Citrus Sinensis ID: 020338

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------
MQQMQNDGVSANPYSNHGVASSKSQDDENADAFASLYSSLVMAQPETTLSHNPYNDPTIHDSLYYSRLLIRQQQQQQHQDMINRHNLCLTRLREAAREAEALRQENDSLRTVNRELNKHVSLLIKSSVNEQLSCGNNDAATSFGVVNGMRGLSIAGGGEEVSAESPTSVMENVDVKRVSLPKSISVRSNGYLKMGQPAAAAAAAAASKTRPRTPAPLRPTQKVYVKGGQQEEEPLELEVYNQGMFKTELCNKWQETGACPYGDHCQFAHGIEELRPVIRHPRYKTEVCRMVLAGDVCPYGHRCHFRHALTEQERFMGHLNPRSIKLN
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccc
ccccccccccccccccccEEEcccccHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHcccccccccccccccccccccccccccccccccccEEEEccccccccccccccccccccccccccccccccHHHHHccccccccccccccccccccccHHccccHHHccccccccccEEccccHHccccccccccccccHHHEEEcccccccccEEEEEcccccccccccccccccccc
mqqmqndgvsanpysnhgvassksqddeNADAFASLYSSLvmaqpettlshnpyndptihdslYYSRLLIRQQQQQQHQDMINRHNLCLTRLREAAREAEALRQENDSLRTVNRELNKHVSLLIKSSVNeqlscgnndaatsfGVVNGmrglsiagggeevsaesptsvmenvdvkrvslpksisvrsngylkmgQPAAAAAAAAAsktrprtpaplrptqkvyvkggqqeeeplelevyNQGMFKTELCNKwqetgacpygdhcqfahgieelrpvirhpryktEVCRMVlagdvcpyghrchfrhALTEQERFmghlnprsikln
mqqmqndgvsanpysNHGVASSKSQDDENADAFASLYSSLVMAQPETTLSHNPYNDPTIHDSLYYSRLLIRQQQQQQHQDMINRHNLCLTRLREAAREAEAlrqendslrtvNRELNKHVSLLIKSSVNEQLSCGNNDAATSFGVVNGMRGLSIAGGGeevsaesptsvmenvdvkrvsLPKSISVRSNGYLKMGQPAAAAAAAAAsktrprtpaplrptqkvyvkggqqeeepLELEVYNQGMFKTELCNKWQETGACPYGDHCQFAHGIEELRPVIRHPRYKTEVCRMVLAGDVCPYGHRCHFRHALTEQErfmghlnprsikln
MQQMQNDGVSANPYSNHGVASSKSQDDENADAFASLYSSLVMAQPETTLSHNPYNDPTIHDSLYYSRLLIRqqqqqqhqDMINRHNlcltrlreaareaealrqeNDSLRTVNRELNKHVSLLIKSSVNEQLSCGNNDAATSFGVVNGMRGLSIAGGGEEVSAESPTSVMENVDVKRVSLPKSISVRSNGYLKMGQPaaaaaaaaaSKtrprtpaplrptQKVYVKggqqeeepleleVYNQGMFKTELCNKWQETGACPYGDHCQFAHGIEELRPVIRHPRYKTEVCRMVLAGDVCPYGHRCHFRHALTEQERFMGHLNPRSIKLN
*****************************************************YNDPTIHDSLYYSRLLIRQ********MINRHNLCLTRL*************************KHVSLLIKSSVNEQLSCGNNDAATSFGVVNGMRGLS**********************************************************************************ELEVYNQGMFKTELCNKWQETGACPYGDHCQFAHGIEELRPVIRHPRYKTEVCRMVLAGDVCPYGHRCHFRHALTEQERF************
****************************************************************************QHQDMINRHNLCLTRLREAAREAEALRQENDSLRTVNRELNKHV*******************************************************************************************************************************ELCNKWQETGACPYGDHCQFAHGIEELRPVIRHPRYKTEVCRMVLAGDVCPYGHRCHFR*********************
***********NPYS************ENADAFASLYSSLVMAQPETTLSHNPYNDPTIHDSLYYSRLLIR********DMINRHNLCLTRLREAAREAEALRQENDSLRTVNRELNKHVSLLIKSSVNEQLSCGNNDAATSFGVVNGMRGLSIAG*************MENVDVKRVSLPKSISVRSNGYLKM*********************PLRPTQKVYVKGGQQEEEPLELEVYNQGMFKTELCNKWQETGACPYGDHCQFAHGIEELRPVIRHPRYKTEVCRMVLAGDVCPYGHRCHFRHALTEQERFMGHLNPRSIKLN
**************SNHGVASSKSQDDENADAFASLYSSLVM***************TIHDSLYYSRLLIRQQQQQQHQDMINRHNLCLTRLREAAREAEALRQENDSLRTVNRELNKHVSLLIKSSVNEQLSCGNNDAATSFGVVNGMRGLSI************************SLPKSISVRSNGY**************************************************QGMFKTELCNKWQETGACPYGDHCQFAHGIEELRPVIRHPRYKTEVCRMVLAGDVCPYGHRCHFRHAL******************
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MQQMQNDGVSANPYSNHGVASSKSQDDENADAFASLYSSLVMAQPETTLSHNPYNDPTIHDSLYYSRLLIRQQQQQQHQDMINRHNLCLTRxxxxxxxxxxxxxxxxxxxxxxxxxxxxVSLLIKSSVNEQLSCGNNDAATSFGVVNGMRGLSIAGGGEEVSAESPTSVMENVDVKRVSLPKSISVRSNGYLKMGQPAAAAAAAAASKTRPRTPAPLRPTQKVYVKGGQQEEEPLELEVYNQGMFKTELCNKWQETGACPYGDHCQFAHGIEELRPVIRHPRYKTEVCRMVLAGDVCPYGHRCHFRHALTEQERFMGHLNPRSIKLN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query327 2.2.26 [Sep-21-2011]
Q9C9F5308 Zinc finger CCCH domain-c yes no 0.752 0.798 0.561 2e-71
Q9C9N3310 Zinc finger CCCH domain-c no no 0.782 0.825 0.436 3e-53
A2ZVY5333 Zinc finger CCCH domain-c yes no 0.678 0.666 0.529 6e-53
Q6L5G1343 Zinc finger CCCH domain-c no no 0.672 0.641 0.469 6e-52
Q10MN8457 Putative zinc finger CCCH no no 0.443 0.317 0.447 9e-31
Q07352 338 Zinc finger protein 36, C yes no 0.275 0.266 0.504 2e-21
P23950 338 Zinc finger protein 36, C yes no 0.293 0.284 0.465 3e-21
P17431 338 Zinc finger protein 36, C yes no 0.293 0.284 0.465 3e-21
Q7ZXW9 363 Zinc finger protein 36, C N/A no 0.235 0.212 0.532 3e-20
Q805B4 364 Zinc finger protein 36, C N/A no 0.235 0.211 0.532 8e-20
>sp|Q9C9F5|C3H15_ARATH Zinc finger CCCH domain-containing protein 15 OS=Arabidopsis thaliana GN=At1g68200 PE=2 SV=1 Back     alignment and function desciption
 Score =  269 bits (688), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 155/276 (56%), Positives = 184/276 (66%), Gaps = 30/276 (10%)

Query: 61  DSLYYSRLLIRQQQQQQHQDMINRHNLCLTRLREAAREAEALRQENDSLRTVNRELNKHV 120
           D LY S   I     QQ QDM+NR  LC TRL EA+ EAEALR EN  LR++N  L   +
Sbjct: 31  DQLYKSTRNI----MQQRQDMVNREALCYTRLHEASLEAEALRLENTELRSMNLRLKNEL 86

Query: 121 SLLIKSSVNEQ------------LSCGNNDAATSFGVVNGMRGLSIAGGGEEVSAESPTS 168
           + LI+SS+  +            LS G NDA     V N  R ++     ++V+ +SPTS
Sbjct: 87  NSLIRSSIQNRFDHRSPLRMLSNLSIGGNDADE---VENQNRTVN----RDDVNDKSPTS 139

Query: 169 VMENVDVKRVSLPKSISVRSNGYLKMGQPAAAAAAAA----ASKTRPRTPAPLRPTQKVY 224
           VMEN D+ R SLPKSISVRSNGY K  Q    AAA +     + T+P T   +  TQKVY
Sbjct: 140 VMENEDLNRSSLPKSISVRSNGYSKASQGGGGAAAQSGKPRGTVTKPGTCGQVSTTQKVY 199

Query: 225 VKGGQQEEEPLELE---VYNQGMFKTELCNKWQETGACPYGDHCQFAHGIEELRPVIRHP 281
           V+GG ++E+  E     VYNQGM KTELCNKWQETG CPYGDHCQFAHGI+ELRPVIRHP
Sbjct: 200 VRGGGKKEDQEEEIEVEVYNQGMTKTELCNKWQETGTCPYGDHCQFAHGIKELRPVIRHP 259

Query: 282 RYKTEVCRMVLAGDVCPYGHRCHFRHALTEQERFMG 317
           RYKTEVCRMVLAGD CPYGHRCHFRH+L+EQE+ + 
Sbjct: 260 RYKTEVCRMVLAGDNCPYGHRCHFRHSLSEQEKLVA 295

Arabidopsis thaliana (taxid: 3702)
>sp|Q9C9N3|C3H14_ARATH Zinc finger CCCH domain-containing protein 14 OS=Arabidopsis thaliana GN=At1g66810 PE=2 SV=1 Back     alignment and function description
>sp|A2ZVY5|C3H9_ORYSJ Zinc finger CCCH domain-containing protein 9 OS=Oryza sativa subsp. japonica GN=Os01g0645000 PE=2 SV=1 Back     alignment and function description
>sp|Q6L5G1|C3H39_ORYSJ Zinc finger CCCH domain-containing protein 39 OS=Oryza sativa subsp. japonica GN=Os05g0576300 PE=2 SV=1 Back     alignment and function description
>sp|Q10MN8|C3H21_ORYSJ Putative zinc finger CCCH domain-containing protein 21 OS=Oryza sativa subsp. japonica GN=Os03g0301500 PE=4 SV=1 Back     alignment and function description
>sp|Q07352|TISB_HUMAN Zinc finger protein 36, C3H1 type-like 1 OS=Homo sapiens GN=ZFP36L1 PE=1 SV=1 Back     alignment and function description
>sp|P23950|TISB_MOUSE Zinc finger protein 36, C3H1 type-like 1 OS=Mus musculus GN=Zfp36l1 PE=1 SV=1 Back     alignment and function description
>sp|P17431|TISB_RAT Zinc finger protein 36, C3H1 type-like 1 OS=Rattus norvegicus GN=Zfp36l1 PE=1 SV=1 Back     alignment and function description
>sp|Q7ZXW9|TISDA_XENLA Zinc finger protein 36, C3H1 type-like 2-A OS=Xenopus laevis GN=zfp36l2-A PE=2 SV=1 Back     alignment and function description
>sp|Q805B4|TISDB_XENLA Zinc finger protein 36, C3H1 type-like 2-B OS=Xenopus laevis GN=zfp36l2-B PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query327
297737756398 unnamed protein product [Vitis vinifera] 0.963 0.791 0.534 7e-97
359472655396 PREDICTED: zinc finger CCCH domain-conta 0.963 0.795 0.534 7e-97
449467473351 PREDICTED: zinc finger CCCH domain-conta 0.883 0.823 0.6 2e-95
356534336360 PREDICTED: zinc finger CCCH domain-conta 0.767 0.697 0.580 2e-84
255570689311 zinc finger protein, putative [Ricinus c 0.874 0.919 0.528 1e-81
356574244321 PREDICTED: zinc finger CCCH domain-conta 0.740 0.753 0.613 1e-80
297838575310 zinc finger (CCCH-type) family protein [ 0.776 0.819 0.561 2e-71
15221301308 zinc finger CCCH domain-containing prote 0.752 0.798 0.561 1e-69
145326690307 zinc finger CCCH domain-containing prote 0.749 0.798 0.557 7e-68
326510811338 predicted protein [Hordeum vulgare subsp 0.663 0.642 0.501 3e-56
>gi|297737756|emb|CBI26957.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  360 bits (923), Expect = 7e-97,   Method: Compositional matrix adjust.
 Identities = 193/361 (53%), Positives = 240/361 (66%), Gaps = 46/361 (12%)

Query: 3   QMQNDGVSANPYSNHGVASSKSQDDENADAFASLYSSLVMAQPE----TTLSHNPYND-- 56
           QMQ D +S +P       SS + +  +   F SLYSS+   +P      +L+ + Y+   
Sbjct: 47  QMQKD-ISISP-GGIKFFSSPAGNRSDGLGFPSLYSSIFSPKPSLSNSVSLTPSEYSTDE 104

Query: 57  -----------PTIHDSLYY--------SRLLIRQQQQQQHQDMINRHNLCLTRLREAAR 97
                      PT  D++          SRL+       +HQD+INRHNLCL  LRE A+
Sbjct: 105 DVNNNSNNNSTPTSIDNVQALEVPYSPPSRLIY------EHQDLINRHNLCLNHLRETAQ 158

Query: 98  EAEALRQENDSLRTVNRELNKHVSLLIKSSVNEQLSCGNNDAATSFGVVNGMRGLSIAGG 157
           EAE LR EN +LR  NR+LNK +SLLI++S+  +    N++ ++S  + +  R L +  G
Sbjct: 159 EAEVLRHENSNLRIANRDLNKRLSLLIQNSIQNRFV--NSEYSSSRSMADEFRRLGLGDG 216

Query: 158 GE------EVSAESPTSVMEN-----VDVKRVSLPKSISVRSNGYLKMGQPAAAAAAAAA 206
            E      E+S ESPTSV+E+     +DV+R++LPKSISVRSNGYLKM QP  +      
Sbjct: 217 NETRSWDDEISNESPTSVIESDRVERIDVERITLPKSISVRSNGYLKMSQPGTSEGGRTR 276

Query: 207 SKTRPRTPAPLRPTQKVYVKGGQQEEEPLELEVYNQGMFKTELCNKWQETGACPYGDHCQ 266
              R RT +PL  TQKVYV+G ++EEEP+ELEVYNQGMFKTELCNKWQE+G CPYGDHCQ
Sbjct: 277 IPNRLRTTSPLNGTQKVYVRGVKKEEEPVELEVYNQGMFKTELCNKWQESGTCPYGDHCQ 336

Query: 267 FAHGIEELRPVIRHPRYKTEVCRMVLAGDVCPYGHRCHFRHALTEQERFMGHLNPRSIKL 326
           FAHGIEELRPVIRHPRYKTEVCRMVLAGD CPYGHRCHFRHALTEQERFMG L PR+IKL
Sbjct: 337 FAHGIEELRPVIRHPRYKTEVCRMVLAGDACPYGHRCHFRHALTEQERFMGQLQPRAIKL 396

Query: 327 N 327
           +
Sbjct: 397 D 397

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359472655|ref|XP_002282967.2| PREDICTED: zinc finger CCCH domain-containing protein 15 [Vitis vinifera] Back     alignment and taxonomy information
>gi|449467473|ref|XP_004151447.1| PREDICTED: zinc finger CCCH domain-containing protein 15-like [Cucumis sativus] gi|449521453|ref|XP_004167744.1| PREDICTED: zinc finger CCCH domain-containing protein 15-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356534336|ref|XP_003535712.1| PREDICTED: zinc finger CCCH domain-containing protein 15-like [Glycine max] Back     alignment and taxonomy information
>gi|255570689|ref|XP_002526299.1| zinc finger protein, putative [Ricinus communis] gi|223534380|gb|EEF36088.1| zinc finger protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356574244|ref|XP_003555260.1| PREDICTED: zinc finger CCCH domain-containing protein 15-like [Glycine max] Back     alignment and taxonomy information
>gi|297838575|ref|XP_002887169.1| zinc finger (CCCH-type) family protein [Arabidopsis lyrata subsp. lyrata] gi|297333010|gb|EFH63428.1| zinc finger (CCCH-type) family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|15221301|ref|NP_176987.1| zinc finger CCCH domain-containing protein 15 [Arabidopsis thaliana] gi|75333565|sp|Q9C9F5.1|C3H15_ARATH RecName: Full=Zinc finger CCCH domain-containing protein 15; Short=AtC3H15 gi|12325330|gb|AAG52611.1|AC016447_20 putative zinc finger protein; 81747-79917 [Arabidopsis thaliana] gi|67633492|gb|AAY78670.1| zinc finger (CCCH-type) family protein [Arabidopsis thaliana] gi|109946509|gb|ABG48433.1| At1g68200 [Arabidopsis thaliana] gi|332196642|gb|AEE34763.1| zinc finger CCCH domain-containing protein 15 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|145326690|ref|NP_001077792.1| zinc finger CCCH domain-containing protein 15 [Arabidopsis thaliana] gi|91806051|gb|ABE65754.1| zinc finger family protein [Arabidopsis thaliana] gi|332196643|gb|AEE34764.1| zinc finger CCCH domain-containing protein 15 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|326510811|dbj|BAJ91753.1| predicted protein [Hordeum vulgare subsp. vulgare] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query327
TAIR|locus:2199352308 AT1G68200 [Arabidopsis thalian 0.733 0.779 0.470 3.5e-52
TAIR|locus:2033384310 AT1G66810 [Arabidopsis thalian 0.418 0.441 0.595 1.8e-46
UNIPROTKB|A7MB98 338 ZFP36L1 "Uncharacterized prote 0.235 0.227 0.558 3.9e-21
UNIPROTKB|E2R2W0 338 ZFP36L1 "Uncharacterized prote 0.235 0.227 0.558 3.9e-21
UNIPROTKB|G3V2D5176 ZFP36L1 "Zinc finger protein 3 0.235 0.437 0.558 3.9e-21
UNIPROTKB|G3V2P5207 ZFP36L1 "Zinc finger protein 3 0.235 0.371 0.558 3.9e-21
UNIPROTKB|Q07352 338 ZFP36L1 "Zinc finger protein 3 0.235 0.227 0.558 3.9e-21
UNIPROTKB|I3LB77 338 ZFP36L1 "Uncharacterized prote 0.235 0.227 0.558 3.9e-21
MGI|MGI:107946 338 Zfp36l1 "zinc finger protein 3 0.235 0.227 0.558 3.9e-21
RGD|62009 338 Zfp36l1 "zinc finger protein 3 0.235 0.227 0.558 3.9e-21
TAIR|locus:2199352 AT1G68200 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 541 (195.5 bits), Expect = 3.5e-52, P = 3.5e-52
 Identities = 126/268 (47%), Positives = 149/268 (55%)

Query:    80 DMINRHNXXXXXXXXXXXXXXXXXXXNDSLRTVNRELNKHVSLLIKSSVNEQ-------- 131
             DM+NR                     N  LR++N  L   ++ LI+SS+  +        
Sbjct:    46 DMVNREALCYTRLHEASLEAEALRLENTELRSMNLRLKNELNSLIRSSIQNRFDHRSPLR 105

Query:   132 ----LSCGNNDAATSFGVVNGMRGLSIAGGGEEVSAESPTSVMENVDVKRVSLPKSISVR 187
                 LS G NDA     V N  R ++     ++V+ +SPTSVMEN D+ R SLPKSISVR
Sbjct:   106 MLSNLSIGGNDADE---VENQNRTVN----RDDVNDKSPTSVMENEDLNRSSLPKSISVR 158

Query:   188 SNGYLKMGQPXXXXXXXXXSKXXXXXXXXX----XXXQKVYVKXXXXXXXXXXXX---VY 240
             SNGY K  Q                            QKVYV+               VY
Sbjct:   159 SNGYSKASQGGGGAAAQSGKPRGTVTKPGTCGQVSTTQKVYVRGGGKKEDQEEEIEVEVY 218

Query:   241 NQGMFKTELCNKWQETGACPYGDHCQFAHGIEELRPVIRHPRYKTEVCRMVLAGDVCPYG 300
             NQGM KTELCNKWQETG CPYGDHCQFAHGI+ELRPVIRHPRYKTEVCRMVLAGD CPYG
Sbjct:   219 NQGMTKTELCNKWQETGTCPYGDHCQFAHGIKELRPVIRHPRYKTEVCRMVLAGDNCPYG 278

Query:   301 HRCHFRHALTEQERFMGH-LNPRS-IKL 326
             HRCHFRH+L+EQE+ +     P+S +KL
Sbjct:   279 HRCHFRHSLSEQEKLVAAGFKPKSSLKL 306
GO:0003676 "nucleic acid binding" evidence=IEA;ISS
GO:0005634 "nucleus" evidence=ISM
GO:0008270 "zinc ion binding" evidence=IEA
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS
GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS
TAIR|locus:2033384 AT1G66810 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|A7MB98 ZFP36L1 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2R2W0 ZFP36L1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|G3V2D5 ZFP36L1 "Zinc finger protein 36, C3H1 type-like 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|G3V2P5 ZFP36L1 "Zinc finger protein 36, C3H1 type-like 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q07352 ZFP36L1 "Zinc finger protein 36, C3H1 type-like 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|I3LB77 ZFP36L1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
MGI|MGI:107946 Zfp36l1 "zinc finger protein 36, C3H type-like 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|62009 Zfp36l1 "zinc finger protein 36, C3H type-like 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
A2ZVY5C3H9_ORYSJNo assigned EC number0.52980.67880.6666yesno
Q9C9F5C3H15_ARATHNo assigned EC number0.56150.75220.7987yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query327
pfam0064227 pfam00642, zf-CCCH, Zinc finger C-x8-C-x5-C-x3-H t 2e-10
COG5063351 COG5063, CTH1, CCCH-type Zn-finger protein [Genera 3e-10
COG5063 351 COG5063, CTH1, CCCH-type Zn-finger protein [Genera 1e-09
smart0035627 smart00356, ZnF_C3H1, zinc finger 5e-07
COG5063351 COG5063, CTH1, CCCH-type Zn-finger protein [Genera 2e-05
smart0035627 smart00356, ZnF_C3H1, zinc finger 2e-04
>gnl|CDD|144294 pfam00642, zf-CCCH, Zinc finger C-x8-C-x5-C-x3-H type (and similar) Back     alignment and domain information 
 Score = 54.5 bits (132), Expect = 2e-10
 Identities = 16/26 (61%), Positives = 19/26 (73%)

Query: 245 FKTELCNKWQETGACPYGDHCQFAHG 270
           +KTELC  +  TG C YGD C+FAHG
Sbjct: 1   YKTELCRFFSRTGTCKYGDRCKFAHG 26

Length = 27
>gnl|CDD|227395 COG5063, CTH1, CCCH-type Zn-finger protein [General function prediction only] Back     alignment and domain information
>gnl|CDD|227395 COG5063, CTH1, CCCH-type Zn-finger protein [General function prediction only] Back     alignment and domain information
>gnl|CDD|214632 smart00356, ZnF_C3H1, zinc finger Back     alignment and domain information
>gnl|CDD|227395 COG5063, CTH1, CCCH-type Zn-finger protein [General function prediction only] Back     alignment and domain information
>gnl|CDD|214632 smart00356, ZnF_C3H1, zinc finger Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 327
KOG1677 332 consensus CCCH-type Zn-finger protein [General fun 99.5
KOG1595 528 consensus CCCH-type Zn-finger protein [General fun 99.18
COG5063351 CTH1 CCCH-type Zn-finger protein [General function 98.84
COG5063351 CTH1 CCCH-type Zn-finger protein [General function 98.64
PF0064227 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and si 98.44
KOG2333 614 consensus Uncharacterized conserved protein [Gener 98.35
KOG1595 528 consensus CCCH-type Zn-finger protein [General fun 98.24
KOG1040 325 consensus Polyadenylation factor I complex, subuni 98.23
PF0064227 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and si 98.21
KOG1677332 consensus CCCH-type Zn-finger protein [General fun 98.16
smart0035627 ZnF_C3H1 zinc finger. 98.0
KOG2494 331 consensus C3H1-type Zn-finger protein [Transcripti 97.75
KOG1763 343 consensus Uncharacterized conserved protein, conta 97.74
smart0035627 ZnF_C3H1 zinc finger. 97.69
COG5252 299 Uncharacterized conserved protein, contains CCCH-t 97.03
COG5084 285 YTH1 Cleavage and polyadenylation specificity fact 96.79
KOG1492377 consensus C3H1-type Zn-finger protein [General fun 96.54
KOG1492377 consensus C3H1-type Zn-finger protein [General fun 96.42
KOG1040 325 consensus Polyadenylation factor I complex, subuni 96.01
KOG2185 486 consensus Predicted RNA-processing protein, contai 95.94
KOG2185 486 consensus Predicted RNA-processing protein, contai 94.97
PF1460819 zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type 94.54
COG5152259 Uncharacterized conserved protein, contains RING a 94.08
COG5084285 YTH1 Cleavage and polyadenylation specificity fact 93.54
PF1460819 zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type 93.33
COG5152259 Uncharacterized conserved protein, contains RING a 93.28
KOG4791 667 consensus Uncharacterized conserved protein [Funct 92.75
KOG4791 667 consensus Uncharacterized conserved protein [Funct 89.8
PF07407 420 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: 89.58
KOG1813313 consensus Predicted E3 ubiquitin ligase [Posttrans 88.08
KOG2494 331 consensus C3H1-type Zn-finger protein [Transcripti 88.05
PF1477560 NYD-SP28_assoc: Sperm tail C-terminal domain 87.11
KOG1813313 consensus Predicted E3 ubiquitin ligase [Posttrans 87.0
KOG1763 343 consensus Uncharacterized conserved protein, conta 86.57
KOG4343 655 consensus bZIP transcription factor ATF6 [Transcri 83.63
PRK00888105 ftsB cell division protein FtsB; Reviewed 82.48
COG4026290 Uncharacterized protein containing TOPRIM domain, 82.33
KOG1039 344 consensus Predicted E3 ubiquitin ligase [Posttrans 82.08
PF1022480 DUF2205: Predicted coiled-coil protein (DUF2205); 82.07
KOG2202260 consensus U2 snRNP splicing factor, small subunit, 81.71
>KOG1677 consensus CCCH-type Zn-finger protein [General function prediction only] Back     alignment and domain information 
Probab=99.50  E-value=1e-14  Score=138.40  Aligned_cols=74  Identities=42%  Similarity=0.943  Sum_probs=66.7

Q ss_pred             ccCCcccccCcccccCCCCCC-CCCCCccccCcccc------cccccCCccccccccccCccccCCCCCCCCCCCCchhh
Q 020338          241 NQGMFKTELCNKWQETGACPY-GDHCQFAHGIEELR------PVIRHPRYKTEVCRMVLAGDVCPYGHRCHFRHALTEQE  313 (327)
Q Consensus       241 n~~k~KTkLCr~f~~~G~C~y-GD~C~FAHd~~Elr------~~~~hp~yKTk~Ck~Fl~gG~CpyG~rCRFaH~~~Elr  313 (327)
                      +...+||.+|.+|...|.|.| |++|+|+|+.++++      ....+++|||++|.+|.+.|.|+||.+|+|.|+..+..
T Consensus       126 ~p~~~kt~lc~~~~~~g~c~y~ge~crfah~~~e~r~~~~~~~~~~~~~~kt~lC~~f~~tG~C~yG~rC~F~H~~~~~~  205 (332)
T KOG1677|consen  126 KPERYKTPLCRSFRKSGTCKYRGEQCRFAHGLEELRLPSSENQVGNPPKYKTKLCPKFQKTGLCKYGSRCRFIHGEPEDR  205 (332)
T ss_pred             CcccccCCcceeeecCccccccCchhhhcCCcccccccccchhhcCCCCCCCcCCCccccCCCCCCCCcCeecCCCcccc
Confidence            456899999999999999999 99999999999998      33467899999999999999999999999999987655


Q ss_pred             h
Q 020338          314 R  314 (327)
Q Consensus       314 k  314 (327)
                      .
T Consensus       206 ~  206 (332)
T KOG1677|consen  206 A  206 (332)
T ss_pred             c
Confidence            4

>KOG1595 consensus CCCH-type Zn-finger protein [General function prediction only] Back     alignment and domain information
>COG5063 CTH1 CCCH-type Zn-finger protein [General function prediction only] Back     alignment and domain information
>COG5063 CTH1 CCCH-type Zn-finger protein [General function prediction only] Back     alignment and domain information
>PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>KOG2333 consensus Uncharacterized conserved protein [General function prediction only] Back     alignment and domain information
>KOG1595 consensus CCCH-type Zn-finger protein [General function prediction only] Back     alignment and domain information
>KOG1040 consensus Polyadenylation factor I complex, subunit, Yth1 (CPSF subunit) [RNA processing and modification] Back     alignment and domain information
>PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>KOG1677 consensus CCCH-type Zn-finger protein [General function prediction only] Back     alignment and domain information
>smart00356 ZnF_C3H1 zinc finger Back     alignment and domain information
>KOG2494 consensus C3H1-type Zn-finger protein [Transcription] Back     alignment and domain information
>KOG1763 consensus Uncharacterized conserved protein, contains CCCH-type Zn-finger [General function prediction only] Back     alignment and domain information
>smart00356 ZnF_C3H1 zinc finger Back     alignment and domain information
>COG5252 Uncharacterized conserved protein, contains CCCH-type Zn-finger protein [General function prediction only] Back     alignment and domain information
>COG5084 YTH1 Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only] Back     alignment and domain information
>KOG1492 consensus C3H1-type Zn-finger protein [General function prediction only] Back     alignment and domain information
>KOG1492 consensus C3H1-type Zn-finger protein [General function prediction only] Back     alignment and domain information
>KOG1040 consensus Polyadenylation factor I complex, subunit, Yth1 (CPSF subunit) [RNA processing and modification] Back     alignment and domain information
>KOG2185 consensus Predicted RNA-processing protein, contains G-patch domain [RNA processing and modification] Back     alignment and domain information
>KOG2185 consensus Predicted RNA-processing protein, contains G-patch domain [RNA processing and modification] Back     alignment and domain information
>PF14608 zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type Back     alignment and domain information
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only] Back     alignment and domain information
>COG5084 YTH1 Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only] Back     alignment and domain information
>PF14608 zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type Back     alignment and domain information
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only] Back     alignment and domain information
>KOG4791 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG4791 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus Back     alignment and domain information
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2494 consensus C3H1-type Zn-finger protein [Transcription] Back     alignment and domain information
>PF14775 NYD-SP28_assoc: Sperm tail C-terminal domain Back     alignment and domain information
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1763 consensus Uncharacterized conserved protein, contains CCCH-type Zn-finger [General function prediction only] Back     alignment and domain information
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription] Back     alignment and domain information
>PRK00888 ftsB cell division protein FtsB; Reviewed Back     alignment and domain information
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only] Back     alignment and domain information
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure Back     alignment and domain information
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query327
1rgo_A70 Structural Basis For Recognition Of The Mrna Class 4e-19
1m9o_A77 Nmr Structure Of The First Zinc Binding Domain Of N 7e-17
>pdb|1RGO|A Chain A, Structural Basis For Recognition Of The Mrna Class Ii Au- Rich Element By The Tandem Zinc Finger Domain Of Tis11d Length = 70 Back     alignment and structure 
Iteration: 1

 Score = 92.0 bits (227), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 38/67 (56%), Positives = 46/67 (68%)
Query: 245 FKTELCNKWQETGACPYGDHCQFAHGIEELRPVIRHPRYKTEVCRMVLAGDVCPYGHRCH 304
           +KTELC  ++E+G C YG+ CQFAHG  ELR + RHP+YKTE+CR       CPYG RCH
Sbjct: 4   YKTELCRPFEESGTCKYGEKCQFAHGFHELRSLTRHPKYKTELCRTFHTIGFCPYGPRCH 63
Query: 305 FRHALTE 311
           F H   E
Sbjct: 64  FIHNADE 70
>pdb|1M9O|A Chain A, Nmr Structure Of The First Zinc Binding Domain Of Nup475TTPTIS11 Length = 77 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query327
1m9o_A77 Tristetraproline; Cys3His type zinc finger, metal 1e-26
1m9o_A77 Tristetraproline; Cys3His type zinc finger, metal 2e-09
1m9o_A77 Tristetraproline; Cys3His type zinc finger, metal 3e-07
2cqe_A98 KIAA1064 protein; CCCH zinc-finger, structural gen 1e-08
2d9n_A77 Cleavage and polyadenylation specificity factor, 3 1e-07
2rhk_C72 Cleavage and polyadenylation specificity factor su 1e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-06
2d9m_A69 Zinc finger CCCH-type domain containing protein 7A 8e-06
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A Length = 77 Back     alignment and structure
 Score = 99.3 bits (247), Expect = 1e-26
 Identities = 38/71 (53%), Positives = 44/71 (61%)

Query: 241 NQGMFKTELCNKWQETGACPYGDHCQFAHGIEELRPVIRHPRYKTEVCRMVLAGDVCPYG 300
               +KTELC  + E+G C YG  CQFAHG+ ELR   RHP+YKTE+C        CPYG
Sbjct: 6   TSSRYKTELCRTYSESGRCRYGAKCQFAHGLGELRQANRHPKYKTELCHKFKLQGRCPYG 65

Query: 301 HRCHFRHALTE 311
            RCHF H  TE
Sbjct: 66  SRCHFIHNPTE 76
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A Length = 77 Back     alignment and structure
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A Length = 77 Back     alignment and structure
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1 Length = 98 Back     alignment and structure
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 77 Back     alignment and structure
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens} Length = 72 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 69 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query327
1m9o_A77 Tristetraproline; Cys3His type zinc finger, metal 99.75
2cqe_A98 KIAA1064 protein; CCCH zinc-finger, structural gen 99.3
2d9n_A77 Cleavage and polyadenylation specificity factor, 3 99.26
2rhk_C72 Cleavage and polyadenylation specificity factor su 99.17
3d2q_A70 Muscleblind-like protein 1; tandem zinc finger dom 99.13
2e5s_A98 Otthump00000018578; ZF-CCCHX2 domain, muscleblind- 98.99
3d2n_A83 Muscleblind-like protein 1; tandem zinc finger dom 98.83
2rpp_A89 Muscleblind-like protein 2; zinc finger domain, C3 98.59
2d9m_A69 Zinc finger CCCH-type domain containing protein 7A 98.31
2d9m_A69 Zinc finger CCCH-type domain containing protein 7A 98.08
1m9o_A77 Tristetraproline; Cys3His type zinc finger, metal 98.05
2d9n_A77 Cleavage and polyadenylation specificity factor, 3 97.2
2cqe_A98 KIAA1064 protein; CCCH zinc-finger, structural gen 96.99
3u9g_A229 Zinc finger CCCH-type antiviral protein 1; zinc fi 96.37
2rhk_C72 Cleavage and polyadenylation specificity factor su 96.34
2fc6_A50 Nuclear, target of EGR1, member 1; structure genom 96.17
2fc6_A50 Nuclear, target of EGR1, member 1; structure genom 96.16
3u9g_A229 Zinc finger CCCH-type antiviral protein 1; zinc fi 95.42
3d2q_A70 Muscleblind-like protein 1; tandem zinc finger dom 95.32
3s9g_A104 Protein hexim1; cyclin T-binding domain (TBD), cyc 94.54
3d2n_A83 Muscleblind-like protein 1; tandem zinc finger dom 94.42
2e5s_A98 Otthump00000018578; ZF-CCCHX2 domain, muscleblind- 94.36
2rpp_A89 Muscleblind-like protein 2; zinc finger domain, C3 92.86
2yy0_A53 C-MYC-binding protein; conserved hypothetical prot 90.97
2lhn_A80 Nuclear polyadenylated RNA-binding protein NAB2; n 90.1
3u1l_A240 PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 89.64
3u1l_A 240 PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 89.64
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A Back     alignment and structure
Probab=99.75  E-value=3.6e-19  Score=135.97  Aligned_cols=71  Identities=54%  Similarity=1.088  Sum_probs=34.3

Q ss_pred             ccCCcccccCcccccCCCCCCCCCCCccccCcccccccccCCccccccccccCccccCCCCCCCCCCCCch
Q 020338          241 NQGMFKTELCNKWQETGACPYGDHCQFAHGIEELRPVIRHPRYKTEVCRMVLAGDVCPYGHRCHFRHALTE  311 (327)
Q Consensus       241 n~~k~KTkLCr~f~~~G~C~yGD~C~FAHd~~Elr~~~~hp~yKTk~Ck~Fl~gG~CpyG~rCRFaH~~~E  311 (327)
                      ...++||++|++|+..|.|++|++|+|+|+..+++.+..++.+++.+|++|...|.|++|.+|+|+|+..|
T Consensus         6 ~~~~~kt~~C~~f~~~G~C~~G~~C~f~H~~~e~~~~~~~~~~k~~~C~~f~~~G~C~~G~~C~f~H~~~e   76 (77)
T 1m9o_A            6 TSSRYKTELCRTYSESGRCRYGAKCQFAHGLGELRQANRHPKYKTELCHKFKLQGRCPYGSRCHFIHNPTE   76 (77)
T ss_dssp             CSSCCCSCCCSGGGGTSCCTTTTTCSSCSSSCCGGGTC---------------------------------
T ss_pred             CCCCccchhCHHhhhCCCcCCCCCccCCCCChhhccccccccccCCcccchhhCcCCCCcCcCCCCCCCCC
Confidence            34579999999998799999999999999999998776678899999998888889999999999999765
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1 Back     alignment and structure
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens} Back     alignment and structure
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A Back     alignment and structure
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens} Back     alignment and structure
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens} Back     alignment and structure
>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A Back     alignment and structure
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1 Back     alignment and structure
>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus} Back     alignment and structure
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens} Back     alignment and structure
>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1 Back     alignment and structure
>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1 Back     alignment and structure
>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus} Back     alignment and structure
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A Back     alignment and structure
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A Back     alignment and structure
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens} Back     alignment and structure
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens} Back     alignment and structure
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens} Back     alignment and structure
>2lhn_A Nuclear polyadenylated RNA-binding protein NAB2; nuclear protein; NMR {Saccharomyces cerevisiae S288C} Back     alignment and structure
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A Back     alignment and structure
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 327
d1rgoa136 g.66.1.1 (A:151-186) Butyrate response factor 2 (T 2e-16
d1rgoa136 g.66.1.1 (A:151-186) Butyrate response factor 2 (T 6e-08
d1m9oa_40 g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475 3e-15
d1m9oa_40 g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475 4e-08
d1rgoa234 g.66.1.1 (A:187-220) Butyrate response factor 2 (T 3e-13
d1rgoa234 g.66.1.1 (A:187-220) Butyrate response factor 2 (T 1e-12
>d1rgoa1 g.66.1.1 (A:151-186) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]} Length = 36 Back     information, alignment and structure

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.7 bits (171), Expect = 2e-16
 Identities = 19/34 (55%), Positives = 25/34 (73%)

Query: 244 MFKTELCNKWQETGACPYGDHCQFAHGIEELRPV 277
            +KTELC  ++E+G C YG+ CQFAHG  ELR +
Sbjct: 3   RYKTELCRPFEESGTCKYGEKCQFAHGFHELRSL 36
>d1rgoa1 g.66.1.1 (A:151-186) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]} Length = 36 Back     information, alignment and structure
>d1m9oa_ g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475) {Mouse (Mus musculus) [TaxId: 10090]} Length = 40 Back     information, alignment and structure
>d1m9oa_ g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475) {Mouse (Mus musculus) [TaxId: 10090]} Length = 40 Back     information, alignment and structure
>d1rgoa2 g.66.1.1 (A:187-220) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]} Length = 34 Back     information, alignment and structure
>d1rgoa2 g.66.1.1 (A:187-220) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]} Length = 34 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query327
d1m9oa_40 Tristetraproline (ttp, tis11, nup475) {Mouse (Mus 99.14
d1rgoa136 Butyrate response factor 2 (Tis11D) {Human (Homo s 99.12
d1rgoa234 Butyrate response factor 2 (Tis11D) {Human (Homo s 99.0
d1rgoa234 Butyrate response factor 2 (Tis11D) {Human (Homo s 98.97
d1m9oa_40 Tristetraproline (ttp, tis11, nup475) {Mouse (Mus 98.91
d1rgoa136 Butyrate response factor 2 (Tis11D) {Human (Homo s 98.82
d2cqea229 Zinc finger CCCH domain-containing protein C19orf7 97.3
d2cqea229 Zinc finger CCCH domain-containing protein C19orf7 97.03
d2cqea156 Zinc finger CCCH domain-containing protein C19orf7 96.5
d2cqea156 Zinc finger CCCH domain-containing protein C19orf7 95.1
d2fc6a137 Target of EGR1 protein 1, TOE1 {Human (Homo sapien 94.25
d2fc6a137 Target of EGR1 protein 1, TOE1 {Human (Homo sapien 89.68
>d1m9oa_ g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Tristetraproline (ttp, tis11, nup475)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.14  E-value=9.5e-12  Score=85.04  Aligned_cols=35  Identities=54%  Similarity=1.143  Sum_probs=31.0

Q ss_pred             cCCcccccCcccccCCCCCCCCCCCccccCccccc
Q 020338          242 QGMFKTELCNKWQETGACPYGDHCQFAHGIEELRP  276 (327)
Q Consensus       242 ~~k~KTkLCr~f~~~G~C~yGD~C~FAHd~~Elr~  276 (327)
                      ..+|||++|++|...|.|+||++|+|+|+.+||+.
T Consensus         4 ~~~yKT~lC~~~~~~g~C~~G~~C~FAHg~~ELr~   38 (40)
T d1m9oa_           4 SSRYKTELCRTYSESGRCRYGAKCQFAHGLGELRQ   38 (40)
T ss_dssp             SSCCCSCCCSGGGGTSCCTTTTTCSSCSSSCCGGG
T ss_pred             CCccccccChhhhcCCcCCCCCCCCCCCCHHHhcC
Confidence            45799999999988899999999999999999975
>d1rgoa1 g.66.1.1 (A:151-186) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1rgoa2 g.66.1.1 (A:187-220) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1rgoa2 g.66.1.1 (A:187-220) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1m9oa_ g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1rgoa1 g.66.1.1 (A:151-186) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cqea2 g.66.1.1 (A:429-457) Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cqea2 g.66.1.1 (A:429-457) Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cqea1 g.66.1.1 (A:458-513) Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cqea1 g.66.1.1 (A:458-513) Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2fc6a1 g.66.1.1 (A:8-44) Target of EGR1 protein 1, TOE1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2fc6a1 g.66.1.1 (A:8-44) Target of EGR1 protein 1, TOE1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure