATSFLQEFVEARRTAGLNNAPLCMWS-SSPPLELKGVPSETLSANAG 235
           F   F D  D V+   F+QEF E RR +  + AP  ++S   PPLELK   +  +  N G
Sbjct: 165 FSTVFKDDDDVVIGKVFMQEFKEGRRAS--HTAPQVLFSHREPPLELKDTDA-AVGDNIG 221

Query: 236 FVTFVIFPRHVEGKKLDRTVWNLSTFHAYVSYHVKCSEGFMHTRMRRRVESMIRTLDRAK 295
           ++TFV+FPRH      D T+  + TF  Y+ YH+KCS+ ++HTRMR +    ++ L+RA+
Sbjct: 222 YITFVLFPRHTNASARDNTINLIHTFRDYLHYHIKCSKAYIHTRMRAKTSDFLKVLNRAR 281

Query: 296 PDAEKLK-KSTSNKSF 310
           PDAEK + K+ + K+F
Sbjct: 282 PDAEKKEMKTITGKTF 297

Functions as actin-binding component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks. Seems to contact the mother actin filament.

Pongo abelii (taxid: 9601)

>sp|O15144|ARPC2_HUMAN Actin-related protein 2/3 complex subunit 2 OS=Homo sapiens GN=ARPC2 PE=1 SV=1

 Score =  154 bits (389), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 99/316 (31%), Positives = 168/316 (53%), Gaps = 25/316 (7%)

Query: 1   MLLLQSHSRFLLEALLNRVQNV---DKATEVDYHWVEFDDVRYHVQVTMKNPHIVLLSVS 57
           M+LL+ ++R + E L  + +N    +K   V+  + +FD V YH+     +   V++S+S
Sbjct: 1   MILLEVNNRIIEETLALKFENAAAGNKPEAVEVTFADFDGVLYHISNPNGDKTKVMVSIS 60

Query: 58  LPVPPPETIFIGGL-PFGAIEAIKAAYGNVVQILDPPRDGFNLTLKLNLSKLPPNEENKH 116
           L        F   L   GA E +K  YG+    L  P  G+N++L  +L  LP +   K 
Sbjct: 61  LK-------FYKELQAHGADELLKRVYGS---FLVNPESGYNVSLLYDLENLPAS---KD 107

Query: 117 ALLVKIASVREVVLGAPLRVVLKHLASKTVASDIDQLLALVHRPKESFFLIPQAEKVTVV 176
           +++ +   ++     +   V  K+   +    + +    + +R  E+ ++  + ++VTVV
Sbjct: 108 SIVHQAGMLKRNCFAS---VFEKYFQFQEEGKEGENRAVIHYRDDETMYVESKKDRVTVV 164

Query: 177 FPMRFNDSIDTVLATSFLQEFVEARRTAGLNNAPLCMWS-SSPPLELKGVPSETLSANAG 235
           F   F D  D V+   F+QEF E RR +  + AP  ++S   PPLELK   +  +  N G
Sbjct: 165 FSTVFKDDDDVVIGKVFMQEFKEGRRAS--HTAPQVLFSHREPPLELKDTDA-AVGDNIG 221

Query: 236 FVTFVIFPRHVEGKKLDRTVWNLSTFHAYVSYHVKCSEGFMHTRMRRRVESMIRTLDRAK 295
           ++TFV+FPRH      D T+  + TF  Y+ YH+KCS+ ++HTRMR +    ++ L+RA+
Sbjct: 222 YITFVLFPRHTNASARDNTINLIHTFRDYLHYHIKCSKAYIHTRMRAKTSDFLKVLNRAR 281

Query: 296 PDAEKLK-KSTSNKSF 310
           PDAEK + K+ + K+F
Sbjct: 282 PDAEKKEMKTITGKTF 297

Functions as actin-binding component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks. Seems to contact the mother actin filament.

Homo sapiens (taxid: 9606)

>sp|Q3MHR7|ARPC2_BOVIN Actin-related protein 2/3 complex subunit 2 OS=Bos taurus GN=ARPC2 PE=1 SV=1

 Score =  154 bits (388), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 99/316 (31%), Positives = 168/316 (53%), Gaps = 25/316 (7%)

Query: 1   MLLLQSHSRFLLEALLNRVQNV---DKATEVDYHWVEFDDVRYHVQVTMKNPHIVLLSVS 57
           M+LL+ ++R + E L  + +N    +K   V+  + +FD V YH+     +   V++S+S
Sbjct: 1   MILLEVNNRIIEETLALKFENAAAGNKPEAVEVTFADFDGVLYHISNPNGDKTKVMVSIS 60

Query: 58  LPVPPPETIFIGGL-PFGAIEAIKAAYGNVVQILDPPRDGFNLTLKLNLSKLPPNEENKH 116
           L        F   L   GA E +K  YG+    L  P  G+N++L  +L  LP +   K 
Sbjct: 61  LK-------FYKELQAHGADELLKRVYGSY---LVNPESGYNVSLLYDLENLPAS---KD 107

Query: 117 ALLVKIASVREVVLGAPLRVVLKHLASKTVASDIDQLLALVHRPKESFFLIPQAEKVTVV 176
           +++ +   ++     +   V  K+   +    + +    + +R  E+ ++  + ++VTVV
Sbjct: 108 SIVHQAGMLKRNCFAS---VFEKYFQFQEEGKEGENRAVIHYRDDETMYVESKKDRVTVV 164

Query: 177 FPMRFNDSIDTVLATSFLQEFVEARRTAGLNNAPLCMWS-SSPPLELKGVPSETLSANAG 235
           F   F D  D V+   F+QEF E RR +  + AP  ++S   PPLELK   +  +  N G
Sbjct: 165 FSTVFKDDDDVVIGKVFMQEFKEGRRAS--HTAPQVLFSHREPPLELKDTDA-AVGDNIG 221

Query: 236 FVTFVIFPRHVEGKKLDRTVWNLSTFHAYVSYHVKCSEGFMHTRMRRRVESMIRTLDRAK 295
           ++TFV+FPRH      D T+  + TF  Y+ YH+KCS+ ++HTRMR +    ++ L+RA+
Sbjct: 222 YITFVLFPRHTNASARDNTINLIHTFRDYLHYHIKCSKAYIHTRMRAKTSDFLKVLNRAR 281

Query: 296 PDAEKLK-KSTSNKSF 310
           PDAEK + K+ + K+F
Sbjct: 282 PDAEKKEMKTITGKTF 297

Functions as actin-binding component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks. Seems to contact the mother actin filament.

Bos taurus (taxid: 9913)

>sp|P85970|ARPC2_RAT Actin-related protein 2/3 complex subunit 2 OS=Rattus norvegicus GN=Arpc2 PE=1 SV=1

 Score =  154 bits (388), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 99/316 (31%), Positives = 168/316 (53%), Gaps = 25/316 (7%)

Query: 1   MLLLQSHSRFLLEALLNRVQNV---DKATEVDYHWVEFDDVRYHVQVTMKNPHIVLLSVS 57
           M+LL+ ++R + E L  + +N    +K   V+  + +FD V YH+     +   V++S+S
Sbjct: 1   MILLEVNNRIIEETLALKFENAAAGNKPEAVEVTFADFDGVLYHISNPNGDKTKVMVSIS 60

Query: 58  LPVPPPETIFIGGL-PFGAIEAIKAAYGNVVQILDPPRDGFNLTLKLNLSKLPPNEENKH 116
           L        F   L   GA E +K  YG+    L  P  G+N++L  +L  LP +   K 
Sbjct: 61  LK-------FYKELQAHGADELLKRVYGS---FLVNPESGYNVSLLYDLENLPAS---KD 107

Query: 117 ALLVKIASVREVVLGAPLRVVLKHLASKTVASDIDQLLALVHRPKESFFLIPQAEKVTVV 176
           +++ +   ++     +   V  K+   +    + +    + +R  E+ ++  + ++VTVV
Sbjct: 108 SIVHQAGMLKRNCFAS---VFEKYFQFQEEGKEGENRAVIHYRDDETMYVESKKDRVTVV 164

Query: 177 FPMRFNDSIDTVLATSFLQEFVEARRTAGLNNAPLCMWS-SSPPLELKGVPSETLSANAG 235
           F   F D  D V+   F+QEF E RR +  + AP  ++S   PPLELK   +  +  N G
Sbjct: 165 FSTVFKDDDDVVIGKVFMQEFKEGRRAS--HTAPQVLFSHREPPLELKDTDA-AVGDNIG 221

Query: 236 FVTFVIFPRHVEGKKLDRTVWNLSTFHAYVSYHVKCSEGFMHTRMRRRVESMIRTLDRAK 295
           ++TFV+FPRH      D T+  + TF  Y+ YH+KCS+ ++HTRMR +    ++ L+RA+
Sbjct: 222 YITFVLFPRHTNATARDNTINLIHTFRDYLHYHIKCSKAYIHTRMRAKTSDFLKVLNRAR 281

Query: 296 PDAEKLK-KSTSNKSF 310
           PDAEK + K+ + K+F
Sbjct: 282 PDAEKKEMKTITRKTF 297

Functions as actin-binding component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks. Seems to contact the mother actin filament.

Rattus norvegicus (taxid: 10116)

>sp|Q9CVB6|ARPC2_MOUSE Actin-related protein 2/3 complex subunit 2 OS=Mus musculus GN=Arpc2 PE=1 SV=3

 Score =  153 bits (387), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 99/316 (31%), Positives = 168/316 (53%), Gaps = 25/316 (7%)

Query: 1   MLLLQSHSRFLLEALLNRVQNV---DKATEVDYHWVEFDDVRYHVQVTMKNPHIVLLSVS 57
           M+LL+ ++R + E L  + +N    +K   V+  + +FD V YH+     +   V++S+S
Sbjct: 1   MILLEVNNRIIEETLALKFENAAAGNKPEAVEVTFADFDGVLYHISNPNGDKTKVMVSIS 60

Query: 58  LPVPPPETIFIGGL-PFGAIEAIKAAYGNVVQILDPPRDGFNLTLKLNLSKLPPNEENKH 116
           L        F   L   GA E +K  YG+    L  P  G+N++L  +L  LP +   K 
Sbjct: 61  LK-------FYKELQAHGADELLKRVYGS---FLVNPEPGYNVSLLYDLENLPAS---KD 107

Query: 117 ALLVKIASVREVVLGAPLRVVLKHLASKTVASDIDQLLALVHRPKESFFLIPQAEKVTVV 176
           +++ +   ++     +   V  K+   +    + +    + +R  E+ ++  + ++VTVV
Sbjct: 108 SIVHQAGMLKRNCFAS---VFEKYFQFQEEGKEGENRAVIHYRDDETMYVESKKDRVTVV 164

Query: 177 FPMRFNDSIDTVLATSFLQEFVEARRTAGLNNAPLCMWS-SSPPLELKGVPSETLSANAG 235
           F   F D  D V+   F+QEF E RR +  + AP  ++S   PPLELK   +  +  N G
Sbjct: 165 FSTVFKDDDDVVIGKVFMQEFKEGRRAS--HTAPQVLFSHREPPLELKDTDA-AVGDNIG 221

Query: 236 FVTFVIFPRHVEGKKLDRTVWNLSTFHAYVSYHVKCSEGFMHTRMRRRVESMIRTLDRAK 295
           ++TFV+FPRH      D T+  + TF  Y+ YH+KCS+ ++HTRMR +    ++ L+RA+
Sbjct: 222 YITFVLFPRHTNATARDNTINLIHTFRDYLHYHIKCSKAYIHTRMRAKTSDFLKVLNRAR 281

Query: 296 PDAEKLK-KSTSNKSF 310
           PDAEK + K+ + K+F
Sbjct: 282 PDAEKKEMKTITGKTF 297

Functions as actin-binding component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks. Seems to contact the mother actin filament.

Mus musculus (taxid: 10090)

>sp|Q9VIM5|ARPC2_DROME Probable actin-related protein 2/3 complex subunit 2 OS=Drosophila melanogaster GN=Arc-p34 PE=2 SV=2

 Score =  146 bits (369), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 93/320 (29%), Positives = 167/320 (52%), Gaps = 25/320 (7%)

Query: 1   MLLLQSHSRFLLEALLNRVQNVD---KATEVDYHWVEFDDVRYHVQVTMKNPHIVLLSVS 57
           M+LL+ ++R + E LL + +N     K   +D    +FD V YH+     +   V +S+S
Sbjct: 1   MILLEINNRIIEETLLVKYRNAQAGLKPESIDIRIADFDGVLYHISNVNGDKTKVRISIS 60

Query: 58  LPVPPPETIFIGGL-PFGAIEAIKAAYGNVVQILDPPRDGFNLTLKLNLSKLPPNEENKH 116
           L        F   L   GA E +K  YG+   +L    +G+N+++ +NL ++P   E+  
Sbjct: 61  LK-------FYKQLQEHGADELLKREYGS---LLTDTEEGYNVSVLINLEEIP---EDCE 107

Query: 117 ALLVKIASVREVVLGAPLRVVLKHLASKTVASDIDQLLALVHRPKESFFLIPQAEKVTVV 176
            +  +I  ++     +   V  K+   +    +  +   + +R  E+ ++  + ++VTVV
Sbjct: 108 QIAKRIGLLKRNCFAS---VFEKYFDYQEQGEEGQKRAVINYRNDETLYVEAKPDRVTVV 164

Query: 177 FPMRFNDSIDTVLATSFLQEFVEARRTAGLNNAPLCMWS-SSPPLELKGVPSETLSANAG 235
           F   F D  D ++   F+QE  E RR +  + AP  ++S   PPLEL    +  +  N G
Sbjct: 165 FSTIFRDEDDVIIGKVFMQELREGRRAS--HTAPQVLFSHREPPLELANTDAR-VGDNIG 221

Query: 236 FVTFVIFPRHVEGKKLDRTVWNLSTFHAYVSYHVKCSEGFMHTRMRRRVESMIRTLDRAK 295
           +VTFV+FPRH   +  D T+  +  F  Y+ YH+KCS+ ++H+RMR +    ++ L+RA+
Sbjct: 222 YVTFVLFPRHTNKETRDNTINLIHMFRDYLHYHIKCSKAYIHSRMRAKTSDFLKVLNRAR 281

Query: 296 PDAEKLKKST-SNKSFKRLS 314
           P+ +  +K T + ++FKR+ 
Sbjct: 282 PEPKNTEKKTITGRTFKRID 301

Functions as actin-binding component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks. Seems to contact the mother actin filament.

Drosophila melanogaster (taxid: 7227)

>sp|P53731|ARPC2_YEAST Actin-related protein 2/3 complex subunit 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ARC35 PE=1 SV=1

 Score =  143 bits (361), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 96/323 (29%), Positives = 163/323 (50%), Gaps = 30/323 (9%)

Query: 1   MLLLQSHSRFLLEALLNRVQNVDKAT--EVDYHWVEFDDVRYHVQVTMKNPHIVLLSVSL 58
           ML LQ  +  + + L   ++ + K +   +D    +FD   YH+  T ++  I+LLSV  
Sbjct: 1   MLHLQPQNLLIQKTLNEAIEALRKGSPLTMDRIVSDFDYTTYHISNTAEDKSILLLSVKT 60

Query: 59  P--VPPPETIFIGGLPFGAIEAIKAAYGNVVQILDPPRDGFNLTLKLNLSKLPPNEENKH 116
              V   E    G L      A   +    V I      G++ TL++ L++L        
Sbjct: 61  KAWVSVSECQLDGSLTLLKFLADHYSSLGGVTIPSEVEPGYDYTLQITLAELVQES---- 116

Query: 117 ALLVKIASVREVVLGAPLRVVLK---------------HLASKTVASDIDQ-LLALVHRP 160
             +++++ ++ ++L  P  + +                 +    VA++ D  L  + +R 
Sbjct: 117 --ILQLSVLKTIILSFPFELAISKFIELSQQQPAPVEAEITGGEVAANGDNTLFTIKYRD 174

Query: 161 KESFFLIPQAEKVTVVFPMRFNDSIDTVLATSFLQEFVEAR-RTAGLNNAPLCMWSSSPP 219
           +E+ F+ P  ++VT++F   F D  D +    FLQEFV+AR R   + +AP  ++S  PP
Sbjct: 175 EENIFIKPSNDRVTIIFETIFQDETDKIFGKVFLQEFVDARKRNRQIQSAPQVLYSHEPP 234

Query: 220 LELKGV--PSETLSANAGFVTFVIFPRHVEGKKLD-RTVWNLSTFHAYVSYHVKCSEGFM 276
           LELK +  P +    +  F+TFV+FPRH + K+L   ++  L+ F  Y  YH+KCS+ +M
Sbjct: 235 LELKRLYQPPKVAEQSRRFITFVLFPRHFQTKELQFHSICQLTLFRNYFHYHIKCSKAYM 294

Query: 277 HTRMRRRVESMIRTLDRAKPDAE 299
           H+RMR RV+S I+ L+RAK D +
Sbjct: 295 HSRMRFRVDSFIKVLNRAKVDED 317

Functions as actin-binding component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks. Seems to contact the mother actin filament.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	327
356526671	324	PREDICTED: actin-related protein 2/3 com	0.990	1.0	0.792	1e-154
224075397	324	predicted protein [Populus trichocarpa]	0.990	1.0	0.801	1e-152
225424319	328	PREDICTED: actin-related protein 2/3 com	0.969	0.966	0.823	1e-152
388504156	324	unknown [Lotus japonicus]	0.990	1.0	0.776	1e-151
224053635	324	predicted protein [Populus trichocarpa]	0.990	1.0	0.782	1e-149
357517353	375	Actin-related protein 2/3 complex subuni	0.990	0.864	0.767	1e-148
356559035	320	PREDICTED: actin-related protein 2/3 com	0.978	1.0	0.776	1e-147
118488545	318	unknown [Populus trichocarpa]	0.972	1.0	0.788	1e-147
449433447	320	PREDICTED: actin-related protein 2/3 com	0.957	0.978	0.785	1e-147
305690311	328	Arp2/3 complex p35 subunit [Nicotiana ta	0.969	0.966	0.766	1e-145

>gi|356526671|ref|XP_003531940.1| PREDICTED: actin-related protein 2/3 complex subunit 2-like [Glycine max]

 Score =  550 bits (1416), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 259/327 (79%), Positives = 295/327 (90%), Gaps = 3/327 (0%)

Query: 1   MLLLQSHSRFLLEALLNRVQNVDKATEVDYHWVEFDDVRYHVQVTMKNPHIVLLSVSLPV 60
           M+LLQSHSRFLL+ LLNR QN++K  E+D+HWVEFDDVRYH+QV+MKNPH++LLSVSLP 
Sbjct: 1   MILLQSHSRFLLQTLLNRAQNLEKGVELDHHWVEFDDVRYHIQVSMKNPHVLLLSVSLPT 60

Query: 61  PPPETIFIGGLPFGAIEAIKAAYGNVVQILDPPRDGFNLTLKLNLSKLPPNEENKHALLV 120
           P  ETIF+ GLPFGAIEAIKAAYGN+VQILDPPRDGFNLTLK+NLSKLP N+E KHA LV
Sbjct: 61  PSSETIFVCGLPFGAIEAIKAAYGNLVQILDPPRDGFNLTLKINLSKLPANQEQKHAFLV 120

Query: 121 KIASVREVVLGAPLRVVLKHLASKTVASDIDQLLALVHRPKESFFLIPQAEKVTVVFPMR 180
           K+AS+REVVLGAPLRV+L+HLA++TVA D+D L+ALVHRP ESFFL PQA+KVTVV+PMR
Sbjct: 121 KVASIREVVLGAPLRVILEHLAARTVALDMDPLVALVHRPNESFFLFPQADKVTVVYPMR 180

Query: 181 FNDSIDTVLATSFLQEFVEARRTAGLNNAPLCMWSSSPPLELKGVPSETLSANAGFVTFV 240
           FNDSID VLATSFLQEFVEARRTAGLNN P C WS +PPLELK VP++ LSANAGFVTFV
Sbjct: 181 FNDSIDIVLATSFLQEFVEARRTAGLNNTPPCSWSLTPPLELKEVPADALSANAGFVTFV 240

Query: 241 IFPRHVEGKKLDRTVWNLSTFHAYVSYHVKCSEGFMHTRMRRRVESMIRTLDRAKPDAEK 300
           IFPRHVEG+KLDRTVWNLSTFHAYVSYHVKCSEGFMHTRMRRRVES+I+ L+RAKPDAE 
Sbjct: 241 IFPRHVEGQKLDRTVWNLSTFHAYVSYHVKCSEGFMHTRMRRRVESLIQALNRAKPDAEN 300

Query: 301 LKKSTSNKSFKRLSLKDLKDHRSNSMS 327
            KK++ N+SFKRL    LK+ R+NS S
Sbjct: 301 SKKTSYNRSFKRLG---LKESRTNSFS 324

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224075397|ref|XP_002304616.1| predicted protein [Populus trichocarpa] gi|222842048|gb|EEE79595.1| predicted protein [Populus trichocarpa]

 Score =  543 bits (1400), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 262/327 (80%), Positives = 295/327 (90%), Gaps = 3/327 (0%)

Query: 1   MLLLQSHSRFLLEALLNRVQNVDKATEVDYHWVEFDDVRYHVQVTMKNPHIVLLSVSLPV 60
           M+LLQSHSRFLL+ LLNRVQN++KA E+DYHWVEFDDVRYH+ V+MKNP+++LLSVSLP+
Sbjct: 1   MILLQSHSRFLLQTLLNRVQNLEKAVELDYHWVEFDDVRYHILVSMKNPNVLLLSVSLPI 60

Query: 61  PPPETIFIGGLPFGAIEAIKAAYGNVVQILDPPRDGFNLTLKLNLSKLPPNEENKHALLV 120
           PPPE +FIGGLPFGAIEA+KAAYG VVQILDPPRDGFNLTLKLNL KLP +EE+++ALLV
Sbjct: 61  PPPEAVFIGGLPFGAIEALKAAYGVVVQILDPPRDGFNLTLKLNLGKLPLDEEHRYALLV 120

Query: 121 KIASVREVVLGAPLRVVLKHLASKTVASDIDQLLALVHRPKESFFLIPQAEKVTVVFPMR 180
           KIASVREVVLGAPLRVVLKHL+S+TV   ID LLALVHR KESFFL+PQ +KVTVVFPMR
Sbjct: 121 KIASVREVVLGAPLRVVLKHLSSRTVIPGIDGLLALVHRSKESFFLVPQPDKVTVVFPMR 180

Query: 181 FNDSIDTVLATSFLQEFVEARRTAGLNNAPLCMWSSSPPLELKGVPSETLSANAGFVTFV 240
           F DSID   ATSFLQEFVEAR TAGLNNAP C+WS +PPLELK  P+E LSANAGFV+FV
Sbjct: 181 FKDSIDIAFATSFLQEFVEARHTAGLNNAPPCLWSPNPPLELKEAPAEALSANAGFVSFV 240

Query: 241 IFPRHVEGKKLDRTVWNLSTFHAYVSYHVKCSEGFMHTRMRRRVESMIRTLDRAKPDAEK 300
           IFPRHVEGKKLDRTVWNLSTFHAYVSYHVKCSEGFMHTRMRRRVESMI+ LDRAKP  E+
Sbjct: 241 IFPRHVEGKKLDRTVWNLSTFHAYVSYHVKCSEGFMHTRMRRRVESMIQALDRAKPGVEE 300

Query: 301 LKKSTSNKSFKRLSLKDLKDHRSNSMS 327
            KKS +++SFKRLSLK+    R+NS+S
Sbjct: 301 KKKSPNSRSFKRLSLKEA---RANSIS 324

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225424319|ref|XP_002284770.1| PREDICTED: actin-related protein 2/3 complex subunit 2 isoform 1 [Vitis vinifera] gi|297737660|emb|CBI26861.3| unnamed protein product [Vitis vinifera]

 Score =  543 bits (1398), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 261/317 (82%), Positives = 285/317 (89%)

Query: 1   MLLLQSHSRFLLEALLNRVQNVDKATEVDYHWVEFDDVRYHVQVTMKNPHIVLLSVSLPV 60
           M+LLQS SRFLL+ LLNRVQN++K  E+DY WVEFDDVRYHVQV+MK P  +LLSVSLP 
Sbjct: 1   MILLQSPSRFLLQTLLNRVQNLEKGVELDYQWVEFDDVRYHVQVSMKYPQFLLLSVSLPT 60

Query: 61  PPPETIFIGGLPFGAIEAIKAAYGNVVQILDPPRDGFNLTLKLNLSKLPPNEENKHALLV 120
           P  E +F GGLPFGAIEAIKA+YG +VQILDPP+DGFNLTLKLNLSKLPP+EE KHALLV
Sbjct: 61  PAQEAVFSGGLPFGAIEAIKASYGVLVQILDPPKDGFNLTLKLNLSKLPPDEEYKHALLV 120

Query: 121 KIASVREVVLGAPLRVVLKHLASKTVASDIDQLLALVHRPKESFFLIPQAEKVTVVFPMR 180
           KIASVREVVLGAPLRVVLKHLAS+TVA DI++  ALVHRPKESFFL+PQAEKVTVVFPMR
Sbjct: 121 KIASVREVVLGAPLRVVLKHLASRTVAPDINRPFALVHRPKESFFLVPQAEKVTVVFPMR 180

Query: 181 FNDSIDTVLATSFLQEFVEARRTAGLNNAPLCMWSSSPPLELKGVPSETLSANAGFVTFV 240
           F DSIDTVLATSFLQEFVEARRTAGLNNAP C+WS SPPLEL+G   E LSANAGFVTFV
Sbjct: 181 FKDSIDTVLATSFLQEFVEARRTAGLNNAPPCLWSPSPPLELRGTAGEALSANAGFVTFV 240

Query: 241 IFPRHVEGKKLDRTVWNLSTFHAYVSYHVKCSEGFMHTRMRRRVESMIRTLDRAKPDAEK 300
           IFPRHVEGKKLDRTVW+LSTF AYVSYHVKCSEGFMHTRMRRRVES+I+ LDRAKPD EK
Sbjct: 241 IFPRHVEGKKLDRTVWSLSTFRAYVSYHVKCSEGFMHTRMRRRVESLIQALDRAKPDLEK 300

Query: 301 LKKSTSNKSFKRLSLKD 317
            KK+   +SFKRLSLK+
Sbjct: 301 SKKTVQGRSFKRLSLKE 317

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388504156|gb|AFK40144.1| unknown [Lotus japonicus]

 Score =  541 bits (1393), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 254/327 (77%), Positives = 294/327 (89%), Gaps = 3/327 (0%)

Query: 1   MLLLQSHSRFLLEALLNRVQNVDKATEVDYHWVEFDDVRYHVQVTMKNPHIVLLSVSLPV 60
           M+LLQSHSRFLL+ LLNR QN++K  E+D+HWVEFDDVRYH+QV+MKNPHI+LLSVSLP 
Sbjct: 1   MILLQSHSRFLLQTLLNRAQNIEKGVELDHHWVEFDDVRYHIQVSMKNPHILLLSVSLPT 60

Query: 61  PPPETIFIGGLPFGAIEAIKAAYGNVVQILDPPRDGFNLTLKLNLSKLPPNEENKHALLV 120
           P  ETIF+ GLPFGAIEAIKA YG +VQILDPP+DGFNLTLK+NLSK+P N+E +HA LV
Sbjct: 61  PSSETIFVCGLPFGAIEAIKATYGGIVQILDPPKDGFNLTLKINLSKIPANQEQRHAFLV 120

Query: 121 KIASVREVVLGAPLRVVLKHLASKTVASDIDQLLALVHRPKESFFLIPQAEKVTVVFPMR 180
           K+ASVREVVLGAPLRV+LKHLAS+TVA D+D ++ALVHRPKESFFL+PQA+KVTVV+PMR
Sbjct: 121 KVASVREVVLGAPLRVILKHLASRTVAPDMDPVVALVHRPKESFFLLPQADKVTVVYPMR 180

Query: 181 FNDSIDTVLATSFLQEFVEARRTAGLNNAPLCMWSSSPPLELKGVPSETLSANAGFVTFV 240
           FNDSID VLATSFLQEFVEARRTAGL+N P C WS +PPLELK +P++ LSANAGFV+FV
Sbjct: 181 FNDSIDMVLATSFLQEFVEARRTAGLSNTPPCSWSHTPPLELKELPADALSANAGFVSFV 240

Query: 241 IFPRHVEGKKLDRTVWNLSTFHAYVSYHVKCSEGFMHTRMRRRVESMIRTLDRAKPDAEK 300
           IFPRHVEG KLDRTVW+LSTFHAYVSYHVKCSEGFMHTRMRRRVE++I+ LDRAKP+ E 
Sbjct: 241 IFPRHVEGPKLDRTVWSLSTFHAYVSYHVKCSEGFMHTRMRRRVETLIQALDRAKPEPED 300

Query: 301 LKKSTSNKSFKRLSLKDLKDHRSNSMS 327
            KK+++N+SFKRLS   LKD R NS S
Sbjct: 301 SKKTSNNRSFKRLS---LKDSRVNSFS 324

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224053635|ref|XP_002297905.1| predicted protein [Populus trichocarpa] gi|222845163|gb|EEE82710.1| predicted protein [Populus trichocarpa]

 Score =  533 bits (1374), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 256/327 (78%), Positives = 291/327 (88%), Gaps = 3/327 (0%)

Query: 1   MLLLQSHSRFLLEALLNRVQNVDKATEVDYHWVEFDDVRYHVQVTMKNPHIVLLSVSLPV 60
           M+LLQS SRFLL+ LLNRVQN++KA E+DY WVEF DVRYH+ V+ KNP+++LLSVSLP 
Sbjct: 1   MILLQSQSRFLLQTLLNRVQNLEKAVELDYLWVEFSDVRYHILVSTKNPNVLLLSVSLPT 60

Query: 61  PPPETIFIGGLPFGAIEAIKAAYGNVVQILDPPRDGFNLTLKLNLSKLPPNEENKHALLV 120
           PPPE +FIGGLP GAIEAIKAAYG VV ILDPPRDGFNLTLKLNL+KLPP+EE+++ALLV
Sbjct: 61  PPPEAVFIGGLPGGAIEAIKAAYGVVVHILDPPRDGFNLTLKLNLAKLPPDEEHRYALLV 120

Query: 121 KIASVREVVLGAPLRVVLKHLASKTVASDIDQLLALVHRPKESFFLIPQAEKVTVVFPMR 180
           KIASVREVVLGAPLRVVLKHLAS+TV  D+D++LALVHRPKESFFL+ Q +KVTVVFPMR
Sbjct: 121 KIASVREVVLGAPLRVVLKHLASRTVVPDVDRVLALVHRPKESFFLVSQPDKVTVVFPMR 180

Query: 181 FNDSIDTVLATSFLQEFVEARRTAGLNNAPLCMWSSSPPLELKGVPSETLSANAGFVTFV 240
           F DSIDT  ATSFLQEFVEARR AGLNNAP C+WS +PPLEL   P+E LSANAGFV+FV
Sbjct: 181 FKDSIDTAFATSFLQEFVEARRAAGLNNAPPCLWSPTPPLELNEAPAEALSANAGFVSFV 240

Query: 241 IFPRHVEGKKLDRTVWNLSTFHAYVSYHVKCSEGFMHTRMRRRVESMIRTLDRAKPDAEK 300
           IFPRHVEGKKLDRTVWNLSTFHAYVSYHVKCSEGFMHTRMRRRVES+I+ LDRAKP  E+
Sbjct: 241 IFPRHVEGKKLDRTVWNLSTFHAYVSYHVKCSEGFMHTRMRRRVESLIQALDRAKPGGEE 300

Query: 301 LKKSTSNKSFKRLSLKDLKDHRSNSMS 327
            KKS +++SFKRLS   L + R+NS+S
Sbjct: 301 KKKSPNSRSFKRLS---LSEARANSIS 324

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357517353|ref|XP_003628965.1| Actin-related protein 2/3 complex subunit [Medicago truncatula] gi|355522987|gb|AET03441.1| Actin-related protein 2/3 complex subunit [Medicago truncatula]

 Score =  531 bits (1369), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 251/327 (76%), Positives = 292/327 (89%), Gaps = 3/327 (0%)

Query: 1   MLLLQSHSRFLLEALLNRVQNVDKATEVDYHWVEFDDVRYHVQVTMKNPHIVLLSVSLPV 60
           M+LLQSHSRFLL+ LLNR+QN++K  E+D+HWVEFDDVRYH+QV+MKNP+I LLSVSLP 
Sbjct: 52  MILLQSHSRFLLQTLLNRLQNIEKGVELDHHWVEFDDVRYHIQVSMKNPNIFLLSVSLPT 111

Query: 61  PPPETIFIGGLPFGAIEAIKAAYGNVVQILDPPRDGFNLTLKLNLSKLPPNEENKHALLV 120
           P  ETIF+ GLPFGAIEAIKAAYG++VQILDPPRDGFNLTLK+NLSK+P N+E + ALLV
Sbjct: 112 PSSETIFVCGLPFGAIEAIKAAYGSLVQILDPPRDGFNLTLKINLSKVPANQEQRQALLV 171

Query: 121 KIASVREVVLGAPLRVVLKHLASKTVASDIDQLLALVHRPKESFFLIPQAEKVTVVFPMR 180
           K+ASVREVVLGAPLRV+LKHLAS+ VA D+D L+ALVHRPKESFF+ PQA+KVTV++PMR
Sbjct: 172 KVASVREVVLGAPLRVILKHLASRNVAPDMDPLVALVHRPKESFFVFPQADKVTVMYPMR 231

Query: 181 FNDSIDTVLATSFLQEFVEARRTAGLNNAPLCMWSSSPPLELKGVPSETLSANAGFVTFV 240
           FNDSID VLATSFLQEFVEARRTAGLNN P C WS +PP ELKGV ++ LSANAGFV+FV
Sbjct: 232 FNDSIDIVLATSFLQEFVEARRTAGLNNTPPCSWSHTPPPELKGVSTDALSANAGFVSFV 291

Query: 241 IFPRHVEGKKLDRTVWNLSTFHAYVSYHVKCSEGFMHTRMRRRVESMIRTLDRAKPDAEK 300
           IFPRHVEG KLDRTVW+LSTFHAYVSYHVKCSEGFMHTRMRRRVES+I+ L RAKPD E 
Sbjct: 292 IFPRHVEGPKLDRTVWSLSTFHAYVSYHVKCSEGFMHTRMRRRVESLIQALGRAKPDPES 351

Query: 301 LKKSTSNKSFKRLSLKDLKDHRSNSMS 327
            KK++ ++SF+R+S   LK+ R+NS S
Sbjct: 352 SKKTSHSRSFQRMS---LKESRTNSFS 375

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356559035|ref|XP_003547807.1| PREDICTED: actin-related protein 2/3 complex subunit 2 [Glycine max]

 Score =  528 bits (1360), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 254/327 (77%), Positives = 288/327 (88%), Gaps = 7/327 (2%)

Query: 1   MLLLQSHSRFLLEALLNRVQNVDKATEVDYHWVEFDDVRYHVQVTMKNPHIVLLSVSLPV 60
           M+LLQSH RFL + LL   QN++K  E+D+HWVEFDDVRYH+QV+MKNPH++LLSVSLP 
Sbjct: 1   MILLQSHFRFLFQPLLIGPQNLEKGVELDHHWVEFDDVRYHIQVSMKNPHVLLLSVSLPT 60

Query: 61  PPPETIFIGGLPFGAIEAIKAAYGNVVQILDPPRDGFNLTLKLNLSKLPPNEENKHALLV 120
           P  ETIF+ GLPFGAIEAIKAAYGN+VQILDPPRDGFNLTLK+NLSKLP N+E KHA LV
Sbjct: 61  PSSETIFVCGLPFGAIEAIKAAYGNLVQILDPPRDGFNLTLKINLSKLPANQEQKHAFLV 120

Query: 121 KIASVREVVLGAPLRVVLKHLASKTVASDIDQLLALVHRPKESFFLIPQAEKVTVVFPMR 180
           K+AS+REVVLGAPLRV+L+HLA++TVA D+D L+ALVHRP ESFFL PQA+KVTVV+PMR
Sbjct: 121 KVASIREVVLGAPLRVILEHLAARTVAPDLDPLVALVHRPNESFFLFPQADKVTVVYPMR 180

Query: 181 FNDSIDTVLATSFLQEFVEARRTAGLNNAPLCMWSSSPPLELKGVPSETLSANAGFVTFV 240
           FNDSID VLATSFLQEFVEARRTAGLNN P C WS +PPLELK VP    +ANAGFVTFV
Sbjct: 181 FNDSIDIVLATSFLQEFVEARRTAGLNNTPPCSWSLTPPLELKEVP----AANAGFVTFV 236

Query: 241 IFPRHVEGKKLDRTVWNLSTFHAYVSYHVKCSEGFMHTRMRRRVESMIRTLDRAKPDAEK 300
           IFPRHVEG+KLDRTVWNLSTFHAYVSYHVKCSEGFMHTRMRRRVES+I+ L+RAKPD E 
Sbjct: 237 IFPRHVEGQKLDRTVWNLSTFHAYVSYHVKCSEGFMHTRMRRRVESLIQALNRAKPDVEN 296

Query: 301 LKKSTSNKSFKRLSLKDLKDHRSNSMS 327
            KK++ N+SFKRLS   LKD R+NS S
Sbjct: 297 SKKTSYNRSFKRLS---LKDSRTNSFS 320

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118488545|gb|ABK96085.1| unknown [Populus trichocarpa]

 Score =  528 bits (1359), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 258/327 (78%), Positives = 290/327 (88%), Gaps = 9/327 (2%)

Query: 1   MLLLQSHSRFLLEALLNRVQNVDKATEVDYHWVEFDDVRYHVQVTMKNPHIVLLSVSLPV 60
           M+LLQSHSRFLL+ LLNRVQN++KA E+DYHWVEFDDV      +MKNP+++LLSVSLP+
Sbjct: 1   MILLQSHSRFLLQTLLNRVQNLEKAVELDYHWVEFDDV------SMKNPNVLLLSVSLPI 54

Query: 61  PPPETIFIGGLPFGAIEAIKAAYGNVVQILDPPRDGFNLTLKLNLSKLPPNEENKHALLV 120
           PPPE +FIGGLPFGAIEA+KAAYG VVQILDPPRDGFNLTLKLNL KLP +EE+++ALLV
Sbjct: 55  PPPEAVFIGGLPFGAIEALKAAYGVVVQILDPPRDGFNLTLKLNLGKLPLDEEHRYALLV 114

Query: 121 KIASVREVVLGAPLRVVLKHLASKTVASDIDQLLALVHRPKESFFLIPQAEKVTVVFPMR 180
           KIASVREVVLGAPLRVVLKHL+S+TV   ID LLALVHR KESFFL+PQ +KVTVVFPMR
Sbjct: 115 KIASVREVVLGAPLRVVLKHLSSRTVIPGIDGLLALVHRSKESFFLVPQPDKVTVVFPMR 174

Query: 181 FNDSIDTVLATSFLQEFVEARRTAGLNNAPLCMWSSSPPLELKGVPSETLSANAGFVTFV 240
           F DSID   ATSFLQEFVEAR TAGLNNAP C+WS +PPLELK  P+E LSANAGFV+FV
Sbjct: 175 FKDSIDIAFATSFLQEFVEARHTAGLNNAPPCLWSPNPPLELKEAPAEALSANAGFVSFV 234

Query: 241 IFPRHVEGKKLDRTVWNLSTFHAYVSYHVKCSEGFMHTRMRRRVESMIRTLDRAKPDAEK 300
           IFPRHVEGKKLDRTVWNLSTFHAYVSYHVKCSEGFMHTRMRRRVESMI+ LDRAKP  E+
Sbjct: 235 IFPRHVEGKKLDRTVWNLSTFHAYVSYHVKCSEGFMHTRMRRRVESMIQALDRAKPGVEE 294

Query: 301 LKKSTSNKSFKRLSLKDLKDHRSNSMS 327
            KKS +++SFKRLS   LK+ R+NS+S
Sbjct: 295 KKKSPNSRSFKRLS---LKEARANSIS 318

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449433447|ref|XP_004134509.1| PREDICTED: actin-related protein 2/3 complex subunit 2-like [Cucumis sativus]

 Score =  525 bits (1353), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 246/313 (78%), Positives = 282/313 (90%)

Query: 1   MLLLQSHSRFLLEALLNRVQNVDKATEVDYHWVEFDDVRYHVQVTMKNPHIVLLSVSLPV 60
           M+LLQSHSRFLL+ LLNRV N++KA EVDY+WVEFDDVRYHVQV+MKNPH+ LLSVSLP+
Sbjct: 1   MILLQSHSRFLLQTLLNRVHNLEKAVEVDYNWVEFDDVRYHVQVSMKNPHLFLLSVSLPI 60

Query: 61  PPPETIFIGGLPFGAIEAIKAAYGNVVQILDPPRDGFNLTLKLNLSKLPPNEENKHALLV 120
           P  +T+F GGLP GAIEAIKAAYG +VQILDPPRDGFNLTLKLNLSKLP +E+N+H +LV
Sbjct: 61  PSADTVFCGGLPSGAIEAIKAAYGILVQILDPPRDGFNLTLKLNLSKLPLDEDNRHTILV 120

Query: 121 KIASVREVVLGAPLRVVLKHLASKTVASDIDQLLALVHRPKESFFLIPQAEKVTVVFPMR 180
           K+AS+REVVLGAPLR +LK L S+ VASD+++L+ALVHRPKESFFL+PQAEKVTVVFPMR
Sbjct: 121 KVASIREVVLGAPLRGILKQLGSRVVASDVNKLVALVHRPKESFFLVPQAEKVTVVFPMR 180

Query: 181 FNDSIDTVLATSFLQEFVEARRTAGLNNAPLCMWSSSPPLELKGVPSETLSANAGFVTFV 240
           F DSID  LATSFLQEFVEARRTAGLNNAP C WS SPP ELKG PS+ LSANAGFVTFV
Sbjct: 181 FKDSIDIALATSFLQEFVEARRTAGLNNAPPCSWSLSPPQELKGAPSDALSANAGFVTFV 240

Query: 241 IFPRHVEGKKLDRTVWNLSTFHAYVSYHVKCSEGFMHTRMRRRVESMIRTLDRAKPDAEK 300
           IF RHVEGK++DR +W+LSTFHAYVSYHVKCSEGFMHTRMRRRVES+I+ LDRAKPDA +
Sbjct: 241 IFTRHVEGKRVDRVIWSLSTFHAYVSYHVKCSEGFMHTRMRRRVESLIQALDRAKPDAIE 300

Query: 301 LKKSTSNKSFKRL 313
            ++ T ++SFKRL
Sbjct: 301 TRRKTHSRSFKRL 313

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|305690311|gb|ADM64536.1| Arp2/3 complex p35 subunit [Nicotiana tabacum]

 Score =  520 bits (1340), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 243/317 (76%), Positives = 284/317 (89%)

Query: 1   MLLLQSHSRFLLEALLNRVQNVDKATEVDYHWVEFDDVRYHVQVTMKNPHIVLLSVSLPV 60
           M+LLQS SR+LL+ L NRVQN++K  E+D  WVEFDD+RYH+Q ++KNP+++LLSVSLP+
Sbjct: 1   MILLQSPSRYLLQILSNRVQNLEKGVELDCQWVEFDDIRYHIQASVKNPNVLLLSVSLPI 60

Query: 61  PPPETIFIGGLPFGAIEAIKAAYGNVVQILDPPRDGFNLTLKLNLSKLPPNEENKHALLV 120
           PPPET+  GGLP GA+EAIKAAYG V QILDPPRDGFNLTLKLNLSKLPP+EE+KHALL 
Sbjct: 61  PPPETVLFGGLPLGALEAIKAAYGVVAQILDPPRDGFNLTLKLNLSKLPPDEEHKHALLT 120

Query: 121 KIASVREVVLGAPLRVVLKHLASKTVASDIDQLLALVHRPKESFFLIPQAEKVTVVFPMR 180
           KIASVREVV+GAPLR VLKHL S+TV SD+ + +ALVHRP ESFFL+PQ +KVTV+FPMR
Sbjct: 121 KIASVREVVMGAPLRAVLKHLVSRTVPSDLGKPVALVHRPNESFFLVPQVDKVTVIFPMR 180

Query: 181 FNDSIDTVLATSFLQEFVEARRTAGLNNAPLCMWSSSPPLELKGVPSETLSANAGFVTFV 240
           FNDS+DTVLATSFLQEFVEARRTAGLNNAP C+WS S P ELK   +E LSANAGFV+FV
Sbjct: 181 FNDSVDTVLATSFLQEFVEARRTAGLNNAPPCLWSPSAPQELKEAFTEALSANAGFVSFV 240

Query: 241 IFPRHVEGKKLDRTVWNLSTFHAYVSYHVKCSEGFMHTRMRRRVESMIRTLDRAKPDAEK 300
           IFPRHVEG+KLDRTVWNLSTFHAYV+YHVKCSE FMHTRMRR+VES+I+ LDRAKPD+EK
Sbjct: 241 IFPRHVEGRKLDRTVWNLSTFHAYVNYHVKCSECFMHTRMRRQVESLIQALDRAKPDSEK 300

Query: 301 LKKSTSNKSFKRLSLKD 317
            K+S+ ++SFKR+SLKD
Sbjct: 301 AKRSSPSRSFKRMSLKD 317

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	327
TAIR|locus:505006160	318	DIS2 "AT1G30825" [Arabidopsis	0.969	0.996	0.692	3.8e-117
UNIPROTKB|G4MTR0	319	MGG_04745 "ARP2/3 complex 34 k	0.914	0.937	0.300	5.5e-38
DICTYBASE|DDB_G0282813	293	arcB "actin related protein 2/	0.691	0.771	0.367	1.9e-37
POMBASE|SPAC6F6.10c	317	arc2 "ARP2/3 actin-organizing	0.920	0.949	0.305	3.5e-36
ZFIN|ZDB-GENE-030131-5276	299	arpc2 "actin related protein 2	0.908	0.993	0.321	3.5e-36
WB|WBGene00021170	301	arx-4 [Caenorhabditis elegans	0.899	0.976	0.300	5.1e-35
ASPGD|ASPL0000057561	320	AN0306 [Emericella nidulans (t	0.917	0.937	0.269	2e-33
UNIPROTKB|F1P1K3	308	ARPC2 "Uncharacterized protein	0.899	0.954	0.303	1.8e-32
UNIPROTKB|O15144	300	ARPC2 "Actin-related protein 2	0.899	0.98	0.300	3.7e-32
UNIPROTKB|Q3MHR7	300	ARPC2 "Actin-related protein 2	0.899	0.98	0.300	4.7e-32

TAIR|locus:505006160 DIS2 "AT1G30825" [Arabidopsis thaliana (taxid:3702)]

 Score = 1154 (411.3 bits), Expect = 3.8e-117, P = 3.8e-117
 Identities = 225/325 (69%), Positives = 265/325 (81%)

Query:     1 MLLLQSHSRFLLEALLNRVQNVDKATEVDYHWVEFDDVRYHVQVTMKNPHIXXXXXXXXX 60
             M+LLQSHSRFLL+ LL R QN+DKA E+DY W+EFDDVRYHVQVTMKNP++         
Sbjct:     1 MILLQSHSRFLLQTLLTRAQNLDKAVELDYQWIEFDDVRYHVQVTMKNPNLLLLSVSLPN 60

Query:    61 XXXETIFIGGLPFGAIEAIKAAYGNVVQILDPPRDGFNLTLKLNLSKLPPNEENKHALLV 120
                E +   GLP GAIEAIK  YG   QILDPPRDGF+LTLKLN SK+ P+EE    LL 
Sbjct:    61 PPPEAMSFDGLPLGAIEAIKTTYGTGFQILDPPRDGFSLTLKLNFSKVRPDEE----LLT 116

Query:   121 KIASVREVVLGAPLRVVLKHLASKTVASDIDQLLALVHRPKESFFLIPQAEKVTVVFPMR 180
             K+AS+REVV+GAPL+++ KHLAS+TVA ++D+L+A++HRP E+FFL+PQA+KVTV FPMR
Sbjct:   117 KLASIREVVMGAPLKIIFKHLASRTVAPELDRLVAIMHRPNETFFLVPQADKVTVAFPMR 176

Query:   181 FNDSIDTVLATSFLQEFVEARRTAGLNNAPLCMWSSSPPLELKGVPSETLSANAGFVTFV 240
             F DS+DT+LATSFL+EFVEARR A LN AP C WS + P EL+G P ETLSANAGFVTFV
Sbjct:   177 FKDSVDTILATSFLKEFVEARRAAALNTAPSCSWSPTAPQELEGAPKETLSANAGFVTFV 236

Query:   241 IFPRHVEGKKLDRTVWNLSTFHAYVSYHVKCSEGFMHTRMRRRVESMIRTLDRAKPDAEK 300
             IFPRHVEGKKLDRTVWNLSTFHAYVSYHVK SEGFMHTRMRRRVESMI+ LD+AKP  EK
Sbjct:   237 IFPRHVEGKKLDRTVWNLSTFHAYVSYHVKFSEGFMHTRMRRRVESMIQALDQAKP-LEK 295

Query:   301 LKKSTSNKSFKRLSLKDLKDHRSNS 325
              + S +NKSFKRL L ++ +H +NS
Sbjct:   296 TR-SMNNKSFKRLGLNEV-NH-TNS 317

GO:0005198 "structural molecule activity" evidence=ISS

GO:0005856 "cytoskeleton" evidence=IEA

GO:0030833 "regulation of actin filament polymerization" evidence=IEA

GO:0007015 "actin filament organization" evidence=TAS

GO:0005885 "Arp2/3 protein complex" evidence=TAS

GO:0010090 "trichome morphogenesis" evidence=NAS

UNIPROTKB|G4MTR0 MGG_04745 "ARP2/3 complex 34 kDa subunit" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 407 (148.3 bits), Expect = 5.5e-38, P = 5.5e-38
 Identities = 98/326 (30%), Positives = 170/326 (52%)

Query:     2 LLLQSHSRFLLEALLNRVQNVDKATEVDYHWVEFDDVRYHVQVTMKNPHIXXXXXXXXXX 61
             +LL  +   L++++L    +      +D    +FD V +H+        I          
Sbjct:     1 MLLLDYQNVLIQSVLTERFSGAPPVSIDQTVSDFDGVIFHISTPESKTKILVSLQIRCYK 60

Query:    62 XXETIFIGGLPFGAIEAIKAAYGNVVQILDPPRDGFNLTLKLNLSKLPPNEENKHALLVK 121
                      + +GA + +   YG   Q + PP  G++ ++ ++L  LP   E +  L+ K
Sbjct:    61 DL-------VKYGAEDVLNREYG---QYVVPPEPGYDFSVMVDLENLPSEPEAREELVKK 110

Query:   122 IASVREVVLGAPLRVV------LKHLASKTVASDIDQ-------LLALVHRPKESFFLIP 168
             I+ ++   + AP          LK  ASK  + +  Q       ++A+ +R +E+ ++  
Sbjct:   111 ISLLKRNAMAAPFEHAYAEHYKLKEEASKYTSEEAPQGIREGGEVMAIHYREEEAIYVKA 170

Query:   169 QAEKVTVVFPMRFNDSIDTVLATSFLQEFVEARRTAGLNNAPLCMWSSSPPLELKGVPS- 227
               ++VTV+F   F +  D V    F+QEFV+ARR A + NAP  ++ + PPLEL+GVP  
Sbjct:   171 SFDRVTVIFSTIFREETDRVYGKVFIQEFVDARRRA-IQNAPQVLFRNDPPLELQGVPGV 229

Query:   228 -ETLSANAGFVTFVIFPRHVEGKKLDRTVWNLSTFHAYVSYHVKCSEGFMHTRMRRRVES 286
              +T +   G+VTFV+FPRH+  +++   + ++ TF  Y  YH+K S+ ++HTRMRRR   
Sbjct:   230 KDTGTGEIGYVTFVLFPRHLTPQRMPDVISHIQTFRDYFHYHIKASKAYIHTRMRRRTAD 289

Query:   287 MIRTLDRAKPDAE-KLKKSTSNKSFK 311
              ++ L RA+PD+E K +K+ S ++FK
Sbjct:   290 FLQVLRRARPDSEEKERKTASGRTFK 315

GO:0003674 "molecular_function" evidence=ND

DICTYBASE|DDB_G0282813 arcB "actin related protein 2/3 complex, subunit 2" [Dictyostelium discoideum (taxid:44689)]

 Score = 402 (146.6 bits), Expect = 1.9e-37, P = 1.9e-37
 Identities = 89/242 (36%), Positives = 146/242 (60%)

Query:    74 GAIEAIKAAYGNVVQILDPPRDGFNLTLKLNLSKLPPNEENKHALLVKIASVREVVLGAP 133
             G    +K+ YG+++Q    P  G+++TL +  S       NK  L  K++ ++  ++ AP
Sbjct:    64 GGSALLKSVYGDMLQA--KPEGGYDVTLVIQSSF----SGNKEELAKKVSLLKRHLVAAP 117

Query:   134 LRVVLKHLASKTVASDIDQLLALVHRPKESFFLIPQAEKVTVVFPMRFNDSIDTVLATSF 193
               +V + + +K     + +++A+ +R  E+F+L PQ + V V+F + F D+ D +L+  F
Sbjct:   118 FLMVFEGIEAK---KPLPEIIAINYRTDETFYLKPQGDNVIVIFDIAFKDADDVILSKIF 174

Query:   194 LQEFVEARRTAGLNNAPLCMWSSS-PPLELKGVPSETLS-ANAGFVTFVIFPRHVEGKKL 251
             LQ FV+ R+T  ++N P   +S   PPLELKGV       AN GFV+FV+FP H+  KK 
Sbjct:   175 LQSFVDVRKT--ISNVPSITFSQKDPPLELKGVKGVRAGQANHGFVSFVLFPAHI--KKP 230

Query:   252 DRTVWNLSTFHAYVSYHVKCSEGFMHTRMRRRVESMIRTLDRAKPD-AEKLKKSTSNKSF 310
               +   + TF  Y+ YH+KC++G+MHT MR RVES+I+ L+RAKP+    +K++ + K F
Sbjct:   231 QESADLIQTFRDYLHYHIKCAKGYMHTSMRNRVESLIQVLNRAKPEPVNTVKRTITGKFF 290

Query:   311 KR 312
             K+
Sbjct:   291 KQ 292

GO:0030670 "phagocytic vesicle membrane" evidence=IDA

GO:0006909 "phagocytosis" evidence=IEP

GO:0006887 "exocytosis" evidence=IEP

GO:0031982 "vesicle" evidence=IDA

GO:0030041 "actin filament polymerization" evidence=IMP;TAS

GO:0005885 "Arp2/3 protein complex" evidence=IDA

GO:0030864 "cortical actin cytoskeleton" evidence=IC

GO:0030175 "filopodium" evidence=IC

GO:0051015 "actin filament binding" evidence=TAS

GO:0045335 "phagocytic vesicle" evidence=TAS

GO:0045010 "actin nucleation" evidence=TAS

GO:0030042 "actin filament depolymerization" evidence=TAS

GO:0006928 "cellular component movement" evidence=TAS

GO:0031252 "cell leading edge" evidence=IC

GO:0031143 "pseudopodium" evidence=IEA;IC

GO:0030833 "regulation of actin filament polymerization" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0042995 "cell projection" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

GO:0005938 "cell cortex" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005905 "coated pit" evidence=IDA

GO:0044351 "macropinocytosis" evidence=RCA

POMBASE|SPAC6F6.10c arc2 "ARP2/3 actin-organizing complex subunit Arc34" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 390 (142.3 bits), Expect = 3.5e-36, P = 3.5e-36
 Identities = 100/327 (30%), Positives = 166/327 (50%)

Query:     1 MLLLQSHSRFLLEALLNRVQNVDKATEVDYHWVEFDDVRYHVQVTMKNPHIXXXXXXXXX 60
             ML L  ++ F+ E L  R  + +  + +D    +FD V +H+    +   I         
Sbjct:     1 MLSLDYNNIFIYELLTERFSS-ENPSSIDQVVTDFDGVTFHISTPEEKTKILISLSMKCY 59

Query:    61 XXXETIFIGGLPFGAIEAIKAAYGNVVQILDPPRDGFNLTLKLNLSKLPPNEENKHALLV 120
                E +      +G ++ +K  YG  V     P  G+N ++ ++L +LP  +E K  L +
Sbjct:    60 P--ELV-----NYGTLDLLKQIYGAYVH---EPEMGYNFSILIDLQQLPATDEEKEQLAM 109

Query:   121 KIASVREVVLGAPL-RVVLKH-----LASKTV--ASDID------QLLALVHRPKESFFL 166
              I+ ++  VL AP  R   K      LA K    A  +D      +L+A+ +R +E+  L
Sbjct:   110 SISMLKRNVLAAPFHRAFTKQAELADLARKDPENAPMLDKQATSQELMAIHYRDEETIVL 169

Query:   167 IPQAEKVTVVFPMRFNDSIDTVLATSFLQEFVEARRTAGLNNAPLCMWS-SSPPLELKGV 225
              P+ ++VTVVF  +F +  D +    FLQEFV+ARR   +  AP  ++S   PPLE++ +
Sbjct:   170 WPEHDRVTVVFSTKFREETDRIFGKVFLQEFVDARRRPAIQTAPQVLFSYRDPPLEIRDI 229

Query:   226 PSETLSANAGFVTFVIFPRHVEGKKLDRTVWNLSTFHAYVSYHVKCSEGFMHTRMRRRVE 285
                    + GFVTFV+F RH   +  +  + ++  F   + +H+K S+ +MH RMR+RV 
Sbjct:   230 QGIQKGDDFGFVTFVLFERHFTPQNREDCISHIQVFRNTLHFHIKASKAYMHQRMRKRVA 289

Query:   286 SMIRTLDRAKPDAEKLKKSTSNKSFKR 312
                + L+RAKPD E  +K+ + +SF R
Sbjct:   290 DFQKVLNRAKPDVELERKTATGRSFVR 316

GO:0000147 "actin cortical patch assembly" evidence=IC

GO:0003779 "actin binding" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0005885 "Arp2/3 protein complex" evidence=IDA

GO:0006897 "endocytosis" evidence=IC

GO:0030479 "actin cortical patch" evidence=IDA

GO:0032153 "cell division site" evidence=IDA

GO:0034314 "Arp2/3 complex-mediated actin nucleation" evidence=IDA

GO:0051286 "cell tip" evidence=IDA

ZFIN|ZDB-GENE-030131-5276 arpc2 "actin related protein 2/3 complex, subunit 2" [Danio rerio (taxid:7955)]

 Score = 390 (142.3 bits), Expect = 3.5e-36, P = 3.5e-36
 Identities = 101/314 (32%), Positives = 160/314 (50%)

Query:     1 MLLLQSHSRFLLEALLNRVQNVDKATEVDYHWVEFDDVRYHVQVTMKNPHIXXXXXXXXX 60
             M+LL+ ++R + E L  +  +     + +   V F D    V   + NP+          
Sbjct:     1 MILLEINNRIIEETLSLKFDSASNGNKPEAVEVTFADFD-GVLYHISNPN--GDKTKVMV 57

Query:    61 XXXETIFIGGLPFGAIEAIKAAYGNVVQILDPPRDGFNLTLKLNLSKLPPNEENKHALLV 120
                   F      GA E +K  YGN    L  P DG+N++L  +L  LPPN+E     ++
Sbjct:    58 SISLKFFKELQEHGADELLKRVYGN---FLVAPEDGYNISLLFDLDALPPNKEE----MI 110

Query:   121 KIASVREVVLGAPLRVVLKHLASKTVASDIDQLLALVHRPKESFFLIPQAEKVTVVFPMR 180
               A + +    A   V  K+   +    D ++   + +R  ES ++  + ++VTVVF   
Sbjct:   111 HQAGILKRNCFAS--VFEKYFKFQEEGRDGEKRAVVHYRDDESMYIEAKKDRVTVVFSTV 168

Query:   181 FNDSIDTVLATSFLQEFVEARRTAGLNNAPLCMWSS-SPPLELKGVPSETLSANAGFVTF 239
             F D  D ++   F+QEF E RR +  + AP  ++S   PPLELK   +  +  N G++TF
Sbjct:   169 FKDDDDVIIGKVFMQEFKEGRRAS--HTAPQVLFSHREPPLELKDTDA-AVGDNIGYITF 225

Query:   240 VIFPRHVEGKKLDRTVWNLSTFHAYVSYHVKCSEGFMHTRMRRRVESMIRTLDRAKPDAE 299
             V+FPRH      D T+  + TF  Y+ YH+KCS+ ++HTRMR +    ++ L+RA+PDAE
Sbjct:   226 VLFPRHTNANTRDNTINLIHTFRDYLHYHIKCSKAYIHTRMRAKTSDFLKVLNRARPDAE 285

Query:   300 KLK-KSTSNKSFKR 312
             K + K+ S K+F R
Sbjct:   286 KKEMKTISGKTFSR 299

GO:0005856 "cytoskeleton" evidence=IEA

GO:0030833 "regulation of actin filament polymerization" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

WB|WBGene00021170 arx-4 [Caenorhabditis elegans (taxid:6239)]

 Score = 379 (138.5 bits), Expect = 5.1e-35, P = 5.1e-35
 Identities = 95/316 (30%), Positives = 163/316 (51%)

Query:     1 MLLLQSHSRFLLEALLNRVQNVD---KATEVDYHWVEFDDVRYHVQVTMKNPHIXXXXXX 57
             M++L+ ++R ++E L  +  N     K   V+  + +FD V Y     + NP        
Sbjct:     1 MIILEQNNRIIVELLEQKFANAKEGGKPESVNVTFADFDGVLYK----LSNPD---GDRT 53

Query:    58 XXXXXXETIFIGGLP-FGAIEAIKAAYGNVVQILDPPRDGFNLTLKLNLSKLPPNEENKH 116
                      F   L   GA + ++  YG  ++    P  GFN+TL+ NL+ LP +  +  
Sbjct:    54 KIILSISLKFYTELQQHGADDLLRRVYGGHMR--STPEQGFNVTLEYNLADLPADTTD-- 109

Query:   117 ALLVKIASVREVVLGAPLRVVLKHLASKTVASDIDQLLALVHRPKESFFLIPQAEKVTVV 176
               LV+ AS  +    A   V  K+   +    +  +   + +R  E+ ++  +A++VTV+
Sbjct:   110 --LVQAASALKRNCFAS--VFEKYFEFQEAGQEGHKRAVINYRDDETMYIEAKADRVTVI 165

Query:   177 FPMRFNDSIDTVLATSFLQEFVEARRTAGLNNAPLCMWS-SSPPLELKGVPSETLSANAG 235
             F   F D+ D ++   FLQEF E R+ +    AP  ++S   PPLELK +P   +  N G
Sbjct:   166 FSTVFKDADDVIIGKVFLQEFREGRKAS--QTAPAVLYSLGEPPLELKDLPEARVGDNVG 223

Query:   236 FVTFVIFPRHVEGKKLDRTVWNLSTFHAYVSYHVKCSEGFMHTRMRRRVESMIRTLDRAK 295
             ++TFV+FPRH   K  D T+  + +F  Y+ YH+KCS+ ++HTRMR +    ++ L+RA+
Sbjct:   224 YITFVLFPRHTNKKTKDNTIDLIHSFRDYLHYHIKCSKVYLHTRMRAKTTDFLKVLNRAR 283

Query:   296 PDAEKLKKSTSNKSFK 311
             P+ +  KK+   ++F+
Sbjct:   284 PEVKGEKKTFHGRTFQ 299

GO:0005856 "cytoskeleton" evidence=IEA

GO:0030833 "regulation of actin filament polymerization" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0018991 "oviposition" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

GO:0016331 "morphogenesis of embryonic epithelium" evidence=IMP

GO:0010631 "epithelial cell migration" evidence=IMP

ASPGD|ASPL0000057561 AN0306 [Emericella nidulans (taxid:162425)]

 Score = 364 (133.2 bits), Expect = 2.0e-33, P = 2.0e-33
 Identities = 88/327 (26%), Positives = 167/327 (51%)

Query:     2 LLLQSHSRFLLEALLNRVQNVDKATEVDYHWVEFDDVRYHVQVTMKNPHIXXXXXXXXXX 61
             +LL  +   L+ +LL    +      +D    +FD V +H    +  P +          
Sbjct:     1 MLLLDYENVLIRSLLTERFSGAPPVSIDQIVSDFDGVTFH----LSTPEVKTKILISLNV 56

Query:    62 XXETIFIGGLPFGAIEAIKAAYGNVVQILDPPRDGFNLTLKLNLSKLPPNEENKHALLVK 121
                  F   + +GA + ++  YG  +   +P   G++ ++ ++L  LP ++  +  L+ +
Sbjct:    57 K---CFRELVQYGAQQVLEREYGPYIVAPEP---GYDFSVLIDLENLPDDQTAREDLITR 110

Query:   122 IASVREVVLGAPLRVV------LKHLASKTVA-------SDIDQLLALVHRPKESFFLIP 168
             +A ++   + AP          L   ASK  +       ++  +++A+ +R +E+ ++  
Sbjct:   111 LALLKRNAMAAPFEKAFDEFAQLAEEASKYTSEAAPAGVAEGGEVMAIHYREEEAIYIKA 170

Query:   169 QAEKVTVVFPMRFNDSIDTVLATSFLQEFVEARR-TAGLNNAPLCMWSSSPPLELKGVPS 227
               ++VTV+F   F +  D +    FLQEFV+ARR  A L NAP  ++ + PPLEL GVP 
Sbjct:   171 SHDRVTVIFSTVFREETDRIFGKVFLQEFVDARRRVATLQNAPQVLFRNDPPLELAGVPG 230

Query:   228 --ETLSANAGFVTFVIFPRHVEGKKLDRTVWNLSTFHAYVSYHVKCSEGFMHTRMRRRVE 285
               +       ++TFV+FPRH+  ++    + ++ TF  Y  YH+K S+ ++HTRMR+R  
Sbjct:   231 LQDAGDGKISYITFVLFPRHLTPQRRQENISHIQTFRDYFHYHIKASKAYIHTRMRKRTA 290

Query:   286 SMIRTLDRAKPD-AEKLKKSTSNKSFK 311
               ++ L+RA+P+  E+ +K+ S ++F+
Sbjct:   291 DFLQVLNRARPENEERERKTASGRTFR 317

GO:0005634 "nucleus" evidence=IEA

GO:0005885 "Arp2/3 protein complex" evidence=IEA

GO:0030479 "actin cortical patch" evidence=IEA

GO:0051286 "cell tip" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0032153 "cell division site" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0034314 "Arp2/3 complex-mediated actin nucleation" evidence=IEA

UNIPROTKB|F1P1K3 ARPC2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 355 (130.0 bits), Expect = 1.8e-32, P = 1.8e-32
 Identities = 95/313 (30%), Positives = 158/313 (50%)

Query:     1 MLLLQSHSRFLLEALLNRVQNVDKATEVDYHWVEFDDVRYHVQVTMKNPHIXXXXXXXXX 60
             M+LL+ ++R + E L  + +      + +   V F D    V   + NP+          
Sbjct:     9 MILLEVNNRIIEETLTLKFEGAAAGNKPEAVEVTFADFD-GVLYHISNPN---GDKTKVM 64

Query:    61 XXXETIFIGGLP-FGAIEAIKAAYGNVVQILDPPRDGFNLTLKLNLSKLPPNEENKHALL 119
                   F   L   GA E +K  YGN    L  P  G+N++L  +L  LP +   K A++
Sbjct:    65 VSISLKFYKELQEHGADEVLKKVYGNY---LVNPESGYNVSLLYDLENLPAD---KDAIV 118

Query:   120 VKIASVREVVLGAPLRVVLKHLASKTVASDIDQLLALVHRPKESFFLIPQAEKVTVVFPM 179
              +   ++     +   V  K+   +    + ++   + +R  E+ ++  + ++VTVVF  
Sbjct:   119 HQAGMLKRNCFAS---VFEKYFKFQEEGKEGEKRAVIHYRDDETMYVEAKKDRVTVVFST 175

Query:   180 RFNDSIDTVLATSFLQEFVEARRTAGLNNAPLCMWSS-SPPLELKGVPSETLSANAGFVT 238
              F D  D V+   F+QEF E RR +  + AP  ++S   PPLELK   +  +  N G++T
Sbjct:   176 VFKDDDDVVIGKVFMQEFKEGRRAS--HTAPQVLFSHREPPLELKDTDA-AIGDNIGYIT 232

Query:   239 FVIFPRHVEGKKLDRTVWNLSTFHAYVSYHVKCSEGFMHTRMRRRVESMIRTLDRAKPDA 298
             FV+FPRH      D T+  + TF  Y+ YH+KCS+ ++HTRMR +    ++ L+RA+PDA
Sbjct:   233 FVLFPRHTNAAARDNTINLIHTFRDYLHYHIKCSKAYIHTRMRAKTSDFLKVLNRARPDA 292

Query:   299 EKLK-KSTSNKSF 310
             EK + K+ + K+F
Sbjct:   293 EKKEMKTITGKTF 305

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005768 "endosome" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005925 "focal adhesion" evidence=IEA

GO:0030838 "positive regulation of actin filament polymerization" evidence=IEA

GO:0031252 "cell leading edge" evidence=IEA

GO:1900026 "positive regulation of substrate adhesion-dependent cell spreading" evidence=IEA

UNIPROTKB|O15144 ARPC2 "Actin-related protein 2/3 complex subunit 2" [Homo sapiens (taxid:9606)]

 Score = 352 (129.0 bits), Expect = 3.7e-32, P = 3.7e-32
 Identities = 94/313 (30%), Positives = 158/313 (50%)

Query:     1 MLLLQSHSRFLLEALLNRVQNVDKATEVDYHWVEFDDVRYHVQVTMKNPHIXXXXXXXXX 60
             M+LL+ ++R + E L  + +N     + +   V F D    V   + NP+          
Sbjct:     1 MILLEVNNRIIEETLALKFENAAAGNKPEAVEVTFADFD-GVLYHISNPN---GDKTKVM 56

Query:    61 XXXETIFIGGLP-FGAIEAIKAAYGNVVQILDPPRDGFNLTLKLNLSKLPPNEENKHALL 119
                   F   L   GA E +K  YG+    L  P  G+N++L  +L  LP +   K +++
Sbjct:    57 VSISLKFYKELQAHGADELLKRVYGS---FLVNPESGYNVSLLYDLENLPAS---KDSIV 110

Query:   120 VKIASVREVVLGAPLRVVLKHLASKTVASDIDQLLALVHRPKESFFLIPQAEKVTVVFPM 179
              +   ++     +   V  K+   +    + +    + +R  E+ ++  + ++VTVVF  
Sbjct:   111 HQAGMLKRNCFAS---VFEKYFQFQEEGKEGENRAVIHYRDDETMYVESKKDRVTVVFST 167

Query:   180 RFNDSIDTVLATSFLQEFVEARRTAGLNNAPLCMWSS-SPPLELKGVPSETLSANAGFVT 238
              F D  D V+   F+QEF E RR +  + AP  ++S   PPLELK   +  +  N G++T
Sbjct:   168 VFKDDDDVVIGKVFMQEFKEGRRAS--HTAPQVLFSHREPPLELKDTDA-AVGDNIGYIT 224

Query:   239 FVIFPRHVEGKKLDRTVWNLSTFHAYVSYHVKCSEGFMHTRMRRRVESMIRTLDRAKPDA 298
             FV+FPRH      D T+  + TF  Y+ YH+KCS+ ++HTRMR +    ++ L+RA+PDA
Sbjct:   225 FVLFPRHTNASARDNTINLIHTFRDYLHYHIKCSKAYIHTRMRAKTSDFLKVLNRARPDA 284

Query:   299 EKLK-KSTSNKSF 310
             EK + K+ + K+F
Sbjct:   285 EKKEMKTITGKTF 297

GO:0003779 "actin binding" evidence=IEA

GO:0005768 "endosome" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005925 "focal adhesion" evidence=IEA

GO:0019894 "kinesin binding" evidence=IEA

GO:0030838 "positive regulation of actin filament polymerization" evidence=IEA

GO:0031252 "cell leading edge" evidence=IEA

GO:0035650 "AP-1 adaptor complex binding" evidence=IEA

GO:0071933 "Arp2/3 complex binding" evidence=IEA

GO:1900026 "positive regulation of substrate adhesion-dependent cell spreading" evidence=IEA

GO:0042995 "cell projection" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0015629 "actin cytoskeleton" evidence=TAS

GO:0005200 "structural constituent of cytoskeleton" evidence=TAS

GO:0005885 "Arp2/3 protein complex" evidence=TAS

GO:0006928 "cellular component movement" evidence=TAS

GO:0005737 "cytoplasm" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

UNIPROTKB|Q3MHR7 ARPC2 "Actin-related protein 2/3 complex subunit 2" [Bos taurus (taxid:9913)]

 Score = 351 (128.6 bits), Expect = 4.7e-32, P = 4.7e-32
 Identities = 94/313 (30%), Positives = 158/313 (50%)

Query:     1 MLLLQSHSRFLLEALLNRVQNVDKATEVDYHWVEFDDVRYHVQVTMKNPHIXXXXXXXXX 60
             M+LL+ ++R + E L  + +N     + +   V F D    V   + NP+          
Sbjct:     1 MILLEVNNRIIEETLALKFENAAAGNKPEAVEVTFADFD-GVLYHISNPN---GDKTKVM 56

Query:    61 XXXETIFIGGLP-FGAIEAIKAAYGNVVQILDPPRDGFNLTLKLNLSKLPPNEENKHALL 119
                   F   L   GA E +K  YG+    L  P  G+N++L  +L  LP +   K +++
Sbjct:    57 VSISLKFYKELQAHGADELLKRVYGSY---LVNPESGYNVSLLYDLENLPAS---KDSIV 110

Query:   120 VKIASVREVVLGAPLRVVLKHLASKTVASDIDQLLALVHRPKESFFLIPQAEKVTVVFPM 179
              +   ++     +   V  K+   +    + +    + +R  E+ ++  + ++VTVVF  
Sbjct:   111 HQAGMLKRNCFAS---VFEKYFQFQEEGKEGENRAVIHYRDDETMYVESKKDRVTVVFST 167

Query:   180 RFNDSIDTVLATSFLQEFVEARRTAGLNNAPLCMWSS-SPPLELKGVPSETLSANAGFVT 238
              F D  D V+   F+QEF E RR +  + AP  ++S   PPLELK   +  +  N G++T
Sbjct:   168 VFKDDDDVVIGKVFMQEFKEGRRAS--HTAPQVLFSHREPPLELKDTDA-AVGDNIGYIT 224

Query:   239 FVIFPRHVEGKKLDRTVWNLSTFHAYVSYHVKCSEGFMHTRMRRRVESMIRTLDRAKPDA 298
             FV+FPRH      D T+  + TF  Y+ YH+KCS+ ++HTRMR +    ++ L+RA+PDA
Sbjct:   225 FVLFPRHTNASARDNTINLIHTFRDYLHYHIKCSKAYIHTRMRAKTSDFLKVLNRARPDA 284

Query:   299 EKLK-KSTSNKSF 310
             EK + K+ + K+F
Sbjct:   285 EKKEMKTITGKTF 297

GO:0042995 "cell projection" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

GO:0030833 "regulation of actin filament polymerization" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P85970	ARPC2_RAT	No assigned EC number	0.3132	0.8899	0.97	yes	no
O96623	ARPC2_DICDI	No assigned EC number	0.3396	0.8837	0.9863	yes	no
Q3MHR7	ARPC2_BOVIN	No assigned EC number	0.3132	0.8899	0.97	yes	no
O14241	ARPC2_SCHPO	No assigned EC number	0.3058	0.9204	0.9495	yes	no
Q9CVB6	ARPC2_MOUSE	No assigned EC number	0.3132	0.8899	0.97	yes	no
O15144	ARPC2_HUMAN	No assigned EC number	0.3132	0.8899	0.97	yes	no
Q5R5Z5	ARPC2_PONAB	No assigned EC number	0.3132	0.8899	0.97	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	327
pfam04045	240	pfam04045, P34-Arc, Arp2/3 complex, 34 kD subunit	7e-92

>gnl|CDD|217859 pfam04045, P34-Arc, Arp2/3 complex, 34 kD subunit p34-Arc

 Score =  273 bits (700), Expect = 7e-92
 Identities = 90/251 (35%), Positives = 144/251 (57%), Gaps = 14/251 (5%)

Query: 53  LLSVSLPVPPPETIFIGGLPFGAIEAIKAAYGNVVQILDPPRDGFNLTLKLNLSKLPPNE 112
           L+SVSL   P        + +GA E +K  YG  +     P  G++++L ++L +LP +E
Sbjct: 1   LVSVSLKCWPDL------VKYGAEELLKREYGTYLG--VKPEPGYDVSLLIDLEELPADE 52

Query: 113 ENKHALLVKIASVREVVLGAPLRVVLKHLASKTVASDIDQLLALVHRPKESFFLIPQAEK 172
             +  L+ KIA ++   + AP     +  A     ++ +++  + +R  E+ ++ P  ++
Sbjct: 53  --REELIEKIALLKRNCMAAPFEKAFEKQAELAEEAEGEEVAVIHYRDDETIYIKPSFDR 110

Query: 173 VTVVFPMRFNDSIDTVLATSFLQEFVEARRTAGLNNAPLCMWS-SSPPLELKGVPSETL- 230
           VTV+F   F D  D ++   FLQEFV+ARR +    AP  ++S   PPLEL+GVP     
Sbjct: 111 VTVIFSTVFKDETDKIIGKVFLQEFVDARRRS-RQTAPQVLFSHKEPPLELQGVPGAAKA 169

Query: 231 SANAGFVTFVIFPRH-VEGKKLDRTVWNLSTFHAYVSYHVKCSEGFMHTRMRRRVESMIR 289
             N G+VTFV+FPRH V  K+ D T+  + TF  Y+ YH+KCS+ +MH+RMR RV   ++
Sbjct: 170 GDNVGYVTFVLFPRHLVTPKRRDNTISLIQTFRNYLHYHIKCSKAYMHSRMRNRVAEFLK 229

Query: 290 TLDRAKPDAEK 300
            L+RAKP+ + 
Sbjct: 230 VLNRAKPEPKD 240

Arp2/3 protein complex has been implicated in the control of actin polymerisation in cells. The human complex consists of seven subunits which include the actin related Arp2 and Arp3, and five others referred to as p41-Arc, p34-Arc, p21-Arc, p20-Arc, and p16-Arc. This family represents the p34-Arc subunit. Length = 240

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	327
KOG2826	301	consensus Actin-related protein Arp2/3 complex, su	100.0
PF04045	241	P34-Arc: Arp2/3 complex, 34 kD subunit p34-Arc; In	100.0
PTZ00278	174	ARP2/3 complex subunit; Provisional	92.96
PF05856	170	ARPC4: ARP2/3 complex 20 kDa subunit (ARPC4); Inte	91.26

>KOG2826 consensus Actin-related protein Arp2/3 complex, subunit ARPC2 [Cytoskeleton]

Probab=100.00  E-value=2.6e-126  Score=874.79  Aligned_cols=295  Identities=32%  Similarity=0.610  Sum_probs=279.3

Q ss_pred             CcccccccHHHHHHHHHhhhcc---CCCcccceEEeecCceEEEEecCCCCCceEEEEEeeCCCCCccccccCCCccHHH
Q 020327            1 MLLLQSHSRFLLEALLNRVQNV---DKATEVDYHWVEFDDVRYHVQVTMKNPHIVLLSVSLPVPPPETIFIGGLPFGAIE   77 (327)
Q Consensus         1 MilLe~~N~ii~~~L~~~~~~~---~kp~~id~~~~DFD~v~yHis~~~~~k~~l~lSislk~~~~~~~~~~~l~~Ga~e   77 (327)
                      ||+||++|+||+++|.++++++   .+|+++|++++|||||+|||||+++||++|+||||+|||+  .++    .||+++
T Consensus         1 Mi~Le~nN~iI~etL~~kf~~~~~g~~P~sid~~vaDFDgv~yhiSnp~gdktkillSislK~y~--elq----~~Ga~~   74 (301)
T KOG2826|consen    1 MILLEPNNRIIEETLNEKFENARAGGKPESIDVTVADFDGVLYHISNPNGDKTKILLSISLKFYK--ELQ----LHGADD   74 (301)
T ss_pred             CceeccccHHHHHHHHHHHHHHhccCCCcceeEEEeccCceEEEccCCCCCceEEEEEEehhhHH--HHH----HcCHHH
Confidence            9999999999999999999884   4899999999999999999999999999999999999954  344    499999


Q ss_pred             HHHHhhcccccccCCCCCCcceEEEEcCCCCCCChhhHHHHHHHHHhHHHHHhhhHHHHHHHHHhccCcccccCcceEEe
Q 020327           78 AIKAAYGNVVQILDPPRDGFNLTLKLNLSKLPPNEENKHALLVKIASVREVVLGAPLRVVLKHLASKTVASDIDQLLALV  157 (327)
Q Consensus        78 ~Lk~~Yg~~~~i~~~pE~GYdvTL~iDL~~lp~~~e~~~~li~~~s~lKrn~laApF~~~f~~l~~~~~~~~~~~~~~i~  157 (327)
                      +||++||.|+   ..||+|||+||+|||++||++.++   +++.+++|||||+||+|+++|+   .|..+.++.+.++||
T Consensus        75 LLk~~yg~~~---~epE~Gyn~slli~L~~lpa~~~~---l~~~i~~lkrn~~as~F~k~f~---~Q~~~~e~~~r~~I~  145 (301)
T KOG2826|consen   75 LLKRVYGSYL---SEPEPGYNVSLLIDLAELPADKES---LAKTISLLKRNCFASVFEKYFQ---FQEAGVEGEKRAVIH  145 (301)
T ss_pred             HHHHHhcccc---CCCCCCccEEEEEEHHhCchhHHH---HHHHHHHhhhhHHHHHHHHHHh---cchhhhhhhheeEEE
Confidence            9999999997   679999999999999999999664   9999999999999999999997   455556677889999


Q ss_pred             ccCCceEEEeecCCeeEEEEeceecCCccchhhhHHHHHHHHHhhhcCCCCCCCccCCC-CCCcccCCCCCcccCCCeeE
Q 020327          158 HRPKESFFLIPQAEKVTVVFPMRFNDSIDTVLATSFLQEFVEARRTAGLNNAPLCMWSS-SPPLELKGVPSETLSANAGF  236 (327)
Q Consensus       158 YR~dE~iyi~~~~DrVTVIFst~F~D~~D~vigkvFLQEFvdaRr~~~~~~APqVl~S~-~PPlEL~~~~~~~~~~n~gy  236 (327)
                      ||+||+|||+|++|||||||||+|+|+||+||||||||||+||||+  +|+|||||||+ ||||||++++++++|+|+||
T Consensus       146 YRddEti~i~~k~DRVTvvFsTiF~de~D~I~GKVFlQEf~e~Rra--~qtAPqVLfShrePPLElkd~~~~~vgdn~gy  223 (301)
T KOG2826|consen  146 YRDDETIYIEPKNDRVTVVFSTIFRDEDDVIIGKVFLQEFVEGRRA--SQTAPQVLFSHREPPLELKDLYDARVGDNIGY  223 (301)
T ss_pred             eccCceEEEecCCCeEEEEEEEeeccCCceeehHHHHHHHHHHHhh--hccccHHHhhcCCCCchhhhcCCcccccccce
Confidence            9999999999999999999999999999999999999999999997  89999999996 99999999999999999999


Q ss_pred             EEEEeeccccCccchhhhhHHHhhhccccceeeeccchhhHHHHHHhHHHHHHHHhhhCCCccc-cccccccchhhh
Q 020327          237 VTFVIFPRHVEGKKLDRTVWNLSTFHAYVSYHVKCSEGFMHTRMRRRVESMIRTLDRAKPDAEK-LKKSTSNKSFKR  312 (327)
Q Consensus       237 VTFvLFprH~~~~~~~~ti~~l~~FR~YlhYHIKcSKaYmHsRMR~Rv~~~lkvLnRAkpe~~~-ekkT~sGr~f~~  312 (327)
                      |||||||||++++.+++||++|++|||||||||||||||||||||+||++|||||||||||++. ||||+|||+|++
T Consensus       224 iTFVLFpRH~~k~~rd~tI~~i~~FRdylHyHIKcSKaYmHsRMR~k~~dFlKVLNRArpd~~~~erkT~tGrtf~~  300 (301)
T KOG2826|consen  224 ITFVLFPRHTNKETRDNTINLIHLFRDYLHYHIKCSKAYMHSRMRAKTSDFLKVLNRARPDVEDEERKTFTGRTFVY  300 (301)
T ss_pred             EEEEEecccCCchhccchhHHHHHHHHHhhhhhhhhHHHHHHHHHHhHHHHHHHHhhcCCCccchhhccccCceEec
Confidence            9999999999999999999999999999999999999999999999999999999999999754 999999999986

>PF04045 P34-Arc: Arp2/3 complex, 34 kD subunit p34-Arc; InterPro: IPR007188 Arp2/3 protein complex has been implicated in the control of actin polymerisation in cells

Probab=100.00  E-value=2.6e-105  Score=744.25  Aligned_cols=238  Identities=42%  Similarity=0.795  Sum_probs=202.0

Q ss_pred             EEEEeeCCCCCccccccCCCccHHHHHHHhhcccccccCCCCCCcceEEEEcCCCCCCChhhHHHHHHHHHhHHHHHhhh
Q 020327           53 LLSVSLPVPPPETIFIGGLPFGAIEAIKAAYGNVVQILDPPRDGFNLTLKLNLSKLPPNEENKHALLVKIASVREVVLGA  132 (327)
Q Consensus        53 ~lSislk~~~~~~~~~~~l~~Ga~e~Lk~~Yg~~~~i~~~pE~GYdvTL~iDL~~lp~~~e~~~~li~~~s~lKrn~laA  132 (327)
                      +|||++||  |.++.    +||+.|+|+++||++++  ++||+|||+||.|||++||++++++.++|+++|+||||||||
T Consensus         1 lvSi~~~~--~~~l~----~~G~~e~l~~~Yg~~~~--~~pe~Gy~~tL~idl~~lp~~~~~~~~~i~~is~LKr~~~aa   72 (241)
T PF04045_consen    1 LVSISLKC--WKELQ----QYGAEEYLKREYGSYVQ--TPPESGYDVTLVIDLEKLPADEEDREELIKKISLLKRNCLAA   72 (241)
T ss_dssp             EEEEE-TT--HHHHH----TTTHHHHHHHHCCCCE---ES--TTSSEEEEEETTS-----SSHHHHHHHHHTHHHHHCCH
T ss_pred             CeEEEech--HHHHH----HcCHHHHHHHhcccccc--CCCCCCccEEEEEEcccCCchhhhHHHHHHHHHHHHHHHHHH
Confidence            68999999  77777    59999999999999985  689999999999999999998888999999999999999999


Q ss_pred             HHHHHHHHHhccCcccccCcceEEeccCCceEEEeecCCeeEEEEeceecCCccchhhhHHHHHHHHHhhhcCCCCCCCc
Q 020327          133 PLRVVLKHLASKTVASDIDQLLALVHRPKESFFLIPQAEKVTVVFPMRFNDSIDTVLATSFLQEFVEARRTAGLNNAPLC  212 (327)
Q Consensus       133 pF~~~f~~l~~~~~~~~~~~~~~i~YR~dE~iyi~~~~DrVTVIFst~F~D~~D~vigkvFLQEFvdaRr~~~~~~APqV  212 (327)
                      ||+++|+.+++++..+.++++++|+||+||+|||+|++|||||||||+|+|+||+||||||||||+||||+++ |+||||
T Consensus        73 pF~~~f~~~~~~~~~~~~~~~~~i~YR~~E~iyi~~~~DrVTVIFst~F~D~~D~vigkvFLQEFvdaRr~~~-~~APqv  151 (241)
T PF04045_consen   73 PFEKAFDEQASLSEEPPGEKPAVIHYRDDETIYIKPSKDRVTVIFSTRFKDEDDRVIGKVFLQEFVDARRRSR-QTAPQV  151 (241)
T ss_dssp             HHHHHHCHHHCT-----TTT-EEEEECTTEEEEEEEESSEEEEEEEEE-SSCCHHHHHHHHHHHHHTGGGT---TTS-EE
T ss_pred             HHHHHHHHHHhCCccccCCceEEEEeCCCceEEEEeCCCEEEEEEEEEEcCCCCeEeeHHHHHHHHHhccccC-CCCCce
Confidence            9999999888876555567899999999999999999999999999999999999999999999999999975 999999


Q ss_pred             cCCC-CCCcccCCCCCcc-cCCCeeEEEEEeecccc-CccchhhhhHHHhhhccccceeeeccchhhHHHHHHhHHHHHH
Q 020327          213 MWSS-SPPLELKGVPSET-LSANAGFVTFVIFPRHV-EGKKLDRTVWNLSTFHAYVSYHVKCSEGFMHTRMRRRVESMIR  289 (327)
Q Consensus       213 l~S~-~PPlEL~~~~~~~-~~~n~gyVTFvLFprH~-~~~~~~~ti~~l~~FR~YlhYHIKcSKaYmHsRMR~Rv~~~lk  289 (327)
                      +||+ +||+||+|+++++ .++|+|||||||||||+ +++++++|||+|++|||||||||||||||||||||+||++|||
T Consensus       152 lfS~~~PPlEl~~~~~~~~~~~n~gyvTFvLfprH~~~~~~~~~ti~~l~~FR~YlhYHIKcsKaymHsRMR~Rv~~~lk  231 (241)
T PF04045_consen  152 LFSHREPPLELRGVPGARNLGDNVGYVTFVLFPRHFVTPERRDNTIWHLQTFRNYLHYHIKCSKAYMHSRMRKRVESFLK  231 (241)
T ss_dssp             EEECSS--CGGTT-TT----STTEEEEEEEEEHHHGHSTTTHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eccCCCCChhHcCCCCccccCCCeEEEEEEEeccccCcchhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence            9997 9999999998887 89999999999999995 5889999999999999999999999999999999999999999


Q ss_pred             HHhhhCCCcc
Q 020327          290 TLDRAKPDAE  299 (327)
Q Consensus       290 vLnRAkpe~~  299 (327)
                      ||||||||.+
T Consensus       232 vLnrAkpe~~  241 (241)
T PF04045_consen  232 VLNRAKPEEE  241 (241)
T ss_dssp             HHHCTS----
T ss_pred             HHHhcCcCCC
Confidence            9999999953

The human complex consists of seven subunits, which include the actin related Arp2 and Arp3, and five others referred to as p41-Arc, p34-Arc, p21-Arc, p20-Arc, and p16-Arc []. This family represents the p34-Arc subunit.; GO: 0030833 regulation of actin filament polymerization, 0005856 cytoskeleton; PDB: 2P9L_D 2P9I_D 2P9U_D 3DXM_D 2P9N_D 1TYQ_D 3DXK_D 1K8K_D 2P9S_D 1U2V_D ....

>PTZ00278 ARP2/3 complex subunit; Provisional

Probab=92.96  E-value=0.19  Score=45.52  Aligned_cols=120  Identities=20%  Similarity=0.351  Sum_probs=98.5

Q ss_pred             cceEEeccCCceEEEeecCCeeEEEEeceecCCccchhhhHHHHHHHHHhhhcCCCCCCCccCCCCCCcccCCCCCcccC
Q 020327          152 QLLALVHRPKESFFLIPQAEKVTVVFPMRFNDSIDTVLATSFLQEFVEARRTAGLNNAPLCMWSSSPPLELKGVPSETLS  231 (327)
Q Consensus       152 ~~~~i~YR~dE~iyi~~~~DrVTVIFst~F~D~~D~vigkvFLQEFvdaRr~~~~~~APqVl~S~~PPlEL~~~~~~~~~  231 (327)
                      .++.|..-++|.+.|.|+-+.|.|.|...-.|+-++++++-|+. |.-.|-.     +=+|         ||-.|-    
T Consensus        53 ~pl~I~Rne~E~clIE~SiNSvRiSi~ikqaDeie~iL~~kf~~-Fl~~RAe-----~F~I---------LRrkPv----  113 (174)
T PTZ00278         53 NPIYIVRSEKEKCLIEPSINSVRISFSFKKSDELDVIIARKFVS-FLAQRAE-----QFVI---------LRRKPI----  113 (174)
T ss_pred             CcEEEEEcCCceEEEEcccceEEEEEEehhhChHHHHHHHHHHH-HHHhhhh-----ceeE---------EeecCc----
Confidence            56888888999999999999999999999999999999999987 5554432     1122         222221    


Q ss_pred             CCeeE-EEEEeeccccCccchhhhhHHHhhhccccceeeeccchhhHHHHHHhHHHHHHHHh
Q 020327          232 ANAGF-VTFVIFPRHVEGKKLDRTVWNLSTFHAYVSYHVKCSEGFMHTRMRRRVESMIRTLD  292 (327)
Q Consensus       232 ~n~gy-VTFvLFprH~~~~~~~~ti~~l~~FR~YlhYHIKcSKaYmHsRMR~Rv~~~lkvLn  292 (327)
                        .|| |||.+.--|++.--+.+-|+.|.+|=.=.---|.--|-.+-+|=|.=.++|++-++
T Consensus       114 --~GYDISFLItn~H~e~m~k~kLidFIi~FmeeiDkeIsemKL~~NaRaR~~A~~fl~~f~  173 (174)
T PTZ00278        114 --PGYDISFLITNFHTENMFKHKLIDFIIDFMEDIDKDISDMKLNVNTRARIAAPEFFKALA  173 (174)
T ss_pred             --CCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhc
Confidence              244 88999999998766789999999999999999999999999999999999998764

>PF05856 ARPC4: ARP2/3 complex 20 kDa subunit (ARPC4); InterPro: IPR008384 This family consists of several eukaryotic ARP2/3 complex 20 kDa subunit (P20-ARC) proteins

Probab=91.26  E-value=0.77  Score=41.70  Aligned_cols=118  Identities=20%  Similarity=0.329  Sum_probs=85.0

Q ss_pred             CcceEEeccCCceEEEeecCCeeEEEEeceecCCccchhhhHHHHHHHHHhhhcCCCCCCCccCCCCCCcccCCCCCccc
Q 020327          151 DQLLALVHRPKESFFLIPQAEKVTVVFPMRFNDSIDTVLATSFLQEFVEARRTAGLNNAPLCMWSSSPPLELKGVPSETL  230 (327)
Q Consensus       151 ~~~~~i~YR~dE~iyi~~~~DrVTVIFst~F~D~~D~vigkvFLQEFvdaRr~~~~~~APqVl~S~~PPlEL~~~~~~~~  230 (327)
                      -.++.|...+.|.++|.|+-+.|.|.+.....|+-++++.+-|+. |.-.|-.     +=+||         |-.|-.  
T Consensus        50 l~pl~I~Rne~E~clIE~SiNSvRvSi~ikq~Deie~iL~~kf~r-Fl~~RAe-----~F~IL---------RRkPv~--  112 (170)
T PF05856_consen   50 LNPLVISRNEKEKCLIEPSINSVRVSIKIKQADEIERILCHKFTR-FLMQRAE-----NFFIL---------RRKPVE--  112 (170)
T ss_dssp             ---EEEESSSS-EEEEEEBSSEEEEEEE----SCHHHHHHHHHHH-HHHHCTT-----TSTTB----------SS--T--
T ss_pred             cCceeeccCCCceEEEEcccceEEEEEEecccChHHHHHHHHHHH-HHHhhhh-----hheee---------eecCcC--
Confidence            357888888999999999999999999999999999999999976 5555432     11222         222211  


Q ss_pred             CCCeeE-EEEEeeccccCccchhhhhHHHhhhccccceeeeccchhhHHHHHHhHHHHHH
Q 020327          231 SANAGF-VTFVIFPRHVEGKKLDRTVWNLSTFHAYVSYHVKCSEGFMHTRMRRRVESMIR  289 (327)
Q Consensus       231 ~~n~gy-VTFvLFprH~~~~~~~~ti~~l~~FR~YlhYHIKcSKaYmHsRMR~Rv~~~lk  289 (327)
                          || |||.+.-.|++.--+.+-|+.|.+|=.=+---|.--|-.+-+|=|.=.++|++
T Consensus       113 ----GYDISFLIt~~h~e~m~k~kLidFIi~FmeeiDkeIs~mKl~~naRaR~~A~~fl~  168 (170)
T PF05856_consen  113 ----GYDISFLITNFHTEQMGKHKLIDFIITFMEEIDKEISEMKLSLNARARIVAEEFLK  168 (170)
T ss_dssp             ----TSSEEEEEECCHHHHSTHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHC
T ss_pred             ----CCceeeeeechhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence                44 89999999998766789999999998777777777788888888877777764

The Arp2/3 protein complex has been implicated in the control of actin polymerisation in cells. The human complex consists of seven subunits which include the actin related proteins Arp2 and Arp3 it has been suggested that the complex promotes actin assembly in lamellipodia and may participate in lamellipodial protrusion [].; GO: 0030041 actin filament polymerization, 0005856 cytoskeleton; PDB: 3DWL_K 1K8K_F 1U2V_F 2P9S_F 2P9U_F 2P9N_F 3DXK_F 1TYQ_F 3RSE_F 2P9I_F ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	327
3dwl_D	317	Crystal Structure Of Fission Yeast Arp2/3 Complex L		9e-39
1k8k_D	300	Crystal Structure Of Arp23 COMPLEX Length = 300		2e-35

>pdb|3DWL|D Chain D, Crystal Structure Of Fission Yeast Arp2/3 Complex Lacking The Arp2 Subunit Length = 317

Iteration: 1
 Score =  157 bits (396), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 96/327 (29%), Positives = 164/327 (50%), Gaps = 26/327 (7%)
Query: 1   MLLLQSHSRFLLEALLNRVQNVDKATEVDYHWVEFDDVRYHVQVTMKNPHIXXXXXXXXX 60
           ML L  ++ F+ E L  R  + +  + +D    +FD V +H+    +   I         
Sbjct: 1   MLSLDYNNIFIYELLTERFSS-ENPSSIDQVVTDFDGVTFHISTPEEKTKILISLSMK-- 57
Query: 61  XXXETIFIGGLPFGAIEAIKAAYGNVVQILDPPRDGFNLTLKLNLSKLPPNEENKHALLV 120
                 +   + +G ++ +K  YG  V     P  G+N ++ ++L +LP  +E K  L +
Sbjct: 58  -----CYPELVNYGTLDLLKQIYGAYVH---EPEMGYNFSILIDLQQLPATDEEKEQLAM 109
Query: 121 KIASVREVVLGAPL------RVVLKHLASKT--------VASDIDQLLALVHRPKESFFL 166
            I+ ++  VL AP       +  L  LA K           +   +L+A+ +R +E+  L
Sbjct: 110 SISMLKRNVLAAPFHRAFTKQAELADLARKDPENAPMLDKQATSQELMAIHYRDEETIVL 169
Query: 167 IPQAEKVTVVFPMRFNDSIDTVLATSFLQEFVEARRTAGLNNAPLCMWS-SSPPLELKGV 225
            P+ ++VTVVF  +F +  D +    FLQEFV+ARR   +  AP  ++S   PPLE++ +
Sbjct: 170 WPEHDRVTVVFSTKFREETDRIFGKVFLQEFVDARRRPAIQTAPQVLFSYRDPPLEIRDI 229
Query: 226 PSETLSANAGFVTFVIFPRHVEGKKLDRTVWNLSTFHAYVSYHVKCSEGFMHTRMRRRVE 285
                  + GFVTFV+F RH   +  +  + ++  F   + +H+K S+ +MH RMR+RV 
Sbjct: 230 QGIQKGDDFGFVTFVLFERHFTPQNREDCISHIQVFRNTLHFHIKASKAYMHQRMRKRVA 289
Query: 286 SMIRTLDRAKPDAEKLKKSTSNKSFKR 312
              + L+RAKPD E  +K+ + +SF R
Sbjct: 290 DFQKVLNRAKPDVELERKTATGRSFVR 316

>pdb|1K8K|D Chain D, Crystal Structure Of Arp23 COMPLEX Length = 300

Iteration: 1
 Score =  145 bits (367), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 97/316 (30%), Positives = 163/316 (51%), Gaps = 25/316 (7%)
Query: 1   MLLLQSHSRFLLEALLNRVQNV---DKATEVDYHWVEFDDVRYHVQVTMKNPHIXXXXXX 57
           M+LL+ ++R + E L  + +N    +K   V+  + +FD V YH+     NP+       
Sbjct: 1   MILLEVNNRIIEETLALKFENAAAGNKPEAVEVTFADFDGVLYHIS----NPNGDKTKVM 56
Query: 58  XXXXXXETIFIGGL-PFGAIEAIKAAYGNVVQILDPPRDGFNLTLKLNLSKLPPNEENKH 116
                    F   L   GA E +K  YG+    L  P  G+N++L  +L  LP +   K 
Sbjct: 57  VSISLK---FYKELQAHGADELLKRVYGSY---LVNPESGYNVSLLYDLENLPAS---KD 107
Query: 117 ALLVKIASVREVVLGAPLRVVLKHLASKTVASDIDQLLALVHRPKESFFLIPQAEKVTVV 176
           +++ +   ++     +   V  K+   +    + +    + +R  E+ ++  + ++VTVV
Sbjct: 108 SIVHQAGMLKRNCFAS---VFEKYFQFQEEGKEGENRAVIHYRDDETMYVESKKDRVTVV 164
Query: 177 FPMRFNDSIDTVLATSFLQEFVEARRTAGLNNAPLCMWS-SSPPLELKGVPSETLSANAG 235
           F   F D  D V+   F+QEF E RR +  + AP  ++S   PPLELK   +  +  N G
Sbjct: 165 FSTVFKDDDDVVIGKVFMQEFKEGRRAS--HTAPQVLFSHREPPLELKDTDA-AVGDNIG 221
Query: 236 FVTFVIFPRHVEGKKLDRTVWNLSTFHAYVSYHVKCSEGFMHTRMRRRVESMIRTLDRAK 295
           ++TFV+FPRH      D T+  + TF  Y+ YH+KCS+ ++HTRMR +    ++ L+RA+
Sbjct: 222 YITFVLFPRHTNASARDNTINLIHTFRDYLHYHIKCSKAYIHTRMRAKTSDFLKVLNRAR 281
Query: 296 PDAEKLK-KSTSNKSF 310
           PDAEK + K+ + K+F
Sbjct: 282 PDAEKKEMKTITGKTF 297

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	327
3dwl_D	317	Actin-related protein 2/3 complex subunit 2; prope	1e-108
1k8k_D	300	P34, ARP2/3 complex 34 kDa subunit, P34-ARC; beta-	1e-103
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-08

>3dwl_D Actin-related protein 2/3 complex subunit 2; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Length = 317

 Score =  318 bits (815), Expect = e-108
 Identities = 98/327 (29%), Positives = 168/327 (51%), Gaps = 26/327 (7%)

Query: 1   MLLLQSHSRFLLEALLNRVQNVDKATEVDYHWVEFDDVRYHVQVTMKNPHIVLLSVSLPV 60
           ML L  ++ F+ E L  R  + +  + +D    +FD V +H+  T +    +L+S+S+  
Sbjct: 1   MLSLDYNNIFIYELLTERFSS-ENPSSIDQVVTDFDGVTFHIS-TPEEKTKILISLSMKC 58

Query: 61  PPPETIFIGGLPFGAIEAIKAAYGNVVQILDPPRDGFNLTLKLNLSKLPPNEENKHALLV 120
            P        + +G ++ +K  YG  V     P  G+N ++ ++L +LP  +E K  L +
Sbjct: 59  YPEL------VNYGTLDLLKQIYGAYVH---EPEMGYNFSILIDLQQLPATDEEKEQLAM 109

Query: 121 KIASVREVVLGAPLRVVLKHLASKTVASDID--------------QLLALVHRPKESFFL 166
            I+ ++  VL AP        A     +  D              +L+A+ +R +E+  L
Sbjct: 110 SISMLKRNVLAAPFHRAFTKQAELADLARKDPENAPMLDKQATSQELMAIHYRDEETIVL 169

Query: 167 IPQAEKVTVVFPMRFNDSIDTVLATSFLQEFVEARRTAGLNNAPLCMWSS-SPPLELKGV 225
            P+ ++VTVVF  +F +  D +    FLQEFV+ARR   +  AP  ++S   PPLE++ +
Sbjct: 170 WPEHDRVTVVFSTKFREETDRIFGKVFLQEFVDARRRPAIQTAPQVLFSYRDPPLEIRDI 229

Query: 226 PSETLSANAGFVTFVIFPRHVEGKKLDRTVWNLSTFHAYVSYHVKCSEGFMHTRMRRRVE 285
                  + GFVTFV+F RH   +  +  + ++  F   + +H+K S+ +MH RMR+RV 
Sbjct: 230 QGIQKGDDFGFVTFVLFERHFTPQNREDCISHIQVFRNTLHFHIKASKAYMHQRMRKRVA 289

Query: 286 SMIRTLDRAKPDAEKLKKSTSNKSFKR 312
              + L+RAKPD E  +K+ + +SF R
Sbjct: 290 DFQKVLNRAKPDVELERKTATGRSFVR 316

>1k8k_D P34, ARP2/3 complex 34 kDa subunit, P34-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: d.198.2.1 d.198.2.1 PDB: 1tyq_D* 1u2v_D* 2p9i_D* 2p9k_D* 2p9l_D 2p9n_D* 2p9p_D* 2p9s_D* 2p9u_D* 3dxk_D* 3dxm_D* 3rse_D Length = 300

 Score =  303 bits (777), Expect = e-103
 Identities = 95/317 (29%), Positives = 164/317 (51%), Gaps = 23/317 (7%)

Query: 1   MLLLQSHSRFLLEALLNRVQNV---DKATEVDYHWVEFDDVRYHVQVTMKNPHIVLLSVS 57
           M+LL+ ++R + E L  + +N    +K   V+  + +FD V YH+     +   V++S+S
Sbjct: 1   MILLEVNNRIIEETLALKFENAAAGNKPEAVEVTFADFDGVLYHISNPNGDKTKVMVSIS 60

Query: 58  LPVPPPETIFIGGLPFGAIEAIKAAYGNVVQILDPPRDGFNLTLKLNLSKLPPNEENKHA 117
           L        +      GA E +K  YG     L  P  G+N++L  +L  LP +++   +
Sbjct: 61  LK------FYKELQAHGADELLKRVYG---SYLVNPESGYNVSLLYDLENLPASKD---S 108

Query: 118 LLVKIASVREVVLGAPLRVVLKHLASKTVASDIDQLLALVHRPKESFFLIPQAEKVTVVF 177
           ++ +   ++     +      K+   +    + +    + +R  E+ ++  + ++VTVVF
Sbjct: 109 IVHQAGMLKRNCFASVFE---KYFQFQEEGKEGENRAVIHYRDDETMYVESKKDRVTVVF 165

Query: 178 PMRFNDSIDTVLATSFLQEFVEARRTAGLNNAPLCMWSSS-PPLELKGVPSETLSANAGF 236
              F D  D V+   F+QEF E RR +  + AP  ++S   PPLELK      +  N G+
Sbjct: 166 STVFKDDDDVVIGKVFMQEFKEGRRAS--HTAPQVLFSHREPPLELKDTD-AAVGDNIGY 222

Query: 237 VTFVIFPRHVEGKKLDRTVWNLSTFHAYVSYHVKCSEGFMHTRMRRRVESMIRTLDRAKP 296
           +TFV+FPRH      D T+  + TF  Y+ YH+KCS+ ++HTRMR +    ++ L+RA+P
Sbjct: 223 ITFVLFPRHTNASARDNTINLIHTFRDYLHYHIKCSKAYIHTRMRAKTSDFLKVLNRARP 282

Query: 297 DAEKLKKST-SNKSFKR 312
           DAEK +  T + K+F  
Sbjct: 283 DAEKKEMKTITGKTFSS 299

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 55.6 bits (133), Expect = 1e-08
 Identities = 50/338 (14%), Positives = 106/338 (31%), Gaps = 62/338 (18%)

Query: 1   MLLLQSHSRFLLEALLNRVQNVDKATEVDYHWVEFDDVRYHVQVTMKNPHIV-LLSVSLP 59
           +L  + +   LL  +L  VQN          W  F+ +   + +T +   +   LS +  
Sbjct: 237 LLKSKPYENCLL--VLLNVQNAK-------AWNAFN-LSCKILLTTRFKQVTDFLSAATT 286

Query: 60  VPPPETIFIGGLPFGAIEAIKAAYGNVVQILDPPRDGFNLTLKLNLSKLPPNEENKHALL 119
                      L    ++++   Y                 L      LP      +   
Sbjct: 287 THISLDHHSMTLTPDEVKSLLLKY-----------------LDCRPQDLPREVLTTNPRR 329

Query: 120 VKIASVREVVLGAPLRVVL------KHLA----SKTVASDIDQLLALVHRPK-ESFFLIP 168
           + I       +   +R  L      KH+     +  + S ++ L    +R   +   + P
Sbjct: 330 LSI-------IAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFP 382

Query: 169 QAEKVTV-VFPMRFNDSIDTVLATSFLQEFVEARRTAGLNNAPLCMWSSSPP---LELKG 224
            +  +   +  + + D I + +        V       L        + S P   LELK 
Sbjct: 383 PSAHIPTILLSLIWFDVIKSDV-----MVVVNKLHKYSLVEKQPKESTISIPSIYLELKV 437

Query: 225 VPSETLSANAGFVTFVIFPRHVEGKKLDRTVWNLSTFHAYVSYHVKCSEGFMHTRMRRRV 284
                 + +   V     P+  +   L     +   F++++ +H+K  E      + R V
Sbjct: 438 KLENEYALHRSIVDHYNIPKTFDSDDLIPPYLD-QYFYSHIGHHLKNIEHPERMTLFRMV 496

Query: 285 ESMIRTLDRAKPDAEKLKKSTSNKSFKRLSLKDLKDHR 322
               R L++      K++  ++  +     L  L+  +
Sbjct: 497 FLDFRFLEQ------KIRHDSTAWNASGSILNTLQQLK 528

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	327
3dwl_D	317	Actin-related protein 2/3 complex subunit 2; prope	100.0
1k8k_D	300	P34, ARP2/3 complex 34 kDa subunit, P34-ARC; beta-	100.0
3dwl_F	168	Actin-related protein 2/3 complex subunit 4; prope	93.61
1k8k_F	168	P20, ARP2/3 complex 20 kDa subunit, P20-ARC; beta-	92.49

>3dwl_D Actin-related protein 2/3 complex subunit 2; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=2.9e-130  Score=936.25  Aligned_cols=302  Identities=32%  Similarity=0.616  Sum_probs=250.0

Q ss_pred             CcccccccHHHHHHHHHhhhccCCCcccceEEeecCceEEEEecCCCCCceEEEEEeeCCCCCccccccCCCccHHHHHH
Q 020327            1 MLLLQSHSRFLLEALLNRVQNVDKATEVDYHWVEFDDVRYHVQVTMKNPHIVLLSVSLPVPPPETIFIGGLPFGAIEAIK   80 (327)
Q Consensus         1 MilLe~~N~ii~~~L~~~~~~~~kp~~id~~~~DFD~v~yHis~~~~~k~~l~lSislk~~~~~~~~~~~l~~Ga~e~Lk   80 (327)
                      |||||++|+||+++|++|+. +++|.+||++++|||||+||||++ ++|++|+|||++||  |.++.    +||+.|+||
T Consensus         1 MilLe~~N~ii~~~L~~~~~-~~~p~~~d~~~~DFDgv~yHis~p-~~k~~l~lSi~~~~--~~~l~----~~Ga~e~Lk   72 (317)
T 3dwl_D            1 MLSLDYNNIFIYELLTERFS-SENPSSIDQVVTDFDGVTFHISTP-EEKTKILISLSMKC--YPELV----NYGTLDLLK   72 (317)
T ss_dssp             CCSCCSSCHHHHHHHHHHTT-SCC-----CEEEETTTEEEECCCC----CCCCEEEECSS--HHHHH----TTTHHHHHH
T ss_pred             CcccccccHHHHHHHHHHhc-cCCCCccceeEEcCCCcEEEEeCC-CCCceEEEEEeccc--hHHHH----hcCHHHHHH
Confidence            99999999999999999996 478999999999999999999996 89999999999999  66666    599999999


Q ss_pred             HhhcccccccCCCCCCcceEEEEcCCCCCCChhhHHHHHHHHHhHHHHHhhhHHHHHHHHHh---cc-----Ccc-----
Q 020327           81 AAYGNVVQILDPPRDGFNLTLKLNLSKLPPNEENKHALLVKIASVREVVLGAPLRVVLKHLA---SK-----TVA-----  147 (327)
Q Consensus        81 ~~Yg~~~~i~~~pE~GYdvTL~iDL~~lp~~~e~~~~li~~~s~lKrn~laApF~~~f~~l~---~~-----~~~-----  147 (327)
                      ++||+|+   .+||+||||||++||++||+++++|+++|+++|+||||||||||+++|+..+   +.     ..+     
T Consensus        73 ~~Yg~~~---~~pe~GY~~sL~idL~~lp~~~e~~~~li~~is~LKrn~~aapFe~~f~~~~~L~~~~~~~~~~~~~~~~  149 (317)
T 3dwl_D           73 QIYGAYV---HEPEMGYNFSILIDLQQLPATDEEKEQLAMSISMLKRNVLAAPFHRAFTKQAELADLARKDPENAPMLDK  149 (317)
T ss_dssp             HHSTTTE---ECCCTTSSEEECCCTTSCCC-CCSHHHHHHHHHTHHHHHTSHHHHHHHTHHHHCC----------CCCCH
T ss_pred             HHhcccc---CCCCCCceEEEEEEhhhCCcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhccccccccccccc
Confidence            9999997   5799999999999999999999999999999999999999999999997543   21     011     


Q ss_pred             -cccCcceEEeccCCceEEEeecCCeeEEEEeceecCCccchhhhHHHHHHHHHhhhcCCCCCCCccCC-CCCCcccCCC
Q 020327          148 -SDIDQLLALVHRPKESFFLIPQAEKVTVVFPMRFNDSIDTVLATSFLQEFVEARRTAGLNNAPLCMWS-SSPPLELKGV  225 (327)
Q Consensus       148 -~~~~~~~~i~YR~dE~iyi~~~~DrVTVIFst~F~D~~D~vigkvFLQEFvdaRr~~~~~~APqVl~S-~~PPlEL~~~  225 (327)
                       .+++++++|+||+||+|||+|++|||||||||+|+|+||+||||||||||+||||++++|+||||+|| ++||+||+|+
T Consensus       150 ~~~~~~~~~I~YR~~E~iyI~p~~DrVTVIFst~FkDe~D~v~gkvFLQEFvdaRr~~~~~~APqvlfs~~ePPlEL~~~  229 (317)
T 3dwl_D          150 QATSQELMAIHYRDEETIVLWPEHDRVTVVFSTKFREETDRIFGKVFLQEFVDARRRPAIQTAPQVLFSYRDPPLEIRDI  229 (317)
T ss_dssp             HHHTTTCEEECCSSSCCEEEEECSSEEEEEEEECCSSSSHHHHHHHHHHHHHCCCC-----CCCEEEECSSSCCSCCCSC
T ss_pred             cccCCCeeEEecCCCceEEEEecCCeEEEEEEEEecCCCceeehHHHHHHHHHHhhccccCCCCcccccCCCCChHHhCC
Confidence             12568999999999999999999999999999999999999999999999999999779999999999 7999999999


Q ss_pred             CCcccCCCeeEEEEEeeccccCccchhhhhHHHhhhccccceeeeccchhhHHHHHHhHHHHHHHHhhhCCCcccccccc
Q 020327          226 PSETLSANAGFVTFVIFPRHVEGKKLDRTVWNLSTFHAYVSYHVKCSEGFMHTRMRRRVESMIRTLDRAKPDAEKLKKST  305 (327)
Q Consensus       226 ~~~~~~~n~gyVTFvLFprH~~~~~~~~ti~~l~~FR~YlhYHIKcSKaYmHsRMR~Rv~~~lkvLnRAkpe~~~ekkT~  305 (327)
                      ++++.++|+|||||||||||++++.+++|||+|++|||||||||||||||||||||+||++|||||||||||.++||||+
T Consensus       230 ~~~~~~~n~gyVTFvLFpRH~~~~~~~~ti~~i~~FR~YlhYHIKcSKaymHsRMR~rv~~~l~vLnrAkpe~~~ekKT~  309 (317)
T 3dwl_D          230 QGIQKGDDFGFVTFVLFERHFTPQNREDCISHIQVFRNTLHFHIKASKAYMHQRMRKRVADFQKVLNRAKPDVELERKTA  309 (317)
T ss_dssp             C-------CEEEEEEEEGGGGCTTTHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCCC------
T ss_pred             CccccCCCeeEEEEEechHhcCChhHHHHHHHHHHHHHHhhhhheecHHHHHHHHHHHHHHHHHHHHhcCCCcccccccc
Confidence            99988999999999999999999888999999999999999999999999999999999999999999999988899999


Q ss_pred             ccchhhhc
Q 020327          306 SNKSFKRL  313 (327)
Q Consensus       306 sGr~f~~~  313 (327)
                      |||||+|.
T Consensus       310 sGrtf~r~  317 (317)
T 3dwl_D          310 TGRSFVRA  317 (317)
T ss_dssp             --------
T ss_pred             CCceeecC
Confidence            99999873

>1k8k_D P34, ARP2/3 complex 34 kDa subunit, P34-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: d.198.2.1 d.198.2.1 PDB: 1tyq_D* 1u2v_D* 2p9i_D* 2p9k_D* 2p9l_D 2p9n_D* 2p9p_D* 2p9s_D* 2p9u_D* 3dxk_D* 3dxm_D* 3rse_D

Probab=100.00  E-value=1.9e-127  Score=913.57  Aligned_cols=294  Identities=31%  Similarity=0.603  Sum_probs=262.6

Q ss_pred             CcccccccHHHHHHHHHhhhc---cCCCcccceEEeecCceEEEEecCCCCCceEEEEEeeCCCCCccccccCCCccHHH
Q 020327            1 MLLLQSHSRFLLEALLNRVQN---VDKATEVDYHWVEFDDVRYHVQVTMKNPHIVLLSVSLPVPPPETIFIGGLPFGAIE   77 (327)
Q Consensus         1 MilLe~~N~ii~~~L~~~~~~---~~kp~~id~~~~DFD~v~yHis~~~~~k~~l~lSislk~~~~~~~~~~~l~~Ga~e   77 (327)
                      |||||++|+||+++|++|+.+   +++|.++|++++|||||+||||+++++|++|+|||++||  |.++.    +|||.|
T Consensus         1 MilLe~~n~ii~~~L~~r~~~~~~~~~p~~~d~~~~DFDgv~yHis~~~~dk~~i~vSisl~~--~~~L~----~~Ga~e   74 (300)
T 1k8k_D            1 MILLEVNNRIIEETLALKFENAAAGNKPEAVEVTFADFDGVLYHISNPNGDKTKVMVSISLKF--YKELQ----AHGADE   74 (300)
T ss_dssp             CCSCCSSCHHHHHHHHHHHHHHHHTCCCCCCEEEEEETTTEEEEEECGGGCTTEEEEEEECTT--HHHHH----TTTHHH
T ss_pred             CccccccCHHHHHHHHHHHhhhccCCCCCccceEEecCCCcEEEeecCCCCCcEEEEEEEccc--hHHHh----hcCHHH
Confidence            999999999999999999987   468999999999999999999999999999999999999  66665    599999


Q ss_pred             HHHHhhcccccccCCCCCCcceEEEEcCCCCCCChhhHHHHHHHHHhHHHHHhhhHHHHHHHHHhccCcccccCcceEEe
Q 020327           78 AIKAAYGNVVQILDPPRDGFNLTLKLNLSKLPPNEENKHALLVKIASVREVVLGAPLRVVLKHLASKTVASDIDQLLALV  157 (327)
Q Consensus        78 ~Lk~~Yg~~~~i~~~pE~GYdvTL~iDL~~lp~~~e~~~~li~~~s~lKrn~laApF~~~f~~l~~~~~~~~~~~~~~i~  157 (327)
                      +|+++||+|+   .+||+|||+||.+||++||++++   ++|+++|+||||||||||+++|+ +++.  +++++.+++|+
T Consensus        75 ~Lk~~Yg~~v---~~pe~Gy~~tL~idl~~lp~~~~---~li~kia~LKrn~laapF~~~F~-~~~~--~~~~~~~~~I~  145 (300)
T 1k8k_D           75 LLKRVYGSYL---VNPESGYNVSLLYDLENLPASKD---SIVHQAGMLKRNCFASVFEKYFQ-FQEE--GKEGENRAVIH  145 (300)
T ss_dssp             HHHHHHGGGE---ESCCTTCSEEEEEETTSCCSCHH---HHHHHHHTHHHHHHHHHHHHHHH-HHHH--TCCSCCCEEEE
T ss_pred             HHHHHccccc---cCCCCCccEEEEEEHHHCCcCHH---HHHHHHHHHHHHHHHHHHHHHHH-HHhc--ccCCCceEEee
Confidence            9999999997   37999999999999999999944   59999999999999999999999 4433  33444559999


Q ss_pred             ccCCceEEEeecCCeeEEEEeceecCCccchhhhHHHHHHHHHhhhcCCCCCCCccCCC-CCCcccCCCCCcccCCCeeE
Q 020327          158 HRPKESFFLIPQAEKVTVVFPMRFNDSIDTVLATSFLQEFVEARRTAGLNNAPLCMWSS-SPPLELKGVPSETLSANAGF  236 (327)
Q Consensus       158 YR~dE~iyi~~~~DrVTVIFst~F~D~~D~vigkvFLQEFvdaRr~~~~~~APqVl~S~-~PPlEL~~~~~~~~~~n~gy  236 (327)
                      ||++|+|||+|++|||||||||+|+|+||+||||||||||+||||+  +++||||+||+ +||+||+|++ ...++|+||
T Consensus       146 YR~~E~iyi~~~~DrVTViFst~F~D~~D~v~gkvFlQEfvdaRr~--~~~APqvlfs~~~PPlEL~~~~-~~~~~n~gy  222 (300)
T 1k8k_D          146 YRDDETMYVESKKDRVTVVFSTVFKDDDDVVIGKVFMQEFKEGRRA--SHTAPQVLFSHREPPLELKDTD-AAVGDNIGY  222 (300)
T ss_dssp             EETTEEEEEEECSSCEEEEEEEECSSHHHHHHHHHHHHHHHTGGGT--CTTSCEEEEEESSCCGGGTTTT-CCCSTTEEE
T ss_pred             cCCCccEEEEeCCCeEEEEEEEeecCcchhhHHHHHHHHHHHHHhc--cCCCCceecCCCCCChHHcCCc-cccCCCeEE
Confidence            9999999999999999999999999999999999999999999999  99999999997 9999999987 556899999


Q ss_pred             EEEEeeccccCccchhhhhHHHhhhccccceeeeccchhhHHHHHHhHHHHHHHHhhhCCCc-cccccccccchhhh
Q 020327          237 VTFVIFPRHVEGKKLDRTVWNLSTFHAYVSYHVKCSEGFMHTRMRRRVESMIRTLDRAKPDA-EKLKKSTSNKSFKR  312 (327)
Q Consensus       237 VTFvLFprH~~~~~~~~ti~~l~~FR~YlhYHIKcSKaYmHsRMR~Rv~~~lkvLnRAkpe~-~~ekkT~sGr~f~~  312 (327)
                      |||||||||++++++++|||+||+|||||||||||||||||||||+||++|||||||||||. ++||||+|||||++
T Consensus       223 VTFvLfpRH~~~~~~~~ti~~i~~FR~YlhYHIKcSKaymHsRMR~Rv~~flkvLnRAkpe~~~~ekkT~sGrtf~~  299 (300)
T 1k8k_D          223 ITFVLFPRHTNASARDNTINLIHTFRDYLHYHIKCSKAYIHTRMRAKTSDFLKVLNRARPDAEKKEMKTITGKTFSS  299 (300)
T ss_dssp             EEEEECHHHHSTTTHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCC----------------
T ss_pred             EEEEeccccCCchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcCCCcccccceeccCceEec
Confidence            99999999999999999999999999999999999999999999999999999999999996 58999999999986

>3dwl_F Actin-related protein 2/3 complex subunit 4; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=93.61  E-value=0.29  Score=42.88  Aligned_cols=119  Identities=19%  Similarity=0.311  Sum_probs=96.7

Q ss_pred             CcceEEeccCCceEEEeecCCeeEEEEeceecCCccchhhhHHHHHHHHHhhhcCCCCCCCccCCCCCCcccCCCCCccc
Q 020327          151 DQLLALVHRPKESFFLIPQAEKVTVVFPMRFNDSIDTVLATSFLQEFVEARRTAGLNNAPLCMWSSSPPLELKGVPSETL  230 (327)
Q Consensus       151 ~~~~~i~YR~dE~iyi~~~~DrVTVIFst~F~D~~D~vigkvFLQEFvdaRr~~~~~~APqVl~S~~PPlEL~~~~~~~~  230 (327)
                      -.++.|..-+.|.++|.|+-+.|.|.|...-.|+-++++.+-|+. |.-.|-.     +=+||         |-.|-.  
T Consensus        48 l~p~~I~Rne~E~clIE~SiNSvRvSi~ikqaDeie~iL~~kf~r-Fl~~RAe-----~f~IL---------RrkPv~--  110 (168)
T 3dwl_F           48 LKPLVVSRNEQEQCLIESSVNSVRFSIRIKQVDEIERILVRKFMQ-FLMGRAE-----SFFIL---------RRKPVQ--  110 (168)
T ss_dssp             CCCEEEESSSSCEEEEEEBSSEEEEEEECCCCSSHHHHHHHHHHH-HHGGGTT-----TSTTB---------CSSCCT--
T ss_pred             cCceEEeecCCceEEEEcccceEEEEEEehhhchHHHHHHHHHHH-HHHhccc-----ceEEe---------eeCCcC--
Confidence            357899999999999999999999999999999999999999976 4444321     22233         222211  


Q ss_pred             CCCeeE-EEEEeeccccCccchhhhhHHHhhhccccceeeeccchhhHHHHHHhHHHHHHH
Q 020327          231 SANAGF-VTFVIFPRHVEGKKLDRTVWNLSTFHAYVSYHVKCSEGFMHTRMRRRVESMIRT  290 (327)
Q Consensus       231 ~~n~gy-VTFvLFprH~~~~~~~~ti~~l~~FR~YlhYHIKcSKaYmHsRMR~Rv~~~lkv  290 (327)
                          || |||.+.-.|++.--+.+-|+.|.+|=.-+---|.--|-.+.+|=|.=.++||+-
T Consensus       111 ----GYDISFLItn~H~e~m~k~kLvdFIi~FmeevdkeIsemKl~lnaRaR~~A~~fl~~  167 (168)
T 3dwl_F          111 ----GYDISFLITNYHTEEMLKHKLVDFIIEFMEEVDAEISEMKLFLNGRARLVAETYLSC  167 (168)
T ss_dssp             ----TCSEEEEEETTHHHHSCHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred             ----CcceeeeehHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence                33 899999999987667899999999999999999999999999999888888874

>1k8k_F P20, ARP2/3 complex 20 kDa subunit, P20-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: d.198.2.1 PDB: 1tyq_F* 1u2v_F* 2p9i_F* 2p9k_F* 2p9l_F 2p9n_F* 2p9p_F* 2p9s_F* 2p9u_F* 3dxk_F* 3dxm_F* 3rse_F

Probab=92.49  E-value=0.36  Score=42.39  Aligned_cols=118  Identities=19%  Similarity=0.291  Sum_probs=95.6

Q ss_pred             CcceEEeccCCceEEEeecCCeeEEEEeceecCCccchhhhHHHHHHHHHhhhcCCCCCCCccCCCCCCcccCCCCCccc
Q 020327          151 DQLLALVHRPKESFFLIPQAEKVTVVFPMRFNDSIDTVLATSFLQEFVEARRTAGLNNAPLCMWSSSPPLELKGVPSETL  230 (327)
Q Consensus       151 ~~~~~i~YR~dE~iyi~~~~DrVTVIFst~F~D~~D~vigkvFLQEFvdaRr~~~~~~APqVl~S~~PPlEL~~~~~~~~  230 (327)
                      -.++.|...+.|..+|.|+-+.|.|.+.....|+-+.++.+-|+. |.-.|-.     +=+||-.         .|-.  
T Consensus        48 l~pl~i~Rne~E~clIE~SiNSvRvSi~ikq~DeiE~iL~~kf~r-Fl~~RAe-----~f~ILRr---------kPv~--  110 (168)
T 1k8k_F           48 LQPVTISRNEKEKVLIEGSINSVRVSIAVKQADEIEKILCHKFMR-FMMMRAE-----NFFILRR---------KPVE--  110 (168)
T ss_dssp             CCCEEEESSSSCEEEEEEBSSEEEEEEECCCCSHHHHHHHHHHHH-HHHHTTT-----TSTTBCS---------SCCT--
T ss_pred             ccceEEEecCCceEEEEcccceEEEEEEEcccChHHHHHHHHHHH-HHHhccc-----ceEEeee---------CCcC--
Confidence            357899989999999999999999999999999999999999976 5444432     2233333         2211  


Q ss_pred             CCCeeE-EEEEeeccccCccchhhhhHHHhhhccccceeeeccchhhHHHHHHhHHHHHH
Q 020327          231 SANAGF-VTFVIFPRHVEGKKLDRTVWNLSTFHAYVSYHVKCSEGFMHTRMRRRVESMIR  289 (327)
Q Consensus       231 ~~n~gy-VTFvLFprH~~~~~~~~ti~~l~~FR~YlhYHIKcSKaYmHsRMR~Rv~~~lk  289 (327)
                          || |||.+.--|++.--+.+-|+.|.+|=.-.---|.--|-.+-+|=|.=.++|++
T Consensus       111 ----GYDISFLItn~h~e~m~k~kLidFIi~FmeeiDkeIsemKl~~NaRaR~~A~~fl~  166 (168)
T 1k8k_F          111 ----GYDISFLITNFHTEQMYKHKLVDFVIHFMEEIDKEISEMKLSVNARARIVAEEFLK  166 (168)
T ss_dssp             ----TCSEEEEEEHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             ----CccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhh
Confidence                33 89999999998766789999999999998888988999999999888888875

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	327
d1k8kd2	164	d.198.2.1 (D:121-284) ARPC2 (34 kDa subunit) {Cow	5e-65
d1k8kd1	120	d.198.2.1 (D:1-120) ARPC2 (34 kDa subunit) {Cow (B	1e-29

>d1k8kd2 d.198.2.1 (D:121-284) ARPC2 (34 kDa subunit) {Cow (Bos taurus) [TaxId: 9913]} Length = 164

class: Alpha and beta proteins (a+b)
fold: Secretion chaperone-like
superfamily: Arp2/3 complex subunits
family: Arp2/3 complex subunits
domain: ARPC2 (34 kDa subunit)
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  200 bits (510), Expect = 5e-65
 Identities = 57/153 (37%), Positives = 90/153 (58%), Gaps = 4/153 (2%)

Query: 147 ASDIDQLLALVHRPKESFFLIPQAEKVTVVFPMRFNDSIDTVLATSFLQEFVEARRTAGL 206
             + +    + +R  E+ ++  + ++VTVVF   F D  D V+   F+QEF E RR +  
Sbjct: 15  GKEGENRAVIHYRDDETMYVESKKDRVTVVFSTVFKDDDDVVIGKVFMQEFKEGRRAS-- 72

Query: 207 NNAPLCMWS-SSPPLELKGVPSETLSANAGFVTFVIFPRHVEGKKLDRTVWNLSTFHAYV 265
           + AP  ++S   PPLELK   +  +  N G++TFV+FPRH      D T+  + TF  Y+
Sbjct: 73  HTAPQVLFSHREPPLELKDTDA-AVGDNIGYITFVLFPRHTNASARDNTINLIHTFRDYL 131

Query: 266 SYHVKCSEGFMHTRMRRRVESMIRTLDRAKPDA 298
            YH+KCS+ ++HTRMR +    ++ L+RA+PDA
Sbjct: 132 HYHIKCSKAYIHTRMRAKTSDFLKVLNRARPDA 164

>d1k8kd1 d.198.2.1 (D:1-120) ARPC2 (34 kDa subunit) {Cow (Bos taurus) [TaxId: 9913]} Length = 120

class: Alpha and beta proteins (a+b)
fold: Secretion chaperone-like
superfamily: Arp2/3 complex subunits
family: Arp2/3 complex subunits
domain: ARPC2 (34 kDa subunit)
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  107 bits (270), Expect = 1e-29
 Identities = 32/129 (24%), Positives = 63/129 (48%), Gaps = 15/129 (11%)

Query: 1   MLLLQSHSRFLLEALLNRVQN---VDKATEVDYHWVEFDDVRYHVQVTMKNPHIVLLSVS 57
           M+LL+ ++R + E L  + +N    +K   V+  + +FD V YH+     +   V++S+S
Sbjct: 1   MILLEVNNRIIEETLALKFENAAAGNKPEAVEVTFADFDGVLYHISNPNGDKTKVMVSIS 60

Query: 58  LPVPPPETIFIGGLPFGAIEAIKAAYGNVVQILDPPRDGFNLTLKLNLSKLPPNEENKHA 117
           L        +      GA E +K  YG     L  P  G+N++L  +L  LP +++   +
Sbjct: 61  LKF------YKELQAHGADELLKRVYG---SYLVNPESGYNVSLLYDLENLPASKD---S 108

Query: 118 LLVKIASVR 126
           ++ +   ++
Sbjct: 109 IVHQAGMLK 117

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	327
d1k8kd2	164	ARPC2 (34 kDa subunit) {Cow (Bos taurus) [TaxId: 9	100.0
d1k8kd1	120	ARPC2 (34 kDa subunit) {Cow (Bos taurus) [TaxId: 9	100.0
d1k8kf_	167	ARPC4 (20 kDa subunit) {Cow (Bos taurus) [TaxId: 9	93.21

>d1k8kd2 d.198.2.1 (D:121-284) ARPC2 (34 kDa subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Secretion chaperone-like
superfamily: Arp2/3 complex subunits
family: Arp2/3 complex subunits
domain: ARPC2 (34 kDa subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=7.8e-83  Score=556.81  Aligned_cols=163  Identities=35%  Similarity=0.685  Sum_probs=151.9

Q ss_pred             hhhHHHHHHHHHhccCcccccCcceEEeccCCceEEEeecCCeeEEEEeceecCCccchhhhHHHHHHHHHhhhcCCCCC
Q 020327          130 LGAPLRVVLKHLASKTVASDIDQLLALVHRPKESFFLIPQAEKVTVVFPMRFNDSIDTVLATSFLQEFVEARRTAGLNNA  209 (327)
Q Consensus       130 laApF~~~f~~l~~~~~~~~~~~~~~i~YR~dE~iyi~~~~DrVTVIFst~F~D~~D~vigkvFLQEFvdaRr~~~~~~A  209 (327)
                      |||+|+++|+-...   +++++++++||||+||+|||+|++|||||||||+|+|+||+||||||||||+||||+  +++|
T Consensus         1 Fa~~Fek~f~~q~~---~~~g~~~~~i~YR~~E~~yv~~~~drvTViFs~~F~d~~D~v~gkvFlQEf~daRr~--~~~A   75 (164)
T d1k8kd2           1 FASVFEKYFQFQEE---GKEGENRAVIHYRDDETMYVESKKDRVTVVFSTVFKDDDDVVIGKVFMQEFKEGRRA--SHTA   75 (164)
T ss_dssp             HHHHHHHHHHHHHH---TCCSCCCEEEEEETTEEEEEEECSSCEEEEEEEECSSHHHHHHHHHHHHHHHTGGGT--CTTS
T ss_pred             CchHHHHHHHHHHh---cccccceeEEecCCCccEEEEeCCCcEEEEEEEEecCcchHHHHHHHHHHHHHHhcc--cCCC
Confidence            68999999973322   334567899999999999999999999999999999999999999999999999986  8999


Q ss_pred             CCccCCC-CCCcccCCCCCcccCCCeeEEEEEeeccccCccchhhhhHHHhhhccccceeeeccchhhHHHHHHhHHHHH
Q 020327          210 PLCMWSS-SPPLELKGVPSETLSANAGFVTFVIFPRHVEGKKLDRTVWNLSTFHAYVSYHVKCSEGFMHTRMRRRVESMI  288 (327)
Q Consensus       210 PqVl~S~-~PPlEL~~~~~~~~~~n~gyVTFvLFprH~~~~~~~~ti~~l~~FR~YlhYHIKcSKaYmHsRMR~Rv~~~l  288 (327)
                      |||+||+ +||+||+++++ ..++|+|||||||||||++++++++|||+|++|||||||||||||||||+|||+||++||
T Consensus        76 Pqvl~s~~~PPlel~~~~~-~~~~n~gyvTFvLfpRH~~~~~~~~ti~~i~~FR~YlhYHIKcSKaymHsRMR~Rv~~fl  154 (164)
T d1k8kd2          76 PQVLFSHREPPLELKDTDA-AVGDNIGYITFVLFPRHTNASARDNTINLIHTFRDYLHYHIKCSKAYIHTRMRAKTSDFL  154 (164)
T ss_dssp             CEEEEEESSCCGGGTTTTC-CCSTTEEEEEEEECHHHHSTTTHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CccccCCCCCchHhcCCCc-ccCCCcceEEEEecccccCchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            9999996 99999999855 678999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhCCCc
Q 020327          289 RTLDRAKPDA  298 (327)
Q Consensus       289 kvLnRAkpe~  298 (327)
                      |||||||||.
T Consensus       155 kvLnrAkpe~  164 (164)
T d1k8kd2         155 KVLNRARPDA  164 (164)
T ss_dssp             HHHHTTSCC-
T ss_pred             HHHHhcCCCC
Confidence            9999999983

>d1k8kd1 d.198.2.1 (D:1-120) ARPC2 (34 kDa subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Secretion chaperone-like
superfamily: Arp2/3 complex subunits
family: Arp2/3 complex subunits
domain: ARPC2 (34 kDa subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=2.9e-43  Score=294.38  Aligned_cols=117  Identities=26%  Similarity=0.509  Sum_probs=109.7

Q ss_pred             CcccccccHHHHHHHHHhhhcc---CCCcccceEEeecCceEEEEecCCCCCceEEEEEeeCCCCCccccccCCCccHHH
Q 020327            1 MLLLQSHSRFLLEALLNRVQNV---DKATEVDYHWVEFDDVRYHVQVTMKNPHIVLLSVSLPVPPPETIFIGGLPFGAIE   77 (327)
Q Consensus         1 MilLe~~N~ii~~~L~~~~~~~---~kp~~id~~~~DFD~v~yHis~~~~~k~~l~lSislk~~~~~~~~~~~l~~Ga~e   77 (327)
                      ||+||++|+||+++|++||.++   .||.++|++++|||||+||||++++||++|+|||++||  |.++.    +|||.|
T Consensus         1 MilLe~~N~ii~~tL~er~~~~~~g~kp~svD~~~~DFDgv~yHIs~~~~dk~ki~vSislk~--~~~L~----~~Ga~e   74 (120)
T d1k8kd1           1 MILLEVNNRIIEETLALKFENAAAGNKPEAVEVTFADFDGVLYHISNPNGDKTKVMVSISLKF--YKELQ----AHGADE   74 (120)
T ss_dssp             CCSCCSSCHHHHHHHHHHHHHHHHTCCCCCCEEEEEETTTEEEEEECGGGCTTEEEEEEECTT--HHHHH----TTTHHH
T ss_pred             CeecccccHHHHHHHHHHHhcccccCCCccceeEEEccCCcEEEeeCCCCCCceEEEEEEhhh--hHHHH----HcCHHH
Confidence            9999999999999999999653   68999999999999999999999999999999999999  66666    599999


Q ss_pred             HHHHhhcccccccCCCCCCcceEEEEcCCCCCCChhhHHHHHHHHHhHHHHH
Q 020327           78 AIKAAYGNVVQILDPPRDGFNLTLKLNLSKLPPNEENKHALLVKIASVREVV  129 (327)
Q Consensus        78 ~Lk~~Yg~~~~i~~~pE~GYdvTL~iDL~~lp~~~e~~~~li~~~s~lKrn~  129 (327)
                      +|+++||+|+   .+||+|||+||++||++||+++++   +|+++|+|||||
T Consensus        75 ~L~~~Yg~~~---~~pE~GY~~sl~~dL~~lp~~~e~---li~~islLKRnc  120 (120)
T d1k8kd1          75 LLKRVYGSYL---VNPESGYNVSLLYDLENLPASKDS---IVHQAGMLKRNC  120 (120)
T ss_dssp             HHHHHHGGGE---ESCCTTCSEEEEEETTSCCSCHHH---HHHHHHTHHHHH
T ss_pred             HHHHHhhccc---CCCCCCceEEEEEEHHhCCCCHHH---HHHHHHhhccCC
Confidence            9999999996   579999999999999999998764   999999999998

>d1k8kf_ d.198.2.1 (F:) ARPC4 (20 kDa subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Secretion chaperone-like
superfamily: Arp2/3 complex subunits
family: Arp2/3 complex subunits
domain: ARPC4 (20 kDa subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=93.21  E-value=0.12  Score=43.37  Aligned_cols=118  Identities=19%  Similarity=0.281  Sum_probs=95.1

Q ss_pred             CcceEEeccCCceEEEeecCCeeEEEEeceecCCccchhhhHHHHHHHHHhhhcCCCCCCCccCCCCCCcccCCCCCccc
Q 020327          151 DQLLALVHRPKESFFLIPQAEKVTVVFPMRFNDSIDTVLATSFLQEFVEARRTAGLNNAPLCMWSSSPPLELKGVPSETL  230 (327)
Q Consensus       151 ~~~~~i~YR~dE~iyi~~~~DrVTVIFst~F~D~~D~vigkvFLQEFvdaRr~~~~~~APqVl~S~~PPlEL~~~~~~~~  230 (327)
                      -.++.|...++|.++|.++-+.|.|.+.....|+-+.++++-|+. |.-.|-.     +=+||--         .|-   
T Consensus        47 l~pl~i~R~e~E~clIE~SiNSvRiSi~ikq~Deie~iL~~kf~~-Fl~~rae-----~F~ILRr---------kPi---  108 (167)
T d1k8kf_          47 LQPVTISRNEKEKVLIEGSINSVRVSIAVKQADEIEKILCHKFMR-FMMMRAE-----NFFILRR---------KPV---  108 (167)
T ss_dssp             CCCEEEESSSSCEEEEEEBSSEEEEEEECCCCSHHHHHHHHHHHH-HHHHTTT-----TSTTBCS---------SCC---
T ss_pred             cccEEEEEcCCceEEEEcccceEEEEEEecccchHHHHHHHHHHH-HHHHhhh-----hceeeee---------cCc---
Confidence            357888888999999999999999999999999999999999977 5555533     2222322         211   


Q ss_pred             CCCeeE-EEEEeeccccCccchhhhhHHHhhhccccceeeeccchhhHHHHHHhHHHHHH
Q 020327          231 SANAGF-VTFVIFPRHVEGKKLDRTVWNLSTFHAYVSYHVKCSEGFMHTRMRRRVESMIR  289 (327)
Q Consensus       231 ~~n~gy-VTFvLFprH~~~~~~~~ti~~l~~FR~YlhYHIKcSKaYmHsRMR~Rv~~~lk  289 (327)
                         -|| |||.+.--|++.-.+.+-|+.|.+|=.=.---|.--|-.+-+|=|.=.++||+
T Consensus       109 ---~GYDISFLItn~h~e~m~k~klvdFIi~FmeeiDkeIsemKL~~n~raR~~Ae~fl~  165 (167)
T d1k8kf_         109 ---EGYDISFLITNFHTEQMYKHKLVDFVIHFMEEIDKEISEMKLSVNARARIVAEEFLK  165 (167)
T ss_dssp             ---TTCSEEEEEEHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             ---CCCceeeeehhHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence               134 89999999998766789999999998888888888899999999888888875