Citrus Sinensis ID: 020346
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 327 | 2.2.26 [Sep-21-2011] | |||||||
| Q3MG79 | 370 | Putative ribosome biogene | yes | no | 0.795 | 0.702 | 0.468 | 5e-69 | |
| Q8YUA3 | 370 | Putative ribosome biogene | yes | no | 0.785 | 0.694 | 0.466 | 1e-67 | |
| B0JW21 | 358 | Putative ribosome biogene | yes | no | 0.813 | 0.743 | 0.445 | 1e-65 | |
| Q8DK79 | 348 | Putative ribosome biogene | yes | no | 0.792 | 0.744 | 0.421 | 5e-58 | |
| P52640 | 369 | Putative ribosome biogene | N/A | no | 0.801 | 0.710 | 0.411 | 2e-56 | |
| Q7VEJ4 | 309 | Putative ribosome biogene | yes | no | 0.788 | 0.834 | 0.389 | 7e-50 | |
| Q0IE58 | 304 | Putative ribosome biogene | yes | no | 0.788 | 0.848 | 0.4 | 4e-48 | |
| Q3ANM7 | 304 | Putative ribosome biogene | yes | no | 0.785 | 0.845 | 0.404 | 2e-46 | |
| Q7UA74 | 299 | Putative ribosome biogene | yes | no | 0.785 | 0.859 | 0.394 | 1e-45 | |
| Q46I43 | 312 | Putative ribosome biogene | yes | no | 0.795 | 0.833 | 0.365 | 1e-44 |
| >sp|Q3MG79|RSGA_ANAVT Putative ribosome biogenesis GTPase RsgA OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=rsgA PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 261 bits (667), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 134/286 (46%), Positives = 176/286 (61%), Gaps = 26/286 (9%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R LKKI ++V+VGD+VVV DW RG I V R T++ PP+AN D +LL+F+
Sbjct: 57 CTRRTRLKKIGQQVMVGDRVVVEEPDWAGGRGAIAEVLSRQTQLDRPPIANADQILLVFA 116
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+ P LEP+ L+RFLV+AE+TG+ + L LNK +LV E+ RL WGY+PLF SVE
Sbjct: 117 VADPPLEPYQLSRFLVKAETTGLDVVLCLNKSDLVSPEIQQQISDRLLAWGYQPLFISVE 176
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
++ +D + + L ++ TV+ GPSGVGKSSLINAL D+
Sbjct: 177 KQINIDQIAKYLSNKITVVAGPSGVGKSSLINAL--------IPDI-------------- 214
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKE 265
+ RVGEVS K RG+HTTRHV L L GG LADTPGFNQP + + + L FPE +E
Sbjct: 215 NLRVGEVSGKLARGRHTTRHVELFELPNGGLLADTPGFNQPD-VDCSPEELVHYFPEARE 273
Query: 266 MLKANEPAKCSFNNCLHLGEPGCVVKGDWERYQYYFQLLDEIRIRE 311
L A C FN+CLH EP C V+GDWERY++Y + L + R+
Sbjct: 274 RLAV---ASCRFNDCLHRDEPDCAVRGDWERYEHYLEFLADAIARQ 316
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May play a role in 30S ribosomal subunit biogenesis. Unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. Anabaena variabilis (strain ATCC 29413 / PCC 7937) (taxid: 240292) EC: 3EC: .EC: 6EC: .EC: 1EC: .EC: - |
| >sp|Q8YUA3|RSGA1_NOSS1 Putative ribosome biogenesis GTPase RsgA 1 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=rsgA1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 256 bits (655), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 132/283 (46%), Positives = 176/283 (62%), Gaps = 26/283 (9%)
Query: 29 RALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQ 88
R LKKI ++V+VGD+VVV DW RG I +V R T++ PP+AN D +LL+F++
Sbjct: 60 RTRLKKIGQQVMVGDRVVVEEPDWAGGRGAIADVLSRQTQLDRPPIANADQILLVFAVAD 119
Query: 89 PKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVESKL 148
P LEP+ L+RFLV+AE+TG+ + L LNK +LV E+ RL WGY+PLF SVE+++
Sbjct: 120 PPLEPYQLSRFLVKAETTGLDVVLCLNKSDLVSPEIQQQISDRLLAWGYQPLFISVENQI 179
Query: 149 GLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQR 208
+D + + L ++ TV+ GPSGVGKSSLINAL + N + R
Sbjct: 180 NIDQIAKYLSNKITVVAGPSGVGKSSLINAL-----------IPNI-----------NLR 217
Query: 209 VGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLK 268
VGEVS K RG+HTTRHV L L GG LADTPGFNQP + + + L FPE +E L
Sbjct: 218 VGEVSGKLARGRHTTRHVELFELPNGGLLADTPGFNQPD-VDCSPEELVHYFPEARERLA 276
Query: 269 ANEPAKCSFNNCLHLGEPGCVVKGDWERYQYYFQLLDEIRIRE 311
A C FN+C H EP C V+GDWERY++Y + L + R+
Sbjct: 277 I---ASCRFNDCSHRDEPDCAVRGDWERYEHYLEFLADAIARQ 316
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May play a role in 30S ribosomal subunit biogenesis. Unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690) EC: 3 EC: . EC: 6 EC: . EC: 1 EC: . EC: - |
| >sp|B0JW21|RSGA_MICAN Putative ribosome biogenesis GTPase RsgA OS=Microcystis aeruginosa (strain NIES-843) GN=rsgA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 250 bits (638), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 130/292 (44%), Positives = 179/292 (61%), Gaps = 26/292 (8%)
Query: 21 GVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHL 80
G LLC RA L+KI + V+VGD+V V ++ D++G I V RSTEI P VAN++ +
Sbjct: 31 GENLLCTRRARLQKIGQSVMVGDRVRVEEANFGDQQGAIAEVLPRSTEIDRPAVANIEQI 90
Query: 81 LLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPL 140
LL+F++ +P L+P+ ++RFLV+AESTG+ + + +NK++L + E + W RL WGY P
Sbjct: 91 LLVFALAEPVLDPWLISRFLVKAESTGLEIAVCVNKIDLGEPEQIEVWGDRLAGWGYRPF 150
Query: 141 FCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILG 200
F SVE G ++LL +L + T++ GPSGVGKSSLIN L P
Sbjct: 151 FVSVEKNRGFEALLAQLNHKITLLAGPSGVGKSSLINCL--IPEI--------------- 193
Query: 201 SKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTF 260
+QRVG+VS K +G+HTTRHV L L G LAD+PGFNQP + + L F
Sbjct: 194 -----NQRVGDVSGKLQKGRHTTRHVQLFALPNRGLLADSPGFNQPDI-NCLPEELTFYF 247
Query: 261 PEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWERYQYYFQLLDEIRIREE 312
PE++ L C FN+C H EP CVV+GDWERYQ+Y + L+E RE+
Sbjct: 248 PEVRARLAL---GNCQFNDCTHRREPNCVVRGDWERYQHYLEFLEEAIAREQ 296
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May play a role in 30S ribosomal subunit biogenesis. Unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. Microcystis aeruginosa (strain NIES-843) (taxid: 449447) EC: 3 EC: . EC: 6 EC: . EC: 1 EC: . EC: - |
| >sp|Q8DK79|RSGA_THEEB Putative ribosome biogenesis GTPase RsgA OS=Thermosynechococcus elongatus (strain BP-1) GN=rsgA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 224 bits (572), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 120/285 (42%), Positives = 161/285 (56%), Gaps = 26/285 (9%)
Query: 23 ELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLL 82
ELLCV RA LKK+ ++V VGD VVV DW +RG I + R ++ P +ANVD +LL
Sbjct: 29 ELLCVRRARLKKMGQQVCVGDWVVVSHPDWPGQRGAIAEILPRRNQLSRPAIANVDQILL 88
Query: 83 LFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFC 142
LF++ P + +TRFL+ AE + + + K +LV + W+ RL WGY
Sbjct: 89 LFALADPPADVHPITRFLLTAEGLNVEIQVVFTKADLVSPQEQQQWRDRLQQWGYRCHVL 148
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
S+ + +L L ++ TV+ GPSGVGKSSLI L
Sbjct: 149 SLTQGIAWQALRPHLANKITVVCGPSGVGKSSLIRHLTPR-------------------- 188
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
ED RVG VS RG+HTTRHV L PL+ GG++ADTPGFNQP L +Q LA FPE
Sbjct: 189 --EDIRVGAVSDHWHRGRHTTRHVELFPLAEGGWIADTPGFNQPELPPDPRQ-LAAAFPE 245
Query: 263 IKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWERYQYYFQLLDEI 307
I++ L ++ C F+NC H EPGC V+G+WERY Y + L ++
Sbjct: 246 IRQRLSQDQ---CLFDNCRHDQEPGCCVRGNWERYPLYIEYLHQL 287
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May play a role in 30S ribosomal subunit biogenesis. Unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. Thermosynechococcus elongatus (strain BP-1) (taxid: 197221) EC: 3 EC: . EC: 6 EC: . EC: 1 EC: . EC: - |
| >sp|P52640|RSGA_SYNY3 Putative ribosome biogenesis GTPase RsgA OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=rsgA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 219 bits (558), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 125/304 (41%), Positives = 170/304 (55%), Gaps = 42/304 (13%)
Query: 20 TGVELLCVVRALLKKIKRRVLVGDKVVV--------------GSIDWVDRR--GMIENVF 63
T LLC R LKK+ ++V+VGD+V V + V G I V+
Sbjct: 26 TSQPLLCTRRTRLKKVGQKVMVGDQVRVELPPSLLLHGRSNTAPVPMVAEGDLGAIAKVY 85
Query: 64 QRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEE 123
R T + PPVAN + + L+F++ P LE + L+RFLV+AE+TG+ ++L NK +LV E
Sbjct: 86 PRRTVLERPPVANAEQICLVFALTDPPLEEWQLSRFLVQAEATGLEISLCFNKQDLVQET 145
Query: 124 VLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSP 183
+ W RL WGY P+ SVE++ G++ L ++LR + +++ GPSGVGKSSLIN L
Sbjct: 146 DVKFWGDRLAAWGYAPIIISVENRWGVEKLQEKLRSRISLMAGPSGVGKSSLINLL---- 201
Query: 184 HASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGF 243
+ G +Q+V VS K +G+HTTRHV L L GG LADTPGF
Sbjct: 202 --------------VPGV----EQQVKNVSGKLRKGRHTTRHVELFDLPHGGLLADTPGF 243
Query: 244 NQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWERYQYYFQL 303
NQP L V L FPE ++ L E C F +CLH GEP C V DWERY++Y
Sbjct: 244 NQPD-LAVEPAQLIHLFPEARQQLTGQE---CFFKDCLHRGEPDCAVGQDWERYEHYLTF 299
Query: 304 LDEI 307
L+E+
Sbjct: 300 LEEV 303
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May play a role in 30S ribosomal subunit biogenesis. Unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708) EC: 3 EC: . EC: 6 EC: . EC: 1 EC: . EC: - |
| >sp|Q7VEJ4|RSGA_PROMA Putative ribosome biogenesis GTPase RsgA OS=Prochlorococcus marinus (strain SARG / CCMP1375 / SS120) GN=rsgA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 197 bits (502), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 111/285 (38%), Positives = 157/285 (55%), Gaps = 27/285 (9%)
Query: 24 LLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLL 83
LLC R+ L V VGD V++ +IDW G+I V R I PPVANV ++++
Sbjct: 46 LLCTKRSRLSYKGHSVSVGDFVLIEAIDWTAETGVISFVEPRKNLITRPPVANVTDVIIV 105
Query: 84 FSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCS 143
S+ P + ++RFL++AE TG+ +T+ L K +L+DE++L + +L TWGY+P+ S
Sbjct: 106 VSLLDPSFDLNQVSRFLMKAEETGLKVTIVLTKRDLIDEKILEKYDKKLQTWGYQPIPIS 165
Query: 144 VESKLGLDSLLQRLRD-QTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
+ + G+ L RL+ + V+ GPSGVGKSSLIN L P S
Sbjct: 166 IVNGEGIQKLSARLKSMKLGVLCGPSGVGKSSLINYLL--PKISIP-------------- 209
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+G++S K RG+HTTRHV L + ++ADTPGFN+P Q + Q FPE
Sbjct: 210 ------IGKLSKKLKRGRHTTRHVELFSIYSDSFIADTPGFNKPEFYTEPSQ-VPQLFPE 262
Query: 263 IKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWERYQYYFQLLDEI 307
++ L KC F NC+HL EP C + DWERY Y L E+
Sbjct: 263 LRSQLLIK---KCKFRNCMHLNEPDCAISRDWERYSNYKNFLQEM 304
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May play a role in 30S ribosomal subunit biogenesis. Unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. Prochlorococcus marinus (strain SARG / CCMP1375 / SS120) (taxid: 167539) EC: 3 EC: . EC: 6 EC: . EC: 1 EC: . EC: - |
| >sp|Q0IE58|RSGA_SYNS3 Putative ribosome biogenesis GTPase RsgA OS=Synechococcus sp. (strain CC9311) GN=rsgA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 192 bits (487), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 114/285 (40%), Positives = 157/285 (55%), Gaps = 27/285 (9%)
Query: 24 LLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLL 83
LLC R L V VGD+V V +ID R ++ +V R + + PPVAN +++
Sbjct: 36 LLCTRRTRLSHRGEAVYVGDRVRVEAIDVSHARAVVADVEPRVSFLTRPPVANASTVVVA 95
Query: 84 FSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCS 143
++DQP +P +RFL+ AE T + + L L K +L++ E L + RL WGY PL S
Sbjct: 96 LAVDQPAFDPDQASRFLLTAERTSLAVQLVLTKTDLLEPEALERLRVRLQAWGYPPLLVS 155
Query: 144 VESKLGLDSLLQRLRDQT-TVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
S LGL L QRL + + +V+ GPSGVGKSSL+NAL P L
Sbjct: 156 TFSGLGLSELKQRLAESSLSVLCGPSGVGKSSLLNAL----------------IPEL--- 196
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
D R+G VS + RG+HTTRHV L L +ADTPGFN+P L ++L FPE
Sbjct: 197 ---DLRIGSVSGRLQRGRHTTRHVELHHLGAKARVADTPGFNRPDLPD-DPRNLEVLFPE 252
Query: 263 IKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWERYQYYFQLLDEI 307
++ L+ + C F +CLH EPGC V DWERY Y + ++++
Sbjct: 253 LRVQLEQH---PCRFRDCLHRDEPGCGVTRDWERYPIYRRAVEDL 294
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May play a role in 30S ribosomal subunit biogenesis. Unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. Synechococcus sp. (strain CC9311) (taxid: 64471) EC: 3 EC: . EC: 6 EC: . EC: 1 EC: . EC: - |
| >sp|Q3ANM7|RSGA_SYNSC Putative ribosome biogenesis GTPase RsgA OS=Synechococcus sp. (strain CC9605) GN=rsgA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 186 bits (471), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 115/284 (40%), Positives = 153/284 (53%), Gaps = 27/284 (9%)
Query: 24 LLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLL 83
LLC R L V VGD+V V +ID R ++ V R + + PPVANV + ++
Sbjct: 36 LLCTRRTRLSHRGEAVYVGDRVRVEAIDPGQGRAVVAEVEPRHSFLTRPPVANVSLVAVV 95
Query: 84 FSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCS 143
+++QP +P +RFL+ AE TG+ + L L K +L+ L +RL WGY+PL S
Sbjct: 96 LAVEQPSFDPDQASRFLLTAERTGLEVILLLTKTDLLSAAALERLVTRLQGWGYDPLAFS 155
Query: 144 VESKLGLDSLLQRLRD-QTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
+ G+D+L QRL Q +V+ GPSGVGKSSL+N L D+
Sbjct: 156 SAAGTGIDALRQRLAGAQLSVLCGPSGVGKSSLLNQL--------CPDL----------- 196
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
R VS + RG+HTTRHV L PL +ADTPGFN+P L + Q L FPE
Sbjct: 197 ---QLRTAAVSGRLQRGRHTTRHVELFPLGPSARVADTPGFNRPDLPE-DPQELGVLFPE 252
Query: 263 IKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWERYQYYFQLLDE 306
+++ L +P C F +CLH GEPGC V DWERY Y L E
Sbjct: 253 LRKQL---DPWPCRFRDCLHRGEPGCGVSTDWERYSLYEAALIE 293
|
May play a role in 30S ribosomal subunit biogenesis. Unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. Synechococcus sp. (strain CC9605) (taxid: 110662) EC: 3 EC: . EC: 6 EC: . EC: 1 EC: . EC: - |
| >sp|Q7UA74|RSGA_SYNPX Putative ribosome biogenesis GTPase RsgA OS=Synechococcus sp. (strain WH8102) GN=rsgA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 184 bits (466), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 112/284 (39%), Positives = 156/284 (54%), Gaps = 27/284 (9%)
Query: 24 LLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLL 83
LLC R L V VGD+V V +ID V R ++ V R + + P VANV +++
Sbjct: 31 LLCTRRTRLSHRGETVHVGDRVRVEAIDPVQARAVVSGVEPRCSWLTRPQVANVSLVVVA 90
Query: 84 FSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCS 143
++DQP +P +RFL+ AE TG+P+ L L K +L++E RL WGY+ L S
Sbjct: 91 LAVDQPAFDPDQASRFLLTAERTGLPVQLLLTKGDLMEEHQRFALVERLMGWGYDSLVVS 150
Query: 144 VESKLGLDSLLQRLRD-QTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
++ G++ L QRL+D + V+ GPSGVGKSS++N L PH +
Sbjct: 151 SQTGEGVEVLSQRLKDTELAVLCGPSGVGKSSVLNCL--MPHLA---------------- 192
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
RVG VS + RG+HTTRHV L P++ G +ADTPGFN+P L L FPE
Sbjct: 193 ----LRVGAVSGRLQRGRHTTRHVELFPIAPGSRVADTPGFNRPDLPD-DPSELGMLFPE 247
Query: 263 IKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWERYQYYFQLLDE 306
++ L P C F +CLH EPGC + +WER+++Y L E
Sbjct: 248 LRVQLS---PWPCRFRDCLHRQEPGCGINREWERFEFYKDALQE 288
|
May play a role in 30S ribosomal subunit biogenesis. Unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. Synechococcus sp. (strain WH8102) (taxid: 84588) EC: 3 EC: . EC: 6 EC: . EC: 1 EC: . EC: - |
| >sp|Q46I43|RSGA_PROMT Putative ribosome biogenesis GTPase RsgA OS=Prochlorococcus marinus (strain NATL2A) GN=rsgA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 180 bits (457), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 105/287 (36%), Positives = 156/287 (54%), Gaps = 27/287 (9%)
Query: 22 VELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLL 81
+ LLC+ R+ L + VGD V V SID+ ++R ++ +V R + + P VANV +
Sbjct: 42 IRLLCIRRSKLNYQGLFIDVGDIVCVESIDYKNKRAVVSDVEPRQSFLKRPAVANVTLVS 101
Query: 82 LLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLF 141
+ S D+P + +RFL+ AE I + L K++L+ + L + ++ +WGY+ +
Sbjct: 102 ICISADEPLFDMEQTSRFLLTAECANIEPLIILTKIDLITKNDLILYINKFKSWGYDCIP 161
Query: 142 CSVESKLGLDSLLQRLRD-QTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILG 200
S+ + G+DSL++RLR + TV+ GPSGVGK+SLIN L + ++
Sbjct: 162 VSIHNSQGIDSLIERLRKTKLTVLAGPSGVGKTSLINHLIPTVSLPTSS----------- 210
Query: 201 SKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTF 260
VS K RG HTTRHV L + G LADTPGFN+P ++ A F
Sbjct: 211 -----------VSKKLKRGTHTTRHVELFAIGNGSLLADTPGFNRPEIV-CEPSDFAFLF 258
Query: 261 PEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWERYQYYFQLLDEI 307
PE + L ++C F NCLH EPGCV+ D ERY +Y Q L+E+
Sbjct: 259 PEFRTQLSN---SQCKFRNCLHRDEPGCVIDKDLERYPFYRQNLEEM 302
|
May play a role in 30S ribosomal subunit biogenesis. Unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. Prochlorococcus marinus (strain NATL2A) (taxid: 59920) EC: 3 EC: . EC: 6 EC: . EC: 1 EC: . EC: - |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 327 | ||||||
| 449452897 | 504 | PREDICTED: putative ribosome biogenesis | 1.0 | 0.648 | 0.801 | 1e-160 | |
| 255547744 | 500 | GTP binding protein, putative [Ricinus c | 1.0 | 0.654 | 0.819 | 1e-159 | |
| 357463041 | 471 | hypothetical protein MTR_3g085550 [Medic | 0.996 | 0.692 | 0.807 | 1e-157 | |
| 356540154 | 475 | PREDICTED: putative ribosome biogenesis | 0.978 | 0.673 | 0.823 | 1e-154 | |
| 356566415 | 473 | PREDICTED: putative ribosome biogenesis | 0.978 | 0.676 | 0.814 | 1e-153 | |
| 224137508 | 385 | predicted protein [Populus trichocarpa] | 0.990 | 0.841 | 0.790 | 1e-151 | |
| 225425472 | 491 | PREDICTED: putative ribosome biogenesis | 0.944 | 0.629 | 0.807 | 1e-145 | |
| 297738426 | 400 | unnamed protein product [Vitis vinifera] | 0.944 | 0.772 | 0.807 | 1e-144 | |
| 42563017 | 433 | Minichromosome maintenance (MCM2/3/5) pr | 0.987 | 0.745 | 0.769 | 1e-142 | |
| 3176667 | 450 | Similar to hypothetical 41.9KD protein g | 0.987 | 0.717 | 0.731 | 1e-139 |
| >gi|449452897|ref|XP_004144195.1| PREDICTED: putative ribosome biogenesis GTPase RsgA-like [Cucumis sativus] gi|449489232|ref|XP_004158254.1| PREDICTED: putative ribosome biogenesis GTPase RsgA-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 570 bits (1468), Expect = e-160, Method: Compositional matrix adjust.
Identities = 275/343 (80%), Positives = 300/343 (87%), Gaps = 16/343 (4%)
Query: 1 MRVIVQQSEPSRTSDCNDKT----------------GVELLCVVRALLKKIKRRVLVGDK 44
MRVIVQ + ND GVELLCVV+A+LKKIKRRVLVGDK
Sbjct: 102 MRVIVQTLPSQFSQSPNDDLERSGSLEDDSSKSSMLGVELLCVVKAVLKKIKRRVLVGDK 161
Query: 45 VVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE 104
VVVGSIDWVDRRGMIENVFQRS+EILDPPVANVDHLL+LFSMDQP+LEPF LTRFLVEAE
Sbjct: 162 VVVGSIDWVDRRGMIENVFQRSSEILDPPVANVDHLLVLFSMDQPRLEPFTLTRFLVEAE 221
Query: 105 STGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVI 164
STGIPLTL LNK+ELVDEE L +WKSRL +WGY+PLFCSV++ GLDSL LRDQTTVI
Sbjct: 222 STGIPLTLGLNKLELVDEETLVSWKSRLRSWGYDPLFCSVQTGAGLDSLAFILRDQTTVI 281
Query: 165 VGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTR 224
VGPSGVGKSSLINALR+S A+DA+D DNWF+PILGSKWFE+QRV EVST+SGRGKHTTR
Sbjct: 282 VGPSGVGKSSLINALRNSNRATDASDTDNWFDPILGSKWFEEQRVAEVSTRSGRGKHTTR 341
Query: 225 HVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLG 284
HVSLLPLSGGGYLADTPGFNQPSL+K+TKQSLAQ FPEI++ML A+EPAKCSFN+CLHLG
Sbjct: 342 HVSLLPLSGGGYLADTPGFNQPSLMKITKQSLAQAFPEIQKMLHASEPAKCSFNDCLHLG 401
Query: 285 EPGCVVKGDWERYQYYFQLLDEIRIREEFQLRTFGTKREGDVR 327
EPGCV+KGDWERYQYYFQLLDEIRIREEFQLRTFGTKREGDVR
Sbjct: 402 EPGCVIKGDWERYQYYFQLLDEIRIREEFQLRTFGTKREGDVR 444
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255547744|ref|XP_002514929.1| GTP binding protein, putative [Ricinus communis] gi|223545980|gb|EEF47483.1| GTP binding protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 567 bits (1462), Expect = e-159, Method: Compositional matrix adjust.
Identities = 273/333 (81%), Positives = 300/333 (90%), Gaps = 6/333 (1%)
Query: 1 MRVIVQQSEPSRTS------DCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVD 54
MRVI+Q PS + + + + GVELLCVVRA+LKKI+RRVLVGDKVVVGSIDWVD
Sbjct: 106 MRVIIQSLPPSSGTFLKSPEEEDSRIGVELLCVVRAVLKKIRRRVLVGDKVVVGSIDWVD 165
Query: 55 RRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLAL 114
RRGMIENVFQRSTEILDPPVANVDHLL+LFSMDQPK+EPFALTRFLVEAESTGIPLTLAL
Sbjct: 166 RRGMIENVFQRSTEILDPPVANVDHLLVLFSMDQPKIEPFALTRFLVEAESTGIPLTLAL 225
Query: 115 NKVELVDEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSS 174
NK ELVDEE L WKSRL +WGYEPLFCSVESKLGLDSL LR+QTTVIVGPSGVGKSS
Sbjct: 226 NKSELVDEETLIAWKSRLRSWGYEPLFCSVESKLGLDSLAYILREQTTVIVGPSGVGKSS 285
Query: 175 LINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGG 234
LINALR+ P A D A+ DNWF+P+LGSKWFE+QRVGEVST+SGRGKHTTR+VSLLPLS G
Sbjct: 286 LINALRNKPRACDVAENDNWFDPMLGSKWFEEQRVGEVSTRSGRGKHTTRNVSLLPLSAG 345
Query: 235 GYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDW 294
GYLADTPGFNQPSLLKVTKQSLA+TFPEI++ML + PAKCSFN+CLHLGEPGC+V GDW
Sbjct: 346 GYLADTPGFNQPSLLKVTKQSLAETFPEIQKMLSSGGPAKCSFNDCLHLGEPGCIVNGDW 405
Query: 295 ERYQYYFQLLDEIRIREEFQLRTFGTKREGDVR 327
ERY +YFQLLDEIRIREEFQLRT+GTK+EGDVR
Sbjct: 406 ERYSFYFQLLDEIRIREEFQLRTYGTKKEGDVR 438
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357463041|ref|XP_003601802.1| hypothetical protein MTR_3g085550 [Medicago truncatula] gi|355490850|gb|AES72053.1| hypothetical protein MTR_3g085550 [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 560 bits (1444), Expect = e-157, Method: Compositional matrix adjust.
Identities = 265/328 (80%), Positives = 295/328 (89%), Gaps = 2/328 (0%)
Query: 1 MRVIVQQSEPSRT-SDCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMI 59
MRVIVQ S+PS T D + + G ELLCVVRALLKKIKRRV+VGDKV+VGS+DWVDRR MI
Sbjct: 86 MRVIVQ-SQPSGTFQDASSRGGAELLCVVRALLKKIKRRVMVGDKVLVGSVDWVDRRAMI 144
Query: 60 ENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVEL 119
ENVFQR++E+LDPPVANVDHLL+LFS+DQPKLEPF LTRFLVEAESTGIPLTLALNK EL
Sbjct: 145 ENVFQRNSEMLDPPVANVDHLLVLFSLDQPKLEPFTLTRFLVEAESTGIPLTLALNKTEL 204
Query: 120 VDEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINAL 179
VD+E +++WK+R WGY+P+FCSVES +D L +LRDQTTV+VGPSGVGKSSLINAL
Sbjct: 205 VDKETMDSWKARFRGWGYQPIFCSVESGHNIDLLAFQLRDQTTVVVGPSGVGKSSLINAL 264
Query: 180 RSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLAD 239
RS+P D AD +NWFEPILGSKW++DQRV EVST+SGRGKHTTRHVSLLPLSGGGYLAD
Sbjct: 265 RSNPRTCDTADGENWFEPILGSKWYDDQRVAEVSTRSGRGKHTTRHVSLLPLSGGGYLAD 324
Query: 240 TPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWERYQY 299
TPGFNQPSLLKVTKQSLAQTFPEI++ML NE KCSFNNCLHLGEPGC+VKGDWERY +
Sbjct: 325 TPGFNQPSLLKVTKQSLAQTFPEIRKMLSGNESTKCSFNNCLHLGEPGCIVKGDWERYSF 384
Query: 300 YFQLLDEIRIREEFQLRTFGTKREGDVR 327
YFQLLDEIRIREEFQLRTFGTKRE DVR
Sbjct: 385 YFQLLDEIRIREEFQLRTFGTKRESDVR 412
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356540154|ref|XP_003538555.1| PREDICTED: putative ribosome biogenesis GTPase RsgA-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 552 bits (1422), Expect = e-154, Method: Compositional matrix adjust.
Identities = 270/328 (82%), Positives = 294/328 (89%), Gaps = 8/328 (2%)
Query: 1 MRVIV-QQSEPSRTSDCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMI 59
MRVIV + EPS GVE+LCVVRALLKKIKRRV+VGDKV+VGSIDWVDRRGMI
Sbjct: 97 MRVIVPENDEPS-----GSFRGVEILCVVRALLKKIKRRVMVGDKVLVGSIDWVDRRGMI 151
Query: 60 ENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVEL 119
ENVFQR++EILDPPVANVD LL+LFS++ PK EPF LTRFLVEAESTGIPL LALNK EL
Sbjct: 152 ENVFQRTSEILDPPVANVDQLLVLFSLEHPKPEPFTLTRFLVEAESTGIPLMLALNKTEL 211
Query: 120 VDEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINAL 179
VD E++++WK+RL +WGYEP+FCSVES GLD L +LRDQTTVIVGPSGVGKSSLINAL
Sbjct: 212 VDNEIISSWKARLRSWGYEPVFCSVESGHGLDLLGYKLRDQTTVIVGPSGVGKSSLINAL 271
Query: 180 RSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLAD 239
RS+P SDAA+ DNWFEPILGSKW EDQRVGEVST+SGRGKHTTRHVSLLPLS GG+LAD
Sbjct: 272 RSNP--SDAAEGDNWFEPILGSKWLEDQRVGEVSTRSGRGKHTTRHVSLLPLSEGGFLAD 329
Query: 240 TPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWERYQY 299
TPGFNQPSLLKVTKQSLAQTFPEI++ML ANE KCSFNNCLHLGEPGC+VKGDWERY Y
Sbjct: 330 TPGFNQPSLLKVTKQSLAQTFPEIRKMLSANETEKCSFNNCLHLGEPGCIVKGDWERYSY 389
Query: 300 YFQLLDEIRIREEFQLRTFGTKREGDVR 327
YFQLLDEIRIREEFQLRTFGTKREGDVR
Sbjct: 390 YFQLLDEIRIREEFQLRTFGTKREGDVR 417
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356566415|ref|XP_003551427.1| PREDICTED: putative ribosome biogenesis GTPase RsgA-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 547 bits (1410), Expect = e-153, Method: Compositional matrix adjust.
Identities = 267/328 (81%), Positives = 295/328 (89%), Gaps = 8/328 (2%)
Query: 1 MRVIV-QQSEPSRTSDCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMI 59
MRVIV + EPS GVE+LCVVRALLKKIKRRV+VGDKV+VGSIDWVDRRGMI
Sbjct: 93 MRVIVPENDEPS-----GSFRGVEILCVVRALLKKIKRRVMVGDKVLVGSIDWVDRRGMI 147
Query: 60 ENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVEL 119
ENVF R++EILDPPVANVD LL+LFS++QPK EPF LTRFLVEAESTGIPLTLALNK EL
Sbjct: 148 ENVFHRTSEILDPPVANVDQLLVLFSLEQPKPEPFTLTRFLVEAESTGIPLTLALNKTEL 207
Query: 120 VDEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINAL 179
VD E++++WK+RL +WGYEP+FCSVES GLD L +LRDQTTVIVGPSGVGKSSLINAL
Sbjct: 208 VDNEIISSWKARLRSWGYEPVFCSVESGHGLDLLGFKLRDQTTVIVGPSGVGKSSLINAL 267
Query: 180 RSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLAD 239
RS+P S+AA+ +NWFEP+LGSKW EDQRVGEVST+SGRGKHTTRHVSLLPLS GG+LAD
Sbjct: 268 RSNP--SNAAEGENWFEPVLGSKWLEDQRVGEVSTRSGRGKHTTRHVSLLPLSEGGFLAD 325
Query: 240 TPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWERYQY 299
TPGFNQPSLLKVTKQSLAQTFPEI++ML A+E KCSFNNCLHLGEPGC+VKGDWERY Y
Sbjct: 326 TPGFNQPSLLKVTKQSLAQTFPEIRKMLSASEIEKCSFNNCLHLGEPGCIVKGDWERYSY 385
Query: 300 YFQLLDEIRIREEFQLRTFGTKREGDVR 327
YFQLLDEIRIREEFQLRTFGTKREGDVR
Sbjct: 386 YFQLLDEIRIREEFQLRTFGTKREGDVR 413
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224137508|ref|XP_002322575.1| predicted protein [Populus trichocarpa] gi|222867205|gb|EEF04336.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 539 bits (1388), Expect = e-151, Method: Compositional matrix adjust.
Identities = 260/329 (79%), Positives = 296/329 (89%), Gaps = 5/329 (1%)
Query: 1 MRVIVQQSEPSRTSDCND--KTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGM 58
MRVIV PSR+ + D K G ELLCVVRA+LKKIKRRVLVGDKVVVGSIDWVDRRGM
Sbjct: 1 MRVIVTAG-PSRSREIEDSSKNGSELLCVVRAVLKKIKRRVLVGDKVVVGSIDWVDRRGM 59
Query: 59 IENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVE 118
IENVFQRS+EILDPPVANVDHLL+LFS++QP+L+ F LTRFL+EAESTGIP+TLALNKVE
Sbjct: 60 IENVFQRSSEILDPPVANVDHLLVLFSLEQPRLDSFVLTRFLIEAESTGIPITLALNKVE 119
Query: 119 LVDEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINA 178
LVD+EVL+ W SRL +WGYEPLFCSV+SK+GLD+L LRDQTTVI+GPSGVGKSSLINA
Sbjct: 120 LVDQEVLSDWNSRLRSWGYEPLFCSVDSKMGLDTLASVLRDQTTVILGPSGVGKSSLINA 179
Query: 179 LRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLA 238
LR+ P++ D A DNWF+PI+GSKWFEDQRVGEVST++GRGKHTTR+VSLLPL GGGY+A
Sbjct: 180 LRNKPNSHDEA--DNWFDPIMGSKWFEDQRVGEVSTRNGRGKHTTRNVSLLPLGGGGYVA 237
Query: 239 DTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWERYQ 298
DTPGF+QPSLLKVTKQSLAQ FPEI+ +L NEPAKC+F +CLH+GEPGC+VKGDWERY
Sbjct: 238 DTPGFSQPSLLKVTKQSLAQYFPEIRTVLSVNEPAKCTFKDCLHVGEPGCIVKGDWERYP 297
Query: 299 YYFQLLDEIRIREEFQLRTFGTKREGDVR 327
YFQLLDEI+IREEFQLRTFGTKRE +VR
Sbjct: 298 LYFQLLDEIKIREEFQLRTFGTKREDNVR 326
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225425472|ref|XP_002279434.1| PREDICTED: putative ribosome biogenesis GTPase RsgA-like isoform 3 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 521 bits (1341), Expect = e-145, Method: Compositional matrix adjust.
Identities = 252/312 (80%), Positives = 281/312 (90%), Gaps = 3/312 (0%)
Query: 19 KTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVD 78
+ GVELLCVVRA+LKKIKRRVLVGDKV+VGSIDWVDRRG+IENVF R +EILDPPVANVD
Sbjct: 118 RVGVELLCVVRAVLKKIKRRVLVGDKVLVGSIDWVDRRGVIENVFSRKSEILDPPVANVD 177
Query: 79 HLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYE 138
HLL+LF+M+QPKLE ++LTRFLVEAESTGIP+TLALNK ELVDEE WKSRL +WGY
Sbjct: 178 HLLVLFAMEQPKLEVYSLTRFLVEAESTGIPITLALNKSELVDEETRVAWKSRLRSWGYG 237
Query: 139 PLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSS-PHASDAADVDNWFEP 197
P+FCSVESK GLD+L LR+QTTVIVGPSGVGKSSLINALRS+ P + +++ +NWF+
Sbjct: 238 PVFCSVESKFGLDTLAFSLREQTTVIVGPSGVGKSSLINALRSNHPLINVSSEENNWFDS 297
Query: 198 ILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLA 257
ILGSK E+QRVGEVS +SGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVT QSLA
Sbjct: 298 ILGSKLLEEQRVGEVSVRSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTTQSLA 357
Query: 258 QTFPEIKEML--KANEPAKCSFNNCLHLGEPGCVVKGDWERYQYYFQLLDEIRIREEFQL 315
QTFPEI+++L ANEP KCSFN+CLHLGEPGCVVKGDWERY YYFQLLDEI+IREEFQL
Sbjct: 358 QTFPEIRKLLSGSANEPEKCSFNDCLHLGEPGCVVKGDWERYPYYFQLLDEIKIREEFQL 417
Query: 316 RTFGTKREGDVR 327
RT GTKREGDVR
Sbjct: 418 RTLGTKREGDVR 429
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297738426|emb|CBI27627.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 517 bits (1332), Expect = e-144, Method: Compositional matrix adjust.
Identities = 252/312 (80%), Positives = 281/312 (90%), Gaps = 3/312 (0%)
Query: 19 KTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVD 78
+ GVELLCVVRA+LKKIKRRVLVGDKV+VGSIDWVDRRG+IENVF R +EILDPPVANVD
Sbjct: 27 RVGVELLCVVRAVLKKIKRRVLVGDKVLVGSIDWVDRRGVIENVFSRKSEILDPPVANVD 86
Query: 79 HLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYE 138
HLL+LF+M+QPKLE ++LTRFLVEAESTGIP+TLALNK ELVDEE WKSRL +WGY
Sbjct: 87 HLLVLFAMEQPKLEVYSLTRFLVEAESTGIPITLALNKSELVDEETRVAWKSRLRSWGYG 146
Query: 139 PLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSS-PHASDAADVDNWFEP 197
P+FCSVESK GLD+L LR+QTTVIVGPSGVGKSSLINALRS+ P + +++ +NWF+
Sbjct: 147 PVFCSVESKFGLDTLAFSLREQTTVIVGPSGVGKSSLINALRSNHPLINVSSEENNWFDS 206
Query: 198 ILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLA 257
ILGSK E+QRVGEVS +SGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVT QSLA
Sbjct: 207 ILGSKLLEEQRVGEVSVRSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTTQSLA 266
Query: 258 QTFPEIKEML--KANEPAKCSFNNCLHLGEPGCVVKGDWERYQYYFQLLDEIRIREEFQL 315
QTFPEI+++L ANEP KCSFN+CLHLGEPGCVVKGDWERY YYFQLLDEI+IREEFQL
Sbjct: 267 QTFPEIRKLLSGSANEPEKCSFNDCLHLGEPGCVVKGDWERYPYYFQLLDEIKIREEFQL 326
Query: 316 RTFGTKREGDVR 327
RT GTKREGDVR
Sbjct: 327 RTLGTKREGDVR 338
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|42563017|ref|NP_176911.2| Minichromosome maintenance (MCM2/3/5) protein [Arabidopsis thaliana] gi|66792692|gb|AAY56448.1| At1g67440 [Arabidopsis thaliana] gi|332196525|gb|AEE34646.1| Minichromosome maintenance (MCM2/3/5) protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 511 bits (1315), Expect = e-142, Method: Compositional matrix adjust.
Identities = 254/330 (76%), Positives = 280/330 (84%), Gaps = 7/330 (2%)
Query: 1 MRVIVQQSEPSRTSDCND---KTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRG 57
MRVIVQ S TSD ++ KTGVELLCVVRA+LKKI+RRVLVGDKV+VGSIDWVDRRG
Sbjct: 44 MRVIVQDVANSVTSDDDNDSSKTGVELLCVVRAVLKKIRRRVLVGDKVLVGSIDWVDRRG 103
Query: 58 MIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKV 117
MIENVF R +EILDPPVANVDHLL+LFS+DQPKLEPF LTRFLVEAEST IPLTLALNK
Sbjct: 104 MIENVFHRRSEILDPPVANVDHLLVLFSLDQPKLEPFTLTRFLVEAESTRIPLTLALNKT 163
Query: 118 ELVDEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLIN 177
EL+ EE L TWK RL W YEPLFCSV +K GLD + LRDQT+VIVGPSGVGKSSLIN
Sbjct: 164 ELISEEELETWKIRLRGWNYEPLFCSVGTKDGLDDIAFVLRDQTSVIVGPSGVGKSSLIN 223
Query: 178 ALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYL 237
LRS+ H + +NWFEP+LG+KWF+DQRVGEVS++SGRGKHTTR+VSLLP+S GGYL
Sbjct: 224 VLRSN-HGGGVVEDENWFEPMLGNKWFDDQRVGEVSSRSGRGKHTTRNVSLLPVSEGGYL 282
Query: 238 ADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWERY 297
ADTPGFNQPSLLKVTK SLA FPEI+ M+ E KC F +CLH+GEPGCVVKGDWERY
Sbjct: 283 ADTPGFNQPSLLKVTKHSLAHCFPEIRNMI---ESEKCGFRDCLHIGEPGCVVKGDWERY 339
Query: 298 QYYFQLLDEIRIREEFQLRTFGTKREGDVR 327
YY QLLDEIRIREEFQLRTFGTKRE DVR
Sbjct: 340 PYYLQLLDEIRIREEFQLRTFGTKREDDVR 369
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|3176667|gb|AAC18791.1| Similar to hypothetical 41.9KD protein gb|1001369 from sequence of Synechocystis sp. gb|D64006 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 499 bits (1285), Expect = e-139, Method: Compositional matrix adjust.
Identities = 254/347 (73%), Positives = 280/347 (80%), Gaps = 24/347 (6%)
Query: 1 MRVIVQQSEPSRTSDCND---KTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRG 57
MRVIVQ S TSD ++ KTGVELLCVVRA+LKKI+RRVLVGDKV+VGSIDWVDRRG
Sbjct: 44 MRVIVQDVANSVTSDDDNDSSKTGVELLCVVRAVLKKIRRRVLVGDKVLVGSIDWVDRRG 103
Query: 58 MIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKV 117
MIENVF R +EILDPPVANVDHLL+LFS+DQPKLEPF LTRFLVEAEST IPLTLALNK
Sbjct: 104 MIENVFHRRSEILDPPVANVDHLLVLFSLDQPKLEPFTLTRFLVEAESTRIPLTLALNKT 163
Query: 118 ELVDEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLIN 177
EL+ EE L TWK RL W YEPLFCSV +K GLD + LRDQT+VIVGPSGVGKSSLIN
Sbjct: 164 ELISEEELETWKIRLRGWNYEPLFCSVGTKDGLDDIAFVLRDQTSVIVGPSGVGKSSLIN 223
Query: 178 ALRSSPHASDAADVDNWFEPI-----------------LGSKWFEDQRVGEVSTKSGRGK 220
LRS+ H + +NWFEP+ LG+KWF+DQRVGEVS++SGRGK
Sbjct: 224 VLRSN-HGGGVVEDENWFEPLKFCLPDSYELSFCDIQMLGNKWFDDQRVGEVSSRSGRGK 282
Query: 221 HTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNC 280
HTTR+VSLLP+S GGYLADTPGFNQPSLLKVTK SLA FPEI+ M+ E KC F +C
Sbjct: 283 HTTRNVSLLPVSEGGYLADTPGFNQPSLLKVTKHSLAHCFPEIRNMI---ESEKCGFRDC 339
Query: 281 LHLGEPGCVVKGDWERYQYYFQLLDEIRIREEFQLRTFGTKREGDVR 327
LH+GEPGCVVKGDWERY YY QLLDEIRIREEFQLRTFGTKRE DVR
Sbjct: 340 LHIGEPGCVVKGDWERYPYYLQLLDEIRIREEFQLRTFGTKREDDVR 386
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 327 | ||||||
| TAIR|locus:2197618 | 433 | emb1688 "embryo defective 1688 | 0.987 | 0.745 | 0.775 | 3.4e-132 | |
| UNIPROTKB|A8IGD6 | 308 | CHLREDRAFT_49443 "Predicted pr | 0.492 | 0.522 | 0.472 | 1.1e-60 | |
| UNIPROTKB|Q81WH7 | 293 | rsgA "Putative ribosome biogen | 0.467 | 0.522 | 0.373 | 5.2e-41 | |
| TIGR_CMR|BA_3999 | 293 | BA_3999 "conserved hypothetica | 0.467 | 0.522 | 0.373 | 5.2e-41 | |
| UNIPROTKB|Q3AC25 | 290 | rsgA "Putative ribosome biogen | 0.474 | 0.534 | 0.329 | 4.4e-37 | |
| TIGR_CMR|CHY_1477 | 290 | CHY_1477 "GTP-binding protein" | 0.474 | 0.534 | 0.329 | 4.4e-37 | |
| UNIPROTKB|Q9X242 | 295 | rsgA "Putative ribosome biogen | 0.492 | 0.545 | 0.309 | 2.6e-32 | |
| UNIPROTKB|Q71YJ7 | 291 | rsgA1 "Putative ribosome bioge | 0.299 | 0.336 | 0.387 | 5.8e-30 | |
| TIGR_CMR|VC_0340 | 387 | VC_0340 "ribosome small subuni | 0.486 | 0.410 | 0.341 | 1.8e-24 | |
| UNIPROTKB|Q8EJ79 | 354 | rsgA "Putative ribosome biogen | 0.458 | 0.423 | 0.329 | 3.9e-23 |
| TAIR|locus:2197618 emb1688 "embryo defective 1688" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1296 (461.3 bits), Expect = 3.4e-132, P = 3.4e-132
Identities = 256/330 (77%), Positives = 280/330 (84%)
Query: 1 MRVIVQQSEPSRTSDC-ND--KTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRG 57
MRVIVQ S TSD ND KTGVELLCVVRA+LKKI+RRVLVGDKV+VGSIDWVDRRG
Sbjct: 44 MRVIVQDVANSVTSDDDNDSSKTGVELLCVVRAVLKKIRRRVLVGDKVLVGSIDWVDRRG 103
Query: 58 MIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKV 117
MIENVF R +EILDPPVANVDHLL+LFS+DQPKLEPF LTRFLVEAEST IPLTLALNK
Sbjct: 104 MIENVFHRRSEILDPPVANVDHLLVLFSLDQPKLEPFTLTRFLVEAESTRIPLTLALNKT 163
Query: 118 ELVDEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLIN 177
EL+ EE L TWK RL W YEPLFCSV +K GLD + LRDQT+VIVGPSGVGKSSLIN
Sbjct: 164 ELISEEELETWKIRLRGWNYEPLFCSVGTKDGLDDIAFVLRDQTSVIVGPSGVGKSSLIN 223
Query: 178 ALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYL 237
LRS+ H + +NWFEP+LG+KWF+DQRVGEVS++SGRGKHTTR+VSLLP+S GGYL
Sbjct: 224 VLRSN-HGGGVVEDENWFEPMLGNKWFDDQRVGEVSSRSGRGKHTTRNVSLLPVSEGGYL 282
Query: 238 ADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWERY 297
ADTPGFNQPSLLKVTK SLA FPEI+ M+ E KC F +CLH+GEPGCVVKGDWERY
Sbjct: 283 ADTPGFNQPSLLKVTKHSLAHCFPEIRNMI---ESEKCGFRDCLHIGEPGCVVKGDWERY 339
Query: 298 QYYFQLLDEIRIREEFQLRTFGTKREGDVR 327
YY QLLDEIRIREEFQLRTFGTKRE DVR
Sbjct: 340 PYYLQLLDEIRIREEFQLRTFGTKREDDVR 369
|
|
| UNIPROTKB|A8IGD6 CHLREDRAFT_49443 "Predicted protein" [Chlamydomonas reinhardtii (taxid:3055)] | Back alignment and assigned GO terms |
|---|
Score = 379 (138.5 bits), Expect = 1.1e-60, Sum P(2) = 1.1e-60
Identities = 78/165 (47%), Positives = 108/165 (65%)
Query: 24 LLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLL 83
LLC +R+LL+K+++ V+VGD V V ++DWV RG + V RS+ + DP VANV+H LL+
Sbjct: 2 LLCSLRSLLRKLRQDVVVGDVVRVEAVDWVAGRGAVSEVLPRSSRLTDPAVANVEHALLV 61
Query: 84 FSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRL-HTWGYEPLFC 142
F++D P E ++RFLV E+ G+ +L LNK +LV EVL RL WGYEP+
Sbjct: 62 FALDTPPFEEQQVSRFLVAYEAAGVSFSLVLNKADLVAPEVL---AGRLAQAWGYEPVVL 118
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASD 187
S E+ G++ + RL D+ +V+ GPSG GKSSLIN LR H D
Sbjct: 119 SCETGEGVEQVAARLSDRVSVVAGPSGAGKSSLINLLRRGRHRPD 163
|
|
| UNIPROTKB|Q81WH7 rsgA "Putative ribosome biogenesis GTPase RsgA" [Bacillus anthracis (taxid:1392)] | Back alignment and assigned GO terms |
|---|
Score = 246 (91.7 bits), Expect = 5.2e-41, Sum P(2) = 5.2e-41
Identities = 59/158 (37%), Positives = 90/158 (56%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K K LVGD+VV + + G + VF R E++ PP+ANVD +L+FS
Sbjct: 25 CRGRGVFRKNKITPLVGDQVVFQADN--PSEGYVLEVFDRKNELVRPPIANVDQAILVFS 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW---GYEPLFC 142
+P P L RFLV E I + ++K++LVDE++ T ++ + + GY+ LF
Sbjct: 83 AVEPDFNPGLLDRFLVLIEYHNIKPIICISKMDLVDEKMRETVEAYANDYREMGYDVLFT 142
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALR 180
S+ + +D L L +V+ G SGVGKSS++N LR
Sbjct: 143 SINTSESIDILKPFLEGCVSVVAGQSGVGKSSMLNVLR 180
|
|
| TIGR_CMR|BA_3999 BA_3999 "conserved hypothetical protein TIGR00157" [Bacillus anthracis str. Ames (taxid:198094)] | Back alignment and assigned GO terms |
|---|
Score = 246 (91.7 bits), Expect = 5.2e-41, Sum P(2) = 5.2e-41
Identities = 59/158 (37%), Positives = 90/158 (56%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K K LVGD+VV + + G + VF R E++ PP+ANVD +L+FS
Sbjct: 25 CRGRGVFRKNKITPLVGDQVVFQADN--PSEGYVLEVFDRKNELVRPPIANVDQAILVFS 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW---GYEPLFC 142
+P P L RFLV E I + ++K++LVDE++ T ++ + + GY+ LF
Sbjct: 83 AVEPDFNPGLLDRFLVLIEYHNIKPIICISKMDLVDEKMRETVEAYANDYREMGYDVLFT 142
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALR 180
S+ + +D L L +V+ G SGVGKSS++N LR
Sbjct: 143 SINTSESIDILKPFLEGCVSVVAGQSGVGKSSMLNVLR 180
|
|
| UNIPROTKB|Q3AC25 rsgA "Putative ribosome biogenesis GTPase RsgA" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] | Back alignment and assigned GO terms |
|---|
Score = 215 (80.7 bits), Expect = 4.4e-37, Sum P(2) = 4.4e-37
Identities = 54/164 (32%), Positives = 88/164 (53%)
Query: 20 TGVEL-LCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVD 78
TG + +C R KK ++L GD+V++ + + G+IE++ R E++ PP+ANVD
Sbjct: 17 TGKAIYMCKARGKFKKDNIKILTGDRVIIRELV-PNSEGVIESLLPRKNELIRPPIANVD 75
Query: 79 HLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEE---VLNTWKSRLHTW 135
+LL+F+ P + R LV A + + + L NK +LV+ E + +K L
Sbjct: 76 QVLLVFAFADPFPSTELIDRLLVMAYALRLEVVLVFNKFDLVNPESQKLFEYYKKILP-- 133
Query: 136 GYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINAL 179
+ + + G+D L L + +V+ GPSGVGKS+LIN L
Sbjct: 134 --KVVAITARGDTGIDELTDYLNQKISVLAGPSGVGKSTLINRL 175
|
|
| TIGR_CMR|CHY_1477 CHY_1477 "GTP-binding protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] | Back alignment and assigned GO terms |
|---|
Score = 215 (80.7 bits), Expect = 4.4e-37, Sum P(2) = 4.4e-37
Identities = 54/164 (32%), Positives = 88/164 (53%)
Query: 20 TGVEL-LCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVD 78
TG + +C R KK ++L GD+V++ + + G+IE++ R E++ PP+ANVD
Sbjct: 17 TGKAIYMCKARGKFKKDNIKILTGDRVIIRELV-PNSEGVIESLLPRKNELIRPPIANVD 75
Query: 79 HLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEE---VLNTWKSRLHTW 135
+LL+F+ P + R LV A + + + L NK +LV+ E + +K L
Sbjct: 76 QVLLVFAFADPFPSTELIDRLLVMAYALRLEVVLVFNKFDLVNPESQKLFEYYKKILP-- 133
Query: 136 GYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINAL 179
+ + + G+D L L + +V+ GPSGVGKS+LIN L
Sbjct: 134 --KVVAITARGDTGIDELTDYLNQKISVLAGPSGVGKSTLINRL 175
|
|
| UNIPROTKB|Q9X242 rsgA "Putative ribosome biogenesis GTPase RsgA" [Thermotoga maritima MSB8 (taxid:243274)] | Back alignment and assigned GO terms |
|---|
Score = 223 (83.6 bits), Expect = 2.6e-32, Sum P(2) = 2.6e-32
Identities = 51/165 (30%), Positives = 93/165 (56%)
Query: 17 NDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVAN 76
+++TG +LC +R + ++ VGD+V + G+IENV R + P VAN
Sbjct: 21 DEETGERILCKLRGKFRLQNLKIYVGDRVEYTPDE--TGSGVIENVLHRKNLLTKPHVAN 78
Query: 77 VDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW- 135
VD ++L+ ++ P+ + + +FLV AE + + +NK++L DE+ L + +
Sbjct: 79 VDQVILVVTVKMPETSTYIIDKFLVLAEKNELETVMVINKMDLYDEDDLRKVRELEEIYS 138
Query: 136 GYEPLF-CSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINAL 179
G P+ S ++ +G++ L + L+ + + + G SGVGKSSL+NA+
Sbjct: 139 GLYPIVKTSAKTGMGIEELKEYLKGKISTMAGLSGVGKSSLLNAI 183
|
|
| UNIPROTKB|Q71YJ7 rsgA1 "Putative ribosome biogenesis GTPase RsgA 1" [Listeria monocytogenes serotype 4b str. F2365 (taxid:265669)] | Back alignment and assigned GO terms |
|---|
Score = 199 (75.1 bits), Expect = 5.8e-30, Sum P(2) = 5.8e-30
Identities = 43/111 (38%), Positives = 63/111 (56%)
Query: 208 RVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEML 267
+ E+S GRGKHTTRHV L+P+ G G++ADTPGF+ + ++L FPE+++
Sbjct: 184 KTAEISNALGRGKHTTRHVELMPI-GDGFVADTPGFSSIEWDDLQPETLQFCFPEMEDRR 242
Query: 268 KANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIRE 311
C F C+H EP C VK E RY++Y Q+L E++ R+
Sbjct: 243 SG-----CKFRGCMHDNEPNCAVKTAVEANEIAEFRYKHYIQILQELKNRK 288
|
|
| TIGR_CMR|VC_0340 VC_0340 "ribosome small subunit-dependent GTPase A" [Vibrio cholerae O1 biovar El Tor (taxid:686)] | Back alignment and assigned GO terms |
|---|
Score = 210 (79.0 bits), Expect = 1.8e-24, Sum P(2) = 1.8e-24
Identities = 57/167 (34%), Positives = 93/167 (55%)
Query: 16 CNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVA 75
CN + G+E L +L + L G + G ++ V+ R + V + L P A
Sbjct: 65 CNLRRGIESLVSGDNVLWRPGAETLAG---ISGVVEAVEARSSVL-VRPDYYDGLKPVAA 120
Query: 76 NVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEV---LNTWKSRL 132
NVD ++++ S+ P+L + R+L+ +E+ GI + LNK++L+ E+ +TW +
Sbjct: 121 NVDQMVIVSSV-LPELSLNIIDRYLIASETLGIAPLIVLNKIDLLSPELREQYSTWLNDY 179
Query: 133 HTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINAL 179
GY+ L+ S ++ G+ L +LRD+T V VG SGVGKSSL+NAL
Sbjct: 180 RAIGYDVLYVSKKTGEGIADLEVKLRDRTNVFVGQSGVGKSSLVNAL 226
|
|
| UNIPROTKB|Q8EJ79 rsgA "Putative ribosome biogenesis GTPase RsgA" [Shewanella oneidensis MR-1 (taxid:211586)] | Back alignment and assigned GO terms |
|---|
Score = 181 (68.8 bits), Expect = 3.9e-23, Sum P(2) = 3.9e-23
Identities = 56/170 (32%), Positives = 93/170 (54%)
Query: 27 VVRALLKKIKRRVLVGDKVVVG-SIDWVDRRGM---IENVFQRSTEILDPPV-------- 74
+VR +++ ++ GDKV+V +I+ G+ +E V R + + P +
Sbjct: 65 IVRCNIRRTITSLVTGDKVIVRLAIESQANSGIAGIVEAVHPRHSSLSRPDLYDGVKIIA 124
Query: 75 ANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHT 134
+N+D +L++ S+ P + R+LV AE T IP + LNK++L+ E + L
Sbjct: 125 SNIDQILIVSSV-LPSFTTQIIDRYLVAAEDTDIPPIIILNKIDLLTPEEAPAIEEALKR 183
Query: 135 W---GYEPLFCSVESKLG--LDSLLQRLRDQTTVIVGPSGVGKSSLINAL 179
+ GY P++ V SKLG L+++ L+D+ +V G SGVGKSSL+NAL
Sbjct: 184 YQDIGY-PVY-KVSSKLGEGLETIKALLKDKVSVFAGQSGVGKSSLVNAL 231
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| A8FD43 | RSGA_BACP2 | 3, ., 6, ., 1, ., - | 0.3214 | 0.8165 | 0.8959 | yes | no |
| A2C5M0 | RSGA_PROM3 | 3, ., 6, ., 1, ., - | 0.3869 | 0.8103 | 0.8255 | yes | no |
| Q7V9C6 | RSGA_PROMM | 3, ., 6, ., 1, ., - | 0.3904 | 0.8103 | 0.8255 | yes | no |
| B8I262 | RSGA_CLOCE | 3, ., 6, ., 1, ., - | 0.3026 | 0.8226 | 0.8819 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 327 | |||
| PRK12289 | 352 | PRK12289, PRK12289, GTPase RsgA; Reviewed | 1e-118 | |
| cd01854 | 211 | cd01854, YjeQ_EngC, Ribosomal interacting GTPase Y | 2e-84 | |
| COG1162 | 301 | COG1162, COG1162, Predicted GTPases [General funct | 2e-81 | |
| PRK00098 | 298 | PRK00098, PRK00098, GTPase RsgA; Reviewed | 4e-78 | |
| TIGR00157 | 245 | TIGR00157, TIGR00157, ribosome small subunit-depen | 6e-70 | |
| pfam03193 | 161 | pfam03193, DUF258, Protein of unknown function, DU | 7e-68 | |
| PRK12288 | 347 | PRK12288, PRK12288, GTPase RsgA; Reviewed | 3e-43 | |
| PRK01889 | 356 | PRK01889, PRK01889, GTPase RsgA; Reviewed | 7e-29 | |
| cd01859 | 157 | cd01859, MJ1464, An uncharacterized, circularly pe | 6e-13 | |
| cd01849 | 146 | cd01849, YlqF_related_GTPase, Circularly permuted | 2e-09 | |
| COG1161 | 322 | COG1161, COG1161, Predicted GTPases [General funct | 3e-07 | |
| cd01857 | 140 | cd01857, HSR1_MMR1, A circularly permuted subfamil | 3e-07 | |
| pfam01926 | 117 | pfam01926, MMR_HSR1, 50S ribosome-binding GTPase | 9e-07 | |
| TIGR03597 | 360 | TIGR03597, GTPase_YqeH, ribosome biogenesis GTPase | 2e-06 | |
| cd01856 | 171 | cd01856, YlqF, Circularly permuted YlqF GTPase | 4e-06 | |
| cd00882 | 161 | cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s | 9e-06 | |
| PRK09563 | 287 | PRK09563, rbgA, GTPase YlqF; Reviewed | 2e-05 | |
| cd01855 | 191 | cd01855, YqeH, Circularly permuted YqeH GTPase | 3e-05 | |
| cd00880 | 161 | cd00880, Era_like, E | 1e-04 | |
| TIGR03596 | 276 | TIGR03596, GTPase_YlqF, ribosome biogenesis GTP-bi | 1e-04 | |
| cd01858 | 157 | cd01858, NGP_1, A novel nucleolar GTP-binding prot | 2e-04 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 3e-04 | |
| cd00880 | 161 | cd00880, Era_like, E | 4e-04 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 4e-04 | |
| PRK00300 | 205 | PRK00300, gmk, guanylate kinase; Provisional | 5e-04 | |
| cd04178 | 171 | cd04178, Nucleostemin_like, A circularly permuted | 8e-04 | |
| cd00882 | 161 | cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s | 0.002 | |
| cd00071 | 137 | cd00071, GMPK, Guanosine monophosphate kinase (GMP | 0.002 | |
| TIGR03594 | 429 | TIGR03594, GTPase_EngA, ribosome-associated GTPase | 0.002 | |
| PRK13796 | 365 | PRK13796, PRK13796, GTPase YqeH; Provisional | 0.003 | |
| COG1160 | 444 | COG1160, COG1160, Predicted GTPases [General funct | 0.003 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 0.004 | |
| pfam13555 | 60 | pfam13555, AAA_29, P-loop containing region of AAA | 0.004 |
| >gnl|CDD|237040 PRK12289, PRK12289, GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Score = 345 bits (886), Expect = e-118
Identities = 140/292 (47%), Positives = 185/292 (63%), Gaps = 26/292 (8%)
Query: 23 ELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLL 82
LLC R LKKI ++V+VGD+V+V DW +RG I V R TE+ PPVAN D +LL
Sbjct: 36 LLLCTRRTRLKKIGQQVMVGDRVIVEEPDWQGQRGAIAEVLPRKTELDRPPVANADQILL 95
Query: 83 LFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFC 142
+F++ +P L+P+ L+RFLV+AESTG+ + L LNK +LV W+ RL WGY+PLF
Sbjct: 96 VFALAEPPLDPWQLSRFLVKAESTGLEIVLCLNKADLVSPTEQQQWQDRLQQWGYQPLFI 155
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
SVE+ +GL++LL++LR++ TV+ GPSGVGKSSLIN L
Sbjct: 156 SVETGIGLEALLEQLRNKITVVAGPSGVGKSSLINRLIPD-------------------- 195
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+ RVG+VS K GRG+HTTRHV L L GG LADTPGFNQP L + + LA FPE
Sbjct: 196 --VELRVGKVSGKLGRGRHTTRHVELFELPNGGLLADTPGFNQPD-LDCSPRELAHYFPE 252
Query: 263 IKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWERYQYYFQLLDEIRIREEFQ 314
++ L C FN+CLH EP C V+GDWERY++Y + L+E ++E
Sbjct: 253 ARQRLAQ---GNCQFNDCLHRDEPNCAVRGDWERYEHYLEFLEEAIAQQEQL 301
|
Length = 352 |
| >gnl|CDD|206747 cd01854, YjeQ_EngC, Ribosomal interacting GTPase YjeQ/EngC, a circularly permuted subfamily of the Ras GTPases | Back alignment and domain information |
|---|
Score = 253 bits (648), Expect = 2e-84
Identities = 94/238 (39%), Positives = 129/238 (54%), Gaps = 34/238 (14%)
Query: 75 ANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHT 134
ANVD +L++FS+ +P L R+LV AE++GI + LNK +LVD+E L
Sbjct: 1 ANVDQVLIVFSLKEPFFNLRLLDRYLVAAEASGIEPVIVLNKADLVDDEELEELLEIYEK 60
Query: 135 WGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNW 194
GY L S ++ GLD L + L+ +T+V+VG SGVGKS+L+NAL P
Sbjct: 61 LGYPVLAVSAKTGEGLDELRELLKGKTSVLVGQSGVGKSTLLNAL--LPE---------- 108
Query: 195 FEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQ 254
GE+S K GRG+HTT H L PL GGG + DTPGF + LL + +
Sbjct: 109 ----------LVLATGEISEKLGRGRHTTTHRELFPLPGGGLIIDTPGFRELGLLHIDPE 158
Query: 255 SLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLD 305
LA+ FPE +E+ +C F +C H+ EPGC VK E RY+ Y +LL+
Sbjct: 159 ELAEYFPEFEELA-----GQCRFRDCTHINEPGCAVKAAVEAGEISEERYESYLKLLE 211
|
YjeQ (YloQ in Bacillus subtilis) is a ribosomal small subunit-dependent GTPase; hence also known as RsgA. YjeQ is a late-stage ribosomal biogenesis factor involved in the 30S subunit maturation, and it represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. Length = 211 |
| >gnl|CDD|224084 COG1162, COG1162, Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Score = 249 bits (637), Expect = 2e-81
Identities = 107/295 (36%), Positives = 151/295 (51%), Gaps = 39/295 (13%)
Query: 23 ELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLL 82
C R L+K + +VGD+VV + G+IE + R ++ PPVAN D ++
Sbjct: 29 VYRCRARGNLRKKDLKPVVGDRVVFEDENN---NGVIEKILPRKNVLIRPPVANNDQAII 85
Query: 83 LFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSR--LHTWGYEPL 140
+ S+ P L R+LV AE+ GI + LNK++L+D+E + GY L
Sbjct: 86 VVSLVDPDFNTNLLDRYLVLAEAGGIEPVIVLNKIDLLDDEEAAVKELLREYEDIGYPVL 145
Query: 141 FCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILG 200
F S ++ GL+ L + L + TV++G SGVGKS+LINAL
Sbjct: 146 FVSAKNGDGLEELAELLAGKITVLLGQSGVGKSTLINALLPE------------------ 187
Query: 201 SKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTF 260
+Q+ GE+S K GRG+HTT HV L PL GGG++ DTPGF L + + L Q F
Sbjct: 188 ----LNQKTGEISEKLGRGRHTTTHVELFPLPGGGWIIDTPGFRSLGLAHLEPEDLVQAF 243
Query: 261 PEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIR 308
PE E+ + +C F +C H EPGC VK E RY+ Y +LLDE+
Sbjct: 244 PEFAELAR-----QCKFRDCTHTHEPGCAVKAAVEEGEIAPERYENYLKLLDELS 293
|
Length = 301 |
| >gnl|CDD|234631 PRK00098, PRK00098, GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Score = 240 bits (615), Expect = 4e-78
Identities = 110/310 (35%), Positives = 148/310 (47%), Gaps = 48/310 (15%)
Query: 20 TGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPV----- 74
G C R +K VGD+V S + D G+I + +R ++ PP+
Sbjct: 19 DGQVYQCRARGKFRKKTNTPAVGDRVEF-SAENNDE-GVILEIHERKNLLVRPPIFKSKL 76
Query: 75 --ANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRL 132
ANVD +L+F+ +P L RFLV AE+ GI + LNK++L+D+ L + L
Sbjct: 77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEANGIKPIIVLNKIDLLDD--LEEARELL 134
Query: 133 HTW---GYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAA 189
+ GY+ L S + GLD L L + TV+ G SGVGKS+L+NAL P
Sbjct: 135 ALYRAIGYDVLELSAKEGEGLDELKPLLAGKVTVLAGQSGVGKSTLLNALA--PDL---- 188
Query: 190 DVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLL 249
+ + GE+S GRGKHTT HV L L GGG L DTPGF+ L
Sbjct: 189 ----------------ELKTGEISEALGRGKHTTTHVELYDLPGGGLLIDTPGFSSFGLH 232
Query: 250 KVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG-------DWERYQYYFQ 302
+ + L FPE + + C F NC HL EPGC VK RY+ Y Q
Sbjct: 233 DLEAEELEHYFPEFRPLS-----GDCKFRNCTHLHEPGCAVKAAVEEGEIAPSRYESYLQ 287
Query: 303 LLDEIRIREE 312
+L+EI R E
Sbjct: 288 ILEEIENRRE 297
|
Length = 298 |
| >gnl|CDD|232848 TIGR00157, TIGR00157, ribosome small subunit-dependent GTPase A | Back alignment and domain information |
|---|
Score = 217 bits (555), Expect = 6e-70
Identities = 91/262 (34%), Positives = 135/262 (51%), Gaps = 31/262 (11%)
Query: 39 VLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTR 98
++VGD+VV + + +R E+ P VAN+D ++++ S P+L L R
Sbjct: 1 LVVGDRVVWE--PGNPVKVYGGAIAERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDR 58
Query: 99 FLVEAESTGIPLTLALNKVELVDEE-VLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRL 157
FLV AE+ I + LNK++L+D+E + GY+ L S +++ GL L++ L
Sbjct: 59 FLVVAEAQNIEPIIVLNKIDLLDDEDMEKEQLDIYRNIGYQVLMTSSKNQDGLKELIEAL 118
Query: 158 RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSG 217
+++ +V G SGVGKSSLINAL S Q+V ++S+K G
Sbjct: 119 QNRISVFAGQSGVGKSSLINALDPSVK----------------------QQVNDISSKLG 156
Query: 218 RGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSF 277
GKHTT HV L GG +ADTPGFN+ L + + L Q F E ++ L C F
Sbjct: 157 LGKHTTTHVELFHFH-GGLIADTPGFNEFGLWHLEPEQLTQGFVEFRDYL-----GLCKF 210
Query: 278 NNCLHLGEPGCVVKGDWERYQY 299
+CLH EPGC V+ E+ +
Sbjct: 211 RDCLHQSEPGCAVRQAVEQGEI 232
|
Members of this protein were designated YjeQ and are now designated RsgA (ribosome small subunit-dependent GTPase A). The strongest motif in the alignment of these proteins is GXSGVGKS[ST], a classic P-loop for nucleotide binding. This protein has been shown to cleave GTP and remain bound to GDP. A role as a regulator of translation has been suggested. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option) [Protein synthesis, Translation factors]. Length = 245 |
| >gnl|CDD|217416 pfam03193, DUF258, Protein of unknown function, DUF258 | Back alignment and domain information |
|---|
Score = 209 bits (534), Expect = 7e-68
Identities = 72/188 (38%), Positives = 95/188 (50%), Gaps = 34/188 (18%)
Query: 125 LNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPH 184
L GYE L S ++ G++ L L+ +T+V+ G SGVGKS+L+NAL
Sbjct: 1 LEELLEIYEAIGYEVLVVSAKTGEGIEELKPLLKGKTSVLAGQSGVGKSTLLNALLPE-- 58
Query: 185 ASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFN 244
D R GE+S K GRG+HTT HV L PL GGG L DTPGF
Sbjct: 59 --------------------LDLRTGEISEKLGRGRHTTTHVELFPLPGGGLLIDTPGFR 98
Query: 245 QPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RY 297
+ L + + LA+ FPE +E+ +C F +CLH EPGC VK E RY
Sbjct: 99 ELGLWHLDPEELAEYFPEFRELAG-----QCKFRDCLHTNEPGCAVKAAVENGEISEERY 153
Query: 298 QYYFQLLD 305
+ Y +LL+
Sbjct: 154 ENYLKLLE 161
|
Length = 161 |
| >gnl|CDD|237039 PRK12288, PRK12288, GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Score = 151 bits (384), Expect = 3e-43
Identities = 92/311 (29%), Positives = 145/311 (46%), Gaps = 55/311 (17%)
Query: 26 CVVRALLKKIKRRVLVGDKVVV--GSIDWVDRRGMIENVFQRSTEILDP-------PVA- 75
C +R ++ ++ GD+VV G G++E V R++ + P P+A
Sbjct: 64 CNIRRTIRS----LVTGDRVVWRPGKEALEGVSGVVEAVHPRTSVLTRPDYYDGVKPIAA 119
Query: 76 NVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEV---LNTWKSRL 132
N+D ++++ ++ P+L + R+LV E+ GI + LNK++L+D+E +N
Sbjct: 120 NIDQIVIVSAV-LPELSLNIIDRYLVACETLGIEPLIVLNKIDLLDDEGRAFVNEQLDIY 178
Query: 133 HTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVD 192
GY L S + GL+ L L + ++ VG SGVGKSSLINAL P A
Sbjct: 179 RNIGYRVLMVSSHTGEGLEELEAALTGRISIFVGQSGVGKSSLINALL--PEA------- 229
Query: 193 NWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVT 252
+ VG+VS SG G+HTT L GG L D+PG + L +
Sbjct: 230 -------------EILVGDVSDNSGLGQHTTTAARLYHFPHGGDLIDSPGVREFGLWHLE 276
Query: 253 KQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGC-----VVKGDW--ERYQYYFQLL- 304
+ + Q F E ++ L C F +C H +PGC V +G R++ Y ++L
Sbjct: 277 PEQVTQGFVEFRDYLGT-----CKFRDCKHDDDPGCALREAVEEGKIAETRFENYHRILE 331
Query: 305 --DEIRIREEF 313
E++ R F
Sbjct: 332 SMAEVKTRRHF 342
|
Length = 347 |
| >gnl|CDD|234988 PRK01889, PRK01889, GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Score = 113 bits (285), Expect = 7e-29
Identities = 85/294 (28%), Positives = 123/294 (41%), Gaps = 67/294 (22%)
Query: 42 GDKVVVGSIDWV--------------DRRGMIENVFQRST-------EILDPPVANVDHL 80
GD+ VG DWV RR ++F R +++ ANVD +
Sbjct: 66 GDRPAVG--DWVLLDNEKKARIVRLLPRR----SLFSRKAAGTRSEEQLI---AANVDTV 116
Query: 81 LLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPL 140
++ S++ + R+L A +G + L K +L ++ + G L
Sbjct: 117 FIVCSLNHD-FNLRRIERYLALAWESGAEPVIVLTKADLCEDAEEKIAEVEALAPGVPVL 175
Query: 141 FCSVESKLGLDSLLQRLRD-QTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPIL 199
S GLD L L +T ++G SGVGKS+L+NAL L
Sbjct: 176 AVSALDGEGLDVLAAWLSGGKTVALLGSSGVGKSTLVNAL-------------------L 216
Query: 200 GSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQT 259
G E Q+ G V +G+HTT H L PL GG L DTPG + L + + +T
Sbjct: 217 GE---EVQKTGAVREDDSKGRHTTTHRELHPLPSGGLLIDTPGMRELQLWD-AEDGVEET 272
Query: 260 FPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG-------DWERYQYYFQLLDE 306
F +I+E+ A+C F +C H EPGC V+ D R Q Y +L E
Sbjct: 273 FSDIEEL-----AAQCRFRDCAHEAEPGCAVQAAIENGELDERRLQSYRKLQRE 321
|
Length = 356 |
| >gnl|CDD|206752 cd01859, MJ1464, An uncharacterized, circularly permuted subfamily of the Ras GTPases | Back alignment and domain information |
|---|
Score = 65.4 bits (160), Expect = 6e-13
Identities = 46/148 (31%), Positives = 63/148 (42%), Gaps = 33/148 (22%)
Query: 102 EAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVESKLG----LDSLLQRL 157
A G L + LNK +LV EVL WK + G ++ S +LG ++ +
Sbjct: 35 MALELGKKLIIVLNKADLVPREVLEKWKEVFESEGLPVVYVSARERLGTRILRRTIKELA 94
Query: 158 RDQTTVIVGPSG---VGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214
D VIVG G VGKSS+INAL+ AS + PI GS +
Sbjct: 95 IDGKPVIVGVVGYPKVGKSSIINALKGRHSASTS--------PIPGSPGY---------- 136
Query: 215 KSGRGKHTTRHVSLLPLSGGGYLADTPG 242
T+ + L+ + YL DTPG
Sbjct: 137 --------TKGIQLVRIDSKIYLIDTPG 156
|
This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus. Length = 157 |
| >gnl|CDD|206746 cd01849, YlqF_related_GTPase, Circularly permuted YlqF-related GTPases | Back alignment and domain information |
|---|
Score = 54.7 bits (132), Expect = 2e-09
Identities = 40/154 (25%), Positives = 54/154 (35%), Gaps = 40/154 (25%)
Query: 101 VEAESTGIPLTLALNKVELVDEEVLNTWKSRL-HTWGYEPLFCSVESKLGLDSLLQRLRD 159
V L + LNK +LV +EVL W + L +G + F S + G+ L +
Sbjct: 22 VLINEKNKKLIMVLNKADLVPKEVLRKWVAELSELYGTKTFFISATNGQGILKLKAEITK 81
Query: 160 QTTV----------IVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRV 209
Q +VG VGKSS INAL +
Sbjct: 82 QKLKLKYKKGIRVGVVGLPNVGKSSFINALLN---------------------------- 113
Query: 210 GEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGF 243
+ K G TT+ + L YL DTPG
Sbjct: 114 -KFKLKVGSIPGTTKLQQDVKLDKEIYLYDTPGI 146
|
These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases. Length = 146 |
| >gnl|CDD|224083 COG1161, COG1161, Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 3e-07
Identities = 40/150 (26%), Positives = 56/150 (37%), Gaps = 48/150 (32%)
Query: 112 LALNKVELVDEEVLNTWKSRL-HTWGYEPLFCSVESKLGL-----------DSLLQRLRD 159
L LNK +L +EV WK G +P+F S +S+ G + ++RL+
Sbjct: 66 LVLNKADLAPKEVTKKWKKYFKKEEGIKPIFVSAKSRQGGKKIRKALEKLSEEKIKRLKK 125
Query: 160 -------QTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV 212
+VG VGKS+LIN L A
Sbjct: 126 KGLLKRKIRVGVVGYPNVGKSTLINRLLGKKVAK-------------------------T 160
Query: 213 STKSGRGKHTTRHVSLLPLSGGGYLADTPG 242
S + G TT+ + + L G YL DTPG
Sbjct: 161 SNRPG----TTKGIQWIKLDDGIYLLDTPG 186
|
Length = 322 |
| >gnl|CDD|206750 cd01857, HSR1_MMR1, A circularly permuted subfamily of the Ras GTPases | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 3e-07
Identities = 43/131 (32%), Positives = 50/131 (38%), Gaps = 41/131 (31%)
Query: 112 LALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVG 171
L LNK +LV EE W G LF S L + T +VG VG
Sbjct: 47 LLLNKADLVTEEQRKAWARYFKKEGIVVLFFSA------------LNEATIGLVGYPNVG 94
Query: 172 KSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPL 231
KSSLINAL +GSK +VS S GK T+H + L
Sbjct: 95 KSSLINAL-------------------VGSK--------KVSVSSTPGK--TKHFQTIFL 125
Query: 232 SGGGYLADTPG 242
G L D PG
Sbjct: 126 EPGITLCDCPG 136
|
Human HSR1 is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N-terminus. Length = 140 |
| >gnl|CDD|216791 pfam01926, MMR_HSR1, 50S ribosome-binding GTPase | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 9e-07
Identities = 28/105 (26%), Positives = 36/105 (34%), Gaps = 31/105 (29%)
Query: 163 VIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHT 222
+VG VGKS+LINAL +V VS G T
Sbjct: 3 ALVGRPNVGKSTLINALT-------------------------GAKVAIVSDYPG----T 33
Query: 223 TRHVSLLPLSGG--GYLADTPGFNQPSLLKVTKQSLAQTFPEIKE 265
TR L L G L DTPG + + + + I+E
Sbjct: 34 TRDPILGVLGLGRQIILVDTPGLIEGASEGKGVEGFNRFLEAIRE 78
|
The full-length GTPase protein is required for the complete activity of the protein of interacting with the 50S ribosome and binding of both adenine and guanine nucleotides, with a preference for guanine nucleotide. Length = 117 |
| >gnl|CDD|213834 TIGR03597, GTPase_YqeH, ribosome biogenesis GTPase YqeH | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 2e-06
Identities = 42/147 (28%), Positives = 62/147 (42%), Gaps = 36/147 (24%)
Query: 109 PLTLALNKVEL----VDEEVLNTW-KSRLHTWGYEP---LFCSVESKLGLDSLLQ---RL 157
P+ L NK++L V+ + W K R G +P + S + G+D LL +
Sbjct: 92 PVLLVGNKIDLLPKSVNLSKIKEWMKKRAKELGLKPVDIILVSAKKGNGIDELLDKIKKA 151
Query: 158 RDQTTV-IVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKS 216
R++ V +VG + VGKSSLIN +L ++ +V T S
Sbjct: 152 RNKKDVYVVGVTNVGKSSLINK-------------------LLK----QNNGDKDVITTS 188
Query: 217 GRGKHTTRHVSLLPLSGGGYLADTPGF 243
TT + +PL G L DTPG
Sbjct: 189 -PFPGTTLDLIEIPLDDGHSLYDTPGI 214
|
This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli [Protein synthesis, Other]. Length = 360 |
| >gnl|CDD|206749 cd01856, YlqF, Circularly permuted YlqF GTPase | Back alignment and domain information |
|---|
Score = 46.0 bits (110), Expect = 4e-06
Identities = 35/146 (23%), Positives = 50/146 (34%), Gaps = 46/146 (31%)
Query: 114 LNKVELVDEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQ------------- 160
LNK +L D W + G LF + ++ G+ LL++ +
Sbjct: 53 LNKADLADPAKTKKWLKYFKSQGEPVLFVNAKNGKGVKKLLKKAKKLLKENEKLKAKGLL 112
Query: 161 ----TTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKS 216
++VG VGKS+LIN LR A +VG K
Sbjct: 113 PRPLRAMVVGIPNVGKSTLINRLRGKKVA----------------------KVGN---KP 147
Query: 217 GRGKHTTRHVSLLPLSGGGYLADTPG 242
G TR + + L DTPG
Sbjct: 148 G----VTRGQQWIRIGPNIELLDTPG 169
|
Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in all eukaryotes as well as a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga). Length = 171 |
| >gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases) | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 9e-06
Identities = 25/108 (23%), Positives = 42/108 (38%), Gaps = 3/108 (2%)
Query: 53 VDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTL 112
VD G+ E E+ + D +LL+ + E A L GIP+ L
Sbjct: 52 VDTPGLDEFGGLGREELARLLLRGADLILLVVDSTDRESEEDAKLLILRRLRKEGIPIIL 111
Query: 113 ALNKVELVDEEVLNTWKSRLH---TWGYEPLFCSVESKLGLDSLLQRL 157
NK++L++E + G S ++ G+D L ++L
Sbjct: 112 VGNKIDLLEEREVEELLRLEELAKILGVPVFEVSAKTGEGVDELFEKL 159
|
Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161 |
| >gnl|CDD|236570 PRK09563, rbgA, GTPase YlqF; Reviewed | Back alignment and domain information |
|---|
Score = 44.8 bits (107), Expect = 2e-05
Identities = 36/136 (26%), Positives = 49/136 (36%), Gaps = 35/136 (25%)
Query: 109 PLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQ-----------RL 157
P L LNK +L D EV W G + L + + G+ +L+ R
Sbjct: 53 PRLLILNKSDLADPEVTKKWIEYFEEQGIKALAINAKKGQGVKKILKAAKKLLKEKNERR 112
Query: 158 RDQT-------TVIVGPSGVGKSSLINALRSSPHASDAA-----------DVDNWFE--- 196
+ + +I+G VGKS+LIN L A + E
Sbjct: 113 KAKGMRPRAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQQWIKLGKGLELLD 172
Query: 197 -P-ILGSKWFEDQRVG 210
P IL K EDQ VG
Sbjct: 173 TPGILWPK-LEDQEVG 187
|
Length = 287 |
| >gnl|CDD|206748 cd01855, YqeH, Circularly permuted YqeH GTPase | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 3e-05
Identities = 34/148 (22%), Positives = 54/148 (36%), Gaps = 31/148 (20%)
Query: 109 PLTLALNKVELV-----DEEVLNTWKSRLHTWGYEPL---FCSVESKLGLDSLLQRLRDQ 160
P+ L NK++L+ + K RL G + S + G++ L++ ++
Sbjct: 62 PVILVGNKIDLLPKDVKPNRLKQWVKKRLKIGGLKIKDVILVSAKKGWGVEELIEEIKKL 121
Query: 161 TTV-----IVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215
+VG + VGKS+LINAL + + S
Sbjct: 122 AKYRGDVYVVGATNVGKSTLINAL--LKSNGGKVQAQALVQRLTVSPIP----------- 168
Query: 216 SGRGKHTTRHVSLLPLSGGGYLADTPGF 243
TT + +PL G L DTPG
Sbjct: 169 -----GTTLGLIKIPLGEGKKLYDTPGI 191
|
YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. Length = 191 |
| >gnl|CDD|206646 cd00880, Era_like, E | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 1e-04
Identities = 28/85 (32%), Positives = 29/85 (34%), Gaps = 33/85 (38%)
Query: 163 VIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHT 222
I G VGKSSL+NAL LG VG VS G T
Sbjct: 1 AIFGRPNVGKSSLLNAL-------------------LGQN------VGIVSPIPG----T 31
Query: 223 TRHVSL--LPLSGGG--YLADTPGF 243
TR L G L DTPG
Sbjct: 32 TRDPVRKEWELLPLGPVVLIDTPGL 56
|
coli Ras-like protein (Era)-like GTPase. The Era (E. coli Ras-like protein)-like family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngB), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Length = 161 |
| >gnl|CDD|213833 TIGR03596, GTPase_YlqF, ribosome biogenesis GTP-binding protein YlqF | Back alignment and domain information |
|---|
Score = 42.5 bits (101), Expect = 1e-04
Identities = 33/131 (25%), Positives = 46/131 (35%), Gaps = 35/131 (26%)
Query: 114 LNKVELVDEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQT------------ 161
LNK +L D V W G + L + + G+ +++ +
Sbjct: 55 LNKADLADPAVTKQWLKYFEEKGIKALAINAKKGKGVKKIIKAAKKLLKEKNEKLKAKGL 114
Query: 162 ------TVIVGPSGVGKSSLINALRSSPHASDAA-----------DVDNWFE----P-IL 199
+IVG VGKS+LIN L A + + E P IL
Sbjct: 115 LNRPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQQWIKLSDGLELLDTPGIL 174
Query: 200 GSKWFEDQRVG 210
K FEDQ VG
Sbjct: 175 WPK-FEDQEVG 184
|
Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members [Protein synthesis, Other]. Length = 276 |
| >gnl|CDD|206751 cd01858, NGP_1, A novel nucleolar GTP-binding protein, circularly permuted subfamily of the Ras GTPases | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 2e-04
Identities = 28/83 (33%), Positives = 36/83 (43%), Gaps = 11/83 (13%)
Query: 110 LTLALNKVELVDEEVLNTWKSRLHTWGYEPLF-CSVESKLGLDSLLQRLR---------D 159
L LNK +LV V W L F S+ + G +L+ LR
Sbjct: 42 LIFVLNKCDLVPTWVTKRWVKVLSKEYPTLAFHASITNPFGKGALINLLRQFAKLHSDKK 101
Query: 160 QTTV-IVGPSGVGKSSLINALRS 181
Q +V +G VGKSS+IN LRS
Sbjct: 102 QISVGFIGYPNVGKSSVINTLRS 124
|
Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus. Length = 157 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 3e-04
Identities = 18/78 (23%), Positives = 33/78 (42%), Gaps = 18/78 (23%)
Query: 158 RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSG 217
+ +VGP+G GKS+L+ A+ +P G + + + ++ +
Sbjct: 24 AGEIVALVGPNGSGKSTLLRAIA------------GLLKPTSGEILIDGKDIAKLPLEEL 71
Query: 218 RGKHTTRHVSLLP-LSGG 234
R R + +P LSGG
Sbjct: 72 R-----RRIGYVPQLSGG 84
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|206646 cd00880, Era_like, E | Back alignment and domain information |
|---|
Score = 39.9 bits (94), Expect = 4e-04
Identities = 21/80 (26%), Positives = 33/80 (41%), Gaps = 4/80 (5%)
Query: 81 LLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELV---DEEVLNTWKSRLHTWGY 137
L+L +D L P L G P+ L LNK++LV +EE L +
Sbjct: 79 LVLLVVD-SDLTPVEEEAKLGLLRERGKPVLLVLNKIDLVPESEEEELLRERKLELLPDL 137
Query: 138 EPLFCSVESKLGLDSLLQRL 157
+ S G+D L +++
Sbjct: 138 PVIAVSALPGEGIDELRKKI 157
|
coli Ras-like protein (Era)-like GTPase. The Era (E. coli Ras-like protein)-like family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngB), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Length = 161 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 4e-04
Identities = 13/20 (65%), Positives = 16/20 (80%)
Query: 160 QTTVIVGPSGVGKSSLINAL 179
Q +VGPSG GK+SL+NAL
Sbjct: 377 QRIALVGPSGAGKTSLLNAL 396
|
Length = 588 |
| >gnl|CDD|234719 PRK00300, gmk, guanylate kinase; Provisional | Back alignment and domain information |
|---|
Score = 40.1 bits (95), Expect = 5e-04
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 163 VIVGPSGVGKSSLINALRSSPH 184
V+ GPSG GKS+L+ AL
Sbjct: 9 VLSGPSGAGKSTLVKALLERDP 30
|
Length = 205 |
| >gnl|CDD|206753 cd04178, Nucleostemin_like, A circularly permuted subfamily of the Ras GTPases | Back alignment and domain information |
|---|
Score = 39.1 bits (92), Expect = 8e-04
Identities = 32/108 (29%), Positives = 47/108 (43%), Gaps = 36/108 (33%)
Query: 110 LTLALNKVELVDEEVLNTW--------------------KSRLHTWGYEPLFCSVESK-- 147
L L LNK++LV +E + W K L + + S +
Sbjct: 33 LVLVLNKIDLVPKENVEKWLKYLRNEFPTVAFKASTQQQKKNLS-RKSKKVKASDDLLSS 91
Query: 148 ---LGLDSLLQRL----RDQ-----TTV-IVGPSGVGKSSLINALRSS 182
LG D+LL+ L R++ TV +VG VGKSS+IN+L+ S
Sbjct: 92 SACLGADALLKLLKNYARNKGIKTSITVGVVGYPNVGKSSVINSLKRS 139
|
Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the protein. Length = 171 |
| >gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases) | Back alignment and domain information |
|---|
Score = 38.2 bits (89), Expect = 0.002
Identities = 27/101 (26%), Positives = 33/101 (32%), Gaps = 29/101 (28%)
Query: 163 VIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKH- 221
V+VG GVGKSSL+NAL VGEVS G +
Sbjct: 1 VVVGRGGVGKSSLLNALL-------------------------GGEVGEVSDVPGTTRDP 35
Query: 222 TTRHVSLLPLSGGGYLADTPG---FNQPSLLKVTKQSLAQT 259
L L DTPG F ++ + L
Sbjct: 36 DVYVKELDKGKVKLVLVDTPGLDEFGGLGREELARLLLRGA 76
|
Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161 |
| >gnl|CDD|238026 cd00071, GMPK, Guanosine monophosphate kinase (GMPK, EC 2 | Back alignment and domain information |
|---|
Score = 37.5 bits (88), Expect = 0.002
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 163 VIVGPSGVGKSSLINALRSSPH 184
V+ GPSGVGKS+L+ L
Sbjct: 3 VLSGPSGVGKSTLLKRLLEEFD 24
|
7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines. Length = 137 |
| >gnl|CDD|234274 TIGR03594, GTPase_EngA, ribosome-associated GTPase EngA | Back alignment and domain information |
|---|
Score = 39.0 bits (92), Expect = 0.002
Identities = 23/87 (26%), Positives = 40/87 (45%), Gaps = 19/87 (21%)
Query: 109 PLTLALNKVELVDEEVLNTWKSRLHTWGY-EPLFCSVESKLGLDSLLQRL---------- 157
P+ L NK++ E+ + + ++ G+ EP+ S E G+ LL +
Sbjct: 109 PVILVANKIDGKKEDAV---AAEFYSLGFGEPIPISAEHGRGIGDLLDAILELLPEEEEE 165
Query: 158 --RDQTTV---IVGPSGVGKSSLINAL 179
+ + I+G VGKS+L+NAL
Sbjct: 166 EEEEDGPIKIAIIGRPNVGKSTLVNAL 192
|
EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability [Protein synthesis, Other]. Length = 429 |
| >gnl|CDD|237511 PRK13796, PRK13796, GTPase YqeH; Provisional | Back alignment and domain information |
|---|
Score = 38.7 bits (91), Expect = 0.003
Identities = 42/148 (28%), Positives = 60/148 (40%), Gaps = 40/148 (27%)
Query: 109 PLTLALNKVEL----VDEEVLNTW-KSRLHTWGYEPL---FCSVESKLGLDSLLQ---RL 157
P+ L NK +L V + + W + G P+ S + G+D LL+ +
Sbjct: 98 PVLLVGNKADLLPKSVKKNKVKNWLRQEAKELGLRPVDVVLISAQKGHGIDELLEAIEKY 157
Query: 158 RDQTTV-IVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE--VST 214
R+ V +VG + VGKS+LIN + I + GE V T
Sbjct: 158 REGRDVYVVGVTNVGKSTLINRI------------------I-------KEITGEKDVIT 192
Query: 215 KSGRGKHTTRHVSLLPLSGGGYLADTPG 242
S R TT +PL G +L DTPG
Sbjct: 193 TS-RFPGTTLDKIEIPLDDGSFLYDTPG 219
|
Length = 365 |
| >gnl|CDD|224082 COG1160, COG1160, Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Score = 38.7 bits (91), Expect = 0.003
Identities = 23/90 (25%), Positives = 36/90 (40%), Gaps = 20/90 (22%)
Query: 107 GIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFC-SVESKLGLDSLLQRLRDQTTV-- 163
P+ L +NK++ + E L ++ G+ S E G+ LL + +
Sbjct: 112 KKPVILVVNKIDNLKAEEL---AYEFYSLGFGEPVPISAEHGRGIGDLLDAVLELLPPDE 168
Query: 164 --------------IVGPSGVGKSSLINAL 179
I+G VGKSSLINA+
Sbjct: 169 EEEEEEETDPIKIAIIGRPNVGKSSLINAI 198
|
Length = 444 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 37.4 bits (88), Expect = 0.004
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 160 QTTVIVGPSGVGKSSLINAL 179
+ IVGPSG GKS+L+ L
Sbjct: 29 EKVAIVGPSGSGKSTLLKLL 48
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|205733 pfam13555, AAA_29, P-loop containing region of AAA domain | Back alignment and domain information |
|---|
Score = 34.8 bits (81), Expect = 0.004
Identities = 11/24 (45%), Positives = 18/24 (75%)
Query: 156 RLRDQTTVIVGPSGVGKSSLINAL 179
+ + T++ GPSG GKS+LI+A+
Sbjct: 18 PIDPKGTLLTGPSGSGKSTLIDAI 41
|
Length = 60 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 327 | |||
| COG1162 | 301 | Predicted GTPases [General function prediction onl | 100.0 | |
| PRK12289 | 352 | GTPase RsgA; Reviewed | 100.0 | |
| PRK12288 | 347 | GTPase RsgA; Reviewed | 100.0 | |
| PRK00098 | 298 | GTPase RsgA; Reviewed | 100.0 | |
| cd01854 | 287 | YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil | 100.0 | |
| TIGR00157 | 245 | ribosome small subunit-dependent GTPase A. The Aqu | 100.0 | |
| PRK01889 | 356 | GTPase RsgA; Reviewed | 100.0 | |
| PF03193 | 161 | DUF258: Protein of unknown function, DUF258; Inter | 99.98 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 99.92 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 99.91 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 99.91 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 99.91 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 99.9 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 99.9 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 99.89 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 99.89 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 99.88 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 99.88 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 99.87 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 99.87 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 99.87 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 99.86 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 99.86 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 99.86 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 99.86 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 99.85 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 99.85 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 99.84 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 99.84 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 99.84 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 99.83 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 99.83 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 99.83 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 99.83 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 99.83 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 99.82 | |
| KOG0056 | 790 | consensus Heavy metal exporter HMT1, ABC superfami | 99.82 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 99.82 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 99.82 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 99.82 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 99.82 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 99.82 | |
| cd03229 | 178 | ABC_Class3 This class is comprised of all BPD (Bin | 99.82 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 99.82 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 99.82 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 99.82 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 99.82 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 99.82 | |
| cd03216 | 163 | ABC_Carb_Monos_I This family represents the domain | 99.82 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 99.82 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 99.82 | |
| cd01858 | 157 | NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei | 99.82 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 99.82 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 99.82 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 99.82 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 99.81 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 99.81 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 99.81 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 99.81 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 99.81 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 99.81 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 99.81 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 99.81 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 99.81 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 99.81 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 99.81 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 99.81 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 99.81 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 99.81 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 99.81 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 99.81 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 99.81 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 99.8 | |
| cd03230 | 173 | ABC_DR_subfamily_A This family of ATP-binding prot | 99.8 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 99.8 | |
| cd03246 | 173 | ABCC_Protease_Secretion This family represents the | 99.8 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 99.8 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.8 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 99.8 | |
| cd03231 | 201 | ABC_CcmA_heme_exporter CcmA, the ATP-binding compo | 99.8 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 99.8 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 99.8 | |
| cd03214 | 180 | ABC_Iron-Siderophores_B12_Hemin ABC transporters, | 99.8 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 99.8 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 99.8 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 99.8 | |
| PRK13538 | 204 | cytochrome c biogenesis protein CcmA; Provisional | 99.8 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 99.8 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 99.8 | |
| TIGR01189 | 198 | ccmA heme ABC exporter, ATP-binding protein CcmA. | 99.8 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 99.8 | |
| TIGR02857 | 529 | CydD thiol reductant ABC exporter, CydD subunit. U | 99.8 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 99.8 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 99.8 | |
| PRK13540 | 200 | cytochrome c biogenesis protein CcmA; Provisional | 99.8 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 99.8 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 99.8 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.8 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 99.8 | |
| cd03228 | 171 | ABCC_MRP_Like The MRP (Mutidrug Resistance Protein | 99.79 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 99.79 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 99.79 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 99.79 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 99.79 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 99.79 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 99.79 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 99.79 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 99.79 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 99.79 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.79 | |
| cd01857 | 141 | HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t | 99.79 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 99.79 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 99.79 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 99.79 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.79 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 99.79 | |
| TIGR01166 | 190 | cbiO cobalt transport protein ATP-binding subunit. | 99.79 | |
| TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC tra | 99.79 | |
| cd03217 | 200 | ABC_FeS_Assembly ABC-type transport system involve | 99.79 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 99.79 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 99.79 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 99.79 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 99.79 | |
| COG4598 | 256 | HisP ABC-type histidine transport system, ATPase c | 99.79 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 99.79 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 99.79 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 99.79 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 99.79 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 99.79 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 99.79 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.79 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 99.79 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 99.79 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 99.79 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.79 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.79 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 99.79 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.78 | |
| COG4525 | 259 | TauB ABC-type taurine transport system, ATPase com | 99.78 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 99.78 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 99.78 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 99.78 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 99.78 | |
| cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in | 99.78 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 99.78 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 99.78 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 99.78 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 99.78 | |
| cd03215 | 182 | ABC_Carb_Monos_II This family represents domain II | 99.78 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 99.78 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 99.78 | |
| PRK13543 | 214 | cytochrome c biogenesis protein CcmA; Provisional | 99.78 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 99.78 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.77 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 99.77 | |
| TIGR02982 | 220 | heterocyst_DevA ABC exporter ATP-binding subunit, | 99.77 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 99.77 | |
| cd03213 | 194 | ABCG_EPDR ABCG transporters are involved in eye pi | 99.77 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 99.77 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.77 | |
| cd03369 | 207 | ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty | 99.77 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 99.77 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 99.77 | |
| COG4604 | 252 | CeuD ABC-type enterochelin transport system, ATPas | 99.77 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 99.77 | |
| TIGR02204 | 576 | MsbA_rel ABC transporter, permease/ATP-binding pro | 99.77 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.77 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 99.77 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 99.77 | |
| TIGR01194 | 555 | cyc_pep_trnsptr cyclic peptide transporter. This m | 99.77 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 99.77 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 99.77 | |
| PRK13539 | 207 | cytochrome c biogenesis protein CcmA; Provisional | 99.77 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 99.76 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.76 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.76 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 99.76 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 99.76 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 99.76 | |
| COG4181 | 228 | Predicted ABC-type transport system involved in ly | 99.76 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.76 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 99.76 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 99.76 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 99.76 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.76 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 99.76 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 99.76 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 99.76 | |
| PRK15056 | 272 | manganese/iron transporter ATP-binding protein; Pr | 99.76 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 99.76 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.76 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 99.76 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 99.76 | |
| cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. | 99.76 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 99.76 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.76 | |
| PRK10522 | 547 | multidrug transporter membrane component/ATP-bindi | 99.76 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 99.76 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 99.76 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 99.76 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 99.76 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 99.76 | |
| PRK09580 | 248 | sufC cysteine desulfurase ATPase component; Review | 99.75 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 99.75 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 99.75 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 99.75 | |
| cd03232 | 192 | ABC_PDR_domain2 The pleiotropic drug resistance-li | 99.75 | |
| cd03253 | 236 | ABCC_ATM1_transporter ATM1 is an ABC transporter t | 99.75 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 99.75 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.75 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.75 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 99.75 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 99.75 | |
| cd03222 | 177 | ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi | 99.75 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 99.75 | |
| TIGR01192 | 585 | chvA glucan exporter ATP-binding protein. This mod | 99.75 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 99.75 | |
| COG4152 | 300 | ABC-type uncharacterized transport system, ATPase | 99.75 | |
| PRK10789 | 569 | putative multidrug transporter membrane\ATP-bindin | 99.75 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 99.75 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.75 | |
| TIGR02323 | 253 | CP_lyasePhnK phosphonate C-P lyase system protein | 99.75 | |
| cd01849 | 155 | YlqF_related_GTPase YlqF-related GTPases. These pr | 99.75 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 99.75 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 99.75 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 99.75 | |
| cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Anti | 99.75 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 99.74 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 99.74 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 99.74 | |
| cd03221 | 144 | ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is | 99.74 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 99.74 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 99.74 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 99.74 | |
| cd03223 | 166 | ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass | 99.74 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 99.74 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 99.74 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 99.74 | |
| cd03288 | 257 | ABCC_SUR2 The SUR domain 2. The sulfonylurea recep | 99.74 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 99.74 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 99.74 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 99.74 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 99.74 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 99.74 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 99.73 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 99.73 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 99.73 | |
| cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is | 99.73 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 99.73 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 99.73 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 99.73 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 99.73 | |
| CHL00131 | 252 | ycf16 sulfate ABC transporter protein; Validated | 99.73 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 99.73 | |
| PRK10419 | 268 | nikE nickel transporter ATP-binding protein NikE; | 99.73 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 99.73 | |
| PRK13541 | 195 | cytochrome c biogenesis protein CcmA; Provisional | 99.73 | |
| COG4559 | 259 | ABC-type hemin transport system, ATPase component | 99.73 | |
| cd03250 | 204 | ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. | 99.73 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 99.73 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 99.73 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 99.73 | |
| PRK09544 | 251 | znuC high-affinity zinc transporter ATPase; Review | 99.73 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 99.72 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 99.72 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 99.72 | |
| cd03290 | 218 | ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec | 99.72 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 99.72 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 99.72 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 99.72 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 99.72 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 99.72 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 99.72 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 99.72 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 99.72 | |
| PRK14254 | 285 | phosphate ABC transporter ATP-binding protein; Pro | 99.72 | |
| PRK14263 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 99.72 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 99.72 | |
| COG0396 | 251 | sufC Cysteine desulfurase activator ATPase [Posttr | 99.72 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 99.72 | |
| TIGR02324 | 224 | CP_lyasePhnL phosphonate C-P lyase system protein | 99.72 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 99.72 | |
| PF00005 | 137 | ABC_tran: ABC transporter This structure is on hol | 99.71 | |
| COG4619 | 223 | ABC-type uncharacterized transport system, ATPase | 99.71 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 99.71 | |
| COG4148 | 352 | ModC ABC-type molybdate transport system, ATPase c | 99.71 | |
| COG5265 | 497 | ATM1 ABC-type transport system involved in Fe-S cl | 99.71 | |
| cd00267 | 157 | ABC_ATPase ABC (ATP-binding cassette) transporter | 99.71 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 99.71 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 99.71 | |
| COG4167 | 267 | SapF ABC-type antimicrobial peptide transport syst | 99.71 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 99.71 | |
| PRK14246 | 257 | phosphate ABC transporter ATP-binding protein; Pro | 99.71 | |
| PRK14266 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 99.7 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 99.7 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 99.7 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 99.7 | |
| COG4136 | 213 | ABC-type uncharacterized transport system, ATPase | 99.7 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 99.7 | |
| PRK14258 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 99.7 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 99.7 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 99.7 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 99.69 | |
| TIGR02770 | 230 | nickel_nikD nickel import ATP-binding protein NikD | 99.69 | |
| TIGR03596 | 276 | GTPase_YlqF ribosome biogenesis GTP-binding protei | 99.69 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 99.69 | |
| COG1101 | 263 | PhnK ABC-type uncharacterized transport system, AT | 99.69 | |
| cd03220 | 224 | ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo | 99.69 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 99.69 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 99.69 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 99.68 | |
| COG4161 | 242 | ArtP ABC-type arginine transport system, ATPase co | 99.68 | |
| PRK03695 | 248 | vitamin B12-transporter ATPase; Provisional | 99.68 | |
| PRK14264 | 305 | phosphate ABC transporter ATP-binding protein; Pro | 99.68 | |
| cd01859 | 156 | MJ1464 MJ1464. This family represents archaeal GTP | 99.68 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 99.68 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 99.67 | |
| PRK14252 | 265 | phosphate ABC transporter ATP-binding protein; Pro | 99.67 | |
| cd01856 | 171 | YlqF YlqF. Proteins of the YlqF family contain all | 99.67 | |
| PRK09563 | 287 | rbgA GTPase YlqF; Reviewed | 99.66 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 99.66 | |
| COG4608 | 268 | AppF ABC-type oligopeptide transport system, ATPas | 99.66 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 99.66 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 99.66 | |
| PLN03211 | 659 | ABC transporter G-25; Provisional | 99.66 | |
| cd03237 | 246 | ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o | 99.65 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 99.65 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 99.65 | |
| cd03236 | 255 | ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o | 99.65 | |
| COG1134 | 249 | TagH ABC-type polysaccharide/polyol phosphate tran | 99.64 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 99.64 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 99.64 | |
| TIGR03771 | 223 | anch_rpt_ABC anchored repeat-type ABC transporter, | 99.64 | |
| cd03291 | 282 | ABCC_CFTR1 The CFTR subfamily domain 1. The cystic | 99.64 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 99.64 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 99.64 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 99.63 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 99.63 | |
| PRK10535 | 648 | macrolide transporter ATP-binding /permease protei | 99.63 | |
| COG1119 | 257 | ModF ABC-type molybdenum transport system, ATPase | 99.62 | |
| cd01855 | 190 | YqeH YqeH. YqeH is an essential GTP-binding protei | 99.62 | |
| COG4586 | 325 | ABC-type uncharacterized transport system, ATPase | 99.61 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 99.61 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 99.61 | |
| TIGR01187 | 325 | potA spermidine/putrescine ABC transporter ATP-bin | 99.61 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 99.61 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 99.61 | |
| COG1161 | 322 | Predicted GTPases [General function prediction onl | 99.61 | |
| cd04178 | 172 | Nucleostemin_like Nucleostemin-like. Nucleostemin | 99.6 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 99.6 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 99.6 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 99.59 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 99.59 | |
| TIGR00954 | 659 | 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA | 99.59 | |
| PRK13546 | 264 | teichoic acids export protein ATP-binding subunit; | 99.59 | |
| KOG1424 | 562 | consensus Predicted GTP-binding protein MMR1 [Gene | 99.58 | |
| PRK13545 | 549 | tagH teichoic acids export protein ATP-binding sub | 99.58 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 99.58 | |
| cd03238 | 176 | ABC_UvrA The excision repair protein UvrA; Nucleot | 99.58 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 99.57 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 99.57 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 99.57 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 99.56 | |
| PRK15177 | 213 | Vi polysaccharide export ATP-binding protein VexC; | 99.56 | |
| COG4615 | 546 | PvdE ABC-type siderophore export system, fused ATP | 99.56 | |
| TIGR00955 | 617 | 3a01204 The Eye Pigment Precursor Transporter (EPP | 99.55 | |
| COG4107 | 258 | PhnK ABC-type phosphonate transport system, ATPase | 99.55 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 99.55 | |
| COG4674 | 249 | Uncharacterized ABC-type transport system, ATPase | 99.55 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 99.54 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 99.53 | |
| PRK13796 | 365 | GTPase YqeH; Provisional | 99.53 | |
| TIGR03597 | 360 | GTPase_YqeH ribosome biogenesis GTPase YqeH. This | 99.52 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 99.52 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 99.51 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 99.49 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 99.49 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 99.49 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 99.49 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 99.48 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 99.48 | |
| COG4133 | 209 | CcmA ABC-type transport system involved in cytochr | 99.47 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 99.46 | |
| KOG0061 | 613 | consensus Transporter, ABC superfamily (Breast can | 99.46 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 99.41 | |
| COG4778 | 235 | PhnL ABC-type phosphonate transport system, ATPase | 99.4 | |
| cd03278 | 197 | ABC_SMC_barmotin Barmotin is a tight junction-asso | 99.39 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 99.37 | |
| KOG2484 | 435 | consensus GTPase [General function prediction only | 99.36 | |
| COG1160 | 444 | Predicted GTPases [General function prediction onl | 99.35 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 99.35 | |
| KOG0059 | 885 | consensus Lipid exporter ABCA1 and related protein | 99.3 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 99.29 | |
| COG4178 | 604 | ABC-type uncharacterized transport system, permeas | 99.28 | |
| KOG2423 | 572 | consensus Nucleolar GTPase [General function predi | 99.25 | |
| cd03272 | 243 | ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein | 99.24 | |
| COG4138 | 248 | BtuD ABC-type cobalamin transport system, ATPase c | 99.22 | |
| cd03279 | 213 | ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex | 99.17 | |
| cd03270 | 226 | ABC_UvrA_I The excision repair protein UvrA domain | 99.15 | |
| KOG0060 | 659 | consensus Long-chain acyl-CoA transporter, ABC sup | 99.15 | |
| PRK00093 | 435 | GTP-binding protein Der; Reviewed | 99.14 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 99.11 | |
| TIGR03594 | 429 | GTPase_EngA ribosome-associated GTPase EngA. EngA | 99.1 | |
| KOG2485 | 335 | consensus Conserved ATP/GTP binding protein [Gener | 99.09 | |
| cd04466 | 68 | S1_YloQ_GTPase S1_YloQ_GTPase: YloQ GTase family ( | 99.09 | |
| PRK03003 | 472 | GTP-binding protein Der; Reviewed | 99.07 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 99.06 | |
| cd03240 | 204 | ABC_Rad50 The catalytic domains of Rad50 are simil | 99.04 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 99.03 | |
| cd03273 | 251 | ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein | 99.0 | |
| KOG0064 | 728 | consensus Peroxisomal long-chain acyl-CoA transpor | 98.99 | |
| PRK09518 | 712 | bifunctional cytidylate kinase/GTPase Der; Reviewe | 98.97 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 98.97 | |
| cd03274 | 212 | ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC protein | 98.94 | |
| cd03271 | 261 | ABC_UvrA_II The excision repair protein UvrA domai | 98.85 | |
| cd04451 | 64 | S1_IF1 S1_IF1: Translation Initiation Factor IF1, | 98.79 | |
| COG0218 | 200 | Predicted GTPase [General function prediction only | 98.79 | |
| cd00820 | 107 | PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC | 98.78 | |
| PRK00276 | 72 | infA translation initiation factor IF-1; Validated | 98.75 | |
| COG2401 | 593 | ABC-type ATPase fused to a predicted acetyltransfe | 98.72 | |
| CHL00010 | 78 | infA translation initiation factor 1 | 98.71 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 98.69 | |
| cd03276 | 198 | ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC protein | 98.68 | |
| TIGR02858 | 270 | spore_III_AA stage III sporulation protein AA. Mem | 98.68 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 98.65 | |
| COG4170 | 330 | SapD ABC-type antimicrobial peptide transport syst | 98.64 | |
| cd03275 | 247 | ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC protein | 98.63 | |
| TIGR03238 | 504 | dnd_assoc_3 dnd system-associated protein 3. cereu | 98.63 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 98.61 | |
| PF01926 | 116 | MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I | 98.57 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 98.54 | |
| COG1159 | 298 | Era GTPase [General function prediction only] | 98.54 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 98.52 | |
| KOG2355 | 291 | consensus Predicted ABC-type transport, ATPase com | 98.48 | |
| PF02421 | 156 | FeoB_N: Ferrous iron transport protein B; InterPro | 98.38 | |
| cd03280 | 200 | ABC_MutS2 MutS2 homologs in bacteria and eukaryote | 98.35 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 98.34 | |
| cd01130 | 186 | VirB11-like_ATPase Type IV secretory pathway compo | 98.33 | |
| KOG0063 | 592 | consensus RNAse L inhibitor, ABC superfamily [RNA | 98.31 | |
| cd01853 | 249 | Toc34_like Toc34-like (Translocon at the Outer-env | 98.31 | |
| cd04104 | 197 | p47_IIGP_like p47 (47-kDa) family. The p47 GTPase | 98.29 | |
| TIGR03598 | 179 | GTPase_YsxC ribosome biogenesis GTP-binding protei | 98.27 | |
| PRK00454 | 196 | engB GTP-binding protein YsxC; Reviewed | 98.27 | |
| TIGR00436 | 270 | era GTP-binding protein Era. Era is an essential G | 98.26 | |
| COG0486 | 454 | ThdF Predicted GTPase [General function prediction | 98.25 | |
| cd01852 | 196 | AIG1 AIG1 (avrRpt2-induced gene 1). This represent | 98.25 | |
| cd01876 | 170 | YihA_EngB The YihA (EngB) subfamily. This subfamil | 98.23 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 98.23 | |
| KOG1191 | 531 | consensus Mitochondrial GTPase [Translation, ribos | 98.2 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 98.19 | |
| PRK00089 | 292 | era GTPase Era; Reviewed | 98.16 | |
| PRK15494 | 339 | era GTPase Era; Provisional | 98.14 | |
| cd03239 | 178 | ABC_SMC_head The structural maintenance of chromos | 98.14 | |
| cd03277 | 213 | ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC protein | 98.13 | |
| cd03227 | 162 | ABC_Class2 ABC-type Class 2 contains systems invol | 98.12 | |
| cd04164 | 157 | trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein | 98.11 | |
| PF04548 | 212 | AIG1: AIG1 family; InterPro: IPR006703 This entry | 98.02 | |
| PRK00300 | 205 | gmk guanylate kinase; Provisional | 98.02 | |
| cd04163 | 168 | Era Era subfamily. Era (E. coli Ras-like protein) | 98.0 | |
| COG1160 | 444 | Predicted GTPases [General function prediction onl | 98.0 | |
| TIGR00991 | 313 | 3a0901s02IAP34 GTP-binding protein (Chloroplast En | 97.98 | |
| PRK10078 | 186 | ribose 1,5-bisphosphokinase; Provisional | 97.97 | |
| cd01898 | 170 | Obg Obg subfamily. The Obg nucleotide binding prot | 97.96 | |
| PRK12298 | 390 | obgE GTPase CgtA; Reviewed | 97.88 | |
| cd04155 | 173 | Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f | 97.87 | |
| PRK04213 | 201 | GTP-binding protein; Provisional | 97.87 | |
| cd04171 | 164 | SelB SelB subfamily. SelB is an elongation factor | 97.87 | |
| PF10662 | 143 | PduV-EutP: Ethanolamine utilisation - propanediol | 97.86 | |
| PRK07721 | 438 | fliI flagellum-specific ATP synthase; Validated | 97.85 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 97.85 | |
| PRK06002 | 450 | fliI flagellum-specific ATP synthase; Validated | 97.85 | |
| PF13555 | 62 | AAA_29: P-loop containing region of AAA domain | 97.85 | |
| KOG1423 | 379 | consensus Ras-like GTPase ERA [Cell cycle control, | 97.84 | |
| cd01894 | 157 | EngA1 EngA1 subfamily. This CD represents the firs | 97.84 | |
| PRK10416 | 318 | signal recognition particle-docking protein FtsY; | 97.83 | |
| TIGR00993 | 763 | 3a0901s04IAP86 chloroplast protein import componen | 97.83 | |
| cd03241 | 276 | ABC_RecN RecN ATPase involved in DNA repair; ABC ( | 97.83 | |
| cd01881 | 176 | Obg_like The Obg-like subfamily consists of five w | 97.83 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 97.82 | |
| cd00879 | 190 | Sar1 Sar1 subfamily. Sar1 is an essential componen | 97.82 | |
| COG1084 | 346 | Predicted GTPase [General function prediction only | 97.81 | |
| cd01878 | 204 | HflX HflX subfamily. A distinct conserved domain w | 97.81 | |
| PRK09825 | 176 | idnK D-gluconate kinase; Provisional | 97.79 | |
| PF00735 | 281 | Septin: Septin; InterPro: IPR000038 Septins consti | 97.78 | |
| cd01897 | 168 | NOG NOG1 is a nucleolar GTP-binding protein presen | 97.77 | |
| cd01850 | 276 | CDC_Septin CDC/Septin. Septins are a conserved fam | 97.76 | |
| TIGR00450 | 442 | mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE | 97.76 | |
| PF05049 | 376 | IIGP: Interferon-inducible GTPase (IIGP); InterPro | 97.74 | |
| cd01896 | 233 | DRG The developmentally regulated GTP-binding prot | 97.72 | |
| TIGR02788 | 308 | VirB11 P-type DNA transfer ATPase VirB11. The VirB | 97.72 | |
| cd04159 | 159 | Arl10_like Arl10-like subfamily. Arl9/Arl10 was id | 97.72 | |
| PRK09601 | 364 | GTP-binding protein YchF; Reviewed | 97.72 | |
| PRK09862 | 506 | putative ATP-dependent protease; Provisional | 97.71 | |
| TIGR00008 | 68 | infA translation initiation factor IF-1. This fami | 97.7 | |
| PRK07196 | 434 | fliI flagellum-specific ATP synthase; Validated | 97.68 | |
| PRK09270 | 229 | nucleoside triphosphate hydrolase domain-containin | 97.68 | |
| cd01887 | 168 | IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo | 97.66 | |
| cd01900 | 274 | YchF YchF subfamily. YchF is a member of the Obg f | 97.64 | |
| PTZ00258 | 390 | GTP-binding protein; Provisional | 97.64 | |
| cd01851 | 224 | GBP Guanylate-binding protein (GBP), N-terminal do | 97.63 |
| >COG1162 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-57 Score=425.84 Aligned_cols=282 Identities=39% Similarity=0.663 Sum_probs=257.1
Q ss_pred CeeEEEecCCCCceeccCC--CCcEEEEEEcccccccCCCcccCcEEEEceecccCCceEEeeecccccccccccccccc
Q 020346 1 MRVIVQQSEPSRTSDCNDK--TGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVD 78 (327)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~vGD~V~~~~~~~~~~~~~i~~i~~R~~~l~r~~~anvD 78 (327)
|.|+|.++..|+|++..+. +++.+.|..||+|++....++|||||.++... ..|+|++++||+|.|.||.+||+|
T Consensus 5 ~~g~v~~~~~g~y~v~~~~~~~~~~~~~~~r~~lr~~~~~~vVGD~V~~~~~~---~~g~I~~i~~Rkn~L~Rp~v~n~d 81 (301)
T COG1162 5 KRGRVVKVDAGFYGVRLEEEVDGEVYRCRARGNLRKKDLKPVVGDRVVFEDEN---NNGVIEKILPRKNVLIRPPVANND 81 (301)
T ss_pred cCcEEEEeeCCEEEEEEccccccceeeeeeecceeccCccccccCeEEEecCC---CcceEEEEecccCceeCCcccccc
Confidence 5789999999999776442 36689999999999988999999999998643 228999999999999999999999
Q ss_pred EEEEEeecCCCCCChHHHHHHHHHHHhcCCCEEEEeecCCCCcHHHHH--HHHhhhhhcCCceeeccCcchhhHHHHHhh
Q 020346 79 HLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLN--TWKSRLHTWGYEPLFCSVESKLGLDSLLQR 156 (327)
Q Consensus 79 ~lliv~~~~~p~~~~~~l~r~L~~a~~~~~~~~ivlnK~Dl~~~~~~~--~~~~~~~~~~~~~~~~s~~~~~~l~~l~~~ 156 (327)
++++|+++..|.+++.+|+|||+.|++.++.|++|+||+||.+++... .....+.++||+++.+|..+..+++.+...
T Consensus 82 ~~iiIvs~~~P~~~~~~ldR~Lv~ae~~gi~pvIvlnK~DL~~~~~~~~~~~~~~y~~~gy~v~~~s~~~~~~~~~l~~~ 161 (301)
T COG1162 82 QAIIVVSLVDPDFNTNLLDRYLVLAEAGGIEPVIVLNKIDLLDDEEAAVKELLREYEDIGYPVLFVSAKNGDGLEELAEL 161 (301)
T ss_pred eEEEEEeccCCCCCHHHHHHHHHHHHHcCCcEEEEEEccccCcchHHHHHHHHHHHHhCCeeEEEecCcCcccHHHHHHH
Confidence 999999999999999999999999999999999999999999876554 466778889999999999999999999999
Q ss_pred cCCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcceeeEEEEEEEccCCCe
Q 020346 157 LRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGY 236 (327)
Q Consensus 157 l~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~tt~~i~~v~q~~~~~ 236 (327)
++|++++|+|+||||||||+|.|.+.. .+.|+++|.+.++|||||++..+++.+.+++
T Consensus 162 l~~~~svl~GqSGVGKSSLiN~L~p~~----------------------~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG~ 219 (301)
T COG1162 162 LAGKITVLLGQSGVGKSTLINALLPEL----------------------NQKTGEISEKLGRGRHTTTHVELFPLPGGGW 219 (301)
T ss_pred hcCCeEEEECCCCCcHHHHHHhhCchh----------------------hhhhhhhcccCCCCCCccceEEEEEcCCCCE
Confidence 999999999999999999999999944 3789999999999999999999999988999
Q ss_pred EEeCcccCCccccccCHhHHhhhhHHHHHhcCccccccccccccccccCCceEEcc-------cHHHHHHHHHHHHHHHH
Q 020346 237 LADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG-------DWERYQYYFQLLDEIRI 309 (327)
Q Consensus 237 i~Dtpg~~~~~l~~~~~~~l~~~~~~~~~~LSgGq~q~~~~~~~~h~~ep~~~v~~-------~~~r~~~~~~ll~e~~~ 309 (327)
++|||||+.+.++.+..+++...|+|+..+ ...|+|.+|+|.+||+|+|+. +++||+.|+++++|+..
T Consensus 220 iiDTPGf~~~~l~~~~~e~l~~~F~ef~~~-----~~~CkFr~C~H~~EPgCav~~av~~g~i~~~Ry~~Y~kll~el~~ 294 (301)
T COG1162 220 IIDTPGFRSLGLAHLEPEDLVQAFPEFAEL-----ARQCKFRDCTHTHEPGCAVKAAVEEGEIAPERYENYLKLLDELSG 294 (301)
T ss_pred EEeCCCCCccCcccCCHHHHHHHhHHHHHH-----hcCCCCCCCCCCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999998 678999999999999999965 45799999999999986
Q ss_pred hHH
Q 020346 310 REE 312 (327)
Q Consensus 310 ~~~ 312 (327)
..+
T Consensus 295 ~~~ 297 (301)
T COG1162 295 NRR 297 (301)
T ss_pred hhh
Confidence 543
|
|
| >PRK12289 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-57 Score=436.06 Aligned_cols=298 Identities=48% Similarity=0.854 Sum_probs=262.3
Q ss_pred CeeEEEecCCCCceeccCCC-----CcEEEEEEcccccccCCCcccCcEEEEceecccCCceEEeeeccccccccccccc
Q 020346 1 MRVIVQQSEPSRTSDCNDKT-----GVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVA 75 (327)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~vGD~V~~~~~~~~~~~~~i~~i~~R~~~l~r~~~a 75 (327)
|.|+|++...|+|+|..+.+ +..+.|..+|++++.+..++|||||.++..++.+..++|++|+||+|.|.||.+|
T Consensus 9 ~~g~V~~~~~~~y~V~~~~~~~~~~~~~~~~~~r~~lk~~~~~~~vGD~V~~~~~~~~~~~~~I~~vlpR~~~L~R~~~a 88 (352)
T PRK12289 9 LLGTVVAVQANFYRVQLDEPQNLNPPSLLLCTRRTRLKKIGQQVMVGDRVIVEEPDWQGQRGAIAEVLPRKTELDRPPVA 88 (352)
T ss_pred ccEEEEEEECCEEEEEECCCcccCcceEEEEEcccccccCCCCcccCCEEEEeecCCCCCceEEEEEeccccceechhhh
Confidence 68999999988888875422 2579999999998777779999999998766555679999999999999999999
Q ss_pred cccEEEEEeecCCCCCChHHHHHHHHHHHhcCCCEEEEeecCCCCcHHHHHHHHhhhhhcCCceeeccCcchhhHHHHHh
Q 020346 76 NVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQ 155 (327)
Q Consensus 76 nvD~lliv~~~~~p~~~~~~l~r~L~~a~~~~~~~~ivlnK~Dl~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~l~~ 155 (327)
|+|++++|+++..|.+++..|++||..++..++|+++|+||+||+++.+...|...+..++|+++.+|+.+..+++.|..
T Consensus 89 NvD~vLlV~d~~~p~~~~~~LdR~L~~a~~~~ip~ILVlNK~DLv~~~~~~~~~~~~~~~g~~v~~iSA~tg~GI~eL~~ 168 (352)
T PRK12289 89 NADQILLVFALAEPPLDPWQLSRFLVKAESTGLEIVLCLNKADLVSPTEQQQWQDRLQQWGYQPLFISVETGIGLEALLE 168 (352)
T ss_pred cCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEchhcCChHHHHHHHHHHHhcCCeEEEEEcCCCCCHHHHhh
Confidence 99999999999889899989999999999999999999999999987766778788888999999999999999999988
Q ss_pred hcCCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcceeeEEEEEEEccCCC
Q 020346 156 RLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGG 235 (327)
Q Consensus 156 ~l~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~tt~~i~~v~q~~~~ 235 (327)
.+.+++++|+|+||||||||||.|++.. ...++.++.+.++|+|||++..+++.+.++
T Consensus 169 ~L~~ki~v~iG~SgVGKSSLIN~L~~~~----------------------~~~t~~vs~~~~rGrHTT~~~~l~~l~~g~ 226 (352)
T PRK12289 169 QLRNKITVVAGPSGVGKSSLINRLIPDV----------------------ELRVGKVSGKLGRGRHTTRHVELFELPNGG 226 (352)
T ss_pred hhccceEEEEeCCCCCHHHHHHHHcCcc----------------------ccccccccCCCCCCCCcCceeEEEECCCCc
Confidence 8889999999999999999999999854 256778888899999999999999998788
Q ss_pred eEEeCcccCCccccccCHhHHhhhhHHHHHhcCccccccccccccccccCCceEEcccHHHHHHHHHHHHHHHHhHHHhh
Q 020346 236 YLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWERYQYYFQLLDEIRIREEFQL 315 (327)
Q Consensus 236 ~i~Dtpg~~~~~l~~~~~~~l~~~~~~~~~~LSgGq~q~~~~~~~~h~~ep~~~v~~~~~r~~~~~~ll~e~~~~~~~~~ 315 (327)
+++|||||+.+.+ .++..++...||++..+++ ...|+|.+|+|.+||||+|+++++||++|++|++|+.......+
T Consensus 227 ~liDTPG~~~~~l-~~~~~~l~~~F~e~~~~~~---~~~CrF~dC~H~~EPgCaV~~~~~Ry~~Y~~l~~e~~~~~~~~~ 302 (352)
T PRK12289 227 LLADTPGFNQPDL-DCSPRELAHYFPEARQRLA---QGNCQFNDCLHRDEPNCAVRGDWERYEHYLEFLEEAIAQQEQLQ 302 (352)
T ss_pred EEEeCCCcccccc-ccCHHHHHhhHHHHHHhHh---hCceEccCCccCCCCChhhhhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999998 5788899999999988742 37899999999999999999999999999999999877655544
Q ss_pred hhhccccCCCC
Q 020346 316 RTFGTKREGDV 326 (327)
Q Consensus 316 ~~~~~~~~~~~ 326 (327)
+ +++++.++
T Consensus 303 ~--~~~~~~~~ 311 (352)
T PRK12289 303 Q--SADEESTL 311 (352)
T ss_pred c--Cccccccc
Confidence 3 55555544
|
|
| >PRK12288 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-54 Score=412.84 Aligned_cols=277 Identities=31% Similarity=0.510 Sum_probs=244.2
Q ss_pred CeeEEEecCCCCceeccCCCCcEEEEEEcccccccCCCcccCcEEEEceecccC--CceEEeeeccccccccccc-----
Q 020346 1 MRVIVQQSEPSRTSDCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVD--RRGMIENVFQRSTEILDPP----- 73 (327)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vGD~V~~~~~~~~~--~~~~i~~i~~R~~~l~r~~----- 73 (327)
|.|+|++.+.|+|+|..+ +|..+.|.++|+++ .|+|||||.++..+... ..++|++|+||+|.|.||.
T Consensus 40 ~~g~Vi~~~~~~~~v~~~-~g~~~~~~~~g~~~----~~~vGD~V~~~~~~~~~~~~~~~I~~il~R~n~L~R~~~~~~~ 114 (347)
T PRK12288 40 QEGIVISRFGQHADVEAA-DGEVHRCNIRRTIR----SLVTGDRVVWRPGKEALEGVSGVVEAVHPRTSVLTRPDYYDGV 114 (347)
T ss_pred cceEEEEEECCEEEEEeC-CCcEEEEEecccCC----CCCCCcEEEEEeCCCcccccceEEEEEecccceEECCCccccc
Confidence 579999999888888754 77889999999884 39999999998542111 1389999999999999875
Q ss_pred ---cccccEEEEEeecCCCCCChHHHHHHHHHHHhcCCCEEEEeecCCCCcHHH---HHHHHhhhhhcCCceeeccCcch
Q 020346 74 ---VANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEV---LNTWKSRLHTWGYEPLFCSVESK 147 (327)
Q Consensus 74 ---~anvD~lliv~~~~~p~~~~~~l~r~L~~a~~~~~~~~ivlnK~Dl~~~~~---~~~~~~~~~~~~~~~~~~s~~~~ 147 (327)
|||+|++++|++.. |.+++..+++||..++..++++++|+||+||.++.+ ...+...+..++++++.+|+.+.
T Consensus 115 q~iaANvD~vlIV~s~~-p~~s~~~Ldr~L~~a~~~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~v~~vSA~tg 193 (347)
T PRK12288 115 KPIAANIDQIVIVSAVL-PELSLNIIDRYLVACETLGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYRVLMVSSHTG 193 (347)
T ss_pred ceEEEEccEEEEEEeCC-CCCCHHHHHHHHHHHHhcCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 79999999999975 899999999999999999999999999999987542 34556667778999999999999
Q ss_pred hhHHHHHhhcCCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcceeeEEEE
Q 020346 148 LGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVS 227 (327)
Q Consensus 148 ~~l~~l~~~l~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~tt~~i~ 227 (327)
.+++.|...+.+++++|+|+||||||||||+|+|.. ...+++++.+.++|+|||++..
T Consensus 194 ~GideL~~~L~~ki~~~vG~sgVGKSTLiN~Ll~~~----------------------~~~t~~is~~~~rGrHTT~~~~ 251 (347)
T PRK12288 194 EGLEELEAALTGRISIFVGQSGVGKSSLINALLPEA----------------------EILVGDVSDNSGLGQHTTTAAR 251 (347)
T ss_pred cCHHHHHHHHhhCCEEEECCCCCCHHHHHHHhcccc----------------------ceeeccccCcCCCCcCceeeEE
Confidence 999999888889999999999999999999999954 2578889988999999999999
Q ss_pred EEEccCCCeEEeCcccCCccccccCHhHHhhhhHHHHHhcCccccccccccccccccCCceEEcc-------cHHHHHHH
Q 020346 228 LLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG-------DWERYQYY 300 (327)
Q Consensus 228 ~v~q~~~~~i~Dtpg~~~~~l~~~~~~~l~~~~~~~~~~LSgGq~q~~~~~~~~h~~ep~~~v~~-------~~~r~~~~ 300 (327)
+++.+.++.++|||||+.+.++.++.+++...||++.++ .+.|+|.+|.|.+||||+|+. ++.||++|
T Consensus 252 l~~l~~~~~liDTPGir~~~l~~~~~~~l~~~F~ei~~~-----~~~CrF~dC~H~~EpgCaV~~Av~~g~i~~~Ry~~Y 326 (347)
T PRK12288 252 LYHFPHGGDLIDSPGVREFGLWHLEPEQVTQGFVEFRDY-----LGTCKFRDCKHDDDPGCALREAVEEGKIAETRFENY 326 (347)
T ss_pred EEEecCCCEEEECCCCCcccCCCCCHHHHHHhhHHHHHH-----hcCCCCCCCccCCCCCChHHHHHHcCCCCHHHHHHH
Confidence 999987889999999999999988889999999999998 788999999999999999965 46799999
Q ss_pred HHHHHHHHHh
Q 020346 301 FQLLDEIRIR 310 (327)
Q Consensus 301 ~~ll~e~~~~ 310 (327)
++|++|+.+.
T Consensus 327 ~~l~~e~~~~ 336 (347)
T PRK12288 327 HRILESMAEV 336 (347)
T ss_pred HHHHHHHHhh
Confidence 9999999775
|
|
| >PRK00098 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-50 Score=383.08 Aligned_cols=280 Identities=38% Similarity=0.621 Sum_probs=245.0
Q ss_pred CeeEEEecCCCCceeccCCCCcEEEEEEcccccccCCCcccCcEEEEceecccCCceEEeeecccccccccccc------
Q 020346 1 MRVIVQQSEPSRTSDCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPV------ 74 (327)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vGD~V~~~~~~~~~~~~~i~~i~~R~~~l~r~~~------ 74 (327)
|+|+|++.+.|+|+|..+ +|.++.|.+||++++.+..|+|||||.++.. .++.|+|++++||+|.+.||.+
T Consensus 1 ~~g~v~~~~~~~~~v~~~-~~~~~~~~~~g~~~~~~~~~~vGD~V~~~~~--~~~~g~i~~i~~R~~~l~R~~~~~~q~i 77 (298)
T PRK00098 1 MEGLIIKALGGFYYVESE-DGQVYQCRARGKFRKKTNTPAVGDRVEFSAE--NNDEGVILEIHERKNLLVRPPIFKSKLI 77 (298)
T ss_pred CeEEEEEEECCEEEEEEC-CCCEEEEEeccccccCCCCcCCCCEEEEEEC--CCCcEEEEEEeCCCceEECCCCccccce
Confidence 899999999777777643 5779999999999876778999999999753 2467899999999999999886
Q ss_pred -ccccEEEEEeecCCCCCChHHHHHHHHHHHhcCCCEEEEeecCCCCc-HHHHHHHHhhhhhcCCceeeccCcchhhHHH
Q 020346 75 -ANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVD-EEVLNTWKSRLHTWGYEPLFCSVESKLGLDS 152 (327)
Q Consensus 75 -anvD~lliv~~~~~p~~~~~~l~r~L~~a~~~~~~~~ivlnK~Dl~~-~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~ 152 (327)
||+|++++|+++..|.++...+++++..+...++|+++|+||+||.+ ......+...++.++++++.+|..+..+++.
T Consensus 78 aaniD~vllV~d~~~p~~~~~~idr~L~~~~~~~ip~iIVlNK~DL~~~~~~~~~~~~~~~~~g~~v~~vSA~~g~gi~~ 157 (298)
T PRK00098 78 AANVDQAVLVFAAKEPDFSTDLLDRFLVLAEANGIKPIIVLNKIDLLDDLEEARELLALYRAIGYDVLELSAKEGEGLDE 157 (298)
T ss_pred eecCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEhHHcCCCHHHHHHHHHHHHHCCCeEEEEeCCCCccHHH
Confidence 99999999999988988888899999999999999999999999973 3344456666777889999999999999999
Q ss_pred HHhhcCCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcceeeEEEEEEEcc
Q 020346 153 LLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLS 232 (327)
Q Consensus 153 l~~~l~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~tt~~i~~v~q~ 232 (327)
+...++|++++|+|+||||||||+|+|+|.. .+ .++.++...++|+|||++..+++.+
T Consensus 158 L~~~l~gk~~~~~G~sgvGKStlin~l~~~~------------~~----------~~g~v~~~~~~G~htT~~~~~~~~~ 215 (298)
T PRK00098 158 LKPLLAGKVTVLAGQSGVGKSTLLNALAPDL------------EL----------KTGEISEALGRGKHTTTHVELYDLP 215 (298)
T ss_pred HHhhccCceEEEECCCCCCHHHHHHHHhCCc------------CC----------CCcceeccCCCCCcccccEEEEEcC
Confidence 9888899999999999999999999999943 23 3455666778999999999999888
Q ss_pred CCCeEEeCcccCCccccccCHhHHhhhhHHHHHhcCccccccccccccccccCCceEEcc-------cHHHHHHHHHHHH
Q 020346 233 GGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG-------DWERYQYYFQLLD 305 (327)
Q Consensus 233 ~~~~i~Dtpg~~~~~l~~~~~~~l~~~~~~~~~~LSgGq~q~~~~~~~~h~~ep~~~v~~-------~~~r~~~~~~ll~ 305 (327)
.+++++||||++...++.++..++...|+++... ...|.|.+|.|.+||+|+|.. ++.||++|++|++
T Consensus 216 ~~~~~~DtpG~~~~~~~~~~~~~~~~~f~~~~~~-----~~~c~f~~c~h~~ep~c~v~~a~~~g~i~~~Ry~~y~~l~~ 290 (298)
T PRK00098 216 GGGLLIDTPGFSSFGLHDLEAEELEHYFPEFRPL-----SGDCKFRNCTHLHEPGCAVKAAVEEGEIAPSRYESYLQILE 290 (298)
T ss_pred CCcEEEECCCcCccCCCCCCHHHHHHHHHHHHHH-----hCCCCCCCCcCCCCCCChHHHHHHcCCCCHHHHHHHHHHHH
Confidence 7889999999999999888889999999999888 678999999999999999964 5679999999999
Q ss_pred HHHHh
Q 020346 306 EIRIR 310 (327)
Q Consensus 306 e~~~~ 310 (327)
|+...
T Consensus 291 e~~~~ 295 (298)
T PRK00098 291 EIENR 295 (298)
T ss_pred HHHhc
Confidence 98663
|
|
| >cd01854 YjeQ_engC YjeQ/EngC | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-50 Score=382.41 Aligned_cols=272 Identities=41% Similarity=0.649 Sum_probs=236.5
Q ss_pred eEEEecCCCCceeccCCCCcEEEEEEcccccccCCCcccCcEEEEceecccCCceEEeeeccccccccccc--------c
Q 020346 3 VIVQQSEPSRTSDCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPP--------V 74 (327)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vGD~V~~~~~~~~~~~~~i~~i~~R~~~l~r~~--------~ 74 (327)
|+|++.+.++|+|.+ ++..+.|.+||++++.+..|+|||||.++..+ ++.++|++++||+|.|.||. +
T Consensus 1 g~v~~~~~~~~~v~~--~~~~~~~~~~g~~~~~~~~~~vGD~V~~~~~~--~~~~~i~~i~~R~~~l~R~~~~~~~~~i~ 76 (287)
T cd01854 1 GRVIAVHGGFYDVET--EGGELRCRARGKLRKKGIKPVVGDWVEVEPDD--DGEGVIVRVLPRKNLLSRPAAGGREQVIA 76 (287)
T ss_pred CEEEEEECCEEEEEE--CCeEEEEEeccccccCCCCccCCCEEEEEecC--CCcEEEEEEECCCceEEccCCCCcceeEE
Confidence 678999977777764 36789999999998766789999999998643 45789999999999999998 9
Q ss_pred ccccEEEEEeecCCCCCChHHHHHHHHHHHhcCCCEEEEeecCCCCcHHHHHHHHhhhhhcCCceeeccCcchhhHHHHH
Q 020346 75 ANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLL 154 (327)
Q Consensus 75 anvD~lliv~~~~~p~~~~~~l~r~L~~a~~~~~~~~ivlnK~Dl~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~l~ 154 (327)
||+|++++|+++..|.+++..+++||..+...++|+++|+||+||.++.....+...+..++++++.+|..+..+++.+.
T Consensus 77 anvD~vllV~d~~~p~~s~~~ldr~L~~~~~~~ip~iIVlNK~DL~~~~~~~~~~~~~~~~g~~v~~vSA~~g~gi~~L~ 156 (287)
T cd01854 77 ANVDQLVIVVSLNEPFFNPRLLDRYLVAAEAAGIEPVIVLTKADLLDDEEEELELVEALALGYPVLAVSAKTGEGLDELR 156 (287)
T ss_pred EeCCEEEEEEEcCCCCCCHHHHHHHHHHHHHcCCCEEEEEEHHHCCChHHHHHHHHHHHhCCCeEEEEECCCCccHHHHH
Confidence 99999999999998888889999999999999999999999999987654444555566688999999999999999999
Q ss_pred hhcCCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcceeeEEEEEEEccCC
Q 020346 155 QRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGG 234 (327)
Q Consensus 155 ~~l~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~tt~~i~~v~q~~~ 234 (327)
..+++++++|+|+||||||||+|.|+| ...++.| .++...++|+|+|++..+++...+
T Consensus 157 ~~L~~k~~~~~G~sg~GKSTlin~l~~------------~~~~~~g----------~v~~~~~~g~~tT~~~~~~~~~~~ 214 (287)
T cd01854 157 EYLKGKTSVLVGQSGVGKSTLINALLP------------DLDLATG----------EISEKLGRGRHTTTHRELFPLPGG 214 (287)
T ss_pred hhhccceEEEECCCCCCHHHHHHHHhc------------hhhcccc----------ceeccCCCCCcccceEEEEEcCCC
Confidence 999999999999999999999999999 3444444 344456789999999999999777
Q ss_pred CeEEeCcccCCccccccCHhHHhhhhHHHHHhcCccccccccccccccccCCceEEcc-------cHHHHHHHHHHHH
Q 020346 235 GYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG-------DWERYQYYFQLLD 305 (327)
Q Consensus 235 ~~i~Dtpg~~~~~l~~~~~~~l~~~~~~~~~~LSgGq~q~~~~~~~~h~~ep~~~v~~-------~~~r~~~~~~ll~ 305 (327)
++++||||+..+.+..++..++...|+++.+. ...|+|.+|+|.+||||+|+. +.+||++|++|++
T Consensus 215 ~~liDtPG~~~~~~~~~~~~~~~~~f~~~~~~-----~~~C~F~~C~H~~Ep~Cav~~av~~g~i~~~Ry~~y~~l~~ 287 (287)
T cd01854 215 GLLIDTPGFREFGLLHIDPEELAHYFPEFREL-----AGQCKFRDCTHTNEPGCAVKAAVEAGEISPERYESYLKLLE 287 (287)
T ss_pred CEEEECCCCCccCCccCCHHHHHHHhHHHHHH-----hCCCCCCCCcCCCCCCCHHHHHHHcCCCCHHHHHHHHHHhC
Confidence 89999999999887778889999999999888 788999999999999999965 4579999999863
|
YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation. |
| >TIGR00157 ribosome small subunit-dependent GTPase A | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-47 Score=354.33 Aligned_cols=237 Identities=39% Similarity=0.647 Sum_probs=212.0
Q ss_pred cccCcEEEEceecccCCceEEeeeccccccccccccccccEEEEEeecCCCCCChHHHHHHHHHHHhcCCCEEEEeecCC
Q 020346 39 VLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVE 118 (327)
Q Consensus 39 ~~vGD~V~~~~~~~~~~~~~i~~i~~R~~~l~r~~~anvD~lliv~~~~~p~~~~~~l~r~L~~a~~~~~~~~ivlnK~D 118 (327)
++|||||.++..+ ++.++|++|++|.+.+.|+.++|+|++++|+++..|.++...+++++..++..+.++++|+||+|
T Consensus 1 ~~vGD~V~~~~~~--~~~~~i~~i~eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~~~i~~vIV~NK~D 78 (245)
T TIGR00157 1 LVVGDRVVWEPGN--VVKVYGGAIAERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEAQNIEPIIVLNKID 78 (245)
T ss_pred CCCCcEEEEEecC--CCceEEEEEecccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECcc
Confidence 5899999998643 35689999999999999999999999999999999999999999999999888999999999999
Q ss_pred CCcHHHH-HHHHhhhhhcCCceeeccCcchhhHHHHHhhcCCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccc
Q 020346 119 LVDEEVL-NTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEP 197 (327)
Q Consensus 119 l~~~~~~-~~~~~~~~~~~~~~~~~s~~~~~~l~~l~~~l~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p 197 (327)
|.++... ..+...+..++++++.+|+.++.+++.+...+.+++++|+|+||||||||||.|.+..
T Consensus 79 L~~~~~~~~~~~~~~~~~g~~v~~~SAktg~gi~eLf~~l~~~~~~~~G~sgvGKStLiN~L~~~~-------------- 144 (245)
T TIGR00157 79 LLDDEDMEKEQLDIYRNIGYQVLMTSSKNQDGLKELIEALQNRISVFAGQSGVGKSSLINALDPSV-------------- 144 (245)
T ss_pred cCCCHHHHHHHHHHHHHCCCeEEEEecCCchhHHHHHhhhcCCEEEEECCCCCCHHHHHHHHhhhh--------------
Confidence 9764433 3566677778999999999999999998888889999999999999999999999954
Q ss_pred cccceeecceeeccccccCCCcceeeEEEEEEEccCCCeEEeCcccCCccccccCHhHHhhhhHHHHHhcCccccccccc
Q 020346 198 ILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSF 277 (327)
Q Consensus 198 ~~G~i~~~g~~v~~~s~~~~~g~~tt~~i~~v~q~~~~~i~Dtpg~~~~~l~~~~~~~l~~~~~~~~~~LSgGq~q~~~~ 277 (327)
...+++++.+.++|+|||++..+++. .+++++|||||+.+.++.++.+++...||++.++ .+.|+|
T Consensus 145 --------~~~t~~i~~~~~~G~hTT~~~~l~~l-~~~~liDtPG~~~~~l~~~~~~~~~~~f~e~~~~-----~~~C~f 210 (245)
T TIGR00157 145 --------KQQVNDISSKLGLGKHTTTHVELFHF-HGGLIADTPGFNEFGLWHLEPEQLTQGFVEFRDY-----LGECKF 210 (245)
T ss_pred --------hccccceeccCCCCCCcCCceEEEEc-CCcEEEeCCCccccCCCCCCHHHHHHhCHHHHHH-----hCCCCC
Confidence 25677888888999999999999998 5789999999999999999989999999999888 678999
Q ss_pred cccccccCCceEEcc-------cHHHHHHHHHHHH
Q 020346 278 NNCLHLGEPGCVVKG-------DWERYQYYFQLLD 305 (327)
Q Consensus 278 ~~~~h~~ep~~~v~~-------~~~r~~~~~~ll~ 305 (327)
.+|+|.+||||+|+. ++.||++|++|++
T Consensus 211 ~~C~H~~ep~C~v~~a~~~g~i~~~ry~~y~~~~~ 245 (245)
T TIGR00157 211 RDCLHQSEPGCAVRQAVEQGEISEWRYENYLKLIE 245 (245)
T ss_pred CCCccCCCCCChHHHHHHcCCCCHHHHHHHHHHhC
Confidence 999999999999976 4569999999863
|
The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option). |
| >PRK01889 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-45 Score=357.56 Aligned_cols=274 Identities=30% Similarity=0.442 Sum_probs=229.6
Q ss_pred CeeEEEecCCCCceeccCCCCcEEEEEEcccccc----cCCCcccCcEEEEceecccCCceEEeeeccccccccccc---
Q 020346 1 MRVIVQQSEPSRTSDCNDKTGVELLCVVRALLKK----IKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPP--- 73 (327)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~vGD~V~~~~~~~~~~~~~i~~i~~R~~~l~r~~--- 73 (327)
|.|+|++.+.|+|+|.++ +| ++.|.++|+++. .+..++|||||.++. ++.|+|++++||+|.|.||.
T Consensus 29 ~~g~v~~~~~~~~~v~~~-~~-~~~~~~~gk~~~~~~~~~~~~~vGD~V~~~~----~~~g~I~~i~pR~~~L~R~~~~~ 102 (356)
T PRK01889 29 EPGRVVEEHRSGYVVATE-EG-EVRAEVSGKWRHEAFPPGDRPAVGDWVLLDN----EKKARIVRLLPRRSLFSRKAAGT 102 (356)
T ss_pred ccEEEEEEECCEEEEEEC-Cc-EEEEEecchhhccccccCCCCccCcEEEEec----CCceEEEEEECCCceEEcCCCCC
Confidence 579999999788888753 44 678999999874 345699999999974 35689999999999999986
Q ss_pred -------cccccEEEEEeecCCCCCChHHHHHHHHHHHhcCCCEEEEeecCCCCcHHH-HHHHHhhhhhcCCceeeccCc
Q 020346 74 -------VANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEV-LNTWKSRLHTWGYEPLFCSVE 145 (327)
Q Consensus 74 -------~anvD~lliv~~~~~p~~~~~~l~r~L~~a~~~~~~~~ivlnK~Dl~~~~~-~~~~~~~~~~~~~~~~~~s~~ 145 (327)
|||+|++++|+++. |.+++.+++|||+.|+..++++++|+||+||.++.. ...+...+ ..+|+++.+|..
T Consensus 103 ~~~~q~iaANvD~vliV~s~~-p~~~~~~ldr~L~~a~~~~i~piIVLNK~DL~~~~~~~~~~~~~~-~~g~~Vi~vSa~ 180 (356)
T PRK01889 103 RSEEQLIAANVDTVFIVCSLN-HDFNLRRIERYLALAWESGAEPVIVLTKADLCEDAEEKIAEVEAL-APGVPVLAVSAL 180 (356)
T ss_pred CccceeEEEeCCEEEEEEecC-CCCChhHHHHHHHHHHHcCCCEEEEEEChhcCCCHHHHHHHHHHh-CCCCcEEEEECC
Confidence 69999999999996 889999999999999999999999999999987532 22233333 568999999999
Q ss_pred chhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcceeeE
Q 020346 146 SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTR 224 (327)
Q Consensus 146 ~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~tt~ 224 (327)
+..+++.|...+ +|++++|+|+||+|||||+|.|+| ...|..|+|.+++. +++|+|+
T Consensus 181 ~g~gl~~L~~~L~~g~~~~lvG~sgvGKStLin~L~g------------~~~~~~G~i~~~~~----------~g~~tt~ 238 (356)
T PRK01889 181 DGEGLDVLAAWLSGGKTVALLGSSGVGKSTLVNALLG------------EEVQKTGAVREDDS----------KGRHTTT 238 (356)
T ss_pred CCccHHHHHHHhhcCCEEEEECCCCccHHHHHHHHHH------------hcccceeeEEECCC----------CCcchhh
Confidence 999999999988 689999999999999999999999 77788898877543 3456666
Q ss_pred EEEEEEccCCCeEEeCcccCCccccccCHhHHhhhhHHHHHhcCccccccccccccccccCCceEEcc-------cHHHH
Q 020346 225 HVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG-------DWERY 297 (327)
Q Consensus 225 ~i~~v~q~~~~~i~Dtpg~~~~~l~~~~~~~l~~~~~~~~~~LSgGq~q~~~~~~~~h~~ep~~~v~~-------~~~r~ 297 (327)
+..+.+...+.+++||||+..+.+.... ..+...|+++... ...|.|.+|.|.+||+|.|+. ..+||
T Consensus 239 ~~~l~~l~~~~~l~DtpG~~~~~l~~~~-~~l~~~f~~~~~~-----~~~c~f~~c~h~~E~~c~v~~a~~~~~i~~~r~ 312 (356)
T PRK01889 239 HRELHPLPSGGLLIDTPGMRELQLWDAE-DGVEETFSDIEEL-----AAQCRFRDCAHEAEPGCAVQAAIENGELDERRL 312 (356)
T ss_pred hccEEEecCCCeecCCCchhhhcccCch-hhHHHhHHHHHHH-----HccCCCCCCCCCCCCCChHHHHHHcCCCCHHHH
Confidence 6555555556799999999998887643 6688999999888 788999999999999999964 45799
Q ss_pred HHHHHHHHHHHHh
Q 020346 298 QYYFQLLDEIRIR 310 (327)
Q Consensus 298 ~~~~~ll~e~~~~ 310 (327)
+.|++|++|+...
T Consensus 313 ~~Y~~l~~e~~~~ 325 (356)
T PRK01889 313 QSYRKLQREQAYN 325 (356)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998653
|
|
| >PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis | Back alignment and domain information |
|---|
Probab=99.98 E-value=9.8e-33 Score=238.53 Aligned_cols=153 Identities=46% Similarity=0.840 Sum_probs=120.1
Q ss_pred HHHHhhhhhcCCceeeccCcchhhHHHHHhhcCCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeec
Q 020346 126 NTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205 (327)
Q Consensus 126 ~~~~~~~~~~~~~~~~~s~~~~~~l~~l~~~l~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~ 205 (327)
++|...|+++||+++.+|..+..+++.|...+++++++|+|+||||||||+|.|.+..
T Consensus 2 ~~~~~~y~~~gy~v~~~S~~~~~g~~~l~~~l~~k~~vl~G~SGvGKSSLiN~L~~~~---------------------- 59 (161)
T PF03193_consen 2 EELLEQYEKLGYPVFFISAKTGEGIEELKELLKGKTSVLLGQSGVGKSSLINALLPEA---------------------- 59 (161)
T ss_dssp HHHHHHHHHTTSEEEE-BTTTTTTHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHTSS----------------------
T ss_pred HHHHHHHHHcCCcEEEEeCCCCcCHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhhc----------------------
Confidence 3567889999999999999999999999999999999999999999999999999953
Q ss_pred ceeeccccccCCCcceeeEEEEEEEccCCCeEEeCcccCCccccccCHhHHhhhhHHHHHhcCccccccccccccccccC
Q 020346 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGE 285 (327)
Q Consensus 206 g~~v~~~s~~~~~g~~tt~~i~~v~q~~~~~i~Dtpg~~~~~l~~~~~~~l~~~~~~~~~~LSgGq~q~~~~~~~~h~~e 285 (327)
.+.+++++.+.++|+|||++..+++.+.+++++|||||+.+.++.++.+++...||++..+ ...|+|.+|.|.+|
T Consensus 60 ~~~t~~is~~~~rGkHTTt~~~l~~l~~g~~iIDTPGf~~~~l~~~~~~~l~~~F~e~~~~-----~~~CkF~~C~H~~E 134 (161)
T PF03193_consen 60 KQKTGEISEKTGRGKHTTTHRELFPLPDGGYIIDTPGFRSFGLWHIDPEELAQYFPEFRPL-----AGQCKFRDCTHIHE 134 (161)
T ss_dssp ----S--------------SEEEEEETTSEEEECSHHHHT--GCCS-HHHHHHCSGGGHHH-----TTHSSSTTTTSSSS
T ss_pred chhhhhhhcccCCCcccCCCeeEEecCCCcEEEECCCCCccccccCCHHHHHHHHHHhccc-----cCCCCccCCCCCCC
Confidence 2678899998899999999999999988999999999999999999999999999999998 78999999999999
Q ss_pred CceEEcc-------cHHHHHHHHHHHH
Q 020346 286 PGCVVKG-------DWERYQYYFQLLD 305 (327)
Q Consensus 286 p~~~v~~-------~~~r~~~~~~ll~ 305 (327)
|+|+|+. ++.||++|++|++
T Consensus 135 p~CaV~~av~~g~i~~~Ry~~Y~~l~~ 161 (161)
T PF03193_consen 135 PGCAVKAAVENGEISPERYESYLKLLD 161 (161)
T ss_dssp TT-HHHHHHHTTSS-HHHHHHHHHHHH
T ss_pred CCChHHHHHHCCCCcHHHHHHHHHHhC
Confidence 9999965 4569999999975
|
RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B. |
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.4e-26 Score=206.51 Aligned_cols=156 Identities=21% Similarity=0.251 Sum_probs=126.3
Q ss_pred CCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccc
Q 020346 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (327)
Q Consensus 136 ~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~ 214 (327)
.++.+..+|++.++|+++++.+ +|++++|+|||||||||||+||.+ +.+|++|+|+++|.++.....
T Consensus 4 ~i~~l~K~fg~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~------------LE~~~~G~I~i~g~~~~~~~~ 71 (240)
T COG1126 4 EIKNLSKSFGDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNG------------LEEPDSGSITVDGEDVGDKKD 71 (240)
T ss_pred EEEeeeEEeCCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHC------------CcCCCCceEEECCEeccchhh
Confidence 3567889999999999999998 999999999999999999999999 999999999999987753321
Q ss_pred cCCCcceeeEEEEEEEccCCC----eEEeCcccCC----------------ccccccCHhHHhhhhHHHHHhcCcccccc
Q 020346 215 KSGRGKHTTRHVSLLPLSGGG----YLADTPGFNQ----------------PSLLKVTKQSLAQTFPEIKEMLKANEPAK 274 (327)
Q Consensus 215 ~~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~----------------~~l~~~~~~~l~~~~~~~~~~LSgGq~q~ 274 (327)
-...++.+++|+|.++. ++.++..... ..++.+.+.+.++.+|.. |||||+||
T Consensus 72 ----~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~q---LSGGQqQR 144 (240)
T COG1126 72 ----ILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQ---LSGGQQQR 144 (240)
T ss_pred ----HHHHHHhcCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccc---cCcHHHHH
Confidence 11278889999998755 3445433321 123455566677778877 99999999
Q ss_pred ccccccccccCCceEEcc------cHHHHHHHHHHHHHHHHhH
Q 020346 275 CSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIRE 311 (327)
Q Consensus 275 ~~~~~~~h~~ep~~~v~~------~~~r~~~~~~ll~e~~~~~ 311 (327)
+++|+++ ..+|++.+.| ||+-....+.+++++.+.+
T Consensus 145 VAIARAL-aM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eG 186 (240)
T COG1126 145 VAIARAL-AMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEG 186 (240)
T ss_pred HHHHHHH-cCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcC
Confidence 9999999 8999999988 6677888888888887765
|
|
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.5e-25 Score=196.14 Aligned_cols=159 Identities=14% Similarity=0.213 Sum_probs=129.3
Q ss_pred CCceeeccCcchh-hHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccc
Q 020346 136 GYEPLFCSVESKL-GLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (327)
Q Consensus 136 ~~~~~~~s~~~~~-~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s 213 (327)
.|+.++..|...+ +|+++++.+ +|+.+-++|||||||||||++|.+ ..+||+|+|+++|.+++.++
T Consensus 3 ~f~~V~k~Y~~g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~------------~e~pt~G~i~~~~~dl~~l~ 70 (223)
T COG2884 3 RFENVSKAYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYG------------EERPTRGKILVNGHDLSRLK 70 (223)
T ss_pred eehhhhhhcCCCchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHh------------hhcCCCceEEECCeeccccc
Confidence 4667778886544 999999998 999999999999999999999999 78999999999999999887
Q ss_pred ccCCCcceeeEEEEEEEccCC----CeEEeCcccCCcc---------------ccccCHhHHhhhhHHHHHhcCcccccc
Q 020346 214 TKSGRGKHTTRHVSLLPLSGG----GYLADTPGFNQPS---------------LLKVTKQSLAQTFPEIKEMLKANEPAK 274 (327)
Q Consensus 214 ~~~~~g~~tt~~i~~v~q~~~----~~i~Dtpg~~~~~---------------l~~~~~~~l~~~~~~~~~~LSgGq~q~ 274 (327)
.++ -+..++++++|+|++. .++.|+..+.... ++.+.+.+....+|.. |||||+||
T Consensus 71 ~~~--iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~---LSGGEQQR 145 (223)
T COG2884 71 GRE--IPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQ---LSGGEQQR 145 (223)
T ss_pred ccc--cchhhheeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccc---cCchHHHH
Confidence 543 4568999999999873 4667776654321 3334445556677776 99999999
Q ss_pred ccccccccccCCceEEccc------HHHHHHHHHHHHHHHHhHH
Q 020346 275 CSFNNCLHLGEPGCVVKGD------WERYQYYFQLLDEIRIREE 312 (327)
Q Consensus 275 ~~~~~~~h~~ep~~~v~~~------~~r~~~~~~ll~e~~~~~~ 312 (327)
+++|+++ ++.|.+++.|+ |.-....+.+++|++..+-
T Consensus 146 vaIARAi-V~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~Gt 188 (223)
T COG2884 146 VAIARAI-VNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGT 188 (223)
T ss_pred HHHHHHH-ccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCc
Confidence 9999999 99999999884 5566667788888877654
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.4e-25 Score=211.72 Aligned_cols=138 Identities=17% Similarity=0.205 Sum_probs=114.6
Q ss_pred cCCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccc
Q 020346 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (327)
Q Consensus 135 ~~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s 213 (327)
+.++.+..+|++..+++++++.+ +|+.++|+||||||||||||+|+| +.+|++|+|.|+|.+++.++
T Consensus 4 i~l~~v~K~yg~~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAG------------Le~~~~G~I~i~g~~vt~l~ 71 (338)
T COG3839 4 LELKNVRKSFGSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAG------------LEEPTSGEILIDGRDVTDLP 71 (338)
T ss_pred EEEeeeEEEcCCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhC------------CCCCCCceEEECCEECCCCC
Confidence 44677888998766899999998 899999999999999999999999 99999999999999999987
Q ss_pred ccCCCcceeeEEEEEEEccC----CCeEEeCcccCCccc---------------cccCHhHHhhhhHHHHHhcCcccccc
Q 020346 214 TKSGRGKHTTRHVSLLPLSG----GGYLADTPGFNQPSL---------------LKVTKQSLAQTFPEIKEMLKANEPAK 274 (327)
Q Consensus 214 ~~~~~g~~tt~~i~~v~q~~----~~~i~Dtpg~~~~~l---------------~~~~~~~l~~~~~~~~~~LSgGq~q~ 274 (327)
++ .++++||+|++ .+++.|+.+|..... +.+...++.+..|.. |||||+||
T Consensus 72 P~-------~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~---LSGGQrQR 141 (338)
T COG3839 72 PE-------KRGIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQ---LSGGQRQR 141 (338)
T ss_pred hh-------HCCEEEEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCccc---CChhhHHH
Confidence 64 57899999985 557778887764321 122333444444444 99999999
Q ss_pred ccccccccccCCceEEcccHH
Q 020346 275 CSFNNCLHLGEPGCVVKGDWE 295 (327)
Q Consensus 275 ~~~~~~~h~~ep~~~v~~~~~ 295 (327)
+++++|+ +.+|.+.++|+|-
T Consensus 142 VAlaRAl-Vr~P~v~L~DEPl 161 (338)
T COG3839 142 VALARAL-VRKPKVFLLDEPL 161 (338)
T ss_pred HHHHHHH-hcCCCEEEecCch
Confidence 9999999 9999999999874
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.5e-25 Score=201.08 Aligned_cols=133 Identities=17% Similarity=0.214 Sum_probs=106.8
Q ss_pred CCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccc
Q 020346 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (327)
Q Consensus 136 ~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~ 214 (327)
.++.+..+|+...+++++++.+ +|++++|+||||||||||+|+|+| +.+|++|+|.++|+++...
T Consensus 5 ~i~~v~~~f~~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAG------------L~~p~~G~V~~~g~~v~~p-- 70 (248)
T COG1116 5 EIEGVSKSFGGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAG------------LEKPTSGEVLLDGRPVTGP-- 70 (248)
T ss_pred EEEeeEEEeCceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhC------------CCCCCCceEEECCcccCCC--
Confidence 3466778888889999999998 999999999999999999999999 9999999999999988332
Q ss_pred cCCCcceeeEEEEEEEccCCC----eEEeCcccCCcc---------------ccccCHhHHhhhhHHHHHhcCccccccc
Q 020346 215 KSGRGKHTTRHVSLLPLSGGG----YLADTPGFNQPS---------------LLKVTKQSLAQTFPEIKEMLKANEPAKC 275 (327)
Q Consensus 215 ~~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~~---------------l~~~~~~~l~~~~~~~~~~LSgGq~q~~ 275 (327)
...++|++|++.. ++.||..+.... ++.+.+.+..+.+|.. |||||+||+
T Consensus 71 --------~~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~q---LSGGMrQRV 139 (248)
T COG1116 71 --------GPDIGYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQ---LSGGMRQRV 139 (248)
T ss_pred --------CCCEEEEeccCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCccc---cChHHHHHH
Confidence 3468899998654 445665443221 2223333445566666 999999999
Q ss_pred cccccccccCCceEEcccH
Q 020346 276 SFNNCLHLGEPGCVVKGDW 294 (327)
Q Consensus 276 ~~~~~~h~~ep~~~v~~~~ 294 (327)
+|++++ +.+|+++++|+|
T Consensus 140 aiARAL-~~~P~lLLlDEP 157 (248)
T COG1116 140 AIARAL-ATRPKLLLLDEP 157 (248)
T ss_pred HHHHHH-hcCCCEEEEcCC
Confidence 999999 999999999976
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.9e-25 Score=213.17 Aligned_cols=153 Identities=16% Similarity=0.253 Sum_probs=122.6
Q ss_pred cCCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccc
Q 020346 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (327)
Q Consensus 135 ~~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s 213 (327)
+.++.+..+|++..+++++++.+ +|+.++|+|||||||||||++|+| |..|++|+|+++|+++..++
T Consensus 6 l~i~~v~k~yg~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAG------------fe~p~~G~I~l~G~~i~~lp 73 (352)
T COG3842 6 LEIRNVSKSFGDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAG------------FEQPSSGEILLDGEDITDVP 73 (352)
T ss_pred EEEEeeeeecCCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhC------------CCCCCCceEEECCEECCCCC
Confidence 34678899999999999999998 999999999999999999999999 99999999999999999988
Q ss_pred ccCCCcceeeEEEEEEEccC----CCeEEeCcccCCcc----------------ccccCHhHHhhhhHHHHHhcCccccc
Q 020346 214 TKSGRGKHTTRHVSLLPLSG----GGYLADTPGFNQPS----------------LLKVTKQSLAQTFPEIKEMLKANEPA 273 (327)
Q Consensus 214 ~~~~~g~~tt~~i~~v~q~~----~~~i~Dtpg~~~~~----------------l~~~~~~~l~~~~~~~~~~LSgGq~q 273 (327)
. ..+.+++|+|+. ++++.|+.+|.... ++.+.+.+.....|.. |||||+|
T Consensus 74 p-------~kR~ig~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~q---LSGGQqQ 143 (352)
T COG3842 74 P-------EKRPIGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQ---LSGGQQQ 143 (352)
T ss_pred h-------hhcccceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhh---hChHHHH
Confidence 6 467899999985 66788887776441 1122333445555555 9999999
Q ss_pred cccccccccccCCceEEcccHH---HHHHHHHHHHHHHHh
Q 020346 274 KCSFNNCLHLGEPGCVVKGDWE---RYQYYFQLLDEIRIR 310 (327)
Q Consensus 274 ~~~~~~~~h~~ep~~~v~~~~~---r~~~~~~ll~e~~~~ 310 (327)
|+++|+++ +.+|+++++|+|. ....-.+|..|++..
T Consensus 144 RVALARAL-~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~l 182 (352)
T COG3842 144 RVALARAL-VPEPKVLLLDEPLSALDAKLREQMRKELKEL 182 (352)
T ss_pred HHHHHHHh-hcCcchhhhcCcccchhHHHHHHHHHHHHHH
Confidence 99999999 9999999999874 222223444454443
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.2e-24 Score=200.94 Aligned_cols=142 Identities=20% Similarity=0.261 Sum_probs=112.9
Q ss_pred CCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccc
Q 020346 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (327)
Q Consensus 136 ~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~ 214 (327)
..+.++++|+++.+++++++.+ +|++++|+||||||||||+++|+| +.+|.+|+|+++|+++...+.
T Consensus 4 ~~~~ls~~y~~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g------------~l~p~~G~V~l~g~~i~~~~~ 71 (258)
T COG1120 4 EVENLSFGYGGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAG------------LLKPKSGEVLLDGKDIASLSP 71 (258)
T ss_pred EEEEEEEEECCeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhc------------cCCCCCCEEEECCCchhhcCH
Confidence 4578899999999999999998 899999999999999999999999 999999999999999999887
Q ss_pred cCCCcceeeEEEEEEEccC----CCeEEeCcccCCcc-c---cccCHhHHh------------hhhHHHHHhcCcccccc
Q 020346 215 KSGRGKHTTRHVSLLPLSG----GGYLADTPGFNQPS-L---LKVTKQSLA------------QTFPEIKEMLKANEPAK 274 (327)
Q Consensus 215 ~~~~g~~tt~~i~~v~q~~----~~~i~Dtpg~~~~~-l---~~~~~~~l~------------~~~~~~~~~LSgGq~q~ 274 (327)
+. ..+.++|+||.+ +.++.|...+.... . ...+.++.. +........|||||+||
T Consensus 72 ke-----lAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQr 146 (258)
T COG1120 72 KE-----LAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQR 146 (258)
T ss_pred HH-----HhhhEEEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHH
Confidence 66 788999999985 45677765544321 1 111111111 11111123499999999
Q ss_pred ccccccccccCCceEEcccHH
Q 020346 275 CSFNNCLHLGEPGCVVKGDWE 295 (327)
Q Consensus 275 ~~~~~~~h~~ep~~~v~~~~~ 295 (327)
+.+|+++ ..+|+++++|+|.
T Consensus 147 v~iArAL-aQ~~~iLLLDEPT 166 (258)
T COG1120 147 VLIARAL-AQETPILLLDEPT 166 (258)
T ss_pred HHHHHHH-hcCCCEEEeCCCc
Confidence 9999999 9999999999875
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.7e-24 Score=200.59 Aligned_cols=155 Identities=19% Similarity=0.249 Sum_probs=123.7
Q ss_pred ceeeccCcc-----hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecc
Q 020346 138 EPLFCSVES-----KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (327)
Q Consensus 138 ~~~~~s~~~-----~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~ 211 (327)
+.+++.|.. ..+++++++.+ +|++.+|||.||||||||++++.+ +.+|++|+|+++|+++..
T Consensus 5 ~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~------------Le~PtsG~v~v~G~di~~ 72 (339)
T COG1135 5 ENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINL------------LERPTSGSVFVDGQDLTA 72 (339)
T ss_pred EeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhc------------cCCCCCceEEEcCEeccc
Confidence 444445543 46899999998 999999999999999999999999 999999999999999988
Q ss_pred ccccCCCcceeeEEEEEEEccCCC----eEEeCcccCCcc---------------ccccCHhHHhhhhHHHHHhcCcccc
Q 020346 212 VSTKSGRGKHTTRHVSLLPLSGGG----YLADTPGFNQPS---------------LLKVTKQSLAQTFPEIKEMLKANEP 272 (327)
Q Consensus 212 ~s~~~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~~---------------l~~~~~~~l~~~~~~~~~~LSgGq~ 272 (327)
++...- +..++.++|++|.++. ++.++..|.... ++.+...+..+.+|.. |||||+
T Consensus 73 l~~~~L--r~~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~q---LSGGQK 147 (339)
T COG1135 73 LSEAEL--RQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQ---LSGGQK 147 (339)
T ss_pred CChHHH--HHHHhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchh---cCcchh
Confidence 875432 4578999999998754 455555543211 2233344555666666 999999
Q ss_pred ccccccccccccCCceEEcc------cHHHHHHHHHHHHHHHHh
Q 020346 273 AKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (327)
Q Consensus 273 q~~~~~~~~h~~ep~~~v~~------~~~r~~~~~~ll~e~~~~ 310 (327)
||+++|+++ +.+|++++-| ||+--++..++|++++..
T Consensus 148 QRVaIARAL-a~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~ 190 (339)
T COG1135 148 QRVAIARAL-ANNPKILLCDEATSALDPETTQSILELLKDINRE 190 (339)
T ss_pred hHHHHHHHH-hcCCCEEEecCccccCChHHHHHHHHHHHHHHHH
Confidence 999999999 9999999988 788889999999988664
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.3e-23 Score=193.23 Aligned_cols=154 Identities=18% Similarity=0.262 Sum_probs=115.1
Q ss_pred cCCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccc
Q 020346 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (327)
Q Consensus 135 ~~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s 213 (327)
+.++.+.++|.+.++++++++.+ +|++++|+||||||||||+++|+| +.+|++|+|.+.|.++....
T Consensus 5 i~v~nl~v~y~~~~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLG------------ll~p~~G~i~~~g~~~~~~~ 72 (254)
T COG1121 5 IEVENLTVSYGNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILG------------LLKPSSGEIKIFGKPVRKRR 72 (254)
T ss_pred EEEeeeEEEECCEeeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhC------------CCcCCcceEEEccccccccc
Confidence 45678899998657999999998 899999999999999999999999 99999999999998876654
Q ss_pred ccCCCcceeeEEEEEEEccCC------CeEEeCcccCCc-------------------cccccCHhHHhhhhHHHHHhcC
Q 020346 214 TKSGRGKHTTRHVSLLPLSGG------GYLADTPGFNQP-------------------SLLKVTKQSLAQTFPEIKEMLK 268 (327)
Q Consensus 214 ~~~~~g~~tt~~i~~v~q~~~------~~i~Dtpg~~~~-------------------~l~~~~~~~l~~~~~~~~~~LS 268 (327)
....++||||... .++.|...+... .++.+.+.++.+ .....||
T Consensus 73 --------~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~---r~i~~LS 141 (254)
T COG1121 73 --------KRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRD---RQIGELS 141 (254)
T ss_pred --------cCCeEEEcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhC---CcccccC
Confidence 3467999999531 122232222110 011111111111 1123499
Q ss_pred ccccccccccccccccCCceEEcccH------HHHHHHHHHHHHHHHhHH
Q 020346 269 ANEPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRIREE 312 (327)
Q Consensus 269 gGq~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~~~~ 312 (327)
|||+||+.+|+|+ +.+|+++|+|+| .....+.++++++++.++
T Consensus 142 GGQ~QRV~lARAL-~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~ 190 (254)
T COG1121 142 GGQKQRVLLARAL-AQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGK 190 (254)
T ss_pred cHHHHHHHHHHHh-ccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCC
Confidence 9999999999999 999999999955 577777789999887644
|
|
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.88 E-value=8.1e-24 Score=190.50 Aligned_cols=158 Identities=15% Similarity=0.255 Sum_probs=127.1
Q ss_pred CCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccc
Q 020346 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (327)
Q Consensus 136 ~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~ 214 (327)
.++.++..|+.-++++++++.+ +|++++++|+||||||||+++|+| +.+|.+|+|.|+|+++...+.
T Consensus 5 ~v~~l~~~YG~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~G------------l~~~~~G~I~~~G~dit~~p~ 72 (237)
T COG0410 5 EVENLSAGYGKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMG------------LVRPRSGRIIFDGEDITGLPP 72 (237)
T ss_pred eEEeEeecccceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhC------------CCCCCCeeEEECCeecCCCCH
Confidence 4577888999999999999998 999999999999999999999999 899999999999999999987
Q ss_pred cCCCcceeeEEEEEEEccC----CCeEEeCcccCCccc-----cccCHhHHhhhhHHHHHh-------cCcccccccccc
Q 020346 215 KSGRGKHTTRHVSLLPLSG----GGYLADTPGFNQPSL-----LKVTKQSLAQTFPEIKEM-------LKANEPAKCSFN 278 (327)
Q Consensus 215 ~~~~g~~tt~~i~~v~q~~----~~~i~Dtpg~~~~~l-----~~~~~~~l~~~~~~~~~~-------LSgGq~q~~~~~ 278 (327)
... .+..++|+||.. .+++.++..+..... ..-..+.+...||.+.+. |||||+|.++++
T Consensus 73 ~~r----~r~Gi~~VPegR~iF~~LTVeENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAia 148 (237)
T COG0410 73 HER----ARLGIAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIA 148 (237)
T ss_pred HHH----HhCCeEeCcccccchhhCcHHHHHhhhhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHH
Confidence 654 778899999975 334555544332211 111256788889988764 999999999999
Q ss_pred ccccccCCceEEcccHH------HHHHHHHHHHHHHHh
Q 020346 279 NCLHLGEPGCVVKGDWE------RYQYYFQLLDEIRIR 310 (327)
Q Consensus 279 ~~~h~~ep~~~v~~~~~------r~~~~~~ll~e~~~~ 310 (327)
+++ +.+|+++++|+|. =.+...+.++++++.
T Consensus 149 RAL-m~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~ 185 (237)
T COG0410 149 RAL-MSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKE 185 (237)
T ss_pred HHH-hcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHc
Confidence 999 9999999999763 455555666666543
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.5e-24 Score=194.35 Aligned_cols=156 Identities=17% Similarity=0.215 Sum_probs=114.2
Q ss_pred ceeeccCcc----hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccc
Q 020346 138 EPLFCSVES----KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV 212 (327)
Q Consensus 138 ~~~~~s~~~----~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~ 212 (327)
+.+...|.. ..+++++++.+ +|+.++|+||||||||||||+|.| +..|++|.|+++|+++...
T Consensus 5 ~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~------------ld~pt~G~v~i~g~d~~~l 72 (226)
T COG1136 5 KNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGG------------LDKPTSGEVLINGKDLTKL 72 (226)
T ss_pred eeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhc------------ccCCCCceEEECCEEcCcC
Confidence 344444433 36899999998 999999999999999999999999 9999999999999999887
Q ss_pred cccCCCcceeeEEEEEEEccCCC----eEEeCccc----CCcc-----------ccccCHhHHhh-hhHHHHHhcCcccc
Q 020346 213 STKSGRGKHTTRHVSLLPLSGGG----YLADTPGF----NQPS-----------LLKVTKQSLAQ-TFPEIKEMLKANEP 272 (327)
Q Consensus 213 s~~~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~----~~~~-----------l~~~~~~~l~~-~~~~~~~~LSgGq~ 272 (327)
+.+. +....++++++++|.++. ++.++..+ .... ++.+...+... .+|.. |||||+
T Consensus 73 ~~~~-~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~e---LSGGqq 148 (226)
T COG1136 73 SEKE-LAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSE---LSGGQQ 148 (226)
T ss_pred CHHH-HHHHHHHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchh---cCHHHH
Confidence 6432 233457889999998643 33333321 1000 11112222222 44555 999999
Q ss_pred ccccccccccccCCceEEcccH------HHHHHHHHHHHHHHHh
Q 020346 273 AKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRIR 310 (327)
Q Consensus 273 q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~~ 310 (327)
||+++|+++ +++|.+++.|+| +.-+...+++.++.+.
T Consensus 149 QRVAIARAL-~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~ 191 (226)
T COG1136 149 QRVAIARAL-INNPKIILADEPTGNLDSKTAKEVLELLRELNKE 191 (226)
T ss_pred HHHHHHHHH-hcCCCeEEeeCccccCChHHHHHHHHHHHHHHHh
Confidence 999999999 999999999866 4667777778777554
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.4e-23 Score=189.61 Aligned_cols=151 Identities=15% Similarity=0.257 Sum_probs=118.0
Q ss_pred CCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccc
Q 020346 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (327)
Q Consensus 136 ~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~ 214 (327)
.|+.+++.|++..+++++++.+ +|+.++|+|||||||||++++|.+ +++|++|+|+++|+++.....
T Consensus 3 ~~~nvsk~y~~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINr------------Liept~G~I~i~g~~i~~~d~ 70 (309)
T COG1125 3 EFENVSKRYGNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINR------------LIEPTSGEILIDGEDISDLDP 70 (309)
T ss_pred eeeeeehhcCCceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhc------------ccCCCCceEEECCeecccCCH
Confidence 4788999999999999999998 899999999999999999999999 999999999999999998876
Q ss_pred cCCCcceeeEEEEEEEccC----CCeEEeCcccCCcc-----------------ccccCHhHHhhhhHHHHHhcCccccc
Q 020346 215 KSGRGKHTTRHVSLLPLSG----GGYLADTPGFNQPS-----------------LLKVTKQSLAQTFPEIKEMLKANEPA 273 (327)
Q Consensus 215 ~~~~g~~tt~~i~~v~q~~----~~~i~Dtpg~~~~~-----------------l~~~~~~~l~~~~~~~~~~LSgGq~q 273 (327)
.. .++++||+-|.. +.++.++....... +-.++..+..+.+|.. |||||+|
T Consensus 71 ~~-----LRr~IGYviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~e---LSGGQQQ 142 (309)
T COG1125 71 VE-----LRRKIGYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHE---LSGGQQQ 142 (309)
T ss_pred HH-----HHHhhhhhhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchh---cCcchhh
Confidence 54 788999998864 33455554433110 1112333455566665 9999999
Q ss_pred cccccccccccCCceEEcccH------HHHHHHHHHHHHH
Q 020346 274 KCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEI 307 (327)
Q Consensus 274 ~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~ 307 (327)
|+.+++++ ..+|.++++|+| -....++..+.++
T Consensus 143 RVGv~RAL-AadP~ilLMDEPFgALDpI~R~~lQ~e~~~l 181 (309)
T COG1125 143 RVGVARAL-AADPPILLMDEPFGALDPITRKQLQEEIKEL 181 (309)
T ss_pred HHHHHHHH-hcCCCeEeecCCccccChhhHHHHHHHHHHH
Confidence 99999999 999999999955 2334444444444
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.7e-23 Score=187.58 Aligned_cols=162 Identities=16% Similarity=0.271 Sum_probs=118.1
Q ss_pred cCCceeeccC-cchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccc
Q 020346 135 WGYEPLFCSV-ESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV 212 (327)
Q Consensus 135 ~~~~~~~~s~-~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~ 212 (327)
+.++.++..| ++..+++++++.+ +|+.++|||+|||||||||++|.| +.+|++|+|+++|.++...
T Consensus 4 i~~~nl~k~yp~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lng------------l~d~t~G~i~~~g~~i~~~ 71 (258)
T COG3638 4 IEVKNLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNG------------LVDPTSGEILFNGVQITKL 71 (258)
T ss_pred EEEeeeeeecCCCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhc------------ccCCCcceEEecccchhcc
Confidence 3467788888 7888999999998 999999999999999999999999 9999999999999988777
Q ss_pred cccCCCcceeeEEEEEEEccCCC----eEEeCcccCCc--------cccccCHhHHhhhhHHH------------HHhcC
Q 020346 213 STKSGRGKHTTRHVSLLPLSGGG----YLADTPGFNQP--------SLLKVTKQSLAQTFPEI------------KEMLK 268 (327)
Q Consensus 213 s~~~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~--------~l~~~~~~~l~~~~~~~------------~~~LS 268 (327)
..+. -+..+++++|++|.++. +++.+...... .+..+..++....+..+ ...||
T Consensus 72 ~~k~--lr~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LS 149 (258)
T COG3638 72 KGKE--LRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLS 149 (258)
T ss_pred chHH--HHHHHHhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCC
Confidence 6443 23478899999998754 22222111100 01111222111111111 23499
Q ss_pred ccccccccccccccccCCceEEccc------HHHHHHHHHHHHHHHHhH
Q 020346 269 ANEPAKCSFNNCLHLGEPGCVVKGD------WERYQYYFQLLDEIRIRE 311 (327)
Q Consensus 269 gGq~q~~~~~~~~h~~ep~~~v~~~------~~r~~~~~~ll~e~~~~~ 311 (327)
|||+||+++|+++ +.+|++++.|| |..-...+.+++++..+.
T Consensus 150 GGQQQRVaIARaL-~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~ 197 (258)
T COG3638 150 GGQQQRVAIARAL-VQQPKIILADEPVASLDPESAKKVMDILKDINQED 197 (258)
T ss_pred cchhHHHHHHHHH-hcCCCEEecCCcccccChhhHHHHHHHHHHHHHHc
Confidence 9999999999999 99999999884 456677777777776553
|
|
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.87 E-value=8.3e-23 Score=185.22 Aligned_cols=155 Identities=21% Similarity=0.213 Sum_probs=112.5
Q ss_pred CCceeeccCcchh----hHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeec
Q 020346 136 GYEPLFCSVESKL----GLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (327)
Q Consensus 136 ~~~~~~~s~~~~~----~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~ 210 (327)
..+.+.+.|+.+. +++++++.+ +|++++|+|+||||||||.++|+| +.+|++|+|.++|.++.
T Consensus 5 ~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~G------------l~~p~~G~I~~~G~~~~ 72 (252)
T COG1124 5 SVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAG------------LEKPSSGSILLDGKPLA 72 (252)
T ss_pred EEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhc------------ccCCCCceEEECCcccC
Confidence 3466777787766 999999998 999999999999999999999999 99999999999998876
Q ss_pred cccccCCCcceeeEEEEEEEccCCCeE---------EeCcccC----C------ccccccCH-hHHhhhhHHHHHhcCcc
Q 020346 211 EVSTKSGRGKHTTRHVSLLPLSGGGYL---------ADTPGFN----Q------PSLLKVTK-QSLAQTFPEIKEMLKAN 270 (327)
Q Consensus 211 ~~s~~~~~g~~tt~~i~~v~q~~~~~i---------~Dtpg~~----~------~~l~~~~~-~~l~~~~~~~~~~LSgG 270 (327)
.... .+...+.++||||++...+ +..|.-. . ..++.+.. .+....+|.. ||||
T Consensus 73 ~~~~----~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~e---LSGG 145 (252)
T COG1124 73 PKKR----AKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHE---LSGG 145 (252)
T ss_pred cccc----chhhccceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCchh---cChh
Confidence 5432 1236788999999873322 1111111 0 01111111 2333445554 9999
Q ss_pred ccccccccccccccCCceEEcccHH------HHHHHHHHHHHHHHh
Q 020346 271 EPAKCSFNNCLHLGEPGCVVKGDWE------RYQYYFQLLDEIRIR 310 (327)
Q Consensus 271 q~q~~~~~~~~h~~ep~~~v~~~~~------r~~~~~~ll~e~~~~ 310 (327)
|+||++|++++ ..+|+++|.|++. -.+....++.++++.
T Consensus 146 Q~QRiaIARAL-~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~ 190 (252)
T COG1124 146 QRQRIAIARAL-IPEPKLLILDEPTSALDVSVQAQILNLLLELKKE 190 (252)
T ss_pred HHHHHHHHHHh-ccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHh
Confidence 99999999999 7899999999663 445555666666544
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.86 E-value=9.8e-23 Score=184.37 Aligned_cols=158 Identities=16% Similarity=0.184 Sum_probs=125.8
Q ss_pred cCCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccc
Q 020346 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (327)
Q Consensus 135 ~~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s 213 (327)
+.++.++++|+++.+++++++.+ +|++++|+|+||+|||||+++|.| +++|++|+|+++|.++...+
T Consensus 9 I~vr~v~~~fG~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~G------------ll~P~~GeI~i~G~~i~~ls 76 (263)
T COG1127 9 IEVRGVTKSFGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILG------------LLRPDKGEILIDGEDIPQLS 76 (263)
T ss_pred EEEeeeeeecCCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhc------------cCCCCCCeEEEcCcchhccC
Confidence 34577899999999999999998 999999999999999999999999 99999999999999999887
Q ss_pred ccCCCcceeeEEEEEEEccC----CCeEEeCcccCCccc----------------cccCHh-HHhhhhHHHHHhcCcccc
Q 020346 214 TKSGRGKHTTRHVSLLPLSG----GGYLADTPGFNQPSL----------------LKVTKQ-SLAQTFPEIKEMLKANEP 272 (327)
Q Consensus 214 ~~~~~g~~tt~~i~~v~q~~----~~~i~Dtpg~~~~~l----------------~~~~~~-~l~~~~~~~~~~LSgGq~ 272 (327)
.... ...++++++++|.. .+++.||.+|..... +.+... ...+.||.- |||||+
T Consensus 77 ~~~~--~~ir~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsE---LSGGM~ 151 (263)
T COG1127 77 EEEL--YEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSE---LSGGMR 151 (263)
T ss_pred HHHH--HHHHhheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchh---hcchHH
Confidence 6431 12678899999975 457788887742211 111111 224566665 999999
Q ss_pred ccccccccccccCCceEEcccH------HHHHHHHHHHHHHHHh
Q 020346 273 AKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRIR 310 (327)
Q Consensus 273 q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~~ 310 (327)
+|+++|+++ ..+|.+++.|+| -....+-+|+.++++.
T Consensus 152 KRvaLARAi-aldPell~~DEPtsGLDPI~a~~~~~LI~~L~~~ 194 (263)
T COG1127 152 KRVALARAI-ALDPELLFLDEPTSGLDPISAGVIDELIRELNDA 194 (263)
T ss_pred HHHHHHHHH-hcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHh
Confidence 999999999 889999999855 4666777777777654
|
|
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.3e-22 Score=206.39 Aligned_cols=142 Identities=17% Similarity=0.310 Sum_probs=115.1
Q ss_pred cCCceeeccCcc---hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeec
Q 020346 135 WGYEPLFCSVES---KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (327)
Q Consensus 135 ~~~~~~~~s~~~---~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~ 210 (327)
+.|++++|+|.. .++++|+++.+ +|+++|+|||||+||||++++|.+ +|+|++|+|.+||.|+.
T Consensus 466 IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~r------------fY~PtsG~IllDG~~i~ 533 (716)
T KOG0058|consen 466 IEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLR------------FYDPTSGRILLDGVPIS 533 (716)
T ss_pred EEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHH------------hcCCCCCeEEECCeehh
Confidence 568999999975 45899999998 999999999999999999999999 99999999999999999
Q ss_pred cccccCCCcceeeEEEEEEEccC---CCeEEeCcccCCccccccCH---hHHhhhhHHHHH--------------hcCcc
Q 020346 211 EVSTKSGRGKHTTRHVSLLPLSG---GGYLADTPGFNQPSLLKVTK---QSLAQTFPEIKE--------------MLKAN 270 (327)
Q Consensus 211 ~~s~~~~~g~~tt~~i~~v~q~~---~~~i~Dtpg~~~~~l~~~~~---~~l~~~~~~~~~--------------~LSgG 270 (327)
++..+. .++++++|.|++ ++++.|+..+.......-+. .+.++...-+.+ .||||
T Consensus 534 ~~~~~~-----lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGG 608 (716)
T KOG0058|consen 534 DINHKY-----LRRKIGLVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGG 608 (716)
T ss_pred hcCHHH-----HHHHeeeeeccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccch
Confidence 998654 789999999987 66788888777653221111 122222222211 39999
Q ss_pred ccccccccccccccCCceEEcccH
Q 020346 271 EPAKCSFNNCLHLGEPGCVVKGDW 294 (327)
Q Consensus 271 q~q~~~~~~~~h~~ep~~~v~~~~ 294 (327)
|+||+++|+++ +.+|.++|+||.
T Consensus 609 QKQRIAIARAL-lr~P~VLILDEA 631 (716)
T KOG0058|consen 609 QKQRIAIARAL-LRNPRVLILDEA 631 (716)
T ss_pred HHHHHHHHHHH-hcCCCEEEEech
Confidence 99999999999 999999999953
|
|
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.86 E-value=8.3e-23 Score=202.07 Aligned_cols=134 Identities=22% Similarity=0.353 Sum_probs=112.2
Q ss_pred cCCceeeccCcchh-hHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccc
Q 020346 135 WGYEPLFCSVESKL-GLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV 212 (327)
Q Consensus 135 ~~~~~~~~s~~~~~-~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~ 212 (327)
+.|+.++++|+.++ +|+++++++ +|+.+||+|+|||||||+||+|.+ +++ .+|+|++||+++.++
T Consensus 352 I~F~dV~f~y~~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~Llr------------F~d-~sG~I~IdG~dik~~ 418 (591)
T KOG0057|consen 352 IEFDDVHFSYGPKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLR------------FFD-YSGSILIDGQDIKEV 418 (591)
T ss_pred EEEEeeEEEeCCCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHH------------Hhc-cCCcEEECCeeHhhh
Confidence 66889999998776 999999998 999999999999999999999999 999 999999999999999
Q ss_pred cccCCCcceeeEEEEEEEccCCCeEEeCcccCCccccccCHhHHhhhhHHHH---------------------------H
Q 020346 213 STKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIK---------------------------E 265 (327)
Q Consensus 213 s~~~~~g~~tt~~i~~v~q~~~~~i~Dtpg~~~~~l~~~~~~~l~~~~~~~~---------------------------~ 265 (327)
+... +++.++++|| |++.|.+..+.|+....+...++++. .
T Consensus 419 ~~~S-----lR~~Ig~VPQ-------d~~LFndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~ 486 (591)
T KOG0057|consen 419 SLES-----LRQSIGVVPQ-------DSVLFNDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGL 486 (591)
T ss_pred ChHH-----hhhheeEeCC-------cccccchhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhccc
Confidence 8765 8899999999 56677666655544333332222221 1
Q ss_pred hcCccccccccccccccccCCceEEcccH
Q 020346 266 MLKANEPAKCSFNNCLHLGEPGCVVKGDW 294 (327)
Q Consensus 266 ~LSgGq~q~~~~~~~~h~~ep~~~v~~~~ 294 (327)
.|||||+||+++++|+ +.+|.+.+.|++
T Consensus 487 ~LSGGekQrvslaRa~-lKda~Il~~DEa 514 (591)
T KOG0057|consen 487 MLSGGEKQRVSLARAF-LKDAPILLLDEA 514 (591)
T ss_pred ccccchHHHHHHHHHH-hcCCCeEEecCc
Confidence 3999999999999999 999999999865
|
|
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.8e-22 Score=175.84 Aligned_cols=149 Identities=18% Similarity=0.243 Sum_probs=105.2
Q ss_pred ceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccC
Q 020346 138 EPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKS 216 (327)
Q Consensus 138 ~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~ 216 (327)
..+.++|++.+- .+++.+ .|++++|+||||+|||||+|+++| |..|.+|+|+++|++.....+
T Consensus 5 ~~V~~~y~~~~~--~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAG------------F~~P~~G~i~i~g~d~t~~~P-- 68 (231)
T COG3840 5 DDVRFSYGHLPM--RFDLTVPAGEIVAILGPSGAGKSTLLNLIAG------------FETPASGEILINGVDHTASPP-- 68 (231)
T ss_pred cceEEeeCcceE--EEEEeecCCcEEEEECCCCccHHHHHHHHHh------------ccCCCCceEEEcCeecCcCCc--
Confidence 445566655331 122233 799999999999999999999999 999999999999999887765
Q ss_pred CCcceeeEEEEEEEccCCC----eEEeCcccCCc-cc--------------cccCHhHHhhhhHHHHHhcCccccccccc
Q 020346 217 GRGKHTTRHVSLLPLSGGG----YLADTPGFNQP-SL--------------LKVTKQSLAQTFPEIKEMLKANEPAKCSF 277 (327)
Q Consensus 217 ~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~-~l--------------~~~~~~~l~~~~~~~~~~LSgGq~q~~~~ 277 (327)
..+-+++++|+++. ++..+.|+... .+ ..+..+...+..|.. |||||+||+++
T Consensus 69 -----~~RPVSmlFQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~---LSGGqRQRvAL 140 (231)
T COG3840 69 -----AERPVSMLFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPGE---LSGGQRQRVAL 140 (231)
T ss_pred -----ccCChhhhhhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCccc---cCchHHHHHHH
Confidence 45678999999765 44555555422 11 112223333344444 99999999999
Q ss_pred cccccccCCceEEcccH------HHHHHHHHHHHHHHHhH
Q 020346 278 NNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRIRE 311 (327)
Q Consensus 278 ~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~~~ 311 (327)
++|+ +.+.-++++|+| .=.+..+.++..+....
T Consensus 141 ARcl-vR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~ 179 (231)
T COG3840 141 ARCL-VREQPILLLDEPFSALDPALRAEMLALVSQLCDER 179 (231)
T ss_pred HHHH-hccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhh
Confidence 9999 888888888854 33345556666665543
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.3e-22 Score=186.37 Aligned_cols=151 Identities=19% Similarity=0.243 Sum_probs=118.5
Q ss_pred CceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecce---eeccc
Q 020346 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQ---RVGEV 212 (327)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~---~v~~~ 212 (327)
.+.+...|+...+++++++.+ .|+.++++|||||||||||++|+| +..|++|.|.+||. ++..+
T Consensus 5 i~~~~~~~~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAG------------Le~p~~G~I~~~~~~l~D~~~~ 72 (345)
T COG1118 5 INNVKKRFGAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAG------------LETPDAGRIRLNGRVLFDVSNL 72 (345)
T ss_pred ehhhhhhcccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhC------------cCCCCCceEEECCEeccchhcc
Confidence 344556667777888999998 899999999999999999999999 99999999999999 55554
Q ss_pred cccCCCcceeeEEEEEEEccC----CCeEEeCcccCCcc-----------------ccccCHhHHhhhhHHHHHhcCccc
Q 020346 213 STKSGRGKHTTRHVSLLPLSG----GGYLADTPGFNQPS-----------------LLKVTKQSLAQTFPEIKEMLKANE 271 (327)
Q Consensus 213 s~~~~~g~~tt~~i~~v~q~~----~~~i~Dtpg~~~~~-----------------l~~~~~~~l~~~~~~~~~~LSgGq 271 (327)
+. ..+++|+++|+. .+++.|+..|.... +..+..+.+.+.+|.. |||||
T Consensus 73 ~~-------~~R~VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~Q---LSGGQ 142 (345)
T COG1118 73 AV-------RDRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQ---LSGGQ 142 (345)
T ss_pred ch-------hhcceeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchh---cChHH
Confidence 32 457899999975 66788888876521 2234455677778877 99999
Q ss_pred cccccccccccccCCceEEcccHH------HHHHHHHHHHHHHHh
Q 020346 272 PAKCSFNNCLHLGEPGCVVKGDWE------RYQYYFQLLDEIRIR 310 (327)
Q Consensus 272 ~q~~~~~~~~h~~ep~~~v~~~~~------r~~~~~~ll~e~~~~ 310 (327)
+||+++|+++ .-||.++++|+|. -...+++-|.++.++
T Consensus 143 rQRVALARAL-A~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~ 186 (345)
T COG1118 143 RQRVALARAL-AVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDR 186 (345)
T ss_pred HHHHHHHHHh-hcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHh
Confidence 9999999999 8999999999663 334445555555443
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.85 E-value=2e-22 Score=179.48 Aligned_cols=162 Identities=15% Similarity=0.229 Sum_probs=114.6
Q ss_pred cCCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCccccccccc--ccccceeecceeecc
Q 020346 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFE--PILGSKWFEDQRVGE 211 (327)
Q Consensus 135 ~~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~--p~~G~i~~~g~~v~~ 211 (327)
+..+.+.+.|+++++|+++++.+ +++++||+|||||||||||++|..... +++ -.+|+|+++|+++..
T Consensus 8 ~~~~~l~~yYg~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmnd---------l~~~~r~~G~v~~~g~ni~~ 78 (253)
T COG1117 8 IEVRDLNLYYGDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMND---------LIPGARVEGEVLLDGKNIYD 78 (253)
T ss_pred eEecceeEEECchhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcc---------cCcCceEEEEEEECCeeccC
Confidence 34567888999999999999998 899999999999999999999998332 222 135999999999876
Q ss_pred ccccCCCcceeeEEEEEEEccCC---CeEEeCcccCCcc--ccc-----cCHh--HHhhhhHHHHH-------hcCcccc
Q 020346 212 VSTKSGRGKHTTRHVSLLPLSGG---GYLADTPGFNQPS--LLK-----VTKQ--SLAQTFPEIKE-------MLKANEP 272 (327)
Q Consensus 212 ~s~~~~~g~~tt~~i~~v~q~~~---~~i~Dtpg~~~~~--l~~-----~~~~--~l~~~~~~~~~-------~LSgGq~ 272 (327)
..... -..++.+|||+|.++ .++.|+..+.... ..+ +-.. ..+....|... .|||||+
T Consensus 79 ~~~d~---~~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQ 155 (253)
T COG1117 79 PKVDV---VELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQ 155 (253)
T ss_pred CCCCH---HHHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHH
Confidence 53221 127889999999864 4677776554221 111 0000 11112222221 2899999
Q ss_pred ccccccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 273 AKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 273 q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
||+.+|+++ .-+|.++++|+| -.-....+++.|+++
T Consensus 156 QRLcIARal-Av~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~ 197 (253)
T COG1117 156 QRLCIARAL-AVKPEVLLMDEPTSALDPISTLKIEELITELKK 197 (253)
T ss_pred HHHHHHHHH-hcCCcEEEecCcccccCchhHHHHHHHHHHHHh
Confidence 999999999 889999999955 355555667777763
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.6e-22 Score=207.14 Aligned_cols=142 Identities=19% Similarity=0.314 Sum_probs=117.6
Q ss_pred cCCceeeccCcch--hhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecc
Q 020346 135 WGYEPLFCSVESK--LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (327)
Q Consensus 135 ~~~~~~~~s~~~~--~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~ 211 (327)
+.++.++++|... .+++++++.+ +|++++|||+||||||||+|+|.| +|+|++|+|.+||.+++.
T Consensus 472 I~~~nvsf~y~~~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~g------------ly~p~~G~I~~dg~dl~~ 539 (709)
T COG2274 472 IEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLG------------LYKPQQGRILLDGVDLND 539 (709)
T ss_pred EEEEEEEEEeCCCCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhc------------CCCCCCceEEECCEeHHh
Confidence 5688899999754 6999999998 899999999999999999999999 999999999999999999
Q ss_pred ccccCCCcceeeEEEEEEEccC---CCeEEeCcccCCcccccc---CHhHHhhhhHHHHHh--------------cCccc
Q 020346 212 VSTKSGRGKHTTRHVSLLPLSG---GGYLADTPGFNQPSLLKV---TKQSLAQTFPEIKEM--------------LKANE 271 (327)
Q Consensus 212 ~s~~~~~g~~tt~~i~~v~q~~---~~~i~Dtpg~~~~~l~~~---~~~~l~~~~~~~~~~--------------LSgGq 271 (327)
++... .++.+++++|++ .+++.|+..+..+....- +...++...+.+.+. |||||
T Consensus 540 i~~~~-----lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQ 614 (709)
T COG2274 540 IDLAS-----LRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQ 614 (709)
T ss_pred cCHHH-----HHhheeEEcccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHH
Confidence 98765 899999999985 567778777776654321 122333333444332 99999
Q ss_pred cccccccccccccCCceEEcccH
Q 020346 272 PAKCSFNNCLHLGEPGCVVKGDW 294 (327)
Q Consensus 272 ~q~~~~~~~~h~~ep~~~v~~~~ 294 (327)
+||+++|+++ +++|.++++||+
T Consensus 615 rQrlalARaL-l~~P~ILlLDEa 636 (709)
T COG2274 615 RQRLALARAL-LSKPKILLLDEA 636 (709)
T ss_pred HHHHHHHHHh-ccCCCEEEEeCc
Confidence 9999999999 999999999954
|
|
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.8e-22 Score=201.91 Aligned_cols=143 Identities=19% Similarity=0.289 Sum_probs=110.2
Q ss_pred hcCCceeeccCcc-hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecc
Q 020346 134 TWGYEPLFCSVES-KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (327)
Q Consensus 134 ~~~~~~~~~s~~~-~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~ 211 (327)
.+.++.++++|.+ +.+++++++.+ +|++++|+||||||||||+|+|+| +++|++|+|.+||.++.+
T Consensus 334 ~I~~~~vsf~Y~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g------------~~~p~~G~I~i~g~~i~~ 401 (529)
T TIGR02868 334 TLELRDLSFGYPGSPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTG------------LLDPLQGEVTLDGVSVSS 401 (529)
T ss_pred eEEEEEEEEecCCCCceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhc------------CCCCCCcEEEECCEEhhh
Confidence 3668889999965 46899999998 999999999999999999999999 999999999999999998
Q ss_pred ccccCCCcceeeEEEEEEEccC---CCeEEeCcccCCcccccc---------CHhHHhhhhHH--------HHHhcCccc
Q 020346 212 VSTKSGRGKHTTRHVSLLPLSG---GGYLADTPGFNQPSLLKV---------TKQSLAQTFPE--------IKEMLKANE 271 (327)
Q Consensus 212 ~s~~~~~g~~tt~~i~~v~q~~---~~~i~Dtpg~~~~~l~~~---------~~~~l~~~~~~--------~~~~LSgGq 271 (327)
+ ... .+++++++||++ ++++.|+..+..+...+- ...+.-..+|+ -...|||||
T Consensus 402 ~-~~~-----lr~~i~~V~Q~~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQ 475 (529)
T TIGR02868 402 L-QDE-----LRRRISVFAQDAHLFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGE 475 (529)
T ss_pred H-HHH-----HHhheEEEccCcccccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHH
Confidence 8 554 788999999986 445666655543221110 11111111111 012399999
Q ss_pred cccccccccccccCCceEEcccHH
Q 020346 272 PAKCSFNNCLHLGEPGCVVKGDWE 295 (327)
Q Consensus 272 ~q~~~~~~~~h~~ep~~~v~~~~~ 295 (327)
+||+++|+++ +.+|.++|+||+.
T Consensus 476 rQRiaiARal-l~~~~iliLDE~T 498 (529)
T TIGR02868 476 RQRLALARAL-LADAPILLLDEPT 498 (529)
T ss_pred HHHHHHHHHH-hcCCCEEEEeCCc
Confidence 9999999999 9999999999653
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.9e-21 Score=178.42 Aligned_cols=154 Identities=18% Similarity=0.255 Sum_probs=116.4
Q ss_pred CceeeccCcch-hhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecc-cc
Q 020346 137 YEPLFCSVESK-LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE-VS 213 (327)
Q Consensus 137 ~~~~~~s~~~~-~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~-~s 213 (327)
++.++++|.+. .+++++++.+ +|+.++|+|+||||||||+++|.| +++|++|.|+++|.++.. .+
T Consensus 6 ~~~l~~~y~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~G------------Ll~p~~G~v~~~g~~~~~~~~ 73 (235)
T COG1122 6 AENLSFRYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNG------------LLKPTSGEVLVDGLDTSSEKS 73 (235)
T ss_pred EEEEEEEcCCCceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcC------------cCcCCCCEEEECCeeccchhh
Confidence 56788888775 8999999998 799999999999999999999999 999999999999998773 33
Q ss_pred ccCCCcceeeEEEEEEEccCCCeEEeC-----cccCCccc---------------cccCHhHHhhhhHHHHHhcCccccc
Q 020346 214 TKSGRGKHTTRHVSLLPLSGGGYLADT-----PGFNQPSL---------------LKVTKQSLAQTFPEIKEMLKANEPA 273 (327)
Q Consensus 214 ~~~~~g~~tt~~i~~v~q~~~~~i~Dt-----pg~~~~~l---------------~~~~~~~l~~~~~~~~~~LSgGq~q 273 (327)
... .++.+++++|++...++.. ..|....+ +.+...++.+..|. .|||||+|
T Consensus 74 ~~~-----~~~~vG~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~---~LSGGqkq 145 (235)
T COG1122 74 LLE-----LRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPF---NLSGGQKQ 145 (235)
T ss_pred HHH-----hhcceEEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCcc---ccCCccee
Confidence 222 6889999999985543322 22221111 11111222223332 39999999
Q ss_pred cccccccccccCCceEEcc------cHHHHHHHHHHHHHHHHhH
Q 020346 274 KCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIRE 311 (327)
Q Consensus 274 ~~~~~~~~h~~ep~~~v~~------~~~r~~~~~~ll~e~~~~~ 311 (327)
|++||..+ ..+|.++|+| |+.......++++++....
T Consensus 146 RvaIA~vL-a~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~ 188 (235)
T COG1122 146 RVAIAGVL-AMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEG 188 (235)
T ss_pred eHHhhHHH-HcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcC
Confidence 99999777 9999999999 4568888888888887663
|
|
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.6e-21 Score=178.20 Aligned_cols=158 Identities=16% Similarity=0.201 Sum_probs=108.4
Q ss_pred CceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccccc
Q 020346 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (327)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~ 215 (327)
++.+.++|++..+++++++.+ +|++++|+|+||||||||+|+|+| +++|++|+|.++|.++...+..
T Consensus 3 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G------------~~~p~~G~i~~~g~~~~~~~~~ 70 (235)
T cd03261 3 LRGLTKSFGGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVG------------LLRPDSGEVLIDGEDISGLSEA 70 (235)
T ss_pred EEEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhC------------CCCCCceEEEECCEEccccChh
Confidence 456777887778999999998 999999999999999999999999 8999999999999987654321
Q ss_pred CCCcceeeEEEEEEEccCCC----eEEeCcccCCccccccCHh-------------HHhhhhHHHHHhcCcccccccccc
Q 020346 216 SGRGKHTTRHVSLLPLSGGG----YLADTPGFNQPSLLKVTKQ-------------SLAQTFPEIKEMLKANEPAKCSFN 278 (327)
Q Consensus 216 ~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~~l~~~~~~-------------~l~~~~~~~~~~LSgGq~q~~~~~ 278 (327)
. ....++.++|+||.+.. ++.|+..+........... .+..........|||||+||+.++
T Consensus 71 ~--~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia 148 (235)
T cd03261 71 E--LYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALA 148 (235)
T ss_pred h--HHHHhcceEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHH
Confidence 0 01145679999997532 2223222110000000000 000000111234999999999999
Q ss_pred ccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 279 NCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 279 ~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
+++ +.+|.++|+|+| ...+.+.++++++..
T Consensus 149 ~al-~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~ 184 (235)
T cd03261 149 RAL-ALDPELLLYDEPTAGLDPIASGVIDDLIRSLKK 184 (235)
T ss_pred HHH-hcCCCEEEecCCcccCCHHHHHHHHHHHHHHHH
Confidence 999 999999999965 456666667776654
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=8e-22 Score=191.12 Aligned_cols=151 Identities=15% Similarity=0.249 Sum_probs=111.5
Q ss_pred cCCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccc
Q 020346 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (327)
Q Consensus 135 ~~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s 213 (327)
+.++.+.++|++..+++++++.+ +|++++|+||||||||||+++|+| +++|++|+|.++|.++...+
T Consensus 7 l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaG------------l~~p~~G~I~~~g~~i~~~~ 74 (351)
T PRK11432 7 VVLKNITKRFGSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAG------------LEKPTEGQIFIDGEDVTHRS 74 (351)
T ss_pred EEEEeEEEEECCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHC------------CCCCCceEEEECCEECCCCC
Confidence 34677888888778899999998 899999999999999999999999 99999999999999887654
Q ss_pred ccCCCcceeeEEEEEEEccCC----CeEEeCcccCCc---------------cccccCHhHHhhhhHHHHHhcCcccccc
Q 020346 214 TKSGRGKHTTRHVSLLPLSGG----GYLADTPGFNQP---------------SLLKVTKQSLAQTFPEIKEMLKANEPAK 274 (327)
Q Consensus 214 ~~~~~g~~tt~~i~~v~q~~~----~~i~Dtpg~~~~---------------~l~~~~~~~l~~~~~~~~~~LSgGq~q~ 274 (327)
. ..+.++|++|++. .++.|+..+... .++.+....+.+..+. .|||||+||
T Consensus 75 ~-------~~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~---~LSgGq~QR 144 (351)
T PRK11432 75 I-------QQRDICMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVD---QISGGQQQR 144 (351)
T ss_pred H-------HHCCEEEEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChh---hCCHHHHHH
Confidence 2 3467999999753 344454443211 0111122222333333 399999999
Q ss_pred ccccccccccCCceEEcccH------HHHHHHHHHHHHHH
Q 020346 275 CSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIR 308 (327)
Q Consensus 275 ~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~ 308 (327)
+++++++ +.+|+++++|+| .-.+.++..++++.
T Consensus 145 VaLARaL-~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~ 183 (351)
T PRK11432 145 VALARAL-ILKPKVLLFDEPLSNLDANLRRSMREKIRELQ 183 (351)
T ss_pred HHHHHHH-HcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH
Confidence 9999999 999999999965 34444555555553
|
|
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=9.3e-22 Score=191.04 Aligned_cols=152 Identities=14% Similarity=0.195 Sum_probs=111.1
Q ss_pred cCCceeeccC-cchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccc
Q 020346 135 WGYEPLFCSV-ESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV 212 (327)
Q Consensus 135 ~~~~~~~~s~-~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~ 212 (327)
+.++.+.++| ++..+++++++.+ +|++++|+||||||||||+++|+| +.+|++|+|+++|.++...
T Consensus 4 l~i~~l~~~~~~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaG------------l~~p~~G~I~~~g~~i~~~ 71 (356)
T PRK11650 4 LKLQAVRKSYDGKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAG------------LERITSGEIWIGGRVVNEL 71 (356)
T ss_pred EEEEeEEEEeCCCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHC------------CCCCCceEEEECCEECCCC
Confidence 3456778888 6677999999998 899999999999999999999999 8999999999999998765
Q ss_pred cccCCCcceeeEEEEEEEccCC----CeEEeCcccCCcc---------------ccccCHhHHhhhhHHHHHhcCccccc
Q 020346 213 STKSGRGKHTTRHVSLLPLSGG----GYLADTPGFNQPS---------------LLKVTKQSLAQTFPEIKEMLKANEPA 273 (327)
Q Consensus 213 s~~~~~g~~tt~~i~~v~q~~~----~~i~Dtpg~~~~~---------------l~~~~~~~l~~~~~~~~~~LSgGq~q 273 (327)
+. ..+.++|+||++. .++.|+..+.... ++.+.+.++.+..+. .|||||+|
T Consensus 72 ~~-------~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~---~LSgGq~Q 141 (356)
T PRK11650 72 EP-------ADRDIAMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPR---ELSGGQRQ 141 (356)
T ss_pred CH-------HHCCEEEEeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChh---hCCHHHHH
Confidence 43 2367999999752 3344444332110 111122222333333 39999999
Q ss_pred cccccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 274 KCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 274 ~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
|+++++++ +.+|.++++|+| ...+.+++.++++..
T Consensus 142 RvalARAL-~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~ 182 (356)
T PRK11650 142 RVAMGRAI-VREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHR 182 (356)
T ss_pred HHHHHHHH-hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence 99999999 999999999965 344455555555543
|
|
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.7e-21 Score=175.46 Aligned_cols=152 Identities=18% Similarity=0.231 Sum_probs=106.4
Q ss_pred CceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccccc
Q 020346 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (327)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~ 215 (327)
++.+.++|.+..+++++++.+ +|++++|+|+||||||||+++|+| +++|++|+|.++|.++...+.
T Consensus 3 ~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G------------~~~p~~G~i~~~g~~~~~~~~- 69 (213)
T cd03259 3 LKGLSKTYGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAG------------LERPDSGEILIDGRDVTGVPP- 69 (213)
T ss_pred eeeeEEEeCCeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhC------------CCCCCCeEEEECCEEcCcCch-
Confidence 456777887778999999998 999999999999999999999999 899999999999998764331
Q ss_pred CCCcceeeEEEEEEEccCC----CeEEeCcccCCccccccCH-------hH------HhhhhHHHHHhcCcccccccccc
Q 020346 216 SGRGKHTTRHVSLLPLSGG----GYLADTPGFNQPSLLKVTK-------QS------LAQTFPEIKEMLKANEPAKCSFN 278 (327)
Q Consensus 216 ~~~g~~tt~~i~~v~q~~~----~~i~Dtpg~~~~~l~~~~~-------~~------l~~~~~~~~~~LSgGq~q~~~~~ 278 (327)
..+.++++||.+. .++.|+..+..... .... .+ +..........|||||+||+.++
T Consensus 70 ------~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la 142 (213)
T cd03259 70 ------ERRNIGMVFQDYALFPHLTVAENIAFGLKLR-GVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALA 142 (213)
T ss_pred ------hhccEEEEcCchhhccCCcHHHHHHhHHHHc-CCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHH
Confidence 2456899999752 22223222110000 0000 00 10111111234999999999999
Q ss_pred ccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 279 NCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 279 ~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
+++ +.+|.++++|+| .....+.+++.++..
T Consensus 143 ~al-~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~ 178 (213)
T cd03259 143 RAL-AREPSLLLLDEPLSALDAKLREELREELKELQR 178 (213)
T ss_pred HHH-hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH
Confidence 999 999999999965 455556666666644
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.6e-21 Score=199.69 Aligned_cols=142 Identities=20% Similarity=0.323 Sum_probs=112.5
Q ss_pred cCCceeeccCc-chhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccc
Q 020346 135 WGYEPLFCSVE-SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV 212 (327)
Q Consensus 135 ~~~~~~~~s~~-~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~ 212 (327)
+.|+.++++|. ++++++++++.+ +|+++|||||||||||||+|+|.+ +|+|++|+|.+||+++.++
T Consensus 329 I~f~~vsf~y~~~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r------------~~~~~~G~I~idg~dI~~i 396 (567)
T COG1132 329 IEFENVSFSYPGKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLR------------LYDPTSGEILIDGIDIRDI 396 (567)
T ss_pred EEEEEEEEEcCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhc------------cCCCCCCeEEECCEehhhc
Confidence 56889999998 689999999998 999999999999999999999999 9999999999999999999
Q ss_pred cccCCCcceeeEEEEEEEccC---CCeEEeCcccCCccccccCH---hHHhhhhHHHH--------------HhcCcccc
Q 020346 213 STKSGRGKHTTRHVSLLPLSG---GGYLADTPGFNQPSLLKVTK---QSLAQTFPEIK--------------EMLKANEP 272 (327)
Q Consensus 213 s~~~~~g~~tt~~i~~v~q~~---~~~i~Dtpg~~~~~l~~~~~---~~l~~~~~~~~--------------~~LSgGq~ 272 (327)
+... .+++++++||++ ++++.|+..+..+...+-+. .+.+...+.+. ..|||||+
T Consensus 397 ~~~~-----lr~~I~~V~Qd~~LF~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQr 471 (567)
T COG1132 397 SLDS-----LRKRIGIVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQR 471 (567)
T ss_pred CHHH-----HHHhccEEcccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHH
Confidence 8765 789999999975 44556666655443211011 01111111111 23999999
Q ss_pred ccccccccccccCCceEEcccH
Q 020346 273 AKCSFNNCLHLGEPGCVVKGDW 294 (327)
Q Consensus 273 q~~~~~~~~h~~ep~~~v~~~~ 294 (327)
||+++|+++ +.+|.++|+||+
T Consensus 472 QrlaiARal-l~~~~ILILDEa 492 (567)
T COG1132 472 QRLAIARAL-LRNPPILILDEA 492 (567)
T ss_pred HHHHHHHHH-hcCCCEEEEecc
Confidence 999999999 999999999965
|
|
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.5e-21 Score=184.38 Aligned_cols=156 Identities=15% Similarity=0.199 Sum_probs=111.7
Q ss_pred cCCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccc
Q 020346 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (327)
Q Consensus 135 ~~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s 213 (327)
+.++.+.++|++..+++++++.+ +|++++|+||||||||||+++|+| +++|++|+|+++|.++...+
T Consensus 8 i~i~~l~k~~~~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~G------------l~~p~~G~v~i~G~~~~~~~ 75 (306)
T PRK13537 8 IDFRNVEKRYGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLG------------LTHPDAGSISLCGEPVPSRA 75 (306)
T ss_pred EEEEeEEEEECCeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhc------------CCCCCceEEEECCEecccch
Confidence 34577888888888999999998 899999999999999999999999 89999999999999886543
Q ss_pred ccCCCcceeeEEEEEEEccCCC----eEEeCcccCCccccccCHh-------------HHhhhhHHHHHhcCcccccccc
Q 020346 214 TKSGRGKHTTRHVSLLPLSGGG----YLADTPGFNQPSLLKVTKQ-------------SLAQTFPEIKEMLKANEPAKCS 276 (327)
Q Consensus 214 ~~~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~~l~~~~~~-------------~l~~~~~~~~~~LSgGq~q~~~ 276 (327)
.. .++.++|+||++.. ++.|+..+... +...... ++..........||+||+||+.
T Consensus 76 ~~------~~~~ig~v~q~~~~~~~~tv~e~l~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~ 148 (306)
T PRK13537 76 RH------ARQRVGVVPQFDNLDPDFTVRENLLVFGR-YFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLT 148 (306)
T ss_pred HH------HHhcEEEEeccCcCCCCCcHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHH
Confidence 21 46789999997532 22233221110 0000000 0111111112359999999999
Q ss_pred ccccccccCCceEEcccH------HHHHHHHHHHHHHHHh
Q 020346 277 FNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRIR 310 (327)
Q Consensus 277 ~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~~ 310 (327)
+++++ +++|.++++|+| .-...+.+++++++..
T Consensus 149 la~aL-~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~ 187 (306)
T PRK13537 149 LARAL-VNDPDVLVLDEPTTGLDPQARHLMWERLRSLLAR 187 (306)
T ss_pred HHHHH-hCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhC
Confidence 99999 999999999954 4555566677777543
|
|
| >KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.82 E-value=6.5e-22 Score=193.29 Aligned_cols=143 Identities=21% Similarity=0.326 Sum_probs=112.0
Q ss_pred hcCCceeeccCc-chhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecc
Q 020346 134 TWGYEPLFCSVE-SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (327)
Q Consensus 134 ~~~~~~~~~s~~-~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~ 211 (327)
.+.|++++|+|. .+++++|++|.+ +|+++|+|||||+||||++++|.+ +++.++|+|.+||+++..
T Consensus 537 ~i~fsnvtF~Y~p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfR------------ffdv~sGsI~iDgqdIrn 604 (790)
T KOG0056|consen 537 KIEFSNVTFAYDPGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFR------------FFDVNSGSITIDGQDIRN 604 (790)
T ss_pred eEEEEEeEEecCCCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHH------------HhhccCceEEEcCchHHH
Confidence 356888999996 578999999998 999999999999999999999999 999999999999999998
Q ss_pred ccccCCCcceeeEEEEEEEccC---CCeEEeCcccCCccccccCHhHH---hh------hhHHHHH--------hcCccc
Q 020346 212 VSTKSGRGKHTTRHVSLLPLSG---GGYLADTPGFNQPSLLKVTKQSL---AQ------TFPEIKE--------MLKANE 271 (327)
Q Consensus 212 ~s~~~~~g~~tt~~i~~v~q~~---~~~i~Dtpg~~~~~l~~~~~~~l---~~------~~~~~~~--------~LSgGq 271 (327)
+...+ .+++||.+||+. +.++.++..+..+...+-+.... +. .|||-.+ .|||||
T Consensus 605 vt~~S-----LRs~IGVVPQDtvLFNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGE 679 (790)
T KOG0056|consen 605 VTQSS-----LRSSIGVVPQDTVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGE 679 (790)
T ss_pred HHHHH-----HHHhcCcccCcceeecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcc
Confidence 87665 789999999963 34455555555544333222111 11 2232211 289999
Q ss_pred cccccccccccccCCceEEcccH
Q 020346 272 PAKCSFNNCLHLGEPGCVVKGDW 294 (327)
Q Consensus 272 ~q~~~~~~~~h~~ep~~~v~~~~ 294 (327)
+||+++|+.+ +..|.++++|+.
T Consensus 680 KQRVAiARti-LK~P~iIlLDEA 701 (790)
T KOG0056|consen 680 KQRVAIARTI-LKAPSIILLDEA 701 (790)
T ss_pred hhhHHHHHHH-hcCCcEEEEcch
Confidence 9999999999 999999999854
|
|
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.5e-21 Score=188.70 Aligned_cols=157 Identities=18% Similarity=0.213 Sum_probs=112.2
Q ss_pred CCceeeccCcc----hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeec
Q 020346 136 GYEPLFCSVES----KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (327)
Q Consensus 136 ~~~~~~~s~~~----~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~ 210 (327)
.++.+.++|.. ..+++++++.+ +|++++|+|+||||||||+++|.| +.+|++|+|+++|.++.
T Consensus 3 ~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~g------------l~~p~~G~I~i~G~~i~ 70 (343)
T TIGR02314 3 KLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNL------------LERPTSGSVIVDGQDLT 70 (343)
T ss_pred EEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhc------------CCCCCceEEEECCEECC
Confidence 35667777742 36899999998 899999999999999999999999 99999999999999887
Q ss_pred cccccCCCcceeeEEEEEEEccCCC----eEEeCcccCCc---------------cccccCHhHHhhhhHHHHHhcCccc
Q 020346 211 EVSTKSGRGKHTTRHVSLLPLSGGG----YLADTPGFNQP---------------SLLKVTKQSLAQTFPEIKEMLKANE 271 (327)
Q Consensus 211 ~~s~~~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~---------------~l~~~~~~~l~~~~~~~~~~LSgGq 271 (327)
..+.... +..++.++|+||.+.. ++.|+..+... .++.+...+..+..+. .|||||
T Consensus 71 ~~~~~~l--~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~---~LSgGq 145 (343)
T TIGR02314 71 TLSNSEL--TKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPS---NLSGGQ 145 (343)
T ss_pred cCCHHHH--HHHhcCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChh---hCCHHH
Confidence 6543210 1135689999998533 23333322110 0111112222233333 399999
Q ss_pred cccccccccccccCCceEEccc------HHHHHHHHHHHHHHHHh
Q 020346 272 PAKCSFNNCLHLGEPGCVVKGD------WERYQYYFQLLDEIRIR 310 (327)
Q Consensus 272 ~q~~~~~~~~h~~ep~~~v~~~------~~r~~~~~~ll~e~~~~ 310 (327)
+||+.+++++ +.+|.++++|+ +...+...++++++...
T Consensus 146 kQRV~IARAL-~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~ 189 (343)
T TIGR02314 146 KQRVAIARAL-ASNPKVLLCDEATSALDPATTQSILELLKEINRR 189 (343)
T ss_pred HHHHHHHHHH-HhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh
Confidence 9999999999 89999999994 45666777777777543
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.82 E-value=2e-21 Score=189.90 Aligned_cols=152 Identities=17% Similarity=0.243 Sum_probs=112.5
Q ss_pred cCCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccc
Q 020346 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (327)
Q Consensus 135 ~~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s 213 (327)
+.++.+.++|++..+++++++.+ +|++++|+||||||||||+++|+| +++|++|+|+++|.++...+
T Consensus 15 L~l~~l~~~~~~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaG------------l~~p~~G~I~~~g~~i~~~~ 82 (375)
T PRK09452 15 VELRGISKSFDGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAG------------FETPDSGRIMLDGQDITHVP 82 (375)
T ss_pred EEEEEEEEEECCeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhC------------CCCCCceEEEECCEECCCCC
Confidence 45677888888778899999998 899999999999999999999999 99999999999999887654
Q ss_pred ccCCCcceeeEEEEEEEccCC----CeEEeCcccCCcc---------------ccccCHhHHhhhhHHHHHhcCcccccc
Q 020346 214 TKSGRGKHTTRHVSLLPLSGG----GYLADTPGFNQPS---------------LLKVTKQSLAQTFPEIKEMLKANEPAK 274 (327)
Q Consensus 214 ~~~~~g~~tt~~i~~v~q~~~----~~i~Dtpg~~~~~---------------l~~~~~~~l~~~~~~~~~~LSgGq~q~ 274 (327)
. ..+.++|++|++. .++.|+..+.... ++.+.+..+.+..|. .|||||+||
T Consensus 83 ~-------~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~---~LSgGq~QR 152 (375)
T PRK09452 83 A-------ENRHVNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPH---QLSGGQQQR 152 (375)
T ss_pred H-------HHCCEEEEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChh---hCCHHHHHH
Confidence 3 2357999999853 3444554432110 111122223333333 399999999
Q ss_pred ccccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 275 CSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 275 ~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
+++++++ +.+|+++++|+| ...+.++..++++..
T Consensus 153 VaLARaL-~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~ 192 (375)
T PRK09452 153 VAIARAV-VNKPKVLLLDESLSALDYKLRKQMQNELKALQR 192 (375)
T ss_pred HHHHHHH-hcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH
Confidence 9999999 999999999965 344445555555543
|
|
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.6e-21 Score=175.12 Aligned_cols=151 Identities=13% Similarity=0.157 Sum_probs=106.1
Q ss_pred CceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccccc
Q 020346 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (327)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~ 215 (327)
++.+.++|++..+++++++.+ +|++++|+|+||||||||+++|+| +++|++|+|+++|.++...+ .
T Consensus 3 ~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G------------~~~~~~G~i~~~g~~~~~~~-~ 69 (220)
T cd03265 3 VENLVKKYGDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTT------------LLKPTSGRATVAGHDVVREP-R 69 (220)
T ss_pred EEEEEEEECCEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhC------------CCCCCceEEEECCEecCcCh-H
Confidence 456777887778999999998 999999999999999999999999 88999999999998765422 1
Q ss_pred CCCcceeeEEEEEEEccCCC----eEEeCcccCCc--c-------------ccccCHhHHhhhhHHHHHhcCcccccccc
Q 020346 216 SGRGKHTTRHVSLLPLSGGG----YLADTPGFNQP--S-------------LLKVTKQSLAQTFPEIKEMLKANEPAKCS 276 (327)
Q Consensus 216 ~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~--~-------------l~~~~~~~l~~~~~~~~~~LSgGq~q~~~ 276 (327)
. ..+.++++||++.. ++.|+..+... . ++.+......+.. ...|||||+||+.
T Consensus 70 ~-----~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---~~~LS~G~~qr~~ 141 (220)
T cd03265 70 E-----VRRRIGIVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRL---VKTYSGGMRRRLE 141 (220)
T ss_pred H-----HhhcEEEecCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCC---hhhCCHHHHHHHH
Confidence 1 34578999997532 12222111000 0 0001111111111 2349999999999
Q ss_pred ccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 277 FNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 277 ~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
+++++ +.+|.++++|+| ...+.+.+++.++..
T Consensus 142 la~al-~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~ 179 (220)
T cd03265 142 IARSL-VHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKE 179 (220)
T ss_pred HHHHH-hcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHH
Confidence 99999 999999999965 455666666766644
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.8e-21 Score=188.92 Aligned_cols=151 Identities=13% Similarity=0.220 Sum_probs=110.7
Q ss_pred cCCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccc
Q 020346 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (327)
Q Consensus 135 ~~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s 213 (327)
+.++.+.++|++..+++++++.+ +|++++|+||||||||||+++|+| +.+|++|+|.++|+++...+
T Consensus 5 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaG------------l~~p~~G~I~i~g~~~~~~~ 72 (353)
T TIGR03265 5 LSIDNIRKRFGAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAG------------LERQTAGTIYQGGRDITRLP 72 (353)
T ss_pred EEEEEEEEEeCCeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHC------------CCCCCceEEEECCEECCCCC
Confidence 34567888888878899999998 899999999999999999999999 89999999999999886544
Q ss_pred ccCCCcceeeEEEEEEEccCC----CeEEeCcccCCcc---------------ccccCHhHHhhhhHHHHHhcCcccccc
Q 020346 214 TKSGRGKHTTRHVSLLPLSGG----GYLADTPGFNQPS---------------LLKVTKQSLAQTFPEIKEMLKANEPAK 274 (327)
Q Consensus 214 ~~~~~g~~tt~~i~~v~q~~~----~~i~Dtpg~~~~~---------------l~~~~~~~l~~~~~~~~~~LSgGq~q~ 274 (327)
. ..+.++|++|++. +++.++..+.... ++.+.+..+.+..+. .|||||+||
T Consensus 73 ~-------~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~---~LSgGq~QR 142 (353)
T TIGR03265 73 P-------QKRDYGIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPG---QLSGGQQQR 142 (353)
T ss_pred H-------HHCCEEEEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChh---hCCHHHHHH
Confidence 2 2457999999752 3444444332110 111112222233333 399999999
Q ss_pred ccccccccccCCceEEcccH------HHHHHHHHHHHHHH
Q 020346 275 CSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIR 308 (327)
Q Consensus 275 ~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~ 308 (327)
+++++++ +.+|+++++|+| .....+++.++++.
T Consensus 143 vaLARaL-~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~ 181 (353)
T TIGR03265 143 VALARAL-ATSPGLLLLDEPLSALDARVREHLRTEIRQLQ 181 (353)
T ss_pred HHHHHHH-hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH
Confidence 9999999 999999999965 34444555555553
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.9e-21 Score=187.39 Aligned_cols=151 Identities=18% Similarity=0.230 Sum_probs=109.7
Q ss_pred CCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccc
Q 020346 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (327)
Q Consensus 136 ~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~ 214 (327)
.++.+.++|++..+++++++.+ +|++++|+||||||||||+++|+| +++|++|+|+++|+++...+.
T Consensus 4 ~i~~l~~~~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaG------------l~~p~~G~I~i~g~~i~~~~~ 71 (353)
T PRK10851 4 EIANIKKSFGRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAG------------LEHQTSGHIRFHGTDVSRLHA 71 (353)
T ss_pred EEEEEEEEeCCeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhC------------CCCCCCcEEEECCEECCCCCH
Confidence 3567778887778999999998 999999999999999999999999 899999999999998865432
Q ss_pred cCCCcceeeEEEEEEEccCCC----eEEeCcccCCcc-------------------ccccCHhHHhhhhHHHHHhcCccc
Q 020346 215 KSGRGKHTTRHVSLLPLSGGG----YLADTPGFNQPS-------------------LLKVTKQSLAQTFPEIKEMLKANE 271 (327)
Q Consensus 215 ~~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~~-------------------l~~~~~~~l~~~~~~~~~~LSgGq 271 (327)
..+.++|++|++.. ++.++..+.... ++.+.+.++.+..+ ..|||||
T Consensus 72 -------~~r~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~---~~LSgGq 141 (353)
T PRK10851 72 -------RDRKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYP---AQLSGGQ 141 (353)
T ss_pred -------HHCCEEEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCCh---hhCCHHH
Confidence 23579999997532 333333322110 11111112222222 2399999
Q ss_pred cccccccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 272 PAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 272 ~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
+||+++++++ +.+|.++++|+| ...+.++++++++..
T Consensus 142 ~QRvalArAL-~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~ 184 (353)
T PRK10851 142 KQRVALARAL-AVEPQILLLDEPFGALDAQVRKELRRWLRQLHE 184 (353)
T ss_pred HHHHHHHHHH-hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHH
Confidence 9999999999 999999999965 344555566666644
|
|
| >cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.1e-21 Score=168.14 Aligned_cols=140 Identities=15% Similarity=0.220 Sum_probs=104.5
Q ss_pred CceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccccc
Q 020346 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (327)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~ 215 (327)
++.+.++|.+..+++++++.+ +|++++|+|+||+|||||+++|+| +++|++|+|.++|.++...+..
T Consensus 3 ~~~l~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G------------~~~~~~G~i~~~g~~~~~~~~~ 70 (178)
T cd03229 3 LKNVSKRYGQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAG------------LEEPDSGSILIDGEDLTDLEDE 70 (178)
T ss_pred EEEEEEEECCeEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhC------------CCCCCceEEEECCEEccccchh
Confidence 456677777777999999998 999999999999999999999999 8999999999999987654310
Q ss_pred CCCcceeeEEEEEEEccCCCeEEeCcccCCccccccCHhHHhhhhHHHHHhcCccccccccccccccccCCceEEcccH-
Q 020346 216 SGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDW- 294 (327)
Q Consensus 216 ~~~g~~tt~~i~~v~q~~~~~i~Dtpg~~~~~l~~~~~~~l~~~~~~~~~~LSgGq~q~~~~~~~~h~~ep~~~v~~~~- 294 (327)
.....+.+++++|.+..+ .. ....+++... ||+||+||+.+++++ +.+|.++++|+|
T Consensus 71 ---~~~~~~~i~~~~q~~~~~--~~----~t~~~~l~~~------------lS~G~~qr~~la~al-~~~p~llilDEP~ 128 (178)
T cd03229 71 ---LPPLRRRIGMVFQDFALF--PH----LTVLENIALG------------LSGGQQQRVALARAL-AMDPDVLLLDEPT 128 (178)
T ss_pred ---HHHHhhcEEEEecCCccC--CC----CCHHHheeec------------CCHHHHHHHHHHHHH-HCCCCEEEEeCCc
Confidence 011456789999853210 00 0111111110 999999999999999 999999999955
Q ss_pred -----HHHHHHHHHHHHHHHh
Q 020346 295 -----ERYQYYFQLLDEIRIR 310 (327)
Q Consensus 295 -----~r~~~~~~ll~e~~~~ 310 (327)
...+.+.+++.++...
T Consensus 129 ~~LD~~~~~~l~~~l~~~~~~ 149 (178)
T cd03229 129 SALDPITRREVRALLKSLQAQ 149 (178)
T ss_pred ccCCHHHHHHHHHHHHHHHHh
Confidence 4566666777776543
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.8e-21 Score=197.64 Aligned_cols=141 Identities=25% Similarity=0.289 Sum_probs=107.8
Q ss_pred cCCceeecc-CcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccc
Q 020346 135 WGYEPLFCS-VESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV 212 (327)
Q Consensus 135 ~~~~~~~~s-~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~ 212 (327)
+.++.++++ |.++.+++++++.+ +|++++|+|+||||||||+++|+| ++ |++|+|.+||.++.++
T Consensus 350 i~~~~vsf~~~~~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g------------~~-p~~G~I~i~g~~i~~~ 416 (588)
T PRK11174 350 IEAEDLEILSPDGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLG------------FL-PYQGSLKINGIELREL 416 (588)
T ss_pred EEEEeeEEeccCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhc------------CC-CCCcEEEECCEecccC
Confidence 567777654 45667999999998 999999999999999999999999 99 9999999999999988
Q ss_pred cccCCCcceeeEEEEEEEccC---CCeEEeCcccCCccccccCHh------HHhh---hhHH-----H---HHhcCcccc
Q 020346 213 STKSGRGKHTTRHVSLLPLSG---GGYLADTPGFNQPSLLKVTKQ------SLAQ---TFPE-----I---KEMLKANEP 272 (327)
Q Consensus 213 s~~~~~g~~tt~~i~~v~q~~---~~~i~Dtpg~~~~~l~~~~~~------~l~~---~~~~-----~---~~~LSgGq~ 272 (327)
+... .+++++++||++ ++++.|+..+..+....-+.. .+.+ .+|+ + -..|||||+
T Consensus 417 ~~~~-----lr~~i~~v~Q~~~LF~~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQr 491 (588)
T PRK11174 417 DPES-----WRKHLSWVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQA 491 (588)
T ss_pred CHHH-----HHhheEEecCCCcCCCcCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHH
Confidence 7654 788999999986 556667766653321111110 1111 1111 0 123999999
Q ss_pred ccccccccccccCCceEEcccH
Q 020346 273 AKCSFNNCLHLGEPGCVVKGDW 294 (327)
Q Consensus 273 q~~~~~~~~h~~ep~~~v~~~~ 294 (327)
||+++|+++ +.+|.++|+||+
T Consensus 492 QRialARAl-l~~~~IliLDE~ 512 (588)
T PRK11174 492 QRLALARAL-LQPCQLLLLDEP 512 (588)
T ss_pred HHHHHHHHH-hcCCCEEEEeCC
Confidence 999999999 999999999965
|
|
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.1e-21 Score=172.88 Aligned_cols=148 Identities=14% Similarity=0.160 Sum_probs=105.0
Q ss_pred ceeeccCcc-hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccccc
Q 020346 138 EPLFCSVES-KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (327)
Q Consensus 138 ~~~~~s~~~-~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~ 215 (327)
+.+.++|++ ..+++++++.+ +|++++|+||||||||||+++|+| +++|++|+|+++|.++...
T Consensus 3 ~~l~~~~~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G------------l~~p~~G~i~~~g~~~~~~--- 67 (205)
T cd03226 3 ENISFSYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAG------------LIKESSGSILLNGKPIKAK--- 67 (205)
T ss_pred ccEEEEeCCcCceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhc------------CCCCCceEEEECCEEhhhH---
Confidence 456677766 67899999998 999999999999999999999999 8899999999999887431
Q ss_pred CCCcceeeEEEEEEEccCCC-----eEEeCcccCCcc-----------ccccCHhHHhhhhHHHHHhcCccccccccccc
Q 020346 216 SGRGKHTTRHVSLLPLSGGG-----YLADTPGFNQPS-----------LLKVTKQSLAQTFPEIKEMLKANEPAKCSFNN 279 (327)
Q Consensus 216 ~~~g~~tt~~i~~v~q~~~~-----~i~Dtpg~~~~~-----------l~~~~~~~l~~~~~~~~~~LSgGq~q~~~~~~ 279 (327)
. ..++++|++|++.. ++.|+..+.... ++.+...+..+.. ...|||||+||+.+++
T Consensus 68 ~-----~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---~~~LS~G~~qrv~lar 139 (205)
T cd03226 68 E-----RRKSIGYVMQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKERH---PLSLSGGQKQRLAIAA 139 (205)
T ss_pred H-----hhcceEEEecChhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcCCC---chhCCHHHHHHHHHHH
Confidence 1 34578999997421 222222211000 0001111111112 2349999999999999
Q ss_pred cccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 280 CLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 280 ~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
++ +.+|.++++|+| ...+.+.++++++..
T Consensus 140 al-~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~ 174 (205)
T cd03226 140 AL-LSGKDLLIFDEPTSGLDYKNMERVGELIRELAA 174 (205)
T ss_pred HH-HhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHH
Confidence 99 999999999955 455566667776643
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.7e-21 Score=174.51 Aligned_cols=154 Identities=14% Similarity=0.189 Sum_probs=107.4
Q ss_pred CceeeccCcch----hhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecc
Q 020346 137 YEPLFCSVESK----LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (327)
Q Consensus 137 ~~~~~~s~~~~----~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~ 211 (327)
++.+.++|++. .+++++++.+ +|++++|+|+||||||||+++|+| +++|++|+|+++|.++..
T Consensus 4 ~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~G------------l~~~~~G~i~~~g~~~~~ 71 (218)
T cd03266 4 ADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAG------------LLEPDAGFATVDGFDVVK 71 (218)
T ss_pred EEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhC------------CcCCCCceEEECCEEccc
Confidence 46677788665 7999999998 899999999999999999999999 899999999999998764
Q ss_pred ccccCCCcceeeEEEEEEEccCCC----eEEeCcccCCc--ccc----------ccCHhHHhhhhHHHHHhcCccccccc
Q 020346 212 VSTKSGRGKHTTRHVSLLPLSGGG----YLADTPGFNQP--SLL----------KVTKQSLAQTFPEIKEMLKANEPAKC 275 (327)
Q Consensus 212 ~s~~~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~--~l~----------~~~~~~l~~~~~~~~~~LSgGq~q~~ 275 (327)
.+. ..++.++++||.+.. ++.|+..+... ... .++...+..........|||||+||+
T Consensus 72 ~~~------~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv 145 (218)
T cd03266 72 EPA------EARRRLGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKV 145 (218)
T ss_pred CHH------HHHhhEEEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHH
Confidence 221 145679999997522 22222211100 000 00000111111222344999999999
Q ss_pred cccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 276 SFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 276 ~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
++++++ +.+|.++|+|+| ...+.+.++++++..
T Consensus 146 ~laral-~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~ 184 (218)
T cd03266 146 AIARAL-VHDPPVLLLDEPTTGLDVMATRALREFIRQLRA 184 (218)
T ss_pred HHHHHH-hcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHH
Confidence 999999 999999999965 455666667776643
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.3e-21 Score=203.53 Aligned_cols=143 Identities=15% Similarity=0.233 Sum_probs=110.2
Q ss_pred cCCceeeccCcc--hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecc
Q 020346 135 WGYEPLFCSVES--KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (327)
Q Consensus 135 ~~~~~~~~s~~~--~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~ 211 (327)
+.++.++++|.. +.+++++++.+ +|++++|+|+||||||||+++|+| +++|++|+|.+||.++.+
T Consensus 478 I~~~~vsf~y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~g------------l~~p~~G~I~idg~~i~~ 545 (710)
T TIGR03796 478 VELRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAG------------LYQPWSGEILFDGIPREE 545 (710)
T ss_pred EEEEEEEEecCCCCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhc------------CCCCCCcEEEECCEeHHH
Confidence 567889999964 57999999998 999999999999999999999999 999999999999999998
Q ss_pred ccccCCCcceeeEEEEEEEccC---CCeEEeCcccCCccccccCH---------hHHhhhhHH--------HHHhcCccc
Q 020346 212 VSTKSGRGKHTTRHVSLLPLSG---GGYLADTPGFNQPSLLKVTK---------QSLAQTFPE--------IKEMLKANE 271 (327)
Q Consensus 212 ~s~~~~~g~~tt~~i~~v~q~~---~~~i~Dtpg~~~~~l~~~~~---------~~l~~~~~~--------~~~~LSgGq 271 (327)
++... .++.++++||++ ++++.|+..+..+....-+. .+.-..+|+ --..|||||
T Consensus 546 ~~~~~-----lr~~i~~v~Q~~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQ 620 (710)
T TIGR03796 546 IPREV-----LANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQ 620 (710)
T ss_pred CCHHH-----HHhheeEEecCChhhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHH
Confidence 87654 788999999986 44566665544322111000 010111110 012399999
Q ss_pred cccccccccccccCCceEEcccHH
Q 020346 272 PAKCSFNNCLHLGEPGCVVKGDWE 295 (327)
Q Consensus 272 ~q~~~~~~~~h~~ep~~~v~~~~~ 295 (327)
+||+++++++ +.+|.++++||+.
T Consensus 621 rQRiaLARal-l~~p~iliLDEpt 643 (710)
T TIGR03796 621 RQRLEIARAL-VRNPSILILDEAT 643 (710)
T ss_pred HHHHHHHHHH-hhCCCEEEEECcc
Confidence 9999999999 9999999999663
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=99.82 E-value=6.1e-21 Score=171.65 Aligned_cols=152 Identities=17% Similarity=0.260 Sum_probs=105.9
Q ss_pred CceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccccc
Q 020346 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (327)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~ 215 (327)
++.+.++|.+..+++++++.+ +|++++|+|+||||||||+++|+| +++|++|+|+++|.++...+.
T Consensus 3 ~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G------------~~~~~~G~v~~~g~~~~~~~~- 69 (213)
T cd03301 3 LENVTKRFGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAG------------LEEPTSGRIYIGGRDVTDLPP- 69 (213)
T ss_pred EEeeEEEECCeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhC------------CCCCCceEEEECCEECCcCCc-
Confidence 456777887778999999998 999999999999999999999999 889999999999998754432
Q ss_pred CCCcceeeEEEEEEEccCCC----eEEeCcccCCccccccCHh-------H------HhhhhHHHHHhcCcccccccccc
Q 020346 216 SGRGKHTTRHVSLLPLSGGG----YLADTPGFNQPSLLKVTKQ-------S------LAQTFPEIKEMLKANEPAKCSFN 278 (327)
Q Consensus 216 ~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~~l~~~~~~-------~------l~~~~~~~~~~LSgGq~q~~~~~ 278 (327)
..+.+++++|.+.. ++.|+..+... ....... + +..........||+||+||+.++
T Consensus 70 ------~~~~i~~~~q~~~~~~~~tv~~~l~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la 142 (213)
T cd03301 70 ------KDRDIAMVFQNYALYPHMTVYDNIAFGLK-LRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALG 142 (213)
T ss_pred ------ccceEEEEecChhhccCCCHHHHHHHHHH-hcCCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHH
Confidence 23579999987522 22222211100 0000000 0 00111111234999999999999
Q ss_pred ccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 279 NCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 279 ~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
+++ +.+|+++++|+| .......++++++..
T Consensus 143 ral-~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~ 178 (213)
T cd03301 143 RAI-VREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQ 178 (213)
T ss_pred HHH-hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH
Confidence 999 999999999965 455555566666644
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.4e-21 Score=165.96 Aligned_cols=121 Identities=16% Similarity=0.278 Sum_probs=99.9
Q ss_pred CceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccccc
Q 020346 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (327)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~ 215 (327)
++.+.++|.+..+++++++.+ +|++++|+|+||+|||||+++|+| +++|++|+|+++|.++...+..
T Consensus 3 ~~~l~~~~~~~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G------------~~~~~~G~v~~~g~~~~~~~~~ 70 (163)
T cd03216 3 LRGITKRFGGVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSG------------LYKPDSGEILVDGKEVSFASPR 70 (163)
T ss_pred EEEEEEEECCeEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhC------------CCCCCCeEEEECCEECCcCCHH
Confidence 466778887778999999998 999999999999999999999999 8999999999999987654321
Q ss_pred CCCcceeeEEEEEEEccCCCeEEeCcccCCccccccCHhHHhhhhHHHHHhcCccccccccccccccccCCceEEcccH-
Q 020346 216 SGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDW- 294 (327)
Q Consensus 216 ~~~g~~tt~~i~~v~q~~~~~i~Dtpg~~~~~l~~~~~~~l~~~~~~~~~~LSgGq~q~~~~~~~~h~~ep~~~v~~~~- 294 (327)
. ..++.+++++| ||+||+||+.+++++ +.+|.++++|+|
T Consensus 71 ~----~~~~~i~~~~q-----------------------------------LS~G~~qrl~laral-~~~p~illlDEP~ 110 (163)
T cd03216 71 D----ARRAGIAMVYQ-----------------------------------LSVGERQMVEIARAL-ARNARLLILDEPT 110 (163)
T ss_pred H----HHhcCeEEEEe-----------------------------------cCHHHHHHHHHHHHH-hcCCCEEEEECCC
Confidence 1 13456778776 999999999999999 999999999965
Q ss_pred -----HHHHHHHHHHHHHHH
Q 020346 295 -----ERYQYYFQLLDEIRI 309 (327)
Q Consensus 295 -----~r~~~~~~ll~e~~~ 309 (327)
...+...++++++..
T Consensus 111 ~~LD~~~~~~l~~~l~~~~~ 130 (163)
T cd03216 111 AALTPAEVERLFKVIRRLRA 130 (163)
T ss_pred cCCCHHHHHHHHHHHHHHHH
Confidence 455566666666643
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.7e-21 Score=175.84 Aligned_cols=155 Identities=19% Similarity=0.272 Sum_probs=105.4
Q ss_pred CceeeccCcc--hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccc
Q 020346 137 YEPLFCSVES--KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (327)
Q Consensus 137 ~~~~~~s~~~--~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s 213 (327)
++.+.++|.+ ..+++++++.+ +|++++|+|+||||||||+++|+| +++|++|+|.++|.++...+
T Consensus 4 ~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G------------l~~~~~G~i~~~g~~~~~~~ 71 (216)
T TIGR00960 4 FEQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILG------------IEKPTRGKIRFNGQDLTRLR 71 (216)
T ss_pred EEEEEEEecCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhC------------CCCCCceEEEECCEehhhcC
Confidence 4567777754 35899999998 999999999999999999999999 89999999999999876543
Q ss_pred ccCCCcceeeEEEEEEEccCCC----eEEeCcccCCc--c-------------ccccCHhHHhhhhHHHHHhcCcccccc
Q 020346 214 TKSGRGKHTTRHVSLLPLSGGG----YLADTPGFNQP--S-------------LLKVTKQSLAQTFPEIKEMLKANEPAK 274 (327)
Q Consensus 214 ~~~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~--~-------------l~~~~~~~l~~~~~~~~~~LSgGq~q~ 274 (327)
... ....++.++|++|++.. ++.|+..+... . ++.+......+.. ...|||||+||
T Consensus 72 ~~~--~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---~~~LSgG~~qr 146 (216)
T TIGR00960 72 GRE--IPFLRRHIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHAL---PMQLSGGEQQR 146 (216)
T ss_pred hhH--HHHHHHhceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCC---hhhCCHHHHHH
Confidence 211 00134578999997532 22222211100 0 0001111111111 23499999999
Q ss_pred ccccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 275 CSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 275 ~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
+++++++ +.+|+++++|+| ...+.+.+++.++..
T Consensus 147 v~laral-~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~ 186 (216)
T TIGR00960 147 VAIARAI-VHKPPLLLADEPTGNLDPELSRDIMRLFEEFNR 186 (216)
T ss_pred HHHHHHH-hcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH
Confidence 9999999 999999999965 344555556666543
|
|
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=99.82 E-value=3e-21 Score=175.82 Aligned_cols=155 Identities=12% Similarity=0.147 Sum_probs=107.3
Q ss_pred CceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccccc
Q 020346 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (327)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~ 215 (327)
++.+.++|.++.+++++++.+ +|++++|+|+||||||||+++|+| +++|++|+|+++|.++...+..
T Consensus 3 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G------------l~~p~~G~i~~~g~~~~~~~~~ 70 (232)
T cd03218 3 AENLSKRYGKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVG------------LVKPDSGKILLDGQDITKLPMH 70 (232)
T ss_pred EEEEEEEeCCEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhC------------CCCCCCcEEEECCEecccCCHh
Confidence 456778887778999999998 999999999999999999999999 8899999999999987654322
Q ss_pred CCCcceeeEEEEEEEccCCC----eEEeCcccCCccccccCH-------hH------HhhhhHHHHHhcCcccccccccc
Q 020346 216 SGRGKHTTRHVSLLPLSGGG----YLADTPGFNQPSLLKVTK-------QS------LAQTFPEIKEMLKANEPAKCSFN 278 (327)
Q Consensus 216 ~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~~l~~~~~-------~~------l~~~~~~~~~~LSgGq~q~~~~~ 278 (327)
.. ....+++++|.+.. ++.|+..+.... ..... .+ +..........||+||+||+.++
T Consensus 71 ~~----~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la 145 (232)
T cd03218 71 KR----ARLGIGYLPQEASIFRKLTVEENILAVLEI-RGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIA 145 (232)
T ss_pred HH----HhccEEEecCCccccccCcHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHH
Confidence 11 23468999987532 222222111000 00000 00 11111111234999999999999
Q ss_pred ccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 279 NCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 279 ~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
+++ +.+|.++++|+| ...+.+.++++++..
T Consensus 146 ~al-~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~ 181 (232)
T cd03218 146 RAL-ATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKD 181 (232)
T ss_pred HHH-hcCCCEEEecCCcccCCHHHHHHHHHHHHHHHH
Confidence 999 999999999965 455566667766654
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >cd01858 NGP_1 NGP-1 | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.8e-19 Score=153.79 Aligned_cols=142 Identities=27% Similarity=0.375 Sum_probs=103.2
Q ss_pred cccccccEEEEEeecCCCCCC-hHHHHHHHHHHHhcCCCEEEEeecCCCCcHHHHHHHHhhhhhc-CCceeeccCcchhh
Q 020346 72 PPVANVDHLLLLFSMDQPKLE-PFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW-GYEPLFCSVESKLG 149 (327)
Q Consensus 72 ~~~anvD~lliv~~~~~p~~~-~~~l~r~L~~a~~~~~~~~ivlnK~Dl~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~ 149 (327)
..++++|++++|.++..|..+ ...+.+++.. ...++|+++|+||+|+.+++....|...+.+. .+..+.+|.....+
T Consensus 4 ~~l~~aD~il~VvD~~~p~~~~~~~i~~~l~~-~~~~~p~ilVlNKiDl~~~~~~~~~~~~~~~~~~~~~~~iSa~~~~~ 82 (157)
T cd01858 4 KVIDSSDVVIQVLDARDPMGTRCKHVEEYLKK-EKPHKHLIFVLNKCDLVPTWVTARWVKILSKEYPTIAFHASINNPFG 82 (157)
T ss_pred HhhhhCCEEEEEEECCCCccccCHHHHHHHHh-ccCCCCEEEEEEchhcCCHHHHHHHHHHHhcCCcEEEEEeecccccc
Confidence 357899999999999887443 5678888864 34468999999999998877666677766553 23346667665555
Q ss_pred HHHHHhhc----------CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCc
Q 020346 150 LDSLLQRL----------RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRG 219 (327)
Q Consensus 150 l~~l~~~l----------~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g 219 (327)
++.+...+ .+..++++|+||+|||||+|+|.+... ..++.. +|
T Consensus 83 ~~~L~~~l~~~~~~~~~~~~~~v~~~G~~nvGKStliN~l~~~~~----------------------~~~~~~---~g-- 135 (157)
T cd01858 83 KGSLIQLLRQFSKLHSDKKQISVGFIGYPNVGKSSIINTLRSKKV----------------------CKVAPI---PG-- 135 (157)
T ss_pred HHHHHHHHHHHHhhhccccceEEEEEeCCCCChHHHHHHHhcCCc----------------------eeeCCC---CC--
Confidence 55443332 245678999999999999999999431 122222 33
Q ss_pred ceeeEEEEEEEccCCCeEEeCccc
Q 020346 220 KHTTRHVSLLPLSGGGYLADTPGF 243 (327)
Q Consensus 220 ~~tt~~i~~v~q~~~~~i~Dtpg~ 243 (327)
+|++..+++...+.+++||||+
T Consensus 136 --~T~~~~~~~~~~~~~liDtPGi 157 (157)
T cd01858 136 --ETKVWQYITLMKRIYLIDCPGV 157 (157)
T ss_pred --eeEeEEEEEcCCCEEEEECcCC
Confidence 7888899998777899999995
|
Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus. |
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.9e-21 Score=175.07 Aligned_cols=154 Identities=15% Similarity=0.184 Sum_probs=107.7
Q ss_pred CCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccc
Q 020346 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (327)
Q Consensus 136 ~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~ 214 (327)
.++.+.++|++..+++++++.+ +|++++|+|+||||||||+++|+| +++|++|+|+++|.++...+.
T Consensus 4 ~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G------------l~~~~~G~i~~~g~~~~~~~~ 71 (239)
T cd03296 4 EVRNVSKRFGDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAG------------LERPDSGTILFGGEDATDVPV 71 (239)
T ss_pred EEEeEEEEECCEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhC------------CCCCCceEEEECCEECCcCCc
Confidence 3567788887778999999998 999999999999999999999999 889999999999998754331
Q ss_pred cCCCcceeeEEEEEEEccCCC----eEEeCcccCCccccc---cCH-------hH------HhhhhHHHHHhcCcccccc
Q 020346 215 KSGRGKHTTRHVSLLPLSGGG----YLADTPGFNQPSLLK---VTK-------QS------LAQTFPEIKEMLKANEPAK 274 (327)
Q Consensus 215 ~~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~~l~~---~~~-------~~------l~~~~~~~~~~LSgGq~q~ 274 (327)
..+.++|++|.+.. ++.|+..+....... ... .+ +..........||+||+||
T Consensus 72 -------~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr 144 (239)
T cd03296 72 -------QERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQR 144 (239)
T ss_pred -------cccceEEEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHH
Confidence 23568999997532 222322221000000 000 00 1001111123499999999
Q ss_pred ccccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 275 CSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 275 ~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
+.+++++ +.+|.++++|+| ...+.+.+++.++..
T Consensus 145 l~la~al-~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~ 184 (239)
T cd03296 145 VALARAL-AVEPKVLLLDEPFGALDAKVRKELRRWLRRLHD 184 (239)
T ss_pred HHHHHHH-hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH
Confidence 9999999 899999999965 455556667766654
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.7e-21 Score=174.11 Aligned_cols=158 Identities=13% Similarity=0.200 Sum_probs=106.6
Q ss_pred CceeeccC-cchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccc
Q 020346 137 YEPLFCSV-ESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (327)
Q Consensus 137 ~~~~~~s~-~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~ 214 (327)
++.+.++| .+..+++++++.+ +|++++|+|+||||||||+++|+| +++|++|+|+++|.++...+.
T Consensus 4 ~~~l~~~~~~~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~G------------l~~~~~G~i~~~g~~~~~~~~ 71 (214)
T TIGR02673 4 FHNVSKAYPGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYG------------ALTPSRGQVRIAGEDVNRLRG 71 (214)
T ss_pred EEeeeEEeCCCceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhC------------CCCCCCceEEECCEEcccCCH
Confidence 45667777 4567899999998 999999999999999999999999 889999999999998865432
Q ss_pred cCCCcceeeEEEEEEEccCCC----eEEeCcccCCc--ccc--cc--CHh------HHhhhhHHHHHhcCcccccccccc
Q 020346 215 KSGRGKHTTRHVSLLPLSGGG----YLADTPGFNQP--SLL--KV--TKQ------SLAQTFPEIKEMLKANEPAKCSFN 278 (327)
Q Consensus 215 ~~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~--~l~--~~--~~~------~l~~~~~~~~~~LSgGq~q~~~~~ 278 (327)
.. .....+.+++++|.+.. ++.|+..+... ... .. ... .+..........|||||+||+.++
T Consensus 72 ~~--~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la 149 (214)
T TIGR02673 72 RQ--LPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIA 149 (214)
T ss_pred HH--HHHHHhheEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHH
Confidence 11 01134678999987532 22222211100 000 00 000 011111111234999999999999
Q ss_pred ccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 279 NCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 279 ~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
+++ +.+|.++++|+| .....+.++++++..
T Consensus 150 ~al-~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~ 185 (214)
T TIGR02673 150 RAI-VNSPPLLLADEPTGNLDPDLSERILDLLKRLNK 185 (214)
T ss_pred HHH-hCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence 999 899999999965 455566666666644
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=99.82 E-value=6.1e-21 Score=171.50 Aligned_cols=157 Identities=14% Similarity=0.162 Sum_probs=107.4
Q ss_pred CceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccccc
Q 020346 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (327)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~ 215 (327)
++.+.++|++..+++++++.+ +|++++|+|+||||||||+++|+| +++|++|+|+++|.++.....
T Consensus 3 ~~~l~~~~~~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G------------~~~~~~G~i~~~g~~~~~~~~- 69 (213)
T cd03262 3 IKNLHKSFGDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINL------------LEEPDSGTIIIDGLKLTDDKK- 69 (213)
T ss_pred EEEEEEEECCeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhC------------CCCCCCceEEECCEECCccch-
Confidence 456777887778999999998 999999999999999999999999 889999999999987742110
Q ss_pred CCCcceeeEEEEEEEccCCC----eEEeCcccCCccccccCHh----HHhhh---------hHHHHHhcCcccccccccc
Q 020346 216 SGRGKHTTRHVSLLPLSGGG----YLADTPGFNQPSLLKVTKQ----SLAQT---------FPEIKEMLKANEPAKCSFN 278 (327)
Q Consensus 216 ~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~~l~~~~~~----~l~~~---------~~~~~~~LSgGq~q~~~~~ 278 (327)
......+.++|++|++.. .+.|+..+........... ..... .......||+||+||++++
T Consensus 70 --~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la 147 (213)
T cd03262 70 --NINELRQKVGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIA 147 (213)
T ss_pred --hHHHHHhcceEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHH
Confidence 001145679999997532 2223222210000000000 00000 0111234999999999999
Q ss_pred ccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 279 NCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 279 ~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
+++ +.+|.++++|+| ...+.+.+++.++..
T Consensus 148 ~al-~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~ 183 (213)
T cd03262 148 RAL-AMNPKVMLFDEPTSALDPELVGEVLDVMKDLAE 183 (213)
T ss_pred HHH-hcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHH
Confidence 999 999999999965 455666677777654
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.7e-21 Score=187.72 Aligned_cols=152 Identities=16% Similarity=0.194 Sum_probs=109.0
Q ss_pred cCCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccc
Q 020346 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (327)
Q Consensus 135 ~~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s 213 (327)
+.++.+.++|++..+++++++.+ +|++++|+||||||||||+++|+| +++|++|+|+++|.++...+
T Consensus 4 l~i~~l~~~~~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaG------------l~~p~~G~I~~~g~~i~~~~ 71 (369)
T PRK11000 4 VTLRNVTKAYGDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAG------------LEDITSGDLFIGEKRMNDVP 71 (369)
T ss_pred EEEEEEEEEeCCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhC------------CCCCCceEEEECCEECCCCC
Confidence 34567888888778999999998 899999999999999999999999 89999999999999886543
Q ss_pred ccCCCcceeeEEEEEEEccCC----CeEEeCcccCCc--c-------------ccccCHhHHhhhhHHHHHhcCcccccc
Q 020346 214 TKSGRGKHTTRHVSLLPLSGG----GYLADTPGFNQP--S-------------LLKVTKQSLAQTFPEIKEMLKANEPAK 274 (327)
Q Consensus 214 ~~~~~g~~tt~~i~~v~q~~~----~~i~Dtpg~~~~--~-------------l~~~~~~~l~~~~~~~~~~LSgGq~q~ 274 (327)
. ..+.++|++|++. .++.|+..+... . ++.+.+....+..+ ..|||||+||
T Consensus 72 ~-------~~~~i~~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~---~~LSgGq~QR 141 (369)
T PRK11000 72 P-------AERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKP---KALSGGQRQR 141 (369)
T ss_pred H-------hHCCEEEEeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCCh---hhCCHHHHHH
Confidence 2 2356999999753 233343332110 0 01111111112222 3499999999
Q ss_pred ccccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 275 CSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 275 ~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
+++++++ +.+|+++|+|+| .-.+.++++++++..
T Consensus 142 vaLAraL-~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~ 181 (369)
T PRK11000 142 VAIGRTL-VAEPSVFLLDEPLSNLDAALRVQMRIEISRLHK 181 (369)
T ss_pred HHHHHHH-hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence 9999999 999999999965 344445555555543
|
|
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.6e-21 Score=199.92 Aligned_cols=142 Identities=19% Similarity=0.285 Sum_probs=110.4
Q ss_pred hcCCceeeccCc--chhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeec
Q 020346 134 TWGYEPLFCSVE--SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (327)
Q Consensus 134 ~~~~~~~~~s~~--~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~ 210 (327)
.+.++.+.++|. ++.+++++++.+ +|++++|+|+||||||||+|+|+| +++|++|+|.+||.++.
T Consensus 451 ~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~g------------l~~p~~G~I~idg~~i~ 518 (686)
T TIGR03797 451 AIEVDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLG------------FETPESGSVFYDGQDLA 518 (686)
T ss_pred eEEEEEEEEEcCCCCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhC------------CCCCCCCEEEECCEEcC
Confidence 366788999995 357999999998 999999999999999999999999 99999999999999999
Q ss_pred cccccCCCcceeeEEEEEEEccC---CCeEEeCcccCCcccccc---------CHhHHhhhhHH--------HHHhcCcc
Q 020346 211 EVSTKSGRGKHTTRHVSLLPLSG---GGYLADTPGFNQPSLLKV---------TKQSLAQTFPE--------IKEMLKAN 270 (327)
Q Consensus 211 ~~s~~~~~g~~tt~~i~~v~q~~---~~~i~Dtpg~~~~~l~~~---------~~~~l~~~~~~--------~~~~LSgG 270 (327)
+++... .+++++++||++ ++++.|+..+..+ ...- ...+.-...|+ --..||||
T Consensus 519 ~~~~~~-----lr~~i~~v~Q~~~lf~gTI~eNi~~~~~-~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGG 592 (686)
T TIGR03797 519 GLDVQA-----VRRQLGVVLQNGRLMSGSIFENIAGGAP-LTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGG 592 (686)
T ss_pred cCCHHH-----HHhccEEEccCCccCcccHHHHHhcCCC-CCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHH
Confidence 887654 788999999985 4456666555433 1110 00111111111 01239999
Q ss_pred ccccccccccccccCCceEEcccH
Q 020346 271 EPAKCSFNNCLHLGEPGCVVKGDW 294 (327)
Q Consensus 271 q~q~~~~~~~~h~~ep~~~v~~~~ 294 (327)
|+||+++++++ +.+|.++++||+
T Consensus 593 QrQRialARAl-l~~p~iLiLDEp 615 (686)
T TIGR03797 593 QRQRLLIARAL-VRKPRILLFDEA 615 (686)
T ss_pred HHHHHHHHHHH-hcCCCEEEEeCC
Confidence 99999999999 999999999965
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.2e-21 Score=173.33 Aligned_cols=158 Identities=19% Similarity=0.250 Sum_probs=107.0
Q ss_pred CceeeccCcc----hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecc
Q 020346 137 YEPLFCSVES----KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (327)
Q Consensus 137 ~~~~~~s~~~----~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~ 211 (327)
++.+.++|++ ..+++++++.+ +|++++|+|+||||||||+++|+| +++|++|+|.++|.++..
T Consensus 3 ~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~G------------l~~~~~G~i~~~g~~~~~ 70 (218)
T cd03255 3 LKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGG------------LDRPTSGEVRVDGTDISK 70 (218)
T ss_pred EeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhC------------CcCCCceeEEECCEehhh
Confidence 4567777865 57899999998 999999999999999999999999 899999999999998765
Q ss_pred ccccCCCcceeeEEEEEEEccCCC----eEEeCcccCCccccccC----HhHHh---------hhhHHHHHhcCcccccc
Q 020346 212 VSTKSGRGKHTTRHVSLLPLSGGG----YLADTPGFNQPSLLKVT----KQSLA---------QTFPEIKEMLKANEPAK 274 (327)
Q Consensus 212 ~s~~~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~~l~~~~----~~~l~---------~~~~~~~~~LSgGq~q~ 274 (327)
.+.... .....+.+++++|.+.. ++.|+..+... ..... ...+. .........|||||+||
T Consensus 71 ~~~~~~-~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr 148 (218)
T cd03255 71 LSEKEL-AAFRRRHIGFVFQSFNLLPDLTALENVELPLL-LAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQR 148 (218)
T ss_pred cchhHH-HHHHhhcEEEEeeccccCCCCcHHHHHHHHHh-hcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHH
Confidence 432100 00023578999987422 22222221100 00000 00011 11111123499999999
Q ss_pred ccccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 275 CSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 275 ~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
+.+++++ +.+|.++++|+| ...+.+.++++++..
T Consensus 149 v~la~al-~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~ 188 (218)
T cd03255 149 VAIARAL-ANDPKIILADEPTGNLDSETGKEVMELLRELNK 188 (218)
T ss_pred HHHHHHH-ccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH
Confidence 9999999 999999999965 455666667766644
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.5e-21 Score=184.56 Aligned_cols=156 Identities=13% Similarity=0.133 Sum_probs=111.7
Q ss_pred cCCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccc
Q 020346 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (327)
Q Consensus 135 ~~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s 213 (327)
+.++.+.++|++..+++++++.+ +|++++|+||||||||||+++|+| +++|++|+|.++|.++....
T Consensus 42 i~i~nl~k~y~~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~G------------l~~p~~G~i~i~G~~~~~~~ 109 (340)
T PRK13536 42 IDLAGVSKSYGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILG------------MTSPDAGKITVLGVPVPARA 109 (340)
T ss_pred EEEEEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHc------------CCCCCceEEEECCEECCcch
Confidence 45677888998888999999998 899999999999999999999999 99999999999999876432
Q ss_pred ccCCCcceeeEEEEEEEccCCC----eEEeCcccCCccccccCHh-------HHh------hhhHHHHHhcCcccccccc
Q 020346 214 TKSGRGKHTTRHVSLLPLSGGG----YLADTPGFNQPSLLKVTKQ-------SLA------QTFPEIKEMLKANEPAKCS 276 (327)
Q Consensus 214 ~~~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~~l~~~~~~-------~l~------~~~~~~~~~LSgGq~q~~~ 276 (327)
.. .++.++++||.... ++.|+..+... +...... ++. .........||+||+||+.
T Consensus 110 ~~------~~~~ig~v~q~~~~~~~~tv~e~l~~~~~-~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~ 182 (340)
T PRK13536 110 RL------ARARIGVVPQFDNLDLEFTVRENLLVFGR-YFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLT 182 (340)
T ss_pred HH------HhccEEEEeCCccCCCCCcHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHH
Confidence 11 46679999997532 22232221100 0000000 011 1111112349999999999
Q ss_pred ccccccccCCceEEccc------HHHHHHHHHHHHHHHHh
Q 020346 277 FNNCLHLGEPGCVVKGD------WERYQYYFQLLDEIRIR 310 (327)
Q Consensus 277 ~~~~~h~~ep~~~v~~~------~~r~~~~~~ll~e~~~~ 310 (327)
++.++ +++|.++++|+ +.....+.+++.++...
T Consensus 183 lA~aL-~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~ 221 (340)
T PRK13536 183 LARAL-INDPQLLILDEPTTGLDPHARHLIWERLRSLLAR 221 (340)
T ss_pred HHHHH-hcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC
Confidence 99999 99999999995 45566666777777543
|
|
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=7.7e-22 Score=174.21 Aligned_cols=158 Identities=14% Similarity=0.175 Sum_probs=119.7
Q ss_pred CceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccccc
Q 020346 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (327)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~ 215 (327)
.+.+..+|+++.+++++++.+ +|++++++|||||||||.++++.| +.+|++|+|++++.+++..+..
T Consensus 7 a~~l~K~y~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~G------------lv~~d~G~i~ld~~diT~lPm~ 74 (243)
T COG1137 7 AENLAKSYKKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVG------------LVRPDSGKILLDDEDITKLPMH 74 (243)
T ss_pred ehhhhHhhCCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEE------------EEecCCceEEECCcccccCChH
Confidence 356778899999999999998 999999999999999999999999 9999999999999999999876
Q ss_pred CCCcceeeEEEEEEEccC----CCeEEeCcccCCcccc-c----cCHhHHhhhhHHH---------HHhcCccccccccc
Q 020346 216 SGRGKHTTRHVSLLPLSG----GGYLADTPGFNQPSLL-K----VTKQSLAQTFPEI---------KEMLKANEPAKCSF 277 (327)
Q Consensus 216 ~~~g~~tt~~i~~v~q~~----~~~i~Dtpg~~~~~l~-~----~~~~~l~~~~~~~---------~~~LSgGq~q~~~~ 277 (327)
.. .+..++|+||+. +.++.|+......... + ....++.....++ ...|||||++||.+
T Consensus 75 ~R----ArlGigYLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EI 150 (243)
T COG1137 75 KR----ARLGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEI 150 (243)
T ss_pred HH----hhcCcccccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHH
Confidence 54 678899999975 2344444321111100 0 0011122222222 12399999999999
Q ss_pred cccccccCCceEEccc------HHHHHHHHHHHHHHHHhH
Q 020346 278 NNCLHLGEPGCVVKGD------WERYQYYFQLLDEIRIRE 311 (327)
Q Consensus 278 ~~~~h~~ep~~~v~~~------~~r~~~~~~ll~e~~~~~ 311 (327)
|+++ ..+|..+++|+ |--....+++++.+++++
T Consensus 151 ARaL-a~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rg 189 (243)
T COG1137 151 ARAL-AANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRG 189 (243)
T ss_pred HHHH-hcCCCEEEecCCccCCCchhHHHHHHHHHHHHhCC
Confidence 9999 88999999995 447777788888887653
|
|
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.5e-20 Score=168.93 Aligned_cols=153 Identities=18% Similarity=0.296 Sum_probs=104.8
Q ss_pred ceeeccCcc--hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccc
Q 020346 138 EPLFCSVES--KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (327)
Q Consensus 138 ~~~~~s~~~--~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~ 214 (327)
+.+.++|.+ ..+++++++.+ +|++++|+|+||||||||+++|+| +++|++|+|.++|.++...+.
T Consensus 3 ~~l~~~~~~~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G------------~~~~~~G~i~~~g~~~~~~~~ 70 (211)
T cd03225 3 KNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNG------------LLGPTSGEVLVDGKDLTKLSL 70 (211)
T ss_pred eeEEEecCCCCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhc------------CCCCCCceEEECCEEcccCCH
Confidence 456677766 67899999998 999999999999999999999999 889999999999988765432
Q ss_pred cCCCcceeeEEEEEEEccCCC-----eEEeCcccCCccccccCH-------hHHhh------hhHHHHHhcCcccccccc
Q 020346 215 KSGRGKHTTRHVSLLPLSGGG-----YLADTPGFNQPSLLKVTK-------QSLAQ------TFPEIKEMLKANEPAKCS 276 (327)
Q Consensus 215 ~~~~g~~tt~~i~~v~q~~~~-----~i~Dtpg~~~~~l~~~~~-------~~l~~------~~~~~~~~LSgGq~q~~~ 276 (327)
.. .++.++|+||.+.. ++.|+..+.... ..... .++.+ ........|||||+||+.
T Consensus 71 ~~-----~~~~i~~~~q~~~~~~~~~t~~~~l~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ 144 (211)
T cd03225 71 KE-----LRRKVGLVFQNPDDQFFGPTVEEEVAFGLEN-LGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVA 144 (211)
T ss_pred HH-----HHhhceEEecChhhhcCCCcHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHH
Confidence 11 45678999997421 122221110000 00000 00110 001112349999999999
Q ss_pred ccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 277 FNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 277 ~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
+++++ +.+|.++|+|+| ...+...+++.++..
T Consensus 145 laral-~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~ 182 (211)
T cd03225 145 IAGVL-AMDPDILLLDEPTAGLDPAGRRELLELLKKLKA 182 (211)
T ss_pred HHHHH-hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH
Confidence 99999 999999999965 355555666666644
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=99.81 E-value=7.3e-21 Score=180.81 Aligned_cols=154 Identities=13% Similarity=0.159 Sum_probs=108.2
Q ss_pred CCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccc
Q 020346 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (327)
Q Consensus 136 ~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~ 214 (327)
.++.+.++|++..+++++++.+ +|++++|+||||||||||+++|+| +++|++|+|+++|.++.....
T Consensus 6 ~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~G------------l~~p~~G~i~~~g~~~~~~~~ 73 (303)
T TIGR01288 6 DLVGVSKSYGDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLG------------MISPDRGKITVLGEPVPSRAR 73 (303)
T ss_pred EEEeEEEEeCCeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhC------------CCCCCceEEEECCEECcccHH
Confidence 4567788888778999999998 999999999999999999999999 889999999999988753221
Q ss_pred cCCCcceeeEEEEEEEccCCC----eEEeCcccCCccccccCHh-------------HHhhhhHHHHHhcCccccccccc
Q 020346 215 KSGRGKHTTRHVSLLPLSGGG----YLADTPGFNQPSLLKVTKQ-------------SLAQTFPEIKEMLKANEPAKCSF 277 (327)
Q Consensus 215 ~~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~~l~~~~~~-------------~l~~~~~~~~~~LSgGq~q~~~~ 277 (327)
..++.++|+||.+.. ++.|+..+... ....... .+..........|||||+||+.+
T Consensus 74 ------~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~-~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~l 146 (303)
T TIGR01288 74 ------LARVAIGVVPQFDNLDPEFTVRENLLVFGR-YFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTL 146 (303)
T ss_pred ------HHhhcEEEEeccccCCcCCcHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHH
Confidence 145679999997532 22222211000 0000000 01011111123499999999999
Q ss_pred cccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 278 NNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 278 ~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
++++ +.+|.++++|+| ...+.+.++++++..
T Consensus 147 a~al-~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~ 183 (303)
T TIGR01288 147 ARAL-INDPQLLILDEPTTGLDPHARHLIWERLRSLLA 183 (303)
T ss_pred HHHH-hcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh
Confidence 9999 999999999955 455566666666644
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.1e-21 Score=173.00 Aligned_cols=153 Identities=17% Similarity=0.243 Sum_probs=105.2
Q ss_pred CceeeccCcc--hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccc
Q 020346 137 YEPLFCSVES--KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (327)
Q Consensus 137 ~~~~~~s~~~--~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s 213 (327)
++.+.++|.+ ..+++++++.+ +|++++|+|+||||||||+++|+| +++|++|+|+++|.++....
T Consensus 3 ~~~l~~~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G------------l~~~~~G~i~~~g~~~~~~~ 70 (220)
T cd03263 3 IRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTG------------ELRPTSGTAYINGYSIRTDR 70 (220)
T ss_pred EEeeEEEeCCCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhC------------CCCCCCcEEEECCEecccch
Confidence 4566777765 67999999998 999999999999999999999999 89999999999998875422
Q ss_pred ccCCCcceeeEEEEEEEccCCC----eEEeCcccCCc--cccc----------cCHhHHhhhhHHHHHhcCccccccccc
Q 020346 214 TKSGRGKHTTRHVSLLPLSGGG----YLADTPGFNQP--SLLK----------VTKQSLAQTFPEIKEMLKANEPAKCSF 277 (327)
Q Consensus 214 ~~~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~--~l~~----------~~~~~l~~~~~~~~~~LSgGq~q~~~~ 277 (327)
...++++++++|++.. ++.|+..+... .... ++..++..........||+||+||+.|
T Consensus 71 ------~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~l 144 (220)
T cd03263 71 ------KAARQSLGYCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSL 144 (220)
T ss_pred ------HHHhhhEEEecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHH
Confidence 1145679999997532 22222211100 0000 000011111111123499999999999
Q ss_pred cccccccCCceEEcccH------HHHHHHHHHHHHHH
Q 020346 278 NNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIR 308 (327)
Q Consensus 278 ~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~ 308 (327)
++++ +.+|.++++|+| ...+.+.++++++.
T Consensus 145 a~al-~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~ 180 (220)
T cd03263 145 AIAL-IGGPSVLLLDEPTSGLDPASRRAIWDLILEVR 180 (220)
T ss_pred HHHH-hcCCCEEEECCCCCCCCHHHHHHHHHHHHHHh
Confidence 9999 999999999965 35555556666554
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.9e-21 Score=190.12 Aligned_cols=153 Identities=15% Similarity=0.211 Sum_probs=112.5
Q ss_pred CCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccc
Q 020346 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (327)
Q Consensus 136 ~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~ 214 (327)
.++.+.++|++..+++++++.+ +|++++|+||||||||||+++|+| +++|++|+|+++|.++...+.
T Consensus 5 ~~~nls~~y~~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaG------------ll~p~sG~I~l~G~~i~~~~~ 72 (402)
T PRK09536 5 DVSDLSVEFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAING------------TLTPTAGTVLVAGDDVEALSA 72 (402)
T ss_pred EEeeEEEEECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhc------------CCCCCCcEEEECCEEcCcCCH
Confidence 4567888898888999999998 999999999999999999999999 899999999999998876553
Q ss_pred cCCCcceeeEEEEEEEccCCC----eEEeCcccCCc----c---------------ccccCHhHHhhhhHHHHHhcCccc
Q 020346 215 KSGRGKHTTRHVSLLPLSGGG----YLADTPGFNQP----S---------------LLKVTKQSLAQTFPEIKEMLKANE 271 (327)
Q Consensus 215 ~~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~----~---------------l~~~~~~~l~~~~~~~~~~LSgGq 271 (327)
.. ..+.+++++|.... .+.|+..+... . ++.+...++.+.. ...|||||
T Consensus 73 ~~-----~~~~ig~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~---~~~LSgGe 144 (402)
T PRK09536 73 RA-----ASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRP---VTSLSGGE 144 (402)
T ss_pred HH-----HhcceEEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCC---hhhCCHHH
Confidence 32 45679999997532 22232221110 0 0011111111111 23499999
Q ss_pred cccccccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 272 PAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 272 ~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
+||+.+++++ +++|.++++|+| .....++++++++..
T Consensus 145 rQRv~IArAL-~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~ 187 (402)
T PRK09536 145 RQRVLLARAL-AQATPVLLLDEPTASLDINHQVRTLELVRRLVD 187 (402)
T ss_pred HHHHHHHHHH-HcCCCEEEEECCcccCCHHHHHHHHHHHHHHHh
Confidence 9999999999 999999999965 455566677777754
|
|
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.9e-21 Score=173.82 Aligned_cols=156 Identities=13% Similarity=0.215 Sum_probs=107.3
Q ss_pred CceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccccc
Q 020346 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (327)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~ 215 (327)
++.+.++|++..+++++++.+ +|++++|+|+||||||||+++|+| +++|++|+|.++|.++...+..
T Consensus 3 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G------------l~~~~~G~i~~~g~~~~~~~~~ 70 (222)
T cd03224 3 VENLNAGYGKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMG------------LLPPRSGSIRFDGRDITGLPPH 70 (222)
T ss_pred EeeEEeecCCeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhC------------CCCCCCceEEECCEEcCCCCHH
Confidence 456777887777999999998 999999999999999999999999 8999999999999887654322
Q ss_pred CCCcceeeEEEEEEEccCCC----eEEeCcccCCccccccC----HhHHhhhh-------HHHHHhcCcccccccccccc
Q 020346 216 SGRGKHTTRHVSLLPLSGGG----YLADTPGFNQPSLLKVT----KQSLAQTF-------PEIKEMLKANEPAKCSFNNC 280 (327)
Q Consensus 216 ~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~~l~~~~----~~~l~~~~-------~~~~~~LSgGq~q~~~~~~~ 280 (327)
.. .++.++++||.+.. ++.|+..+......... ...+...+ ......||+||+||+.++++
T Consensus 71 ~~----~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~lara 146 (222)
T cd03224 71 ER----ARAGIGYVPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARA 146 (222)
T ss_pred HH----HhcCeEEeccccccCCCCcHHHHHHHHhhhcCchhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHH
Confidence 10 23568999987532 22222211110000000 01111111 11123499999999999999
Q ss_pred ccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 281 LHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 281 ~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
+ +.+|.++++|+| ...+.+.++++++..
T Consensus 147 l-~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~ 180 (222)
T cd03224 147 L-MSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRD 180 (222)
T ss_pred H-hcCCCEEEECCCcccCCHHHHHHHHHHHHHHHH
Confidence 9 999999999965 455566666666643
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.4e-21 Score=186.67 Aligned_cols=152 Identities=16% Similarity=0.199 Sum_probs=110.7
Q ss_pred cCCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccc--cceeecceeecc
Q 020346 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPIL--GSKWFEDQRVGE 211 (327)
Q Consensus 135 ~~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~--G~i~~~g~~v~~ 211 (327)
+.++.+.++|++..+++++++.+ +|++++|+||||||||||+++|+| +++|++ |+|+++|.++..
T Consensus 6 l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaG------------l~~p~~~~G~i~~~g~~~~~ 73 (362)
T TIGR03258 6 IRIDHLRVAYGANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAG------------FVKAAGLTGRIAIADRDLTH 73 (362)
T ss_pred EEEEEEEEEECCeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhC------------CCCCCCCCEEEEECCEECCC
Confidence 45677888888778999999998 899999999999999999999999 999999 999999998865
Q ss_pred ccccCCCcceeeEEEEEEEccCCC----eEEeCcccCCcc---------------ccccCHhHHhhhhHHHHHhcCcccc
Q 020346 212 VSTKSGRGKHTTRHVSLLPLSGGG----YLADTPGFNQPS---------------LLKVTKQSLAQTFPEIKEMLKANEP 272 (327)
Q Consensus 212 ~s~~~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~~---------------l~~~~~~~l~~~~~~~~~~LSgGq~ 272 (327)
.+. ..+.++|++|++.. ++.++..+.... ++.+.+.++.+..+. .|||||+
T Consensus 74 ~~~-------~~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~---~LSgGq~ 143 (362)
T TIGR03258 74 APP-------HKRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPA---QLSGGMQ 143 (362)
T ss_pred CCH-------HHCCEEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChh---hCCHHHH
Confidence 432 24579999997532 333433321100 111111122223332 3999999
Q ss_pred ccccccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 273 AKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 273 q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
||+++++++ +.+|.++++|+| .....+++.++++..
T Consensus 144 QRvaLARAL-~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~ 185 (362)
T TIGR03258 144 QRIAIARAI-AIEPDVLLLDEPLSALDANIRANMREEIAALHE 185 (362)
T ss_pred HHHHHHHHH-hcCCCEEEEcCccccCCHHHHHHHHHHHHHHHH
Confidence 999999999 999999999965 344455555555543
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=99.81 E-value=1e-20 Score=172.81 Aligned_cols=156 Identities=13% Similarity=0.170 Sum_probs=105.9
Q ss_pred CceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccccc
Q 020346 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (327)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~ 215 (327)
++.+.++|++..+++++++.+ +|++++|+|+||||||||+++|+| +++|++|+|+++|.++...+..
T Consensus 3 ~~~l~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~G------------l~~~~~G~i~~~g~~~~~~~~~ 70 (236)
T cd03219 3 VRGLTKRFGGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISG------------FLRPTSGSVLFDGEDITGLPPH 70 (236)
T ss_pred eeeeEEEECCEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcC------------CCCCCCceEEECCEECCCCCHH
Confidence 456777787777999999998 999999999999999999999999 8899999999999987654322
Q ss_pred CCCcceeeEEEEEEEccCCC----eEEeCcccCCccccc------------cC-HhHHhhh---------hHHHHHhcCc
Q 020346 216 SGRGKHTTRHVSLLPLSGGG----YLADTPGFNQPSLLK------------VT-KQSLAQT---------FPEIKEMLKA 269 (327)
Q Consensus 216 ~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~~l~~------------~~-~~~l~~~---------~~~~~~~LSg 269 (327)
.. .+..++|+||.+.. ++.|+..+....... -. ....... .......|||
T Consensus 71 ~~----~~~~i~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSg 146 (236)
T cd03219 71 EI----ARLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSY 146 (236)
T ss_pred HH----HhcCEEEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCH
Confidence 10 23458999997532 222222111000000 00 0001110 0111234999
Q ss_pred cccccccccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 270 NEPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 270 Gq~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
||+||+.+++++ +.+|.++++|+| ...+.+.+++.++..
T Consensus 147 G~~qrv~la~al-~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~ 191 (236)
T cd03219 147 GQQRRLEIARAL-ATDPKLLLLDEPAAGLNPEETEELAELIRELRE 191 (236)
T ss_pred HHHHHHHHHHHH-hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH
Confidence 999999999999 899999999965 355555566666643
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.81 E-value=7.3e-21 Score=174.47 Aligned_cols=158 Identities=17% Similarity=0.236 Sum_probs=107.3
Q ss_pred CceeeccCc-chhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccc
Q 020346 137 YEPLFCSVE-SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (327)
Q Consensus 137 ~~~~~~s~~-~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~ 214 (327)
++.+.++|+ +..+++++++.+ +|++++|+|+||||||||+++|+| +++|++|+|.++|.++...+.
T Consensus 4 ~~~l~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G------------l~~~~~G~i~~~g~~~~~~~~ 71 (243)
T TIGR02315 4 VENLSKVYPNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINR------------LVEPSSGSILLEGTDITKLRG 71 (243)
T ss_pred EEeeeeecCCCcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhC------------CcCCCccEEEECCEEhhhCCH
Confidence 466777887 677999999998 999999999999999999999999 899999999999988765432
Q ss_pred cCCCcceeeEEEEEEEccCCC----eEEeCcccCCcc--------cc---ccCHhHHhhhh---------HHHHHhcCcc
Q 020346 215 KSGRGKHTTRHVSLLPLSGGG----YLADTPGFNQPS--------LL---KVTKQSLAQTF---------PEIKEMLKAN 270 (327)
Q Consensus 215 ~~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~~--------l~---~~~~~~l~~~~---------~~~~~~LSgG 270 (327)
... ...++.++++||.+.. ++.|+..+.... .. ........+.. ......||||
T Consensus 72 ~~~--~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG 149 (243)
T TIGR02315 72 KKL--RKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGG 149 (243)
T ss_pred HHH--HHHHhheEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHH
Confidence 110 0134578999987532 222332211000 00 00000111111 1112349999
Q ss_pred ccccccccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 271 EPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 271 q~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
|+||+++++++ +.+|.++++|+| ...+.+.++++++..
T Consensus 150 ~~qrv~la~al-~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~ 193 (243)
T TIGR02315 150 QQQRVAIARAL-AQQPDLILADEPIASLDPKTSKQVMDYLKRINK 193 (243)
T ss_pred HHHHHHHHHHH-hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence 99999999999 999999999965 355556666666643
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.3e-21 Score=172.95 Aligned_cols=153 Identities=14% Similarity=0.179 Sum_probs=106.7
Q ss_pred CceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccccc
Q 020346 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (327)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~ 215 (327)
++.+.++|.+..+++++++.+ +|++++|+|+||+|||||+++|+| +.+|++|+|+++|.++... .
T Consensus 3 ~~~l~~~~~~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~G------------l~~~~~G~i~~~g~~~~~~--~ 68 (208)
T cd03268 3 TNDLTKTYGKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILG------------LIKPDSGEITFDGKSYQKN--I 68 (208)
T ss_pred EEEEEEEECCeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhC------------CcCCCceEEEECCCcccch--H
Confidence 456777787778999999998 999999999999999999999999 8899999999999877543 1
Q ss_pred CCCcceeeEEEEEEEccCCC----eEEeCcccCCc--ccc--c----cCHhHHhhhhHHHHHhcCccccccccccccccc
Q 020346 216 SGRGKHTTRHVSLLPLSGGG----YLADTPGFNQP--SLL--K----VTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHL 283 (327)
Q Consensus 216 ~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~--~l~--~----~~~~~l~~~~~~~~~~LSgGq~q~~~~~~~~h~ 283 (327)
. ..+.++++||++.. ++.|+..+... ... . ++...+..........||+||+||+.+++++ +
T Consensus 69 ~-----~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al-~ 142 (208)
T cd03268 69 E-----ALRRIGALIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALAL-L 142 (208)
T ss_pred H-----HHhhEEEecCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHH-h
Confidence 1 34578999997532 22222211100 000 0 0000111111222345999999999999999 9
Q ss_pred cCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 284 GEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 284 ~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
.+|.++++|+| ...+.+.+++.++..
T Consensus 143 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~ 174 (208)
T cd03268 143 GNPDLLILDEPTNGLDPDGIKELRELILSLRD 174 (208)
T ss_pred cCCCEEEECCCcccCCHHHHHHHHHHHHHHHH
Confidence 99999999965 355555566666654
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.7e-21 Score=174.84 Aligned_cols=158 Identities=18% Similarity=0.257 Sum_probs=106.8
Q ss_pred CceeeccCcc-hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccc
Q 020346 137 YEPLFCSVES-KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (327)
Q Consensus 137 ~~~~~~s~~~-~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~ 214 (327)
++.+.++|++ ..+++++++.+ +|++++|+|+||||||||+++|+| +++|++|+|+++|.++...+.
T Consensus 3 ~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G------------l~~~~~G~i~~~g~~~~~~~~ 70 (241)
T cd03256 3 VENLSKTYPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNG------------LVEPTSGSVLIDGTDINKLKG 70 (241)
T ss_pred EeeEEEecCCccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC------------CcCCCCceEEECCEeccccCH
Confidence 4567788876 67999999998 999999999999999999999999 889999999999998765431
Q ss_pred cCCCcceeeEEEEEEEccCCC----eEEeCcccCCcc--------cc---ccCHhHHhhhh-----HH----HHHhcCcc
Q 020346 215 KSGRGKHTTRHVSLLPLSGGG----YLADTPGFNQPS--------LL---KVTKQSLAQTF-----PE----IKEMLKAN 270 (327)
Q Consensus 215 ~~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~~--------l~---~~~~~~l~~~~-----~~----~~~~LSgG 270 (327)
.. .....+.++++||+... ++.|+..+.... .. ........... .+ ....||||
T Consensus 71 ~~--~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G 148 (241)
T cd03256 71 KA--LRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGG 148 (241)
T ss_pred hH--HHHHHhccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHH
Confidence 10 00134578999987532 222222111000 00 00000011100 00 11239999
Q ss_pred ccccccccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 271 EPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 271 q~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
|+||+.+++++ +.+|.++|+|+| ...+.+.++++++..
T Consensus 149 ~~qrv~la~al-~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~ 192 (241)
T cd03256 149 QQQRVAIARAL-MQQPKLILADEPVASLDPASSRQVMDLLKRINR 192 (241)
T ss_pred HHHHHHHHHHH-hcCCCEEEEeCccccCCHHHHHHHHHHHHHHHH
Confidence 99999999999 999999999965 355555666666643
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.7e-21 Score=182.75 Aligned_cols=146 Identities=12% Similarity=0.161 Sum_probs=102.4
Q ss_pred cCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcce
Q 020346 143 SVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKH 221 (327)
Q Consensus 143 s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~ 221 (327)
+|++..+++++++.+ +|++++|+||||||||||+++|+| +++|++|+|.++|.++...+. .
T Consensus 2 ~y~~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~G------------l~~p~~G~i~~~g~~~~~~~~------~ 63 (302)
T TIGR01188 2 VYGDFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTT------------LLRPTSGTARVAGYDVVREPR------K 63 (302)
T ss_pred eeCCeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhC------------CCCCCceEEEECCEEcccCHH------H
Confidence 355567899999998 999999999999999999999999 899999999999988754221 1
Q ss_pred eeEEEEEEEccCCC----eEEeCcccCCc--c-------------ccccCHhHHhhhhHHHHHhcCcccccccccccccc
Q 020346 222 TTRHVSLLPLSGGG----YLADTPGFNQP--S-------------LLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLH 282 (327)
Q Consensus 222 tt~~i~~v~q~~~~----~i~Dtpg~~~~--~-------------l~~~~~~~l~~~~~~~~~~LSgGq~q~~~~~~~~h 282 (327)
.++.++++||.+.. ++.++..+... . ++.+......+ .....|||||+||+.+++|+
T Consensus 64 ~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~---~~~~~LSgG~~qrv~la~al- 139 (302)
T TIGR01188 64 VRRSIGIVPQYASVDEDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAAD---RPVGTYSGGMRRRLDIAASL- 139 (302)
T ss_pred HHhhcEEecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhC---CchhhCCHHHHHHHHHHHHH-
Confidence 45679999997532 22222111000 0 00011111111 11234999999999999999
Q ss_pred ccCCceEEcccH------HHHHHHHHHHHHHHHh
Q 020346 283 LGEPGCVVKGDW------ERYQYYFQLLDEIRIR 310 (327)
Q Consensus 283 ~~ep~~~v~~~~------~r~~~~~~ll~e~~~~ 310 (327)
+++|.++++|+| .....+.++++++...
T Consensus 140 ~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~ 173 (302)
T TIGR01188 140 IHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEE 173 (302)
T ss_pred hcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhC
Confidence 999999999954 4556666777776543
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1e-20 Score=179.23 Aligned_cols=154 Identities=19% Similarity=0.238 Sum_probs=113.2
Q ss_pred CCceeeccCc-chhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccc
Q 020346 136 GYEPLFCSVE-SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (327)
Q Consensus 136 ~~~~~~~s~~-~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s 213 (327)
....+..+|+ ...+++++++.+ +|++++|+||||||||||||+|+| +..|++|+|.++|.+...-.
T Consensus 6 ~~~~l~k~~~~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~g------------l~~p~~G~i~i~G~~~~~~~ 73 (293)
T COG1131 6 EVRNLTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAG------------LLKPTSGEILVLGYDVVKEP 73 (293)
T ss_pred eecceEEEeCCCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhC------------CcCCCceEEEEcCEeCccCH
Confidence 4567888899 689999999998 899999999999999999999999 99999999999998876532
Q ss_pred ccCCCcceeeEEEEEEEccCCCe----EEeCcccCCc---------------cccccCHhHHhhhhHHHHHhcCcccccc
Q 020346 214 TKSGRGKHTTRHVSLLPLSGGGY----LADTPGFNQP---------------SLLKVTKQSLAQTFPEIKEMLKANEPAK 274 (327)
Q Consensus 214 ~~~~~g~~tt~~i~~v~q~~~~~----i~Dtpg~~~~---------------~l~~~~~~~l~~~~~~~~~~LSgGq~q~ 274 (327)
.. ..++++|+||.+..+ +.++.-+... .++.+.+.+ ........||+||+||
T Consensus 74 ~~------~~~~igy~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~---~~~~~~~~lS~G~kqr 144 (293)
T COG1131 74 AK------VRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLED---KANKKVRTLSGGMKQR 144 (293)
T ss_pred HH------HHhheEEEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCch---hhCcchhhcCHHHHHH
Confidence 21 567899999976432 2222111100 011111111 0122234599999999
Q ss_pred ccccccccccCCceEEcccH------HHHHHHHHHHHHHHHhH
Q 020346 275 CSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRIRE 311 (327)
Q Consensus 275 ~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~~~ 311 (327)
+.++.++ +++|.++++|+| .-....+++++++...+
T Consensus 145 l~ia~aL-~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g 186 (293)
T COG1131 145 LSIALAL-LHDPELLILDEPTSGLDPESRREIWELLRELAKEG 186 (293)
T ss_pred HHHHHHH-hcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCC
Confidence 9999998 999999999954 56666777777776655
|
|
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=99.80 E-value=7.3e-21 Score=173.57 Aligned_cols=157 Identities=17% Similarity=0.212 Sum_probs=107.1
Q ss_pred CceeeccCcch----hhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecc
Q 020346 137 YEPLFCSVESK----LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (327)
Q Consensus 137 ~~~~~~s~~~~----~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~ 211 (327)
++.+.++|++. .+++++++.+ +|++++|+|+||||||||+++|+| +++|++|+|.++|.++..
T Consensus 4 ~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G------------~~~~~~G~i~~~g~~~~~ 71 (233)
T cd03258 4 LKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCING------------LERPTSGSVLVDGTDLTL 71 (233)
T ss_pred EecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhC------------CCCCCCceEEECCEEccc
Confidence 45677777655 7999999998 999999999999999999999999 899999999999998765
Q ss_pred ccccCCCcceeeEEEEEEEccCCC----eEEeCcccCCccccccCH-------h------HHhhhhHHHHHhcCcccccc
Q 020346 212 VSTKSGRGKHTTRHVSLLPLSGGG----YLADTPGFNQPSLLKVTK-------Q------SLAQTFPEIKEMLKANEPAK 274 (327)
Q Consensus 212 ~s~~~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~~l~~~~~-------~------~l~~~~~~~~~~LSgGq~q~ 274 (327)
.+.... ...++.++++||.+.. ++.|+..+... ...... . .+..........||+||+||
T Consensus 72 ~~~~~~--~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr 148 (233)
T cd03258 72 LSGKEL--RKARRRIGMIFQHFNLLSSRTVFENVALPLE-IAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQR 148 (233)
T ss_pred CCHHHH--HHHHhheEEEccCcccCCCCcHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHH
Confidence 432110 0124678999997532 22222211100 000000 0 01111111123499999999
Q ss_pred ccccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 275 CSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 275 ~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
+++++++ +.+|.++|+|+| ...+.+.+++.++..
T Consensus 149 v~la~al-~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~ 188 (233)
T cd03258 149 VGIARAL-ANNPKVLLCDEATSALDPETTQSILALLRDINR 188 (233)
T ss_pred HHHHHHH-hcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHH
Confidence 9999999 999999999965 455666667766644
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.4e-20 Score=163.09 Aligned_cols=133 Identities=18% Similarity=0.314 Sum_probs=101.6
Q ss_pred CceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccccc
Q 020346 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (327)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~ 215 (327)
++.+.++|.+..+++++++.+ +|++++|+|+||+|||||+++|+| +++|++|+|+++|.++...+ .
T Consensus 3 ~~~l~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G------------~~~~~~G~i~~~g~~~~~~~-~ 69 (173)
T cd03230 3 VRNLSKRYGKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILG------------LLKPDSGEIKVLGKDIKKEP-E 69 (173)
T ss_pred EEEEEEEECCeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhC------------CCCCCCeEEEECCEEcccch-H
Confidence 455666776667899999998 999999999999999999999999 88999999999998876433 1
Q ss_pred CCCcceeeEEEEEEEccCCCeEEeCcccCC-ccccccCHhHHhhhhHHHHHhcCccccccccccccccccCCceEEcccH
Q 020346 216 SGRGKHTTRHVSLLPLSGGGYLADTPGFNQ-PSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDW 294 (327)
Q Consensus 216 ~~~g~~tt~~i~~v~q~~~~~i~Dtpg~~~-~~l~~~~~~~l~~~~~~~~~~LSgGq~q~~~~~~~~h~~ep~~~v~~~~ 294 (327)
. .+..++|++|++.. +.. ...+++ . ||+||+||+.+++++ +.+|.++++|||
T Consensus 70 ~-----~~~~i~~~~q~~~~-------~~~~tv~~~~-----~---------LS~G~~qrv~laral-~~~p~illlDEP 122 (173)
T cd03230 70 E-----VKRRIGYLPEEPSL-------YENLTVRENL-----K---------LSGGMKQRLALAQAL-LHDPELLILDEP 122 (173)
T ss_pred h-----hhccEEEEecCCcc-------ccCCcHHHHh-----h---------cCHHHHHHHHHHHHH-HcCCCEEEEeCC
Confidence 1 35679999996311 111 111111 1 999999999999999 999999999965
Q ss_pred ------HHHHHHHHHHHHHHH
Q 020346 295 ------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 295 ------~r~~~~~~ll~e~~~ 309 (327)
...+...++++++.+
T Consensus 123 t~~LD~~~~~~l~~~l~~~~~ 143 (173)
T cd03230 123 TSGLDPESRREFWELLRELKK 143 (173)
T ss_pred ccCCCHHHHHHHHHHHHHHHH
Confidence 355555666666644
|
In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=99.80 E-value=9.4e-21 Score=174.03 Aligned_cols=154 Identities=15% Similarity=0.241 Sum_probs=107.8
Q ss_pred CceeeccCcc-hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccc
Q 020346 137 YEPLFCSVES-KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (327)
Q Consensus 137 ~~~~~~s~~~-~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~ 214 (327)
++.+.++|++ ..+++++++.+ +|++++|+|+||+|||||+++|+| +++|++|+|+++|.++.....
T Consensus 3 ~~~l~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G------------~~~~~~G~i~~~g~~~~~~~~ 70 (242)
T cd03295 3 FENVTKRYGGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINR------------LIEPTSGEIFIDGEDIREQDP 70 (242)
T ss_pred EEEEEEEeCCcceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhc------------CCCCCCceEEECCeEcCcCCh
Confidence 4567778876 67899999998 999999999999999999999999 889999999999998765432
Q ss_pred cCCCcceeeEEEEEEEccCCC----eEEeCcccCCccccccC-------HhHHhh--------hhHHHHHhcCccccccc
Q 020346 215 KSGRGKHTTRHVSLLPLSGGG----YLADTPGFNQPSLLKVT-------KQSLAQ--------TFPEIKEMLKANEPAKC 275 (327)
Q Consensus 215 ~~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~~l~~~~-------~~~l~~--------~~~~~~~~LSgGq~q~~ 275 (327)
.. .+..++|+||.+.. ++.++..+... ..... ..++.. ........||+||+||+
T Consensus 71 ~~-----~~~~i~~~~q~~~~~~~~tv~e~l~~~~~-~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv 144 (242)
T cd03295 71 VE-----LRRKIGYVIQQIGLFPHMTVEENIALVPK-LLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRV 144 (242)
T ss_pred HH-----hhcceEEEccCccccCCCcHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHH
Confidence 21 34578999997522 22233222100 00000 001011 11111234999999999
Q ss_pred cccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 276 SFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 276 ~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
++++++ +.+|.++++|+| ...+.+.+++.++..
T Consensus 145 ~laral-~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~ 183 (242)
T cd03295 145 GVARAL-AADPPLLLMDEPFGALDPITRDQLQEEFKRLQQ 183 (242)
T ss_pred HHHHHH-hcCCCEEEecCCcccCCHHHHHHHHHHHHHHHH
Confidence 999999 999999999965 355566666666644
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.5e-20 Score=164.42 Aligned_cols=133 Identities=19% Similarity=0.283 Sum_probs=101.2
Q ss_pred CceeeccCcc--hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccc
Q 020346 137 YEPLFCSVES--KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (327)
Q Consensus 137 ~~~~~~s~~~--~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s 213 (327)
++.+.++|.+ ..+++++++.+ +|+.++|+|+||+|||||+++|+| +++|++|+|.++|.++...+
T Consensus 3 ~~~l~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G------------~~~~~~G~i~~~g~~~~~~~ 70 (173)
T cd03246 3 VENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILG------------LLRPTSGRVRLDGADISQWD 70 (173)
T ss_pred EEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHh------------ccCCCCCeEEECCEEcccCC
Confidence 4566777764 45899999998 999999999999999999999999 89999999999999876554
Q ss_pred ccCCCcceeeEEEEEEEccCCCeEEeCcccCCccccccCHhHHhhhhHHHHHhcCccccccccccccccccCCceEEccc
Q 020346 214 TKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGD 293 (327)
Q Consensus 214 ~~~~~g~~tt~~i~~v~q~~~~~i~Dtpg~~~~~l~~~~~~~l~~~~~~~~~~LSgGq~q~~~~~~~~h~~ep~~~v~~~ 293 (327)
... .++.+++++|++.. +.....+++ ||+||+||+.+++++ +.+|+++++|+
T Consensus 71 ~~~-----~~~~i~~~~q~~~~-------~~~tv~~~l---------------LS~G~~qrv~la~al-~~~p~~lllDE 122 (173)
T cd03246 71 PNE-----LGDHVGYLPQDDEL-------FSGSIAENI---------------LSGGQRQRLGLARAL-YGNPRILVLDE 122 (173)
T ss_pred HHH-----HHhheEEECCCCcc-------ccCcHHHHC---------------cCHHHHHHHHHHHHH-hcCCCEEEEEC
Confidence 322 35678899985311 111111111 999999999999999 99999999996
Q ss_pred H------HHHHHHHHHHHHHHH
Q 020346 294 W------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 294 ~------~r~~~~~~ll~e~~~ 309 (327)
| ...+.+.++++++..
T Consensus 123 Pt~~LD~~~~~~l~~~l~~~~~ 144 (173)
T cd03246 123 PNSHLDVEGERALNQAIAALKA 144 (173)
T ss_pred CccccCHHHHHHHHHHHHHHHh
Confidence 5 344455556665543
|
They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra |
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=6.7e-21 Score=186.32 Aligned_cols=137 Identities=18% Similarity=0.271 Sum_probs=103.6
Q ss_pred cCCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccc
Q 020346 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (327)
Q Consensus 135 ~~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s 213 (327)
+.++.+.++|++..+++++++.+ +|++++|+||||||||||+++|+| +.+|++|+|+++|.++...+
T Consensus 20 l~l~~v~~~~~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaG------------l~~p~~G~I~i~g~~i~~~~ 87 (377)
T PRK11607 20 LEIRNLTKSFDGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAG------------FEQPTAGQIMLDGVDLSHVP 87 (377)
T ss_pred EEEEeEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhC------------CCCCCceEEEECCEECCCCC
Confidence 44567788887777899999998 899999999999999999999999 99999999999999886543
Q ss_pred ccCCCcceeeEEEEEEEccCC----CeEEeCcccCCcc---------------ccccCHhHHhhhhHHHHHhcCcccccc
Q 020346 214 TKSGRGKHTTRHVSLLPLSGG----GYLADTPGFNQPS---------------LLKVTKQSLAQTFPEIKEMLKANEPAK 274 (327)
Q Consensus 214 ~~~~~g~~tt~~i~~v~q~~~----~~i~Dtpg~~~~~---------------l~~~~~~~l~~~~~~~~~~LSgGq~q~ 274 (327)
. ..+.++|++|++. .++.|+..+.... ++.+.+..+.+..+. .|||||+||
T Consensus 88 ~-------~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~---~LSgGq~QR 157 (377)
T PRK11607 88 P-------YQRPINMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPH---QLSGGQRQR 157 (377)
T ss_pred H-------HHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChh---hCCHHHHHH
Confidence 2 3567999999853 3444544332110 011111222233333 399999999
Q ss_pred ccccccccccCCceEEcccH
Q 020346 275 CSFNNCLHLGEPGCVVKGDW 294 (327)
Q Consensus 275 ~~~~~~~h~~ep~~~v~~~~ 294 (327)
+++++++ +.+|.++++|+|
T Consensus 158 VaLARAL-~~~P~lLLLDEP 176 (377)
T PRK11607 158 VALARSL-AKRPKLLLLDEP 176 (377)
T ss_pred HHHHHHH-hcCCCEEEEeCC
Confidence 9999999 999999999965
|
|
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.8e-21 Score=179.62 Aligned_cols=153 Identities=20% Similarity=0.252 Sum_probs=108.2
Q ss_pred CCceeeccCc-chhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccc
Q 020346 136 GYEPLFCSVE-SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (327)
Q Consensus 136 ~~~~~~~s~~-~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s 213 (327)
.++.+.++|. ...+++++++.+ +|++++|+|+||||||||+++|+| +++|++|+|+++|.++...+
T Consensus 6 ~~~~l~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G------------l~~p~~G~i~~~g~~~~~~~ 73 (274)
T PRK13647 6 EVEDLHFRYKDGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNG------------IYLPQRGRVKVMGREVNAEN 73 (274)
T ss_pred EEEEEEEEeCCCCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhc------------CCCCCceEEEECCEECCCCC
Confidence 4567778885 456999999998 999999999999999999999999 89999999999999875443
Q ss_pred ccCCCcceeeEEEEEEEccCCC-----eEEeCcccCCc--c-------------ccccCHhHHhhhhHHHHHhcCccccc
Q 020346 214 TKSGRGKHTTRHVSLLPLSGGG-----YLADTPGFNQP--S-------------LLKVTKQSLAQTFPEIKEMLKANEPA 273 (327)
Q Consensus 214 ~~~~~g~~tt~~i~~v~q~~~~-----~i~Dtpg~~~~--~-------------l~~~~~~~l~~~~~~~~~~LSgGq~q 273 (327)
... .++.++|++|++.. ++.++..+... . ++.+......+..+ ..|||||+|
T Consensus 74 ~~~-----~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~---~~LSgG~~q 145 (274)
T PRK13647 74 EKW-----VRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPP---YHLSYGQKK 145 (274)
T ss_pred HHH-----HHhhEEEEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCh---hhCCHHHHH
Confidence 221 45679999997521 22222222100 0 00011111112222 349999999
Q ss_pred cccccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 274 KCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 274 ~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
|+.+++++ +.+|+++++|+| .-...+.+++.++..
T Consensus 146 rv~laraL-~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~ 186 (274)
T PRK13647 146 RVAIAGVL-AMDPDVIVLDEPMAYLDPRGQETLMEILDRLHN 186 (274)
T ss_pred HHHHHHHH-HcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHH
Confidence 99999999 999999999955 455566667766654
|
|
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.3e-20 Score=172.86 Aligned_cols=157 Identities=11% Similarity=0.147 Sum_probs=108.0
Q ss_pred CCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccc
Q 020346 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (327)
Q Consensus 136 ~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~ 214 (327)
.++.+.++|++..+++++++.+ +|++++|+|+||+|||||+++|+| +++|++|+|.++|.++...+.
T Consensus 5 ~~~~l~~~~~~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G------------~~~~~~G~i~~~g~~~~~~~~ 72 (241)
T PRK10895 5 TAKNLAKAYKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVG------------IVPRDAGNIIIDDEDISLLPL 72 (241)
T ss_pred EEeCcEEEeCCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhC------------CCCCCCcEEEECCEECCCCCH
Confidence 3456777787778999999998 999999999999999999999999 889999999999998765432
Q ss_pred cCCCcceeeEEEEEEEccCCC----eEEeCcccCCccccccCH-------hH------HhhhhHHHHHhcCccccccccc
Q 020346 215 KSGRGKHTTRHVSLLPLSGGG----YLADTPGFNQPSLLKVTK-------QS------LAQTFPEIKEMLKANEPAKCSF 277 (327)
Q Consensus 215 ~~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~~l~~~~~-------~~------l~~~~~~~~~~LSgGq~q~~~~ 277 (327)
.. ..+..+++++|.+.. ++.|+..+.......... .+ +..........||+||+||+.+
T Consensus 73 ~~----~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~l 148 (241)
T PRK10895 73 HA----RARRGIGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEI 148 (241)
T ss_pred HH----HHHhCeEEeccCCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHH
Confidence 11 124568999997532 233332221100000000 01 1111111223499999999999
Q ss_pred cccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 278 NNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 278 ~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
++++ +.+|.++++|+| ...+.+.++++++..
T Consensus 149 aral-~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~ 185 (241)
T PRK10895 149 ARAL-AANPKFILLDEPFAGVDPISVIDIKRIIEHLRD 185 (241)
T ss_pred HHHH-hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh
Confidence 9999 999999999965 344455566666644
|
|
| >cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.4e-20 Score=168.54 Aligned_cols=151 Identities=15% Similarity=0.202 Sum_probs=106.5
Q ss_pred CceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccccc
Q 020346 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (327)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~ 215 (327)
++.+.++|.+..+++++++.+ +|++++|+|+||+|||||+++|+| +++|++|+|.++|.++...+.
T Consensus 3 i~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G------------~~~~~~G~i~~~g~~~~~~~~- 69 (201)
T cd03231 3 ADELTCERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAG------------LSPPLAGRVLLNGGPLDFQRD- 69 (201)
T ss_pred EEEEEEEeCCceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhC------------CCCCCCcEEEECCEecccccH-
Confidence 456777887778899999998 999999999999999999999999 899999999999988654321
Q ss_pred CCCcceeeEEEEEEEccCCC----eEEeCcccCCcc---------ccccCHhHHhhhhHHHHHhcCcccccccccccccc
Q 020346 216 SGRGKHTTRHVSLLPLSGGG----YLADTPGFNQPS---------LLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLH 282 (327)
Q Consensus 216 ~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~~---------l~~~~~~~l~~~~~~~~~~LSgGq~q~~~~~~~~h 282 (327)
..++.+++++|.+.. ++.|+..+.... ++.+......+. ....||+||+||+++++++
T Consensus 70 -----~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~---~~~~LS~G~~qrl~laral- 140 (201)
T cd03231 70 -----SIARGLLYLGHAPGIKTTLSVLENLRFWHADHSDEQVEEALARVGLNGFEDR---PVAQLSAGQQRRVALARLL- 140 (201)
T ss_pred -----HhhhheEEeccccccCCCcCHHHHHHhhcccccHHHHHHHHHHcCChhhhcC---chhhCCHHHHHHHHHHHHH-
Confidence 145678999986432 222222211100 011111111111 1234999999999999999
Q ss_pred ccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 283 LGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 283 ~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
+.+|+++|+|+| ...+...+++.++..
T Consensus 141 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~ 173 (201)
T cd03231 141 LSGRPLWILDEPTTALDKAGVARFAEAMAGHCA 173 (201)
T ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Confidence 999999999965 455555666666543
|
The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. |
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=99.80 E-value=6.1e-21 Score=171.57 Aligned_cols=151 Identities=21% Similarity=0.278 Sum_probs=105.4
Q ss_pred CceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccccc
Q 020346 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (327)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~ 215 (327)
++.+.++|.+..+++++++.+ +| +++|+|+||+|||||+++|+| +++|++|+|+++|.++...+ .
T Consensus 3 ~~~~~~~~~~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~G------------l~~~~~G~i~~~g~~~~~~~-~ 68 (211)
T cd03264 3 LENLTKRYGKKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILAT------------LTPPSSGTIRIDGQDVLKQP-Q 68 (211)
T ss_pred EEEEEEEECCEEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhC------------CCCCCccEEEECCCccccch-H
Confidence 456777777777999999998 78 999999999999999999999 89999999999998775433 1
Q ss_pred CCCcceeeEEEEEEEccCCC----eEEeCcccCCccccccCH-------h------HHhhhhHHHHHhcCcccccccccc
Q 020346 216 SGRGKHTTRHVSLLPLSGGG----YLADTPGFNQPSLLKVTK-------Q------SLAQTFPEIKEMLKANEPAKCSFN 278 (327)
Q Consensus 216 ~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~~l~~~~~-------~------~l~~~~~~~~~~LSgGq~q~~~~~ 278 (327)
. .++.+++++|++.. ++.|+..+... ...... . .+..........||+||+||+.++
T Consensus 69 ~-----~~~~i~~~~q~~~~~~~~tv~~~l~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la 142 (211)
T cd03264 69 K-----LRRRIGYLPQEFGVYPNFTVREFLDYIAW-LKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIA 142 (211)
T ss_pred H-----HHhheEEecCCCcccccCCHHHHHHHHHH-HhCCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHH
Confidence 1 45678999997532 22222211100 000000 0 111111112234999999999999
Q ss_pred ccccccCCceEEcccH------HHHHHHHHHHHHHH
Q 020346 279 NCLHLGEPGCVVKGDW------ERYQYYFQLLDEIR 308 (327)
Q Consensus 279 ~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~ 308 (327)
+++ +.+|.++++|+| ...+.+.++++++.
T Consensus 143 ~al-~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~ 177 (211)
T cd03264 143 QAL-VGDPSILIVDEPTAGLDPEERIRFRNLLSELG 177 (211)
T ss_pred HHH-hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHh
Confidence 999 999999999965 45566666776664
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=99.80 E-value=8.6e-21 Score=170.83 Aligned_cols=149 Identities=20% Similarity=0.289 Sum_probs=102.9
Q ss_pred ceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccC
Q 020346 138 EPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKS 216 (327)
Q Consensus 138 ~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~ 216 (327)
+.+.++|++..+++++++.+ +|++++|+|+||||||||+++|+| +++|++|+|+++|.++..
T Consensus 3 ~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G------------~~~p~~G~i~~~g~~~~~----- 65 (213)
T cd03235 3 EDLTVSYGGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILG------------LLKPTSGSIRVFGKPLEK----- 65 (213)
T ss_pred ccceeEECCEEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcC------------CCCCCCCEEEECCccHHH-----
Confidence 45667777677899999998 999999999999999999999999 889999999999987641
Q ss_pred CCcceeeEEEEEEEccCCC------eEEeCcccCCcc-------ccccCHhHHhhhh-----HH----HHHhcCcccccc
Q 020346 217 GRGKHTTRHVSLLPLSGGG------YLADTPGFNQPS-------LLKVTKQSLAQTF-----PE----IKEMLKANEPAK 274 (327)
Q Consensus 217 ~~g~~tt~~i~~v~q~~~~------~i~Dtpg~~~~~-------l~~~~~~~l~~~~-----~~----~~~~LSgGq~q~ 274 (327)
.++.++|++|++.. ++.|+..+.... ............. ++ ....|||||+||
T Consensus 66 -----~~~~i~~v~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qr 140 (213)
T cd03235 66 -----ERKRIGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQR 140 (213)
T ss_pred -----HHhheEEeccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHH
Confidence 34568999987532 222222111000 0000000111100 11 123499999999
Q ss_pred ccccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 275 CSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 275 ~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
+.+++++ +.+|.++++|+| ...+...+++.++..
T Consensus 141 v~la~al-~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~ 180 (213)
T cd03235 141 VLLARAL-VQDPDLLLLDEPFAGVDPKTQEDIYELLRELRR 180 (213)
T ss_pred HHHHHHH-HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh
Confidence 9999999 899999999965 455555666666643
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea | Back alignment and domain information |
|---|
Probab=99.80 E-value=6.8e-21 Score=167.64 Aligned_cols=137 Identities=22% Similarity=0.313 Sum_probs=103.4
Q ss_pred CceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccccc
Q 020346 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (327)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~ 215 (327)
++.+.++|.+..+++++++.+ +|++++|+|+||+|||||+++|+| +++|++|+|.++|.++...+..
T Consensus 2 ~~~l~~~~~~~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G------------~~~~~~G~v~~~g~~~~~~~~~ 69 (180)
T cd03214 2 VENLSVGYGGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAG------------LLKPSSGEILLDGKDLASLSPK 69 (180)
T ss_pred eeEEEEEECCeeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhC------------CCCCCCcEEEECCEECCcCCHH
Confidence 345677777667899999998 999999999999999999999999 8999999999999987654322
Q ss_pred CCCcceeeEEEEEEEccCCCeEEeCcccCCccccccCHhHHhhhhHHHHHhcCccccccccccccccccCCceEEcccH-
Q 020346 216 SGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDW- 294 (327)
Q Consensus 216 ~~~g~~tt~~i~~v~q~~~~~i~Dtpg~~~~~l~~~~~~~l~~~~~~~~~~LSgGq~q~~~~~~~~h~~ep~~~v~~~~- 294 (327)
. .+..++|++| .++.+...+.....+ ..||+||+||+++++++ +.+|.++++|+|
T Consensus 70 ~-----~~~~i~~~~q---------------~l~~~gl~~~~~~~~---~~LS~G~~qrl~laral-~~~p~llllDEP~ 125 (180)
T cd03214 70 E-----LARKIAYVPQ---------------ALELLGLAHLADRPF---NELSGGERQRVLLARAL-AQEPPILLLDEPT 125 (180)
T ss_pred H-----HHHHHhHHHH---------------HHHHcCCHhHhcCCc---ccCCHHHHHHHHHHHHH-hcCCCEEEEeCCc
Confidence 1 3345777776 222222222222222 33999999999999999 999999999965
Q ss_pred -----HHHHHHHHHHHHHHH
Q 020346 295 -----ERYQYYFQLLDEIRI 309 (327)
Q Consensus 295 -----~r~~~~~~ll~e~~~ 309 (327)
+-.+...++++++..
T Consensus 126 ~~LD~~~~~~~~~~l~~~~~ 145 (180)
T cd03214 126 SHLDIAHQIELLELLRRLAR 145 (180)
T ss_pred cCCCHHHHHHHHHHHHHHHH
Confidence 455666667776654
|
Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. |
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.80 E-value=9.7e-21 Score=171.27 Aligned_cols=157 Identities=18% Similarity=0.231 Sum_probs=105.7
Q ss_pred CceeeccCcc----hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecc
Q 020346 137 YEPLFCSVES----KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (327)
Q Consensus 137 ~~~~~~s~~~----~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~ 211 (327)
++.+.++|.+ ..+++++++.+ +|++++|+|+||||||||+++|+| +++|++|+|+++|.++..
T Consensus 4 ~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G------------~~~~~~G~i~~~g~~~~~ 71 (221)
T TIGR02211 4 CENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGG------------LDNPTSGEVLFNGQSLSK 71 (221)
T ss_pred EEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhC------------CCCCCCcEEEECCEEhhh
Confidence 4566777753 45899999998 999999999999999999999999 889999999999998766
Q ss_pred ccccCCCccee-eEEEEEEEccCC----CeEEeCcccCCccccccCH----h---H------HhhhhHHHHHhcCccccc
Q 020346 212 VSTKSGRGKHT-TRHVSLLPLSGG----GYLADTPGFNQPSLLKVTK----Q---S------LAQTFPEIKEMLKANEPA 273 (327)
Q Consensus 212 ~s~~~~~g~~t-t~~i~~v~q~~~----~~i~Dtpg~~~~~l~~~~~----~---~------l~~~~~~~~~~LSgGq~q 273 (327)
.+.... +.. ++.++|++|.+. .++.|+..+... ...... . + +..........|||||+|
T Consensus 72 ~~~~~~--~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~q 148 (221)
T TIGR02211 72 LSSNER--AKLRNKKLGFIYQFHHLLPDFTALENVAMPLL-IGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQ 148 (221)
T ss_pred cCHhHH--HHHHHhcEEEEecccccCCCCcHHHHHHHHHH-hcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHH
Confidence 542210 001 256899999742 122233222100 000000 0 0 001111112349999999
Q ss_pred cccccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 274 KCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 274 ~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
|+.+++++ +.+|.++++|+| ...+.+.+++.++..
T Consensus 149 rv~laral-~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~ 189 (221)
T TIGR02211 149 RVAIARAL-VNQPSLVLADEPTGNLDNNNAKIIFDLMLELNR 189 (221)
T ss_pred HHHHHHHH-hCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH
Confidence 99999999 999999999965 355555566666643
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=7.6e-21 Score=183.79 Aligned_cols=155 Identities=16% Similarity=0.220 Sum_probs=108.5
Q ss_pred CceeeccCc----chhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecc
Q 020346 137 YEPLFCSVE----SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (327)
Q Consensus 137 ~~~~~~s~~----~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~ 211 (327)
++.+.++|+ ...+++++++.+ +|++++|+|+||||||||+++|+| +++|++|+|.++|.++..
T Consensus 4 i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~G------------l~~p~~G~I~~~g~~i~~ 71 (343)
T PRK11153 4 LKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINL------------LERPTSGRVLVDGQDLTA 71 (343)
T ss_pred EEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhC------------CCCCCceEEEECCEECCc
Confidence 466777886 356899999998 999999999999999999999999 899999999999998876
Q ss_pred ccccCCCcceeeEEEEEEEccCCC----eEEeCcccCCc--c-------------ccccCHhHHhhhhHHHHHhcCcccc
Q 020346 212 VSTKSGRGKHTTRHVSLLPLSGGG----YLADTPGFNQP--S-------------LLKVTKQSLAQTFPEIKEMLKANEP 272 (327)
Q Consensus 212 ~s~~~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~--~-------------l~~~~~~~l~~~~~~~~~~LSgGq~ 272 (327)
.+.... +..++.++|+||.+.. ++.|+..+... . ++.+......+.. ...|||||+
T Consensus 72 ~~~~~~--~~~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~---~~~LSgGq~ 146 (343)
T PRK11153 72 LSEKEL--RKARRQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRY---PAQLSGGQK 146 (343)
T ss_pred CCHHHH--HHHhcCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCC---hhhCCHHHH
Confidence 543210 1135679999997532 22232221100 0 0001111111111 234999999
Q ss_pred ccccccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 273 AKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 273 q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
||+.+++++ +.+|.++++|+| .....+.++++++..
T Consensus 147 qRv~lAraL-~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~ 188 (343)
T PRK11153 147 QRVAIARAL-ASNPKVLLCDEATSALDPATTRSILELLKDINR 188 (343)
T ss_pred HHHHHHHHH-HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence 999999999 999999999955 455666677776644
|
|
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.4e-20 Score=170.28 Aligned_cols=148 Identities=14% Similarity=0.158 Sum_probs=102.7
Q ss_pred CceeeccCcc----hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecc
Q 020346 137 YEPLFCSVES----KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (327)
Q Consensus 137 ~~~~~~s~~~----~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~ 211 (327)
++.+.++|++ ..+++++++.+ +|++++|+|+||||||||+++|+| +++|++|+|.++|.++..
T Consensus 3 ~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G------------l~~~~~G~i~~~g~~~~~ 70 (220)
T cd03293 3 VRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAG------------LERPTSGEVLVDGEPVTG 70 (220)
T ss_pred EEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhC------------CCCCCceEEEECCEECcc
Confidence 4567777866 67899999998 999999999999999999999999 889999999999987642
Q ss_pred ccccCCCcceeeEEEEEEEccCCC----eEEeCcccCCccccccC----HhHHhh---------hhHHHHHhcCcccccc
Q 020346 212 VSTKSGRGKHTTRHVSLLPLSGGG----YLADTPGFNQPSLLKVT----KQSLAQ---------TFPEIKEMLKANEPAK 274 (327)
Q Consensus 212 ~s~~~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~~l~~~~----~~~l~~---------~~~~~~~~LSgGq~q~ 274 (327)
....++++||.+.. ++.++..+... ...+. ...... ........|||||+||
T Consensus 71 ----------~~~~i~~v~q~~~~~~~~tv~e~l~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qr 139 (220)
T cd03293 71 ----------PGPDRGYVFQQDALLPWLTVLDNVALGLE-LQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQR 139 (220)
T ss_pred ----------ccCcEEEEecccccccCCCHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHH
Confidence 23468999987432 22222111100 00000 000111 0111123499999999
Q ss_pred ccccccccccCCceEEcccH------HHHHHHHHHHHHHH
Q 020346 275 CSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIR 308 (327)
Q Consensus 275 ~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~ 308 (327)
+.+++++ +.+|.++++|+| ...+.+.++++++.
T Consensus 140 l~la~al-~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~ 178 (220)
T cd03293 140 VALARAL-AVDPDVLLLDEPFSALDALTREQLQEELLDIW 178 (220)
T ss_pred HHHHHHH-HcCCCEEEECCCCCCCCHHHHHHHHHHHHHHH
Confidence 9999999 999999999965 45555556666653
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13538 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.4e-20 Score=168.80 Aligned_cols=151 Identities=17% Similarity=0.194 Sum_probs=106.2
Q ss_pred CceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccccc
Q 020346 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (327)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~ 215 (327)
++.+.++|....+++++++.+ +|++++|+|+||||||||+++|+| +++|++|+|+++|.++...+..
T Consensus 4 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G------------~~~p~~G~v~~~g~~~~~~~~~ 71 (204)
T PRK13538 4 ARNLACERDERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAG------------LARPDAGEVLWQGEPIRRQRDE 71 (204)
T ss_pred EEEEEEEECCEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhC------------CCCCCCcEEEECCEEcccchHH
Confidence 456777777777999999998 999999999999999999999999 8899999999999887643321
Q ss_pred CCCcceeeEEEEEEEccCCC----eEEeCcccCCcc------------ccccCHhHHhhhhHHHHHhcCccccccccccc
Q 020346 216 SGRGKHTTRHVSLLPLSGGG----YLADTPGFNQPS------------LLKVTKQSLAQTFPEIKEMLKANEPAKCSFNN 279 (327)
Q Consensus 216 ~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~~------------l~~~~~~~l~~~~~~~~~~LSgGq~q~~~~~~ 279 (327)
..++++++++.+.. ++.++..+.... ++.+......+. ....||+||+||+.+++
T Consensus 72 ------~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~---~~~~LS~G~~qrl~la~ 142 (204)
T PRK13538 72 ------YHQDLLYLGHQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLAGFEDV---PVRQLSAGQQRRVALAR 142 (204)
T ss_pred ------hhhheEEeCCccccCcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCHHHhhC---ChhhcCHHHHHHHHHHH
Confidence 34568888876421 222222111100 001111111111 12349999999999999
Q ss_pred cccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 280 CLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 280 ~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
++ +.+|.++++|+| ...+.+.++++++..
T Consensus 143 al-~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~ 177 (204)
T PRK13538 143 LW-LTRAPLWILDEPFTAIDKQGVARLEALLAQHAE 177 (204)
T ss_pred HH-hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHH
Confidence 99 999999999965 455566677766643
|
|
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=99.80 E-value=1e-20 Score=184.08 Aligned_cols=149 Identities=15% Similarity=0.229 Sum_probs=104.7
Q ss_pred cCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcce
Q 020346 143 SVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKH 221 (327)
Q Consensus 143 s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~ 221 (327)
.|+...+++++++.+ +|++++|+|+||||||||+++|+| +++|++|+|+++|.++...+.... ..-
T Consensus 2 ~~~~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~G------------l~~p~~G~I~i~G~~i~~~~~~~~-~~~ 68 (363)
T TIGR01186 2 KTGGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNR------------LIEPTAGQIFIDGENIMKQSPVEL-REV 68 (363)
T ss_pred ccCCceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhC------------CCCCCceEEEECCEECCcCCHHHH-HHH
Confidence 355667899999998 999999999999999999999999 999999999999999876553220 000
Q ss_pred eeEEEEEEEccCCC----eEEeCcccCCcc---------------ccccCHhHHhhhhHHHHHhcCcccccccccccccc
Q 020346 222 TTRHVSLLPLSGGG----YLADTPGFNQPS---------------LLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLH 282 (327)
Q Consensus 222 tt~~i~~v~q~~~~----~i~Dtpg~~~~~---------------l~~~~~~~l~~~~~~~~~~LSgGq~q~~~~~~~~h 282 (327)
.++.++|++|.+.. ++.++..+.... ++.+.+....+..|. .|||||+||+.+++++
T Consensus 69 rr~~i~~v~Q~~~l~~~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~---~LSGGq~QRV~lARAL- 144 (363)
T TIGR01186 69 RRKKIGMVFQQFALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPD---ELSGGMQQRVGLARAL- 144 (363)
T ss_pred HhCcEEEEECCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChh---hCCHHHHHHHHHHHHH-
Confidence 15689999997532 333433321100 111111222223333 3999999999999999
Q ss_pred ccCCceEEcccH------HHHHHHHHHHHHHH
Q 020346 283 LGEPGCVVKGDW------ERYQYYFQLLDEIR 308 (327)
Q Consensus 283 ~~ep~~~v~~~~------~r~~~~~~ll~e~~ 308 (327)
+.+|.++++|+| .-.+.+++++.++.
T Consensus 145 ~~~p~iLLlDEP~saLD~~~r~~l~~~l~~l~ 176 (363)
T TIGR01186 145 AAEPDILLMDEAFSALDPLIRDSMQDELKKLQ 176 (363)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence 999999999955 44455555555554
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.9e-20 Score=171.63 Aligned_cols=157 Identities=13% Similarity=0.169 Sum_probs=107.1
Q ss_pred CceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccccc
Q 020346 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (327)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~ 215 (327)
++.+.++|++..+++++++.+ +|++++|+|+||+|||||+++|+| +++|++|+|+++|.++...+..
T Consensus 4 ~~~l~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G------------~~~~~~G~i~~~g~~~~~~~~~ 71 (240)
T PRK09493 4 FKNVSKHFGPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINK------------LEEITSGDLIVDGLKVNDPKVD 71 (240)
T ss_pred EEeEEEEECCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhC------------CCCCCceEEEECCEECCcCChh
Confidence 456777787777999999998 999999999999999999999999 8899999999999987643211
Q ss_pred CCCcceeeEEEEEEEccCCC----eEEeCcccCCccccccCHh-------HHhh------hhHHHHHhcCcccccccccc
Q 020346 216 SGRGKHTTRHVSLLPLSGGG----YLADTPGFNQPSLLKVTKQ-------SLAQ------TFPEIKEMLKANEPAKCSFN 278 (327)
Q Consensus 216 ~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~~l~~~~~~-------~l~~------~~~~~~~~LSgGq~q~~~~~ 278 (327)
....++.++|++|.+.. ++.|+..+........... ++.. ........||+||+||+.|+
T Consensus 72 ---~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la 148 (240)
T PRK09493 72 ---ERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIA 148 (240)
T ss_pred ---HHHHhhceEEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHH
Confidence 01145678999987532 2222222210000000000 0000 01111234999999999999
Q ss_pred ccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 279 NCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 279 ~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
+++ +.+|.++++|+| ...+.+.+++.++..
T Consensus 149 ~al-~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~ 184 (240)
T PRK09493 149 RAL-AVKPKLMLFDEPTSALDPELRHEVLKVMQDLAE 184 (240)
T ss_pred HHH-hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH
Confidence 999 999999999965 355555566766643
|
|
| >TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Probab=99.80 E-value=1e-20 Score=168.71 Aligned_cols=150 Identities=17% Similarity=0.212 Sum_probs=105.3
Q ss_pred CceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccccc
Q 020346 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (327)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~ 215 (327)
++.+.++|++..+++++++.+ +|++++|+|+||+|||||+++|+| +++|++|+|+++|.++...+..
T Consensus 3 ~~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G------------~~~~~~G~i~~~g~~~~~~~~~ 70 (198)
T TIGR01189 3 ARNLACSRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAG------------LLRPDSGEVRWNGTALAEQRDE 70 (198)
T ss_pred EEEEEEEECCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhC------------CCCCCccEEEECCEEcccchHH
Confidence 356677777778999999998 999999999999999999999999 8899999999999987654321
Q ss_pred CCCcceeeEEEEEEEccCCC----eEEeCcccCCcc-----------ccccCHhHHhhhhHHHHHhcCcccccccccccc
Q 020346 216 SGRGKHTTRHVSLLPLSGGG----YLADTPGFNQPS-----------LLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNC 280 (327)
Q Consensus 216 ~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~~-----------l~~~~~~~l~~~~~~~~~~LSgGq~q~~~~~~~ 280 (327)
.++.++|++|.... ++.|+..+.... ++.+......+. ....||+||+||+.++++
T Consensus 71 ------~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---~~~~LS~G~~qrv~la~a 141 (198)
T TIGR01189 71 ------PHRNILYLGHLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFEDL---PAAQLSAGQQRRLALARL 141 (198)
T ss_pred ------hhhheEEeccCcccccCCcHHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHhcC---ChhhcCHHHHHHHHHHHH
Confidence 34678888886421 222222211000 000111111111 123499999999999999
Q ss_pred ccccCCceEEcccH------HHHHHHHHHHHHHH
Q 020346 281 LHLGEPGCVVKGDW------ERYQYYFQLLDEIR 308 (327)
Q Consensus 281 ~h~~ep~~~v~~~~------~r~~~~~~ll~e~~ 308 (327)
+ +.+|.++|+|+| ...+.+.+++.++.
T Consensus 142 l-~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~ 174 (198)
T TIGR01189 142 W-LSRAPLWILDEPTTALDKAGVALLAGLLRAHL 174 (198)
T ss_pred H-hcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHH
Confidence 9 999999999965 35555556666554
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. |
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=99.80 E-value=8.5e-21 Score=170.68 Aligned_cols=155 Identities=16% Similarity=0.211 Sum_probs=106.0
Q ss_pred CceeeccCcc-hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccc
Q 020346 137 YEPLFCSVES-KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (327)
Q Consensus 137 ~~~~~~s~~~-~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~ 214 (327)
++.+.++|.+ +.+++++++.+ +|++++|+|+||||||||+++|+| +++|++|+|.++|.++...+.
T Consensus 3 ~~~l~~~~~~~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G------------~~~~~~G~i~~~g~~i~~~~~ 70 (214)
T cd03292 3 FINVTKTYPNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYK------------EELPTSGTIRVNGQDVSDLRG 70 (214)
T ss_pred EEEEEEEeCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhc------------CCCCCceEEEECCEEcccCCH
Confidence 4567777754 57899999998 999999999999999999999999 889999999999998765431
Q ss_pred cCCCcceeeEEEEEEEccCCC----eEEeCcccCCc--c-------------ccccCHhHHhhhhHHHHHhcCccccccc
Q 020346 215 KSGRGKHTTRHVSLLPLSGGG----YLADTPGFNQP--S-------------LLKVTKQSLAQTFPEIKEMLKANEPAKC 275 (327)
Q Consensus 215 ~~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~--~-------------l~~~~~~~l~~~~~~~~~~LSgGq~q~~ 275 (327)
... ...++.+++++|.+.. ++.|+..+... . ++.+......+. ....||+||+||+
T Consensus 71 ~~~--~~~~~~i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---~~~~LS~G~~qrv 145 (214)
T cd03292 71 RAI--PYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRA---LPAELSGGEQQRV 145 (214)
T ss_pred HHH--HHHHHheEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhC---ChhhcCHHHHHHH
Confidence 100 0134679999997532 22222211100 0 000011111111 1234999999999
Q ss_pred cccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 276 SFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 276 ~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
.+++++ +.+|+++++|+| ...+.+.++++++..
T Consensus 146 ~laral-~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~ 184 (214)
T cd03292 146 AIARAI-VNSPTILIADEPTGNLDPDTTWEIMNLLKKINK 184 (214)
T ss_pred HHHHHH-HcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH
Confidence 999999 999999999965 455566666666643
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >TIGR02857 CydD thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.1e-20 Score=189.95 Aligned_cols=143 Identities=17% Similarity=0.299 Sum_probs=108.9
Q ss_pred hcCCceeeccCcc--hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeec
Q 020346 134 TWGYEPLFCSVES--KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (327)
Q Consensus 134 ~~~~~~~~~s~~~--~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~ 210 (327)
.+.++.+.++|.+ +++++++++.+ +|++++|+|+||+|||||+|+|+| +++|++|+|.++|.++.
T Consensus 320 ~i~~~~v~f~y~~~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g------------~~~~~~G~I~~~g~~i~ 387 (529)
T TIGR02857 320 SLEFSGLSVAYPGRRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLG------------FVDPTEGSIAVNGVPLA 387 (529)
T ss_pred eEEEEEEEEECCCCCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhc------------CCCCCCcEEEECCEehh
Confidence 4667889999965 46899999998 999999999999999999999999 99999999999999998
Q ss_pred cccccCCCcceeeEEEEEEEccC---CCeEEeCcccCCccccc---------cCHhHHhhhhH--------HHHHhcCcc
Q 020346 211 EVSTKSGRGKHTTRHVSLLPLSG---GGYLADTPGFNQPSLLK---------VTKQSLAQTFP--------EIKEMLKAN 270 (327)
Q Consensus 211 ~~s~~~~~g~~tt~~i~~v~q~~---~~~i~Dtpg~~~~~l~~---------~~~~~l~~~~~--------~~~~~LSgG 270 (327)
+++... .++++++++|++ ++++.|+..+..+.... ....+.-..+| +-...||||
T Consensus 388 ~~~~~~-----lr~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgG 462 (529)
T TIGR02857 388 DADADS-----WRDQIAWVPQHPFLFAGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGG 462 (529)
T ss_pred hCCHHH-----HHhheEEEcCCCcccCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHH
Confidence 887544 678899999985 44555554443221110 01111111111 111249999
Q ss_pred ccccccccccccccCCceEEcccH
Q 020346 271 EPAKCSFNNCLHLGEPGCVVKGDW 294 (327)
Q Consensus 271 q~q~~~~~~~~h~~ep~~~v~~~~ 294 (327)
|+||+++++++ +.+|+++++||+
T Consensus 463 q~qri~laRal-~~~~~ililDE~ 485 (529)
T TIGR02857 463 QAQRLALARAF-LRDAPLLLLDEP 485 (529)
T ss_pred HHHHHHHHHHH-hcCCCEEEEeCc
Confidence 99999999999 999999999965
|
Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD |
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.4e-20 Score=197.06 Aligned_cols=143 Identities=17% Similarity=0.305 Sum_probs=110.2
Q ss_pred hcCCceeeccCcc--hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeec
Q 020346 134 TWGYEPLFCSVES--KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (327)
Q Consensus 134 ~~~~~~~~~s~~~--~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~ 210 (327)
.+.++.++++|.+ +.+++++++.+ +|++++|+|+||||||||+++|+| +|+|++|+|.+||.++.
T Consensus 463 ~I~~~~vsf~Y~~~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~g------------l~~p~~G~I~idg~~l~ 530 (694)
T TIGR03375 463 EIEFRNVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLG------------LYQPTEGSVLLDGVDIR 530 (694)
T ss_pred eEEEEEEEEEeCCCCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhc------------CCCCCCceEEECCEEhh
Confidence 3567889999963 46899999998 999999999999999999999999 99999999999999999
Q ss_pred cccccCCCcceeeEEEEEEEccC---CCeEEeCcccCCccccc---------cCHhHHhhhhHH--------HHHhcCcc
Q 020346 211 EVSTKSGRGKHTTRHVSLLPLSG---GGYLADTPGFNQPSLLK---------VTKQSLAQTFPE--------IKEMLKAN 270 (327)
Q Consensus 211 ~~s~~~~~g~~tt~~i~~v~q~~---~~~i~Dtpg~~~~~l~~---------~~~~~l~~~~~~--------~~~~LSgG 270 (327)
+++... .++.++++||++ ++++.|+..+..+.... ....+.-..+|+ -...||||
T Consensus 531 ~~~~~~-----lr~~i~~v~Q~~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgG 605 (694)
T TIGR03375 531 QIDPAD-----LRRNIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGG 605 (694)
T ss_pred hCCHHH-----HHhccEEECCChhhhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHH
Confidence 887654 788999999985 44566666555432111 001111111111 01239999
Q ss_pred ccccccccccccccCCceEEcccH
Q 020346 271 EPAKCSFNNCLHLGEPGCVVKGDW 294 (327)
Q Consensus 271 q~q~~~~~~~~h~~ep~~~v~~~~ 294 (327)
|+||+++++++ +.+|.++++||+
T Consensus 606 QrQRlalARal-l~~p~iliLDE~ 628 (694)
T TIGR03375 606 QRQAVALARAL-LRDPPILLLDEP 628 (694)
T ss_pred HHHHHHHHHHH-hcCCCEEEEeCC
Confidence 99999999999 899999999965
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.1e-20 Score=172.73 Aligned_cols=159 Identities=18% Similarity=0.197 Sum_probs=106.6
Q ss_pred CCceeeccCcc----hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeec
Q 020346 136 GYEPLFCSVES----KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (327)
Q Consensus 136 ~~~~~~~s~~~----~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~ 210 (327)
.++.+.++|.+ ..+++++++.+ +|++++|+|+||||||||+++|+| +++|++|+|+++|.++.
T Consensus 7 ~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G------------l~~~~~G~i~~~g~~i~ 74 (233)
T PRK11629 7 QCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGG------------LDTPTSGDVIFNGQPMS 74 (233)
T ss_pred EEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhc------------CCCCCceEEEECCEEcC
Confidence 34567777753 46899999998 999999999999999999999999 88999999999999886
Q ss_pred cccccCCCcceeeEEEEEEEccCCC----eEEeCcccCCccccccCH----hHHh---------hhhHHHHHhcCccccc
Q 020346 211 EVSTKSGRGKHTTRHVSLLPLSGGG----YLADTPGFNQPSLLKVTK----QSLA---------QTFPEIKEMLKANEPA 273 (327)
Q Consensus 211 ~~s~~~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~~l~~~~~----~~l~---------~~~~~~~~~LSgGq~q 273 (327)
..+.... .....+.++|++|++.. ++.++..+... ...... ..+. .........|||||+|
T Consensus 75 ~~~~~~~-~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~-~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~q 152 (233)
T PRK11629 75 KLSSAAK-AELRNQKLGFIYQFHHLLPDFTALENVAMPLL-IGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQ 152 (233)
T ss_pred cCCHHHH-HHHHhccEEEEecCcccCCCCCHHHHHHHHHH-hcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHH
Confidence 6542210 00012568999997421 22232221000 000000 0000 1111112349999999
Q ss_pred cccccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 274 KCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 274 ~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
|+.+++++ +.+|.++++|+| ...+.+.++++++..
T Consensus 153 rl~la~al-~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~ 193 (233)
T PRK11629 153 RVAIARAL-VNNPRLVLADEPTGNLDARNADSIFQLLGELNR 193 (233)
T ss_pred HHHHHHHH-hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Confidence 99999999 899999999955 455666677776643
|
|
| >PRK13540 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=9.4e-21 Score=169.31 Aligned_cols=154 Identities=14% Similarity=0.113 Sum_probs=106.6
Q ss_pred CceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccccc
Q 020346 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (327)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~ 215 (327)
++.+.++|.+..+++++++.+ +|++++|+|+||+|||||+++|+| +++|++|+|+++|.++.....
T Consensus 4 ~~~l~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G------------~~~~~~G~v~~~g~~~~~~~~- 70 (200)
T PRK13540 4 VIELDFDYHDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAG------------LLNPEKGEILFERQSIKKDLC- 70 (200)
T ss_pred EEEEEEEeCCeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhc------------CCCCCCeeEEECCCccccCHH-
Confidence 466777887778999999998 999999999999999999999999 889999999999987753211
Q ss_pred CCCcceeeEEEEEEEccCC----CeEEeCcccCC-ccccccCHhHHhh------hhHHHHHhcCcccccccccccccccc
Q 020346 216 SGRGKHTTRHVSLLPLSGG----GYLADTPGFNQ-PSLLKVTKQSLAQ------TFPEIKEMLKANEPAKCSFNNCLHLG 284 (327)
Q Consensus 216 ~~~g~~tt~~i~~v~q~~~----~~i~Dtpg~~~-~~l~~~~~~~l~~------~~~~~~~~LSgGq~q~~~~~~~~h~~ 284 (327)
..++.++|++|... .++.|+..+.. .........++.. ........||+||+||+++++++ +.
T Consensus 71 -----~~~~~i~~~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral-~~ 144 (200)
T PRK13540 71 -----TYQKQLCFVGHRSGINPYLTLRENCLYDIHFSPGAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLW-MS 144 (200)
T ss_pred -----HHHhheEEeccccccCcCCCHHHHHHHHHhcCcchHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHH-hc
Confidence 14567899998642 22333322210 0000000011111 00111234999999999999999 99
Q ss_pred CCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 285 EPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 285 ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
+|.++++|+| ...+...++++++..
T Consensus 145 ~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~ 175 (200)
T PRK13540 145 KAKLWLLDEPLVALDELSLLTIITKIQEHRA 175 (200)
T ss_pred CCCEEEEeCCCcccCHHHHHHHHHHHHHHHH
Confidence 9999999965 455566666666543
|
|
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.1e-20 Score=185.74 Aligned_cols=155 Identities=21% Similarity=0.275 Sum_probs=118.9
Q ss_pred CceeeccCcch-hhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccc
Q 020346 137 YEPLFCSVESK-LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (327)
Q Consensus 137 ~~~~~~s~~~~-~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~ 214 (327)
.+.+.+.|.+. +++.++++++ +|+.++|||+||||||||+|+|+| +.+|++|+|.+||++..+++.
T Consensus 323 ~~~l~~~y~~g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G------------~~~~~~G~I~vng~~l~~l~~ 390 (559)
T COG4988 323 LENLSFRYPDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLG------------FLAPTQGEIRVNGIDLRDLSP 390 (559)
T ss_pred ecceEEecCCCCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhC------------cCCCCCceEEECCccccccCH
Confidence 34788888776 8999999998 899999999999999999999999 999999999999999999987
Q ss_pred cCCCcceeeEEEEEEEccC---CCeEEeCcccCCccccccCHh------HHhhhhH----------HHHHhcCccccccc
Q 020346 215 KSGRGKHTTRHVSLLPLSG---GGYLADTPGFNQPSLLKVTKQ------SLAQTFP----------EIKEMLKANEPAKC 275 (327)
Q Consensus 215 ~~~~g~~tt~~i~~v~q~~---~~~i~Dtpg~~~~~l~~~~~~------~l~~~~~----------~~~~~LSgGq~q~~ 275 (327)
.. ++++++|++|.+ .+++.|+..+..+...+-+.. .+.+..+ |--..|||||+||+
T Consensus 391 ~~-----~~k~i~~v~Q~p~lf~gTireNi~l~~~~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRl 465 (559)
T COG4988 391 EA-----WRKQISWVSQNPYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRL 465 (559)
T ss_pred HH-----HHhHeeeeCCCCccccccHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHH
Confidence 65 789999999986 456667777666543221111 1111111 11123999999999
Q ss_pred cccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 276 SFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 276 ~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
++++++ ++.+.+.+.||| +.-++..+.+.++.+
T Consensus 466 aLARAl-l~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~ 504 (559)
T COG4988 466 ALARAL-LSPASLLLLDEPTAHLDAETEQIILQALQELAK 504 (559)
T ss_pred HHHHHh-cCCCCEEEecCCccCCCHhHHHHHHHHHHHHHh
Confidence 999999 888999999965 455555555555543
|
|
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.5e-20 Score=197.31 Aligned_cols=143 Identities=15% Similarity=0.239 Sum_probs=109.6
Q ss_pred hcCCceeeccCc-chhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecc
Q 020346 134 TWGYEPLFCSVE-SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (327)
Q Consensus 134 ~~~~~~~~~s~~-~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~ 211 (327)
.+.++.++++|. ++.+++++++.+ +|++++|+|+||||||||+++|+| +++|++|+|.+||.++.+
T Consensus 473 ~I~~~~vsf~y~~~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~g------------l~~p~~G~I~idg~~i~~ 540 (708)
T TIGR01193 473 DIVINDVSYSYGYGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVG------------FFQARSGEILLNGFSLKD 540 (708)
T ss_pred cEEEEEEEEEcCCCCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhc------------cCCCCCcEEEECCEEHHH
Confidence 356788999996 467899999998 899999999999999999999999 999999999999999998
Q ss_pred ccccCCCcceeeEEEEEEEccC---CCeEEeCcccC-CccccccCHh------HHh---hhhHH-----H---HHhcCcc
Q 020346 212 VSTKSGRGKHTTRHVSLLPLSG---GGYLADTPGFN-QPSLLKVTKQ------SLA---QTFPE-----I---KEMLKAN 270 (327)
Q Consensus 212 ~s~~~~~g~~tt~~i~~v~q~~---~~~i~Dtpg~~-~~~l~~~~~~------~l~---~~~~~-----~---~~~LSgG 270 (327)
++... .+++++++||++ ++++.|+..+. .+....-+.. .+. ..+|. + ...||||
T Consensus 541 ~~~~~-----lr~~i~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgG 615 (708)
T TIGR01193 541 IDRHT-----LRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGG 615 (708)
T ss_pred cCHHH-----HHHheEEEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHH
Confidence 87654 788999999985 44555665543 1211100000 010 11111 0 1239999
Q ss_pred ccccccccccccccCCceEEcccH
Q 020346 271 EPAKCSFNNCLHLGEPGCVVKGDW 294 (327)
Q Consensus 271 q~q~~~~~~~~h~~ep~~~v~~~~ 294 (327)
|+||+++++++ +.+|.++++||+
T Consensus 616 QrQRialARal-l~~p~iliLDE~ 638 (708)
T TIGR01193 616 QKQRIALARAL-LTDSKVLILDES 638 (708)
T ss_pred HHHHHHHHHHH-hhCCCEEEEeCc
Confidence 99999999999 999999999965
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=1e-20 Score=177.75 Aligned_cols=153 Identities=14% Similarity=0.183 Sum_probs=108.1
Q ss_pred CCceeeccCcc---hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecc
Q 020346 136 GYEPLFCSVES---KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (327)
Q Consensus 136 ~~~~~~~s~~~---~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~ 211 (327)
.++.+.++|.+ ..+++++++.+ +|++++|+|+||||||||+++|+| +++|++|+|+++|.++..
T Consensus 6 ~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G------------l~~p~~G~i~~~g~~i~~ 73 (279)
T PRK13650 6 EVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDG------------LLEAESGQIIIDGDLLTE 73 (279)
T ss_pred EEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhc------------CCCCCCcEEEECCEECCc
Confidence 45677788853 35899999998 999999999999999999999999 999999999999998865
Q ss_pred ccccCCCcceeeEEEEEEEccCC-----CeEEeCcccCCcc---------------ccccCHhHHhhhhHHHHHhcCccc
Q 020346 212 VSTKSGRGKHTTRHVSLLPLSGG-----GYLADTPGFNQPS---------------LLKVTKQSLAQTFPEIKEMLKANE 271 (327)
Q Consensus 212 ~s~~~~~g~~tt~~i~~v~q~~~-----~~i~Dtpg~~~~~---------------l~~~~~~~l~~~~~~~~~~LSgGq 271 (327)
.+... .++.++|++|++. .++.|+..+.... ++.+......+.. ...|||||
T Consensus 74 ~~~~~-----~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~---~~~LSgGq 145 (279)
T PRK13650 74 ENVWD-----IRHKIGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKERE---PARLSGGQ 145 (279)
T ss_pred CcHHH-----HHhhceEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCC---cccCCHHH
Confidence 43221 4567999999752 1223333221100 0001111111111 23499999
Q ss_pred cccccccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 272 PAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 272 ~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
+||+.+++|+ +.+|.++|+|+| ...+.+.+++.++..
T Consensus 146 ~qrv~lAral-~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~ 188 (279)
T PRK13650 146 KQRVAIAGAV-AMRPKIIILDEATSMLDPEGRLELIKTIKGIRD 188 (279)
T ss_pred HHHHHHHHHH-HcCCCEEEEECCcccCCHHHHHHHHHHHHHHHH
Confidence 9999999999 999999999955 455566666766654
|
|
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.4e-20 Score=172.28 Aligned_cols=152 Identities=12% Similarity=0.177 Sum_probs=105.3
Q ss_pred CceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccccc
Q 020346 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (327)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~ 215 (327)
++.+.++|.+..+++++++.+ +|++++|+|+||||||||+++|+| +++|++|+|+++|.++...+..
T Consensus 4 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G------------~~~p~~G~i~~~g~~i~~~~~~ 71 (236)
T TIGR03864 4 VAGLSFAYGARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTR------------LYVAQEGQISVAGHDLRRAPRA 71 (236)
T ss_pred EEeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhC------------CcCCCceEEEECCEEcccCChh
Confidence 456677777777999999998 999999999999999999999999 8899999999999887654321
Q ss_pred CCCcceeeEEEEEEEccCCC----eEEeCcccCCccccccCH----hHHhhhh---------HHHHHhcCcccccccccc
Q 020346 216 SGRGKHTTRHVSLLPLSGGG----YLADTPGFNQPSLLKVTK----QSLAQTF---------PEIKEMLKANEPAKCSFN 278 (327)
Q Consensus 216 ~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~~l~~~~~----~~l~~~~---------~~~~~~LSgGq~q~~~~~ 278 (327)
..+.+++++|.+.. ++.++..+... ...... ....+.. ......|||||+||+.++
T Consensus 72 ------~~~~i~~~~q~~~~~~~~t~~~~l~~~~~-~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la 144 (236)
T TIGR03864 72 ------ALARLGVVFQQPTLDLDLSVRQNLRYHAA-LHGLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIA 144 (236)
T ss_pred ------hhhhEEEeCCCCCCcccCcHHHHHHHHHH-hcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHH
Confidence 23478999997532 22222211100 000000 0001111 111234999999999999
Q ss_pred ccccccCCceEEcccH------HHHHHHHHHHHHHH
Q 020346 279 NCLHLGEPGCVVKGDW------ERYQYYFQLLDEIR 308 (327)
Q Consensus 279 ~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~ 308 (327)
+++ +.+|.++++|+| ...+.+.+++.++.
T Consensus 145 ral-~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~ 179 (236)
T TIGR03864 145 RAL-LHRPALLLLDEPTVGLDPASRAAIVAHVRALC 179 (236)
T ss_pred HHH-hcCCCEEEEcCCccCCCHHHHHHHHHHHHHHH
Confidence 999 999999999965 45555556666664
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.1e-20 Score=162.12 Aligned_cols=132 Identities=20% Similarity=0.348 Sum_probs=100.6
Q ss_pred CceeeccCcch--hhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccc
Q 020346 137 YEPLFCSVESK--LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (327)
Q Consensus 137 ~~~~~~s~~~~--~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s 213 (327)
++.+.++|.+. .+++++++.+ +|+.++|+|+||+|||||+++|+| +++|++|+|+++|.++...+
T Consensus 3 ~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G------------~~~~~~G~i~~~g~~~~~~~ 70 (171)
T cd03228 3 FKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLR------------LYDPTSGEILIDGVDLRDLD 70 (171)
T ss_pred EEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHc------------CCCCCCCEEEECCEEhhhcC
Confidence 45666777654 7899999998 999999999999999999999999 89999999999999876544
Q ss_pred ccCCCcceeeEEEEEEEccCCCeEEeCcccCCccccccCHhHHhhhhHHHHHhcCccccccccccccccccCCceEEccc
Q 020346 214 TKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGD 293 (327)
Q Consensus 214 ~~~~~g~~tt~~i~~v~q~~~~~i~Dtpg~~~~~l~~~~~~~l~~~~~~~~~~LSgGq~q~~~~~~~~h~~ep~~~v~~~ 293 (327)
... .++.+++++|.+. + +.....+ .+ ||+||+||+.+++++ +.+|+++++|+
T Consensus 71 ~~~-----~~~~i~~~~~~~~--~-----~~~t~~e------------~l---LS~G~~~rl~la~al-~~~p~llllDE 122 (171)
T cd03228 71 LES-----LRKNIAYVPQDPF--L-----FSGTIRE------------NI---LSGGQRQRIAIARAL-LRDPPILILDE 122 (171)
T ss_pred HHH-----HHhhEEEEcCCch--h-----ccchHHH------------Hh---hCHHHHHHHHHHHHH-hcCCCEEEEEC
Confidence 222 3456888888531 1 1111111 11 999999999999999 99999999996
Q ss_pred H------HHHHHHHHHHHHHH
Q 020346 294 W------ERYQYYFQLLDEIR 308 (327)
Q Consensus 294 ~------~r~~~~~~ll~e~~ 308 (327)
| ...+.+.+++.++.
T Consensus 123 P~~gLD~~~~~~l~~~l~~~~ 143 (171)
T cd03228 123 ATSALDPETEALILEALRALA 143 (171)
T ss_pred CCcCCCHHHHHHHHHHHHHhc
Confidence 5 34555556666553
|
They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.1e-20 Score=171.26 Aligned_cols=157 Identities=13% Similarity=0.237 Sum_probs=105.9
Q ss_pred CceeeccC-cchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccc
Q 020346 137 YEPLFCSV-ESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (327)
Q Consensus 137 ~~~~~~s~-~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~ 214 (327)
++.+.++| ....+++++++.+ +|++++|+|+||||||||+++|+| +++|++|+|+++|.++...+.
T Consensus 4 ~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G------------~~~~~~G~i~~~g~~i~~~~~ 71 (222)
T PRK10908 4 FEHVSKAYLGGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICG------------IERPSAGKIWFSGHDITRLKN 71 (222)
T ss_pred EEeeEEEecCCCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhC------------CCCCCceEEEECCEEcccCCh
Confidence 45666777 5567899999998 999999999999999999999999 889999999999998765432
Q ss_pred cCCCcceeeEEEEEEEccCCC----eEEeCcccCCccccccCHh-------HHhhh------hHHHHHhcCccccccccc
Q 020346 215 KSGRGKHTTRHVSLLPLSGGG----YLADTPGFNQPSLLKVTKQ-------SLAQT------FPEIKEMLKANEPAKCSF 277 (327)
Q Consensus 215 ~~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~~l~~~~~~-------~l~~~------~~~~~~~LSgGq~q~~~~ 277 (327)
.. .+..++.++|++|.+.. ++.|+..+... ....... ++.+. .......||+||+||+.+
T Consensus 72 ~~--~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~l 148 (222)
T PRK10908 72 RE--VPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLI-IAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGI 148 (222)
T ss_pred hH--HHHHHhheEEEecCccccccccHHHHHHhHHH-hcCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHH
Confidence 11 00134678999997532 22222211100 0001100 00000 011123499999999999
Q ss_pred cccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 278 NNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 278 ~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
++++ +.+|.++++|+| ...+.+.+++.++..
T Consensus 149 aral-~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~ 185 (222)
T PRK10908 149 ARAV-VNKPAVLLADEPTGNLDDALSEGILRLFEEFNR 185 (222)
T ss_pred HHHH-HcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH
Confidence 9999 999999999965 345556666666643
|
|
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.2e-20 Score=192.26 Aligned_cols=141 Identities=13% Similarity=0.225 Sum_probs=107.9
Q ss_pred cCCceeeccCcc-hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccc
Q 020346 135 WGYEPLFCSVES-KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV 212 (327)
Q Consensus 135 ~~~~~~~~s~~~-~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~ 212 (327)
+.++.+.++|.+ +.+++++++.+ +|+.++|+|+||+|||||+++|+| +++|++|+|.+||.++..+
T Consensus 341 i~~~~v~f~y~~~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~g------------l~~p~~G~I~idg~~i~~~ 408 (592)
T PRK10790 341 IDIDNVSFAYRDDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMG------------YYPLTEGEIRLDGRPLSSL 408 (592)
T ss_pred EEEEEEEEEeCCCCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhc------------ccCCCCceEEECCEEhhhC
Confidence 567888888864 56899999998 999999999999999999999999 9999999999999999888
Q ss_pred cccCCCcceeeEEEEEEEccC---CCeEEeCcccCCccccccCH---------hHHhhhhHH--------HHHhcCcccc
Q 020346 213 STKSGRGKHTTRHVSLLPLSG---GGYLADTPGFNQPSLLKVTK---------QSLAQTFPE--------IKEMLKANEP 272 (327)
Q Consensus 213 s~~~~~g~~tt~~i~~v~q~~---~~~i~Dtpg~~~~~l~~~~~---------~~l~~~~~~--------~~~~LSgGq~ 272 (327)
+... .+++++++||++ ++++.|+..+... ..+-+. .+.-...|+ -...|||||+
T Consensus 409 ~~~~-----l~~~i~~v~Q~~~lF~~Ti~~NI~~~~~-~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqr 482 (592)
T PRK10790 409 SHSV-----LRQGVAMVQQDPVVLADTFLANVTLGRD-ISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQK 482 (592)
T ss_pred CHHH-----HHhheEEEccCCccccchHHHHHHhCCC-CCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHH
Confidence 7654 788999999985 3445555544431 111011 111111110 0123999999
Q ss_pred ccccccccccccCCceEEcccH
Q 020346 273 AKCSFNNCLHLGEPGCVVKGDW 294 (327)
Q Consensus 273 q~~~~~~~~h~~ep~~~v~~~~ 294 (327)
||+++++++ +.+|.++++|||
T Consensus 483 QRialARaL-l~~~~illlDEp 503 (592)
T PRK10790 483 QLLALARVL-VQTPQILILDEA 503 (592)
T ss_pred HHHHHHHHH-HhCCCEEEEeCC
Confidence 999999999 999999999965
|
|
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.5e-20 Score=169.35 Aligned_cols=157 Identities=15% Similarity=0.226 Sum_probs=107.5
Q ss_pred CceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccc-----cccccceeecceeec
Q 020346 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWF-----EPILGSKWFEDQRVG 210 (327)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~-----~p~~G~i~~~g~~v~ 210 (327)
++.+.++|++..+++++++.+ +|++++|+|+||||||||+++|+| ++ +|++|+|+++|.++.
T Consensus 3 ~~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G------------~~~~~~~~~~~G~i~~~g~~~~ 70 (227)
T cd03260 3 LRDLNVYYGDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNR------------LNDLIPGAPDEGEVLLDGKDIY 70 (227)
T ss_pred EEEEEEEcCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHh------------hcccccCCCCCeEEEECCEEhh
Confidence 456778887778999999998 999999999999999999999999 77 899999999999876
Q ss_pred cccccCCCcceeeEEEEEEEccCCCe---EEeCcccCCcc--ccc---c--CHhHHhh------hhHHH--HHhcCcccc
Q 020346 211 EVSTKSGRGKHTTRHVSLLPLSGGGY---LADTPGFNQPS--LLK---V--TKQSLAQ------TFPEI--KEMLKANEP 272 (327)
Q Consensus 211 ~~s~~~~~g~~tt~~i~~v~q~~~~~---i~Dtpg~~~~~--l~~---~--~~~~l~~------~~~~~--~~~LSgGq~ 272 (327)
..+.. ....+++++|++|++..+ +.|+..+.... ... . ...++.+ ..... ...|||||+
T Consensus 71 ~~~~~---~~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~ 147 (227)
T cd03260 71 DLDVD---VLELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQ 147 (227)
T ss_pred hcchH---HHHHHhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHH
Confidence 54310 011356799999975332 22222111000 000 0 0001111 11111 145999999
Q ss_pred ccccccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 273 AKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 273 q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
||+++++++ +.+|.++++|+| ...+...+++.++..
T Consensus 148 qrv~la~al-~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~ 189 (227)
T cd03260 148 QRLCLARAL-ANEPEVLLLDEPTSALDPISTAKIEELIAELKK 189 (227)
T ss_pred HHHHHHHHH-hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhh
Confidence 999999999 899999999965 455556666666644
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=99.79 E-value=1e-20 Score=169.90 Aligned_cols=150 Identities=16% Similarity=0.239 Sum_probs=103.7
Q ss_pred CceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccccc
Q 020346 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (327)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~ 215 (327)
++.+.++|.+..+++++++.+ +|++++|+|+||||||||+++|+| +++|++|+|+++|.++.. .
T Consensus 3 ~~~l~~~~~~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G------------~~~~~~G~i~~~g~~~~~---~ 67 (210)
T cd03269 3 VENVTKRFGRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILG------------IILPDSGEVLFDGKPLDI---A 67 (210)
T ss_pred EEEEEEEECCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhC------------CCCCCceEEEECCCchhH---H
Confidence 456677777777899999998 999999999999999999999999 889999999999987643 1
Q ss_pred CCCcceeeEEEEEEEccCCC----eEEeCcccCCccccccC----HhH---------HhhhhHHHHHhcCcccccccccc
Q 020346 216 SGRGKHTTRHVSLLPLSGGG----YLADTPGFNQPSLLKVT----KQS---------LAQTFPEIKEMLKANEPAKCSFN 278 (327)
Q Consensus 216 ~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~~l~~~~----~~~---------l~~~~~~~~~~LSgGq~q~~~~~ 278 (327)
.+..+++++|.+.. ++.|+..+... ..... ... +..........||+||+||+.|+
T Consensus 68 ------~~~~i~~~~q~~~~~~~~tv~e~l~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la 140 (210)
T cd03269 68 ------ARNRIGYLPEERGLYPKMKVIDQLVYLAQ-LKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFI 140 (210)
T ss_pred ------HHccEEEeccCCcCCcCCcHHHHHHHHHH-HcCCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHH
Confidence 34578999987522 22222111000 00000 000 00001111234999999999999
Q ss_pred ccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 279 NCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 279 ~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
+++ +.+|.++++|+| ...+.+.++++++..
T Consensus 141 ~al-~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~ 176 (210)
T cd03269 141 AAV-IHDPELLILDEPFSGLDPVNVELLKDVIRELAR 176 (210)
T ss_pred HHH-hcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHH
Confidence 999 999999999965 355555566666543
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=3e-20 Score=171.19 Aligned_cols=161 Identities=14% Similarity=0.145 Sum_probs=107.3
Q ss_pred CCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccc
Q 020346 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (327)
Q Consensus 136 ~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~ 214 (327)
.++.+.++|++..+++++++.+ +|++++|+|+||+|||||+++|+| +++|++|+|.++|.++...+.
T Consensus 5 ~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G------------~~~~~~G~i~~~g~~~~~~~~ 72 (250)
T PRK11264 5 EVKNLVKKFHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINL------------LEQPEAGTIRVGDITIDTARS 72 (250)
T ss_pred EEeceEEEECCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhc------------CCCCCCeEEEECCEEcccccc
Confidence 3566777887778999999998 999999999999999999999999 889999999999998754321
Q ss_pred cC---CCcceeeEEEEEEEccCCC----eEEeCcccCCccccccCHh----HHhhh---------hHHHHHhcCcccccc
Q 020346 215 KS---GRGKHTTRHVSLLPLSGGG----YLADTPGFNQPSLLKVTKQ----SLAQT---------FPEIKEMLKANEPAK 274 (327)
Q Consensus 215 ~~---~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~~l~~~~~~----~l~~~---------~~~~~~~LSgGq~q~ 274 (327)
.. ......++.++++||.+.. ++.|+..+........... ..... .......|||||+||
T Consensus 73 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~qr 152 (250)
T PRK11264 73 LSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQR 152 (250)
T ss_pred ccchhhHHHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHHH
Confidence 00 0001134578999997522 2223322110000000000 00000 011123499999999
Q ss_pred ccccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 275 CSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 275 ~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
+.+++++ +.+|.++|+|+| ...+...++++++..
T Consensus 153 v~la~al-~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~ 192 (250)
T PRK11264 153 VAIARAL-AMRPEVILFDEPTSALDPELVGEVLNTIRQLAQ 192 (250)
T ss_pred HHHHHHH-hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh
Confidence 9999999 899999999965 345555566666643
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.8e-20 Score=200.29 Aligned_cols=156 Identities=19% Similarity=0.321 Sum_probs=120.2
Q ss_pred hcCCceeeccCcch---hhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceee
Q 020346 134 TWGYEPLFCSVESK---LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRV 209 (327)
Q Consensus 134 ~~~~~~~~~s~~~~---~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v 209 (327)
.+.|+++.|+|..+ .+++++++.+ +|++++|||+|||||||++++|.+ +|+|++|+|++||.++
T Consensus 350 ~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~R------------fydP~~G~V~idG~di 417 (1228)
T KOG0055|consen 350 EIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLAR------------FYDPTSGEVLIDGEDI 417 (1228)
T ss_pred ceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHH------------hcCCCCceEEEcCccc
Confidence 36789999999765 5889999998 899999999999999999999999 9999999999999999
Q ss_pred ccccccCCCcceeeEEEEEEEccC---CCeEEeCcccCCccccccCHhH---Hhh------hhHHHH--------HhcCc
Q 020346 210 GEVSTKSGRGKHTTRHVSLLPLSG---GGYLADTPGFNQPSLLKVTKQS---LAQ------TFPEIK--------EMLKA 269 (327)
Q Consensus 210 ~~~s~~~~~g~~tt~~i~~v~q~~---~~~i~Dtpg~~~~~l~~~~~~~---l~~------~~~~~~--------~~LSg 269 (327)
..+..+. .+..+++|.|+| +.++.++..+..+....-+..+ ++. .+|+-. ..|||
T Consensus 418 ~~~~~~~-----lr~~iglV~QePvlF~~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSG 492 (1228)
T KOG0055|consen 418 RNLNLKW-----LRSQIGLVSQEPVLFATTIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSG 492 (1228)
T ss_pred hhcchHH-----HHhhcCeeeechhhhcccHHHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCCh
Confidence 9887655 778999999986 5566677777665422111111 111 111111 12999
Q ss_pred cccccccccccccccCCceEEccc------HHHHHHHHHHHHHH
Q 020346 270 NEPAKCSFNNCLHLGEPGCVVKGD------WERYQYYFQLLDEI 307 (327)
Q Consensus 270 Gq~q~~~~~~~~h~~ep~~~v~~~------~~r~~~~~~ll~e~ 307 (327)
||+||+++|+++ +.+|.++++|+ ++.-...++.|+..
T Consensus 493 GQKQRIAIARal-v~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~ 535 (1228)
T KOG0055|consen 493 GQKQRIAIARAL-VRNPKILLLDEATSALDAESERVVQEALDKA 535 (1228)
T ss_pred HHHHHHHHHHHH-HhCCCEEEecCcccccCHHHHHHHHHHHHHh
Confidence 999999999999 99999999994 45555565556544
|
|
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.2e-21 Score=175.01 Aligned_cols=161 Identities=15% Similarity=0.200 Sum_probs=113.2
Q ss_pred CceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccccc
Q 020346 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (327)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~ 215 (327)
.+.+..+|+.-.+++++++.+ +|++++||||||||||||+|+|.| +|+|++|+|.++|+++...+..
T Consensus 7 v~~l~k~FGGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG------------~~~P~~G~v~~~G~~it~l~p~ 74 (250)
T COG0411 7 VRGLSKRFGGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITG------------FYKPSSGTVIFRGRDITGLPPH 74 (250)
T ss_pred eccceeecCCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecc------------cccCCCceEEECCcccCCCCHH
Confidence 456778899999999999998 999999999999999999999999 9999999999999999998876
Q ss_pred CCCcceeeEEEEEEEccCCCeEEeCcccCCc-------ccc-----------------ccCHhHHhhhhHHHHHhcCccc
Q 020346 216 SGRGKHTTRHVSLLPLSGGGYLADTPGFNQP-------SLL-----------------KVTKQSLAQTFPEIKEMLKANE 271 (327)
Q Consensus 216 ~~~g~~tt~~i~~v~q~~~~~i~Dtpg~~~~-------~l~-----------------~~~~~~l~~~~~~~~~~LSgGq 271 (327)
........+-++.....+++++.|+...... .++ .++.-.+.+...+....||+||
T Consensus 75 ~iar~Gi~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~ 154 (250)
T COG0411 75 RIARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQ 154 (250)
T ss_pred HHHhccceeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhH
Confidence 5322223333333323345666666433211 000 0000111222222334599999
Q ss_pred cccccccccccccCCceEEcccH------HHHHHHHHHHHHHHHh
Q 020346 272 PAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRIR 310 (327)
Q Consensus 272 ~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~~ 310 (327)
++++.+++|+ ..+|.++++|+| .-.+...++++++++.
T Consensus 155 qR~LEIArAL-a~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~ 198 (250)
T COG0411 155 QRRLEIARAL-ATQPKLLLLDEPAAGLNPEETEELAELIRELRDR 198 (250)
T ss_pred hHHHHHHHHH-hcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhc
Confidence 9999999999 999999999976 3444555666666553
|
|
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.3e-20 Score=191.54 Aligned_cols=140 Identities=14% Similarity=0.271 Sum_probs=107.8
Q ss_pred cCCceeeccCcc--hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecc
Q 020346 135 WGYEPLFCSVES--KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (327)
Q Consensus 135 ~~~~~~~~s~~~--~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~ 211 (327)
+.++.+.++|.+ +.+++++++.+ +|+.++|+|+||+|||||+++|+| +++|++|+|.+||+++..
T Consensus 342 i~~~~vsf~y~~~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~g------------l~~p~~G~I~i~g~~i~~ 409 (582)
T PRK11176 342 IEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTR------------FYDIDEGEILLDGHDLRD 409 (582)
T ss_pred EEEEEEEEecCCCCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHh------------ccCCCCceEEECCEEhhh
Confidence 567888999964 56999999998 999999999999999999999999 999999999999999988
Q ss_pred ccccCCCcceeeEEEEEEEccC---CCeEEeCcccCCccccccCHhHHhh------------hhHH--------HHHhcC
Q 020346 212 VSTKSGRGKHTTRHVSLLPLSG---GGYLADTPGFNQPSLLKVTKQSLAQ------------TFPE--------IKEMLK 268 (327)
Q Consensus 212 ~s~~~~~g~~tt~~i~~v~q~~---~~~i~Dtpg~~~~~l~~~~~~~l~~------------~~~~--------~~~~LS 268 (327)
++... .++.++|+||++ ++++.|+..+..+. ..+.+++.. .+|+ -...||
T Consensus 410 ~~~~~-----~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~--~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LS 482 (582)
T PRK11176 410 YTLAS-----LRNQVALVSQNVHLFNDTIANNIAYARTE--QYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLS 482 (582)
T ss_pred cCHHH-----HHhhceEEccCceeecchHHHHHhcCCCC--CCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCC
Confidence 87554 678899999985 44555555543211 011111111 1110 012389
Q ss_pred ccccccccccccccccCCceEEcccH
Q 020346 269 ANEPAKCSFNNCLHLGEPGCVVKGDW 294 (327)
Q Consensus 269 gGq~q~~~~~~~~h~~ep~~~v~~~~ 294 (327)
|||+||+++++++ +.+|.++|+|||
T Consensus 483 GGqrQRi~LARal-l~~~~ililDEp 507 (582)
T PRK11176 483 GGQRQRIAIARAL-LRDSPILILDEA 507 (582)
T ss_pred HHHHHHHHHHHHH-HhCCCEEEEECc
Confidence 9999999999999 999999999965
|
|
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.1e-20 Score=171.79 Aligned_cols=157 Identities=17% Similarity=0.192 Sum_probs=107.4
Q ss_pred cCCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccc
Q 020346 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (327)
Q Consensus 135 ~~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s 213 (327)
+.++.+.++|.+..+++++++.+ +|++++|+|+||||||||+++|+| +++|++|+|+++|.++...+
T Consensus 4 l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G------------l~~p~~G~i~~~g~~i~~~~ 71 (241)
T PRK14250 4 IEFKEVSYSSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINR------------LIDPTEGSILIDGVDIKTID 71 (241)
T ss_pred EEEEeEEEEeCCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhC------------CCCCCCcEEEECCEEhhhcC
Confidence 34567777887777999999998 999999999999999999999999 88999999999999876543
Q ss_pred ccCCCcceeeEEEEEEEccCCC---eEEeCcccCCcccc--ccCHhHHhhh-------hHHHHHhcCccccccccccccc
Q 020346 214 TKSGRGKHTTRHVSLLPLSGGG---YLADTPGFNQPSLL--KVTKQSLAQT-------FPEIKEMLKANEPAKCSFNNCL 281 (327)
Q Consensus 214 ~~~~~g~~tt~~i~~v~q~~~~---~i~Dtpg~~~~~l~--~~~~~~l~~~-------~~~~~~~LSgGq~q~~~~~~~~ 281 (327)
... .++.+++++|++.. .+.++..+...... .....++... .......|||||+||+.+++++
T Consensus 72 ~~~-----~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al 146 (241)
T PRK14250 72 VID-----LRRKIGMVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTL 146 (241)
T ss_pred hHH-----hhhcEEEEecCchhchhhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHH
Confidence 222 35678999997532 11122111100000 0000011100 0111234999999999999999
Q ss_pred cccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 282 HLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 282 h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
+.+|.++++|+| ...+.+.+++.++..
T Consensus 147 -~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~ 179 (241)
T PRK14250 147 -ANNPEVLLLDEPTSALDPTSTEIIEELIVKLKN 179 (241)
T ss_pred -hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence 899999999965 344555566666543
|
|
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=5.1e-20 Score=172.15 Aligned_cols=156 Identities=13% Similarity=0.148 Sum_probs=106.2
Q ss_pred CceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccccc
Q 020346 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (327)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~ 215 (327)
++.+.++|++..+++++++.+ +|++++|+|+||||||||+++|+| +++|++|+|+++|.++.... .
T Consensus 4 ~~~l~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G------------l~~p~~G~i~~~g~~i~~~~-~ 70 (271)
T PRK13638 4 TSDLWFRYQDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSG------------LLRPQKGAVLWQGKPLDYSK-R 70 (271)
T ss_pred EEEEEEEcCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcC------------CCCCCccEEEECCEEccccc-C
Confidence 567788888778999999998 899999999999999999999999 89999999999999874211 1
Q ss_pred CCCcceeeEEEEEEEccCCCeEE-----eCcccCCccccccCHh-------HHhhh------hHHHHHhcCccccccccc
Q 020346 216 SGRGKHTTRHVSLLPLSGGGYLA-----DTPGFNQPSLLKVTKQ-------SLAQT------FPEIKEMLKANEPAKCSF 277 (327)
Q Consensus 216 ~~~g~~tt~~i~~v~q~~~~~i~-----Dtpg~~~~~l~~~~~~-------~l~~~------~~~~~~~LSgGq~q~~~~ 277 (327)
. ....++.++|+||++...+. ++..+.... ...... .+... .......|||||+||+.+
T Consensus 71 ~--~~~~~~~i~~v~q~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~l 147 (271)
T PRK13638 71 G--LLALRQQVATVFQDPEQQIFYTDIDSDIAFSLRN-LGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAI 147 (271)
T ss_pred C--HHHHHhheEEEeeChhhccccccHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHH
Confidence 0 01134679999997532111 111110000 000000 00000 000123499999999999
Q ss_pred cccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 278 NNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 278 ~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
++++ +.+|.++++|+| .....+.++++++..
T Consensus 148 araL-~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~ 184 (271)
T PRK13638 148 AGAL-VLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVA 184 (271)
T ss_pred HHHH-HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence 9999 999999999965 455566667766653
|
|
| >cd01857 HSR1_MMR1 HSR1/MMR1 | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.1e-18 Score=147.59 Aligned_cols=134 Identities=31% Similarity=0.380 Sum_probs=102.1
Q ss_pred cccccccEEEEEeecCCCCCCh-HHHHHHHHHHHhcCCCEEEEeecCCCCcHHHHHHHHhhhhhcCCceeeccCcchhhH
Q 020346 72 PPVANVDHLLLLFSMDQPKLEP-FALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVESKLGL 150 (327)
Q Consensus 72 ~~~anvD~lliv~~~~~p~~~~-~~l~r~L~~a~~~~~~~~ivlnK~Dl~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l 150 (327)
..++++|++++|+++..|..+. ..+.+++.... .++|+++|+||+|+.+++....|...+++.+++.+.+|..+...
T Consensus 7 ~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~~-~~k~~iivlNK~DL~~~~~~~~~~~~~~~~~~~ii~iSa~~~~~- 84 (141)
T cd01857 7 RVVERSDIVVQIVDARNPLLFRPPDLERYVKEVD-PRKKNILLLNKADLLTEEQRKAWAEYFKKEGIVVVFFSALKENA- 84 (141)
T ss_pred HHHhhCCEEEEEEEccCCcccCCHHHHHHHHhcc-CCCcEEEEEechhcCCHHHHHHHHHHHHhcCCeEEEEEecCCCc-
Confidence 3578999999999998876544 36788875432 58899999999999887766677777877778888888765432
Q ss_pred HHHHhhcCCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcceeeEEEEEEE
Q 020346 151 DSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLP 230 (327)
Q Consensus 151 ~~l~~~l~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~tt~~i~~v~ 230 (327)
+++++|+||+|||||+|.|.+.. ...++...+ ++++..++.
T Consensus 85 ----------~~~~~G~~~vGKstlin~l~~~~-------------------------~~~~~~~~~----~~~~~~~~~ 125 (141)
T cd01857 85 ----------TIGLVGYPNVGKSSLINALVGKK-------------------------KVSVSATPG----KTKHFQTIF 125 (141)
T ss_pred ----------EEEEECCCCCCHHHHHHHHhCCC-------------------------ceeeCCCCC----cccceEEEE
Confidence 79999999999999999999832 112333344 455566777
Q ss_pred ccCCCeEEeCcccCCc
Q 020346 231 LSGGGYLADTPGFNQP 246 (327)
Q Consensus 231 q~~~~~i~Dtpg~~~~ 246 (327)
.+.+.+++||||+..|
T Consensus 126 ~~~~~~i~DtpG~~~p 141 (141)
T cd01857 126 LTPTITLCDCPGLVFP 141 (141)
T ss_pred eCCCEEEEECCCcCCC
Confidence 7777899999998643
|
Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus. |
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.1e-20 Score=190.70 Aligned_cols=142 Identities=16% Similarity=0.235 Sum_probs=109.1
Q ss_pred hcCCceeeccCcc--hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeec
Q 020346 134 TWGYEPLFCSVES--KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (327)
Q Consensus 134 ~~~~~~~~~s~~~--~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~ 210 (327)
.+.++.++++|.+ +.+++++++.+ +|++++|+|+||+|||||+++|+| +++|++|+|.++|.++.
T Consensus 338 ~i~~~~v~f~y~~~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g------------~~~p~~G~I~i~g~~i~ 405 (574)
T PRK11160 338 SLTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTR------------AWDPQQGEILLNGQPIA 405 (574)
T ss_pred eEEEEEEEEECCCCCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhc------------CCCCCCceEEECCEEhh
Confidence 3667889999964 46899999998 999999999999999999999999 99999999999999998
Q ss_pred cccccCCCcceeeEEEEEEEccC---CCeEEeCcccCCccccc---------cCHhHHhhhhHH--------HHHhcCcc
Q 020346 211 EVSTKSGRGKHTTRHVSLLPLSG---GGYLADTPGFNQPSLLK---------VTKQSLAQTFPE--------IKEMLKAN 270 (327)
Q Consensus 211 ~~s~~~~~g~~tt~~i~~v~q~~---~~~i~Dtpg~~~~~l~~---------~~~~~l~~~~~~--------~~~~LSgG 270 (327)
+++... .+++++++||++ ++++.|+..+..+...+ ....+.... |+ -...||||
T Consensus 406 ~~~~~~-----~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~-p~GldT~vge~g~~LSgG 479 (574)
T PRK11160 406 DYSEAA-----LRQAISVVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLED-DKGLNAWLGEGGRQLSGG 479 (574)
T ss_pred hCCHHH-----HHhheeEEcccchhhcccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcC-ccccCchhcCCCCCCCHH
Confidence 887554 678899999986 44555665554322111 010111011 11 11239999
Q ss_pred ccccccccccccccCCceEEcccH
Q 020346 271 EPAKCSFNNCLHLGEPGCVVKGDW 294 (327)
Q Consensus 271 q~q~~~~~~~~h~~ep~~~v~~~~ 294 (327)
|+||+++++++ +.+|.++++||+
T Consensus 480 qrqRialARal-l~~~~ililDE~ 502 (574)
T PRK11160 480 EQRRLGIARAL-LHDAPLLLLDEP 502 (574)
T ss_pred HHHHHHHHHHH-hcCCCEEEEeCC
Confidence 99999999999 999999999965
|
|
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.2e-20 Score=169.82 Aligned_cols=157 Identities=17% Similarity=0.146 Sum_probs=106.6
Q ss_pred CCceeeccCcc----hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeec
Q 020346 136 GYEPLFCSVES----KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (327)
Q Consensus 136 ~~~~~~~s~~~----~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~ 210 (327)
.++.+.++|.+ ..+++++++.+ +|++++|+|+||+|||||+++|+| +++|++|+|+++|.++.
T Consensus 8 ~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~G------------l~~p~~G~i~~~g~~~~ 75 (228)
T PRK10584 8 EVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAG------------LDDGSSGEVSLVGQPLH 75 (228)
T ss_pred EEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHc------------CCCCCCeeEEECCEEcc
Confidence 35667777764 24899999998 999999999999999999999999 89999999999999876
Q ss_pred cccccCCCcceeeEEEEEEEccCCC----eEEeCcccCCc--c-------------ccccCHhHHhhhhHHHHHhcCccc
Q 020346 211 EVSTKSGRGKHTTRHVSLLPLSGGG----YLADTPGFNQP--S-------------LLKVTKQSLAQTFPEIKEMLKANE 271 (327)
Q Consensus 211 ~~s~~~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~--~-------------l~~~~~~~l~~~~~~~~~~LSgGq 271 (327)
..+.... .....+.+++++|.+.. ++.|+..+... . +..+...+..+.. ...||+||
T Consensus 76 ~~~~~~~-~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---~~~LS~Ge 151 (228)
T PRK10584 76 QMDEEAR-AKLRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHL---PAQLSGGE 151 (228)
T ss_pred cCCHHHH-HHHHhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCC---hhhCCHHH
Confidence 5432110 00013568999987521 22233221100 0 0001111111111 23499999
Q ss_pred cccccccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 272 PAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 272 ~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
+||+.+++++ +.+|.++|+|+| ...+.+.++++++..
T Consensus 152 ~qrl~la~al-~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~ 194 (228)
T PRK10584 152 QQRVALARAF-NGRPDVLFADEPTGNLDRQTGDKIADLLFSLNR 194 (228)
T ss_pred HHHHHHHHHH-hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999 899999999965 455666677766644
|
|
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.1e-20 Score=175.04 Aligned_cols=156 Identities=18% Similarity=0.292 Sum_probs=107.7
Q ss_pred CCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccc
Q 020346 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (327)
Q Consensus 136 ~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~ 214 (327)
.++.+.++|++..+++++++.+ +|++++|+|+||+|||||+++|+| +++|++|+|.++|.++...+.
T Consensus 4 ~~~~l~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G------------l~~~~~G~i~~~g~~~~~~~~ 71 (255)
T PRK11231 4 RTENLTVGYGTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFAR------------LLTPQSGTVFLGDKPISMLSS 71 (255)
T ss_pred EEEeEEEEECCEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhC------------CcCCCCcEEEECCEEhHHCCH
Confidence 3567778888778999999998 999999999999999999999999 889999999999988765432
Q ss_pred cCCCcceeeEEEEEEEccCCC----eEEeCcccCCcc----ccccC---HhHHhhhh---------HHHHHhcCcccccc
Q 020346 215 KSGRGKHTTRHVSLLPLSGGG----YLADTPGFNQPS----LLKVT---KQSLAQTF---------PEIKEMLKANEPAK 274 (327)
Q Consensus 215 ~~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~~----l~~~~---~~~l~~~~---------~~~~~~LSgGq~q~ 274 (327)
.. ..+.++++||+... ++.|+..+.... ..... ........ ......|||||+||
T Consensus 72 ~~-----~~~~i~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr 146 (255)
T PRK11231 72 RQ-----LARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQR 146 (255)
T ss_pred HH-----HhhheEEecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHH
Confidence 21 34568999987522 222222211000 00000 00011100 11122399999999
Q ss_pred ccccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 275 CSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 275 ~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
+.+++++ +.+|.++|+|+| ...+.+.+++.++..
T Consensus 147 v~laral-~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~ 186 (255)
T PRK11231 147 AFLAMVL-AQDTPVVLLDEPTTYLDINHQVELMRLMRELNT 186 (255)
T ss_pred HHHHHHH-hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH
Confidence 9999999 999999999965 455556666666643
|
|
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.5e-20 Score=176.67 Aligned_cols=156 Identities=14% Similarity=0.203 Sum_probs=108.4
Q ss_pred cCCceeeccCcc--hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecc
Q 020346 135 WGYEPLFCSVES--KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (327)
Q Consensus 135 ~~~~~~~~s~~~--~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~ 211 (327)
+.++.+.++|.+ ..+++++++.+ +|++++|+|+||+|||||+++|+| +++|++|+|.++|.++..
T Consensus 6 l~~~~l~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G------------~~~p~~G~i~~~g~~i~~ 73 (279)
T PRK13635 6 IRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNG------------LLLPEAGTITVGGMVLSE 73 (279)
T ss_pred EEEEEEEEEeCCCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhc------------CCCCCCcEEEECCEECCc
Confidence 345677888863 46999999998 999999999999999999999999 889999999999998865
Q ss_pred ccccCCCcceeeEEEEEEEccCC-----CeEEeCcccCCccccccCHh-------------HHhhhhHHHHHhcCccccc
Q 020346 212 VSTKSGRGKHTTRHVSLLPLSGG-----GYLADTPGFNQPSLLKVTKQ-------------SLAQTFPEIKEMLKANEPA 273 (327)
Q Consensus 212 ~s~~~~~g~~tt~~i~~v~q~~~-----~~i~Dtpg~~~~~l~~~~~~-------------~l~~~~~~~~~~LSgGq~q 273 (327)
.+... ..+.++|++|++. .++.|+..+.... ...... .+..........|||||+|
T Consensus 74 ~~~~~-----~~~~i~~~~q~~~~~~~~~tv~enl~~~~~~-~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~q 147 (279)
T PRK13635 74 ETVWD-----VRRQVGMVFQNPDNQFVGATVQDDVAFGLEN-IGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQ 147 (279)
T ss_pred CcHHH-----HhhheEEEEeCHHHhcccccHHHHHhhhHhh-CCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHH
Confidence 43222 3467999999752 1233332221000 000100 0100011112249999999
Q ss_pred cccccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 274 KCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 274 ~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
|+.|++++ +.+|.++|+|+| ...+.+.+++.++..
T Consensus 148 rv~laral-~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~ 188 (279)
T PRK13635 148 RVAIAGVL-ALQPDIIILDEATSMLDPRGRREVLETVRQLKE 188 (279)
T ss_pred HHHHHHHH-HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence 99999999 999999999955 455566666666654
|
|
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.8e-20 Score=174.75 Aligned_cols=157 Identities=16% Similarity=0.223 Sum_probs=108.3
Q ss_pred cCCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccc
Q 020346 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (327)
Q Consensus 135 ~~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s 213 (327)
+.++.+.++|++..+++++++.+ +|++++|+|+||+|||||+++|+| +++|++|+|.++|.++...+
T Consensus 12 l~i~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G------------l~~~~~G~i~~~g~~~~~~~ 79 (265)
T PRK10575 12 FALRNVSFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGR------------HQPPSEGEILLDAQPLESWS 79 (265)
T ss_pred EEEeeEEEEECCEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcC------------CCCCCCCEEEECCEehhhCC
Confidence 44667788887778999999998 999999999999999999999999 89999999999999876543
Q ss_pred ccCCCcceeeEEEEEEEccCCC----eEEeCcccCCcc----ccccC---H---hHHhhh--hHH----HHHhcCccccc
Q 020346 214 TKSGRGKHTTRHVSLLPLSGGG----YLADTPGFNQPS----LLKVT---K---QSLAQT--FPE----IKEMLKANEPA 273 (327)
Q Consensus 214 ~~~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~~----l~~~~---~---~~l~~~--~~~----~~~~LSgGq~q 273 (327)
... .++.+++++|.... ++.|+..+.... ..... . ..+... +++ ....|||||+|
T Consensus 80 ~~~-----~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~q 154 (265)
T PRK10575 80 SKA-----FARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQ 154 (265)
T ss_pred HHH-----HhhheEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHH
Confidence 322 34578999987422 222222211000 00000 0 011111 011 11239999999
Q ss_pred cccccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 274 KCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 274 ~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
|+.+++++ +.+|+++|+|+| .-.+.+.+++.++..
T Consensus 155 rv~laral-~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~ 195 (265)
T PRK10575 155 RAWIAMLV-AQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQ 195 (265)
T ss_pred HHHHHHHH-hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH
Confidence 99999999 999999999965 344555566666543
|
|
| >TIGR01166 cbiO cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.1e-20 Score=165.52 Aligned_cols=148 Identities=16% Similarity=0.212 Sum_probs=99.0
Q ss_pred cchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcceee
Q 020346 145 ESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTT 223 (327)
Q Consensus 145 ~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~tt 223 (327)
++..+++++++.+ +|++++|+|+||||||||+++|+| +++|++|+|+++|.++.. .... .....
T Consensus 3 ~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G------------~~~~~~G~i~~~g~~~~~-~~~~--~~~~~ 67 (190)
T TIGR01166 3 GGPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNG------------LLRPQSGAVLIDGEPLDY-SRKG--LLERR 67 (190)
T ss_pred CccceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhC------------CCCCCceeEEECCEEccc-cccc--hHHHH
Confidence 4456899999998 999999999999999999999999 889999999999988742 1110 01235
Q ss_pred EEEEEEEccCCC-----eEEeCcccCCccccccCH-------h------HHhhhhHHHHHhcCccccccccccccccccC
Q 020346 224 RHVSLLPLSGGG-----YLADTPGFNQPSLLKVTK-------Q------SLAQTFPEIKEMLKANEPAKCSFNNCLHLGE 285 (327)
Q Consensus 224 ~~i~~v~q~~~~-----~i~Dtpg~~~~~l~~~~~-------~------~l~~~~~~~~~~LSgGq~q~~~~~~~~h~~e 285 (327)
+.+++++|.+.. ++.|+..+.... ..... . .+..........||+||+||+.+++++ +.+
T Consensus 68 ~~i~~~~q~~~~~~~~~tv~~nl~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral-~~~ 145 (190)
T TIGR01166 68 QRVGLVFQDPDDQLFAADVDQDVAFGPLN-LGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAV-AMR 145 (190)
T ss_pred hhEEEEecChhhccccccHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHH-hcC
Confidence 678999997521 112221111000 00000 0 011111111234999999999999999 999
Q ss_pred CceEEcccH------HHHHHHHHHHHHHHH
Q 020346 286 PGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 286 p~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
|.++|+|+| ...+.+.++++++..
T Consensus 146 p~llllDEPt~~LD~~~~~~~~~~l~~~~~ 175 (190)
T TIGR01166 146 PDVLLLDEPTAGLDPAGREQMLAILRRLRA 175 (190)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHH
Confidence 999999965 455556666666643
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. |
| >TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Probab=99.79 E-value=8e-21 Score=169.88 Aligned_cols=157 Identities=17% Similarity=0.215 Sum_probs=105.4
Q ss_pred ceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccC
Q 020346 138 EPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKS 216 (327)
Q Consensus 138 ~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~ 216 (327)
+.+.+.|++..+++++++.+ +|++++|+|+||+|||||+++|+| +++|++|+|.++|.++.......
T Consensus 2 ~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G------------~~~~~~G~i~~~g~~~~~~~~~~ 69 (206)
T TIGR03608 2 KNISKKFGDKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGL------------LEKFDSGQVYLNGKETPPLNSKK 69 (206)
T ss_pred cceEEEECCEEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhc------------CCCCCCeEEEECCEEccccchhh
Confidence 35566777677999999998 999999999999999999999999 88999999999999865432110
Q ss_pred CCcceeeEEEEEEEccCCC----eEEeCcccCCccccccC----H---h------HHhhhhHHHHHhcCccccccccccc
Q 020346 217 GRGKHTTRHVSLLPLSGGG----YLADTPGFNQPSLLKVT----K---Q------SLAQTFPEIKEMLKANEPAKCSFNN 279 (327)
Q Consensus 217 ~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~~l~~~~----~---~------~l~~~~~~~~~~LSgGq~q~~~~~~ 279 (327)
. .....+.+++++|.+.. ++.|+..+.... .... . . .+..........||+||+||+.+++
T Consensus 70 ~-~~~~~~~i~~~~q~~~~~~~~t~~e~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~lar 147 (206)
T TIGR03608 70 A-SKFRREKLGYLFQNFALIENETVEENLDLGLKY-KKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALAR 147 (206)
T ss_pred H-HHHHHhCeeEEecchhhccCCcHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHH
Confidence 0 00134578999987422 222222110000 0000 0 0 0111111112349999999999999
Q ss_pred cccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 280 CLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 280 ~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
++ +.+|.++++|+| ...+.+.++++++..
T Consensus 148 al-~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~ 182 (206)
T TIGR03608 148 AI-LKDPPLILADEPTGSLDPKNRDEVLDLLLELND 182 (206)
T ss_pred HH-HcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHh
Confidence 99 999999999965 455666666766643
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. |
| >cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Probab=99.79 E-value=6.5e-20 Score=164.09 Aligned_cols=141 Identities=17% Similarity=0.250 Sum_probs=104.6
Q ss_pred CceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCccccccc--ccccccceeecceeecccc
Q 020346 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNW--FEPILGSKWFEDQRVGEVS 213 (327)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~--~~p~~G~i~~~g~~v~~~s 213 (327)
++.+.++|.+..+++++++.+ +|++++|+|+||+|||||+++|+| + ++|++|+|.++|.++...+
T Consensus 3 ~~~l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G------------~~~~~p~~G~i~~~g~~~~~~~ 70 (200)
T cd03217 3 IKDLHVSVGGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMG------------HPKYEVTEGEILFKGEDITDLP 70 (200)
T ss_pred EEEEEEEeCCEEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhC------------CCcCCCCccEEEECCEECCcCC
Confidence 456777787777999999998 999999999999999999999999 5 5899999999999887654
Q ss_pred ccCCCcceeeEEEEEEEccCCCeEEeCcccCCccccccCHhHHhhhhHHHHHhcCccccccccccccccccCCceEEccc
Q 020346 214 TKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGD 293 (327)
Q Consensus 214 ~~~~~g~~tt~~i~~v~q~~~~~i~Dtpg~~~~~l~~~~~~~l~~~~~~~~~~LSgGq~q~~~~~~~~h~~ep~~~v~~~ 293 (327)
.... .+..++|+||.+.. +.. ....+....++ ..||+||+||+.+++++ +.+|.++++|+
T Consensus 71 ~~~~----~~~~i~~v~q~~~~-------~~~-----~~~~~~l~~~~---~~LS~G~~qrv~laral-~~~p~illlDE 130 (200)
T cd03217 71 PEER----ARLGIFLAFQYPPE-------IPG-----VKNADFLRYVN---EGFSGGEKKRNEILQLL-LLEPDLAILDE 130 (200)
T ss_pred HHHH----hhCcEEEeecChhh-------ccC-----ccHHHHHhhcc---ccCCHHHHHHHHHHHHH-hcCCCEEEEeC
Confidence 3211 23458999986321 111 11112112222 34999999999999999 99999999996
Q ss_pred H------HHHHHHHHHHHHHHH
Q 020346 294 W------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 294 ~------~r~~~~~~ll~e~~~ 309 (327)
| ...+.+.+++.++..
T Consensus 131 Pt~~LD~~~~~~l~~~L~~~~~ 152 (200)
T cd03217 131 PDSGLDIDALRLVAEVINKLRE 152 (200)
T ss_pred CCccCCHHHHHHHHHHHHHHHH
Confidence 5 455566666666643
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. |
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.7e-20 Score=172.06 Aligned_cols=155 Identities=16% Similarity=0.203 Sum_probs=106.3
Q ss_pred CceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccccc
Q 020346 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (327)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~ 215 (327)
++.+.++|.+..+++++++.+ +|++++|+|+||+|||||+++|+| +++|++|+|+++|.++...+..
T Consensus 5 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G------------~~~p~~G~i~~~g~~~~~~~~~ 72 (242)
T TIGR03411 5 LEGLSVSFDGFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITG------------KTRPDEGSVLFGGTDLTGLPEH 72 (242)
T ss_pred EEeeEEEcCCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhC------------CCCCCCCeEEECCeecCCCCHH
Confidence 456777787777999999998 999999999999999999999999 8899999999999877654322
Q ss_pred CCCcceeeEEEEEEEccCCC----eEEeCcccCCcc-------c----cccCHhHHhh---------hhHHHHHhcCccc
Q 020346 216 SGRGKHTTRHVSLLPLSGGG----YLADTPGFNQPS-------L----LKVTKQSLAQ---------TFPEIKEMLKANE 271 (327)
Q Consensus 216 ~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~~-------l----~~~~~~~l~~---------~~~~~~~~LSgGq 271 (327)
.. .++.+++++|.+.. ++.|+..+.... + .......... ........|||||
T Consensus 73 ~~----~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge 148 (242)
T TIGR03411 73 QI----ARAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQ 148 (242)
T ss_pred HH----HhcCeeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHH
Confidence 11 23468999987522 222322111000 0 0000000010 1111123499999
Q ss_pred cccccccccccccCCceEEcccH------HHHHHHHHHHHHHH
Q 020346 272 PAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIR 308 (327)
Q Consensus 272 ~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~ 308 (327)
+||+.|++++ +.+|.++++|+| .......++++++.
T Consensus 149 ~qrv~laral-~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~ 190 (242)
T TIGR03411 149 KQWLEIGMLL-MQDPKLLLLDEPVAGMTDEETEKTAELLKSLA 190 (242)
T ss_pred HHHHHHHHHH-hcCCCEEEecCCccCCCHHHHHHHHHHHHHHh
Confidence 9999999999 999999999955 45566666776664
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.5e-20 Score=197.63 Aligned_cols=143 Identities=17% Similarity=0.302 Sum_probs=109.8
Q ss_pred cCCceeeccCcc---hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeec
Q 020346 135 WGYEPLFCSVES---KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (327)
Q Consensus 135 ~~~~~~~~s~~~---~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~ 210 (327)
+.++.++++|.+ +.+++++++.+ +|++++|+|+||+|||||+|+|.| +++|++|+|.+||+++.
T Consensus 479 I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~g------------l~~p~~G~I~idg~~i~ 546 (711)
T TIGR00958 479 IEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQN------------LYQPTGGQVLLDGVPLV 546 (711)
T ss_pred EEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHh------------ccCCCCCEEEECCEEHH
Confidence 567889999964 46899999998 999999999999999999999999 99999999999999999
Q ss_pred cccccCCCcceeeEEEEEEEccC---CCeEEeCcccCCccccc---------cCHhHHhhhhHH-----H---HHhcCcc
Q 020346 211 EVSTKSGRGKHTTRHVSLLPLSG---GGYLADTPGFNQPSLLK---------VTKQSLAQTFPE-----I---KEMLKAN 270 (327)
Q Consensus 211 ~~s~~~~~g~~tt~~i~~v~q~~---~~~i~Dtpg~~~~~l~~---------~~~~~l~~~~~~-----~---~~~LSgG 270 (327)
++.... .+++++++||++ ++++.|+..+..+.... ....+.-..+|+ + ...||||
T Consensus 547 ~~~~~~-----lr~~i~~v~Q~~~lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGG 621 (711)
T TIGR00958 547 QYDHHY-----LHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGG 621 (711)
T ss_pred hcCHHH-----HHhhceEEecCccccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHH
Confidence 887554 678899999986 44555665544322110 000111111110 1 1249999
Q ss_pred ccccccccccccccCCceEEcccHH
Q 020346 271 EPAKCSFNNCLHLGEPGCVVKGDWE 295 (327)
Q Consensus 271 q~q~~~~~~~~h~~ep~~~v~~~~~ 295 (327)
|+||+++++++ +.+|.++++||+.
T Consensus 622 QkQRlalARAL-l~~p~ILILDEpT 645 (711)
T TIGR00958 622 QKQRIAIARAL-VRKPRVLILDEAT 645 (711)
T ss_pred HHHHHHHHHHH-hcCCCEEEEEccc
Confidence 99999999999 9999999999663
|
|
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=4e-20 Score=172.75 Aligned_cols=156 Identities=18% Similarity=0.261 Sum_probs=108.3
Q ss_pred CCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccc
Q 020346 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (327)
Q Consensus 136 ~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~ 214 (327)
.++.+.++|.+..+++++++.+ +|++++|+|+||||||||+++|+| +++|++|+|+++|.++...+.
T Consensus 9 ~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G------------l~~p~~G~i~~~g~~i~~~~~ 76 (269)
T PRK11831 9 DMRGVSFTRGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGG------------QIAPDHGEILFDGENIPAMSR 76 (269)
T ss_pred EEeCeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhC------------CCCCCCceEEECCEEccccCh
Confidence 4566777787777899999998 999999999999999999999999 889999999999998765432
Q ss_pred cCCCcceeeEEEEEEEccCCC----eEEeCcccCCcc----------------ccccCHhHHhhhhHHHHHhcCcccccc
Q 020346 215 KSGRGKHTTRHVSLLPLSGGG----YLADTPGFNQPS----------------LLKVTKQSLAQTFPEIKEMLKANEPAK 274 (327)
Q Consensus 215 ~~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~~----------------l~~~~~~~l~~~~~~~~~~LSgGq~q~ 274 (327)
... ...++.++++||.... ++.|+..+.... ++.+......+.. ...|||||+||
T Consensus 77 ~~~--~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~---~~~LSgGq~qr 151 (269)
T PRK11831 77 SRL--YTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLM---PSELSGGMARR 151 (269)
T ss_pred hhH--HHHhhcEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCC---hhhCCHHHHHH
Confidence 110 0134568999997522 222322211000 0000111111111 23499999999
Q ss_pred ccccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 275 CSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 275 ~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
+.|++++ +.+|.++|+|+| ...+.+.++++++..
T Consensus 152 v~laral-~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~ 191 (269)
T PRK11831 152 AALARAI-ALEPDLIMFDEPFVGQDPITMGVLVKLISELNS 191 (269)
T ss_pred HHHHHHH-hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHH
Confidence 9999999 999999999965 455666667776644
|
|
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.4e-20 Score=168.08 Aligned_cols=155 Identities=12% Similarity=0.176 Sum_probs=107.4
Q ss_pred CceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccccc
Q 020346 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (327)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~ 215 (327)
++.+.+.|++..+++++++.+ +|++++|+|+||||||||+++|+| +++|++|+|+++|.++...+..
T Consensus 3 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G------------~~~~~~G~i~~~g~~~~~~~~~ 70 (230)
T TIGR03410 3 VSNLNVYYGQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMG------------LLPVKSGSIRLDGEDITKLPPH 70 (230)
T ss_pred EEeEEEEeCCeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhC------------CCCCCCCEEEECCEECCCCCHH
Confidence 456777887778999999998 999999999999999999999999 8999999999999887654322
Q ss_pred CCCcceeeEEEEEEEccCCC----eEEeCcccCCccccccCH----hHHhhhh-------HHHHHhcCcccccccccccc
Q 020346 216 SGRGKHTTRHVSLLPLSGGG----YLADTPGFNQPSLLKVTK----QSLAQTF-------PEIKEMLKANEPAKCSFNNC 280 (327)
Q Consensus 216 ~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~~l~~~~~----~~l~~~~-------~~~~~~LSgGq~q~~~~~~~ 280 (327)
. ...++++|+||++.. ++.|+..+..... .... ..+...+ ......|||||+||+.++++
T Consensus 71 ~----~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~-~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~a 145 (230)
T TIGR03410 71 E----RARAGIAYVPQGREIFPRLTVEENLLTGLAAL-PRRSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARA 145 (230)
T ss_pred H----HHHhCeEEeccCCcccCCCcHHHHHHHHHHhc-CcchHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHH
Confidence 1 024578999997532 1112111110000 0000 1111111 11123499999999999999
Q ss_pred ccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 281 LHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 281 ~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
+ +.+|+++++|+| ...+...+++.++..
T Consensus 146 l-~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~ 179 (230)
T TIGR03410 146 L-VTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRA 179 (230)
T ss_pred H-hcCCCEEEecCCcccCCHHHHHHHHHHHHHHHH
Confidence 9 999999999965 455556666766654
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.2e-20 Score=164.37 Aligned_cols=163 Identities=17% Similarity=0.213 Sum_probs=124.7
Q ss_pred cCCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccc
Q 020346 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (327)
Q Consensus 135 ~~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s 213 (327)
+..+.++.+|+..++|+++++.. +|.++.|||.||+||||+++||.= +..|++|.|+++|..+.-..
T Consensus 7 l~v~dlHK~~G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~------------LE~P~~G~I~v~geei~~k~ 74 (256)
T COG4598 7 LEVEDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINF------------LEKPSAGSIRVNGEEIRLKR 74 (256)
T ss_pred eehhHHHhhcccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHh------------hcCCCCceEEECCeEEEeee
Confidence 44567888999999999999997 999999999999999999999987 88999999999999887665
Q ss_pred ccCCCcc--------eeeEEEEEEEccCCCe--------EEeCccc----CC--------ccccccCHhHHhhhhHHHHH
Q 020346 214 TKSGRGK--------HTTRHVSLLPLSGGGY--------LADTPGF----NQ--------PSLLKVTKQSLAQTFPEIKE 265 (327)
Q Consensus 214 ~~~~~g~--------~tt~~i~~v~q~~~~~--------i~Dtpg~----~~--------~~l~~~~~~~l~~~~~~~~~ 265 (327)
.+.|.-+ ..++..+|++|.++.+ +++.|-. .. ..+..+...+..+.+|..
T Consensus 75 ~~~G~l~~ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~-- 152 (256)
T COG4598 75 DKDGQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAH-- 152 (256)
T ss_pred CCCCCeeeCCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCccc--
Confidence 5444321 3456788999987653 2333321 11 113344445555666766
Q ss_pred hcCccccccccccccccccCCceEEcc------cHHHHHHHHHHHHHHHHhHHH
Q 020346 266 MLKANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIREEF 313 (327)
Q Consensus 266 ~LSgGq~q~~~~~~~~h~~ep~~~v~~------~~~r~~~~~~ll~e~~~~~~~ 313 (327)
|||||+||+++++++ ..||.+.+.| ||+=....++++..+.+.+++
T Consensus 153 -LSGGQQQR~aIARaL-ameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrT 204 (256)
T COG4598 153 -LSGGQQQRVAIARAL-AMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRT 204 (256)
T ss_pred -cCchHHHHHHHHHHH-hcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCe
Confidence 999999999999999 8899999988 566667777777777776653
|
|
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.2e-20 Score=171.90 Aligned_cols=148 Identities=18% Similarity=0.192 Sum_probs=106.0
Q ss_pred cCCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccc
Q 020346 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (327)
Q Consensus 135 ~~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s 213 (327)
+.++.+.++|++..+++++++.+ +|++++|+|+||||||||+++|+| +++|++|+|+++|.++..
T Consensus 13 l~i~~l~~~~~~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~G------------l~~p~~G~i~~~g~~~~~-- 78 (257)
T PRK11247 13 LLLNAVSKRYGERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAG------------LETPSAGELLAGTAPLAE-- 78 (257)
T ss_pred EEEEEEEEEECCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhc------------CCCCCCeEEEECCEEHHH--
Confidence 45678888888778999999998 999999999999999999999999 889999999999876532
Q ss_pred ccCCCcceeeEEEEEEEccCCC----eEEeCcccCCcc---------ccccCHhHHhhhhHHHHHhcCcccccccccccc
Q 020346 214 TKSGRGKHTTRHVSLLPLSGGG----YLADTPGFNQPS---------LLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNC 280 (327)
Q Consensus 214 ~~~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~~---------l~~~~~~~l~~~~~~~~~~LSgGq~q~~~~~~~ 280 (327)
.++.++|++|.+.. ++.|+..+.... ++.+........ ....|||||+||+.++++
T Consensus 79 --------~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~---~~~~LSgGqkqrl~lara 147 (257)
T PRK11247 79 --------AREDTRLMFQDARLLPWKKVIDNVGLGLKGQWRDAALQALAAVGLADRANE---WPAALSGGQKQRVALARA 147 (257)
T ss_pred --------hhCceEEEecCccCCCCCcHHHHHHhcccchHHHHHHHHHHHcCChhHhcC---ChhhCCHHHHHHHHHHHH
Confidence 34568899997532 222332221100 001111111111 123499999999999999
Q ss_pred ccccCCceEEcccH------HHHHHHHHHHHHHH
Q 020346 281 LHLGEPGCVVKGDW------ERYQYYFQLLDEIR 308 (327)
Q Consensus 281 ~h~~ep~~~v~~~~------~r~~~~~~ll~e~~ 308 (327)
+ +.+|.++++|+| .....+.+++.++.
T Consensus 148 L-~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~ 180 (257)
T PRK11247 148 L-IHRPGLLLLDEPLGALDALTRIEMQDLIESLW 180 (257)
T ss_pred H-hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Confidence 9 999999999965 34455556666653
|
|
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.2e-20 Score=179.28 Aligned_cols=153 Identities=15% Similarity=0.212 Sum_probs=108.2
Q ss_pred CCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccc
Q 020346 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (327)
Q Consensus 136 ~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~ 214 (327)
.++.+.++|++..+++++++.+ +|++++|+||||||||||+++|+| +++|++|+|.++|.++.....
T Consensus 4 ~~~~l~~~~~~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~G------------l~~~~~G~i~i~g~~~~~~~~ 71 (301)
T TIGR03522 4 RVSSLTKLYGTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITG------------YLPPDSGSVQVCGEDVLQNPK 71 (301)
T ss_pred EEEEEEEEECCEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhC------------CCCCCceEEEECCEEcccChH
Confidence 4567788888888999999998 999999999999999999999999 889999999999988754221
Q ss_pred cCCCcceeeEEEEEEEccCCC----eEEeCcccCCccccccC-------Hh------HHhhhhHHHHHhcCccccccccc
Q 020346 215 KSGRGKHTTRHVSLLPLSGGG----YLADTPGFNQPSLLKVT-------KQ------SLAQTFPEIKEMLKANEPAKCSF 277 (327)
Q Consensus 215 ~~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~~l~~~~-------~~------~l~~~~~~~~~~LSgGq~q~~~~ 277 (327)
. .++.++|+||.+.. ++.|+..+... +.... .. ++..........||+||+||+.|
T Consensus 72 -~-----~~~~ig~~~q~~~l~~~~tv~e~l~~~~~-~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~l 144 (301)
T TIGR03522 72 -E-----VQRNIGYLPEHNPLYLDMYVREYLQFIAG-IYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGL 144 (301)
T ss_pred -H-----HHhceEEecCCCCCCCCCcHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHH
Confidence 1 45679999997532 22222211000 00000 00 11111111234599999999999
Q ss_pred cccccccCCceEEcccH------HHHHHHHHHHHHHH
Q 020346 278 NNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIR 308 (327)
Q Consensus 278 ~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~ 308 (327)
++++ +++|.++++|+| .-.+.+++++++++
T Consensus 145 a~al-~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~ 180 (301)
T TIGR03522 145 AQAL-IHDPKVLILDEPTTGLDPNQLVEIRNVIKNIG 180 (301)
T ss_pred HHHH-hcCCCEEEEcCCcccCCHHHHHHHHHHHHHhc
Confidence 9999 999999999955 45555666666663
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.4e-20 Score=173.83 Aligned_cols=157 Identities=18% Similarity=0.280 Sum_probs=109.2
Q ss_pred cCCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccc
Q 020346 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (327)
Q Consensus 135 ~~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s 213 (327)
+.++.+.++|.+..+++++++.+ +|++++|+|+||||||||+++|+| +++|++|+|.++|.++...+
T Consensus 8 l~i~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G------------~~~~~~G~i~~~g~~~~~~~ 75 (265)
T PRK10253 8 LRGEQLTLGYGKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSR------------LMTPAHGHVWLDGEHIQHYA 75 (265)
T ss_pred EEEEEEEEEECCEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcC------------CCCCCCcEEEECCEEhhhCC
Confidence 45677888888778999999998 999999999999999999999999 88999999999999876543
Q ss_pred ccCCCcceeeEEEEEEEccCCC----eEEeCcccCC-cc---cc---ccCH---hHHhh------hhHHHHHhcCccccc
Q 020346 214 TKSGRGKHTTRHVSLLPLSGGG----YLADTPGFNQ-PS---LL---KVTK---QSLAQ------TFPEIKEMLKANEPA 273 (327)
Q Consensus 214 ~~~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~-~~---l~---~~~~---~~l~~------~~~~~~~~LSgGq~q 273 (327)
... .+..++|+||++.. .+.|+..+.. .. .. .... .++.. ........||+||+|
T Consensus 76 ~~~-----~~~~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~q 150 (265)
T PRK10253 76 SKE-----VARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQ 150 (265)
T ss_pred HHH-----HhhheEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHH
Confidence 221 34568999997532 2223221110 00 00 0000 00000 001112349999999
Q ss_pred cccccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 274 KCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 274 ~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
|+.+++++ +..|.++|+|+| .-.+...+++.++..
T Consensus 151 rv~laral-~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~ 191 (265)
T PRK10253 151 RAWIAMVL-AQETAIMLLDEPTTWLDISHQIDLLELLSELNR 191 (265)
T ss_pred HHHHHHHH-hcCCCEEEEeCccccCCHHHHHHHHHHHHHHHH
Confidence 99999999 999999999965 455556666666643
|
|
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.1e-20 Score=172.74 Aligned_cols=157 Identities=13% Similarity=0.210 Sum_probs=107.0
Q ss_pred CCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccc
Q 020346 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (327)
Q Consensus 136 ~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~ 214 (327)
.++.+.++|++..+++++++.+ +|++++|+|+||+|||||+++|+| +++|++|+|+++|.++...+.
T Consensus 7 ~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G------------l~~~~~G~i~~~g~~~~~~~~ 74 (255)
T PRK11300 7 SVSGLMMRFGGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTG------------FYKPTGGTILLRGQHIEGLPG 74 (255)
T ss_pred EEeeEEEEECCEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhC------------CcCCCcceEEECCEECCCCCH
Confidence 4567777887778999999998 999999999999999999999999 899999999999998765432
Q ss_pred cCCCcceeeEEEEEEEccCCC----eEEeCcccCCc---------c------ccccC---HhH---------HhhhhHHH
Q 020346 215 KSGRGKHTTRHVSLLPLSGGG----YLADTPGFNQP---------S------LLKVT---KQS---------LAQTFPEI 263 (327)
Q Consensus 215 ~~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~---------~------l~~~~---~~~---------l~~~~~~~ 263 (327)
... .+..++++||.+.. ++.|+..+... . ..... ... +.......
T Consensus 75 ~~~----~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~ 150 (255)
T PRK11300 75 HQI----ARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQ 150 (255)
T ss_pred HHH----HhcCeEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCC
Confidence 111 23457888887522 22222211000 0 00000 000 11111111
Q ss_pred HHhcCccccccccccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 264 KEMLKANEPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 264 ~~~LSgGq~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
...||+||+||+.+++++ +.+|.++|+|+| ...+.+.+++.++.+
T Consensus 151 ~~~LS~G~~qrv~la~al-~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~ 201 (255)
T PRK11300 151 AGNLAYGQQRRLEIARCM-VTQPEILMLDEPAAGLNPKETKELDELIAELRN 201 (255)
T ss_pred hhhCCHHHHHHHHHHHHH-hcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHh
Confidence 234999999999999999 999999999965 455566666766644
|
|
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.3e-20 Score=174.42 Aligned_cols=158 Identities=16% Similarity=0.236 Sum_probs=107.0
Q ss_pred CceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccccc
Q 020346 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (327)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~ 215 (327)
++.+..+|+...+++++++.+ +|++++|+|+||||||||+++|+| +++|++|+|+++|.++...+..
T Consensus 27 ~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~G------------l~~p~~G~i~i~g~~~~~~~~~ 94 (269)
T cd03294 27 KEEILKKTGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINR------------LIEPTSGKVLIDGQDIAAMSRK 94 (269)
T ss_pred hhhhhhhcCCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhc------------CCCCCCeEEEECCEEccccChh
Confidence 456777788888999999998 999999999999999999999999 8999999999999987654322
Q ss_pred CCCcceeeEEEEEEEccCCC----eEEeCcccCCccccccCH----hHHhhhh---------HHHHHhcCcccccccccc
Q 020346 216 SGRGKHTTRHVSLLPLSGGG----YLADTPGFNQPSLLKVTK----QSLAQTF---------PEIKEMLKANEPAKCSFN 278 (327)
Q Consensus 216 ~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~~l~~~~~----~~l~~~~---------~~~~~~LSgGq~q~~~~~ 278 (327)
.. .....+.++++||.+.. ++.|+..+... ...... ....+.. ......||+||+||+.++
T Consensus 95 ~~-~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lA 172 (269)
T cd03294 95 EL-RELRRKKISMVFQSFALLPHRTVLENVAFGLE-VQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLA 172 (269)
T ss_pred hh-hhhhcCcEEEEecCcccCCCCcHHHHHHHHHH-hcCCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHH
Confidence 10 00013468999997532 12222111000 000000 0001000 111123999999999999
Q ss_pred ccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 279 NCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 279 ~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
+++ +.+|.++++|+| ...+.+.+++.++..
T Consensus 173 ral-~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~ 208 (269)
T cd03294 173 RAL-AVDPDILLMDEAFSALDPLIRREMQDELLRLQA 208 (269)
T ss_pred HHH-hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHH
Confidence 999 999999999965 455666666666643
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.7e-20 Score=169.99 Aligned_cols=158 Identities=18% Similarity=0.175 Sum_probs=106.8
Q ss_pred CCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccc
Q 020346 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (327)
Q Consensus 136 ~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~ 214 (327)
.++.+.++|.+..+++++++.+ +|++++|+|+||+|||||+++|+| +++|++|+|+++|.++.....
T Consensus 4 ~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G------------~~~~~~G~i~~~g~~~~~~~~ 71 (242)
T PRK11124 4 QLNGINCFYGAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNL------------LEMPRSGTLNIAGNHFDFSKT 71 (242)
T ss_pred EEEeeEEEECCeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhC------------CCCCCceEEEECCEecccccc
Confidence 3567788887778999999998 999999999999999999999999 889999999999987631110
Q ss_pred -cCCCcceeeEEEEEEEccCCC----eEEeCcccCC-----cc-----------ccccCHhHHhhhhHHHHHhcCccccc
Q 020346 215 -KSGRGKHTTRHVSLLPLSGGG----YLADTPGFNQ-----PS-----------LLKVTKQSLAQTFPEIKEMLKANEPA 273 (327)
Q Consensus 215 -~~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~-----~~-----------l~~~~~~~l~~~~~~~~~~LSgGq~q 273 (327)
........++.++|+||.+.. ++.++..+.. .. +..+......+. ....|||||+|
T Consensus 72 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~---~~~~LS~G~~q 148 (242)
T PRK11124 72 PSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADR---FPLHLSGGQQQ 148 (242)
T ss_pred cchhhHHHHHhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhC---ChhhCCHHHHH
Confidence 000001135678999997532 2222221100 00 000011111111 12349999999
Q ss_pred cccccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 274 KCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 274 ~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
|+++++++ +.+|.++++|+| ...+.+.++++++..
T Consensus 149 rv~laral-~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~ 189 (242)
T PRK11124 149 RVAIARAL-MMEPQVLLFDEPTAALDPEITAQIVSIIRELAE 189 (242)
T ss_pred HHHHHHHH-hcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHH
Confidence 99999999 899999999955 455666667776644
|
|
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.2e-20 Score=176.27 Aligned_cols=155 Identities=15% Similarity=0.175 Sum_probs=107.8
Q ss_pred CCceeeccCcc-----hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceee
Q 020346 136 GYEPLFCSVES-----KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRV 209 (327)
Q Consensus 136 ~~~~~~~s~~~-----~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v 209 (327)
.++.+.++|.. ..+++++++.+ +|++++|+|+||||||||+++|+| +++|++|+|+++|.++
T Consensus 4 ~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~G------------l~~p~~G~i~~~g~~~ 71 (287)
T PRK13637 4 KIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNG------------LLKPTSGKIIIDGVDI 71 (287)
T ss_pred EEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhc------------CCCCCccEEEECCEEC
Confidence 35667777753 36899999998 999999999999999999999999 8999999999999988
Q ss_pred ccccccCCCcceeeEEEEEEEccCCC-----eEEeCcccCCc--c-------------ccccCHh--HHhhhhHHHHHhc
Q 020346 210 GEVSTKSGRGKHTTRHVSLLPLSGGG-----YLADTPGFNQP--S-------------LLKVTKQ--SLAQTFPEIKEML 267 (327)
Q Consensus 210 ~~~s~~~~~g~~tt~~i~~v~q~~~~-----~i~Dtpg~~~~--~-------------l~~~~~~--~l~~~~~~~~~~L 267 (327)
...+... ...++.++|+||++.. ++.|+..+... . ++.+.+. ...+.. ...|
T Consensus 72 ~~~~~~~---~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~---~~~L 145 (287)
T PRK13637 72 TDKKVKL---SDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKS---PFEL 145 (287)
T ss_pred CCcCccH---HHHhhceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCC---cccC
Confidence 6532110 1145789999997532 22222222100 0 0001110 111111 2349
Q ss_pred CccccccccccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 268 KANEPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 268 SgGq~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
||||+||+.+++++ +.+|.++|+|+| .....+.++++++..
T Consensus 146 SgGq~qrv~iAraL-~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~ 192 (287)
T PRK13637 146 SGGQKRRVAIAGVV-AMEPKILILDEPTAGLDPKGRDEILNKIKELHK 192 (287)
T ss_pred CHHHHHHHHHHHHH-HcCCCEEEEECCccCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999 999999999955 455566677777654
|
|
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=99.79 E-value=8.6e-20 Score=165.54 Aligned_cols=158 Identities=17% Similarity=0.202 Sum_probs=106.0
Q ss_pred CceeeccCcch----hhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecc
Q 020346 137 YEPLFCSVESK----LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (327)
Q Consensus 137 ~~~~~~s~~~~----~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~ 211 (327)
++.+.++|.+. .+++++++.+ +|++++|+|+||||||||+++|+| +++|++|+|.++|.++..
T Consensus 4 ~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G------------~~~~~~G~i~~~g~~~~~ 71 (228)
T cd03257 4 VKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILG------------LLKPTSGSIIFDGKDLLK 71 (228)
T ss_pred EEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhC------------CCCCCCceEEECCEEccc
Confidence 45677777654 6899999998 999999999999999999999999 889999999999998765
Q ss_pred ccccCCCcceeeEEEEEEEccCCC------eEEeCcccC--C--ccccccCHh----HHhhhh-------HHHHHhcCcc
Q 020346 212 VSTKSGRGKHTTRHVSLLPLSGGG------YLADTPGFN--Q--PSLLKVTKQ----SLAQTF-------PEIKEMLKAN 270 (327)
Q Consensus 212 ~s~~~~~g~~tt~~i~~v~q~~~~------~i~Dtpg~~--~--~~l~~~~~~----~l~~~~-------~~~~~~LSgG 270 (327)
.+... ....++.++|++|.+.. ++.|+..+. . ......... ++...+ ......||||
T Consensus 72 ~~~~~--~~~~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G 149 (228)
T cd03257 72 LSRRL--RKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGG 149 (228)
T ss_pred cchhh--HHHhhccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHH
Confidence 44210 01145679999997521 122222110 0 000000000 111111 1112349999
Q ss_pred ccccccccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 271 EPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 271 q~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
|+||+.+++++ +.+|.++++|+| ...+.+.+++.++..
T Consensus 150 ~~qrv~laral-~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~ 193 (228)
T cd03257 150 QRQRVAIARAL-ALNPKLLIADEPTSALDVSVQAQILDLLKKLQE 193 (228)
T ss_pred HHHHHHHHHHH-hcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999 999999999965 344555566666543
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.5e-20 Score=198.02 Aligned_cols=140 Identities=19% Similarity=0.344 Sum_probs=113.5
Q ss_pred hcCCceeeccCcc---hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceee
Q 020346 134 TWGYEPLFCSVES---KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRV 209 (327)
Q Consensus 134 ~~~~~~~~~s~~~---~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v 209 (327)
++.|+.+.|+|.+ ..+++++++.+ +|+++||||||||||||++-+|.+ +|+|++|.|.+||.++
T Consensus 987 ~I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeR------------fYdp~~G~V~IDg~di 1054 (1228)
T KOG0055|consen 987 DIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLER------------FYDPDAGKVKIDGVDI 1054 (1228)
T ss_pred EEEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHH------------hcCCCCCeEEECCccc
Confidence 3678899999975 46899999998 999999999999999999999998 9999999999999999
Q ss_pred ccccccCCCcceeeEEEEEEEccC---CCeEEeCcccCCccccccCHh------HHhhhhHHHH--------------Hh
Q 020346 210 GEVSTKSGRGKHTTRHVSLLPLSG---GGYLADTPGFNQPSLLKVTKQ------SLAQTFPEIK--------------EM 266 (327)
Q Consensus 210 ~~~s~~~~~g~~tt~~i~~v~q~~---~~~i~Dtpg~~~~~l~~~~~~------~l~~~~~~~~--------------~~ 266 (327)
..+..+ |.++++++|.|+| +.++.|+..+.... ++.+ +++....-+. ..
T Consensus 1055 k~lnl~-----~LR~~i~lVsQEP~LF~~TIrENI~YG~~~---vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~Q 1126 (1228)
T KOG0055|consen 1055 KDLNLK-----WLRKQIGLVSQEPVLFNGTIRENIAYGSEE---VSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQ 1126 (1228)
T ss_pred ccCCHH-----HHHHhcceeccCchhhcccHHHHHhccCCC---CCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCc
Confidence 988764 4899999999997 55777777666211 2222 2222222221 13
Q ss_pred cCccccccccccccccccCCceEEcccH
Q 020346 267 LKANEPAKCSFNNCLHLGEPGCVVKGDW 294 (327)
Q Consensus 267 LSgGq~q~~~~~~~~h~~ep~~~v~~~~ 294 (327)
|||||+||++||+++ +.+|+++|+|+.
T Consensus 1127 LSGGQKQRIAIARAi-lRnPkILLLDEA 1153 (1228)
T KOG0055|consen 1127 LSGGQKQRIAIARAI-LRNPKILLLDEA 1153 (1228)
T ss_pred CCchHHHHHHHHHHH-HcCCCeeeeecc
Confidence 999999999999999 999999999943
|
|
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.9e-20 Score=190.33 Aligned_cols=142 Identities=21% Similarity=0.386 Sum_probs=109.1
Q ss_pred cCCceeeccCcc-hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccc
Q 020346 135 WGYEPLFCSVES-KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV 212 (327)
Q Consensus 135 ~~~~~~~~s~~~-~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~ 212 (327)
+.++.+.++|.+ +.+++++++.+ +|++++|+|+||+|||||+|+|+| +++|++|+|.++|.++.++
T Consensus 335 I~~~~vsf~y~~~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~g------------l~~p~~G~I~i~g~~i~~~ 402 (588)
T PRK13657 335 VEFDDVSFSYDNSRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQR------------VFDPQSGRILIDGTDIRTV 402 (588)
T ss_pred EEEEEEEEEeCCCCceecceeEEECCCCEEEEECCCCCCHHHHHHHHhc------------CcCCCCCEEEECCEEhhhC
Confidence 567788999964 56899999998 999999999999999999999999 9999999999999999888
Q ss_pred cccCCCcceeeEEEEEEEccC---CCeEEeCcccCCccccc---------cCHhHHhhhhHH-----H---HHhcCcccc
Q 020346 213 STKSGRGKHTTRHVSLLPLSG---GGYLADTPGFNQPSLLK---------VTKQSLAQTFPE-----I---KEMLKANEP 272 (327)
Q Consensus 213 s~~~~~g~~tt~~i~~v~q~~---~~~i~Dtpg~~~~~l~~---------~~~~~l~~~~~~-----~---~~~LSgGq~ 272 (327)
+... .+++++|+||++ ++++.|+..+..+.... ....+.-..+|+ + ...|||||+
T Consensus 403 ~~~~-----~r~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~ 477 (588)
T PRK13657 403 TRAS-----LRRNIAVVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGER 477 (588)
T ss_pred CHHH-----HHhheEEEecCcccccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHH
Confidence 7554 678899999986 44556665554322110 111111111110 1 123999999
Q ss_pred ccccccccccccCCceEEcccH
Q 020346 273 AKCSFNNCLHLGEPGCVVKGDW 294 (327)
Q Consensus 273 q~~~~~~~~h~~ep~~~v~~~~ 294 (327)
||+++++++ +.+|.++|+|||
T Consensus 478 QRialARal-l~~~~iliLDEp 498 (588)
T PRK13657 478 QRLAIARAL-LKDPPILILDEA 498 (588)
T ss_pred HHHHHHHHH-hcCCCEEEEeCC
Confidence 999999999 999999999965
|
|
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=5.2e-20 Score=172.57 Aligned_cols=153 Identities=15% Similarity=0.216 Sum_probs=106.4
Q ss_pred CceeeccCc-chhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccc
Q 020346 137 YEPLFCSVE-SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (327)
Q Consensus 137 ~~~~~~s~~-~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~ 214 (327)
++.+.++|. ...+++++++.+ +|++++|+|+||+|||||+++|+| +++|++|+|+++|.++...+.
T Consensus 4 ~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G------------l~~p~~G~i~~~g~~~~~~~~ 71 (274)
T PRK13644 4 LENVSYSYPDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNG------------LLRPQKGKVLVSGIDTGDFSK 71 (274)
T ss_pred EEEEEEEcCCCCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhc------------CCCCCCceEEECCEECCcccc
Confidence 466777884 456999999998 999999999999999999999999 889999999999998765431
Q ss_pred cCCCcceeeEEEEEEEccCCC-----eEEeCcccCCcc---------------ccccCHhHHhhhhHHHHHhcCcccccc
Q 020346 215 KSGRGKHTTRHVSLLPLSGGG-----YLADTPGFNQPS---------------LLKVTKQSLAQTFPEIKEMLKANEPAK 274 (327)
Q Consensus 215 ~~~~g~~tt~~i~~v~q~~~~-----~i~Dtpg~~~~~---------------l~~~~~~~l~~~~~~~~~~LSgGq~q~ 274 (327)
.. ..++.+++++|++.. ++.|+..+.... ++.+.+....+.. ...||+||+||
T Consensus 72 ~~----~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~---~~~LS~G~~qr 144 (274)
T PRK13644 72 LQ----GIRKLVGIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRS---PKTLSGGQGQC 144 (274)
T ss_pred HH----HHHhheEEEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCC---cccCCHHHHHH
Confidence 11 135679999997532 222222111000 0000111111111 23399999999
Q ss_pred ccccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 275 CSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 275 ~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
+.+++++ +.+|.++|+|+| .....+.++++++..
T Consensus 145 v~laral-~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~ 184 (274)
T PRK13644 145 VALAGIL-TMEPECLIFDEVTSMLDPDSGIAVLERIKKLHE 184 (274)
T ss_pred HHHHHHH-HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh
Confidence 9999999 999999999965 355556666666654
|
|
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.5e-20 Score=174.29 Aligned_cols=156 Identities=13% Similarity=0.203 Sum_probs=107.8
Q ss_pred cCCceeeccCc--chhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecc
Q 020346 135 WGYEPLFCSVE--SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (327)
Q Consensus 135 ~~~~~~~~s~~--~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~ 211 (327)
+.++.+.++|. ++.+++++++.+ +|++++|+|+||||||||+++|+| +++|++|+|+++|.++..
T Consensus 8 l~~~nl~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G------------l~~p~~G~I~~~g~~i~~ 75 (271)
T PRK13632 8 IKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTG------------LLKPQSGEIKIDGITISK 75 (271)
T ss_pred EEEEeEEEEcCCCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhc------------CCCCCCceEEECCEecCc
Confidence 34567788884 457899999998 999999999999999999999999 899999999999998754
Q ss_pred ccccCCCcceeeEEEEEEEccCC-----CeEEeCcccCCccccccCHhH-------------HhhhhHHHHHhcCccccc
Q 020346 212 VSTKSGRGKHTTRHVSLLPLSGG-----GYLADTPGFNQPSLLKVTKQS-------------LAQTFPEIKEMLKANEPA 273 (327)
Q Consensus 212 ~s~~~~~g~~tt~~i~~v~q~~~-----~~i~Dtpg~~~~~l~~~~~~~-------------l~~~~~~~~~~LSgGq~q 273 (327)
.+... .++.++|++|++. .++.|+..+... ...+.... +..........||+||+|
T Consensus 76 ~~~~~-----~~~~i~~v~q~~~~~~~~~tv~enl~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~q 149 (271)
T PRK13632 76 ENLKE-----IRKKIGIIFQNPDNQFIGATVEDDIAFGLE-NKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQ 149 (271)
T ss_pred CCHHH-----HhcceEEEEeCHHHhcCcccHHHHHHhHHH-HcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHH
Confidence 33211 4567999998742 122222211100 00011110 000111112349999999
Q ss_pred cccccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 274 KCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 274 ~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
|+.+++++ +.+|.++|+|+| ...+...++++++..
T Consensus 150 rl~laral-~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~ 190 (271)
T PRK13632 150 RVAIASVL-ALNPEIIIFDESTSMLDPKGKREIKKIMVDLRK 190 (271)
T ss_pred HHHHHHHH-HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence 99999999 999999999965 455566666666644
|
|
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=2e-20 Score=173.77 Aligned_cols=154 Identities=17% Similarity=0.220 Sum_probs=106.8
Q ss_pred CceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccccc
Q 020346 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (327)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~ 215 (327)
++.+.++|++..+++++++.+ +|++++|+|+||||||||+++|+| +++|++|+|+++|.++...+..
T Consensus 5 ~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G------------~~~p~~G~i~~~g~~~~~~~~~ 72 (258)
T PRK13548 5 ARNLSVRLGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSG------------ELSPDSGEVRLNGRPLADWSPA 72 (258)
T ss_pred EEeEEEEeCCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhC------------CCCCCCCEEEECCEEcccCCHH
Confidence 456777887778999999998 999999999999999999999999 8899999999999887654332
Q ss_pred CCCcceeeEEEEEEEccCCC----eEEeCcccCCcccc----cc--CHhHHhh------hhHHHHHhcCccccccccccc
Q 020346 216 SGRGKHTTRHVSLLPLSGGG----YLADTPGFNQPSLL----KV--TKQSLAQ------TFPEIKEMLKANEPAKCSFNN 279 (327)
Q Consensus 216 ~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~~l~----~~--~~~~l~~------~~~~~~~~LSgGq~q~~~~~~ 279 (327)
. ..+.++|++|++.. ++.|+..+...... .. ....+.. ........|||||+||+.+++
T Consensus 73 ~-----~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~ 147 (258)
T PRK13548 73 E-----LARRRAVLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLAR 147 (258)
T ss_pred H-----hhhheEEEccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHH
Confidence 1 34578999997532 22333222110000 00 0000000 001112349999999999999
Q ss_pred cccc------cCCceEEcccH------HHHHHHHHHHHHHH
Q 020346 280 CLHL------GEPGCVVKGDW------ERYQYYFQLLDEIR 308 (327)
Q Consensus 280 ~~h~------~ep~~~v~~~~------~r~~~~~~ll~e~~ 308 (327)
++ + .+|.++++|+| ...+.+.++++++.
T Consensus 148 al-~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~ 187 (258)
T PRK13548 148 VL-AQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLA 187 (258)
T ss_pred HH-hcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence 98 6 58999999955 45566667776664
|
|
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.7e-20 Score=173.80 Aligned_cols=155 Identities=17% Similarity=0.280 Sum_probs=106.5
Q ss_pred CCceeeccCc-chhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccc
Q 020346 136 GYEPLFCSVE-SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (327)
Q Consensus 136 ~~~~~~~s~~-~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s 213 (327)
.++.+.++|. ...+++++++.+ +|++++|+|+||+|||||+++|+| +++|++|+|.++|.++...+
T Consensus 5 ~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G------------l~~p~~G~i~~~g~~~~~~~ 72 (277)
T PRK13652 5 ETRDLCYSYSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNG------------ILKPTSGSVLIRGEPITKEN 72 (277)
T ss_pred EEEEEEEEeCCCCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhc------------CCCCCceEEEECCEECCcCC
Confidence 3567788885 456899999998 999999999999999999999999 89999999999999875433
Q ss_pred ccCCCcceeeEEEEEEEccCCCeE-----EeCcccCCccccccCHh-------------HHhhhhHHHHHhcCccccccc
Q 020346 214 TKSGRGKHTTRHVSLLPLSGGGYL-----ADTPGFNQPSLLKVTKQ-------------SLAQTFPEIKEMLKANEPAKC 275 (327)
Q Consensus 214 ~~~~~g~~tt~~i~~v~q~~~~~i-----~Dtpg~~~~~l~~~~~~-------------~l~~~~~~~~~~LSgGq~q~~ 275 (327)
... ....+++++|++...+ .|+..+... ...+... .+..........||+||+||+
T Consensus 73 ~~~-----~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl 146 (277)
T PRK13652 73 IRE-----VRKFVGLVFQNPDDQIFSPTVEQDIAFGPI-NLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRV 146 (277)
T ss_pred HHH-----HHhheEEEecCcccccccccHHHHHHhHHH-HcCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHH
Confidence 211 4567899999753211 121111000 0001110 000000111224999999999
Q ss_pred cccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 276 SFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 276 ~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
.+++|+ +.+|.++|+|+| .-.+.+.+++.++..
T Consensus 147 ~laraL-~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~ 185 (277)
T PRK13652 147 AIAGVI-AMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPE 185 (277)
T ss_pred HHHHHH-HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence 999999 999999999965 355556666666654
|
|
| >COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.3e-19 Score=158.16 Aligned_cols=136 Identities=19% Similarity=0.237 Sum_probs=101.3
Q ss_pred CCceeeccCcchh--hHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccc
Q 020346 136 GYEPLFCSVESKL--GLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV 212 (327)
Q Consensus 136 ~~~~~~~s~~~~~--~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~ 212 (327)
..+.++.+|..+. +++++++.+ +|+.++++||||||||||+|+++| +.+|..|+|.+||.++..-
T Consensus 5 ~~~~~sl~y~g~~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AG------------f~~P~~G~i~l~~r~i~gP 72 (259)
T COG4525 5 NVSHLSLSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAG------------FVTPSRGSIQLNGRRIEGP 72 (259)
T ss_pred ehhheEEecCCcchhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhc------------CcCcccceEEECCEeccCC
Confidence 3456778887665 899999998 899999999999999999999999 9999999999999998765
Q ss_pred cccCCCcceeeEEEEEEEccCCC----eEEeCcccCCccccccCHhH---Hh----------hhhHHHHHhcCccccccc
Q 020346 213 STKSGRGKHTTRHVSLLPLSGGG----YLADTPGFNQPSLLKVTKQS---LA----------QTFPEIKEMLKANEPAKC 275 (327)
Q Consensus 213 s~~~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~~l~~~~~~~---l~----------~~~~~~~~~LSgGq~q~~ 275 (327)
+. .-+.|+|++.. .++|+..|.... ..+.+.. .+ .......-.|||||+||+
T Consensus 73 ga----------ergvVFQ~~~LlPWl~~~dNvafgL~l-~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRv 141 (259)
T COG4525 73 GA----------ERGVVFQNEALLPWLNVIDNVAFGLQL-RGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRV 141 (259)
T ss_pred Cc----------cceeEeccCccchhhHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHhCcccccccceEeecchHHHHH
Confidence 43 23567887644 456776654321 1122211 11 111111223999999999
Q ss_pred cccccccccCCceEEcccHH
Q 020346 276 SFNNCLHLGEPGCVVKGDWE 295 (327)
Q Consensus 276 ~~~~~~h~~ep~~~v~~~~~ 295 (327)
.+++++ .-||+.+++|+|.
T Consensus 142 GiARAL-a~eP~~LlLDEPf 160 (259)
T COG4525 142 GIARAL-AVEPQLLLLDEPF 160 (259)
T ss_pred HHHHHh-hcCcceEeecCch
Confidence 999999 8899999999763
|
|
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.6e-20 Score=192.04 Aligned_cols=143 Identities=19% Similarity=0.322 Sum_probs=109.2
Q ss_pred cCCceeeccCcc--hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecc
Q 020346 135 WGYEPLFCSVES--KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (327)
Q Consensus 135 ~~~~~~~~s~~~--~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~ 211 (327)
+.++.+.++|.+ +.+++++++.+ +|+.++|+|+||+|||||+++|+| +++|++|+|.++|.++..
T Consensus 331 i~~~~v~f~y~~~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~g------------l~~~~~G~I~i~g~~i~~ 398 (571)
T TIGR02203 331 VEFRNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPR------------FYEPDSGQILLDGHDLAD 398 (571)
T ss_pred EEEEEEEEEcCCCCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHh------------ccCCCCCeEEECCEeHHh
Confidence 567888999864 56899999998 999999999999999999999999 999999999999999988
Q ss_pred ccccCCCcceeeEEEEEEEccC---CCeEEeCcccCCc-ccc---------ccCHhHHhhhhH--------HHHHhcCcc
Q 020346 212 VSTKSGRGKHTTRHVSLLPLSG---GGYLADTPGFNQP-SLL---------KVTKQSLAQTFP--------EIKEMLKAN 270 (327)
Q Consensus 212 ~s~~~~~g~~tt~~i~~v~q~~---~~~i~Dtpg~~~~-~l~---------~~~~~~l~~~~~--------~~~~~LSgG 270 (327)
++... .+.+++|+||++ ++++.|+..+..+ ... .....+....+| +-...||||
T Consensus 399 ~~~~~-----~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgG 473 (571)
T TIGR02203 399 YTLAS-----LRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGG 473 (571)
T ss_pred cCHHH-----HHhhceEEccCcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHH
Confidence 87554 678899999986 4455555554432 111 111111111111 111249999
Q ss_pred ccccccccccccccCCceEEcccHH
Q 020346 271 EPAKCSFNNCLHLGEPGCVVKGDWE 295 (327)
Q Consensus 271 q~q~~~~~~~~h~~ep~~~v~~~~~ 295 (327)
|+||+++++|+ +.+|.++++|||.
T Consensus 474 qrQRiaLARal-l~~~~illLDEpt 497 (571)
T TIGR02203 474 QRQRLAIARAL-LKDAPILILDEAT 497 (571)
T ss_pred HHHHHHHHHHH-hcCCCEEEEeCcc
Confidence 99999999999 9999999999663
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=99.78 E-value=8.2e-20 Score=163.77 Aligned_cols=148 Identities=11% Similarity=0.113 Sum_probs=105.1
Q ss_pred CCceeeccCc----chhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCccccccccc---ccccceeecce
Q 020346 136 GYEPLFCSVE----SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFE---PILGSKWFEDQ 207 (327)
Q Consensus 136 ~~~~~~~s~~----~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~---p~~G~i~~~g~ 207 (327)
.++.+.+.|. +..+++++++.+ +|++++|+|+||||||||+++|+| +++ |++|+|+++|.
T Consensus 5 ~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G------------~~~~~~~~~G~i~i~g~ 72 (202)
T cd03233 5 SWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALAN------------RTEGNVSVEGDIHYNGI 72 (202)
T ss_pred EEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcc------------cCCCCCCcceEEEECCE
Confidence 4566777775 346899999998 999999999999999999999999 777 89999999999
Q ss_pred eeccccccCCCcceeeEEEEEEEccCCCeEEeCcccCCccccccCHhHHhhhhHHHHHhcCccccccccccccccccCCc
Q 020346 208 RVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPG 287 (327)
Q Consensus 208 ~v~~~s~~~~~g~~tt~~i~~v~q~~~~~i~Dtpg~~~~~l~~~~~~~l~~~~~~~~~~LSgGq~q~~~~~~~~h~~ep~ 287 (327)
++...+.. .++.++|++|....+ .. ....+++....... .......||+||+||+.+++++ +.+|.
T Consensus 73 ~~~~~~~~------~~~~i~~~~q~~~~~--~~----~tv~~~l~~~~~~~-~~~~~~~LS~Ge~qrl~laral-~~~p~ 138 (202)
T cd03233 73 PYKEFAEK------YPGEIIYVSEEDVHF--PT----LTVRETLDFALRCK-GNEFVRGISGGERKRVSIAEAL-VSRAS 138 (202)
T ss_pred ECccchhh------hcceEEEEecccccC--CC----CcHHHHHhhhhhhc-cccchhhCCHHHHHHHHHHHHH-hhCCC
Confidence 87654321 456789999863111 00 11112221110000 1122344999999999999999 99999
Q ss_pred eEEcccH------HHHHHHHHHHHHHHH
Q 020346 288 CVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 288 ~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
++++|+| ...+.+.++++++..
T Consensus 139 llllDEPt~~LD~~~~~~~~~~l~~~~~ 166 (202)
T cd03233 139 VLCWDNSTRGLDSSTALEILKCIRTMAD 166 (202)
T ss_pred EEEEcCCCccCCHHHHHHHHHHHHHHHH
Confidence 9999955 455566666766644
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.78 E-value=7.2e-20 Score=169.14 Aligned_cols=160 Identities=14% Similarity=0.171 Sum_probs=107.0
Q ss_pred CceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccccc
Q 020346 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (327)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~ 215 (327)
++.+.++|++..+++++++.+ +|++++|+|+||||||||+++|+| +++|++|+|+++|.++...+..
T Consensus 3 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G------------~~~~~~G~i~~~g~~i~~~~~~ 70 (252)
T TIGR03005 3 FSDVTKRFGILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMT------------LEPIDEGQIQVEGEQLYHMPGR 70 (252)
T ss_pred EEEEEEEeCCeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhC------------CCCCCceEEEECCEEccccccc
Confidence 456777887778999999998 999999999999999999999999 8899999999999987654200
Q ss_pred CC--------CcceeeEEEEEEEccCCC----eEEeCcccCCccccccCH-------hH------HhhhhHHHHHhcCcc
Q 020346 216 SG--------RGKHTTRHVSLLPLSGGG----YLADTPGFNQPSLLKVTK-------QS------LAQTFPEIKEMLKAN 270 (327)
Q Consensus 216 ~~--------~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~~l~~~~~-------~~------l~~~~~~~~~~LSgG 270 (327)
.+ .....++.+++++|.+.. ++.|+..+.......+.. .+ +..........||+|
T Consensus 71 ~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G 150 (252)
T TIGR03005 71 NGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGG 150 (252)
T ss_pred cccccccchhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHH
Confidence 00 000135678999997422 222222211000000000 00 001111112349999
Q ss_pred ccccccccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 271 EPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 271 q~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
|+||+++++++ +.+|.++++|+| .-...+.++++++..
T Consensus 151 ~~qrv~laral-~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~ 194 (252)
T TIGR03005 151 QQQRVAIARAL-AMRPKVMLFDEVTSALDPELVGEVLNVIRRLAS 194 (252)
T ss_pred HHHHHHHHHHH-HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence 99999999999 999999999965 345555566666644
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.8e-20 Score=169.25 Aligned_cols=156 Identities=17% Similarity=0.151 Sum_probs=107.5
Q ss_pred CCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccc
Q 020346 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (327)
Q Consensus 136 ~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~ 214 (327)
.++.+.++|++..+++++++.+ +|++++|+|+||||||||+++|+| +++|++|+|+++|.++...+.
T Consensus 9 ~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G------------~~~~~~G~i~~~g~~~~~~~~ 76 (225)
T PRK10247 9 QLQNVGYLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVAS------------LISPTSGTLLFEGEDISTLKP 76 (225)
T ss_pred EEeccEEeeCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhc------------ccCCCCCeEEECCEEcCcCCH
Confidence 3566777787778999999998 999999999999999999999999 889999999999988765432
Q ss_pred cCCCcceeeEEEEEEEccCCC---eEEeCcccCCccc-cccC---HhHHhhhh-------HHHHHhcCcccccccccccc
Q 020346 215 KSGRGKHTTRHVSLLPLSGGG---YLADTPGFNQPSL-LKVT---KQSLAQTF-------PEIKEMLKANEPAKCSFNNC 280 (327)
Q Consensus 215 ~~~~g~~tt~~i~~v~q~~~~---~i~Dtpg~~~~~l-~~~~---~~~l~~~~-------~~~~~~LSgGq~q~~~~~~~ 280 (327)
.. .+..+++++|++.. .+.|+..+..... .... ..++...+ ......||+||+||+.|+++
T Consensus 77 ~~-----~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~lara 151 (225)
T PRK10247 77 EI-----YRQQVSYCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRN 151 (225)
T ss_pred HH-----HHhccEEEecccccccccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHH
Confidence 21 34678999987532 2222221100000 0000 00111110 11123499999999999999
Q ss_pred ccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 281 LHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 281 ~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
+ +.+|.++|+|+| .-.+.+.++++++..
T Consensus 152 l-~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~ 185 (225)
T PRK10247 152 L-QFMPKVLLLDEITSALDESNKHNVNEIIHRYVR 185 (225)
T ss_pred H-hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence 9 999999999965 355566666666643
|
|
| >cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.7e-20 Score=162.58 Aligned_cols=133 Identities=20% Similarity=0.229 Sum_probs=100.6
Q ss_pred CceeeccCcch--hhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccc
Q 020346 137 YEPLFCSVESK--LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (327)
Q Consensus 137 ~~~~~~s~~~~--~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s 213 (327)
++.+.++|... .+++++++.+ +|++++|+|+||+|||||+++|+| +++|++|+|+++|.++...
T Consensus 3 ~~~~~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G------------~~~~~~G~i~~~g~~~~~~- 69 (178)
T cd03247 3 INNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTG------------DLKPQQGEITLDGVPVSDL- 69 (178)
T ss_pred EEEEEEEeCCCCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhc------------cCCCCCCEEEECCEEHHHH-
Confidence 45666777654 6899999998 999999999999999999999999 8899999999999887544
Q ss_pred ccCCCcceeeEEEEEEEccCCCeEEeCcccCCccccccCHhHHhhhhHHHHHhcCccccccccccccccccCCceEEccc
Q 020346 214 TKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGD 293 (327)
Q Consensus 214 ~~~~~g~~tt~~i~~v~q~~~~~i~Dtpg~~~~~l~~~~~~~l~~~~~~~~~~LSgGq~q~~~~~~~~h~~ep~~~v~~~ 293 (327)
... ..+.++|++|.+. +.. ....+++ ...||+||+||+.+++++ +.+|.++++|+
T Consensus 70 ~~~-----~~~~i~~~~q~~~--~~~-----~tv~~~i------------~~~LS~G~~qrv~laral-~~~p~~lllDE 124 (178)
T cd03247 70 EKA-----LSSLISVLNQRPY--LFD-----TTLRNNL------------GRRFSGGERQRLALARIL-LQDAPIVLLDE 124 (178)
T ss_pred HHH-----HHhhEEEEccCCe--eec-----ccHHHhh------------cccCCHHHHHHHHHHHHH-hcCCCEEEEEC
Confidence 111 3557899998531 111 1111221 344999999999999999 99999999996
Q ss_pred H------HHHHHHHHHHHHH
Q 020346 294 W------ERYQYYFQLLDEI 307 (327)
Q Consensus 294 ~------~r~~~~~~ll~e~ 307 (327)
| ...+.+.+++.++
T Consensus 125 P~~~LD~~~~~~l~~~l~~~ 144 (178)
T cd03247 125 PTVGLDPITERQLLSLIFEV 144 (178)
T ss_pred CcccCCHHHHHHHHHHHHHH
Confidence 5 3445555555555
|
The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. |
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.6e-20 Score=169.54 Aligned_cols=157 Identities=13% Similarity=0.218 Sum_probs=108.1
Q ss_pred CCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccc
Q 020346 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (327)
Q Consensus 136 ~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~ 214 (327)
.++.+.++|++..+++++++.+ +|++++|+|+||+|||||+++|+| +++|++|+|.++|.++...+.
T Consensus 7 ~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G------------~~~p~~G~i~~~g~~~~~~~~ 74 (237)
T PRK11614 7 SFDKVSAHYGKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCG------------DPRATSGRIVFDGKDITDWQT 74 (237)
T ss_pred EEEeEEEeeCCceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcC------------CCCCCCceEEECCEecCCCCH
Confidence 4567777887778999999998 999999999999999999999999 899999999999998765432
Q ss_pred cCCCcceeeEEEEEEEccCCC----eEEeCcccCCc--ccccc--CHhHHhhhhH-------HHHHhcCccccccccccc
Q 020346 215 KSGRGKHTTRHVSLLPLSGGG----YLADTPGFNQP--SLLKV--TKQSLAQTFP-------EIKEMLKANEPAKCSFNN 279 (327)
Q Consensus 215 ~~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~--~l~~~--~~~~l~~~~~-------~~~~~LSgGq~q~~~~~~ 279 (327)
.. ...+.+++++|+... ++.|+..+... ..... ....+...++ .....||+||+||+.+++
T Consensus 75 ~~----~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~ 150 (237)
T PRK11614 75 AK----IMREAVAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGR 150 (237)
T ss_pred HH----HHHhCEEEeccCcccCCCCcHHHHHHHhhhccChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHH
Confidence 11 134568999987532 22222211100 00000 0011111111 112349999999999999
Q ss_pred cccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 280 CLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 280 ~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
++ +.+|.++++|+| ...+.+.++++++.+
T Consensus 151 al-~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~ 185 (237)
T PRK11614 151 AL-MSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLRE 185 (237)
T ss_pred HH-HhCCCEEEEcCccccCCHHHHHHHHHHHHHHHH
Confidence 99 999999999965 455556666666644
|
|
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=99.78 E-value=7.7e-20 Score=167.56 Aligned_cols=156 Identities=17% Similarity=0.177 Sum_probs=105.0
Q ss_pred CceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCccccccc--ccccccceeecceeecccc
Q 020346 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNW--FEPILGSKWFEDQRVGEVS 213 (327)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~--~~p~~G~i~~~g~~v~~~s 213 (327)
++.+.++|++..+++++++.+ +|++++|+|+||||||||+++|+| + ++|++|+|+++|.++...+
T Consensus 3 ~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G------------l~~~~~~~G~i~~~g~~~~~~~ 70 (243)
T TIGR01978 3 IKDLHVSVEDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAG------------HPSYEVTSGTILFKGQDLLELE 70 (243)
T ss_pred EeeEEEEECCEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhC------------CCCCCCCcceEEECCEecCCCC
Confidence 466778887778999999998 999999999999999999999999 6 4799999999999876544
Q ss_pred ccCCCcceeeEEEEEEEccCCCe----EEeCcccCCcccc------ccCH----hHHhhh-----h-HHH----HH-hcC
Q 020346 214 TKSGRGKHTTRHVSLLPLSGGGY----LADTPGFNQPSLL------KVTK----QSLAQT-----F-PEI----KE-MLK 268 (327)
Q Consensus 214 ~~~~~g~~tt~~i~~v~q~~~~~----i~Dtpg~~~~~l~------~~~~----~~l~~~-----~-~~~----~~-~LS 268 (327)
.... .+..+++++|.+..+ +.++..+...... .... ..+... + +.. .. .||
T Consensus 71 ~~~~----~~~~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS 146 (243)
T TIGR01978 71 PDER----ARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFS 146 (243)
T ss_pred HHHh----hccceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcC
Confidence 2211 234588899875321 1111111000000 0000 001100 0 111 12 399
Q ss_pred ccccccccccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 269 ANEPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 269 gGq~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
+||+||+.|++++ +.+|.++++|+| ...+.+.+++.++..
T Consensus 147 ~G~~qrl~la~al-~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~ 192 (243)
T TIGR01978 147 GGEKKRNEILQMA-LLEPKLAILDEIDSGLDIDALKIVAEGINRLRE 192 (243)
T ss_pred HHHHHHHHHHHHH-hcCCCEEEecCCcccCCHHHHHHHHHHHHHHHH
Confidence 9999999999999 999999999965 355566667776644
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.6e-20 Score=172.59 Aligned_cols=156 Identities=17% Similarity=0.207 Sum_probs=109.6
Q ss_pred CCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccc
Q 020346 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (327)
Q Consensus 136 ~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~ 214 (327)
.++.+.++|.+..+++++++.+ +|++++|+|+||+|||||+++|+| +++|++|+|+++|.++...+.
T Consensus 3 ~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G------------~~~~~~G~i~~~g~~~~~~~~ 70 (256)
T TIGR03873 3 RLSRVSWSAGGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAG------------ALRPDAGTVDLAGVDLHGLSR 70 (256)
T ss_pred eEEeEEEEECCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcC------------CCCCCCCEEEECCEEcccCCH
Confidence 3567778888778999999998 999999999999999999999999 889999999999998766543
Q ss_pred cCCCcceeeEEEEEEEccCC----CeEEeCcccCCcc---cccc----CHhHHhhhhH-----H----HHHhcCcccccc
Q 020346 215 KSGRGKHTTRHVSLLPLSGG----GYLADTPGFNQPS---LLKV----TKQSLAQTFP-----E----IKEMLKANEPAK 274 (327)
Q Consensus 215 ~~~~g~~tt~~i~~v~q~~~----~~i~Dtpg~~~~~---l~~~----~~~~l~~~~~-----~----~~~~LSgGq~q~ 274 (327)
.. .++.++|++|.+. .++.++..+.... .... ....+..... + ....||+||+||
T Consensus 71 ~~-----~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr 145 (256)
T TIGR03873 71 RA-----RARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQR 145 (256)
T ss_pred HH-----HhhheEEecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHH
Confidence 22 3456899998753 2233333221100 0000 0001111111 1 122399999999
Q ss_pred ccccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 275 CSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 275 ~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
+.+++++ +.+|.++++|+| ...+.+.++++++..
T Consensus 146 l~la~al-~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~ 185 (256)
T TIGR03873 146 VHVARAL-AQEPKLLLLDEPTNHLDVRAQLETLALVRELAA 185 (256)
T ss_pred HHHHHHH-hcCCCEEEEcCccccCCHHHHHHHHHHHHHHHh
Confidence 9999999 999999999965 456666677777654
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.3e-20 Score=174.66 Aligned_cols=130 Identities=19% Similarity=0.307 Sum_probs=105.0
Q ss_pred hhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcceeeEEE
Q 020346 148 LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHV 226 (327)
Q Consensus 148 ~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~tt~~i 226 (327)
-+++++++.+ .|++.+|+|-||||||||+++|.+ +++|++|+|+++|.++..++.+.- ....++.+
T Consensus 42 vGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~Nr------------Liept~G~ilv~g~di~~~~~~~L-r~~Rr~~~ 108 (386)
T COG4175 42 VGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNR------------LIEPTRGEILVDGKDIAKLSAAEL-RELRRKKI 108 (386)
T ss_pred EeeccceeeecCCeEEEEEecCCCCHHHHHHHHhc------------cCCCCCceEEECCcchhcCCHHHH-HHHHhhhh
Confidence 3678888887 899999999999999999999999 999999999999999998876542 22345678
Q ss_pred EEEEccCCC----eEEeCcccCCc---------------cccccCHhHHhhhhHHHHHhcCccccccccccccccccCCc
Q 020346 227 SLLPLSGGG----YLADTPGFNQP---------------SLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPG 287 (327)
Q Consensus 227 ~~v~q~~~~----~i~Dtpg~~~~---------------~l~~~~~~~l~~~~~~~~~~LSgGq~q~~~~~~~~h~~ep~ 287 (327)
+||+|.++. ++.|+.+|... .++.+.+....+.+|.. |||||+||+.+|+++ ..+|+
T Consensus 109 sMVFQ~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~e---LSGGMqQRVGLARAl-a~~~~ 184 (386)
T COG4175 109 SMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPNE---LSGGMQQRVGLARAL-ANDPD 184 (386)
T ss_pred hhhhhhhccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCccc---ccchHHHHHHHHHHH-ccCCC
Confidence 999998644 66777776532 13334445555666666 999999999999999 99999
Q ss_pred eEEcccH
Q 020346 288 CVVKGDW 294 (327)
Q Consensus 288 ~~v~~~~ 294 (327)
++++|++
T Consensus 185 IlLMDEa 191 (386)
T COG4175 185 ILLMDEA 191 (386)
T ss_pred EEEecCc
Confidence 9999954
|
|
| >cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.4e-20 Score=163.44 Aligned_cols=138 Identities=15% Similarity=0.210 Sum_probs=98.3
Q ss_pred ceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccC
Q 020346 138 EPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKS 216 (327)
Q Consensus 138 ~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~ 216 (327)
+.+.++| +++++++.+ +|++++|+|+||+|||||+++|+| +++|++|+|+++|.++...+...
T Consensus 8 ~~l~~~~----~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G------------~~~~~~G~i~~~g~~~~~~~~~~ 71 (182)
T cd03215 8 RGLSVKG----AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFG------------LRPPASGEITLDGKPVTRRSPRD 71 (182)
T ss_pred eccEEEe----eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhC------------CCCCCCceEEECCEECCccCHHH
Confidence 4444555 789999998 899999999999999999999999 89999999999998876543211
Q ss_pred CCcceeeEEEEEEEccCCCeEEeCcccCCccccccCHhHHhhhhHHHHHhcCccccccccccccccccCCceEEcccH--
Q 020346 217 GRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDW-- 294 (327)
Q Consensus 217 ~~g~~tt~~i~~v~q~~~~~i~Dtpg~~~~~l~~~~~~~l~~~~~~~~~~LSgGq~q~~~~~~~~h~~ep~~~v~~~~-- 294 (327)
. .++.++|++|++.. +.+. ...+..+... +.. .||+||+||+++++++ +.+|.++++|+|
T Consensus 72 ~----~~~~i~~~~q~~~~-----~~~~----~~~t~~e~l~-~~~---~LS~G~~qrl~la~al-~~~p~llllDEP~~ 133 (182)
T cd03215 72 A----IRAGIAYVPEDRKR-----EGLV----LDLSVAENIA-LSS---LLSGGNQQKVVLARWL-ARDPRVLILDEPTR 133 (182)
T ss_pred H----HhCCeEEecCCccc-----Cccc----CCCcHHHHHH-HHh---hcCHHHHHHHHHHHHH-ccCCCEEEECCCCc
Confidence 1 34568999985310 0111 0111111111 111 1999999999999999 999999999955
Q ss_pred ----HHHHHHHHHHHHHHH
Q 020346 295 ----ERYQYYFQLLDEIRI 309 (327)
Q Consensus 295 ----~r~~~~~~ll~e~~~ 309 (327)
...+...+++.++..
T Consensus 134 ~LD~~~~~~l~~~l~~~~~ 152 (182)
T cd03215 134 GVDVGAKAEIYRLIRELAD 152 (182)
T ss_pred CCCHHHHHHHHHHHHHHHH
Confidence 455566666666643
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=6.8e-20 Score=170.10 Aligned_cols=147 Identities=18% Similarity=0.241 Sum_probs=102.0
Q ss_pred CceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccccc
Q 020346 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (327)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~ 215 (327)
++.+.++|++..+++++++.+ +|++++|+|+||||||||+++|+| +++|++|+|+++|.++....
T Consensus 4 ~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G------------l~~p~~G~i~~~g~~~~~~~-- 69 (255)
T PRK11248 4 ISHLYADYGGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAG------------FVPYQHGSITLDGKPVEGPG-- 69 (255)
T ss_pred EEEEEEEeCCeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhC------------CCCCCCcEEEECCEECCCCC--
Confidence 456777787777899999998 999999999999999999999999 88999999999998875321
Q ss_pred CCCcceeeEEEEEEEccCCC----eEEeCcccCCccccccCH-------hHHhh------hhHHHHHhcCcccccccccc
Q 020346 216 SGRGKHTTRHVSLLPLSGGG----YLADTPGFNQPSLLKVTK-------QSLAQ------TFPEIKEMLKANEPAKCSFN 278 (327)
Q Consensus 216 ~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~~l~~~~~-------~~l~~------~~~~~~~~LSgGq~q~~~~~ 278 (327)
..+++++|.+.. ++.++..+... ...+.. .++.. ........|||||+||+.++
T Consensus 70 --------~~~~~v~q~~~~~~~~tv~e~l~~~~~-~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~la 140 (255)
T PRK11248 70 --------AERGVVFQNEGLLPWRNVQDNVAFGLQ-LAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIA 140 (255)
T ss_pred --------CcEEEEeCCCccCCCCcHHHHHHhHHH-HcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHH
Confidence 237889987532 22222211100 000000 00000 00111234999999999999
Q ss_pred ccccccCCceEEcccH------HHHHHHHHHHHHH
Q 020346 279 NCLHLGEPGCVVKGDW------ERYQYYFQLLDEI 307 (327)
Q Consensus 279 ~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~ 307 (327)
+++ +.+|.++++|+| .....+.++++++
T Consensus 141 ral-~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~ 174 (255)
T PRK11248 141 RAL-AANPQLLLLDEPFGALDAFTREQMQTLLLKL 174 (255)
T ss_pred HHH-hcCCCEEEEeCCCccCCHHHHHHHHHHHHHH
Confidence 999 999999999965 3555555666665
|
|
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.2e-19 Score=163.09 Aligned_cols=151 Identities=18% Similarity=0.237 Sum_probs=101.4
Q ss_pred CceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccccc
Q 020346 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (327)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~ 215 (327)
++.+.++|++.. .++++.+ +|++++|+|+||||||||+++|+| +++|++|+|+++|.++...+.
T Consensus 3 ~~~l~~~~~~~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~g------------l~~~~~G~i~~~g~~~~~~~~- 67 (211)
T cd03298 3 LDKIRFSYGEQP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAG------------FETPQSGRVLINGVDVTAAPP- 67 (211)
T ss_pred EEeEEEEeCCEe--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhC------------CCCCCCceEEECCEEcCcCCH-
Confidence 456667776543 2888887 999999999999999999999999 899999999999998765432
Q ss_pred CCCcceeeEEEEEEEccCCC----eEEeCcccCCc-cc--cccCHhHHhhh---------hHHHHHhcCccccccccccc
Q 020346 216 SGRGKHTTRHVSLLPLSGGG----YLADTPGFNQP-SL--LKVTKQSLAQT---------FPEIKEMLKANEPAKCSFNN 279 (327)
Q Consensus 216 ~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~-~l--~~~~~~~l~~~---------~~~~~~~LSgGq~q~~~~~~ 279 (327)
..+.+++++|++.. ++.|+..+... .. .......+... .......||+||+||+.+++
T Consensus 68 ------~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~ 141 (211)
T cd03298 68 ------ADRPVSMLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALAR 141 (211)
T ss_pred ------hHccEEEEecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHH
Confidence 23568999997532 22233221110 00 00000011110 11112349999999999999
Q ss_pred cccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 280 CLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 280 ~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
++ +.+|.++++|+| .-.+.+.+++.++..
T Consensus 142 al-~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~ 176 (211)
T cd03298 142 VL-VRDKPVLLLDEPFAALDPALRAEMLDLVLDLHA 176 (211)
T ss_pred HH-hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH
Confidence 99 899999999965 355556666666543
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13543 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.9e-20 Score=166.44 Aligned_cols=151 Identities=14% Similarity=0.117 Sum_probs=106.1
Q ss_pred cCCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccc
Q 020346 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (327)
Q Consensus 135 ~~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s 213 (327)
+.++.+.++|.+..+++++++.+ +|++++|+|+||+|||||+++|+| +++|++|+|+++|.++...
T Consensus 12 l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G------------~~~~~~G~i~~~g~~i~~~- 78 (214)
T PRK13543 12 LAAHALAFSRNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAG------------LLHVESGQIQIDGKTATRG- 78 (214)
T ss_pred EEEeeEEEecCCceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhC------------CCCCCCeeEEECCEEccch-
Confidence 34567778887778999999998 999999999999999999999999 8999999999999877532
Q ss_pred ccCCCcceeeEEEEEEEccCCC----eEEeCcccC----Ccc--------ccccCHhHHhhhhHHHHHhcCccccccccc
Q 020346 214 TKSGRGKHTTRHVSLLPLSGGG----YLADTPGFN----QPS--------LLKVTKQSLAQTFPEIKEMLKANEPAKCSF 277 (327)
Q Consensus 214 ~~~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~----~~~--------l~~~~~~~l~~~~~~~~~~LSgGq~q~~~~ 277 (327)
. ..+.+++++|.+.. ++.|+..+. ... +..+......+. ....||+||+||+.+
T Consensus 79 --~-----~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---~~~~LS~G~~qrv~l 148 (214)
T PRK13543 79 --D-----RSRFMAYLGHLPGLKADLSTLENLHFLCGLHGRRAKQMPGSALAIVGLAGYEDT---LVRQLSAGQKKRLAL 148 (214)
T ss_pred --h-----hhhceEEeecCcccccCCcHHHHHHHHHHhcCCcHHHHHHHHHHHcCChhhccC---ChhhCCHHHHHHHHH
Confidence 1 23468899886422 122221110 000 000111111111 123499999999999
Q ss_pred cccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 278 NNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 278 ~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
++++ +.+|.++++|+| ...+.+.+++.++..
T Consensus 149 aral-~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~ 185 (214)
T PRK13543 149 ARLW-LSPAPLWLLDEPYANLDLEGITLVNRMISAHLR 185 (214)
T ss_pred HHHH-hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh
Confidence 9999 999999999955 455666677776644
|
|
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=99.78 E-value=5.7e-20 Score=166.14 Aligned_cols=155 Identities=16% Similarity=0.257 Sum_probs=105.6
Q ss_pred CCceeeccCcc--hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccc
Q 020346 136 GYEPLFCSVES--KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV 212 (327)
Q Consensus 136 ~~~~~~~s~~~--~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~ 212 (327)
.++.+.++|.+ ..+++++++.+ +|++++|+||||+|||||+++|+| +.+|++|+|+++|.++...
T Consensus 4 ~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G------------~~~~~~G~i~~~g~~~~~~ 71 (220)
T cd03245 4 EFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAG------------LYKPTSGSVLLDGTDIRQL 71 (220)
T ss_pred EEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhc------------CcCCCCCeEEECCEEhHHC
Confidence 35667777764 46899999998 999999999999999999999999 8899999999999887644
Q ss_pred cccCCCcceeeEEEEEEEccCCC---eEEeCcccCCccc---------cccCHhHHhhhhHH--------HHHhcCcccc
Q 020346 213 STKSGRGKHTTRHVSLLPLSGGG---YLADTPGFNQPSL---------LKVTKQSLAQTFPE--------IKEMLKANEP 272 (327)
Q Consensus 213 s~~~~~g~~tt~~i~~v~q~~~~---~i~Dtpg~~~~~l---------~~~~~~~l~~~~~~--------~~~~LSgGq~ 272 (327)
+... .++.+++++|.+.. .+.|+..+..... ..+...++.+.++. ....|||||+
T Consensus 72 ~~~~-----~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~ 146 (220)
T cd03245 72 DPAD-----LRRNIGYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQR 146 (220)
T ss_pred CHHH-----HHhhEEEeCCCCccccchHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHH
Confidence 3221 34578999997532 1222221111000 00111111111110 0125999999
Q ss_pred ccccccccccccCCceEEcccH------HHHHHHHHHHHHHH
Q 020346 273 AKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIR 308 (327)
Q Consensus 273 q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~ 308 (327)
||+.+++++ +.+|.++|+|+| ...+...++++++.
T Consensus 147 qrl~la~al-~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~ 187 (220)
T cd03245 147 QAVALARAL-LNDPPILLLDEPTSAMDMNSEERLKERLRQLL 187 (220)
T ss_pred HHHHHHHHH-hcCCCEEEEeCccccCCHHHHHHHHHHHHHhc
Confidence 999999999 899999999966 34455556666553
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.3e-19 Score=173.64 Aligned_cols=161 Identities=18% Similarity=0.232 Sum_probs=107.6
Q ss_pred cCCceeeccCcc-----hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeeccee
Q 020346 135 WGYEPLFCSVES-----KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQR 208 (327)
Q Consensus 135 ~~~~~~~~s~~~-----~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~ 208 (327)
+.++.+.++|.. ..+++++++.+ +|++++|+|+||||||||+++|+| +++|++|+|+++|.+
T Consensus 22 l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~G------------l~~p~~G~I~i~g~~ 89 (320)
T PRK13631 22 LRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNG------------LIKSKYGTIQVGDIY 89 (320)
T ss_pred EEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhC------------CCCCCCCeEEECCEE
Confidence 456778888864 25899999998 999999999999999999999999 999999999999988
Q ss_pred ecccc-----------ccCCCcceeeEEEEEEEccCCCeEE-----eCcccCCccccccCHhHH-------hhh------
Q 020346 209 VGEVS-----------TKSGRGKHTTRHVSLLPLSGGGYLA-----DTPGFNQPSLLKVTKQSL-------AQT------ 259 (327)
Q Consensus 209 v~~~s-----------~~~~~g~~tt~~i~~v~q~~~~~i~-----Dtpg~~~~~l~~~~~~~l-------~~~------ 259 (327)
+.... .........++.+++++|++...+. ++..+..... ....... ...
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~-~~~~~~~~~~~~~~l~~~gL~~~ 168 (320)
T PRK13631 90 IGDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVAL-GVKKSEAKKLAKFYLNKMGLDDS 168 (320)
T ss_pred cccccccccccccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhc-CCCHHHHHHHHHHHHHHcCCChh
Confidence 75420 0000011246789999997532221 2222211000 0111100 000
Q ss_pred -hHHHHHhcCccccccccccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 260 -FPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 260 -~~~~~~~LSgGq~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
.......|||||+||+++++++ +.+|.++|+|+| ...+.+.+++.++..
T Consensus 169 ~~~~~~~~LSgGqkqRvaiAraL-~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~ 224 (320)
T PRK13631 169 YLERSPFGLSGGQKRRVAIAGIL-AIQPEILIFDEPTAGLDPKGEHEMMQLILDAKA 224 (320)
T ss_pred HhcCCcccCCHHHHHHHHHHHHH-HcCCCEEEEECCccCCCHHHHHHHHHHHHHHHH
Confidence 0011123999999999999999 999999999965 455555566666543
|
|
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=99.77 E-value=7.8e-20 Score=167.19 Aligned_cols=153 Identities=17% Similarity=0.267 Sum_probs=104.6
Q ss_pred CceeeccCcc--hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccc
Q 020346 137 YEPLFCSVES--KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (327)
Q Consensus 137 ~~~~~~s~~~--~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s 213 (327)
++.+.++|.+ ..+++++++.+ +|++++|+|+||+|||||+++|+| +++|++|+|+++|.++...+
T Consensus 3 ~~~l~~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G------------l~~~~~G~i~~~g~~~~~~~ 70 (237)
T cd03252 3 FEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQR------------FYVPENGRVLVDGHDLALAD 70 (237)
T ss_pred EEEEEEecCCCCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhc------------CcCCCCCEEEECCeehHhcC
Confidence 4567777753 46899999998 999999999999999999999999 89999999999998876543
Q ss_pred ccCCCcceeeEEEEEEEccCCC---eEEeCcccCCcc--cccc-------CHhHHhhhh--------HHHHHhcCccccc
Q 020346 214 TKSGRGKHTTRHVSLLPLSGGG---YLADTPGFNQPS--LLKV-------TKQSLAQTF--------PEIKEMLKANEPA 273 (327)
Q Consensus 214 ~~~~~g~~tt~~i~~v~q~~~~---~i~Dtpg~~~~~--l~~~-------~~~~l~~~~--------~~~~~~LSgGq~q 273 (327)
... .++.++++||++.. ++.|+..+.... ...+ ...++...+ ......|||||+|
T Consensus 71 ~~~-----~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~q 145 (237)
T cd03252 71 PAW-----LRRQVGVVLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQ 145 (237)
T ss_pred HHH-----HhhcEEEEcCCchhccchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHH
Confidence 221 35678999997522 222222221110 0000 001111100 0112349999999
Q ss_pred cccccccccccCCceEEcccH------HHHHHHHHHHHHH
Q 020346 274 KCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEI 307 (327)
Q Consensus 274 ~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~ 307 (327)
|+.+++++ +.+|+++|+|+| ...+.+.+++.++
T Consensus 146 rv~laral-~~~p~llllDEP~~~LD~~~~~~l~~~l~~~ 184 (237)
T cd03252 146 RIAIARAL-IHNPRILIFDEATSALDYESEHAIMRNMHDI 184 (237)
T ss_pred HHHHHHHH-hhCCCEEEEeCCcccCCHHHHHHHHHHHHHh
Confidence 99999999 899999999965 3445555556555
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.1e-19 Score=164.75 Aligned_cols=158 Identities=14% Similarity=0.122 Sum_probs=105.2
Q ss_pred CceeeccCcc----hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecc
Q 020346 137 YEPLFCSVES----KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (327)
Q Consensus 137 ~~~~~~s~~~----~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~ 211 (327)
++.+.++|++ ..+++++++.+ +|++++|+|+||+|||||+++|+| +++|++|+|+++|.++..
T Consensus 4 ~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G------------~~~~~~G~i~~~g~~~~~ 71 (220)
T TIGR02982 4 IRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGG------------LRSVQEGSLKVLGQELYG 71 (220)
T ss_pred EEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhC------------CCCCCCeEEEECCEEhHh
Confidence 4556666654 56899999997 899999999999999999999999 899999999999998865
Q ss_pred ccccCCCcceeeEEEEEEEccCCC----eEEeCcccCCccccccCH-------h------HHhhhhHHHHHhcCcccccc
Q 020346 212 VSTKSGRGKHTTRHVSLLPLSGGG----YLADTPGFNQPSLLKVTK-------Q------SLAQTFPEIKEMLKANEPAK 274 (327)
Q Consensus 212 ~s~~~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~~l~~~~~-------~------~l~~~~~~~~~~LSgGq~q~ 274 (327)
.+... ....++.++++||++.. ++.++..+.......+.. . .+..........||+||+||
T Consensus 72 ~~~~~--~~~~~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr 149 (220)
T TIGR02982 72 ASEKE--LVQLRRNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQR 149 (220)
T ss_pred cCHhH--HHHHHhheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHH
Confidence 43211 01145679999987532 222211111000000000 0 01111111123499999999
Q ss_pred ccccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 275 CSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 275 ~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
+.+++++ +.+|.++++|+| .-.+.+.++++++..
T Consensus 150 v~laral-~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~ 189 (220)
T TIGR02982 150 VAIARAL-VHRPKLVLADEPTAALDSKSGRDVVELMQKLAR 189 (220)
T ss_pred HHHHHHH-hcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH
Confidence 9999999 999999999965 344555566666543
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. |
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=6.1e-20 Score=204.86 Aligned_cols=139 Identities=16% Similarity=0.191 Sum_probs=110.4
Q ss_pred cCCceeeccCc---chhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccc-------------
Q 020346 135 WGYEPLFCSVE---SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEP------------- 197 (327)
Q Consensus 135 ~~~~~~~~s~~---~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p------------- 197 (327)
+.|+.+.|+|. +.++++++++.+ +|+++||||+||||||||+++|+| +|+|
T Consensus 1166 I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r------------~ydp~~~~~~~~~~~~~ 1233 (1466)
T PTZ00265 1166 IEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMR------------FYDLKNDHHIVFKNEHT 1233 (1466)
T ss_pred EEEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHH------------hCCCccccccccccccc
Confidence 66889999995 346999999998 999999999999999999999999 8887
Q ss_pred -----------------------------------------cccceeecceeeccccccCCCcceeeEEEEEEEccC---
Q 020346 198 -----------------------------------------ILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSG--- 233 (327)
Q Consensus 198 -----------------------------------------~~G~i~~~g~~v~~~s~~~~~g~~tt~~i~~v~q~~--- 233 (327)
++|+|++||.++.+++... .++++++|||++
T Consensus 1234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~-----lR~~i~~V~Qep~LF 1308 (1466)
T PTZ00265 1234 NDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKD-----LRNLFSIVSQEPMLF 1308 (1466)
T ss_pred cccccccccccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHH-----HHhhccEeCCCCccc
Confidence 6999999999999987654 788999999986
Q ss_pred CCeEEeCcccCCccccccCHhHHh------hhhHHHH--------------HhcCccccccccccccccccCCceEEccc
Q 020346 234 GGYLADTPGFNQPSLLKVTKQSLA------QTFPEIK--------------EMLKANEPAKCSFNNCLHLGEPGCVVKGD 293 (327)
Q Consensus 234 ~~~i~Dtpg~~~~~l~~~~~~~l~------~~~~~~~--------------~~LSgGq~q~~~~~~~~h~~ep~~~v~~~ 293 (327)
++++.|+..+..+.. +.+++. ...+.+. ..|||||+||+++|+++ +.+|.++|+||
T Consensus 1309 ~gTIreNI~~g~~~a---t~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARAL-lr~p~ILLLDE 1384 (1466)
T PTZ00265 1309 NMSIYENIKFGKEDA---TREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARAL-LREPKILLLDE 1384 (1466)
T ss_pred cccHHHHHhcCCCCC---CHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHH-hcCCCEEEEeC
Confidence 556667766654321 112111 1111111 13999999999999999 99999999995
Q ss_pred H
Q 020346 294 W 294 (327)
Q Consensus 294 ~ 294 (327)
+
T Consensus 1385 a 1385 (1466)
T PTZ00265 1385 A 1385 (1466)
T ss_pred c
Confidence 5
|
|
| >cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR) | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.6e-19 Score=160.86 Aligned_cols=140 Identities=20% Similarity=0.209 Sum_probs=102.8
Q ss_pred CCceeeccCcc------hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccc--cccccceeecc
Q 020346 136 GYEPLFCSVES------KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWF--EPILGSKWFED 206 (327)
Q Consensus 136 ~~~~~~~s~~~------~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~--~p~~G~i~~~g 206 (327)
.++.+.++|.+ ..+++++++.+ +|++++|+|+||+|||||+++|+| ++ +|++|+|.++|
T Consensus 5 ~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~G------------l~~~~~~~G~i~~~g 72 (194)
T cd03213 5 SFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAG------------RRTGLGVSGEVLING 72 (194)
T ss_pred EEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhC------------CCCCCCCceEEEECC
Confidence 45677777764 57999999998 999999999999999999999999 88 99999999999
Q ss_pred eeeccccccCCCcceeeEEEEEEEccCCCeEEeCcccCCccccccCHhHHhhhhHHHHHhcCccccccccccccccccCC
Q 020346 207 QRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEP 286 (327)
Q Consensus 207 ~~v~~~s~~~~~g~~tt~~i~~v~q~~~~~i~Dtpg~~~~~l~~~~~~~l~~~~~~~~~~LSgGq~q~~~~~~~~h~~ep 286 (327)
+++... . .++.+++++|++..+ . .....+++.... . ...||+||+||+.+++++ +.+|
T Consensus 73 ~~~~~~---~-----~~~~i~~~~q~~~~~--~----~~t~~~~i~~~~------~-~~~LS~G~~qrv~laral-~~~p 130 (194)
T cd03213 73 RPLDKR---S-----FRKIIGYVPQDDILH--P----TLTVRETLMFAA------K-LRGLSGGERKRVSIALEL-VSNP 130 (194)
T ss_pred EeCchH---h-----hhheEEEccCcccCC--C----CCcHHHHHHHHH------H-hccCCHHHHHHHHHHHHH-HcCC
Confidence 987542 1 456789998853110 0 011112221110 0 115999999999999999 8999
Q ss_pred ceEEcccH------HHHHHHHHHHHHHHH
Q 020346 287 GCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 287 ~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
.++++|+| .-.+...++++++..
T Consensus 131 ~illlDEP~~~LD~~~~~~l~~~l~~~~~ 159 (194)
T cd03213 131 SLLFLDEPTSGLDSSSALQVMSLLRRLAD 159 (194)
T ss_pred CEEEEeCCCcCCCHHHHHHHHHHHHHHHh
Confidence 99999965 344555566666543
|
DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. |
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.6e-19 Score=167.51 Aligned_cols=160 Identities=16% Similarity=0.154 Sum_probs=105.2
Q ss_pred CCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeeccee-----e
Q 020346 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQR-----V 209 (327)
Q Consensus 136 ~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~-----v 209 (327)
.++.+.++|.+..+++++++.+ +|++++|+|+||||||||+++|+| +++|++|+|+++|.+ +
T Consensus 8 ~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G------------l~~p~~G~i~~~g~~~~~~~i 75 (258)
T PRK11701 8 SVRGLTKLYGPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSA------------RLAPDAGEVHYRMRDGQLRDL 75 (258)
T ss_pred EEeeeEEEcCCceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhC------------CCCCCCCEEEECCcccccccc
Confidence 4567778887777899999998 999999999999999999999999 899999999999987 5
Q ss_pred ccccccCCCcceeeEEEEEEEccCCCeE------EeCccc-----CCcccccc--CHhHHhhhh-------HHHHHhcCc
Q 020346 210 GEVSTKSGRGKHTTRHVSLLPLSGGGYL------ADTPGF-----NQPSLLKV--TKQSLAQTF-------PEIKEMLKA 269 (327)
Q Consensus 210 ~~~s~~~~~g~~tt~~i~~v~q~~~~~i------~Dtpg~-----~~~~l~~~--~~~~l~~~~-------~~~~~~LSg 269 (327)
...+.... ....+..++|++|++...+ .++..+ ........ ...++...+ ......|||
T Consensus 76 ~~~~~~~~-~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~ 154 (258)
T PRK11701 76 YALSEAER-RRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSG 154 (258)
T ss_pred ccCCHHHH-HHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCH
Confidence 43321100 0002456899999753111 111110 00000000 000111111 111234999
Q ss_pred cccccccccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 270 NEPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 270 Gq~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
||+||++|++++ +.+|.++++|+| ...+.+.++++++..
T Consensus 155 Gq~qrl~laral-~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~ 199 (258)
T PRK11701 155 GMQQRLQIARNL-VTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVR 199 (258)
T ss_pred HHHHHHHHHHHH-hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH
Confidence 999999999999 899999999965 344555555655543
|
|
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.4e-19 Score=170.87 Aligned_cols=156 Identities=17% Similarity=0.199 Sum_probs=105.1
Q ss_pred CceeeccCcc-----hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeec
Q 020346 137 YEPLFCSVES-----KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (327)
Q Consensus 137 ~~~~~~s~~~-----~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~ 210 (327)
++.+.++|.. ..+++++++.+ +|++++|+|+||+|||||+++|+| +++|++|+|+++|.++.
T Consensus 4 ~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~G------------l~~p~~G~i~~~g~~i~ 71 (288)
T PRK13643 4 FEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNG------------LLQPTEGKVTVGDIVVS 71 (288)
T ss_pred EEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhc------------CCCCCCcEEEECCEECc
Confidence 5667777753 24899999998 999999999999999999999999 89999999999999875
Q ss_pred cccccCCCcceeeEEEEEEEccCCC-----eEEeCcccCCcc--c-------------cccCHh-HHhhhhHHHHHhcCc
Q 020346 211 EVSTKSGRGKHTTRHVSLLPLSGGG-----YLADTPGFNQPS--L-------------LKVTKQ-SLAQTFPEIKEMLKA 269 (327)
Q Consensus 211 ~~s~~~~~g~~tt~~i~~v~q~~~~-----~i~Dtpg~~~~~--l-------------~~~~~~-~l~~~~~~~~~~LSg 269 (327)
..+... .....++.+++++|++.. ++.|...+.... . +.+.+. .+.... ...|||
T Consensus 72 ~~~~~~-~~~~~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~---~~~LSg 147 (288)
T PRK13643 72 STSKQK-EIKPVRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKS---PFELSG 147 (288)
T ss_pred cccccc-cHHHHHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCC---cccCCH
Confidence 321110 001145679999997522 222222221100 0 000110 011111 234999
Q ss_pred cccccccccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 270 NEPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 270 Gq~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
||+||+++++++ +.+|.++|+|+| .....+.++++++..
T Consensus 148 GqkqrvaiA~aL-~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~ 192 (288)
T PRK13643 148 GQMRRVAIAGIL-AMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQ 192 (288)
T ss_pred HHHHHHHHHHHH-HhCCCEEEEECCccCCCHHHHHHHHHHHHHHHH
Confidence 999999999999 999999999965 344455566666643
|
|
| >cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1) | Back alignment and domain information |
|---|
Probab=99.77 E-value=7.4e-20 Score=164.17 Aligned_cols=151 Identities=16% Similarity=0.153 Sum_probs=106.7
Q ss_pred cCCceeeccCcc--hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecc
Q 020346 135 WGYEPLFCSVES--KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (327)
Q Consensus 135 ~~~~~~~~s~~~--~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~ 211 (327)
+.++.+.++|+. ..+++++++.+ +|++++|+|+||+|||||+++|+| +++|++|+|+++|.++..
T Consensus 7 l~~~~l~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G------------l~~~~~G~i~~~g~~~~~ 74 (207)
T cd03369 7 IEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFR------------FLEAEEGKIEIDGIDIST 74 (207)
T ss_pred EEEEEEEEEeCCCCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhc------------ccCCCCCeEEECCEEhHH
Confidence 446777788864 46899999998 999999999999999999999999 899999999999998765
Q ss_pred ccccCCCcceeeEEEEEEEccCCC---eEEeCcccCCccccccCHhHHhhhhH--HHHHhcCccccccccccccccccCC
Q 020346 212 VSTKSGRGKHTTRHVSLLPLSGGG---YLADTPGFNQPSLLKVTKQSLAQTFP--EIKEMLKANEPAKCSFNNCLHLGEP 286 (327)
Q Consensus 212 ~s~~~~~g~~tt~~i~~v~q~~~~---~i~Dtpg~~~~~l~~~~~~~l~~~~~--~~~~~LSgGq~q~~~~~~~~h~~ep 286 (327)
.+... .+..++|++|++.. ++.++..+.. ......+...+. .-...||+||+||+.+++++ +.+|
T Consensus 75 ~~~~~-----~~~~i~~v~q~~~~~~~tv~~~l~~~~----~~~~~~~~~~l~~~~~~~~LS~G~~qrv~laral-~~~p 144 (207)
T cd03369 75 IPLED-----LRSSLTIIPQDPTLFSGTIRSNLDPFD----EYSDEEIYGALRVSEGGLNLSQGQRQLLCLARAL-LKRP 144 (207)
T ss_pred CCHHH-----HHhhEEEEecCCcccCccHHHHhcccC----CCCHHHHHHHhhccCCCCcCCHHHHHHHHHHHHH-hhCC
Confidence 44222 35679999997522 2222221110 111111111111 11234999999999999999 8999
Q ss_pred ceEEcccH------HHHHHHHHHHHHH
Q 020346 287 GCVVKGDW------ERYQYYFQLLDEI 307 (327)
Q Consensus 287 ~~~v~~~~------~r~~~~~~ll~e~ 307 (327)
+++++|+| ...+.+.++++++
T Consensus 145 ~llllDEP~~~LD~~~~~~l~~~l~~~ 171 (207)
T cd03369 145 RVLVLDEATASIDYATDALIQKTIREE 171 (207)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHh
Confidence 99999965 3445555666554
|
NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. |
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=1e-19 Score=168.65 Aligned_cols=162 Identities=14% Similarity=0.122 Sum_probs=109.6
Q ss_pred cCCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccc
Q 020346 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (327)
Q Consensus 135 ~~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s 213 (327)
+.++.+.+.|.+..+++++++.+ +|++++|+|+||+|||||+++|+| +++|++|+|+++|.++...+
T Consensus 6 l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G------------~~~~~~G~i~~~g~~~~~~~ 73 (257)
T PRK10619 6 LNVIDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINF------------LEKPSEGSIVVNGQTINLVR 73 (257)
T ss_pred EEEeeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhC------------CCCCCCeEEEECCEEccccc
Confidence 34567778887778999999998 999999999999999999999999 88999999999998775422
Q ss_pred ccCC--------CcceeeEEEEEEEccCCC----eEEeCcccCCccccccC-------HhHHhhh------h-HHHHHhc
Q 020346 214 TKSG--------RGKHTTRHVSLLPLSGGG----YLADTPGFNQPSLLKVT-------KQSLAQT------F-PEIKEML 267 (327)
Q Consensus 214 ~~~~--------~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~~l~~~~-------~~~l~~~------~-~~~~~~L 267 (327)
...+ ..+..++.++|+||.+.. ++.|+..+......... ..++... . ......|
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~L 153 (257)
T PRK10619 74 DKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHL 153 (257)
T ss_pred ccccccccccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccC
Confidence 1000 001135679999997532 23333322100000000 0011110 0 1112349
Q ss_pred CccccccccccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 268 KANEPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 268 SgGq~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
|+||+||+.+++++ +.+|.++|+|+| ...+.+.++++++..
T Consensus 154 S~G~~qrv~laral-~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~ 200 (257)
T PRK10619 154 SGGQQQRVSIARAL-AMEPEVLLFDEPTSALDPELVGEVLRIMQQLAE 200 (257)
T ss_pred CHHHHHHHHHHHHH-hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh
Confidence 99999999999999 999999999955 455666677777654
|
|
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.77 E-value=6.5e-20 Score=168.95 Aligned_cols=157 Identities=18% Similarity=0.218 Sum_probs=106.5
Q ss_pred CceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCccccccccccc-----ccceeecceeec
Q 020346 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPI-----LGSKWFEDQRVG 210 (327)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~-----~G~i~~~g~~v~ 210 (327)
++.+.++|++..+++++++.+ +|++++|+|+||||||||+++|+| +++|+ +|+|+++|.++.
T Consensus 4 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G------------~~~p~~~~~~~G~i~~~g~~~~ 71 (247)
T TIGR00972 4 IENLNLFYGEKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNR------------MNDLVPGVRIEGKVLFDGQDIY 71 (247)
T ss_pred EEEEEEEECCeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhc------------cCCCCcCCCCceEEEECCEEcc
Confidence 567778887777999999998 999999999999999999999999 88888 999999999876
Q ss_pred cccccCCCcceeeEEEEEEEccCCC---eEEeCcccCCccccccCH-------h------HHh----hhhHHHHHhcCcc
Q 020346 211 EVSTKSGRGKHTTRHVSLLPLSGGG---YLADTPGFNQPSLLKVTK-------Q------SLA----QTFPEIKEMLKAN 270 (327)
Q Consensus 211 ~~s~~~~~g~~tt~~i~~v~q~~~~---~i~Dtpg~~~~~l~~~~~-------~------~l~----~~~~~~~~~LSgG 270 (327)
..+... ...++.++|+||.+.. ++.|+..+.......... . ++. .........||||
T Consensus 72 ~~~~~~---~~~~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG 148 (247)
T TIGR00972 72 DKKIDV---VELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGG 148 (247)
T ss_pred ccccch---HHHHhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHH
Confidence 421100 1135679999997532 122222111000000000 0 000 0011112349999
Q ss_pred ccccccccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 271 EPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 271 q~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
|+||+.+++++ +.+|+++++|+| .....+.++++++.+
T Consensus 149 ~~qrv~laral-~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~ 192 (247)
T TIGR00972 149 QQQRLCIARAL-AVEPEVLLLDEPTSALDPIATGKIEELIQELKK 192 (247)
T ss_pred HHHHHHHHHHH-hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh
Confidence 99999999999 899999999965 355556666666643
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.5e-20 Score=163.52 Aligned_cols=137 Identities=18% Similarity=0.261 Sum_probs=108.8
Q ss_pred CceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccccc
Q 020346 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (327)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~ 215 (327)
.+.++.+|+++.+++++++.+ +|++++|+||||||||||+.++++ +.++++|+|+++|.++...+.+
T Consensus 4 i~nv~K~y~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sR------------L~~~d~G~i~i~g~~~~~~~s~ 71 (252)
T COG4604 4 IENVSKSYGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSR------------LLKKDSGEITIDGLELTSTPSK 71 (252)
T ss_pred ehhhhHhhCCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHH------------hccccCceEEEeeeecccCChH
Confidence 456788899999999999998 899999999999999999999999 9999999999999999887765
Q ss_pred CCCcceeeEEEEEEEccCC----CeEEeCcccCCccc-----------------cccCHhHHhhhhHHHHHhcCcccccc
Q 020346 216 SGRGKHTTRHVSLLPLSGG----GYLADTPGFNQPSL-----------------LKVTKQSLAQTFPEIKEMLKANEPAK 274 (327)
Q Consensus 216 ~~~g~~tt~~i~~v~q~~~----~~i~Dtpg~~~~~l-----------------~~~~~~~l~~~~~~~~~~LSgGq~q~ 274 (327)
. ..+.++.+.|.+. .++.|-.+|..+.. +.+.+.++.+.+- ..|||||+||
T Consensus 72 ~-----LAk~lSILkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryL---d~LSGGQrQR 143 (252)
T COG4604 72 E-----LAKKLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYL---DELSGGQRQR 143 (252)
T ss_pred H-----HHHHHHHHHhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhH---Hhcccchhhh
Confidence 4 5666777777652 35567777765431 2223334444443 3499999999
Q ss_pred ccccccccccCCceEEcccH
Q 020346 275 CSFNNCLHLGEPGCVVKGDW 294 (327)
Q Consensus 275 ~~~~~~~h~~ep~~~v~~~~ 294 (327)
.-+|..+ ..+.+..++|+|
T Consensus 144 AfIAMVl-aQdTdyvlLDEP 162 (252)
T COG4604 144 AFIAMVL-AQDTDYVLLDEP 162 (252)
T ss_pred hhhheee-eccCcEEEecCc
Confidence 9999766 889999999976
|
|
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.2e-19 Score=165.07 Aligned_cols=155 Identities=20% Similarity=0.315 Sum_probs=106.1
Q ss_pred cCCceeeccCcc-hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccc
Q 020346 135 WGYEPLFCSVES-KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV 212 (327)
Q Consensus 135 ~~~~~~~~s~~~-~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~ 212 (327)
+.++.+.++|.+ ..+++++++.+ +|++++|+||||+|||||+++|+| +.+|++|+|+++|.++...
T Consensus 3 l~~~~l~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G------------~~~~~~G~i~~~g~~~~~~ 70 (229)
T cd03254 3 IEFENVNFSYDEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMR------------FYDPQKGQILIDGIDIRDI 70 (229)
T ss_pred EEEEEEEEecCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhc------------CcCCCCCEEEECCEeHHHc
Confidence 345677788864 46999999998 999999999999999999999999 8899999999999887654
Q ss_pred cccCCCcceeeEEEEEEEccCCC---eEEeCcccCCccc--ccc-------CHhHHhhhhH--------HHHHhcCcccc
Q 020346 213 STKSGRGKHTTRHVSLLPLSGGG---YLADTPGFNQPSL--LKV-------TKQSLAQTFP--------EIKEMLKANEP 272 (327)
Q Consensus 213 s~~~~~g~~tt~~i~~v~q~~~~---~i~Dtpg~~~~~l--~~~-------~~~~l~~~~~--------~~~~~LSgGq~ 272 (327)
+... .++.++|++|++.. ++.|+..+..... ..+ ......+.++ .....||+||+
T Consensus 71 ~~~~-----~~~~i~~~~q~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~ 145 (229)
T cd03254 71 SRKS-----LRSMIGVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGER 145 (229)
T ss_pred CHHH-----HhhhEEEecCCchhhhhHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHH
Confidence 3221 45678999997522 2222222111100 000 0111111110 00135999999
Q ss_pred ccccccccccccCCceEEcccH------HHHHHHHHHHHHH
Q 020346 273 AKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEI 307 (327)
Q Consensus 273 q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~ 307 (327)
||+.+++++ +.+|+++++|+| ...+.+.+++.++
T Consensus 146 ~rv~la~al-~~~p~llllDEP~~~LD~~~~~~l~~~l~~~ 185 (229)
T cd03254 146 QLLAIARAM-LRDPKILILDEATSNIDTETEKLIQEALEKL 185 (229)
T ss_pred HHHHHHHHH-hcCCCEEEEeCccccCCHHHHHHHHHHHHHh
Confidence 999999999 999999999965 3444555666555
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.77 E-value=9.6e-20 Score=186.68 Aligned_cols=142 Identities=17% Similarity=0.340 Sum_probs=108.3
Q ss_pred cCCceeeccCcc---hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeec
Q 020346 135 WGYEPLFCSVES---KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (327)
Q Consensus 135 ~~~~~~~~s~~~---~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~ 210 (327)
+.++.+.++|.. +.+++++++.+ +|+.++|+|+||+|||||+++|+| +++|++|+|.+||.++.
T Consensus 338 i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~g------------l~~p~~G~I~i~g~~i~ 405 (576)
T TIGR02204 338 IEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLR------------FYDPQSGRILLDGVDLR 405 (576)
T ss_pred EEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHh------------ccCCCCCEEEECCEEHH
Confidence 567888898864 46899999998 999999999999999999999999 99999999999999998
Q ss_pred cccccCCCcceeeEEEEEEEccC---CCeEEeCcccCCccccc---------cCHhHHhhhhH--------HHHHhcCcc
Q 020346 211 EVSTKSGRGKHTTRHVSLLPLSG---GGYLADTPGFNQPSLLK---------VTKQSLAQTFP--------EIKEMLKAN 270 (327)
Q Consensus 211 ~~s~~~~~g~~tt~~i~~v~q~~---~~~i~Dtpg~~~~~l~~---------~~~~~l~~~~~--------~~~~~LSgG 270 (327)
..+... .+++++++||++ ++++.|+..+..+...+ ....+.-..+| +-...||||
T Consensus 406 ~~~~~~-----~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgG 480 (576)
T TIGR02204 406 QLDPAE-----LRARMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGG 480 (576)
T ss_pred hcCHHH-----HHHhceEEccCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHH
Confidence 776543 677899999986 44555665543322111 11111111111 111239999
Q ss_pred ccccccccccccccCCceEEcccH
Q 020346 271 EPAKCSFNNCLHLGEPGCVVKGDW 294 (327)
Q Consensus 271 q~q~~~~~~~~h~~ep~~~v~~~~ 294 (327)
|+||+++++|+ +.+|+++++|||
T Consensus 481 q~Qrl~laRal-~~~~~ililDEp 503 (576)
T TIGR02204 481 QRQRIAIARAI-LKDAPILLLDEA 503 (576)
T ss_pred HHHHHHHHHHH-HhCCCeEEEeCc
Confidence 99999999999 999999999965
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. |
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=4e-20 Score=174.48 Aligned_cols=159 Identities=16% Similarity=0.206 Sum_probs=106.1
Q ss_pred CCceeeccCcc-----hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceee
Q 020346 136 GYEPLFCSVES-----KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRV 209 (327)
Q Consensus 136 ~~~~~~~s~~~-----~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v 209 (327)
.++.+.++|+. ..+++++++.+ +|++++|+|+||+|||||+++|+| +++|++|+|.++|.++
T Consensus 4 ~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~G------------l~~p~~G~i~~~g~~~ 71 (287)
T PRK13641 4 KFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNA------------LLKPSSGTITIAGYHI 71 (287)
T ss_pred EEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhc------------CCCCCCcEEEECCEEC
Confidence 35667778863 35899999998 999999999999999999999999 8999999999999987
Q ss_pred ccccccCCCcceeeEEEEEEEccCCC-----eEEeCcccCCccccccCHh-------HHhhh-------hHHHHHhcCcc
Q 020346 210 GEVSTKSGRGKHTTRHVSLLPLSGGG-----YLADTPGFNQPSLLKVTKQ-------SLAQT-------FPEIKEMLKAN 270 (327)
Q Consensus 210 ~~~s~~~~~g~~tt~~i~~v~q~~~~-----~i~Dtpg~~~~~l~~~~~~-------~l~~~-------~~~~~~~LSgG 270 (327)
....... .....+..+++++|++.. ++.|+..+... ....... ++... .......||||
T Consensus 72 ~~~~~~~-~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~-~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgG 149 (287)
T PRK13641 72 TPETGNK-NLKKLRKKVSLVFQFPEAQLFENTVLKDVEFGPK-NFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGG 149 (287)
T ss_pred ccccccc-hHHHHHhceEEEEeChhhhhccchHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHH
Confidence 5321000 001134579999997521 22222221100 0000000 00000 01112249999
Q ss_pred ccccccccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 271 EPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 271 q~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
|+||+++++|+ +.+|.++|+|+| ...+.+.+++.++.+
T Consensus 150 q~qrl~laral-~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~ 193 (287)
T PRK13641 150 QMRRVAIAGVM-AYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQK 193 (287)
T ss_pred HHHHHHHHHHH-HcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh
Confidence 99999999999 999999999955 455666677776643
|
|
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.5e-19 Score=166.45 Aligned_cols=158 Identities=14% Similarity=0.154 Sum_probs=106.7
Q ss_pred cCCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCccccccccc-----ccccceeeccee
Q 020346 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFE-----PILGSKWFEDQR 208 (327)
Q Consensus 135 ~~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~-----p~~G~i~~~g~~ 208 (327)
+.++.+.++|++..+++++++.+ +|++++|+|+||||||||+++|+| +++ |++|+|+++|.+
T Consensus 14 l~~~~l~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G------------l~~~~p~~p~~G~i~~~g~~ 81 (260)
T PRK10744 14 IQVRNLNFYYGKFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNR------------MYELYPEQRAEGEILLDGEN 81 (260)
T ss_pred EEEEEEEEEeCCeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhc------------ccccCCCCCcceEEEECCEE
Confidence 44677888887777999999998 999999999999999999999999 664 589999999988
Q ss_pred eccccccCCCcceeeEEEEEEEccCCC---eEEeCcccCCccccccCH-------hHHhhhh----------HHHHHhcC
Q 020346 209 VGEVSTKSGRGKHTTRHVSLLPLSGGG---YLADTPGFNQPSLLKVTK-------QSLAQTF----------PEIKEMLK 268 (327)
Q Consensus 209 v~~~s~~~~~g~~tt~~i~~v~q~~~~---~i~Dtpg~~~~~l~~~~~-------~~l~~~~----------~~~~~~LS 268 (327)
+...... ....+++++|++|++.. ++.|+..+.......... .++.+.+ ......||
T Consensus 82 ~~~~~~~---~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS 158 (260)
T PRK10744 82 ILTPKQD---IALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLS 158 (260)
T ss_pred ccccccc---hHHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCC
Confidence 7532110 01145679999997532 222222211000000000 0111111 11122499
Q ss_pred ccccccccccccccccCCceEEcccH------HHHHHHHHHHHHHH
Q 020346 269 ANEPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIR 308 (327)
Q Consensus 269 gGq~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~ 308 (327)
|||+||+.+++++ +.+|.++|+|+| ...+.+.++++++.
T Consensus 159 ~Gq~qrv~laral-~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~ 203 (260)
T PRK10744 159 GGQQQRLCIARGI-AIRPEVLLLDEPCSALDPISTGRIEELITELK 203 (260)
T ss_pred HHHHHHHHHHHHH-HCCCCEEEEcCCCccCCHHHHHHHHHHHHHHh
Confidence 9999999999999 999999999965 45555666666663
|
|
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.1e-19 Score=164.98 Aligned_cols=151 Identities=14% Similarity=0.164 Sum_probs=104.8
Q ss_pred CceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccccc
Q 020346 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (327)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~ 215 (327)
++.+.++|.+..+++++++.+ +|++++|+|+||+|||||+++|+| +++|++|+|+++|.++...
T Consensus 3 l~~v~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G------------~~~~~~G~i~~~~~~~~~~--- 67 (223)
T TIGR03740 3 TKNLSKRFGKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITG------------ILRPTSGEIIFDGHPWTRK--- 67 (223)
T ss_pred EEeEEEEECCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhC------------CCCCCceEEEECCEecccc---
Confidence 456677777777999999998 999999999999999999999999 8899999999999876421
Q ss_pred CCCcceeeEEEEEEEccCCC----eEEeCcccCCc--ccc--c----cCHhHHhhhhHHHHHhcCccccccccccccccc
Q 020346 216 SGRGKHTTRHVSLLPLSGGG----YLADTPGFNQP--SLL--K----VTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHL 283 (327)
Q Consensus 216 ~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~--~l~--~----~~~~~l~~~~~~~~~~LSgGq~q~~~~~~~~h~ 283 (327)
..+.++++||.+.. ++.|+..+... ... . ++...+..........||+||+||+.+++++ +
T Consensus 68 ------~~~~~~~~~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral-~ 140 (223)
T TIGR03740 68 ------DLHKIGSLIESPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIAL-L 140 (223)
T ss_pred ------ccccEEEEcCCCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHH-h
Confidence 12468899886532 22222211000 000 0 0000111111112334999999999999999 9
Q ss_pred cCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 284 GEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 284 ~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
.+|.++++|+| ...+.+.+++.++..
T Consensus 141 ~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~ 172 (223)
T TIGR03740 141 NHPKLLILDEPTNGLDPIGIQELRELIRSFPE 172 (223)
T ss_pred cCCCEEEECCCccCCCHHHHHHHHHHHHHHHH
Confidence 99999999965 456666677777643
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >TIGR01194 cyc_pep_trnsptr cyclic peptide transporter | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.1e-19 Score=185.91 Aligned_cols=137 Identities=14% Similarity=0.189 Sum_probs=102.9
Q ss_pred hcCCceeeccCcch-----hhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecce
Q 020346 134 TWGYEPLFCSVESK-----LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQ 207 (327)
Q Consensus 134 ~~~~~~~~~s~~~~-----~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~ 207 (327)
.+.++.+.++|.++ .+++++++.+ +|++++|+||||+|||||+|+|+| +++|++|+|.++|.
T Consensus 337 ~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g------------~~~p~~G~i~~~g~ 404 (555)
T TIGR01194 337 SIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCG------------LYIPQEGEILLDGA 404 (555)
T ss_pred eEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhC------------CCCCCCcEEEECCE
Confidence 35678899999642 5899999998 999999999999999999999999 99999999999999
Q ss_pred eeccccccCCCcceeeEEEEEEEccC---CCeEEeCcccCCccccccCHhHHhh------------hhHHH---HHhcCc
Q 020346 208 RVGEVSTKSGRGKHTTRHVSLLPLSG---GGYLADTPGFNQPSLLKVTKQSLAQ------------TFPEI---KEMLKA 269 (327)
Q Consensus 208 ~v~~~s~~~~~g~~tt~~i~~v~q~~---~~~i~Dtpg~~~~~l~~~~~~~l~~------------~~~~~---~~~LSg 269 (327)
++...+... .+..+++++|++ +.++.++. .+ ....+++.+ ..|+- ...|||
T Consensus 405 ~i~~~~~~~-----~~~~i~~v~q~~~lf~~ti~~n~---~~---~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSg 473 (555)
T TIGR01194 405 AVSADSRDD-----YRDLFSAIFADFHLFDDLIGPDE---GE---HASLDNAQQYLQRLEIADKVKIEDGGFSTTTALST 473 (555)
T ss_pred ECCCCCHHH-----HHhhCcEEccChhhhhhhhhccc---cc---chhHHHHHHHHHHcCCchhhcccccccCCcccCCH
Confidence 998776543 567899999974 22232321 00 011111111 01100 134999
Q ss_pred cccccccccccccccCCceEEcccH
Q 020346 270 NEPAKCSFNNCLHLGEPGCVVKGDW 294 (327)
Q Consensus 270 Gq~q~~~~~~~~h~~ep~~~v~~~~ 294 (327)
||+||+++++++ +.+|.++|+||+
T Consensus 474 Gq~qRlalaRal-l~~~~ililDE~ 497 (555)
T TIGR01194 474 GQQKRLALICAW-LEDRPILLFDEW 497 (555)
T ss_pred HHHHHHHHHHHH-HcCCCEEEEeCC
Confidence 999999999999 999999999965
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. |
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=99.77 E-value=2e-19 Score=167.67 Aligned_cols=158 Identities=18% Similarity=0.201 Sum_probs=105.0
Q ss_pred CceeeccCc---------chhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecc
Q 020346 137 YEPLFCSVE---------SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFED 206 (327)
Q Consensus 137 ~~~~~~s~~---------~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g 206 (327)
++.+.++|. +..+++++++.+ +|++++|+|+||||||||+++|+| +++|++|+|+++|
T Consensus 5 ~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G------------l~~p~~G~i~~~g 72 (265)
T TIGR02769 5 VRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLG------------LEKPAQGTVSFRG 72 (265)
T ss_pred EEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhC------------CCCCCCcEEEECC
Confidence 456666664 356899999998 999999999999999999999999 8999999999999
Q ss_pred eeeccccccCCCcceeeEEEEEEEccCCC------eEEeCcccCCccccccC----Hh---HHhhh-------hHHHHHh
Q 020346 207 QRVGEVSTKSGRGKHTTRHVSLLPLSGGG------YLADTPGFNQPSLLKVT----KQ---SLAQT-------FPEIKEM 266 (327)
Q Consensus 207 ~~v~~~s~~~~~g~~tt~~i~~v~q~~~~------~i~Dtpg~~~~~l~~~~----~~---~l~~~-------~~~~~~~ 266 (327)
.++...+.... ...++.++|++|.+.. ++.|+..+.......+. .. ++.+. .......
T Consensus 73 ~~i~~~~~~~~--~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~ 150 (265)
T TIGR02769 73 QDLYQLDRKQR--RAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQ 150 (265)
T ss_pred EEccccCHHHH--HHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhh
Confidence 98765432110 0134579999997421 11121111000000000 00 11110 0111234
Q ss_pred cCccccccccccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 267 LKANEPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 267 LSgGq~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
|||||+||+++++++ +.+|.++++|+| ...+...++++++..
T Consensus 151 LSgGe~qrv~laral-~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~ 198 (265)
T TIGR02769 151 LSGGQLQRINIARAL-AVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQ 198 (265)
T ss_pred CCHHHHHHHHHHHHH-hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence 999999999999999 999999999965 355556666666644
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.5e-19 Score=203.42 Aligned_cols=138 Identities=18% Similarity=0.183 Sum_probs=107.8
Q ss_pred cCCceeeccCcc--hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecc
Q 020346 135 WGYEPLFCSVES--KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (327)
Q Consensus 135 ~~~~~~~~s~~~--~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~ 211 (327)
+.|+.+.++|.. +.+|+++++.+ +|+++||||+||||||||+++|.| +++|++|+|.+||.++.+
T Consensus 1238 I~f~nVsf~Y~~~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~r------------l~~p~~G~I~IDG~dI~~ 1305 (1622)
T PLN03130 1238 IKFEDVVLRYRPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFR------------IVELERGRILIDGCDISK 1305 (1622)
T ss_pred EEEEEEEEEeCCCCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhC------------cCCCCCceEEECCEeccc
Confidence 568899999964 36999999998 999999999999999999999999 999999999999999999
Q ss_pred ccccCCCcceeeEEEEEEEccC---CCeEEeCcccCCccccccCHhHHhh------hhHHHH--------------HhcC
Q 020346 212 VSTKSGRGKHTTRHVSLLPLSG---GGYLADTPGFNQPSLLKVTKQSLAQ------TFPEIK--------------EMLK 268 (327)
Q Consensus 212 ~s~~~~~g~~tt~~i~~v~q~~---~~~i~Dtpg~~~~~l~~~~~~~l~~------~~~~~~--------------~~LS 268 (327)
++... .+++++++||++ ++++.|+...... .+.+++.+ ..+.+. ..||
T Consensus 1306 i~l~~-----LR~~IsiVpQdp~LF~GTIreNLd~~~~----~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLS 1376 (1622)
T PLN03130 1306 FGLMD-----LRKVLGIIPQAPVLFSGTVRFNLDPFNE----HNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFS 1376 (1622)
T ss_pred CCHHH-----HHhccEEECCCCccccccHHHHhCcCCC----CCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCC
Confidence 88665 788999999986 3444444332211 11111111 111111 2499
Q ss_pred ccccccccccccccccCCceEEcccH
Q 020346 269 ANEPAKCSFNNCLHLGEPGCVVKGDW 294 (327)
Q Consensus 269 gGq~q~~~~~~~~h~~ep~~~v~~~~ 294 (327)
|||+||+++|+++ +.+|.++|+||+
T Consensus 1377 gGQrQrlaLARAL-Lr~p~ILILDEA 1401 (1622)
T PLN03130 1377 VGQRQLLSLARAL-LRRSKILVLDEA 1401 (1622)
T ss_pred HHHHHHHHHHHHH-HcCCCEEEEECC
Confidence 9999999999999 999999999954
|
|
| >PRK13539 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=6.4e-20 Score=164.88 Aligned_cols=151 Identities=17% Similarity=0.217 Sum_probs=104.0
Q ss_pred CCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccc
Q 020346 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (327)
Q Consensus 136 ~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~ 214 (327)
.++.+.++|++..+++++++.+ +|++++|+|+||+|||||+++|+| +++|++|+|+++|.++.. .
T Consensus 4 ~~~~l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G------------~~~~~~G~i~~~g~~~~~-~- 69 (207)
T PRK13539 4 EGEDLACVRGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAG------------LLPPAAGTIKLDGGDIDD-P- 69 (207)
T ss_pred EEEeEEEEECCeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhC------------CCCCCCceEEECCEeCcc-h-
Confidence 3466777887777899999998 999999999999999999999999 889999999999987532 1
Q ss_pred cCCCcceeeEEEEEEEccCC----CeEEeCcccCCcc-----------ccccCHhHHhhhhHHHHHhcCccccccccccc
Q 020346 215 KSGRGKHTTRHVSLLPLSGG----GYLADTPGFNQPS-----------LLKVTKQSLAQTFPEIKEMLKANEPAKCSFNN 279 (327)
Q Consensus 215 ~~~~g~~tt~~i~~v~q~~~----~~i~Dtpg~~~~~-----------l~~~~~~~l~~~~~~~~~~LSgGq~q~~~~~~ 279 (327)
. .+..++++++... .++.|+..+.... ++.+......... ...||+||+||+.+++
T Consensus 70 --~----~~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---~~~LS~G~~qrl~la~ 140 (207)
T PRK13539 70 --D----VAEACHYLGHRNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAPLAHLP---FGYLSAGQKRRVALAR 140 (207)
T ss_pred --h----hHhhcEEecCCCcCCCCCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHcCC---hhhcCHHHHHHHHHHH
Confidence 0 3456788876532 1222222111000 0001111111111 2349999999999999
Q ss_pred cccccCCceEEcccH------HHHHHHHHHHHHHHHh
Q 020346 280 CLHLGEPGCVVKGDW------ERYQYYFQLLDEIRIR 310 (327)
Q Consensus 280 ~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~~ 310 (327)
++ +.+|.++++|+| ...+.+.+++.++..+
T Consensus 141 al-~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~ 176 (207)
T PRK13539 141 LL-VSNRPIWILDEPTAALDAAAVALFAELIRAHLAQ 176 (207)
T ss_pred HH-hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHC
Confidence 99 899999999965 3455556666666443
|
|
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.76 E-value=2e-19 Score=162.11 Aligned_cols=151 Identities=20% Similarity=0.280 Sum_probs=102.6
Q ss_pred CceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccccc
Q 020346 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (327)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~ 215 (327)
++.+.++|.. .+.++++.+ +|++++|+|+||+|||||+++|+| +++|++|+|+++|.++...+.
T Consensus 3 ~~~l~~~~~~--~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G------------~~~~~~G~i~~~g~~~~~~~~- 67 (213)
T TIGR01277 3 LDKVRYEYEH--LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAG------------FIEPASGSIKVNDQSHTGLAP- 67 (213)
T ss_pred EEeeeEEeCC--cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhc------------CCCCCCcEEEECCEEcccCCh-
Confidence 4556666653 456888887 999999999999999999999999 899999999999998754321
Q ss_pred CCCcceeeEEEEEEEccCCC----eEEeCcccCC-cccc--ccCHhH---------HhhhhHHHHHhcCccccccccccc
Q 020346 216 SGRGKHTTRHVSLLPLSGGG----YLADTPGFNQ-PSLL--KVTKQS---------LAQTFPEIKEMLKANEPAKCSFNN 279 (327)
Q Consensus 216 ~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~-~~l~--~~~~~~---------l~~~~~~~~~~LSgGq~q~~~~~~ 279 (327)
..+.+++++|.+.. ++.|+..+.. .... ...... +.+........||+||+||+.+++
T Consensus 68 ------~~~~i~~v~q~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~lar 141 (213)
T TIGR01277 68 ------YQRPVSMLFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALAR 141 (213)
T ss_pred ------hccceEEEeccCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHH
Confidence 34679999997532 3333332210 0000 000001 111111112349999999999999
Q ss_pred cccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 280 CLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 280 ~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
++ +.+|.++++|+| .....+.++++++..
T Consensus 142 al-~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~ 176 (213)
T TIGR01277 142 CL-VRPNPILLLDEPFSALDPLLREEMLALVKQLCS 176 (213)
T ss_pred HH-hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHH
Confidence 99 899999999965 455666666766654
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.3e-19 Score=169.15 Aligned_cols=159 Identities=13% Similarity=0.226 Sum_probs=108.1
Q ss_pred CCceeeccCcc-----hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceee
Q 020346 136 GYEPLFCSVES-----KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRV 209 (327)
Q Consensus 136 ~~~~~~~s~~~-----~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v 209 (327)
.++.+.++|.. ..+++++++.+ +|++++|+|+||||||||+++|+| +++|++|+|+++|.++
T Consensus 4 ~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~G------------l~~p~~G~i~~~g~~i 71 (286)
T PRK13646 4 RFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINA------------LLKPTTGTVTVDDITI 71 (286)
T ss_pred EEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhc------------CCCCCCcEEEECCEEC
Confidence 35667777853 35999999998 999999999999999999999999 8999999999999988
Q ss_pred ccccccCCCcceeeEEEEEEEccCCC-----eEEeCcccCCccccccCHh-------------HHh-hhhHHHHHhcCcc
Q 020346 210 GEVSTKSGRGKHTTRHVSLLPLSGGG-----YLADTPGFNQPSLLKVTKQ-------------SLA-QTFPEIKEMLKAN 270 (327)
Q Consensus 210 ~~~s~~~~~g~~tt~~i~~v~q~~~~-----~i~Dtpg~~~~~l~~~~~~-------------~l~-~~~~~~~~~LSgG 270 (327)
...+... ..+..++.++++||++.. ++.|+..+..... .+... .+. .........||||
T Consensus 72 ~~~~~~~-~~~~~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~-~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgG 149 (286)
T PRK13646 72 THKTKDK-YIRPVRKRIGMVFQFPESQLFEDTVEREIIFGPKNF-KMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGG 149 (286)
T ss_pred ccccccc-hHHHHHhheEEEecChHhccchhhHHHHHHhhHHHc-CCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHH
Confidence 6532110 011246789999997521 2223222210000 00100 110 0001112349999
Q ss_pred ccccccccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 271 EPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 271 q~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
|+||+++++++ +.+|.++|+|+| .....+.++++++..
T Consensus 150 q~qrv~laraL-~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~ 193 (286)
T PRK13646 150 QMRKIAIVSIL-AMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQT 193 (286)
T ss_pred HHHHHHHHHHH-HhCCCEEEEECCcccCCHHHHHHHHHHHHHHHH
Confidence 99999999999 999999999954 455566677777654
|
|
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.9e-19 Score=168.24 Aligned_cols=157 Identities=17% Similarity=0.231 Sum_probs=106.8
Q ss_pred CCceeeccCc-chhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccc
Q 020346 136 GYEPLFCSVE-SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (327)
Q Consensus 136 ~~~~~~~s~~-~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s 213 (327)
.++.+.++|. ...+++++++.+ +|++++|+|+||+|||||+++|+| +++|++|+|.++|.++...+
T Consensus 7 ~~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~G------------l~~p~~G~i~i~g~~~~~~~ 74 (283)
T PRK13636 7 KVEELNYNYSDGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNG------------ILKPSSGRILFDGKPIDYSR 74 (283)
T ss_pred EEEeEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhc------------CCCCCccEEEECCEECCCCc
Confidence 4567888885 467999999998 999999999999999999999999 89999999999999874211
Q ss_pred ccCCCcceeeEEEEEEEccCCCe-----EEeCcccCCccccccCHhH-------------HhhhhHHHHHhcCccccccc
Q 020346 214 TKSGRGKHTTRHVSLLPLSGGGY-----LADTPGFNQPSLLKVTKQS-------------LAQTFPEIKEMLKANEPAKC 275 (327)
Q Consensus 214 ~~~~~g~~tt~~i~~v~q~~~~~-----i~Dtpg~~~~~l~~~~~~~-------------l~~~~~~~~~~LSgGq~q~~ 275 (327)
.. .+..+..++|+||++... +.|+..+..... ...... +..........||+||+||+
T Consensus 75 ~~---~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl 150 (283)
T PRK13636 75 KG---LMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNL-KLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRV 150 (283)
T ss_pred ch---HHHHHhhEEEEecCcchhhccccHHHHHHhHHHHc-CCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHH
Confidence 10 011456799999975321 222221110000 011000 10011111234999999999
Q ss_pred cccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 276 SFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 276 ~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
.+++|+ +.+|.++|+|+| .-.+.+.++++++..
T Consensus 151 ~laraL-~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~ 189 (283)
T PRK13636 151 AIAGVL-VMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQK 189 (283)
T ss_pred HHHHHH-HcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHH
Confidence 999999 999999999955 455556666666644
|
|
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.8e-19 Score=166.17 Aligned_cols=154 Identities=17% Similarity=0.216 Sum_probs=105.8
Q ss_pred CCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCccccccccc-----ccccceeecceee
Q 020346 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFE-----PILGSKWFEDQRV 209 (327)
Q Consensus 136 ~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~-----p~~G~i~~~g~~v 209 (327)
.++.+.++|++..+++++++.+ +|++++|+|+||||||||+++|+| +++ |++|+|.++|.++
T Consensus 5 ~~~~l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G------------~~~~~~~~~~~G~i~~~g~~i 72 (250)
T PRK14247 5 EIRDLKVSFGQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNR------------LIELYPEARVSGEVYLDGQDI 72 (250)
T ss_pred EEEeeEEEECCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhc------------cCCCCCCCCCceEEEECCEEC
Confidence 4567777887777999999998 999999999999999999999999 666 4799999999987
Q ss_pred ccccccCCCcceeeEEEEEEEccCCC----eEEeCcccCCc--cc--cccC-HhHHhhh-------------hHHHHHhc
Q 020346 210 GEVSTKSGRGKHTTRHVSLLPLSGGG----YLADTPGFNQP--SL--LKVT-KQSLAQT-------------FPEIKEML 267 (327)
Q Consensus 210 ~~~s~~~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~--~l--~~~~-~~~l~~~-------------~~~~~~~L 267 (327)
...+... .+..++|+||.+.. ++.|+..+... .. ..-+ ...+... .......|
T Consensus 73 ~~~~~~~-----~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~L 147 (250)
T PRK14247 73 FKMDVIE-----LRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKL 147 (250)
T ss_pred CcCCHHH-----HhccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccC
Confidence 6543222 45679999997532 33333321100 00 0000 0011110 01112349
Q ss_pred CccccccccccccccccCCceEEcccH------HHHHHHHHHHHHH
Q 020346 268 KANEPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEI 307 (327)
Q Consensus 268 SgGq~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~ 307 (327)
||||+||+++++++ +.+|.++++|+| ...+...++++++
T Consensus 148 SgG~~qrv~laral-~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~ 192 (250)
T PRK14247 148 SGGQQQRLCIARAL-AFQPEVLLADEPTANLDPENTAKIESLFLEL 192 (250)
T ss_pred CHHHHHHHHHHHHH-hcCCCEEEEcCCCccCCHHHHHHHHHHHHHH
Confidence 99999999999999 899999999965 3445555666655
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.6e-19 Score=202.47 Aligned_cols=138 Identities=21% Similarity=0.187 Sum_probs=107.7
Q ss_pred cCCceeeccCcc--hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecc
Q 020346 135 WGYEPLFCSVES--KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (327)
Q Consensus 135 ~~~~~~~~s~~~--~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~ 211 (327)
+.|+.+.++|.. +.+|+++++.+ +|+++||||+||||||||+++|.| +++|++|+|.+||.++.+
T Consensus 1235 I~f~nVsf~Y~~~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~r------------l~~p~~G~I~IdG~di~~ 1302 (1495)
T PLN03232 1235 IKFEDVHLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFR------------IVELEKGRIMIDDCDVAK 1302 (1495)
T ss_pred EEEEEEEEEECCCCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhC------------CCcCCCceEEECCEEhhh
Confidence 568899999953 47999999998 999999999999999999999999 999999999999999999
Q ss_pred ccccCCCcceeeEEEEEEEccC---CCeEEeCcccCCccccccCHhHHhh------hhHHH--------------HHhcC
Q 020346 212 VSTKSGRGKHTTRHVSLLPLSG---GGYLADTPGFNQPSLLKVTKQSLAQ------TFPEI--------------KEMLK 268 (327)
Q Consensus 212 ~s~~~~~g~~tt~~i~~v~q~~---~~~i~Dtpg~~~~~l~~~~~~~l~~------~~~~~--------------~~~LS 268 (327)
++... .+++++++||++ ++++.|+...... .+.+++.+ ..+.+ -..||
T Consensus 1303 i~~~~-----lR~~i~iVpQdp~LF~gTIr~NL~~~~~----~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LS 1373 (1495)
T PLN03232 1303 FGLTD-----LRRVLSIIPQSPVLFSGTVRFNIDPFSE----HNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFS 1373 (1495)
T ss_pred CCHHH-----HHhhcEEECCCCeeeCccHHHHcCCCCC----CCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCC
Confidence 88655 788999999986 3344444332211 11111111 11111 12499
Q ss_pred ccccccccccccccccCCceEEcccH
Q 020346 269 ANEPAKCSFNNCLHLGEPGCVVKGDW 294 (327)
Q Consensus 269 gGq~q~~~~~~~~h~~ep~~~v~~~~ 294 (327)
|||+||+++|+++ +.+|.++|+||+
T Consensus 1374 gGQrQrlaLARAL-Lr~~~ILILDEA 1398 (1495)
T PLN03232 1374 VGQRQLLSLARAL-LRRSKILVLDEA 1398 (1495)
T ss_pred HHHHHHHHHHHHH-HhCCCEEEEECC
Confidence 9999999999999 999999999954
|
|
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.6e-19 Score=167.35 Aligned_cols=156 Identities=14% Similarity=0.249 Sum_probs=106.5
Q ss_pred CCceeeccCcc------hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeeccee
Q 020346 136 GYEPLFCSVES------KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQR 208 (327)
Q Consensus 136 ~~~~~~~s~~~------~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~ 208 (327)
.++.+.++|.+ +.+++++++.+ +|++++|+|+||+|||||+++|+| +++|++|+|.++|.+
T Consensus 6 ~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G------------l~~~~~G~i~i~g~~ 73 (280)
T PRK13633 6 KCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNA------------LLIPSEGKVYVDGLD 73 (280)
T ss_pred EEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhC------------CCCCCCceEEECCEe
Confidence 35677778853 46999999998 999999999999999999999999 899999999999998
Q ss_pred eccccccCCCcceeeEEEEEEEccCCCeE-----EeCcccCCccccccCHh-------------HHhhhhHHHHHhcCcc
Q 020346 209 VGEVSTKSGRGKHTTRHVSLLPLSGGGYL-----ADTPGFNQPSLLKVTKQ-------------SLAQTFPEIKEMLKAN 270 (327)
Q Consensus 209 v~~~s~~~~~g~~tt~~i~~v~q~~~~~i-----~Dtpg~~~~~l~~~~~~-------------~l~~~~~~~~~~LSgG 270 (327)
+...+... ..++.++++||++...+ .|+..+.... ..+... .+..........||+|
T Consensus 74 i~~~~~~~----~~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~-~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G 148 (280)
T PRK13633 74 TSDEENLW----DIRNKAGMVFQNPDNQIVATIVEEDVAFGPEN-LGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGG 148 (280)
T ss_pred ccccccHH----HHhhheEEEecChhhhhccccHHHHHHhhHhh-cCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHH
Confidence 76432100 13567999999753211 1222221000 001100 0001111112349999
Q ss_pred ccccccccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 271 EPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 271 q~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
|+||+.+++++ +.+|.++|+|+| .-.+.+.+++.++..
T Consensus 149 ~~qrv~laral-~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~ 192 (280)
T PRK13633 149 QKQRVAIAGIL-AMRPECIIFDEPTAMLDPSGRREVVNTIKELNK 192 (280)
T ss_pred HHHHHHHHHHH-HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence 99999999999 999999999965 345555566666643
|
|
| >COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.76 E-value=5e-20 Score=159.33 Aligned_cols=133 Identities=22% Similarity=0.265 Sum_probs=99.1
Q ss_pred chhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcceeeE
Q 020346 146 SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTR 224 (327)
Q Consensus 146 ~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~tt~ 224 (327)
+-.+++++++.+ +|++++||||||+|||||+-.|+| +.+|++|+|.+.|++...+.. +++.....+
T Consensus 22 ~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAG------------Ld~~ssGeV~l~G~~L~~ldE-d~rA~~R~~ 88 (228)
T COG4181 22 ELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAG------------LDDPSSGEVRLLGQPLHKLDE-DARAALRAR 88 (228)
T ss_pred ceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhc------------CCCCCCceEEEcCcchhhcCH-HHHHHhhcc
Confidence 345788999987 999999999999999999999999 999999999999999998874 456666788
Q ss_pred EEEEEEccCC----CeEEeCcccCCc---------------cccccCHhHHhhhhHHHHHhcCccccccccccccccccC
Q 020346 225 HVSLLPLSGG----GYLADTPGFNQP---------------SLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGE 285 (327)
Q Consensus 225 ~i~~v~q~~~----~~i~Dtpg~~~~---------------~l~~~~~~~l~~~~~~~~~~LSgGq~q~~~~~~~~h~~e 285 (327)
++++|+|.+. ++-.++...... .++.+...+-...+|.. |||||+||+++++++ ..+
T Consensus 89 ~vGfVFQSF~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~q---LSGGEQQRVAiARAf-a~~ 164 (228)
T COG4181 89 HVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPAQ---LSGGEQQRVALARAF-AGR 164 (228)
T ss_pred ceeEEEEeeeccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCccc---cCchHHHHHHHHHHh-cCC
Confidence 9999999752 111122111100 01112222222233444 999999999999999 999
Q ss_pred CceEEcccHH
Q 020346 286 PGCVVKGDWE 295 (327)
Q Consensus 286 p~~~v~~~~~ 295 (327)
|++++.|+|.
T Consensus 165 P~vLfADEPT 174 (228)
T COG4181 165 PDVLFADEPT 174 (228)
T ss_pred CCEEeccCCC
Confidence 9999988663
|
|
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=3e-19 Score=166.75 Aligned_cols=156 Identities=13% Similarity=0.205 Sum_probs=106.6
Q ss_pred cCCceeeccCcc--hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecc
Q 020346 135 WGYEPLFCSVES--KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (327)
Q Consensus 135 ~~~~~~~~s~~~--~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~ 211 (327)
+.++.+.++|.+ ..+++++++.+ +|++++|+||||+|||||+++|+| +++|++|+|+++|.++..
T Consensus 8 l~i~~l~~~~~~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~G------------l~~~~~G~i~~~g~~~~~ 75 (269)
T PRK13648 8 IVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIG------------IEKVKSGEIFYNNQAITD 75 (269)
T ss_pred EEEEEEEEEcCCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhc------------CCCCCceEEEECCEECCc
Confidence 345677778864 35899999998 999999999999999999999999 899999999999998754
Q ss_pred ccccCCCcceeeEEEEEEEccCCCe-----EEeCcccCCccccccCHh-------HHhhh------hHHHHHhcCccccc
Q 020346 212 VSTKSGRGKHTTRHVSLLPLSGGGY-----LADTPGFNQPSLLKVTKQ-------SLAQT------FPEIKEMLKANEPA 273 (327)
Q Consensus 212 ~s~~~~~g~~tt~~i~~v~q~~~~~-----i~Dtpg~~~~~l~~~~~~-------~l~~~------~~~~~~~LSgGq~q 273 (327)
.+... .++.++|++|++... +.++..+..... ..... .+.+. .......||+||+|
T Consensus 76 ~~~~~-----~~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~q 149 (269)
T PRK13648 76 DNFEK-----LRKHIGIVFQNPDNQFVGSIVKYDVAFGLENH-AVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQ 149 (269)
T ss_pred CCHHH-----HHhheeEEEeChHHhcccccHHHHHHhhHHhc-CCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHH
Confidence 33211 456799999975311 111111110000 00000 00110 01112249999999
Q ss_pred cccccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 274 KCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 274 ~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
|+.+++++ +.+|.++|+|+| ...+.+.+++.++..
T Consensus 150 rl~laral-~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~ 190 (269)
T PRK13648 150 RVAIAGVL-ALNPSVIILDEATSMLDPDARQNLLDLVRKVKS 190 (269)
T ss_pred HHHHHHHH-HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence 99999999 999999999965 455566666766643
|
|
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.4e-19 Score=167.31 Aligned_cols=156 Identities=17% Similarity=0.213 Sum_probs=103.9
Q ss_pred CCceeeccCcc---------hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeec
Q 020346 136 GYEPLFCSVES---------KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205 (327)
Q Consensus 136 ~~~~~~~s~~~---------~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~ 205 (327)
.++.+.++|+. ..+++++++.+ +|++++|+|+||+|||||+++|+| +++|++|+|.++
T Consensus 6 ~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G------------l~~p~~G~i~~~ 73 (267)
T PRK15112 6 EVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAG------------MIEPTSGELLID 73 (267)
T ss_pred EEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhC------------CCCCCCCEEEEC
Confidence 34566667742 35899999998 999999999999999999999999 899999999999
Q ss_pred ceeeccccccCCCcceeeEEEEEEEccCCCeEEe------CcccC---CccccccC----HhHHhhhh---HHH----HH
Q 020346 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLAD------TPGFN---QPSLLKVT----KQSLAQTF---PEI----KE 265 (327)
Q Consensus 206 g~~v~~~s~~~~~g~~tt~~i~~v~q~~~~~i~D------tpg~~---~~~l~~~~----~~~l~~~~---~~~----~~ 265 (327)
|.++...... ...+.++|+||.+..++.+ ...+. ........ ..++.+.+ +.. ..
T Consensus 74 g~~~~~~~~~-----~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 148 (267)
T PRK15112 74 DHPLHFGDYS-----YRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPH 148 (267)
T ss_pred CEECCCCchh-----hHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCch
Confidence 9887532211 1335689999975311111 10000 00000000 00111110 111 23
Q ss_pred hcCccccccccccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 266 MLKANEPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 266 ~LSgGq~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
.||+||+||+++++++ +.+|.++|+|+| ...+.+.+++.++..
T Consensus 149 ~LS~G~~qrv~laral-~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~ 197 (267)
T PRK15112 149 MLAPGQKQRLGLARAL-ILRPKVIIADEALASLDMSMRSQLINLMLELQE 197 (267)
T ss_pred hcCHHHHHHHHHHHHH-HhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH
Confidence 4999999999999999 999999999965 455566666666644
|
|
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=8.7e-20 Score=175.29 Aligned_cols=157 Identities=18% Similarity=0.172 Sum_probs=105.6
Q ss_pred CCceeeccCcc----hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCccccccccc----ccccceeecc
Q 020346 136 GYEPLFCSVES----KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFE----PILGSKWFED 206 (327)
Q Consensus 136 ~~~~~~~s~~~----~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~----p~~G~i~~~g 206 (327)
.++.+.++|.. ..+++++++.+ +|++++|+|+||||||||+++|+| +++ |++|+|+++|
T Consensus 5 ~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~G------------ll~~~~~~~~G~i~~~G 72 (326)
T PRK11022 5 NVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMG------------LIDYPGRVMAEKLEFNG 72 (326)
T ss_pred EEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHc------------CCCCCCCCcceEEEECC
Confidence 34566667754 35899999998 999999999999999999999999 666 5899999999
Q ss_pred eeeccccccCCCcceeeEEEEEEEccCCCeEEe--Ccc--------cC-C-c----------cccccCHh---HHhhhhH
Q 020346 207 QRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLAD--TPG--------FN-Q-P----------SLLKVTKQ---SLAQTFP 261 (327)
Q Consensus 207 ~~v~~~s~~~~~g~~tt~~i~~v~q~~~~~i~D--tpg--------~~-~-~----------~l~~~~~~---~l~~~~~ 261 (327)
+++...+.+.. .+...+.++|+||++...+.. +.+ .. . . .++.+.+. ...+.++
T Consensus 73 ~~i~~~~~~~~-~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p 151 (326)
T PRK11022 73 QDLQRISEKER-RNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYP 151 (326)
T ss_pred EECCcCCHHHH-HHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCc
Confidence 99876653321 111234799999975321211 111 00 0 0 00111110 1111222
Q ss_pred HHHHhcCccccccccccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 262 EIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 262 ~~~~~LSgGq~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
..|||||+||+.+++++ +.+|+++|.|+| .-.....++++++..
T Consensus 152 ---~~LSgGq~QRv~iArAL-~~~P~llilDEPts~LD~~~~~~il~lL~~l~~ 201 (326)
T PRK11022 152 ---HQLSGGMSQRVMIAMAI-ACRPKLLIADEPTTALDVTIQAQIIELLLELQQ 201 (326)
T ss_pred ---hhCCHHHHHHHHHHHHH-HhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Confidence 23999999999999999 999999999955 455556666666644
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=8.4e-20 Score=184.93 Aligned_cols=158 Identities=13% Similarity=0.174 Sum_probs=109.8
Q ss_pred CCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccc
Q 020346 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (327)
Q Consensus 136 ~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~ 214 (327)
.++.+.++|++..+++++++.+ +|++++|+|+||||||||+++|+| +++|++|+|+++|.++...+.
T Consensus 7 ~~~~l~~~~~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~G------------l~~p~~G~i~~~g~~i~~~~~ 74 (510)
T PRK09700 7 SMAGIGKSFGPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSG------------IHEPTKGTITINNINYNKLDH 74 (510)
T ss_pred EEeeeEEEcCCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcC------------CcCCCccEEEECCEECCCCCH
Confidence 4567788887778999999998 999999999999999999999999 889999999999998765432
Q ss_pred cCCCcceeeEEEEEEEccCCC----eEEeCcccCCcc---ccc---cCH----hHHhh---------hhHHHHHhcCccc
Q 020346 215 KSGRGKHTTRHVSLLPLSGGG----YLADTPGFNQPS---LLK---VTK----QSLAQ---------TFPEIKEMLKANE 271 (327)
Q Consensus 215 ~~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~~---l~~---~~~----~~l~~---------~~~~~~~~LSgGq 271 (327)
... ..+.++|++|.+.. ++.|+..+.... ... +.. ..... ........|||||
T Consensus 75 ~~~----~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~ 150 (510)
T PRK09700 75 KLA----AQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISH 150 (510)
T ss_pred HHH----HHCCeEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHH
Confidence 110 23468999997422 233332221100 000 000 00111 1111233499999
Q ss_pred cccccccccccccCCceEEcccH------HHHHHHHHHHHHHHHh
Q 020346 272 PAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRIR 310 (327)
Q Consensus 272 ~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~~ 310 (327)
+||+.|++++ +.+|.++|+|+| .....+.++++++.+.
T Consensus 151 ~qrv~ia~al-~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~ 194 (510)
T PRK09700 151 KQMLEIAKTL-MLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKE 194 (510)
T ss_pred HHHHHHHHHH-hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Confidence 9999999999 999999999955 4556666777776543
|
|
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.9e-19 Score=168.91 Aligned_cols=158 Identities=15% Similarity=0.176 Sum_probs=104.7
Q ss_pred CceeeccCcc-----hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeec
Q 020346 137 YEPLFCSVES-----KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (327)
Q Consensus 137 ~~~~~~s~~~-----~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~ 210 (327)
++.+.++|.. ..+++++++.+ +|++++|+|+||||||||+++|+| +++|++|+|.++|.++.
T Consensus 5 ~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G------------l~~p~~G~i~~~g~~i~ 72 (280)
T PRK13649 5 LQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNG------------LHVPTQGSVRVDDTLIT 72 (280)
T ss_pred EEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhC------------CCCCCceEEEECCEEcc
Confidence 4567777753 35899999998 999999999999999999999999 89999999999999876
Q ss_pred cccccCCCcceeeEEEEEEEccCCC-----eEEeCcccCCccccccCHh-------HHhhh--h-HH----HHHhcCccc
Q 020346 211 EVSTKSGRGKHTTRHVSLLPLSGGG-----YLADTPGFNQPSLLKVTKQ-------SLAQT--F-PE----IKEMLKANE 271 (327)
Q Consensus 211 ~~s~~~~~g~~tt~~i~~v~q~~~~-----~i~Dtpg~~~~~l~~~~~~-------~l~~~--~-~~----~~~~LSgGq 271 (327)
..+... .....++.++|+||.+.. ++.|+..+... ....... ++.+. . +. ....|||||
T Consensus 73 ~~~~~~-~~~~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~ 150 (280)
T PRK13649 73 STSKNK-DIKQIRKKVGLVFQFPESQLFEETVLKDVAFGPQ-NFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQ 150 (280)
T ss_pred cccccc-CHHHHHhheEEEeeChhhhhccccHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHH
Confidence 532100 001134678999997421 22222211100 0000000 00000 0 11 123499999
Q ss_pred cccccccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 272 PAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 272 ~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
+||+.+++++ +.+|.++|+|+| .-.+.+.+++.++..
T Consensus 151 ~qrv~la~al-~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~ 193 (280)
T PRK13649 151 MRRVAIAGIL-AMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQ 193 (280)
T ss_pred HHHHHHHHHH-HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence 9999999999 999999999965 355555566666543
|
|
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=2e-19 Score=173.14 Aligned_cols=145 Identities=17% Similarity=0.205 Sum_probs=100.0
Q ss_pred hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcceeeEE
Q 020346 147 KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRH 225 (327)
Q Consensus 147 ~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~tt~~ 225 (327)
..+++++++.+ +|++++|+|+||||||||+++|+| +++|++|+|+++|.++...+.... +..++.
T Consensus 34 ~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~G------------l~~p~~G~I~~~G~~i~~~~~~~~--~~~r~~ 99 (331)
T PRK15079 34 LKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIG------------LVKATDGEVAWLGKDLLGMKDDEW--RAVRSD 99 (331)
T ss_pred eEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHC------------CCCCCCcEEEECCEECCcCCHHHH--HHHhCc
Confidence 35789999998 999999999999999999999999 889999999999998876543210 113457
Q ss_pred EEEEEccCCC------eEEeCcccCC--c--cc-------------cccCH-hHHhhhhHHHHHhcCccccccccccccc
Q 020346 226 VSLLPLSGGG------YLADTPGFNQ--P--SL-------------LKVTK-QSLAQTFPEIKEMLKANEPAKCSFNNCL 281 (327)
Q Consensus 226 i~~v~q~~~~------~i~Dtpg~~~--~--~l-------------~~~~~-~~l~~~~~~~~~~LSgGq~q~~~~~~~~ 281 (327)
++|++|++.. .+.|+..+.. . .+ +.+.+ .+..+.++ ..|||||+||+.+++++
T Consensus 100 i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p---~~LSgG~~QRv~iArAL 176 (331)
T PRK15079 100 IQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYP---HEFSGGQCQRIGIARAL 176 (331)
T ss_pred eEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCc---ccCCHHHHHHHHHHHHH
Confidence 9999998521 1222211100 0 00 00111 01112222 23999999999999999
Q ss_pred cccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 282 HLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 282 h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
+.+|+++|.|+| .-.....++++++..
T Consensus 177 -~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~ 209 (331)
T PRK15079 177 -ILEPKLIICDEPVSALDVSIQAQVVNLLQQLQR 209 (331)
T ss_pred -hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHH
Confidence 999999999965 344455566666644
|
|
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.7e-19 Score=170.42 Aligned_cols=158 Identities=17% Similarity=0.177 Sum_probs=106.2
Q ss_pred CCceeeccCcch-----hhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceee
Q 020346 136 GYEPLFCSVESK-----LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRV 209 (327)
Q Consensus 136 ~~~~~~~s~~~~-----~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v 209 (327)
.++.+.++|.+. .+++++++.+ +|++++|+|+||||||||+++|+| +++|++|+|+++|.+.
T Consensus 4 ~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~G------------l~~p~~G~i~~~g~~~ 71 (305)
T PRK13651 4 KVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNA------------LLLPDTGTIEWIFKDE 71 (305)
T ss_pred EEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhC------------CCCCCCcEEEEeceec
Confidence 356677777542 5899999998 999999999999999999999999 8999999999998765
Q ss_pred ccccc-------------cC------CCcceeeEEEEEEEccCCCeE-----EeCcccCCcc---------------ccc
Q 020346 210 GEVST-------------KS------GRGKHTTRHVSLLPLSGGGYL-----ADTPGFNQPS---------------LLK 250 (327)
Q Consensus 210 ~~~s~-------------~~------~~g~~tt~~i~~v~q~~~~~i-----~Dtpg~~~~~---------------l~~ 250 (327)
...+. .. ......++.++|+||++...+ .|+..+.... ++.
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~ 151 (305)
T PRK13651 72 KNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIEL 151 (305)
T ss_pred ccccccccccccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHH
Confidence 22110 00 000124577999999753222 2222221100 000
Q ss_pred cCHh-HHhhhhHHHHHhcCccccccccccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 251 VTKQ-SLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 251 ~~~~-~l~~~~~~~~~~LSgGq~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
+... .+.+.. ...|||||+||+++++++ +.+|+++|+|+| ...+.+.++++++..
T Consensus 152 ~gL~~~~~~~~---~~~LSgGqkqrvalA~aL-~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~ 213 (305)
T PRK13651 152 VGLDESYLQRS---PFELSGGQKRRVALAGIL-AMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNK 213 (305)
T ss_pred cCCChhhhhCC---hhhCCHHHHHHHHHHHHH-HhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Confidence 1110 111112 234999999999999999 999999999955 456666677777654
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.5e-19 Score=181.13 Aligned_cols=157 Identities=13% Similarity=0.153 Sum_probs=108.7
Q ss_pred CCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccc
Q 020346 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (327)
Q Consensus 136 ~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~ 214 (327)
.++.+.++|++..+++++++.+ +|++++|+||||||||||+++|+| +++|++|+|.++|.++...+.
T Consensus 6 ~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G------------~~~p~~G~i~~~g~~~~~~~~ 73 (501)
T PRK10762 6 QLKGIDKAFPGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTG------------IYTRDAGSILYLGKEVTFNGP 73 (501)
T ss_pred EEeeeEEEeCCeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhC------------CCCCCCcEEEECCEECCCCCH
Confidence 3567788887778999999998 999999999999999999999999 889999999999988754322
Q ss_pred cCCCcceeeEEEEEEEccCC----CeEEeCcccCCcc---ccccCHh----HHhh---------hhHHHHHhcCcccccc
Q 020346 215 KSGRGKHTTRHVSLLPLSGG----GYLADTPGFNQPS---LLKVTKQ----SLAQ---------TFPEIKEMLKANEPAK 274 (327)
Q Consensus 215 ~~~~g~~tt~~i~~v~q~~~----~~i~Dtpg~~~~~---l~~~~~~----~l~~---------~~~~~~~~LSgGq~q~ 274 (327)
... ..+.+++++|++. .++.|+..+.... ....... .... ........|||||+||
T Consensus 74 ~~~----~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qr 149 (501)
T PRK10762 74 KSS----QEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQM 149 (501)
T ss_pred HHH----HhCCEEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHH
Confidence 110 2346899999742 2333333221100 0000000 0111 1111124599999999
Q ss_pred ccccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 275 CSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 275 ~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
+.+++++ +.+|.++++|+| ...+.+.++++++..
T Consensus 150 v~la~al-~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~ 189 (501)
T PRK10762 150 VEIAKVL-SFESKVIIMDEPTDALTDTETESLFRVIRELKS 189 (501)
T ss_pred HHHHHHH-hcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHH
Confidence 9999999 999999999965 455566667777644
|
|
| >PRK15056 manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.4e-19 Score=169.28 Aligned_cols=154 Identities=15% Similarity=0.140 Sum_probs=104.6
Q ss_pred cCCceeeccCc-chhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccc
Q 020346 135 WGYEPLFCSVE-SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV 212 (327)
Q Consensus 135 ~~~~~~~~s~~-~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~ 212 (327)
+.++.+.++|. +..+++++++.+ +|++++|+|+||||||||+++|+| +++|++|+|.++|.++...
T Consensus 7 l~~~~l~~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~G------------l~~p~~G~i~~~g~~i~~~ 74 (272)
T PRK15056 7 IVVNDVTVTWRNGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMG------------FVRLASGKISILGQPTRQA 74 (272)
T ss_pred EEEEeEEEEecCCcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhC------------CCCCCceEEEECCEEhHHh
Confidence 45677888885 467899999998 999999999999999999999999 8899999999999886421
Q ss_pred cccCCCcceeeEEEEEEEccCCC------eEEeCcccCCc---cc---cccC-HhHHhhhh---------HHHHHhcCcc
Q 020346 213 STKSGRGKHTTRHVSLLPLSGGG------YLADTPGFNQP---SL---LKVT-KQSLAQTF---------PEIKEMLKAN 270 (327)
Q Consensus 213 s~~~~~g~~tt~~i~~v~q~~~~------~i~Dtpg~~~~---~l---~~~~-~~~l~~~~---------~~~~~~LSgG 270 (327)
. ....++|+||.+.. .+.++..+... .. ..-. ........ ......||||
T Consensus 75 ~--------~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG 146 (272)
T PRK15056 75 L--------QKNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGG 146 (272)
T ss_pred h--------ccceEEEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHH
Confidence 0 22458999987532 11222111000 00 0000 00001100 0011239999
Q ss_pred ccccccccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 271 EPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 271 q~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
|+||+.+++|+ +.+|.++|+|+| ...+.+.+++.++..
T Consensus 147 ~~qrv~laraL-~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~ 190 (272)
T PRK15056 147 QKKRVFLARAI-AQQGQVILLDEPFTGVDVKTEARIISLLRELRD 190 (272)
T ss_pred HHHHHHHHHHH-hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh
Confidence 99999999999 899999999965 455556666666644
|
|
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.6e-19 Score=163.41 Aligned_cols=151 Identities=20% Similarity=0.291 Sum_probs=101.5
Q ss_pred CceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccccc
Q 020346 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (327)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~ 215 (327)
++.+.++|.... .++++.+ +|++++|+|+||+|||||+++|+| +++|++|+|.++|.++...+.
T Consensus 4 ~~~l~~~~~~~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G------------l~~~~~G~i~~~g~~~~~~~~- 68 (232)
T PRK10771 4 LTDITWLYHHLP--MRFDLTVERGERVAILGPSGAGKSTLLNLIAG------------FLTPASGSLTLNGQDHTTTPP- 68 (232)
T ss_pred EEEEEEEECCcc--ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhC------------CCCCCCceEEECCeecCcCCh-
Confidence 456777776433 3788887 999999999999999999999999 899999999999998764332
Q ss_pred CCCcceeeEEEEEEEccCCC----eEEeCcccCC-ccc--cccC---HhHHhhh------hHHHHHhcCccccccccccc
Q 020346 216 SGRGKHTTRHVSLLPLSGGG----YLADTPGFNQ-PSL--LKVT---KQSLAQT------FPEIKEMLKANEPAKCSFNN 279 (327)
Q Consensus 216 ~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~-~~l--~~~~---~~~l~~~------~~~~~~~LSgGq~q~~~~~~ 279 (327)
..+.++|+||.+.. ++.++..+.. ... .... ..++... .......||+||+||+.+++
T Consensus 69 ------~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lar 142 (232)
T PRK10771 69 ------SRRPVSMLFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALAR 142 (232)
T ss_pred ------hhccEEEEecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHH
Confidence 23468999987532 2223222110 000 0000 0011110 11111249999999999999
Q ss_pred cccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 280 CLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 280 ~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
++ +.+|.++++|+| ...+.+.++++++..
T Consensus 143 al-~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~ 177 (232)
T PRK10771 143 CL-VREQPILLLDEPFSALDPALRQEMLTLVSQVCQ 177 (232)
T ss_pred HH-hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence 99 999999999965 455566666666643
|
|
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.3e-19 Score=170.13 Aligned_cols=155 Identities=14% Similarity=0.210 Sum_probs=106.4
Q ss_pred CCceeeccCcc---hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecc
Q 020346 136 GYEPLFCSVES---KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (327)
Q Consensus 136 ~~~~~~~s~~~---~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~ 211 (327)
.++.+.++|.+ ..+++++++.+ +|++++|+|+||+|||||+++|+| +++|++|+|.++|.++..
T Consensus 6 ~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~G------------l~~~~~G~i~~~g~~i~~ 73 (277)
T PRK13642 6 EVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDG------------LFEEFEGKVKIDGELLTA 73 (277)
T ss_pred EEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhc------------CCCCCCCEEEECCEECCc
Confidence 35677778863 24899999998 999999999999999999999999 899999999999998764
Q ss_pred ccccCCCcceeeEEEEEEEccCC-----CeEEeCcccCCccccccCHhHH----hhh---------hHHHHHhcCccccc
Q 020346 212 VSTKSGRGKHTTRHVSLLPLSGG-----GYLADTPGFNQPSLLKVTKQSL----AQT---------FPEIKEMLKANEPA 273 (327)
Q Consensus 212 ~s~~~~~g~~tt~~i~~v~q~~~-----~~i~Dtpg~~~~~l~~~~~~~l----~~~---------~~~~~~~LSgGq~q 273 (327)
.+... .++.++|++|++. ..+.|+..+.... ........ ... .......|||||+|
T Consensus 74 ~~~~~-----~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~q 147 (277)
T PRK13642 74 ENVWN-----LRRKIGMVFQNPDNQFVGATVEDDVAFGMEN-QGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQ 147 (277)
T ss_pred CCHHH-----HhcceEEEEECHHHhhccCCHHHHHHhhHHH-cCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHH
Confidence 33221 4568999999752 1222222211000 00011110 000 00111239999999
Q ss_pred cccccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 274 KCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 274 ~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
|+.+++++ +.+|.++|+|+| .....+.+++.++..
T Consensus 148 rv~lAraL-~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~ 188 (277)
T PRK13642 148 RVAVAGII-ALRPEIIILDESTSMLDPTGRQEIMRVIHEIKE 188 (277)
T ss_pred HHHHHHHH-HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence 99999999 999999999965 455555566666644
|
|
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.3e-19 Score=163.71 Aligned_cols=153 Identities=18% Similarity=0.304 Sum_probs=104.3
Q ss_pred CceeeccCcch--hhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccc
Q 020346 137 YEPLFCSVESK--LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (327)
Q Consensus 137 ~~~~~~s~~~~--~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s 213 (327)
++.+.++|++. .+++++++.+ +|++++|+|+||+|||||+++|+| +++|++|+|+++|.++...+
T Consensus 3 ~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G------------l~~p~~G~i~~~g~~~~~~~ 70 (234)
T cd03251 3 FKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPR------------FYDVDSGRILIDGHDVRDYT 70 (234)
T ss_pred EEEEEEEeCCCCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhc------------cccCCCCEEEECCEEhhhCC
Confidence 45667777654 6899999998 999999999999999999999999 88999999999998876543
Q ss_pred ccCCCcceeeEEEEEEEccCCC---eEEeCcccCCccc--ccc-------CHhHHhhhhH--------HHHHhcCccccc
Q 020346 214 TKSGRGKHTTRHVSLLPLSGGG---YLADTPGFNQPSL--LKV-------TKQSLAQTFP--------EIKEMLKANEPA 273 (327)
Q Consensus 214 ~~~~~g~~tt~~i~~v~q~~~~---~i~Dtpg~~~~~l--~~~-------~~~~l~~~~~--------~~~~~LSgGq~q 273 (327)
... .++.+++++|++.. ++.|+..+..... ..+ ...+....++ .....||+||+|
T Consensus 71 ~~~-----~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~q 145 (234)
T cd03251 71 LAS-----LRRQIGLVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQ 145 (234)
T ss_pred HHH-----HHhhEEEeCCCCeeccccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHH
Confidence 221 35678999987522 2222222211100 000 0011111110 012349999999
Q ss_pred cccccccccccCCceEEcccH------HHHHHHHHHHHHH
Q 020346 274 KCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEI 307 (327)
Q Consensus 274 ~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~ 307 (327)
|+.+++++ +.+|+++++|+| ...+.+.+++.++
T Consensus 146 rv~la~al-~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~ 184 (234)
T cd03251 146 RIAIARAL-LKDPPILILDEATSALDTESERLVQAALERL 184 (234)
T ss_pred HHHHHHHH-hcCCCEEEEeCccccCCHHHHHHHHHHHHHh
Confidence 99999999 899999999965 3455555666655
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=8.2e-20 Score=185.14 Aligned_cols=158 Identities=11% Similarity=0.113 Sum_probs=109.4
Q ss_pred cCCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccc
Q 020346 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (327)
Q Consensus 135 ~~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s 213 (327)
+.++.+.++|++..+++++++.+ +|++++|+||||||||||+|+|+| +++|++|+|.++|.++...+
T Consensus 12 l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G------------l~~p~~G~i~~~g~~~~~~~ 79 (510)
T PRK15439 12 LCARSISKQYSGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAG------------IVPPDSGTLEIGGNPCARLT 79 (510)
T ss_pred EEEEeEEEEeCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhC------------CCCCCceEEEECCEECCCCC
Confidence 34577888888778999999998 999999999999999999999999 89999999999998876543
Q ss_pred ccCCCcceeeEEEEEEEccCCC----eEEeCcccCCccccc--------cCHhHHhhhhHHHHHhcCccccccccccccc
Q 020346 214 TKSGRGKHTTRHVSLLPLSGGG----YLADTPGFNQPSLLK--------VTKQSLAQTFPEIKEMLKANEPAKCSFNNCL 281 (327)
Q Consensus 214 ~~~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~~l~~--------~~~~~l~~~~~~~~~~LSgGq~q~~~~~~~~ 281 (327)
.... ....++|++|++.. ++.|+..+....... ++...+..........|||||+||+.|++++
T Consensus 80 ~~~~----~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL 155 (510)
T PRK15439 80 PAKA----HQLGIYLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGL 155 (510)
T ss_pred HHHH----HhCCEEEEeccCccCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHH
Confidence 2210 12468999997532 222322221100000 0000010111111234999999999999999
Q ss_pred cccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 282 HLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 282 h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
+.+|.++|+|+| ...+.+.++++++..
T Consensus 156 -~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~ 188 (510)
T PRK15439 156 -MRDSRILILDEPTASLTPAETERLFSRIRELLA 188 (510)
T ss_pred -HcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH
Confidence 999999999955 456666677777644
|
|
| >cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=99.76 E-value=4e-19 Score=160.68 Aligned_cols=155 Identities=17% Similarity=0.137 Sum_probs=105.9
Q ss_pred cCCceeeccCcc--hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecc
Q 020346 135 WGYEPLFCSVES--KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (327)
Q Consensus 135 ~~~~~~~~s~~~--~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~ 211 (327)
+.++.+.++|.. +.+++++++.+ +|++++|+|+||+|||||+++|+| +++|++|+|+++|.++..
T Consensus 3 l~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G------------~~~~~~G~i~~~g~~~~~ 70 (221)
T cd03244 3 IEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFR------------LVELSSGSILIDGVDISK 70 (221)
T ss_pred EEEEEEEEecCCCCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHc------------CCCCCCCEEEECCEEhHh
Confidence 345677788753 46999999998 999999999999999999999999 889999999999998765
Q ss_pred ccccCCCcceeeEEEEEEEccCCC---eEEeCcccCCcc-cccc----CHhHHhhhh-----------HHHHHhcCcccc
Q 020346 212 VSTKSGRGKHTTRHVSLLPLSGGG---YLADTPGFNQPS-LLKV----TKQSLAQTF-----------PEIKEMLKANEP 272 (327)
Q Consensus 212 ~s~~~~~g~~tt~~i~~v~q~~~~---~i~Dtpg~~~~~-l~~~----~~~~l~~~~-----------~~~~~~LSgGq~ 272 (327)
.+... ..+.++|++|.+.. ++.|+..+.... .+.+ +...+.... ......||+||+
T Consensus 71 ~~~~~-----~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~ 145 (221)
T cd03244 71 IGLHD-----LRSRISIIPQDPVLFSGTIRSNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQR 145 (221)
T ss_pred CCHHH-----HhhhEEEECCCCccccchHHHHhCcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHH
Confidence 43222 45679999997532 122222111100 0000 000011110 011235999999
Q ss_pred ccccccccccccCCceEEcccH------HHHHHHHHHHHHH
Q 020346 273 AKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEI 307 (327)
Q Consensus 273 q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~ 307 (327)
||+.+++++ +.+|.++++|+| ...+.+.++++++
T Consensus 146 qr~~laral-~~~p~llllDEP~~~LD~~~~~~l~~~l~~~ 185 (221)
T cd03244 146 QLLCLARAL-LRKSKILVLDEATASVDPETDALIQKTIREA 185 (221)
T ss_pred HHHHHHHHH-hcCCCEEEEeCccccCCHHHHHHHHHHHHHh
Confidence 999999999 999999999965 3445555555554
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.6e-19 Score=182.73 Aligned_cols=155 Identities=21% Similarity=0.291 Sum_probs=111.0
Q ss_pred cCCceeeccCcc--hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecc
Q 020346 135 WGYEPLFCSVES--KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (327)
Q Consensus 135 ~~~~~~~~s~~~--~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~ 211 (327)
+.++.+.++|.+ +.+++++++.+ +|+.++|+|+||+|||||+++|+| +++|++|+|.++|.++..
T Consensus 317 i~~~~v~~~y~~~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g------------~~~~~~G~i~~~g~~i~~ 384 (544)
T TIGR01842 317 LSVENVTIVPPGGKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVG------------IWPPTSGSVRLDGADLKQ 384 (544)
T ss_pred EEEEEEEEEcCCCCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhC------------CCCCCCceEEECCEehhh
Confidence 567788899953 57899999998 999999999999999999999999 999999999999999887
Q ss_pred ccccCCCcceeeEEEEEEEccC---CCeEEeCcccCCccc--ccc-------CHhHHhhhhHH--------HHHhcCccc
Q 020346 212 VSTKSGRGKHTTRHVSLLPLSG---GGYLADTPGFNQPSL--LKV-------TKQSLAQTFPE--------IKEMLKANE 271 (327)
Q Consensus 212 ~s~~~~~g~~tt~~i~~v~q~~---~~~i~Dtpg~~~~~l--~~~-------~~~~l~~~~~~--------~~~~LSgGq 271 (327)
.+... .+++++++||++ ..++.|+..+..+.. +.+ ...+....+|+ -...|||||
T Consensus 385 ~~~~~-----~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq 459 (544)
T TIGR01842 385 WDRET-----FGKHIGYLPQDVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQ 459 (544)
T ss_pred CCHHH-----HhhheEEecCCcccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHH
Confidence 76543 677899999975 223444433221111 000 00111111111 012499999
Q ss_pred cccccccccccccCCceEEcccH------HHHHHHHHHHHHH
Q 020346 272 PAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEI 307 (327)
Q Consensus 272 ~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~ 307 (327)
+||+++++++ +.+|+++|+||| +..+...+.+.++
T Consensus 460 ~qrl~lARal-l~~~~ililDEpts~LD~~~~~~i~~~l~~~ 500 (544)
T TIGR01842 460 RQRIALARAL-YGDPKLVVLDEPNSNLDEEGEQALANAIKAL 500 (544)
T ss_pred HHHHHHHHHH-hcCCCEEEEeCCccccCHHHHHHHHHHHHHH
Confidence 9999999999 999999999965 3444444445444
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=3e-19 Score=168.80 Aligned_cols=157 Identities=13% Similarity=0.156 Sum_probs=106.5
Q ss_pred CCceeeccCcc-----hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceee
Q 020346 136 GYEPLFCSVES-----KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRV 209 (327)
Q Consensus 136 ~~~~~~~s~~~-----~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v 209 (327)
.++.+.++|.. ..+++++++.+ +|++++|+|+||+|||||+++|+| +.+|++|+|+++|+++
T Consensus 4 ~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G------------l~~p~~G~i~~~g~~i 71 (290)
T PRK13634 4 TFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNG------------LLQPTSGTVTIGERVI 71 (290)
T ss_pred EEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhc------------CCCCCCcEEEECCEEC
Confidence 35677777853 46899999998 999999999999999999999999 8899999999999987
Q ss_pred ccccccCCCcceeeEEEEEEEccCCC-----eEEeCcccCCc--c-------------ccccCHh-HHhhhhHHHHHhcC
Q 020346 210 GEVSTKSGRGKHTTRHVSLLPLSGGG-----YLADTPGFNQP--S-------------LLKVTKQ-SLAQTFPEIKEMLK 268 (327)
Q Consensus 210 ~~~s~~~~~g~~tt~~i~~v~q~~~~-----~i~Dtpg~~~~--~-------------l~~~~~~-~l~~~~~~~~~~LS 268 (327)
...... ......++.++|++|++.. ++.++..+... . ++.+.+. .+.+.. ...||
T Consensus 72 ~~~~~~-~~~~~~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~---~~~LS 147 (290)
T PRK13634 72 TAGKKN-KKLKPLRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARS---PFELS 147 (290)
T ss_pred cccccc-chHHHHHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCC---cccCC
Confidence 532100 0001145679999997522 22222211100 0 0001110 111111 23499
Q ss_pred ccccccccccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 269 ANEPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 269 gGq~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
+||+||+.+++++ +.+|.++|+|+| .-...+.+++.++..
T Consensus 148 gGq~qrv~lAraL-~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~ 193 (290)
T PRK13634 148 GGQMRRVAIAGVL-AMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHK 193 (290)
T ss_pred HHHHHHHHHHHHH-HcCCCEEEEECCcccCCHHHHHHHHHHHHHHHH
Confidence 9999999999999 999999999955 455556666666644
|
|
| >PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.9e-19 Score=183.89 Aligned_cols=143 Identities=15% Similarity=0.214 Sum_probs=103.9
Q ss_pred hcCCceeeccCcc-hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecc
Q 020346 134 TWGYEPLFCSVES-KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (327)
Q Consensus 134 ~~~~~~~~~s~~~-~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~ 211 (327)
.+.++.+.++|.+ ..+++++++.+ +|++++|+|+||+|||||+++|+| +++|++|+|.++|+++.+
T Consensus 322 ~i~~~~v~f~y~~~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g------------~~~~~~G~i~~~g~~~~~ 389 (547)
T PRK10522 322 TLELRNVTFAYQDNGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTG------------LYQPQSGEILLDGKPVTA 389 (547)
T ss_pred eEEEEEEEEEeCCCCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC------------CCCCCCeEEEECCEECCC
Confidence 4667888999964 46899999998 999999999999999999999999 999999999999999887
Q ss_pred ccccCCCcceeeEEEEEEEccC---CCeEEeCc-ccCCccccc-cCHhHHhhhh--HHH---HHhcCccccccccccccc
Q 020346 212 VSTKSGRGKHTTRHVSLLPLSG---GGYLADTP-GFNQPSLLK-VTKQSLAQTF--PEI---KEMLKANEPAKCSFNNCL 281 (327)
Q Consensus 212 ~s~~~~~g~~tt~~i~~v~q~~---~~~i~Dtp-g~~~~~l~~-~~~~~l~~~~--~~~---~~~LSgGq~q~~~~~~~~ 281 (327)
.+... .++++++++|++ ++++.++. ......++. ++...+.... ++- ...|||||+||+++++++
T Consensus 390 ~~~~~-----~~~~i~~v~q~~~lf~~ti~~n~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal 464 (547)
T PRK10522 390 EQPED-----YRKLFSAVFTDFHLFDQLLGPEGKPANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLAL 464 (547)
T ss_pred CCHHH-----HhhheEEEecChhHHHHhhccccCchHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHH
Confidence 65443 677899999975 23343431 000000000 0000000000 000 125999999999999999
Q ss_pred cccCCceEEcccH
Q 020346 282 HLGEPGCVVKGDW 294 (327)
Q Consensus 282 h~~ep~~~v~~~~ 294 (327)
+.+|+++++||+
T Consensus 465 -~~~~~ililDE~ 476 (547)
T PRK10522 465 -AEERDILLLDEW 476 (547)
T ss_pred -hcCCCEEEEECC
Confidence 999999999965
|
|
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.6e-19 Score=167.88 Aligned_cols=161 Identities=14% Similarity=0.117 Sum_probs=106.3
Q ss_pred CCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCccccccccccc---ccceeecceeecc
Q 020346 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPI---LGSKWFEDQRVGE 211 (327)
Q Consensus 136 ~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~---~G~i~~~g~~v~~ 211 (327)
.++.+.++|.+..+++++++.+ +|++++|+|+||+|||||+++|+| +++|+ +|+|+++|.++..
T Consensus 6 ~~~nl~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G------------~~~p~~~~~G~i~~~g~~~~~ 73 (262)
T PRK09984 6 RVEKLAKTFNQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSG------------LITGDKSAGSHIELLGRTVQR 73 (262)
T ss_pred EEeeEEEEeCCeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhc------------cCCCCCCCceEEEECCEeccc
Confidence 3566777887778999999998 999999999999999999999999 77775 5999999988754
Q ss_pred ccccCCCcceeeEEEEEEEccCCC----eEEeCcccCCcc---c-----cccC---HhHHhh---------hhHHHHHhc
Q 020346 212 VSTKSGRGKHTTRHVSLLPLSGGG----YLADTPGFNQPS---L-----LKVT---KQSLAQ---------TFPEIKEML 267 (327)
Q Consensus 212 ~s~~~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~~---l-----~~~~---~~~l~~---------~~~~~~~~L 267 (327)
.......-...++.++|+||.... ++.++..+.... + .... .....+ ........|
T Consensus 74 ~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~L 153 (262)
T PRK09984 74 EGRLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTL 153 (262)
T ss_pred ccccchhHHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCcccc
Confidence 321000001134568999997532 222222111000 0 0000 000010 011112349
Q ss_pred CccccccccccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 268 KANEPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 268 SgGq~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
|+||+||+.+++++ +.+|.++|+|+| ...+.+.++++++..
T Consensus 154 S~G~~qrv~laral-~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~ 200 (262)
T PRK09984 154 SGGQQQRVAIARAL-MQQAKVILADEPIASLDPESARIVMDTLRDINQ 200 (262)
T ss_pred CHHHHHHHHHHHHH-hcCCCEEEecCccccCCHHHHHHHHHHHHHHHH
Confidence 99999999999999 899999999965 455566667776654
|
|
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.4e-19 Score=164.08 Aligned_cols=158 Identities=15% Similarity=0.184 Sum_probs=106.0
Q ss_pred cCCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccc-----cccceeeccee
Q 020346 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEP-----ILGSKWFEDQR 208 (327)
Q Consensus 135 ~~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p-----~~G~i~~~g~~ 208 (327)
+.++.+.++|++..+++++++.+ +|++++|+|+||||||||+++|+| +++| ++|+|+++|.+
T Consensus 8 l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G------------l~~~~~~~~~~G~i~~~g~~ 75 (254)
T PRK14273 8 IETENLNLFYTDFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNR------------MNDLVEGIKIEGNVIYEGKN 75 (254)
T ss_pred EEEeeeEEEeCCceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhc------------cccCCcCCCCceEEEECCEe
Confidence 34567788887777999999998 999999999999999999999999 7776 59999999988
Q ss_pred eccccccCCCcceeeEEEEEEEccCCC---eEEeCcccCCccccccCH----hHHhhh-------------hHHHHHhcC
Q 020346 209 VGEVSTKSGRGKHTTRHVSLLPLSGGG---YLADTPGFNQPSLLKVTK----QSLAQT-------------FPEIKEMLK 268 (327)
Q Consensus 209 v~~~s~~~~~g~~tt~~i~~v~q~~~~---~i~Dtpg~~~~~l~~~~~----~~l~~~-------------~~~~~~~LS 268 (327)
+...+... ...++.++|++|++.. ++.|+..+.......... ..+... .......||
T Consensus 76 i~~~~~~~---~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS 152 (254)
T PRK14273 76 IYSNNFDI---LELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLS 152 (254)
T ss_pred cccccccH---HHHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCC
Confidence 75321100 1145679999997532 222222111000000000 001110 011123499
Q ss_pred ccccccccccccccccCCceEEcccH------HHHHHHHHHHHHHH
Q 020346 269 ANEPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIR 308 (327)
Q Consensus 269 gGq~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~ 308 (327)
|||+||+.+++++ +.+|.++|+|+| ...+...+++.++.
T Consensus 153 gG~~qrv~laral-~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~ 197 (254)
T PRK14273 153 GGQQQRLCIARTL-AIEPNVILMDEPTSALDPISTGKIEELIINLK 197 (254)
T ss_pred HHHHHHHHHHHHH-HcCCCEEEEeCCCcccCHHHHHHHHHHHHHHh
Confidence 9999999999999 899999999965 45555666666663
|
|
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.8e-19 Score=163.37 Aligned_cols=152 Identities=16% Similarity=0.216 Sum_probs=106.0
Q ss_pred CceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccccc
Q 020346 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (327)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~ 215 (327)
++.+.++|....+++++++.+ +|++++|+|+||+|||||+++|+| +++|++|+|.++|.++...+.
T Consensus 3 ~~~l~~~~~~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g------------~~~~~~G~i~~~g~~~~~~~~- 69 (232)
T cd03300 3 LENVSKFYGGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAG------------FETPTSGEILLDGKDITNLPP- 69 (232)
T ss_pred EEeEEEEeCCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhc------------CCCCCceEEEECCEEcCcCCh-
Confidence 466777887778999999998 999999999999999999999999 899999999999998765432
Q ss_pred CCCcceeeEEEEEEEccCCC----eEEeCcccCCccccccCH-------hH------HhhhhHHHHHhcCcccccccccc
Q 020346 216 SGRGKHTTRHVSLLPLSGGG----YLADTPGFNQPSLLKVTK-------QS------LAQTFPEIKEMLKANEPAKCSFN 278 (327)
Q Consensus 216 ~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~~l~~~~~-------~~------l~~~~~~~~~~LSgGq~q~~~~~ 278 (327)
.++.+++++|++.. .+.|+..+.. ....... .. +..........||+||+||+.++
T Consensus 70 ------~~~~i~~~~q~~~~~~~~t~~~nl~~~~-~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~la 142 (232)
T cd03300 70 ------HKRPVNTVFQNYALFPHLTVFENIAFGL-RLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIA 142 (232)
T ss_pred ------hhcceEEEecccccCCCCcHHHHHHHHH-HhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHH
Confidence 24568999987422 1222211100 0000000 00 00001111234999999999999
Q ss_pred ccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 279 NCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 279 ~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
+++ +..|.++++|+| ...+.+.++++++..
T Consensus 143 ral-~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~ 178 (232)
T cd03300 143 RAL-VNEPKVLLLDEPLGALDLKLRKDMQLELKRLQK 178 (232)
T ss_pred HHH-hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH
Confidence 999 999999999965 355556666666654
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.9e-19 Score=179.24 Aligned_cols=155 Identities=14% Similarity=0.153 Sum_probs=106.4
Q ss_pred ceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccC
Q 020346 138 EPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKS 216 (327)
Q Consensus 138 ~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~ 216 (327)
+.+.++|++..+++++++.+ +|++++|+|+||||||||+++|+| +++|++|+|.++|.++...+...
T Consensus 2 ~nl~~~~~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~G------------l~~p~~G~i~~~g~~~~~~~~~~ 69 (491)
T PRK10982 2 SNISKSFPGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFG------------IYQKDSGSILFQGKEIDFKSSKE 69 (491)
T ss_pred CceEEEeCCEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcC------------CCCCCceEEEECCEECCCCCHHH
Confidence 45667777777999999998 999999999999999999999999 88999999999999875432211
Q ss_pred CCcceeeEEEEEEEccCCC----eEEeCcccCCccccc--cCHh----HHhh---------hhHHHHHhcCccccccccc
Q 020346 217 GRGKHTTRHVSLLPLSGGG----YLADTPGFNQPSLLK--VTKQ----SLAQ---------TFPEIKEMLKANEPAKCSF 277 (327)
Q Consensus 217 ~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~~l~~--~~~~----~l~~---------~~~~~~~~LSgGq~q~~~~ 277 (327)
. ..+.++++||.+.. ++.|+..+....... .... .... ........|||||+||+.+
T Consensus 70 ~----~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~l 145 (491)
T PRK10982 70 A----LENGISMVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEI 145 (491)
T ss_pred H----HhCCEEEEecccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHH
Confidence 0 23568999997532 233332221110000 0000 0111 1111134499999999999
Q ss_pred cccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 278 NNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 278 ~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
++++ +.+|.++|+|+| ...+.+.+++.++..
T Consensus 146 A~al-~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~ 182 (491)
T PRK10982 146 AKAF-SYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKE 182 (491)
T ss_pred HHHH-HhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Confidence 9999 899999999965 355555666666643
|
|
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.4e-19 Score=163.88 Aligned_cols=155 Identities=15% Similarity=0.166 Sum_probs=105.2
Q ss_pred CCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccc-----cccceeecceee
Q 020346 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEP-----ILGSKWFEDQRV 209 (327)
Q Consensus 136 ~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p-----~~G~i~~~g~~v 209 (327)
.++.+.++|++..+++++++.+ +|++++|+|+||+|||||+++|+| +++| ++|+|+++|.++
T Consensus 6 ~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G------------~~~~~~~~~~~G~i~~~g~~i 73 (253)
T PRK14267 6 ETVNLRVYYGSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNR------------LLELNEEARVEGEVRLFGRNI 73 (253)
T ss_pred EEEeEEEEeCCeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhc------------cCCcccCCCCceEEEECCEEc
Confidence 3567788887778999999998 999999999999999999999999 7776 599999999987
Q ss_pred cc--ccccCCCcceeeEEEEEEEccCCC----eEEeCcccCCc--cc----ccc--CHhHHhhh----------hHHHHH
Q 020346 210 GE--VSTKSGRGKHTTRHVSLLPLSGGG----YLADTPGFNQP--SL----LKV--TKQSLAQT----------FPEIKE 265 (327)
Q Consensus 210 ~~--~s~~~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~--~l----~~~--~~~~l~~~----------~~~~~~ 265 (327)
.. .... ..+.++++++|.+.. ++.++..+... .. ... ....+... ......
T Consensus 74 ~~~~~~~~-----~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~ 148 (253)
T PRK14267 74 YSPDVDPI-----EVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPS 148 (253)
T ss_pred cccccChH-----HHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChh
Confidence 52 2111 135579999997532 22222221100 00 000 00011111 111123
Q ss_pred hcCccccccccccccccccCCceEEcccH------HHHHHHHHHHHHHH
Q 020346 266 MLKANEPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIR 308 (327)
Q Consensus 266 ~LSgGq~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~ 308 (327)
.|||||+||+.+++++ +.+|.++|+|+| ...+...++++++.
T Consensus 149 ~LS~G~~qrv~laral-~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~ 196 (253)
T PRK14267 149 NLSGGQRQRLVIARAL-AMKPKILLMDEPTANIDPVGTAKIEELLFELK 196 (253)
T ss_pred hCCHHHHHHHHHHHHH-hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh
Confidence 4999999999999999 899999999965 35555556666653
|
|
| >PRK09580 sufC cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=99.75 E-value=7.5e-19 Score=161.63 Aligned_cols=156 Identities=16% Similarity=0.164 Sum_probs=104.0
Q ss_pred CceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCccccccc--ccccccceeecceeecccc
Q 020346 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNW--FEPILGSKWFEDQRVGEVS 213 (327)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~--~~p~~G~i~~~g~~v~~~s 213 (327)
++.+.++|.+..+++++++.+ +|++++|+|+||+|||||+++|+| + ++|++|+|.++|.++...+
T Consensus 4 ~~nl~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G------------l~~~~~~~G~i~~~g~~~~~~~ 71 (248)
T PRK09580 4 IKDLHVSVEDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAG------------REDYEVTGGTVEFKGKDLLELS 71 (248)
T ss_pred EEEEEEEeCCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcC------------CccCCCCceEEEECCCccccCC
Confidence 466777887777999999998 999999999999999999999999 6 4799999999998876543
Q ss_pred ccCCCcceeeEEEEEEEccCCCeEEeC-------c--ccCCc-cccccCHhHHhhhhH----------HH----H-HhcC
Q 020346 214 TKSGRGKHTTRHVSLLPLSGGGYLADT-------P--GFNQP-SLLKVTKQSLAQTFP----------EI----K-EMLK 268 (327)
Q Consensus 214 ~~~~~g~~tt~~i~~v~q~~~~~i~Dt-------p--g~~~~-~l~~~~~~~l~~~~~----------~~----~-~~LS 268 (327)
.... ....+++++|++..+-..+ . .+... ....+...++..... .. . ..||
T Consensus 72 ~~~~----~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS 147 (248)
T PRK09580 72 PEDR----AGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFS 147 (248)
T ss_pred HHHH----hhcceEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCC
Confidence 2211 2356888888742211000 0 00000 000011101111000 00 0 1499
Q ss_pred ccccccccccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 269 ANEPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 269 gGq~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
|||+||+.+++++ +.+|.++|+|+| .-.+.+.++++++..
T Consensus 148 ~G~~qrv~laral-~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~ 193 (248)
T PRK09580 148 GGEKKRNDILQMA-VLEPELCILDESDSGLDIDALKIVADGVNSLRD 193 (248)
T ss_pred HHHHHHHHHHHHH-HcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh
Confidence 9999999999999 999999999965 455556666666654
|
|
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.8e-19 Score=164.32 Aligned_cols=157 Identities=15% Similarity=0.214 Sum_probs=104.6
Q ss_pred CCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCccccccccc-----ccccceeecceee
Q 020346 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFE-----PILGSKWFEDQRV 209 (327)
Q Consensus 136 ~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~-----p~~G~i~~~g~~v 209 (327)
.++.+.++|++..+++++++.+ +|++++|+|+||||||||+++|+| ++. |++|+|+++|+++
T Consensus 8 ~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G------------l~~~~~~~~~~G~i~~~g~~i 75 (253)
T PRK14242 8 EARGLSFFYGDFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNR------------MNDLIPGARVEGEILLDGENI 75 (253)
T ss_pred EEeeeEEEECCeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHh------------hcccCCCCCCceEEEECCEEc
Confidence 4566777787777999999998 999999999999999999999999 543 6899999999987
Q ss_pred ccccccCCCcceeeEEEEEEEccCCCe---EEeCcccCCc--cc-c-ccCHhHHh---hh----------hHHHHHhcCc
Q 020346 210 GEVSTKSGRGKHTTRHVSLLPLSGGGY---LADTPGFNQP--SL-L-KVTKQSLA---QT----------FPEIKEMLKA 269 (327)
Q Consensus 210 ~~~s~~~~~g~~tt~~i~~v~q~~~~~---i~Dtpg~~~~--~l-~-~~~~~~l~---~~----------~~~~~~~LSg 269 (327)
...+... ...++.++|++|.+..+ +.|+..+... .. . ......+. .. .......|||
T Consensus 76 ~~~~~~~---~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSg 152 (253)
T PRK14242 76 YDPHVDV---VELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSG 152 (253)
T ss_pred cccccCH---HHHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCH
Confidence 5421110 01356799999975322 2222211100 00 0 00000111 00 0011234999
Q ss_pred cccccccccccccccCCceEEcccH------HHHHHHHHHHHHHH
Q 020346 270 NEPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIR 308 (327)
Q Consensus 270 Gq~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~ 308 (327)
||+||+.+++++ +.+|.++++|+| ...+.+.+++.++.
T Consensus 153 Gq~qrv~laral-~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~ 196 (253)
T PRK14242 153 GQQQRLCIARAL-AVEPEVLLMDEPASALDPIATQKIEELIHELK 196 (253)
T ss_pred HHHHHHHHHHHH-hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh
Confidence 999999999999 899999999965 45556666666663
|
|
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.7e-19 Score=171.05 Aligned_cols=145 Identities=20% Similarity=0.297 Sum_probs=100.0
Q ss_pred hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcceeeEE
Q 020346 147 KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRH 225 (327)
Q Consensus 147 ~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~tt~~ 225 (327)
..+++++++.+ +|++++|+|+||||||||+++|+| +++|++|+|.++|.++...+.... +..+++
T Consensus 28 ~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~g------------l~~p~~G~i~~~g~~l~~~~~~~~--~~~r~~ 93 (327)
T PRK11308 28 VKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTM------------IETPTGGELYYQGQDLLKADPEAQ--KLLRQK 93 (327)
T ss_pred eeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHc------------CCCCCCcEEEECCEEcCcCCHHHH--HHHhCC
Confidence 36899999998 999999999999999999999999 889999999999998876543210 113457
Q ss_pred EEEEEccCCCeEE------eCcc--------cCCcc--------ccccCHh-HHhhhhHHHHHhcCcccccccccccccc
Q 020346 226 VSLLPLSGGGYLA------DTPG--------FNQPS--------LLKVTKQ-SLAQTFPEIKEMLKANEPAKCSFNNCLH 282 (327)
Q Consensus 226 i~~v~q~~~~~i~------Dtpg--------~~~~~--------l~~~~~~-~l~~~~~~~~~~LSgGq~q~~~~~~~~h 282 (327)
++|++|++...+. +... ..... ++.+.+. ...+.++ ..|||||+||+.+++++
T Consensus 94 i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p---~~LSgGq~QRv~iArAL- 169 (327)
T PRK11308 94 IQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYP---HMFSGGQRQRIAIARAL- 169 (327)
T ss_pred EEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCC---ccCCHHHHHHHHHHHHH-
Confidence 9999998521111 1110 00000 0001110 1111222 23999999999999999
Q ss_pred ccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 283 LGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 283 ~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
+.+|+++|.|+| .-.....+++.++..
T Consensus 170 ~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~ 202 (327)
T PRK11308 170 MLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQ 202 (327)
T ss_pred HcCCCEEEEECCCccCCHHHHHHHHHHHHHHHH
Confidence 999999999965 355556666666654
|
|
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.4e-19 Score=187.94 Aligned_cols=142 Identities=18% Similarity=0.268 Sum_probs=107.9
Q ss_pred cCCceeeccCcc--hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecc
Q 020346 135 WGYEPLFCSVES--KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (327)
Q Consensus 135 ~~~~~~~~s~~~--~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~ 211 (327)
+.++.++++|.. +.+++++++.+ +|+.++|+|+||+|||||+|+|+| +++|++|+|.+||.++.+
T Consensus 456 i~~~~vsf~y~~~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g------------~~~p~~G~I~idg~~i~~ 523 (694)
T TIGR01846 456 ITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQR------------LYTPQHGQVLVDGVDLAI 523 (694)
T ss_pred EEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhc------------CCCCCCceEEECCEehhh
Confidence 567888999953 46899999998 899999999999999999999999 999999999999999988
Q ss_pred ccccCCCcceeeEEEEEEEccC---CCeEEeCcccCCccccc--c-------CHhHHhhhhH--------HHHHhcCccc
Q 020346 212 VSTKSGRGKHTTRHVSLLPLSG---GGYLADTPGFNQPSLLK--V-------TKQSLAQTFP--------EIKEMLKANE 271 (327)
Q Consensus 212 ~s~~~~~g~~tt~~i~~v~q~~---~~~i~Dtpg~~~~~l~~--~-------~~~~l~~~~~--------~~~~~LSgGq 271 (327)
++... .++.++++||++ ++++.|+..+..+.... + ...+.-..+| +-...|||||
T Consensus 524 ~~~~~-----~r~~i~~v~q~~~lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq 598 (694)
T TIGR01846 524 ADPAW-----LRRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQ 598 (694)
T ss_pred CCHHH-----HHHhCeEEccCCeehhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHH
Confidence 87654 678899999985 34555555443322110 0 0011111111 0012499999
Q ss_pred cccccccccccccCCceEEcccH
Q 020346 272 PAKCSFNNCLHLGEPGCVVKGDW 294 (327)
Q Consensus 272 ~q~~~~~~~~h~~ep~~~v~~~~ 294 (327)
+||+++++++ +.+|.++++||+
T Consensus 599 ~qri~lARal-l~~~~ililDEp 620 (694)
T TIGR01846 599 RQRIAIARAL-VGNPRILIFDEA 620 (694)
T ss_pred HHHHHHHHHH-HhCCCEEEEECC
Confidence 9999999999 999999999965
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.9e-19 Score=158.10 Aligned_cols=139 Identities=15% Similarity=0.170 Sum_probs=100.8
Q ss_pred CCceeeccCcc----hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccc--cccccceeeccee
Q 020346 136 GYEPLFCSVES----KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWF--EPILGSKWFEDQR 208 (327)
Q Consensus 136 ~~~~~~~s~~~----~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~--~p~~G~i~~~g~~ 208 (327)
.++.+.++|.+ ..+++++++.+ +|++++|+|+||+|||||+++|+| ++ +|++|+|.++|.+
T Consensus 5 ~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G------------~~~~~~~~G~i~~~g~~ 72 (192)
T cd03232 5 TWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAG------------RKTAGVITGEILINGRP 72 (192)
T ss_pred EEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhC------------CCcCCCcceEEEECCEe
Confidence 35667777754 56899999998 999999999999999999999999 43 5899999999988
Q ss_pred eccccccCCCcceeeEEEEEEEccCCCeEEeCcccCCccccccCHhHHhhhhHHHHHhcCccccccccccccccccCCce
Q 020346 209 VGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGC 288 (327)
Q Consensus 209 v~~~s~~~~~g~~tt~~i~~v~q~~~~~i~Dtpg~~~~~l~~~~~~~l~~~~~~~~~~LSgGq~q~~~~~~~~h~~ep~~ 288 (327)
+. .. .++.+++++|.+..+ . .....+++..... ...|||||+||+.|++++ +.+|.+
T Consensus 73 ~~----~~-----~~~~i~~~~q~~~~~--~----~~tv~~~l~~~~~-------~~~LSgGe~qrv~la~al-~~~p~v 129 (192)
T cd03232 73 LD----KN-----FQRSTGYVEQQDVHS--P----NLTVREALRFSAL-------LRGLSVEQRKRLTIGVEL-AAKPSI 129 (192)
T ss_pred hH----HH-----hhhceEEecccCccc--c----CCcHHHHHHHHHH-------HhcCCHHHhHHHHHHHHH-hcCCcE
Confidence 75 11 445788999853110 0 0112222221110 115999999999999999 999999
Q ss_pred EEcccH------HHHHHHHHHHHHHHH
Q 020346 289 VVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 289 ~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
+++|+| ...+...++++++..
T Consensus 130 lllDEP~~~LD~~~~~~l~~~l~~~~~ 156 (192)
T cd03232 130 LFLDEPTSGLDSQAAYNIVRFLKKLAD 156 (192)
T ss_pred EEEeCCCcCCCHHHHHHHHHHHHHHHH
Confidence 999855 455556666666643
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.8e-19 Score=163.25 Aligned_cols=154 Identities=18% Similarity=0.299 Sum_probs=104.7
Q ss_pred CceeeccCc-chhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccc
Q 020346 137 YEPLFCSVE-SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (327)
Q Consensus 137 ~~~~~~s~~-~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~ 214 (327)
++.+.++|. +..+++++++.+ +|++++|+|+||+|||||+++|+| +++|++|+|+++|.++...+.
T Consensus 3 ~~~l~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G------------l~~~~~G~v~~~g~~~~~~~~ 70 (236)
T cd03253 3 FENVTFAYDPGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFR------------FYDVSSGSILIDGQDIREVTL 70 (236)
T ss_pred EEEEEEEeCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhc------------ccCCCCCEEEECCEEhhhCCH
Confidence 456677774 456899999998 999999999999999999999999 889999999999998765432
Q ss_pred cCCCcceeeEEEEEEEccCCC---eEEeCcccCCccc--cc-------cCHhHHhhhhHH--------HHHhcCcccccc
Q 020346 215 KSGRGKHTTRHVSLLPLSGGG---YLADTPGFNQPSL--LK-------VTKQSLAQTFPE--------IKEMLKANEPAK 274 (327)
Q Consensus 215 ~~~~g~~tt~~i~~v~q~~~~---~i~Dtpg~~~~~l--~~-------~~~~~l~~~~~~--------~~~~LSgGq~q~ 274 (327)
.. .++.++|++|.+.. ++.|+..+..... .. ....+....++. -...||+||+||
T Consensus 71 ~~-----~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~r 145 (236)
T cd03253 71 DS-----LRRAIGVVPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQR 145 (236)
T ss_pred HH-----HHhhEEEECCCChhhcchHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHH
Confidence 21 34568999987522 2222221111000 00 000111111110 012599999999
Q ss_pred ccccccccccCCceEEcccH------HHHHHHHHHHHHHH
Q 020346 275 CSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIR 308 (327)
Q Consensus 275 ~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~ 308 (327)
+.+++++ +.+|.++|+|+| ...+.+.+++.++.
T Consensus 146 l~la~aL-~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~ 184 (236)
T cd03253 146 VAIARAI-LKNPPILLLDEATSALDTHTEREIQAALRDVS 184 (236)
T ss_pred HHHHHHH-hcCCCEEEEeCCcccCCHHHHHHHHHHHHHhc
Confidence 9999999 999999999965 34455556665554
|
Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.9e-19 Score=165.81 Aligned_cols=154 Identities=15% Similarity=0.144 Sum_probs=105.6
Q ss_pred CceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccc---cccccceeecceeeccc
Q 020346 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWF---EPILGSKWFEDQRVGEV 212 (327)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~---~p~~G~i~~~g~~v~~~ 212 (327)
++.+.+.|++..+++++++.+ +|++++|+|+||+|||||+|+|+| ++ +|++|+|+++|.++...
T Consensus 5 ~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G------------l~~~~~~~~G~i~~~g~~i~~~ 72 (246)
T PRK14269 5 TTNLNLFYGKKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNR------------MNDKIAKIDGLVEIEGKDVKNQ 72 (246)
T ss_pred eeeeEEEECCEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhc------------ccCCCCCCceEEEECCEecccC
Confidence 456777787777999999998 999999999999999999999999 65 47999999999988654
Q ss_pred cccCCCcceeeEEEEEEEccCCC---eEEeCcccCCcc--c-c--ccC---HhHHhh---hhH-------HHHHhcCccc
Q 020346 213 STKSGRGKHTTRHVSLLPLSGGG---YLADTPGFNQPS--L-L--KVT---KQSLAQ---TFP-------EIKEMLKANE 271 (327)
Q Consensus 213 s~~~~~g~~tt~~i~~v~q~~~~---~i~Dtpg~~~~~--l-~--~~~---~~~l~~---~~~-------~~~~~LSgGq 271 (327)
+... .++.++|+||.+.. ++.|+..+.... . . ... ...+.+ ..+ .....||+||
T Consensus 73 ~~~~-----~~~~i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~ 147 (246)
T PRK14269 73 DVVA-----LRKNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQ 147 (246)
T ss_pred CHHH-----HhhhEEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHH
Confidence 3221 45679999997533 222332211000 0 0 000 001111 111 1123499999
Q ss_pred cccccccccccccCCceEEcccH------HHHHHHHHHHHHHH
Q 020346 272 PAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIR 308 (327)
Q Consensus 272 ~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~ 308 (327)
+||+++++++ +.+|.++++|+| .....+.+++.++.
T Consensus 148 ~qrv~laral-~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~ 189 (246)
T PRK14269 148 QQRLCIARAL-AIKPKLLLLDEPTSALDPISSGVIEELLKELS 189 (246)
T ss_pred HHHHHHHHHH-hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHh
Confidence 9999999999 999999999965 34555556666553
|
|
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.2e-19 Score=170.15 Aligned_cols=154 Identities=14% Similarity=0.193 Sum_probs=105.2
Q ss_pred CceeeccCc-chhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccc
Q 020346 137 YEPLFCSVE-SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (327)
Q Consensus 137 ~~~~~~s~~-~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~ 214 (327)
++.+.++|. ...+++++++.+ +|++++|+|+||+|||||+++|+| +++|++|+|.++|.++...+.
T Consensus 4 ~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~G------------l~~~~~G~i~~~g~~~~~~~~ 71 (275)
T PRK13639 4 TRDLKYSYPDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNG------------ILKPTSGEVLIKGEPIKYDKK 71 (275)
T ss_pred EEEEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhC------------CCCCCccEEEECCEECccccc
Confidence 566777885 456899999998 999999999999999999999999 899999999999998742111
Q ss_pred cCCCcceeeEEEEEEEccCCC-----eEEeCcccCCc--c-------------ccccCHhHHhhhhHHHHHhcCcccccc
Q 020346 215 KSGRGKHTTRHVSLLPLSGGG-----YLADTPGFNQP--S-------------LLKVTKQSLAQTFPEIKEMLKANEPAK 274 (327)
Q Consensus 215 ~~~~g~~tt~~i~~v~q~~~~-----~i~Dtpg~~~~--~-------------l~~~~~~~l~~~~~~~~~~LSgGq~q~ 274 (327)
. .+..++.++|+||++.. .+.|+..+... . ++.+......+.. ...|||||+||
T Consensus 72 ~---~~~~~~~i~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~---~~~LS~Gq~qr 145 (275)
T PRK13639 72 S---LLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKP---PHHLSGGQKKR 145 (275)
T ss_pred h---HHHHHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCC---hhhCCHHHHHH
Confidence 0 01145679999997521 11122111100 0 0000111111111 23499999999
Q ss_pred ccccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 275 CSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 275 ~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
+.|++|+ +.+|.++++|+| .-...+.+++.++..
T Consensus 146 v~laral-~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~ 185 (275)
T PRK13639 146 VAIAGIL-AMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNK 185 (275)
T ss_pred HHHHHHH-hcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHH
Confidence 9999999 999999999965 344555566666643
|
|
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.8e-19 Score=169.62 Aligned_cols=153 Identities=13% Similarity=0.191 Sum_probs=106.1
Q ss_pred CCceeeccCcc--hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccc---cceeecceee
Q 020346 136 GYEPLFCSVES--KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPIL---GSKWFEDQRV 209 (327)
Q Consensus 136 ~~~~~~~s~~~--~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~---G~i~~~g~~v 209 (327)
.++.+.++|.. ..+++++++.+ +|++++|+|+||||||||+++|+| +++|++ |+|.++|.++
T Consensus 7 ~i~~l~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G------------~~~p~~g~~G~i~i~g~~~ 74 (282)
T PRK13640 7 EFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLING------------LLLPDDNPNSKITVDGITL 74 (282)
T ss_pred EEEEEEEEcCCCCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhc------------ccCCCCCCCcEEEECCEEC
Confidence 35667777753 45899999998 999999999999999999999999 889998 8999999987
Q ss_pred ccccccCCCcceeeEEEEEEEccCC-----CeEEeCcccCCcc---------------ccccCHhHHhhhhHHHHHhcCc
Q 020346 210 GEVSTKSGRGKHTTRHVSLLPLSGG-----GYLADTPGFNQPS---------------LLKVTKQSLAQTFPEIKEMLKA 269 (327)
Q Consensus 210 ~~~s~~~~~g~~tt~~i~~v~q~~~-----~~i~Dtpg~~~~~---------------l~~~~~~~l~~~~~~~~~~LSg 269 (327)
...+... ...+++|++|++. .++.|+..+.... ++.+.+....+.. ...||+
T Consensus 75 ~~~~~~~-----~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~---~~~LS~ 146 (282)
T PRK13640 75 TAKTVWD-----IREKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSE---PANLSG 146 (282)
T ss_pred CcCCHHH-----HHhheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCC---cccCCH
Confidence 6433211 3567899998752 2233333221100 0001111111111 234999
Q ss_pred cccccccccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 270 NEPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 270 Gq~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
||+||+.+++++ +.+|.++|+|+| .-...+.+++.++..
T Consensus 147 G~~qrv~laral-~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~ 191 (282)
T PRK13640 147 GQKQRVAIAGIL-AVEPKIIILDESTSMLDPAGKEQILKLIRKLKK 191 (282)
T ss_pred HHHHHHHHHHHH-HcCCCEEEEECCcccCCHHHHHHHHHHHHHHHH
Confidence 999999999999 999999999965 344555566666543
|
|
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=6.4e-19 Score=162.78 Aligned_cols=158 Identities=15% Similarity=0.210 Sum_probs=106.3
Q ss_pred cCCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCccccccccc--c---cccceeeccee
Q 020346 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFE--P---ILGSKWFEDQR 208 (327)
Q Consensus 135 ~~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~--p---~~G~i~~~g~~ 208 (327)
+.++.+.++|++..+++++++.+ +|++++|+|+||||||||+++|+| +++ | ++|+|+++|.+
T Consensus 5 l~~~nl~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G------------l~~~~~~~~~~G~v~~~g~~ 72 (252)
T PRK14256 5 VKLEQLNVHFGKNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINR------------MHDLVPSARVTGKILLDDTD 72 (252)
T ss_pred EEEEEEEEEeCCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHh------------cccCCCCCCCceEEEECCEE
Confidence 34567788887778999999998 999999999999999999999999 654 3 69999999998
Q ss_pred eccccccCCCcceeeEEEEEEEccCCC----eEEeCcccCCccccccCH-------hHHhhhh----------HHHHHhc
Q 020346 209 VGEVSTKSGRGKHTTRHVSLLPLSGGG----YLADTPGFNQPSLLKVTK-------QSLAQTF----------PEIKEML 267 (327)
Q Consensus 209 v~~~s~~~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~~l~~~~~-------~~l~~~~----------~~~~~~L 267 (327)
+...+... ...++.++++||++.. ++.++..+.......... .++...+ ......|
T Consensus 73 i~~~~~~~---~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~L 149 (252)
T PRK14256 73 IYDRGVDP---VSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMEL 149 (252)
T ss_pred cccccCCh---HHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcC
Confidence 75432111 1146679999997532 222222111000000000 0111111 1112349
Q ss_pred CccccccccccccccccCCceEEcccH------HHHHHHHHHHHHHH
Q 020346 268 KANEPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIR 308 (327)
Q Consensus 268 SgGq~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~ 308 (327)
|+||+||+++++++ +.+|.++|+|+| ...+...++++++.
T Consensus 150 S~G~~qrl~laral-~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~ 195 (252)
T PRK14256 150 SGGQQQRLCIARTI-AVKPEVILMDEPASALDPISTLKIEELIEELK 195 (252)
T ss_pred CHHHHHHHHHHHHH-hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH
Confidence 99999999999999 899999999965 35555666666664
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=4.3e-19 Score=179.67 Aligned_cols=157 Identities=9% Similarity=0.108 Sum_probs=107.6
Q ss_pred CCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccc--cccceeecceeeccc
Q 020346 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEP--ILGSKWFEDQRVGEV 212 (327)
Q Consensus 136 ~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p--~~G~i~~~g~~v~~~ 212 (327)
.++.+.++|++..+++++++.+ +|++++|+||||||||||+|+|+| +++| ++|+|+++|.++...
T Consensus 7 ~~~nl~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G------------l~~~~~~~G~i~~~g~~~~~~ 74 (506)
T PRK13549 7 EMKNITKTFGGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSG------------VYPHGTYEGEIIFEGEELQAS 74 (506)
T ss_pred EEeeeEEEeCCeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhC------------CCCCCCCCeEEEECCEECCCC
Confidence 4567788888778999999998 999999999999999999999999 7776 899999999987543
Q ss_pred cccCCCcceeeEEEEEEEccCCC----eEEeCcccCCccc--cccCH----hHHhhh---------hHHHHHhcCccccc
Q 020346 213 STKSGRGKHTTRHVSLLPLSGGG----YLADTPGFNQPSL--LKVTK----QSLAQT---------FPEIKEMLKANEPA 273 (327)
Q Consensus 213 s~~~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~~l--~~~~~----~~l~~~---------~~~~~~~LSgGq~q 273 (327)
+.... .++.++|+||++.. ++.|+..+..... ..... ..+... .......|||||+|
T Consensus 75 ~~~~~----~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkq 150 (506)
T PRK13549 75 NIRDT----ERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQ 150 (506)
T ss_pred CHHHH----HHCCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHH
Confidence 32110 23568999997522 2223322211000 00000 011111 11112359999999
Q ss_pred cccccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 274 KCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 274 ~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
|++|++++ +.+|.++|+|+| .....+.+++.++..
T Consensus 151 rv~la~al-~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~ 191 (506)
T PRK13549 151 LVEIAKAL-NKQARLLILDEPTASLTESETAVLLDIIRDLKA 191 (506)
T ss_pred HHHHHHHH-hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Confidence 99999999 999999999955 455556667766643
|
|
| >cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.2e-18 Score=153.67 Aligned_cols=109 Identities=16% Similarity=0.147 Sum_probs=88.5
Q ss_pred CceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccccc
Q 020346 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (327)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~ 215 (327)
|+.+.++|++..+++++ +.+ +|++++|+|+||||||||+|+|+| +++|++|+|.++|..
T Consensus 3 ~~~l~~~~~~~~~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~G------------l~~p~~G~i~~~g~~------- 62 (177)
T cd03222 3 YPDCVKRYGVFFLLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAG------------QLIPNGDNDEWDGIT------- 62 (177)
T ss_pred CCCeEEEECCEEEEccC-cEECCCCEEEEECCCCChHHHHHHHHHc------------CCCCCCcEEEECCEE-------
Confidence 57788888888888874 666 899999999999999999999999 899999999998742
Q ss_pred CCCcceeeEEEEEEEccCCCeEEeCcccCCccccccCHhHHhhhhHHHHHhcCccccccccccccccccCCceEEcccHH
Q 020346 216 SGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE 295 (327)
Q Consensus 216 ~~~g~~tt~~i~~v~q~~~~~i~Dtpg~~~~~l~~~~~~~l~~~~~~~~~~LSgGq~q~~~~~~~~h~~ep~~~v~~~~~ 295 (327)
+++++|... ||+||+||+.+++++ +.+|.++++|+|.
T Consensus 63 ----------i~~~~q~~~--------------------------------LSgGq~qrv~laral-~~~p~lllLDEPt 99 (177)
T cd03222 63 ----------PVYKPQYID--------------------------------LSGGELQRVAIAAAL-LRNATFYLFDEPS 99 (177)
T ss_pred ----------EEEEcccCC--------------------------------CCHHHHHHHHHHHHH-hcCCCEEEEECCc
Confidence 456666321 999999999999999 9999999999653
Q ss_pred ------HHHHHHHHHHHHH
Q 020346 296 ------RYQYYFQLLDEIR 308 (327)
Q Consensus 296 ------r~~~~~~ll~e~~ 308 (327)
-.+....++.++.
T Consensus 100 s~LD~~~~~~l~~~l~~~~ 118 (177)
T cd03222 100 AYLDIEQRLNAARAIRRLS 118 (177)
T ss_pred ccCCHHHHHHHHHHHHHHH
Confidence 4444445555553
|
RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.8e-19 Score=181.54 Aligned_cols=153 Identities=16% Similarity=0.111 Sum_probs=105.9
Q ss_pred CCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccc
Q 020346 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (327)
Q Consensus 136 ~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~ 214 (327)
.++.+.++|++..+++++++.+ +|++++|+|+||||||||+|+|+| +++|++|+|.++|.++...+.
T Consensus 5 ~~~~l~~~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G------------~~~p~~G~i~~~~~~~~~~~~ 72 (490)
T PRK10938 5 QISQGTFRLSDTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAG------------ELPLLSGERQSQFSHITRLSF 72 (490)
T ss_pred EEEeEEEEcCCeeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhc------------cCCCCCceEEECCcccccCCH
Confidence 4567888887777999999998 999999999999999999999999 889999999999876643321
Q ss_pred cCCCcceeeEEEEEEEccCCCeEEeC-cc-cCCccccc-----------------cCHhHHhhhhHHHHHhcCccccccc
Q 020346 215 KSGRGKHTTRHVSLLPLSGGGYLADT-PG-FNQPSLLK-----------------VTKQSLAQTFPEIKEMLKANEPAKC 275 (327)
Q Consensus 215 ~~~~g~~tt~~i~~v~q~~~~~i~Dt-pg-~~~~~l~~-----------------~~~~~l~~~~~~~~~~LSgGq~q~~ 275 (327)
.. ..+.+++++|.+...+... +. +.....+. +......+.. ...|||||+||+
T Consensus 73 ~~-----~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---~~~LSgG~~qrv 144 (490)
T PRK10938 73 EQ-----LQKLVSDEWQRNNTDMLSPGEDDTGRTTAEIIQDEVKDPARCEQLAQQFGITALLDRR---FKYLSTGETRKT 144 (490)
T ss_pred HH-----HHHHhceeccCcchhhcccchhhccccHHHhcccchhHHHHHHHHHHHcCCHhhhhCC---cccCCHHHHHHH
Confidence 11 2345788888643211100 00 00000111 1111111111 234999999999
Q ss_pred cccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 276 SFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 276 ~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
++++++ +.+|.++++|+| ...+.+.++++++.+
T Consensus 145 ~la~al-~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~ 183 (490)
T PRK10938 145 LLCQAL-MSEPDLLILDEPFDGLDVASRQQLAELLASLHQ 183 (490)
T ss_pred HHHHHH-HcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh
Confidence 999999 999999999955 466666677777654
|
|
| >TIGR01192 chvA glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.75 E-value=4.2e-19 Score=182.80 Aligned_cols=142 Identities=15% Similarity=0.254 Sum_probs=105.5
Q ss_pred cCCceeeccCcc-hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccc
Q 020346 135 WGYEPLFCSVES-KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV 212 (327)
Q Consensus 135 ~~~~~~~~s~~~-~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~ 212 (327)
+.++.+.++|.+ ..+++++++.+ +|++++|+|+||+|||||+++|+| +++|++|+|.++|.++.+.
T Consensus 335 i~~~~v~~~y~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g------------~~~~~~G~i~~~g~~~~~~ 402 (585)
T TIGR01192 335 VEFRHITFEFANSSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQR------------VYDPTVGQILIDGIDINTV 402 (585)
T ss_pred EEEEEEEEECCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHcc------------CCCCCCCEEEECCEEhhhC
Confidence 567888999965 56899999998 999999999999999999999999 9999999999999998877
Q ss_pred cccCCCcceeeEEEEEEEccC---CCeEEeCcccCCccccccCH---------hHHhhhhHH--------HHHhcCcccc
Q 020346 213 STKSGRGKHTTRHVSLLPLSG---GGYLADTPGFNQPSLLKVTK---------QSLAQTFPE--------IKEMLKANEP 272 (327)
Q Consensus 213 s~~~~~g~~tt~~i~~v~q~~---~~~i~Dtpg~~~~~l~~~~~---------~~l~~~~~~--------~~~~LSgGq~ 272 (327)
+... .++.++++||++ ++++.|+..+..+....-+. .+.....|+ -...|||||+
T Consensus 403 ~~~~-----~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~ 477 (585)
T TIGR01192 403 TRES-----LRKSIATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGER 477 (585)
T ss_pred CHHH-----HHhheEEEccCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHH
Confidence 6443 677899999985 23444444333221100000 000001110 0123999999
Q ss_pred ccccccccccccCCceEEcccH
Q 020346 273 AKCSFNNCLHLGEPGCVVKGDW 294 (327)
Q Consensus 273 q~~~~~~~~h~~ep~~~v~~~~ 294 (327)
||+++++++ +.+|.++|+|||
T Consensus 478 qrl~lARal-l~~p~ililDEp 498 (585)
T TIGR01192 478 QRLAIARAI-LKNAPILVLDEA 498 (585)
T ss_pred HHHHHHHHH-hcCCCEEEEECC
Confidence 999999999 999999999965
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. |
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.6e-19 Score=162.85 Aligned_cols=154 Identities=17% Similarity=0.297 Sum_probs=104.2
Q ss_pred CceeeccCcc---hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccc
Q 020346 137 YEPLFCSVES---KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV 212 (327)
Q Consensus 137 ~~~~~~s~~~---~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~ 212 (327)
++.+.++|.+ ..+++++++.+ +|++++|+|+||||||||+++|+| +++|++|+|+++|.++...
T Consensus 3 i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G------------~~~~~~G~i~~~g~~~~~~ 70 (238)
T cd03249 3 FKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLER------------FYDPTSGEILLDGVDIRDL 70 (238)
T ss_pred EEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhc------------cCCCCCCEEEECCEehhhc
Confidence 4566677753 35899999998 999999999999999999999999 8899999999999887654
Q ss_pred cccCCCcceeeEEEEEEEccCCC---eEEeCcccCCccc--ccc-------CHhHHhhhhHH--------HHHhcCcccc
Q 020346 213 STKSGRGKHTTRHVSLLPLSGGG---YLADTPGFNQPSL--LKV-------TKQSLAQTFPE--------IKEMLKANEP 272 (327)
Q Consensus 213 s~~~~~g~~tt~~i~~v~q~~~~---~i~Dtpg~~~~~l--~~~-------~~~~l~~~~~~--------~~~~LSgGq~ 272 (327)
+... .++.++|++|++.. ++.|+..+..... ..+ ...+.....+. ....|||||+
T Consensus 71 ~~~~-----~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~ 145 (238)
T cd03249 71 NLRW-----LRSQIGLVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQK 145 (238)
T ss_pred CHHH-----HHhhEEEECCchhhhhhhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHH
Confidence 3221 34568999987422 2222222211100 000 00111111110 0134999999
Q ss_pred ccccccccccccCCceEEcccH------HHHHHHHHHHHHHH
Q 020346 273 AKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIR 308 (327)
Q Consensus 273 q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~ 308 (327)
||+.+++++ +.+|+++|+|+| ...+.+.++++++.
T Consensus 146 qrv~la~al-~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~ 186 (238)
T cd03249 146 QRIAIARAL-LRNPKILLLDEATSALDAESEKLVQEALDRAM 186 (238)
T ss_pred HHHHHHHHH-hcCCCEEEEeCccccCCHHHHHHHHHHHHHhc
Confidence 999999999 899999999965 35555666666653
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.6e-19 Score=163.90 Aligned_cols=154 Identities=16% Similarity=0.225 Sum_probs=116.6
Q ss_pred CCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccc
Q 020346 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (327)
Q Consensus 136 ~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~ 214 (327)
.++.++.+|+++.++++++|.+ +|++.+++|+|||||||++++|+| +++|++|+|.++|.+++..
T Consensus 4 ~ie~vtK~Fg~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILg------------lle~~~G~I~~~g~~~~~~-- 69 (300)
T COG4152 4 EIEGVTKSFGDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILG------------LLEPTEGEITWNGGPLSQE-- 69 (300)
T ss_pred EEecchhccCceeeecceeeeecCCeEEEeecCCCCCccchHHHHhc------------cCCccCceEEEcCcchhhh--
Confidence 4567889999999999999998 999999999999999999999999 9999999999999988653
Q ss_pred cCCCcceeeEEEEEEEccCCC----eEEeCcccCCccccccCHhHHhh-------------hhHHHHHhcCccccccccc
Q 020346 215 KSGRGKHTTRHVSLLPLSGGG----YLADTPGFNQPSLLKVTKQSLAQ-------------TFPEIKEMLKANEPAKCSF 277 (327)
Q Consensus 215 ~~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~~l~~~~~~~l~~-------------~~~~~~~~LSgGq~q~~~~ 277 (327)
.+..|+|+|-+.+. ++.|...+.. .+..+...+... ....-.+.||.|++|++.|
T Consensus 70 -------~~~rIGyLPEERGLy~k~tv~dql~yla-~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQf 141 (300)
T COG4152 70 -------IKNRIGYLPEERGLYPKMTVEDQLKYLA-ELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQF 141 (300)
T ss_pred -------hhhhcccChhhhccCccCcHHHHHHHHH-HhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHH
Confidence 55679999987654 3444433321 122222222111 1111234599999999999
Q ss_pred cccccccCCceEEccc------HHHHHHHHHHHHHHHHhHH
Q 020346 278 NNCLHLGEPGCVVKGD------WERYQYYFQLLDEIRIREE 312 (327)
Q Consensus 278 ~~~~h~~ep~~~v~~~------~~r~~~~~~ll~e~~~~~~ 312 (327)
-.++ +|+|.++|+|+ |-..+.+...+.++++++.
T Consensus 142 isav-iHePeLlILDEPFSGLDPVN~elLk~~I~~lk~~Ga 181 (300)
T COG4152 142 ISAV-IHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGA 181 (300)
T ss_pred HHHH-hcCCCEEEecCCccCCChhhHHHHHHHHHHHHhcCC
Confidence 9777 99999999984 4577777777777766654
|
|
| >PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.7e-19 Score=182.59 Aligned_cols=142 Identities=19% Similarity=0.260 Sum_probs=105.1
Q ss_pred cCCceeeccCcc--hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecc
Q 020346 135 WGYEPLFCSVES--KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (327)
Q Consensus 135 ~~~~~~~~s~~~--~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~ 211 (327)
+.++.+.++|.. ..+++++++.+ +|++++|+|+||+|||||+++|+| +++|++|+|.++|+++.+
T Consensus 314 I~~~~v~~~y~~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g------------~~~p~~G~i~~~g~~~~~ 381 (569)
T PRK10789 314 LDVNIRQFTYPQTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQR------------HFDVSEGDIRFHDIPLTK 381 (569)
T ss_pred EEEEEEEEECCCCCCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhc------------ccCCCCCEEEECCEEHhh
Confidence 456778888864 46899999998 999999999999999999999999 999999999999999887
Q ss_pred ccccCCCcceeeEEEEEEEccC---CCeEEeCcccCCccccccCHhH---HhhhhHHH--------------HHhcCccc
Q 020346 212 VSTKSGRGKHTTRHVSLLPLSG---GGYLADTPGFNQPSLLKVTKQS---LAQTFPEI--------------KEMLKANE 271 (327)
Q Consensus 212 ~s~~~~~g~~tt~~i~~v~q~~---~~~i~Dtpg~~~~~l~~~~~~~---l~~~~~~~--------------~~~LSgGq 271 (327)
.+... .+++++++||++ .+++.|+..+..+....-.... .....+.+ ...|||||
T Consensus 382 ~~~~~-----~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq 456 (569)
T PRK10789 382 LQLDS-----WRSRLAVVSQTPFLFSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQ 456 (569)
T ss_pred CCHHH-----HHhheEEEccCCeeccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHH
Confidence 76443 677899999975 2344454443322111000000 00000111 12399999
Q ss_pred cccccccccccccCCceEEcccH
Q 020346 272 PAKCSFNNCLHLGEPGCVVKGDW 294 (327)
Q Consensus 272 ~q~~~~~~~~h~~ep~~~v~~~~ 294 (327)
+||+++++++ +.+|.++++|||
T Consensus 457 ~qRi~lARal-l~~~~illlDEp 478 (569)
T PRK10789 457 KQRISIARAL-LLNAEILILDDA 478 (569)
T ss_pred HHHHHHHHHH-hcCCCEEEEECc
Confidence 9999999999 999999999965
|
|
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.1e-19 Score=168.48 Aligned_cols=156 Identities=16% Similarity=0.168 Sum_probs=106.6
Q ss_pred CCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCccccccccccc--------ccceeecc
Q 020346 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPI--------LGSKWFED 206 (327)
Q Consensus 136 ~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~--------~G~i~~~g 206 (327)
.++.+.++|++..+++++++.+ +|++++|+|+||||||||+++|+| +++|+ +|+|.++|
T Consensus 3 ~~~nl~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG------------~~~p~~~~~~~~~~G~i~~~g 70 (272)
T PRK13547 3 TADHLHVARRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAG------------DLTGGGAPRGARVTGDVTLNG 70 (272)
T ss_pred EEEEEEEEECCEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC------------CCCCcccccccCCceEEEECC
Confidence 3567778888778999999998 999999999999999999999999 88898 99999999
Q ss_pred eeeccccccCCCcceeeEEEEEEEccCC----CeEEeCcccCCc-c---ccccCH---hHHhhh---------hHHHHHh
Q 020346 207 QRVGEVSTKSGRGKHTTRHVSLLPLSGG----GYLADTPGFNQP-S---LLKVTK---QSLAQT---------FPEIKEM 266 (327)
Q Consensus 207 ~~v~~~s~~~~~g~~tt~~i~~v~q~~~----~~i~Dtpg~~~~-~---l~~~~~---~~l~~~---------~~~~~~~ 266 (327)
.++...+... .++.++++||.+. .++.|+..+... . ...... ...... .......
T Consensus 71 ~~~~~~~~~~-----~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 145 (272)
T PRK13547 71 EPLAAIDAPR-----LARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTT 145 (272)
T ss_pred EEcccCCHHH-----HHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCccc
Confidence 9876543221 3445788998742 223333222100 0 000000 000110 0011234
Q ss_pred cCccccccccccccccc---------cCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 267 LKANEPAKCSFNNCLHL---------GEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 267 LSgGq~q~~~~~~~~h~---------~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
|||||+||+.|++++ + .+|.++|+|+| ...+.+.+++.++..
T Consensus 146 LSgG~~qrv~laral-~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~ 202 (272)
T PRK13547 146 LSGGELARVQFARVL-AQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLAR 202 (272)
T ss_pred CCHHHHHHHHHHHHH-hccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHH
Confidence 999999999999998 6 59999999965 455666667766644
|
|
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.8e-19 Score=168.73 Aligned_cols=161 Identities=13% Similarity=0.152 Sum_probs=106.0
Q ss_pred cCCceeeccCcch-----hhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeeccee
Q 020346 135 WGYEPLFCSVESK-----LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQR 208 (327)
Q Consensus 135 ~~~~~~~~s~~~~-----~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~ 208 (327)
+.++.+.++|++. .+++++++.+ +|++++|+|+||||||||+++|+| +++|++|+|.++|.+
T Consensus 7 l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G------------l~~p~~G~i~~~g~~ 74 (289)
T PRK13645 7 IILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNG------------LIISETGQTIVGDYA 74 (289)
T ss_pred EEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhc------------CCCCCCceEEECCEE
Confidence 4466788888653 4899999998 999999999999999999999999 899999999999988
Q ss_pred eccccccCCCcceeeEEEEEEEccCCC-----eEEeCcccCCccccccCH-------hHHhhh-------hHHHHHhcCc
Q 020346 209 VGEVSTKSGRGKHTTRHVSLLPLSGGG-----YLADTPGFNQPSLLKVTK-------QSLAQT-------FPEIKEMLKA 269 (327)
Q Consensus 209 v~~~s~~~~~g~~tt~~i~~v~q~~~~-----~i~Dtpg~~~~~l~~~~~-------~~l~~~-------~~~~~~~LSg 269 (327)
+.............++.++|++|.+.. ++.++..+.... ..... .++... .......||+
T Consensus 75 i~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~-~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~ 153 (289)
T PRK13645 75 IPANLKKIKEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVN-LGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSG 153 (289)
T ss_pred ccccccccccHHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCH
Confidence 742100000001145679999997521 122221111000 00000 011111 0111234999
Q ss_pred cccccccccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 270 NEPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 270 Gq~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
||+||+.+++++ +.+|.++|+|+| .-.+.+.+++.++..
T Consensus 154 Gq~qrv~laral-~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~ 198 (289)
T PRK13645 154 GQKRRVALAGII-AMDGNTLVLDEPTGGLDPKGEEDFINLFERLNK 198 (289)
T ss_pred HHHHHHHHHHHH-HhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence 999999999999 999999999965 345556666666643
|
|
| >TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Probab=99.75 E-value=4.7e-19 Score=163.69 Aligned_cols=159 Identities=16% Similarity=0.157 Sum_probs=103.8
Q ss_pred CCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeeccee-----e
Q 020346 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQR-----V 209 (327)
Q Consensus 136 ~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~-----v 209 (327)
.++.+.++|++..+++++++.+ +|++++|+|+||+|||||+++|+| +++|++|+|+++|.+ +
T Consensus 5 ~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G------------~~~~~~G~i~~~g~~~~~~~~ 72 (253)
T TIGR02323 5 QVSGLSKSYGGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAG------------RLAPDHGTATYIMRSGAELEL 72 (253)
T ss_pred EEeeeEEEeCCceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhC------------CCCCCCcEEEEeccccccccc
Confidence 3566777887777899999998 999999999999999999999999 889999999999876 4
Q ss_pred ccccccCCCcceeeEEEEEEEccCCCeEE------eCccc-----CCcccccc--CHhHHhh-------hhHHHHHhcCc
Q 020346 210 GEVSTKSGRGKHTTRHVSLLPLSGGGYLA------DTPGF-----NQPSLLKV--TKQSLAQ-------TFPEIKEMLKA 269 (327)
Q Consensus 210 ~~~s~~~~~g~~tt~~i~~v~q~~~~~i~------Dtpg~-----~~~~l~~~--~~~~l~~-------~~~~~~~~LSg 269 (327)
...+... +.+...+.+++++|++...+. ++... ........ ...++.. ........|||
T Consensus 73 ~~~~~~~-~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSg 151 (253)
T TIGR02323 73 YQLSEAE-RRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSG 151 (253)
T ss_pred ccCCHHH-HHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCH
Confidence 3332110 000123568999997532111 11100 00000000 0000000 11111234999
Q ss_pred cccccccccccccccCCceEEcccH------HHHHHHHHHHHHHH
Q 020346 270 NEPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIR 308 (327)
Q Consensus 270 Gq~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~ 308 (327)
||+||+.+++++ +.+|.++++|+| .-.+.+.++++++.
T Consensus 152 G~~qrv~laral-~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~ 195 (253)
T TIGR02323 152 GMQQRLQIARNL-VTRPRLVFMDEPTGGLDVSVQARLLDLLRGLV 195 (253)
T ss_pred HHHHHHHHHHHH-hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHH
Confidence 999999999999 999999999965 34455556666554
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. |
| >cd01849 YlqF_related_GTPase YlqF-related GTPases | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.9e-17 Score=141.08 Aligned_cols=135 Identities=30% Similarity=0.365 Sum_probs=98.8
Q ss_pred cEEEEEeecCCCCCCh-HHHHHHHHHHHhcCCCEEEEeecCCCCcHHHHHHHHhhhhh-cCCceeeccCcchhhHHHHHh
Q 020346 78 DHLLLLFSMDQPKLEP-FALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHT-WGYEPLFCSVESKLGLDSLLQ 155 (327)
Q Consensus 78 D~lliv~~~~~p~~~~-~~l~r~L~~a~~~~~~~~ivlnK~Dl~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~l~~l~~ 155 (327)
|++++|.++..|..+. ..+.+ ..+...++|+++|+||+|+.+.+....|...+.. .+..++.+|+.+..+++.+..
T Consensus 1 Dvvl~VvD~~~p~~~~~~~i~~--~~~~~~~~p~IiVlNK~Dl~~~~~~~~~~~~~~~~~~~~ii~vSa~~~~gi~~L~~ 78 (155)
T cd01849 1 DVILEVLDARDPLGTRSPDIER--VLIKEKGKKLILVLNKADLVPKEVLRKWLAYLRHSYPTIPFKISATNGQGIEKKES 78 (155)
T ss_pred CEEEEEEeccCCccccCHHHHH--HHHhcCCCCEEEEEechhcCCHHHHHHHHHHHHhhCCceEEEEeccCCcChhhHHH
Confidence 7889999998775443 23342 3345678999999999999877666666655544 345678889887776665544
Q ss_pred h------------------cCCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCC
Q 020346 156 R------------------LRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSG 217 (327)
Q Consensus 156 ~------------------l~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~ 217 (327)
. ..+.+++++|.||+|||||+|+|.+... .. .+
T Consensus 79 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~GKstlin~l~~~~~-------------------------~~----~~ 129 (155)
T cd01849 79 AFTKQTNSNLKSYAKDGKLKKSITVGVIGYPNVGKSSVINALLNKLK-------------------------LK----VG 129 (155)
T ss_pred HHHHHhHHHHHHHHhccccccCcEEEEEccCCCCHHHHHHHHHcccc-------------------------cc----cc
Confidence 2 2457899999999999999999999321 01 23
Q ss_pred CcceeeEEEEEEEccCCCeEEeCccc
Q 020346 218 RGKHTTRHVSLLPLSGGGYLADTPGF 243 (327)
Q Consensus 218 ~g~~tt~~i~~v~q~~~~~i~Dtpg~ 243 (327)
.++|+|+...+++...+.+++||||+
T Consensus 130 ~~~~~t~~~~~~~~~~~~~liDtPG~ 155 (155)
T cd01849 130 NVPGTTTSQQEVKLDNKIKLLDTPGI 155 (155)
T ss_pred CCCCcccceEEEEecCCEEEEECCCC
Confidence 34568888888888777899999996
|
These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases. |
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.75 E-value=4.1e-19 Score=172.39 Aligned_cols=151 Identities=15% Similarity=0.121 Sum_probs=101.2
Q ss_pred eeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCC
Q 020346 140 LFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGR 218 (327)
Q Consensus 140 ~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~ 218 (327)
+.++|++.. + ++++.+ +|++++|+||||||||||+++|+| +++|++|+|.++|.++....... .
T Consensus 5 l~~~~~~~~-~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaG------------l~~p~~G~I~~~g~~i~~~~~~~-~ 69 (354)
T TIGR02142 5 FSKRLGDFS-L-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAG------------LTRPDEGEIVLNGRTLFDSRKGI-F 69 (354)
T ss_pred EEEEECCEE-E-EEEEEECCCCEEEEECCCCCCHHHHHHHHhC------------CCCCCceEEEECCEECccCcccc-c
Confidence 556666544 4 788887 899999999999999999999999 89999999999999875432100 0
Q ss_pred cceeeEEEEEEEccCCC----eEEeCcccCCccc-------------cccCHhHHhhhhHHHHHhcCccccccccccccc
Q 020346 219 GKHTTRHVSLLPLSGGG----YLADTPGFNQPSL-------------LKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCL 281 (327)
Q Consensus 219 g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~~l-------------~~~~~~~l~~~~~~~~~~LSgGq~q~~~~~~~~ 281 (327)
....++.++|++|++.. ++.++..+..... +.+.+....+.. ...|||||+||+++++++
T Consensus 70 ~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~---~~~LSgGqkqRvalAraL 146 (354)
T TIGR02142 70 LPPEKRRIGYVFQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIGHLLGRL---PGRLSGGEKQRVAIGRAL 146 (354)
T ss_pred cchhhCCeEEEecCCccCCCCcHHHHHHHHhhccChhHHHHHHHHHHHHcCChhHhcCC---hhhCCHHHHHHHHHHHHH
Confidence 01134679999997532 2333332211000 001111111111 234999999999999999
Q ss_pred cccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 282 HLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 282 h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
+.+|.++++|+| ...+.+.++++++..
T Consensus 147 -~~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~ 179 (354)
T TIGR02142 147 -LSSPRLLLMDEPLAALDDPRKYEILPYLERLHA 179 (354)
T ss_pred -HcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHH
Confidence 999999999955 455566666666644
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.75 E-value=8.9e-19 Score=160.62 Aligned_cols=152 Identities=16% Similarity=0.201 Sum_probs=106.5
Q ss_pred CceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccccc
Q 020346 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (327)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~ 215 (327)
++.+.++|.+..+++++++.+ +|++++|+|+||+|||||+++|+| +++|++|+|.++|.++...+.
T Consensus 3 i~~l~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G------------~~~~~~G~i~i~g~~~~~~~~- 69 (237)
T TIGR00968 3 IANISKRFGSFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAG------------LEQPDSGRIRLNGQDATRVHA- 69 (237)
T ss_pred EEEEEEEECCeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhc------------CCCCCceEEEECCEEcCcCCh-
Confidence 456777887778999999998 999999999999999999999999 889999999999988754321
Q ss_pred CCCcceeeEEEEEEEccCCC----eEEeCcccCCccccccC----HhHHhhhhH---------HHHHhcCcccccccccc
Q 020346 216 SGRGKHTTRHVSLLPLSGGG----YLADTPGFNQPSLLKVT----KQSLAQTFP---------EIKEMLKANEPAKCSFN 278 (327)
Q Consensus 216 ~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~~l~~~~----~~~l~~~~~---------~~~~~LSgGq~q~~~~~ 278 (327)
.++.++|+||.+.. .+.++..+... ..... ...+.+.+. .....||+||+||+.++
T Consensus 70 ------~~~~i~~~~q~~~~~~~~t~~enl~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~la 142 (237)
T TIGR00968 70 ------RDRKIGFVFQHYALFKHLTVRDNIAFGLE-IRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALA 142 (237)
T ss_pred ------hhcCEEEEecChhhccCCcHHHHHHhHHH-hcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHH
Confidence 34578999987522 11222111100 00000 011111111 11134999999999999
Q ss_pred ccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 279 NCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 279 ~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
+++ +..|.++++|+| .-.+.+.+++.++..
T Consensus 143 ral-~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~ 178 (237)
T TIGR00968 143 RAL-AVEPQVLLLDEPFGALDAKVRKELRSWLRKLHD 178 (237)
T ss_pred HHH-hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH
Confidence 999 999999999955 455666677777654
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=99.75 E-value=5e-19 Score=198.75 Aligned_cols=139 Identities=16% Similarity=0.173 Sum_probs=108.0
Q ss_pred hcCCceeeccCcc--hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeec
Q 020346 134 TWGYEPLFCSVES--KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (327)
Q Consensus 134 ~~~~~~~~~s~~~--~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~ 210 (327)
.+.|+.++++|.. +.+|+++++.+ +|+++||||+||||||||+++|.| +++|++|+|.+||.++.
T Consensus 1284 ~I~f~nVsf~Y~~~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~r------------l~~~~~G~I~IdG~dI~ 1351 (1522)
T TIGR00957 1284 RVEFRNYCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFR------------INESAEGEIIIDGLNIA 1351 (1522)
T ss_pred cEEEEEEEEEeCCCCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhc------------CccCCCCeEEECCEEcc
Confidence 3668899999964 46999999998 999999999999999999999999 99999999999999999
Q ss_pred cccccCCCcceeeEEEEEEEccC---CCeEEeCcccCCccccccCHhHHhhhh------HHH--------------HHhc
Q 020346 211 EVSTKSGRGKHTTRHVSLLPLSG---GGYLADTPGFNQPSLLKVTKQSLAQTF------PEI--------------KEML 267 (327)
Q Consensus 211 ~~s~~~~~g~~tt~~i~~v~q~~---~~~i~Dtpg~~~~~l~~~~~~~l~~~~------~~~--------------~~~L 267 (327)
.++... .+++++++||++ ++++.++..... ..+.+++.... +.+ -..|
T Consensus 1352 ~i~~~~-----LR~~i~iVpQdp~LF~gTIr~NLdp~~----~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~L 1422 (1522)
T TIGR00957 1352 KIGLHD-----LRFKITIIPQDPVLFSGSLRMNLDPFS----QYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENL 1422 (1522)
T ss_pred ccCHHH-----HHhcCeEECCCCcccCccHHHHcCccc----CCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcC
Confidence 998765 788999999986 344444432110 11111111110 001 1239
Q ss_pred CccccccccccccccccCCceEEcccH
Q 020346 268 KANEPAKCSFNNCLHLGEPGCVVKGDW 294 (327)
Q Consensus 268 SgGq~q~~~~~~~~h~~ep~~~v~~~~ 294 (327)
||||+||+++|+++ +.+|+++|+||+
T Consensus 1423 SgGQrQrl~LARAL-Lr~~~ILiLDEa 1448 (1522)
T TIGR00957 1423 SVGQRQLVCLARAL-LRKTKILVLDEA 1448 (1522)
T ss_pred CHHHHHHHHHHHHH-HcCCCEEEEECC
Confidence 99999999999999 999999999954
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules | Back alignment and domain information |
|---|
Probab=99.75 E-value=2e-19 Score=163.41 Aligned_cols=156 Identities=20% Similarity=0.272 Sum_probs=106.1
Q ss_pred cCCceeeccCcc---hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeec
Q 020346 135 WGYEPLFCSVES---KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (327)
Q Consensus 135 ~~~~~~~~s~~~---~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~ 210 (327)
+.++.+.++|.+ ..+++++++.+ +|++++|+|+||+|||||+++|+| +++|++|+|.++|.++.
T Consensus 12 l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G------------l~~~~~G~i~~~g~~~~ 79 (226)
T cd03248 12 VKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLEN------------FYQPQGGQVLLDGKPIS 79 (226)
T ss_pred EEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhc------------CcCCCCcEEEECCCchH
Confidence 345677788864 36899999998 999999999999999999999999 88999999999998876
Q ss_pred cccccCCCcceeeEEEEEEEccCCC---eEEeCcccCCcc--ccc-------cCHhHHhhhh--------HHHHHhcCcc
Q 020346 211 EVSTKSGRGKHTTRHVSLLPLSGGG---YLADTPGFNQPS--LLK-------VTKQSLAQTF--------PEIKEMLKAN 270 (327)
Q Consensus 211 ~~s~~~~~g~~tt~~i~~v~q~~~~---~i~Dtpg~~~~~--l~~-------~~~~~l~~~~--------~~~~~~LSgG 270 (327)
..+... ..+.+++++|.+.. ++.|+..+.... ... ....+....+ ......||||
T Consensus 80 ~~~~~~-----~~~~i~~~~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG 154 (226)
T cd03248 80 QYEHKY-----LHSKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGG 154 (226)
T ss_pred HcCHHH-----HHhhEEEEecccHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHH
Confidence 543211 34678999987522 222222111000 000 0000111111 1112349999
Q ss_pred ccccccccccccccCCceEEcccH------HHHHHHHHHHHHHH
Q 020346 271 EPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIR 308 (327)
Q Consensus 271 q~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~ 308 (327)
|+||+.+++++ +.+|.++++|+| ...+.+.+++.++.
T Consensus 155 ~~qrv~laral-~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~ 197 (226)
T cd03248 155 QKQRVAIARAL-IRNPQVLILDEATSALDAESEQQVQQALYDWP 197 (226)
T ss_pred HHHHHHHHHHH-hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc
Confidence 99999999999 999999999965 34555556666553
|
Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. |
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.7e-19 Score=172.12 Aligned_cols=156 Identities=19% Similarity=0.187 Sum_probs=104.3
Q ss_pred CceeeccCc----chhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCccccccccc----ccccceeecce
Q 020346 137 YEPLFCSVE----SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFE----PILGSKWFEDQ 207 (327)
Q Consensus 137 ~~~~~~s~~----~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~----p~~G~i~~~g~ 207 (327)
++.+.++|. ...+++++++.+ +|++++|+|+||||||||+++|+| +.+ |++|+|+|+|+
T Consensus 6 v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~G------------l~~~~~~~~~G~i~~~g~ 73 (330)
T PRK15093 6 IRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICG------------VTKDNWRVTADRMRFDDI 73 (330)
T ss_pred EeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHc------------cCCCCCCCcceEEEECCE
Confidence 456667773 346899999998 999999999999999999999999 554 68999999999
Q ss_pred eeccccccCCCcceeeEEEEEEEccCCCeEE------eCccc--C-----C----c----------cccccCHh---HHh
Q 020346 208 RVGEVSTKSGRGKHTTRHVSLLPLSGGGYLA------DTPGF--N-----Q----P----------SLLKVTKQ---SLA 257 (327)
Q Consensus 208 ~v~~~s~~~~~g~~tt~~i~~v~q~~~~~i~------Dtpg~--~-----~----~----------~l~~~~~~---~l~ 257 (327)
++...+.... .+...+.++|+||++..++. ++... . . . .++.+.+. +..
T Consensus 74 ~i~~~~~~~~-~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~ 152 (330)
T PRK15093 74 DLLRLSPRER-RKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAM 152 (330)
T ss_pred ECCcCCHHHH-HHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHH
Confidence 8866543210 01123579999998642211 11100 0 0 0 00011111 011
Q ss_pred hhhHHHHHhcCccccccccccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 258 QTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 258 ~~~~~~~~~LSgGq~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
+.+| ..|||||+||+.+++++ +.+|.++|+|+| .-.....++++++.+
T Consensus 153 ~~~p---~~LSgG~~QRv~iArAL-~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~ 206 (330)
T PRK15093 153 RSFP---YELTEGECQKVMIAIAL-ANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQ 206 (330)
T ss_pred hCCc---hhCCHHHHHHHHHHHHH-HCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH
Confidence 1222 24999999999999999 999999999965 344555666666644
|
|
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.7e-19 Score=177.45 Aligned_cols=152 Identities=17% Similarity=0.251 Sum_probs=102.4
Q ss_pred eeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCC
Q 020346 140 LFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGR 218 (327)
Q Consensus 140 ~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~ 218 (327)
+...|+...+++++++.+ +|++++|+|+||||||||+++|+| +++|++|+|+++|.++...+....
T Consensus 34 ~~~~~~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~G------------l~~p~sG~I~i~G~~i~~~~~~~l- 100 (400)
T PRK10070 34 ILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNR------------LIEPTRGQVLIDGVDIAKISDAEL- 100 (400)
T ss_pred HHhhcCCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHc------------CCCCCCCEEEECCEECCcCCHHHH-
Confidence 344444455789999998 899999999999999999999999 999999999999998876543210
Q ss_pred cceeeEEEEEEEccCCC----eEEeCcccCCc----c-----------ccccCHhHHhhhhHHHHHhcCccccccccccc
Q 020346 219 GKHTTRHVSLLPLSGGG----YLADTPGFNQP----S-----------LLKVTKQSLAQTFPEIKEMLKANEPAKCSFNN 279 (327)
Q Consensus 219 g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~----~-----------l~~~~~~~l~~~~~~~~~~LSgGq~q~~~~~~ 279 (327)
.+..++.++|++|.+.. ++.|+..+... . ++.+.+....+..+ ..|||||+||+.+++
T Consensus 101 ~~~~~~~igyv~Q~~~l~~~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~---~~LSgGq~QRv~LAr 177 (400)
T PRK10070 101 REVRRKKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYP---DELSGGMRQRVGLAR 177 (400)
T ss_pred HHHHhCCEEEEECCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCc---ccCCHHHHHHHHHHH
Confidence 00013468999997532 22233222100 0 00111111111222 349999999999999
Q ss_pred cccccCCceEEcccH------HHHHHHHHHHHHHH
Q 020346 280 CLHLGEPGCVVKGDW------ERYQYYFQLLDEIR 308 (327)
Q Consensus 280 ~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~ 308 (327)
++ +.+|.++|+|+| ...+.+.+++.++.
T Consensus 178 AL-~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~ 211 (400)
T PRK10070 178 AL-AINPDILLMDEAFSALDPLIRTEMQDELVKLQ 211 (400)
T ss_pred HH-hcCCCEEEEECCCccCCHHHHHHHHHHHHHHH
Confidence 99 999999999965 34455555555554
|
|
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=5.9e-19 Score=198.22 Aligned_cols=139 Identities=17% Similarity=0.233 Sum_probs=106.5
Q ss_pred hcCCceeeccCcc--hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeec
Q 020346 134 TWGYEPLFCSVES--KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (327)
Q Consensus 134 ~~~~~~~~~s~~~--~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~ 210 (327)
.+.|+.+.++|.. +.+|+++++.+ +|+++||||+||||||||+++|+| +++|++|+|.+||.++.
T Consensus 1308 ~I~f~nVsf~Y~~~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlr------------l~~p~~G~I~IDG~di~ 1375 (1560)
T PTZ00243 1308 SLVFEGVQMRYREGLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMR------------MVEVCGGEIRVNGREIG 1375 (1560)
T ss_pred eEEEEEEEEEeCCCCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhC------------CCCCCCcEEEECCEEcc
Confidence 3668899999965 45999999998 999999999999999999999999 99999999999999999
Q ss_pred cccccCCCcceeeEEEEEEEccC---CCeEEeCcccCCccccccCHhHHhhhh-----HH-H--------------HHhc
Q 020346 211 EVSTKSGRGKHTTRHVSLLPLSG---GGYLADTPGFNQPSLLKVTKQSLAQTF-----PE-I--------------KEML 267 (327)
Q Consensus 211 ~~s~~~~~g~~tt~~i~~v~q~~---~~~i~Dtpg~~~~~l~~~~~~~l~~~~-----~~-~--------------~~~L 267 (327)
.++... .++.++++||++ ++++.++.-... ..+.+++.... .+ + -..|
T Consensus 1376 ~i~l~~-----LR~~I~iVpQdp~LF~gTIreNIdp~~----~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nL 1446 (1560)
T PTZ00243 1376 AYGLRE-----LRRQFSMIPQDPVLFDGTVRQNVDPFL----EASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNY 1446 (1560)
T ss_pred cCCHHH-----HHhcceEECCCCccccccHHHHhCccc----CCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcC
Confidence 987655 788999999985 334444432111 11111111110 01 1 1249
Q ss_pred CccccccccccccccccC-CceEEcccH
Q 020346 268 KANEPAKCSFNNCLHLGE-PGCVVKGDW 294 (327)
Q Consensus 268 SgGq~q~~~~~~~~h~~e-p~~~v~~~~ 294 (327)
||||+||+++|+++ +.+ |.++|+||+
T Consensus 1447 SgGQrQrLaLARAL-L~~~~~ILlLDEA 1473 (1560)
T PTZ00243 1447 SVGQRQLMCMARAL-LKKGSGFILMDEA 1473 (1560)
T ss_pred CHHHHHHHHHHHHH-hcCCCCEEEEeCC
Confidence 99999999999999 875 899999954
|
|
| >cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.2e-18 Score=148.37 Aligned_cols=107 Identities=21% Similarity=0.260 Sum_probs=89.0
Q ss_pred CceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccccc
Q 020346 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (327)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~ 215 (327)
++.+.++|.+..+++++++.+ +|++++|+|+||+|||||+++|+| +++|++|+|+++|.
T Consensus 3 ~~~l~~~~~~~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G------------~~~~~~G~i~~~~~-------- 62 (144)
T cd03221 3 LENLSKTYGGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAG------------ELEPDEGIVTWGST-------- 62 (144)
T ss_pred EEEEEEEECCceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcC------------CCCCCceEEEECCe--------
Confidence 456677776667899999998 999999999999999999999999 89999999999873
Q ss_pred CCCcceeeEEEEEEEccCCCeEEeCcccCCccccccCHhHHhhhhHHHHHhcCccccccccccccccccCCceEEcccHH
Q 020346 216 SGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE 295 (327)
Q Consensus 216 ~~~g~~tt~~i~~v~q~~~~~i~Dtpg~~~~~l~~~~~~~l~~~~~~~~~~LSgGq~q~~~~~~~~h~~ep~~~v~~~~~ 295 (327)
..++|++| ||+||+||+.+++++ +.+|.++++|+|.
T Consensus 63 --------~~i~~~~~-----------------------------------lS~G~~~rv~laral-~~~p~illlDEP~ 98 (144)
T cd03221 63 --------VKIGYFEQ-----------------------------------LSGGEKMRLALAKLL-LENPNLLLLDEPT 98 (144)
T ss_pred --------EEEEEEcc-----------------------------------CCHHHHHHHHHHHHH-hcCCCEEEEeCCc
Confidence 25677776 999999999999999 9999999999653
Q ss_pred ------HHHHHHHHHHHH
Q 020346 296 ------RYQYYFQLLDEI 307 (327)
Q Consensus 296 ------r~~~~~~ll~e~ 307 (327)
....+.++++++
T Consensus 99 ~~LD~~~~~~l~~~l~~~ 116 (144)
T cd03221 99 NHLDLESIEALEEALKEY 116 (144)
T ss_pred cCCCHHHHHHHHHHHHHc
Confidence 444444555543
|
EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. |
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=8.2e-19 Score=164.00 Aligned_cols=158 Identities=13% Similarity=0.225 Sum_probs=106.0
Q ss_pred cCCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCccccccccc-----ccccceeeccee
Q 020346 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFE-----PILGSKWFEDQR 208 (327)
Q Consensus 135 ~~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~-----p~~G~i~~~g~~ 208 (327)
+.++.+.++|++..+++++++.+ +|++++|+|+||||||||+++|+| +++ |++|+|.++|.+
T Consensus 14 l~i~nl~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G------------l~~~~~~~p~~G~v~~~g~~ 81 (269)
T PRK14259 14 ISLQNVTISYGTFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNR------------MNDLIEGCSLKGRVLFDGTD 81 (269)
T ss_pred EEEEeEEEEECCEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhc------------cccccCCCCCceEEEECCEE
Confidence 44677888888778999999998 999999999999999999999999 665 699999999988
Q ss_pred eccccccCCCcceeeEEEEEEEccCCCe---EEeCcccCCc--cccccCHhHHhhhh-------------HHHHHhcCcc
Q 020346 209 VGEVSTKSGRGKHTTRHVSLLPLSGGGY---LADTPGFNQP--SLLKVTKQSLAQTF-------------PEIKEMLKAN 270 (327)
Q Consensus 209 v~~~s~~~~~g~~tt~~i~~v~q~~~~~---i~Dtpg~~~~--~l~~~~~~~l~~~~-------------~~~~~~LSgG 270 (327)
+...+... ...++.++|+||.+..+ +.|+..+... .......+...... ......||+|
T Consensus 82 i~~~~~~~---~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G 158 (269)
T PRK14259 82 LYDPRVDP---VEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECKDKLNESGYSLSGG 158 (269)
T ss_pred cccccCCH---HHHhhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHH
Confidence 75321100 11345799999975322 2222211100 00000000001100 1112349999
Q ss_pred ccccccccccccccCCceEEcccH------HHHHHHHHHHHHHH
Q 020346 271 EPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIR 308 (327)
Q Consensus 271 q~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~ 308 (327)
|+||+++++++ +.+|.++++|+| .....+.++++++.
T Consensus 159 ~~qrl~laral-~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~ 201 (269)
T PRK14259 159 QQQRLCIARTI-AIEPEVILMDEPCSALDPISTLKIEETMHELK 201 (269)
T ss_pred HHHHHHHHHHH-hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh
Confidence 99999999999 999999999965 45555566666663
|
|
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=6.6e-19 Score=163.33 Aligned_cols=158 Identities=13% Similarity=0.134 Sum_probs=105.9
Q ss_pred cCCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccc-----cccceeeccee
Q 020346 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEP-----ILGSKWFEDQR 208 (327)
Q Consensus 135 ~~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p-----~~G~i~~~g~~ 208 (327)
+.++.+.++|++..+++++++.+ +|++++|+|+||||||||+++|+| +++| ++|+|.++|.+
T Consensus 5 l~i~~v~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laG------------l~~~~~~~~~~G~I~~~g~~ 72 (258)
T PRK14241 5 IDVKDLNIYYGSFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNR------------MHEVIPGARVEGEVLLDGED 72 (258)
T ss_pred EEEeeEEEEECCEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhc------------cCCcccCCCcceEEEECCEe
Confidence 34577888887778999999998 999999999999999999999999 6653 79999999988
Q ss_pred eccccccCCCcceeeEEEEEEEccCCC----eEEeCcccCCccccccCH-------hHHhhh----------hHHHHHhc
Q 020346 209 VGEVSTKSGRGKHTTRHVSLLPLSGGG----YLADTPGFNQPSLLKVTK-------QSLAQT----------FPEIKEML 267 (327)
Q Consensus 209 v~~~s~~~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~~l~~~~~-------~~l~~~----------~~~~~~~L 267 (327)
+...+... ...++.+++++|.... ++.|+..+.......... .++... .......|
T Consensus 73 ~~~~~~~~---~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~L 149 (258)
T PRK14241 73 LYGPGVDP---VAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGL 149 (258)
T ss_pred ccccccCh---HHHhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccC
Confidence 74321100 0145679999987432 222222111000000000 011100 01112349
Q ss_pred CccccccccccccccccCCceEEcccH------HHHHHHHHHHHHHH
Q 020346 268 KANEPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIR 308 (327)
Q Consensus 268 SgGq~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~ 308 (327)
||||+||+++++++ +.+|.++++|+| .....+.++++++.
T Consensus 150 S~G~~qrv~laral-~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~ 195 (258)
T PRK14241 150 SGGQQQRLCIARAI-AVEPDVLLMDEPCSALDPISTLAIEDLINELK 195 (258)
T ss_pred CHHHHHHHHHHHHH-hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh
Confidence 99999999999999 899999999955 45566667777663
|
|
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.1e-18 Score=171.53 Aligned_cols=159 Identities=12% Similarity=0.157 Sum_probs=121.8
Q ss_pred CceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccccc
Q 020346 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (327)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~ 215 (327)
++.++..|+.-.+.+++++.+ +|++.+|+|.||||||||+|+|.| +|+|++|+|+++|+++.--++.
T Consensus 7 ~~~itK~f~~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G------------~~~P~~GeI~v~G~~v~~~sP~ 74 (501)
T COG3845 7 MRGITKRFPGVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFG------------LYQPDSGEIRVDGKEVRIKSPR 74 (501)
T ss_pred EeccEEEcCCEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhC------------cccCCcceEEECCEEeccCCHH
Confidence 456778888888999999998 999999999999999999999999 9999999999999999877765
Q ss_pred CCCcceeeEEEEEEEccC----CCeEEeCcccCCcc--ccccCHhHHhhhhHHH-------------HHhcCcccccccc
Q 020346 216 SGRGKHTTRHVSLLPLSG----GGYLADTPGFNQPS--LLKVTKQSLAQTFPEI-------------KEMLKANEPAKCS 276 (327)
Q Consensus 216 ~~~g~~tt~~i~~v~q~~----~~~i~Dtpg~~~~~--l~~~~~~~l~~~~~~~-------------~~~LSgGq~q~~~ 276 (327)
.. .+..|+||+|.+ +.++.++..+.... ...++.........++ ...||-||+||+.
T Consensus 75 dA----~~~GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVE 150 (501)
T COG3845 75 DA----IRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVE 150 (501)
T ss_pred HH----HHcCCcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHH
Confidence 54 678899999964 33444444433322 1122222222222222 2238999999999
Q ss_pred ccccccccCCceEEcccH------HHHHHHHHHHHHHHHhHH
Q 020346 277 FNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRIREE 312 (327)
Q Consensus 277 ~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~~~~ 312 (327)
+-.|+ ...|+++|+|+| +-.+.++.+++.++..++
T Consensus 151 IlKaL-yr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~ 191 (501)
T COG3845 151 ILKAL-YRGARLLILDEPTAVLTPQEADELFEILRRLAAEGK 191 (501)
T ss_pred HHHHH-hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCC
Confidence 99999 999999999975 577778888888777665
|
|
| >cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome | Back alignment and domain information |
|---|
Probab=99.74 E-value=1e-18 Score=152.05 Aligned_cols=127 Identities=24% Similarity=0.268 Sum_probs=94.2
Q ss_pred CceeeccCc-chhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccc
Q 020346 137 YEPLFCSVE-SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (327)
Q Consensus 137 ~~~~~~s~~-~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~ 214 (327)
++.+.++|. ++.+++++++.+ +|++++|+|+||+|||||+++|+| +++|++|+|.+++.
T Consensus 3 ~~~~~~~~~~~~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G------------~~~~~~G~i~~~~~------- 63 (166)
T cd03223 3 LENLSLATPDGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAG------------LWPWGSGRIGMPEG------- 63 (166)
T ss_pred EEEEEEEcCCCCeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhc------------CCCCCCceEEECCC-------
Confidence 456677774 356899999998 999999999999999999999999 88999999998652
Q ss_pred cCCCcceeeEEEEEEEccCCCeEEeCcccCCccccccCHhHHhhhhHHHHHhcCccccccccccccccccCCceEEcccH
Q 020346 215 KSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDW 294 (327)
Q Consensus 215 ~~~~g~~tt~~i~~v~q~~~~~i~Dtpg~~~~~l~~~~~~~l~~~~~~~~~~LSgGq~q~~~~~~~~h~~ep~~~v~~~~ 294 (327)
+.++|++|++.. +.....+++... ....||+||+||+.+++++ +.+|.++++|+|
T Consensus 64 ---------~~i~~~~q~~~~-------~~~tv~~nl~~~--------~~~~LS~G~~~rv~laral-~~~p~~lllDEP 118 (166)
T cd03223 64 ---------EDLLFLPQRPYL-------PLGTLREQLIYP--------WDDVLSGGEQQRLAFARLL-LHKPKFVFLDEA 118 (166)
T ss_pred ---------ceEEEECCCCcc-------ccccHHHHhhcc--------CCCCCCHHHHHHHHHHHHH-HcCCCEEEEECC
Confidence 468899986321 111222222111 1234999999999999999 999999999965
Q ss_pred ------HHHHHHHHHHHHH
Q 020346 295 ------ERYQYYFQLLDEI 307 (327)
Q Consensus 295 ------~r~~~~~~ll~e~ 307 (327)
...+.+.++++++
T Consensus 119 t~~LD~~~~~~l~~~l~~~ 137 (166)
T cd03223 119 TSALDEESEDRLYQLLKEL 137 (166)
T ss_pred ccccCHHHHHHHHHHHHHh
Confidence 3444444555543
|
The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt |
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=5.4e-19 Score=171.48 Aligned_cols=152 Identities=17% Similarity=0.211 Sum_probs=100.8
Q ss_pred eeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCC
Q 020346 139 PLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSG 217 (327)
Q Consensus 139 ~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~ 217 (327)
.+.++|++.. + ++++.+ +|++++|+||||||||||+++|+| +++|++|+|+++|.++.......
T Consensus 5 ~l~k~~~~~~-~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaG------------l~~p~~G~I~~~g~~~~~~~~~~- 69 (352)
T PRK11144 5 NFKQQLGDLC-L-TVNLTLPAQGITAIFGRSGAGKTSLINAISG------------LTRPQKGRIVLNGRVLFDAEKGI- 69 (352)
T ss_pred EEEEEeCCEE-E-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhC------------CCCCCceEEEECCEEcccccccc-
Confidence 3556666543 2 788887 899999999999999999999999 89999999999998875422100
Q ss_pred CcceeeEEEEEEEccCCC----eEEeCcccCCcc---------ccccCHhHHhhhhHHHHHhcCcccccccccccccccc
Q 020346 218 RGKHTTRHVSLLPLSGGG----YLADTPGFNQPS---------LLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLG 284 (327)
Q Consensus 218 ~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~~---------l~~~~~~~l~~~~~~~~~~LSgGq~q~~~~~~~~h~~ 284 (327)
..+...+.++|++|+... ++.|+..+.... ++.+......+..+ ..|||||+||+++++++ +.
T Consensus 70 ~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~---~~LSgGq~qRvalaraL-~~ 145 (352)
T PRK11144 70 CLPPEKRRIGYVFQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVALLGIEPLLDRYP---GSLSGGEKQRVAIGRAL-LT 145 (352)
T ss_pred ccchhhCCEEEEcCCcccCCCCcHHHHHHhhhhhhhHHHHHHHHHHcCCchhhhCCc---ccCCHHHHHHHHHHHHH-Hc
Confidence 000134679999997522 223333221100 01111111112222 34999999999999999 99
Q ss_pred CCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 285 EPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 285 ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
+|+++++|+| ...+.+.++++++..
T Consensus 146 ~p~llLLDEPts~LD~~~~~~l~~~L~~l~~ 176 (352)
T PRK11144 146 APELLLMDEPLASLDLPRKRELLPYLERLAR 176 (352)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHH
Confidence 9999999965 344555566666543
|
|
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.7e-19 Score=180.90 Aligned_cols=157 Identities=16% Similarity=0.174 Sum_probs=107.6
Q ss_pred CCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccc
Q 020346 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (327)
Q Consensus 136 ~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~ 214 (327)
.++.+.++|++..+++++++.+ +|++++|+|+||||||||+++|+| +++|++|+|+++|.++...+.
T Consensus 6 ~~~~l~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G------------l~~p~~G~I~~~g~~i~~~~~ 73 (501)
T PRK11288 6 SFDGIGKTFPGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSG------------NYQPDAGSILIDGQEMRFAST 73 (501)
T ss_pred EEeeeEEEECCEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhC------------CCCCCCCEEEECCEECCCCCH
Confidence 3566777887777999999998 999999999999999999999999 889999999999988754321
Q ss_pred cCCCcceeeEEEEEEEccCCC----eEEeCcccCCc-cc-cccCH----hHHhhh---------hHHHHHhcCccccccc
Q 020346 215 KSGRGKHTTRHVSLLPLSGGG----YLADTPGFNQP-SL-LKVTK----QSLAQT---------FPEIKEMLKANEPAKC 275 (327)
Q Consensus 215 ~~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~-~l-~~~~~----~~l~~~---------~~~~~~~LSgGq~q~~ 275 (327)
.. ..+++++|++|.+.. ++.|+..+... .. ..... ..+... .......|||||+||+
T Consensus 74 ~~----~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv 149 (501)
T PRK11288 74 TA----ALAAGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMV 149 (501)
T ss_pred HH----HHhCCEEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHH
Confidence 11 134578999997522 23333222110 00 00000 011110 1111234999999999
Q ss_pred cccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 276 SFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 276 ~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
.|++++ +.+|.++|+|+| .-.+.+.+++.++..
T Consensus 150 ~laral-~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~ 188 (501)
T PRK11288 150 EIAKAL-ARNARVIAFDEPTSSLSAREIEQLFRVIRELRA 188 (501)
T ss_pred HHHHHH-HhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHh
Confidence 999999 899999999965 345555666666643
|
|
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=99.74 E-value=6e-19 Score=165.73 Aligned_cols=141 Identities=14% Similarity=0.161 Sum_probs=100.1
Q ss_pred cCCceeeccCc--chhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecc
Q 020346 135 WGYEPLFCSVE--SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (327)
Q Consensus 135 ~~~~~~~~s~~--~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~ 211 (327)
+.++.+.++|. ...+++++++.+ +|++++|+|+||+|||||+++|.| +++ ++|+|+++|.++..
T Consensus 3 i~~~nls~~~~~~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~g------------l~~-~~G~I~i~g~~i~~ 69 (275)
T cd03289 3 MTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLR------------LLN-TEGDIQIDGVSWNS 69 (275)
T ss_pred EEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhh------------hcC-CCcEEEECCEEhhh
Confidence 44678888883 456899999998 999999999999999999999999 776 78999999999876
Q ss_pred ccccCCCcceeeEEEEEEEccCCC---eEEeCcc-cCCcc-------ccccCHhHHhhhhHHH--------HHhcCcccc
Q 020346 212 VSTKSGRGKHTTRHVSLLPLSGGG---YLADTPG-FNQPS-------LLKVTKQSLAQTFPEI--------KEMLKANEP 272 (327)
Q Consensus 212 ~s~~~~~g~~tt~~i~~v~q~~~~---~i~Dtpg-~~~~~-------l~~~~~~~l~~~~~~~--------~~~LSgGq~ 272 (327)
.+... .++.++|+||++.. ++.|+.. +.... ++.+.+......+|.- ...||+||+
T Consensus 70 ~~~~~-----lr~~i~~v~q~~~lf~~tv~~nl~~~~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~ 144 (275)
T cd03289 70 VPLQK-----WRKAFGVIPQKVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHK 144 (275)
T ss_pred CCHHH-----HhhhEEEECCCcccchhhHHHHhhhccCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHH
Confidence 65432 46789999997632 2223321 11000 0111111111111110 012999999
Q ss_pred ccccccccccccCCceEEcccH
Q 020346 273 AKCSFNNCLHLGEPGCVVKGDW 294 (327)
Q Consensus 273 q~~~~~~~~h~~ep~~~v~~~~ 294 (327)
||+.+++++ +.+|+++|+|+|
T Consensus 145 qrl~LaRal-l~~p~illlDEp 165 (275)
T cd03289 145 QLMCLARSV-LSKAKILLLDEP 165 (275)
T ss_pred HHHHHHHHH-hcCCCEEEEECc
Confidence 999999999 999999999965
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >cd03288 ABCC_SUR2 The SUR domain 2 | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.5e-19 Score=165.26 Aligned_cols=155 Identities=13% Similarity=0.103 Sum_probs=106.8
Q ss_pred cCCceeeccCcc--hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecc
Q 020346 135 WGYEPLFCSVES--KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (327)
Q Consensus 135 ~~~~~~~~s~~~--~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~ 211 (327)
+.++.+.++|.+ ..+++++++.+ +|+.++|+|+||+|||||+++|+| +++|++|+|.++|.++..
T Consensus 20 i~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G------------l~~~~~G~i~i~g~~i~~ 87 (257)
T cd03288 20 IKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFR------------MVDIFDGKIVIDGIDISK 87 (257)
T ss_pred EEEEEEEEEeCCCCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHc------------ccCCCCCeEEECCEEhhh
Confidence 456778888865 56899999998 999999999999999999999999 889999999999998866
Q ss_pred ccccCCCcceeeEEEEEEEccCCC---eEEeCcccCCcc----cc----ccCHhHHhhhhH--------HHHHhcCcccc
Q 020346 212 VSTKSGRGKHTTRHVSLLPLSGGG---YLADTPGFNQPS----LL----KVTKQSLAQTFP--------EIKEMLKANEP 272 (327)
Q Consensus 212 ~s~~~~~g~~tt~~i~~v~q~~~~---~i~Dtpg~~~~~----l~----~~~~~~l~~~~~--------~~~~~LSgGq~ 272 (327)
.+... .++.++|++|.+.. ++.++....... .. ..........++ .....||+||+
T Consensus 88 ~~~~~-----~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~ 162 (257)
T cd03288 88 LPLHT-----LRSRLSIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQR 162 (257)
T ss_pred CCHHH-----HhhhEEEECCCCcccccHHHHhcCcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHH
Confidence 54322 45678999987532 111221111000 00 000111111111 00124999999
Q ss_pred ccccccccccccCCceEEcccH------HHHHHHHHHHHHH
Q 020346 273 AKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEI 307 (327)
Q Consensus 273 q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~ 307 (327)
||+.+++++ +.+|+++++|+| ...+.+.++++++
T Consensus 163 qrl~laral-~~~p~llllDEPt~gLD~~~~~~l~~~l~~~ 202 (257)
T cd03288 163 QLFCLARAF-VRKSSILIMDEATASIDMATENILQKVVMTA 202 (257)
T ss_pred HHHHHHHHH-hcCCCEEEEeCCccCCCHHHHHHHHHHHHHh
Confidence 999999999 999999999855 4555555666554
|
The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=99.74 E-value=4e-19 Score=161.59 Aligned_cols=153 Identities=16% Similarity=0.192 Sum_probs=104.2
Q ss_pred CceeeccCcc----hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCccccccccc---ccccceeeccee
Q 020346 137 YEPLFCSVES----KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFE---PILGSKWFEDQR 208 (327)
Q Consensus 137 ~~~~~~s~~~----~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~---p~~G~i~~~g~~ 208 (327)
++.+.+.|.+ ..+++++++.+ +|++++|+|+||||||||+++|+| +++ |++|+|+++|.+
T Consensus 6 ~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G------------~~~~~~~~~G~i~~~g~~ 73 (226)
T cd03234 6 WWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISG------------RVEGGGTTSGQILFNGQP 73 (226)
T ss_pred eecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhC------------ccCCCCCCceEEEECCEE
Confidence 4556666643 57899999998 999999999999999999999999 777 999999999987
Q ss_pred eccccccCCCcceeeEEEEEEEccCCC----eEEeCcccCC----cc--ccccCHhHHhh-hhH---------HHHHhcC
Q 020346 209 VGEVSTKSGRGKHTTRHVSLLPLSGGG----YLADTPGFNQ----PS--LLKVTKQSLAQ-TFP---------EIKEMLK 268 (327)
Q Consensus 209 v~~~s~~~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~----~~--l~~~~~~~l~~-~~~---------~~~~~LS 268 (327)
+... ..++.+++++|++.. ++.|+..+.. .. ........... ..+ .....||
T Consensus 74 ~~~~--------~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS 145 (226)
T cd03234 74 RKPD--------QFQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGIS 145 (226)
T ss_pred CChH--------HhcccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcC
Confidence 6421 145679999987532 2222221100 00 00000000000 111 1123499
Q ss_pred ccccccccccccccccCCceEEcccH------HHHHHHHHHHHHHHHh
Q 020346 269 ANEPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRIR 310 (327)
Q Consensus 269 gGq~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~~ 310 (327)
+||+||+.+++++ +.+|.++++|+| .....+.+++.++.+.
T Consensus 146 ~G~~qrl~laral-~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~ 192 (226)
T cd03234 146 GGERRRVSIAVQL-LWDPKVLILDEPTSGLDSFTALNLVSTLSQLARR 192 (226)
T ss_pred HHHHHHHHHHHHH-HhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHC
Confidence 9999999999999 999999999955 4566666777776543
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.2e-18 Score=162.45 Aligned_cols=158 Identities=12% Similarity=0.174 Sum_probs=106.5
Q ss_pred cCCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCccccccccc-----ccccceeeccee
Q 020346 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFE-----PILGSKWFEDQR 208 (327)
Q Consensus 135 ~~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~-----p~~G~i~~~g~~ 208 (327)
+.++.+.++|++..+++++++.+ +|++++|+|+||+|||||+++|+| +.+ |++|+|.++|.+
T Consensus 22 l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G------------l~~~~~~~~~~G~i~~~g~~ 89 (268)
T PRK14248 22 LEVKDLSIYYGEKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINR------------MNDLIPSARSEGEILYEGLN 89 (268)
T ss_pred EEEEEEEEEeCCceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHh------------cccccCCCCCceEEEECCEE
Confidence 45678888888788999999998 999999999999999999999999 543 799999999998
Q ss_pred eccccccCCCcceeeEEEEEEEccCCC---eEEeCcccCCc--cc-c-ccCHhHHhh-------------hhHHHHHhcC
Q 020346 209 VGEVSTKSGRGKHTTRHVSLLPLSGGG---YLADTPGFNQP--SL-L-KVTKQSLAQ-------------TFPEIKEMLK 268 (327)
Q Consensus 209 v~~~s~~~~~g~~tt~~i~~v~q~~~~---~i~Dtpg~~~~--~l-~-~~~~~~l~~-------------~~~~~~~~LS 268 (327)
+...+... ....++++|++|.+.. ++.|+..+... .. . ......... ........||
T Consensus 90 i~~~~~~~---~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS 166 (268)
T PRK14248 90 ILDSNINV---VNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLS 166 (268)
T ss_pred cccccccH---HHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCC
Confidence 75422110 0135679999997532 22222211100 00 0 000000000 0011123499
Q ss_pred ccccccccccccccccCCceEEcccH------HHHHHHHHHHHHHH
Q 020346 269 ANEPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIR 308 (327)
Q Consensus 269 gGq~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~ 308 (327)
|||+||+.+++++ +.+|+++++|+| ...+...+++.++.
T Consensus 167 gGq~qrl~laral-~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~ 211 (268)
T PRK14248 167 GGQQQRLCIARTL-AMKPAVLLLDEPASALDPISNAKIEELITELK 211 (268)
T ss_pred HHHHHHHHHHHHH-hCCCCEEEEcCCCcccCHHHHHHHHHHHHHHh
Confidence 9999999999999 899999999955 45555666666663
|
|
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.6e-18 Score=160.25 Aligned_cols=157 Identities=13% Similarity=0.239 Sum_probs=104.9
Q ss_pred CCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCccccccccc--c---cccceeecceee
Q 020346 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFE--P---ILGSKWFEDQRV 209 (327)
Q Consensus 136 ~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~--p---~~G~i~~~g~~v 209 (327)
.++.+.++|++..+++++++.+ +|++++|+|+||+|||||+++|+| +.+ | ++|+|.++|.++
T Consensus 8 ~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G------------l~~~~~~~~~~G~i~~~g~~~ 75 (253)
T PRK14261 8 STKNLNLWYGEKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNR------------MNDLIPGCRITGDILYNGENI 75 (253)
T ss_pred EEeeeEEEECCeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhc------------cccCCCCCCcceEEEECCEEc
Confidence 4567777887778999999998 999999999999999999999999 544 3 589999999987
Q ss_pred ccccccCCCcceeeEEEEEEEccCCCe---EEeCcccCCcccc--c-cC-HhHHhh-------------hhHHHHHhcCc
Q 020346 210 GEVSTKSGRGKHTTRHVSLLPLSGGGY---LADTPGFNQPSLL--K-VT-KQSLAQ-------------TFPEIKEMLKA 269 (327)
Q Consensus 210 ~~~s~~~~~g~~tt~~i~~v~q~~~~~---i~Dtpg~~~~~l~--~-~~-~~~l~~-------------~~~~~~~~LSg 269 (327)
...+... ...++.++|++|.+..+ +.|+..+...... . .. ...+.. ........||+
T Consensus 76 ~~~~~~~---~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~ 152 (253)
T PRK14261 76 MDSGADV---VALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSG 152 (253)
T ss_pred cccccch---hhhhceEEEEecCCccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCH
Confidence 6542110 01356799999975332 1222211100000 0 00 000110 01112234999
Q ss_pred cccccccccccccccCCceEEcccH------HHHHHHHHHHHHHH
Q 020346 270 NEPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIR 308 (327)
Q Consensus 270 Gq~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~ 308 (327)
||+||+.+++++ +.+|.++++|+| .-.+.+.++++++.
T Consensus 153 G~~qrv~laral-~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~ 196 (253)
T PRK14261 153 GQQQRLCIARTL-AVNPEVILMDEPCSALDPIATAKIEDLIEDLK 196 (253)
T ss_pred HHHHHHHHHHHH-hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh
Confidence 999999999999 999999999965 34455556666654
|
|
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.5e-18 Score=160.02 Aligned_cols=157 Identities=15% Similarity=0.216 Sum_probs=104.4
Q ss_pred cCCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCccccccccc--c---cccceeeccee
Q 020346 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFE--P---ILGSKWFEDQR 208 (327)
Q Consensus 135 ~~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~--p---~~G~i~~~g~~ 208 (327)
+.++.+.++|++..+++++++.+ +|++++|+|+||+|||||+++|+| +++ | ++|+|+++|.+
T Consensus 4 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G------------~~~~~~~~~~~G~i~~~g~~ 71 (250)
T PRK14240 4 ISVKDLDLFYGDFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNR------------MNDLIPSVKIEGEVLLDGQD 71 (250)
T ss_pred EEEEEEEEEECCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhc------------cccccCCCCCceEEEECCEE
Confidence 34567888887778999999998 999999999999999999999999 554 3 79999999998
Q ss_pred eccccccCCCcceeeEEEEEEEccCCCe---EEeCcccCCcccccc-C----Hh---HHhhhh----------HHHHHhc
Q 020346 209 VGEVSTKSGRGKHTTRHVSLLPLSGGGY---LADTPGFNQPSLLKV-T----KQ---SLAQTF----------PEIKEML 267 (327)
Q Consensus 209 v~~~s~~~~~g~~tt~~i~~v~q~~~~~---i~Dtpg~~~~~l~~~-~----~~---~l~~~~----------~~~~~~L 267 (327)
+...+... ...+..+++++|.+..+ +.++..+... .... . .. ++...+ ......|
T Consensus 72 ~~~~~~~~---~~~~~~i~~~~q~~~~~~~t~~~ni~~~~~-~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~L 147 (250)
T PRK14240 72 IYKSDIDV---NQLRKRVGMVFQQPNPFPMSIYDNVAYGPR-THGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGL 147 (250)
T ss_pred ccccccch---HHHhccEEEEecCCccCcccHHHHHHHHHH-hcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCC
Confidence 75421100 01356799999975321 2222211100 0000 0 00 000010 1112349
Q ss_pred CccccccccccccccccCCceEEcccH------HHHHHHHHHHHHHH
Q 020346 268 KANEPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIR 308 (327)
Q Consensus 268 SgGq~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~ 308 (327)
|+||+||+++++++ +.+|.++++|+| ...+...++++++.
T Consensus 148 S~G~~qrv~laral-~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~ 193 (250)
T PRK14240 148 SGGQQQRLCIARAL-AVEPEVLLMDEPTSALDPISTLKIEELIQELK 193 (250)
T ss_pred CHHHHHHHHHHHHH-hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh
Confidence 99999999999999 999999999965 34445556666653
|
|
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.6e-19 Score=175.50 Aligned_cols=142 Identities=20% Similarity=0.289 Sum_probs=110.1
Q ss_pred cCCceeeccCcchh--hHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecc
Q 020346 135 WGYEPLFCSVESKL--GLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (327)
Q Consensus 135 ~~~~~~~~s~~~~~--~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~ 211 (327)
+.++.++|+|.+++ +++++++.+ +|+.++|+|+||||||||+++|.| .|+|++|+|.++|.++..
T Consensus 337 l~~~~vsF~y~~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~------------~~~~~~G~i~~~g~~~~~ 404 (573)
T COG4987 337 LELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAG------------AWDPQQGSITLNGVEIAS 404 (573)
T ss_pred eeeccceeecCCCccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHh------------ccCCCCCeeeECCcChhh
Confidence 56788999997654 999999998 999999999999999999999999 999999999999999999
Q ss_pred ccccCCCcceeeEEEEEEEccC---CCeEEeCcccCCcc---------ccccCHhHHhhhhHHH--------HHhcCccc
Q 020346 212 VSTKSGRGKHTTRHVSLLPLSG---GGYLADTPGFNQPS---------LLKVTKQSLAQTFPEI--------KEMLKANE 271 (327)
Q Consensus 212 ~s~~~~~g~~tt~~i~~v~q~~---~~~i~Dtpg~~~~~---------l~~~~~~~l~~~~~~~--------~~~LSgGq 271 (327)
++.+. .+..+++++|.. .+++.||.....+. ++.+..+++....|+= -+.|||||
T Consensus 405 l~~~~-----~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE 479 (573)
T COG4987 405 LDEQA-----LRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGE 479 (573)
T ss_pred CChhh-----HHHHHhhhccchHHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchH
Confidence 88754 566788899975 33455554444332 2233333333333321 12399999
Q ss_pred cccccccccccccCCceEEcccH
Q 020346 272 PAKCSFNNCLHLGEPGCVVKGDW 294 (327)
Q Consensus 272 ~q~~~~~~~~h~~ep~~~v~~~~ 294 (327)
+||+++++.+ +++..+.++|+|
T Consensus 480 ~rRLAlAR~L-L~dapl~lLDEP 501 (573)
T COG4987 480 RRRLALARAL-LHDAPLWLLDEP 501 (573)
T ss_pred HHHHHHHHHH-HcCCCeEEecCC
Confidence 9999999999 888889998855
|
|
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.2e-18 Score=162.56 Aligned_cols=158 Identities=11% Similarity=0.174 Sum_probs=106.5
Q ss_pred cCCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCccccccccc-----ccccceeeccee
Q 020346 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFE-----PILGSKWFEDQR 208 (327)
Q Consensus 135 ~~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~-----p~~G~i~~~g~~ 208 (327)
+.++.+.++|.+..+++++++.+ +|++++|+|+||||||||+++|+| +++ |++|+|+++|.+
T Consensus 21 l~~~nl~~~~~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~G------------l~~~~~~~~~~G~i~~~g~~ 88 (267)
T PRK14237 21 LSTKDLHVYYGKKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNR------------MNDTIDIARVTGQILYRGID 88 (267)
T ss_pred EEEeeEEEEECCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHh------------ccCccCCCCcceEEEECCEE
Confidence 45677888887778999999998 999999999999999999999999 665 689999999998
Q ss_pred eccccccCCCcceeeEEEEEEEccCCC---eEEeCcccCCccccccCH----hHH---hhh----------hHHHHHhcC
Q 020346 209 VGEVSTKSGRGKHTTRHVSLLPLSGGG---YLADTPGFNQPSLLKVTK----QSL---AQT----------FPEIKEMLK 268 (327)
Q Consensus 209 v~~~s~~~~~g~~tt~~i~~v~q~~~~---~i~Dtpg~~~~~l~~~~~----~~l---~~~----------~~~~~~~LS 268 (327)
+...+.. ....++.++++||.+.. .+.|+..+.......... ..+ ... .......||
T Consensus 89 ~~~~~~~---~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS 165 (267)
T PRK14237 89 INRKEIN---VYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLS 165 (267)
T ss_pred cccccCC---hHHHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCC
Confidence 7532110 01135679999997532 222222111000000000 000 000 011123499
Q ss_pred ccccccccccccccccCCceEEcccH------HHHHHHHHHHHHHH
Q 020346 269 ANEPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIR 308 (327)
Q Consensus 269 gGq~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~ 308 (327)
+||+||+++++++ +..|.++++|+| ...+.+.+++.++.
T Consensus 166 ~G~~qrl~laral-~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~ 210 (267)
T PRK14237 166 GGQQQRLCIARAI-AVKPDILLMDEPASALDPISTMQLEETMFELK 210 (267)
T ss_pred HHHHHHHHHHHHH-hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh
Confidence 9999999999999 899999999955 45566666666663
|
|
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.2e-18 Score=163.70 Aligned_cols=157 Identities=13% Similarity=0.147 Sum_probs=107.1
Q ss_pred cCCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccc-----cccceeeccee
Q 020346 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEP-----ILGSKWFEDQR 208 (327)
Q Consensus 135 ~~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p-----~~G~i~~~g~~ 208 (327)
+.++.+.++|++..+++++++.+ +|++++|+|+||+|||||+++|+| +++| ++|+|+++|.+
T Consensus 22 l~i~nl~~~~~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~G------------l~~p~~~~~~~G~i~~~g~~ 89 (276)
T PRK14271 22 MAAVNLTLGFAGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNR------------MNDKVSGYRYSGDVLLGGRS 89 (276)
T ss_pred EEEeeEEEEECCEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhc------------cCCcCCCCCCceEEEECCEE
Confidence 34677888888888999999998 999999999999999999999999 7775 79999999988
Q ss_pred eccccccCCCcceeeEEEEEEEccCCCe---EEeCcccCCccccccCHhHH-------hhh----------hHHHHHhcC
Q 020346 209 VGEVSTKSGRGKHTTRHVSLLPLSGGGY---LADTPGFNQPSLLKVTKQSL-------AQT----------FPEIKEMLK 268 (327)
Q Consensus 209 v~~~s~~~~~g~~tt~~i~~v~q~~~~~---i~Dtpg~~~~~l~~~~~~~l-------~~~----------~~~~~~~LS 268 (327)
+...+... ..+..++|++|.+..+ +.++..+...........+. ... .......||
T Consensus 90 i~~~~~~~----~~~~~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS 165 (276)
T PRK14271 90 IFNYRDVL----EFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLS 165 (276)
T ss_pred ccccchhH----HHhhheEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCC
Confidence 76432111 1456789999975322 22222111000000010000 000 011123499
Q ss_pred ccccccccccccccccCCceEEcccH------HHHHHHHHHHHHHH
Q 020346 269 ANEPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIR 308 (327)
Q Consensus 269 gGq~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~ 308 (327)
+||+||+.+++++ +.+|.++|+|+| ...+.+.+++.++.
T Consensus 166 gGq~qrl~LAral-~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~ 210 (276)
T PRK14271 166 GGQQQLLCLARTL-AVNPEVLLLDEPTSALDPTTTEKIEEFIRSLA 210 (276)
T ss_pred HHHHHHHHHHHHH-hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHh
Confidence 9999999999999 899999999965 35555566666654
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.3e-18 Score=172.67 Aligned_cols=145 Identities=21% Similarity=0.296 Sum_probs=102.6
Q ss_pred hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcceeeEE
Q 020346 147 KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRH 225 (327)
Q Consensus 147 ~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~tt~~ 225 (327)
..+++++||.+ +|++++|||+||||||||.++|+| +.+|++|+|.++|.+ ...+ .+..+..++.
T Consensus 304 ~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~g------------L~~P~~G~i~~~g~~-~~~~--~~~~~~~r~~ 368 (539)
T COG1123 304 VKAVDDVSFDLREGETLGLVGESGSGKSTLARILAG------------LLPPSSGSIIFDGQD-LDLT--GGELRRLRRR 368 (539)
T ss_pred eeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhC------------CCCCCCceEEEeCcc-cccc--cchhhhhhhh
Confidence 35789999998 999999999999999999999999 999999999999988 3333 2223346778
Q ss_pred EEEEEccCCCeE------EeC---c-ccCCcc------------ccccCH-hHHhhhhHHHHHhcCcccccccccccccc
Q 020346 226 VSLLPLSGGGYL------ADT---P-GFNQPS------------LLKVTK-QSLAQTFPEIKEMLKANEPAKCSFNNCLH 282 (327)
Q Consensus 226 i~~v~q~~~~~i------~Dt---p-g~~~~~------------l~~~~~-~~l~~~~~~~~~~LSgGq~q~~~~~~~~h 282 (327)
+++++|++...+ .+. | .+.... ++.+.+ .+....+|.. |||||+||++||+++
T Consensus 369 ~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~e---lSGGQrQRvaIARAL- 444 (539)
T COG1123 369 IQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHE---LSGGQRQRVAIARAL- 444 (539)
T ss_pred eEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchh---cCcchhHHHHHHHHH-
Confidence 999999863221 111 1 111000 111111 1233444444 999999999999999
Q ss_pred ccCCceEEcccH------HHHHHHHHHHHHHHHh
Q 020346 283 LGEPGCVVKGDW------ERYQYYFQLLDEIRIR 310 (327)
Q Consensus 283 ~~ep~~~v~~~~------~r~~~~~~ll~e~~~~ 310 (327)
..+|.++|.|++ .-......++.++.++
T Consensus 445 a~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e 478 (539)
T COG1123 445 ALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEE 478 (539)
T ss_pred hcCCCEEEecCCccccCHHHHHHHHHHHHHHHHH
Confidence 999999999854 4555556666666544
|
|
| >cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.9e-18 Score=158.47 Aligned_cols=148 Identities=13% Similarity=0.147 Sum_probs=98.6
Q ss_pred ccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcc
Q 020346 142 CSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGK 220 (327)
Q Consensus 142 ~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~ 220 (327)
.+|+...+++++++.+ +|++++|+|+||||||||+++|+| +++|++|+|.++|.++.....
T Consensus 29 ~~~~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~G------------l~~p~~G~i~~~g~~~~~~~~------ 90 (236)
T cd03267 29 RKYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSG------------LLQPTSGEVRVAGLVPWKRRK------ 90 (236)
T ss_pred cccCCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhC------------CcCCCceEEEECCEEccccch------
Confidence 3455667899999998 999999999999999999999999 889999999999987543221
Q ss_pred eeeEEEEEEEcc-CCC----eEEeCcccCCccccccCHh-------HHhh------hhHHHHHhcCcccccccccccccc
Q 020346 221 HTTRHVSLLPLS-GGG----YLADTPGFNQPSLLKVTKQ-------SLAQ------TFPEIKEMLKANEPAKCSFNNCLH 282 (327)
Q Consensus 221 ~tt~~i~~v~q~-~~~----~i~Dtpg~~~~~l~~~~~~-------~l~~------~~~~~~~~LSgGq~q~~~~~~~~h 282 (327)
.....++|+++. +.. ++.|+..+.. .+...... .+.+ ........||+||+||+.+++++
T Consensus 91 ~~~~~i~~~~~~~~~~~~~~tv~e~l~~~~-~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al- 168 (236)
T cd03267 91 KFLRRIGVVFGQKTQLWWDLPVIDSFYLLA-AIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAAL- 168 (236)
T ss_pred hhcccEEEEcCCccccCCCCcHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHH-
Confidence 145678888743 211 1112111100 00000000 0111 01111234999999999999999
Q ss_pred ccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 283 LGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 283 ~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
+.+|+++++|+| .-.+.+.+++.++..
T Consensus 169 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~ 201 (236)
T cd03267 169 LHEPEILFLDEPTIGLDVVAQENIRNFLKEYNR 201 (236)
T ss_pred hcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHh
Confidence 999999999965 455556666666643
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein. |
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.9e-18 Score=159.60 Aligned_cols=155 Identities=17% Similarity=0.221 Sum_probs=104.9
Q ss_pred CCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCccccccccccc-----ccceeecceee
Q 020346 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPI-----LGSKWFEDQRV 209 (327)
Q Consensus 136 ~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~-----~G~i~~~g~~v 209 (327)
.++.+.++|.+..+++++++.+ +|++++|+|+||+|||||+++|+| +++|+ +|+|+++|.++
T Consensus 6 ~~~~l~~~~~~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~G------------l~~~~~~~~~~G~v~~~g~~~ 73 (251)
T PRK14249 6 KIRGVNFFYHKHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNR------------MNDIVSGARLEGAVLLDNENI 73 (251)
T ss_pred EEEEEEEEECCeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhc------------ccCccccCCcccEEEECCEEc
Confidence 3567778887777999999998 999999999999999999999999 77776 69999999887
Q ss_pred ccccccCCCcceeeEEEEEEEccCCC---eEEeCcccCCccccccC----H-hHHh---h----------hhHHHHHhcC
Q 020346 210 GEVSTKSGRGKHTTRHVSLLPLSGGG---YLADTPGFNQPSLLKVT----K-QSLA---Q----------TFPEIKEMLK 268 (327)
Q Consensus 210 ~~~s~~~~~g~~tt~~i~~v~q~~~~---~i~Dtpg~~~~~l~~~~----~-~~l~---~----------~~~~~~~~LS 268 (327)
...+... ...++.++|+||++.. ++.|+..+... ..... . .... . ........||
T Consensus 74 ~~~~~~~---~~~~~~i~~v~q~~~~~~~tv~enl~~~~~-~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS 149 (251)
T PRK14249 74 YSPNLDV---VNLRKRVGMVFQQPNPFPKSIFDNVAFGPR-MLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALS 149 (251)
T ss_pred cccccCh---HHhhceEEEEecCCccCcCcHHHHHhhHHH-hcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCC
Confidence 5322110 0145679999998532 22222221100 00000 0 0000 0 0011122399
Q ss_pred ccccccccccccccccCCceEEcccH------HHHHHHHHHHHHH
Q 020346 269 ANEPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEI 307 (327)
Q Consensus 269 gGq~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~ 307 (327)
+||+||+++++++ +.+|+++|+|+| .....+.++++++
T Consensus 150 ~Gq~qrv~laral-~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~ 193 (251)
T PRK14249 150 GGQQQRLCIARVL-AIEPEVILMDEPCSALDPVSTMRIEELMQEL 193 (251)
T ss_pred HHHHHHHHHHHHH-hcCCCEEEEeCCCccCCHHHHHHHHHHHHHH
Confidence 9999999999999 999999999965 3445555666666
|
|
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.1e-18 Score=157.34 Aligned_cols=154 Identities=15% Similarity=0.136 Sum_probs=100.9
Q ss_pred eeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCC
Q 020346 139 PLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSG 217 (327)
Q Consensus 139 ~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~ 217 (327)
.+.++|++..+ ++++.+ + ++++|+|+||+|||||+++|+| +++|++|+|+++|.++........
T Consensus 5 ~l~~~~~~~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G------------~~~~~~G~i~~~g~~~~~~~~~~~ 69 (214)
T cd03297 5 DIEKRLPDFTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAG------------LEKPDGGTIVLNGTVLFDSRKKIN 69 (214)
T ss_pred eeeEecCCeee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhC------------CCCCCCceEEECCEecccccchhh
Confidence 46677877655 999998 7 9999999999999999999999 889999999999988753221000
Q ss_pred CcceeeEEEEEEEccCCC----eEEeCcccCCcccc-ccCHhHHhhh---------hHHHHHhcCccccccccccccccc
Q 020346 218 RGKHTTRHVSLLPLSGGG----YLADTPGFNQPSLL-KVTKQSLAQT---------FPEIKEMLKANEPAKCSFNNCLHL 283 (327)
Q Consensus 218 ~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~~l~-~~~~~~l~~~---------~~~~~~~LSgGq~q~~~~~~~~h~ 283 (327)
.....+.+++++|.+.. ++.|+..+...... .......... .......|||||+||+.+++++ +
T Consensus 70 -~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al-~ 147 (214)
T cd03297 70 -LPPQQRKIGLVFQQYALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARAL-A 147 (214)
T ss_pred -hhhHhhcEEEEecCCccCCCCCHHHHHHHHHhhCCHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHH-h
Confidence 01134578999997532 22222211100000 0000000000 0111234999999999999999 9
Q ss_pred cCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 284 GEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 284 ~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
.+|.++++|+| ...+.+.+++.++..
T Consensus 148 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~ 179 (214)
T cd03297 148 AQPELLLLDEPFSALDRALRLQLLPELKQIKK 179 (214)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH
Confidence 99999999965 455556666666644
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.3e-18 Score=160.47 Aligned_cols=157 Identities=12% Similarity=0.159 Sum_probs=104.4
Q ss_pred CCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCccccccccccc-----ccceeecceee
Q 020346 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPI-----LGSKWFEDQRV 209 (327)
Q Consensus 136 ~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~-----~G~i~~~g~~v 209 (327)
.++.+.++|.+..+++++++.+ +|++++|+|+||+|||||+|+|+| +++|+ +|+|+++|.++
T Consensus 6 ~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G------------~~~~~~~~~~~G~i~~~g~~~ 73 (252)
T PRK14272 6 SAQDVNIYYGDKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINR------------MHDLTPGARVTGRILLDGQDI 73 (252)
T ss_pred EEeeeEEEECCEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhc------------cCCCCcCCCCceeEEECCEEc
Confidence 3566777887778999999998 999999999999999999999999 77664 89999999887
Q ss_pred ccccccCCCcceeeEEEEEEEccCCC----eEEeCcccCC--ccccccC--Hh---HHh----------hhhHHHHHhcC
Q 020346 210 GEVSTKSGRGKHTTRHVSLLPLSGGG----YLADTPGFNQ--PSLLKVT--KQ---SLA----------QTFPEIKEMLK 268 (327)
Q Consensus 210 ~~~s~~~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~--~~l~~~~--~~---~l~----------~~~~~~~~~LS 268 (327)
...+... ...+..++|++|.+.. ++.|+..+.. .....-. .+ .+. .........||
T Consensus 74 ~~~~~~~---~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS 150 (252)
T PRK14272 74 YGPRVDP---VAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLS 150 (252)
T ss_pred ccCccCH---HHhhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCC
Confidence 5421110 0145679999997522 2222221100 0000000 00 000 00011123499
Q ss_pred ccccccccccccccccCCceEEcccH------HHHHHHHHHHHHHH
Q 020346 269 ANEPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIR 308 (327)
Q Consensus 269 gGq~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~ 308 (327)
|||+||+++++++ +.+|.++++|+| ...+.+.++++++.
T Consensus 151 ~G~~qrv~laral-~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~ 195 (252)
T PRK14272 151 GGQQQRLCIARAL-AVEPEILLMDEPTSALDPASTARIEDLMTDLK 195 (252)
T ss_pred HHHHHHHHHHHHH-hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh
Confidence 9999999999999 999999999965 34555556666653
|
|
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.4e-18 Score=159.33 Aligned_cols=153 Identities=14% Similarity=0.087 Sum_probs=103.3
Q ss_pred cCCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccc----cccceeecceee
Q 020346 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEP----ILGSKWFEDQRV 209 (327)
Q Consensus 135 ~~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p----~~G~i~~~g~~v 209 (327)
+.++.+.++| +..+++++++.+ +|++++|+|+||||||||+++|+| +.+| ++|+|+++|.++
T Consensus 5 l~~~~l~~~~-~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~G------------l~~~~~~~~~G~i~~~g~~i 71 (254)
T PRK10418 5 IELRNIALQA-AQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALG------------ILPAGVRQTAGRVLLDGKPV 71 (254)
T ss_pred EEEeCeEEEe-ccceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhC------------CCCCCCCCcCCEEEECCeec
Confidence 3456677777 557899999998 999999999999999999999999 7788 999999999887
Q ss_pred ccccccCCCcceeeEEEEEEEccCCCeEE--eCcc----c--CCccccccCHhHHhhhh------------HHHHHhcCc
Q 020346 210 GEVSTKSGRGKHTTRHVSLLPLSGGGYLA--DTPG----F--NQPSLLKVTKQSLAQTF------------PEIKEMLKA 269 (327)
Q Consensus 210 ~~~s~~~~~g~~tt~~i~~v~q~~~~~i~--Dtpg----~--~~~~l~~~~~~~l~~~~------------~~~~~~LSg 269 (327)
... .. ..+.++|++|++...+. .+.. + ...... .....+.... ......||+
T Consensus 72 ~~~---~~----~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~ 143 (254)
T PRK10418 72 APC---AL----RGRKIATIMQNPRSAFNPLHTMHTHARETCLALGKP-ADDATLTAALEAVGLENAARVLKLYPFEMSG 143 (254)
T ss_pred ccc---cc----ccceEEEEecCCccccCccccHHHHHHHHHHHcCCC-hHHHHHHHHHHHcCCCChhhhhhcCCcccCH
Confidence 521 11 34579999997531111 0100 0 000000 0001111100 111234999
Q ss_pred cccccccccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 270 NEPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 270 Gq~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
||+||+.+++++ +.+|.++|+|+| ...+.+.++++++..
T Consensus 144 Gq~qrv~laral-~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~ 188 (254)
T PRK10418 144 GMLQRMMIALAL-LCEAPFIIADEPTTDLDVVAQARILDLLESIVQ 188 (254)
T ss_pred HHHHHHHHHHHH-hcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHH
Confidence 999999999999 999999999965 455556666666543
|
|
| >CHL00131 ycf16 sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Probab=99.73 E-value=7.2e-19 Score=162.22 Aligned_cols=160 Identities=14% Similarity=0.170 Sum_probs=105.1
Q ss_pred cCCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccc
Q 020346 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (327)
Q Consensus 135 ~~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s 213 (327)
+.++.+.++|.+..+++++++.+ +|++++|+|+||+|||||+++|+|.. .++|++|+|+++|.++...+
T Consensus 8 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~----------~~~~~~G~i~~~g~~~~~~~ 77 (252)
T CHL00131 8 LEIKNLHASVNENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHP----------AYKILEGDILFKGESILDLE 77 (252)
T ss_pred EEEEeEEEEeCCEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCC----------cCcCCCceEEECCEEcccCC
Confidence 34567777787667999999998 99999999999999999999999921 16899999999999887654
Q ss_pred ccCCCcceeeEEEEEEEccCCCe----EEeCcccCC-c-----cccccCH-------hHHhhh--h-HH----HHH-hcC
Q 020346 214 TKSGRGKHTTRHVSLLPLSGGGY----LADTPGFNQ-P-----SLLKVTK-------QSLAQT--F-PE----IKE-MLK 268 (327)
Q Consensus 214 ~~~~~g~~tt~~i~~v~q~~~~~----i~Dtpg~~~-~-----~l~~~~~-------~~l~~~--~-~~----~~~-~LS 268 (327)
.... ....+++++|.+..+ ..+...+.. . ....... .++... . +. ... .||
T Consensus 78 ~~~~----~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS 153 (252)
T CHL00131 78 PEER----AHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFS 153 (252)
T ss_pred hhhh----heeeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCC
Confidence 3221 223577888864221 111110000 0 0000000 000000 0 01 112 399
Q ss_pred ccccccccccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 269 ANEPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 269 gGq~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
|||+||+.+++++ +.+|.++|+|+| ...+.+.+++.++..
T Consensus 154 gG~~qrv~la~al-~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~ 199 (252)
T CHL00131 154 GGEKKRNEILQMA-LLDSELAILDETDSGLDIDALKIIAEGINKLMT 199 (252)
T ss_pred HHHHHHHHHHHHH-HcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh
Confidence 9999999999999 999999999965 355556666766654
|
|
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.8e-19 Score=170.48 Aligned_cols=157 Identities=20% Similarity=0.200 Sum_probs=105.1
Q ss_pred CCceeeccCc----chhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCccccccccccc---ccceeecce
Q 020346 136 GYEPLFCSVE----SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPI---LGSKWFEDQ 207 (327)
Q Consensus 136 ~~~~~~~s~~----~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~---~G~i~~~g~ 207 (327)
.++.+.++|. ...+++++++.+ +|++++|+|+||||||||+++|+| +++|+ +|+|+|+|.
T Consensus 14 ~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~G------------l~~p~~~~sG~I~~~G~ 81 (330)
T PRK09473 14 DVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMG------------LLAANGRIGGSATFNGR 81 (330)
T ss_pred EEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHc------------CCCCCCCCCeEEEECCE
Confidence 3456666663 246899999998 999999999999999999999999 88885 999999999
Q ss_pred eeccccccCCCcceeeEEEEEEEccCCCeE------EeCcc----cCC-cc-----------ccccCHhH---HhhhhHH
Q 020346 208 RVGEVSTKSGRGKHTTRHVSLLPLSGGGYL------ADTPG----FNQ-PS-----------LLKVTKQS---LAQTFPE 262 (327)
Q Consensus 208 ~v~~~s~~~~~g~~tt~~i~~v~q~~~~~i------~Dtpg----~~~-~~-----------l~~~~~~~---l~~~~~~ 262 (327)
++...+....+ +...+.++|+||++...+ .++.. ... .. ++.+.+.+ ....+|
T Consensus 82 ~i~~~~~~~~~-~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p- 159 (330)
T PRK09473 82 EILNLPEKELN-KLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYP- 159 (330)
T ss_pred ECCcCCHHHHH-HHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCc-
Confidence 98766533210 011357999999852111 11100 000 00 00011000 011122
Q ss_pred HHHhcCccccccccccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 263 IKEMLKANEPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 263 ~~~~LSgGq~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
..|||||+||+.+++++ +.+|+++|.|+| .......++++++.+
T Consensus 160 --~~LSgG~~QRv~IArAL-~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~ 209 (330)
T PRK09473 160 --HEFSGGMRQRVMIAMAL-LCRPKLLIADEPTTALDVTVQAQIMTLLNELKR 209 (330)
T ss_pred --ccCCHHHHHHHHHHHHH-HcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHH
Confidence 23999999999999999 999999999965 345555666666654
|
|
| >PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.7e-18 Score=160.41 Aligned_cols=158 Identities=16% Similarity=0.179 Sum_probs=105.0
Q ss_pred CceeeccCc---------chhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecc
Q 020346 137 YEPLFCSVE---------SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFED 206 (327)
Q Consensus 137 ~~~~~~s~~---------~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g 206 (327)
++.+.++|. +..+++++++.+ +|++++|+|+||+|||||+++|+| +++|++|+|+++|
T Consensus 6 ~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G------------l~~p~sG~i~~~g 73 (268)
T PRK10419 6 VSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVG------------LESPSQGNVSWRG 73 (268)
T ss_pred EeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhC------------CCCCCCcEEEECC
Confidence 456667775 357899999998 999999999999999999999999 8899999999999
Q ss_pred eeeccccccCCCcceeeEEEEEEEccCCCeEE------eCcccCCccccccCHh----HHhhhh------HH----HHHh
Q 020346 207 QRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLA------DTPGFNQPSLLKVTKQ----SLAQTF------PE----IKEM 266 (327)
Q Consensus 207 ~~v~~~s~~~~~g~~tt~~i~~v~q~~~~~i~------Dtpg~~~~~l~~~~~~----~l~~~~------~~----~~~~ 266 (327)
.++....... .....+.++|++|++...+. ++..+....+..+... .+.... +. ....
T Consensus 74 ~~~~~~~~~~--~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~ 151 (268)
T PRK10419 74 EPLAKLNRAQ--RKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQ 151 (268)
T ss_pred EeccccChhH--HHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCcc
Confidence 9876543211 01135679999997421111 1110000000000000 011100 01 1123
Q ss_pred cCccccccccccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 267 LKANEPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 267 LSgGq~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
||+||+||+.+++++ +.+|+++|+|+| .-.+...++++++..
T Consensus 152 LS~Ge~qrl~laral-~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~ 199 (268)
T PRK10419 152 LSGGQLQRVCLARAL-AVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQ 199 (268)
T ss_pred CChHHHHHHHHHHHH-hcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHH
Confidence 999999999999999 999999999965 344556666666644
|
|
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=6e-19 Score=163.74 Aligned_cols=157 Identities=16% Similarity=0.207 Sum_probs=105.4
Q ss_pred cCCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccc-----cccceeeccee
Q 020346 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEP-----ILGSKWFEDQR 208 (327)
Q Consensus 135 ~~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p-----~~G~i~~~g~~ 208 (327)
+.++.+.+.|++..+++++++.+ +|++++|+|+||+|||||+++|+| +++| ++|+|+++|.+
T Consensus 13 l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G------------l~~~~~~~~~~G~i~~~g~~ 80 (258)
T PRK14268 13 IKVENLNLWYGEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNR------------MNDLIKNCRIEGKVSIEGED 80 (258)
T ss_pred EEEeeeEEEeCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhc------------CCCcccCCCcceEEEECCEE
Confidence 34567777887777999999998 999999999999999999999999 6664 89999999988
Q ss_pred eccccccCCCcceeeEEEEEEEccCCCe---EEeCcccCCccccccCH-------hHHhhhh----------HHHHHhcC
Q 020346 209 VGEVSTKSGRGKHTTRHVSLLPLSGGGY---LADTPGFNQPSLLKVTK-------QSLAQTF----------PEIKEMLK 268 (327)
Q Consensus 209 v~~~s~~~~~g~~tt~~i~~v~q~~~~~---i~Dtpg~~~~~l~~~~~-------~~l~~~~----------~~~~~~LS 268 (327)
+...+... ...++.++|++|.+..+ +.++..+... ...... .++.+.+ ......||
T Consensus 81 i~~~~~~~---~~~~~~i~~v~q~~~~~~~tv~enl~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS 156 (258)
T PRK14268 81 IYEPDVDV---VELRKNVGMVFQKPNPFPMSIYDNVAYGPR-IHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLS 156 (258)
T ss_pred cccccchH---HHHhhhEEEEecCCccCcccHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCC
Confidence 75422100 01346799999975321 2222211100 000000 0111110 11123499
Q ss_pred ccccccccccccccccCCceEEcccH------HHHHHHHHHHHHHH
Q 020346 269 ANEPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIR 308 (327)
Q Consensus 269 gGq~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~ 308 (327)
|||+||+.+++++ +.+|.++++|+| .....+.++++++.
T Consensus 157 gG~~qrv~laral-~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~ 201 (258)
T PRK14268 157 GGQQQRLCIARTL-AVKPKIILFDEPTSALDPISTARIEDLIMNLK 201 (258)
T ss_pred HHHHHHHHHHHHH-HcCCCEEEEeCCCcccCHHHHHHHHHHHHHHh
Confidence 9999999999999 999999999965 34555566666663
|
|
| >PRK13541 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.9e-19 Score=159.12 Aligned_cols=148 Identities=16% Similarity=0.166 Sum_probs=97.7
Q ss_pred CceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccccc
Q 020346 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (327)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~ 215 (327)
++.+.++|.++..++ +++.+ +|++++|+|+||+|||||+++|+| +.+|++|+|+++|.++...+
T Consensus 4 ~~~l~~~~~~~~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G------------~~~~~~G~i~~~g~~i~~~~-- 68 (195)
T PRK13541 4 LHQLQFNIEQKNLFD-LSITFLPSAITYIKGANGCGKSSLLRMIAG------------IMQPSSGNIYYKNCNINNIA-- 68 (195)
T ss_pred EEEeeEEECCcEEEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhc------------CCCCCCcEEEECCcccChhh--
Confidence 456667776655554 88887 999999999999999999999999 88999999999998775432
Q ss_pred CCCcceeeEEEEEEEccCC----CeEEeCcccCCcccccc-CHh------HHhhhhHHHHHhcCcccccccccccccccc
Q 020346 216 SGRGKHTTRHVSLLPLSGG----GYLADTPGFNQPSLLKV-TKQ------SLAQTFPEIKEMLKANEPAKCSFNNCLHLG 284 (327)
Q Consensus 216 ~~~g~~tt~~i~~v~q~~~----~~i~Dtpg~~~~~l~~~-~~~------~l~~~~~~~~~~LSgGq~q~~~~~~~~h~~ 284 (327)
...++++++... .++.|+..+........ ... .+..........||+||+||+.+++++ +.
T Consensus 69 -------~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al-~~ 140 (195)
T PRK13541 69 -------KPYCTYIGHNLGLKLEMTVFENLKFWSEIYNSAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLI-AC 140 (195)
T ss_pred -------hhhEEeccCCcCCCccCCHHHHHHHHHHhcccHHHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHH-hc
Confidence 123677777532 12223222111000000 001 111111122345999999999999999 99
Q ss_pred CCceEEcccH------HHHHHHHHHHHHH
Q 020346 285 EPGCVVKGDW------ERYQYYFQLLDEI 307 (327)
Q Consensus 285 ep~~~v~~~~------~r~~~~~~ll~e~ 307 (327)
+|.++++|+| .-.+.+.+++++.
T Consensus 141 ~p~~lllDEP~~~LD~~~~~~l~~~l~~~ 169 (195)
T PRK13541 141 QSDLWLLDEVETNLSKENRDLLNNLIVMK 169 (195)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 9999999855 3445555555544
|
|
| >COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.73 E-value=8.3e-19 Score=156.36 Aligned_cols=142 Identities=20% Similarity=0.238 Sum_probs=98.1
Q ss_pred CceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccccc
Q 020346 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (327)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~ 215 (327)
.++++++...+..++++++.+ +|+..+|+||||+|||||++.|+| ...|++|++.++|.+....+..
T Consensus 4 a~nls~~~~Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsG------------el~p~~G~v~~~g~~l~~~~~~ 71 (259)
T COG4559 4 AENLSYSLAGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSG------------ELSPDSGEVTLNGVPLNSWPPE 71 (259)
T ss_pred eeeeEEEeecceeccCcceeccCCcEEEEECCCCccHHHHHHHhhC------------ccCCCCCeEeeCCcChhhCCHH
Confidence 456777778899999999998 999999999999999999999999 7899999999999999888765
Q ss_pred CCCcceeeEEEEEEEccCCC----eEEeCcccCCccc-------cc-------cCHhHHhhhhHHHHHhcCccccccccc
Q 020346 216 SGRGKHTTRHVSLLPLSGGG----YLADTPGFNQPSL-------LK-------VTKQSLAQTFPEIKEMLKANEPAKCSF 277 (327)
Q Consensus 216 ~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~~l-------~~-------~~~~~l~~~~~~~~~~LSgGq~q~~~~ 277 (327)
. ..++.+.+||.... ++.|...+..... ++ +...++..........|||||+||+.|
T Consensus 72 ~-----lA~~raVlpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVql 146 (259)
T COG4559 72 E-----LARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQL 146 (259)
T ss_pred H-----HHHHhhhcccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHH
Confidence 4 45677788986422 1222222211110 00 000011111122234499999999999
Q ss_pred ccccc-ccCC----ceEEcccHH
Q 020346 278 NNCLH-LGEP----GCVVKGDWE 295 (327)
Q Consensus 278 ~~~~h-~~ep----~~~v~~~~~ 295 (327)
++.+- +..| ..+++|+|.
T Consensus 147 ARvLaQl~~~v~~~r~L~LDEPt 169 (259)
T COG4559 147 ARVLAQLWPPVPSGRWLFLDEPT 169 (259)
T ss_pred HHHHHHccCCCCCCceEEecCCc
Confidence 98331 3333 377888764
|
|
| >cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.7e-18 Score=155.00 Aligned_cols=128 Identities=20% Similarity=0.240 Sum_probs=90.1
Q ss_pred CceeeccCcch-----hhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeec
Q 020346 137 YEPLFCSVESK-----LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (327)
Q Consensus 137 ~~~~~~s~~~~-----~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~ 210 (327)
++.+.++|.+. .+++++++.+ +|++++|+|+||+|||||+++|+| +++|++|+|.++|
T Consensus 3 ~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G------------~~~~~~G~i~~~g---- 66 (204)
T cd03250 3 VEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLG------------ELEKLSGSVSVPG---- 66 (204)
T ss_pred EeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhC------------cCCCCCCeEEEcC----
Confidence 45677778653 6899999998 999999999999999999999999 8999999999987
Q ss_pred cccccCCCcceeeEEEEEEEccCC---CeEEeCcccCCcccc-cc-------CHhHHhhhhH--------HHHHhcCccc
Q 020346 211 EVSTKSGRGKHTTRHVSLLPLSGG---GYLADTPGFNQPSLL-KV-------TKQSLAQTFP--------EIKEMLKANE 271 (327)
Q Consensus 211 ~~s~~~~~g~~tt~~i~~v~q~~~---~~i~Dtpg~~~~~l~-~~-------~~~~l~~~~~--------~~~~~LSgGq 271 (327)
.++|++|++. .++.|+..+...... .. ........++ .....||+||
T Consensus 67 --------------~i~~~~q~~~l~~~t~~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~ 132 (204)
T cd03250 67 --------------SIAYVSQEPWIQNGTIRENILFGKPFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQ 132 (204)
T ss_pred --------------EEEEEecCchhccCcHHHHhccCCCcCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHH
Confidence 3677777642 222233322111000 00 0000000000 0113499999
Q ss_pred cccccccccccccCCceEEcccHH
Q 020346 272 PAKCSFNNCLHLGEPGCVVKGDWE 295 (327)
Q Consensus 272 ~q~~~~~~~~h~~ep~~~v~~~~~ 295 (327)
+||+.+++++ +.+|.++++|+|.
T Consensus 133 ~qrv~laral-~~~p~llllDEP~ 155 (204)
T cd03250 133 KQRISLARAV-YSDADIYLLDDPL 155 (204)
T ss_pred HHHHHHHHHH-hcCCCEEEEeCcc
Confidence 9999999999 9999999999663
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.3e-18 Score=160.70 Aligned_cols=158 Identities=14% Similarity=0.174 Sum_probs=107.8
Q ss_pred cCCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCccccccccc-----ccccceeeccee
Q 020346 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFE-----PILGSKWFEDQR 208 (327)
Q Consensus 135 ~~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~-----p~~G~i~~~g~~ 208 (327)
+.++.+.++|++..+++++++.+ +|++++|+|+||||||||+++|+| +++ |++|+|+++|.+
T Consensus 20 l~~~nl~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G------------l~~~~~~~~~~G~I~~~g~~ 87 (267)
T PRK14235 20 MRARDVSVFYGEKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNR------------MNDTIDGCRVTGKITLDGED 87 (267)
T ss_pred EEEEeEEEEECCEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHh------------hcccccCCCCceEEEECCEE
Confidence 45678888888778999999998 999999999999999999999999 766 489999999998
Q ss_pred eccccccCCCcceeeEEEEEEEccCCC---eEEeCcccCCc--cc--cccCH----hHHhhh----------hHHHHHhc
Q 020346 209 VGEVSTKSGRGKHTTRHVSLLPLSGGG---YLADTPGFNQP--SL--LKVTK----QSLAQT----------FPEIKEML 267 (327)
Q Consensus 209 v~~~s~~~~~g~~tt~~i~~v~q~~~~---~i~Dtpg~~~~--~l--~~~~~----~~l~~~----------~~~~~~~L 267 (327)
+...+... ...++.+++++|.+.. ++.|+..+... .. ..-.. ..+... .......|
T Consensus 88 i~~~~~~~---~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~L 164 (267)
T PRK14235 88 IYDPRLDV---VELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGL 164 (267)
T ss_pred Ccccccch---HHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccC
Confidence 75422111 0145678999997532 22222221100 00 00000 000100 01112349
Q ss_pred CccccccccccccccccCCceEEcccH------HHHHHHHHHHHHHH
Q 020346 268 KANEPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIR 308 (327)
Q Consensus 268 SgGq~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~ 308 (327)
||||+||+.+++++ +.+|.++|+|+| .....+.++++++.
T Consensus 165 SgGq~qrv~laral-~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~ 210 (267)
T PRK14235 165 SGGQQQRLCIARAI-AVSPEVILMDEPCSALDPIATAKVEELIDELR 210 (267)
T ss_pred CHHHHHHHHHHHHH-HcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHh
Confidence 99999999999999 999999999965 45566666776664
|
|
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.73 E-value=5e-19 Score=173.17 Aligned_cols=152 Identities=17% Similarity=0.157 Sum_probs=101.5
Q ss_pred eeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecce----eecccc
Q 020346 139 PLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQ----RVGEVS 213 (327)
Q Consensus 139 ~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~----~v~~~s 213 (327)
.+..+|+...+++++++.+ +|++++|+|+||||||||+++|+| +++|++|+|+++|. ++...+
T Consensus 29 ~~~~~~g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~G------------l~~p~~G~I~idG~~~~~~i~~~~ 96 (382)
T TIGR03415 29 EILDETGLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNG------------LNPVSRGSVLVKDGDGSIDVANCD 96 (382)
T ss_pred HHHHhhCCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhC------------CCCCCCcEEEECCEecccccccCC
Confidence 3445566667889999998 999999999999999999999999 99999999999996 343332
Q ss_pred ccCCCccee-eEEEEEEEccCCC----eEEeCcccCCc--c-------------ccccCHhHHhhhhHHHHHhcCccccc
Q 020346 214 TKSGRGKHT-TRHVSLLPLSGGG----YLADTPGFNQP--S-------------LLKVTKQSLAQTFPEIKEMLKANEPA 273 (327)
Q Consensus 214 ~~~~~g~~t-t~~i~~v~q~~~~----~i~Dtpg~~~~--~-------------l~~~~~~~l~~~~~~~~~~LSgGq~q 273 (327)
.... +.. .+.++|++|.+.. ++.|+..+... . ++.+......+..+ ..|||||+|
T Consensus 97 ~~~l--~~~r~~~i~~vfQ~~~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~---~~LSgGq~Q 171 (382)
T TIGR03415 97 AATL--RRLRTHRVSMVFQKFALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKP---GELSGGMQQ 171 (382)
T ss_pred HHHH--HHHhcCCEEEEECCCcCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCCh---hhCCHHHHH
Confidence 2110 111 2579999997532 33344332110 0 01111111112222 239999999
Q ss_pred cccccccccccCCceEEcccH------HHHHHHHHHHHHHH
Q 020346 274 KCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIR 308 (327)
Q Consensus 274 ~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~ 308 (327)
|+.+++++ +.+|+++++|+| .-...+..++.++.
T Consensus 172 RV~LARAL-a~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~ 211 (382)
T TIGR03415 172 RVGLARAF-AMDADILLMDEPFSALDPLIRTQLQDELLELQ 211 (382)
T ss_pred HHHHHHHH-hcCCCEEEEECCCccCCHHHHHHHHHHHHHHH
Confidence 99999999 999999999955 33344444444543
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.6e-18 Score=153.46 Aligned_cols=138 Identities=16% Similarity=0.205 Sum_probs=101.3
Q ss_pred ceeeccCcchh-hHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccccc
Q 020346 138 EPLFCSVESKL-GLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (327)
Q Consensus 138 ~~~~~s~~~~~-~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~ 215 (327)
..++.+|++.. ++++++|.+ .|++++|+|+|||||||+|++|.+ ++.|++|.|.++|.++...+..
T Consensus 5 ~~l~K~y~~~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiat------------lL~P~~G~v~idg~d~~~~p~~ 72 (245)
T COG4555 5 TDLTKSYGSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIAT------------LLIPDSGKVTIDGVDTVRDPSF 72 (245)
T ss_pred eehhhhccCHHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHH------------hccCCCceEEEeecccccChHH
Confidence 45667787765 899999998 999999999999999999999999 9999999999999998877654
Q ss_pred CCCcceeeEEEEEEEccCCCeE----EeCcccCCccccccCHh-------------HHhhhhHHHHHhcCcccccccccc
Q 020346 216 SGRGKHTTRHVSLLPLSGGGYL----ADTPGFNQPSLLKVTKQ-------------SLAQTFPEIKEMLKANEPAKCSFN 278 (327)
Q Consensus 216 ~~~g~~tt~~i~~v~q~~~~~i----~Dtpg~~~~~l~~~~~~-------------~l~~~~~~~~~~LSgGq~q~~~~~ 278 (327)
.+++++.++-..+.|- .++..+.. .+..+... ++..+...-...+|.||+||+.+|
T Consensus 73 ------vrr~IGVl~~e~glY~RlT~rEnl~~Fa-~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iA 145 (245)
T COG4555 73 ------VRRKIGVLFGERGLYARLTARENLKYFA-RLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIA 145 (245)
T ss_pred ------HhhhcceecCCcChhhhhhHHHHHHHHH-HHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHH
Confidence 7888998884322221 11111110 01111111 122222222334899999999999
Q ss_pred ccccccCCceEEcccHH
Q 020346 279 NCLHLGEPGCVVKGDWE 295 (327)
Q Consensus 279 ~~~h~~ep~~~v~~~~~ 295 (327)
+++ +++|.++|.|+|.
T Consensus 146 RAl-vh~P~i~vlDEP~ 161 (245)
T COG4555 146 RAL-VHDPSILVLDEPT 161 (245)
T ss_pred HHH-hcCCCeEEEcCCC
Confidence 999 9999999999773
|
|
| >PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.6e-18 Score=160.58 Aligned_cols=142 Identities=18% Similarity=0.227 Sum_probs=98.3
Q ss_pred CCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccc
Q 020346 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (327)
Q Consensus 136 ~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~ 214 (327)
.++.+.++|.+..+++++++.+ +|++++|+|+||+|||||+++|+| +++|++|+|.+++.
T Consensus 6 ~~~~l~~~~~~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~G------------l~~p~~G~i~~~~~------- 66 (251)
T PRK09544 6 SLENVSVSFGQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLG------------LVAPDEGVIKRNGK------- 66 (251)
T ss_pred EEeceEEEECCceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhC------------CCCCCceEEEECCc-------
Confidence 3566777887778999999998 999999999999999999999999 88999999998751
Q ss_pred cCCCcceeeEEEEEEEccCCCeE------EeCcccCC----cc----ccccCHhHHhhhhHHHHHhcCcccccccccccc
Q 020346 215 KSGRGKHTTRHVSLLPLSGGGYL------ADTPGFNQ----PS----LLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNC 280 (327)
Q Consensus 215 ~~~~g~~tt~~i~~v~q~~~~~i------~Dtpg~~~----~~----l~~~~~~~l~~~~~~~~~~LSgGq~q~~~~~~~ 280 (327)
..++|+||++..+. .+...+.. .. ++.+...+..+. ....||+||+||+.|+++
T Consensus 67 ---------~~i~~v~q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~---~~~~LSgGq~qrv~lara 134 (251)
T PRK09544 67 ---------LRIGYVPQKLYLDTTLPLTVNRFLRLRPGTKKEDILPALKRVQAGHLIDA---PMQKLSGGETQRVLLARA 134 (251)
T ss_pred ---------cCEEEeccccccccccChhHHHHHhccccccHHHHHHHHHHcCChHHHhC---ChhhCCHHHHHHHHHHHH
Confidence 24778888642210 01000000 00 001111111111 123499999999999999
Q ss_pred ccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 281 LHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 281 ~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
+ +.+|.++++|+| ...+.+.+++.++..
T Consensus 135 l-~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~ 168 (251)
T PRK09544 135 L-LNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRR 168 (251)
T ss_pred H-hcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHH
Confidence 9 999999999965 355555566666543
|
|
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.2e-18 Score=171.58 Aligned_cols=159 Identities=13% Similarity=0.171 Sum_probs=118.4
Q ss_pred CCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccc
Q 020346 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (327)
Q Consensus 136 ~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~ 214 (327)
..+.+..+|+.-++|+++++.+ +|++++|+|.||||||||+|.|+| .|+|++|+|+++|+++...+.
T Consensus 10 ~~~~i~K~FggV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsG------------v~~p~~G~I~~~G~~~~~~sp 77 (500)
T COG1129 10 ELRGISKSFGGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSG------------VYPPDSGEILIDGKPVAFSSP 77 (500)
T ss_pred eeecceEEcCCceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhC------------cccCCCceEEECCEEccCCCH
Confidence 3577889999999999999998 999999999999999999999999 999999999999999986665
Q ss_pred cCCCcceeeEEEEEEEccC----CCeEEeCcccCCcccc---ccCHhH--------Hhh-----hhHHHHHhcCcccccc
Q 020346 215 KSGRGKHTTRHVSLLPLSG----GGYLADTPGFNQPSLL---KVTKQS--------LAQ-----TFPEIKEMLKANEPAK 274 (327)
Q Consensus 215 ~~~~g~~tt~~i~~v~q~~----~~~i~Dtpg~~~~~l~---~~~~~~--------l~~-----~~~~~~~~LSgGq~q~ 274 (327)
... ....|.+++|+. ++++.+|..+...... -++... +.. ........||.||+|.
T Consensus 78 ~~A----~~~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~ 153 (500)
T COG1129 78 RDA----LAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQM 153 (500)
T ss_pred HHH----HhCCcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHH
Confidence 543 456788899874 3444444433222111 011111 110 1222345599999999
Q ss_pred ccccccccccCCceEEcccHH------HHHHHHHHHHHHHHhH
Q 020346 275 CSFNNCLHLGEPGCVVKGDWE------RYQYYFQLLDEIRIRE 311 (327)
Q Consensus 275 ~~~~~~~h~~ep~~~v~~~~~------r~~~~~~ll~e~~~~~ 311 (327)
+.+++++ ..++.++|+|+|. -.+.+++++++++.++
T Consensus 154 VeIArAl-~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~G 195 (500)
T COG1129 154 VEIARAL-SFDARVLILDEPTAALTVKETERLFDLIRRLKAQG 195 (500)
T ss_pred HHHHHHH-hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCC
Confidence 9999999 5599999999874 5566777777776654
|
|
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.3e-18 Score=158.89 Aligned_cols=156 Identities=15% Similarity=0.198 Sum_probs=104.3
Q ss_pred CCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCccccccccc-----ccccceeecceee
Q 020346 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFE-----PILGSKWFEDQRV 209 (327)
Q Consensus 136 ~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~-----p~~G~i~~~g~~v 209 (327)
.++.+.++|+...+++++++.+ +|++++|+|+||+|||||+++|+| +++ |++|+|.++|+++
T Consensus 6 ~~~~l~~~~~~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~G------------l~~~~p~~~~~G~v~i~g~~~ 73 (251)
T PRK14251 6 SAKDVHLSYGNYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNR------------MNDDIENIKITGEIKFEGQNI 73 (251)
T ss_pred EEEeeEEEECCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhh------------ccccccCCCcceEEEECCEEc
Confidence 4567788887778999999998 999999999999999999999999 665 5899999999987
Q ss_pred ccccccCCCcceeeEEEEEEEccCCCe---EEeCcccCCc--cc--cc-c--CHhHHhhh----------hHHHHHhcCc
Q 020346 210 GEVSTKSGRGKHTTRHVSLLPLSGGGY---LADTPGFNQP--SL--LK-V--TKQSLAQT----------FPEIKEMLKA 269 (327)
Q Consensus 210 ~~~s~~~~~g~~tt~~i~~v~q~~~~~---i~Dtpg~~~~--~l--~~-~--~~~~l~~~----------~~~~~~~LSg 269 (327)
...+... ...++.+++++|++..+ +.|+..+... .. .. . ....+.+. .......||+
T Consensus 74 ~~~~~~~---~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~ 150 (251)
T PRK14251 74 YGSKMDL---VELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSG 150 (251)
T ss_pred ccccchH---HHhhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCH
Confidence 5321110 01356789999975321 2222111000 00 00 0 00000000 0111234999
Q ss_pred cccccccccccccccCCceEEcccH------HHHHHHHHHHHHH
Q 020346 270 NEPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEI 307 (327)
Q Consensus 270 Gq~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~ 307 (327)
||+||+.+++++ +.+|+++|+|+| ...+...++++++
T Consensus 151 Gq~qr~~laral-~~~p~llllDEP~~~LD~~~~~~l~~~l~~~ 193 (251)
T PRK14251 151 GQQQRICIARAL-AVRPKVVLLDEPTSALDPISSSEIEETLMEL 193 (251)
T ss_pred HHHHHHHHHHHH-hcCCCEEEecCCCccCCHHHHHHHHHHHHHH
Confidence 999999999999 899999999955 4555556666665
|
|
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.7e-18 Score=170.39 Aligned_cols=132 Identities=24% Similarity=0.303 Sum_probs=99.3
Q ss_pred chhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcceeeE
Q 020346 146 SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTR 224 (327)
Q Consensus 146 ~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~tt~ 224 (327)
++.++++++|.+ +|+.++||||||||||||.++|.| .++|++|+|.+||-++...+... .-+
T Consensus 348 ~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG------------~w~p~~G~VRLDga~l~qWd~e~-----lG~ 410 (580)
T COG4618 348 KKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVG------------IWPPTSGSVRLDGADLRQWDREQ-----LGR 410 (580)
T ss_pred CCcceecceeEecCCceEEEECCCCccHHHHHHHHHc------------ccccCCCcEEecchhhhcCCHHH-----hcc
Confidence 457899999998 999999999999999999999999 99999999999999998887654 778
Q ss_pred EEEEEEccC---CCeEEeCcccCCcccc--c-cCHhHHhhhhHHHH--------------HhcCcccccccccccccccc
Q 020346 225 HVSLLPLSG---GGYLADTPGFNQPSLL--K-VTKQSLAQTFPEIK--------------EMLKANEPAKCSFNNCLHLG 284 (327)
Q Consensus 225 ~i~~v~q~~---~~~i~Dtpg~~~~~l~--~-~~~~~l~~~~~~~~--------------~~LSgGq~q~~~~~~~~h~~ 284 (327)
|++|+||+- .+++.++..-.....+ . ++...++...+-+. ..|||||+||+.+++|+ .+
T Consensus 411 hiGYLPQdVeLF~GTIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAl-YG 489 (580)
T COG4618 411 HIGYLPQDVELFDGTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARAL-YG 489 (580)
T ss_pred ccCcCcccceecCCcHHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHH-cC
Confidence 999999963 3344444332211110 0 11112222222221 23999999999999999 99
Q ss_pred CCceEEcccHH
Q 020346 285 EPGCVVKGDWE 295 (327)
Q Consensus 285 ep~~~v~~~~~ 295 (327)
+|.+.|+|||.
T Consensus 490 ~P~lvVLDEPN 500 (580)
T COG4618 490 DPFLVVLDEPN 500 (580)
T ss_pred CCcEEEecCCC
Confidence 99999999773
|
|
| >cd03290 ABCC_SUR1_N The SUR domain 1 | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.6e-18 Score=154.36 Aligned_cols=142 Identities=20% Similarity=0.193 Sum_probs=95.7
Q ss_pred ceeeccCc-chhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccccc
Q 020346 138 EPLFCSVE-SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (327)
Q Consensus 138 ~~~~~s~~-~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~ 215 (327)
..+.++|. ...+++++++.+ +|++++|+|+||+|||||+++|+| +++|++|+|+++|.++...+..
T Consensus 4 ~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G------------~~~~~~G~i~~~g~~~~~~~~~ 71 (218)
T cd03290 4 TNGYFSWGSGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILG------------EMQTLEGKVHWSNKNESEPSFE 71 (218)
T ss_pred eeeEEecCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhc------------cCCCCCCeEEECCccccccccc
Confidence 45666775 456899999998 999999999999999999999999 8899999999999887654321
Q ss_pred CCCcceeeEEEEEEEccCCC---eEEeCcccCCccccccCHhHHhhh---hH--------------HHHHhcCccccccc
Q 020346 216 SGRGKHTTRHVSLLPLSGGG---YLADTPGFNQPSLLKVTKQSLAQT---FP--------------EIKEMLKANEPAKC 275 (327)
Q Consensus 216 ~~~g~~tt~~i~~v~q~~~~---~i~Dtpg~~~~~l~~~~~~~l~~~---~~--------------~~~~~LSgGq~q~~ 275 (327)
. .....++.++|++|.+.. .+.|+..+.... ........... .+ .....||+||+||+
T Consensus 72 ~-~~~~~~~~i~~~~q~~~~~~~t~~~nl~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv 149 (218)
T cd03290 72 A-TRSRNRYSVAYAAQKPWLLNATVEENITFGSPF-NKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRI 149 (218)
T ss_pred c-cchhhcceEEEEcCCCccccccHHHHHhhcCcC-CHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHH
Confidence 0 000134578999997532 111221111100 00000000000 00 01235999999999
Q ss_pred cccccccccCCceEEcccH
Q 020346 276 SFNNCLHLGEPGCVVKGDW 294 (327)
Q Consensus 276 ~~~~~~h~~ep~~~v~~~~ 294 (327)
.+++++ +.+|.++++|+|
T Consensus 150 ~laral-~~~p~illlDEP 167 (218)
T cd03290 150 CVARAL-YQNTNIVFLDDP 167 (218)
T ss_pred HHHHHH-hhCCCEEEEeCC
Confidence 999999 999999999966
|
The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.5e-18 Score=159.00 Aligned_cols=151 Identities=19% Similarity=0.272 Sum_probs=103.2
Q ss_pred CceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccccc
Q 020346 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (327)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~ 215 (327)
++.+.++|.+. +++++++.+ +|++++|+|+||+|||||+++|+| +++|++|+|.++|.++.....
T Consensus 3 ~~~l~~~~~~~-~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G------------~~~p~~G~v~i~g~~~~~~~~- 68 (235)
T cd03299 3 VENLSKDWKEF-KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAG------------FIKPDSGKILLNGKDITNLPP- 68 (235)
T ss_pred eEeEEEEeCCc-eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhC------------CcCCCceEEEECCEEcCcCCh-
Confidence 45566677654 799999998 999999999999999999999999 889999999999998765432
Q ss_pred CCCcceeeEEEEEEEccCCC----eEEeCcccCCccccccCHh----HHhhhh---------HHHHHhcCcccccccccc
Q 020346 216 SGRGKHTTRHVSLLPLSGGG----YLADTPGFNQPSLLKVTKQ----SLAQTF---------PEIKEMLKANEPAKCSFN 278 (327)
Q Consensus 216 ~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~~l~~~~~~----~l~~~~---------~~~~~~LSgGq~q~~~~~ 278 (327)
..+.+++++|++.. .+.|+..+.... ...... ...... ......||+||+||+.++
T Consensus 69 ------~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la 141 (235)
T cd03299 69 ------EKRDISYVPQNYALFPHMTVYKNIAYGLKK-RKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIA 141 (235)
T ss_pred ------hHcCEEEEeecCccCCCccHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHH
Confidence 23578999987422 222222211000 000000 001101 111124999999999999
Q ss_pred ccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 279 NCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 279 ~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
+++ +..|.++++|+| ...+.+.+++.++..
T Consensus 142 ral-~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~ 177 (235)
T cd03299 142 RAL-VVNPKILLLDEPFSALDVRTKEKLREELKKIRK 177 (235)
T ss_pred HHH-HcCCCEEEECCCcccCCHHHHHHHHHHHHHHHH
Confidence 999 999999999954 455666666666543
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.8e-18 Score=174.74 Aligned_cols=156 Identities=8% Similarity=0.120 Sum_probs=106.4
Q ss_pred CceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccc--cccceeecceeecccc
Q 020346 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEP--ILGSKWFEDQRVGEVS 213 (327)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p--~~G~i~~~g~~v~~~s 213 (327)
++.+.++|++..+++++++.+ +|++++|+|+||||||||+++|+| +++| ++|+|.++|+++...+
T Consensus 4 i~~l~~~~~~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G------------~~~~~~~~G~i~~~g~~~~~~~ 71 (500)
T TIGR02633 4 MKGIVKTFGGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSG------------VYPHGTWDGEIYWSGSPLKASN 71 (500)
T ss_pred EEeEEEEeCCeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhC------------CCCCCCCCeEEEECCEECCCCC
Confidence 456777887777999999998 999999999999999999999999 7776 7999999999876533
Q ss_pred ccCCCcceeeEEEEEEEccCCC----eEEeCcccCCccc--c-ccCH-------hH------Hhhhh-HHHHHhcCcccc
Q 020346 214 TKSGRGKHTTRHVSLLPLSGGG----YLADTPGFNQPSL--L-KVTK-------QS------LAQTF-PEIKEMLKANEP 272 (327)
Q Consensus 214 ~~~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~~l--~-~~~~-------~~------l~~~~-~~~~~~LSgGq~ 272 (327)
... ..+..++|+||.+.. ++.|+..+..... . .... .+ +.... ......|||||+
T Consensus 72 ~~~----~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~ 147 (500)
T TIGR02633 72 IRD----TERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQ 147 (500)
T ss_pred HHH----HHhCCEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHH
Confidence 211 023568999997532 2223222211000 0 0000 00 10010 111345999999
Q ss_pred ccccccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 273 AKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 273 q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
||+.|++++ +.+|.++|+|+| ...+.+.++++++..
T Consensus 148 qrv~iA~al-~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~ 189 (500)
T TIGR02633 148 QLVEIAKAL-NKQARLLILDEPSSSLTEKETEILLDIIRDLKA 189 (500)
T ss_pred HHHHHHHHH-hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Confidence 999999999 899999999965 455666667776644
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.8e-18 Score=160.52 Aligned_cols=158 Identities=13% Similarity=0.232 Sum_probs=105.1
Q ss_pred cCCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCccccccccc--c---cccceeeccee
Q 020346 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFE--P---ILGSKWFEDQR 208 (327)
Q Consensus 135 ~~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~--p---~~G~i~~~g~~ 208 (327)
+.++.+.++|++..+++++++.+ +|++++|+|+||+|||||+++|+| +++ | ++|+|+++|.+
T Consensus 13 l~i~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G------------~~~~~p~~~~~G~i~~~g~~ 80 (259)
T PRK14274 13 YQINGMNLWYGQHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNL------------MIQMVPNVKLTGEMNYNGSN 80 (259)
T ss_pred EEEeeEEEEECCeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHh------------hccCCCCCCCceEEEECCEE
Confidence 45677888887778999999998 999999999999999999999999 665 3 69999999998
Q ss_pred eccccccCCCcceeeEEEEEEEccCCCe---EEeCcccCCccccccCH----hHH---hhh---h-------HHHHHhcC
Q 020346 209 VGEVSTKSGRGKHTTRHVSLLPLSGGGY---LADTPGFNQPSLLKVTK----QSL---AQT---F-------PEIKEMLK 268 (327)
Q Consensus 209 v~~~s~~~~~g~~tt~~i~~v~q~~~~~---i~Dtpg~~~~~l~~~~~----~~l---~~~---~-------~~~~~~LS 268 (327)
+...+.. ....++.++|+||++..+ +.|+..+.......... ... ... . ......||
T Consensus 81 ~~~~~~~---~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS 157 (259)
T PRK14274 81 ILKGKVD---LVELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLS 157 (259)
T ss_pred ccccccC---HHHHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCC
Confidence 7532111 011456799999975322 11221111000000000 000 000 0 11122399
Q ss_pred ccccccccccccccccCCceEEcccH------HHHHHHHHHHHHHH
Q 020346 269 ANEPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIR 308 (327)
Q Consensus 269 gGq~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~ 308 (327)
+||+||+.+++++ +.+|.++++|+| .....+.++++++.
T Consensus 158 ~Gq~qrv~laral-~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~ 202 (259)
T PRK14274 158 GGQQQRLCIARAL-ATNPDVLLMDEPTSALDPVSTRKIEELILKLK 202 (259)
T ss_pred HHHHHHHHHHHHH-hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHh
Confidence 9999999999999 999999999965 34455556666664
|
|
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.2e-18 Score=165.76 Aligned_cols=157 Identities=15% Similarity=0.192 Sum_probs=106.2
Q ss_pred cCCceeeccCc--chhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCccccccccc-----ccccceeecc
Q 020346 135 WGYEPLFCSVE--SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFE-----PILGSKWFED 206 (327)
Q Consensus 135 ~~~~~~~~s~~--~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~-----p~~G~i~~~g 206 (327)
+.++.+.++|. ...+++++++.+ +|++++|+|+||||||||+++|+| +.+ |++|+|+|+|
T Consensus 81 i~~~nls~~y~~~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g------------~~~~~~~~p~~G~I~idG 148 (329)
T PRK14257 81 FEIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQ------------LNDLIEGTSHEGEIYFLG 148 (329)
T ss_pred EEEEeeEEEecCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhc------------cccccCCCCCceEEEECC
Confidence 45778888885 346899999998 999999999999999999999999 554 6799999999
Q ss_pred eeeccccccCCCcceeeEEEEEEEccCC---CeEEeCcccCCccccccCHhH---------Hhh---------hhHHHHH
Q 020346 207 QRVGEVSTKSGRGKHTTRHVSLLPLSGG---GYLADTPGFNQPSLLKVTKQS---------LAQ---------TFPEIKE 265 (327)
Q Consensus 207 ~~v~~~s~~~~~g~~tt~~i~~v~q~~~---~~i~Dtpg~~~~~l~~~~~~~---------l~~---------~~~~~~~ 265 (327)
.++...+... ...++.++++||.+. +++.|+..+... .......+ +.. ...+-..
T Consensus 149 ~~i~~~~~~~---~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~-~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~ 224 (329)
T PRK14257 149 TNTRSKKISS---LELRTRIGMVFQKPTPFEMSIFDNVAYGPR-NNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGN 224 (329)
T ss_pred EEccccccch---HhhhccEEEEecCCccCCCcHHHHHHhHHH-hcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcc
Confidence 9886321100 014567999999752 233333332110 00000000 000 0011123
Q ss_pred hcCccccccccccccccccCCceEEcccH------HHHHHHHHHHHHHH
Q 020346 266 MLKANEPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIR 308 (327)
Q Consensus 266 ~LSgGq~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~ 308 (327)
.|||||+||+.+++|+ +.+|.++|+|+| ...+.+.+++.++.
T Consensus 225 ~LSgGqkqRl~LARAl-~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~ 272 (329)
T PRK14257 225 ALSGGQQQRLCIARAI-ALEPEVLLMDEPTSALDPIATAKIEELILELK 272 (329)
T ss_pred cCCHHHHHHHHHHHHH-HhCCCEEEEeCCcccCCHHHHHHHHHHHHHHh
Confidence 4999999999999999 999999999965 34444666666554
|
|
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.6e-18 Score=159.19 Aligned_cols=158 Identities=13% Similarity=0.218 Sum_probs=104.9
Q ss_pred cCCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCccccccccc-----ccccceeeccee
Q 020346 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFE-----PILGSKWFEDQR 208 (327)
Q Consensus 135 ~~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~-----p~~G~i~~~g~~ 208 (327)
+.++.+.++|++..+++++++.+ +|++++|+|+||+|||||+++|+| ++. |++|+|+++|.+
T Consensus 11 l~i~~v~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G------------l~~~~~~~~~~G~i~~~g~~ 78 (264)
T PRK14243 11 LRTENLNVYYGSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNR------------LNDLIPGFRVEGKVTFHGKN 78 (264)
T ss_pred EEEeeeEEEECCEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHh------------hhcccCCCCCceEEEECCEE
Confidence 34567778887778999999998 999999999999999999999999 654 489999999988
Q ss_pred eccccccCCCcceeeEEEEEEEccCCCe---EEeCcccCCc--cccccCHhHHh---hh----------hHHHHHhcCcc
Q 020346 209 VGEVSTKSGRGKHTTRHVSLLPLSGGGY---LADTPGFNQP--SLLKVTKQSLA---QT----------FPEIKEMLKAN 270 (327)
Q Consensus 209 v~~~s~~~~~g~~tt~~i~~v~q~~~~~---i~Dtpg~~~~--~l~~~~~~~l~---~~----------~~~~~~~LSgG 270 (327)
+...+... ...++.+++++|.+..+ +.++..+... ........... .. .......||||
T Consensus 79 i~~~~~~~---~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG 155 (264)
T PRK14243 79 LYAPDVDP---VEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDKLKQSGLSLSGG 155 (264)
T ss_pred ccccccCh---HHHhhhEEEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHH
Confidence 74321110 11456799999975321 1122111100 00000000000 00 01111239999
Q ss_pred ccccccccccccccCCceEEcccH------HHHHHHHHHHHHHH
Q 020346 271 EPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIR 308 (327)
Q Consensus 271 q~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~ 308 (327)
|+||+.|++++ +.+|+++++|+| ...+.+.+++.++.
T Consensus 156 q~qrv~laral-~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~ 198 (264)
T PRK14243 156 QQQRLCIARAI-AVQPEVILMDEPCSALDPISTLRIEELMHELK 198 (264)
T ss_pred HHHHHHHHHHH-hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh
Confidence 99999999999 899999999965 45556666776664
|
|
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=2e-18 Score=161.59 Aligned_cols=157 Identities=18% Similarity=0.273 Sum_probs=105.9
Q ss_pred cCCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCccccccccc-----ccccceeeccee
Q 020346 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFE-----PILGSKWFEDQR 208 (327)
Q Consensus 135 ~~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~-----p~~G~i~~~g~~ 208 (327)
+.++.+.++|++..+++++++.+ +|++++|+|+||+|||||+++|+| +++ |++|+|.++|.+
T Consensus 25 l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~G------------l~~~~~~~~~~G~i~~~g~~ 92 (271)
T PRK14238 25 FDTQNLNLWYGEDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNR------------MVELVPSVKTTGKILYRDQN 92 (271)
T ss_pred EEEeeeEEEECCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHh------------hccCCCCCCCceeEEECCEE
Confidence 45677888887778999999998 999999999999999999999999 665 699999999988
Q ss_pred eccccccCCCcceeeEEEEEEEccCCCe---EEeCcccCCcccccc-CH----hHHhh-------------hhHHHHHhc
Q 020346 209 VGEVSTKSGRGKHTTRHVSLLPLSGGGY---LADTPGFNQPSLLKV-TK----QSLAQ-------------TFPEIKEML 267 (327)
Q Consensus 209 v~~~s~~~~~g~~tt~~i~~v~q~~~~~---i~Dtpg~~~~~l~~~-~~----~~l~~-------------~~~~~~~~L 267 (327)
+...+.. .....+.++|+||++..+ +.++..+... .... .. ..+.. ........|
T Consensus 93 ~~~~~~~---~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~L 168 (271)
T PRK14238 93 IFDKSYS---VEELRTNVGMVFQKPNPFPKSIYDNVTYGPK-IHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGL 168 (271)
T ss_pred ccccccc---HHHHhhhEEEEecCCccccccHHHHHHHHHH-hcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccC
Confidence 7532110 011456799999975432 2222211000 0000 00 00010 001112349
Q ss_pred CccccccccccccccccCCceEEcccH------HHHHHHHHHHHHHH
Q 020346 268 KANEPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIR 308 (327)
Q Consensus 268 SgGq~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~ 308 (327)
||||+||+.+++++ +.+|+++++|+| .....+.+++.++.
T Consensus 169 SgGe~qrv~laraL-~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~ 214 (271)
T PRK14238 169 SGGQQQRLCIARCL-AIEPDVILMDEPTSALDPISTLKVEELVQELK 214 (271)
T ss_pred CHHHHHHHHHHHHH-HcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHH
Confidence 99999999999999 899999999955 34455556666653
|
|
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=2e-18 Score=162.88 Aligned_cols=158 Identities=13% Similarity=0.176 Sum_probs=105.1
Q ss_pred cCCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCccccccccc-----ccccceeeccee
Q 020346 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFE-----PILGSKWFEDQR 208 (327)
Q Consensus 135 ~~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~-----p~~G~i~~~g~~ 208 (327)
+.++.+.++|.+..+++++++.+ +|++++|+|+||+|||||+++|+| +.+ |++|+|+++|.+
T Consensus 40 l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~G------------l~~~~p~~~~~G~I~~~g~~ 107 (286)
T PRK14275 40 VVAKNFSIYYGEFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINR------------MNDLIPSCHTTGALMFDGED 107 (286)
T ss_pred EEEeeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhc------------ccccCCCCCCceEEEECCEE
Confidence 34567777887667899999998 999999999999999999999999 543 599999999988
Q ss_pred eccccccCCCcceeeEEEEEEEccCCCe---EEeCcccCCc--cccc-cC-HhHHhh-------------hhHHHHHhcC
Q 020346 209 VGEVSTKSGRGKHTTRHVSLLPLSGGGY---LADTPGFNQP--SLLK-VT-KQSLAQ-------------TFPEIKEMLK 268 (327)
Q Consensus 209 v~~~s~~~~~g~~tt~~i~~v~q~~~~~---i~Dtpg~~~~--~l~~-~~-~~~l~~-------------~~~~~~~~LS 268 (327)
+....... ...++.++|++|++..+ +.|+..+... .... .. ...+.. ........||
T Consensus 108 i~~~~~~~---~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS 184 (286)
T PRK14275 108 IYGKFTDE---VLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLS 184 (286)
T ss_pred hhhcccch---HHhhhcEEEECCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCC
Confidence 75421110 01456799999975321 2222211100 0000 00 000000 0011123499
Q ss_pred ccccccccccccccccCCceEEcccH------HHHHHHHHHHHHHH
Q 020346 269 ANEPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIR 308 (327)
Q Consensus 269 gGq~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~ 308 (327)
|||+||+.+++++ +.+|.++|+|+| ...+.+.++++++.
T Consensus 185 gGq~qrv~LAraL-~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~ 229 (286)
T PRK14275 185 GGQQQRLCVARTL-AVEPEILLLDEPTSALDPKATAKIEDLIQELR 229 (286)
T ss_pred HHHHHHHHHHHHH-hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh
Confidence 9999999999999 999999999955 45555666666653
|
|
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.1e-18 Score=158.00 Aligned_cols=157 Identities=15% Similarity=0.210 Sum_probs=104.8
Q ss_pred CCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccc--cc---cccceeecceee
Q 020346 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWF--EP---ILGSKWFEDQRV 209 (327)
Q Consensus 136 ~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~--~p---~~G~i~~~g~~v 209 (327)
.++.+.++|.+..+++++++.+ +|++++|+|+||||||||+++|+| +. .| ++|+|+++|.++
T Consensus 7 ~~~~l~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G------------l~~~~p~~~~~G~i~~~g~~~ 74 (252)
T PRK14239 7 QVSDLSVYYNKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINR------------MNDLNPEVTITGSIVYNGHNI 74 (252)
T ss_pred EEEeeEEEECCeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhc------------ccccCCCCCccceEEECCEEC
Confidence 4567788887778999999998 999999999999999999999999 53 46 599999999887
Q ss_pred ccccccCCCcceeeEEEEEEEccCCCe---EEeCcccCC--cccc-ccCH-hH---Hhhh----------hHHHHHhcCc
Q 020346 210 GEVSTKSGRGKHTTRHVSLLPLSGGGY---LADTPGFNQ--PSLL-KVTK-QS---LAQT----------FPEIKEMLKA 269 (327)
Q Consensus 210 ~~~s~~~~~g~~tt~~i~~v~q~~~~~---i~Dtpg~~~--~~l~-~~~~-~~---l~~~----------~~~~~~~LSg 269 (327)
....... ...++.++++||.+..+ +.|+..+.. .... .... .. +.+. .......||+
T Consensus 75 ~~~~~~~---~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~ 151 (252)
T PRK14239 75 YSPRTDT---VDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSG 151 (252)
T ss_pred cCcccch---HhhhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCH
Confidence 5321110 11456799999975322 222211100 0000 0000 00 0000 0111234999
Q ss_pred cccccccccccccccCCceEEcccH------HHHHHHHHHHHHHH
Q 020346 270 NEPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIR 308 (327)
Q Consensus 270 Gq~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~ 308 (327)
||+||+++++++ +.+|.++|+|+| .....+.++++++.
T Consensus 152 G~~qrv~laral-~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~ 195 (252)
T PRK14239 152 GQQQRVCIARVL-ATSPKIILLDEPTSALDPISAGKIEETLLGLK 195 (252)
T ss_pred HHHHHHHHHHHH-hcCCCEEEEcCCccccCHHHHHHHHHHHHHHh
Confidence 999999999999 899999999965 45555666676663
|
|
| >PRK14254 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=5e-18 Score=160.14 Aligned_cols=157 Identities=13% Similarity=0.215 Sum_probs=105.9
Q ss_pred CCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCccccccccc-----ccccceeecceee
Q 020346 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFE-----PILGSKWFEDQRV 209 (327)
Q Consensus 136 ~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~-----p~~G~i~~~g~~v 209 (327)
.++.+.++|.+..+++++++.+ +|++++|+|+||||||||+++|+| +++ |++|+|+++|.++
T Consensus 41 ~i~~l~~~~~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~G------------l~~~~~~~p~~G~I~i~G~~i 108 (285)
T PRK14254 41 EARDLNVFYGDEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINR------------MNDLIDAARVEGELTFRGKNV 108 (285)
T ss_pred EEEEEEEEECCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhc------------cCCcccCCCCceEEEECCEEc
Confidence 4567777787777999999998 999999999999999999999999 665 6999999999987
Q ss_pred ccccccCCCcceeeEEEEEEEccCCCe---EEeCcccCCc--ccc-ccC--HhHHhhhh----------HHHHHhcCccc
Q 020346 210 GEVSTKSGRGKHTTRHVSLLPLSGGGY---LADTPGFNQP--SLL-KVT--KQSLAQTF----------PEIKEMLKANE 271 (327)
Q Consensus 210 ~~~s~~~~~g~~tt~~i~~v~q~~~~~---i~Dtpg~~~~--~l~-~~~--~~~l~~~~----------~~~~~~LSgGq 271 (327)
...+... ...++.++|++|++..+ +.|+..+... ... ... ...+...+ ..-...|||||
T Consensus 109 ~~~~~~~---~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe 185 (285)
T PRK14254 109 YDADVDP---VALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQ 185 (285)
T ss_pred cccccch---HhhhccEEEEecCCccCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHH
Confidence 5432111 11456799999975321 1222111000 000 000 00111111 11123499999
Q ss_pred cccccccccccccCCceEEcccH------HHHHHHHHHHHHHH
Q 020346 272 PAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIR 308 (327)
Q Consensus 272 ~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~ 308 (327)
+||+.+++++ +.+|.++|+|+| ...+.+.++++++.
T Consensus 186 ~qrv~LAraL-~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~ 227 (285)
T PRK14254 186 QQRLCIARAI-APDPEVILMDEPASALDPVATSKIEDLIEELA 227 (285)
T ss_pred HHHHHHHHHH-HcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh
Confidence 9999999999 999999999955 45566666776664
|
|
| >PRK14263 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=4.7e-18 Score=158.27 Aligned_cols=156 Identities=13% Similarity=0.128 Sum_probs=105.6
Q ss_pred CceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccc-----cccceeecceeec
Q 020346 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEP-----ILGSKWFEDQRVG 210 (327)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p-----~~G~i~~~g~~v~ 210 (327)
.+...+.|++..+++++++.+ +|++++|+|+||+|||||+++|+| +++| ++|+|+++|.++.
T Consensus 11 ~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G------------l~~p~~~~~~~G~i~~~g~~i~ 78 (261)
T PRK14263 11 CKLDKIFYGNFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNR------------MNDLVKGFRFEGHVHFLGQDVY 78 (261)
T ss_pred EEeEEEEeCCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHc------------ccccccCCCCceEEEECCEecc
Confidence 456677777778999999998 999999999999999999999999 7765 7999999999875
Q ss_pred cccccCCCcceeeEEEEEEEccCCC---eEEeCcccCCcc--ccccCHhHHhhhh------H-------HHHHhcCcccc
Q 020346 211 EVSTKSGRGKHTTRHVSLLPLSGGG---YLADTPGFNQPS--LLKVTKQSLAQTF------P-------EIKEMLKANEP 272 (327)
Q Consensus 211 ~~s~~~~~g~~tt~~i~~v~q~~~~---~i~Dtpg~~~~~--l~~~~~~~l~~~~------~-------~~~~~LSgGq~ 272 (327)
..+... ...++.+++++|++.. ++.|+..+.... ............. + .....||+||+
T Consensus 79 ~~~~~~---~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~ 155 (261)
T PRK14263 79 GKGVDP---VVVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQ 155 (261)
T ss_pred ccccch---HhhhhceEEEecCCccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHH
Confidence 422111 1145679999997532 222222111000 0000000111110 1 11124999999
Q ss_pred ccccccccccccCCceEEcccH------HHHHHHHHHHHHHH
Q 020346 273 AKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIR 308 (327)
Q Consensus 273 q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~ 308 (327)
||+.+++++ +.+|.++++|+| ...+.+.++++++.
T Consensus 156 qrv~laral-~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~ 196 (261)
T PRK14263 156 QRLCIARAI-ATEPEVLLLDEPCSALDPIATRRVEELMVELK 196 (261)
T ss_pred HHHHHHHHH-HcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh
Confidence 999999999 899999999955 46666667777663
|
|
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=2e-18 Score=159.24 Aligned_cols=160 Identities=9% Similarity=0.160 Sum_probs=104.9
Q ss_pred CCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccc--cccceeecceeeccc
Q 020346 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEP--ILGSKWFEDQRVGEV 212 (327)
Q Consensus 136 ~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p--~~G~i~~~g~~v~~~ 212 (327)
.++.+.+.|++..+++++++.+ +|++++|+|+||+|||||+++|+|... +.+| ++|+|.++|.++...
T Consensus 5 ~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~---------~~~~~~~~G~i~~~g~~~~~~ 75 (250)
T PRK14245 5 DARDVNFWYGDFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMND---------LIPATRLEGEIRIDGRNIYDK 75 (250)
T ss_pred EEEEEEEEECCEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhc---------ccCCCCCceEEEECCEecccc
Confidence 3566777777777899999998 999999999999999999999999210 2454 599999999987643
Q ss_pred cccCCCcceeeEEEEEEEccCCC---eEEeCcccCC--ccc--cc-c--CHhHHhhh----------hHHHHHhcCcccc
Q 020346 213 STKSGRGKHTTRHVSLLPLSGGG---YLADTPGFNQ--PSL--LK-V--TKQSLAQT----------FPEIKEMLKANEP 272 (327)
Q Consensus 213 s~~~~~g~~tt~~i~~v~q~~~~---~i~Dtpg~~~--~~l--~~-~--~~~~l~~~----------~~~~~~~LSgGq~ 272 (327)
+... ...++.++|+||.+.. ++.|+..+.. ... .. . ....+... .......|||||+
T Consensus 76 ~~~~---~~~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~ 152 (250)
T PRK14245 76 GVQV---DELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQ 152 (250)
T ss_pred cccH---HHHhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHH
Confidence 2110 1145679999997532 1222221110 000 00 0 00011110 1111234999999
Q ss_pred ccccccccccccCCceEEcccH------HHHHHHHHHHHHHH
Q 020346 273 AKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIR 308 (327)
Q Consensus 273 q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~ 308 (327)
||+.+++++ +.+|+++|+|+| ...+.+.++++++.
T Consensus 153 qrv~laral-~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~ 193 (250)
T PRK14245 153 QRLCIARAM-AVSPSVLLMDEPASALDPISTAKVEELIHELK 193 (250)
T ss_pred HHHHHHHHH-hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh
Confidence 999999999 999999999965 45556666676663
|
|
| >COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.72 E-value=4.9e-18 Score=153.02 Aligned_cols=156 Identities=21% Similarity=0.266 Sum_probs=113.3
Q ss_pred CCceeeccCcch-hhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccc
Q 020346 136 GYEPLFCSVESK-LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (327)
Q Consensus 136 ~~~~~~~s~~~~-~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s 213 (327)
.++.++++..++ ++|+++++.+ +|++.+|+||||||||||.+.|+|.. -|++|+|+|.|+|+++..++
T Consensus 5 ~I~dLhv~v~~~keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p----------~Y~Vt~G~I~~~GedI~~l~ 74 (251)
T COG0396 5 EIKDLHVEVEGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHP----------KYEVTEGEILFDGEDILELS 74 (251)
T ss_pred EEeeeEEEecCchhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCC----------CceEecceEEECCcccccCC
Confidence 356777888774 9999999998 89999999999999999999999977 79999999999999999998
Q ss_pred ccCCCcceeeEEEEEEEccCCCeEEeCcccCCccc-----cc------c--C-------HhHHhhhhHHH-----HHhcC
Q 020346 214 TKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSL-----LK------V--T-------KQSLAQTFPEI-----KEMLK 268 (327)
Q Consensus 214 ~~~~~g~~tt~~i~~v~q~~~~~i~Dtpg~~~~~l-----~~------~--~-------~~~l~~~~~~~-----~~~LS 268 (327)
.... .+..+.+-+|.| .+-||+....+ +. + . ..+.....+++ ..-+|
T Consensus 75 ~~ER----Ar~GifLafQ~P----~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFS 146 (251)
T COG0396 75 PDER----ARAGIFLAFQYP----VEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFS 146 (251)
T ss_pred HhHH----HhcCCEEeecCC----ccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcC
Confidence 8765 666777777764 13344332110 00 0 0 00001111112 12279
Q ss_pred ccccccccccccccccCCceEEcccH------HHHHHHHHHHHHHHHh
Q 020346 269 ANEPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRIR 310 (327)
Q Consensus 269 gGq~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~~ 310 (327)
|||++|..+.+.+ +-+|+.+|+|++ ...+..-+.++++++.
T Consensus 147 GGEkKR~EilQ~~-~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~ 193 (251)
T COG0396 147 GGEKKRNEILQLL-LLEPKLAILDEPDSGLDIDALKIVAEGINALREE 193 (251)
T ss_pred cchHHHHHHHHHH-hcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcC
Confidence 9999999999888 889999999855 4666666666666554
|
|
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.4e-18 Score=157.87 Aligned_cols=155 Identities=14% Similarity=0.194 Sum_probs=104.5
Q ss_pred CceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccc-----cccceeecceeec
Q 020346 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEP-----ILGSKWFEDQRVG 210 (327)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p-----~~G~i~~~g~~v~ 210 (327)
++.+.++|.+..+++++++.+ +|++++|+|+||+|||||+++|+| +.+| ++|+|.++|.++.
T Consensus 7 ~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G------------~~~~~~~~~~~G~i~~~g~~i~ 74 (251)
T PRK14270 7 SKNLNLWYGEKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNR------------MNDLISNVKIEGEVLLDGKNIY 74 (251)
T ss_pred EEEeEEEECCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHh------------ccCcccCCCCccEEEECCEecc
Confidence 566777787777999999998 999999999999999999999999 6654 8999999999875
Q ss_pred cccccCCCcceeeEEEEEEEccCCC---eEEeCcccCCcccccc-CH-------hHHhhhh----------HHHHHhcCc
Q 020346 211 EVSTKSGRGKHTTRHVSLLPLSGGG---YLADTPGFNQPSLLKV-TK-------QSLAQTF----------PEIKEMLKA 269 (327)
Q Consensus 211 ~~s~~~~~g~~tt~~i~~v~q~~~~---~i~Dtpg~~~~~l~~~-~~-------~~l~~~~----------~~~~~~LSg 269 (327)
..+... ...++.++++||++.. ++.++..+... .... .. ..+.+.+ ......||+
T Consensus 75 ~~~~~~---~~~~~~i~~~~q~~~~~~~tv~enl~~~~~-~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~ 150 (251)
T PRK14270 75 DKDVDV---VELRKRVGMVFQKPNPFPMSIYDNVAYGPR-IHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSG 150 (251)
T ss_pred cccccH---HHHHhheEEEecCCCcCCCcHHHHHHhHHH-hcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCH
Confidence 432110 0135679999997532 22222221100 0000 00 0111111 111234999
Q ss_pred cccccccccccccccCCceEEcccH------HHHHHHHHHHHHHH
Q 020346 270 NEPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIR 308 (327)
Q Consensus 270 Gq~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~ 308 (327)
||+||+.+++++ +.+|.++++|+| .....+.++++++.
T Consensus 151 G~~qrv~laral-~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~ 194 (251)
T PRK14270 151 GQQQRLCIARTI-AVKPDVILMDEPTSALDPISTLKIEDLMVELK 194 (251)
T ss_pred HHHHHHHHHHHH-hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence 999999999999 899999999965 34455556666654
|
|
| >TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.9e-18 Score=155.47 Aligned_cols=159 Identities=13% Similarity=0.133 Sum_probs=100.3
Q ss_pred CceeeccCcc-------hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecc--
Q 020346 137 YEPLFCSVES-------KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFED-- 206 (327)
Q Consensus 137 ~~~~~~s~~~-------~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g-- 206 (327)
++.+.++|+. ..+++++++.+ +|++++|+|+||+|||||+++|+| +++|++|+|++++
T Consensus 4 ~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G------------~~~~~~G~i~~~~~g 71 (224)
T TIGR02324 4 VEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYA------------NYLPDSGRILVRHEG 71 (224)
T ss_pred EEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhC------------CCCCCCCeEEEecCC
Confidence 4566677742 36899999998 999999999999999999999999 8999999999984
Q ss_pred e--eeccccccCCCcceeeEEEEEEEccCCCe----EEeCcccC--Ccccc--cc--CHhHHhhhh---H----HHHHhc
Q 020346 207 Q--RVGEVSTKSGRGKHTTRHVSLLPLSGGGY----LADTPGFN--QPSLL--KV--TKQSLAQTF---P----EIKEML 267 (327)
Q Consensus 207 ~--~v~~~s~~~~~g~~tt~~i~~v~q~~~~~----i~Dtpg~~--~~~l~--~~--~~~~l~~~~---~----~~~~~L 267 (327)
. ++...+.... .....+.+++++|++..+ +.|+..+. ..... .. ...++...+ + .....|
T Consensus 72 ~~~~~~~~~~~~~-~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~L 150 (224)
T TIGR02324 72 AWVDLAQASPREV-LEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATF 150 (224)
T ss_pred CccchhhcCHHHH-HHHHhcceEEEecccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccC
Confidence 2 3332221100 000134689999975321 11111110 00000 00 000111100 0 112349
Q ss_pred CccccccccccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 268 KANEPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 268 SgGq~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
|+||+||+.+++++ +.+|+++++|+| .-.+.+.++++++..
T Consensus 151 S~G~~qrl~laral-~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~ 197 (224)
T TIGR02324 151 SGGEQQRVNIARGF-IADYPILLLDEPTASLDAANRQVVVELIAEAKA 197 (224)
T ss_pred CHHHHHHHHHHHHH-hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh
Confidence 99999999999999 899999999965 345555566666643
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. |
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.9e-18 Score=158.00 Aligned_cols=154 Identities=15% Similarity=0.205 Sum_probs=104.4
Q ss_pred CCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccc-----cccceeecceee
Q 020346 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEP-----ILGSKWFEDQRV 209 (327)
Q Consensus 136 ~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p-----~~G~i~~~g~~v 209 (327)
.++.+.++|.+..+++++++.+ +|++++|+|+||+|||||+++|+| +++| ++|+|.++|.++
T Consensus 5 ~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G------------l~~~~~~~~~~G~v~~~g~~~ 72 (249)
T PRK14253 5 NIENLDLFYGENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNR------------MNDLIEGVKITGKLTMDGEDI 72 (249)
T ss_pred EEeccEEEECCeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHh------------hcccccCCCCceEEEECCEEc
Confidence 3566777787778999999998 999999999999999999999999 6665 699999999887
Q ss_pred cc-ccccCCCcceeeEEEEEEEccCCCe---EEeCcccCCccccccC-----HhH---Hhhh----------hHHHHHhc
Q 020346 210 GE-VSTKSGRGKHTTRHVSLLPLSGGGY---LADTPGFNQPSLLKVT-----KQS---LAQT----------FPEIKEML 267 (327)
Q Consensus 210 ~~-~s~~~~~g~~tt~~i~~v~q~~~~~---i~Dtpg~~~~~l~~~~-----~~~---l~~~----------~~~~~~~L 267 (327)
.. .+... .++.++|++|.+..+ +.|+..+... ..... ... ..+. .......|
T Consensus 73 ~~~~~~~~-----~~~~i~~~~q~~~~~~~tv~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~L 146 (249)
T PRK14253 73 YGNIDVAD-----LRIKVGMVFQKPNPFPMSIYENVAYGLR-AQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGL 146 (249)
T ss_pred ccccchHH-----HHhheeEEecCCCcCcccHHHHHHhHHH-hcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccC
Confidence 42 11111 456799999975322 1222211100 00000 000 0000 00111249
Q ss_pred CccccccccccccccccCCceEEcccH------HHHHHHHHHHHHHH
Q 020346 268 KANEPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIR 308 (327)
Q Consensus 268 SgGq~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~ 308 (327)
|+||+||+.+++++ +.+|.++++|+| .......++++++.
T Consensus 147 S~G~~qrv~laral-~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~ 192 (249)
T PRK14253 147 SGGQQQRLCIARTI-AMEPDVILMDEPTSALDPIATHKIEELMEELK 192 (249)
T ss_pred CHHHHHHHHHHHHH-HcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh
Confidence 99999999999999 999999999965 45556666666664
|
|
| >PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=99.71 E-value=6.1e-20 Score=153.45 Aligned_cols=127 Identities=19% Similarity=0.295 Sum_probs=87.2
Q ss_pred HHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcceeeEEEEEE
Q 020346 151 DSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLL 229 (327)
Q Consensus 151 ~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~tt~~i~~v 229 (327)
+++++.+ +|++++|+|+||+|||||+++|+| .++|++|+|.+++.++....... .+..++++
T Consensus 2 ~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g------------~~~~~~G~i~~~~~~~~~~~~~~-----~~~~i~~~ 64 (137)
T PF00005_consen 2 KNVSLEIKPGEIVAIVGPNGSGKSTLLKALAG------------LLPPDSGSILINGKDISDIDIEE-----LRRRIGYV 64 (137)
T ss_dssp EEEEEEEETTSEEEEEESTTSSHHHHHHHHTT------------SSHESEEEEEETTEEGTTSHHHH-----HHHTEEEE
T ss_pred CceEEEEcCCCEEEEEccCCCccccceeeecc------------ccccccccccccccccccccccc-----cccccccc
Confidence 4566666 899999999999999999999999 88999999999999998743322 56779999
Q ss_pred EccCC----CeEEeCcc--cCCccccccCHhHHhhhhH-HHHHhcCccccccccccccccccCCceEEcccHH
Q 020346 230 PLSGG----GYLADTPG--FNQPSLLKVTKQSLAQTFP-EIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE 295 (327)
Q Consensus 230 ~q~~~----~~i~Dtpg--~~~~~l~~~~~~~l~~~~~-~~~~~LSgGq~q~~~~~~~~h~~ep~~~v~~~~~ 295 (327)
++... .++.++.. .....+..+.......... .-...||+||+||+.|++++ +.+|.++++|||.
T Consensus 65 ~~~~~~~~~~tv~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al-~~~~~llllDEPt 136 (137)
T PF00005_consen 65 PQDPQLFPGLTVRENESDERIEEVLKKLGLEDLLDRKIGQRASSLSGGEKQRLALARAL-LKNPKLLLLDEPT 136 (137)
T ss_dssp ESSHCHHTTSBHHHHHHHHHHHHHHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHH-HTTSSEEEEESTT
T ss_pred ccccccccccccccccccccccccccccccccccccccccccchhhHHHHHHHHHHHHH-HcCCCEEEEeCCC
Confidence 99631 11222200 0000011111111111100 00145999999999999998 9999999999873
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D .... |
| >COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.2e-18 Score=150.36 Aligned_cols=132 Identities=20% Similarity=0.266 Sum_probs=101.9
Q ss_pred cchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcceee
Q 020346 145 ESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTT 223 (327)
Q Consensus 145 ~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~tt 223 (327)
.+...++++|+.+ +|+.++|.||||||||||++.++. +..|++|+++|.|++++..+... .+
T Consensus 14 ~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~------------Lisp~~G~l~f~Ge~vs~~~pea-----~R 76 (223)
T COG4619 14 GDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVAS------------LISPTSGTLLFEGEDVSTLKPEA-----YR 76 (223)
T ss_pred CCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHh------------ccCCCCceEEEcCccccccChHH-----HH
Confidence 4567899999998 999999999999999999999999 99999999999999999887654 78
Q ss_pred EEEEEEEccC---CCeEEeCcccCCccccc----------cCHhHHhhhh-HHHHHhcCccccccccccccccccCCceE
Q 020346 224 RHVSLLPLSG---GGYLADTPGFNQPSLLK----------VTKQSLAQTF-PEIKEMLKANEPAKCSFNNCLHLGEPGCV 289 (327)
Q Consensus 224 ~~i~~v~q~~---~~~i~Dtpg~~~~~l~~----------~~~~~l~~~~-~~~~~~LSgGq~q~~~~~~~~h~~ep~~~ 289 (327)
..++|+.|.+ +.++.|+.-|....... +...++.+++ ..-...|||||+||.++.+-+ .--|+++
T Consensus 77 q~VsY~~Q~paLfg~tVeDNlifP~~~r~rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~L-q~~P~IL 155 (223)
T COG4619 77 QQVSYCAQTPALFGDTVEDNLIFPWQIRNRRPDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNL-QFMPKIL 155 (223)
T ss_pred HHHHHHHcCccccccchhhccccchHHhccCCChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHh-hcCCceE
Confidence 8899998876 55788887665322111 1111111111 111244999999999999988 7789999
Q ss_pred EcccH
Q 020346 290 VKGDW 294 (327)
Q Consensus 290 v~~~~ 294 (327)
++|++
T Consensus 156 LLDE~ 160 (223)
T COG4619 156 LLDEI 160 (223)
T ss_pred EecCc
Confidence 99854
|
|
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.6e-18 Score=157.50 Aligned_cols=157 Identities=17% Similarity=0.241 Sum_probs=104.3
Q ss_pred CCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCccccccccc-----ccccceeecceee
Q 020346 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFE-----PILGSKWFEDQRV 209 (327)
Q Consensus 136 ~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~-----p~~G~i~~~g~~v 209 (327)
.++.+.++|++..+++++++.+ +|++++|+|+||+|||||+++|+| +++ |++|+|.++|.++
T Consensus 5 ~~~~l~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~G------------l~~~~~~~~~~G~i~i~g~~~ 72 (250)
T PRK14262 5 EIENFSAYYGEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINR------------MNDHIPGFRVEGKIYFKGQDI 72 (250)
T ss_pred EEEeeEEEeCCceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhc------------cccCCCCCCcceEEEECCEEc
Confidence 3567777887778899999998 899999999999999999999999 666 3899999999887
Q ss_pred ccccccCCCcceeeEEEEEEEccCCC---eEEeCcccCCccccccC---H-hHHhh-------------hhHHHHHhcCc
Q 020346 210 GEVSTKSGRGKHTTRHVSLLPLSGGG---YLADTPGFNQPSLLKVT---K-QSLAQ-------------TFPEIKEMLKA 269 (327)
Q Consensus 210 ~~~s~~~~~g~~tt~~i~~v~q~~~~---~i~Dtpg~~~~~l~~~~---~-~~l~~-------------~~~~~~~~LSg 269 (327)
...+... ....+.+++++|.+.. .+.|+..+......... . ..+.. ........||+
T Consensus 73 ~~~~~~~---~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~ 149 (250)
T PRK14262 73 YDPQLDV---TEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSG 149 (250)
T ss_pred ccchhhH---HHhhhhEEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCH
Confidence 5421100 0135679999997532 22222211100000000 0 00000 01111234999
Q ss_pred cccccccccccccccCCceEEcccH------HHHHHHHHHHHHHH
Q 020346 270 NEPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIR 308 (327)
Q Consensus 270 Gq~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~ 308 (327)
||+||+.+++++ +.+|.++++|+| .....+.+++.++.
T Consensus 150 Gq~qr~~la~al-~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~ 193 (250)
T PRK14262 150 GQQQRLCIARAL-AVEPEVILLDEPTSALDPIATQRIEKLLEELS 193 (250)
T ss_pred HHHHHHHHHHHH-hCCCCEEEEeCCccccCHHHHHHHHHHHHHHh
Confidence 999999999999 999999999965 34445556666553
|
|
| >COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.71 E-value=7.9e-18 Score=155.44 Aligned_cols=142 Identities=18% Similarity=0.198 Sum_probs=103.7
Q ss_pred HHhhcCC-CEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcceeeEEEEEEEc
Q 020346 153 LLQRLRD-QTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPL 231 (327)
Q Consensus 153 l~~~l~g-~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~tt~~i~~v~q 231 (327)
+++.++| .++||-|+||+|||||||+|+| +.+|++|.|.+||.-..+.... -.-+--.++++|++|
T Consensus 17 a~~~~p~~GvTAlFG~SGsGKTslin~IaG------------L~rPdeG~I~lngr~L~Ds~k~-i~lp~~~RriGYVFQ 83 (352)
T COG4148 17 ANFTLPARGITALFGPSGSGKTSLINMIAG------------LTRPDEGRIELNGRVLVDAEKG-IFLPPEKRRIGYVFQ 83 (352)
T ss_pred EeccCCCCceEEEecCCCCChhhHHHHHhc------------cCCccccEEEECCEEeecccCC-cccChhhheeeeEee
Confidence 3444566 7999999999999999999999 9999999999999876554322 111224678999999
Q ss_pred cC----CCeEEeCcccCCcc---------ccccCHhHHhhhhHHHHHhcCccccccccccccccccCCceEEcccH----
Q 020346 232 SG----GGYLADTPGFNQPS---------LLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDW---- 294 (327)
Q Consensus 232 ~~----~~~i~Dtpg~~~~~---------l~~~~~~~l~~~~~~~~~~LSgGq~q~~~~~~~~h~~ep~~~v~~~~---- 294 (327)
+- .+++.-+..+.... ...+..+.+...+|.- |||||+||+++.+++ +..|+++++|+|
T Consensus 84 DARLFpH~tVrgNL~YG~~~~~~~~fd~iv~lLGI~hLL~R~P~~---LSGGEkQRVAIGRAL-Lt~P~LLLmDEPLaSL 159 (352)
T COG4148 84 DARLFPHYTVRGNLRYGMWKSMRAQFDQLVALLGIEHLLDRYPGT---LSGGEKQRVAIGRAL-LTAPELLLMDEPLASL 159 (352)
T ss_pred ccccccceEEecchhhhhcccchHhHHHHHHHhCcHHHHhhCCCc---cCcchhhHHHHHHHH-hcCCCeeeecCchhhc
Confidence 74 33444444433221 2233455666777766 999999999999999 999999999966
Q ss_pred --HHHHHHHHHHHHHHHhH
Q 020346 295 --ERYQYYFQLLDEIRIRE 311 (327)
Q Consensus 295 --~r~~~~~~ll~e~~~~~ 311 (327)
.|-....-.++.+.+.-
T Consensus 160 D~~RK~EilpylERL~~e~ 178 (352)
T COG4148 160 DLPRKREILPYLERLRDEI 178 (352)
T ss_pred ccchhhHHHHHHHHHHHhc
Confidence 36666666666665443
|
|
| >COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.4e-18 Score=167.83 Aligned_cols=135 Identities=21% Similarity=0.349 Sum_probs=107.0
Q ss_pred cCCceeeccCc-chhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccc
Q 020346 135 WGYEPLFCSVE-SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV 212 (327)
Q Consensus 135 ~~~~~~~~s~~-~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~ 212 (327)
..|.++.|.|. .+++|.++++.+ .|+++++||+||+||||++++|.+ +|++++|.|.++|+++..+
T Consensus 263 v~F~~V~F~y~~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfR------------FyD~~sG~I~id~qdir~v 330 (497)
T COG5265 263 VAFINVSFAYDPRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFR------------FYDVNSGSITIDGQDIRDV 330 (497)
T ss_pred EEEEEEEeeccccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHH------------HhCCcCceEEEcchhHHHh
Confidence 45778888885 578999999997 899999999999999999999999 9999999999999999988
Q ss_pred cccCCCcceeeEEEEEEEccCCCeEEeCcccCCccccccCH----------h---------HHhhhhHHHHH--------
Q 020346 213 STKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTK----------Q---------SLAQTFPEIKE-------- 265 (327)
Q Consensus 213 s~~~~~g~~tt~~i~~v~q~~~~~i~Dtpg~~~~~l~~~~~----------~---------~l~~~~~~~~~-------- 265 (327)
..+. .++.++++|| ||+.|.+....++.. . ..-..+|+-..
T Consensus 331 tq~s-----lR~aIg~VPQ-------DtvLFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~Vgergl 398 (497)
T COG5265 331 TQQS-----LRRAIGIVPQ-------DTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGL 398 (497)
T ss_pred HHHH-----HHHHhCcCcc-------cceehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchhee
Confidence 7665 7889999999 566555443222211 1 11122232211
Q ss_pred hcCccccccccccccccccCCceEEcccH
Q 020346 266 MLKANEPAKCSFNNCLHLGEPGCVVKGDW 294 (327)
Q Consensus 266 ~LSgGq~q~~~~~~~~h~~ep~~~v~~~~ 294 (327)
.|||||+||+++++.+ +.+|.+++.|+.
T Consensus 399 klSggekqrvaiar~i-lk~p~il~~dea 426 (497)
T COG5265 399 KLSGGEKQRVAIARTI-LKNPPILILDEA 426 (497)
T ss_pred eccCchHHHHHHHHHH-hcCCCEEEEehh
Confidence 2899999999999999 999999999854
|
|
| >cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=99.71 E-value=6.2e-18 Score=145.30 Aligned_cols=119 Identities=21% Similarity=0.396 Sum_probs=95.6
Q ss_pred ceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccC
Q 020346 138 EPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKS 216 (327)
Q Consensus 138 ~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~ 216 (327)
+.+.++|.+..+++++++.+ +|++++|+|+||+|||||+++|.| +++|++|+|+++|.++.......
T Consensus 3 ~~~~~~~~~~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g------------~~~~~~G~i~~~~~~~~~~~~~~ 70 (157)
T cd00267 3 ENLSFRYGGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAG------------LLKPTSGEILIDGKDIAKLPLEE 70 (157)
T ss_pred EEEEEEeCCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhC------------CCCCCccEEEECCEEcccCCHHH
Confidence 45566676667899999997 899999999999999999999999 88999999999998776543221
Q ss_pred CCcceeeEEEEEEEccCCCeEEeCcccCCccccccCHhHHhhhhHHHHHhcCccccccccccccccccCCceEEcccHH-
Q 020346 217 GRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE- 295 (327)
Q Consensus 217 ~~g~~tt~~i~~v~q~~~~~i~Dtpg~~~~~l~~~~~~~l~~~~~~~~~~LSgGq~q~~~~~~~~h~~ep~~~v~~~~~- 295 (327)
....+++++| ||+||+||+.+++++ +.+|.++++|+|.
T Consensus 71 -----~~~~i~~~~q-----------------------------------lS~G~~~r~~l~~~l-~~~~~i~ilDEp~~ 109 (157)
T cd00267 71 -----LRRRIGYVPQ-----------------------------------LSGGQRQRVALARAL-LLNPDLLLLDEPTS 109 (157)
T ss_pred -----HHhceEEEee-----------------------------------CCHHHHHHHHHHHHH-hcCCCEEEEeCCCc
Confidence 4456888876 999999999999998 8899999999653
Q ss_pred -----HHHHHHHHHHHHHH
Q 020346 296 -----RYQYYFQLLDEIRI 309 (327)
Q Consensus 296 -----r~~~~~~ll~e~~~ 309 (327)
....+.+++.++..
T Consensus 110 ~lD~~~~~~l~~~l~~~~~ 128 (157)
T cd00267 110 GLDPASRERLLELLRELAE 128 (157)
T ss_pred CCCHHHHHHHHHHHHHHHH
Confidence 44445555555543
|
The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.4e-18 Score=158.78 Aligned_cols=158 Identities=16% Similarity=0.213 Sum_probs=105.6
Q ss_pred cCCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccc-----cccceeeccee
Q 020346 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEP-----ILGSKWFEDQR 208 (327)
Q Consensus 135 ~~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p-----~~G~i~~~g~~ 208 (327)
+.++.+.++|++..+++++++.+ +|++++|+|+||+|||||+++|+| +++| ++|+|.++|.+
T Consensus 8 l~~~~l~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~G------------l~~~~~~~~~~G~i~~~g~~ 75 (259)
T PRK14260 8 IKVKDLSFYYNTSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNR------------ISELEGPVKVEGVVDFFGQN 75 (259)
T ss_pred EEEEEEEEEECCeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHh------------hcCcccCCccceEEEECCEe
Confidence 44677888887778999999998 999999999999999999999999 6664 58999999988
Q ss_pred eccccccCCCcceeeEEEEEEEccCCCe---EEeCcccCCcc---ccccCH----hHHhh----------hhHHHHHhcC
Q 020346 209 VGEVSTKSGRGKHTTRHVSLLPLSGGGY---LADTPGFNQPS---LLKVTK----QSLAQ----------TFPEIKEMLK 268 (327)
Q Consensus 209 v~~~s~~~~~g~~tt~~i~~v~q~~~~~---i~Dtpg~~~~~---l~~~~~----~~l~~----------~~~~~~~~LS 268 (327)
+...+... +.....+++++|++..+ +.++..+.... ...... .+... ........||
T Consensus 76 i~~~~~~~---~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS 152 (259)
T PRK14260 76 IYDPRINI---NRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLS 152 (259)
T ss_pred ccccccch---HhhhhheEEEecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCC
Confidence 75321110 11356799999975322 12221110000 000000 00000 0111123499
Q ss_pred ccccccccccccccccCCceEEcccH------HHHHHHHHHHHHHH
Q 020346 269 ANEPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIR 308 (327)
Q Consensus 269 gGq~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~ 308 (327)
+||+||+.+++++ +.+|+++++|+| ...+.+.+++.++.
T Consensus 153 ~G~~qrv~laral-~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~ 197 (259)
T PRK14260 153 GGQQQRLCIARAL-AIKPKVLLMDEPCSALDPIATMKVEELIHSLR 197 (259)
T ss_pred HHHHHHHHHHHHH-hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh
Confidence 9999999999999 899999999965 35555666666653
|
|
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.5e-18 Score=156.09 Aligned_cols=136 Identities=15% Similarity=0.166 Sum_probs=90.5
Q ss_pred HHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcceeeEEEEEE
Q 020346 151 DSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLL 229 (327)
Q Consensus 151 ~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~tt~~i~~v 229 (327)
+++++.+ +|++++|+|+||+|||||+++|+| +++|++|+|.++|.++...+. ..+++
T Consensus 2 ~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G------------l~~p~~G~i~~~g~~~~~~~~----------~~~~v 59 (230)
T TIGR01184 2 KGVNLTIQQGEFISLIGHSGCGKSTLLNLISG------------LAQPTSGGVILEGKQITEPGP----------DRMVV 59 (230)
T ss_pred CceeEEEcCCCEEEEECCCCCCHHHHHHHHhC------------CCCCCCceEEECCEECCCCCh----------hheEE
Confidence 5677777 899999999999999999999999 889999999999998754321 13688
Q ss_pred EccCCC----eEEeCcccCCc-cccccCH-------h------HHhhhhHHHHHhcCccccccccccccccccCCceEEc
Q 020346 230 PLSGGG----YLADTPGFNQP-SLLKVTK-------Q------SLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVK 291 (327)
Q Consensus 230 ~q~~~~----~i~Dtpg~~~~-~l~~~~~-------~------~l~~~~~~~~~~LSgGq~q~~~~~~~~h~~ep~~~v~ 291 (327)
+|.+.. ++.|+..+... ....... . .+..........|||||+||+.+++++ +.+|.++|+
T Consensus 60 ~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al-~~~p~lllL 138 (230)
T TIGR01184 60 FQNYSLLPWLTVRENIALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARAL-SIRPKVLLL 138 (230)
T ss_pred ecCcccCCCCCHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHH-HcCCCEEEE
Confidence 886422 22233211100 0000100 0 011111111234999999999999999 999999999
Q ss_pred ccH------HHHHHHHHHHHHHHH
Q 020346 292 GDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 292 ~~~------~r~~~~~~ll~e~~~ 309 (327)
|+| ...+...+++.++..
T Consensus 139 DEPt~gLD~~~~~~l~~~l~~~~~ 162 (230)
T TIGR01184 139 DEPFGALDALTRGNLQEELMQIWE 162 (230)
T ss_pred cCCCcCCCHHHHHHHHHHHHHHHH
Confidence 965 355555566666543
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.71 E-value=8e-18 Score=147.19 Aligned_cols=127 Identities=19% Similarity=0.288 Sum_probs=94.9
Q ss_pred chhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcceeeE
Q 020346 146 SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTR 224 (327)
Q Consensus 146 ~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~tt~ 224 (327)
...+++.++|.+ +|++++|+|.||||||||.++|+| ..+||+|+|.+||.+...-.-.. ..+
T Consensus 25 ~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaG------------mi~PTsG~il~n~~~L~~~Dy~~-----R~k 87 (267)
T COG4167 25 TVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAG------------MIEPTSGEILINDHPLHFGDYSF-----RSK 87 (267)
T ss_pred hhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhc------------ccCCCCceEEECCccccccchHh-----hhh
Confidence 445788899998 899999999999999999999999 99999999999999875432221 456
Q ss_pred EEEEEEccCCC---------eEEeCcccCCccccccC-HhH-------------HhhhhHHHHHhcCccccccccccccc
Q 020346 225 HVSLLPLSGGG---------YLADTPGFNQPSLLKVT-KQS-------------LAQTFPEIKEMLKANEPAKCSFNNCL 281 (327)
Q Consensus 225 ~i~~v~q~~~~---------~i~Dtpg~~~~~l~~~~-~~~-------------l~~~~~~~~~~LSgGq~q~~~~~~~~ 281 (327)
++.|++|+++. .+.|.|.-....+..-. ... .+..+|. .||.||+||+++++++
T Consensus 88 ~IRMiFQDpnts~NPRl~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~---~la~~QKQRVaLARAL 164 (267)
T COG4167 88 RIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPH---MLAPGQKQRVALARAL 164 (267)
T ss_pred heeeeecCCccccChhhhhhhHhcchhhhcccCChHHHHHHHHHHHHHhccCccccccchh---hcCchhHHHHHHHHHH
Confidence 78899999754 34566554443332111 011 1122233 3999999999999999
Q ss_pred cccCCceEEccc
Q 020346 282 HLGEPGCVVKGD 293 (327)
Q Consensus 282 h~~ep~~~v~~~ 293 (327)
+-+|.+++.||
T Consensus 165 -IL~P~iIIaDe 175 (267)
T COG4167 165 -ILRPKIIIADE 175 (267)
T ss_pred -hcCCcEEEehh
Confidence 88999999774
|
|
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=5.3e-18 Score=158.72 Aligned_cols=158 Identities=16% Similarity=0.206 Sum_probs=106.4
Q ss_pred cCCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCccccccccc-----ccccceeeccee
Q 020346 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFE-----PILGSKWFEDQR 208 (327)
Q Consensus 135 ~~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~-----p~~G~i~~~g~~ 208 (327)
+.++.+.++|++..+++++++.+ +|++++|+|+||+|||||+++|+| +++ |++|+|+++|.+
T Consensus 26 l~~~nl~~~~~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laG------------l~~~~~~~~~~G~i~i~g~~ 93 (272)
T PRK14236 26 LEVRNLNLFYGDKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNR------------MNDLVDNCRIEGEIRLDGQN 93 (272)
T ss_pred EEEEEEEEEECCeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHh------------cCCCccCCCCceEEEECCEE
Confidence 45677888887778999999998 999999999999999999999999 665 489999999998
Q ss_pred eccccccCCCcceeeEEEEEEEccCCCe---EEeCcccCC--ccccc--cC---HhHHhhh---hH-------HHHHhcC
Q 020346 209 VGEVSTKSGRGKHTTRHVSLLPLSGGGY---LADTPGFNQ--PSLLK--VT---KQSLAQT---FP-------EIKEMLK 268 (327)
Q Consensus 209 v~~~s~~~~~g~~tt~~i~~v~q~~~~~---i~Dtpg~~~--~~l~~--~~---~~~l~~~---~~-------~~~~~LS 268 (327)
+....... ...+..+++++|....+ +.|+..+.. ..... .. ..+.... .+ .....||
T Consensus 94 i~~~~~~~---~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS 170 (272)
T PRK14236 94 IYDKKVDV---AELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLS 170 (272)
T ss_pred CcccccCH---HHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCC
Confidence 75421100 11356799999975322 222221110 00000 00 0011110 00 1123499
Q ss_pred ccccccccccccccccCCceEEcccH------HHHHHHHHHHHHHH
Q 020346 269 ANEPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIR 308 (327)
Q Consensus 269 gGq~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~ 308 (327)
+||+||+++++++ +.+|.++++|+| .....+.+++.++.
T Consensus 171 ~Gq~qrv~laral-~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~ 215 (272)
T PRK14236 171 GGQQQRLVIARAI-AIEPEVLLLDEPTSALDPISTLKIEELITELK 215 (272)
T ss_pred HHHHHHHHHHHHH-HCCCCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence 9999999999999 999999999965 45556666666664
|
|
| >PRK14246 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=6.2e-18 Score=157.15 Aligned_cols=156 Identities=15% Similarity=0.205 Sum_probs=105.3
Q ss_pred cCCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecce------
Q 020346 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQ------ 207 (327)
Q Consensus 135 ~~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~------ 207 (327)
+.++.+.++|++..+++++++.+ +|++++|+|+||+|||||+++|+| +++|++|+|.++|.
T Consensus 11 i~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG------------~~~~~~G~v~~~G~~~~~g~ 78 (257)
T PRK14246 11 FNISRLYLYINDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNR------------LIEIYDSKIKVDGKVLYFGK 78 (257)
T ss_pred eeeeeEEEecCCceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhC------------CCCCCcCceeEcCEEEECCc
Confidence 56788899999889999999998 999999999999999999999999 88999988777764
Q ss_pred eeccccccCCCcceeeEEEEEEEccCCC----eEEeCcccCCccccccCH-------hHHhhh----------hHHHHHh
Q 020346 208 RVGEVSTKSGRGKHTTRHVSLLPLSGGG----YLADTPGFNQPSLLKVTK-------QSLAQT----------FPEIKEM 266 (327)
Q Consensus 208 ~v~~~s~~~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~~l~~~~~-------~~l~~~----------~~~~~~~ 266 (327)
++...+.. ..+..++|++|.+.. ++.|+..+.......... .+..+. .......
T Consensus 79 ~~~~~~~~-----~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 153 (257)
T PRK14246 79 DIFQIDAI-----KLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQ 153 (257)
T ss_pred ccccCCHH-----HHhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCccc
Confidence 33222211 145678999997532 222222211000000000 001010 0111234
Q ss_pred cCccccccccccccccccCCceEEcccHH------HHHHHHHHHHHHH
Q 020346 267 LKANEPAKCSFNNCLHLGEPGCVVKGDWE------RYQYYFQLLDEIR 308 (327)
Q Consensus 267 LSgGq~q~~~~~~~~h~~ep~~~v~~~~~------r~~~~~~ll~e~~ 308 (327)
||+||+||+++++++ +.+|.++++|+|. ..+.+.+++.++.
T Consensus 154 LS~G~~qrl~laral-~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~ 200 (257)
T PRK14246 154 LSGGQQQRLTIARAL-ALKPKVLLMDEPTSMIDIVNSQAIEKLITELK 200 (257)
T ss_pred CCHHHHHHHHHHHHH-HcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh
Confidence 999999999999999 9999999999653 4455556666553
|
|
| >PRK14266 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=4.8e-18 Score=156.69 Aligned_cols=157 Identities=12% Similarity=0.190 Sum_probs=104.5
Q ss_pred CCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCccccccccc-----ccccceeecceee
Q 020346 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFE-----PILGSKWFEDQRV 209 (327)
Q Consensus 136 ~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~-----p~~G~i~~~g~~v 209 (327)
.++.+.++|++..+++++++.+ +|++++|+|+||+|||||+++|+| +.. |++|+|+++|.++
T Consensus 5 ~~~~v~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G------------l~~~~~~~~~~G~v~~~g~~i 72 (250)
T PRK14266 5 EVENLNTYFDDAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNR------------MNDLIPGFRHEGHIYLDGVDI 72 (250)
T ss_pred EEEeEEEEeCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHh------------hhccCCCCCCccEEEECCEEc
Confidence 4567778887777999999998 999999999999999999999999 432 4899999999987
Q ss_pred ccccccCCCcceeeEEEEEEEccCCCe---EEeCcccCCccccccCH----hHHh---hh----------hHHHHHhcCc
Q 020346 210 GEVSTKSGRGKHTTRHVSLLPLSGGGY---LADTPGFNQPSLLKVTK----QSLA---QT----------FPEIKEMLKA 269 (327)
Q Consensus 210 ~~~s~~~~~g~~tt~~i~~v~q~~~~~---i~Dtpg~~~~~l~~~~~----~~l~---~~----------~~~~~~~LSg 269 (327)
...+... ...++.++|+||.+..+ +.|+..+.......... ..+. .. .......||+
T Consensus 73 ~~~~~~~---~~~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~ 149 (250)
T PRK14266 73 YDPAVDV---VELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSG 149 (250)
T ss_pred ccccccH---HHHhhheEEEecCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCH
Confidence 5422100 01456799999975322 12221111000000000 0000 00 0111234999
Q ss_pred cccccccccccccccCCceEEcccH------HHHHHHHHHHHHHH
Q 020346 270 NEPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIR 308 (327)
Q Consensus 270 Gq~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~ 308 (327)
||+||+.|++++ +..|.++++|+| .......+++.++.
T Consensus 150 Gq~qrv~laral-~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~ 193 (250)
T PRK14266 150 GQQQRLCIARTI-AVSPEVILMDEPCSALDPISTTKIEDLIHKLK 193 (250)
T ss_pred HHHHHHHHHHHH-HcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh
Confidence 999999999999 899999999965 35555666666663
|
|
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=6.7e-18 Score=155.86 Aligned_cols=157 Identities=15% Similarity=0.213 Sum_probs=104.2
Q ss_pred CCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCccccccccc--c---cccceeecceee
Q 020346 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFE--P---ILGSKWFEDQRV 209 (327)
Q Consensus 136 ~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~--p---~~G~i~~~g~~v 209 (327)
.++.+.++|++..+++++++.+ +|++++|+|+||+|||||+++|+| +.+ | ++|+|+++|.++
T Consensus 7 ~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G------------l~~~~~~~~~~G~i~~~g~~~ 74 (252)
T PRK14255 7 TSSDVHLFYGKFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNR------------MNDLIPGVTITGNVSLRGQNI 74 (252)
T ss_pred EEEeEEEEECCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhc------------ccccCCCCCcccEEEEcCEEc
Confidence 3567778887778999999998 999999999999999999999999 543 4 599999999887
Q ss_pred ccccccCCCcceeeEEEEEEEccCCCe---EEeCcccCC--ccccc--cCHhHHhh-------------hhHHHHHhcCc
Q 020346 210 GEVSTKSGRGKHTTRHVSLLPLSGGGY---LADTPGFNQ--PSLLK--VTKQSLAQ-------------TFPEIKEMLKA 269 (327)
Q Consensus 210 ~~~s~~~~~g~~tt~~i~~v~q~~~~~---i~Dtpg~~~--~~l~~--~~~~~l~~-------------~~~~~~~~LSg 269 (327)
...+... ...++.+++++|.+..+ +.++..+.. ..... ........ ........||+
T Consensus 75 ~~~~~~~---~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~ 151 (252)
T PRK14255 75 YAPNEDV---VQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSG 151 (252)
T ss_pred ccccccH---HHhcCeEEEEECCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCH
Confidence 5321110 01356799999975321 112211100 00000 00001000 01111234999
Q ss_pred cccccccccccccccCCceEEcccH------HHHHHHHHHHHHHH
Q 020346 270 NEPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIR 308 (327)
Q Consensus 270 Gq~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~ 308 (327)
||+||+.+++++ +.+|.++|+|+| ...+.+.++++++.
T Consensus 152 Gq~qrv~laral-~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~ 195 (252)
T PRK14255 152 GQQQRVCIARVL-AVKPDVILLDEPTSALDPISSTQIENMLLELR 195 (252)
T ss_pred HHHHHHHHHHHH-hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHH
Confidence 999999999999 999999999965 45555666666664
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.6e-18 Score=175.63 Aligned_cols=145 Identities=12% Similarity=0.132 Sum_probs=97.9
Q ss_pred hhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcceeeEEE
Q 020346 148 LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHV 226 (327)
Q Consensus 148 ~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~tt~~i 226 (327)
.+++++++.+ +|++++|+||||||||||+++|+| +++|++|+|+++|.++...+.. ....+.+
T Consensus 277 ~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~G------------l~~p~~G~I~~~g~~~~~~~~~----~~~~~~i 340 (510)
T PRK09700 277 KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFG------------VDKRAGGEIRLNGKDISPRSPL----DAVKKGM 340 (510)
T ss_pred CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhC------------CCcCCCCeEEECCEECCCCCHH----HHHHCCc
Confidence 4789999998 899999999999999999999999 8899999999999887532211 0123568
Q ss_pred EEEEccC---C----CeEEeCcccCCc----------cc-cc-cCH---hHHhhh-------hHHHHHhcCccccccccc
Q 020346 227 SLLPLSG---G----GYLADTPGFNQP----------SL-LK-VTK---QSLAQT-------FPEIKEMLKANEPAKCSF 277 (327)
Q Consensus 227 ~~v~q~~---~----~~i~Dtpg~~~~----------~l-~~-~~~---~~l~~~-------~~~~~~~LSgGq~q~~~~ 277 (327)
+|+||.+ + .++.++..+... .. .. ... .++... .......|||||+||+.|
T Consensus 341 ~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~l 420 (510)
T PRK09700 341 AYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQQKVLI 420 (510)
T ss_pred EEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCChHHHHHHHH
Confidence 9999862 1 123333221100 00 00 000 010110 111123499999999999
Q ss_pred cccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 278 NNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 278 ~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
++++ +.+|.++|+|+| ...+.+.++++++..
T Consensus 421 Aral-~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~ 457 (510)
T PRK09700 421 SKWL-CCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLAD 457 (510)
T ss_pred HHHH-hcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHH
Confidence 9998 899999999965 466666677777654
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.8e-18 Score=176.90 Aligned_cols=155 Identities=18% Similarity=0.158 Sum_probs=105.0
Q ss_pred CceeeccCcc-----------hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceee
Q 020346 137 YEPLFCSVES-----------KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWF 204 (327)
Q Consensus 137 ~~~~~~s~~~-----------~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~ 204 (327)
++.+.++|.. ..+++++++.+ +|++++|+|+||||||||+++|+| +.+|++|+|++
T Consensus 316 ~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~G------------l~~p~~G~I~~ 383 (623)
T PRK10261 316 VRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLR------------LVESQGGEIIF 383 (623)
T ss_pred EeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHc------------CCCCCCcEEEE
Confidence 3456677741 35899999998 999999999999999999999999 88999999999
Q ss_pred cceeeccccccCCCcceeeEEEEEEEccCC--C----eEEeCcccC----C---c---------cccccCHh-HHhhhhH
Q 020346 205 EDQRVGEVSTKSGRGKHTTRHVSLLPLSGG--G----YLADTPGFN----Q---P---------SLLKVTKQ-SLAQTFP 261 (327)
Q Consensus 205 ~g~~v~~~s~~~~~g~~tt~~i~~v~q~~~--~----~i~Dtpg~~----~---~---------~l~~~~~~-~l~~~~~ 261 (327)
+|.++...+.... +..++.++|+||++. . ++.++..+. . . .++.+.+. ...+..+
T Consensus 384 ~g~~i~~~~~~~~--~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~ 461 (623)
T PRK10261 384 NGQRIDTLSPGKL--QALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYP 461 (623)
T ss_pred CCEECCcCCHHHH--HHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCc
Confidence 9998765432110 113457999999742 1 122221110 0 0 00001110 1111122
Q ss_pred HHHHhcCccccccccccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 262 EIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 262 ~~~~~LSgGq~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
..|||||+||+.|++++ +.+|.++|+|+| .-.+.+.++++++..
T Consensus 462 ---~~LSgGqrQRv~iAraL-~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~ 511 (623)
T PRK10261 462 ---HEFSGGQRQRICIARAL-ALNPKVIIADEAVSALDVSIRGQIINLLLDLQR 511 (623)
T ss_pred ---ccCCHHHHHHHHHHHHH-hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence 23999999999999999 899999999965 455556667766654
|
|
| >COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.70 E-value=5.8e-18 Score=143.84 Aligned_cols=139 Identities=18% Similarity=0.290 Sum_probs=104.6
Q ss_pred ceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCccccccccccc---ccceeecceeecccc
Q 020346 138 EPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPI---LGSKWFEDQRVGEVS 213 (327)
Q Consensus 138 ~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~---~G~i~~~g~~v~~~s 213 (327)
+.++........+.++++++ +|+++.++||||||||||+..+.| .+.++ +|+++++++++..++
T Consensus 6 ~nvsl~l~g~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G------------~La~~F~~~G~~~l~~~~l~~lP 73 (213)
T COG4136 6 KNVSLRLPGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIG------------ALAGQFSCTGELWLNEQRLDMLP 73 (213)
T ss_pred eeeeecCCCceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHh------------hcccCcceeeEEEECCeeccccc
Confidence 44555555666778899998 999999999999999999999999 44543 899999999999887
Q ss_pred ccCCCcceeeEEEEEEEccC----CCeEEeCcccCCc--------------cccccCHhHHhhhhHHHHHhcCccccccc
Q 020346 214 TKSGRGKHTTRHVSLLPLSG----GGYLADTPGFNQP--------------SLLKVTKQSLAQTFPEIKEMLKANEPAKC 275 (327)
Q Consensus 214 ~~~~~g~~tt~~i~~v~q~~----~~~i~Dtpg~~~~--------------~l~~~~~~~l~~~~~~~~~~LSgGq~q~~ 275 (327)
. .++++++++|+. ...+-.+..|..+ .++.+...+..+.+|+. |||||+.|+
T Consensus 74 a-------~qRq~GiLFQD~lLFphlsVg~Nl~fAlp~~~KG~aRr~~a~aAL~~~gL~g~f~~dP~t---lSGGQrARv 143 (213)
T COG4136 74 A-------AQRQIGILFQDALLFPHLSVGQNLLFALPATLKGNARRNAANAALERSGLDGAFHQDPAT---LSGGQRARV 143 (213)
T ss_pred h-------hhhheeeeecccccccccccccceEEecCcccccHHHHhhHHHHHHHhccchhhhcChhh---cCcchHHHH
Confidence 5 467899999974 2233333333221 12333344555666766 999999999
Q ss_pred cccccccccCCceEEcccHH-HHHH
Q 020346 276 SFNNCLHLGEPGCVVKGDWE-RYQY 299 (327)
Q Consensus 276 ~~~~~~h~~ep~~~v~~~~~-r~~~ 299 (327)
++.+++ +.+|+.+++|+|. |++.
T Consensus 144 aL~R~L-la~Pk~lLLDEPFS~LD~ 167 (213)
T COG4136 144 ALLRAL-LAQPKALLLDEPFSRLDV 167 (213)
T ss_pred HHHHHH-HhCcceeeeCCchhHHHH
Confidence 999999 9999999999874 4443
|
|
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.70 E-value=4.5e-18 Score=160.22 Aligned_cols=156 Identities=20% Similarity=0.231 Sum_probs=109.4
Q ss_pred CceeeccCcc----hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCccccccccc-c----cccceeecc
Q 020346 137 YEPLFCSVES----KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFE-P----ILGSKWFED 206 (327)
Q Consensus 137 ~~~~~~s~~~----~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~-p----~~G~i~~~g 206 (327)
++.+.++|.. ..++++++|.+ +|++++|||.||||||||.++|+| +.+ | .+|+|.|+|
T Consensus 4 v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~------------llp~~~~~i~~G~i~f~g 71 (316)
T COG0444 4 VKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMG------------LLPKPNARIVGGEILFDG 71 (316)
T ss_pred EeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHh------------ccCCCCCeEeeeEEEECC
Confidence 3455555543 36899999998 999999999999999999999999 665 3 689999999
Q ss_pred eeeccccccCCCcceeeEEEEEEEccCCCeE----------EeCcccCCc-------------cccccCH---hHHhhhh
Q 020346 207 QRVGEVSTKSGRGKHTTRHVSLLPLSGGGYL----------ADTPGFNQP-------------SLLKVTK---QSLAQTF 260 (327)
Q Consensus 207 ~~v~~~s~~~~~g~~tt~~i~~v~q~~~~~i----------~Dtpg~~~~-------------~l~~~~~---~~l~~~~ 260 (327)
+++...+.+. ..+-..+.++|+||++-..+ .++...... .++.+.. +...+.|
T Consensus 72 ~~l~~l~~~~-~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~Y 150 (316)
T COG0444 72 KDLLSLSEKE-LRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSY 150 (316)
T ss_pred cccccCCHHH-HHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhC
Confidence 9988887642 11224578999999863221 111110000 0111111 2234455
Q ss_pred HHHHHhcCccccccccccccccccCCceEEcccHH------HHHHHHHHHHHHHH
Q 020346 261 PEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE------RYQYYFQLLDEIRI 309 (327)
Q Consensus 261 ~~~~~~LSgGq~q~~~~~~~~h~~ep~~~v~~~~~------r~~~~~~ll~e~~~ 309 (327)
|.. |||||+||+.+|.++ ..+|+++|.|+|. -.+...++++++.+
T Consensus 151 Phe---lSGGMrQRV~IAmal-a~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~ 201 (316)
T COG0444 151 PHE---LSGGMRQRVMIAMAL-ALNPKLLIADEPTTALDVTVQAQILDLLKELQR 201 (316)
T ss_pred Ccc---cCCcHHHHHHHHHHH-hCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHH
Confidence 555 999999999999998 9999999999663 45555677777755
|
|
| >PRK14258 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=9.3e-18 Score=156.09 Aligned_cols=159 Identities=17% Similarity=0.181 Sum_probs=106.7
Q ss_pred cCCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCccccccccccc-----ccceeeccee
Q 020346 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPI-----LGSKWFEDQR 208 (327)
Q Consensus 135 ~~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~-----~G~i~~~g~~ 208 (327)
+.++.+.++|++..+++++++.+ +|++++|+|+||+|||||+++|+| +++|+ +|+|.++|++
T Consensus 8 l~~~nl~~~~~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~G------------l~~~~g~i~~~G~i~~~g~~ 75 (261)
T PRK14258 8 IKVNNLSFYYDTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNR------------MNELESEVRVEGRVEFFNQN 75 (261)
T ss_pred EEEeeEEEEeCCeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhc------------ccCCCCCccccceEEECCEE
Confidence 45677888887777999999998 999999999999999999999999 77875 8999999988
Q ss_pred eccccccCCCcceeeEEEEEEEccCCC---eEEeCcccCCc--cc-cccCH-hHHhh---hh----------HHHHHhcC
Q 020346 209 VGEVSTKSGRGKHTTRHVSLLPLSGGG---YLADTPGFNQP--SL-LKVTK-QSLAQ---TF----------PEIKEMLK 268 (327)
Q Consensus 209 v~~~s~~~~~g~~tt~~i~~v~q~~~~---~i~Dtpg~~~~--~l-~~~~~-~~l~~---~~----------~~~~~~LS 268 (327)
+...+... ...++.+++++|+... ++.|+..+... .. ...+. ..... .+ ......||
T Consensus 76 i~~~~~~~---~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS 152 (261)
T PRK14258 76 IYERRVNL---NRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLS 152 (261)
T ss_pred hhccccch---HHhhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCC
Confidence 64321110 1145678999987532 12222111000 00 00000 00110 00 11113499
Q ss_pred ccccccccccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 269 ANEPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 269 gGq~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
+||+||+.+++++ +.+|.++++|+| ...+.+.+++.++..
T Consensus 153 gGq~qrv~laral-~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~ 198 (261)
T PRK14258 153 GGQQQRLCIARAL-AVKPKVLLMDEPCFGLDPIASMKVESLIQSLRL 198 (261)
T ss_pred HHHHHHHHHHHHH-hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHH
Confidence 9999999999999 899999999955 456666677766643
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.9e-18 Score=174.96 Aligned_cols=157 Identities=13% Similarity=0.170 Sum_probs=104.2
Q ss_pred CceeeccCc---chhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCccccccccc-ccccceeecceeecc
Q 020346 137 YEPLFCSVE---SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFE-PILGSKWFEDQRVGE 211 (327)
Q Consensus 137 ~~~~~~s~~---~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~-p~~G~i~~~g~~v~~ 211 (327)
++.+.++|. +..+++++++.+ +|++++|+|+||||||||+|+|+| +++ |++|+|+++|+++..
T Consensus 262 ~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~G------------l~~~~~~G~i~~~g~~~~~ 329 (506)
T PRK13549 262 VRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFG------------AYPGRWEGEIFIDGKPVKI 329 (506)
T ss_pred EecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhC------------CCCCCCCcEEEECCEECCC
Confidence 345666673 346899999998 999999999999999999999999 888 599999999988753
Q ss_pred ccccCCCcceeeEEEEEEEccCC-------CeEEeCcccCCc-cccc---cCH----h---HHhhh-------hHHHHHh
Q 020346 212 VSTKSGRGKHTTRHVSLLPLSGG-------GYLADTPGFNQP-SLLK---VTK----Q---SLAQT-------FPEIKEM 266 (327)
Q Consensus 212 ~s~~~~~g~~tt~~i~~v~q~~~-------~~i~Dtpg~~~~-~l~~---~~~----~---~l~~~-------~~~~~~~ 266 (327)
.+.. +.....++|++|.+. .++.|+..+... .... ... . ++.+. .......
T Consensus 330 ~~~~----~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 405 (506)
T PRK13549 330 RNPQ----QAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIAR 405 (506)
T ss_pred CCHH----HHHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCccccccc
Confidence 3211 113446899998731 122232221100 0000 000 0 11111 1111235
Q ss_pred cCccccccccccccccccCCceEEcccH------HHHHHHHHHHHHHHHh
Q 020346 267 LKANEPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRIR 310 (327)
Q Consensus 267 LSgGq~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~~ 310 (327)
|||||+||+.+++++ +.+|.++|+|+| ...+...+++.++.+.
T Consensus 406 LSgG~kqrv~lA~al-~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~ 454 (506)
T PRK13549 406 LSGGNQQKAVLAKCL-LLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQ 454 (506)
T ss_pred CCHHHHHHHHHHHHH-hhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHC
Confidence 999999999999999 899999999965 4566666777776543
|
|
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=6e-18 Score=158.65 Aligned_cols=158 Identities=14% Similarity=0.222 Sum_probs=105.3
Q ss_pred cCCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCccccccccc-----ccccceeeccee
Q 020346 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFE-----PILGSKWFEDQR 208 (327)
Q Consensus 135 ~~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~-----p~~G~i~~~g~~ 208 (327)
+.++.+.++|++..+++++++.+ +|++++|+|+||+|||||+++|+| +++ |++|+|.++|.+
T Consensus 21 l~~~nl~~~~~~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~G------------l~~~~~~~~~~G~i~~~g~~ 88 (274)
T PRK14265 21 FEVEGVKVFYGGFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNR------------MNDLIPGAKVEGRLLYRDRN 88 (274)
T ss_pred EEEeeEEEEeCCeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhc------------ccccccCCCcCceEEECCEe
Confidence 34567788887777999999998 999999999999999999999999 654 369999999988
Q ss_pred eccccccCCCcceeeEEEEEEEccCCCe---EEeCcccCCc--ccc-ccC--HhHHhh----------hhHHHHHhcCcc
Q 020346 209 VGEVSTKSGRGKHTTRHVSLLPLSGGGY---LADTPGFNQP--SLL-KVT--KQSLAQ----------TFPEIKEMLKAN 270 (327)
Q Consensus 209 v~~~s~~~~~g~~tt~~i~~v~q~~~~~---i~Dtpg~~~~--~l~-~~~--~~~l~~----------~~~~~~~~LSgG 270 (327)
+....... ...++.++|+||.+..+ +.|+..+... ... ... ...... ........||||
T Consensus 89 l~~~~~~~---~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG 165 (274)
T PRK14265 89 IYDSQINS---VKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGG 165 (274)
T ss_pred cccccchh---HHHhhcEEEEccCCccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHHHhcCCcccCCHH
Confidence 75321110 11456799999975321 2222211100 000 000 000000 011112339999
Q ss_pred ccccccccccccccCCceEEcccH------HHHHHHHHHHHHHH
Q 020346 271 EPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIR 308 (327)
Q Consensus 271 q~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~ 308 (327)
|+||+.+++++ +.+|+++|+|+| ...+.+.+++.++.
T Consensus 166 q~qrv~LAraL-~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~ 208 (274)
T PRK14265 166 QQQRLCIARAI-AMKPDVLLMDEPCSALDPISTRQVEELCLELK 208 (274)
T ss_pred HHHHHHHHHHH-hhCCCEEEEeCCcccCCHHHHHHHHHHHHHHh
Confidence 99999999999 999999999955 45566666776664
|
|
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.6e-17 Score=153.37 Aligned_cols=155 Identities=15% Similarity=0.180 Sum_probs=102.9
Q ss_pred CceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCccccccccc-----ccccceeecceeec
Q 020346 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFE-----PILGSKWFEDQRVG 210 (327)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~-----p~~G~i~~~g~~v~ 210 (327)
++.+.++|.+..+++++++.+ +|++++|+|+||+|||||+++|+| +.+ |++|+|+++|.++.
T Consensus 8 ~~~l~~~~~~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G------------~~~~~~~~~~~G~i~~~g~~i~ 75 (251)
T PRK14244 8 VKNLNLWYGSKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNR------------MNDFVPNCKVKGELDIDGIDVY 75 (251)
T ss_pred eeeEEEEECCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHh------------hcccCCCCCcceEEEECCEehH
Confidence 456777777778999999998 999999999999999999999999 554 57999999998875
Q ss_pred cccccCCCcceeeEEEEEEEccCCCe---EEeCcccCC--ccc----cccC--HhHHhhhh----------HHHHHhcCc
Q 020346 211 EVSTKSGRGKHTTRHVSLLPLSGGGY---LADTPGFNQ--PSL----LKVT--KQSLAQTF----------PEIKEMLKA 269 (327)
Q Consensus 211 ~~s~~~~~g~~tt~~i~~v~q~~~~~---i~Dtpg~~~--~~l----~~~~--~~~l~~~~----------~~~~~~LSg 269 (327)
..+... ...++.++|+||++..+ +.++..+.. ... .... ..++.+.+ ......||+
T Consensus 76 ~~~~~~---~~~~~~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~ 152 (251)
T PRK14244 76 SVDTNV---VLLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSG 152 (251)
T ss_pred hcccch---HHHhhhEEEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCH
Confidence 442110 01356789999975321 122211110 000 0000 00111100 011234999
Q ss_pred cccccccccccccccCCceEEcccH------HHHHHHHHHHHHH
Q 020346 270 NEPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEI 307 (327)
Q Consensus 270 Gq~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~ 307 (327)
||+||+.+++++ +.+|.++++|+| ...+.+.+++.++
T Consensus 153 Gq~qrv~laral-~~~p~llllDEPt~~LD~~~~~~l~~~l~~~ 195 (251)
T PRK14244 153 GQQQRLCIARAI-AVKPTMLLMDEPCSALDPVATNVIENLIQEL 195 (251)
T ss_pred HHHHHHHHHHHH-hcCCCEEEEeCCCccCCHHHHHHHHHHHHHH
Confidence 999999999999 899999999965 3444555666665
|
|
| >TIGR02770 nickel_nikD nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.4e-17 Score=152.00 Aligned_cols=140 Identities=21% Similarity=0.203 Sum_probs=93.5
Q ss_pred HHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccc----cccceeecceeeccccccCCCcceeeE
Q 020346 150 LDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEP----ILGSKWFEDQRVGEVSTKSGRGKHTTR 224 (327)
Q Consensus 150 l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p----~~G~i~~~g~~v~~~s~~~~~g~~tt~ 224 (327)
++++++.+ +|++++|+|+||+|||||+|+|+| +++| ++|+|+++|.++.... ...+
T Consensus 2 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G------------l~~p~~~~~~G~i~~~g~~~~~~~-------~~~~ 62 (230)
T TIGR02770 2 VQDLNLSLKRGEVLALVGESGSGKSLTCLAILG------------LLPPGLTQTSGEILLDGRPLLPLS-------IRGR 62 (230)
T ss_pred ccceeEEEcCCCEEEEECCCCCCHHHHHHHHhc------------CCCCccCccccEEEECCEechhhh-------hhhh
Confidence 56788887 899999999999999999999999 8888 8999999999875431 1235
Q ss_pred EEEEEEccCCCeEEe--Cc----ccCCccccccC---H---hHHhh---------hhHHHHHhcCccccccccccccccc
Q 020346 225 HVSLLPLSGGGYLAD--TP----GFNQPSLLKVT---K---QSLAQ---------TFPEIKEMLKANEPAKCSFNNCLHL 283 (327)
Q Consensus 225 ~i~~v~q~~~~~i~D--tp----g~~~~~l~~~~---~---~~l~~---------~~~~~~~~LSgGq~q~~~~~~~~h~ 283 (327)
.+++++|++...+.. +. .+......... . .++.+ ........||+||+||+.+++++ +
T Consensus 63 ~i~~~~q~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral-~ 141 (230)
T TIGR02770 63 HIATIMQNPRTAFNPLFTMGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALAL-L 141 (230)
T ss_pred eeEEEecCchhhcCcccCHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHH-h
Confidence 799999975311111 10 00000000000 0 00000 01111234999999999999999 8
Q ss_pred cCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 284 GEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 284 ~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
.+|.++++|+| ...+.+.+++.++..
T Consensus 142 ~~p~vllLDEPt~~LD~~~~~~l~~~l~~~~~ 173 (230)
T TIGR02770 142 LEPPFLIADEPTTDLDVVNQARVLKLLRELRQ 173 (230)
T ss_pred cCCCEEEEcCCccccCHHHHHHHHHHHHHHHH
Confidence 99999999965 355555666666644
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. |
| >TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.9e-16 Score=147.59 Aligned_cols=145 Identities=26% Similarity=0.375 Sum_probs=107.0
Q ss_pred ccccccccEEEEEeecCCCCCCh-HHHHHHHHHHHhcCCCEEEEeecCCCCcHHHHHHHHhhhhhcCCceeeccCcchhh
Q 020346 71 DPPVANVDHLLLLFSMDQPKLEP-FALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVESKLG 149 (327)
Q Consensus 71 r~~~anvD~lliv~~~~~p~~~~-~~l~r~L~~a~~~~~~~~ivlnK~Dl~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 149 (327)
+..++++|++++|.++..|..+. ..+.+++ .++|+++|+||+|+.+......|...+...+++++.+|..++.+
T Consensus 16 ~~~l~~aDvVl~V~Dar~p~~~~~~~i~~~l-----~~kp~IiVlNK~DL~~~~~~~~~~~~~~~~~~~vi~iSa~~~~g 90 (276)
T TIGR03596 16 KEKLKLVDVVIEVLDARIPLSSRNPMIDEIR-----GNKPRLIVLNKADLADPAVTKQWLKYFEEKGIKALAINAKKGKG 90 (276)
T ss_pred HHHHhhCCEEEEEEeCCCCCCCCChhHHHHH-----CCCCEEEEEEccccCCHHHHHHHHHHHHHcCCeEEEEECCCccc
Confidence 44689999999999998775433 3456655 37899999999999877656677766665667788888887766
Q ss_pred HHHHHhhc----C--------------CCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecc
Q 020346 150 LDSLLQRL----R--------------DQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (327)
Q Consensus 150 l~~l~~~l----~--------------g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~ 211 (327)
++.|...+ + .-.++++|.||+|||||+|.|.+... ..
T Consensus 91 i~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vG~~nvGKSslin~l~~~~~-------------------------~~ 145 (276)
T TIGR03596 91 VKKIIKAAKKLLKEKNEKLKAKGLKNRPIRAMIVGIPNVGKSTLINRLAGKKV-------------------------AK 145 (276)
T ss_pred HHHHHHHHHHHHHHhhhhhhhccCCCCCeEEEEECCCCCCHHHHHHHHhCCCc-------------------------cc
Confidence 66653332 1 23699999999999999999998331 12
Q ss_pred ccccCCCcceeeEEEEEEEccCCCeEEeCcccCCcccc
Q 020346 212 VSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLL 249 (327)
Q Consensus 212 ~s~~~~~g~~tt~~i~~v~q~~~~~i~Dtpg~~~~~l~ 249 (327)
++..+| +|+..+++......+++||||+..+.+.
T Consensus 146 ~~~~~g----~T~~~~~~~~~~~~~l~DtPG~~~~~~~ 179 (276)
T TIGR03596 146 VGNRPG----VTKGQQWIKLSDGLELLDTPGILWPKFE 179 (276)
T ss_pred cCCCCC----eecceEEEEeCCCEEEEECCCcccCCCC
Confidence 222333 7888888888777899999999766543
|
Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members. |
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=6.1e-18 Score=172.12 Aligned_cols=158 Identities=15% Similarity=0.182 Sum_probs=104.4
Q ss_pred CCceeeccCc-----------chhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCccccccccccccccee
Q 020346 136 GYEPLFCSVE-----------SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKW 203 (327)
Q Consensus 136 ~~~~~~~s~~-----------~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~ 203 (327)
.++.+.++|. ...+++++++.+ +|++++|+|+||||||||+++|+| ++ |++|+|+
T Consensus 277 ~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~G------------l~-~~~G~i~ 343 (529)
T PRK15134 277 DVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLR------------LI-NSQGEIW 343 (529)
T ss_pred cccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhC------------cC-CCCcEEE
Confidence 3556777774 246899999998 999999999999999999999999 76 5899999
Q ss_pred ecceeeccccccCCCcceeeEEEEEEEccCC------CeEEeCcccCCc-c---ccccC----HhHHhhhh---HH----
Q 020346 204 FEDQRVGEVSTKSGRGKHTTRHVSLLPLSGG------GYLADTPGFNQP-S---LLKVT----KQSLAQTF---PE---- 262 (327)
Q Consensus 204 ~~g~~v~~~s~~~~~g~~tt~~i~~v~q~~~------~~i~Dtpg~~~~-~---l~~~~----~~~l~~~~---~~---- 262 (327)
++|.++...+.... ...++.++|+||++. .++.++..+... . ...-. ..++...+ ++
T Consensus 344 ~~g~~i~~~~~~~~--~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~ 421 (529)
T PRK15134 344 FDGQPLHNLNRRQL--LPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHR 421 (529)
T ss_pred ECCEEccccchhhH--HHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhc
Confidence 99998765432110 012457899999742 122222211100 0 00000 00111100 01
Q ss_pred HHHhcCccccccccccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 263 IKEMLKANEPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 263 ~~~~LSgGq~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
....|||||+||+.|++++ +.+|.++|+|+| ...+.+.++++++..
T Consensus 422 ~~~~LSgG~~qrv~la~al-~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~ 473 (529)
T PRK15134 422 YPAEFSGGQRQRIAIARAL-ILKPSLIILDEPTSSLDKTVQAQILALLKSLQQ 473 (529)
T ss_pred CCccCCHHHHHHHHHHHHH-hCCCCEEEeeCCccccCHHHHHHHHHHHHHHHH
Confidence 1124999999999999999 999999999965 455666677776654
|
|
| >COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.69 E-value=6.1e-18 Score=151.14 Aligned_cols=150 Identities=16% Similarity=0.232 Sum_probs=109.1
Q ss_pred cchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcceee
Q 020346 145 ESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTT 223 (327)
Q Consensus 145 ~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~tt 223 (327)
..+++++++++.+ +|+.+.|+|.||||||||+|.|+| ...|++|.|.++|.++...+... ..
T Consensus 17 ~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG------------~l~~t~G~I~Idg~dVtk~~~~~-----RA 79 (263)
T COG1101 17 LEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAG------------DLKPTSGQILIDGVDVTKKSVAK-----RA 79 (263)
T ss_pred hHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhC------------ccccCCceEEECceecccCCHHH-----Hh
Confidence 3578999999998 899999999999999999999999 78999999999999999988654 23
Q ss_pred EEEEEEEccC------CCeEEeCcccCCcc-----c-cccCHh--------------HHhhhhHHHHHhcCccccccccc
Q 020346 224 RHVSLLPLSG------GGYLADTPGFNQPS-----L-LKVTKQ--------------SLAQTFPEIKEMLKANEPAKCSF 277 (327)
Q Consensus 224 ~~i~~v~q~~------~~~i~Dtpg~~~~~-----l-~~~~~~--------------~l~~~~~~~~~~LSgGq~q~~~~ 277 (327)
..++-|+|++ .+++.++..+.... + ..+... .+......-...|||||+|.+.+
T Consensus 80 ~~larVfQdp~~gt~~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL 159 (263)
T COG1101 80 NLLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSL 159 (263)
T ss_pred hHHHHHhcchhhCCcccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHH
Confidence 4456688876 12333322111100 0 000000 11112222234599999999999
Q ss_pred cccccccCCceEEcc------cHHHHHHHHHHHHHHHHhHH
Q 020346 278 NNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIREE 312 (327)
Q Consensus 278 ~~~~h~~ep~~~v~~------~~~r~~~~~~ll~e~~~~~~ 312 (327)
..++ ++.|+++++| ||..-+...++-+++.+..+
T Consensus 160 ~MAt-l~~pkiLLLDEHTAALDPkta~~vm~lT~kiV~~~k 199 (263)
T COG1101 160 LMAT-LHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHK 199 (263)
T ss_pred HHHh-cCCCcEEEecchhhcCCcchHHHHHHHHHHHHHhcC
Confidence 9988 9999999998 68888888888888866554
|
|
| >cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export | Back alignment and domain information |
|---|
Probab=99.69 E-value=8.4e-18 Score=153.09 Aligned_cols=149 Identities=15% Similarity=0.098 Sum_probs=96.8
Q ss_pred cCCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccc
Q 020346 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (327)
Q Consensus 135 ~~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s 213 (327)
+..+.+...|+...+++++++.+ +|++++|+|+||||||||+++|+| +++|++|+|+++|.++....
T Consensus 23 l~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G------------~~~p~~G~i~~~g~~~~~~~ 90 (224)
T cd03220 23 LGILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAG------------IYPPDSGTVTVRGRVSSLLG 90 (224)
T ss_pred hhhhhhhhhcCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhC------------CCCCCceEEEECCEEchhhc
Confidence 34456677888888999999998 999999999999999999999999 88999999999998754221
Q ss_pred ccCCCcceeeEEEEEEEccCCCeEEeCcccCCc----ccccc--CHh------HHhhhhHHHHHhcCccccccccccccc
Q 020346 214 TKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQP----SLLKV--TKQ------SLAQTFPEIKEMLKANEPAKCSFNNCL 281 (327)
Q Consensus 214 ~~~~~g~~tt~~i~~v~q~~~~~i~Dtpg~~~~----~l~~~--~~~------~l~~~~~~~~~~LSgGq~q~~~~~~~~ 281 (327)
. ...+.+ ..++.|+..+... ..... ... .+..........||+||+||+.+++++
T Consensus 91 ~----------~~~~~~---~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral 157 (224)
T cd03220 91 L----------GGGFNP---ELTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIAT 157 (224)
T ss_pred c----------cccCCC---CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHH
Confidence 0 111111 2222222211100 00000 000 011111111244999999999999999
Q ss_pred cccCCceEEcccHH------HHHHHHHHHHHHHH
Q 020346 282 HLGEPGCVVKGDWE------RYQYYFQLLDEIRI 309 (327)
Q Consensus 282 h~~ep~~~v~~~~~------r~~~~~~ll~e~~~ 309 (327)
+.+|.++|+|+|. -.....+++.++..
T Consensus 158 -~~~p~llllDEP~~gLD~~~~~~~~~~l~~~~~ 190 (224)
T cd03220 158 -ALEPDILLIDEVLAVGDAAFQEKCQRRLRELLK 190 (224)
T ss_pred -hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh
Confidence 9999999999653 33444455555543
|
Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2. |
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.69 E-value=8.7e-18 Score=169.80 Aligned_cols=156 Identities=15% Similarity=0.194 Sum_probs=102.3
Q ss_pred ceeeccC---cchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccc-cccceeecceeeccc
Q 020346 138 EPLFCSV---ESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEP-ILGSKWFEDQRVGEV 212 (327)
Q Consensus 138 ~~~~~s~---~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p-~~G~i~~~g~~v~~~ 212 (327)
+.+.++| ++..+++++++.+ +|++++|+|+||||||||+|+|+| +.+| ++|+|+++|.++...
T Consensus 261 ~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G------------~~~p~~~G~i~~~g~~~~~~ 328 (500)
T TIGR02633 261 RNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFG------------AYPGKFEGNVFINGKPVDIR 328 (500)
T ss_pred eCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhC------------CCCCCCCeEEEECCEECCCC
Confidence 3455556 2346899999998 999999999999999999999999 7785 899999999887532
Q ss_pred cccCCCcceeeEEEEEEEccCC---C----eEEeCcccCCc-ccc---ccC-------HhHHhhhh-------HHHHHhc
Q 020346 213 STKSGRGKHTTRHVSLLPLSGG---G----YLADTPGFNQP-SLL---KVT-------KQSLAQTF-------PEIKEML 267 (327)
Q Consensus 213 s~~~~~g~~tt~~i~~v~q~~~---~----~i~Dtpg~~~~-~l~---~~~-------~~~l~~~~-------~~~~~~L 267 (327)
+.. ...++++++++|... . ++.++..+... ... .+. ..++.+.+ ......|
T Consensus 329 ~~~----~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~L 404 (500)
T TIGR02633 329 NPA----QAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRL 404 (500)
T ss_pred CHH----HHHhCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccC
Confidence 210 013457899998742 1 12222211100 000 000 00111111 1112359
Q ss_pred CccccccccccccccccCCceEEcccH------HHHHHHHHHHHHHHHh
Q 020346 268 KANEPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRIR 310 (327)
Q Consensus 268 SgGq~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~~ 310 (327)
||||+||+.+++++ +.+|.++|+|+| ...+.+.++++++...
T Consensus 405 SgGqkqrv~la~al-~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~ 452 (500)
T TIGR02633 405 SGGNQQKAVLAKML-LTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQE 452 (500)
T ss_pred CHHHHHHHHHHHHH-hhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhC
Confidence 99999999999998 899999999965 4555566677776543
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.3e-17 Score=187.08 Aligned_cols=137 Identities=15% Similarity=0.220 Sum_probs=104.6
Q ss_pred cCCceeeccCcc--hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecc
Q 020346 135 WGYEPLFCSVES--KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (327)
Q Consensus 135 ~~~~~~~~s~~~--~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~ 211 (327)
+.|+.++++|.. +.+|+++++.+ +|++++|||+||||||||+++|+| +++ ++|+|++||.++..
T Consensus 1218 I~f~nVs~~Y~~~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~r------------l~~-~~G~I~IdG~di~~ 1284 (1490)
T TIGR01271 1218 MDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLR------------LLS-TEGEIQIDGVSWNS 1284 (1490)
T ss_pred EEEEEEEEEeCCCCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhh------------hcC-CCcEEEECCEEccc
Confidence 568889999964 67999999998 999999999999999999999999 886 79999999999998
Q ss_pred ccccCCCcceeeEEEEEEEccC---CCeEEeCcccCCccccccCHhHHhhh------------hHH-----H---HHhcC
Q 020346 212 VSTKSGRGKHTTRHVSLLPLSG---GGYLADTPGFNQPSLLKVTKQSLAQT------------FPE-----I---KEMLK 268 (327)
Q Consensus 212 ~s~~~~~g~~tt~~i~~v~q~~---~~~i~Dtpg~~~~~l~~~~~~~l~~~------------~~~-----~---~~~LS 268 (327)
++... .+++++++||++ .+++.++.-... ..+.+++... .|+ + -..||
T Consensus 1285 i~~~~-----lR~~is~IpQdp~LF~GTIR~NLdp~~----~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLS 1355 (1490)
T TIGR01271 1285 VTLQT-----WRKAFGVIPQKVFIFSGTFRKNLDPYE----QWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLS 1355 (1490)
T ss_pred CCHHH-----HHhceEEEeCCCccCccCHHHHhCccc----CCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCC
Confidence 87655 788999999975 333433321111 0111111111 110 0 11389
Q ss_pred ccccccccccccccccCCceEEcccH
Q 020346 269 ANEPAKCSFNNCLHLGEPGCVVKGDW 294 (327)
Q Consensus 269 gGq~q~~~~~~~~h~~ep~~~v~~~~ 294 (327)
|||+|++++++++ +.+|+++|+|++
T Consensus 1356 gGQrQrL~LARAL-Lr~~~ILlLDEa 1380 (1490)
T TIGR01271 1356 NGHKQLMCLARSI-LSKAKILLLDEP 1380 (1490)
T ss_pred HHHHHHHHHHHHH-hCCCCEEEEeCC
Confidence 9999999999999 999999999954
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.5e-17 Score=169.22 Aligned_cols=159 Identities=17% Similarity=0.201 Sum_probs=104.6
Q ss_pred CceeeccCcc----hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccc-----cccceeecc
Q 020346 137 YEPLFCSVES----KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEP-----ILGSKWFED 206 (327)
Q Consensus 137 ~~~~~~s~~~----~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p-----~~G~i~~~g 206 (327)
++.+.++|.+ ..+++++++.+ +|++++|+|+||||||||+++|+| +++| ++|+|.++|
T Consensus 8 ~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G------------~~~~~~~~~~~G~i~~~g 75 (529)
T PRK15134 8 IENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILR------------LLPSPPVVYPSGDIRFHG 75 (529)
T ss_pred EeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhc------------CCCCCcCCccceEEEECC
Confidence 4567777753 46899999998 999999999999999999999999 7775 799999999
Q ss_pred eeeccccccCCCcceeeEEEEEEEccCCCeEE------eCc--------ccCCcc--------ccccCHhHHhhhhHHHH
Q 020346 207 QRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLA------DTP--------GFNQPS--------LLKVTKQSLAQTFPEIK 264 (327)
Q Consensus 207 ~~v~~~s~~~~~g~~tt~~i~~v~q~~~~~i~------Dtp--------g~~~~~--------l~~~~~~~l~~~~~~~~ 264 (327)
.++...+.... ....++.++|++|++...+. +.. ++.... ++.+...+.........
T Consensus 76 ~~i~~~~~~~~-~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~ 154 (529)
T PRK15134 76 ESLLHASEQTL-RGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYP 154 (529)
T ss_pred EecccCCHHHH-HHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCC
Confidence 98865432110 00012469999997521111 100 000000 00000000000011122
Q ss_pred HhcCccccccccccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 265 EMLKANEPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 265 ~~LSgGq~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
..|||||+||+.|++++ +.+|.++|+|+| ...+.+.++++++..
T Consensus 155 ~~LSgGe~qrv~iAraL-~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~ 204 (529)
T PRK15134 155 HQLSGGERQRVMIAMAL-LTRPELLIADEPTTALDVSVQAQILQLLRELQQ 204 (529)
T ss_pred cccCHHHHHHHHHHHHH-hcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHH
Confidence 34999999999999999 899999999955 466666677777654
|
|
| >COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.7e-18 Score=148.76 Aligned_cols=159 Identities=19% Similarity=0.271 Sum_probs=116.2
Q ss_pred CCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceee--ccc
Q 020346 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRV--GEV 212 (327)
Q Consensus 136 ~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v--~~~ 212 (327)
..+.+.+.|+..+++-++++.- .|++++++||||+|||||++.|.= +.-|.+|+..+.+... +..
T Consensus 4 rv~~in~~yg~~q~lfdi~l~~~~getlvllgpsgagkssllr~lnl------------le~p~sg~l~ia~~~fd~s~~ 71 (242)
T COG4161 4 QLNGINCFYGAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNL------------LEMPRSGTLNIAGNHFDFSKT 71 (242)
T ss_pred EEcccccccccchheeeeeecCCCCCEEEEECCCCCchHHHHHHHHH------------HhCCCCCeEEecccccccccC
Confidence 3456778899999999999885 899999999999999999999986 7789999999887643 222
Q ss_pred cccCCCcceeeEEEEEEEccCCCe--------EEeCcc----cCCc--------cccccCHhHHhhhhHHHHHhcCcccc
Q 020346 213 STKSGRGKHTTRHVSLLPLSGGGY--------LADTPG----FNQP--------SLLKVTKQSLAQTFPEIKEMLKANEP 272 (327)
Q Consensus 213 s~~~~~g~~tt~~i~~v~q~~~~~--------i~Dtpg----~~~~--------~l~~~~~~~l~~~~~~~~~~LSgGq~ 272 (327)
+.. ..++..+++++|++|..+.+ +++.|. +... .+..+.....++.||-- |||||+
T Consensus 72 ~~~-k~i~~lr~~vgmvfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plh---lsggqq 147 (242)
T COG4161 72 PSD-KAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLH---LSGGQQ 147 (242)
T ss_pred ccH-HHHHHHHHhhhhhhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCcee---cccchh
Confidence 221 23445788999999976442 223332 1110 11222333445555554 999999
Q ss_pred ccccccccccccCCceEEcc------cHHHHHHHHHHHHHHHHhH
Q 020346 273 AKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIRE 311 (327)
Q Consensus 273 q~~~~~~~~h~~ep~~~v~~------~~~r~~~~~~ll~e~~~~~ 311 (327)
||+++++++ +.+|.+++.| ||+--.....+++|+..-+
T Consensus 148 qrvaiaral-mmkpqvllfdeptaaldpeitaqvv~iikel~~tg 191 (242)
T COG4161 148 QRVAIARAL-MMEPQVLLFDEPTAALDPEITAQIVSIIKELAETG 191 (242)
T ss_pred hhHHHHHHH-hcCCcEEeecCcccccCHHHHHHHHHHHHHHHhcC
Confidence 999999999 8899999988 5667777778888886544
|
|
| >PRK03695 vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=5.6e-18 Score=156.53 Aligned_cols=142 Identities=19% Similarity=0.216 Sum_probs=93.5
Q ss_pred hHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcceeeEEEE
Q 020346 149 GLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVS 227 (327)
Q Consensus 149 ~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~tt~~i~ 227 (327)
+++++++.+ +|++++|+|+||||||||+++|+| +++ .+|+|.++|.++...+... ..+.++
T Consensus 11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~G------------l~~-~~G~i~~~g~~i~~~~~~~-----~~~~i~ 72 (248)
T PRK03695 11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAG------------LLP-GSGSIQFAGQPLEAWSAAE-----LARHRA 72 (248)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcC------------CCC-CCeEEEECCEecCcCCHHH-----HhhheE
Confidence 688999998 999999999999999999999999 765 4999999999876543221 334578
Q ss_pred EEEccCCC----eEEeCcccCCccccccC--H---hH------HhhhhHHHHHhcCcccccccccccccccc-------C
Q 020346 228 LLPLSGGG----YLADTPGFNQPSLLKVT--K---QS------LAQTFPEIKEMLKANEPAKCSFNNCLHLG-------E 285 (327)
Q Consensus 228 ~v~q~~~~----~i~Dtpg~~~~~l~~~~--~---~~------l~~~~~~~~~~LSgGq~q~~~~~~~~h~~-------e 285 (327)
|+||.+.. ++.++..+......... . .+ +..........||+||+||+.+++++ +. +
T Consensus 73 ~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al-~~~~~~~~p~ 151 (248)
T PRK03695 73 YLSQQQTPPFAMPVFQYLTLHQPDKTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVV-LQVWPDINPA 151 (248)
T ss_pred EecccCccCCCccHHHHHHhcCccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHH-hccccccCCC
Confidence 99986422 22222221110000000 0 00 11111111234999999999999998 65 6
Q ss_pred CceEEcccH------HHHHHHHHHHHHHHH
Q 020346 286 PGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 286 p~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
|.++|+|+| .....+.++++++..
T Consensus 152 p~llllDEPt~~LD~~~~~~l~~~L~~~~~ 181 (248)
T PRK03695 152 GQLLLLDEPMNSLDVAQQAALDRLLSELCQ 181 (248)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHh
Confidence 799999955 455566677776653
|
|
| >PRK14264 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.3e-17 Score=158.81 Aligned_cols=159 Identities=16% Similarity=0.213 Sum_probs=106.7
Q ss_pred cCCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCccccccccc-----ccccceeeccee
Q 020346 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFE-----PILGSKWFEDQR 208 (327)
Q Consensus 135 ~~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~-----p~~G~i~~~g~~ 208 (327)
+.++.+.++|++..+++++++.+ +|++++|+|+||+|||||+++|+| +++ |++|+|.++|.+
T Consensus 46 l~i~nl~~~~~~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~G------------l~~~~~~~p~~G~I~i~g~~ 113 (305)
T PRK14264 46 LSVEDLDVYYGDDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNR------------MNDRIKAARIDGSVELDGQD 113 (305)
T ss_pred EEEEEEEEEeCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhc------------cccccCCCCCceEEEECCEE
Confidence 34667888888778999999998 999999999999999999999999 654 689999999988
Q ss_pred eccccccCCCcceeeEEEEEEEccCCC---eEEeCcccCCcc-----------ccccC-----HhHHhh---hh------
Q 020346 209 VGEVSTKSGRGKHTTRHVSLLPLSGGG---YLADTPGFNQPS-----------LLKVT-----KQSLAQ---TF------ 260 (327)
Q Consensus 209 v~~~s~~~~~g~~tt~~i~~v~q~~~~---~i~Dtpg~~~~~-----------l~~~~-----~~~l~~---~~------ 260 (327)
+...... ....++.++|++|.+.. .+.++..+.... ..... ...+.. .+
T Consensus 114 i~~~~~~---~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~ 190 (305)
T PRK14264 114 IYQDGVN---LVELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEV 190 (305)
T ss_pred ccccccc---HHHHhhceEEEccCCccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhh
Confidence 7542110 01134679999997532 222222111000 00000 000000 00
Q ss_pred ----HHHHHhcCccccccccccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 261 ----PEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 261 ----~~~~~~LSgGq~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
......|||||+||+.+++++ +.+|.++|+|+| .......++++++..
T Consensus 191 ~~~~~~~~~~LSgGq~qrv~LAraL-~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~ 248 (305)
T PRK14264 191 NDRLDDNALGLSGGQQQRLCIARCL-AVDPEVILMDEPASALDPIATSKIEDLIEELAE 248 (305)
T ss_pred hHHhcCccccCCHHHHHHHHHHHHH-hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc
Confidence 011234999999999999999 999999999955 455566667766643
|
|
| >cd01859 MJ1464 MJ1464 | Back alignment and domain information |
|---|
Probab=99.68 E-value=7.3e-16 Score=132.03 Aligned_cols=143 Identities=31% Similarity=0.501 Sum_probs=100.3
Q ss_pred ccccccccccEEEEEeecCCCCCCh-HHHHHHHHHHHhcCCCEEEEeecCCCCcHHHHHHHHhhhhhcCCceeeccCcch
Q 020346 69 ILDPPVANVDHLLLLFSMDQPKLEP-FALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVESK 147 (327)
Q Consensus 69 l~r~~~anvD~lliv~~~~~p~~~~-~~l~r~L~~a~~~~~~~~ivlnK~Dl~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 147 (327)
+.+...+++|.+++|+++..|.... ..+.+++ ...++|+++|+||+|+.+......+.......+++.+.+|..++
T Consensus 5 ~~~~i~~~aD~vl~V~D~~~~~~~~~~~l~~~~---~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~iSa~~~ 81 (156)
T cd01859 5 LVRRIIKESDVVLEVLDARDPELTRSRKLERYV---LELGKKLLIVLNKADLVPKEVLEKWKSIKESEGIPVVYVSAKER 81 (156)
T ss_pred HHHHHHhhCCEEEEEeeCCCCcccCCHHHHHHH---HhCCCcEEEEEEhHHhCCHHHHHHHHHHHHhCCCcEEEEEcccc
Confidence 4556778899999999997764332 2344443 34578999999999998654444443323345667888998887
Q ss_pred hhHHHHHhhc--------CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCc
Q 020346 148 LGLDSLLQRL--------RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRG 219 (327)
Q Consensus 148 ~~l~~l~~~l--------~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g 219 (327)
.+++.+...+ ....++++|.||+|||||+|.|.+... ..++...+
T Consensus 82 ~gi~~L~~~l~~~~~~~~~~~~~~~ig~~~~Gkssl~~~l~~~~~-------------------------~~~~~~~~-- 134 (156)
T cd01859 82 LGTKILRRTIKELAKIDGKEGKVGVVGYPNVGKSSIINALKGRHS-------------------------ASTSPSPG-- 134 (156)
T ss_pred ccHHHHHHHHHHHHhhcCCCcEEEEECCCCCCHHHHHHHHhCCCc-------------------------cccCCCCC--
Confidence 7777665554 245789999999999999999998321 11222222
Q ss_pred ceeeEEEEEEEccCCCeEEeCccc
Q 020346 220 KHTTRHVSLLPLSGGGYLADTPGF 243 (327)
Q Consensus 220 ~~tt~~i~~v~q~~~~~i~Dtpg~ 243 (327)
+|++..++..+...+++||||+
T Consensus 135 --~t~~~~~~~~~~~~~~~DtpGi 156 (156)
T cd01859 135 --YTKGEQLVKITSKIYLLDTPGV 156 (156)
T ss_pred --eeeeeEEEEcCCCEEEEECcCC
Confidence 5666777777667789999996
|
This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus. |
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=1e-17 Score=187.14 Aligned_cols=83 Identities=16% Similarity=0.272 Sum_probs=71.3
Q ss_pred hcCCceeeccCcc---hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeec-cee
Q 020346 134 TWGYEPLFCSVES---KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE-DQR 208 (327)
Q Consensus 134 ~~~~~~~~~s~~~---~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~-g~~ 208 (327)
.+.++.+.++|.+ ..+++++++.+ +|++++|+|+||||||||+++|+| +++|++|+|+++ |.+
T Consensus 382 ~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~g------------l~~p~~G~I~i~~g~~ 449 (1466)
T PTZ00265 382 KIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIER------------LYDPTEGDIIINDSHN 449 (1466)
T ss_pred cEEEEEEEEEcCCCCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHH------------hccCCCCeEEEeCCcc
Confidence 4667889999974 36899999998 999999999999999999999999 999999999994 677
Q ss_pred eccccccCCCcceeeEEEEEEEccC
Q 020346 209 VGEVSTKSGRGKHTTRHVSLLPLSG 233 (327)
Q Consensus 209 v~~~s~~~~~g~~tt~~i~~v~q~~ 233 (327)
+..++... .++++++++|++
T Consensus 450 i~~~~~~~-----lr~~Ig~V~Q~~ 469 (1466)
T PTZ00265 450 LKDINLKW-----WRSKIGVVSQDP 469 (1466)
T ss_pred hhhCCHHH-----HHHhccEecccc
Confidence 76655332 577899999985
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=99.67 E-value=8.9e-18 Score=170.57 Aligned_cols=159 Identities=16% Similarity=0.153 Sum_probs=101.2
Q ss_pred CceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccc--cccccceeecc-------
Q 020346 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWF--EPILGSKWFED------- 206 (327)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~--~p~~G~i~~~g------- 206 (327)
++.++++|++..+++++++.+ +|++++|+|+||||||||+++|+| +. +|++|+|.+++
T Consensus 3 ~~~l~~~~~~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~G------------l~~~~p~~G~i~~~~~~~~~~~ 70 (520)
T TIGR03269 3 VKNLTKKFDGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRG------------MDQYEPTSGRIIYHVALCEKCG 70 (520)
T ss_pred EEEEEEEECCeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhh------------cccCCCCceEEEEecccccccc
Confidence 456777887778999999998 999999999999999999999999 65 79999999973
Q ss_pred ----------------eeecc--ccc---cCCCcceeeEEEEEEEcc-CCC----eEEeCcccCCccccccCHh----HH
Q 020346 207 ----------------QRVGE--VST---KSGRGKHTTRHVSLLPLS-GGG----YLADTPGFNQPSLLKVTKQ----SL 256 (327)
Q Consensus 207 ----------------~~v~~--~s~---~~~~g~~tt~~i~~v~q~-~~~----~i~Dtpg~~~~~l~~~~~~----~l 256 (327)
.++.. ... ....-...++.+++++|. ... ++.++..+.... ...... .+
T Consensus 71 ~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~-~~~~~~~~~~~~ 149 (520)
T TIGR03269 71 YVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEE-IGYEGKEAVGRA 149 (520)
T ss_pred ccccccccccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHH-cCCCHHHHHHHH
Confidence 11110 000 000000124568999995 221 112222110000 000000 00
Q ss_pred h---------hhhHHHHHhcCccccccccccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 257 A---------QTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 257 ~---------~~~~~~~~~LSgGq~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
. .........|||||+||+.|++++ +.+|.++|+|+| ...+.+.++++++..
T Consensus 150 ~~~l~~~gl~~~~~~~~~~LSgGq~qrv~iA~al-~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~ 216 (520)
T TIGR03269 150 VDLIEMVQLSHRITHIARDLSGGEKQRVVLARQL-AKEPFLFLADEPTGTLDPQTAKLVHNALEEAVK 216 (520)
T ss_pred HHHHHHcCChhhhhcCcccCCHHHHHHHHHHHHH-hcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHH
Confidence 0 011111234999999999999999 999999999955 466666677777643
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >PRK14252 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=6e-18 Score=157.63 Aligned_cols=160 Identities=12% Similarity=0.191 Sum_probs=104.9
Q ss_pred cCCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccc-----cccceeeccee
Q 020346 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEP-----ILGSKWFEDQR 208 (327)
Q Consensus 135 ~~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p-----~~G~i~~~g~~ 208 (327)
+.++.+.++|.+..+++++++.+ +|++++|+|+||+|||||+++|+| +.+| ++|+|.++|.+
T Consensus 17 l~~~~l~~~~~~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G------------l~~~~~~~~~sG~i~~~g~~ 84 (265)
T PRK14252 17 SEVNKLNFYYGGYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNR------------MHDLYPGNHYEGEIILHPDN 84 (265)
T ss_pred EEEEEEEEEECCeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhc------------ccCCCCCCCcccEEEEcCcc
Confidence 44678888887778999999998 999999999999999999999999 6553 79999999987
Q ss_pred eccccccCCCcceeeEEEEEEEccCCCe---EEeCcccCC--cccc--ccCHh---HHhhh----------hHHHHHhcC
Q 020346 209 VGEVSTKSGRGKHTTRHVSLLPLSGGGY---LADTPGFNQ--PSLL--KVTKQ---SLAQT----------FPEIKEMLK 268 (327)
Q Consensus 209 v~~~s~~~~~g~~tt~~i~~v~q~~~~~---i~Dtpg~~~--~~l~--~~~~~---~l~~~----------~~~~~~~LS 268 (327)
+...+... .....++.+++++|.+..+ +.|+..+.. .... ....+ ...+. .......||
T Consensus 85 ~~~~~~~~-~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS 163 (265)
T PRK14252 85 VNILSPEV-DPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLS 163 (265)
T ss_pred cccccccc-CHHHHhccEEEEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCC
Confidence 64221100 0011456789999975322 122221110 0000 00000 11000 011123499
Q ss_pred ccccccccccccccccCCceEEcccH------HHHHHHHHHHHHHH
Q 020346 269 ANEPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIR 308 (327)
Q Consensus 269 gGq~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~ 308 (327)
+||+||+.+++++ +.+|+++++|+| .-.+.+.++++++.
T Consensus 164 ~G~~qrv~laral-~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~ 208 (265)
T PRK14252 164 GGQQQRLCIARAL-ATDPEILLFDEPTSALDPIATASIEELISDLK 208 (265)
T ss_pred HHHHHHHHHHHHH-HcCCCEEEEeCCCccCCHHHHHHHHHHHHHHH
Confidence 9999999999999 899999999965 34555556666654
|
|
| >cd01856 YlqF YlqF | Back alignment and domain information |
|---|
Probab=99.67 E-value=8e-16 Score=134.26 Aligned_cols=140 Identities=29% Similarity=0.440 Sum_probs=99.6
Q ss_pred ccccccccEEEEEeecCCCCCChH-HHHHHHHHHHhcCCCEEEEeecCCCCcHHHHHHHHhhhhhcCCceeeccCcchhh
Q 020346 71 DPPVANVDHLLLLFSMDQPKLEPF-ALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVESKLG 149 (327)
Q Consensus 71 r~~~anvD~lliv~~~~~p~~~~~-~l~r~L~~a~~~~~~~~ivlnK~Dl~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 149 (327)
+..++++|++++|+++..|..+.. .+..+ ..++++++|+||+|+.++.....|...+...+++++.+|..++.+
T Consensus 14 ~~~i~~aD~il~v~D~~~~~~~~~~~i~~~-----~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~vi~iSa~~~~g 88 (171)
T cd01856 14 KEKLKLVDLVIEVRDARIPLSSRNPLLEKI-----LGNKPRIIVLNKADLADPKKTKKWLKYFESKGEKVLFVNAKSGKG 88 (171)
T ss_pred HHHHhhCCEEEEEeeccCccCcCChhhHhH-----hcCCCEEEEEehhhcCChHHHHHHHHHHHhcCCeEEEEECCCccc
Confidence 557899999999999987754322 22222 246899999999999876554456555555566788889888777
Q ss_pred HHHHHhhcC-----------------CCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccc
Q 020346 150 LDSLLQRLR-----------------DQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV 212 (327)
Q Consensus 150 l~~l~~~l~-----------------g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~ 212 (327)
++.+...+. +..++++|.||+|||||+|.|.+... ...
T Consensus 89 i~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~~~G~~~vGKstlin~l~~~~~-------------------------~~~ 143 (171)
T cd01856 89 VKKLLKAAKKLLKDIEKLKAKGLLPRGIRAMVVGIPNVGKSTLINRLRGKKV-------------------------AKV 143 (171)
T ss_pred HHHHHHHHHHHHHHHhhhhhcccCCCCeEEEEECCCCCCHHHHHHHHhCCCc-------------------------eee
Confidence 776655431 23799999999999999999998321 111
Q ss_pred cccCCCcceeeEEEEEEEccCCCeEEeCcccC
Q 020346 213 STKSGRGKHTTRHVSLLPLSGGGYLADTPGFN 244 (327)
Q Consensus 213 s~~~~~g~~tt~~i~~v~q~~~~~i~Dtpg~~ 244 (327)
+...+ +|+...++..+...+++||||+.
T Consensus 144 ~~~~~----~T~~~~~~~~~~~~~~iDtpG~~ 171 (171)
T cd01856 144 GNKPG----VTKGIQWIKISPGIYLLDTPGIL 171 (171)
T ss_pred cCCCC----EEeeeEEEEecCCEEEEECCCCC
Confidence 22222 77777777766678999999973
|
Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes. |
| >PRK09563 rbgA GTPase YlqF; Reviewed | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.9e-15 Score=142.85 Aligned_cols=144 Identities=27% Similarity=0.421 Sum_probs=106.3
Q ss_pred ccccccccEEEEEeecCCCCCC-hHHHHHHHHHHHhcCCCEEEEeecCCCCcHHHHHHHHhhhhhcCCceeeccCcchhh
Q 020346 71 DPPVANVDHLLLLFSMDQPKLE-PFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVESKLG 149 (327)
Q Consensus 71 r~~~anvD~lliv~~~~~p~~~-~~~l~r~L~~a~~~~~~~~ivlnK~Dl~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 149 (327)
+..++.+|.++.|.++..|..+ ...+..++ .++|+++|+||+||.+......|...++..+++++.+|..+..+
T Consensus 19 ~~~l~~aDvIL~VvDar~p~~~~~~~l~~~~-----~~kp~iiVlNK~DL~~~~~~~~~~~~~~~~~~~vi~vSa~~~~g 93 (287)
T PRK09563 19 KENLKLVDVVIEVLDARIPLSSENPMIDKII-----GNKPRLLILNKSDLADPEVTKKWIEYFEEQGIKALAINAKKGQG 93 (287)
T ss_pred HHHhhhCCEEEEEEECCCCCCCCChhHHHHh-----CCCCEEEEEEchhcCCHHHHHHHHHHHHHcCCeEEEEECCCccc
Confidence 3468899999999999877543 23455544 27899999999999877656677776765567778888876665
Q ss_pred HHHHHhhc------------------CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecc
Q 020346 150 LDSLLQRL------------------RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (327)
Q Consensus 150 l~~l~~~l------------------~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~ 211 (327)
++.+...+ .+-+++|+|.||||||||+|+|.+.. ...
T Consensus 94 i~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~G~pnvGKSsliN~l~~~~-------------------------~~~ 148 (287)
T PRK09563 94 VKKILKAAKKLLKEKNERRKAKGMRPRAIRAMIIGIPNVGKSTLINRLAGKK-------------------------IAK 148 (287)
T ss_pred HHHHHHHHHHHHHHHHhhhhhcccCcCceEEEEECCCCCCHHHHHHHHhcCC-------------------------ccc
Confidence 55543321 12379999999999999999999933 122
Q ss_pred ccccCCCcceeeEEEEEEEccCCCeEEeCcccCCccc
Q 020346 212 VSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSL 248 (327)
Q Consensus 212 ~s~~~~~g~~tt~~i~~v~q~~~~~i~Dtpg~~~~~l 248 (327)
++..+| +|++.+++....+.+++||||+..+..
T Consensus 149 ~~~~~g----~T~~~~~~~~~~~~~l~DtPGi~~~~~ 181 (287)
T PRK09563 149 TGNRPG----VTKAQQWIKLGKGLELLDTPGILWPKL 181 (287)
T ss_pred cCCCCC----eEEEEEEEEeCCcEEEEECCCcCCCCC
Confidence 233334 888899998877889999999987654
|
|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.5e-17 Score=167.72 Aligned_cols=153 Identities=17% Similarity=0.117 Sum_probs=101.7
Q ss_pred ceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccc-cccceeecceeecccccc
Q 020346 138 EPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEP-ILGSKWFEDQRVGEVSTK 215 (327)
Q Consensus 138 ~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p-~~G~i~~~g~~v~~~s~~ 215 (327)
+.+.++|++..+++++++.+ +|++++|+||||||||||+++|+| +.+| ++|+|+++|.++..-...
T Consensus 264 ~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G------------~~~~~~~G~i~~~g~~~~~~~~~ 331 (490)
T PRK10938 264 NNGVVSYNDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITG------------DHPQGYSNDLTLFGRRRGSGETI 331 (490)
T ss_pred eceEEEECCeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcC------------CCCcccCCeEEEecccCCCCCCH
Confidence 44566777667899999998 999999999999999999999999 6665 799999999865321100
Q ss_pred CCCcceeeEEEEEEEccCCCeE------EeCc--ccCC-------c-c---------ccccCHhH-HhhhhHHHHHhcCc
Q 020346 216 SGRGKHTTRHVSLLPLSGGGYL------ADTP--GFNQ-------P-S---------LLKVTKQS-LAQTFPEIKEMLKA 269 (327)
Q Consensus 216 ~~~g~~tt~~i~~v~q~~~~~i------~Dtp--g~~~-------~-~---------l~~~~~~~-l~~~~~~~~~~LSg 269 (327)
...++++++++|.+.... .+.. ++.. . . ++.+.... ..+. ....|||
T Consensus 332 ----~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---~~~~LSg 404 (490)
T PRK10938 332 ----WDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADA---PFHSLSW 404 (490)
T ss_pred ----HHHHhhceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccC---chhhCCH
Confidence 113457899998642211 0100 0000 0 0 00011111 1111 1234999
Q ss_pred cccccccccccccccCCceEEcccH------HHHHHHHHHHHHHHHh
Q 020346 270 NEPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRIR 310 (327)
Q Consensus 270 Gq~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~~ 310 (327)
||+||+.+++++ +.+|.++++|+| ...+.+.+++.++...
T Consensus 405 Gq~qrv~la~al-~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~ 450 (490)
T PRK10938 405 GQQRLALIVRAL-VKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISE 450 (490)
T ss_pred HHHHHHHHHHHH-hcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhc
Confidence 999999999999 999999999965 4556666777776543
|
|
| >COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.66 E-value=1e-16 Score=148.04 Aligned_cols=126 Identities=21% Similarity=0.252 Sum_probs=93.4
Q ss_pred hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcceeeEE
Q 020346 147 KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRH 225 (327)
Q Consensus 147 ~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~tt~~ 225 (327)
..++++++|.+ +|++++|||.||||||||-++|+| +++||+|+|+|+|+++..++... ...
T Consensus 26 v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~------------L~~pt~G~i~f~g~~i~~~~~~~-----~~~- 87 (268)
T COG4608 26 VKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILG------------LEEPTSGEILFEGKDITKLSKEE-----RRE- 87 (268)
T ss_pred eEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHc------------CcCCCCceEEEcCcchhhcchhH-----HHH-
Confidence 36899999998 999999999999999999999999 99999999999999876554100 000
Q ss_pred EEEEEccCCCeEEeCcccCCccccccCH-hHHhhhhHHHHHhcCccccccccccccccccCCceEEcccHH------HHH
Q 020346 226 VSLLPLSGGGYLADTPGFNQPSLLKVTK-QSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE------RYQ 298 (327)
Q Consensus 226 i~~v~q~~~~~i~Dtpg~~~~~l~~~~~-~~l~~~~~~~~~~LSgGq~q~~~~~~~~h~~ep~~~v~~~~~------r~~ 298 (327)
.....++.+.. .+....+|.. |||||+||+.+|+++ ..+|..+|.|++. -.+
T Consensus 88 -----------------~v~elL~~Vgl~~~~~~ryPhe---lSGGQrQRi~IARAL-al~P~liV~DEpvSaLDvSiqa 146 (268)
T COG4608 88 -----------------RVLELLEKVGLPEEFLYRYPHE---LSGGQRQRIGIARAL-ALNPKLIVADEPVSALDVSVQA 146 (268)
T ss_pred -----------------HHHHHHHHhCCCHHHhhcCCcc---cCchhhhhHHHHHHH-hhCCcEEEecCchhhcchhHHH
Confidence 00001122221 2345566666 999999999999999 7899999999663 345
Q ss_pred HHHHHHHHHHHhH
Q 020346 299 YYFQLLDEIRIRE 311 (327)
Q Consensus 299 ~~~~ll~e~~~~~ 311 (327)
....++.++.+..
T Consensus 147 qIlnLL~dlq~~~ 159 (268)
T COG4608 147 QILNLLKDLQEEL 159 (268)
T ss_pred HHHHHHHHHHHHh
Confidence 5566777765543
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.2e-17 Score=169.65 Aligned_cols=157 Identities=17% Similarity=0.155 Sum_probs=101.4
Q ss_pred CceeeccCcc-----hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeec-ceee
Q 020346 137 YEPLFCSVES-----KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE-DQRV 209 (327)
Q Consensus 137 ~~~~~~s~~~-----~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~-g~~v 209 (327)
++.+.++|.. ..+++++++.+ +|++++|+|+||||||||+++|+| +.+|++|+|.++ |.+.
T Consensus 282 ~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G------------l~~p~~G~i~~~~g~~~ 349 (520)
T TIGR03269 282 VRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAG------------VLEPTSGEVNVRVGDEW 349 (520)
T ss_pred EeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhC------------CCCCCCeEEEEecCCcc
Confidence 4556777742 45899999998 999999999999999999999999 889999999996 5432
Q ss_pred ccccccCC-CcceeeEEEEEEEccCCC----eEEeCcccC----Ccc----------ccccCHhH-----HhhhhHHHHH
Q 020346 210 GEVSTKSG-RGKHTTRHVSLLPLSGGG----YLADTPGFN----QPS----------LLKVTKQS-----LAQTFPEIKE 265 (327)
Q Consensus 210 ~~~s~~~~-~g~~tt~~i~~v~q~~~~----~i~Dtpg~~----~~~----------l~~~~~~~-----l~~~~~~~~~ 265 (327)
..++.... .....+++++|+||.+.. ++.++..+. ... ++.+.... ..... ..
T Consensus 350 ~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~---~~ 426 (520)
T TIGR03269 350 VDMTKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDKY---PD 426 (520)
T ss_pred ccccccchhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCccchhhhhCC---hh
Confidence 11111000 000124568999997532 222222110 000 00011100 11111 23
Q ss_pred hcCccccccccccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 266 MLKANEPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 266 ~LSgGq~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
.|||||+||+.|++++ +.+|.++|+|+| ...+.+.+++.++..
T Consensus 427 ~LSgGq~qrv~laral-~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~ 475 (520)
T TIGR03269 427 ELSEGERHRVALAQVL-IKEPRIVILDEPTGTMDPITKVDVTHSILKARE 475 (520)
T ss_pred hCCHHHHHHHHHHHHH-hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence 4999999999999999 899999999965 455666666666643
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=1e-17 Score=169.46 Aligned_cols=145 Identities=12% Similarity=0.198 Sum_probs=97.6
Q ss_pred hhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcceeeEEE
Q 020346 148 LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHV 226 (327)
Q Consensus 148 ~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~tt~~i 226 (327)
.+++++++.+ +|++++|+|+||||||||+++|+| +.+|++|+|.++|.++...+... ..++++
T Consensus 266 ~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G------------~~~p~~G~I~~~g~~i~~~~~~~----~~~~~i 329 (501)
T PRK10762 266 PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYG------------ALPRTSGYVTLDGHEVVTRSPQD----GLANGI 329 (501)
T ss_pred CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhC------------CCCCCceEEEECCEECCCCCHHH----HHHCCC
Confidence 3588999988 899999999999999999999999 88999999999998875432111 134568
Q ss_pred EEEEccCC-------CeEEeCcccCCc-cc----cccC----Hh---------HHh-hhhHHHHHhcCcccccccccccc
Q 020346 227 SLLPLSGG-------GYLADTPGFNQP-SL----LKVT----KQ---------SLA-QTFPEIKEMLKANEPAKCSFNNC 280 (327)
Q Consensus 227 ~~v~q~~~-------~~i~Dtpg~~~~-~l----~~~~----~~---------~l~-~~~~~~~~~LSgGq~q~~~~~~~ 280 (327)
+|+||.+. .++.++..+... .. .... .. .+. .........|||||+||+.|+++
T Consensus 330 ~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqrv~lA~a 409 (501)
T PRK10762 330 VYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKVAIARG 409 (501)
T ss_pred EEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHHHHHHHHH
Confidence 99999741 122222211100 00 0000 00 110 01111223499999999999999
Q ss_pred ccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 281 LHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 281 ~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
+ +.+|.++|+|+| ...+.+.++++++..
T Consensus 410 l-~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~ 443 (501)
T PRK10762 410 L-MTRPKVLILDEPTRGVDVGAKKEIYQLINQFKA 443 (501)
T ss_pred H-hhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHH
Confidence 9 899999999965 455666667777654
|
|
| >PLN03211 ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.9e-17 Score=169.47 Aligned_cols=150 Identities=16% Similarity=0.186 Sum_probs=102.6
Q ss_pred eeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCccccccccccc--ccceeecceeecccccc
Q 020346 139 PLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPI--LGSKWFEDQRVGEVSTK 215 (327)
Q Consensus 139 ~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~--~G~i~~~g~~v~~~s~~ 215 (327)
.+..+|+++.+++++++.+ +|+.++|+||||||||||+|+|+| ..+|+ +|+|.+||.++.. .
T Consensus 73 ~l~~~~~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG------------~~~~~~~sG~I~inG~~~~~---~ 137 (659)
T PLN03211 73 DETRQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAG------------RIQGNNFTGTILANNRKPTK---Q 137 (659)
T ss_pred cccccCCCCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhC------------CCCCCceeEEEEECCEECch---h
Confidence 3455677778999999998 999999999999999999999999 66775 9999999987642 1
Q ss_pred CCCcceeeEEEEEEEccCC----CeEEeCcccCCcc-c-cccCHhH----HhhhhH-----H---------HHHhcCccc
Q 020346 216 SGRGKHTTRHVSLLPLSGG----GYLADTPGFNQPS-L-LKVTKQS----LAQTFP-----E---------IKEMLKANE 271 (327)
Q Consensus 216 ~~~g~~tt~~i~~v~q~~~----~~i~Dtpg~~~~~-l-~~~~~~~----l~~~~~-----~---------~~~~LSgGq 271 (327)
..+.+++++|++. .++.|+..+.... + .....++ ..+... + ....|||||
T Consensus 138 ------~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGe 211 (659)
T PLN03211 138 ------ILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGE 211 (659)
T ss_pred ------hccceEEECcccccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhh
Confidence 3346899999752 2333433321100 0 0111111 111111 0 112499999
Q ss_pred cccccccccccccCCceEEcccH------HHHHHHHHHHHHHHHh
Q 020346 272 PAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRIR 310 (327)
Q Consensus 272 ~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~~ 310 (327)
+||+.++.++ +.+|.++++|+| .......++++++.+.
T Consensus 212 rqRv~ia~aL-~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~~ 255 (659)
T PLN03211 212 RKRVSIAHEM-LINPSLLILDEPTSGLDATAAYRLVLTLGSLAQK 255 (659)
T ss_pred hhHHHHHHHH-HhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhC
Confidence 9999999999 999999999965 3445555666666543
|
|
| >cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=99.65 E-value=9.4e-17 Score=148.49 Aligned_cols=128 Identities=17% Similarity=0.200 Sum_probs=84.3
Q ss_pred hHHHHHhhc------CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCccee
Q 020346 149 GLDSLLQRL------RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHT 222 (327)
Q Consensus 149 ~l~~l~~~l------~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~t 222 (327)
.++++++.+ +|++++|+|+||||||||+++|+| +++|++|+|.++|.
T Consensus 9 ~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G------------~~~p~~G~i~~~g~--------------- 61 (246)
T cd03237 9 TLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAG------------VLKPDEGDIEIELD--------------- 61 (246)
T ss_pred ccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhC------------CCcCCCCeEEECCc---------------
Confidence 445555554 689999999999999999999999 88999999998874
Q ss_pred eEEEEEEEccCC----CeEEeCcccCC-----------ccccccCHhHHhhhhHHHHHhcCccccccccccccccccCCc
Q 020346 223 TRHVSLLPLSGG----GYLADTPGFNQ-----------PSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPG 287 (327)
Q Consensus 223 t~~i~~v~q~~~----~~i~Dtpg~~~-----------~~l~~~~~~~l~~~~~~~~~~LSgGq~q~~~~~~~~h~~ep~ 287 (327)
.+++++|... .++.|...+.. ..++.+......+. ....|||||+||+++++++ +.+|+
T Consensus 62 --~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~l~l~~~~~~---~~~~LSgGe~qrv~iaraL-~~~p~ 135 (246)
T cd03237 62 --TVSYKPQYIKADYEGTVRDLLSSITKDFYTHPYFKTEIAKPLQIEQILDR---EVPELSGGELQRVAIAACL-SKDAD 135 (246)
T ss_pred --eEEEecccccCCCCCCHHHHHHHHhhhccccHHHHHHHHHHcCCHHHhhC---ChhhCCHHHHHHHHHHHHH-hcCCC
Confidence 3455555421 12222211000 00111111111111 2234999999999999999 99999
Q ss_pred eEEcccH------HHHHHHHHHHHHHHH
Q 020346 288 CVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 288 ~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
++++|+| .....+.++++++..
T Consensus 136 llllDEPt~~LD~~~~~~l~~~l~~~~~ 163 (246)
T cd03237 136 IYLLDEPSAYLDVEQRLMASKVIRRFAE 163 (246)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence 9999965 344555566666643
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.1e-17 Score=164.57 Aligned_cols=155 Identities=17% Similarity=0.178 Sum_probs=108.2
Q ss_pred CceeeccCcc----hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCccccccccccc----ccceeecce
Q 020346 137 YEPLFCSVES----KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPI----LGSKWFEDQ 207 (327)
Q Consensus 137 ~~~~~~s~~~----~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~----~G~i~~~g~ 207 (327)
++++.++|.. ..+++++||.+ +|++++|||.|||||||+.++|+| +.++. +|+|.|+|.
T Consensus 8 V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~g------------ll~~~~~~~~G~I~~~g~ 75 (539)
T COG1123 8 VENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMG------------LLPEGGRITSGEVILDGR 75 (539)
T ss_pred EeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhc------------cCCCCCcccceEEEECCc
Confidence 3444444432 25899999998 999999999999999999999999 55555 899999999
Q ss_pred eeccccccCCCcceeeEEEEEEEccCCCeEEeCcccC------------Cc------------cccccCHhHHh--hhhH
Q 020346 208 RVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFN------------QP------------SLLKVTKQSLA--QTFP 261 (327)
Q Consensus 208 ~v~~~s~~~~~g~~tt~~i~~v~q~~~~~i~Dtpg~~------------~~------------~l~~~~~~~l~--~~~~ 261 (327)
++...+.... .+-..+.++++||++-..+ +|.+. .. .++.+...+.. ..+|
T Consensus 76 dl~~l~~~~~-r~~rg~~Ia~i~Q~p~~sl--nP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yP 152 (539)
T COG1123 76 DLLGLSEREM-RKLRGKRIAMIFQDPMTSL--NPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYP 152 (539)
T ss_pred chhcCCHHHH-HHhccccEEEEecCchhhc--CchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCC
Confidence 8877765421 2224577999999852211 11110 00 01111111111 2356
Q ss_pred HHHHhcCccccccccccccccccCCceEEcccH------HHHHHHHHHHHHHHHh
Q 020346 262 EIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRIR 310 (327)
Q Consensus 262 ~~~~~LSgGq~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~~ 310 (327)
.. |||||+||+.+|.++ ..+|.++|.|+| ......+++++++...
T Consensus 153 he---LSGG~rQRv~iAmAL-a~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e 203 (539)
T COG1123 153 HQ---LSGGMRQRVMIAMAL-ALKPKLLIADEPTTALDVTTQAQILDLLKDLQRE 203 (539)
T ss_pred cc---cCchHHHHHHHHHHH-hCCCCEEEECCCccccCHHHHHHHHHHHHHHHHH
Confidence 55 999999999999998 999999999965 4666677777777644
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.8e-17 Score=169.47 Aligned_cols=158 Identities=18% Similarity=0.157 Sum_probs=104.1
Q ss_pred CCceeeccCcc----hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeec
Q 020346 136 GYEPLFCSVES----KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (327)
Q Consensus 136 ~~~~~~~s~~~----~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~ 210 (327)
.++.+.++|.. ..+++++++.+ +|++++|+|+||||||||+++|+| +++|++|+|.++|..+.
T Consensus 14 ~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~G------------ll~p~~G~i~~~g~~~~ 81 (623)
T PRK10261 14 AVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMR------------LLEQAGGLVQCDKMLLR 81 (623)
T ss_pred EEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHc------------CCCCCCeEEEECCEEec
Confidence 45667777752 36899999998 999999999999999999999999 89999999999987552
Q ss_pred c-------ccccCCCc-cee-eEEEEEEEccCC------CeEEeCcccCCc---c-------------ccccCHh---HH
Q 020346 211 E-------VSTKSGRG-KHT-TRHVSLLPLSGG------GYLADTPGFNQP---S-------------LLKVTKQ---SL 256 (327)
Q Consensus 211 ~-------~s~~~~~g-~~t-t~~i~~v~q~~~------~~i~Dtpg~~~~---~-------------l~~~~~~---~l 256 (327)
. +....... +.. .+.++|++|++. .++.++..+... . ++.+.+. ..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~ 161 (623)
T PRK10261 82 RRSRQVIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTI 161 (623)
T ss_pred cccccccccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhH
Confidence 1 10000000 001 246899999741 122222211100 0 0001110 01
Q ss_pred hhhhHHHHHhcCccccccccccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 257 AQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 257 ~~~~~~~~~~LSgGq~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
.+.. ...|||||+||+.|++++ +.+|.++|+|+| ...+.+.++++++..
T Consensus 162 ~~~~---~~~LSgGq~QRv~iA~AL-~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~ 216 (623)
T PRK10261 162 LSRY---PHQLSGGMRQRVMIAMAL-SCRPAVLIADEPTTALDVTIQAQILQLIKVLQK 216 (623)
T ss_pred HhCC---CccCCHHHHHHHHHHHHH-hCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHH
Confidence 1111 223999999999999999 899999999954 466667777777754
|
|
| >cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.6e-17 Score=153.04 Aligned_cols=154 Identities=18% Similarity=0.154 Sum_probs=95.5
Q ss_pred eeeccCcch-hhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCccccccccccccccee-----------ec
Q 020346 139 PLFCSVESK-LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKW-----------FE 205 (327)
Q Consensus 139 ~~~~s~~~~-~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~-----------~~ 205 (327)
.+.++|+.+ .+++++++ + +|++++|+|+||||||||+|+|+| +++|++|+|+ ++
T Consensus 5 ~~~~~y~~~~~~l~~i~~-i~~Ge~~~IvG~nGsGKSTLlk~l~G------------l~~p~~G~I~~~~~~~~~~~~~~ 71 (255)
T cd03236 5 EPVHRYGPNSFKLHRLPV-PREGQVLGLVGPNGIGKSTALKILAG------------KLKPNLGKFDDPPDWDEILDEFR 71 (255)
T ss_pred CcceeecCcchhhhcCCC-CCCCCEEEEECCCCCCHHHHHHHHhC------------CcCCCCceEeeccccchhhhhcc
Confidence 355677654 58999984 6 899999999999999999999999 9999999996 77
Q ss_pred ceeeccccccCCCcceeeEEEEEEEccCCC---eEEeCccc--CCccccc-----cCHhHHhhhhHHHHHhcCccccccc
Q 020346 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGG---YLADTPGF--NQPSLLK-----VTKQSLAQTFPEIKEMLKANEPAKC 275 (327)
Q Consensus 206 g~~v~~~s~~~~~g~~tt~~i~~v~q~~~~---~i~Dtpg~--~~~~l~~-----~~~~~l~~~~~~~~~~LSgGq~q~~ 275 (327)
|.++........+ ....+++++|.... .+.++... ....... ++...+..........||+||+||+
T Consensus 72 g~~~~~~~~~~~~---~~~~i~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv 148 (255)
T cd03236 72 GSELQNYFTKLLE---GDVKVIVKPQYVDLIPKAVKGKVGELLKKKDERGKLDELVDQLELRHVLDRNIDQLSGGELQRV 148 (255)
T ss_pred CchhhhhhHHhhh---cccceeeecchhccCchHHHHHHHHHhchhHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHH
Confidence 7776543211100 11235666654211 11111110 0000000 0000011111112234999999999
Q ss_pred cccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 276 SFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 276 ~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
.+++++ +.+|.++++|+| .-...+..+++++..
T Consensus 149 ~laral-~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~ 187 (255)
T cd03236 149 AIAAAL-ARDADFYFFDEPSSYLDIKQRLNAARLIRELAE 187 (255)
T ss_pred HHHHHH-HhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh
Confidence 999999 899999999965 344555667776654
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.64 E-value=1e-16 Score=145.80 Aligned_cols=137 Identities=17% Similarity=0.227 Sum_probs=92.2
Q ss_pred CcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCccee
Q 020346 144 VESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHT 222 (327)
Q Consensus 144 ~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~t 222 (327)
+....+|+|++|.+ +|+.++|||+||||||||+++|+| .++||+|+|.++|.-..-+..
T Consensus 37 ~~~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaG------------i~~Pt~G~v~v~G~v~~li~l-------- 96 (249)
T COG1134 37 VAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAG------------IYKPTSGKVKVTGKVAPLIEL-------- 96 (249)
T ss_pred cceEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhC------------ccCCCCceEEEcceEehhhhc--------
Confidence 34567899999998 999999999999999999999999 999999999998865433321
Q ss_pred eEEEEEEEccCCCeEEeCcccCCccccccCHhHHhhhhHHH-------------HHhcCccccccccccccccccCCceE
Q 020346 223 TRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEI-------------KEMLKANEPAKCSFNNCLHLGEPGCV 289 (327)
Q Consensus 223 t~~i~~v~q~~~~~i~Dtpg~~~~~l~~~~~~~l~~~~~~~-------------~~~LSgGq~q~~~~~~~~h~~ep~~~ 289 (327)
..++-|+ .+-.+|.-+....+ .+...++.+.++++ .+.+|.||+.|++|+-++| -+|+|+
T Consensus 97 --g~Gf~pe---lTGreNi~l~~~~~-G~~~~ei~~~~~eIieFaELG~fi~~PvktYSSGM~aRLaFsia~~-~~pdIL 169 (249)
T COG1134 97 --GAGFDPE---LTGRENIYLRGLIL-GLTRKEIDEKVDEIIEFAELGDFIDQPVKTYSSGMYARLAFSVATH-VEPDIL 169 (249)
T ss_pred --ccCCCcc---cchHHHHHHHHHHh-CccHHHHHHHHHHHHHHHHHHHHhhCchhhccHHHHHHHHHhhhhh-cCCCEE
Confidence 2233232 22223333322211 22333333333333 2348999999999998885 599999
Q ss_pred Eccc------HHHHHHHHHHHHHH
Q 020346 290 VKGD------WERYQYYFQLLDEI 307 (327)
Q Consensus 290 v~~~------~~r~~~~~~ll~e~ 307 (327)
|.|+ ..-.+-..+.+.|+
T Consensus 170 llDEvlavGD~~F~~K~~~rl~e~ 193 (249)
T COG1134 170 LLDEVLAVGDAAFQEKCLERLNEL 193 (249)
T ss_pred EEehhhhcCCHHHHHHHHHHHHHH
Confidence 9874 33334444445555
|
|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=5.1e-17 Score=165.43 Aligned_cols=58 Identities=17% Similarity=0.295 Sum_probs=53.3
Q ss_pred CceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecc
Q 020346 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFED 206 (327)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g 206 (327)
++.++++|++..+++++++.+ +|++++|+|+||||||||+++|+| +++|++|+|.+++
T Consensus 4 i~~ls~~~~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G------------l~~p~~G~i~~~~ 62 (530)
T PRK15064 4 TANITMQFGAKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGG------------DLEPSAGNVSLDP 62 (530)
T ss_pred EEEEEEEeCCcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhC------------CCCCCCceEEecC
Confidence 467788888778999999998 999999999999999999999999 8899999999875
|
|
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.7e-17 Score=167.91 Aligned_cols=146 Identities=11% Similarity=0.143 Sum_probs=97.3
Q ss_pred hhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcceeeEEE
Q 020346 148 LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHV 226 (327)
Q Consensus 148 ~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~tt~~i 226 (327)
.+++++++.+ +|++++|+||||||||||+++|+| +++|++|+|+++|+++...+... ...+++
T Consensus 267 ~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G------------~~~p~~G~i~~~g~~~~~~~~~~----~~~~~i 330 (501)
T PRK11288 267 GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYG------------ATRRTAGQVYLDGKPIDIRSPRD----AIRAGI 330 (501)
T ss_pred CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcC------------CCcCCCceEEECCEECCCCCHHH----HHhCCC
Confidence 4689999988 999999999999999999999999 88999999999998775322111 134568
Q ss_pred EEEEccCC-------CeEEeCcccCCc-c-------ccc-cC---HhHHhhhh-------HHHHHhcCcccccccccccc
Q 020346 227 SLLPLSGG-------GYLADTPGFNQP-S-------LLK-VT---KQSLAQTF-------PEIKEMLKANEPAKCSFNNC 280 (327)
Q Consensus 227 ~~v~q~~~-------~~i~Dtpg~~~~-~-------l~~-~~---~~~l~~~~-------~~~~~~LSgGq~q~~~~~~~ 280 (327)
+|+||.+. .++.++..+... . ... .. ..++...+ ......|||||+||+.++++
T Consensus 331 ~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl~la~a 410 (501)
T PRK11288 331 MLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKAILGRW 410 (501)
T ss_pred EEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHHHHHHHH
Confidence 99998742 122222211100 0 000 00 00111111 11123499999999999999
Q ss_pred ccccCCceEEcccH------HHHHHHHHHHHHHHHh
Q 020346 281 LHLGEPGCVVKGDW------ERYQYYFQLLDEIRIR 310 (327)
Q Consensus 281 ~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~~ 310 (327)
+ +.+|.++|+|+| ...+.+.++++++.+.
T Consensus 411 l-~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~ 445 (501)
T PRK11288 411 L-SEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQ 445 (501)
T ss_pred H-ccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhC
Confidence 8 899999999965 4555566666666543
|
|
| >TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=99.64 E-value=5.9e-17 Score=147.32 Aligned_cols=129 Identities=16% Similarity=0.191 Sum_probs=86.4
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcceeeEEEEEEEccCCC--
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGG-- 235 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~tt~~i~~v~q~~~~-- 235 (327)
+|++++|+|+||||||||+++|+| +++|++|+|+++|.++.. ..++++|+||.+..
T Consensus 5 ~Ge~~~l~G~nGsGKSTLl~~l~G------------~~~~~~G~i~~~g~~~~~----------~~~~i~~v~q~~~~~~ 62 (223)
T TIGR03771 5 KGELLGLLGPNGAGKTTLLRAILG------------LIPPAKGTVKVAGASPGK----------GWRHIGYVPQRHEFAW 62 (223)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhC------------CCCCCCceEEECCccchH----------hhCcEEEecccccccC
Confidence 799999999999999999999999 889999999999987531 23568999987532
Q ss_pred ----eEEeCcccCCc----cc--cc-cCHhHHhh---------hhHHHHHhcCccccccccccccccccCCceEEcccH-
Q 020346 236 ----YLADTPGFNQP----SL--LK-VTKQSLAQ---------TFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDW- 294 (327)
Q Consensus 236 ----~i~Dtpg~~~~----~l--~~-~~~~~l~~---------~~~~~~~~LSgGq~q~~~~~~~~h~~ep~~~v~~~~- 294 (327)
++.|+..+... .. .. .....+.. ........||+||+||+.+++++ +.+|.++++|+|
T Consensus 63 ~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral-~~~p~llilDEP~ 141 (223)
T TIGR03771 63 DFPISVAHTVMSGRTGHIGWLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARAL-ATRPSVLLLDEPF 141 (223)
T ss_pred CCCccHHHHHHhccccccccccCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHH-hcCCCEEEEeCCc
Confidence 12222111000 00 00 00000111 01111234999999999999999 999999999965
Q ss_pred -----HHHHHHHHHHHHHHH
Q 020346 295 -----ERYQYYFQLLDEIRI 309 (327)
Q Consensus 295 -----~r~~~~~~ll~e~~~ 309 (327)
...+.+.+++.++..
T Consensus 142 ~~LD~~~~~~l~~~l~~~~~ 161 (223)
T TIGR03771 142 TGLDMPTQELLTELFIELAG 161 (223)
T ss_pred ccCCHHHHHHHHHHHHHHHH
Confidence 355556666666643
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown. |
| >cd03291 ABCC_CFTR1 The CFTR subfamily domain 1 | Back alignment and domain information |
|---|
Probab=99.64 E-value=5.7e-17 Score=152.87 Aligned_cols=127 Identities=16% Similarity=0.156 Sum_probs=86.5
Q ss_pred cCCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccc
Q 020346 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (327)
Q Consensus 135 ~~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s 213 (327)
+.++.+.+. ...+++++++.+ +|++++|+|+||+|||||+++|+| +++|++|+|.++|
T Consensus 40 l~i~nls~~--~~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~G------------l~~p~~G~I~i~g------- 98 (282)
T cd03291 40 LFFSNLCLV--GAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILG------------ELEPSEGKIKHSG------- 98 (282)
T ss_pred EEEEEEEEe--cccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhC------------CCCCCCcEEEECC-------
Confidence 344555553 456899999998 999999999999999999999999 8899999999876
Q ss_pred ccCCCcceeeEEEEEEEccCCC---eEEeCcccCCcc--------ccccCHhHHhhhhHHH--------HHhcCcccccc
Q 020346 214 TKSGRGKHTTRHVSLLPLSGGG---YLADTPGFNQPS--------LLKVTKQSLAQTFPEI--------KEMLKANEPAK 274 (327)
Q Consensus 214 ~~~~~g~~tt~~i~~v~q~~~~---~i~Dtpg~~~~~--------l~~~~~~~l~~~~~~~--------~~~LSgGq~q~ 274 (327)
.++|++|.+.. ++.|+..+.... +...........++.. ...||+||+||
T Consensus 99 -----------~i~yv~q~~~l~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qr 167 (282)
T cd03291 99 -----------RISFSSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRAR 167 (282)
T ss_pred -----------EEEEEeCcccccccCHHHHhhcccccCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHH
Confidence 25667765321 222332221100 0000111111111110 13599999999
Q ss_pred ccccccccccCCceEEcccH
Q 020346 275 CSFNNCLHLGEPGCVVKGDW 294 (327)
Q Consensus 275 ~~~~~~~h~~ep~~~v~~~~ 294 (327)
+.|++++ +.+|.++++|+|
T Consensus 168 v~lAraL-~~~p~iLiLDEP 186 (282)
T cd03291 168 ISLARAV-YKDADLYLLDSP 186 (282)
T ss_pred HHHHHHH-hcCCCEEEEECC
Confidence 9999999 899999999966
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.3e-16 Score=161.07 Aligned_cols=147 Identities=11% Similarity=0.116 Sum_probs=96.5
Q ss_pred hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcceeeEE
Q 020346 147 KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRH 225 (327)
Q Consensus 147 ~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~tt~~ 225 (327)
+.+++++++.+ +|++++|+|+||||||||+++|+| +.+|++|+|+++|.++...+... ..++.
T Consensus 261 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~G------------l~~p~~G~i~~~g~~i~~~~~~~----~~~~~ 324 (491)
T PRK10982 261 QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFG------------IREKSAGTITLHGKKINNHNANE----AINHG 324 (491)
T ss_pred CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcC------------CCcCCccEEEECCEECCCCCHHH----HHHCC
Confidence 35789999998 999999999999999999999999 88999999999998875433211 12455
Q ss_pred EEEEEccCC-------CeE-----EeCcccCCccccccCH----h---------HHh-hhhHHHHHhcCccccccccccc
Q 020346 226 VSLLPLSGG-------GYL-----ADTPGFNQPSLLKVTK----Q---------SLA-QTFPEIKEMLKANEPAKCSFNN 279 (327)
Q Consensus 226 i~~v~q~~~-------~~i-----~Dtpg~~~~~l~~~~~----~---------~l~-~~~~~~~~~LSgGq~q~~~~~~ 279 (327)
++|+||... ..+ .+.............. . .+. .........|||||+||+.+++
T Consensus 325 i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~ 404 (491)
T PRK10982 325 FALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIGR 404 (491)
T ss_pred CEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHHHHHHHHHH
Confidence 888888632 111 1100000000000000 0 010 0111122349999999999999
Q ss_pred cccccCCceEEcccH------HHHHHHHHHHHHHHHh
Q 020346 280 CLHLGEPGCVVKGDW------ERYQYYFQLLDEIRIR 310 (327)
Q Consensus 280 ~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~~ 310 (327)
++ +.+|.++|+||| ...+...++++++...
T Consensus 405 al-~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~ 440 (491)
T PRK10982 405 WL-LTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKK 440 (491)
T ss_pred HH-hcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHC
Confidence 99 999999999966 3445555666666543
|
|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=5.2e-17 Score=165.38 Aligned_cols=141 Identities=16% Similarity=0.182 Sum_probs=94.8
Q ss_pred CceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccccc
Q 020346 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (327)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~ 215 (327)
++.+.++|++..+++++++.+ +|++++|+||||||||||+++|+| +++|++|+|.+++.
T Consensus 322 ~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G------------~~~p~~G~i~~~~~-------- 381 (530)
T PRK15064 322 VENLTKGFDNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVG------------ELEPDSGTVKWSEN-------- 381 (530)
T ss_pred EEeeEEeeCCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhC------------CCCCCCeEEEECCc--------
Confidence 445677787777999999998 899999999999999999999999 88999999998752
Q ss_pred CCCcceeeEEEEEEEccCC------CeEEeCcccCC-ccccccCHhHHhhhh-------HHHHHhcCccccccccccccc
Q 020346 216 SGRGKHTTRHVSLLPLSGG------GYLADTPGFNQ-PSLLKVTKQSLAQTF-------PEIKEMLKANEPAKCSFNNCL 281 (327)
Q Consensus 216 ~~~g~~tt~~i~~v~q~~~------~~i~Dtpg~~~-~~l~~~~~~~l~~~~-------~~~~~~LSgGq~q~~~~~~~~ 281 (327)
..++|++|... .++.+...+.. .....-....+...+ ......|||||+||+.|++++
T Consensus 382 --------~~i~~~~q~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al 453 (530)
T PRK15064 382 --------ANIGYYAQDHAYDFENDLTLFDWMSQWRQEGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLM 453 (530)
T ss_pred --------eEEEEEcccccccCCCCCcHHHHHHHhccCCccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHH
Confidence 35788888642 11222211100 000000000111110 111234999999999999998
Q ss_pred cccCCceEEcccHH------HHHHHHHHHHH
Q 020346 282 HLGEPGCVVKGDWE------RYQYYFQLLDE 306 (327)
Q Consensus 282 h~~ep~~~v~~~~~------r~~~~~~ll~e 306 (327)
+.+|.++|+|+|. ..+.+.+++.+
T Consensus 454 -~~~p~lllLDEPt~~LD~~~~~~l~~~l~~ 483 (530)
T PRK15064 454 -MQKPNVLVMDEPTNHMDMESIESLNMALEK 483 (530)
T ss_pred -hcCCCEEEEcCCCCCCCHHHHHHHHHHHHH
Confidence 8999999999663 44444444444
|
|
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.63 E-value=7e-17 Score=165.45 Aligned_cols=143 Identities=15% Similarity=0.157 Sum_probs=97.6
Q ss_pred cCCceeeccCc-chhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccc
Q 020346 135 WGYEPLFCSVE-SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV 212 (327)
Q Consensus 135 ~~~~~~~~s~~-~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~ 212 (327)
+.++.+.++|+ +..+++++++.+ +|++++|+|+||||||||+++|+| +++|++|+|.+++.
T Consensus 7 l~i~~l~~~y~~~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G------------~~~p~~G~i~~~~~----- 69 (556)
T PRK11819 7 YTMNRVSKVVPPKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAG------------VDKEFEGEARPAPG----- 69 (556)
T ss_pred EEEeeEEEEeCCCCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhC------------CCCCCCceEEecCC-----
Confidence 34567888887 678999999998 999999999999999999999999 88999999988531
Q ss_pred cccCCCcceeeEEEEEEEccCCC----eEEeCcccCCccc-------c------ccC-----------------------
Q 020346 213 STKSGRGKHTTRHVSLLPLSGGG----YLADTPGFNQPSL-------L------KVT----------------------- 252 (327)
Q Consensus 213 s~~~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~~l-------~------~~~----------------------- 252 (327)
..++|++|.+.. ++.|+..+....+ . ...
T Consensus 70 -----------~~i~~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (556)
T PRK11819 70 -----------IKVGYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADA 138 (556)
T ss_pred -----------CEEEEEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCc
Confidence 248899997522 2233322110000 0 000
Q ss_pred ---HhHHhhh--------hHHHHHhcCccccccccccccccccCCceEEcccH------HHHHHHHHHHHH
Q 020346 253 ---KQSLAQT--------FPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDE 306 (327)
Q Consensus 253 ---~~~l~~~--------~~~~~~~LSgGq~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e 306 (327)
...+... .......|||||+||+.|++++ +.+|+++|+|+| +..+.+.+++++
T Consensus 139 ~~~~~~~~~~l~~~gl~~~~~~~~~LSgGqkqrv~la~al-~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~ 208 (556)
T PRK11819 139 WDLDSQLEIAMDALRCPPWDAKVTKLSGGERRRVALCRLL-LEKPDMLLLDEPTNHLDAESVAWLEQFLHD 208 (556)
T ss_pred cchHHHHHHHHHhCCCCcccCchhhcCHHHHHHHHHHHHH-hCCCCEEEEcCCCCcCChHHHHHHHHHHHh
Confidence 0000000 0111234999999999999999 999999999965 344444455554
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.9e-17 Score=184.08 Aligned_cols=153 Identities=12% Similarity=0.075 Sum_probs=107.3
Q ss_pred CCceeeccCcc--hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccc
Q 020346 136 GYEPLFCSVES--KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV 212 (327)
Q Consensus 136 ~~~~~~~s~~~--~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~ 212 (327)
.++.+.++|++ ..+++++++.+ +|++++|+|+||||||||+|+|+| +.+|++|+|+++|.++...
T Consensus 1939 ~v~nLsK~Y~~~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~G------------ll~ptsG~I~i~G~~i~~~ 2006 (2272)
T TIGR01257 1939 RLNELTKVYSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTG------------DTTVTSGDATVAGKSILTN 2006 (2272)
T ss_pred EEEEEEEEECCCCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhC------------CCCCCccEEEECCEECcch
Confidence 35677888875 57999999998 999999999999999999999999 8899999999999987531
Q ss_pred cccCCCcceeeEEEEEEEccCCC----eEEeCccc-------CCcc--------ccccCHhHHhhhhHHHHHhcCccccc
Q 020346 213 STKSGRGKHTTRHVSLLPLSGGG----YLADTPGF-------NQPS--------LLKVTKQSLAQTFPEIKEMLKANEPA 273 (327)
Q Consensus 213 s~~~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~-------~~~~--------l~~~~~~~l~~~~~~~~~~LSgGq~q 273 (327)
. . ..+++++++||.+.. ++.|+..+ .... ++.+.+.+..+ .....|||||+|
T Consensus 2007 ~-~-----~~r~~IGy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~d---k~~~~LSGGqKq 2077 (2272)
T TIGR01257 2007 I-S-----DVHQNMGYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYAD---RLAGTYSGGNKR 2077 (2272)
T ss_pred H-H-----HHhhhEEEEeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhc---CChhhCCHHHHH
Confidence 1 1 145679999997522 22222111 0000 00111111111 123449999999
Q ss_pred cccccccccccCCceEEcccH------HHHHHHHHHHHHHHHh
Q 020346 274 KCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRIR 310 (327)
Q Consensus 274 ~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~~ 310 (327)
|+.++.++ +++|.++++||| ...+...++++++...
T Consensus 2078 RLslA~AL-i~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~ 2119 (2272)
T TIGR01257 2078 KLSTAIAL-IGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIRE 2119 (2272)
T ss_pred HHHHHHHH-hcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC
Confidence 99999999 999999999954 4555555666666443
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >PRK10535 macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.1e-16 Score=166.64 Aligned_cols=159 Identities=16% Similarity=0.157 Sum_probs=107.6
Q ss_pred CCceeeccCcc----hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeec
Q 020346 136 GYEPLFCSVES----KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (327)
Q Consensus 136 ~~~~~~~s~~~----~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~ 210 (327)
.++.+.++|.. ..+++++++.+ +|++++|+|+||+|||||+++|+| +++|++|+|.++|+++.
T Consensus 6 ~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G------------l~~~~~G~i~~~g~~i~ 73 (648)
T PRK10535 6 ELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGC------------LDKPTSGTYRVAGQDVA 73 (648)
T ss_pred EEeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhc------------CCCCCCeEEEECCEEcC
Confidence 35667777753 35899999998 999999999999999999999999 89999999999999887
Q ss_pred cccccCCCcceeeEEEEEEEccCCC----eEEeCcccCCccccccCHh----HHh---------hhhHHHHHhcCccccc
Q 020346 211 EVSTKSGRGKHTTRHVSLLPLSGGG----YLADTPGFNQPSLLKVTKQ----SLA---------QTFPEIKEMLKANEPA 273 (327)
Q Consensus 211 ~~s~~~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~~l~~~~~~----~l~---------~~~~~~~~~LSgGq~q 273 (327)
..+.... ....++.+++++|++.. ++.|+..+... ....... ... .........||+||+|
T Consensus 74 ~~~~~~~-~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~-~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~q 151 (648)
T PRK10535 74 TLDADAL-AQLRREHFGFIFQRYHLLSHLTAAQNVEVPAV-YAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQ 151 (648)
T ss_pred cCCHHHH-HHHHhccEEEEeCCcccCCCCCHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHCCChhhhcCCcccCCHHHHH
Confidence 6543210 00024679999997532 11222111000 0000000 000 0011112349999999
Q ss_pred cccccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 274 KCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 274 ~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
|+.+++|+ +.+|+++++|+| .-.+.+.++++++.+
T Consensus 152 rv~LAraL-~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~ 192 (648)
T PRK10535 152 RVSIARAL-MNGGQVILADEPTGALDSHSGEEVMAILHQLRD 192 (648)
T ss_pred HHHHHHHH-hcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh
Confidence 99999999 999999999955 466666777777654
|
|
| >COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.4e-16 Score=145.00 Aligned_cols=158 Identities=17% Similarity=0.175 Sum_probs=111.7
Q ss_pred cCCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccc
Q 020346 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (327)
Q Consensus 135 ~~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s 213 (327)
+.++.+.++|.++.+|++|+..+ +|+..+|+|+||||||||+++|+| .+.|++|.+.+.|...+...
T Consensus 32 i~l~~v~v~r~gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~------------~~~pssg~~~~~G~~~G~~~ 99 (257)
T COG1119 32 IELKNVSVRRNGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTG------------EHPPSSGDVTLLGRRFGKGE 99 (257)
T ss_pred EEecceEEEECCEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhc------------ccCCCCCceeeeeeeccCCc
Confidence 45788999999999999999998 999999999999999999999999 78999999999999887665
Q ss_pred ccCCCcceeeEEEEEEEccC------CCeE--------EeCcccCCccccccCHh---------HHhhhhHHHHHhcCcc
Q 020346 214 TKSGRGKHTTRHVSLLPLSG------GGYL--------ADTPGFNQPSLLKVTKQ---------SLAQTFPEIKEMLKAN 270 (327)
Q Consensus 214 ~~~~~g~~tt~~i~~v~q~~------~~~i--------~Dtpg~~~~~l~~~~~~---------~l~~~~~~~~~~LSgG 270 (327)
.. ...+++||++.-.- +..+ .++.|+-.......... .+.+....-...||-|
T Consensus 100 ~~----~elrk~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~LS~G 175 (257)
T COG1119 100 TI----FELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQG 175 (257)
T ss_pred ch----HHHHHHhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchhhcCHh
Confidence 41 11678888875321 1111 23333332111111111 1111111123349999
Q ss_pred ccccccccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 271 EPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 271 q~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
|+||+-|++++ ++.|.++|+|+| .-.+.+++.+.++..
T Consensus 176 e~rrvLiaRAL-v~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~ 219 (257)
T COG1119 176 EQRRVLIARAL-VKDPELLILDEPAQGLDLIAREQLLNRLEELAA 219 (257)
T ss_pred HHHHHHHHHHH-hcCCCEEEecCccccCChHHHHHHHHHHHHHhc
Confidence 99999999999 999999999965 344556666666543
|
|
| >cd01855 YqeH YqeH | Back alignment and domain information |
|---|
Probab=99.62 E-value=4.5e-15 Score=131.39 Aligned_cols=146 Identities=23% Similarity=0.328 Sum_probs=96.2
Q ss_pred ccccccEEEEEeecCCCCCChHHHHHHHHHHHhcCCCEEEEeecCCCCcHHH----HHHHH--hhhhhcCC---ceeecc
Q 020346 73 PVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEV----LNTWK--SRLHTWGY---EPLFCS 143 (327)
Q Consensus 73 ~~anvD~lliv~~~~~p~~~~~~l~r~L~~a~~~~~~~~ivlnK~Dl~~~~~----~~~~~--~~~~~~~~---~~~~~s 143 (327)
...++|.+++|+++..|..+.. ..+ .....++|+++|+||+|+.+.+. ...|. ..+...++ ..+.+|
T Consensus 31 ~~~~ad~il~VvD~~~~~~~~~--~~l--~~~~~~~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vS 106 (190)
T cd01855 31 ISPKKALVVHVVDIFDFPGSLI--PRL--RLFGGNNPVILVGNKIDLLPKDKNLVRIKNWLRAKAAAGLGLKPKDVILIS 106 (190)
T ss_pred cccCCcEEEEEEECccCCCccc--hhH--HHhcCCCcEEEEEEchhcCCCCCCHHHHHHHHHHHHHhhcCCCcccEEEEE
Confidence 4678999999999876543321 121 12235789999999999975432 22232 11122333 567889
Q ss_pred CcchhhHHHHHhhc-----CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCC
Q 020346 144 VESKLGLDSLLQRL-----RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGR 218 (327)
Q Consensus 144 ~~~~~~l~~l~~~l-----~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~ 218 (327)
..++.+++.+...+ .+..++|+|.||+|||||+|+|.+.... .+. ...-...+..+
T Consensus 107 A~~~~gi~eL~~~l~~~l~~~~~~~~~G~~nvGKStliN~l~~~~~~-----------~~~------~~~~~~~~~~~-- 167 (190)
T cd01855 107 AKKGWGVEELINAIKKLAKKGGDVYVVGATNVGKSTLINALLKKDNG-----------KKK------LKDLLTTSPIP-- 167 (190)
T ss_pred CCCCCCHHHHHHHHHHHhhcCCcEEEEcCCCCCHHHHHHHHHHhccc-----------ccc------cccccccCCCC--
Confidence 88888887776554 4578999999999999999999983210 000 00001222222
Q ss_pred cceeeEEEEEEEccCCCeEEeCccc
Q 020346 219 GKHTTRHVSLLPLSGGGYLADTPGF 243 (327)
Q Consensus 219 g~~tt~~i~~v~q~~~~~i~Dtpg~ 243 (327)
+||++...++...+.+++||||+
T Consensus 168 --gtT~~~~~~~~~~~~~~~DtPG~ 190 (190)
T cd01855 168 --GTTLDLIKIPLGNGKKLYDTPGI 190 (190)
T ss_pred --CeeeeeEEEecCCCCEEEeCcCC
Confidence 38999988888767899999996
|
YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. |
| >COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.8e-16 Score=146.03 Aligned_cols=146 Identities=14% Similarity=0.173 Sum_probs=100.1
Q ss_pred hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcceeeEE
Q 020346 147 KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRH 225 (327)
Q Consensus 147 ~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~tt~~ 225 (327)
-.+++++||.+ +|++++++|+|||||||+|++|.| +..|++|.|.++|.+.-.-.. ..-++
T Consensus 37 ~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTG------------ll~p~~G~v~V~G~~Pf~~~~------~~~~~ 98 (325)
T COG4586 37 IEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTG------------LLLPTSGKVRVNGKDPFRRRE------EYLRS 98 (325)
T ss_pred hhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhC------------ccccCCCeEEecCcCcchhHH------HHHHH
Confidence 45889999998 899999999999999999999999 889999999999976433111 12334
Q ss_pred EEEEEccCCCeEEeCcccCCcccc----ccCHhHHhhh-------------hHHHHHhcCccccccccccccccccCCce
Q 020346 226 VSLLPLSGGGYLADTPGFNQPSLL----KVTKQSLAQT-------------FPEIKEMLKANEPAKCSFNNCLHLGEPGC 288 (327)
Q Consensus 226 i~~v~q~~~~~i~Dtpg~~~~~l~----~~~~~~l~~~-------------~~~~~~~LSgGq~q~~~~~~~~h~~ep~~ 288 (327)
++++.-.......|.|......+. .+....-.+. ...-.+.||-||+.||.++.++ +|.|.+
T Consensus 99 ~~~v~gqk~ql~Wdlp~~ds~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRmraeLaaaL-Lh~p~V 177 (325)
T COG4586 99 IGLVMGQKLQLWWDLPALDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAAL-LHPPKV 177 (325)
T ss_pred HHHHhhhhheeeeechhhhhHHHHHHHHhCCHHHHHHHHHHHHHHhcchhhhhhhhhhccchHHHHHHHHHHh-cCCCcE
Confidence 444433223355666644332211 1111111111 1112345999999999999888 999999
Q ss_pred EEcccHH------HHHHHHHHHHHHHHhH
Q 020346 289 VVKGDWE------RYQYYFQLLDEIRIRE 311 (327)
Q Consensus 289 ~v~~~~~------r~~~~~~ll~e~~~~~ 311 (327)
+++|+|. -....+++++|.....
T Consensus 178 LfLDEpTvgLDV~aq~~ir~Flke~n~~~ 206 (325)
T COG4586 178 LFLDEPTVGLDVNAQANIREFLKEYNEER 206 (325)
T ss_pred EEecCCccCcchhHHHHHHHHHHHHHHhh
Confidence 9999663 5566677788776544
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=99.61 E-value=7.8e-17 Score=182.46 Aligned_cols=151 Identities=17% Similarity=0.173 Sum_probs=106.1
Q ss_pred cCCceeeccCc--chhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecc
Q 020346 135 WGYEPLFCSVE--SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (327)
Q Consensus 135 ~~~~~~~~s~~--~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~ 211 (327)
+.++.+.+.|+ ++.+++++++.+ +|++++|+|+||||||||+|+|+| +.+|++|+|+++|.++..
T Consensus 929 L~I~nLsK~y~~~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaG------------Ll~PtsG~I~i~G~dI~~ 996 (2272)
T TIGR01257 929 VCVKNLVKIFEPSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTG------------LLPPTSGTVLVGGKDIET 996 (2272)
T ss_pred EEEEeEEEEecCCCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhc------------CCCCCceEEEECCEECcc
Confidence 34567778884 467999999998 999999999999999999999999 899999999999998753
Q ss_pred ccccCCCcceeeEEEEEEEccCCC----eEEeCcccCCc--c-------------ccccCHhHHhhhhHHHHHhcCcccc
Q 020346 212 VSTKSGRGKHTTRHVSLLPLSGGG----YLADTPGFNQP--S-------------LLKVTKQSLAQTFPEIKEMLKANEP 272 (327)
Q Consensus 212 ~s~~~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~--~-------------l~~~~~~~l~~~~~~~~~~LSgGq~ 272 (327)
.. . ..++.++++||.+.. ++.|+..+... . ++.+...+..+. ....|||||+
T Consensus 997 ~~-~-----~~r~~IG~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~---~~~~LSGGqK 1067 (2272)
T TIGR01257 997 NL-D-----AVRQSLGMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNE---EAQDLSGGMQ 1067 (2272)
T ss_pred hH-H-----HHhhcEEEEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcC---ChhhCCHHHH
Confidence 21 1 145679999997522 22222221100 0 001111111111 1234999999
Q ss_pred ccccccccccccCCceEEcccH------HHHHHHHHHHHHH
Q 020346 273 AKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEI 307 (327)
Q Consensus 273 q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~ 307 (327)
||++++.++ +++|.++++||| ...+...++++++
T Consensus 1068 QRLsLArAL-i~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l 1107 (2272)
T TIGR01257 1068 RKLSVAIAF-VGDAKVVVLDEPTSGVDPYSRRSIWDLLLKY 1107 (2272)
T ss_pred HHHHHHHHH-HcCCCEEEEECCCcCCCHHHHHHHHHHHHHH
Confidence 999999999 999999999965 3445555666665
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.9e-17 Score=164.93 Aligned_cols=144 Identities=16% Similarity=0.183 Sum_probs=95.3
Q ss_pred hHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcceeeEEEE
Q 020346 149 GLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVS 227 (327)
Q Consensus 149 ~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~tt~~i~ 227 (327)
+++++++.+ +|++++|+|+||||||||+++|+| +.+|++|+|+++|.++...+.... ....++
T Consensus 278 ~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G------------l~~p~~G~i~~~g~~i~~~~~~~~----~~~~i~ 341 (510)
T PRK15439 278 GFRNISLEVRAGEILGLAGVVGAGRTELAETLYG------------LRPARGGRIMLNGKEINALSTAQR----LARGLV 341 (510)
T ss_pred CccceeEEEcCCcEEEEECCCCCCHHHHHHHHcC------------CCCCCCcEEEECCEECCCCCHHHH----HhCCcE
Confidence 578888887 899999999999999999999999 889999999999988754432110 234689
Q ss_pred EEEccCC---C----eEEeCccc---C--Ccccccc-C---HhH------Hh-hhhHHHHHhcCcccccccccccccccc
Q 020346 228 LLPLSGG---G----YLADTPGF---N--QPSLLKV-T---KQS------LA-QTFPEIKEMLKANEPAKCSFNNCLHLG 284 (327)
Q Consensus 228 ~v~q~~~---~----~i~Dtpg~---~--~~~l~~~-~---~~~------l~-~~~~~~~~~LSgGq~q~~~~~~~~h~~ 284 (327)
|+||.+. . ++.++... . ......- . ..+ +. .........|||||+||+.+++++ +.
T Consensus 342 ~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~la~al-~~ 420 (510)
T PRK15439 342 YLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVLIAKCL-EA 420 (510)
T ss_pred ECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHHHHHHHHH-hh
Confidence 9998631 1 11121100 0 0000000 0 001 10 001111234999999999999999 88
Q ss_pred CCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 285 EPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 285 ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
+|.++|+|+| ...+.+.+++.++..
T Consensus 421 ~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~ 451 (510)
T PRK15439 421 SPQLLIVDEPTRGVDVSARNDIYQLIRSIAA 451 (510)
T ss_pred CCCEEEECCCCcCcChhHHHHHHHHHHHHHh
Confidence 9999999965 355556666666654
|
|
| >TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.4e-16 Score=153.08 Aligned_cols=123 Identities=20% Similarity=0.280 Sum_probs=83.5
Q ss_pred EEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcceeeEEEEEEEccCCC----eEEe
Q 020346 164 IVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGG----YLAD 239 (327)
Q Consensus 164 lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~tt~~i~~v~q~~~~----~i~D 239 (327)
|+|+||||||||+++|+| +++|++|+|+++|.++...+. ..++++|++|.+.. ++.+
T Consensus 1 l~G~nGsGKSTLl~~iaG------------l~~p~~G~I~i~g~~i~~~~~-------~~~~i~~v~q~~~l~~~~tv~e 61 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAG------------FEQPDSGSIMLDGEDVTNVPP-------HLRHINMVFQSYALFPHMTVEE 61 (325)
T ss_pred CcCCCCCCHHHHHHHHHC------------CCCCCceEEEECCEECCCCCH-------HHCCEEEEecCccccCCCcHHH
Confidence 689999999999999999 899999999999998765432 24578999997532 3333
Q ss_pred CcccCCc--cc-------------cccCHhHHhhhhHHHHHhcCccccccccccccccccCCceEEcccH------HHHH
Q 020346 240 TPGFNQP--SL-------------LKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDW------ERYQ 298 (327)
Q Consensus 240 tpg~~~~--~l-------------~~~~~~~l~~~~~~~~~~LSgGq~q~~~~~~~~h~~ep~~~v~~~~------~r~~ 298 (327)
+..+... .. +.+......+.. ...|||||+||+++++++ +.+|.++++|+| ...+
T Consensus 62 nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---~~~LSgGq~qRvalaraL-~~~p~lllLDEP~s~LD~~~~~ 137 (325)
T TIGR01187 62 NVAFGLKMRKVPRAEIKPRVLEALRLVQLEEFADRK---PHQLSGGQQQRVALARAL-VFKPKILLLDEPLSALDKKLRD 137 (325)
T ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHcCCcchhcCC---hhhCCHHHHHHHHHHHHH-HhCCCEEEEeCCCccCCHHHHH
Confidence 3322110 00 000001111111 234999999999999999 999999999965 4445
Q ss_pred HHHHHHHHHHH
Q 020346 299 YYFQLLDEIRI 309 (327)
Q Consensus 299 ~~~~ll~e~~~ 309 (327)
.+.++++++..
T Consensus 138 ~l~~~l~~l~~ 148 (325)
T TIGR01187 138 QMQLELKTIQE 148 (325)
T ss_pred HHHHHHHHHHH
Confidence 55566666543
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included). |
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.8e-16 Score=162.18 Aligned_cols=130 Identities=15% Similarity=0.119 Sum_probs=91.4
Q ss_pred CCceeeccCc-chhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccc
Q 020346 136 GYEPLFCSVE-SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (327)
Q Consensus 136 ~~~~~~~s~~-~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s 213 (327)
.++.++++|+ ++.+++++++.+ +|++++|+|+||||||||+++|+| +++|++|+|.+++
T Consensus 6 ~~~nls~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G------------~~~p~~G~i~~~~------- 66 (552)
T TIGR03719 6 TMNRVSKVVPPKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAG------------VDKEFNGEARPAP------- 66 (552)
T ss_pred EEeeEEEecCCCCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhC------------CCCCCCceEEecC-------
Confidence 3567888887 667999999998 899999999999999999999999 8899999998863
Q ss_pred ccCCCcceeeEEEEEEEccCCC----eEEeCcccCCcc----------------ccccC-------------------H-
Q 020346 214 TKSGRGKHTTRHVSLLPLSGGG----YLADTPGFNQPS----------------LLKVT-------------------K- 253 (327)
Q Consensus 214 ~~~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~~----------------l~~~~-------------------~- 253 (327)
...++|++|.+.. ++.|+..+.... ..... .
T Consensus 67 ---------~~~i~~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (552)
T TIGR03719 67 ---------GIKVGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAW 137 (552)
T ss_pred ---------CCEEEEEeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcc
Confidence 1258899997522 233332211000 00000 0
Q ss_pred ---hHHhhh--------hHHHHHhcCccccccccccccccccCCceEEcccH
Q 020346 254 ---QSLAQT--------FPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDW 294 (327)
Q Consensus 254 ---~~l~~~--------~~~~~~~LSgGq~q~~~~~~~~h~~ep~~~v~~~~ 294 (327)
..+... .......|||||+||+.+++++ +.+|+++|+|+|
T Consensus 138 ~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkqrv~la~al-~~~p~lLLLDEP 188 (552)
T TIGR03719 138 DLDRKLEIAMDALRCPPWDADVTKLSGGERRRVALCRLL-LSKPDMLLLDEP 188 (552)
T ss_pred hhHHHHHHHHhhCCCCcccCchhhcCHHHHHHHHHHHHH-hcCCCEEEEcCC
Confidence 000000 0112235999999999999999 899999999965
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.1e-16 Score=161.78 Aligned_cols=142 Identities=18% Similarity=0.172 Sum_probs=95.1
Q ss_pred CceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccccc
Q 020346 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (327)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~ 215 (327)
++.+.++|++..+++++++.+ +|++++|+|+||||||||+++|+| +.+|++|+|++++.
T Consensus 325 ~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G------------~~~p~~G~i~~~~~-------- 384 (552)
T TIGR03719 325 AENLSKGFGDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITG------------QEQPDSGTIKIGET-------- 384 (552)
T ss_pred EeeEEEEECCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcC------------CCCCCCeEEEECCc--------
Confidence 345667777777999999998 999999999999999999999999 88999999988431
Q ss_pred CCCcceeeEEEEEEEccCC-----CeEEeCcccCCc--cccccC--HhHHhhh--h-----HHHHHhcCccccccccccc
Q 020346 216 SGRGKHTTRHVSLLPLSGG-----GYLADTPGFNQP--SLLKVT--KQSLAQT--F-----PEIKEMLKANEPAKCSFNN 279 (327)
Q Consensus 216 ~~~g~~tt~~i~~v~q~~~-----~~i~Dtpg~~~~--~l~~~~--~~~l~~~--~-----~~~~~~LSgGq~q~~~~~~ 279 (327)
..++|++|.+. .++.++..+... ...... ...+... + ......|||||+||+.|++
T Consensus 385 --------~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~ 456 (552)
T TIGR03719 385 --------VKLAYVDQSRDALDPNKTVWEEISGGLDIIQLGKREVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAK 456 (552)
T ss_pred --------eEEEEEeCCccccCCCCcHHHHHHhhccccccCcchHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHH
Confidence 14788888631 122222111100 000000 0001110 0 1112349999999999999
Q ss_pred cccccCCceEEcccH------HHHHHHHHHHHHH
Q 020346 280 CLHLGEPGCVVKGDW------ERYQYYFQLLDEI 307 (327)
Q Consensus 280 ~~h~~ep~~~v~~~~------~r~~~~~~ll~e~ 307 (327)
++ +.+|.++|+|+| ...+.+.+++.++
T Consensus 457 al-~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~ 489 (552)
T TIGR03719 457 TL-KSGGNVLLLDEPTNDLDVETLRALEEALLEF 489 (552)
T ss_pred HH-hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHC
Confidence 99 999999999965 3445555555543
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >COG1161 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.61 E-value=6.5e-15 Score=141.38 Aligned_cols=142 Identities=32% Similarity=0.514 Sum_probs=109.2
Q ss_pred ccccccEEEEEeecCCCCCChH-HHHHHHHHHHhcCCCEEEEeecCCCCcHHHHHHHHhhhhhc-CCceeeccCcchhhH
Q 020346 73 PVANVDHLLLLFSMDQPKLEPF-ALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW-GYEPLFCSVESKLGL 150 (327)
Q Consensus 73 ~~anvD~lliv~~~~~p~~~~~-~l~r~L~~a~~~~~~~~ivlnK~Dl~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~l 150 (327)
.+..+|.++.|.++..|..+.. .+++++ .+++.++|+||.||++.....+|...+.+- +...+..+.......
T Consensus 31 ~~~~~d~vvevvDar~P~~s~~~~l~~~v-----~~k~~i~vlNK~DL~~~~~~~~W~~~~~~~~~~~~~~v~~~~~~~~ 105 (322)
T COG1161 31 VLKSVDVVVEVVDARDPLGTRNPELERIV-----KEKPKLLVLNKADLAPKEVTKKWKKYFKKEEGIKPIFVSAKSRQGG 105 (322)
T ss_pred hcccCCEEEEEEeccccccccCccHHHHH-----ccCCcEEEEehhhcCCHHHHHHHHHHHHhcCCCccEEEEeecccCc
Confidence 5789999999999999865544 678876 467779999999999999999999888765 566666655433332
Q ss_pred HHHH--------hh---c--CC-----CEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccc
Q 020346 151 DSLL--------QR---L--RD-----QTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV 212 (327)
Q Consensus 151 ~~l~--------~~---l--~g-----~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~ 212 (327)
..+. .. + .| ..++|||.|+||||||||.|+|.. ...+
T Consensus 106 ~~i~~~~~~~~~~~i~~~~~~~~~~~~~~v~vvG~PNVGKSslIN~L~~k~-------------------------~~~~ 160 (322)
T COG1161 106 KKIRKALEKLSEEKIKRLKKKGLLKRKIRVGVVGYPNVGKSTLINRLLGKK-------------------------VAKT 160 (322)
T ss_pred cchHHHHHHHHHHHHHHHhhcCCCccceEEEEEcCCCCcHHHHHHHHhccc-------------------------ceee
Confidence 2222 11 1 22 689999999999999999999943 2344
Q ss_pred cccCCCcceeeEEEEEEEccCCCeEEeCcccCCccc
Q 020346 213 STKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSL 248 (327)
Q Consensus 213 s~~~~~g~~tt~~i~~v~q~~~~~i~Dtpg~~~~~l 248 (327)
+..+| +|++.++++...+.+++||||+..+..
T Consensus 161 s~~PG----~Tk~~q~i~~~~~i~LlDtPGii~~~~ 192 (322)
T COG1161 161 SNRPG----TTKGIQWIKLDDGIYLLDTPGIIPPKF 192 (322)
T ss_pred CCCCc----eecceEEEEcCCCeEEecCCCcCCCCc
Confidence 44555 999999999999999999999987654
|
|
| >cd04178 Nucleostemin_like Nucleostemin-like | Back alignment and domain information |
|---|
Probab=99.60 E-value=2e-14 Score=126.20 Aligned_cols=136 Identities=29% Similarity=0.356 Sum_probs=89.9
Q ss_pred cEEEEEeecCCCCCC-hHHHHHHHHHHHhcCCCEEEEeecCCCCcHHHHHHHHhhhhhcCCceeeccCcc----------
Q 020346 78 DHLLLLFSMDQPKLE-PFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVES---------- 146 (327)
Q Consensus 78 D~lliv~~~~~p~~~-~~~l~r~L~~a~~~~~~~~ivlnK~Dl~~~~~~~~~~~~~~~~~~~~~~~s~~~---------- 146 (327)
|.++.|.++..|..+ ...+.+++. ....++|.++|+||+||++++....|...+........+.+...
T Consensus 1 DvVl~VvDar~p~~~~~~~i~~~~~-l~~~~kp~IlVlNK~DL~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (172)
T cd04178 1 DVILEVLDARDPLGCRCPQVEEAVL-QAGGNKKLVLVLNKIDLVPKENVEKWLKYLRREFPTVAFKASTQSQKKNLGQKS 79 (172)
T ss_pred CEEEEEEECCCCCCCCCHHHHHHHH-hccCCCCEEEEEehhhcCCHHHHHHHHHHHHhhCCEEEEEecccccccchhhcc
Confidence 789999999887443 234555432 23457899999999999998888888888766432222211110
Q ss_pred ---------------hhhHHHHH---hhc--C-----CCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccc
Q 020346 147 ---------------KLGLDSLL---QRL--R-----DQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGS 201 (327)
Q Consensus 147 ---------------~~~l~~l~---~~l--~-----g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~ 201 (327)
..+.+.+. ... + .-.++++|.||+|||||+|+|.|..
T Consensus 80 ~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~vG~pnvGKSslin~l~~~~------------------ 141 (172)
T cd04178 80 VKVEAASADLLRSSVCFGADCLLKLLKNYSRNKDIKTSITVGVVGFPNVGKSSLINSLKRSR------------------ 141 (172)
T ss_pred cccchhhhhhhhhccccCHHHHHHHHHHHhhccccccCcEEEEEcCCCCCHHHHHHHHhCcc------------------
Confidence 00011111 111 1 2489999999999999999999933
Q ss_pred eeecceeeccccccCCCcceeeEEEEEEEccCCCeEEeCccc
Q 020346 202 KWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGF 243 (327)
Q Consensus 202 i~~~g~~v~~~s~~~~~g~~tt~~i~~v~q~~~~~i~Dtpg~ 243 (327)
...++..+| +|++..+++.+.+.+++||||+
T Consensus 142 -------~~~~~~~pg----~T~~~~~~~~~~~~~l~DtPGi 172 (172)
T cd04178 142 -------ACNVGATPG----VTKSMQEVHLDKKVKLLDSPGI 172 (172)
T ss_pred -------cceecCCCC----eEcceEEEEeCCCEEEEECcCC
Confidence 122333334 8888888888777889999996
|
Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the |
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.5e-16 Score=162.23 Aligned_cols=135 Identities=18% Similarity=0.165 Sum_probs=90.4
Q ss_pred eeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCC
Q 020346 140 LFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGR 218 (327)
Q Consensus 140 ~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~ 218 (327)
++++|++. .++++++.+ +|++++|+|+||+|||||+++|+| +.+|++|+|.++ .
T Consensus 346 ls~~~~~~-~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~G------------l~~p~~G~I~~~-~----------- 400 (590)
T PRK13409 346 LTKKLGDF-SLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAG------------VLKPDEGEVDPE-L----------- 400 (590)
T ss_pred eEEEECCE-EEEecceEECCCCEEEEECCCCCCHHHHHHHHhC------------CCCCCceEEEEe-e-----------
Confidence 44445432 377788877 899999999999999999999999 889999999875 1
Q ss_pred cceeeEEEEEEEccCC----CeEEeCcccCCc----------cccccCHhHHhhhhHHHHHhcCcccccccccccccccc
Q 020346 219 GKHTTRHVSLLPLSGG----GYLADTPGFNQP----------SLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLG 284 (327)
Q Consensus 219 g~~tt~~i~~v~q~~~----~~i~Dtpg~~~~----------~l~~~~~~~l~~~~~~~~~~LSgGq~q~~~~~~~~h~~ 284 (327)
.++|+||... .++.|+..+... .++.+...+..+.. ...|||||+||+++++++ +.
T Consensus 401 ------~i~y~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~---~~~LSGGe~QRvaiAraL-~~ 470 (590)
T PRK13409 401 ------KISYKPQYIKPDYDGTVEDLLRSITDDLGSSYYKSEIIKPLQLERLLDKN---VKDLSGGELQRVAIAACL-SR 470 (590)
T ss_pred ------eEEEecccccCCCCCcHHHHHHHHhhhcChHHHHHHHHHHCCCHHHHhCC---cccCCHHHHHHHHHHHHH-hc
Confidence 3677777642 122222111100 01111111112222 234999999999999999 99
Q ss_pred CCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 285 EPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 285 ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
+|+++|+|+| .......++++++..
T Consensus 471 ~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~ 501 (590)
T PRK13409 471 DADLYLLDEPSAHLDVEQRLAVAKAIRRIAE 501 (590)
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHHHH
Confidence 9999999965 355555566666644
|
|
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.7e-16 Score=161.10 Aligned_cols=139 Identities=18% Similarity=0.146 Sum_probs=94.6
Q ss_pred CceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccccc
Q 020346 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (327)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~ 215 (327)
++.+.++|+++.+++++++.+ +|++++|+|+||||||||+++|+| +.+|++|+|++++.
T Consensus 327 ~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G------------~~~p~~G~i~~~~~-------- 386 (556)
T PRK11819 327 AENLSKSFGDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITG------------QEQPDSGTIKIGET-------- 386 (556)
T ss_pred EEeEEEEECCeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhC------------CCCCCCeEEEECCc--------
Confidence 345566777777999999998 999999999999999999999999 88999999988431
Q ss_pred CCCcceeeEEEEEEEccC-C----CeEEeCcccCCc--c-----------ccccCHh-HHhhhhHHHHHhcCcccccccc
Q 020346 216 SGRGKHTTRHVSLLPLSG-G----GYLADTPGFNQP--S-----------LLKVTKQ-SLAQTFPEIKEMLKANEPAKCS 276 (327)
Q Consensus 216 ~~~g~~tt~~i~~v~q~~-~----~~i~Dtpg~~~~--~-----------l~~~~~~-~l~~~~~~~~~~LSgGq~q~~~ 276 (327)
..++|+||.. . .++.++..+... . +..+... ..... ....|||||+||+.
T Consensus 387 --------~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---~~~~LSgG~~qrv~ 455 (556)
T PRK11819 387 --------VKLAYVDQSRDALDPNKTVWEEISGGLDIIKVGNREIPSRAYVGRFNFKGGDQQK---KVGVLSGGERNRLH 455 (556)
T ss_pred --------eEEEEEeCchhhcCCCCCHHHHHHhhcccccccccHHHHHHHHHhCCCChhHhcC---chhhCCHHHHHHHH
Confidence 1478888863 1 122222211100 0 0001110 00111 12349999999999
Q ss_pred ccccccccCCceEEcccH------HHHHHHHHHHHHH
Q 020346 277 FNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEI 307 (327)
Q Consensus 277 ~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~ 307 (327)
|++++ +.+|.++|+|+| ...+.+.+++.++
T Consensus 456 la~al-~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~ 491 (556)
T PRK11819 456 LAKTL-KQGGNVLLLDEPTNDLDVETLRALEEALLEF 491 (556)
T ss_pred HHHHH-hcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC
Confidence 99999 999999999965 3444444555543
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.2e-16 Score=162.95 Aligned_cols=140 Identities=15% Similarity=0.210 Sum_probs=93.3
Q ss_pred ceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccC
Q 020346 138 EPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKS 216 (327)
Q Consensus 138 ~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~ 216 (327)
+.+.++|++..+++++++.+ +|++++|+|+||||||||+++|+| +++|++|+|++ |..
T Consensus 323 ~~l~~~~~~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G------------~~~p~~G~i~~-~~~-------- 381 (635)
T PRK11147 323 ENVNYQIDGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLG------------QLQADSGRIHC-GTK-------- 381 (635)
T ss_pred eeeEEEECCeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhC------------CCCCCCcEEEE-CCC--------
Confidence 45677777777899999998 999999999999999999999999 88999999987 322
Q ss_pred CCcceeeEEEEEEEccCC-----CeEEeCcccCCccc--ccc--CHhHHhhh--h-----HHHHHhcCcccccccccccc
Q 020346 217 GRGKHTTRHVSLLPLSGG-----GYLADTPGFNQPSL--LKV--TKQSLAQT--F-----PEIKEMLKANEPAKCSFNNC 280 (327)
Q Consensus 217 ~~g~~tt~~i~~v~q~~~-----~~i~Dtpg~~~~~l--~~~--~~~~l~~~--~-----~~~~~~LSgGq~q~~~~~~~ 280 (327)
..++|++|... .++.++..+..... ... ....+... + ......|||||+||+.|+++
T Consensus 382 -------~~i~y~~q~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~a 454 (635)
T PRK11147 382 -------LEVAYFDQHRAELDPEKTVMDNLAEGKQEVMVNGRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARL 454 (635)
T ss_pred -------cEEEEEeCcccccCCCCCHHHHHHhhcccccccchHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHH
Confidence 14777887531 12223222111000 000 00011110 1 11123499999999999998
Q ss_pred ccccCCceEEcccH------HHHHHHHHHHHH
Q 020346 281 LHLGEPGCVVKGDW------ERYQYYFQLLDE 306 (327)
Q Consensus 281 ~h~~ep~~~v~~~~------~r~~~~~~ll~e 306 (327)
+ +.+|.++|+|+| ...+.+.+++++
T Consensus 455 l-~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~ 485 (635)
T PRK11147 455 F-LKPSNLLILDEPTNDLDVETLELLEELLDS 485 (635)
T ss_pred H-hcCCCEEEEcCCCCCCCHHHHHHHHHHHHh
Confidence 8 899999999965 344444444444
|
|
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.59 E-value=5e-16 Score=169.52 Aligned_cols=150 Identities=19% Similarity=0.235 Sum_probs=113.0
Q ss_pred cCCceeeccCcc--hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecc
Q 020346 135 WGYEPLFCSVES--KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (327)
Q Consensus 135 ~~~~~~~~s~~~--~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~ 211 (327)
+.|+.+.++|.. +.+|++|++.+ +|+.+||||++|||||||+++|.+ +.+|.+|+|.|||.++.+
T Consensus 1139 I~f~~~~~RYrp~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFR------------l~e~~~G~I~IDgvdI~~ 1206 (1381)
T KOG0054|consen 1139 IEFEDLSLRYRPNLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFR------------LVEPAEGEILIDGVDISK 1206 (1381)
T ss_pred EEEEEeEEEeCCCCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHH------------hcCccCCeEEEcCeeccc
Confidence 567888999965 48999999998 899999999999999999999999 999999999999999999
Q ss_pred ccccCCCcceeeEEEEEEEccC---CCeEEeCcccCCccccccCHhHHhhhhHHH--------------------HHhcC
Q 020346 212 VSTKSGRGKHTTRHVSLLPLSG---GGYLADTPGFNQPSLLKVTKQSLAQTFPEI--------------------KEMLK 268 (327)
Q Consensus 212 ~s~~~~~g~~tt~~i~~v~q~~---~~~i~Dtpg~~~~~l~~~~~~~l~~~~~~~--------------------~~~LS 268 (327)
++.++ .+++++.+||++ .+++..+ --..+..+.+++++..+.. -+.+|
T Consensus 1207 igL~d-----LRsrlsIIPQdPvLFsGTvR~N----LDPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~S 1277 (1381)
T KOG0054|consen 1207 IGLHD-----LRSRLSIIPQDPVLFSGTVRFN----LDPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFS 1277 (1381)
T ss_pred ccHHH-----HHhcCeeeCCCCceecCccccc----cCcccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCC
Confidence 99877 789999999975 2222222 1111111112222111110 12389
Q ss_pred ccccccccccccccccCCceEEcc------cHHHHHHHHHHHHH
Q 020346 269 ANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDE 306 (327)
Q Consensus 269 gGq~q~~~~~~~~h~~ep~~~v~~------~~~r~~~~~~ll~e 306 (327)
-||+|-+.+++++ +...+++|+| |++--...++.+++
T Consensus 1278 vGQRQLlCLARAL-Lr~skILvLDEATAsVD~~TD~lIQ~tIR~ 1320 (1381)
T KOG0054|consen 1278 VGQRQLLCLARAL-LRKSKILVLDEATASVDPETDALIQKTIRE 1320 (1381)
T ss_pred hHHHHHHHHHHHH-hccCCEEEEecccccCChHHHHHHHHHHHH
Confidence 9999999999999 9999999999 44555555555544
|
|
| >TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.9e-16 Score=162.88 Aligned_cols=131 Identities=19% Similarity=0.256 Sum_probs=92.2
Q ss_pred cCCceeeccCc-chhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccc
Q 020346 135 WGYEPLFCSVE-SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV 212 (327)
Q Consensus 135 ~~~~~~~~s~~-~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~ 212 (327)
+.++.+.++|. +..+++++++.+ +|++++|+||||||||||+++|+| +++|++|+|.+++
T Consensus 452 i~~~nv~~~~~~~~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~G------------l~~~~~G~i~~~~------ 513 (659)
T TIGR00954 452 IKFENIPLVTPNGDVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGE------------LWPVYGGRLTKPA------ 513 (659)
T ss_pred EEEEeeEEECCCCCeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhC------------CCCCCCCeEeecC------
Confidence 45677888884 447899999998 999999999999999999999999 8999999987642
Q ss_pred cccCCCcceeeEEEEEEEccCC---CeEEeCcccCCcc----ccccCHhHHhhh-----hHHH-------------HHhc
Q 020346 213 STKSGRGKHTTRHVSLLPLSGG---GYLADTPGFNQPS----LLKVTKQSLAQT-----FPEI-------------KEML 267 (327)
Q Consensus 213 s~~~~~g~~tt~~i~~v~q~~~---~~i~Dtpg~~~~~----l~~~~~~~l~~~-----~~~~-------------~~~L 267 (327)
+..++++||++. .++.|+..+.... ......+++.+. ..++ ...|
T Consensus 514 ----------~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~L 583 (659)
T TIGR00954 514 ----------KGKLFYVPQRPYMTLGTLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVL 583 (659)
T ss_pred ----------CCcEEEECCCCCCCCcCHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCC
Confidence 236889999752 2333333221100 000011111100 0010 1359
Q ss_pred CccccccccccccccccCCceEEcccH
Q 020346 268 KANEPAKCSFNNCLHLGEPGCVVKGDW 294 (327)
Q Consensus 268 SgGq~q~~~~~~~~h~~ep~~~v~~~~ 294 (327)
||||+||+++++++ +++|.++++|||
T Consensus 584 SgGqkQRl~iARal-~~~p~illLDEp 609 (659)
T TIGR00954 584 SGGEKQRIAMARLF-YHKPQFAILDEC 609 (659)
T ss_pred CHHHHHHHHHHHHH-HcCCCEEEEeCC
Confidence 99999999999999 999999999965
|
|
| >PRK13546 teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=7.3e-16 Score=143.99 Aligned_cols=134 Identities=18% Similarity=0.191 Sum_probs=84.7
Q ss_pred hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcceeeEE
Q 020346 147 KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRH 225 (327)
Q Consensus 147 ~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~tt~~ 225 (327)
..+++++++.+ +|++++|+|+||+|||||+++|+| +++|++|+|.++|... .....
T Consensus 37 ~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~G------------l~~p~~G~I~~~g~~~-~~~~~---------- 93 (264)
T PRK13546 37 FFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGG------------SLSPTVGKVDRNGEVS-VIAIS---------- 93 (264)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhC------------CcCCCceEEEECCEEe-EEecc----------
Confidence 45788999998 999999999999999999999999 8899999999988521 11100
Q ss_pred EEEEEccCCCeEEeCcccCCccccccCHhH-------------HhhhhHHHHHhcCccccccccccccccccCCceEEcc
Q 020346 226 VSLLPLSGGGYLADTPGFNQPSLLKVTKQS-------------LAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG 292 (327)
Q Consensus 226 i~~v~q~~~~~i~Dtpg~~~~~l~~~~~~~-------------l~~~~~~~~~~LSgGq~q~~~~~~~~h~~ep~~~v~~ 292 (327)
..+ .+..++.++..+... ........ +..........||+||+||+.+++++ +.+|.++++|
T Consensus 94 ~~~---~~~~tv~enl~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~Laral-~~~p~iLlLD 168 (264)
T PRK13546 94 AGL---SGQLTGIENIEFKML-CMGFKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINI-TVNPDILVID 168 (264)
T ss_pred cCC---CCCCcHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHH-hhCCCEEEEe
Confidence 000 011122222211000 00000000 00001111234999999999999999 9999999999
Q ss_pred cH------HHHHHHHHHHHHHH
Q 020346 293 DW------ERYQYYFQLLDEIR 308 (327)
Q Consensus 293 ~~------~r~~~~~~ll~e~~ 308 (327)
+| ...+.+.+++.++.
T Consensus 169 EPt~gLD~~~~~~l~~~L~~~~ 190 (264)
T PRK13546 169 EALSVGDQTFAQKCLDKIYEFK 190 (264)
T ss_pred CccccCCHHHHHHHHHHHHHHH
Confidence 65 34455556666654
|
|
| >KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.58 E-value=7e-15 Score=144.92 Aligned_cols=163 Identities=26% Similarity=0.361 Sum_probs=124.7
Q ss_pred CceEEeeecccccccccc---ccccccEEEEEeecCCCC-CChHHHHHHHHHHHhcCCCEEEEeecCCCCcHHHHHHHHh
Q 020346 55 RRGMIENVFQRSTEILDP---PVANVDHLLLLFSMDQPK-LEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKS 130 (327)
Q Consensus 55 ~~~~i~~i~~R~~~l~r~---~~anvD~lliv~~~~~p~-~~~~~l~r~L~~a~~~~~~~~ivlnK~Dl~~~~~~~~~~~ 130 (327)
+...+...++|.-+++|. .++-.|+|++++++.+|. |.+..|++|...... .+..++++||+||.++++...|..
T Consensus 150 ~e~l~lTpFErNLE~WRQLWRVlErSDivvqIVDARnPllfr~~dLe~Yvke~d~-~K~~~LLvNKaDLl~~~qr~aWa~ 228 (562)
T KOG1424|consen 150 NEKLVLTPFERNLEIWRQLWRVLERSDIVVQIVDARNPLLFRSPDLEDYVKEVDP-SKANVLLVNKADLLPPEQRVAWAE 228 (562)
T ss_pred cCCeeechhhhCHHHHHHHHHHHhhcceEEEEeecCCccccCChhHHHHHhcccc-ccceEEEEehhhcCCHHHHHHHHH
Confidence 345677888988888875 689999999999999995 456689999865443 467799999999999999999999
Q ss_pred hhhhcCCceeeccCcc------h-------hhHHHHHhh----------------------------------c------
Q 020346 131 RLHTWGYEPLFCSVES------K-------LGLDSLLQR----------------------------------L------ 157 (327)
Q Consensus 131 ~~~~~~~~~~~~s~~~------~-------~~l~~l~~~----------------------------------l------ 157 (327)
+|.+-.+.++++|+.. . ...++++.. +
T Consensus 229 YF~~~ni~~vf~SA~~at~~~~~~~~~e~~r~~d~~~~~~~~~~~~~~d~~i~r~~~d~~e~~~v~~~~~~s~~~~~~t~ 308 (562)
T KOG1424|consen 229 YFRQNNIPVVFFSALAATEQLESKVLKEDRRSLDGVSRALGAIFVGEVDLKIARDKGDGEEIEDVEQLRLISAMEPTPTG 308 (562)
T ss_pred HHHhcCceEEEEecccccccccccchhhhhhcccchhhhccccccccchhhhhhhcccccchhhHHhhhhhhccccCCCC
Confidence 9988777888777632 0 111111100 0
Q ss_pred ---C-CCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcceeeEEEEEEEccC
Q 020346 158 ---R-DQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSG 233 (327)
Q Consensus 158 ---~-g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~tt~~i~~v~q~~ 233 (327)
+ -.++++||-|||||||+||+|+|. +...+|..+| -|+|++-+++.+
T Consensus 309 ~~~~~~vtVG~VGYPNVGKSSTINaLvG~-------------------------KkVsVS~TPG----kTKHFQTi~ls~ 359 (562)
T KOG1424|consen 309 ERYKDVVTVGFVGYPNVGKSSTINALVGR-------------------------KKVSVSSTPG----KTKHFQTIFLSP 359 (562)
T ss_pred cCCCceeEEEeecCCCCchhHHHHHHhcC-------------------------ceeeeecCCC----CcceeEEEEcCC
Confidence 0 048999999999999999999993 3345666677 678888899999
Q ss_pred CCeEEeCcccCCcc
Q 020346 234 GGYLADTPGFNQPS 247 (327)
Q Consensus 234 ~~~i~Dtpg~~~~~ 247 (327)
+..+.|+||+..+.
T Consensus 360 ~v~LCDCPGLVfPS 373 (562)
T KOG1424|consen 360 SVCLCDCPGLVFPS 373 (562)
T ss_pred CceecCCCCccccC
Confidence 99999999987664
|
|
| >PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.7e-16 Score=157.34 Aligned_cols=147 Identities=14% Similarity=0.128 Sum_probs=93.8
Q ss_pred CCceeeccCcc---hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecc
Q 020346 136 GYEPLFCSVES---KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (327)
Q Consensus 136 ~~~~~~~s~~~---~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~ 211 (327)
.++.++++|.+ +.+++++++.+ +|++++|+|+||+|||||+++|+| +++|++|+|+++|.+..
T Consensus 23 ~lknL~~~~~~~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaG------------Ll~P~sGeI~I~G~~~~- 89 (549)
T PRK13545 23 KLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAG------------VTMPNKGTVDIKGSAAL- 89 (549)
T ss_pred EEEEEEEecCCCccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhC------------CCCCCceEEEECCEeee-
Confidence 45667777765 35899999998 999999999999999999999999 88999999999986521
Q ss_pred ccccCCCcceeeEEEEEEEccCCCeEEeCcccCC--ccc--cc--------cCHhHHhhhhHHHHHhcCccccccccccc
Q 020346 212 VSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQ--PSL--LK--------VTKQSLAQTFPEIKEMLKANEPAKCSFNN 279 (327)
Q Consensus 212 ~s~~~~~g~~tt~~i~~v~q~~~~~i~Dtpg~~~--~~l--~~--------~~~~~l~~~~~~~~~~LSgGq~q~~~~~~ 279 (327)
+ .....+.+ ..++.++..+.. ... .. ++...+..........|||||+||+++++
T Consensus 90 i----------~~~~~l~~---~lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRVaLAr 156 (549)
T PRK13545 90 I----------AISSGLNG---QLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAI 156 (549)
T ss_pred E----------EeccccCC---CCcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCChhHhhCCcccCCHHHHHHHHHHH
Confidence 0 00111111 122222221100 000 00 00000111111112349999999999999
Q ss_pred cccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 280 CLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 280 ~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
++ +.+|.++|+|+| ...+.+.+++.++..
T Consensus 157 AL-~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~ 191 (549)
T PRK13545 157 SV-HINPDILVIDEALSVGDQTFTKKCLDKMNEFKE 191 (549)
T ss_pred HH-HhCCCEEEEECCcccCCHHHHHHHHHHHHHHHh
Confidence 99 899999999965 344455566666543
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=8.1e-16 Score=159.99 Aligned_cols=141 Identities=18% Similarity=0.203 Sum_probs=92.7
Q ss_pred ceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccC
Q 020346 138 EPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKS 216 (327)
Q Consensus 138 ~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~ 216 (327)
+.+.++|++..+++++++.+ +|++++|+||||||||||+++|+| +.+|++|+|++++.
T Consensus 316 ~~l~~~y~~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G------------~~~p~~G~i~~~~~--------- 374 (638)
T PRK10636 316 EKVSAGYGDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAG------------ELAPVSGEIGLAKG--------- 374 (638)
T ss_pred EeeEEEeCCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhC------------CCCCCCCeEEECCC---------
Confidence 34566777777899999998 999999999999999999999999 88999999998521
Q ss_pred CCcceeeEEEEEEEccCC--CeEEeCcc--cC--CccccccCHhHHhhh--h-H----HHHHhcCccccccccccccccc
Q 020346 217 GRGKHTTRHVSLLPLSGG--GYLADTPG--FN--QPSLLKVTKQSLAQT--F-P----EIKEMLKANEPAKCSFNNCLHL 283 (327)
Q Consensus 217 ~~g~~tt~~i~~v~q~~~--~~i~Dtpg--~~--~~~l~~~~~~~l~~~--~-~----~~~~~LSgGq~q~~~~~~~~h~ 283 (327)
..++|++|... .....++. +. ......-....+... + + .....|||||+||+.+++++ +
T Consensus 375 -------~~igy~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l-~ 446 (638)
T PRK10636 375 -------IKLGYFAQHQLEFLRADESPLQHLARLAPQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIV-W 446 (638)
T ss_pred -------EEEEEecCcchhhCCccchHHHHHHHhCchhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHH-h
Confidence 24778887521 11101110 00 000000000011110 1 1 11244999999999999998 8
Q ss_pred cCCceEEcccH------HHHHHHHHHHHHH
Q 020346 284 GEPGCVVKGDW------ERYQYYFQLLDEI 307 (327)
Q Consensus 284 ~ep~~~v~~~~------~r~~~~~~ll~e~ 307 (327)
.+|.++|+|+| ...+.+.+++.++
T Consensus 447 ~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~ 476 (638)
T PRK10636 447 QRPNLLLLDEPTNHLDLDMRQALTEALIDF 476 (638)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHHHHHc
Confidence 99999999965 3444555555443
|
|
| >cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.58 E-value=4.7e-16 Score=137.01 Aligned_cols=120 Identities=16% Similarity=0.154 Sum_probs=81.8
Q ss_pred chhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcceeeE
Q 020346 146 SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTR 224 (327)
Q Consensus 146 ~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~tt~ 224 (327)
...+++++++.+ +|++++|+||||||||||+|+|++ ++|++.+++... .. .+.
T Consensus 7 ~~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~----------------~~G~v~~~~~~~-~~---------~~~ 60 (176)
T cd03238 7 NVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY----------------ASGKARLISFLP-KF---------SRN 60 (176)
T ss_pred eeeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHhh----------------cCCcEEECCccc-cc---------ccc
Confidence 356789999998 899999999999999999999864 478888765421 11 122
Q ss_pred EEEEEEccCCCeEEeCcccCCccccccCHhHH-hhhhHHHHHhcCccccccccccccccccC--CceEEcccH------H
Q 020346 225 HVSLLPLSGGGYLADTPGFNQPSLLKVTKQSL-AQTFPEIKEMLKANEPAKCSFNNCLHLGE--PGCVVKGDW------E 295 (327)
Q Consensus 225 ~i~~v~q~~~~~i~Dtpg~~~~~l~~~~~~~l-~~~~~~~~~~LSgGq~q~~~~~~~~h~~e--p~~~v~~~~------~ 295 (327)
.+.+++|. ..++.+..... .... ...||+||+||+++++++ +.+ |+++++|+| .
T Consensus 61 ~~~~~~q~-------------~~l~~~~L~~~~~~~~---~~~LSgGq~qrl~laral-~~~~~p~llLlDEPt~~LD~~ 123 (176)
T cd03238 61 KLIFIDQL-------------QFLIDVGLGYLTLGQK---LSTLSGGELQRVKLASEL-FSEPPGTLFILDEPSTGLHQQ 123 (176)
T ss_pred cEEEEhHH-------------HHHHHcCCCccccCCC---cCcCCHHHHHHHHHHHHH-hhCCCCCEEEEeCCcccCCHH
Confidence 35666651 11222222111 1112 234999999999999999 889 999999965 3
Q ss_pred HHHHHHHHHHHHH
Q 020346 296 RYQYYFQLLDEIR 308 (327)
Q Consensus 296 r~~~~~~ll~e~~ 308 (327)
..+.+.++++++.
T Consensus 124 ~~~~l~~~l~~~~ 136 (176)
T cd03238 124 DINQLLEVIKGLI 136 (176)
T ss_pred HHHHHHHHHHHHH
Confidence 5555556666654
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.6e-15 Score=157.87 Aligned_cols=60 Identities=25% Similarity=0.294 Sum_probs=55.2
Q ss_pred CCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecce
Q 020346 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQ 207 (327)
Q Consensus 136 ~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~ 207 (327)
.++.++++|++..+++++++.+ +|++++|+|+||||||||+|+|+| +++|++|+|++++.
T Consensus 3 ~i~nls~~~g~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G------------~~~pd~G~I~~~~~ 63 (638)
T PRK10636 3 VFSSLQIRRGVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKN------------EISADGGSYTFPGN 63 (638)
T ss_pred EEEEEEEEeCCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhC------------CCCCCCceEEecCC
Confidence 3567889998888999999998 999999999999999999999999 88999999999874
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=7.1e-16 Score=161.98 Aligned_cols=130 Identities=17% Similarity=0.272 Sum_probs=87.4
Q ss_pred CceeeccCcc-hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccc
Q 020346 137 YEPLFCSVES-KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (327)
Q Consensus 137 ~~~~~~s~~~-~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~ 214 (327)
++.+.++|+. ..+++++++.+ +|++++|+|+||||||||+++|+| +.+|++|+|++++
T Consensus 511 ~~~ls~~y~~~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~G------------ll~p~~G~I~~~~-------- 570 (718)
T PLN03073 511 FSDASFGYPGGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISG------------ELQPSSGTVFRSA-------- 570 (718)
T ss_pred EEeeEEEeCCCCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhC------------CCCCCCceEEECC--------
Confidence 3456677753 45899999998 899999999999999999999999 8899999998753
Q ss_pred cCCCcceeeEEEEEEEccC--CCeEEeCcccCCc-cccccCHhHH---hhhh-------HHHHHhcCccccccccccccc
Q 020346 215 KSGRGKHTTRHVSLLPLSG--GGYLADTPGFNQP-SLLKVTKQSL---AQTF-------PEIKEMLKANEPAKCSFNNCL 281 (327)
Q Consensus 215 ~~~~g~~tt~~i~~v~q~~--~~~i~Dtpg~~~~-~l~~~~~~~l---~~~~-------~~~~~~LSgGq~q~~~~~~~~ 281 (327)
...++|++|.. ...+.+++.+... .........+ ...+ ......|||||+||++|++++
T Consensus 571 --------~~~igyv~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL 642 (718)
T PLN03073 571 --------KVRMAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKIT 642 (718)
T ss_pred --------ceeEEEEeccccccCCcchhHHHHHHHhcCCCCHHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHH
Confidence 13578888863 1112222110000 0000001111 1100 001234999999999999998
Q ss_pred cccCCceEEcccHH
Q 020346 282 HLGEPGCVVKGDWE 295 (327)
Q Consensus 282 h~~ep~~~v~~~~~ 295 (327)
+.+|.++|+|+|.
T Consensus 643 -~~~p~lLLLDEPT 655 (718)
T PLN03073 643 -FKKPHILLLDEPS 655 (718)
T ss_pred -hcCCCEEEEcCCC
Confidence 8999999999763
|
|
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.5e-15 Score=146.41 Aligned_cols=128 Identities=23% Similarity=0.333 Sum_probs=94.8
Q ss_pred hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcceeeEE
Q 020346 147 KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRH 225 (327)
Q Consensus 147 ~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~tt~~ 225 (327)
-.+++++++.+ +|++++|||.||||||||-.+|++ +.+++ |+|+|+|+++...+.+.. +..++.
T Consensus 300 ~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allr------------L~~s~-G~I~F~G~~i~~~~~~~m--rplR~~ 364 (534)
T COG4172 300 LRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLR------------LIPSQ-GEIRFDGQDIDGLSRKEM--RPLRRR 364 (534)
T ss_pred eEEeccceeEecCCCeEEEEecCCCCcchHHHHHHh------------hcCcC-ceEEECCccccccChhhh--hhhhhh
Confidence 35788999998 999999999999999999999999 77776 999999999998876543 447889
Q ss_pred EEEEEccCCCeEEeCcc------------cCCccccccCH-h-------------HHhhhhHHHHHhcCccccccccccc
Q 020346 226 VSLLPLSGGGYLADTPG------------FNQPSLLKVTK-Q-------------SLAQTFPEIKEMLKANEPAKCSFNN 279 (327)
Q Consensus 226 i~~v~q~~~~~i~Dtpg------------~~~~~l~~~~~-~-------------~l~~~~~~~~~~LSgGq~q~~~~~~ 279 (327)
++.|+|++-+.+ +|. +..+.+..-+. . .....||.- .||||+||+++|+
T Consensus 365 mQvVFQDPygSL--sPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhE---FSGGQRQRIAIAR 439 (534)
T COG4172 365 MQVVFQDPYGSL--SPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHE---FSGGQRQRIAIAR 439 (534)
T ss_pred ceEEEeCCCCCC--CcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcc---cCcchhhHHHHHH
Confidence 999999873322 111 11111111000 0 112233333 8999999999999
Q ss_pred cccccCCceEEcccHH
Q 020346 280 CLHLGEPGCVVKGDWE 295 (327)
Q Consensus 280 ~~h~~ep~~~v~~~~~ 295 (327)
++ +-+|..+++|+|.
T Consensus 440 Al-iLkP~~i~LDEPT 454 (534)
T COG4172 440 AL-ILKPELILLDEPT 454 (534)
T ss_pred HH-hcCCcEEEecCCc
Confidence 99 8899999999764
|
|
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.2e-16 Score=162.63 Aligned_cols=153 Identities=15% Similarity=0.131 Sum_probs=94.5
Q ss_pred eeccCcc-hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCccccccccccccccee-----------ecc
Q 020346 140 LFCSVES-KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKW-----------FED 206 (327)
Q Consensus 140 ~~~s~~~-~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~-----------~~g 206 (327)
+.++|+. ..+|++++ .+ +|++++|+||||+|||||+|+|+| +++|++|+|. ++|
T Consensus 79 ~~~~yg~~~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G------------~l~p~~G~i~~~~~~~~~~~~~~G 145 (590)
T PRK13409 79 PVHRYGVNGFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSG------------ELIPNLGDYEEEPSWDEVLKRFRG 145 (590)
T ss_pred ceEEecCCceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhC------------CccCCCccccCCCcHHHHHHHhCC
Confidence 5567765 35889998 55 999999999999999999999999 8999999997 888
Q ss_pred eeeccccccCCCc-ceeeEEEEEEEccCCC---eEEeCcccCC------ccccccCHhHHhhhhHHHHHhcCcccccccc
Q 020346 207 QRVGEVSTKSGRG-KHTTRHVSLLPLSGGG---YLADTPGFNQ------PSLLKVTKQSLAQTFPEIKEMLKANEPAKCS 276 (327)
Q Consensus 207 ~~v~~~s~~~~~g-~~tt~~i~~v~q~~~~---~i~Dtpg~~~------~~l~~~~~~~l~~~~~~~~~~LSgGq~q~~~ 276 (327)
.++.........+ .......+++++.+.. .+.|...... ..++.+.+....+. ....|||||+||++
T Consensus 146 ~~l~~~~~~~~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~~~~~~~~~~l~~l~l~~~~~~---~~~~LSgGe~qrv~ 222 (590)
T PRK13409 146 TELQNYFKKLYNGEIKVVHKPQYVDLIPKVFKGKVRELLKKVDERGKLDEVVERLGLENILDR---DISELSGGELQRVA 222 (590)
T ss_pred hHHHHHHHHHhccCcceeecccchhhhhhhhcchHHHHHHhhhHHHHHHHHHHHcCCchhhcC---ChhhCCHHHHHHHH
Confidence 8876543210000 0012223333332211 1111100000 00111111111111 12349999999999
Q ss_pred ccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 277 FNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 277 ~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
++.++ +.+|+++++|+| .....+.++++++.+
T Consensus 223 ia~al-~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~ 260 (590)
T PRK13409 223 IAAAL-LRDADFYFFDEPTSYLDIRQRLNVARLIRELAE 260 (590)
T ss_pred HHHHH-hcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC
Confidence 99998 899999999965 355555566666643
|
|
| >PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=7.4e-16 Score=139.38 Aligned_cols=119 Identities=16% Similarity=0.119 Sum_probs=76.5
Q ss_pred hHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCccccccccccccccee-ecceeeccccccCCCcceeeEEE
Q 020346 149 GLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKW-FEDQRVGEVSTKSGRGKHTTRHV 226 (327)
Q Consensus 149 ~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~-~~g~~v~~~s~~~~~g~~tt~~i 226 (327)
+++++++.+ +|++++|+||||||||||+++|+| +++|++|+|. +++..+. +. ...
T Consensus 2 vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~G------------l~~~~sG~i~~~~~~~~~-~~----------~~~ 58 (213)
T PRK15177 2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCG------------LDAPDEGDFIGLRGDALP-LG----------ANS 58 (213)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhC------------CccCCCCCEEEecCceec-cc----------ccc
Confidence 577889998 899999999999999999999999 8899999997 7765321 10 001
Q ss_pred EEEEccCCCeEEeCcccCCc--cc--ccc-----CHhHHhhhhHHHHHhcCccccccccccccccccCCceEEcccH
Q 020346 227 SLLPLSGGGYLADTPGFNQP--SL--LKV-----TKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDW 294 (327)
Q Consensus 227 ~~v~q~~~~~i~Dtpg~~~~--~l--~~~-----~~~~l~~~~~~~~~~LSgGq~q~~~~~~~~h~~ep~~~v~~~~ 294 (327)
.+.+ ..++.++..+... .. ... ....+..........||+||+||++|++++ +.+|.++++|+|
T Consensus 59 ~l~~---~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lS~G~~qrv~la~al-~~~p~llllDEP 131 (213)
T PRK15177 59 FILP---GLTGEENARMMASLYGLDGDEFSHFCYQLTQLEQCYTDRVSEYSVTMKTHLAFAINL-LLPCRLYIADGK 131 (213)
T ss_pred ccCC---cCcHHHHHHHHHHHcCCCHHHHHHHHHHHhChhHHhhchHhhcCHHHHHHHHHHHHH-hcCCCEEEECCC
Confidence 1111 1222222211000 00 000 000111111222345999999999999999 999999999975
|
|
| >COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.5e-16 Score=152.73 Aligned_cols=162 Identities=17% Similarity=0.217 Sum_probs=114.3
Q ss_pred hhhcCCceeeccCcch-hhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceee
Q 020346 132 LHTWGYEPLFCSVESK-LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRV 209 (327)
Q Consensus 132 ~~~~~~~~~~~s~~~~-~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v 209 (327)
..++.++++.++|... --+..+++.+ +|+.+-|+|.||||||||+++|.| +|+|++|+|.+||.++
T Consensus 320 ~~~lelrnvrfay~~~~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtG------------L~~PqsG~I~ldg~pV 387 (546)
T COG4615 320 WKTLELRNVRFAYQDNAFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTG------------LYQPQSGEILLDGKPV 387 (546)
T ss_pred ccceeeeeeeeccCcccceecceeeEEecCcEEEEECCCCCcHHHHHHHHhc------------ccCCCCCceeECCccC
Confidence 4556778888888654 4567788887 899999999999999999999999 9999999999999999
Q ss_pred ccccccCCCcceeeEEEEEEEccCCCeEEeC-cccCC--------ccccccCHhHHhhhh-HHH-HHhcCcccccccccc
Q 020346 210 GEVSTKSGRGKHTTRHVSLLPLSGGGYLADT-PGFNQ--------PSLLKVTKQSLAQTF-PEI-KEMLKANEPAKCSFN 278 (327)
Q Consensus 210 ~~~s~~~~~g~~tt~~i~~v~q~~~~~i~Dt-pg~~~--------~~l~~~~~~~l~~~~-~~~-~~~LSgGq~q~~~~~ 278 (327)
..-+..+ +++-++-++-+ .++.|+ .|-.. ..++.+++...-... .++ .-.||-||++|+++-
T Consensus 388 ~~e~led-----YR~LfSavFsD--yhLF~~ll~~e~~as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll 460 (546)
T COG4615 388 SAEQLED-----YRKLFSAVFSD--YHLFDQLLGPEGKASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALL 460 (546)
T ss_pred CCCCHHH-----HHHHHHHHhhh--HhhhHhhhCCccCCChHHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHH
Confidence 8766543 44444433332 233332 11111 112222211111000 000 112999999999999
Q ss_pred ccccccCCceEEcccH-------HHHHHHHHHHHHHHHhHHH
Q 020346 279 NCLHLGEPGCVVKGDW-------ERYQYYFQLLDEIRIREEF 313 (327)
Q Consensus 279 ~~~h~~ep~~~v~~~~-------~r~~~~~~ll~e~~~~~~~ 313 (327)
.++ +.|.++.|.|+| .|...|..++-.+++++|+
T Consensus 461 ~Al-lEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKT 501 (546)
T COG4615 461 LAL-LEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKT 501 (546)
T ss_pred HHH-HhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCe
Confidence 999 899999998865 3999999999999998875
|
|
| >TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.7e-15 Score=157.11 Aligned_cols=143 Identities=17% Similarity=0.157 Sum_probs=96.3
Q ss_pred cchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCccccccccccc---ccceeecceeeccccccCCCcc
Q 020346 145 ESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPI---LGSKWFEDQRVGEVSTKSGRGK 220 (327)
Q Consensus 145 ~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~---~G~i~~~g~~v~~~s~~~~~g~ 220 (327)
+++.+++++++.+ +|+.++|+||||||||||+|+|+| ..+|. +|+|.+||.++....
T Consensus 36 ~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g------------~~~~~~~~~G~i~~~g~~~~~~~------- 96 (617)
T TIGR00955 36 PRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAF------------RSPKGVKGSGSVLLNGMPIDAKE------- 96 (617)
T ss_pred CccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhC------------CCCCCCcceeEEEECCEECCHHH-------
Confidence 3567899999998 999999999999999999999999 55664 899999999875311
Q ss_pred eeeEEEEEEEccCC----CeEEeCcccCCcc-c-cccCHh----HHhhhhHH---------HH------HhcCccccccc
Q 020346 221 HTTRHVSLLPLSGG----GYLADTPGFNQPS-L-LKVTKQ----SLAQTFPE---------IK------EMLKANEPAKC 275 (327)
Q Consensus 221 ~tt~~i~~v~q~~~----~~i~Dtpg~~~~~-l-~~~~~~----~l~~~~~~---------~~------~~LSgGq~q~~ 275 (327)
.++.++|++|++. .++.|+..+.... . ..+... .+.....+ .. ..|||||+||+
T Consensus 97 -~~~~i~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRv 175 (617)
T TIGR00955 97 -MRAISAYVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRL 175 (617)
T ss_pred -HhhhceeeccccccCccCcHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHH
Confidence 4567899999752 2444443322100 0 001101 11111111 11 24999999999
Q ss_pred cccccccccCCceEEcccHH------HHHHHHHHHHHHH
Q 020346 276 SFNNCLHLGEPGCVVKGDWE------RYQYYFQLLDEIR 308 (327)
Q Consensus 276 ~~~~~~h~~ep~~~v~~~~~------r~~~~~~ll~e~~ 308 (327)
.+++++ +.+|.++++|||. ......+.++++.
T Consensus 176 sia~aL-~~~p~vlllDEPtsgLD~~~~~~l~~~L~~l~ 213 (617)
T TIGR00955 176 AFASEL-LTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLA 213 (617)
T ss_pred HHHHHH-HcCCCEEEeeCCCcchhHHHHHHHHHHHHHHH
Confidence 999999 9999999999763 3333444445544
|
|
| >COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.9e-15 Score=131.46 Aligned_cols=144 Identities=14% Similarity=0.138 Sum_probs=98.7
Q ss_pred CceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecc-----eeec
Q 020346 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFED-----QRVG 210 (327)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g-----~~v~ 210 (327)
...++.+|+...+.++++|.+ +|++.+|||.||+|||||+++|.+ -+.|++|+|.+.- .++-
T Consensus 9 V~~lsk~Yg~~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~------------rl~p~~G~v~Y~~r~~~~~dl~ 76 (258)
T COG4107 9 VSGLSKLYGPGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISG------------RLTPDAGTVTYRMRDGQPRDLY 76 (258)
T ss_pred ehhhhhhhCCCcCccccceeecCCcEEEEEecCCCcHHhHHHHHhc------------ccCCCCCeEEEEcCCCCchhHh
Confidence 455677888889999999998 999999999999999999999999 6789999999875 2333
Q ss_pred cccccCCCcceeeEEEEEEEccC--CCeEEe----CcccCCccccccCHhHHh--------------hhhHHHHHhcCcc
Q 020346 211 EVSTKSGRGKHTTRHVSLLPLSG--GGYLAD----TPGFNQPSLLKVTKQSLA--------------QTFPEIKEMLKAN 270 (327)
Q Consensus 211 ~~s~~~~~g~~tt~~i~~v~q~~--~~~i~D----tpg~~~~~l~~~~~~~l~--------------~~~~~~~~~LSgG 270 (327)
..+.. .+.+-.++.-+++.|++ +.-+-- +.|.+......-...++. ....+....+|||
T Consensus 77 ~msEa-eRR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~~~RiDD~PrtFSGG 155 (258)
T COG4107 77 TMSEA-ERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTFSGG 155 (258)
T ss_pred hhchH-HHHHHhhhccceeecCccccceeeeccCCccchhHHhhhhhhhhhHHHHHHHHHHhcccCcccccCcccccchH
Confidence 44433 23344677889999986 221111 122111110000001110 1112223458999
Q ss_pred ccccccccccccccCCceEEcccH
Q 020346 271 EPAKCSFNNCLHLGEPGCVVKGDW 294 (327)
Q Consensus 271 q~q~~~~~~~~h~~ep~~~v~~~~ 294 (327)
|+||+.+++-+ +..|.+.++|+|
T Consensus 156 MqQRLQiARnL-Vt~PrLvfMDEP 178 (258)
T COG4107 156 MQQRLQIARNL-VTRPRLVFMDEP 178 (258)
T ss_pred HHHHHHHHHHh-ccCCceEEecCC
Confidence 99999999999 899999999865
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.7e-15 Score=169.06 Aligned_cols=152 Identities=15% Similarity=0.202 Sum_probs=102.4
Q ss_pred CceeeccCc----chhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCccccccccc---ccccceeeccee
Q 020346 137 YEPLFCSVE----SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFE---PILGSKWFEDQR 208 (327)
Q Consensus 137 ~~~~~~s~~----~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~---p~~G~i~~~g~~ 208 (327)
++.+.+++. .+.+|+++++.+ +|+.++|+||||||||||+|+|+| +.+ |++|+|.+||.+
T Consensus 762 ~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag------------~~~~g~~~~G~I~i~G~~ 829 (1394)
T TIGR00956 762 WRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAE------------RVTTGVITGGDRLVNGRP 829 (1394)
T ss_pred EEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhC------------CCCCCCcceeEEEECCEE
Confidence 455555553 456899999998 999999999999999999999999 555 789999999998
Q ss_pred eccccccCCCcceeeEEEEEEEccCC----CeEEeCcccCCcc-c-cccCHhHHhhhhHHH-------------HH----
Q 020346 209 VGEVSTKSGRGKHTTRHVSLLPLSGG----GYLADTPGFNQPS-L-LKVTKQSLAQTFPEI-------------KE---- 265 (327)
Q Consensus 209 v~~~s~~~~~g~~tt~~i~~v~q~~~----~~i~Dtpg~~~~~-l-~~~~~~~l~~~~~~~-------------~~---- 265 (327)
+.. . .++.+++++|++. .++.++..+.... . ......+..+...++ ..
T Consensus 830 ~~~----~-----~~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~ 900 (1394)
T TIGR00956 830 LDS----S-----FQRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGE 900 (1394)
T ss_pred CCh----h-----hhcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCC
Confidence 742 1 4567899999742 2333333221100 0 001111110000011 11
Q ss_pred hcCccccccccccccccccCCc-eEEcccH------HHHHHHHHHHHHHHHh
Q 020346 266 MLKANEPAKCSFNNCLHLGEPG-CVVKGDW------ERYQYYFQLLDEIRIR 310 (327)
Q Consensus 266 ~LSgGq~q~~~~~~~~h~~ep~-~~v~~~~------~r~~~~~~ll~e~~~~ 310 (327)
.|||||+||+.++.++ +.+|+ ++++||| .......++++++...
T Consensus 901 ~LSgGqrqRl~Ia~aL-~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~ 951 (1394)
T TIGR00956 901 GLNVEQRKRLTIGVEL-VAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADH 951 (1394)
T ss_pred CCCHHHhhHHHHHHHH-HcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHc
Confidence 4999999999999999 89997 8999965 4555566667666543
|
|
| >COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.5e-16 Score=138.09 Aligned_cols=141 Identities=13% Similarity=0.180 Sum_probs=101.0
Q ss_pred CceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecc-eeeccccc
Q 020346 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFED-QRVGEVST 214 (327)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g-~~v~~~s~ 214 (327)
.+.+++||+.-.+++++++.+ +|+.-+||||||+||||++..|.| -.+|++|+++|+| .++...+.
T Consensus 8 ~~~vsVsF~GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItG------------Ktrp~~G~v~f~g~~dl~~~~e 75 (249)
T COG4674 8 LDGVSVSFGGFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITG------------KTRPQEGEVLFDGDTDLTKLPE 75 (249)
T ss_pred EeceEEEEcceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecc------------cCCCCcceEEEcCchhhccCCH
Confidence 467888999999999999998 999999999999999999999999 7799999999999 78877765
Q ss_pred cCCCcceeeEEEEEEEccCC----CeEEeCcccCC---ccc-----ccc------------CHhHHhhhhHHHHHhcCcc
Q 020346 215 KSGRGKHTTRHVSLLPLSGG----GYLADTPGFNQ---PSL-----LKV------------TKQSLAQTFPEIKEMLKAN 270 (327)
Q Consensus 215 ~~~~g~~tt~~i~~v~q~~~----~~i~Dtpg~~~---~~l-----~~~------------~~~~l~~~~~~~~~~LSgG 270 (327)
... .+..|+--+|.+. .++.|+.-+.. ..+ ... ..-.+.+........||.|
T Consensus 76 ~~I----Ar~GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~LSHG 151 (249)
T COG4674 76 HRI----ARAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHG 151 (249)
T ss_pred HHH----HHhccCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhhhccc
Confidence 443 4556666666542 23333321110 000 000 0001112222334559999
Q ss_pred ccccccccccccccCCceEEcccH
Q 020346 271 EPAKCSFNNCLHLGEPGCVVKGDW 294 (327)
Q Consensus 271 q~q~~~~~~~~h~~ep~~~v~~~~ 294 (327)
|+|++.+...+ +.+|.++++|+|
T Consensus 152 qKQwLEIGMll-~Q~P~lLLlDEP 174 (249)
T COG4674 152 QKQWLEIGMLL-AQDPKLLLLDEP 174 (249)
T ss_pred hhhhhhhheee-ccCCcEEEecCc
Confidence 99999999666 999999999966
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.3e-15 Score=171.89 Aligned_cols=129 Identities=17% Similarity=0.202 Sum_probs=97.5
Q ss_pred hcCCceeeccCcc---hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccc-cceeeccee
Q 020346 134 TWGYEPLFCSVES---KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPIL-GSKWFEDQR 208 (327)
Q Consensus 134 ~~~~~~~~~s~~~---~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~-G~i~~~g~~ 208 (327)
.+.++.++++|.. +.+++++++.+ +|+.++|+|+||||||||+++|+| +++|++ |+|.+
T Consensus 614 ~I~~~nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG------------~~~~~~GG~I~l---- 677 (1622)
T PLN03130 614 AISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLG------------ELPPRSDASVVI---- 677 (1622)
T ss_pred ceEEEeeEEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHH------------hhccCCCceEEE----
Confidence 3567888899863 56899999998 999999999999999999999999 899999 88863
Q ss_pred eccccccCCCcceeeEEEEEEEccC---CCeEEeCcccCCccccccCHhH---HhhhhHHHH--------------HhcC
Q 020346 209 VGEVSTKSGRGKHTTRHVSLLPLSG---GGYLADTPGFNQPSLLKVTKQS---LAQTFPEIK--------------EMLK 268 (327)
Q Consensus 209 v~~~s~~~~~g~~tt~~i~~v~q~~---~~~i~Dtpg~~~~~l~~~~~~~---l~~~~~~~~--------------~~LS 268 (327)
+..++|++|++ ++++.|+..+..+. +.-...+ .....+++. ..||
T Consensus 678 --------------~~~Iayv~Q~p~LfngTIreNI~fg~~~-d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LS 742 (1622)
T PLN03130 678 --------------RGTVAYVPQVSWIFNATVRDNILFGSPF-DPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNIS 742 (1622)
T ss_pred --------------cCeEEEEcCccccCCCCHHHHHhCCCcc-cHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCC
Confidence 34689999986 56777777766542 1100110 001111111 1399
Q ss_pred ccccccccccccccccCCceEEcccH
Q 020346 269 ANEPAKCSFNNCLHLGEPGCVVKGDW 294 (327)
Q Consensus 269 gGq~q~~~~~~~~h~~ep~~~v~~~~ 294 (327)
|||+||+++|+++ +.+|++.|+||+
T Consensus 743 GGQKQRIaLARAl-y~~~~IlLLDEp 767 (1622)
T PLN03130 743 GGQKQRVSMARAV-YSNSDVYIFDDP 767 (1622)
T ss_pred HHHHHHHHHHHHH-hCCCCEEEECCC
Confidence 9999999999999 999999999965
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.7e-15 Score=170.31 Aligned_cols=129 Identities=16% Similarity=0.130 Sum_probs=97.2
Q ss_pred cCCceeeccCcc---hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeec
Q 020346 135 WGYEPLFCSVES---KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (327)
Q Consensus 135 ~~~~~~~~s~~~---~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~ 210 (327)
+.++.++++|.. +.+++++++.+ +|+.++|+|+||||||||+++|+| +++|++|.+.
T Consensus 615 I~~~~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG------------~~~~~~G~i~------- 675 (1495)
T PLN03232 615 ISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLG------------ELSHAETSSV------- 675 (1495)
T ss_pred EEEEeeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhC------------CCcccCCCEE-------
Confidence 567788899863 56899999998 999999999999999999999999 8999998753
Q ss_pred cccccCCCcceeeEEEEEEEccC---CCeEEeCcccCCccccccCHhHH---hhhhHHHH--------------HhcCcc
Q 020346 211 EVSTKSGRGKHTTRHVSLLPLSG---GGYLADTPGFNQPSLLKVTKQSL---AQTFPEIK--------------EMLKAN 270 (327)
Q Consensus 211 ~~s~~~~~g~~tt~~i~~v~q~~---~~~i~Dtpg~~~~~l~~~~~~~l---~~~~~~~~--------------~~LSgG 270 (327)
..+..++|++|++ ++++.|+..+..+. +.-...+. ....+++. ..||||
T Consensus 676 ----------~~~~~Iayv~Q~p~Lf~gTIreNI~fg~~~-~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGG 744 (1495)
T PLN03232 676 ----------VIRGSVAYVPQVSWIFNATVRENILFGSDF-ESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGG 744 (1495)
T ss_pred ----------EecCcEEEEcCccccccccHHHHhhcCCcc-CHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHH
Confidence 0455799999986 56777777766431 11011110 01111111 139999
Q ss_pred ccccccccccccccCCceEEcccH
Q 020346 271 EPAKCSFNNCLHLGEPGCVVKGDW 294 (327)
Q Consensus 271 q~q~~~~~~~~h~~ep~~~v~~~~ 294 (327)
|+||+++|+++ +.+|++.++||+
T Consensus 745 QkQRIaLARAl-y~~~~IlLLDEp 767 (1495)
T PLN03232 745 QKQRVSMARAV-YSNSDIYIFDDP 767 (1495)
T ss_pred HHHHHHHHHHH-hcCCCEEEEcCC
Confidence 99999999999 999999999966
|
|
| >PRK13796 GTPase YqeH; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.3e-13 Score=132.84 Aligned_cols=154 Identities=26% Similarity=0.372 Sum_probs=101.8
Q ss_pred EEEEEeecCCCCCCh-HHHHHHHHHHHhcCCCEEEEeecCCCCcHH----HHHHHHhh-hhhcCC---ceeeccCcchhh
Q 020346 79 HLLLLFSMDQPKLEP-FALTRFLVEAESTGIPLTLALNKVELVDEE----VLNTWKSR-LHTWGY---EPLFCSVESKLG 149 (327)
Q Consensus 79 ~lliv~~~~~p~~~~-~~l~r~L~~a~~~~~~~~ivlnK~Dl~~~~----~~~~~~~~-~~~~~~---~~~~~s~~~~~~ 149 (327)
.++.|.++..+..+. ..+.++. .++++++|+||+||.+.. ....|... .+..++ +++.+|+.+..+
T Consensus 72 lIv~VVD~~D~~~s~~~~L~~~~-----~~kpviLViNK~DLl~~~~~~~~i~~~l~~~~k~~g~~~~~v~~vSAk~g~g 146 (365)
T PRK13796 72 LVVNVVDIFDFNGSWIPGLHRFV-----GNNPVLLVGNKADLLPKSVKKNKVKNWLRQEAKELGLRPVDVVLISAQKGHG 146 (365)
T ss_pred EEEEEEECccCCCchhHHHHHHh-----CCCCEEEEEEchhhCCCccCHHHHHHHHHHHHHhcCCCcCcEEEEECCCCCC
Confidence 777777776533232 2344433 378999999999997532 33445443 334565 467888888777
Q ss_pred HHHHHhhc----CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcceeeEE
Q 020346 150 LDSLLQRL----RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRH 225 (327)
Q Consensus 150 l~~l~~~l----~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~tt~~ 225 (327)
++.+...+ ++..++|||.||||||||||+|.+... |. .+....| ..++||+.
T Consensus 147 I~eL~~~I~~~~~~~~v~vvG~~NvGKSTLiN~L~~~~~---------------~~-----~~~~~~s----~~pGTT~~ 202 (365)
T PRK13796 147 IDELLEAIEKYREGRDVYVVGVTNVGKSTLINRIIKEIT---------------GE-----KDVITTS----RFPGTTLD 202 (365)
T ss_pred HHHHHHHHHHhcCCCeEEEEcCCCCcHHHHHHHHHhhcc---------------Cc-----cceEEec----CCCCccce
Confidence 77766554 678999999999999999999997320 10 1111222 33459999
Q ss_pred EEEEEccCCCeEEeCcccCCc-c-ccccCHhHHhhhhH
Q 020346 226 VSLLPLSGGGYLADTPGFNQP-S-LLKVTKQSLAQTFP 261 (327)
Q Consensus 226 i~~v~q~~~~~i~Dtpg~~~~-~-l~~~~~~~l~~~~~ 261 (327)
...++.+.+.+++||||+... . ...++.+++...+|
T Consensus 203 ~~~~~l~~~~~l~DTPGi~~~~~~~~~l~~~~l~~~~p 240 (365)
T PRK13796 203 KIEIPLDDGSFLYDTPGIIHRHQMAHYLSAKDLKIISP 240 (365)
T ss_pred eEEEEcCCCcEEEECCCccccchhhhcCCHHHHhhcCC
Confidence 999999878899999999643 2 23345555555444
|
|
| >TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.3e-13 Score=132.56 Aligned_cols=143 Identities=29% Similarity=0.432 Sum_probs=100.1
Q ss_pred ccccEEEEEeecCCCCCCh-HHHHHHHHHHHhcCCCEEEEeecCCCCcHH----HHHHHHh-hhhhcCC---ceeeccCc
Q 020346 75 ANVDHLLLLFSMDQPKLEP-FALTRFLVEAESTGIPLTLALNKVELVDEE----VLNTWKS-RLHTWGY---EPLFCSVE 145 (327)
Q Consensus 75 anvD~lliv~~~~~p~~~~-~~l~r~L~~a~~~~~~~~ivlnK~Dl~~~~----~~~~~~~-~~~~~~~---~~~~~s~~ 145 (327)
.+.|.++.|+++..+..+. ..+.+++ ..+++++|+||+||.+.. ....|.. .+...++ +++.+|+.
T Consensus 62 ~~~~~Il~VvD~~d~~~s~~~~l~~~~-----~~~piilV~NK~DLl~k~~~~~~~~~~l~~~~k~~g~~~~~i~~vSAk 136 (360)
T TIGR03597 62 DSNALIVYVVDIFDFEGSLIPELKRFV-----GGNPVLLVGNKIDLLPKSVNLSKIKEWMKKRAKELGLKPVDIILVSAK 136 (360)
T ss_pred cCCcEEEEEEECcCCCCCccHHHHHHh-----CCCCEEEEEEchhhCCCCCCHHHHHHHHHHHHHHcCCCcCcEEEecCC
Confidence 4678999999986543332 2344443 378999999999997542 3344432 3445665 36778988
Q ss_pred chhhHHHHHhhc----CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcce
Q 020346 146 SKLGLDSLLQRL----RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKH 221 (327)
Q Consensus 146 ~~~~l~~l~~~l----~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~ 221 (327)
+..+++.+...+ .|..++|||.+|||||||+|.|++... .. .....++..++
T Consensus 137 ~g~gv~eL~~~l~~~~~~~~v~~vG~~nvGKStliN~l~~~~~----------~~----------~~~~~~s~~pg---- 192 (360)
T TIGR03597 137 KGNGIDELLDKIKKARNKKDVYVVGVTNVGKSSLINKLLKQNN----------GD----------KDVITTSPFPG---- 192 (360)
T ss_pred CCCCHHHHHHHHHHHhCCCeEEEECCCCCCHHHHHHHHHhhcc----------CC----------cceeeecCCCC----
Confidence 888887776554 577999999999999999999998321 00 01123343343
Q ss_pred eeEEEEEEEccCCCeEEeCcccCCc
Q 020346 222 TTRHVSLLPLSGGGYLADTPGFNQP 246 (327)
Q Consensus 222 tt~~i~~v~q~~~~~i~Dtpg~~~~ 246 (327)
+|+.+..++.+.+.+++||||+...
T Consensus 193 tT~~~~~~~~~~~~~l~DtPG~~~~ 217 (360)
T TIGR03597 193 TTLDLIEIPLDDGHSLYDTPGIINS 217 (360)
T ss_pred eEeeEEEEEeCCCCEEEECCCCCCh
Confidence 8999888888777899999999865
|
This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli. |
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=99.52 E-value=1e-15 Score=159.14 Aligned_cols=60 Identities=22% Similarity=0.258 Sum_probs=54.6
Q ss_pred CCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecce
Q 020346 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQ 207 (327)
Q Consensus 136 ~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~ 207 (327)
.++.+.++|++..+++++++.+ +|++++|+|+||||||||+++|+| +++|++|+|.+++.
T Consensus 5 ~i~~ls~~~~~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG------------~~~p~~G~I~~~~~ 65 (635)
T PRK11147 5 SIHGAWLSFSDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNG------------EVLLDDGRIIYEQD 65 (635)
T ss_pred EEeeEEEEeCCceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcC------------CCCCCCeEEEeCCC
Confidence 4567888888888999999998 899999999999999999999999 88999999998763
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=99.51 E-value=4e-15 Score=167.57 Aligned_cols=128 Identities=16% Similarity=0.212 Sum_probs=94.7
Q ss_pred cCCceeeccCcc--hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecc
Q 020346 135 WGYEPLFCSVES--KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (327)
Q Consensus 135 ~~~~~~~~s~~~--~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~ 211 (327)
+.++.+.++|.+ +.+++++++.+ +|+.++|+|+||||||||+++|+| +++|++|+|.++|
T Consensus 637 i~~~~~~~~~~~~~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g------------~~~~~~G~i~~~g----- 699 (1522)
T TIGR00957 637 ITVHNATFTWARDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLA------------EMDKVEGHVHMKG----- 699 (1522)
T ss_pred EEEEEeEEEcCCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhC------------CCccCCcEEEECC-----
Confidence 556778888864 46899999998 999999999999999999999999 8999999999875
Q ss_pred ccccCCCcceeeEEEEEEEccC---CCeEEeCcccCCccccccCHhHHh---hhhHHH--------------HHhcCccc
Q 020346 212 VSTKSGRGKHTTRHVSLLPLSG---GGYLADTPGFNQPSLLKVTKQSLA---QTFPEI--------------KEMLKANE 271 (327)
Q Consensus 212 ~s~~~~~g~~tt~~i~~v~q~~---~~~i~Dtpg~~~~~l~~~~~~~l~---~~~~~~--------------~~~LSgGq 271 (327)
.++|+||++ ++++.|+..+.... +.-...+.. ...+++ ...|||||
T Consensus 700 -------------~i~yv~Q~~~l~~~Ti~eNI~~g~~~-~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQ 765 (1522)
T TIGR00957 700 -------------SVAYVPQQAWIQNDSLRENILFGKAL-NEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQ 765 (1522)
T ss_pred -------------EEEEEcCCccccCCcHHHHhhcCCcc-CHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHH
Confidence 378888875 34555655543221 000001000 001111 12399999
Q ss_pred cccccccccccccCCceEEcccH
Q 020346 272 PAKCSFNNCLHLGEPGCVVKGDW 294 (327)
Q Consensus 272 ~q~~~~~~~~h~~ep~~~v~~~~ 294 (327)
+||+++|+++ +.+|++.++|||
T Consensus 766 kqRiaLARAl-~~~~~illLDEp 787 (1522)
T TIGR00957 766 KQRVSLARAV-YSNADIYLFDDP 787 (1522)
T ss_pred HHHHHHHHHH-hcCCCEEEEcCC
Confidence 9999999999 999999999966
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.49 E-value=4.1e-15 Score=150.80 Aligned_cols=130 Identities=21% Similarity=0.173 Sum_probs=89.6
Q ss_pred CCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccc
Q 020346 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (327)
Q Consensus 136 ~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~ 214 (327)
.+..++++|+.+..++++++.+ +|+++||||+||+|||||+++|+| ...|++|+|...+
T Consensus 5 ~~~~ls~~~g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG------------~~~~~~G~i~~~~-------- 64 (530)
T COG0488 5 TLENLSLAYGDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAG------------ELEPDSGEVTRPK-------- 64 (530)
T ss_pred EEeeeEEeeCCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcC------------CCcCCCCeEeecC--------
Confidence 3467888999999999999998 999999999999999999999999 7789999887432
Q ss_pred cCCCcceeeEEEEEEEccCCCe----EEeCcccCCcccccc-----------------CHhHHhhh--------------
Q 020346 215 KSGRGKHTTRHVSLLPLSGGGY----LADTPGFNQPSLLKV-----------------TKQSLAQT-------------- 259 (327)
Q Consensus 215 ~~~~g~~tt~~i~~v~q~~~~~----i~Dtpg~~~~~l~~~-----------------~~~~l~~~-------------- 259 (327)
...+++++|+.... +.|........+..+ ...++...
T Consensus 65 --------~~~v~~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~ 136 (530)
T COG0488 65 --------GLRVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAE 136 (530)
T ss_pred --------CceEEEeCCCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHH
Confidence 23577888864221 111111100000000 00000000
Q ss_pred -------hH---HHHHhcCccccccccccccccccCCceEEcccH
Q 020346 260 -------FP---EIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDW 294 (327)
Q Consensus 260 -------~~---~~~~~LSgGq~q~~~~~~~~h~~ep~~~v~~~~ 294 (327)
|+ .-...|||||+.|+++|+++ +.+|+++++|+|
T Consensus 137 ~~L~gLg~~~~~~~~~~LSGG~r~Rv~LA~aL-~~~pDlLLLDEP 180 (530)
T COG0488 137 EALLGLGFPDEDRPVSSLSGGWRRRVALARAL-LEEPDLLLLDEP 180 (530)
T ss_pred HHHhcCCCCcccCchhhcCHHHHHHHHHHHHH-hcCCCEEEEcCC
Confidence 01 11244999999999999999 999999999966
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.5e-14 Score=162.64 Aligned_cols=117 Identities=21% Similarity=0.270 Sum_probs=85.4
Q ss_pred hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcceeeEE
Q 020346 147 KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRH 225 (327)
Q Consensus 147 ~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~tt~~ 225 (327)
+.+++++++.+ +|+.++|+||||||||||+++|+| +++|++|+|.++| .
T Consensus 439 ~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G------------~~~~~~G~i~~~g------------------~ 488 (1490)
T TIGR01271 439 TPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMG------------ELEPSEGKIKHSG------------------R 488 (1490)
T ss_pred CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhC------------CCCCCCceEEECC------------------E
Confidence 45899999998 999999999999999999999999 8999999999876 3
Q ss_pred EEEEEccC---CCeEEeCcccCCccc----cc-cCHhHHhh---hhHHH--------HHhcCccccccccccccccccCC
Q 020346 226 VSLLPLSG---GGYLADTPGFNQPSL----LK-VTKQSLAQ---TFPEI--------KEMLKANEPAKCSFNNCLHLGEP 286 (327)
Q Consensus 226 i~~v~q~~---~~~i~Dtpg~~~~~l----~~-~~~~~l~~---~~~~~--------~~~LSgGq~q~~~~~~~~h~~ep 286 (327)
++|++|.+ ++++.|+..|....- .. +....+.. .+|.- ...|||||+||+++++++ +.+|
T Consensus 489 iayv~Q~~~l~~~Ti~eNI~~g~~~~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl-~~~~ 567 (1490)
T TIGR01271 489 ISFSPQTSWIMPGTIKDNIIFGLSYDEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAV-YKDA 567 (1490)
T ss_pred EEEEeCCCccCCccHHHHHHhccccchHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHH-HcCC
Confidence 78888875 334555554432110 00 00001111 11110 124999999999999999 9999
Q ss_pred ceEEcccH
Q 020346 287 GCVVKGDW 294 (327)
Q Consensus 287 ~~~v~~~~ 294 (327)
++.|+|||
T Consensus 568 ~illLDep 575 (1490)
T TIGR01271 568 DLYLLDSP 575 (1490)
T ss_pred CEEEEeCC
Confidence 99999966
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.49 E-value=1e-14 Score=140.67 Aligned_cols=157 Identities=18% Similarity=0.232 Sum_probs=107.0
Q ss_pred CceeeccCc----chhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccc-----cccceeecc
Q 020346 137 YEPLFCSVE----SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEP-----ILGSKWFED 206 (327)
Q Consensus 137 ~~~~~~s~~----~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p-----~~G~i~~~g 206 (327)
.+++++.|. ...++++++|.+ +|+++++||.||||||-..+.+++ +++- -+|+|.|+|
T Consensus 9 v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~------------LLp~~~~~~~sg~i~f~G 76 (534)
T COG4172 9 IRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILG------------LLPSPAAAHPSGSILFDG 76 (534)
T ss_pred eeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHH------------hcCCCcccCccceeEEcC
Confidence 445555554 567899999998 999999999999999999999998 3332 379999999
Q ss_pred eeeccccccCCCcceeeEEEEEEEccCCCeE--EeCcc------------cCCc-----c---ccccCH---hHHhhhhH
Q 020346 207 QRVGEVSTKSGRGKHTTRHVSLLPLSGGGYL--ADTPG------------FNQP-----S---LLKVTK---QSLAQTFP 261 (327)
Q Consensus 207 ~~v~~~s~~~~~g~~tt~~i~~v~q~~~~~i--~Dtpg------------~~~~-----~---l~~~~~---~~l~~~~~ 261 (327)
.++-..+....++ -.-..|+|++|++-..+ .-|.| +... . ++.+.. +...+.||
T Consensus 77 ~dll~~se~~lr~-iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yP 155 (534)
T COG4172 77 EDLLAASERQLRG-VRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYP 155 (534)
T ss_pred hhhhcCCHHHHhh-hcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCC
Confidence 9988877544221 12357999999862221 11111 1110 0 111111 12223444
Q ss_pred HHHHhcCccccccccccccccccCCceEEcccHH------HHHHHHHHHHHHHHh
Q 020346 262 EIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE------RYQYYFQLLDEIRIR 310 (327)
Q Consensus 262 ~~~~~LSgGq~q~~~~~~~~h~~ep~~~v~~~~~------r~~~~~~ll~e~~~~ 310 (327)
.. |||||+||+.++.++ .++|+++|.|+|. -....+.+++++..+
T Consensus 156 He---LSGGqRQRVMIAMAL-an~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~ 206 (534)
T COG4172 156 HE---LSGGQRQRVMIAMAL-ANEPDLLIADEPTTALDVTVQAQILDLLKELQAE 206 (534)
T ss_pred cc---cCcchhhHHHHHHHH-cCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHH
Confidence 44 999999999999999 9999999999663 445556677776543
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=99.49 E-value=4.6e-15 Score=165.66 Aligned_cols=149 Identities=14% Similarity=0.133 Sum_probs=99.3
Q ss_pred chhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcceeeE
Q 020346 146 SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTR 224 (327)
Q Consensus 146 ~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~tt~ 224 (327)
.+.+|+++++.+ +|+.++|+||||||||||+|+|+|... ....|++|+|.++|.++...... .++
T Consensus 73 ~~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~--------~~~~~~~G~I~~~G~~~~~~~~~------~r~ 138 (1394)
T TIGR00956 73 TFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTD--------GFHIGVEGVITYDGITPEEIKKH------YRG 138 (1394)
T ss_pred cceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCC--------CCCCCceeEEEECCEehHHHHhh------cCc
Confidence 356899999998 999999999999999999999999321 02468999999999987654321 455
Q ss_pred EEEEEEccC----CCeEEeCcccCCc----c--ccccCHhHHh----h-hhHH--------------HHHhcCccccccc
Q 020346 225 HVSLLPLSG----GGYLADTPGFNQP----S--LLKVTKQSLA----Q-TFPE--------------IKEMLKANEPAKC 275 (327)
Q Consensus 225 ~i~~v~q~~----~~~i~Dtpg~~~~----~--l~~~~~~~l~----~-~~~~--------------~~~~LSgGq~q~~ 275 (327)
.+++++|++ ..++.++..+... . .......+.. + .... ..+.|||||+||+
T Consensus 139 ~i~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRv 218 (1394)
T TIGR00956 139 DVVYNAETDVHFPHLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRV 218 (1394)
T ss_pred eeEEeccccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHH
Confidence 799999974 2234444332110 0 0011111100 0 0000 1134999999999
Q ss_pred cccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 276 SFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 276 ~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
.++.++ +.+|.++++|+| .....+.++++++.+
T Consensus 219 sIA~aL-~~~p~vlllDEPTsgLD~~~~~~i~~~L~~la~ 257 (1394)
T TIGR00956 219 SIAEAS-LGGAKIQCWDNATRGLDSATALEFIRALKTSAN 257 (1394)
T ss_pred HHHHHH-HhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHH
Confidence 999998 899999999965 344445566666654
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.1e-14 Score=145.64 Aligned_cols=125 Identities=22% Similarity=0.280 Sum_probs=84.3
Q ss_pred eeeccCcc-hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccC
Q 020346 139 PLFCSVES-KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKS 216 (327)
Q Consensus 139 ~~~~s~~~-~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~ 216 (327)
.+.++|.. +..++++++.+ +|++++||||||+|||||||+|.| ...|.+|+|.+.
T Consensus 326 ~~~~~y~~~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g------------~~~~~~G~v~~g----------- 382 (530)
T COG0488 326 NVSKGYDGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAG------------ELGPLSGTVKVG----------- 382 (530)
T ss_pred ccccccCCCceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhh------------hcccCCceEEeC-----------
Confidence 34556644 47889999998 999999999999999999999999 667888887642
Q ss_pred CCcceeeEEEEEEEccCCCeEEe-Cc----ccCCccccccCHhHHhhhh----------HHHHHhcCccccccccccccc
Q 020346 217 GRGKHTTRHVSLLPLSGGGYLAD-TP----GFNQPSLLKVTKQSLAQTF----------PEIKEMLKANEPAKCSFNNCL 281 (327)
Q Consensus 217 ~~g~~tt~~i~~v~q~~~~~i~D-tp----g~~~~~l~~~~~~~l~~~~----------~~~~~~LSgGq~q~~~~~~~~ 281 (327)
.+..++|++|......-+ |+ .-..+.. ....+.... ......|||||+.||.|+.++
T Consensus 383 -----~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~---~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll 454 (530)
T COG0488 383 -----ETVKIGYFDQHRDELDPDKTVLEELSEGFPDG---DEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLL 454 (530)
T ss_pred -----CceEEEEEEehhhhcCccCcHHHHHHhhCccc---cHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHh
Confidence 346788999875221111 10 0000000 011111100 111344999999999999777
Q ss_pred cccCCceEEcccHH
Q 020346 282 HLGEPGCVVKGDWE 295 (327)
Q Consensus 282 h~~ep~~~v~~~~~ 295 (327)
+.+|.++|+|+|.
T Consensus 455 -~~~pNvLiLDEPT 467 (530)
T COG0488 455 -LQPPNLLLLDEPT 467 (530)
T ss_pred -ccCCCEEEEcCCC
Confidence 8999999999774
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.2e-14 Score=162.49 Aligned_cols=143 Identities=15% Similarity=0.219 Sum_probs=97.7
Q ss_pred chhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCccccccccccc---ccceeecceeeccccccCCCcce
Q 020346 146 SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPI---LGSKWFEDQRVGEVSTKSGRGKH 221 (327)
Q Consensus 146 ~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~---~G~i~~~g~~v~~~s~~~~~g~~ 221 (327)
...+|+++++.+ +|+.++|+||||||||||+|+|+| ..+|+ +|+|.+||.++.+..
T Consensus 177 ~~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG------------~l~~~~~~~G~I~~nG~~~~~~~-------- 236 (1470)
T PLN03140 177 KLTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAG------------KLDPSLKVSGEITYNGYRLNEFV-------- 236 (1470)
T ss_pred cceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhC------------CCCCCCcceeEEEECCEechhhc--------
Confidence 456899999998 999999999999999999999999 77887 999999999876543
Q ss_pred eeEEEEEEEccC----CCeEEeCcccCCcc---------ccccCH-------------------------------h---
Q 020346 222 TTRHVSLLPLSG----GGYLADTPGFNQPS---------LLKVTK-------------------------------Q--- 254 (327)
Q Consensus 222 tt~~i~~v~q~~----~~~i~Dtpg~~~~~---------l~~~~~-------------------------------~--- 254 (327)
.++.++|++|.+ ..++.+|..|.... +..+.. .
T Consensus 237 ~~~~i~yv~Q~d~~~~~lTV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L 316 (1470)
T PLN03140 237 PRKTSAYISQNDVHVGVMTVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTL 316 (1470)
T ss_pred ccceeEEecccccCCCcCcHHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHH
Confidence 235689999974 23444443321100 000000 0
Q ss_pred ---HHhhhh-----HHHHHhcCccccccccccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 255 ---SLAQTF-----PEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 255 ---~l~~~~-----~~~~~~LSgGq~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
.+.+.. .+..+.|||||+||+.++.++ +.+|.++++|+| .....+.++++++.+
T Consensus 317 ~~lGL~~~~~t~vg~~~~rglSGGerkRVsia~aL-~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~ 384 (1470)
T PLN03140 317 KILGLDICKDTIVGDEMIRGISGGQKKRVTTGEMI-VGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVH 384 (1470)
T ss_pred HHcCCccccCceeCCccccCCCcccceeeeehhhh-cCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHH
Confidence 000000 111235999999999999988 999999999965 333444455555543
|
|
| >COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.47 E-value=7.1e-15 Score=129.03 Aligned_cols=149 Identities=18% Similarity=0.216 Sum_probs=96.0
Q ss_pred eeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCC
Q 020346 139 PLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSG 217 (327)
Q Consensus 139 ~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~ 217 (327)
.+.++-+....+.+++|.+ +|+.+.|.||||+|||||+++|+| +.+|++|+|.+++..+......
T Consensus 7 ~L~~~R~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaG------------Ll~p~~G~v~~~~~~i~~~~~~-- 72 (209)
T COG4133 7 NLSCERGERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAG------------LLRPDAGEVYWQGEPIQNVRES-- 72 (209)
T ss_pred hhhhccCcceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHc------------ccCCCCCeEEecCCCCccchhh--
Confidence 3444445566788999997 999999999999999999999999 9999999999999888766532
Q ss_pred CcceeeEEEEEEEccCC----CeEEeCcccCCcc------------ccccCHhHHhhhhHHHHHhcCccccccccccccc
Q 020346 218 RGKHTTRHVSLLPLSGG----GYLADTPGFNQPS------------LLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCL 281 (327)
Q Consensus 218 ~g~~tt~~i~~v~q~~~----~~i~Dtpg~~~~~------------l~~~~~~~l~~~~~~~~~~LSgGq~q~~~~~~~~ 281 (327)
+..+.-|+--.++ .+..++.-|-... ++.+....+.+. -...||.||++|+++++..
T Consensus 73 ----~~~~l~yLGH~~giK~eLTa~ENL~F~~~~~~~~~~~~i~~Al~~vgL~g~~dl---p~~~LSAGQqRRvAlArL~ 145 (209)
T COG4133 73 ----YHQALLYLGHQPGIKTELTALENLHFWQRFHGSGNAATIWEALAQVGLAGLEDL---PVGQLSAGQQRRVALARLW 145 (209)
T ss_pred ----HHHHHHHhhccccccchhhHHHHHHHHHHHhCCCchhhHHHHHHHcCccccccc---chhhcchhHHHHHHHHHHH
Confidence 2222223221111 1222222211110 111111111111 1345999999999999988
Q ss_pred cccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 282 HLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 282 h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
+..+.+-|+|+| +-.+.+-.++.+-..
T Consensus 146 -ls~~pLWiLDEP~taLDk~g~a~l~~l~~~H~~ 178 (209)
T COG4133 146 -LSPAPLWILDEPFTALDKEGVALLTALMAAHAA 178 (209)
T ss_pred -cCCCCceeecCcccccCHHHHHHHHHHHHHHhc
Confidence 788888888854 455555555555433
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.1e-14 Score=160.56 Aligned_cols=143 Identities=14% Similarity=0.101 Sum_probs=96.2
Q ss_pred hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCccccccccc--ccccceeecceeeccccccCCCcceee
Q 020346 147 KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFE--PILGSKWFEDQRVGEVSTKSGRGKHTT 223 (327)
Q Consensus 147 ~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~--p~~G~i~~~g~~v~~~s~~~~~g~~tt 223 (327)
..+++++++.+ +|+.++|+||||||||||+|+|+| ..+ +.+|+|.++|.+..... .+
T Consensus 893 ~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG------------~~~~g~~~G~I~inG~~~~~~~--------~~ 952 (1470)
T PLN03140 893 LQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAG------------RKTGGYIEGDIRISGFPKKQET--------FA 952 (1470)
T ss_pred ceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcC------------CCCCCcccceEEECCccCChHH--------hh
Confidence 46899999998 999999999999999999999999 333 47899999998753211 34
Q ss_pred EEEEEEEccCC----CeEEeCcccCCc-cc-cccCHh-------------HHhhhhHHHH-----HhcCccccccccccc
Q 020346 224 RHVSLLPLSGG----GYLADTPGFNQP-SL-LKVTKQ-------------SLAQTFPEIK-----EMLKANEPAKCSFNN 279 (327)
Q Consensus 224 ~~i~~v~q~~~----~~i~Dtpg~~~~-~l-~~~~~~-------------~l~~~~~~~~-----~~LSgGq~q~~~~~~ 279 (327)
+.++|++|.+. .++.|+..+... .+ ..+... ++.+...... +.|||||+||+.|+.
T Consensus 953 ~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~ 1032 (1470)
T PLN03140 953 RISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAV 1032 (1470)
T ss_pred hheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHH
Confidence 56899999742 233343332110 00 001111 0111111111 349999999999999
Q ss_pred cccccCCceEEcccH------HHHHHHHHHHHHHHHh
Q 020346 280 CLHLGEPGCVVKGDW------ERYQYYFQLLDEIRIR 310 (327)
Q Consensus 280 ~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~~ 310 (327)
++ +.+|.++++||| .......++++++.+.
T Consensus 1033 aL-~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~ 1068 (1470)
T PLN03140 1033 EL-VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1068 (1470)
T ss_pred HH-hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC
Confidence 99 999999999965 3555566666666544
|
|
| >KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.4e-14 Score=148.15 Aligned_cols=149 Identities=19% Similarity=0.191 Sum_probs=98.5
Q ss_pred chhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcceeeE
Q 020346 146 SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTR 224 (327)
Q Consensus 146 ~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~tt~ 224 (327)
.++.|++++... +|+..||+||||||||||+|+|+|+... --..+|+|++||++...-. .++
T Consensus 42 ~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~---------~~~~~G~ilvNG~~~~~~~--------~~~ 104 (613)
T KOG0061|consen 42 TKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNG---------GLKLSGEILLNGRPRDSRS--------FRK 104 (613)
T ss_pred cceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccC---------CCcceEEEEECCccCchhh--------hhh
Confidence 367889999887 9999999999999999999999995310 0257999999995543222 677
Q ss_pred EEEEEEccCC----CeEEeCcccCCcc-c-cccCHhHHhhhhHHHH------------------HhcCcccccccccccc
Q 020346 225 HVSLLPLSGG----GYLADTPGFNQPS-L-LKVTKQSLAQTFPEIK------------------EMLKANEPAKCSFNNC 280 (327)
Q Consensus 225 ~i~~v~q~~~----~~i~Dtpg~~~~~-l-~~~~~~~l~~~~~~~~------------------~~LSgGq~q~~~~~~~ 280 (327)
..+|+.|++- .++.+|.-+.... + ..+..++.....+++. +-+||||++|+.|+..
T Consensus 105 ~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~E 184 (613)
T KOG0061|consen 105 ISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALE 184 (613)
T ss_pred eeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHH
Confidence 8999999752 2333332222110 1 1112222222222221 2389999999999988
Q ss_pred ccccCCceEEcccHH------HHHHHHHHHHHHHHhHH
Q 020346 281 LHLGEPGCVVKGDWE------RYQYYFQLLDEIRIREE 312 (327)
Q Consensus 281 ~h~~ep~~~v~~~~~------r~~~~~~ll~e~~~~~~ 312 (327)
+ +++|.+++.|||. --....++|+++...++
T Consensus 185 l-l~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~gr 221 (613)
T KOG0061|consen 185 L-LTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGR 221 (613)
T ss_pred H-HcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCC
Confidence 8 9999999999874 33333456666655544
|
|
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=5.2e-14 Score=158.63 Aligned_cols=121 Identities=23% Similarity=0.322 Sum_probs=86.5
Q ss_pred CcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCccee
Q 020346 144 VESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHT 222 (327)
Q Consensus 144 ~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~t 222 (327)
+.++.+++++++.+ +|+.++|+|+||||||||+++|+| +++|++|+|+++
T Consensus 670 ~~~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G------------~~~~~~G~i~~~----------------- 720 (1560)
T PTZ00243 670 LEPKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLS------------QFEISEGRVWAE----------------- 720 (1560)
T ss_pred cCCceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhc------------CCCCCCcEEEEC-----------------
Confidence 34566899999998 999999999999999999999999 889999998742
Q ss_pred eEEEEEEEccC---CCeEEeCcccCCccc-cc----cCHhHHhhhhHH-----------HHHhcCccccccccccccccc
Q 020346 223 TRHVSLLPLSG---GGYLADTPGFNQPSL-LK----VTKQSLAQTFPE-----------IKEMLKANEPAKCSFNNCLHL 283 (327)
Q Consensus 223 t~~i~~v~q~~---~~~i~Dtpg~~~~~l-~~----~~~~~l~~~~~~-----------~~~~LSgGq~q~~~~~~~~h~ 283 (327)
..++|+||.+ ++++.|+..+....- +. +....+...... -...|||||+||+++++++ +
T Consensus 721 -~~i~yv~Q~~~l~~~Tv~enI~~~~~~~~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl-~ 798 (1560)
T PTZ00243 721 -RSIAYVPQQAWIMNATVRGNILFFDEEDAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAV-Y 798 (1560)
T ss_pred -CeEEEEeCCCccCCCcHHHHHHcCChhhHHHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHH-h
Confidence 2588999975 334455544432110 00 000011111111 1123999999999999999 9
Q ss_pred cCCceEEcccHH
Q 020346 284 GEPGCVVKGDWE 295 (327)
Q Consensus 284 ~ep~~~v~~~~~ 295 (327)
.+|+++|+|||.
T Consensus 799 ~~p~illLDEP~ 810 (1560)
T PTZ00243 799 ANRDVYLLDDPL 810 (1560)
T ss_pred cCCCEEEEcCcc
Confidence 999999999763
|
|
| >COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.8e-14 Score=124.96 Aligned_cols=144 Identities=17% Similarity=0.220 Sum_probs=91.6
Q ss_pred hhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeeccee--eccccccCCCcc-eee
Q 020346 148 LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQR--VGEVSTKSGRGK-HTT 223 (327)
Q Consensus 148 ~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~--v~~~s~~~~~g~-~tt 223 (327)
++++++++.+ .|+++++=||||+|||||+++|-+ -|.|++|+|++.-.. +.-....+..-- -.+
T Consensus 25 pV~~~vslsV~aGECvvL~G~SG~GKStllr~LYa------------NY~~d~G~I~v~H~g~~vdl~~a~pr~vl~vRr 92 (235)
T COG4778 25 PVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYA------------NYLPDEGQILVRHEGEWVDLVTAEPREVLEVRR 92 (235)
T ss_pred eeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHh------------ccCCCCceEEEEeCcchhhhhccChHHHHHHHH
Confidence 5788999998 899999999999999999999999 899999999985431 111111110000 023
Q ss_pred EEEEEEEccCCCeEEeCcccC------Cccc-----------------cccC-HhHHhhhhHHHHHhcCccccccccccc
Q 020346 224 RHVSLLPLSGGGYLADTPGFN------QPSL-----------------LKVT-KQSLAQTFPEIKEMLKANEPAKCSFNN 279 (327)
Q Consensus 224 ~~i~~v~q~~~~~i~Dtpg~~------~~~l-----------------~~~~-~~~l~~~~~~~~~~LSgGq~q~~~~~~ 279 (327)
+-++|+.|.- .-.|.+. ++.+ ..+. .+.++...|.. .||||+||+.+++
T Consensus 93 ~TiGyVSQFL----RviPRV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~LaPaT---FSGGEqQRVNIaR 165 (235)
T COG4778 93 TTIGYVSQFL----RVIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLAPAT---FSGGEQQRVNIAR 165 (235)
T ss_pred hhhHHHHHHH----HhccCcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCCCcc---cCCchheehhhhh
Confidence 4477887742 1112211 1111 0010 12344444433 8999999999999
Q ss_pred cccccCCceEEcccHH------HHHHHHHHHHHHHHhH
Q 020346 280 CLHLGEPGCVVKGDWE------RYQYYFQLLDEIRIRE 311 (327)
Q Consensus 280 ~~h~~ep~~~v~~~~~------r~~~~~~ll~e~~~~~ 311 (327)
.+ +.+-.++++|+|. ..+-..+|+.|-+.++
T Consensus 166 gf-ivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~G 202 (235)
T COG4778 166 GF-IVDYPILLLDEPTASLDATNRAVVVELIREAKARG 202 (235)
T ss_pred hh-hccCceEEecCCcccccccchHHHHHHHHHHHhcC
Confidence 88 6666677777653 5566667777765543
|
|
| >cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function | Back alignment and domain information |
|---|
Probab=99.39 E-value=2e-13 Score=122.18 Aligned_cols=131 Identities=18% Similarity=0.180 Sum_probs=81.8
Q ss_pred HHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccc---------cccceeecceeeccccccCCCcce
Q 020346 152 SLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEP---------ILGSKWFEDQRVGEVSTKSGRGKH 221 (327)
Q Consensus 152 ~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p---------~~G~i~~~g~~v~~~s~~~~~g~~ 221 (327)
++++.+ +| +++|+||||+|||||+++|.+ +..| ..|++.++|++.....
T Consensus 15 ~~~l~~~~g-~~~i~G~nGsGKStll~al~~------------l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 73 (197)
T cd03278 15 KTTIPFPPG-LTAIVGPNGSGKSNIIDAIRW------------VLGEQSAKSLRGEKMSDVIFAGSETRKPA-------- 73 (197)
T ss_pred CeeeecCCC-cEEEECCCCCCHHHHHHHHHH------------HhccccchhhcccCHHHHhccCCCCCCCC--------
Confidence 445555 56 999999999999999999998 4433 3456777776543211
Q ss_pred eeEEEEEEEccCCCeEEeCcccCCccccccCHhHHhhhhHHHHHhcCcccccccccccccc---ccCCceEEcccH----
Q 020346 222 TTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLH---LGEPGCVVKGDW---- 294 (327)
Q Consensus 222 tt~~i~~v~q~~~~~i~Dtpg~~~~~l~~~~~~~l~~~~~~~~~~LSgGq~q~~~~~~~~h---~~ep~~~v~~~~---- 294 (327)
.+..+++++|+++.+....+ .....+.++..+.... ....||+||+||++++.++. ..+|.++++|+|
T Consensus 74 ~~~~v~~vfq~~~~~~~~~~--~~~~~~~l~~~~~~~~---~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~L 148 (197)
T cd03278 74 NFAEVTLTFDNSDGRYSIIS--QGDVSEIIEAPGKKVQ---RLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAAL 148 (197)
T ss_pred ceEEEEEEEEcCCCceeEEe--hhhHHHHHhCCCcccc---chhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccC
Confidence 35779999998754411000 0000000111111122 23349999999999998873 257799999865
Q ss_pred --HHHHHHHHHHHHHH
Q 020346 295 --ERYQYYFQLLDEIR 308 (327)
Q Consensus 295 --~r~~~~~~ll~e~~ 308 (327)
...+.+..+++++.
T Consensus 149 D~~~~~~l~~~l~~~~ 164 (197)
T cd03278 149 DDANVERFARLLKEFS 164 (197)
T ss_pred CHHHHHHHHHHHHHhc
Confidence 45556666666653
|
Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w |
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=4.3e-14 Score=148.59 Aligned_cols=65 Identities=17% Similarity=0.062 Sum_probs=54.5
Q ss_pred cCCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeeccee
Q 020346 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQR 208 (327)
Q Consensus 135 ~~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~ 208 (327)
+.++.+.++|++..+++++++.+ +|++++|||+||||||||+++|+|... .-.|++|+|.+.++.
T Consensus 178 I~i~nls~~y~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~---------~g~p~~g~I~~~~Q~ 243 (718)
T PLN03073 178 IHMENFSISVGGRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAI---------DGIPKNCQILHVEQE 243 (718)
T ss_pred EEEceEEEEeCCCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCC---------CCCCCCCEEEEEecc
Confidence 55678899998888999999998 899999999999999999999999320 015889999876664
|
|
| >KOG2484 consensus GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.4e-12 Score=123.95 Aligned_cols=149 Identities=29% Similarity=0.381 Sum_probs=108.3
Q ss_pred ccccccccEEEEEeecCCCCC-ChHHHHHHHHHHHhcCCCEEEEeecCCCCcHHHHHHHHhhhhhcCCceeeccCcchh-
Q 020346 71 DPPVANVDHLLLLFSMDQPKL-EPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVESKL- 148 (327)
Q Consensus 71 r~~~anvD~lliv~~~~~p~~-~~~~l~r~L~~a~~~~~~~~ivlnK~Dl~~~~~~~~~~~~~~~~~~~~~~~s~~~~~- 148 (327)
+..+..+|+++.|.++..|.- ....+++.+.++.. +++.++||||+||++.+..++|..+++.-+-.+.+.......
T Consensus 141 rkvve~sDVVleVlDARDPlgtR~~~vE~~V~~~~g-nKkLILVLNK~DLVPrEv~e~Wl~YLr~~~ptv~fkast~~~~ 219 (435)
T KOG2484|consen 141 RKVVEASDVVLEVLDARDPLGTRCPEVEEAVLQAHG-NKKLILVLNKIDLVPREVVEKWLVYLRREGPTVAFKASTQMQN 219 (435)
T ss_pred HHHHhhhheEEEeeeccCCCCCCChhHHHHHHhccC-CceEEEEeehhccCCHHHHHHHHHHHHhhCCcceeeccccccc
Confidence 357999999999999999954 45578998765543 499999999999999999999999998754444333221111
Q ss_pred ------------hHHHHHhhc----C------CCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecc
Q 020346 149 ------------GLDSLLQRL----R------DQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFED 206 (327)
Q Consensus 149 ------------~l~~l~~~l----~------g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g 206 (327)
+-+.+--.+ . --+++|||-+++||||+||.|....
T Consensus 220 ~~~~~~~~s~c~gae~l~~~lgny~~~~~lk~sIrvGViG~PNVGKSSvINsL~~~k----------------------- 276 (435)
T KOG2484|consen 220 SNSKNLQSSVCFGAETLMKVLGNYCRKGELKTSIRVGIIGYPNVGKSSVINSLKRRK----------------------- 276 (435)
T ss_pred ccccccccchhhhHHHHHHHhcCcccccccCcceEeeeecCCCCChhHHHHHHHHhc-----------------------
Confidence 112221112 1 1379999999999999999998732
Q ss_pred eeeccccccCCCcceeeEEEEEEEccCCCeEEeCcccCCcccc
Q 020346 207 QRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLL 249 (327)
Q Consensus 207 ~~v~~~s~~~~~g~~tt~~i~~v~q~~~~~i~Dtpg~~~~~l~ 249 (327)
+-.+...+| .|+.+..+.++.+..++|+||+.....+
T Consensus 277 --~C~vg~~pG----vT~smqeV~Ldk~i~llDsPgiv~~~~~ 313 (435)
T KOG2484|consen 277 --ACNVGNVPG----VTRSMQEVKLDKKIRLLDSPGIVPPSID 313 (435)
T ss_pred --cccCCCCcc----chhhhhheeccCCceeccCCceeecCCC
Confidence 222333334 8888999999999999999998765443
|
|
| >COG1160 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.35 E-value=6e-12 Score=123.52 Aligned_cols=166 Identities=27% Similarity=0.375 Sum_probs=112.8
Q ss_pred cccccccccccccccEEEEEeecCCCCCCh--HHHHHHHHHHHhcCCCEEEEeecCCCCcHHHHHHHHhhhhhcCC-cee
Q 020346 64 QRSTEILDPPVANVDHLLLLFSMDQPKLEP--FALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGY-EPL 140 (327)
Q Consensus 64 ~R~~~l~r~~~anvD~lliv~~~~~p~~~~--~~l~r~L~~a~~~~~~~~ivlnK~Dl~~~~~~~~~~~~~~~~~~-~~~ 140 (327)
.+.......++..+|++++|++... .+++ ..+.++| +..++|+++|+||+|-...+. ....|.++|+ +.+
T Consensus 71 ~~i~~Qa~~Ai~eADvilfvVD~~~-Git~~D~~ia~~L---r~~~kpviLvvNK~D~~~~e~---~~~efyslG~g~~~ 143 (444)
T COG1160 71 ELIREQALIAIEEADVILFVVDGRE-GITPADEEIAKIL---RRSKKPVILVVNKIDNLKAEE---LAYEFYSLGFGEPV 143 (444)
T ss_pred HHHHHHHHHHHHhCCEEEEEEeCCC-CCCHHHHHHHHHH---HhcCCCEEEEEEcccCchhhh---hHHHHHhcCCCCce
Confidence 3334444557899999999999985 3333 3455655 356799999999999864332 2456778898 789
Q ss_pred eccCcchhhHHHHHhhc------------CC----CEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceee
Q 020346 141 FCSVESKLGLDSLLQRL------------RD----QTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWF 204 (327)
Q Consensus 141 ~~s~~~~~~l~~l~~~l------------~g----~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~ 204 (327)
.+|+.++.++.+|...+ .+ -.+||||.|++|||||+|+|+|+.+.
T Consensus 144 ~ISA~Hg~Gi~dLld~v~~~l~~~e~~~~~~~~~~ikiaiiGrPNvGKSsLiN~ilgeeR~------------------- 204 (444)
T COG1160 144 PISAEHGRGIGDLLDAVLELLPPDEEEEEEEETDPIKIAIIGRPNVGKSSLINAILGEERV------------------- 204 (444)
T ss_pred EeehhhccCHHHHHHHHHhhcCCcccccccccCCceEEEEEeCCCCCchHHHHHhccCceE-------------------
Confidence 99999888877665442 12 47999999999999999999995532
Q ss_pred cceeeccccccCCCcceeeEEEEEEEccC---CCeEEeCcccCCcc--ccccCHhHHhhhhHHHHH
Q 020346 205 EDQRVGEVSTKSGRGKHTTRHVSLLPLSG---GGYLADTPGFNQPS--LLKVTKQSLAQTFPEIKE 265 (327)
Q Consensus 205 ~g~~v~~~s~~~~~g~~tt~~i~~v~q~~---~~~i~Dtpg~~~~~--l~~~~~~~l~~~~~~~~~ 265 (327)
=++..+| ||+..-..+... ...++||.|++... .+.++...+..+.+.+..
T Consensus 205 ------Iv~~~aG----TTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~aI~~ 260 (444)
T COG1160 205 ------IVSDIAG----TTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVARTLKAIER 260 (444)
T ss_pred ------EecCCCC----ccccceeeeEEECCeEEEEEECCCCCcccccccceEEEeehhhHhHHhh
Confidence 1222234 677666565553 34789999999754 223344444555555433
|
|
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.35 E-value=3.5e-13 Score=147.52 Aligned_cols=129 Identities=22% Similarity=0.270 Sum_probs=96.1
Q ss_pred CCceeeccCcc---hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecc
Q 020346 136 GYEPLFCSVES---KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (327)
Q Consensus 136 ~~~~~~~s~~~---~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~ 211 (327)
.++...++|.. .+.+++|++.+ +|+.+||+|+.||||||||.+|+| ..+..+|++.++|.
T Consensus 520 ~i~~~sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLG------------Em~~~sG~v~v~gs---- 583 (1381)
T KOG0054|consen 520 EIKNGSFSWDSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILG------------EMPKLSGSVAVNGS---- 583 (1381)
T ss_pred EEeeeeEecCCCCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhc------------CcccccceEEEcCe----
Confidence 34555666653 34899999998 899999999999999999999999 67888998876553
Q ss_pred ccccCCCcceeeEEEEEEEccC---CCeEEeCcccCCccccc-----cCHhHHhh---hhH-----HHH---HhcCcccc
Q 020346 212 VSTKSGRGKHTTRHVSLLPLSG---GGYLADTPGFNQPSLLK-----VTKQSLAQ---TFP-----EIK---EMLKANEP 272 (327)
Q Consensus 212 ~s~~~~~g~~tt~~i~~v~q~~---~~~i~Dtpg~~~~~l~~-----~~~~~l~~---~~~-----~~~---~~LSgGq~ 272 (327)
++|+||.+ ++++.|+..|..+.-+. ++.-.+.. .+| ++- -.|||||+
T Consensus 584 --------------iaYv~Q~pWI~ngTvreNILFG~~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQK 649 (1381)
T KOG0054|consen 584 --------------VAYVPQQPWIQNGTVRENILFGSPYDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQK 649 (1381)
T ss_pred --------------EEEeccccHhhCCcHHHhhhcCccccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHH
Confidence 78888876 78899999988654211 00001111 111 111 12999999
Q ss_pred ccccccccccccCCceEEcccHH
Q 020346 273 AKCSFNNCLHLGEPGCVVKGDWE 295 (327)
Q Consensus 273 q~~~~~~~~h~~ep~~~v~~~~~ 295 (327)
||+++|+|+ ..+.++.++|||-
T Consensus 650 qRIsLARAV-Y~~adIYLLDDpl 671 (1381)
T KOG0054|consen 650 QRISLARAV-YQDADIYLLDDPL 671 (1381)
T ss_pred HHHHHHHHH-hccCCEEEEcCcc
Confidence 999999999 9999999999873
|
|
| >KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.3e-12 Score=138.59 Aligned_cols=157 Identities=12% Similarity=0.165 Sum_probs=104.1
Q ss_pred ceeeccCcchh-hHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccccc
Q 020346 138 EPLFCSVESKL-GLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (327)
Q Consensus 138 ~~~~~s~~~~~-~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~ 215 (327)
+.+..-|+... +++++++.+ +|++.++.|+|||||||++|+|.| ..+|++|+++++|.++..-...
T Consensus 568 ~~L~k~y~~~~~Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG------------~~~~t~G~a~i~g~~i~~~~~~ 635 (885)
T KOG0059|consen 568 NNLSKVYGGKDGAVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTG------------ETKPTSGEALIKGHDITVSTDF 635 (885)
T ss_pred cceeeeecchhhhhcceEEEecCCceEEEecCCCCCchhhHHHHhC------------CccCCcceEEEecCccccccch
Confidence 34455565554 889999998 899999999999999999999999 8899999999998887653322
Q ss_pred CCCcceeeEEEEEEEccCCCeEEeCcccC---CccccccCHhHHhh-------------hhHHHHHhcCccccccccccc
Q 020346 216 SGRGKHTTRHVSLLPLSGGGYLADTPGFN---QPSLLKVTKQSLAQ-------------TFPEIKEMLKANEPAKCSFNN 279 (327)
Q Consensus 216 ~~~g~~tt~~i~~v~q~~~~~i~Dtpg~~---~~~l~~~~~~~l~~-------------~~~~~~~~LSgGq~q~~~~~~ 279 (327)
.. ..+++||.||.+...-.-|..-. -..+..+...++.. ........+|||+++|+.++-
T Consensus 636 ~~----~~~~iGyCPQ~d~l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~ai 711 (885)
T KOG0059|consen 636 QQ----VRKQLGYCPQFDALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAI 711 (885)
T ss_pred hh----hhhhcccCCchhhhhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHH
Confidence 11 56789999997422111110000 00011111111111 111113459999999999998
Q ss_pred cccccCCceEEccc------HHHHHHHHHHHHHHHHhH
Q 020346 280 CLHLGEPGCVVKGD------WERYQYYFQLLDEIRIRE 311 (327)
Q Consensus 280 ~~h~~ep~~~v~~~------~~r~~~~~~ll~e~~~~~ 311 (327)
++ ++.|.++++|+ |.-....-.++.++++.+
T Consensus 712 al-ig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g 748 (885)
T KOG0059|consen 712 AL-IGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNG 748 (885)
T ss_pred HH-hcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcC
Confidence 88 99999999985 443344445666665543
|
|
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.1e-12 Score=125.73 Aligned_cols=129 Identities=25% Similarity=0.284 Sum_probs=80.4
Q ss_pred hhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcceeeEEE
Q 020346 148 LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHV 226 (327)
Q Consensus 148 ~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~tt~~i 226 (327)
+.+..++|-+ -..+++||||||+|||||+++|.| -+.|+.|+.. +|.+-++
T Consensus 601 pLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~G------------kl~P~~GE~R----------------KnhrL~i 652 (807)
T KOG0066|consen 601 PLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIG------------KLDPNDGELR----------------KNHRLRI 652 (807)
T ss_pred chhhcccccccccceeEEECCCCccHHHHHHHHhc------------CCCCCcchhh----------------ccceeee
Confidence 3344444443 346899999999999999999999 6678888632 2367789
Q ss_pred EEEEccCC--CeEEeCcc------cCCcc------ccccCHhHHhhhhHHHHHhcCccccccccccccccccCCceEEcc
Q 020346 227 SLLPLSGG--GYLADTPG------FNQPS------LLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG 292 (327)
Q Consensus 227 ~~v~q~~~--~~i~Dtpg------~~~~~------l~~~~~~~l~~~~~~~~~~LSgGq~q~~~~~~~~h~~ep~~~v~~ 292 (327)
+++-|..+ +...+||. |..+. +..+.+...+++.. ...|||||+.|++|+... +++|+++|+|
T Consensus 653 G~FdQh~~E~L~~Eetp~EyLqr~FNlpyq~ARK~LG~fGL~sHAHTik--ikdLSGGQKaRValaeLa-l~~PDvlILD 729 (807)
T KOG0066|consen 653 GWFDQHANEALNGEETPVEYLQRKFNLPYQEARKQLGTFGLASHAHTIK--IKDLSGGQKARVALAELA-LGGPDVLILD 729 (807)
T ss_pred echhhhhHHhhccccCHHHHHHHhcCCChHHHHHHhhhhhhhhccceEe--eeecCCcchHHHHHHHHh-cCCCCEEEec
Confidence 98887542 23334443 21111 11111111111111 223999999999999765 7999999999
Q ss_pred cHH---HHHHHHHHHHHH
Q 020346 293 DWE---RYQYYFQLLDEI 307 (327)
Q Consensus 293 ~~~---r~~~~~~ll~e~ 307 (327)
+|. .+++.-++-+.+
T Consensus 730 EPTNNLDIESIDALaEAI 747 (807)
T KOG0066|consen 730 EPTNNLDIESIDALAEAI 747 (807)
T ss_pred CCCCCcchhhHHHHHHHH
Confidence 764 444444444444
|
|
| >COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.3e-12 Score=133.03 Aligned_cols=143 Identities=27% Similarity=0.310 Sum_probs=95.0
Q ss_pred cCCceeeccCcc-hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccc
Q 020346 135 WGYEPLFCSVES-KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV 212 (327)
Q Consensus 135 ~~~~~~~~s~~~-~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~ 212 (327)
+.++++.+.-.. ..-++++++.+ +|+.+.|.|+||||||||+++|+| +++-.+|+|.+-
T Consensus 393 i~~~nl~l~~p~~~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaG------------LWP~g~G~I~~P------- 453 (604)
T COG4178 393 ITLENLSLRTPDGQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAG------------LWPWGSGRISMP------- 453 (604)
T ss_pred eEEeeeeEECCCCCeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhc------------cCccCCCceecC-------
Confidence 445555555443 45678888887 899999999999999999999999 999999987542
Q ss_pred cccCCCcceeeEEEEEEEccC---CCeEEeCcc-------cCCc----cccccCHhHHhhhhHHH---HHhcCccccccc
Q 020346 213 STKSGRGKHTTRHVSLLPLSG---GGYLADTPG-------FNQP----SLLKVTKQSLAQTFPEI---KEMLKANEPAKC 275 (327)
Q Consensus 213 s~~~~~g~~tt~~i~~v~q~~---~~~i~Dtpg-------~~~~----~l~~~~~~~l~~~~~~~---~~~LSgGq~q~~ 275 (327)
. ...+-|+||.+ .+++.|-.. +.+. .+..+..+++...+.+. ...||+||+||+
T Consensus 454 -~--------~~~~lflpQ~PY~p~GtLre~l~YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRl 524 (604)
T COG4178 454 -A--------DSALLFLPQRPYLPQGTLREALCYPNAAPDFSDAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRL 524 (604)
T ss_pred -C--------CCceEEecCCCCCCCccHHHHHhCCCCCCCCChHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHH
Confidence 0 11244667754 223322111 2222 13334444444444332 234999999999
Q ss_pred cccccccccCCceEEcc------cHHHHHHHHHHHHH
Q 020346 276 SFNNCLHLGEPGCVVKG------DWERYQYYFQLLDE 306 (327)
Q Consensus 276 ~~~~~~h~~ep~~~v~~------~~~r~~~~~~ll~e 306 (327)
+||+.+ ++.|+.+++| |++-.....+++++
T Consensus 525 afARil-L~kP~~v~LDEATsALDe~~e~~l~q~l~~ 560 (604)
T COG4178 525 AFARLL-LHKPKWVFLDEATSALDEETEDRLYQLLKE 560 (604)
T ss_pred HHHHHH-HcCCCEEEEecchhccChHHHHHHHHHHHh
Confidence 999999 9999999998 34444444444444
|
|
| >KOG2423 consensus Nucleolar GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.4e-11 Score=118.54 Aligned_cols=146 Identities=25% Similarity=0.348 Sum_probs=105.2
Q ss_pred cccccccEEEEEeecCCC-CCChHHHHHHHHHHHhcCCCEEEEeecCCCCcHHHHHHHHhhhhh----cCCc-eeeccCc
Q 020346 72 PPVANVDHLLLLFSMDQP-KLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHT----WGYE-PLFCSVE 145 (327)
Q Consensus 72 ~~~anvD~lliv~~~~~p-~~~~~~l~r~L~~a~~~~~~~~ivlnK~Dl~~~~~~~~~~~~~~~----~~~~-~~~~s~~ 145 (327)
..+-..|+++.|.++..| ......+++||.. ++..+..+.||||+||++......|...+.. +.|. .+.-+|+
T Consensus 209 KViDSSDVvvqVlDARDPmGTrc~~ve~ylkk-e~phKHli~vLNKvDLVPtwvt~~Wv~~lSkeyPTiAfHAsi~nsfG 287 (572)
T KOG2423|consen 209 KVIDSSDVVVQVLDARDPMGTRCKHVEEYLKK-EKPHKHLIYVLNKVDLVPTWVTAKWVRHLSKEYPTIAFHASINNSFG 287 (572)
T ss_pred HhhcccceeEEeeeccCCcccccHHHHHHHhh-cCCcceeEEEeeccccccHHHHHHHHHHHhhhCcceeeehhhcCccc
Confidence 367899999999999998 4567789999853 4567789999999999999999999876654 3332 2444566
Q ss_pred chhhHH---HHHhhc---CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCc
Q 020346 146 SKLGLD---SLLQRL---RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRG 219 (327)
Q Consensus 146 ~~~~l~---~l~~~l---~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g 219 (327)
....+. .+.-.- +--.++|||-|++||||+||.|... .+-.+.+-+|
T Consensus 288 KgalI~llRQf~kLh~dkkqISVGfiGYPNvGKSSiINTLR~K-------------------------kVCkvAPIpG-- 340 (572)
T KOG2423|consen 288 KGALIQLLRQFAKLHSDKKQISVGFIGYPNVGKSSIINTLRKK-------------------------KVCKVAPIPG-- 340 (572)
T ss_pred hhHHHHHHHHHHhhccCccceeeeeecCCCCchHHHHHHHhhc-------------------------ccccccCCCC--
Confidence 554333 332221 3457999999999999999999983 3444443344
Q ss_pred ceeeEEEEEEEccCCCeEEeCcccCCcc
Q 020346 220 KHTTRHVSLLPLSGGGYLADTPGFNQPS 247 (327)
Q Consensus 220 ~~tt~~i~~v~q~~~~~i~Dtpg~~~~~ 247 (327)
-|+--+|+.+....++||+||+..+.
T Consensus 341 --ETKVWQYItLmkrIfLIDcPGvVyps 366 (572)
T KOG2423|consen 341 --ETKVWQYITLMKRIFLIDCPGVVYPS 366 (572)
T ss_pred --cchHHHHHHHHhceeEecCCCccCCC
Confidence 45545566666677999999987554
|
|
| >cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.24 E-value=5.3e-12 Score=115.71 Aligned_cols=35 Identities=29% Similarity=0.507 Sum_probs=27.9
Q ss_pred cCcchhhHHHHHhhcCCCEEEEEcCCCCCHHHHHHHHcC
Q 020346 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 143 s~~~~~~l~~l~~~l~g~~v~lvG~sG~GKSTLln~L~g 181 (327)
+|.+..+++++ .+++++|+||||+|||||+++|.+
T Consensus 11 sy~~~~~~~~~----~~~~~~i~GpNGsGKStll~ai~~ 45 (243)
T cd03272 11 SYKDQTVIEPF----SPKHNVVVGRNGSGKSNFFAAIRF 45 (243)
T ss_pred CcccCcccccC----CCCcEEEECCCCCCHHHHHHHHHH
Confidence 45555555554 478999999999999999999983
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.2e-12 Score=111.48 Aligned_cols=136 Identities=21% Similarity=0.288 Sum_probs=89.0
Q ss_pred HHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcceeeEEEEEEE
Q 020346 152 SLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLP 230 (327)
Q Consensus 152 ~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~tt~~i~~v~ 230 (327)
.++..+ .|+++=+|||||||||||+-.++| ..|.+|+|.++|+++...+..+ ..++.+|+.
T Consensus 17 plS~qv~aGe~~HliGPNGaGKSTLLA~lAG-------------m~~~sGsi~~~G~~l~~~~~~e-----LArhRAYLs 78 (248)
T COG4138 17 PLSGEVRAGEILHLVGPNGAGKSTLLARMAG-------------MTSGSGSIQFAGQPLEAWSATE-----LARHRAYLS 78 (248)
T ss_pred ccccccccceEEEEECCCCccHHHHHHHHhC-------------CCCCCceEEECCcchhHHhHhH-----HHHHHHHHh
Confidence 344444 799999999999999999999999 3588999999999998877654 556677777
Q ss_pred ccCCCeEEeCcccCCccccccC-----------------HhHHhhhhHHHHHhcCccccccccccc-ccccc---CC--c
Q 020346 231 LSGGGYLADTPGFNQPSLLKVT-----------------KQSLAQTFPEIKEMLKANEPAKCSFNN-CLHLG---EP--G 287 (327)
Q Consensus 231 q~~~~~i~Dtpg~~~~~l~~~~-----------------~~~l~~~~~~~~~~LSgGq~q~~~~~~-~~h~~---ep--~ 287 (327)
|. .+|-|..+....+. +-.+.+..+.....|||||-||++++. |+.+. +| .
T Consensus 79 Qq------q~p~f~mpV~~YL~L~qP~~~~a~~i~~i~~~L~l~DKL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~ 152 (248)
T COG4138 79 QQ------QTPPFAMPVWHYLTLHQPDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQ 152 (248)
T ss_pred hc------cCCcchhhhhhhhhhcCchHHHHHHHHHHHhhhcccchhhhhhhhcCcccceeeEEeEEEEEecCCCCccce
Confidence 75 34444333221111 112333444445569999999999986 55332 23 3
Q ss_pred eEEcccHH------HHHHHHHHHHHHHHhH
Q 020346 288 CVVKGDWE------RYQYYFQLLDEIRIRE 311 (327)
Q Consensus 288 ~~v~~~~~------r~~~~~~ll~e~~~~~ 311 (327)
+++.|+|- .-..+-+++.++...+
T Consensus 153 LLllDEP~~~LDvAQ~~aLdrll~~~c~~G 182 (248)
T COG4138 153 LLLLDEPMNSLDVAQQSALDRLLSALCQQG 182 (248)
T ss_pred eEEecCCCcchhHHHHHHHHHHHHHHHhCC
Confidence 45567552 3333345666665443
|
|
| >cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.8e-11 Score=109.37 Aligned_cols=135 Identities=18% Similarity=0.227 Sum_probs=75.6
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcceeeEEEEEEEccCCC--
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGG-- 235 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~tt~~i~~v~q~~~~-- 235 (327)
+|++++|+|+||+|||||+++|.+. ++.+..+....+ .....+... .....++++++..+.
T Consensus 27 ~~~~~~i~G~NGsGKSTll~~i~~~-----------l~g~~~~~~~~~-~~~~~~~~~-----~~~~~v~~~f~~~~~~~ 89 (213)
T cd03279 27 NNGLFLICGPTGAGKSTILDAITYA-----------LYGKTPRYGRQE-NLRSVFAPG-----EDTAEVSFTFQLGGKKY 89 (213)
T ss_pred ccCEEEEECCCCCCHHHHHHHheee-----------EecCccccccch-hHHHHhcCC-----CccEEEEEEEEECCeEE
Confidence 4789999999999999999999951 444444433322 111111111 145668888876533
Q ss_pred eEEeCcccCCccccc---cCHhHHhhhhHHHHHhcCccccccccccccccc---------cCCceEEcccH------HHH
Q 020346 236 YLADTPGFNQPSLLK---VTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHL---------GEPGCVVKGDW------ERY 297 (327)
Q Consensus 236 ~i~Dtpg~~~~~l~~---~~~~~l~~~~~~~~~~LSgGq~q~~~~~~~~h~---------~ep~~~v~~~~------~r~ 297 (327)
.+...+++....... +....+......-...||+||+||+++++++-. .+|+++++|+| .-.
T Consensus 90 ~~~r~~gl~~~~~~~~~~l~~g~l~~~l~~~~~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~lllDEp~~~lD~~~~ 169 (213)
T cd03279 90 RVERSRGLDYDQFTRIVLLPQGEFDRFLARPVSTLSGGETFLASLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEAL 169 (213)
T ss_pred EEEEecCCCHHHHHHhhhhhhcchHHHhcCCccccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEEEEeCCcccCCHHHH
Confidence 223333332211100 000111111111123499999999999987721 36789999855 344
Q ss_pred HHHHHHHHHHHH
Q 020346 298 QYYFQLLDEIRI 309 (327)
Q Consensus 298 ~~~~~ll~e~~~ 309 (327)
+...++++++..
T Consensus 170 ~~~~~~l~~~~~ 181 (213)
T cd03279 170 EAVATALELIRT 181 (213)
T ss_pred HHHHHHHHHHHh
Confidence 455566666644
|
They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini. |
| >cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.6e-12 Score=118.64 Aligned_cols=35 Identities=34% Similarity=0.427 Sum_probs=30.5
Q ss_pred ccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHH
Q 020346 142 CSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLI 176 (327)
Q Consensus 142 ~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLl 176 (327)
+...+..+++++++.+ +|++++|+|+||||||||+
T Consensus 3 ~~~~~~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~ 38 (226)
T cd03270 3 VRGAREHNLKNVDVDIPRNKLVVITGVSGSGKSSLA 38 (226)
T ss_pred eccchhhccccceeecCCCcEEEEEcCCCCCHHHHH
Confidence 3344567899999998 9999999999999999996
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.8e-11 Score=122.74 Aligned_cols=131 Identities=21% Similarity=0.298 Sum_probs=86.7
Q ss_pred CceeeccCcc--hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccc
Q 020346 137 YEPLFCSVES--KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (327)
Q Consensus 137 ~~~~~~s~~~--~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s 213 (327)
++.++++..+ ...++++++.+ .|+.+.|.||||||||||++.|.| +|+-++|++......
T Consensus 436 ~e~v~l~tPt~g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlgg------------LWp~~~G~l~k~~~~----- 498 (659)
T KOG0060|consen 436 FEEVSLSTPTNGDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGG------------LWPSTGGKLTKPTDG----- 498 (659)
T ss_pred eeeeeecCCCCCceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhc------------ccccCCCeEEecccC-----
Confidence 4445555544 34567799998 899999999999999999999999 999999987632110
Q ss_pred ccCCCcceeeEEEEEEEccC---CCeEEeCcccC------Cc----------cccccCHhHHhhhhH--------HHHHh
Q 020346 214 TKSGRGKHTTRHVSLLPLSG---GGYLADTPGFN------QP----------SLLKVTKQSLAQTFP--------EIKEM 266 (327)
Q Consensus 214 ~~~~~g~~tt~~i~~v~q~~---~~~i~Dtpg~~------~~----------~l~~~~~~~l~~~~~--------~~~~~ 266 (327)
-.+.+-++||.| -+++.|-.-+. .. .++++.+.++.+... +-...
T Consensus 499 --------~~~~lfflPQrPYmt~GTLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dv 570 (659)
T KOG0060|consen 499 --------GPKDLFFLPQRPYMTLGTLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDV 570 (659)
T ss_pred --------CCCceEEecCCCCccccchhheeeccCccccccccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhh
Confidence 224577888876 22222211111 10 122222222222111 11234
Q ss_pred cCccccccccccccccccCCceEEccc
Q 020346 267 LKANEPAKCSFNNCLHLGEPGCVVKGD 293 (327)
Q Consensus 267 LSgGq~q~~~~~~~~h~~ep~~~v~~~ 293 (327)
||+||+||++||+.. .++|..+++|+
T Consensus 571 LS~GEqQRLa~ARLf-y~kPk~AiLDE 596 (659)
T KOG0060|consen 571 LSPGEQQRLAFARLF-YHKPKFAILDE 596 (659)
T ss_pred cCHHHHHHHHHHHHH-hcCCceEEeec
Confidence 999999999999988 99999999995
|
|
| >PRK00093 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.14 E-value=6.5e-10 Score=110.56 Aligned_cols=105 Identities=29% Similarity=0.382 Sum_probs=73.9
Q ss_pred cccccccEEEEEeecCCCCCCh-HHHHHHHHHHHhcCCCEEEEeecCCCCcHHHHHHHHhhhhhcCCc-eeeccCcchhh
Q 020346 72 PPVANVDHLLLLFSMDQPKLEP-FALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYE-PLFCSVESKLG 149 (327)
Q Consensus 72 ~~~anvD~lliv~~~~~p~~~~-~~l~r~L~~a~~~~~~~~ivlnK~Dl~~~~~~~~~~~~~~~~~~~-~~~~s~~~~~~ 149 (327)
..+.++|.+++|+++..+.... ..+.++| ...++|+++|+||+|+.+.+.. ...+..+++. .+.+|+.++.+
T Consensus 76 ~~~~~ad~il~vvd~~~~~~~~~~~~~~~l---~~~~~piilv~NK~D~~~~~~~---~~~~~~lg~~~~~~iSa~~g~g 149 (435)
T PRK00093 76 LAIEEADVILFVVDGRAGLTPADEEIAKIL---RKSNKPVILVVNKVDGPDEEAD---AYEFYSLGLGEPYPISAEHGRG 149 (435)
T ss_pred HHHHhCCEEEEEEECCCCCCHHHHHHHHHH---HHcCCcEEEEEECccCccchhh---HHHHHhcCCCCCEEEEeeCCCC
Confidence 3568999999999987643222 2344444 3458999999999997653211 1233456764 78888887777
Q ss_pred HHHHHhhc-C-------------CCEEEEEcCCCCCHHHHHHHHcCC
Q 020346 150 LDSLLQRL-R-------------DQTTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 150 l~~l~~~l-~-------------g~~v~lvG~sG~GKSTLln~L~g~ 182 (327)
++++-..+ . .-.++|+|.+|+|||||+|.|++.
T Consensus 150 v~~l~~~I~~~~~~~~~~~~~~~~~~v~ivG~~n~GKStlin~ll~~ 196 (435)
T PRK00093 150 IGDLLDAILEELPEEEEEDEEDEPIKIAIIGRPNVGKSSLINALLGE 196 (435)
T ss_pred HHHHHHHHHhhCCccccccccccceEEEEECCCCCCHHHHHHHHhCC
Confidence 66654443 1 247999999999999999999984
|
|
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.7e-11 Score=120.06 Aligned_cols=124 Identities=20% Similarity=0.217 Sum_probs=78.8
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcceeeEEEEEEEc----cC
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPL----SG 233 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~tt~~i~~v~q----~~ 233 (327)
.|++++++||||.||||++++|+| ..+|++|+ . ....++|=|| +.
T Consensus 366 ~gEvigilGpNgiGKTTFvk~LAG------------~ikPdeg~--~-----------------~~~~vSyKPQyI~~~~ 414 (591)
T COG1245 366 DGEVIGILGPNGIGKTTFVKLLAG------------VIKPDEGS--E-----------------EDLKVSYKPQYISPDY 414 (591)
T ss_pred cceEEEEECCCCcchHHHHHHHhc------------cccCCCCC--C-----------------ccceEeecceeecCCC
Confidence 579999999999999999999999 88999986 1 1123344444 22
Q ss_pred CCeEEeC-----cc-cCCcc--ccccCHhHHhhhhHHHHHhcCccccccccccccccccCCceEEcccH-------HHHH
Q 020346 234 GGYLADT-----PG-FNQPS--LLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDW-------ERYQ 298 (327)
Q Consensus 234 ~~~i~Dt-----pg-~~~~~--l~~~~~~~l~~~~~~~~~~LSgGq~q~~~~~~~~h~~ep~~~v~~~~-------~r~~ 298 (327)
.+++.+. +. +.... .+-+..-.+...++.-...|||||.||++++-|+ ..|.++.|+|+| ||+.
T Consensus 415 ~gtV~~~l~~~~~~~~~~s~~~~ei~~pl~l~~i~e~~v~~LSGGELQRvaIaa~L-~reADlYllDEPSA~LDvEqR~~ 493 (591)
T COG1245 415 DGTVEDLLRSAIRSAFGSSYFKTEIVKPLNLEDLLERPVDELSGGELQRVAIAAAL-SREADLYLLDEPSAYLDVEQRII 493 (591)
T ss_pred CCcHHHHHHHhhhhhcccchhHHhhcCccchHHHHhcccccCCchhHHHHHHHHHh-ccccCEEEecCchhhccHHHHHH
Confidence 2221110 00 11111 1112222334444444556999999999999999 999999999976 4666
Q ss_pred HHHHHHHHHHHhHHH
Q 020346 299 YYFQLLDEIRIREEF 313 (327)
Q Consensus 299 ~~~~ll~e~~~~~~~ 313 (327)
..+.+.+=+..++++
T Consensus 494 vakvIRR~~e~~~kt 508 (591)
T COG1245 494 VAKVIRRFIENNEKT 508 (591)
T ss_pred HHHHHHHHHhhcCce
Confidence 665555545444443
|
|
| >TIGR03594 GTPase_EngA ribosome-associated GTPase EngA | Back alignment and domain information |
|---|
Probab=99.10 E-value=9.7e-10 Score=108.95 Aligned_cols=105 Identities=26% Similarity=0.454 Sum_probs=75.7
Q ss_pred cccccccEEEEEeecCCCCCCh-HHHHHHHHHHHhcCCCEEEEeecCCCCcHHHHHHHHhhhhhcCC-ceeeccCcchhh
Q 020346 72 PPVANVDHLLLLFSMDQPKLEP-FALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGY-EPLFCSVESKLG 149 (327)
Q Consensus 72 ~~~anvD~lliv~~~~~p~~~~-~~l~r~L~~a~~~~~~~~ivlnK~Dl~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~ 149 (327)
..+.++|.+++|+++..+.... ..+.++| +..++|+++|.||+|+.+.+.. ...+..+++ +.+.+|+.+..+
T Consensus 74 ~~~~~ad~vl~vvD~~~~~~~~d~~i~~~l---~~~~~piilVvNK~D~~~~~~~---~~~~~~lg~~~~~~vSa~~g~g 147 (429)
T TIGR03594 74 IAIEEADVILFVVDGREGLTPEDEEIAKWL---RKSGKPVILVANKIDGKKEDAV---AAEFYSLGFGEPIPISAEHGRG 147 (429)
T ss_pred HHHhhCCEEEEEEeCCCCCCHHHHHHHHHH---HHhCCCEEEEEECccCCccccc---HHHHHhcCCCCeEEEeCCcCCC
Confidence 3568999999999987643221 2344554 4468999999999998764422 123456787 688999988777
Q ss_pred HHHHHhhc----C--C---------CEEEEEcCCCCCHHHHHHHHcCC
Q 020346 150 LDSLLQRL----R--D---------QTTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 150 l~~l~~~l----~--g---------~~v~lvG~sG~GKSTLln~L~g~ 182 (327)
++++...+ + . -.++++|.+|+|||||+|.|++.
T Consensus 148 v~~ll~~i~~~l~~~~~~~~~~~~~~~v~ivG~~~~GKSsLin~l~~~ 195 (429)
T TIGR03594 148 IGDLLDAILELLPEEEEEEEEEDGPIKIAIIGRPNVGKSTLVNALLGE 195 (429)
T ss_pred hHHHHHHHHHhcCcccccccccCCceEEEEECCCCCCHHHHHHHHHCC
Confidence 76654432 1 1 26999999999999999999984
|
EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability. |
| >KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.09 E-value=4.1e-10 Score=105.85 Aligned_cols=149 Identities=29% Similarity=0.351 Sum_probs=92.8
Q ss_pred ccccccEEEEEeecCCCCCChH-HHHHHHHHHHhcCCCEEEEeecCCCCcHHHHHHHHhhhhhcCCceee-ccCcch---
Q 020346 73 PVANVDHLLLLFSMDQPKLEPF-ALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLF-CSVESK--- 147 (327)
Q Consensus 73 ~~anvD~lliv~~~~~p~~~~~-~l~r~L~~a~~~~~~~~ivlnK~Dl~~~~~~~~~~~~~~~~~~~~~~-~s~~~~--- 147 (327)
...++|.++-|-+++.|..+-. .+++++ ..++.++|+||+||++..+.......++.-.+.... .+....
T Consensus 43 ~l~~~D~iiEvrDaRiPLssrn~~~~~~~-----~~k~riiVlNK~DLad~~~~k~~iq~~~~~~~~~~~~~~c~~~~~~ 117 (335)
T KOG2485|consen 43 RLPLVDCIIEVRDARIPLSSRNELFQDFL-----PPKPRIIVLNKMDLADPKEQKKIIQYLEWQNLESYIKLDCNKDCNK 117 (335)
T ss_pred hcccccEEEEeeccccCCccccHHHHHhc-----CCCceEEEEecccccCchhhhHHHHHHHhhcccchhhhhhhhhhhh
Confidence 3579999999999999976644 456666 378999999999999976555555544432222111 111111
Q ss_pred ---h---hHHHHHhhc--------CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccc
Q 020346 148 ---L---GLDSLLQRL--------RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (327)
Q Consensus 148 ---~---~l~~l~~~l--------~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s 213 (327)
. .+..++..+ .+-.+.|||.||+|||||||++...... - .....+.
T Consensus 118 ~v~~l~~il~~~~~~l~r~irt~~~~~~vmVvGvPNVGKSsLINa~r~~~Lr-----------k---------~k~a~vG 177 (335)
T KOG2485|consen 118 QVSPLLKILTILSEELVRFIRTLNSEYNVMVVGVPNVGKSSLINALRNVHLR-----------K---------KKAARVG 177 (335)
T ss_pred ccccHHHHHHHHHHHHHHhhcccCCceeEEEEcCCCCChHHHHHHHHHHHhh-----------h---------ccceecc
Confidence 1 111222221 2347899999999999999999873210 0 1112223
Q ss_pred ccCCCcceeeEEEEEE---EccCCCeEEeCcccCCccccc
Q 020346 214 TKSGRGKHTTRHVSLL---PLSGGGYLADTPGFNQPSLLK 250 (327)
Q Consensus 214 ~~~~~g~~tt~~i~~v---~q~~~~~i~Dtpg~~~~~l~~ 250 (327)
..+| .|+.++-. .-.+..|++||||+..+...+
T Consensus 178 ~~pG----VT~~V~~~iri~~rp~vy~iDTPGil~P~I~~ 213 (335)
T KOG2485|consen 178 AEPG----VTRRVSERIRISHRPPVYLIDTPGILVPSIVD 213 (335)
T ss_pred CCCC----ceeeehhheEeccCCceEEecCCCcCCCCCCC
Confidence 3333 77777642 223467999999999876543
|
|
| >cd04466 S1_YloQ_GTPase S1_YloQ_GTPase: YloQ GTase family (also known as YjeQ and CpgA), S1-like RNA-binding domain | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.8e-10 Score=84.28 Aligned_cols=68 Identities=24% Similarity=0.318 Sum_probs=54.1
Q ss_pred CeeEEEecCCCCceeccCCCCcEEEEEEcccccccCCCcccCcEEEEceecccCCceEEeeeccccccccc
Q 020346 1 MRVIVQQSEPSRTSDCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILD 71 (327)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vGD~V~~~~~~~~~~~~~i~~i~~R~~~l~r 71 (327)
|.|+|.....+.|.+.. +++..+.|.++|++++....++|||||.++..+ ++.++|++++||+|.|.|
T Consensus 1 ~~grVv~~~~~~~~v~~-~~~~~~~~~~~~~~~~~~~~~~VGD~V~~~~~~--~~~~~I~~vl~R~s~l~R 68 (68)
T cd04466 1 MEGLIIKAIGGFYYVET-EDGKIYECRLRGKFRKDKNPPAVGDRVEFEPED--DGEGVIEEILPRKNLLIR 68 (68)
T ss_pred CCEEEEEEECCEEEEEe-CCCeEEEEEEccccccCCCCCCCCcEEEEEECC--CCcEEEEEEeccceEEEC
Confidence 67899999955555553 346789999999987656789999999997532 456799999999999865
|
Proteins in the YloQ GTase family bind the ribosome and have GTPase activity. The precise role of this family is unknown. The protein structure is composed of three domains: an N-terminal S1 domain, a central GTPase domain, and a C-terminal zinc finger domain. This N-terminal S1 domain binds ssRNA. The central GTPase domain contains nucleotide-binding signature motifs: G1 (walker A), G3 (walker B) and G4 motifs. Experiments show that the bacterial YloQ and YjeQ proteins have low intrinsic GTPase activity. The C-terminal zinc-finger domain has structural similarity to a portion of the DNA-repair protein Rad51. This suggests a possible role for this GTPase as a regulator of translation, perhaps as a translation initiation factor. This family is classified based on the N-terminal S1 domain. |
| >PRK03003 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.1e-09 Score=110.51 Aligned_cols=104 Identities=30% Similarity=0.394 Sum_probs=72.1
Q ss_pred ccccccEEEEEeecCCCCCC-hHHHHHHHHHHHhcCCCEEEEeecCCCCcHHHHHHHHhhhhhcCC-ceeeccCcchhhH
Q 020346 73 PVANVDHLLLLFSMDQPKLE-PFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGY-EPLFCSVESKLGL 150 (327)
Q Consensus 73 ~~anvD~lliv~~~~~p~~~-~~~l~r~L~~a~~~~~~~~ivlnK~Dl~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~l 150 (327)
.+.++|.+++|+++..+... ...+.+++ ...++|+++|.||+|+...+.. ...+..+++ ..+.+|+.++.++
T Consensus 114 ~~~~aD~il~VvD~~~~~s~~~~~i~~~l---~~~~~piilV~NK~Dl~~~~~~---~~~~~~~g~~~~~~iSA~~g~gi 187 (472)
T PRK03003 114 AMRTADAVLFVVDATVGATATDEAVARVL---RRSGKPVILAANKVDDERGEAD---AAALWSLGLGEPHPVSALHGRGV 187 (472)
T ss_pred HHHhCCEEEEEEECCCCCCHHHHHHHHHH---HHcCCCEEEEEECccCCccchh---hHHHHhcCCCCeEEEEcCCCCCc
Confidence 46799999999999864322 22233333 4568999999999999643211 122234455 4578888887777
Q ss_pred HHHHhhc-----C----------CCEEEEEcCCCCCHHHHHHHHcCC
Q 020346 151 DSLLQRL-----R----------DQTTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 151 ~~l~~~l-----~----------g~~v~lvG~sG~GKSTLln~L~g~ 182 (327)
+++...+ + ...++|+|.+|||||||+|.|++.
T Consensus 188 ~eL~~~i~~~l~~~~~~~~~~~~~~kI~iiG~~nvGKSSLin~l~~~ 234 (472)
T PRK03003 188 GDLLDAVLAALPEVPRVGSASGGPRRVALVGKPNVGKSSLLNKLAGE 234 (472)
T ss_pred HHHHHHHHhhcccccccccccccceEEEEECCCCCCHHHHHHHHhCC
Confidence 6654332 1 137999999999999999999984
|
|
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.2e-10 Score=126.01 Aligned_cols=149 Identities=13% Similarity=0.164 Sum_probs=102.0
Q ss_pred cchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcceee
Q 020346 145 ESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTT 223 (327)
Q Consensus 145 ~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~tt 223 (327)
++++.|++++=.+ +|..+||+|+||||||||||.|+|+. .-=..+|+|+++|.+..+.+ ..
T Consensus 802 ~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~----------t~G~I~Gdi~i~G~p~~q~t--------F~ 863 (1391)
T KOG0065|consen 802 GTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRK----------TGGYIEGDILISGFPKDQET--------FA 863 (1391)
T ss_pred cceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCc----------ccceEEeEEEECCeeCchhh--------hc
Confidence 4567788887776 89999999999999999999999964 22356899999999877532 66
Q ss_pred EEEEEEEccC----CCeEEeCcccCCccc--cccCHhHHhhhhHH-------------HHHh----cCcccccccccccc
Q 020346 224 RHVSLLPLSG----GGYLADTPGFNQPSL--LKVTKQSLAQTFPE-------------IKEM----LKANEPAKCSFNNC 280 (327)
Q Consensus 224 ~~i~~v~q~~----~~~i~Dtpg~~~~~l--~~~~~~~l~~~~~~-------------~~~~----LSgGq~q~~~~~~~ 280 (327)
+.+||+.|.+ ..++.++..++.... ..++.++..+..++ +... ||..|++|+.++--
T Consensus 864 R~~GYvqQ~DiH~~~~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G~GLs~eQRKrLTIgVE 943 (1391)
T KOG0065|consen 864 RVSGYVEQQDIHSPELTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPGSGLSTEQRKRLTIGVE 943 (1391)
T ss_pred cccceeecccccCcccchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCCCCCCHHHhceeeEEEE
Confidence 7899999975 224444433332110 12222222222222 2222 89999999999988
Q ss_pred ccccCCceEE-cccH------HHHHHHHHHHHHHHHhHH
Q 020346 281 LHLGEPGCVV-KGDW------ERYQYYFQLLDEIRIREE 312 (327)
Q Consensus 281 ~h~~ep~~~v-~~~~------~r~~~~~~ll~e~~~~~~ 312 (327)
+ +..|+.+| +|+| +--.+..++++.+.+.++
T Consensus 944 L-vA~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~tGq 981 (1391)
T KOG0065|consen 944 L-VANPSSILFLDEPTSGLDSQAAAIVMRFLRKLADTGQ 981 (1391)
T ss_pred E-ecCCceeEEecCCCCCccHHHHHHHHHHHHHHHhcCC
Confidence 8 88996665 8866 455666677777766554
|
|
| >cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains | Back alignment and domain information |
|---|
Probab=99.04 E-value=5.2e-10 Score=100.65 Aligned_cols=125 Identities=17% Similarity=0.220 Sum_probs=75.2
Q ss_pred CEEEEEcCCCCCHHHHHHHHc----CCCCCCCcccccccccccccceeecceeeccccccCCCcceeeEEEEEEEccC-C
Q 020346 160 QTTVIVGPSGVGKSSLINALR----SSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSG-G 234 (327)
Q Consensus 160 ~~v~lvG~sG~GKSTLln~L~----g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~tt~~i~~v~q~~-~ 234 (327)
.+++|+|+||+|||||+++|. | ...|+.|.+..+...+.. . . ....++++++.. +
T Consensus 23 g~~~i~G~NGsGKTTLl~ai~~~l~G------------~~~~~~~~~~~~~~~i~~-~--~-----~~~~v~~~f~~~~~ 82 (204)
T cd03240 23 PLTLIVGQNGAGKTTIIEALKYALTG------------ELPPNSKGGAHDPKLIRE-G--E-----VRAQVKLAFENANG 82 (204)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHcC------------CCCcccccccchHHHHhC-C--C-----CcEEEEEEEEeCCC
Confidence 399999999999999999994 7 556777765411111111 1 1 345677777764 2
Q ss_pred C--eEEeCcccCCcccccc---CHhHHhhhhHHHHHhcCcccccc------ccccccccccCCceEEcccH------HHH
Q 020346 235 G--YLADTPGFNQPSLLKV---TKQSLAQTFPEIKEMLKANEPAK------CSFNNCLHLGEPGCVVKGDW------ERY 297 (327)
Q Consensus 235 ~--~i~Dtpg~~~~~l~~~---~~~~l~~~~~~~~~~LSgGq~q~------~~~~~~~h~~ep~~~v~~~~------~r~ 297 (327)
- .+.... ...+++ ..++...........||+||+|+ +++++++ ...|++++.|+| ...
T Consensus 83 ~~~~v~r~~----~~~~~~~~~~~~~~~~~~~~~~~~LS~G~~~~~~la~rlala~al-~~~p~illlDEP~~~LD~~~~ 157 (204)
T cd03240 83 KKYTITRSL----AILENVIFCHQGESNWPLLDMRGRCSGGEKVLASLIIRLALAETF-GSNCGILALDEPTTNLDEENI 157 (204)
T ss_pred CEEEEEEEh----hHhhceeeechHHHHHHHhcCccccCccHHHHHHHHHHHHHHHHh-ccCCCEEEEcCCccccCHHHH
Confidence 1 111111 111111 11222222222334599999996 6777777 889999999965 344
Q ss_pred H-HHHHHHHHHHH
Q 020346 298 Q-YYFQLLDEIRI 309 (327)
Q Consensus 298 ~-~~~~ll~e~~~ 309 (327)
+ .+.+++.++..
T Consensus 158 ~~~l~~~l~~~~~ 170 (204)
T cd03240 158 EESLAEIIEERKS 170 (204)
T ss_pred HHHHHHHHHHHHh
Confidence 5 66677776654
|
The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence. |
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.3e-10 Score=115.80 Aligned_cols=125 Identities=17% Similarity=0.203 Sum_probs=75.7
Q ss_pred eeeccCcch-hhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccC
Q 020346 139 PLFCSVESK-LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKS 216 (327)
Q Consensus 139 ~~~~s~~~~-~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~ 216 (327)
.+.|.|.++ ..+++++|-+ .+..+++||||||||||||+++.| ...|+.|.+.-+
T Consensus 394 nv~F~y~~~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~g------------dl~p~~G~vs~~----------- 450 (614)
T KOG0927|consen 394 NVSFGYSDNPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITG------------DLQPTIGMVSRH----------- 450 (614)
T ss_pred ccccCCCCcchhhhhhhcccCcccceeEecCCCCchhhhHHHHhh------------cccccccccccc-----------
Confidence 345555543 4667777776 788999999999999999999999 778888875421
Q ss_pred CCcceeeEEEEEEEccCCC-eEEeC-------cccCC-cc-------ccccCHhHHhhhhHHHHHhcCcccccccccccc
Q 020346 217 GRGKHTTRHVSLLPLSGGG-YLADT-------PGFNQ-PS-------LLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNC 280 (327)
Q Consensus 217 ~~g~~tt~~i~~v~q~~~~-~i~Dt-------pg~~~-~~-------l~~~~~~~l~~~~~~~~~~LSgGq~q~~~~~~~ 280 (327)
..-++.++.|.... .-.|- |.+.. .. +.......-.... -.+.||.||+.|+.|+..
T Consensus 451 -----~H~~~~~y~Qh~~e~ldl~~s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~--p~~~LS~Gqr~rVlFa~l 523 (614)
T KOG0927|consen 451 -----SHNKLPRYNQHLAEQLDLDKSSLEFMMPKFPDEKELEEMRSILGRFGLTGDAQVV--PMSQLSDGQRRRVLFARL 523 (614)
T ss_pred -----ccccchhhhhhhHhhcCcchhHHHHHHHhccccchHHHHHHHHHHhCCCcccccc--chhhcccccchhHHHHHH
Confidence 22233334442100 00000 11110 00 0111111001111 134499999999999988
Q ss_pred ccccCCceEEcccH
Q 020346 281 LHLGEPGCVVKGDW 294 (327)
Q Consensus 281 ~h~~ep~~~v~~~~ 294 (327)
. +..|.++|+|+|
T Consensus 524 ~-~kqP~lLlLDEP 536 (614)
T KOG0927|consen 524 A-VKQPHLLLLDEP 536 (614)
T ss_pred H-hcCCcEEEecCC
Confidence 7 999999999965
|
|
| >cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.00 E-value=8.3e-10 Score=102.11 Aligned_cols=61 Identities=20% Similarity=0.192 Sum_probs=41.9
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCccccccccccc-ccceeecce-eeccccccCCCcceeeEEEEEEEccC
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPI-LGSKWFEDQ-RVGEVSTKSGRGKHTTRHVSLLPLSG 233 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~-~G~i~~~g~-~v~~~s~~~~~g~~tt~~i~~v~q~~ 233 (327)
....++|||+||||||||+.+|.+ ++.|+ .|++.+.+. ++-..+ +........+++++|++
T Consensus 24 ~~~~~~IvG~NGsGKStll~Ai~~------------ll~~~~~~~~r~~~~~~li~~~---~~~~~~~~~v~~~fq~~ 86 (251)
T cd03273 24 DPQFNAITGLNGSGKSNILDAICF------------VLGITNLSTVRASNLQDLIYKR---GQAGITKASVTIVFDNS 86 (251)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH------------HhcccccccccccCHHHHhhcC---CCCCCcEEEEEEEEEcC
Confidence 467899999999999999999998 66665 457777665 321111 11112455788888864
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.4e-10 Score=113.63 Aligned_cols=115 Identities=21% Similarity=0.302 Sum_probs=78.7
Q ss_pred hHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcceeeEEEE
Q 020346 149 GLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVS 227 (327)
Q Consensus 149 ~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~tt~~i~ 227 (327)
++..+++.+ +|....|+||||||||||.+.|.| +|+...|... ++ ...++-
T Consensus 497 vv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILgg------------LWPvy~g~L~--------~P--------~~~~mF 548 (728)
T KOG0064|consen 497 LVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGG------------LWPVYNGLLS--------IP--------RPNNIF 548 (728)
T ss_pred eecceeEEecCCceEEEECCCCccHHHHHHHHhc------------cCcccCCeee--------cC--------CCcceE
Confidence 456777777 899999999999999999999999 9988777533 11 334588
Q ss_pred EEEccC---CCeEEeCcccC------------Ccc----ccccCHhHHhh------hhHHHHHhcCcccccccccccccc
Q 020346 228 LLPLSG---GGYLADTPGFN------------QPS----LLKVTKQSLAQ------TFPEIKEMLKANEPAKCSFNNCLH 282 (327)
Q Consensus 228 ~v~q~~---~~~i~Dtpg~~------------~~~----l~~~~~~~l~~------~~~~~~~~LSgGq~q~~~~~~~~h 282 (327)
|+||.+ .+++.|-.-+. +.. +..+..+.+.+ ...+-...|||||+||+.+|+..
T Consensus 549 YIPQRPYms~gtlRDQIIYPdS~e~~~~kg~~d~dL~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~~mARm~- 627 (728)
T KOG0064|consen 549 YIPQRPYMSGGTLRDQIIYPDSSEQMKRKGYTDQDLEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQRMGMARMF- 627 (728)
T ss_pred eccCCCccCcCcccceeecCCcHHHHHhcCCCHHHHHHHHHHhhHHHHHHhccChhhhccHHhhccchHHHHHHHHHHH-
Confidence 899976 33444432222 111 11122222221 11222345999999999999988
Q ss_pred ccCCceEEcc
Q 020346 283 LGEPGCVVKG 292 (327)
Q Consensus 283 ~~ep~~~v~~ 292 (327)
.|.|..+|+|
T Consensus 628 yHrPkyalLD 637 (728)
T KOG0064|consen 628 YHRPKYALLD 637 (728)
T ss_pred hcCcchhhhh
Confidence 9999999988
|
|
| >PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed | Back alignment and domain information |
|---|
Probab=98.97 E-value=4.4e-09 Score=111.10 Aligned_cols=104 Identities=27% Similarity=0.368 Sum_probs=72.6
Q ss_pred ccccccEEEEEeecCCCCCChH-HHHHHHHHHHhcCCCEEEEeecCCCCcHHHHHHHHhhhhhcCC-ceeeccCcchhhH
Q 020346 73 PVANVDHLLLLFSMDQPKLEPF-ALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGY-EPLFCSVESKLGL 150 (327)
Q Consensus 73 ~~anvD~lliv~~~~~p~~~~~-~l~r~L~~a~~~~~~~~ivlnK~Dl~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~l 150 (327)
.+.++|.+++|+++..+..... .+.++| +..++|+++|+||+|+...... ...+..+++ ..+.+|+.+..++
T Consensus 351 ~~~~aD~iL~VvDa~~~~~~~d~~i~~~L---r~~~~pvIlV~NK~D~~~~~~~---~~~~~~lg~~~~~~iSA~~g~GI 424 (712)
T PRK09518 351 AVSLADAVVFVVDGQVGLTSTDERIVRML---RRAGKPVVLAVNKIDDQASEYD---AAEFWKLGLGEPYPISAMHGRGV 424 (712)
T ss_pred HHHhCCEEEEEEECCCCCCHHHHHHHHHH---HhcCCCEEEEEECcccccchhh---HHHHHHcCCCCeEEEECCCCCCc
Confidence 4689999999999875422221 233333 4578999999999998654221 122333455 4677888888777
Q ss_pred HHHHhhc-----C----C--------CEEEEEcCCCCCHHHHHHHHcCC
Q 020346 151 DSLLQRL-----R----D--------QTTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 151 ~~l~~~l-----~----g--------~~v~lvG~sG~GKSTLln~L~g~ 182 (327)
+++...+ . . ..++|+|.+|||||||+|.|++.
T Consensus 425 ~eLl~~i~~~l~~~~~~~~a~~~~~~~kI~ivG~~nvGKSSLin~l~~~ 473 (712)
T PRK09518 425 GDLLDEALDSLKVAEKTSGFLTPSGLRRVALVGRPNVGKSSLLNQLTHE 473 (712)
T ss_pred hHHHHHHHHhcccccccccccCCCCCcEEEEECCCCCCHHHHHHHHhCc
Confidence 6654432 1 1 37999999999999999999984
|
|
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.97 E-value=3.4e-10 Score=113.38 Aligned_cols=145 Identities=14% Similarity=0.187 Sum_probs=100.5
Q ss_pred hHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcceeeEEEE
Q 020346 149 GLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVS 227 (327)
Q Consensus 149 ~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~tt~~i~ 227 (327)
.+++++|.+ +|++++|.|--|+|+|-|+++|.| +.++.+|+|.++|+++.-.+.... ....++
T Consensus 274 ~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG------------~~~~~~G~i~l~G~~v~~~sp~~A----i~~Gi~ 337 (500)
T COG1129 274 KVRDVSFTVRAGEILGIAGLVGAGRTELARALFG------------ARPASSGEILLDGKPVRIRSPRDA----IKAGIA 337 (500)
T ss_pred ceeCceeEEeCCcEEEEeccccCCHHHHHHHHhC------------CCcCCCceEEECCEEccCCCHHHH----HHcCCE
Confidence 478899988 999999999999999999999999 778999999999999877664433 566789
Q ss_pred EEEccC--CCe-----EEeCcccC---Ccccc-ccCHhHHhhhhH--------------HHHHhcCcccccccccccccc
Q 020346 228 LLPLSG--GGY-----LADTPGFN---QPSLL-KVTKQSLAQTFP--------------EIKEMLKANEPAKCSFNNCLH 282 (327)
Q Consensus 228 ~v~q~~--~~~-----i~Dtpg~~---~~~l~-~~~~~~l~~~~~--------------~~~~~LSgGq~q~~~~~~~~h 282 (327)
|+|-+. .+. +.++..+. ..... -+.......... .....||||.||++.+++++
T Consensus 338 ~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQKVvlarwL- 416 (500)
T COG1129 338 YVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQKVVLARWL- 416 (500)
T ss_pred eCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCchhhhhHHHHHHH-
Confidence 998764 222 22222221 00000 011111111111 11234999999999999999
Q ss_pred ccCCceEEcccHH-------HHHHHHHHHHHHHHhH
Q 020346 283 LGEPGCVVKGDWE-------RYQYYFQLLDEIRIRE 311 (327)
Q Consensus 283 ~~ep~~~v~~~~~-------r~~~~~~ll~e~~~~~ 311 (327)
..+|.++++|+|. .+++| +++.++...+
T Consensus 417 ~~~p~vLilDEPTRGIDVGAK~eIy-~li~~lA~~G 451 (500)
T COG1129 417 ATDPKVLILDEPTRGIDVGAKAEIY-RLIRELAAEG 451 (500)
T ss_pred hcCCCEEEECCCCcCcccchHHHHH-HHHHHHHHCC
Confidence 7799999999885 66666 5566665544
|
|
| >cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=98.94 E-value=7.3e-10 Score=100.36 Aligned_cols=34 Identities=29% Similarity=0.520 Sum_probs=29.2
Q ss_pred cCcchhhHHHHHhhcCCCEEEEEcCCCCCHHHHHHHHc
Q 020346 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALR 180 (327)
Q Consensus 143 s~~~~~~l~~l~~~l~g~~v~lvG~sG~GKSTLln~L~ 180 (327)
+|+...+++++++ ++++|+|||||||||||++|.
T Consensus 13 ~~~~~~~l~~~~~----~i~~ivGpNGaGKSTll~~i~ 46 (212)
T cd03274 13 SYAGEQVIGPFHK----SFSAIVGPNGSGKSNVIDSML 46 (212)
T ss_pred cCCCCeeeccCCC----CeEEEECCCCCCHHHHHHHHH
Confidence 5667777777765 789999999999999999987
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=98.85 E-value=8.4e-10 Score=103.11 Aligned_cols=34 Identities=35% Similarity=0.406 Sum_probs=29.8
Q ss_pred chhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHH
Q 020346 146 SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINAL 179 (327)
Q Consensus 146 ~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L 179 (327)
+...|++++..+ .|..++|.|+||||||||++.+
T Consensus 7 ~~~nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~ 41 (261)
T cd03271 7 RENNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDT 41 (261)
T ss_pred chhcCCCceeeccCCcEEEEECCCCCchHHHHHHH
Confidence 345788888887 7999999999999999999865
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >cd04451 S1_IF1 S1_IF1: Translation Initiation Factor IF1, S1-like RNA-binding domain | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.3e-08 Score=74.84 Aligned_cols=58 Identities=24% Similarity=0.279 Sum_probs=44.6
Q ss_pred CeeEEEecCC-CCceeccCCCCcEEEEEEcccccccCCCcccCcEEEEceecccCCceEE
Q 020346 1 MRVIVQQSEP-SRTSDCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMI 59 (327)
Q Consensus 1 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vGD~V~~~~~~~~~~~~~i 59 (327)
|+|+|++..+ |+|+|.. ++|..+.|.+||+|++.+..++|||+|.++....+++++.|
T Consensus 3 ~~G~Vi~~~~g~~~~V~~-~~g~~~~c~~rGklr~~~~~~~vGD~V~~~~~~~~~~~g~I 61 (64)
T cd04451 3 MEGVVTEALPNAMFRVEL-ENGHEVLAHISGKMRMNYIRILPGDRVKVELSPYDLTKGRI 61 (64)
T ss_pred EEEEEEEEeCCCEEEEEe-CCCCEEEEEECceeecCCcccCCCCEEEEEEeecCCCEEEE
Confidence 7899999996 5556654 57889999999999866678999999999953222345554
|
IF1 contains an S1-like RNA-binding domain, which is found in a wide variety of RNA-associated proteins. Translation initiation includes a number of interrelated steps preceding the formation of the first peptide bond. In Escherichia coli, the initiation mechanism requires, in addition to mRNA, fMet-tRNA, and ribosomal subunits, the presence of three additional proteins (initiation factors IF1, IF2, and IF3) and at least one GTP molecule. The three initiation factors influence both the kinetics and the stability of ternary complex formation. IF1 is the smallest of the three factors. IF1 enhances the rate of 70S ribosome subunit association and dissociation and the interaction of 30S ribosomal subunit with IF2 and IF3. It stimulates 30S complex formation. In addition, by binding to the A-site of the 30S ribosomal subunit, IF1 may contribute to the fidelity of the selection of the initiation site of th |
| >COG0218 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.6e-08 Score=90.07 Aligned_cols=62 Identities=31% Similarity=0.472 Sum_probs=50.7
Q ss_pred CCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcceeeEEEEEEEccCCCeEE
Q 020346 159 DQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLA 238 (327)
Q Consensus 159 g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~tt~~i~~v~q~~~~~i~ 238 (327)
+--++++|.||||||||||+|.++ +.+...|..+| .|+.+-++...+...++
T Consensus 24 ~~EIaF~GRSNVGKSSlIN~l~~~------------------------k~LArtSktPG----rTq~iNff~~~~~~~lV 75 (200)
T COG0218 24 LPEIAFAGRSNVGKSSLINALTNQ------------------------KNLARTSKTPG----RTQLINFFEVDDELRLV 75 (200)
T ss_pred CcEEEEEccCcccHHHHHHHHhCC------------------------cceeecCCCCC----ccceeEEEEecCcEEEE
Confidence 456999999999999999999994 23556666677 78889888887778899
Q ss_pred eCcccCCccc
Q 020346 239 DTPGFNQPSL 248 (327)
Q Consensus 239 Dtpg~~~~~l 248 (327)
|.||+.-...
T Consensus 76 DlPGYGyAkv 85 (200)
T COG0218 76 DLPGYGYAKV 85 (200)
T ss_pred eCCCcccccC
Confidence 9999986443
|
|
| >cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis | Back alignment and domain information |
|---|
Probab=98.78 E-value=2.4e-09 Score=86.75 Aligned_cols=62 Identities=21% Similarity=0.247 Sum_probs=49.0
Q ss_pred hhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcceeeEEE
Q 020346 148 LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHV 226 (327)
Q Consensus 148 ~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~tt~~i 226 (327)
.+++++++.+ +|+.++|+||||||||||+++|.. |++.++|.++...+... ..+..
T Consensus 3 ~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~~------------------G~i~~~g~di~~~~~~~-----~~~~~ 59 (107)
T cd00820 3 TSLHGVLVDVYGKVGVLITGDSGIGKTELALELIK------------------RKHRLVGDDNVEIREDS-----KDELI 59 (107)
T ss_pred eEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhhC------------------CeEEEeeEeHHHhhhhh-----cCCEE
Confidence 4577888887 779999999999999999999863 78999999988776543 34456
Q ss_pred EEEEcc
Q 020346 227 SLLPLS 232 (327)
Q Consensus 227 ~~v~q~ 232 (327)
++.||.
T Consensus 60 ~~~~q~ 65 (107)
T cd00820 60 GRNPEL 65 (107)
T ss_pred EEechh
Confidence 666664
|
It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural |
| >PRK00276 infA translation initiation factor IF-1; Validated | Back alignment and domain information |
|---|
Probab=98.75 E-value=2e-08 Score=75.69 Aligned_cols=59 Identities=27% Similarity=0.281 Sum_probs=46.9
Q ss_pred CeeEEEecCCC-CceeccCCCCcEEEEEEcccccccCCCcccCcEEEEceecccCCceEEe
Q 020346 1 MRVIVQQSEPS-RTSDCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIE 60 (327)
Q Consensus 1 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vGD~V~~~~~~~~~~~~~i~ 60 (327)
|.|+|++..+| +|+|.. ++|..+.|.++|++++.+..+.|||+|.+++...++..|.|.
T Consensus 9 ~~G~Vi~~~~~~~y~V~~-~~g~~~~c~~~Gklr~~~i~i~vGD~V~ve~~~~~~~~g~Iv 68 (72)
T PRK00276 9 MEGTVVEALPNAMFRVEL-ENGHEVLAHISGKMRKNYIRILPGDKVTVELSPYDLTKGRIT 68 (72)
T ss_pred EEEEEEEEcCCCEEEEEe-CCCCEEEEEEccceeeCCcccCCCCEEEEEEcccCCCeEEEE
Confidence 68999999988 667753 578899999999999777889999999999533234456554
|
|
| >COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.72 E-value=4.9e-09 Score=102.08 Aligned_cols=126 Identities=16% Similarity=0.271 Sum_probs=75.8
Q ss_pred hhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcceeeEEE
Q 020346 148 LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHV 226 (327)
Q Consensus 148 ~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~tt~~i 226 (327)
.+++++++.+ +|+.++|+|+||+|||||+++|+|... .-.+.-|+|++|.|-+ +.+.+ .
T Consensus 397 yvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~----~~~ee~y~p~sg~v~v---p~nt~-------------~ 456 (593)
T COG2401 397 YVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQK----GRGEEKYRPDSGKVEV---PKNTV-------------S 456 (593)
T ss_pred eeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhh----cccccccCCCCCceec---cccch-------------h
Confidence 3577888887 899999999999999999999999542 1223368899998764 22222 2
Q ss_pred EEEEcc-----CCCeE----EeCcccCCccccccCHhHHhh--hhHHHHHhcCccccccccccccccccCCceEEcccH
Q 020346 227 SLLPLS-----GGGYL----ADTPGFNQPSLLKVTKQSLAQ--TFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDW 294 (327)
Q Consensus 227 ~~v~q~-----~~~~i----~Dtpg~~~~~l~~~~~~~l~~--~~~~~~~~LSgGq~q~~~~~~~~h~~ep~~~v~~~~ 294 (327)
.++|-. .+.++ .+++|-.....+-++...+.+ .+-.-.+.||.||+.|.++|.|+ ...|++.+.|+.
T Consensus 457 a~iPge~Ep~f~~~tilehl~s~tGD~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkll-aerpn~~~iDEF 534 (593)
T COG2401 457 ALIPGEYEPEFGEVTILEHLRSKTGDLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLL-AERPNVLLIDEF 534 (593)
T ss_pred hccCcccccccCchhHHHHHhhccCchhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHH-hcCCCcEEhhhh
Confidence 223322 11111 122222111111111111111 11111223999999999999999 889999998743
|
|
| >CHL00010 infA translation initiation factor 1 | Back alignment and domain information |
|---|
Probab=98.71 E-value=3.2e-08 Score=75.81 Aligned_cols=59 Identities=24% Similarity=0.287 Sum_probs=47.0
Q ss_pred CeeEEEecCC-CCceeccCCCCcEEEEEEcccccccCCCcccCcEEEEceecccCCceEEe
Q 020346 1 MRVIVQQSEP-SRTSDCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIE 60 (327)
Q Consensus 1 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vGD~V~~~~~~~~~~~~~i~ 60 (327)
|+|+|++..+ |+|+|.. ++|..+.|.++|+||+.+..|+|||+|.+++...+...|.|.
T Consensus 9 ~~G~Vik~lg~~~y~V~~-~~g~~~~c~~rGklr~~~i~~~vGD~V~ve~~~~~~~~g~Ii 68 (78)
T CHL00010 9 MEGLVTESLPNGMFRVRL-DNGCQVLGYISGKIRRNSIRILPGDRVKVELSPYDLTKGRII 68 (78)
T ss_pred EEEEEEEEcCCCEEEEEe-CCCCEEEEEeccceecCCcccCCCCEEEEEEcccCCCeEEEE
Confidence 6899999995 7778754 478899999999999777889999999999543334456554
|
|
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.69 E-value=6e-09 Score=103.60 Aligned_cols=47 Identities=26% Similarity=0.348 Sum_probs=41.9
Q ss_pred cCCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcC
Q 020346 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 135 ~~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g 181 (327)
+-...+..+|+.+..|.+-++++ .|..++++|+||+||||||++|+.
T Consensus 81 i~~~~fdLa~G~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~ 128 (582)
T KOG0062|consen 81 IHIDNFDLAYGGKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN 128 (582)
T ss_pred eeeeeeeeeecchhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh
Confidence 34467888999999999888887 899999999999999999999997
|
|
| >cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=98.68 E-value=6.6e-09 Score=93.09 Aligned_cols=43 Identities=14% Similarity=0.079 Sum_probs=31.3
Q ss_pred HhcCcccccccccccccc---ccCCceEEcccHH------HHHHHHHHHHHH
Q 020346 265 EMLKANEPAKCSFNNCLH---LGEPGCVVKGDWE------RYQYYFQLLDEI 307 (327)
Q Consensus 265 ~~LSgGq~q~~~~~~~~h---~~ep~~~v~~~~~------r~~~~~~ll~e~ 307 (327)
..||+||+|++.++.++- +.+|.++|+|+|. ....+.+++.++
T Consensus 108 ~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~~~~~~~l~~~ 159 (198)
T cd03276 108 KTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNRKISTDLLVKE 159 (198)
T ss_pred cccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHHHHHHHHHHHHH
Confidence 349999999999998662 4899999999663 334444455554
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >TIGR02858 spore_III_AA stage III sporulation protein AA | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.6e-08 Score=94.88 Aligned_cols=106 Identities=20% Similarity=0.268 Sum_probs=69.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcceeeEEEEEEEccCCCeEEe
Q 020346 160 QTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLAD 239 (327)
Q Consensus 160 ~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~tt~~i~~v~q~~~~~i~D 239 (327)
..++|+|+||+|||||+++|+| ++.|++|+|+++|+++..+.... .....++++||.
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~------------~~~~~~G~i~~~g~~v~~~d~~~----ei~~~~~~~~q~------- 168 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLAR------------ILSTGISQLGLRGKKVGIVDERS----EIAGCVNGVPQH------- 168 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhC------------ccCCCCceEEECCEEeecchhHH----HHHHHhcccccc-------
Confidence 6899999999999999999999 88999999999999987543111 133445677774
Q ss_pred CcccCCccccccCHhHHhhhhHHHHHhcCccccccccccccccccCCceEEcccHHHHHHHHHHHHHHH
Q 020346 240 TPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWERYQYYFQLLDEIR 308 (327)
Q Consensus 240 tpg~~~~~l~~~~~~~l~~~~~~~~~~LSgGq~q~~~~~~~~h~~ep~~~v~~~~~r~~~~~~ll~e~~ 308 (327)
..+.+...+++..... . + ..++-..+|++++.|++.+.+.+.++++.+.
T Consensus 169 ~~~~r~~v~~~~~k~~---~---~--------------~~~i~~~~P~villDE~~~~e~~~~l~~~~~ 217 (270)
T TIGR02858 169 DVGIRTDVLDGCPKAE---G---M--------------MMLIRSMSPDVIVVDEIGREEDVEALLEALH 217 (270)
T ss_pred cccccccccccchHHH---H---H--------------HHHHHhCCCCEEEEeCCCcHHHHHHHHHHHh
Confidence 2332222222211110 0 1 1111124899999998877777777776653
|
Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation. |
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.65 E-value=2.2e-08 Score=99.34 Aligned_cols=147 Identities=16% Similarity=0.212 Sum_probs=99.9
Q ss_pred hhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceee-ccccccCCCcceeeEE
Q 020346 148 LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRV-GEVSTKSGRGKHTTRH 225 (327)
Q Consensus 148 ~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v-~~~s~~~~~g~~tt~~ 225 (327)
..++++||.+ .|++++|.|-+|-|-|-|+.+|+| +.+|.+|+|+++|.++ +..+.... +...
T Consensus 272 ~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisG------------lr~~~~G~I~l~G~~v~~~~~~~~~----r~~G 335 (501)
T COG3845 272 TAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISG------------LRKPASGRILLNGKDVLGRLSPRER----RRLG 335 (501)
T ss_pred ceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhC------------CCccCCceEEECCEeccccCCHHHH----HhcC
Confidence 4588999998 899999999999999999999999 8888899999999997 43343322 5567
Q ss_pred EEEEEccC-------CCeEEeCcccCCcc-----cc-ccCHhHHhhhhHHH--------------HHhcCcccccccccc
Q 020346 226 VSLLPLSG-------GGYLADTPGFNQPS-----LL-KVTKQSLAQTFPEI--------------KEMLKANEPAKCSFN 278 (327)
Q Consensus 226 i~~v~q~~-------~~~i~Dtpg~~~~~-----l~-~~~~~~l~~~~~~~--------------~~~LSgGq~q~~~~~ 278 (327)
++++|.+. ++.+.++..+.... .. .+....+.....++ ...||||.+||+-++
T Consensus 336 ~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~a~~LSGGNqQK~Ila 415 (501)
T COG3845 336 LAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPARSLSGGNQQKLILA 415 (501)
T ss_pred CccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCcchhhcCCcceehhhhh
Confidence 88898874 12233332221110 00 11222222221222 234999999999999
Q ss_pred ccccccCCceEEcccH------HHHHHHHHHHHHHHHhH
Q 020346 279 NCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRIRE 311 (327)
Q Consensus 279 ~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~~~ 311 (327)
+-+ ..+|+++|..+| .-.+..++.+-+.++.+
T Consensus 416 REl-~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G 453 (501)
T COG3845 416 REL-ARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAG 453 (501)
T ss_pred hhh-ccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcC
Confidence 999 789999997654 35555666666655544
|
|
| >COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.64 E-value=7.1e-09 Score=93.16 Aligned_cols=155 Identities=19% Similarity=0.263 Sum_probs=109.4
Q ss_pred cchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcceee
Q 020346 145 ESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTT 223 (327)
Q Consensus 145 ~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~tt 223 (327)
+--.+++.+++++ .|++-++||.||+|||-+.++|+|-... -+..|.....|++.+.-.++... +.+-..
T Consensus 18 G~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kd--------nW~vTADR~Rf~~idLL~L~Pr~-RRk~ig 88 (330)
T COG4170 18 GWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKD--------NWRVTADRMRFDDIDLLRLSPRE-RRKLVG 88 (330)
T ss_pred CceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhccccc--------ceEEEhhhcccccchhhcCChHH-hhhhhc
Confidence 3445789999998 8999999999999999999999994321 56788889999999988887653 345566
Q ss_pred EEEEEEEccCCCeE----------EeC-ccc--CCc--------------cccccC---HhHHhhhhHHHHHhcCccccc
Q 020346 224 RHVSLLPLSGGGYL----------ADT-PGF--NQP--------------SLLKVT---KQSLAQTFPEIKEMLKANEPA 273 (327)
Q Consensus 224 ~~i~~v~q~~~~~i----------~Dt-pg~--~~~--------------~l~~~~---~~~l~~~~~~~~~~LSgGq~q 273 (327)
+.++|++|++...+ +.+ |+- ... .+..+. ..++...+|.- |-.||-|
T Consensus 89 ~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SYP~E---lTeGE~Q 165 (330)
T COG4170 89 HNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYPYE---LTEGECQ 165 (330)
T ss_pred cchhhhhcCchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHHhCcch---hccCcce
Confidence 78899999874322 222 211 100 011222 23445555555 8899999
Q ss_pred cccccccccccCCceEEcccH------HHHHHHHHHHHHHHHhHH
Q 020346 274 KCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRIREE 312 (327)
Q Consensus 274 ~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~~~~ 312 (327)
++.++.++ .+.|.+++.|+| ......++++..++...+
T Consensus 166 KVMIA~A~-AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~ 209 (330)
T COG4170 166 KVMIAIAL-ANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSN 209 (330)
T ss_pred eeeeehhh-ccCCceEeccCCCcccCccHHHHHHHHHHHhhccCC
Confidence 99999988 999999998855 245555667776665544
|
|
| >cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=98.63 E-value=5.9e-08 Score=89.66 Aligned_cols=44 Identities=9% Similarity=0.039 Sum_probs=31.7
Q ss_pred HhcCccccccccccccccc---cCCceEEcccH------HHHHHHHHHHHHHH
Q 020346 265 EMLKANEPAKCSFNNCLHL---GEPGCVVKGDW------ERYQYYFQLLDEIR 308 (327)
Q Consensus 265 ~~LSgGq~q~~~~~~~~h~---~ep~~~v~~~~------~r~~~~~~ll~e~~ 308 (327)
..||+||+|++.++.++-. .+|+++++|+| .....+.+++.++.
T Consensus 154 ~~LS~G~k~rl~la~al~~~~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~ 206 (247)
T cd03275 154 DNLSGGEKTMAALALLFAIHSYQPAPFFVLDEVDAALDNTNVGKVASYIREQA 206 (247)
T ss_pred HHcCHHHHHHHHHHHHHHHhccCCCCEEEEecccccCCHHHHHHHHHHHHHhc
Confidence 4599999999999987722 35899999865 34444555666654
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >TIGR03238 dnd_assoc_3 dnd system-associated protein 3 | Back alignment and domain information |
|---|
Probab=98.63 E-value=2.3e-08 Score=99.76 Aligned_cols=53 Identities=17% Similarity=0.149 Sum_probs=45.7
Q ss_pred hhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCccccccccccccc-ceeecceeeccccc
Q 020346 148 LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILG-SKWFEDQRVGEVST 214 (327)
Q Consensus 148 ~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G-~i~~~g~~v~~~s~ 214 (327)
.+|+++++.+ +|++++|+|||||||||||+ .+ +..|++| +|.++|.++...+.
T Consensus 20 ~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~------------l~~~~sGg~I~ldg~~~~~~~~ 74 (504)
T TIGR03238 20 RILVKFNKELPSSSLLFLCGSSGDGKSEILA--EN------------KRKFSEGYEFFLDATHSFSPNK 74 (504)
T ss_pred HHHhCCceeecCCCEEEEECCCCCCHHHHHh--cC------------CCCCCCCCEEEECCEECCCCCH
Confidence 5788888887 89999999999999999999 55 6678888 79999999877543
|
cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A. |
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.4e-08 Score=101.48 Aligned_cols=49 Identities=24% Similarity=0.348 Sum_probs=43.9
Q ss_pred cCCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCC
Q 020346 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSP 183 (327)
Q Consensus 135 ~~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~ 183 (327)
+-++.++++|.....+++..+.+ +|+.++|+|+||+||||+|++|.+..
T Consensus 76 vk~~sls~s~~g~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e 125 (614)
T KOG0927|consen 76 VKIESLSLSFHGVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGRE 125 (614)
T ss_pred ceeeeeeeccCCceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCC
Confidence 34577888999999999999997 99999999999999999999999943
|
|
| >PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse | Back alignment and domain information |
|---|
Probab=98.57 E-value=7.9e-08 Score=77.94 Aligned_cols=22 Identities=50% Similarity=0.741 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHcCC
Q 020346 161 TTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g~ 182 (327)
.++|+|++|||||||+|.|.+.
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~ 22 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGK 22 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEECCCCCCHHHHHHHHhcc
Confidence 4799999999999999999983
|
These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A .... |
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.54 E-value=2.2e-08 Score=99.60 Aligned_cols=128 Identities=18% Similarity=0.172 Sum_probs=75.4
Q ss_pred hHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcceeeEEEE
Q 020346 149 GLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVS 227 (327)
Q Consensus 149 ~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~tt~~i~ 227 (327)
.+.++++.. ....++++|+||+||||+++++.+ -..|+.|.+. +|.+..++
T Consensus 379 ~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~------------~l~~~rgi~~----------------~~~r~ri~ 430 (582)
T KOG0062|consen 379 WRKQLGLDRESDSRISRVGENGDGKSTLLKILKG------------DLTPTRGIVG----------------RHPRLRIK 430 (582)
T ss_pred hhhccCCccchhhhhheeccCchhHHHHHHHHhc------------cCCcccceee----------------ecccceec
Confidence 444444444 356899999999999999999999 3456555433 33566677
Q ss_pred EEEccCC------CeEEe-----CcccCCcc----ccccCHhHHhhhhHHHHHhcCccccccccccccccccCCceEEcc
Q 020346 228 LLPLSGG------GYLAD-----TPGFNQPS----LLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG 292 (327)
Q Consensus 228 ~v~q~~~------~~i~D-----tpg~~~~~----l~~~~~~~l~~~~~~~~~~LSgGq~q~~~~~~~~h~~ep~~~v~~ 292 (327)
+..|-.- ...+| -||..... +..+....-....+ ...|||||+-|++||.|. ...|.++|+|
T Consensus 431 ~f~Qhhvd~l~~~v~~vd~~~~~~pG~~~ee~r~hl~~~Gl~g~la~~s--i~~LSGGQKsrvafA~~~-~~~PhlLVLD 507 (582)
T KOG0062|consen 431 YFAQHHVDFLDKNVNAVDFMEKSFPGKTEEEIRRHLGSFGLSGELALQS--IASLSGGQKSRVAFAACT-WNNPHLLVLD 507 (582)
T ss_pred chhHhhhhHHHHHhHHHHHHHHhCCCCCHHHHHHHHHhcCCCchhhhcc--ccccCCcchhHHHHHHHh-cCCCcEEEec
Confidence 7766320 00001 12221100 01111110011111 234999999999999999 8999999999
Q ss_pred cHH---HHHHHHHHHHHH
Q 020346 293 DWE---RYQYYFQLLDEI 307 (327)
Q Consensus 293 ~~~---r~~~~~~ll~e~ 307 (327)
+|. -.+..-+|.+-+
T Consensus 508 EPTNhLD~dsl~AL~~Al 525 (582)
T KOG0062|consen 508 EPTNHLDRDSLGALAKAL 525 (582)
T ss_pred CCCccccHHHHHHHHHHH
Confidence 885 334444444444
|
|
| >COG1159 Era GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.54 E-value=1e-07 Score=89.56 Aligned_cols=58 Identities=38% Similarity=0.602 Sum_probs=41.3
Q ss_pred CEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcceeeEE-E-EEEEcc-CCCe
Q 020346 160 QTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRH-V-SLLPLS-GGGY 236 (327)
Q Consensus 160 ~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~tt~~-i-~~v~q~-~~~~ 236 (327)
-.+||||+|+||||||+|.|+| +++.-+|.++. ||++ + +.+..+ .+..
T Consensus 7 GfVaIiGrPNvGKSTLlN~l~G-------------------------~KisIvS~k~Q----TTR~~I~GI~t~~~~QiI 57 (298)
T COG1159 7 GFVAIIGRPNVGKSTLLNALVG-------------------------QKISIVSPKPQ----TTRNRIRGIVTTDNAQII 57 (298)
T ss_pred EEEEEEcCCCCcHHHHHHHHhc-------------------------CceEeecCCcc----hhhhheeEEEEcCCceEE
Confidence 4699999999999999999999 44445555543 4544 2 333333 2456
Q ss_pred EEeCcccCCc
Q 020346 237 LADTPGFNQP 246 (327)
Q Consensus 237 i~Dtpg~~~~ 246 (327)
++||||+..+
T Consensus 58 fvDTPGih~p 67 (298)
T COG1159 58 FVDTPGIHKP 67 (298)
T ss_pred EEeCCCCCCc
Confidence 7899999876
|
|
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.52 E-value=2.1e-08 Score=98.71 Aligned_cols=121 Identities=18% Similarity=0.238 Sum_probs=67.0
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCccccccccccccccee-----------ecceeecccccc--CCCcceeeE
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKW-----------FEDQRVGEVSTK--SGRGKHTTR 224 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~-----------~~g~~v~~~s~~--~~~g~~tt~ 224 (327)
+|++++|+|+||.||||.++.|+| ...|.-|.-- |.|.++...-.+ .+.- ....
T Consensus 99 ~G~V~GilG~NGiGKsTalkILaG------------el~PNLG~~~~pp~wdeVi~~FrGtELq~YF~~l~~g~~-r~v~ 165 (591)
T COG1245 99 PGKVVGILGPNGIGKSTALKILAG------------ELKPNLGRYEDPPSWDEVIKRFRGTELQNYFKKLYEGEL-RAVH 165 (591)
T ss_pred CCcEEEEEcCCCccHHHHHHHHhC------------ccccCCCCCCCCCCHHHHHHHhhhhHHHHHHHHHHcCCc-ceec
Confidence 799999999999999999999999 5566655411 111111111000 0000 0111
Q ss_pred EEEEEEccC---CCe------EEeCcccCCccccccCHhHHhhhhHHHHHhcCccccccccccccccccCCceEEcccHH
Q 020346 225 HVSLLPLSG---GGY------LADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE 295 (327)
Q Consensus 225 ~i~~v~q~~---~~~------i~Dtpg~~~~~l~~~~~~~l~~~~~~~~~~LSgGq~q~~~~~~~~h~~ep~~~v~~~~~ 295 (327)
+.+|+-.-+ .+. -.|.-|......+.+.+..+.+ .-...|||||.||++++-|+ +.+.++.+.|++.
T Consensus 166 K~QYVd~iPk~~KG~v~elLk~~de~g~~devve~l~L~nvl~---r~v~~LSGGELQr~aIaa~l-~rdADvY~FDEps 241 (591)
T COG1245 166 KPQYVDLIPKVVKGKVGELLKKVDERGKFDEVVERLGLENVLD---RDVSELSGGELQRVAIAAAL-LRDADVYFFDEPS 241 (591)
T ss_pred chHHHHHHHHHhcchHHHHHHhhhhcCcHHHHHHHhcchhhhh---hhhhhcCchHHHHHHHHHHH-hccCCEEEEcCCc
Confidence 222221111 111 1122232222233333333333 23344999999999999888 9999999988763
|
|
| >KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription] | Back alignment and domain information |
|---|
Probab=98.48 E-value=2.4e-07 Score=83.16 Aligned_cols=59 Identities=19% Similarity=0.201 Sum_probs=44.5
Q ss_pred ceeeccCc-chhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeeccee
Q 020346 138 EPLFCSVE-SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQR 208 (327)
Q Consensus 138 ~~~~~s~~-~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~ 208 (327)
..+.++|. ..+.+-++++.+ .|....+||.||+|||||+++|.|++ +..+ |.|.+.|.+
T Consensus 17 sgl~f~y~~~dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKh----------mv~~--~~v~Vlgrs 77 (291)
T KOG2355|consen 17 SGLQFKYKVSDPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKH----------MVGG--GVVQVLGRS 77 (291)
T ss_pred eccEEecccCCceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcc----------cccC--CeEEEcCcC
Confidence 34555554 335667777777 78999999999999999999999976 3334 777777654
|
|
| >PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions | Back alignment and domain information |
|---|
Probab=98.38 E-value=6.7e-07 Score=77.36 Aligned_cols=57 Identities=32% Similarity=0.494 Sum_probs=34.6
Q ss_pred EEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcceeeEEEEEEEccC-CCeEEe
Q 020346 161 TTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSG-GGYLAD 239 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~tt~~i~~v~q~~-~~~i~D 239 (327)
.++|+|.||||||||+|+|.|.. ..++..+..+ .....+.+...+ ...++|
T Consensus 2 ~ialvG~PNvGKStLfN~Ltg~~-----------------------~~v~n~pG~T-----v~~~~g~~~~~~~~~~lvD 53 (156)
T PF02421_consen 2 RIALVGNPNVGKSTLFNALTGAK-----------------------QKVGNWPGTT-----VEKKEGIFKLGDQQVELVD 53 (156)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS-----------------------EEEEESTTSS-----SEEEEEEEEETTEEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHCCC-----------------------ceecCCCCCC-----eeeeeEEEEecCceEEEEE
Confidence 58999999999999999999943 3344433221 233344444332 457899
Q ss_pred CcccCC
Q 020346 240 TPGFNQ 245 (327)
Q Consensus 240 tpg~~~ 245 (327)
+||+-.
T Consensus 54 lPG~ys 59 (156)
T PF02421_consen 54 LPGIYS 59 (156)
T ss_dssp ----SS
T ss_pred CCCccc
Confidence 999754
|
FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B .... |
| >cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes | Back alignment and domain information |
|---|
Probab=98.35 E-value=3.4e-07 Score=81.92 Aligned_cols=30 Identities=30% Similarity=0.443 Sum_probs=24.7
Q ss_pred HHHHhhc-CC-CEEEEEcCCCCCHHHHHHHHc
Q 020346 151 DSLLQRL-RD-QTTVIVGPSGVGKSSLINALR 180 (327)
Q Consensus 151 ~~l~~~l-~g-~~v~lvG~sG~GKSTLln~L~ 180 (327)
-++++.+ +| ++++|+||||+|||||+++|.
T Consensus 18 ~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 18 VPLDIQLGENKRVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred EcceEEECCCceEEEEECCCCCChHHHHHHHH
Confidence 3456666 45 479999999999999999988
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a |
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.34 E-value=1.5e-06 Score=94.97 Aligned_cols=145 Identities=16% Similarity=0.262 Sum_probs=92.8
Q ss_pred hhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcceeeEEE
Q 020346 148 LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHV 226 (327)
Q Consensus 148 ~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~tt~~i 226 (327)
..+++++..+ +|+.+.++|++|+|||||+++|+|.... +..+ .|+|.+||.+..+... .+.+
T Consensus 129 ~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~--------~~~~-~~~isy~G~~~~e~~~--------~~~~ 191 (1391)
T KOG0065|consen 129 QILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDN--------FLKS-SGEITYNGHDLKEFVP--------KKTV 191 (1391)
T ss_pred eeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcc--------cccC-CCceeECCCccccccc--------CceE
Confidence 4677888777 8999999999999999999999996532 3333 3499999998877653 3457
Q ss_pred EEEEccC----CCeEEeCcccCCc------cccccCHhHHh----hhh---------------HHHHHhcCccccccccc
Q 020346 227 SLLPLSG----GGYLADTPGFNQP------SLLKVTKQSLA----QTF---------------PEIKEMLKANEPAKCSF 277 (327)
Q Consensus 227 ~~v~q~~----~~~i~Dtpg~~~~------~l~~~~~~~l~----~~~---------------~~~~~~LSgGq~q~~~~ 277 (327)
+|.+|.+ .+++.+|.-|... ..+.++..+.. +.. .++.+-+||||++|+.+
T Consensus 192 aY~~e~DvH~p~lTVreTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi 271 (1391)
T KOG0065|consen 192 AYNSEQDVHFPELTVRETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSI 271 (1391)
T ss_pred EeccccccccceeEEeehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeee
Confidence 7887764 3455555433211 01112221111 111 11123379999999999
Q ss_pred cccccccCCceEEcccHH---HHHHHHHHHHHHHHh
Q 020346 278 NNCLHLGEPGCVVKGDWE---RYQYYFQLLDEIRIR 310 (327)
Q Consensus 278 ~~~~h~~ep~~~v~~~~~---r~~~~~~ll~e~~~~ 310 (327)
+..+ +..+.....|+.. --....++++-++..
T Consensus 272 ~E~~-v~~~~~~~~De~t~GLDSsTal~iik~lr~~ 306 (1391)
T KOG0065|consen 272 GEML-VGPASILFWDEITRGLDSSTAFQIIKALRQL 306 (1391)
T ss_pred eeee-ecCcceeeeecccccccHHHHHHHHHHHHHH
Confidence 9888 8899999988653 223333444444433
|
|
| >cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases | Back alignment and domain information |
|---|
Probab=98.33 E-value=1.2e-06 Score=77.49 Aligned_cols=48 Identities=29% Similarity=0.380 Sum_probs=40.2
Q ss_pred hhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecce
Q 020346 148 LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQ 207 (327)
Q Consensus 148 ~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~ 207 (327)
...+-+.+.+ .|+.++|+|+||||||||+++|++ +++|+.|.|.+++.
T Consensus 13 ~~~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~------------~i~~~~~~i~ied~ 61 (186)
T cd01130 13 LQAAYLWLAVEARKNILISGGTGSGKTTLLNALLA------------FIPPDERIITIEDT 61 (186)
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHh------------hcCCCCCEEEECCc
Confidence 3444555555 799999999999999999999999 88899999998764
|
The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase. |
| >KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.31 E-value=4.1e-07 Score=89.12 Aligned_cols=101 Identities=21% Similarity=0.315 Sum_probs=63.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcceeeEEEEEEEccC----CC
Q 020346 160 QTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSG----GG 235 (327)
Q Consensus 160 ~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~tt~~i~~v~q~~----~~ 235 (327)
+++..+|.||.|||||+++|+| ..+|++|. ..+. -.++|=||.. .+
T Consensus 368 eiivmlgEngtgkTTfi~mlag------------~~~pd~~~----e~p~--------------lnVSykpqkispK~~~ 417 (592)
T KOG0063|consen 368 EIIVMLGENGTGKTTFIRMLAG------------RLKPDEGG----EIPV--------------LNVSYKPQKISPKREG 417 (592)
T ss_pred eeEEEEccCCcchhHHHHHHhc------------CCCCCccC----cccc--------------cceeccccccCccccc
Confidence 6899999999999999999999 66787763 1111 1233333321 00
Q ss_pred --------eEEe---CcccCCccccccCHhHHhhhhHHHHHhcCccccccccccccccccCCceEEcccH
Q 020346 236 --------YLAD---TPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDW 294 (327)
Q Consensus 236 --------~i~D---tpg~~~~~l~~~~~~~l~~~~~~~~~~LSgGq~q~~~~~~~~h~~ep~~~v~~~~ 294 (327)
.+.| .|-|.... +..-.+.+........|||||.||++++-|+ -...++.+.|+|
T Consensus 418 tvR~ll~~kIr~ay~~pqF~~dv---mkpL~ie~i~dqevq~lSggelQRval~KOG-GKpAdvYliDEp 483 (592)
T KOG0063|consen 418 TVRQLLHTKIRDAYMHPQFVNDV---MKPLQIENIIDQEVQGLSGGELQRVALALCL-GKPADVYLIDEP 483 (592)
T ss_pred hHHHHHHHHhHhhhcCHHHHHhh---hhhhhHHHHHhHHhhcCCchhhHHHHHHHhc-CCCCceEEecCc
Confidence 0111 11121111 1222334444445566999999999999998 777888887765
|
|
| >cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts) | Back alignment and domain information |
|---|
Probab=98.31 E-value=1.2e-06 Score=81.50 Aligned_cols=25 Identities=40% Similarity=0.585 Sum_probs=22.7
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcCC
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g~ 182 (327)
..-+++|+|++|||||||+|+|.|.
T Consensus 30 ~~~~IllvG~tGvGKSSliNaLlg~ 54 (249)
T cd01853 30 FSLTILVLGKTGVGKSSTINSIFGE 54 (249)
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCC
Confidence 4568999999999999999999994
|
This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon. |
| >cd04104 p47_IIGP_like p47 (47-kDa) family | Back alignment and domain information |
|---|
Probab=98.29 E-value=1.1e-06 Score=78.28 Aligned_cols=61 Identities=33% Similarity=0.290 Sum_probs=40.6
Q ss_pred EEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcceeeEEEEEEEc--cCCCeEE
Q 020346 161 TTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPL--SGGGYLA 238 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~tt~~i~~v~q--~~~~~i~ 238 (327)
.++|+|+||||||||+|+|+| ...|++|.+..+... ++.....+.. ..+..++
T Consensus 3 kI~i~G~~g~GKSSLin~L~g------------~~~~~~~~~~~~~~~-------------~t~~~~~~~~~~~~~l~l~ 57 (197)
T cd04104 3 NIAVTGESGAGKSSFINALRG------------VGHEEEGAAPTGVVE-------------TTMKRTPYPHPKFPNVTLW 57 (197)
T ss_pred EEEEECCCCCCHHHHHHHHhc------------cCCCCCCccccCccc-------------cccCceeeecCCCCCceEE
Confidence 589999999999999999999 445666665443111 2222222322 2357899
Q ss_pred eCcccCCc
Q 020346 239 DTPGFNQP 246 (327)
Q Consensus 239 Dtpg~~~~ 246 (327)
||||+...
T Consensus 58 DtpG~~~~ 65 (197)
T cd04104 58 DLPGIGST 65 (197)
T ss_pred eCCCCCcc
Confidence 99998753
|
The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei |
| >TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB | Back alignment and domain information |
|---|
Probab=98.27 E-value=3.4e-06 Score=73.65 Aligned_cols=60 Identities=33% Similarity=0.538 Sum_probs=40.6
Q ss_pred CCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcceeeEEEEEEEccCCCeEE
Q 020346 159 DQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLA 238 (327)
Q Consensus 159 g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~tt~~i~~v~q~~~~~i~ 238 (327)
.-.++|+|++|+|||||+|.|.+.. .+...+...+ +|..+.++..+.+..++
T Consensus 18 ~~~i~ivG~~~~GKStlin~l~~~~------------------------~~~~~~~~~~----~t~~~~~~~~~~~~~li 69 (179)
T TIGR03598 18 GPEIAFAGRSNVGKSSLINALTNRK------------------------KLARTSKTPG----RTQLINFFEVNDGFRLV 69 (179)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCC------------------------CcccccCCCC----cceEEEEEEeCCcEEEE
Confidence 4579999999999999999999832 0112222222 45555555544567889
Q ss_pred eCcccCCc
Q 020346 239 DTPGFNQP 246 (327)
Q Consensus 239 Dtpg~~~~ 246 (327)
||||+...
T Consensus 70 DtpG~~~~ 77 (179)
T TIGR03598 70 DLPGYGYA 77 (179)
T ss_pred eCCCCccc
Confidence 99997643
|
Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes. |
| >PRK00454 engB GTP-binding protein YsxC; Reviewed | Back alignment and domain information |
|---|
Probab=98.27 E-value=1.5e-06 Score=76.20 Aligned_cols=59 Identities=32% Similarity=0.472 Sum_probs=39.9
Q ss_pred CCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcceeeEEEEEEEccCCCeEE
Q 020346 159 DQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLA 238 (327)
Q Consensus 159 g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~tt~~i~~v~q~~~~~i~ 238 (327)
.-.++|+|.+|||||||+|.|.+.. + +...+...+ +|+.+.++.......++
T Consensus 24 ~~~v~ivG~~~~GKSsli~~l~~~~----------~--------------~~~~~~~~~----~t~~~~~~~~~~~l~l~ 75 (196)
T PRK00454 24 GPEIAFAGRSNVGKSSLINALTNRK----------N--------------LARTSKTPG----RTQLINFFEVNDKLRLV 75 (196)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCC----------C--------------cccccCCCC----ceeEEEEEecCCeEEEe
Confidence 3569999999999999999999832 1 112222222 45555555544567889
Q ss_pred eCcccCC
Q 020346 239 DTPGFNQ 245 (327)
Q Consensus 239 Dtpg~~~ 245 (327)
||||+..
T Consensus 76 DtpG~~~ 82 (196)
T PRK00454 76 DLPGYGY 82 (196)
T ss_pred CCCCCCC
Confidence 9999754
|
|
| >TIGR00436 era GTP-binding protein Era | Back alignment and domain information |
|---|
Probab=98.26 E-value=1.1e-06 Score=82.14 Aligned_cols=22 Identities=41% Similarity=0.647 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHcCC
Q 020346 161 TTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g~ 182 (327)
.++|+|++|||||||+|+|.|.
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~ 23 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQ 23 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999993
|
Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein. |
| >COG0486 ThdF Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.25 E-value=2e-06 Score=85.22 Aligned_cols=77 Identities=32% Similarity=0.396 Sum_probs=51.3
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcceeeEEEEEEEccCC---
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGG--- 234 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~tt~~i~~v~q~~~--- 234 (327)
.|-.++|+|+||||||||+|+|+++..+ -|+.+ +| ||+.+--....-+
T Consensus 216 ~G~kvvIiG~PNvGKSSLLNaL~~~d~A----------------------IVTdI---~G----TTRDviee~i~i~G~p 266 (454)
T COG0486 216 EGLKVVIIGRPNVGKSSLLNALLGRDRA----------------------IVTDI---AG----TTRDVIEEDINLNGIP 266 (454)
T ss_pred cCceEEEECCCCCcHHHHHHHHhcCCce----------------------EecCC---CC----CccceEEEEEEECCEE
Confidence 5789999999999999999999995532 13333 34 8888754444333
Q ss_pred CeEEeCcccCCccccccCHhHHhhhhHHHH
Q 020346 235 GYLADTPGFNQPSLLKVTKQSLAQTFPEIK 264 (327)
Q Consensus 235 ~~i~Dtpg~~~~~l~~~~~~~l~~~~~~~~ 264 (327)
..++||.|++... +.++...+......+.
T Consensus 267 v~l~DTAGiRet~-d~VE~iGIeRs~~~i~ 295 (454)
T COG0486 267 VRLVDTAGIRETD-DVVERIGIERAKKAIE 295 (454)
T ss_pred EEEEecCCcccCc-cHHHHHHHHHHHHHHH
Confidence 3688999999653 2334444444444443
|
|
| >cd01852 AIG1 AIG1 (avrRpt2-induced gene 1) | Back alignment and domain information |
|---|
Probab=98.25 E-value=1.7e-06 Score=76.83 Aligned_cols=23 Identities=35% Similarity=0.498 Sum_probs=21.2
Q ss_pred EEEEEcCCCCCHHHHHHHHcCCC
Q 020346 161 TTVIVGPSGVGKSSLINALRSSP 183 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g~~ 183 (327)
+++|+|.||||||||+|.|+|..
T Consensus 2 ~i~lvG~~g~GKSsl~N~ilg~~ 24 (196)
T cd01852 2 RLVLVGKTGAGKSATGNTILGRE 24 (196)
T ss_pred EEEEECCCCCCHHHHHHHhhCCC
Confidence 58999999999999999999943
|
This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins). |
| >cd01876 YihA_EngB The YihA (EngB) subfamily | Back alignment and domain information |
|---|
Probab=98.23 E-value=1.9e-06 Score=72.41 Aligned_cols=57 Identities=32% Similarity=0.444 Sum_probs=37.3
Q ss_pred EEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcceeeEEEEEEEccCCCeEEeCc
Q 020346 162 TVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTP 241 (327)
Q Consensus 162 v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~tt~~i~~v~q~~~~~i~Dtp 241 (327)
++++|++|||||||+|.|.+.. ..++.+|++ + .+.....+..+....++|+|
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~----------~~~~~~~~~--------------~----~t~~~~~~~~~~~~~~~D~~ 53 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRK----------KLARTSKTP--------------G----KTQLINFFNVNDKFRLVDLP 53 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCC----------ceeeecCCC--------------C----cceeEEEEEccCeEEEecCC
Confidence 7899999999999999999421 333333321 1 23333344444466788999
Q ss_pred ccCCc
Q 020346 242 GFNQP 246 (327)
Q Consensus 242 g~~~~ 246 (327)
|+...
T Consensus 54 g~~~~ 58 (170)
T cd01876 54 GYGYA 58 (170)
T ss_pred Ccccc
Confidence 97654
|
This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target. |
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=98.23 E-value=9.3e-07 Score=100.21 Aligned_cols=46 Identities=13% Similarity=0.090 Sum_probs=35.6
Q ss_pred hcCcccccccccccccc--ccCCceEEcccH------HHHHHHHHHHHHHHHhH
Q 020346 266 MLKANEPAKCSFNNCLH--LGEPGCVVKGDW------ERYQYYFQLLDEIRIRE 311 (327)
Q Consensus 266 ~LSgGq~q~~~~~~~~h--~~ep~~~v~~~~------~r~~~~~~ll~e~~~~~ 311 (327)
.|||||+||+++++++. ..+|.++|+|+| ...+.+.++++++.+.+
T Consensus 809 tLSGGE~QRV~LAraL~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G 862 (1809)
T PRK00635 809 SLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQG 862 (1809)
T ss_pred cCCHHHHHHHHHHHHHhhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcC
Confidence 39999999999999883 269999999965 45666667777765443
|
|
| >KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.20 E-value=2.3e-06 Score=85.00 Aligned_cols=61 Identities=38% Similarity=0.414 Sum_probs=44.6
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcceeeEEEEEEEccCC---
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGG--- 234 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~tt~~i~~v~q~~~--- 234 (327)
.|-.++|+|+||||||||+|+|.... ..-+++.+| ||+..--.+.+.+
T Consensus 267 ~gl~iaIvGrPNvGKSSLlNaL~~~d-------------------------rsIVSpv~G----TTRDaiea~v~~~G~~ 317 (531)
T KOG1191|consen 267 SGLQIAIVGRPNVGKSSLLNALSRED-------------------------RSIVSPVPG----TTRDAIEAQVTVNGVP 317 (531)
T ss_pred cCCeEEEEcCCCCCHHHHHHHHhcCC-------------------------ceEeCCCCC----cchhhheeEeecCCeE
Confidence 57789999999999999999999944 333444445 7776554444443
Q ss_pred CeEEeCcccCCcc
Q 020346 235 GYLADTPGFNQPS 247 (327)
Q Consensus 235 ~~i~Dtpg~~~~~ 247 (327)
.++.||.|++...
T Consensus 318 v~L~DTAGiRe~~ 330 (531)
T KOG1191|consen 318 VRLSDTAGIREES 330 (531)
T ss_pred EEEEecccccccc
Confidence 3788999999743
|
|
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=98.19 E-value=1.4e-06 Score=94.39 Aligned_cols=45 Identities=11% Similarity=0.138 Sum_probs=35.0
Q ss_pred hcCccccccccccccccccCC---ceEEcccH------HHHHHHHHHHHHHHHhH
Q 020346 266 MLKANEPAKCSFNNCLHLGEP---GCVVKGDW------ERYQYYFQLLDEIRIRE 311 (327)
Q Consensus 266 ~LSgGq~q~~~~~~~~h~~ep---~~~v~~~~------~r~~~~~~ll~e~~~~~ 311 (327)
.|||||+||++++.++ +.+| .+.|+|+| ...+.+.++++++.+.+
T Consensus 830 tLSgGEkQRl~LAraL-~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~G 883 (943)
T PRK00349 830 TLSGGEAQRVKLAKEL-SKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDKG 883 (943)
T ss_pred cCCHHHHHHHHHHHHH-hcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhCC
Confidence 3899999999999988 7788 89999865 45566667777765443
|
|
| >PRK00089 era GTPase Era; Reviewed | Back alignment and domain information |
|---|
Probab=98.16 E-value=3.6e-06 Score=79.36 Aligned_cols=23 Identities=48% Similarity=0.628 Sum_probs=21.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHcCC
Q 020346 160 QTTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 160 ~~v~lvG~sG~GKSTLln~L~g~ 182 (327)
..++|+|++|||||||+|.|.|.
T Consensus 6 g~V~iiG~pn~GKSTLin~L~g~ 28 (292)
T PRK00089 6 GFVAIVGRPNVGKSTLLNALVGQ 28 (292)
T ss_pred EEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999993
|
|
| >PRK15494 era GTPase Era; Provisional | Back alignment and domain information |
|---|
Probab=98.14 E-value=2.4e-06 Score=82.80 Aligned_cols=46 Identities=20% Similarity=0.214 Sum_probs=33.3
Q ss_pred CceeeccCc-chhhHHHHHhhc-CCC-------EEEEEcCCCCCHHHHHHHHcCC
Q 020346 137 YEPLFCSVE-SKLGLDSLLQRL-RDQ-------TTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 137 ~~~~~~s~~-~~~~l~~l~~~l-~g~-------~v~lvG~sG~GKSTLln~L~g~ 182 (327)
+....++|. ....+..+.+.+ .|+ .++|+|.+|||||||+|.|.|.
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~k~~kV~ivG~~nvGKSTLin~l~~~ 75 (339)
T PRK15494 21 ALAAAVREDASTGSTSKLPLEVKFGKMSNQKTVSVCIIGRPNSGKSTLLNRIIGE 75 (339)
T ss_pred cccccccCCCCcccccCCccccccccccccceeEEEEEcCCCCCHHHHHHHHhCC
Confidence 344444443 233556666665 566 8999999999999999999983
|
|
| >cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms | Back alignment and domain information |
|---|
Probab=98.14 E-value=5.2e-06 Score=73.23 Aligned_cols=43 Identities=9% Similarity=0.095 Sum_probs=32.1
Q ss_pred cCcccccccccccccc---ccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 267 LKANEPAKCSFNNCLH---LGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 267 LSgGq~q~~~~~~~~h---~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
||+||+|++.+++++- +..|.+++.|+| ...+.+.+++.++..
T Consensus 95 LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~ 146 (178)
T cd03239 95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAK 146 (178)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh
Confidence 9999999999998762 368999998854 355555566666543
|
SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression. |
| >cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=98.13 E-value=2.3e-06 Score=77.61 Aligned_cols=44 Identities=16% Similarity=0.068 Sum_probs=29.9
Q ss_pred hcCcccccccccccccc---ccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 266 MLKANEPAKCSFNNCLH---LGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 266 ~LSgGq~q~~~~~~~~h---~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
.||+||+|++.++.++. +.+|.+.+.|+| .......+++.++..
T Consensus 126 ~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~~l~~~~~ 178 (213)
T cd03277 126 HQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDMLVETAC 178 (213)
T ss_pred hccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHHHHHHHhh
Confidence 49999999877654321 579999999865 344555555655543
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport | Back alignment and domain information |
|---|
Probab=98.12 E-value=3.8e-06 Score=72.63 Aligned_cols=28 Identities=14% Similarity=0.088 Sum_probs=23.2
Q ss_pred cCccccccccccccccc---cCCceEEcccH
Q 020346 267 LKANEPAKCSFNNCLHL---GEPGCVVKGDW 294 (327)
Q Consensus 267 LSgGq~q~~~~~~~~h~---~ep~~~v~~~~ 294 (327)
||+||++++.+++++.. .+|.+++.||+
T Consensus 78 lS~G~~~~~~la~~L~~~~~~~~~llllDEp 108 (162)
T cd03227 78 LSGGEKELSALALILALASLKPRPLYILDEI 108 (162)
T ss_pred ccccHHHHHHHHHHHHhcCCCCCCEEEEeCC
Confidence 99999999999987732 27899998854
|
These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. |
| >cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes | Back alignment and domain information |
|---|
Probab=98.11 E-value=6.2e-06 Score=68.81 Aligned_cols=24 Identities=54% Similarity=0.696 Sum_probs=22.1
Q ss_pred CCEEEEEcCCCCCHHHHHHHHcCC
Q 020346 159 DQTTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 159 g~~v~lvG~sG~GKSTLln~L~g~ 182 (327)
|..++++|++|+|||||+|.|.+.
T Consensus 1 ~~~i~l~G~~~~GKstli~~l~~~ 24 (157)
T cd04164 1 GIKVVIVGKPNVGKSSLLNALAGR 24 (157)
T ss_pred CcEEEEECCCCCCHHHHHHHHHCC
Confidence 567999999999999999999983
|
It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance. |
| >PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria | Back alignment and domain information |
|---|
Probab=98.02 E-value=6.8e-06 Score=74.28 Aligned_cols=23 Identities=35% Similarity=0.550 Sum_probs=21.1
Q ss_pred EEEEEcCCCCCHHHHHHHHcCCC
Q 020346 161 TTVIVGPSGVGKSSLINALRSSP 183 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g~~ 183 (327)
++.|+|++||||||++|.|+|..
T Consensus 2 ~IlllG~tGsGKSs~~N~ilg~~ 24 (212)
T PF04548_consen 2 RILLLGKTGSGKSSLGNSILGKE 24 (212)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 58999999999999999999954
|
The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C .... |
| >PRK00300 gmk guanylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.02 E-value=4.7e-06 Score=74.26 Aligned_cols=25 Identities=48% Similarity=0.736 Sum_probs=23.5
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcCC
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g~ 182 (327)
+|+.++|+||||||||||+++|.+.
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~ 28 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLER 28 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 6899999999999999999999983
|
|
| >cd04163 Era Era subfamily | Back alignment and domain information |
|---|
Probab=98.00 E-value=1.4e-05 Score=66.85 Aligned_cols=23 Identities=48% Similarity=0.628 Sum_probs=21.2
Q ss_pred CEEEEEcCCCCCHHHHHHHHcCC
Q 020346 160 QTTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 160 ~~v~lvG~sG~GKSTLln~L~g~ 182 (327)
.+++++|++|||||||+|.|+|.
T Consensus 4 ~~i~~~G~~g~GKttl~~~l~~~ 26 (168)
T cd04163 4 GFVAIVGRPNVGKSTLLNALVGQ 26 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999984
|
Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA. |
| >COG1160 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.00 E-value=6.9e-06 Score=81.26 Aligned_cols=59 Identities=32% Similarity=0.392 Sum_probs=39.7
Q ss_pred CEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcceeeEEEEE--EEc-cCCCe
Q 020346 160 QTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSL--LPL-SGGGY 236 (327)
Q Consensus 160 ~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~tt~~i~~--v~q-~~~~~ 236 (327)
.+++|||.||||||||+|.|+|+. ..=++..+| +|+..-| ..+ +....
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r-------------------------~AIV~D~pG----vTRDr~y~~~~~~~~~f~ 54 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRR-------------------------IAIVSDTPG----VTRDRIYGDAEWLGREFI 54 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCe-------------------------eeEeecCCC----CccCCccceeEEcCceEE
Confidence 479999999999999999999943 223333344 5544332 122 22468
Q ss_pred EEeCcccCCcc
Q 020346 237 LADTPGFNQPS 247 (327)
Q Consensus 237 i~Dtpg~~~~~ 247 (327)
++||.|+....
T Consensus 55 lIDTgGl~~~~ 65 (444)
T COG1160 55 LIDTGGLDDGD 65 (444)
T ss_pred EEECCCCCcCC
Confidence 89999987533
|
|
| >TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase) | Back alignment and domain information |
|---|
Probab=97.98 E-value=1.4e-05 Score=76.32 Aligned_cols=25 Identities=36% Similarity=0.597 Sum_probs=22.3
Q ss_pred CCEEEEEcCCCCCHHHHHHHHcCCC
Q 020346 159 DQTTVIVGPSGVGKSSLINALRSSP 183 (327)
Q Consensus 159 g~~v~lvG~sG~GKSTLln~L~g~~ 183 (327)
.-+++|+|.+|+|||||+|.|+|..
T Consensus 38 ~~rIllvGktGVGKSSliNsIlG~~ 62 (313)
T TIGR00991 38 SLTILVMGKGGVGKSSTVNSIIGER 62 (313)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCC
Confidence 3489999999999999999999943
|
|
| >PRK10078 ribose 1,5-bisphosphokinase; Provisional | Back alignment and domain information |
|---|
Probab=97.97 E-value=5.3e-06 Score=73.26 Aligned_cols=23 Identities=48% Similarity=0.780 Sum_probs=22.0
Q ss_pred CCEEEEEcCCCCCHHHHHHHHcC
Q 020346 159 DQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 159 g~~v~lvG~sG~GKSTLln~L~g 181 (327)
|+.++|+||||||||||+++|.+
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~ 24 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQ 24 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 67899999999999999999998
|
|
| >cd01898 Obg Obg subfamily | Back alignment and domain information |
|---|
Probab=97.96 E-value=1.1e-05 Score=68.77 Aligned_cols=21 Identities=33% Similarity=0.559 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHcC
Q 020346 161 TTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g 181 (327)
.++|+|++|||||||+|+|.+
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~ 22 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISN 22 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhc
Confidence 379999999999999999998
|
The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain. |
| >PRK12298 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=97.88 E-value=1.9e-05 Score=77.96 Aligned_cols=21 Identities=29% Similarity=0.499 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHcC
Q 020346 161 TTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g 181 (327)
-++|||.||||||||||.|++
T Consensus 161 dValVG~PNaGKSTLln~Lt~ 181 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVSA 181 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHhC
Confidence 499999999999999999998
|
|
| >cd04155 Arl3 Arl3 subfamily | Back alignment and domain information |
|---|
Probab=97.87 E-value=2.2e-05 Score=67.33 Aligned_cols=25 Identities=24% Similarity=0.531 Sum_probs=22.4
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcCC
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g~ 182 (327)
+.-.++|+|++|||||||++.|.+.
T Consensus 13 ~~~~v~i~G~~g~GKStLl~~l~~~ 37 (173)
T cd04155 13 EEPRILILGLDNAGKTTILKQLASE 37 (173)
T ss_pred CccEEEEEccCCCCHHHHHHHHhcC
Confidence 3467999999999999999999994
|
Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation. |
| >PRK04213 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=97.87 E-value=2.5e-05 Score=69.11 Aligned_cols=23 Identities=43% Similarity=0.641 Sum_probs=21.3
Q ss_pred CCEEEEEcCCCCCHHHHHHHHcC
Q 020346 159 DQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 159 g~~v~lvG~sG~GKSTLln~L~g 181 (327)
.-.++|+|++|||||||+|.|.+
T Consensus 9 ~~~i~i~G~~~~GKSsLin~l~~ 31 (201)
T PRK04213 9 KPEIVFVGRSNVGKSTLVRELTG 31 (201)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 35799999999999999999998
|
|
| >cd04171 SelB SelB subfamily | Back alignment and domain information |
|---|
Probab=97.87 E-value=2.8e-05 Score=65.49 Aligned_cols=21 Identities=33% Similarity=0.398 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHcC
Q 020346 161 TTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g 181 (327)
+++|+|++|||||||+|.|.+
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~ 22 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTG 22 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhC
Confidence 689999999999999999998
|
SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo |
| >PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways | Back alignment and domain information |
|---|
Probab=97.86 E-value=1.8e-05 Score=67.40 Aligned_cols=23 Identities=39% Similarity=0.785 Sum_probs=21.3
Q ss_pred CEEEEEcCCCCCHHHHHHHHcCC
Q 020346 160 QTTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 160 ~~v~lvG~sG~GKSTLln~L~g~ 182 (327)
++++|||++|||||||+++|.|.
T Consensus 2 krimliG~~g~GKTTL~q~L~~~ 24 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGE 24 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCC
Confidence 57899999999999999999993
|
Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process |
| >PRK07721 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=97.85 E-value=1.4e-05 Score=79.95 Aligned_cols=73 Identities=25% Similarity=0.240 Sum_probs=53.2
Q ss_pred hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccc---ccCCCccee
Q 020346 147 KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS---TKSGRGKHT 222 (327)
Q Consensus 147 ~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s---~~~~~g~~t 222 (327)
..+++++ +.+ +|++++|+|+||+|||||+++|++ +++|+.|.|.+.|+.-.++. .........
T Consensus 146 ~~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~------------~~~~~~gvI~~~Gerg~ev~e~~~~~l~~~~l 212 (438)
T PRK07721 146 VRAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIAR------------NTSADLNVIALIGERGREVREFIERDLGPEGL 212 (438)
T ss_pred hhhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhc------------ccCCCeEEEEEEecCCccHHHHHHhhcChhhh
Confidence 4577888 665 999999999999999999999999 88999999999665544332 111111125
Q ss_pred eEEEEEEEcc
Q 020346 223 TRHVSLLPLS 232 (327)
Q Consensus 223 t~~i~~v~q~ 232 (327)
.+.+.++...
T Consensus 213 ~r~v~vv~~~ 222 (438)
T PRK07721 213 KRSIVVVATS 222 (438)
T ss_pred cCeEEEEECC
Confidence 5667777664
|
|
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=97.85 E-value=1.9e-05 Score=85.57 Aligned_cols=31 Identities=39% Similarity=0.470 Sum_probs=27.5
Q ss_pred hhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHH
Q 020346 148 LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINA 178 (327)
Q Consensus 148 ~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~ 178 (327)
..++++++.+ .|+.++|+|+||||||||++-
T Consensus 621 ~~Lk~vsl~Ip~Geiv~VtGvsGSGKSTLl~~ 652 (924)
T TIGR00630 621 NNLKNITVSIPLGLFTCITGVSGSGKSTLIND 652 (924)
T ss_pred CCcCceEEEEeCCCEEEEECCCCCCHHHHHHH
Confidence 4578888887 899999999999999999983
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK06002 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=97.85 E-value=6.1e-06 Score=82.40 Aligned_cols=74 Identities=20% Similarity=0.102 Sum_probs=53.5
Q ss_pred hhhHHHHHhhcCCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecc---eeeccccccCCCcceee
Q 020346 147 KLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFED---QRVGEVSTKSGRGKHTT 223 (327)
Q Consensus 147 ~~~l~~l~~~l~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g---~~v~~~s~~~~~g~~tt 223 (327)
..+++.++-.-+|++++|+|+||+|||||+++|.+ +.+|+.|.|.+.| .++.+..... ......
T Consensus 153 i~aID~L~~I~~Gqri~I~G~SGsGKTTLL~~Ia~------------l~~pd~gvv~liGergrev~e~~~~~-l~~~r~ 219 (450)
T PRK06002 153 VRVIDIFTPLCAGQRIGIFAGSGVGKSTLLAMLAR------------ADAFDTVVIALVGERGREVREFLEDT-LADNLK 219 (450)
T ss_pred cEEeeeeceecCCcEEEEECCCCCCHHHHHHHHhC------------CCCCCeeeeeecccCCccHHHHhHHH-HHHhhC
Confidence 34666665323999999999999999999999999 7789999998864 5554433211 111234
Q ss_pred EEEEEEEccC
Q 020346 224 RHVSLLPLSG 233 (327)
Q Consensus 224 ~~i~~v~q~~ 233 (327)
+.+++++|.+
T Consensus 220 rtI~vV~qsd 229 (450)
T PRK06002 220 KAVAVVATSD 229 (450)
T ss_pred CeEEEEEcCC
Confidence 6789999975
|
|
| >PF13555 AAA_29: P-loop containing region of AAA domain | Back alignment and domain information |
|---|
Probab=97.85 E-value=9.3e-06 Score=59.37 Aligned_cols=24 Identities=46% Similarity=0.908 Sum_probs=21.5
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcC
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g 181 (327)
.|..+.|.|+||+|||||+.++.=
T Consensus 22 ~g~~tli~G~nGsGKSTllDAi~~ 45 (62)
T PF13555_consen 22 RGDVTLITGPNGSGKSTLLDAIQT 45 (62)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 577899999999999999998764
|
|
| >KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.84 E-value=2.1e-05 Score=74.34 Aligned_cols=60 Identities=35% Similarity=0.500 Sum_probs=42.5
Q ss_pred CEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcceeeEEEE--EEEcc-CCCe
Q 020346 160 QTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVS--LLPLS-GGGY 236 (327)
Q Consensus 160 ~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~tt~~i~--~v~q~-~~~~ 236 (327)
-.+|+||+||||||||.|.+.| .++..+|.+. |||++-. .+.-. ....
T Consensus 73 L~vavIG~PNvGKStLtN~mig-------------------------~kv~~vS~K~----~TTr~~ilgi~ts~eTQlv 123 (379)
T KOG1423|consen 73 LYVAVIGAPNVGKSTLTNQMIG-------------------------QKVSAVSRKV----HTTRHRILGIITSGETQLV 123 (379)
T ss_pred EEEEEEcCCCcchhhhhhHhhC-------------------------Cccccccccc----cceeeeeeEEEecCceEEE
Confidence 3689999999999999999999 4555665543 4666533 33221 1456
Q ss_pred EEeCcccCCccc
Q 020346 237 LADTPGFNQPSL 248 (327)
Q Consensus 237 i~Dtpg~~~~~l 248 (327)
++||||+..+..
T Consensus 124 f~DTPGlvs~~~ 135 (379)
T KOG1423|consen 124 FYDTPGLVSKKM 135 (379)
T ss_pred EecCCcccccch
Confidence 789999987653
|
|
| >cd01894 EngA1 EngA1 subfamily | Back alignment and domain information |
|---|
Probab=97.84 E-value=1.5e-05 Score=66.65 Aligned_cols=19 Identities=53% Similarity=0.760 Sum_probs=18.1
Q ss_pred EEEcCCCCCHHHHHHHHcC
Q 020346 163 VIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 163 ~lvG~sG~GKSTLln~L~g 181 (327)
+++|.+|||||||+|.|.+
T Consensus 1 ~l~G~~~~GKssl~~~l~~ 19 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTG 19 (157)
T ss_pred CccCCCCCCHHHHHHHHhC
Confidence 5899999999999999998
|
This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability. |
| >PRK10416 signal recognition particle-docking protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=97.83 E-value=1.1e-05 Score=77.67 Aligned_cols=41 Identities=20% Similarity=0.247 Sum_probs=36.4
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeec
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~ 210 (327)
++++++|+||||+||||++..|++ ++.+..++|.+-+.++.
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~------------~l~~~g~~V~Li~~D~~ 153 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAH------------KYKAQGKKVLLAAGDTF 153 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH------------HHHhcCCeEEEEecCcc
Confidence 578999999999999999999999 77888889998877763
|
|
| >TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains | Back alignment and domain information |
|---|
Probab=97.83 E-value=4.8e-05 Score=78.86 Aligned_cols=23 Identities=39% Similarity=0.640 Sum_probs=21.3
Q ss_pred CEEEEEcCCCCCHHHHHHHHcCC
Q 020346 160 QTTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 160 ~~v~lvG~sG~GKSTLln~L~g~ 182 (327)
-+++|+|++|+|||||+|.|+|.
T Consensus 119 lrIvLVGKTGVGKSSLINSILGe 141 (763)
T TIGR00993 119 LNILVLGKSGVGKSATINSIFGE 141 (763)
T ss_pred eEEEEECCCCCCHHHHHHHHhcc
Confidence 36999999999999999999994
|
The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M. |
| >cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=97.83 E-value=3.8e-06 Score=78.98 Aligned_cols=43 Identities=12% Similarity=0.000 Sum_probs=30.9
Q ss_pred HhcCcccccccccccccc-c--cCCceEEcccH------HHHHHHHHHHHHH
Q 020346 265 EMLKANEPAKCSFNNCLH-L--GEPGCVVKGDW------ERYQYYFQLLDEI 307 (327)
Q Consensus 265 ~~LSgGq~q~~~~~~~~h-~--~ep~~~v~~~~------~r~~~~~~ll~e~ 307 (327)
..||+||+||+.++.+.- . ..|+++++|+| .....+.+++.++
T Consensus 169 ~~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~ 220 (276)
T cd03241 169 KIASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKEL 220 (276)
T ss_pred hhcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHH
Confidence 459999999999997542 2 39999999865 3455555566555
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1 | Back alignment and domain information |
|---|
Probab=97.83 E-value=1.4e-05 Score=68.27 Aligned_cols=19 Identities=53% Similarity=0.824 Sum_probs=17.7
Q ss_pred EEcCCCCCHHHHHHHHcCC
Q 020346 164 IVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 164 lvG~sG~GKSTLln~L~g~ 182 (327)
|+|++|||||||+|+|.+.
T Consensus 1 iiG~~~~GKStll~~l~~~ 19 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNA 19 (176)
T ss_pred CCCCCCCcHHHHHHHHhcC
Confidence 6899999999999999993
|
Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to |
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.82 E-value=6.4e-06 Score=81.17 Aligned_cols=49 Identities=22% Similarity=0.323 Sum_probs=40.6
Q ss_pred cCCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCC
Q 020346 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSP 183 (327)
Q Consensus 135 ~~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~ 183 (327)
+-++.+.+|+..+..+.+-++.+ .|.++++|||||-|||||++.|..+.
T Consensus 265 IKiEnF~ISA~Gk~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~Ra 314 (807)
T KOG0066|consen 265 IKIENFDISAQGKLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARA 314 (807)
T ss_pred ceeeeeeeecccceeeeccceEEEecceecccCCCCCchHHHHHHHHhhh
Confidence 44567777877777777777775 89999999999999999999999854
|
|
| >cd00879 Sar1 Sar1 subfamily | Back alignment and domain information |
|---|
Probab=97.82 E-value=3.7e-05 Score=67.18 Aligned_cols=34 Identities=24% Similarity=0.384 Sum_probs=28.7
Q ss_pred hHHHHHhhcCCCEEEEEcCCCCCHHHHHHHHcCC
Q 020346 149 GLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 149 ~l~~l~~~l~g~~v~lvG~sG~GKSTLln~L~g~ 182 (327)
+++++++..+...++|+|++|||||||+|.|.+.
T Consensus 9 ~~~~~~~~~~~~ki~ilG~~~~GKStLi~~l~~~ 42 (190)
T cd00879 9 VLSSLGLYNKEAKILFLGLDNAGKTTLLHMLKDD 42 (190)
T ss_pred HHHHhhcccCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4677776666667899999999999999999983
|
Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation. |
| >COG1084 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.81 E-value=4.1e-05 Score=73.01 Aligned_cols=62 Identities=29% Similarity=0.326 Sum_probs=43.2
Q ss_pred CCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcceeeEEE--EEEEccC-CC
Q 020346 159 DQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHV--SLLPLSG-GG 235 (327)
Q Consensus 159 g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~tt~~i--~~v~q~~-~~ 235 (327)
.-++.|.|+||||||||+++|.+-. -++...+- ||+.+ |.+.... ..
T Consensus 168 ~pTivVaG~PNVGKSSlv~~lT~Ak-----------------------pEvA~YPF-------TTK~i~vGhfe~~~~R~ 217 (346)
T COG1084 168 LPTIVVAGYPNVGKSSLVRKLTTAK-----------------------PEVAPYPF-------TTKGIHVGHFERGYLRI 217 (346)
T ss_pred CCeEEEecCCCCcHHHHHHHHhcCC-----------------------CccCCCCc-------cccceeEeeeecCCceE
Confidence 4689999999999999999999932 23444442 55554 4443332 34
Q ss_pred eEEeCcccCCccccc
Q 020346 236 YLADTPGFNQPSLLK 250 (327)
Q Consensus 236 ~i~Dtpg~~~~~l~~ 250 (327)
.++||||+-+..++.
T Consensus 218 QvIDTPGlLDRPl~E 232 (346)
T COG1084 218 QVIDTPGLLDRPLEE 232 (346)
T ss_pred EEecCCcccCCChHH
Confidence 789999998766543
|
|
| >cd01878 HflX HflX subfamily | Back alignment and domain information |
|---|
Probab=97.81 E-value=2.9e-05 Score=68.96 Aligned_cols=23 Identities=43% Similarity=0.640 Sum_probs=21.4
Q ss_pred CEEEEEcCCCCCHHHHHHHHcCC
Q 020346 160 QTTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 160 ~~v~lvG~sG~GKSTLln~L~g~ 182 (327)
-.++|+|++|||||||+|.|.+.
T Consensus 42 ~~I~iiG~~g~GKStLl~~l~~~ 64 (204)
T cd01878 42 PTVALVGYTNAGKSTLFNALTGA 64 (204)
T ss_pred CeEEEECCCCCCHHHHHHHHhcc
Confidence 48999999999999999999983
|
A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms. |
| >PRK09825 idnK D-gluconate kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.79 E-value=1.9e-05 Score=69.52 Aligned_cols=24 Identities=25% Similarity=0.458 Sum_probs=23.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcC
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g 181 (327)
+|++++|+|+||+|||||+++|.+
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~ 25 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAA 25 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999999999
|
|
| >PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments [] | Back alignment and domain information |
|---|
Probab=97.78 E-value=5.9e-05 Score=71.35 Aligned_cols=23 Identities=43% Similarity=0.741 Sum_probs=21.1
Q ss_pred EEEEEcCCCCCHHHHHHHHcCCC
Q 020346 161 TTVIVGPSGVGKSSLINALRSSP 183 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g~~ 183 (327)
.++++|+||+|||||||.|.+..
T Consensus 6 nImVvG~sG~GKTTFIntL~~~~ 28 (281)
T PF00735_consen 6 NIMVVGESGLGKTTFINTLFNSD 28 (281)
T ss_dssp EEEEEECTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 58999999999999999999954
|
Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C. |
| >cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans | Back alignment and domain information |
|---|
Probab=97.77 E-value=4.6e-05 Score=64.88 Aligned_cols=22 Identities=55% Similarity=0.694 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHcCC
Q 020346 161 TTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g~ 182 (327)
+++++|.+|||||||+|.|.+.
T Consensus 2 ~i~~~G~~~~GKssli~~l~~~ 23 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLTRA 23 (168)
T ss_pred eEEEEcCCCCCHHHHHHHHhcC
Confidence 5899999999999999999983
|
NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins. |
| >cd01850 CDC_Septin CDC/Septin | Back alignment and domain information |
|---|
Probab=97.76 E-value=9.2e-05 Score=69.80 Aligned_cols=23 Identities=43% Similarity=0.742 Sum_probs=21.0
Q ss_pred EEEEEcCCCCCHHHHHHHHcCCC
Q 020346 161 TTVIVGPSGVGKSSLINALRSSP 183 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g~~ 183 (327)
.++++|+||+|||||+|.|.+..
T Consensus 6 ~I~vvG~sg~GKSTliN~L~~~~ 28 (276)
T cd01850 6 NIMVVGESGLGKSTFINTLFNTK 28 (276)
T ss_pred EEEEEcCCCCCHHHHHHHHHcCC
Confidence 68999999999999999999843
|
Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities. |
| >TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE | Back alignment and domain information |
|---|
Probab=97.76 E-value=5.1e-05 Score=76.17 Aligned_cols=25 Identities=48% Similarity=0.587 Sum_probs=23.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcCC
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g~ 182 (327)
.|-.++|+|++|||||||+|.|++.
T Consensus 202 ~g~kVvIvG~~nvGKSSLiN~L~~~ 226 (442)
T TIGR00450 202 DGFKLAIVGSPNVGKSSLLNALLKQ 226 (442)
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCC
Confidence 5678999999999999999999983
|
TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer. |
| >PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence | Back alignment and domain information |
|---|
Probab=97.74 E-value=2.6e-05 Score=76.29 Aligned_cols=23 Identities=52% Similarity=0.728 Sum_probs=21.0
Q ss_pred CCEEEEEcCCCCCHHHHHHHHcC
Q 020346 159 DQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 159 g~~v~lvG~sG~GKSTLln~L~g 181 (327)
.-.+||+|.||+|||||||+|.|
T Consensus 35 ~l~IaV~G~sGsGKSSfINalrG 57 (376)
T PF05049_consen 35 PLNIAVTGESGSGKSSFINALRG 57 (376)
T ss_dssp -EEEEEEESTTSSHHHHHHHHTT
T ss_pred ceEEEEECCCCCCHHHHHHHHhC
Confidence 45799999999999999999999
|
IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A. |
| >cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins | Back alignment and domain information |
|---|
Probab=97.72 E-value=6e-05 Score=69.18 Aligned_cols=22 Identities=36% Similarity=0.608 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHcCC
Q 020346 161 TTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g~ 182 (327)
.++|+|+||||||||+|.|.|.
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~ 23 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNT 23 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 5899999999999999999993
|
GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding. |
| >TIGR02788 VirB11 P-type DNA transfer ATPase VirB11 | Back alignment and domain information |
|---|
Probab=97.72 E-value=4.4e-05 Score=73.01 Aligned_cols=43 Identities=19% Similarity=0.224 Sum_probs=36.5
Q ss_pred HHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeec
Q 020346 151 DSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205 (327)
Q Consensus 151 ~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~ 205 (327)
+-+.+.+ .|+.++|+|++|||||||+++|++ +++|..|.+.++
T Consensus 135 ~~l~~~v~~~~~ili~G~tGsGKTTll~al~~------------~~~~~~~iv~ie 178 (308)
T TIGR02788 135 EFLRLAIASRKNIIISGGTGSGKTTFLKSLVD------------EIPKDERIITIE 178 (308)
T ss_pred HHHHHHhhCCCEEEEECCCCCCHHHHHHHHHc------------cCCccccEEEEc
Confidence 3345555 789999999999999999999999 888888888875
|
The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA. |
| >cd04159 Arl10_like Arl10-like subfamily | Back alignment and domain information |
|---|
Probab=97.72 E-value=2.7e-05 Score=64.68 Aligned_cols=21 Identities=29% Similarity=0.577 Sum_probs=19.8
Q ss_pred EEEEcCCCCCHHHHHHHHcCC
Q 020346 162 TVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 162 v~lvG~sG~GKSTLln~L~g~ 182 (327)
++|+|++|||||||+|.|.+.
T Consensus 2 i~i~G~~~~GKssl~~~l~~~ 22 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGG 22 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccC
Confidence 689999999999999999994
|
Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved. |
| >PRK09601 GTP-binding protein YchF; Reviewed | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00026 Score=69.18 Aligned_cols=24 Identities=46% Similarity=0.538 Sum_probs=21.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHcCCC
Q 020346 160 QTTVIVGPSGVGKSSLINALRSSP 183 (327)
Q Consensus 160 ~~v~lvG~sG~GKSTLln~L~g~~ 183 (327)
-.++|||.||||||||+|+|.+..
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~ 26 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAG 26 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 478999999999999999999943
|
|
| >PRK09862 putative ATP-dependent protease; Provisional | Back alignment and domain information |
|---|
Probab=97.71 E-value=3.6e-05 Score=78.28 Aligned_cols=62 Identities=16% Similarity=0.277 Sum_probs=51.5
Q ss_pred eeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccc
Q 020346 139 PLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV 212 (327)
Q Consensus 139 ~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~ 212 (327)
.+...++...+++.+++.+ .|+.++|+|+||+|||||++.|.| +.+|.+|++.++...+..+
T Consensus 189 d~~~v~Gq~~~~~al~laa~~G~~llliG~~GsGKTtLak~L~g------------llpp~~g~e~le~~~i~s~ 251 (506)
T PRK09862 189 DLSDVIGQEQGKRGLEITAAGGHNLLLIGPPGTGKTMLASRING------------LLPDLSNEEALESAAILSL 251 (506)
T ss_pred CeEEEECcHHHHhhhheeccCCcEEEEECCCCCcHHHHHHHHhc------------cCCCCCCcEEEecchhhhh
Confidence 3444455667888887776 789999999999999999999999 8999999999888776544
|
|
| >TIGR00008 infA translation initiation factor IF-1 | Back alignment and domain information |
|---|
Probab=97.70 E-value=8.5e-05 Score=55.20 Aligned_cols=59 Identities=29% Similarity=0.299 Sum_probs=48.6
Q ss_pred CeeEEEecCCCCceeccCCCCcEEEEEEcccccccCCCcccCcEEEEceecccCCceEE
Q 020346 1 MRVIVQQSEPSRTSDCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMI 59 (327)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vGD~V~~~~~~~~~~~~~i 59 (327)
|.|.|++.-|+..+-...++|....|.++|++++.+..+.+||.|.++..+.+..+|.|
T Consensus 7 ~~G~V~e~L~~~~f~V~l~ng~~vla~i~GKmr~~rI~I~~GD~V~Ve~spyd~tkgrI 65 (68)
T TIGR00008 7 MEGKVTESLPNAMFRVELENGHEVLAHISGKIRMHYIRILPGDKVKVELSPYDLTRGRI 65 (68)
T ss_pred EEEEEEEECCCCEEEEEECCCCEEEEEecCcchhccEEECCCCEEEEEECcccCCcEeE
Confidence 46899999888775544568999999999999988899999999999987665556655
|
This family consists of translation initiation factor IF-1 as found in bacteria and chloroplasts. This protein, about 70 residues in length, consists largely of an S1 RNA binding domain (pfam00575). |
| >PRK07196 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=97.68 E-value=1.9e-05 Score=78.75 Aligned_cols=74 Identities=20% Similarity=0.229 Sum_probs=49.1
Q ss_pred hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccc---cceeecceeeccccccC-CCcce
Q 020346 147 KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPIL---GSKWFEDQRVGEVSTKS-GRGKH 221 (327)
Q Consensus 147 ~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~---G~i~~~g~~v~~~s~~~-~~g~~ 221 (327)
..+++++ +.+ +|++++|+|+||+|||||+++|++ +++|+. |.|-.++.++.+..... .....
T Consensus 143 i~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g------------~~~~dv~vig~IGerg~ev~ef~~~~l~~~gl 209 (434)
T PRK07196 143 VNAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITR------------YTQADVVVVGLIGERGREVKEFIEHSLQAAGM 209 (434)
T ss_pred eeeccce-EeEecceEEEEECCCCCCccHHHHHHhc------------ccCCCeEEEEEEeeecHHHHHHHHHHhhhccc
Confidence 3578888 666 899999999999999999999999 666664 33444444444322111 11112
Q ss_pred eeEEEEEEEccC
Q 020346 222 TTRHVSLLPLSG 233 (327)
Q Consensus 222 tt~~i~~v~q~~ 233 (327)
.++.+.+.+++.
T Consensus 210 ~rsvvv~~~~d~ 221 (434)
T PRK07196 210 AKSVVVAAPADE 221 (434)
T ss_pred ceEEEEEecCCC
Confidence 345677777763
|
|
| >PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed | Back alignment and domain information |
|---|
Probab=97.68 E-value=2.6e-05 Score=71.20 Aligned_cols=32 Identities=31% Similarity=0.401 Sum_probs=29.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccc
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGS 201 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~ 201 (327)
+..+++|.|+||||||||++.|.+ +++++.|.
T Consensus 32 ~~~iigi~G~~GsGKTTl~~~L~~------------~l~~~~g~ 63 (229)
T PRK09270 32 RRTIVGIAGPPGAGKSTLAEFLEA------------LLQQDGEL 63 (229)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH------------HhhhccCC
Confidence 457999999999999999999999 78888887
|
|
| >cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily | Back alignment and domain information |
|---|
Probab=97.66 E-value=7.3e-05 Score=63.42 Aligned_cols=21 Identities=24% Similarity=0.577 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHcC
Q 020346 161 TTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g 181 (327)
+++|+|++|||||||+|.|.+
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~ 22 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRK 22 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHh
Confidence 589999999999999999997
|
IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s. |
| >cd01900 YchF YchF subfamily | Back alignment and domain information |
|---|
Probab=97.64 E-value=6.2e-05 Score=70.92 Aligned_cols=22 Identities=50% Similarity=0.608 Sum_probs=20.1
Q ss_pred EEEEcCCCCCHHHHHHHHcCCC
Q 020346 162 TVIVGPSGVGKSSLINALRSSP 183 (327)
Q Consensus 162 v~lvG~sG~GKSTLln~L~g~~ 183 (327)
++|||.|+||||||+|+|.+..
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~ 22 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAG 22 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCC
Confidence 5899999999999999999944
|
YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor. |
| >PTZ00258 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=97.64 E-value=9.9e-05 Score=72.78 Aligned_cols=25 Identities=40% Similarity=0.461 Sum_probs=22.8
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcCC
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g~ 182 (327)
.+-.++|||.||||||||+|+|.+.
T Consensus 20 ~~~kvgIVG~PNvGKSTLfnaLt~~ 44 (390)
T PTZ00258 20 NNLKMGIVGLPNVGKSTTFNALCKQ 44 (390)
T ss_pred CCcEEEEECCCCCChHHHHHHHhcC
Confidence 5678999999999999999999884
|
|
| >cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain | Back alignment and domain information |
|---|
Probab=97.63 E-value=8.6e-05 Score=67.81 Aligned_cols=23 Identities=35% Similarity=0.544 Sum_probs=21.3
Q ss_pred CEEEEEcCCCCCHHHHHHHHcCC
Q 020346 160 QTTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 160 ~~v~lvG~sG~GKSTLln~L~g~ 182 (327)
.+++|+|+.++|||||||.|.|.
T Consensus 8 ~vvsv~G~~~sGKS~llN~l~~~ 30 (224)
T cd01851 8 AVVSVFGPQSSGKSFLLNHLFGT 30 (224)
T ss_pred EEEEEECCCCCCHHHHHHHHhCC
Confidence 47899999999999999999994
|
Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 327 | ||||
| 1t9h_A | 307 | The Crystal Structure Of Yloq, A Circularly Permute | 4e-42 | ||
| 1u0l_A | 301 | Crystal Structure Of Yjeq From Thermotoga Maritima | 3e-32 | ||
| 2yv5_A | 302 | Crystal Structure Of Yjeq From Aquifex Aeolicus Len | 8e-26 | ||
| 2rcn_A | 358 | Crystal Structure Of The Ribosomal Interacting Gtpa | 2e-24 | ||
| 2ykr_W | 350 | 30s Ribosomal Subunit With Rsga Bound In The Presen | 8e-24 | ||
| 4a2i_V | 277 | Cryo-Electron Microscopy Structure Of The 30s Subun | 1e-17 |
| >pdb|1T9H|A Chain A, The Crystal Structure Of Yloq, A Circularly Permuted Gtpase Length = 307 | Back alignment and structure |
|
| >pdb|1U0L|A Chain A, Crystal Structure Of Yjeq From Thermotoga Maritima Length = 301 | Back alignment and structure |
|
| >pdb|2YV5|A Chain A, Crystal Structure Of Yjeq From Aquifex Aeolicus Length = 302 | Back alignment and structure |
|
| >pdb|2RCN|A Chain A, Crystal Structure Of The Ribosomal Interacting Gtpase Yjeq From The Enterobacterial Species Salmonella Typhimurium Length = 358 | Back alignment and structure |
|
| >pdb|2YKR|W Chain W, 30s Ribosomal Subunit With Rsga Bound In The Presence Of Gmppnp Length = 350 | Back alignment and structure |
|
| >pdb|4A2I|V Chain V, Cryo-Electron Microscopy Structure Of The 30s Subunit In Complex With The Yjeq Biogenesis Factor Length = 277 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 Length = 301 | Back alignment and structure |
|---|
Score = 305 bits (784), Expect = e-104
Identities = 90/304 (29%), Positives = 145/304 (47%), Gaps = 40/304 (13%)
Query: 18 DKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANV 77
++TG +LC +R + ++ VGD+V + G+IENV R + P VANV
Sbjct: 28 EETGERILCKLRGKFRLQNLKIYVGDRVEYTPDE--TGSGVIENVLHRKNLLTKPHVANV 85
Query: 78 DHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHT--W 135
D ++L+ ++ P+ + + +FLV AE + + +NK++L DE+ L +
Sbjct: 86 DQVILVVTVKMPETSTYIIDKFLVLAEKNELETVMVINKMDLYDEDDLRKVRELEEIYSG 145
Query: 136 GYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWF 195
Y + S ++ +G++ L + L+ + + + G SGVGKSSL+NA+ +P
Sbjct: 146 LYPIVKTSAKTGMGIEELKEYLKGKISTMAGLSGVGKSSLLNAI--NPGL---------- 193
Query: 196 EPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQS 255
RV EVS K RG+HTT LL GGY+ DTPGF + + +
Sbjct: 194 ----------KLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEE 243
Query: 256 LAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIR 308
L F E +C F++C H+ EP C VK E RY+ Y ++ E+
Sbjct: 244 LKHYFKEFG-------DKQCFFSDCNHVDEPECGVKEAVENGEIAESRYENYVKMFYELL 296
Query: 309 IREE 312
R +
Sbjct: 297 GRRK 300
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 Length = 307 | Back alignment and structure |
|---|
Score = 304 bits (782), Expect = e-103
Identities = 101/309 (32%), Positives = 153/309 (49%), Gaps = 41/309 (13%)
Query: 15 DCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPV 74
D ++ + + C R + +K K LVGD VV + + D+ G + + +R+ E++ PP+
Sbjct: 27 DESEDSDKVIQCRGRGIFRKNKITPLVGDYVVYQAEN--DKEGYLMEIKERTNELIRPPI 84
Query: 75 ANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEE----VLNTWKS 130
NVD +L+FS QP L RFLV E+ I + + K++L++++ + +
Sbjct: 85 CNVDQAVLVFSAVQPSFSTALLDRFLVLVEANDIQPIICITKMDLIEDQDTEDTIQAYAE 144
Query: 131 RLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAAD 190
GY+ S + + L ++ +D+TTV G SGVGKSSL+NA+ SP
Sbjct: 145 DYRNIGYDVYLTSSKDQDSLADIIPHFQDKTTVFAGQSGVGKSSLLNAI--SPEL----- 197
Query: 191 VDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLK 250
R E+S GRGKHTTRHV L+ GG +ADTPGF+
Sbjct: 198 ---------------GLRTNEISEHLGRGKHTTRHVELIHT-SGGLVADTPGFSSLEFTD 241
Query: 251 VTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQL 303
+ ++ L TFP+I+E C F CLHL EP C VK E RY +Y +
Sbjct: 242 IEEEELGYTFPDIREKSS-----SCKFRGCLHLKEPKCAVKQAVEDGELKQYRYDHYVEF 296
Query: 304 LDEIRIREE 312
+ EI+ R+
Sbjct: 297 MTEIKDRKP 305
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} Length = 302 | Back alignment and structure |
|---|
Score = 292 bits (751), Expect = 6e-99
Identities = 82/299 (27%), Positives = 133/299 (44%), Gaps = 44/299 (14%)
Query: 20 TGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDH 79
G + R + K K ++ GD V +D IE V +R ++ P VANVD
Sbjct: 26 DGKTYRGIPRGKVLK-KTKIYAGDYVWGEVVD--PNTFAIEEVEERKNLLIRPKVANVDR 82
Query: 80 LLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLH---TWG 136
++++ ++ P+ + L LV E + + NK++L++EE + + G
Sbjct: 83 VIIVETLKMPEFNNYLLDNMLVVYEYFKVEPVIVFNKIDLLNEEEKKELERWISIYRDAG 142
Query: 137 YEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFE 196
Y+ L S ++ G+D L+ L ++ GPSGVGKSS+++ L
Sbjct: 143 YDVLKVSAKTGEGIDELVDYLEGFICILAGPSGVGKSSILSRL----------------T 186
Query: 197 PILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLK-VTKQS 255
E+ R EVS K+ RG+HTT V L+P G ++ DTPGF++ V +
Sbjct: 187 G-------EELRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKPRE 239
Query: 256 LAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG-------DWERYQYYFQLLDEI 307
+ F E +C + +C H EPGC VK ERY+ Y +++
Sbjct: 240 VRNYFREFL-------RYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYLKIIKVY 291
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V Length = 358 | Back alignment and structure |
|---|
Score = 257 bits (658), Expect = 4e-84
Identities = 78/313 (24%), Positives = 148/313 (47%), Gaps = 52/313 (16%)
Query: 27 VVRALLKKIKRRVLVGDKVVV----GSIDWVDRRGMIENVFQRSTEI--------LDPPV 74
V R +++ R ++ GD+VV + + V+ +G++E V +R++ + + P
Sbjct: 69 VHRCNIRRTIRSLVTGDRVVWRPGKAAAEGVNVKGIVEAVHERTSVLTRPDFYDGVKPIA 128
Query: 75 ANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHT 134
AN+D ++++ ++ P+L + R+LV E+ + + LNK++L+D+E ++ ++
Sbjct: 129 ANIDQIVIVSAI-LPELSLNIIDRYLVGCETLQVEPLIVLNKIDLLDDEGMDFVNEQMDI 187
Query: 135 W---GYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADV 191
+ GY L S ++ GL L + L + ++ G SGVGKSSL+NAL ++
Sbjct: 188 YRNIGYRVLMVSSHTQDGLKPLEEALTGRISIFAGQSGVGKSSLLNAL--LGLQNEI--- 242
Query: 192 DNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKV 251
+VS SG G+HTT L GG + D+PG + L +
Sbjct: 243 ----------------LTNDVSNVSGLGQHTTTAARLYHFPHGGDVIDSPGVREFGLWHL 286
Query: 252 TKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG-------DWERYQYYFQLL 304
+ + Q F E + L C + +C H +PGC ++ R++ Y ++L
Sbjct: 287 EPEQITQGFVEFHDYL-----GHCKYRDCKHDADPGCAIREAVENGAIAETRFENYHRIL 341
Query: 305 DEI---RIREEFQ 314
+ + + R+ F
Sbjct: 342 ESMAQVKTRKNFS 354
|
| >3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str} Length = 368 | Back alignment and structure |
|---|
Score = 61.5 bits (149), Expect = 6e-11
Identities = 40/172 (23%), Positives = 57/172 (33%), Gaps = 39/172 (22%)
Query: 109 PLTLALNKVELVDEEVLNTW-----KSRLHTWGYEP---LFCSVESKLGLDSLLQRLRDQ 160
+ L NK +L+ + V + + G +P S G+ L +
Sbjct: 98 KVLLVGNKADLIPKSVKHDKVKHWMRYSAKQLGLKPEDVFLISAAKGQGIAELADAIEYY 157
Query: 161 ----TTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKS 216
+VG + VGKS+ IN + + E + V S
Sbjct: 158 RGGKDVYVVGCTNVGKSTFINRM-------------------IKEFSDETENVITTSHFP 198
Query: 217 GRGKHTTRHVSLLPLSGGGYLADTPGFNQPS--LLKVTKQSLAQTFP--EIK 264
G TT + +PL L DTPG V KQSL P EIK
Sbjct: 199 G----TTLDLIDIPLDEESSLYDTPGIINHHQMAHYVGKQSLKLITPTKEIK 246
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 60.3 bits (145), Expect = 3e-10
Identities = 48/313 (15%), Positives = 93/313 (29%), Gaps = 73/313 (23%)
Query: 33 KKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRST--EILDPPVANVDHLLLLFSM--DQ 88
K I + V + V + D D + M +++ + I+ V L LF +
Sbjct: 19 KDI---LSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSK-DAVSGTLRLFWTLLSK 74
Query: 89 PKLEPFALTRFLVEAESTGIPLTLALNKVELVD----EEVLNTWKSRLHTWG--YEPLF- 141
+ + +F+ E ++ K E + + RL+ +
Sbjct: 75 QEE---MVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNV 131
Query: 142 CSVESKLGLDSLLQRLRDQTTVIV-GPSGVGKSSL-INALRSSPHASDAADVDNWFE-PI 198
++ L L L LR V++ G G GK+ + ++ S V + I
Sbjct: 132 SRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSY-------KVQCKMDFKI 184
Query: 199 LGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQ 258
W + ++ L L Y D ++ K +
Sbjct: 185 F---WL---NLKNCNSPETV---------LEMLQKLLYQIDPNWTSRSDHSSNIKLRIHS 229
Query: 259 TFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWERYQYYFQLLDEIRIRE-----EF 313
E++ +LK+ + NCL +V L ++ +
Sbjct: 230 IQAELRRLLKSK-----PYENCL-------LV-------------LLNVQNAKAWNAFNL 264
Query: 314 QLRTFGTKREGDV 326
+ T R V
Sbjct: 265 SCKILLTTRFKQV 277
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 41.0 bits (95), Expect = 4e-04
Identities = 57/367 (15%), Positives = 104/367 (28%), Gaps = 91/367 (24%)
Query: 7 QSEPSRTSDCNDKTGVELLCVVRALL--KKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQ 64
+ R + +R LL K + +LV V + + N F
Sbjct: 221 SNIKLRIHSIQAE--------LRRLLKSKPYENCLLVLLNV------Q-NAK--AWNAFN 263
Query: 65 RSTEIL----DPPVAN-----------VDHLLLLFSMDQPKLEPFALTRFL--------V 101
S +IL V + +DH + + D+ ++L
Sbjct: 264 LSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDE-VKSLLL--KYLDCRPQDLPR 320
Query: 102 EAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVESKL-GLDSLLQRLRDQ 160
E T P L++ + D L TW + H + L +ES L L+ R
Sbjct: 321 EV-LTTNPRRLSIIAESIRDG--LATWDNWKHV-NCDKLTTIIESSLNVLEPAEYRKMFD 376
Query: 161 TTVIVGPSGVG-KSSLINALRSSPHASDAADVDNWFEPI-LGSKWFEDQRVG----EVST 214
+ P + L++ + SD V N L K ++ + +
Sbjct: 377 RLSVF-PPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLEL 435
Query: 215 KSGRGKHTTRHVSLL---------------PLSGGGYLADTPGFNQPSLLKVTKQS-LAQ 258
K H S++ P Y G + LK +
Sbjct: 436 KVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHH----LKNIEHPERMT 491
Query: 259 TFPE-------IKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWERYQYYFQLLDEIRIRE 311
F +++ ++ + A + + L+ + Y+ Y D R
Sbjct: 492 LFRMVFLDFRFLEQKIRHDSTAWNASGSILNT-------LQQLKFYKPYICDNDPKYERL 544
Query: 312 EFQLRTF 318
+ F
Sbjct: 545 VNAILDF 551
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 41.0 bits (95), Expect = 5e-04
Identities = 55/352 (15%), Positives = 107/352 (30%), Gaps = 88/352 (25%)
Query: 17 NDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSI-----DWVDRRGMIENVFQRSTEILD 71
+ +G L LL K + V + V + ++ I+ ++ + +
Sbjct: 59 DAVSGTLRLFWT--LLSKQEEMV----QKFVEEVLRINYKFLMSP--IKTEQRQPSMMTR 110
Query: 72 PPVANVDHLL----LLFSMDQPKLEPF-ALTRFLVEAES-TGIPL---------TLALNK 116
+ D L + + +L+P+ L + L+E + + +AL+
Sbjct: 111 MYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDV 170
Query: 117 VELVDEEVLNTWKSRLHTW---GYEPLFCSVESKLG-LDSLLQRLR-------DQTTVIV 165
+V ++ W S E+ L L LL ++ D ++ I
Sbjct: 171 CL--SYKVQCKMDFKIF-WLNLKNC---NSPETVLEMLQKLLYQIDPNWTSRSDHSSNIK 224
Query: 166 GPSGVGKSSLINALRSSPHASDAADVDN-WFEPILGSKWFEDQ-------RVGEVSTKSG 217
++ L L+S P+ + + N F R +V+
Sbjct: 225 LRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAW--NAFNLSCKILLTTRFKQVTDFLS 282
Query: 218 RGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSF 277
TT H+SL S + LLK Q P E+L N P
Sbjct: 283 AA--TTTHISLDHHSMTLTPDEVKSL----LLKYLDCR-PQDLPR--EVLTTN-P----- 327
Query: 278 NNCLHLGEPGCVVKGD---WERYQYY------------FQLLDEIRIREEFQ 314
L ++ W+ +++ +L+ R+ F
Sbjct: 328 ---RRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFD 376
|
| >1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8 Length = 282 | Back alignment and structure |
|---|
Score = 56.9 bits (138), Expect = 1e-09
Identities = 30/161 (18%), Positives = 49/161 (30%), Gaps = 47/161 (29%)
Query: 100 LVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRD 159
++E P + LNK + D V WK G L + + GL+ ++ ++
Sbjct: 43 MIEDILKNKPRIMLLNKADKADAAVTQQWKEHFENQGIRSLSINSVNGQGLNQIVPASKE 102
Query: 160 Q------------------TTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGS 201
+I+G VGKS+LIN L
Sbjct: 103 ILQEKFDRMRAKGVKPRAIRALIIGIPNVGKSTLINRLAKK------------------- 143
Query: 202 KWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPG 242
+ + + G T + + L DTPG
Sbjct: 144 ------NIAKTGDRPG----ITTSQQWVKVGKELELLDTPG 174
|
| >3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A* Length = 262 | Back alignment and structure |
|---|
Score = 56.5 bits (137), Expect = 2e-09
Identities = 31/143 (21%), Positives = 49/143 (34%), Gaps = 34/143 (23%)
Query: 109 PLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRL---RDQTTVIV 165
+ LNKV++ DE+ W G + LL++L R +IV
Sbjct: 48 ETIILLNKVDIADEKTTKKWVEFFKKQGKRVITTH--KGEPRKVLLKKLSFDRLARVLIV 105
Query: 166 GPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRH 225
G GKS++IN L+ +R V + G T+
Sbjct: 106 GVPNTGKSTIINKLKG-------------------------KRASSVGAQPG----ITKG 136
Query: 226 VSLLPLSGGGYLADTPGFNQPSL 248
+ L G + DTPG ++
Sbjct: 137 IQWFSLENGVKILDTPGILYKNI 159
|
| >3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus} Length = 369 | Back alignment and structure |
|---|
Score = 55.0 bits (132), Expect = 1e-08
Identities = 38/172 (22%), Positives = 56/172 (32%), Gaps = 40/172 (23%)
Query: 109 PLTLALNKVELVDEEV----LNTW-KSRLHTWGYEPL---FCSVESKLGLDSLLQRL--- 157
P+ L NK +L+ V L W + G P+ S +G+ +++ +
Sbjct: 100 PILLVGNKADLLPRSVKYPKLLRWMRRMAEELGLCPVDVCLVSAAKGIGMAKVMEAINRY 159
Query: 158 -RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKS 216
+VG + VGKS+ IN + V S
Sbjct: 160 REGGDVYVVGCTNVGKSTFINRIIEEATGKG--------------------NVITTSYFP 199
Query: 217 GRGKHTTRHVSLLPLSGGGYLADTPGFNQPS--LLKVTKQSLAQTFP--EIK 264
G TT + +PL G L DTPG V + L P EI
Sbjct: 200 G----TTLDMIEIPLESGATLYDTPGIINHHQMAHFVDARDLKIITPKREIH 247
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} Length = 357 | Back alignment and structure |
|---|
Score = 46.8 bits (111), Expect = 5e-06
Identities = 21/114 (18%), Positives = 47/114 (41%), Gaps = 7/114 (6%)
Query: 53 VDRRGMIENVFQRSTEILDPPVANVDHL--LLLFSMDQPKLEPFALTRFLVEAES----- 105
+D G+++ EI + + +L L+++ D + F L + E
Sbjct: 219 IDTPGLLDRPISERNEIEKQAILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEF 278
Query: 106 TGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRD 159
+P + +NK+++ DEE + + + G P+ S G+D + + +
Sbjct: 279 KDLPFLVVINKIDVADEENIKRLEKFVKEKGLNPIKISALKGTGIDLVKEEIIK 332
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* Length = 413 | Back alignment and structure |
|---|
Score = 42.4 bits (99), Expect = 1e-04
Identities = 18/102 (17%), Positives = 27/102 (26%), Gaps = 29/102 (28%)
Query: 150 LDSLLQRLRDQTT--VIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQ 207
+ L+ + + G +G GKSS IN LR +
Sbjct: 58 ISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEE--------------------- 96
Query: 208 RVGEVSTKSGRGKHTTRHVSLLPLSGGG--YLADTPGFNQPS 247
E + K+G T D PG +
Sbjct: 97 ---EGAAKTGVV-EVTMERHPYKHPNIPNVVFWDLPGIGSTN 134
|
| >3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A* Length = 262 | Back alignment and structure |
|---|
Score = 41.7 bits (98), Expect = 2e-04
Identities = 20/107 (18%), Positives = 37/107 (34%), Gaps = 37/107 (34%)
Query: 150 LDSLLQRLRDQ-----TTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWF 204
L +L+ + T +++G GVGKSS +N+ ++G +
Sbjct: 22 LIEFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNS-------------------LIGEQVV 62
Query: 205 EDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGY---LADTPGFNQPSL 248
VS ++ + GG+ + DTPG +
Sbjct: 63 ------RVSPFQA----EGLRPVMVSRTMGGFTINIIDTPGLVEAGY 99
|
| >1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A* Length = 270 | Back alignment and structure |
|---|
Score = 39.9 bits (93), Expect = 6e-04
Identities = 17/86 (19%), Positives = 28/86 (32%), Gaps = 32/86 (37%)
Query: 161 TTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGK 220
T +++G GVGKSS +N+ I+G + +
Sbjct: 41 TILVMGKGGVGKSSTVNS-------------------IIGERVV----------SISPFQ 71
Query: 221 HTTRHVSLLPLSGGG---YLADTPGF 243
++ S G + DTPG
Sbjct: 72 SEGPRPVMVSRSRAGFTLNIIDTPGL 97
|
| >3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana} Length = 423 | Back alignment and structure |
|---|
Score = 40.0 bits (94), Expect = 6e-04
Identities = 23/105 (21%), Positives = 33/105 (31%), Gaps = 38/105 (36%)
Query: 164 IVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTT 223
+ G VGKSS +NAL +G Q V VS +G TT
Sbjct: 39 VAGRRNVGKSSFMNAL-------------------VG------QNVSIVSDYAG----TT 69
Query: 224 RHVSLLPLSGGGY----LADTPGFNQPSLL-----KVTKQSLAQT 259
+ L DTPG + L + ++ +
Sbjct: 70 TDPVYKSMELHPIGPVTLVDTPGLDDVGELGRLRVEKARRVFYRA 114
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} Length = 239 | Back alignment and structure |
|---|
Score = 39.6 bits (92), Expect = 7e-04
Identities = 26/121 (21%), Positives = 37/121 (30%), Gaps = 37/121 (30%)
Query: 155 QRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214
R V+VG +G GKS+ N+ ILG K F + T
Sbjct: 25 PRNSQLRIVLVGKTGAGKSATGNS-------------------ILGRKVFHSGTAAKSIT 65
Query: 215 KS---GRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANE 271
K + ++ DTPG T+ A+T EI +
Sbjct: 66 KKCEKRSSSWKETELVVV---------DTPGIFD------TEVPNAETSKEIIRCILLTS 110
Query: 272 P 272
P
Sbjct: 111 P 111
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 327 | |||
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 100.0 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 100.0 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 100.0 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 100.0 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 99.86 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 99.86 | |
| 4g1u_C | 266 | Hemin import ATP-binding protein HMUV; membrane tr | 99.85 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 99.85 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 99.85 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 99.85 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 99.85 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 99.85 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 99.85 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 99.85 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 99.85 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 99.85 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 99.85 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 99.84 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 99.84 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 99.84 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 99.84 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 99.84 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 99.84 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 99.84 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 99.83 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 99.83 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 99.83 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 99.83 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 99.83 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 99.81 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 99.81 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 99.8 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 99.8 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 99.8 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 99.8 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 99.8 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 99.79 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 99.79 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 99.79 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 99.79 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 99.78 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 99.78 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 99.78 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 99.78 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 99.77 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 99.77 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 99.76 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 99.75 | |
| 3cnl_A | 262 | YLQF, putative uncharacterized protein; circular p | 99.72 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 99.72 | |
| 1puj_A | 282 | YLQF, conserved hypothetical protein YLQF; structu | 99.72 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 99.7 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 99.7 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 99.58 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 99.56 | |
| 3ec1_A | 369 | YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase | 99.56 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 99.56 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 99.55 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 99.55 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 99.54 | |
| 3b85_A | 208 | Phosphate starvation-inducible protein; PHOH2, ATP | 99.54 | |
| 3h2y_A | 368 | GTPase family protein; GTP-binding protein YQEH, p | 99.53 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 99.5 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 99.46 | |
| 1tq4_A | 413 | IIGP1, interferon-inducible GTPase; interferon gam | 99.42 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 99.4 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 99.4 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 99.39 | |
| 2pt7_A | 330 | CAG-ALFA; ATPase, protein-protein complex, type IV | 99.37 | |
| 1z6g_A | 218 | Guanylate kinase; structural genomics, SGC, struct | 99.36 | |
| 2npi_A | 460 | Protein CLP1; CLP1-PCF11 complex, ATP binding, ter | 99.32 | |
| 2v9p_A | 305 | Replication protein E1; AAA+ molecular motor, DNA | 99.31 | |
| 3aez_A | 312 | Pantothenate kinase; transferase, homodimer, COA b | 99.28 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 99.27 | |
| 2qnr_A | 301 | Septin-2, protein NEDD5; structural genomics conso | 99.26 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 99.24 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 99.2 | |
| 4aby_A | 415 | DNA repair protein RECN; hydrolase, double strand | 99.2 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 99.15 | |
| 2hjg_A | 436 | GTP-binding protein ENGA; GTPase ENGA KH-domain, h | 99.15 | |
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 99.15 | |
| 2dpy_A | 438 | FLII, flagellum-specific ATP synthase; beta barrel | 99.13 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 99.1 | |
| 1htw_A | 158 | HI0065; nucleotide-binding fold, structural genomi | 99.1 | |
| 4gp7_A | 171 | Metallophosphoesterase; polynucleotide kinase phos | 99.08 | |
| 2f1r_A | 171 | Molybdopterin-guanine dinucleotide biosynthesis pr | 99.07 | |
| 2qm8_A | 337 | GTPase/ATPase; G protein, G3E, metallochaperone, c | 99.05 | |
| 2i3b_A | 189 | HCR-ntpase, human cancer-related ntpase; AAA, ross | 98.99 | |
| 2jeo_A | 245 | Uridine-cytidine kinase 1; UCK, transferase, ATP-b | 98.99 | |
| 1p9r_A | 418 | General secretion pathway protein E; bacterial typ | 98.98 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 98.98 | |
| 4dcu_A | 456 | GTP-binding protein ENGA; GTPase, GDP, protein bin | 98.97 | |
| 3b9q_A | 302 | Chloroplast SRP receptor homolog, alpha subunit CP | 98.96 | |
| 1rj9_A | 304 | FTSY, signal recognition protein; SRP-GTPase domai | 98.93 | |
| 2qag_B | 427 | Septin-6, protein NEDD5; cell cycle, cell division | 98.92 | |
| 2gza_A | 361 | Type IV secretion system protein VIRB11; ATPase, h | 98.91 | |
| 2og2_A | 359 | Putative signal recognition particle receptor; nuc | 98.83 | |
| 1ah9_A | 71 | IF1, initiation factor 1; ribosome binding, protei | 98.81 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 98.79 | |
| 2x8a_A | 274 | Nuclear valosin-containing protein-like; nuclear p | 98.76 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 98.75 | |
| 1nij_A | 318 | Hypothetical protein YJIA; structural genomics, P- | 98.74 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 98.73 | |
| 2obl_A | 347 | ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O | 98.71 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 98.71 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 98.7 | |
| 1hr0_W | 71 | Translation initiation factor; ribosomal subunit, | 98.68 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 98.68 | |
| 3szr_A | 608 | Interferon-induced GTP-binding protein MX1; interf | 98.68 | |
| 1udx_A | 416 | The GTP-binding protein OBG; TGS domain, riken str | 98.65 | |
| 1lw7_A | 365 | Transcriptional regulator NADR; NMN, NMN adenylyl | 98.6 | |
| 1e69_A | 322 | Chromosome segregation SMC protein; structural mai | 98.6 | |
| 1znw_A | 207 | Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans | 98.56 | |
| 1sq5_A | 308 | Pantothenate kinase; P-loop, transferase; HET: PAU | 98.55 | |
| 3i4o_A | 79 | Translation initiation factor IF-1; cytoplasm, pro | 98.55 | |
| 2oqk_A | 117 | Putative translation initiation factor EIF-1A; mal | 98.55 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 98.53 | |
| 2e87_A | 357 | Hypothetical protein PH1320; GTP-binding, GTPase, | 98.51 | |
| 3asz_A | 211 | Uridine kinase; cytidine phosphorylation, transfer | 98.47 | |
| 1s96_A | 219 | Guanylate kinase, GMP kinase; E.coli, dimer, SAD, | 98.44 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 98.44 | |
| 2oap_1 | 511 | GSPE-2, type II secretion system protein; hexameri | 98.43 | |
| 3jvv_A | 356 | Twitching mobility protein; hexameric P-loop ATPas | 98.42 | |
| 1lvg_A | 198 | Guanylate kinase, GMP kinase; transferase; HET: AD | 98.42 | |
| 3lnc_A | 231 | Guanylate kinase, GMP kinase; ALS collaborative cr | 98.41 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 98.4 | |
| 3tr0_A | 205 | Guanylate kinase, GMP kinase; purines, pyrimidines | 98.4 | |
| 1ixz_A | 254 | ATP-dependent metalloprotease FTSH; AAA domain fol | 98.39 | |
| 1iy2_A | 278 | ATP-dependent metalloprotease FTSH; AAA domain fol | 98.37 | |
| 2yhs_A | 503 | FTSY, cell division protein FTSY; cell cycle, prot | 98.37 | |
| 1qhl_A | 227 | Protein (cell division protein MUKB); SMC, chromos | 98.36 | |
| 3a00_A | 186 | Guanylate kinase, GMP kinase; domain movement, dim | 98.35 | |
| 3c8u_A | 208 | Fructokinase; YP_612366.1, putative fructose trans | 98.32 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 98.27 | |
| 4a74_A | 231 | DNA repair and recombination protein RADA; hydrola | 98.26 | |
| 3pqc_A | 195 | Probable GTP-binding protein ENGB; rossmann fold, | 98.26 | |
| 1ewq_A | 765 | DNA mismatch repair protein MUTS; multiple domains | 98.26 | |
| 3qf7_A | 365 | RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1. | 98.26 | |
| 1svi_A | 195 | GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro | 98.25 | |
| 3t34_A | 360 | Dynamin-related protein 1A, linker, dynamin-relat | 98.24 | |
| 3uie_A | 200 | Adenylyl-sulfate kinase 1, chloroplastic; rossmann | 98.23 | |
| 1cr0_A | 296 | DNA primase/helicase; RECA-type protein fold, tran | 98.22 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 98.21 | |
| 2o8b_B | 1022 | DNA mismatch repair protein MSH6; DNA damage respo | 98.2 | |
| 1ega_A | 301 | Protein (GTP-binding protein ERA); GTPase, RNA-bin | 98.18 | |
| 4dhe_A | 223 | Probable GTP-binding protein ENGB; melioidosis, RA | 98.17 | |
| 2bbw_A | 246 | Adenylate kinase 4, AK4; nucleotide kinase, nucleo | 98.17 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 98.16 | |
| 3nwj_A | 250 | ATSK2; P loop, shikimate, nucleoside monophosphate | 98.16 | |
| 4e22_A | 252 | Cytidylate kinase; P-loop, CMP/ATP binding, transf | 98.14 | |
| 1in4_A | 334 | RUVB, holliday junction DNA helicase RUVB; AAA+-cl | 98.14 | |
| 3k1j_A | 604 | LON protease, ATP-dependent protease LON; ATP-bind | 98.13 | |
| 3iev_A | 308 | GTP-binding protein ERA; ERA, GTPase, KH domain, a | 98.11 | |
| 2bdt_A | 189 | BH3686; alpha-beta protein, structural genomics, P | 98.09 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 98.08 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 98.06 | |
| 3ney_A | 197 | 55 kDa erythrocyte membrane protein; structural ge | 98.06 | |
| 3thx_A | 934 | DNA mismatch repair protein MSH2; ABC family ATPas | 98.05 | |
| 4eun_A | 200 | Thermoresistant glucokinase; putative sugar kinase | 98.04 | |
| 3thx_B | 918 | DNA mismatch repair protein MSH3; ABC family ATPas | 98.02 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 98.02 | |
| 1wf3_A | 301 | GTP-binding protein; GTPase, riken structural geno | 98.02 | |
| 1odf_A | 290 | YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser | 98.01 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 98.01 | |
| 3k53_A | 271 | Ferrous iron transport protein B; GTPase fold, hel | 97.98 | |
| 2j41_A | 207 | Guanylate kinase; GMP, GMK, transferase, ATP-bindi | 97.98 | |
| 2wjg_A | 188 | FEOB, ferrous iron transport protein B homolog; me | 97.98 | |
| 3lxx_A | 239 | GTPase IMAP family member 4; structural genomics c | 97.98 | |
| 3lxw_A | 247 | GTPase IMAP family member 1; immunity, structural | 97.97 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 97.96 | |
| 3iby_A | 256 | Ferrous iron transport protein B; G protein, G dom | 97.96 | |
| 1ko7_A | 314 | HPR kinase/phosphatase; protein kinase, phosphotra | 97.95 | |
| 3tqc_A | 321 | Pantothenate kinase; biosynthesis of cofactors, pr | 97.95 | |
| 3t5d_A | 274 | Septin-7; GTP-binding protein, cytoskeleton, signa | 97.94 | |
| 4a9a_A | 376 | Ribosome-interacting GTPase 1; DRG-DFRP complex, r | 97.94 | |
| 1ni3_A | 392 | YCHF GTPase, YCHF GTP-binding protein; structural | 97.93 | |
| 2vp4_A | 230 | Deoxynucleoside kinase; ATP-binding, DNA synthesis | 97.93 | |
| 2qag_A | 361 | Septin-2, protein NEDD5; cell cycle, cell division | 97.92 | |
| 1rz3_A | 201 | Hypothetical protein rbstp0775; MCSG, structural g | 97.9 | |
| 3kta_A | 182 | Chromosome segregation protein SMC; structural mai | 97.87 | |
| 3i8s_A | 274 | Ferrous iron transport protein B; GTPase, GPCR, ir | 97.87 | |
| 2www_A | 349 | Methylmalonic aciduria type A protein, mitochondri | 97.86 | |
| 3a1s_A | 258 | Iron(II) transport protein B; FEOB, iron transport | 97.82 | |
| 1m2o_B | 190 | GTP-binding protein SAR1, GTP binding protein; zin | 97.82 | |
| 1h65_A | 270 | Chloroplast outer envelope protein OEP34; GTPase, | 97.82 | |
| 3vaa_A | 199 | Shikimate kinase, SK; structural genomics, center | 97.82 | |
| 1z0j_A | 170 | RAB-22, RAS-related protein RAB-22A; RAB GTPase, R | 97.82 | |
| 2p67_A | 341 | LAO/AO transport system kinase; ARGK, structural G | 97.81 | |
| 3tau_A | 208 | Guanylate kinase, GMP kinase; structural genomics, | 97.81 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 97.81 | |
| 1knq_A | 175 | Gluconate kinase; ALFA/beta structure, transferase | 97.8 | |
| 2nzj_A | 175 | GTP-binding protein REM 1; GDP/GTP binding, GTP hy | 97.8 | |
| 1f6b_A | 198 | SAR1; gtpases, N-terminal helix, Mg-containing com | 97.8 | |
| 3def_A | 262 | T7I23.11 protein; chloroplast, TOC33, GTPase, hydr | 97.8 | |
| 1f5n_A | 592 | Interferon-induced guanylate-binding protein 1; GB | 97.78 | |
| 1n0w_A | 243 | DNA repair protein RAD51 homolog 1; DNA repair, ho | 97.78 | |
| 2ohf_A | 396 | Protein OLA1, GTP-binding protein 9; ATPase, GTPas | 97.78 | |
| 2xtp_A | 260 | GTPase IMAP family member 2; immune system, G prot | 97.77 | |
| 1ek0_A | 170 | Protein (GTP-binding protein YPT51); vesicular tra | 97.77 | |
| 3b1v_A | 272 | Ferrous iron uptake transporter protein B; G prote | 97.77 | |
| 4dcu_A | 456 | GTP-binding protein ENGA; GTPase, GDP, protein bin | 97.76 | |
| 3q72_A | 166 | GTP-binding protein RAD; G-domain, CAV2 beta, sign | 97.76 | |
| 1wms_A | 177 | RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p | 97.75 | |
| 3tw8_B | 181 | RAS-related protein RAB-35; longin domain, RAB GTP | 97.75 | |
| 1kao_A | 167 | RAP2A; GTP-binding protein, small G protein, GDP, | 97.74 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 97.73 | |
| 1pzn_A | 349 | RAD51, DNA repair and recombination protein RAD51, | 97.72 | |
| 1r2q_A | 170 | RAS-related protein RAB-5A; GTPase, GNP, atomic re | 97.7 | |
| 1jal_A | 363 | YCHF protein; nucleotide-binding fold, structural | 97.7 | |
| 2hjg_A | 436 | GTP-binding protein ENGA; GTPase ENGA KH-domain, h | 97.69 | |
| 1z2a_A | 168 | RAS-related protein RAB-23; RAB GTPase, vesicular | 97.69 | |
| 2fg5_A | 192 | RAB-22B, RAS-related protein RAB-31; G-protein, GT | 97.69 | |
| 2cxx_A | 190 | Probable GTP-binding protein ENGB; structural geno | 97.69 | |
| 2erx_A | 172 | GTP-binding protein DI-RAS2; GTP hydrolysis, trans | 97.68 | |
| 3t5g_A | 181 | GTP-binding protein RHEB; immunoglobulin-like beta | 97.68 | |
| 1jwy_B | 315 | Dynamin A GTPase domain; dynamin, GTPase, GDP, myo | 97.67 | |
| 1u8z_A | 168 | RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH | 97.66 | |
| 4dsu_A | 189 | GTPase KRAS, isoform 2B; small G-protein, signalin | 97.66 | |
| 2dyk_A | 161 | GTP-binding protein; GTPase, ribosome-binding prot | 97.66 | |
| 1c1y_A | 167 | RAS-related protein RAP-1A; GTP-binding proteins, | 97.66 | |
| 1z08_A | 170 | RAS-related protein RAB-21; RAB GTPase, vesicular | 97.66 | |
| 1cke_A | 227 | CK, MSSA, protein (cytidine monophosphate kinase); | 97.65 | |
| 1x3s_A | 195 | RAS-related protein RAB-18; GTPase, GNP, structura | 97.65 | |
| 1ls1_A | 295 | Signal recognition particle protein; FFH, SRP54, S | 97.65 | |
| 1z0f_A | 179 | RAB14, member RAS oncogene family; RAB GTPase, ves | 97.65 | |
| 3t5g_A | 181 | GTP-binding protein RHEB; immunoglobulin-like beta | 97.65 | |
| 1g16_A | 170 | RAS-related protein SEC4; G protein RAB, signaling | 97.64 | |
| 1zbd_A | 203 | Rabphilin-3A; G protein, effector, RABCDR, synapti | 97.64 | |
| 2ce2_X | 166 | GTPase HRAS; signaling protein, guanine nucleotide | 97.64 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 97.63 | |
| 2oil_A | 193 | CATX-8, RAS-related protein RAB-25; G-protein, GDP | 97.63 | |
| 2qu8_A | 228 | Putative nucleolar GTP-binding protein 1; GTPase, | 97.63 | |
| 3cr8_A | 552 | Sulfate adenylyltranferase, adenylylsulfate kinase | 97.62 | |
| 2y8e_A | 179 | RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti | 97.62 | |
| 2qtf_A | 364 | Protein HFLX, GTP-binding protein; beta-alpha-barr | 97.62 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 97.62 | |
| 2il1_A | 192 | RAB12; G-protein, GDP, GTPase, predicted, structur | 97.61 | |
| 3clv_A | 208 | RAB5 protein, putative; malaria, GTPase, structura | 97.6 | |
| 3tkl_A | 196 | RAS-related protein RAB-1A; vesicle trafficking, p | 97.6 | |
| 3q85_A | 169 | GTP-binding protein REM 2; G-domain, CAV2 beta, si | 97.59 | |
| 1fzq_A | 181 | ADP-ribosylation factor-like protein 3; protein-GD | 97.59 | |
| 2gf9_A | 189 | RAS-related protein RAB-3D; G-protein, structural | 97.58 | |
| 2bov_A | 206 | RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, | 97.58 | |
| 1x3s_A | 195 | RAS-related protein RAB-18; GTPase, GNP, structura | 97.58 | |
| 2fn4_A | 181 | P23, RAS-related protein R-RAS; GDP/GTP binding, G | 97.57 | |
| 3m6a_A | 543 | ATP-dependent protease LA 1; alpha, beta, ATP-bind | 97.57 | |
| 2bme_A | 186 | RAB4A, RAS-related protein RAB4A; GTP-binding prot | 97.57 | |
| 2bcg_Y | 206 | Protein YP2, GTP-binding protein YPT1; RABGTPase, | 97.56 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 97.56 | |
| 3gee_A | 476 | MNME, tRNA modification GTPase MNME; G protein, cy | 97.55 | |
| 2a9k_A | 187 | RAS-related protein RAL-A; bacterial ADP-ribosyltr | 97.55 | |
| 2efe_B | 181 | Small GTP-binding protein-like; GEF, GTPase, VPS9, | 97.55 | |
| 1svm_A | 377 | Large T antigen; AAA+ fold, viral protein; HET: AT | 97.55 | |
| 1vg8_A | 207 | RAS-related protein RAB-7; GTP-binding protein, pr | 97.55 | |
| 1zu4_A | 320 | FTSY; GTPase, signal recognition particle, SRP, re | 97.54 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 97.54 | |
| 1z06_A | 189 | RAS-related protein RAB-33B; RAB GTPase, RAB33B GT | 97.54 | |
| 3bc1_A | 195 | RAS-related protein RAB-27A; RAB27, GTPase, RAB, s | 97.54 | |
| 1kag_A | 173 | SKI, shikimate kinase I; transferase, structural g | 97.54 | |
| 2dhr_A | 499 | FTSH; AAA+ protein, hexameric Zn metalloprotease, | 97.54 | |
| 4djt_A | 218 | GTP-binding nuclear protein GSP1; structural genom | 97.54 | |
| 2g6b_A | 180 | RAS-related protein RAB-26; G-protein, GTP analogu | 97.53 | |
| 3cph_A | 213 | RAS-related protein SEC4; RAB GTPase, prenylation, | 97.53 | |
| 1ksh_A | 186 | ARF-like protein 2; small GTPase, small GTP-bindin | 97.51 | |
| 3con_A | 190 | GTPase NRAS; structural genomics consortium, SGC, | 97.49 | |
| 1upt_A | 171 | ARL1, ADP-ribosylation factor-like protein 1; hydr | 97.48 | |
| 1ky3_A | 182 | GTP-binding protein YPT7P; vesicular traffic, GTP | 97.47 | |
| 2pez_A | 179 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 97.47 | |
| 2a5j_A | 191 | RAS-related protein RAB-2B; GTPase, signal transdu | 97.47 | |
| 2p5s_A | 199 | RAS and EF-hand domain containing; G-protein, RAB, | 97.47 | |
| 2o52_A | 200 | RAS-related protein RAB-4B; G-protein, GDP, struct | 97.46 | |
| 1moz_A | 183 | ARL1, ADP-ribosylation factor-like protein 1; GTP- | 97.45 | |
| 2lkc_A | 178 | Translation initiation factor IF-2; NMR {Geobacill | 97.44 | |
| 2gf0_A | 199 | GTP-binding protein DI-RAS1; GDP/GTP binding, GTP | 97.44 | |
| 2ged_A | 193 | SR-beta, signal recognition particle receptor beta | 97.43 | |
| 3oes_A | 201 | GTPase rhebl1; small GTPase, structural genomics, | 97.43 | |
| 3kkq_A | 183 | RAS-related protein M-RAS; GTP-binding, GTPase, si | 97.43 | |
| 2qpt_A | 550 | EH domain-containing protein-2; protein-nucleotide | 97.43 | |
| 2fh5_B | 214 | SR-beta, signal recognition particle receptor beta | 97.42 | |
| 4bas_A | 199 | ADP-ribosylation factor, putative (small GTPase, p | 97.41 | |
| 2hxs_A | 178 | RAB-26, RAS-related protein RAB-28; GTPase, signal | 97.41 | |
| 3gj0_A | 221 | GTP-binding nuclear protein RAN; G protein, GDP, a | 97.39 | |
| 1r8s_A | 164 | ADP-ribosylation factor 1; protein transport/excha | 97.39 | |
| 2qor_A | 204 | Guanylate kinase; phosphotransferase, purine metab | 97.39 | |
| 2ew1_A | 201 | RAS-related protein RAB-30; G-protein, GTP analogu | 97.39 | |
| 2h57_A | 190 | ADP-ribosylation factor-like protein 6; GTP, GTPas | 97.38 | |
| 2dy1_A | 665 | Elongation factor G; translocation, GTP complex, s | 97.38 | |
| 1mh1_A | 186 | RAC1; GTP-binding, GTPase, small G-protein, RHO fa | 97.38 | |
| 2zej_A | 184 | Dardarin, leucine-rich repeat kinase 2; parkinson' | 97.34 | |
| 3lda_A | 400 | DNA repair protein RAD51; DNA binding protein, ATP | 97.34 | |
| 2x2e_A | 353 | Dynamin-1; nitration, hydrolase, membrane fission, | 97.34 | |
| 1m7g_A | 211 | Adenylylsulfate kinase; APS kinase, transferase, s | 97.34 | |
| 1zd9_A | 188 | ADP-ribosylation factor-like 10B; transport protei | 97.34 | |
| 3ihw_A | 184 | Centg3; RAS, centaurin, GTPase, structural genomic | 97.33 | |
| 2atv_A | 196 | RERG, RAS-like estrogen-regulated growth inhibitor | 97.33 | |
| 2q3h_A | 201 | RAS homolog gene family, member U; GTPase, structu | 97.32 | |
| 3reg_A | 194 | RHO-like small GTPase; cytoskeleton, nucleotide-bi | 97.32 | |
| 3cpj_B | 223 | GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl | 97.31 | |
| 1wxq_A | 397 | GTP-binding protein; structural genomics, riken st | 97.31 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 97.3 | |
| 2fv8_A | 207 | H6, RHO-related GTP-binding protein RHOB; GDP/GTP | 97.3 | |
| 3geh_A | 462 | MNME, tRNA modification GTPase MNME; G protein, U3 | 97.3 | |
| 2fu5_C | 183 | RAS-related protein RAB-8A; MSS4:RAB8 protein comp | 97.29 | |
| 3dz8_A | 191 | RAS-related protein RAB-3B; GDP, GTPase, structura | 97.29 | |
| 2j1l_A | 214 | RHO-related GTP-binding protein RHOD; GTPase, memb | 97.29 | |
| 2x77_A | 189 | ADP-ribosylation factor; GTP-binding protein, smal | 97.28 | |
| 2qt1_A | 207 | Nicotinamide riboside kinase 1; non-protein kinase | 97.28 | |
| 2iwr_A | 178 | Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi | 97.27 | |
| 2f7s_A | 217 | C25KG, RAS-related protein RAB-27B; G-protein, str | 97.27 | |
| 1m7b_A | 184 | RND3/RHOE small GTP-binding protein; small GTPase, | 97.27 | |
| 2j69_A | 695 | Bacterial dynamin-like protein; FZO, FZL, GTPase, | 97.26 | |
| 2h17_A | 181 | ADP-ribosylation factor-like protein 5A; GDP, GTPa | 97.26 | |
| 1nrj_B | 218 | SR-beta, signal recognition particle receptor beta | 97.23 | |
| 1zj6_A | 187 | ADP-ribosylation factor-like protein 5; ARL, GTP-b | 97.23 | |
| 4gzl_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 97.22 | |
| 2yc2_C | 208 | IFT27, small RAB-related GTPase; transport protein | 97.22 | |
| 2b6h_A | 192 | ADP-ribosylation factor 5; membrane trafficking, G | 97.22 | |
| 3c5c_A | 187 | RAS-like protein 12; GDP, GTPase, structural genom | 97.2 | |
| 2hup_A | 201 | RAS-related protein RAB-43; G-protein, GDP, struct | 97.19 | |
| 3l0i_B | 199 | RAS-related protein RAB-1A; GEF-GDF-RAB complex, G | 97.17 | |
| 1lnz_A | 342 | SPO0B-associated GTP-binding protein; GTPase, OBG, | 97.17 | |
| 2gco_A | 201 | H9, RHO-related GTP-binding protein RHOC; GTPase,s | 97.16 | |
| 1sxj_C | 340 | Activator 1 40 kDa subunit; clamp loader, processi | 97.15 | |
| 1wb9_A | 800 | DNA mismatch repair protein MUTS; DNA-binding, ATP | 97.14 | |
| 1jjv_A | 206 | Dephospho-COA kinase; P-loop nucleotide-binding fo | 97.14 | |
| 1xzp_A | 482 | Probable tRNA modification GTPase TRME; GTP-bindin | 97.13 | |
| 4bas_A | 199 | ADP-ribosylation factor, putative (small GTPase, p | 97.12 | |
| 2h17_A | 181 | ADP-ribosylation factor-like protein 5A; GDP, GTPa | 97.11 | |
| 3llu_A | 196 | RAS-related GTP-binding protein C; structural geno | 97.11 | |
| 3tkl_A | 196 | RAS-related protein RAB-1A; vesicle trafficking, p | 97.11 | |
| 3r7w_A | 307 | Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT | 97.1 | |
| 1gwn_A | 205 | RHO-related GTP-binding protein RHOE; GTPase, inac | 97.1 | |
| 2atx_A | 194 | Small GTP binding protein TC10; GTPase, P-loop, al | 97.1 | |
| 1d7q_A | 143 | Translation initiation factor 1A; OB-fold, beta-ba | 97.08 | |
| 2j0v_A | 212 | RAC-like GTP-binding protein ARAC7; nucleotide-bin | 97.07 | |
| 1jt8_A | 102 | EIF-1A, probable translation initiation factor 1A; | 97.07 | |
| 2g6b_A | 180 | RAS-related protein RAB-26; G-protein, GTP analogu | 97.03 | |
| 2yvu_A | 186 | Probable adenylyl-sulfate kinase; transferase, str | 97.03 | |
| 1w1w_A | 430 | Structural maintenance of chromosome 1; cohesin, c | 97.02 | |
| 2if2_A | 204 | Dephospho-COA kinase; alpha-beta protein, structur | 97.02 | |
| 1zj6_A | 187 | ADP-ribosylation factor-like protein 5; ARL, GTP-b | 97.01 | |
| 4eaq_A | 229 | DTMP kinase, thymidylate kinase; structural genomi | 97.0 | |
| 3q3j_B | 214 | RHO-related GTP-binding protein RHO6; RAS-binding | 96.99 | |
| 2dgy_A | 111 | MGC11102 protein; EIF-1A, structural genomics, NPP | 96.99 | |
| 1upt_A | 171 | ARL1, ADP-ribosylation factor-like protein 1; hydr | 96.99 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 96.96 | |
| 2gf9_A | 189 | RAS-related protein RAB-3D; G-protein, structural | 96.96 | |
| 3kb2_A | 173 | SPBC2 prophage-derived uncharacterized protein YOR | 96.94 | |
| 1ex7_A | 186 | Guanylate kinase; substrate-induced FIT, domain mo | 96.92 | |
| 3q5d_A | 447 | Atlastin-1; G protein, GTPase, GDP/GTP binding, hy | 96.91 | |
| 1qhx_A | 178 | CPT, protein (chloramphenicol phosphotransferase); | 96.91 | |
| 1j8m_F | 297 | SRP54, signal recognition 54 kDa protein; signalin | 96.91 | |
| 3cm0_A | 186 | Adenylate kinase; ATP-binding, cytoplasm, nucleoti | 96.9 | |
| 3qq5_A | 423 | Small GTP-binding protein; hydrogenase, H-cluster, | 96.9 | |
| 2j0v_A | 212 | RAC-like GTP-binding protein ARAC7; nucleotide-bin | 96.9 | |
| 3cph_A | 213 | RAS-related protein SEC4; RAB GTPase, prenylation, | 96.9 | |
| 3c5h_A | 255 | Glucocorticoid receptor DNA-binding factor 1; RAS, | 96.89 | |
| 2x77_A | 189 | ADP-ribosylation factor; GTP-binding protein, smal | 96.89 | |
| 3cbq_A | 195 | GTP-binding protein REM 2; FLJ38964A, structural g | 96.89 | |
| 1kht_A | 192 | Adenylate kinase; phosphotransferase, signaling pr | 96.89 | |
| 1f2t_A | 149 | RAD50 ABC-ATPase; DNA double-strand break repair, | 96.88 | |
| 1np6_A | 174 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.87 | |
| 1y63_A | 184 | LMAJ004144AAA protein; structural genomics, protei | 96.87 | |
| 3t61_A | 202 | Gluconokinase; PSI-biology, structural genomics, p | 96.86 | |
| 2atx_A | 194 | Small GTP binding protein TC10; GTPase, P-loop, al | 96.86 | |
| 2h57_A | 190 | ADP-ribosylation factor-like protein 6; GTP, GTPas | 96.85 | |
| 2cjw_A | 192 | GTP-binding protein GEM; nucleotide-binding, small | 96.85 | |
| 1ksh_A | 186 | ARF-like protein 2; small GTPase, small GTP-bindin | 96.85 | |
| 2o5v_A | 359 | DNA replication and repair protein RECF; ABC ATPas | 96.85 | |
| 2fu5_C | 183 | RAS-related protein RAB-8A; MSS4:RAB8 protein comp | 96.85 | |
| 2aka_B | 299 | Dynamin-1; fusion protein, GTPase domain, myosin, | 96.84 | |
| 2dr3_A | 247 | UPF0273 protein PH0284; RECA superfamily ATPase, h | 96.84 | |
| 3lw7_A | 179 | Adenylate kinase related protein (ADKA-like); AMP, | 96.83 | |
| 3o47_A | 329 | ADP-ribosylation factor GTPase-activating protein | 96.83 | |
| 3ice_A | 422 | Transcription termination factor RHO; transcriptio | 96.82 | |
| 2fg5_A | 192 | RAB-22B, RAS-related protein RAB-31; G-protein, GT | 96.81 | |
| 2efe_B | 181 | Small GTP-binding protein-like; GEF, GTPase, VPS9, | 96.8 | |
| 1z08_A | 170 | RAS-related protein RAB-21; RAB GTPase, vesicular | 96.78 | |
| 3t1o_A | 198 | Gliding protein MGLA; G domain containing protein, | 96.77 | |
| 3bc1_A | 195 | RAS-related protein RAB-27A; RAB27, GTPase, RAB, s | 96.77 | |
| 3q72_A | 166 | GTP-binding protein RAD; G-domain, CAV2 beta, sign | 96.76 | |
| 2y8e_A | 179 | RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti | 96.76 | |
| 3tw8_B | 181 | RAS-related protein RAB-35; longin domain, RAB GTP | 96.76 | |
| 2ffh_A | 425 | Protein (FFH); SRP54, signal recognition particle, | 96.72 | |
| 2rhm_A | 193 | Putative kinase; P-loop containing nucleoside trip | 96.71 | |
| 1z2a_A | 168 | RAS-related protein RAB-23; RAB GTPase, vesicular | 96.71 | |
| 3t1o_A | 198 | Gliding protein MGLA; G domain containing protein, | 96.7 | |
| 2v54_A | 204 | DTMP kinase, thymidylate kinase; nucleotide biosyn | 96.7 | |
| 1z0f_A | 179 | RAB14, member RAS oncogene family; RAB GTPase, ves | 96.7 | |
| 2q3h_A | 201 | RAS homolog gene family, member U; GTPase, structu | 96.7 | |
| 1r2q_A | 170 | RAS-related protein RAB-5A; GTPase, GNP, atomic re | 96.69 | |
| 1r8s_A | 164 | ADP-ribosylation factor 1; protein transport/excha | 96.68 | |
| 2nzj_A | 175 | GTP-binding protein REM 1; GDP/GTP binding, GTP hy | 96.68 | |
| 2jaq_A | 205 | Deoxyguanosine kinase; transferase, deoxyribonucle | 96.67 | |
| 1moz_A | 183 | ARL1, ADP-ribosylation factor-like protein 1; GTP- | 96.67 | |
| 1zbd_A | 203 | Rabphilin-3A; G protein, effector, RABCDR, synapti | 96.65 | |
| 1g16_A | 170 | RAS-related protein SEC4; G protein RAB, signaling | 96.65 | |
| 2g3y_A | 211 | GTP-binding protein GEM; small GTPase, GDP, inacti | 96.63 | |
| 2bcg_Y | 206 | Protein YP2, GTP-binding protein YPT1; RABGTPase, | 96.63 | |
| 2plr_A | 213 | DTMP kinase, probable thymidylate kinase; TMP-bind | 96.63 | |
| 3bwd_D | 182 | RAC-like GTP-binding protein ARAC6; G domain, cyto | 96.62 | |
| 1ly1_A | 181 | Polynucleotide kinase; PNK, phosphatase, transfera | 96.62 | |
| 2gco_A | 201 | H9, RHO-related GTP-binding protein RHOC; GTPase,s | 96.61 | |
| 2a5j_A | 191 | RAS-related protein RAB-2B; GTPase, signal transdu | 96.6 | |
| 3trf_A | 185 | Shikimate kinase, SK; amino acid biosynthesis, tra | 96.6 | |
| 2wwf_A | 212 | Thymidilate kinase, putative; transferase, malaria | 96.6 | |
| 2lkc_A | 178 | Translation initiation factor IF-2; NMR {Geobacill | 96.58 | |
| 2b6h_A | 192 | ADP-ribosylation factor 5; membrane trafficking, G | 96.58 | |
| 2dby_A | 368 | GTP-binding protein; GDP, structural genomics, NPP | 96.58 | |
| 3sjy_A | 403 | Translation initiation factor 2 subunit gamma; zin | 96.57 | |
| 1u8z_A | 168 | RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH | 96.56 | |
| 2c95_A | 196 | Adenylate kinase 1; transferase, AP4A, nucleotide | 96.56 | |
| 3iij_A | 180 | Coilin-interacting nuclear ATPase protein; alpha a | 96.56 | |
| 3con_A | 190 | GTPase NRAS; structural genomics consortium, SGC, | 96.56 | |
| 3bwd_D | 182 | RAC-like GTP-binding protein ARAC6; G domain, cyto | 96.55 | |
| 1nks_A | 194 | Adenylate kinase; thermophilic, transferase; HET: | 96.55 | |
| 1nn5_A | 215 | Similar to deoxythymidylate kinase (thymidylate K; | 96.55 | |
| 2wkq_A | 332 | NPH1-1, RAS-related C3 botulinum toxin substrate 1 | 96.55 | |
| 1gtv_A | 214 | TMK, thymidylate kinase; transferase, transferase | 96.54 | |
| 2a9k_A | 187 | RAS-related protein RAL-A; bacterial ADP-ribosyltr | 96.52 | |
| 3oes_A | 201 | GTPase rhebl1; small GTPase, structural genomics, | 96.52 | |
| 1z0j_A | 170 | RAB-22, RAS-related protein RAB-22A; RAB GTPase, R | 96.52 | |
| 2wsm_A | 221 | Hydrogenase expression/formation protein (HYPB); m | 96.51 | |
| 3j2k_7 | 439 | ERF3, eukaryotic polypeptide chain release factor | 96.5 | |
| 2yc2_C | 208 | IFT27, small RAB-related GTPase; transport protein | 96.5 | |
| 3q85_A | 169 | GTP-binding protein REM 2; G-domain, CAV2 beta, si | 96.49 | |
| 3lvq_E | 497 | ARF-GAP with SH3 domain, ANK repeat and PH domain | 96.48 | |
| 2ga8_A | 359 | Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn | 96.48 | |
| 3r20_A | 233 | Cytidylate kinase; structural genomics, seattle st | 96.47 | |
| 1vht_A | 218 | Dephospho-COA kinase; structural genomics, transfe | 96.47 | |
| 1c1y_A | 167 | RAS-related protein RAP-1A; GTP-binding proteins, | 96.46 | |
| 3qks_A | 203 | DNA double-strand break repair RAD50 ATPase; RECA- | 96.46 | |
| 1zd9_A | 188 | ADP-ribosylation factor-like 10B; transport protei | 96.46 | |
| 1tev_A | 196 | UMP-CMP kinase; ploop, NMP binding region, LID reg | 96.42 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 96.41 | |
| 4dkx_A | 216 | RAS-related protein RAB-6A; GTP binding fold, memb | 96.41 | |
| 1ky3_A | 182 | GTP-binding protein YPT7P; vesicular traffic, GTP | 96.41 | |
| 2oil_A | 193 | CATX-8, RAS-related protein RAB-25; G-protein, GDP | 96.41 | |
| 3tr5_A | 528 | RF-3, peptide chain release factor 3; protein synt | 96.4 | |
| 1via_A | 175 | Shikimate kinase; structural genomics, transferase | 96.4 | |
| 3cpj_B | 223 | GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl | 96.4 | |
| 1ek0_A | 170 | Protein (GTP-binding protein YPT51); vesicular tra | 96.39 | |
| 2elf_A | 370 | Protein translation elongation factor 1A; tRNA, py | 96.38 | |
| 1uf9_A | 203 | TT1252 protein; P-loop, nucleotide binding domain, | 96.38 | |
| 1q3t_A | 236 | Cytidylate kinase; nucleotide monophosphate kinase | 96.37 | |
| 2ce2_X | 166 | GTPase HRAS; signaling protein, guanine nucleotide | 96.36 | |
| 3izq_1 | 611 | HBS1P, elongation factor 1 alpha-like protein; NO- | 96.36 | |
| 1gvn_B | 287 | Zeta; postsegregational killing system, plasmid; 1 | 96.35 | |
| 2hxs_A | 178 | RAB-26, RAS-related protein RAB-28; GTPase, signal | 96.34 | |
| 3kkq_A | 183 | RAS-related protein M-RAS; GTP-binding, GTPase, si | 96.34 | |
| 2hup_A | 201 | RAS-related protein RAB-43; G-protein, GDP, struct | 96.34 | |
| 3p26_A | 483 | Elongation factor 1 alpha-like protein; GTP/GDP bi | 96.34 | |
| 3reg_A | 194 | RHO-like small GTPase; cytoskeleton, nucleotide-bi | 96.34 | |
| 1kk1_A | 410 | EIF2gamma; initiation of translation; HET: GNP; 1. | 96.33 | |
| 4ad8_A | 517 | DNA repair protein RECN; DNA binding protein, ATPa | 96.33 | |
| 2bwj_A | 199 | Adenylate kinase 5; phosphoryl transfer reaction, | 96.32 | |
| 3q3j_B | 214 | RHO-related GTP-binding protein RHO6; RAS-binding | 96.32 | |
| 1sky_E | 473 | F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alp | 96.32 | |
| 3bos_A | 242 | Putative DNA replication factor; P-loop containing | 96.32 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 96.31 | |
| 2bov_A | 206 | RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, | 96.31 | |
| 1m2o_B | 190 | GTP-binding protein SAR1, GTP binding protein; zin | 96.3 | |
| 1kao_A | 167 | RAP2A; GTP-binding protein, small G protein, GDP, | 96.3 | |
| 2hf9_A | 226 | Probable hydrogenase nickel incorporation protein | 96.29 | |
| 1s0u_A | 408 | EIF-2-gamma, translation initiation factor 2 gamma | 96.29 | |
| 1vg8_A | 207 | RAS-related protein RAB-7; GTP-binding protein, pr | 96.28 | |
| 1mh1_A | 186 | RAC1; GTP-binding, GTPase, small G-protein, RHO fa | 96.28 | |
| 2vli_A | 183 | Antibiotic resistance protein; transferase, tunica | 96.27 | |
| 3fb4_A | 216 | Adenylate kinase; psychrophIle, phosphotransferase | 96.26 | |
| 1zd8_A | 227 | GTP:AMP phosphotransferase mitochondrial; ATP:AMP | 96.26 | |
| 2z0h_A | 197 | DTMP kinase, thymidylate kinase; ATP-binding, nucl | 96.26 | |
| 1jbk_A | 195 | CLPB protein; beta barrel, chaperone; 1.80A {Esche | 96.26 | |
| 1aky_A | 220 | Adenylate kinase; ATP:AMP phosphotransferase, myok | 96.26 | |
| 4djt_A | 218 | GTP-binding nuclear protein GSP1; structural genom | 96.25 | |
| 2bme_A | 186 | RAB4A, RAS-related protein RAB4A; GTP-binding prot | 96.25 | |
| 4dsu_A | 189 | GTPase KRAS, isoform 2B; small G-protein, signalin | 96.25 | |
| 3clv_A | 208 | RAB5 protein, putative; malaria, GTPase, structura | 96.25 | |
| 3dz8_A | 191 | RAS-related protein RAB-3B; GDP, GTPase, structura | 96.24 | |
| 2cdn_A | 201 | Adenylate kinase; phosphoryl transfer, associative | 96.24 | |
| 2p5t_B | 253 | PEZT; postsegregational killing system, phosphoryl | 96.24 | |
| 2ze6_A | 253 | Isopentenyl transferase; crown GALL tumor, cytokin | 96.23 | |
| 4dhe_A | 223 | Probable GTP-binding protein ENGB; melioidosis, RA | 96.21 | |
| 1xjc_A | 169 | MOBB protein homolog; structural genomics, midwest | 96.21 | |
| 1zak_A | 222 | Adenylate kinase; ATP:AMP-phosphotransferase, tran | 96.21 | |
| 4gzl_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 96.2 | |
| 3hr8_A | 356 | Protein RECA; alpha and beta proteins (A/B, A+B), | 96.19 | |
| 3dl0_A | 216 | Adenylate kinase; phosphotransferase, zinc coordin | 96.18 | |
| 2dyk_A | 161 | GTP-binding protein; GTPase, ribosome-binding prot | 96.17 | |
| 3zvr_A | 772 | Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito | 96.17 | |
| 3c5c_A | 187 | RAS-like protein 12; GDP, GTPase, structural genom | 96.17 | |
| 2o52_A | 200 | RAS-related protein RAB-4B; G-protein, GDP, struct | 96.16 | |
| 1d2e_A | 397 | Elongation factor TU (EF-TU); G-protein, beta-barr | 96.16 | |
| 2fv8_A | 207 | H6, RHO-related GTP-binding protein RHOB; GDP/GTP | 96.16 | |
| 2pbr_A | 195 | DTMP kinase, thymidylate kinase; transferase, nucl | 96.15 | |
| 1e6c_A | 173 | Shikimate kinase; phosphoryl transfer, ADP, shikim | 96.14 | |
| 3l0i_B | 199 | RAS-related protein RAB-1A; GEF-GDF-RAB complex, G | 96.12 | |
| 2ew1_A | 201 | RAS-related protein RAB-30; G-protein, GTP analogu | 96.12 | |
| 2erx_A | 172 | GTP-binding protein DI-RAS2; GTP hydrolysis, trans | 96.11 | |
| 4ag6_A | 392 | VIRB4 ATPase, type IV secretory pathway VIRB4 comp | 96.11 | |
| 1zun_B | 434 | Sulfate adenylate transferase, subunit 1/adenylyls | 96.11 |
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-48 Score=370.63 Aligned_cols=278 Identities=34% Similarity=0.583 Sum_probs=222.1
Q ss_pred eeEEEecCCCCceeccCCC--CcEEEEEEcccccccCCCcccCcEEEEceecccCCceEEeeeccccccccccccccccE
Q 020346 2 RVIVQQSEPSRTSDCNDKT--GVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDH 79 (327)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~vGD~V~~~~~~~~~~~~~i~~i~~R~~~l~r~~~anvD~ 79 (327)
.|+|++.+.|+|+|..+++ |.++.|.+||++++++..++|||||.++..+ ++.|+|++++||+|.|.||++||+|+
T Consensus 12 ~g~vi~~~~~~y~v~~~~~~~~~~~~~~~rg~~~~~~~~~~vGD~V~~~~~~--~~~~~i~~i~~R~~~l~R~~~anvD~ 89 (307)
T 1t9h_A 12 EGKIIKALSGFYYVLDESEDSDKVIQCRGRGIFRKNKITPLVGDYVVYQAEN--DKEGYLMEIKERTNELIRPPICNVDQ 89 (307)
T ss_dssp EEEEEEEETTEEEEEECSSSSCEEEEEESCSSCCSCCCCCCBTCEEEEECCT--TSCEEEEEECCCSCEETTTTEECCCE
T ss_pred CeEEEEEECCEEEEEEcCCCCCcEEEEEEcccccccCCCCCCCeEEEEEEcC--CCceEEEEEcchhhhhhHHHHHhCCE
Confidence 4899999988889876532 7789999999999888889999999998643 45799999999999999999999999
Q ss_pred EEEEeecCCCCCChHHHHHHHHHHHhcCCCEEEEeecCCCCcHHH----HHHHHhhhhhcCCceeeccCcchhhHHHHHh
Q 020346 80 LLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEV----LNTWKSRLHTWGYEPLFCSVESKLGLDSLLQ 155 (327)
Q Consensus 80 lliv~~~~~p~~~~~~l~r~L~~a~~~~~~~~ivlnK~Dl~~~~~----~~~~~~~~~~~~~~~~~~s~~~~~~l~~l~~ 155 (327)
+++|+++..|.++...|+|||..|+..++++++|+||+||.++.. ...|...|+.+||+++.+|..+..+++.|..
T Consensus 90 v~~V~~~~~p~~~~~~i~r~L~~~~~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~~~sa~~~~g~~~L~~ 169 (307)
T 1t9h_A 90 AVLVFSAVQPSFSTALLDRFLVLVEANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVYLTSSKDQDSLADIIP 169 (307)
T ss_dssp EEEEEESTTTTCCHHHHHHHHHHHHTTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEEECCHHHHTTCTTTGG
T ss_pred EEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCeEEEEecCCCCCHHHHHh
Confidence 999999999999999999999999999999999999999987644 5678888888999999999877777777655
Q ss_pred hcCCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcceeeEEEEEEEccCCC
Q 020346 156 RLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGG 235 (327)
Q Consensus 156 ~l~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~tt~~i~~v~q~~~~ 235 (327)
..+|++++|+|+||||||||+|+|+| +..|+.|+|.+ ..++|+|+|+...++... .+
T Consensus 170 ~~~G~~~~lvG~sG~GKSTLln~L~g------------~~~~~~G~I~~----------~~~~G~~tt~~~~~~~~~-~g 226 (307)
T 1t9h_A 170 HFQDKTTVFAGQSGVGKSSLLNAISP------------ELGLRTNEISE----------HLGRGKHTTRHVELIHTS-GG 226 (307)
T ss_dssp GGTTSEEEEEESHHHHHHHHHHHHCC-----------------------------------------CCCCCEEEET-TE
T ss_pred hcCCCEEEEECCCCCCHHHHHHHhcc------------cccccccceee----------ecCCCcccccHHHHhhcC-CE
Confidence 56999999999999999999999999 77888888775 112333444433344443 56
Q ss_pred eEEeCcccCCccccccCHhHHhhhhHHHHHhcCccccccccccccccccCCceEEcc-------cHHHHHHHHHHHHHHH
Q 020346 236 YLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG-------DWERYQYYFQLLDEIR 308 (327)
Q Consensus 236 ~i~Dtpg~~~~~l~~~~~~~l~~~~~~~~~~LSgGq~q~~~~~~~~h~~ep~~~v~~-------~~~r~~~~~~ll~e~~ 308 (327)
+++||||+..+.+..++.+.+...|+++... ...|.|.+|.|..||+|.+.. +..|++.|..++.+++
T Consensus 227 ~v~dtpg~~~~~l~~lt~e~l~~~f~~~~~~-----~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~~r~~~y~~lls~~~ 301 (307)
T 1t9h_A 227 LVADTPGFSSLEFTDIEEEELGYTFPDIREK-----SSSCKFRGCLHLKEPKCAVKQAVEDGELKQYRYDHYVEFMTEIK 301 (307)
T ss_dssp EEESSCSCSSCCCTTCCHHHHGGGSHHHHHH-----GGGCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHHHHHHHHHH
T ss_pred EEecCCCccccccccCCHHHHHHHHHHHHHH-----hhhccccCCCCccCHHHHHHHHHHhCCChHHHHHHHHHHHHHHh
Confidence 8889999998777666667777788988666 678999999999999999954 3459999999999986
Q ss_pred H
Q 020346 309 I 309 (327)
Q Consensus 309 ~ 309 (327)
+
T Consensus 302 ~ 302 (307)
T 1t9h_A 302 D 302 (307)
T ss_dssp T
T ss_pred h
Confidence 5
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-46 Score=363.41 Aligned_cols=279 Identities=26% Similarity=0.464 Sum_probs=222.6
Q ss_pred CeeEEEecCCCCceeccCCCCcEEEEEEcccccccCCCcccCcEEEEceecccCCc------eEEeeeccccccccccc-
Q 020346 1 MRVIVQQSEPSRTSDCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRR------GMIENVFQRSTEILDPP- 73 (327)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vGD~V~~~~~~~~~~~------~~i~~i~~R~~~l~r~~- 73 (327)
|.|+|++.+.|+|+|.+. +|..+.|.+||+++ .++|||||.++..+ ++. ++|++|+||+|.|.||.
T Consensus 48 ~~g~Vi~~~~~~~~v~~~-~g~~~~~~~r~~~~----~~~vGD~V~~~~~~--~~~~~~~~~~~I~~i~~R~~~l~R~~~ 120 (358)
T 2rcn_A 48 AEGIVISRFGMHADVESA-DGEVHRCNIRRTIR----SLVTGDRVVWRPGK--AAAEGVNVKGIVEAVHERTSVLTRPDF 120 (358)
T ss_dssp EEEEEEEEETTEEEEEET-TSCEEEEEECTTCC----CCCBTCEEEEECBC---------CCEEEEEECCCSCEEEEC--
T ss_pred ceEEEEEEECCEEEEEeC-CCcEEEEEecCCCC----CCCCCcEEEEEeCC--CccccccccceEeEEeCCcCcccCcch
Confidence 579999999777787654 57789999999885 49999999998643 223 89999999999999963
Q ss_pred -------cccccEEEEEeecCCCCCChHHHHHHHHHHHhcCCCEEEEeecCCCCcHHH---HHHHHhhhhhcCCceeecc
Q 020346 74 -------VANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEV---LNTWKSRLHTWGYEPLFCS 143 (327)
Q Consensus 74 -------~anvD~lliv~~~~~p~~~~~~l~r~L~~a~~~~~~~~ivlnK~Dl~~~~~---~~~~~~~~~~~~~~~~~~s 143 (327)
+||+|++++|.+.. |.++...|+|||+.|+..++++++|+||+||.+++. ...|...|+.+||+++.+|
T Consensus 121 ~~~~~~i~anvD~v~iv~a~~-P~~~~~~i~r~L~~a~~~~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~G~~v~~~S 199 (358)
T 2rcn_A 121 YDGVKPIAANIDQIVIVSAIL-PELSLNIIDRYLVGCETLQVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLMVS 199 (358)
T ss_dssp ---CEEEEECCCEEEEEEEST-TTCCHHHHHHHHHHHHHHTCEEEEEEECGGGCCHHHHHHHHHHHHHHHTTTCCEEECB
T ss_pred hhHHHHHHhcCCEEEEEEeCC-CCCCHHHHHHHHHHHHhcCCCEEEEEECccCCCchhHHHHHHHHHHHHhCCCcEEEEe
Confidence 89999999998764 999999999999999999999999999999998765 5578888989999999999
Q ss_pred CcchhhHHHHHhhcCCCEEEEEcCCCCCHHHHHHHHcCCCCCCCccccccccc-ccccceeec-ceeeccccccCCCcce
Q 020346 144 VESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFE-PILGSKWFE-DQRVGEVSTKSGRGKH 221 (327)
Q Consensus 144 ~~~~~~l~~l~~~l~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~-p~~G~i~~~-g~~v~~~s~~~~~g~~ 221 (327)
..+..++++|++.++|++++|+|+||||||||+|+|+| +.. |+.|+|.++ |.. +|
T Consensus 200 a~~~~gl~~L~~~~~G~~~~lvG~sG~GKSTLln~L~g------------~~~~~~~G~I~~~~G~g-----------~~ 256 (358)
T 2rcn_A 200 SHTQDGLKPLEEALTGRISIFAGQSGVGKSSLLNALLG------------LQNEILTNDVSNVSGLG-----------QH 256 (358)
T ss_dssp TTTTBTHHHHHHHHTTSEEEEECCTTSSHHHHHHHHHC------------CSSCCCCC----------------------
T ss_pred cCCCcCHHHHHHhcCCCEEEEECCCCccHHHHHHHHhc------------cccccccCCccccCCCC-----------cc
Confidence 99999999999999999999999999999999999999 777 999998765 432 23
Q ss_pred ee--EEEEEEEccCCCeEEeCcccCCccccccCHhHHhhhhHHHHHhcCccccccccccccccccCCceEEcc-------
Q 020346 222 TT--RHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG------- 292 (327)
Q Consensus 222 tt--~~i~~v~q~~~~~i~Dtpg~~~~~l~~~~~~~l~~~~~~~~~~LSgGq~q~~~~~~~~h~~ep~~~v~~------- 292 (327)
++ ..+++++| +.+++|+|++....+..+...++...++++.+. ...|.|.+|.|.++|||.+..
T Consensus 257 tt~~~~i~~v~q--~~~l~dtpgv~e~~l~~l~~~e~~~~~~e~l~~-----~gl~~f~~~~~~~lSG~~~r~ala~gli 329 (358)
T 2rcn_A 257 TTTAARLYHFPH--GGDVIDSPGVREFGLWHLEPEQITQGFVEFHDY-----LGHCKYRDCKHDADPGCAIREAVENGAI 329 (358)
T ss_dssp --CCCEEEECTT--SCEEEECHHHHTCCCCCCCHHHHHHTSGGGGGG-----TTCSSSTTCCSSSCTTCHHHHHHHHTSS
T ss_pred ceEEEEEEEECC--CCEecCcccHHHhhhcCCCHHHHHHHHHHHHHH-----cCCchhcCCCcccCCHHHHHHHHHhcCC
Confidence 33 34566665 468899999998877777777778888888666 567999999999999999843
Q ss_pred cHHHHHHHHHHHHHHHHhHHHhhhhhc
Q 020346 293 DWERYQYYFQLLDEIRIREEFQLRTFG 319 (327)
Q Consensus 293 ~~~r~~~~~~ll~e~~~~~~~~~~~~~ 319 (327)
++.||++|+++++|+.++. +.|++.
T Consensus 330 ~~~R~~~y~~l~~e~~~~~--~~~~~~ 354 (358)
T 2rcn_A 330 AETRFENYHRILESMAQVK--TRKNFS 354 (358)
T ss_dssp CHHHHHHHHHHHHHHC-----------
T ss_pred CHHHHHHHHHHHHHHHhhH--hhccCC
Confidence 5679999999999986532 345443
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-41 Score=321.07 Aligned_cols=273 Identities=30% Similarity=0.511 Sum_probs=219.8
Q ss_pred CeeEEEecCCCCc--eeccCCCCcEEEEEEcccccccCCCcccCcEEEEceecccCCceEEeeecccccccccccccccc
Q 020346 1 MRVIVQQSEPSRT--SDCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVD 78 (327)
Q Consensus 1 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~vGD~V~~~~~~~~~~~~~i~~i~~R~~~l~r~~~anvD 78 (327)
|.|+|++.+.|+| +|. .+|.++.|.+||++++.+. ++|||||.++..+ +..|+|+++.+|.+.+.|+.++|+|
T Consensus 7 ~~g~v~~~~~~~~~~~v~--~~~~~~~~~~~~~~~~~~~-~~vGD~V~~~~~~--~~~g~I~~i~er~~~l~r~~~~naD 81 (302)
T 2yv5_A 7 KRGLVVDREAQMIGVYLF--EDGKTYRGIPRGKVLKKTK-IYAGDYVWGEVVD--PNTFAIEEVEERKNLLIRPKVANVD 81 (302)
T ss_dssp EEEEEEEEETTEEEEEET--TTCCEEEEEECSSSTTSSC-CCBTCEEEEEEEE--TTEEEEEEECCCSCEEETTEEESCC
T ss_pred eeEEEEEeeCCeEEEEEe--cCCEEEEEEEcCCcccCCC-CcCceEEEEEEcc--CCeEEEEeeCChHHHHhHHHHHhcC
Confidence 4799999998888 887 3567899999999987656 9999999998643 4579999999999999999999999
Q ss_pred EEEEEeecCCCCCChHHHHHHHHHHHhcCCCEEEEeecCCCCcHHH---HHHHHhhhhhcCCceeeccCcchhhHHHHHh
Q 020346 79 HLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEV---LNTWKSRLHTWGYEPLFCSVESKLGLDSLLQ 155 (327)
Q Consensus 79 ~lliv~~~~~p~~~~~~l~r~L~~a~~~~~~~~ivlnK~Dl~~~~~---~~~~~~~~~~~~~~~~~~s~~~~~~l~~l~~ 155 (327)
++++|+++..|.++...++++|..+...++|+++|+||+||.++.+ ...+...+..++++++.+|+.+..+++.+..
T Consensus 82 ~vliV~d~~~p~~s~~~l~~~l~~~~~~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~g~~~~~~SA~~g~gi~~L~~ 161 (302)
T 2yv5_A 82 RVIIVETLKMPEFNNYLLDNMLVVYEYFKVEPVIVFNKIDLLNEEEKKELERWISIYRDAGYDVLKVSAKTGEGIDELVD 161 (302)
T ss_dssp EEEEEECSTTTTCCHHHHHHHHHHHHHTTCEEEEEECCGGGCCHHHHHHHHHHHHHHHHTTCEEEECCTTTCTTHHHHHH
T ss_pred EEEEEEECCCCCCCHHHHHHHHHHHHhCCCCEEEEEEcccCCCccccHHHHHHHHHHHHCCCeEEEEECCCCCCHHHHHh
Confidence 9999999998988999999999999889999999999999987652 4556666777899999999999999999988
Q ss_pred hcCCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcceeeEEEEEEEccCCC
Q 020346 156 RLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGG 235 (327)
Q Consensus 156 ~l~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~tt~~i~~v~q~~~~ 235 (327)
.+.|++++|+|+||||||||+|+|. .. +|++|+|.+ +.++|+|+|+...++.....+
T Consensus 162 ~l~G~i~~l~G~sG~GKSTLln~l~-~~------------~~~~G~i~~----------~~~~G~~~t~~~~~~~~~~~g 218 (302)
T 2yv5_A 162 YLEGFICILAGPSGVGKSSILSRLT-GE------------ELRTQEVSE----------KTERGRHTTTGVRLIPFGKGS 218 (302)
T ss_dssp HTTTCEEEEECSTTSSHHHHHHHHH-SC------------CCCCSCC-------------------CCCCEEEEEETTTE
T ss_pred hccCcEEEEECCCCCCHHHHHHHHH-Hh------------hCccccccc----------ccCCCCCceeeEEEEEcCCCc
Confidence 8899999999999999999999999 43 577888776 123344455444444443467
Q ss_pred eEEeCcccCCccc-cccCHhHHhhhhHHHHHhcCccccccccccccccccCCceEEcc-------cHHHHHHHHHHHHHH
Q 020346 236 YLADTPGFNQPSL-LKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG-------DWERYQYYFQLLDEI 307 (327)
Q Consensus 236 ~i~Dtpg~~~~~l-~~~~~~~l~~~~~~~~~~LSgGq~q~~~~~~~~h~~ep~~~v~~-------~~~r~~~~~~ll~e~ 307 (327)
+++|+||+..+.+ ..++.+++...|+++... . |.|.+|.|..||+|.+.. +..|++.|..++.++
T Consensus 219 ~v~d~pg~~~~~l~~~lt~e~l~~~f~~~~~~-----~--c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~~ls~~ 291 (302)
T 2yv5_A 219 FVGDTPGFSKVEATMFVKPREVRNYFREFLRY-----Q--CKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYLKIIKVY 291 (302)
T ss_dssp EEESSCCCSSCCGGGTSCGGGGGGGCGGGHHH-----H--HHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHHHHTTCC
T ss_pred EEEECcCcCcCcccccCCHHHHHHHHHHHHHc-----c--CCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 8889999987766 566666776677776444 2 889999999999999854 235888888887765
Q ss_pred H
Q 020346 308 R 308 (327)
Q Consensus 308 ~ 308 (327)
+
T Consensus 292 ~ 292 (302)
T 2yv5_A 292 L 292 (302)
T ss_dssp C
T ss_pred H
Confidence 3
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-34 Score=268.54 Aligned_cols=274 Identities=28% Similarity=0.500 Sum_probs=214.3
Q ss_pred CeeEEEecCCCCceeccCCCCcEEEEEEcccccccCCCcccCcEEEEceecccCCceEEeeeccccccccccccccccEE
Q 020346 1 MRVIVQQSEPSRTSDCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHL 80 (327)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vGD~V~~~~~~~~~~~~~i~~i~~R~~~l~r~~~anvD~l 80 (327)
|+|+|++.+.|+|+|...+++.++.|.++|.|.+....+.|||+|.+.... ++...|.++.+|.+.+.++.++|+|.+
T Consensus 11 ~~g~v~~~~~~~~~v~~~~~~sl~~~~~~~~f~~~~~~pTiGd~~~~~~~~--~~~~~iwD~qer~~~l~~~~~~~ad~v 88 (301)
T 1u0l_A 11 RRGIVVSFHSNMVTVEDEETGERILCKLRGKFRLQNLKIYVGDRVEYTPDE--TGSGVIENVLHRKNLLTKPHVANVDQV 88 (301)
T ss_dssp EEEEEEEEETTEEEEEETTTCCEEEEEECGGGTTTTCCCCTTCEEEEECCC--SSSEEEEEECCCSCEETTTTEESCCEE
T ss_pred eeEEEEEeeCCEEEEEEcCCCcEEEEEEcccccccCCCCCCccEEEEEEcC--CCeEEEEEEccccceeeccccccCCEE
Confidence 489999999888888744336789999999996455679999999876422 346789999999999999999999999
Q ss_pred EEEeecCCCCCChHHHHHHHHHHHhcCCCEEEEeecCCCCcHHH---HHHHHhhhhhcCCceeeccCcchhhHHHHHhhc
Q 020346 81 LLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEV---LNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRL 157 (327)
Q Consensus 81 liv~~~~~p~~~~~~l~r~L~~a~~~~~~~~ivlnK~Dl~~~~~---~~~~~~~~~~~~~~~~~~s~~~~~~l~~l~~~l 157 (327)
++|+++..|.++...+++++..+...+.|+++|+||+||.++.. ...+...+... ++.+.+|+.+..+++.+-..+
T Consensus 89 ilV~D~~~~~~s~~~l~~~l~~~~~~~~piilv~NK~DL~~~~~v~~~~~~~~~~~~~-~~~~~~SAktg~gv~~lf~~l 167 (301)
T 1u0l_A 89 ILVVTVKMPETSTYIIDKFLVLAEKNELETVMVINKMDLYDEDDLRKVRELEEIYSGL-YPIVKTSAKTGMGIEELKEYL 167 (301)
T ss_dssp EEEECSSTTCCCHHHHHHHHHHHHHTTCEEEEEECCGGGCCHHHHHHHHHHHHHHTTT-SCEEECCTTTCTTHHHHHHHH
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEEEeHHHcCCchhHHHHHHHHHHHhhh-CcEEEEECCCCcCHHHHHHHh
Confidence 99999998887788899999888878899999999999987654 33444445444 788999999999999987778
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceee---cceeeccccccCCCcceeeEEEEEEEccCC
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWF---EDQRVGEVSTKSGRGKHTTRHVSLLPLSGG 234 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~---~g~~v~~~s~~~~~g~~tt~~i~~v~q~~~ 234 (327)
.|++++|+||||||||||||+|+| +..|++|+|.+ +|.++...+ .++.....
T Consensus 168 ~geiv~l~G~sG~GKSTll~~l~g------------~~~~~~G~i~~~~~~g~~~t~~~-------------~~~~~~~~ 222 (301)
T 1u0l_A 168 KGKISTMAGLSGVGKSSLLNAINP------------GLKLRVSEVSEKLQRGRHTTTTA-------------QLLKFDFG 222 (301)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHST------------TCCCC-------------CCCSC-------------CEEECTTS
T ss_pred cCCeEEEECCCCCcHHHHHHHhcc------------cccccccceecccCCCCCceeee-------------EEEEcCCC
Confidence 999999999999999999999999 88999999998 776654322 12233335
Q ss_pred CeEEeCcccCCccccccCHhHHhhhhHHHHHhcCccccccccccccccccCCceEEcc-------cHHHHHHHHHHHHHH
Q 020346 235 GYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG-------DWERYQYYFQLLDEI 307 (327)
Q Consensus 235 ~~i~Dtpg~~~~~l~~~~~~~l~~~~~~~~~~LSgGq~q~~~~~~~~h~~ep~~~v~~-------~~~r~~~~~~ll~e~ 307 (327)
++++|+|++....+..++..++...||++ +. +.|+|..|.|..||+|.+.. +..|++.|...+.|+
T Consensus 223 g~v~q~p~~~~~~~~~~~~~~~~~l~~~~----~~---~n~~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~~lse~ 295 (301)
T 1u0l_A 223 GYVVDTPGFANLEINDIEPEELKHYFKEF----GD---KQCFFSDCNHVDEPECGVKEAVENGEIAESRYENYVKMFYEL 295 (301)
T ss_dssp CEEESSCSSTTCCCCSSCHHHHGGGSTTS----SS---CCCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHHHHHHHHH
T ss_pred CEEEECcCCCccCCCcCCHHHHHHHHHhc----cc---ccCcCCCCcCCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 67888999988877777778888888874 43 67889889999999999843 347999999999888
Q ss_pred HH
Q 020346 308 RI 309 (327)
Q Consensus 308 ~~ 309 (327)
.+
T Consensus 296 ~~ 297 (301)
T 1u0l_A 296 LG 297 (301)
T ss_dssp HC
T ss_pred HH
Confidence 54
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=99.86 E-value=5.8e-24 Score=205.01 Aligned_cols=141 Identities=17% Similarity=0.205 Sum_probs=104.3
Q ss_pred cCCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccc
Q 020346 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (327)
Q Consensus 135 ~~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s 213 (327)
+.++.+.++|++..+++++++.+ +|++++|+||||||||||+|+|+| +++|++|+|+++|+++...+
T Consensus 5 l~i~~ls~~y~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaG------------l~~p~~G~I~i~G~~i~~~~ 72 (359)
T 3fvq_A 5 LHIGHLSKSFQNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAG------------FEQPDSGEISLSGKTIFSKN 72 (359)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHT------------SSCCSEEEEEETTEEEESSS
T ss_pred EEEEeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhc------------CCCCCCcEEEECCEECcccc
Confidence 34577889998888999999998 899999999999999999999999 99999999999999984322
Q ss_pred ccCCCcceeeEEEEEEEccCC----CeEEeCcccCCccc---------------cccCHhHHhhhhHHHHHhcCcccccc
Q 020346 214 TKSGRGKHTTRHVSLLPLSGG----GYLADTPGFNQPSL---------------LKVTKQSLAQTFPEIKEMLKANEPAK 274 (327)
Q Consensus 214 ~~~~~g~~tt~~i~~v~q~~~----~~i~Dtpg~~~~~l---------------~~~~~~~l~~~~~~~~~~LSgGq~q~ 274 (327)
... ....+.++|+||++. .++.|+..+..... +.+.+.++.+..+ ..|||||+||
T Consensus 73 ~~~---~~~~r~ig~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~---~~LSGGq~QR 146 (359)
T 3fvq_A 73 TNL---PVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYP---HELSGGQQQR 146 (359)
T ss_dssp CBC---CGGGSCCEEECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCG---GGSCHHHHHH
T ss_pred ccc---chhhCCEEEEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCCh---hhCCHHHHHH
Confidence 110 113467999999753 34445544432110 0111111222222 2399999999
Q ss_pred ccccccccccCCceEEcccH
Q 020346 275 CSFNNCLHLGEPGCVVKGDW 294 (327)
Q Consensus 275 ~~~~~~~h~~ep~~~v~~~~ 294 (327)
+++++++ +.+|.++|+|+|
T Consensus 147 ValArAL-~~~P~lLLLDEP 165 (359)
T 3fvq_A 147 AALARAL-APDPELILLDEP 165 (359)
T ss_dssp HHHHHHH-TTCCSEEEEEST
T ss_pred HHHHHHH-HcCCCEEEEeCC
Confidence 9999999 999999999966
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A | Back alignment and structure |
|---|
Probab=99.86 E-value=9.3e-24 Score=204.99 Aligned_cols=152 Identities=15% Similarity=0.175 Sum_probs=112.3
Q ss_pred cCCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccc
Q 020346 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (327)
Q Consensus 135 ~~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s 213 (327)
+.++.+.++|++..+++++++.+ +|++++|+||||||||||+|+|+| +++|++|+|+++|+++...+
T Consensus 4 l~~~~l~~~yg~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaG------------l~~p~~G~I~i~G~~~~~~~ 71 (381)
T 3rlf_A 4 VQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAG------------LETITSGDLFIGEKRMNDTP 71 (381)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHT------------SSCCSEEEEEETTEECTTCC
T ss_pred EEEEeEEEEECCEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHc------------CCCCCCeEEEECCEECCCCC
Confidence 34577889998888999999998 899999999999999999999999 99999999999999997765
Q ss_pred ccCCCcceeeEEEEEEEccCCC----eEEeCcccCCcc---------------ccccCHhHHhhhhHHHHHhcCcccccc
Q 020346 214 TKSGRGKHTTRHVSLLPLSGGG----YLADTPGFNQPS---------------LLKVTKQSLAQTFPEIKEMLKANEPAK 274 (327)
Q Consensus 214 ~~~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~~---------------l~~~~~~~l~~~~~~~~~~LSgGq~q~ 274 (327)
.. .+.++|++|++.. ++.|+..+.... ++.+.+..+.+..| ..|||||+||
T Consensus 72 ~~-------~r~ig~VfQ~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p---~~LSGGqrQR 141 (381)
T 3rlf_A 72 PA-------ERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKP---KALSGGQRQR 141 (381)
T ss_dssp GG-------GSCEEEECTTCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCG---GGSCHHHHHH
T ss_pred HH-------HCCEEEEecCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCh---hHCCHHHHHH
Confidence 42 3569999998532 344443332110 01111112222222 2399999999
Q ss_pred ccccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 275 CSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 275 ~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
+++++++ +.+|+++|+|+| ......+.+++++..
T Consensus 142 VaiArAL-~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~ 181 (381)
T 3rlf_A 142 VAIGRTL-VAEPSVFLLDEPLSNLDAALRVQMRIEISRLHK 181 (381)
T ss_dssp HHHHHHH-HHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHH
Confidence 9999999 999999999965 344555555666543
|
| >4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.3e-23 Score=195.09 Aligned_cols=154 Identities=17% Similarity=0.245 Sum_probs=111.6
Q ss_pred CCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccc
Q 020346 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (327)
Q Consensus 136 ~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~ 214 (327)
.++.++++|++..+++++++.+ +|++++|+||||||||||+|+|+| +++|++|+|+++|+++...+.
T Consensus 13 ~~~~l~~~~~~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G------------l~~p~~G~I~~~g~~~~~~~~ 80 (266)
T 4g1u_C 13 EASHLHYHVQQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTG------------YLSPSHGECHLLGQNLNSWQP 80 (266)
T ss_dssp EEEEEEEEETTEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTS------------SSCCSSCEEEETTEETTTSCH
T ss_pred EEEeEEEEeCCeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhc------------CCCCCCcEEEECCEECCcCCH
Confidence 4567888888888999999998 999999999999999999999999 999999999999999876654
Q ss_pred cCCCcceeeEEEEEEEccCCC----eEEeCcccCCccc-------------cccCHhHHhhhhHHHHHhcCccccccccc
Q 020346 215 KSGRGKHTTRHVSLLPLSGGG----YLADTPGFNQPSL-------------LKVTKQSLAQTFPEIKEMLKANEPAKCSF 277 (327)
Q Consensus 215 ~~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~~l-------------~~~~~~~l~~~~~~~~~~LSgGq~q~~~~ 277 (327)
.. ..+.+++++|.+.. ++.++..+..... +.+...++.+.. ...|||||+||+++
T Consensus 81 ~~-----~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---~~~LSgGq~QRv~i 152 (266)
T 4g1u_C 81 KA-----LARTRAVMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQRD---YRVLSGGEQQRVQL 152 (266)
T ss_dssp HH-----HHHHEEEECSCCCCCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCSTTTTSB---GGGCCHHHHHHHHH
T ss_pred HH-----HhheEEEEecCCccCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChhHhcCC---cccCCHHHHHHHHH
Confidence 32 34568999997532 2223222211100 000111111111 23499999999999
Q ss_pred ccccccc------CCceEEcccH------HHHHHHHHHHHHHHHh
Q 020346 278 NNCLHLG------EPGCVVKGDW------ERYQYYFQLLDEIRIR 310 (327)
Q Consensus 278 ~~~~h~~------ep~~~v~~~~------~r~~~~~~ll~e~~~~ 310 (327)
++++ +. +|+++|+||| .......++++++...
T Consensus 153 AraL-~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~ 196 (266)
T 4g1u_C 153 ARVL-AQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQ 196 (266)
T ss_dssp HHHH-HHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHH-hcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHc
Confidence 9999 87 9999999954 4556666777777544
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=1.7e-23 Score=197.93 Aligned_cols=155 Identities=19% Similarity=0.282 Sum_probs=112.0
Q ss_pred cCCceeeccCc-chhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccc
Q 020346 135 WGYEPLFCSVE-SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV 212 (327)
Q Consensus 135 ~~~~~~~~s~~-~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~ 212 (327)
+.++.++++|. ...+|+++++.+ +|++++|+||||||||||+++|+| +++|++|+|.++|.++...
T Consensus 54 i~~~~vs~~y~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g------------l~~p~~G~I~i~G~~i~~~ 121 (306)
T 3nh6_A 54 IEFENVHFSYADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFR------------FYDISSGCIRIDGQDISQV 121 (306)
T ss_dssp EEEEEEEEESSTTCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTT------------SSCCSEEEEEETTEETTSB
T ss_pred EEEEEEEEEcCCCCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHc------------CCCCCCcEEEECCEEcccC
Confidence 56788999995 467899999998 899999999999999999999999 9999999999999999877
Q ss_pred cccCCCcceeeEEEEEEEccCCC---eEEeCcccCCccccccCHh---HHhhhhHHHH--------------HhcCcccc
Q 020346 213 STKSGRGKHTTRHVSLLPLSGGG---YLADTPGFNQPSLLKVTKQ---SLAQTFPEIK--------------EMLKANEP 272 (327)
Q Consensus 213 s~~~~~g~~tt~~i~~v~q~~~~---~i~Dtpg~~~~~l~~~~~~---~l~~~~~~~~--------------~~LSgGq~ 272 (327)
+... .++.++|+||++.. ++.|+..+.......-... ......+.+. ..|||||+
T Consensus 122 ~~~~-----~r~~i~~v~Q~~~lf~~Tv~eNi~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqr 196 (306)
T 3nh6_A 122 TQAS-----LRSHIGVVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEK 196 (306)
T ss_dssp CHHH-----HHHTEEEECSSCCCCSEEHHHHHHTTSTTCCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHH
T ss_pred CHHH-----HhcceEEEecCCccCcccHHHHHHhhcccCCHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHH
Confidence 6443 56789999997532 3344433332211100000 0111111111 24999999
Q ss_pred ccccccccccccCCceEEcccH------HHHHHHHHHHHHH
Q 020346 273 AKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEI 307 (327)
Q Consensus 273 q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~ 307 (327)
||+++|+++ +.+|.++|+|+| .......+++.++
T Consensus 197 QRvaiARAL-~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l 236 (306)
T 3nh6_A 197 QRVAIARTI-LKAPGIILLDEATSALDTSNERAIQASLAKV 236 (306)
T ss_dssp HHHHHHHHH-HHCCSEEEEECCSSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HhCCCEEEEECCcccCCHHHHHHHHHHHHHH
Confidence 999999999 999999999955 3444445555555
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A | Back alignment and structure |
|---|
Probab=99.85 E-value=1.1e-23 Score=190.54 Aligned_cols=159 Identities=16% Similarity=0.106 Sum_probs=109.1
Q ss_pred CCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccc
Q 020346 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (327)
Q Consensus 136 ~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~ 214 (327)
.++.+.++|++..+++++++.+ +|++++|+||||||||||+|+|+| +++|++|+|.++|.++...+.
T Consensus 6 ~~~~l~~~y~~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~G------------l~~p~~G~i~~~g~~~~~~~~ 73 (224)
T 2pcj_A 6 RAENIKKVIRGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGL------------LDAPTEGKVFLEGKEVDYTNE 73 (224)
T ss_dssp EEEEEEEEETTEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTT------------SSCCSEEEEEETTEECCSSCH
T ss_pred EEEeEEEEECCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhc------------CCCCCceEEEECCEECCCCCH
Confidence 4567888888778999999998 999999999999999999999999 999999999999998865432
Q ss_pred cCCCccee-eEEEEEEEccCCC----eEEeCcccCCccccccCHh----HHhhhhHH---------HHHhcCcccccccc
Q 020346 215 KSGRGKHT-TRHVSLLPLSGGG----YLADTPGFNQPSLLKVTKQ----SLAQTFPE---------IKEMLKANEPAKCS 276 (327)
Q Consensus 215 ~~~~g~~t-t~~i~~v~q~~~~----~i~Dtpg~~~~~l~~~~~~----~l~~~~~~---------~~~~LSgGq~q~~~ 276 (327)
... ... .+.++|+||++.. ++.|+..+... ....... ........ ....|||||+||++
T Consensus 74 ~~~--~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ 150 (224)
T 2pcj_A 74 KEL--SLLRNRKLGFVFQFHYLIPELTALENVIVPML-KMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVA 150 (224)
T ss_dssp HHH--HHHHHHHEEEECSSCCCCTTSCHHHHHHHHHH-HTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHH
T ss_pred HHH--HHHHhCcEEEEecCcccCCCCCHHHHHHhHHH-HcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHH
Confidence 110 001 2569999997532 22222211100 0000000 01111110 11249999999999
Q ss_pred ccccccccCCceEEcccH------HHHHHHHHHHHHHHHh
Q 020346 277 FNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRIR 310 (327)
Q Consensus 277 ~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~~ 310 (327)
+++++ +.+|.++++||| ...+...++++++.+.
T Consensus 151 laral-~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~ 189 (224)
T 2pcj_A 151 IARAL-ANEPILLFADEPTGNLDSANTKRVMDIFLKINEG 189 (224)
T ss_dssp HHHHT-TTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHH-HcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC
Confidence 99999 999999999965 4556666777776543
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.1e-22 Score=189.77 Aligned_cols=155 Identities=17% Similarity=0.236 Sum_probs=107.8
Q ss_pred cCCceeeccCcch-hhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccc
Q 020346 135 WGYEPLFCSVESK-LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV 212 (327)
Q Consensus 135 ~~~~~~~~s~~~~-~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~ 212 (327)
+.++.++++|++. .+++++++.+ +|++++|+||||||||||+|+|+| +++|++|+|+++|+++...
T Consensus 8 l~i~~ls~~y~~~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~G------------l~~p~~G~I~~~G~~i~~~ 75 (275)
T 3gfo_A 8 LKVEELNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNG------------ILKPSSGRILFDNKPIDYS 75 (275)
T ss_dssp EEEEEEEEECTTSCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTT------------SSCCSEEEEEETTEECCCS
T ss_pred EEEEEEEEEECCCCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHc------------CCCCCCeEEEECCEECCcc
Confidence 3457788889654 5999999998 999999999999999999999999 9999999999999988421
Q ss_pred cccCCCcceeeEEEEEEEccCCC-----eEEeCcccCCcc---------------ccccCHhHHhhhhHHHHHhcCcccc
Q 020346 213 STKSGRGKHTTRHVSLLPLSGGG-----YLADTPGFNQPS---------------LLKVTKQSLAQTFPEIKEMLKANEP 272 (327)
Q Consensus 213 s~~~~~g~~tt~~i~~v~q~~~~-----~i~Dtpg~~~~~---------------l~~~~~~~l~~~~~~~~~~LSgGq~ 272 (327)
... ....++.++|+||++.. ++.|+..+.... ++.+...++.+.. ...|||||+
T Consensus 76 ~~~---~~~~~~~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~---~~~LSgGqk 149 (275)
T 3gfo_A 76 RKG---IMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKP---THCLSFGQK 149 (275)
T ss_dssp HHH---HHHHHHSEEEECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSB---GGGSCHHHH
T ss_pred ccc---HHHHhCcEEEEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCC---cccCCHHHH
Confidence 100 01145679999997521 222222111000 0001111111111 123999999
Q ss_pred ccccccccccccCCceEEcccH------HHHHHHHHHHHHHH
Q 020346 273 AKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIR 308 (327)
Q Consensus 273 q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~ 308 (327)
||+++|+++ +.+|+++|+|+| .....+.++++++.
T Consensus 150 QRv~iAraL-~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~ 190 (275)
T 3gfo_A 150 KRVAIAGVL-VMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQ 190 (275)
T ss_dssp HHHHHHHHH-TTCCSEEEEECTTTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HcCCCEEEEECccccCCHHHHHHHHHHHHHHH
Confidence 999999999 999999999955 45566667777775
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=5.1e-23 Score=188.93 Aligned_cols=156 Identities=15% Similarity=0.241 Sum_probs=111.3
Q ss_pred hcCCceeeccC--cchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeec
Q 020346 134 TWGYEPLFCSV--ESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (327)
Q Consensus 134 ~~~~~~~~~s~--~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~ 210 (327)
.+.++.+.++| ++..+++++++.+ +|++++|+||||||||||+++|+| +++|++|+|+++|.++.
T Consensus 7 ~~~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G------------l~~p~~G~I~i~g~~~~ 74 (247)
T 2ff7_A 7 DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQR------------FYIPENGQVLIDGHDLA 74 (247)
T ss_dssp EEEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTT------------SSCCSEEEEEETTEETT
T ss_pred ceeEEEEEEEeCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhc------------CCCCCCcEEEECCEEhh
Confidence 35567888999 3567899999998 999999999999999999999999 99999999999999886
Q ss_pred cccccCCCcceeeEEEEEEEccCCC---eEEeCcccCCccccc---------cCHhHHhhhhH--------HHHHhcCcc
Q 020346 211 EVSTKSGRGKHTTRHVSLLPLSGGG---YLADTPGFNQPSLLK---------VTKQSLAQTFP--------EIKEMLKAN 270 (327)
Q Consensus 211 ~~s~~~~~g~~tt~~i~~v~q~~~~---~i~Dtpg~~~~~l~~---------~~~~~l~~~~~--------~~~~~LSgG 270 (327)
..+... .++.++|+||++.. ++.|+..+....... +...+....+| +....||||
T Consensus 75 ~~~~~~-----~~~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgG 149 (247)
T 2ff7_A 75 LADPNW-----LRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGG 149 (247)
T ss_dssp TSCHHH-----HHHHEEEECSSCCCTTSBHHHHHTTTCTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHH
T ss_pred hCCHHH-----HHhcEEEEeCCCccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHH
Confidence 543221 34579999997532 333443332111000 00011111111 001359999
Q ss_pred ccccccccccccccCCceEEcccH------HHHHHHHHHHHHH
Q 020346 271 EPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEI 307 (327)
Q Consensus 271 q~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~ 307 (327)
|+||+++++++ +.+|.++|+|+| ...+...++++++
T Consensus 150 q~qRv~iAraL-~~~p~lllLDEPts~LD~~~~~~i~~~l~~~ 191 (247)
T 2ff7_A 150 QRQRIAIARAL-VNNPKILIFDEATSALDYESEHVIMRNMHKI 191 (247)
T ss_dssp HHHHHHHHHHH-TTCCSEEEECCCCSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-hcCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 99999999999 999999999954 4556666677666
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* | Back alignment and structure |
|---|
Probab=99.85 E-value=4.8e-23 Score=190.92 Aligned_cols=160 Identities=13% Similarity=0.133 Sum_probs=110.1
Q ss_pred cCCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccc
Q 020346 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (327)
Q Consensus 135 ~~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s 213 (327)
+.++.+.++|++..+++++++.+ +|++++|+||||||||||+|+|+| +++|++|+|+++|.++. .+
T Consensus 25 l~i~~l~~~y~~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~G------------l~~p~~G~I~~~g~~i~-~~ 91 (263)
T 2olj_A 25 IDVHQLKKSFGSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNL------------LEDFDEGEIIIDGINLK-AK 91 (263)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTT------------SSCCSEEEEEETTEESS-ST
T ss_pred EEEEeEEEEECCEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHc------------CCCCCCcEEEECCEECC-Cc
Confidence 45678888998778999999998 999999999999999999999999 99999999999999875 22
Q ss_pred ccCCCcceeeEEEEEEEccCCC----eEEeCcccCCccccccCHh----HHhhhhH---------HHHHhcCcccccccc
Q 020346 214 TKSGRGKHTTRHVSLLPLSGGG----YLADTPGFNQPSLLKVTKQ----SLAQTFP---------EIKEMLKANEPAKCS 276 (327)
Q Consensus 214 ~~~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~~l~~~~~~----~l~~~~~---------~~~~~LSgGq~q~~~ 276 (327)
... ....++.++|+||++.. ++.|+..+........... .+.+... .....|||||+||++
T Consensus 92 ~~~--~~~~~~~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~ 169 (263)
T 2olj_A 92 DTN--LNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVA 169 (263)
T ss_dssp TCC--HHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHH
T ss_pred ccc--HHHHhCcEEEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHH
Confidence 111 01134569999997522 2223322210000001100 0111111 112249999999999
Q ss_pred ccccccccCCceEEcccH------HHHHHHHHHHHHHHHh
Q 020346 277 FNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRIR 310 (327)
Q Consensus 277 ~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~~ 310 (327)
+++++ +.+|.++|+||| ...+...++++++.+.
T Consensus 170 lAraL-~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~ 208 (263)
T 2olj_A 170 IARAL-AMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANE 208 (263)
T ss_dssp HHHHH-TTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHH-HCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhC
Confidence 99999 999999999955 4556666777776543
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=4.5e-23 Score=190.18 Aligned_cols=159 Identities=14% Similarity=0.165 Sum_probs=110.9
Q ss_pred cCCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccc
Q 020346 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (327)
Q Consensus 135 ~~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s 213 (327)
+.++.+.++|++..+++++++.+ +|++++|+||||||||||+|+|+| +++|++|+|.++|.++...+
T Consensus 8 l~i~~l~~~y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~G------------l~~p~~G~i~~~g~~~~~~~ 75 (257)
T 1g6h_A 8 LRTENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITG------------FLKADEGRVYFENKDITNKE 75 (257)
T ss_dssp EEEEEEEEEETTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTT------------SSCCSEEEEEETTEECTTCC
T ss_pred EEEeeeEEEECCEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhC------------CCCCCCcEEEECCEECCCCC
Confidence 34567888888878999999998 999999999999999999999999 99999999999999886543
Q ss_pred ccCCCcceeeEEEEEEEccCC----CeEEeCcccCCcc-ccc-----------cC----HhHHhhhhH---------HHH
Q 020346 214 TKSGRGKHTTRHVSLLPLSGG----GYLADTPGFNQPS-LLK-----------VT----KQSLAQTFP---------EIK 264 (327)
Q Consensus 214 ~~~~~g~~tt~~i~~v~q~~~----~~i~Dtpg~~~~~-l~~-----------~~----~~~l~~~~~---------~~~ 264 (327)
... ..++.++++||++. .++.|+..+.... ... .. .....+... ...
T Consensus 76 ~~~----~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 151 (257)
T 1g6h_A 76 PAE----LYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKA 151 (257)
T ss_dssp HHH----HHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBG
T ss_pred HHH----HHhCCEEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCc
Confidence 211 02456999999752 2333333221100 000 00 001111111 112
Q ss_pred HhcCccccccccccccccccCCceEEcccH------HHHHHHHHHHHHHHHh
Q 020346 265 EMLKANEPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRIR 310 (327)
Q Consensus 265 ~~LSgGq~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~~ 310 (327)
..|||||+||+++++++ +.+|.++|+||| ...+...++++++...
T Consensus 152 ~~LSgGqkQrv~iAraL-~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~ 202 (257)
T 1g6h_A 152 GELSGGQMKLVEIGRAL-MTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAK 202 (257)
T ss_dssp GGSCHHHHHHHHHHHHH-HTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT
T ss_pred hhCCHHHHHHHHHHHHH-HcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHC
Confidence 24999999999999999 999999999965 4666666777776543
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} | Back alignment and structure |
|---|
Probab=99.85 E-value=4.2e-23 Score=198.89 Aligned_cols=152 Identities=16% Similarity=0.257 Sum_probs=110.2
Q ss_pred cCCceeeccC-cchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccc
Q 020346 135 WGYEPLFCSV-ESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV 212 (327)
Q Consensus 135 ~~~~~~~~s~-~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~ 212 (327)
+.++.+.++| ++..+++++++.+ +|++++|+||||||||||+|+|+| +++|++|+|.++|+++...
T Consensus 15 l~~~~l~~~y~g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaG------------l~~p~~G~I~i~g~~i~~~ 82 (355)
T 1z47_A 15 IEFVGVEKIYPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAG------------LERPTKGDVWIGGKRVTDL 82 (355)
T ss_dssp EEEEEEEECCTTSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHT------------SSCCSEEEEEETTEECTTC
T ss_pred EEEEEEEEEEcCCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhC------------CCCCCccEEEECCEECCcC
Confidence 3457788899 7778999999998 899999999999999999999999 9999999999999998654
Q ss_pred cccCCCcceeeEEEEEEEccCC----CeEEeCcccCCcc---------------ccccCHhHHhhhhHHHHHhcCccccc
Q 020346 213 STKSGRGKHTTRHVSLLPLSGG----GYLADTPGFNQPS---------------LLKVTKQSLAQTFPEIKEMLKANEPA 273 (327)
Q Consensus 213 s~~~~~g~~tt~~i~~v~q~~~----~~i~Dtpg~~~~~---------------l~~~~~~~l~~~~~~~~~~LSgGq~q 273 (327)
+. ..+.++|+||++. .++.|+..+.... ++.+.+.++.+..+ ..|||||+|
T Consensus 83 ~~-------~~r~ig~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~---~~LSGGq~Q 152 (355)
T 1z47_A 83 PP-------QKRNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFP---HELSGGQQQ 152 (355)
T ss_dssp CG-------GGSSEEEECGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCG---GGSCHHHHH
T ss_pred Ch-------hhCcEEEEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCc---ccCCHHHHH
Confidence 42 2457999999742 2333443321100 01111111112222 239999999
Q ss_pred cccccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 274 KCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 274 ~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
|+++++++ +.+|.++|+|+| ...+..+.+++++..
T Consensus 153 RvalArAL-~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~ 193 (355)
T 1z47_A 153 RVALARAL-APRPQVLLFDEPFAAIDTQIRRELRTFVRQVHD 193 (355)
T ss_dssp HHHHHHHH-TTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence 99999999 999999999965 344555566666543
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.85 E-value=5.2e-23 Score=198.58 Aligned_cols=151 Identities=15% Similarity=0.228 Sum_probs=110.5
Q ss_pred CCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccc
Q 020346 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (327)
Q Consensus 136 ~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~ 214 (327)
.++.+.++|++..+++++++.+ +|++++|+||||||||||+|+|+| +++|++|+|+++|+++...+.
T Consensus 5 ~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaG------------l~~p~~G~I~i~g~~i~~~~~ 72 (359)
T 2yyz_A 5 RVVNLKKYFGKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAG------------IYKPTSGEIYFDDVLVNDIPP 72 (359)
T ss_dssp EEEEEEEEETTEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHT------------SSCCSEEEEEETTEECTTSCG
T ss_pred EEEEEEEEECCEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHC------------CCCCCccEEEECCEECCCCCh
Confidence 4567888888778999999998 899999999999999999999999 999999999999999876543
Q ss_pred cCCCcceeeEEEEEEEccCC----CeEEeCcccCCcc---------------ccccCHhHHhhhhHHHHHhcCccccccc
Q 020346 215 KSGRGKHTTRHVSLLPLSGG----GYLADTPGFNQPS---------------LLKVTKQSLAQTFPEIKEMLKANEPAKC 275 (327)
Q Consensus 215 ~~~~g~~tt~~i~~v~q~~~----~~i~Dtpg~~~~~---------------l~~~~~~~l~~~~~~~~~~LSgGq~q~~ 275 (327)
..+.++|+||++. .++.|+..+.... ++.+.+.++.+..+ ..|||||+||+
T Consensus 73 -------~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~---~~LSgGq~QRv 142 (359)
T 2yyz_A 73 -------KYREVGMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKP---TQLSGGQQQRV 142 (359)
T ss_dssp -------GGTTEEEECSSCCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCG---GGSCHHHHHHH
T ss_pred -------hhCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCCh---hhCCHHHHHHH
Confidence 2356999999753 2344444332110 01111111222222 23999999999
Q ss_pred cccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 276 SFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 276 ~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
++++++ +.+|.++++|+| ...+..+.+++++..
T Consensus 143 alArAL-~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~ 181 (359)
T 2yyz_A 143 ALARAL-VKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQ 181 (359)
T ss_dssp HHHHHH-TTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HcCCCEEEEECCcccCCHHHHHHHHHHHHHHHH
Confidence 999999 999999999965 344555566666543
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=2.4e-22 Score=194.79 Aligned_cols=152 Identities=16% Similarity=0.232 Sum_probs=109.3
Q ss_pred cCCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccc
Q 020346 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (327)
Q Consensus 135 ~~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s 213 (327)
+.++.+.++|++..+++++++.+ +|++++|+||||||||||+|+|+| +++|++|+|+++|+++...+
T Consensus 12 l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaG------------l~~p~~G~I~i~g~~i~~~~ 79 (372)
T 1v43_A 12 VKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAG------------LEEPTEGRIYFGDRDVTYLP 79 (372)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHT------------SSCCSEEEEEETTEECTTSC
T ss_pred EEEEEEEEEECCEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHc------------CCCCCceEEEECCEECCCCC
Confidence 44677888898778999999998 899999999999999999999999 99999999999999987654
Q ss_pred ccCCCcceeeEEEEEEEccCC----CeEEeCcccCCcc---------------ccccCHhHHhhhhHHHHHhcCcccccc
Q 020346 214 TKSGRGKHTTRHVSLLPLSGG----GYLADTPGFNQPS---------------LLKVTKQSLAQTFPEIKEMLKANEPAK 274 (327)
Q Consensus 214 ~~~~~g~~tt~~i~~v~q~~~----~~i~Dtpg~~~~~---------------l~~~~~~~l~~~~~~~~~~LSgGq~q~ 274 (327)
. ..+.++|+||++. .++.|+..+.... ++.+.+.++.+..+ ..|||||+||
T Consensus 80 ~-------~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~---~~LSGGq~QR 149 (372)
T 1v43_A 80 P-------KDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYP---AQLSGGQRQR 149 (372)
T ss_dssp G-------GGGTEEEEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCT---TTCCSSCHHH
T ss_pred h-------hhCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCCh---hhCCHHHHHH
Confidence 3 2356999999753 2344444332110 00111111112222 2399999999
Q ss_pred ccccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 275 CSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 275 ~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
+++++++ +.+|.++++|+| ...+..+.+++++..
T Consensus 150 valArAL-~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~ 189 (372)
T 1v43_A 150 VAVARAI-VVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQ 189 (372)
T ss_dssp HHHHHHH-TTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHH
Confidence 9999999 999999999965 344555566666543
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C | Back alignment and structure |
|---|
Probab=99.85 E-value=1.9e-23 Score=201.81 Aligned_cols=158 Identities=16% Similarity=0.202 Sum_probs=112.6
Q ss_pred cCCceeeccCcc----hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceee
Q 020346 135 WGYEPLFCSVES----KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRV 209 (327)
Q Consensus 135 ~~~~~~~~s~~~----~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v 209 (327)
+.++.++++|+. ..+++++++.+ +|++++|+||||||||||+|+|+| +++|++|+|+++|+++
T Consensus 25 i~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~G------------L~~p~~G~I~i~G~~i 92 (366)
T 3tui_C 25 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNL------------LERPTEGSVLVDGQEL 92 (366)
T ss_dssp EEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHT------------SSCCSEEEEEETTEEC
T ss_pred EEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhc------------CCCCCceEEEECCEEC
Confidence 446778888853 35899999998 899999999999999999999999 9999999999999998
Q ss_pred ccccccCCCcceeeEEEEEEEccCCC----eEEeCcccCCcc---------------ccccCHhHHhhhhHHHHHhcCcc
Q 020346 210 GEVSTKSGRGKHTTRHVSLLPLSGGG----YLADTPGFNQPS---------------LLKVTKQSLAQTFPEIKEMLKAN 270 (327)
Q Consensus 210 ~~~s~~~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~~---------------l~~~~~~~l~~~~~~~~~~LSgG 270 (327)
...+.... +..++.++|+||++.. ++.|+..+.... ++.+.+.+..+.++ ..||||
T Consensus 93 ~~~~~~~~--~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~---~~LSGG 167 (366)
T 3tui_C 93 TTLSESEL--TKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYP---SNLSGG 167 (366)
T ss_dssp SSCCHHHH--HHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCT---TTSCHH
T ss_pred CcCCHHHH--HHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCCh---hhCCHH
Confidence 77653221 0134579999997632 233332221000 00111111112222 239999
Q ss_pred ccccccccccccccCCceEEcccH------HHHHHHHHHHHHHHHh
Q 020346 271 EPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRIR 310 (327)
Q Consensus 271 q~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~~ 310 (327)
|+||+++|+++ +.+|.++|+|+| .......++++++...
T Consensus 168 qkQRVaIArAL-~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~ 212 (366)
T 3tui_C 168 QKQRVAIARAL-ASNPKVLLCDQATSALDPATTRSILELLKDINRR 212 (366)
T ss_dssp HHHHHHHHHHT-TTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-hcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHh
Confidence 99999999999 999999999954 5666677777777543
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.84 E-value=3.6e-23 Score=199.83 Aligned_cols=151 Identities=18% Similarity=0.273 Sum_probs=109.5
Q ss_pred CCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccc
Q 020346 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (327)
Q Consensus 136 ~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~ 214 (327)
.++.+.++|++..+++++++.+ +|++++|+||||||||||+|+|+| +++|++|+|+++|+++...+.
T Consensus 5 ~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaG------------l~~p~~G~I~i~g~~i~~~~~ 72 (362)
T 2it1_A 5 KLENIVKKFGNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAG------------IYKPTSGKIYFDEKDVTELPP 72 (362)
T ss_dssp EEEEEEEESSSSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHT------------SSCCSEEEEEETTEECTTSCG
T ss_pred EEEeEEEEECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhc------------CCCCCceEEEECCEECCcCCH
Confidence 4567888898778999999998 899999999999999999999999 999999999999999876543
Q ss_pred cCCCcceeeEEEEEEEccCC----CeEEeCcccCCcc---------------ccccCHhHHhhhhHHHHHhcCccccccc
Q 020346 215 KSGRGKHTTRHVSLLPLSGG----GYLADTPGFNQPS---------------LLKVTKQSLAQTFPEIKEMLKANEPAKC 275 (327)
Q Consensus 215 ~~~~g~~tt~~i~~v~q~~~----~~i~Dtpg~~~~~---------------l~~~~~~~l~~~~~~~~~~LSgGq~q~~ 275 (327)
. .+.++|+||++. .++.|+..+.... ++.+.+.++.+..+ ..|||||+||+
T Consensus 73 ~-------~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~---~~LSGGq~QRv 142 (362)
T 2it1_A 73 K-------DRNVGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYP---WQLSGGQQQRV 142 (362)
T ss_dssp G-------GTTEEEECTTCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCG---GGSCHHHHHHH
T ss_pred h-------HCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCCh---hhCCHHHHHHH
Confidence 2 356999999753 2333443321100 00011111111222 23999999999
Q ss_pred cccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 276 SFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 276 ~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
++++++ +.+|.++++|+| ...+..+.+++++..
T Consensus 143 alArAL-~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~ 181 (362)
T 2it1_A 143 AIARAL-VKEPEVLLLDEPLSNLDALLRLEVRAELKRLQK 181 (362)
T ss_dssp HHHHHH-TTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HcCCCEEEEECccccCCHHHHHHHHHHHHHHHH
Confidence 999999 999999999965 344555566666543
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=9.7e-23 Score=185.68 Aligned_cols=159 Identities=13% Similarity=0.191 Sum_probs=108.6
Q ss_pred CceeeccCcc----hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecc
Q 020346 137 YEPLFCSVES----KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (327)
Q Consensus 137 ~~~~~~s~~~----~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~ 211 (327)
++.++++|+. ..+++++++.+ +|++++|+||||||||||+++|+| +++|++|+|+++|.++..
T Consensus 4 ~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~G------------l~~p~~G~I~~~g~~~~~ 71 (235)
T 3tif_A 4 LKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGC------------LDKPTEGEVYIDNIKTND 71 (235)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTT------------SSCCSEEEEEETTEECTT
T ss_pred EEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhc------------CCCCCceEEEECCEEccc
Confidence 4567778863 35899999998 899999999999999999999999 999999999999999876
Q ss_pred ccccCCCcceeeEEEEEEEccCCC----eEEeCcccCCcc--ccccCH----h---------HHhhhh-HHHHHhcCccc
Q 020346 212 VSTKSGRGKHTTRHVSLLPLSGGG----YLADTPGFNQPS--LLKVTK----Q---------SLAQTF-PEIKEMLKANE 271 (327)
Q Consensus 212 ~s~~~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~~--l~~~~~----~---------~l~~~~-~~~~~~LSgGq 271 (327)
.+.... .+..++.++|+||++.. ++.|+..+.... ...... . .+.... ......|||||
T Consensus 72 ~~~~~~-~~~~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq 150 (235)
T 3tif_A 72 LDDDEL-TKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQ 150 (235)
T ss_dssp CCHHHH-HHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHH
T ss_pred CCHHHH-HHHhhccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHH
Confidence 653210 00013469999997532 333332221000 000000 0 110101 11123499999
Q ss_pred cccccccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 272 PAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 272 ~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
+||+++++++ +.+|.++|+|+| .......++++++..
T Consensus 151 ~QRv~iAral-~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~ 193 (235)
T 3tif_A 151 QQRVAIARAL-ANNPPIILADQPTWALDSKTGEKIMQLLKKLNE 193 (235)
T ss_dssp HHHHHHHHHH-TTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence 9999999999 999999999965 455666677777654
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.84 E-value=2.4e-23 Score=190.19 Aligned_cols=157 Identities=14% Similarity=0.200 Sum_probs=110.2
Q ss_pred CCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccc
Q 020346 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (327)
Q Consensus 136 ~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~ 214 (327)
.++.+.++|++..+++++++.+ +|++++|+||||||||||+|+|+| +++|++|+|.++|.++...+.
T Consensus 8 ~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~G------------l~~p~~G~i~~~g~~~~~~~~ 75 (240)
T 1ji0_A 8 EVQSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAG------------LVRAQKGKIIFNGQDITNKPA 75 (240)
T ss_dssp EEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTT------------SSCCSEEEEEETTEECTTCCH
T ss_pred EEEeEEEEECCeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhC------------CCCCCCceEEECCEECCCCCH
Confidence 4567888888778999999998 999999999999999999999999 999999999999998865432
Q ss_pred cCCCcceeeEEEEEEEccCC----CeEEeCcccCC-ccccccC----HhHHhhhhHHH-------HHhcCcccccccccc
Q 020346 215 KSGRGKHTTRHVSLLPLSGG----GYLADTPGFNQ-PSLLKVT----KQSLAQTFPEI-------KEMLKANEPAKCSFN 278 (327)
Q Consensus 215 ~~~~g~~tt~~i~~v~q~~~----~~i~Dtpg~~~-~~l~~~~----~~~l~~~~~~~-------~~~LSgGq~q~~~~~ 278 (327)
... .++.++|+||++. .++.|+..+.. .....-. ..++.+.++.+ ...|||||+||++++
T Consensus 76 ~~~----~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lA 151 (240)
T 1ji0_A 76 HVI----NRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIG 151 (240)
T ss_dssp HHH----HHTTEEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHH
T ss_pred HHH----HhCCEEEEecCCccCCCCcHHHHHHHhhhcCCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHH
Confidence 110 1335999999752 23334333221 0000000 01111111111 123999999999999
Q ss_pred ccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 279 NCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 279 ~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
+++ +.+|.++++|+| ...+...++++++.+
T Consensus 152 raL-~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~ 187 (240)
T 1ji0_A 152 RAL-MSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQ 187 (240)
T ss_dssp HHH-TTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH
T ss_pred HHH-HcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH
Confidence 999 999999999965 455666667776654
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.84 E-value=3e-23 Score=191.57 Aligned_cols=155 Identities=14% Similarity=0.135 Sum_probs=109.2
Q ss_pred cCCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccc
Q 020346 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (327)
Q Consensus 135 ~~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s 213 (327)
+.++.+.++|++..+++++++.+ +|++++|+||||||||||+|+|+| +++|++|+|+++|.++....
T Consensus 16 l~i~~l~~~y~~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~G------------l~~p~~G~I~~~g~~~~~~~ 83 (256)
T 1vpl_A 16 VVVKDLRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIIST------------LIKPSSGIVTVFGKNVVEEP 83 (256)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTT------------SSCCSEEEEEETTEETTTCH
T ss_pred EEEEEEEEEECCEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhc------------CCCCCceEEEECCEECCccH
Confidence 44677888998888999999998 999999999999999999999999 99999999999999875421
Q ss_pred ccCCCcceeeEEEEEEEccCCC----eEEeCcccCCccccccCHh----HHhhhhH---------HHHHhcCcccccccc
Q 020346 214 TKSGRGKHTTRHVSLLPLSGGG----YLADTPGFNQPSLLKVTKQ----SLAQTFP---------EIKEMLKANEPAKCS 276 (327)
Q Consensus 214 ~~~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~~l~~~~~~----~l~~~~~---------~~~~~LSgGq~q~~~ 276 (327)
. ..++.++|+||.+.. ++.|+..+... ....... ....... .....|||||+||++
T Consensus 84 ~------~~~~~i~~v~q~~~l~~~ltv~enl~~~~~-~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~ 156 (256)
T 1vpl_A 84 H------EVRKLISYLPEEAGAYRNMQGIEYLRFVAG-FYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLL 156 (256)
T ss_dssp H------HHHTTEEEECTTCCCCTTSBHHHHHHHHHH-HHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHH
T ss_pred H------HHhhcEEEEcCCCCCCCCCcHHHHHHHHHH-HcCCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHH
Confidence 1 134569999997532 22222221100 0000000 0111111 112249999999999
Q ss_pred ccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 277 FNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 277 ~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
+++++ +.+|.++|+|+| .......++++++..
T Consensus 157 lAraL-~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~ 194 (256)
T 1vpl_A 157 IARAL-MVNPRLAILDEPTSGLDVLNAREVRKILKQASQ 194 (256)
T ss_dssp HHHHH-TTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHH-HcCCCEEEEeCCccccCHHHHHHHHHHHHHHHh
Confidence 99999 999999999965 455666677777654
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A | Back alignment and structure |
|---|
Probab=99.84 E-value=6.1e-23 Score=198.99 Aligned_cols=151 Identities=14% Similarity=0.206 Sum_probs=108.7
Q ss_pred CCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecc---
Q 020346 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE--- 211 (327)
Q Consensus 136 ~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~--- 211 (327)
.++.+.++|++..+++++++.+ +|++++|+||||||||||+|+|+| +++|++|+|+++|+++..
T Consensus 5 ~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaG------------l~~p~~G~I~i~g~~~~~~~~ 72 (372)
T 1g29_1 5 RLVDVWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAG------------LEEPSRGQIYIGDKLVADPEK 72 (372)
T ss_dssp EEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHT------------SSCCSEEEEEETTEEEEEGGG
T ss_pred EEEeEEEEECCEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHc------------CCCCCccEEEECCEECccccc
Confidence 4567888888778999999998 999999999999999999999999 999999999999999865
Q ss_pred ---ccccCCCcceeeEEEEEEEccCC----CeEEeCcccCCcc---------------ccccCHhHHhhhhHHHHHhcCc
Q 020346 212 ---VSTKSGRGKHTTRHVSLLPLSGG----GYLADTPGFNQPS---------------LLKVTKQSLAQTFPEIKEMLKA 269 (327)
Q Consensus 212 ---~s~~~~~g~~tt~~i~~v~q~~~----~~i~Dtpg~~~~~---------------l~~~~~~~l~~~~~~~~~~LSg 269 (327)
.+. ..+.++|+||++. .++.|+..+.... ++.+.+.++.+..+ ..|||
T Consensus 73 ~~~~~~-------~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~---~~LSG 142 (372)
T 1g29_1 73 GIFVPP-------KDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKP---RELSG 142 (372)
T ss_dssp TEECCG-------GGSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCG---GGSCH
T ss_pred cccCCH-------hHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCc---ccCCH
Confidence 321 2356999999753 2333443321100 00001111111222 23999
Q ss_pred cccccccccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 270 NEPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 270 Gq~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
||+||+++++++ +.+|.++|+|+| ...+..+.+++++..
T Consensus 143 Gq~QRvalArAL-~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~ 187 (372)
T 1g29_1 143 GQRQRVALGRAI-VRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQR 187 (372)
T ss_dssp HHHHHHHHHHHH-HTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-hcCCCEEEECCCCccCCHHHHHHHHHHHHHHHH
Confidence 999999999999 999999999965 344555556666543
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=5.6e-23 Score=198.00 Aligned_cols=155 Identities=15% Similarity=0.213 Sum_probs=109.0
Q ss_pred CCceeeccCcchh--hHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccc
Q 020346 136 GYEPLFCSVESKL--GLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV 212 (327)
Q Consensus 136 ~~~~~~~s~~~~~--~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~ 212 (327)
.++.+.++|++.. +++++++.+ +|++++|+||||||||||+|+|+| +++|++|+|+++|+++...
T Consensus 5 ~i~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaG------------l~~p~~G~I~i~g~~i~~~ 72 (353)
T 1oxx_K 5 IVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAG------------LDVPSTGELYFDDRLVASN 72 (353)
T ss_dssp EEEEEEEEEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHT------------SSCCSEEEEEETTEEEEET
T ss_pred EEEeEEEEECCEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhC------------CCCCCceEEEECCEECccc
Confidence 3567888888777 999999998 899999999999999999999999 9999999999999988652
Q ss_pred cccCCCcceeeEEEEEEEccCC----CeEEeCcccCCcc---------------ccccCHhHHhhhhHHHHHhcCccccc
Q 020346 213 STKSGRGKHTTRHVSLLPLSGG----GYLADTPGFNQPS---------------LLKVTKQSLAQTFPEIKEMLKANEPA 273 (327)
Q Consensus 213 s~~~~~g~~tt~~i~~v~q~~~----~~i~Dtpg~~~~~---------------l~~~~~~~l~~~~~~~~~~LSgGq~q 273 (327)
.... -....+.++|+||++. .++.|+..+.... ++.+.+.++.+..+ ..|||||+|
T Consensus 73 ~~~~--~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~---~~LSGGq~Q 147 (353)
T 1oxx_K 73 GKLI--VPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFP---RELSGAQQQ 147 (353)
T ss_dssp TEES--SCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCG---GGSCHHHHH
T ss_pred cccc--CChhhCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCCh---hhCCHHHHH
Confidence 1000 0013467999999753 2344444332110 00011111112222 239999999
Q ss_pred cccccccccccCCceEEcccH------HHHHHHHHHHHHHH
Q 020346 274 KCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIR 308 (327)
Q Consensus 274 ~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~ 308 (327)
|+++++++ +.+|.++|+|+| ...+..+.+++++.
T Consensus 148 RvalAraL-~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~ 187 (353)
T 1oxx_K 148 RVALARAL-VKDPSLLLLDEPFSNLDARMRDSARALVKEVQ 187 (353)
T ss_dssp HHHHHHHH-TTCCSEEEEESTTTTSCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHH-HhCCCEEEEECCcccCCHHHHHHHHHHHHHHH
Confidence 99999999 999999999965 34455555565554
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 | Back alignment and structure |
|---|
Probab=99.84 E-value=4.2e-23 Score=198.49 Aligned_cols=149 Identities=16% Similarity=0.249 Sum_probs=108.3
Q ss_pred CceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccccc
Q 020346 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (327)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~ 215 (327)
++.+.++|++. +++++++.+ +|++++|+||||||||||+|+|+| +++|++|+|+++|+++...+.
T Consensus 4 ~~~l~~~y~~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaG------------l~~p~~G~I~~~g~~i~~~~~- 69 (348)
T 3d31_A 4 IESLSRKWKNF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAG------------FHVPDSGRILLDGKDVTDLSP- 69 (348)
T ss_dssp EEEEEEECSSC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHT------------SSCCSEEEEEETTEECTTSCH-
T ss_pred EEEEEEEECCE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHc------------CCCCCCcEEEECCEECCCCch-
Confidence 46778888777 999999998 899999999999999999999999 999999999999998865432
Q ss_pred CCCcceeeEEEEEEEccCC----CeEEeCcccCCcc------------ccccCHhHHhhhhHHHHHhcCccccccccccc
Q 020346 216 SGRGKHTTRHVSLLPLSGG----GYLADTPGFNQPS------------LLKVTKQSLAQTFPEIKEMLKANEPAKCSFNN 279 (327)
Q Consensus 216 ~~~g~~tt~~i~~v~q~~~----~~i~Dtpg~~~~~------------l~~~~~~~l~~~~~~~~~~LSgGq~q~~~~~~ 279 (327)
..+.++|+||++. .++.|+..+.... ++.+.+.++.+..+ ..|||||+||+++++
T Consensus 70 ------~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~---~~LSgGq~QRvalAr 140 (348)
T 3d31_A 70 ------EKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNP---LTLSGGEQQRVALAR 140 (348)
T ss_dssp ------HHHTCEEECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCG---GGSCHHHHHHHHHHH
T ss_pred ------hhCcEEEEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHcCCchHhcCCh---hhCCHHHHHHHHHHH
Confidence 3457999999752 2333433321100 01111111222222 239999999999999
Q ss_pred cccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 280 CLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 280 ~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
++ +.+|.++++|+| ...+..+.+++++..
T Consensus 141 aL-~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~ 175 (348)
T 3d31_A 141 AL-VTNPKILLLDEPLSALDPRTQENAREMLSVLHK 175 (348)
T ss_dssp HT-TSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHH
T ss_pred HH-HcCCCEEEEECccccCCHHHHHHHHHHHHHHHH
Confidence 99 999999999955 455555566666643
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.83 E-value=5.3e-23 Score=190.39 Aligned_cols=158 Identities=13% Similarity=0.114 Sum_probs=110.0
Q ss_pred cCCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecc--
Q 020346 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE-- 211 (327)
Q Consensus 135 ~~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~-- 211 (327)
+.++.+.++|++..+++++++.+ +|++++|+||||||||||+++|+| +++|++|+|+++|.++..
T Consensus 7 l~i~~l~~~y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~G------------l~~p~~G~i~~~g~~~~~~~ 74 (262)
T 1b0u_A 7 LHVIDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINF------------LEKPSEGAIIVNGQNINLVR 74 (262)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTT------------SSCCSEEEEEETTEECCEEE
T ss_pred EEEeeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhc------------CCCCCCcEEEECCEEccccc
Confidence 34567888898778999999998 999999999999999999999999 999999999999998752
Q ss_pred --------ccccCCCcceeeEEEEEEEccCCC----eEEeCcccCC---cc-------------ccccCHhHH-hhhhHH
Q 020346 212 --------VSTKSGRGKHTTRHVSLLPLSGGG----YLADTPGFNQ---PS-------------LLKVTKQSL-AQTFPE 262 (327)
Q Consensus 212 --------~s~~~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~---~~-------------l~~~~~~~l-~~~~~~ 262 (327)
.+... ....++.++|+||++.. ++.|+..+.. .. ++.+...+. .+..
T Consensus 75 ~~~~~~~~~~~~~--~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-- 150 (262)
T 1b0u_A 75 DKDGQLKVADKNQ--LRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKY-- 150 (262)
T ss_dssp CTTSSEEESCHHH--HHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSC--
T ss_pred cccccccccChhh--HHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCC--
Confidence 11100 00134569999997522 2333322210 00 000111111 1111
Q ss_pred HHHhcCccccccccccccccccCCceEEcccH------HHHHHHHHHHHHHHHh
Q 020346 263 IKEMLKANEPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRIR 310 (327)
Q Consensus 263 ~~~~LSgGq~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~~ 310 (327)
...|||||+||+++++++ +.+|.++|+|+| ...+...++++++.+.
T Consensus 151 -~~~LSgGq~qRv~lAraL-~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~ 202 (262)
T 1b0u_A 151 -PVHLSGGQQQRVSIARAL-AMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEE 202 (262)
T ss_dssp -GGGSCHHHHHHHHHHHHH-HTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHT
T ss_pred -cccCCHHHHHHHHHHHHH-hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhC
Confidence 224999999999999999 999999999955 4556666777776543
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=1.2e-22 Score=188.91 Aligned_cols=155 Identities=15% Similarity=0.204 Sum_probs=109.0
Q ss_pred cCCceeeccCcc---hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeec
Q 020346 135 WGYEPLFCSVES---KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (327)
Q Consensus 135 ~~~~~~~~s~~~---~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~ 210 (327)
+.++.+.++|++ ..+++++++.+ +|++++|+||||||||||+++|+| +++|++|+|+++|.++.
T Consensus 17 l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~G------------l~~p~~G~I~~~g~~i~ 84 (271)
T 2ixe_A 17 VKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQN------------LYQPTGGKVLLDGEPLV 84 (271)
T ss_dssp EEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTT------------SSCCSEEEEEETTEEGG
T ss_pred EEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhc------------CCCCCCCEEEECCEEcc
Confidence 446788889975 67899999998 999999999999999999999999 99999999999999886
Q ss_pred cccccCCCcceeeEEEEEEEccCCC---eEEeCcccCCccccc---c-------CHhHHhhhh--------HHHHHhcCc
Q 020346 211 EVSTKSGRGKHTTRHVSLLPLSGGG---YLADTPGFNQPSLLK---V-------TKQSLAQTF--------PEIKEMLKA 269 (327)
Q Consensus 211 ~~s~~~~~g~~tt~~i~~v~q~~~~---~i~Dtpg~~~~~l~~---~-------~~~~l~~~~--------~~~~~~LSg 269 (327)
..+... .++.++|+||++.. ++.|+..+....... + ...++...+ .+....|||
T Consensus 85 ~~~~~~-----~~~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSg 159 (271)
T 2ixe_A 85 QYDHHY-----LHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSG 159 (271)
T ss_dssp GBCHHH-----HHHHEEEECSSCCCCSSBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCH
T ss_pred cCCHHH-----HhccEEEEecCCccccccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCH
Confidence 544221 34569999997532 333333222111000 0 000111111 011234999
Q ss_pred cccccccccccccccCCceEEcccH------HHHHHHHHHHHHH
Q 020346 270 NEPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEI 307 (327)
Q Consensus 270 Gq~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~ 307 (327)
||+||+++++++ +.+|.++|+|+| .....+.++++++
T Consensus 160 Gq~QRv~lAraL-~~~p~lllLDEPts~LD~~~~~~i~~~l~~~ 202 (271)
T 2ixe_A 160 GQRQAVALARAL-IRKPRLLILDNATSALDAGNQLRVQRLLYES 202 (271)
T ss_dssp HHHHHHHHHHHH-TTCCSEEEEESTTTTCCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHH-hcCCCEEEEECCccCCCHHHHHHHHHHHHHH
Confidence 999999999999 999999999965 3445555555555
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.83 E-value=7.9e-23 Score=190.98 Aligned_cols=158 Identities=15% Similarity=0.194 Sum_probs=109.6
Q ss_pred cCCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeec--c
Q 020346 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG--E 211 (327)
Q Consensus 135 ~~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~--~ 211 (327)
+.++.+.++|++..+++++++.+ +|++++|+||||||||||+|+|+| +++|++|+|.++|.++. .
T Consensus 22 l~~~~l~~~y~~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~G------------l~~p~~G~I~~~g~~~~~~~ 89 (279)
T 2ihy_A 22 IQLDQIGRMKQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNA------------YEPATSGTVNLFGKMPGKVG 89 (279)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTT------------SSCCSEEEEEETTBCCC---
T ss_pred EEEEeEEEEECCEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhC------------CCCCCCeEEEECCEEccccc
Confidence 45677888898778999999998 999999999999999999999999 99999999999998875 3
Q ss_pred ccccCCCcceeeEEEEEEEccCC------CeEEeCcccCCcc---c-cccCH---hHHhhhhH---------HHHHhcCc
Q 020346 212 VSTKSGRGKHTTRHVSLLPLSGG------GYLADTPGFNQPS---L-LKVTK---QSLAQTFP---------EIKEMLKA 269 (327)
Q Consensus 212 ~s~~~~~g~~tt~~i~~v~q~~~------~~i~Dtpg~~~~~---l-~~~~~---~~l~~~~~---------~~~~~LSg 269 (327)
.+... .++.++|+||++. .++.|+..+.... + ..... ..+..... .....|||
T Consensus 90 ~~~~~-----~~~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSg 164 (279)
T 2ihy_A 90 YSAET-----VRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLST 164 (279)
T ss_dssp CCHHH-----HHTTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCH
T ss_pred CCHHH-----HcCcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCH
Confidence 22111 3456999999631 1333433221100 0 00000 01111111 11224999
Q ss_pred cccccccccccccccCCceEEcccH------HHHHHHHHHHHHHHHh
Q 020346 270 NEPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRIR 310 (327)
Q Consensus 270 Gq~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~~ 310 (327)
||+||+++++++ +.+|.++|+||| ...+.+.++++++...
T Consensus 165 GqkqRv~lAraL-~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~ 210 (279)
T 2ihy_A 165 GEKQRVMIARAL-MGQPQVLILDEPAAGLDFIARESLLSILDSLSDS 210 (279)
T ss_dssp HHHHHHHHHHHH-HTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-hCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHC
Confidence 999999999999 999999999965 4555666677776543
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.83 E-value=2e-22 Score=184.30 Aligned_cols=151 Identities=15% Similarity=0.254 Sum_probs=107.5
Q ss_pred CceeeccC-cchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccc
Q 020346 137 YEPLFCSV-ESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (327)
Q Consensus 137 ~~~~~~s~-~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~ 214 (327)
++.+.++| ++..+++++++.+ +|++++|+||||||||||+++|+| +++|++|+|.++|.++...+.
T Consensus 4 ~~~l~~~y~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G------------l~~p~~G~i~~~g~~~~~~~~ 71 (243)
T 1mv5_A 4 ARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLER------------FYQPTAGEITIDGQPIDNISL 71 (243)
T ss_dssp EEEEEECSSSSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTT------------SSCCSBSCEEETTEESTTTSC
T ss_pred EEEEEEEeCCCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhc------------CCCCCCcEEEECCEEhhhCCH
Confidence 46778888 5667999999998 999999999999999999999999 999999999999998876543
Q ss_pred cCCCcceeeEEEEEEEccCCC---eEEeCcccC-CccccccCHhHHhh------------hhH--------HHHHhcCcc
Q 020346 215 KSGRGKHTTRHVSLLPLSGGG---YLADTPGFN-QPSLLKVTKQSLAQ------------TFP--------EIKEMLKAN 270 (327)
Q Consensus 215 ~~~~g~~tt~~i~~v~q~~~~---~i~Dtpg~~-~~~l~~~~~~~l~~------------~~~--------~~~~~LSgG 270 (327)
.. .++.++|+||++.. ++.|+..+. ... .....+.. .+| +....||||
T Consensus 72 ~~-----~~~~i~~v~q~~~l~~~tv~enl~~~~~~~---~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgG 143 (243)
T 1mv5_A 72 EN-----WRSQIGFVSQDSAIMAGTIRENLTYGLEGD---YTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGG 143 (243)
T ss_dssp SC-----CTTTCCEECCSSCCCCEEHHHHTTSCTTSC---SCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHH
T ss_pred HH-----HHhhEEEEcCCCccccccHHHHHhhhccCC---CCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHH
Confidence 22 34568999997533 333443332 111 11111111 111 001249999
Q ss_pred ccccccccccccccCCceEEcccHH------HHHHHHHHHHHHH
Q 020346 271 EPAKCSFNNCLHLGEPGCVVKGDWE------RYQYYFQLLDEIR 308 (327)
Q Consensus 271 q~q~~~~~~~~h~~ep~~~v~~~~~------r~~~~~~ll~e~~ 308 (327)
|+||+++++++ +.+|.++++|+|. ..+...+++.++.
T Consensus 144 q~qrv~lAral-~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~ 186 (243)
T 1mv5_A 144 QRQRLAIARAF-LRNPKILMLDEATASLDSESESMVQKALDSLM 186 (243)
T ss_dssp HHHHHHHHHHH-HHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHH-hcCCCEEEEECCcccCCHHHHHHHHHHHHHhc
Confidence 99999999999 9999999999653 3334445555554
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.83 E-value=9.1e-23 Score=183.61 Aligned_cols=152 Identities=15% Similarity=0.197 Sum_probs=107.6
Q ss_pred cCCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccc
Q 020346 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (327)
Q Consensus 135 ~~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s 213 (327)
+.++.+.++|++ .+++++++.+ +|++++|+||||||||||+|+|+| +++|++|+|.++|.++. .
T Consensus 11 l~~~~ls~~y~~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~G------------l~~p~~G~I~~~g~~~~--~ 75 (214)
T 1sgw_A 11 LEIRDLSVGYDK-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTIST------------YLKPLKGEIIYNGVPIT--K 75 (214)
T ss_dssp EEEEEEEEESSS-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTT------------SSCCSEEEEEETTEEGG--G
T ss_pred EEEEEEEEEeCC-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhc------------CCCCCCeEEEECCEEhh--h
Confidence 446778889988 8999999998 999999999999999999999999 99999999999998875 1
Q ss_pred ccCCCcceeeEEEEEEEccCCC----eEEeCcccCCcccc-ccCHhHHhhhh--------HHHHHhcCcccccccccccc
Q 020346 214 TKSGRGKHTTRHVSLLPLSGGG----YLADTPGFNQPSLL-KVTKQSLAQTF--------PEIKEMLKANEPAKCSFNNC 280 (327)
Q Consensus 214 ~~~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~~l~-~~~~~~l~~~~--------~~~~~~LSgGq~q~~~~~~~ 280 (327)
.++.++|+||++.. ++.|+..+...... ......+.... ......|||||+||++++++
T Consensus 76 --------~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~LSgGqkqrv~lara 147 (214)
T 1sgw_A 76 --------VKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDLKKKLGELSQGTIRRVQLAST 147 (214)
T ss_dssp --------GGGGEEEECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCCTTSBGGGSCHHHHHHHHHHHH
T ss_pred --------hcCcEEEEeCCCcCCCCCCHHHHHHHHHHhcCCchHHHHHHHHHHHcCCCcCCCChhhCCHHHHHHHHHHHH
Confidence 23468999997532 22233222100000 00111111111 11123499999999999999
Q ss_pred ccccCCceEEcccH------HHHHHHHHHHHHHHHh
Q 020346 281 LHLGEPGCVVKGDW------ERYQYYFQLLDEIRIR 310 (327)
Q Consensus 281 ~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~~ 310 (327)
+ +.+|.++++||| ...+...++++++.+.
T Consensus 148 L-~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~ 182 (214)
T 1sgw_A 148 L-LVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKE 182 (214)
T ss_dssp T-TSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHH
T ss_pred H-HhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhC
Confidence 9 999999999966 3555566666666543
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.81 E-value=4e-22 Score=184.79 Aligned_cols=150 Identities=15% Similarity=0.232 Sum_probs=106.7
Q ss_pred CceeeccCc--c---hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeec
Q 020346 137 YEPLFCSVE--S---KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (327)
Q Consensus 137 ~~~~~~s~~--~---~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~ 210 (327)
++.+.++|+ + ..+++++++.+ +|++++|+||||||||||+|+|+| +++|++|+|.++|.++.
T Consensus 5 ~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~G------------l~~p~~G~I~~~g~~~~ 72 (266)
T 2yz2_A 5 VVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAG------------LIEPTSGDVLYDGERKK 72 (266)
T ss_dssp EEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTT------------SSCCSEEEEEETTEECC
T ss_pred EEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhC------------CCCCCCcEEEECCEECc
Confidence 456778886 3 46899999998 999999999999999999999999 99999999999998875
Q ss_pred cccccCCCcceeeEEEEEEEccC-C----CeEEeCcccCCcc-c-------------cccCHh--HHhhhhHHHHHhcCc
Q 020346 211 EVSTKSGRGKHTTRHVSLLPLSG-G----GYLADTPGFNQPS-L-------------LKVTKQ--SLAQTFPEIKEMLKA 269 (327)
Q Consensus 211 ~~s~~~~~g~~tt~~i~~v~q~~-~----~~i~Dtpg~~~~~-l-------------~~~~~~--~l~~~~~~~~~~LSg 269 (327)
.. . .++.++|+||++ . .++.|+..+.... . +.+... +..+.. ...|||
T Consensus 73 ~~---~-----~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~---~~~LSg 141 (266)
T 2yz2_A 73 GY---E-----IRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRV---PFFLSG 141 (266)
T ss_dssp HH---H-----HGGGEEEECSSGGGGCCCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCC---GGGSCH
T ss_pred hH---H-----hhhhEEEEeccchhhcCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCC---hhhCCH
Confidence 42 1 345699999973 1 2222332221100 0 001111 111111 234999
Q ss_pred cccccccccccccccCCceEEcccH------HHHHHHHHHHHHHHHh
Q 020346 270 NEPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRIR 310 (327)
Q Consensus 270 Gq~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~~ 310 (327)
||+||+++++++ +.+|.++|+|+| ...+...++++++...
T Consensus 142 Gq~qRv~lAraL-~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~ 187 (266)
T 2yz2_A 142 GEKRRVAIASVI-VHEPDILILDEPLVGLDREGKTDLLRIVEKWKTL 187 (266)
T ss_dssp HHHHHHHHHHHH-TTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHH-HcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHc
Confidence 999999999999 999999999955 4566666777776543
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.81 E-value=4.8e-22 Score=181.78 Aligned_cols=147 Identities=13% Similarity=0.154 Sum_probs=103.4
Q ss_pred CceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccccc
Q 020346 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (327)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~ 215 (327)
++.+.++|++ .++++++.+ + ++++|+||||||||||+++|+| +++|++|+|.++|.++...+.
T Consensus 4 ~~~l~~~y~~--~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~G------------l~~p~~G~i~~~g~~~~~~~~- 67 (240)
T 2onk_A 4 KVRAEKRLGN--FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAG------------IVKPDRGEVRLNGADITPLPP- 67 (240)
T ss_dssp EEEEEEEETT--EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHT------------SSCCSEEEEEETTEECTTSCT-
T ss_pred EEEEEEEeCC--EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhC------------CCCCCceEEEECCEECCcCch-
Confidence 4567777864 489999998 7 9999999999999999999999 999999999999998765321
Q ss_pred CCCcceeeEEEEEEEccCCC----eEEeCcccCCccc-------------cccCHhHHhhhhHHHHHhcCcccccccccc
Q 020346 216 SGRGKHTTRHVSLLPLSGGG----YLADTPGFNQPSL-------------LKVTKQSLAQTFPEIKEMLKANEPAKCSFN 278 (327)
Q Consensus 216 ~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~~l-------------~~~~~~~l~~~~~~~~~~LSgGq~q~~~~~ 278 (327)
.++.++|+||++.. ++.|+..+..... +.+...+..+.. ...|||||+||++++
T Consensus 68 ------~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---~~~LSgGqkqRv~lA 138 (240)
T 2onk_A 68 ------ERRGIGFVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRK---PARLSGGERQRVALA 138 (240)
T ss_dssp ------TTSCCBCCCSSCCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTTTCC---GGGSCHHHHHHHHHH
T ss_pred ------hhCcEEEEcCCCccCCCCcHHHHHHHHHHHcCCchHHHHHHHHHHHcCCHHHhcCC---hhhCCHHHHHHHHHH
Confidence 23568999997522 2333332211100 000000111111 224999999999999
Q ss_pred ccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 279 NCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 279 ~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
+++ +.+|.++++|+| ...+...++++++..
T Consensus 139 ral-~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~ 174 (240)
T 2onk_A 139 RAL-VIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQR 174 (240)
T ss_dssp HHH-TTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHH
T ss_pred HHH-HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence 999 999999999955 455666677777644
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=99.80 E-value=7.7e-21 Score=193.91 Aligned_cols=155 Identities=17% Similarity=0.274 Sum_probs=111.7
Q ss_pred cCCceeeccCcc--hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecc
Q 020346 135 WGYEPLFCSVES--KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (327)
Q Consensus 135 ~~~~~~~~s~~~--~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~ 211 (327)
+.++.+.++|++ ..+++++++.+ +|++++|+||||||||||+|+|+| +++|++|+|.++|.++.+
T Consensus 342 i~~~~v~~~y~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g------------~~~p~~G~i~~~g~~~~~ 409 (582)
T 3b5x_A 342 VDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTR------------FYDVDSGSICLDGHDVRD 409 (582)
T ss_pred EEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhc------------CCCCCCCEEEECCEEhhh
Confidence 567889999974 67999999998 999999999999999999999999 999999999999999876
Q ss_pred ccccCCCcceeeEEEEEEEccCC---CeEEeCcccCC-ccccc---------cCHhHHhhhhHH--------HHHhcCcc
Q 020346 212 VSTKSGRGKHTTRHVSLLPLSGG---GYLADTPGFNQ-PSLLK---------VTKQSLAQTFPE--------IKEMLKAN 270 (327)
Q Consensus 212 ~s~~~~~g~~tt~~i~~v~q~~~---~~i~Dtpg~~~-~~l~~---------~~~~~l~~~~~~--------~~~~LSgG 270 (327)
.+... .+++++++||++. .++.|+..+.. +.... ....+..+.+|+ -...||||
T Consensus 410 ~~~~~-----~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgG 484 (582)
T 3b5x_A 410 YKLTN-----LRRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGG 484 (582)
T ss_pred CCHHH-----HhcCeEEEcCCCccccccHHHHHhccCCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHH
Confidence 65432 5678999999863 23444443322 11100 011111111110 01249999
Q ss_pred ccccccccccccccCCceEEcccH------HHHHHHHHHHHHH
Q 020346 271 EPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEI 307 (327)
Q Consensus 271 q~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~ 307 (327)
|+||+++++++ +.+|.++++||| ...+...+.++++
T Consensus 485 q~qr~~iAral-~~~p~illlDEpts~LD~~~~~~i~~~l~~~ 526 (582)
T 3b5x_A 485 QRQRVAIARAL-LRDAPVLILDEATSALDTESERAIQAALDEL 526 (582)
T ss_pred HHHHHHHHHHH-HcCCCEEEEECccccCCHHHHHHHHHHHHHH
Confidence 99999999999 999999999965 3444445555554
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=8.2e-22 Score=192.10 Aligned_cols=142 Identities=13% Similarity=0.140 Sum_probs=103.7
Q ss_pred cCCceeeccC--cchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecc
Q 020346 135 WGYEPLFCSV--ESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (327)
Q Consensus 135 ~~~~~~~~s~--~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~ 211 (327)
+.++.+.++| ++..+++++++.+ +|++++|+||||||||||+++|+| +++ ++|+|+++|+++..
T Consensus 20 i~~~~l~~~y~~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaG------------l~~-~~G~I~i~G~~i~~ 86 (390)
T 3gd7_A 20 MTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLR------------LLN-TEGEIQIDGVSWDS 86 (390)
T ss_dssp EEEEEEEEESSSSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHT------------CSE-EEEEEEESSCBTTS
T ss_pred EEEEEEEEEecCCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhC------------CCC-CCeEEEECCEECCc
Confidence 4567889999 5678999999998 899999999999999999999999 877 89999999999877
Q ss_pred ccccCCCcceeeEEEEEEEccCCC---eEEeCcccCCcc--------ccccCHhHHhhhhHHHH--------HhcCcccc
Q 020346 212 VSTKSGRGKHTTRHVSLLPLSGGG---YLADTPGFNQPS--------LLKVTKQSLAQTFPEIK--------EMLKANEP 272 (327)
Q Consensus 212 ~s~~~~~g~~tt~~i~~v~q~~~~---~i~Dtpg~~~~~--------l~~~~~~~l~~~~~~~~--------~~LSgGq~ 272 (327)
.+... .++.++|+||++.. ++.++..+.... ++.+.+.++.+.+|... ..|||||+
T Consensus 87 ~~~~~-----~rr~ig~v~Q~~~lf~~tv~enl~~~~~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqr 161 (390)
T 3gd7_A 87 ITLEQ-----WRKAFGVIPQKVFIFSGTFRKNLDPNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHK 161 (390)
T ss_dssp SCHHH-----HHHTEEEESCCCCCCSEEHHHHHCTTCCSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHH
T ss_pred CChHH-----HhCCEEEEcCCcccCccCHHHHhhhccccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHH
Confidence 65432 45679999998633 222332211100 11111122222222110 01999999
Q ss_pred ccccccccccccCCceEEcccHH
Q 020346 273 AKCSFNNCLHLGEPGCVVKGDWE 295 (327)
Q Consensus 273 q~~~~~~~~h~~ep~~~v~~~~~ 295 (327)
||+++++++ +.+|+++|+|+|.
T Consensus 162 QRvalARAL-~~~P~lLLLDEPt 183 (390)
T 3gd7_A 162 QLMCLARSV-LSKAKILLLDEPS 183 (390)
T ss_dssp HHHHHHHHH-HTTCCEEEEESHH
T ss_pred HHHHHHHHH-hcCCCEEEEeCCc
Confidence 999999999 9999999999774
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} | Back alignment and structure |
|---|
Probab=99.80 E-value=2.1e-21 Score=179.50 Aligned_cols=152 Identities=16% Similarity=0.260 Sum_probs=107.6
Q ss_pred cCCceeeccCcc---hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeec
Q 020346 135 WGYEPLFCSVES---KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (327)
Q Consensus 135 ~~~~~~~~s~~~---~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~ 210 (327)
+.++.+.++|++ ..+++++++.+ +|++++|+||||||||||+++|+| +++| +|+|.++|.++.
T Consensus 18 l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G------------l~~~-~G~I~i~g~~i~ 84 (260)
T 2ghi_A 18 IEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYR------------FYDA-EGDIKIGGKNVN 84 (260)
T ss_dssp EEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTT------------SSCC-EEEEEETTEEGG
T ss_pred EEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhc------------cCCC-CeEEEECCEEhh
Confidence 456788889975 35899999998 999999999999999999999999 8887 899999999886
Q ss_pred cccccCCCcceeeEEEEEEEccCCC---eEEeCcccCCccccccCHhHHhhh-----hHHH---------------HHhc
Q 020346 211 EVSTKSGRGKHTTRHVSLLPLSGGG---YLADTPGFNQPSLLKVTKQSLAQT-----FPEI---------------KEML 267 (327)
Q Consensus 211 ~~s~~~~~g~~tt~~i~~v~q~~~~---~i~Dtpg~~~~~l~~~~~~~l~~~-----~~~~---------------~~~L 267 (327)
..+... .++.++|+||++.. ++.|+..+.... .....+... ..+. ...|
T Consensus 85 ~~~~~~-----~~~~i~~v~Q~~~l~~~tv~enl~~~~~~---~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~L 156 (260)
T 2ghi_A 85 KYNRNS-----IRSIIGIVPQDTILFNETIKYNILYGKLD---ATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKL 156 (260)
T ss_dssp GBCHHH-----HHTTEEEECSSCCCCSEEHHHHHHTTCTT---CCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCC
T ss_pred hcCHHH-----HhccEEEEcCCCcccccCHHHHHhccCCC---CCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcC
Confidence 554221 34569999997633 233333222111 011111100 0111 1249
Q ss_pred CccccccccccccccccCCceEEcccH------HHHHHHHHHHHHHH
Q 020346 268 KANEPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIR 308 (327)
Q Consensus 268 SgGq~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~ 308 (327)
||||+||+++++++ +.+|.++|+|+| ...+...++++++.
T Consensus 157 SgGqkqRv~lAraL-~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~ 202 (260)
T 2ghi_A 157 SGGERQRIAIARCL-LKDPKIVIFDEATSSLDSKTEYLFQKAVEDLR 202 (260)
T ss_dssp CHHHHHHHHHHHHH-HHCCSEEEEECCCCTTCHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHH-HcCCCEEEEECccccCCHHHHHHHHHHHHHhc
Confidence 99999999999999 999999999954 45555566666653
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C | Back alignment and structure |
|---|
Probab=99.80 E-value=1.4e-21 Score=179.74 Aligned_cols=140 Identities=16% Similarity=0.130 Sum_probs=99.3
Q ss_pred hhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcceeeEEE
Q 020346 148 LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHV 226 (327)
Q Consensus 148 ~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~tt~~i 226 (327)
.+++++++.+ +|++++|+||||||||||+|+|+| +++|+ |+|.++|.++...+... .++.+
T Consensus 14 ~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~G------------l~~p~-G~i~~~g~~~~~~~~~~-----~~~~i 75 (249)
T 2qi9_C 14 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAG------------MTSGK-GSIQFAGQPLEAWSATK-----LALHR 75 (249)
T ss_dssp TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTT------------SSCCE-EEEEETTEEGGGSCHHH-----HHHHE
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhC------------CCCCC-eEEEECCEECCcCCHHH-----HhceE
Confidence 5789999998 999999999999999999999999 99999 99999999886543221 34569
Q ss_pred EEEEccCCC----eEEeCcccCCc-c---------ccccCHhHHhhhhHHHHHhcCccccccccccccccccCCc-----
Q 020346 227 SLLPLSGGG----YLADTPGFNQP-S---------LLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPG----- 287 (327)
Q Consensus 227 ~~v~q~~~~----~i~Dtpg~~~~-~---------l~~~~~~~l~~~~~~~~~~LSgGq~q~~~~~~~~h~~ep~----- 287 (327)
+|+||++.. ++.|+..+... . ++.+...+..+.. ...|||||+||+++++++ +.+|.
T Consensus 76 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---~~~LSgGq~qrv~lAraL-~~~p~~~~~~ 151 (249)
T 2qi9_C 76 AYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRS---TNQLSGGEWQRVRLAAVV-LQITPQANPA 151 (249)
T ss_dssp EEECSCCCCCTTCBHHHHHHTTCSSTTCHHHHHHHHHHTTCGGGTTSB---GGGCCHHHHHHHHHHHHH-HHHCTTTCTT
T ss_pred EEECCCCccCCCCcHHHHHHHhhccCCcHHHHHHHHHHcCChhHhcCC---hhhCCHHHHHHHHHHHHH-HcCCCcCCCC
Confidence 999997532 33333322110 0 0001111111111 234999999999999999 89999
Q ss_pred --eEEcccH------HHHHHHHHHHHHHHH
Q 020346 288 --CVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 288 --~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
++++|+| ...+...++++++..
T Consensus 152 ~~lllLDEPts~LD~~~~~~l~~~l~~l~~ 181 (249)
T 2qi9_C 152 GQLLLLDEPMNSLDVAQQSALDKILSALSQ 181 (249)
T ss_dssp CCEEEESSTTTTCCHHHHHHHHHHHHHHHH
T ss_pred CeEEEEECCcccCCHHHHHHHHHHHHHHHh
Confidence 9999965 455666667777644
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.80 E-value=5.8e-21 Score=195.50 Aligned_cols=155 Identities=13% Similarity=0.260 Sum_probs=113.6
Q ss_pred cCCceeeccCcc-hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccc
Q 020346 135 WGYEPLFCSVES-KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV 212 (327)
Q Consensus 135 ~~~~~~~~s~~~-~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~ 212 (327)
+.++.++++|+. ..+++++++.+ +|++++|+||||||||||+|+|+| +++|++|+|.++|.++...
T Consensus 355 i~~~~v~~~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g------------~~~p~~G~i~~~g~~i~~~ 422 (598)
T 3qf4_B 355 IEFKNVWFSYDKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMR------------FYDVDRGQILVDGIDIRKI 422 (598)
T ss_dssp EEEEEEECCSSSSSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTT------------SSCCSEEEEEETTEEGGGS
T ss_pred EEEEEEEEECCCCCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhc------------CcCCCCeEEEECCEEhhhC
Confidence 557788999964 56899999998 899999999999999999999999 9999999999999999887
Q ss_pred cccCCCcceeeEEEEEEEccCC---CeEEeCcccCCccccc---------cCHhHHhhhhH--------HHHHhcCcccc
Q 020346 213 STKSGRGKHTTRHVSLLPLSGG---GYLADTPGFNQPSLLK---------VTKQSLAQTFP--------EIKEMLKANEP 272 (327)
Q Consensus 213 s~~~~~g~~tt~~i~~v~q~~~---~~i~Dtpg~~~~~l~~---------~~~~~l~~~~~--------~~~~~LSgGq~ 272 (327)
+... .+++++++||++. +++.|+..+..+.... ....+....+| +-...|||||+
T Consensus 423 ~~~~-----~r~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~ 497 (598)
T 3qf4_B 423 KRSS-----LRSSIGIVLQDTILFSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQR 497 (598)
T ss_dssp CHHH-----HHHHEEEECTTCCCCSSBHHHHHHSSSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHH
T ss_pred CHHH-----HHhceEEEeCCCccccccHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHH
Confidence 6543 5678999999862 3444444333221110 11111111111 11235999999
Q ss_pred ccccccccccccCCceEEcccH------HHHHHHHHHHHHH
Q 020346 273 AKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEI 307 (327)
Q Consensus 273 q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~ 307 (327)
||+++|+++ +.+|.++++||| ...+...+.++++
T Consensus 498 Qrv~iAral-~~~p~illlDEpts~LD~~~~~~i~~~l~~~ 537 (598)
T 3qf4_B 498 QLLAITRAF-LANPKILILDEATSNVDTKTEKSIQAAMWKL 537 (598)
T ss_dssp HHHHHHHHH-HTCCSEEEECCCCTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-hcCCCEEEEECCccCCCHHHHHHHHHHHHHH
Confidence 999999999 999999999954 4444455555555
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=1.3e-22 Score=186.39 Aligned_cols=156 Identities=15% Similarity=0.186 Sum_probs=101.7
Q ss_pred CCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCccccccc--ccccccceeecceeeccc
Q 020346 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNW--FEPILGSKWFEDQRVGEV 212 (327)
Q Consensus 136 ~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~--~~p~~G~i~~~g~~v~~~ 212 (327)
.++.+.++|++..+++++++.+ +|++++|+||||||||||+|+|+| + ++|++|+|.++|.++...
T Consensus 5 ~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G------------l~~~~p~~G~I~~~g~~~~~~ 72 (250)
T 2d2e_A 5 EIRDLWASIDGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAG------------DPEYTVERGEILLDGENILEL 72 (250)
T ss_dssp EEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHT------------CTTCEEEEEEEEETTEECTTS
T ss_pred EEEeEEEEECCEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhC------------CCCCCCCceEEEECCEECCCC
Confidence 4567888888778999999998 999999999999999999999999 6 799999999999988654
Q ss_pred cccCCCcceeeEEEEEEEccCCC----eEEeCcccCCccccc--cC----HhHHhhhh----------HHHHHh-cCccc
Q 020346 213 STKSGRGKHTTRHVSLLPLSGGG----YLADTPGFNQPSLLK--VT----KQSLAQTF----------PEIKEM-LKANE 271 (327)
Q Consensus 213 s~~~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~~l~~--~~----~~~l~~~~----------~~~~~~-LSgGq 271 (327)
+.... .+..++++||++.. ++.++..+....... .. ...+.... ...... |||||
T Consensus 73 ~~~~~----~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq 148 (250)
T 2d2e_A 73 SPDER----ARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGE 148 (250)
T ss_dssp CHHHH----HHTTBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----H
T ss_pred CHHHH----HhCcEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHH
Confidence 42210 12347788886532 222222111000000 00 01111111 111124 99999
Q ss_pred cccccccccccccCCceEEcccH------HHHHHHHHHHHHHH
Q 020346 272 PAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIR 308 (327)
Q Consensus 272 ~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~ 308 (327)
+||+++++++ +.+|.++|+|+| ...+...++++++.
T Consensus 149 kQrv~iAraL-~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~ 190 (250)
T 2d2e_A 149 KKRNEILQLL-VLEPTYAVLDETDSGLDIDALKVVARGVNAMR 190 (250)
T ss_dssp HHHHHHHHHH-HHCCSEEEEECGGGTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHH-HcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHH
Confidence 9999999999 999999999966 35555556666653
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A | Back alignment and structure |
|---|
Probab=99.79 E-value=7.6e-21 Score=193.84 Aligned_cols=155 Identities=16% Similarity=0.233 Sum_probs=111.8
Q ss_pred cCCceeeccCcc--hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecc
Q 020346 135 WGYEPLFCSVES--KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (327)
Q Consensus 135 ~~~~~~~~s~~~--~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~ 211 (327)
+.++.++++|++ ..+++++++.+ +|++++|+||||||||||+++|+| +++|++|+|.++|.++..
T Consensus 340 i~~~~v~~~y~~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g------------~~~p~~G~i~~~g~~~~~ 407 (578)
T 4a82_A 340 IDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPR------------FYDVTSGQILIDGHNIKD 407 (578)
T ss_dssp EEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTT------------SSCCSEEEEEETTEEGGG
T ss_pred EEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhc------------CCCCCCcEEEECCEEhhh
Confidence 556788999964 46899999998 899999999999999999999999 999999999999999987
Q ss_pred ccccCCCcceeeEEEEEEEccCC---CeEEeCcccCCccccccCHh---------HHhhhhHH--------HHHhcCccc
Q 020346 212 VSTKSGRGKHTTRHVSLLPLSGG---GYLADTPGFNQPSLLKVTKQ---------SLAQTFPE--------IKEMLKANE 271 (327)
Q Consensus 212 ~s~~~~~g~~tt~~i~~v~q~~~---~~i~Dtpg~~~~~l~~~~~~---------~l~~~~~~--------~~~~LSgGq 271 (327)
.+... .+++++++||++. .++.|+..+..+....-+.. +.....|+ -...|||||
T Consensus 408 ~~~~~-----~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq 482 (578)
T 4a82_A 408 FLTGS-----LRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQ 482 (578)
T ss_dssp SCHHH-----HHHTEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHH
T ss_pred CCHHH-----HhhheEEEeCCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHH
Confidence 76443 5677999999752 34445544432211100000 00111110 012499999
Q ss_pred cccccccccccccCCceEEcccH------HHHHHHHHHHHHH
Q 020346 272 PAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEI 307 (327)
Q Consensus 272 ~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~ 307 (327)
+||+++|+++ +.+|+++++||| ...+...+.++++
T Consensus 483 ~Qrv~lAral-~~~p~illlDEpts~LD~~~~~~i~~~l~~~ 523 (578)
T 4a82_A 483 KQRLSIARIF-LNNPPILILDEATSALDLESESIIQEALDVL 523 (578)
T ss_dssp HHHHHHHHHH-HHCCSEEEEESTTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HcCCCEEEEECccccCCHHHHHHHHHHHHHH
Confidence 9999999999 999999999965 3444444555544
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A | Back alignment and structure |
|---|
Probab=99.79 E-value=5.9e-21 Score=194.78 Aligned_cols=153 Identities=14% Similarity=0.264 Sum_probs=112.0
Q ss_pred cCCceeeccCcc--hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecc
Q 020346 135 WGYEPLFCSVES--KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (327)
Q Consensus 135 ~~~~~~~~s~~~--~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~ 211 (327)
+.++.++++|++ ..+++++++.+ +|++++|+||||||||||+++|+| +++|++|+|.++|.++..
T Consensus 342 i~~~~v~~~y~~~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g------------~~~p~~G~i~~~g~~~~~ 409 (582)
T 3b60_A 342 LEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITR------------FYDIDEGHILMDGHDLRE 409 (582)
T ss_dssp EEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTT------------TTCCSEEEEEETTEETTT
T ss_pred EEEEEEEEEcCCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhh------------ccCCCCCeEEECCEEccc
Confidence 456788999973 67999999998 999999999999999999999999 999999999999999877
Q ss_pred ccccCCCcceeeEEEEEEEccCC---CeEEeCcccCC-ccccccCHhHHhhh-----hHHH-H--------------Hhc
Q 020346 212 VSTKSGRGKHTTRHVSLLPLSGG---GYLADTPGFNQ-PSLLKVTKQSLAQT-----FPEI-K--------------EML 267 (327)
Q Consensus 212 ~s~~~~~g~~tt~~i~~v~q~~~---~~i~Dtpg~~~-~~l~~~~~~~l~~~-----~~~~-~--------------~~L 267 (327)
.+... .+++++++||++. .++.|+..+.. +. ...+++.+. ..++ . ..|
T Consensus 410 ~~~~~-----~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~---~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~L 481 (582)
T 3b60_A 410 YTLAS-----LRNQVALVSQNVHLFNDTVANNIAYARTEE---YSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLL 481 (582)
T ss_dssp BCHHH-----HHHTEEEECSSCCCCSSBHHHHHHTTTTSC---CCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSS
T ss_pred cCHHH-----HHhhCeEEccCCcCCCCCHHHHHhccCCCC---CCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCC
Confidence 65332 4567999999863 24444444322 11 111111110 0111 1 249
Q ss_pred CccccccccccccccccCCceEEcccH------HHHHHHHHHHHHHH
Q 020346 268 KANEPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIR 308 (327)
Q Consensus 268 SgGq~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~ 308 (327)
||||+||+++++++ +.+|.++++||| ...+...+.++++.
T Consensus 482 SgGq~qrl~iAral-~~~p~illlDEpts~LD~~~~~~i~~~l~~~~ 527 (582)
T 3b60_A 482 SGGQRQRIAIARAL-LRDSPILILDEATSALDTESERAIQAALDELQ 527 (582)
T ss_dssp CHHHHHHHHHHHHH-HHCCSEEEEETTTSSCCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH-HhCCCEEEEECccccCCHHHHHHHHHHHHHHh
Confidence 99999999999999 999999999965 34444555666553
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A | Back alignment and structure |
|---|
Probab=99.78 E-value=4e-21 Score=178.21 Aligned_cols=156 Identities=15% Similarity=0.124 Sum_probs=105.3
Q ss_pred cCCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCccccccc--ccccccceeecceeecc
Q 020346 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNW--FEPILGSKWFEDQRVGE 211 (327)
Q Consensus 135 ~~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~--~~p~~G~i~~~g~~v~~ 211 (327)
+.++.+.++|++..+++++++.+ +|++++|+||||||||||+|+|+| + ++|++|+|+++|.++..
T Consensus 21 l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G------------l~~~~p~~G~I~~~g~~i~~ 88 (267)
T 2zu0_C 21 LSIKDLHVSVEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAG------------REDYEVTGGTVEFKGKDLLA 88 (267)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHT------------CTTCEEEEEEEEETTEEGGG
T ss_pred EEEEeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhC------------CCCCCCCCeEEEECCEECCc
Confidence 45678888898778999999998 999999999999999999999999 6 57999999999998865
Q ss_pred ccccCCCcceeeEEEEEEEccCCC----eEEeCcccCC------ccccccCH----hHHhhhh----------HHHHH-h
Q 020346 212 VSTKSGRGKHTTRHVSLLPLSGGG----YLADTPGFNQ------PSLLKVTK----QSLAQTF----------PEIKE-M 266 (327)
Q Consensus 212 ~s~~~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~------~~l~~~~~----~~l~~~~----------~~~~~-~ 266 (327)
.+.... .+..+++++|++.. ++.++..+.. ........ ..+.+.. ..... .
T Consensus 89 ~~~~~~----~~~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~ 164 (267)
T 2zu0_C 89 LSPEDR----AGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVG 164 (267)
T ss_dssp SCHHHH----HHHTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTT
T ss_pred CCHHHH----hhCCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccC
Confidence 542210 12348999997532 1111111100 00000000 0011100 00111 3
Q ss_pred cCccccccccccccccccCCceEEcccH------HHHHHHHHHHHHH
Q 020346 267 LKANEPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEI 307 (327)
Q Consensus 267 LSgGq~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~ 307 (327)
|||||+||+++++++ +.+|.++|+|+| ...+.+.++++++
T Consensus 165 LSgGq~QRv~iAraL-~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l 210 (267)
T 2zu0_C 165 FSGGEKKRNDILQMA-VLEPELCILDESDSGLDIDALKVVADGVNSL 210 (267)
T ss_dssp CCHHHHHHHHHHHHH-HHCCSEEEEESTTTTCCHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHH-HhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999 999999999965 3445555555555
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.78 E-value=8.7e-21 Score=193.83 Aligned_cols=155 Identities=17% Similarity=0.212 Sum_probs=111.9
Q ss_pred cCCceeeccCc--chhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecc
Q 020346 135 WGYEPLFCSVE--SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (327)
Q Consensus 135 ~~~~~~~~s~~--~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~ 211 (327)
+.++.++++|. +..+++++++.+ +|++++|+||||||||||+|+|+| +++|++|+|.++|+++..
T Consensus 342 i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g------------~~~~~~G~i~i~g~~i~~ 409 (587)
T 3qf4_A 342 VSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPR------------LIDPERGRVEVDELDVRT 409 (587)
T ss_dssp EEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTT------------SSCCSEEEEEESSSBGGG
T ss_pred EEEEEEEEEcCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhC------------CccCCCcEEEECCEEccc
Confidence 55678899994 457999999998 899999999999999999999999 999999999999999988
Q ss_pred ccccCCCcceeeEEEEEEEccCC---CeEEeCcccCCccccccCHh---HHhhhhHHH--------------HHhcCccc
Q 020346 212 VSTKSGRGKHTTRHVSLLPLSGG---GYLADTPGFNQPSLLKVTKQ---SLAQTFPEI--------------KEMLKANE 271 (327)
Q Consensus 212 ~s~~~~~g~~tt~~i~~v~q~~~---~~i~Dtpg~~~~~l~~~~~~---~l~~~~~~~--------------~~~LSgGq 271 (327)
.+... .+++++++||++. .++.|+..+..+....-... +.....+.+ ...|||||
T Consensus 410 ~~~~~-----~r~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGq 484 (587)
T 3qf4_A 410 VKLKD-----LRGHISAVPQETVLFSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQ 484 (587)
T ss_dssp BCHHH-----HHHHEEEECSSCCCCSEEHHHHHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHH
T ss_pred CCHHH-----HHhheEEECCCCcCcCccHHHHHhccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHH
Confidence 76543 5678999999863 24445544432211100000 011111111 12499999
Q ss_pred cccccccccccccCCceEEcccH------HHHHHHHHHHHHH
Q 020346 272 PAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEI 307 (327)
Q Consensus 272 ~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~ 307 (327)
+||+++++++ +.+|+++|+||| ...+...+.++++
T Consensus 485 rQrv~lARal-~~~p~illlDEpts~LD~~~~~~i~~~l~~~ 525 (587)
T 3qf4_A 485 KQRLSIARAL-VKKPKVLILDDCTSSVDPITEKRILDGLKRY 525 (587)
T ss_dssp HHHHHHHHHH-HTCCSEEEEESCCTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HcCCCEEEEECCcccCCHHHHHHHHHHHHHh
Confidence 9999999999 999999999955 3444444445444
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A | Back alignment and structure |
|---|
Probab=99.78 E-value=6.7e-21 Score=172.79 Aligned_cols=130 Identities=16% Similarity=0.118 Sum_probs=92.6
Q ss_pred cCCceeeccCc--chhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecc
Q 020346 135 WGYEPLFCSVE--SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (327)
Q Consensus 135 ~~~~~~~~s~~--~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~ 211 (327)
+.++.+.++|. +..+++++++.+ +|++++|+||||||||||+++|+| +++|++|+|.++|
T Consensus 7 l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G------------l~~p~~G~i~~~g----- 69 (229)
T 2pze_A 7 VVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMG------------ELEPSEGKIKHSG----- 69 (229)
T ss_dssp EEEEEEEECSSTTSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTT------------SSCCSEEEEEECS-----
T ss_pred EEEEEEEEEeCCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhC------------CCcCCccEEEECC-----
Confidence 34567888884 467899999998 999999999999999999999999 9999999999987
Q ss_pred ccccCCCcceeeEEEEEEEccCCC---eEEeCcccCCcc----c----cccCHhHHhhhhHHH--------HHhcCcccc
Q 020346 212 VSTKSGRGKHTTRHVSLLPLSGGG---YLADTPGFNQPS----L----LKVTKQSLAQTFPEI--------KEMLKANEP 272 (327)
Q Consensus 212 ~s~~~~~g~~tt~~i~~v~q~~~~---~i~Dtpg~~~~~----l----~~~~~~~l~~~~~~~--------~~~LSgGq~ 272 (327)
.++|+||.+.. ++.|+..+.... . +.....+....++.. ...|||||+
T Consensus 70 -------------~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqk 136 (229)
T 2pze_A 70 -------------RISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQR 136 (229)
T ss_dssp -------------CEEEECSSCCCCSBCHHHHHHTTSCCCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHH
T ss_pred -------------EEEEEecCCcccCCCHHHHhhccCCcChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHH
Confidence 27788886532 223332221100 0 000001111111100 135999999
Q ss_pred ccccccccccccCCceEEcccHH
Q 020346 273 AKCSFNNCLHLGEPGCVVKGDWE 295 (327)
Q Consensus 273 q~~~~~~~~h~~ep~~~v~~~~~ 295 (327)
||+++++++ +.+|.++++|+|.
T Consensus 137 qrv~lAral-~~~p~lllLDEPt 158 (229)
T 2pze_A 137 ARISLARAV-YKDADLYLLDSPF 158 (229)
T ss_dssp HHHHHHHHH-HSCCSEEEEESTT
T ss_pred HHHHHHHHH-hcCCCEEEEECcc
Confidence 999999999 9999999999663
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.78 E-value=9.2e-21 Score=174.51 Aligned_cols=143 Identities=15% Similarity=0.146 Sum_probs=100.2
Q ss_pred CCceeeccCc-chhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccc
Q 020346 136 GYEPLFCSVE-SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (327)
Q Consensus 136 ~~~~~~~s~~-~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s 213 (327)
.++.+.++|+ +..+++++++.+ +|++++|+||||||||||+|+|+| +++|++|+|.+
T Consensus 6 ~i~~l~~~y~~~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G------------l~~p~~G~I~~--------- 64 (253)
T 2nq2_C 6 SVENLGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLG------------IHRPIQGKIEV--------- 64 (253)
T ss_dssp EEEEEEEEETTTTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTT------------SSCCSEEEEEE---------
T ss_pred EEeeEEEEeCCCCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhC------------CCCCCCcEEEE---------
Confidence 4567888887 778999999998 999999999999999999999999 99999999871
Q ss_pred ccCCCcceeeEEEEEEEccCCC----eEEeCcccCCccc-------cccCHhHHhhhhH---------HHHHhcCccccc
Q 020346 214 TKSGRGKHTTRHVSLLPLSGGG----YLADTPGFNQPSL-------LKVTKQSLAQTFP---------EIKEMLKANEPA 273 (327)
Q Consensus 214 ~~~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~~l-------~~~~~~~l~~~~~---------~~~~~LSgGq~q 273 (327)
.+.++|+||++.. ++.|+..+..... .......+..... .....|||||+|
T Consensus 65 ---------~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~q 135 (253)
T 2nq2_C 65 ---------YQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQ 135 (253)
T ss_dssp ---------CSCEEEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHH
T ss_pred ---------eccEEEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHH
Confidence 2358899997532 3333332211000 0000011111111 112249999999
Q ss_pred cccccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 274 KCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 274 ~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
|+++++++ +.+|.++++|+| ...+...+++.++..
T Consensus 136 rv~lAraL-~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~ 176 (253)
T 2nq2_C 136 LILIARAI-ASECKLILLDEPTSALDLANQDIVLSLLIDLAQ 176 (253)
T ss_dssp HHHHHHHH-HTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence 99999999 999999999955 455666677776654
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.77 E-value=9.1e-21 Score=209.20 Aligned_cols=142 Identities=15% Similarity=0.259 Sum_probs=111.0
Q ss_pred hcCCceeeccCcc---hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceee
Q 020346 134 TWGYEPLFCSVES---KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRV 209 (327)
Q Consensus 134 ~~~~~~~~~s~~~---~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v 209 (327)
.+.|+.++++|.+ .++|+++++.+ +|+++||||+||||||||+++|.| +|+|++|+|.+||.++
T Consensus 1076 ~I~f~nVsf~Y~~~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~r------------l~~p~~G~I~iDG~di 1143 (1321)
T 4f4c_A 1076 KVIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLER------------FYDTLGGEIFIDGSEI 1143 (1321)
T ss_dssp CEEEEEEEECCTTSCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTT------------SSCCSSSEEEETTEET
T ss_pred eEEEEEEEEeCCCCCCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhc------------CccCCCCEEEECCEEh
Confidence 3568899999964 35899999998 999999999999999999999999 9999999999999999
Q ss_pred ccccccCCCcceeeEEEEEEEccC---CCeEEeCcccCCccccccCHhHHhh------hhHHHH--------------Hh
Q 020346 210 GEVSTKSGRGKHTTRHVSLLPLSG---GGYLADTPGFNQPSLLKVTKQSLAQ------TFPEIK--------------EM 266 (327)
Q Consensus 210 ~~~s~~~~~g~~tt~~i~~v~q~~---~~~i~Dtpg~~~~~l~~~~~~~l~~------~~~~~~--------------~~ 266 (327)
.+++.+. .++++++|||++ ++++.||..+.... ...+.+++.+ ..+.+. ..
T Consensus 1144 ~~i~~~~-----lR~~i~~V~Qdp~LF~gTIreNI~~gld~-~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~ 1217 (1321)
T 4f4c_A 1144 KTLNPEH-----TRSQIAIVSQEPTLFDCSIAENIIYGLDP-SSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQ 1217 (1321)
T ss_dssp TTBCHHH-----HHTTEEEECSSCCCCSEEHHHHHSSSSCT-TTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCS
T ss_pred hhCCHHH-----HHhheEEECCCCEeeCccHHHHHhccCCC-CCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcc
Confidence 9988765 788899999986 45666665543211 1122222221 111111 13
Q ss_pred cCccccccccccccccccCCceEEcccH
Q 020346 267 LKANEPAKCSFNNCLHLGEPGCVVKGDW 294 (327)
Q Consensus 267 LSgGq~q~~~~~~~~h~~ep~~~v~~~~ 294 (327)
|||||+||+++|+++ +.+|.++|+||+
T Consensus 1218 LSgGQrQriaiARAl-lr~~~ILiLDEa 1244 (1321)
T 4f4c_A 1218 LSGGQKQRIAIARAL-VRNPKILLLDEA 1244 (1321)
T ss_dssp SCHHHHHHHHHHHHH-HSCCSEEEEESC
T ss_pred cCHHHHHHHHHHHHH-HhCCCEEEEeCc
Confidence 899999999999999 999999999954
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.77 E-value=4.1e-21 Score=177.93 Aligned_cols=146 Identities=16% Similarity=0.228 Sum_probs=101.9
Q ss_pred CceeeccCcc----hhhHHHHHhhcCCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccc
Q 020346 137 YEPLFCSVES----KLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV 212 (327)
Q Consensus 137 ~~~~~~s~~~----~~~l~~l~~~l~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~ 212 (327)
++.+.++|++ ..+++++++.++|++++|+||||||||||+++|+| ++ |++|+|.++|.++...
T Consensus 4 ~~~l~~~y~~~~~~~~il~~vsl~i~Ge~~~i~G~NGsGKSTLlk~l~G------------l~-p~~G~I~~~g~~~~~~ 70 (263)
T 2pjz_A 4 LKNVGITLSGKGYERFSLENINLEVNGEKVIILGPNGSGKTTLLRAISG------------LL-PYSGNIFINGMEVRKI 70 (263)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEECSSEEEEECCTTSSHHHHHHHHTT------------SS-CCEEEEEETTEEGGGC
T ss_pred EEEEEEEeCCCCccceeEEeeeEEECCEEEEEECCCCCCHHHHHHHHhC------------CC-CCCcEEEECCEECcch
Confidence 4567788876 67899999997899999999999999999999999 89 9999999999987542
Q ss_pred cccCCCcceeeEEEE-EEEccCCC--eEEeCcccCCc--c---------ccccCHh-HHhhhhHHHHHhcCccccccccc
Q 020346 213 STKSGRGKHTTRHVS-LLPLSGGG--YLADTPGFNQP--S---------LLKVTKQ-SLAQTFPEIKEMLKANEPAKCSF 277 (327)
Q Consensus 213 s~~~~~g~~tt~~i~-~v~q~~~~--~i~Dtpg~~~~--~---------l~~~~~~-~l~~~~~~~~~~LSgGq~q~~~~ 277 (327)
. .++.++ |+||++.. ++.|+..+... . ++.+... +..... ...|||||+||+++
T Consensus 71 -~-------~~~~i~~~v~Q~~~l~~tv~enl~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~---~~~LSgGqkqRv~l 139 (263)
T 2pjz_A 71 -R-------NYIRYSTNLPEAYEIGVTVNDIVYLYEELKGLDRDLFLEMLKALKLGEEILRRK---LYKLSAGQSVLVRT 139 (263)
T ss_dssp -S-------CCTTEEECCGGGSCTTSBHHHHHHHHHHHTCCCHHHHHHHHHHTTCCGGGGGSB---GGGSCHHHHHHHHH
T ss_pred -H-------HhhheEEEeCCCCccCCcHHHHHHHhhhhcchHHHHHHHHHHHcCCChhHhcCC---hhhCCHHHHHHHHH
Confidence 1 134688 99997532 22222221100 0 0011111 111111 23499999999999
Q ss_pred cccccccCCceEEcccH------HHHHHHHHHHHHH
Q 020346 278 NNCLHLGEPGCVVKGDW------ERYQYYFQLLDEI 307 (327)
Q Consensus 278 ~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~ 307 (327)
++++ +.+|.++++|+| ...+...++++++
T Consensus 140 AraL-~~~p~lllLDEPts~LD~~~~~~l~~~L~~~ 174 (263)
T 2pjz_A 140 SLAL-ASQPEIVGLDEPFENVDAARRHVISRYIKEY 174 (263)
T ss_dssp HHHH-HTCCSEEEEECTTTTCCHHHHHHHHHHHHHS
T ss_pred HHHH-HhCCCEEEEECCccccCHHHHHHHHHHHHHh
Confidence 9999 999999999965 3444444555544
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=2.7e-20 Score=169.73 Aligned_cols=129 Identities=17% Similarity=0.172 Sum_probs=92.4
Q ss_pred cCCceeeccCc--chhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecc
Q 020346 135 WGYEPLFCSVE--SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (327)
Q Consensus 135 ~~~~~~~~s~~--~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~ 211 (327)
+.++.+.++|+ +..+++++++.+ +|++++|+||||||||||+++|+| +++|++|+|.++|
T Consensus 4 l~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G------------l~~p~~G~I~~~g----- 66 (237)
T 2cbz_A 4 ITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLA------------EMDKVEGHVAIKG----- 66 (237)
T ss_dssp EEEEEEEEESCTTSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTT------------CSEEEEEEEEECS-----
T ss_pred EEEEEEEEEeCCCCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhc------------CCCCCCceEEECC-----
Confidence 34567888886 467899999998 999999999999999999999999 9999999999987
Q ss_pred ccccCCCcceeeEEEEEEEccCC---CeEEeCcccCCccccccCHhHHhh---hhHH--------------HHHhcCccc
Q 020346 212 VSTKSGRGKHTTRHVSLLPLSGG---GYLADTPGFNQPSLLKVTKQSLAQ---TFPE--------------IKEMLKANE 271 (327)
Q Consensus 212 ~s~~~~~g~~tt~~i~~v~q~~~---~~i~Dtpg~~~~~l~~~~~~~l~~---~~~~--------------~~~~LSgGq 271 (327)
.++|+||++. .++.|+..+.... ..-....... .... ....|||||
T Consensus 67 -------------~i~~v~Q~~~~~~~tv~enl~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGq 132 (237)
T 2cbz_A 67 -------------SVAYVPQQAWIQNDSLRENILFGCQL-EEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQ 132 (237)
T ss_dssp -------------CEEEECSSCCCCSEEHHHHHHTTSCC-CTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHH
T ss_pred -------------EEEEEcCCCcCCCcCHHHHhhCcccc-CHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHH
Confidence 1778888642 2233333222110 0000011110 1111 113499999
Q ss_pred cccccccccccccCCceEEcccHH
Q 020346 272 PAKCSFNNCLHLGEPGCVVKGDWE 295 (327)
Q Consensus 272 ~q~~~~~~~~h~~ep~~~v~~~~~ 295 (327)
+||+++++++ +.+|.++|+|+|.
T Consensus 133 kqRv~lAraL-~~~p~lllLDEPt 155 (237)
T 2cbz_A 133 KQRVSLARAV-YSNADIYLFDDPL 155 (237)
T ss_dssp HHHHHHHHHH-HHCCSEEEEESTT
T ss_pred HHHHHHHHHH-hcCCCEEEEeCcc
Confidence 9999999999 9999999999663
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.75 E-value=5.9e-20 Score=202.76 Aligned_cols=142 Identities=17% Similarity=0.255 Sum_probs=112.3
Q ss_pred cCCceeeccCcc---hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeec
Q 020346 135 WGYEPLFCSVES---KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (327)
Q Consensus 135 ~~~~~~~~s~~~---~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~ 210 (327)
+.|+.++|+|.+ .++|+++++.+ +|++++||||||||||||+++|+| +|+|++|+|.+||.++.
T Consensus 416 I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~------------~~~~~~G~I~idG~~i~ 483 (1321)
T 4f4c_A 416 ITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLR------------YYDVLKGKITIDGVDVR 483 (1321)
T ss_dssp EEEEEEEECCSSSTTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTT------------SSCCSEEEEEETTEETT
T ss_pred EEEEEeeeeCCCCCCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhcc------------ccccccCcccCCCccch
Confidence 567889999953 46899999998 999999999999999999999999 99999999999999999
Q ss_pred cccccCCCcceeeEEEEEEEccC---CCeEEeCcccCCccccccCHh---HHhhhhHHHHH--------------hcCcc
Q 020346 211 EVSTKSGRGKHTTRHVSLLPLSG---GGYLADTPGFNQPSLLKVTKQ---SLAQTFPEIKE--------------MLKAN 270 (327)
Q Consensus 211 ~~s~~~~~g~~tt~~i~~v~q~~---~~~i~Dtpg~~~~~l~~~~~~---~l~~~~~~~~~--------------~LSgG 270 (327)
+++... .+.+++|++|++ ++++.|+..+..+....-+.. +.....+.+.. .||||
T Consensus 484 ~~~~~~-----lr~~i~~v~Q~~~Lf~~TI~eNI~~g~~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGG 558 (1321)
T 4f4c_A 484 DINLEF-----LRKNVAVVSQEPALFNCTIEENISLGKEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGG 558 (1321)
T ss_dssp TSCHHH-----HHHHEEEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHH
T ss_pred hccHHH-----HhhcccccCCcceeeCCchhHHHhhhcccchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHH
Confidence 987654 678899999986 557777776664432111111 11111122221 39999
Q ss_pred ccccccccccccccCCceEEcccH
Q 020346 271 EPAKCSFNNCLHLGEPGCVVKGDW 294 (327)
Q Consensus 271 q~q~~~~~~~~h~~ep~~~v~~~~ 294 (327)
|+||+++|+++ +.+|.++|+||+
T Consensus 559 QkQRiaiARAl-~~~~~IliLDE~ 581 (1321)
T 4f4c_A 559 QKQRIAIARAL-VRNPKILLLDEA 581 (1321)
T ss_dssp HHHHHHHHHHH-TTCCSEEEEEST
T ss_pred HHHHHHHHHHH-ccCCCEEEEecc
Confidence 99999999999 999999999965
|
| >3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=7e-18 Score=156.00 Aligned_cols=141 Identities=23% Similarity=0.323 Sum_probs=108.1
Q ss_pred ccccccccEEEEEeecCCCCCChH-HHHHHHHHHHhcCCCEEEEeecCCCCcHHHHHHHHhhhhhcCCceeeccCcchhh
Q 020346 71 DPPVANVDHLLLLFSMDQPKLEPF-ALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVESKLG 149 (327)
Q Consensus 71 r~~~anvD~lliv~~~~~p~~~~~-~l~r~L~~a~~~~~~~~ivlnK~Dl~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 149 (327)
+..++|+|+++.|.++..|..+.. .++ ++ ++++++|+||+||.+++..+.|...+++.|+++ .+|+.+..+
T Consensus 16 ~~~l~~~D~vl~VvDar~P~~~~~~~l~-ll------~k~~iivlNK~DL~~~~~~~~~~~~~~~~g~~v-~iSa~~~~g 87 (262)
T 3cnl_A 16 KDLLRLVNTVVEVRDARAPFATSAYGVD-FS------RKETIILLNKVDIADEKTTKKWVEFFKKQGKRV-ITTHKGEPR 87 (262)
T ss_dssp HHHHTTCSEEEEEEETTSTTTTSCTTSC-CT------TSEEEEEEECGGGSCHHHHHHHHHHHHHTTCCE-EECCTTSCH
T ss_pred HHHHhhCCEEEEEeeCCCCCcCcChHHH-hc------CCCcEEEEECccCCCHHHHHHHHHHHHHcCCeE-EEECCCCcC
Confidence 457899999999999998865532 344 32 899999999999999877778888887788888 899988889
Q ss_pred HHHHHhhcCCC--EEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcceeeEEEE
Q 020346 150 LDSLLQRLRDQ--TTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVS 227 (327)
Q Consensus 150 l~~l~~~l~g~--~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~tt~~i~ 227 (327)
++.+...+... +++++|.||+|||||+|.|.|... + .++.. ++ +|+...
T Consensus 88 i~~L~~~l~~~~~~v~~vG~~~vGKSslin~l~~~~~------------~----------~~~~~---~g----~T~~~~ 138 (262)
T 3cnl_A 88 KVLLKKLSFDRLARVLIVGVPNTGKSTIINKLKGKRA------------S----------SVGAQ---PG----ITKGIQ 138 (262)
T ss_dssp HHHHHHHCCCTTCEEEEEESTTSSHHHHHHHHHTTCC---------------------------------------CCSC
T ss_pred HHHHHHHHHHhhhheEEeCCCCCCHHHHHHHHhcccc------------c----------ccCCC---CC----CccceE
Confidence 99988888664 999999999999999999999431 0 11111 12 555555
Q ss_pred EEEccCCCeEEeCcccCCccc
Q 020346 228 LLPLSGGGYLADTPGFNQPSL 248 (327)
Q Consensus 228 ~v~q~~~~~i~Dtpg~~~~~l 248 (327)
++....+..++||||+..+.+
T Consensus 139 ~~~~~~~~~l~DtpG~~~~~~ 159 (262)
T 3cnl_A 139 WFSLENGVKILDTPGILYKNI 159 (262)
T ss_dssp EEECTTSCEEESSCEECCCCC
T ss_pred EEEeCCCEEEEECCCcccCcC
Confidence 666666789999999997754
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=4.1e-19 Score=195.56 Aligned_cols=139 Identities=17% Similarity=0.304 Sum_probs=105.6
Q ss_pred cCCceeeccCcc---hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeec
Q 020346 135 WGYEPLFCSVES---KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (327)
Q Consensus 135 ~~~~~~~~s~~~---~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~ 210 (327)
+.++.++++|.+ ..+|+++++.+ +|++++||||||||||||+++|.| +++|++|+|.++|.++.
T Consensus 388 i~~~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g------------~~~~~~G~i~i~g~~i~ 455 (1284)
T 3g5u_A 388 LEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQR------------LYDPLDGMVSIDGQDIR 455 (1284)
T ss_dssp EEEEEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTT------------SSCCSEEEEEETTEEGG
T ss_pred EEEEEEEEEcCCCCCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhC------------CCCCCCeEEEECCEEHH
Confidence 557889999964 35899999998 999999999999999999999999 99999999999999998
Q ss_pred cccccCCCcceeeEEEEEEEccC---CCeEEeCcccCCccccccCHhHHhh------hhHHHH--------------Hhc
Q 020346 211 EVSTKSGRGKHTTRHVSLLPLSG---GGYLADTPGFNQPSLLKVTKQSLAQ------TFPEIK--------------EML 267 (327)
Q Consensus 211 ~~s~~~~~g~~tt~~i~~v~q~~---~~~i~Dtpg~~~~~l~~~~~~~l~~------~~~~~~--------------~~L 267 (327)
..+... .+++++++||++ .+++.|+..+..+. ...+++.. ..+.+. ..|
T Consensus 456 ~~~~~~-----~r~~i~~v~Q~~~l~~~ti~eNi~~g~~~---~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~L 527 (1284)
T 3g5u_A 456 TINVRY-----LREIIGVVSQEPVLFATTIAENIRYGRED---VTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQL 527 (1284)
T ss_dssp GSCHHH-----HHHHEEEECSSCCCCSSCHHHHHHHHCSS---CCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSS
T ss_pred hCCHHH-----HHhheEEEcCCCccCCccHHHHHhcCCCC---CCHHHHHHHHHHhCcHHHHHhccccccccccCCCCcc
Confidence 876543 567799999986 22344443332211 11111111 111111 149
Q ss_pred CccccccccccccccccCCceEEcccH
Q 020346 268 KANEPAKCSFNNCLHLGEPGCVVKGDW 294 (327)
Q Consensus 268 SgGq~q~~~~~~~~h~~ep~~~v~~~~ 294 (327)
||||+||+++|+++ +.+|+++|+|||
T Consensus 528 SgGq~QriaiARal-~~~p~iliLDEp 553 (1284)
T 3g5u_A 528 SGGQKQRIAIARAL-VRNPKILLLDEA 553 (1284)
T ss_dssp CHHHHHHHHHHHHH-HHCCSEEEEEST
T ss_pred CHHHHHHHHHHHHH-hcCCCEEEEECC
Confidence 99999999999999 999999999965
|
| >1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.72 E-value=1.8e-17 Score=154.81 Aligned_cols=143 Identities=25% Similarity=0.366 Sum_probs=102.8
Q ss_pred cccccccEEEEEeecCCCCCCh-HHHHHHHHHHHhcCCCEEEEeecCCCCcHHHHHHHHhhhhhcCCceeeccCcchhhH
Q 020346 72 PPVANVDHLLLLFSMDQPKLEP-FALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVESKLGL 150 (327)
Q Consensus 72 ~~~anvD~lliv~~~~~p~~~~-~~l~r~L~~a~~~~~~~~ivlnK~Dl~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l 150 (327)
..++++|+++.|.++..|..+. ..+++++ .++|.++|+||+||.+.+..+.|...++..+++++.+|+.+..++
T Consensus 19 ~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l-----~~kp~ilVlNK~DL~~~~~~~~~~~~~~~~g~~~i~iSA~~~~gi 93 (282)
T 1puj_A 19 EKLKLIDIVYELVDARIPMSSRNPMIEDIL-----KNKPRIMLLNKADKADAAVTQQWKEHFENQGIRSLSINSVNGQGL 93 (282)
T ss_dssp HHGGGCSEEEEEEETTSTTTTSCHHHHHHC-----SSSCEEEEEECGGGSCHHHHHHHHHHHHTTTCCEEECCTTTCTTG
T ss_pred HHHhhCCEEEEEEeCCCCCccCCHHHHHHH-----CCCCEEEEEECcccCCHHHHHHHHHHHHhcCCcEEEEECCCcccH
Confidence 3689999999999999886654 3677776 589999999999999987777888888777889899998766555
Q ss_pred HHHHhh----c--------------CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccc
Q 020346 151 DSLLQR----L--------------RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV 212 (327)
Q Consensus 151 ~~l~~~----l--------------~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~ 212 (327)
+.+... + .+-+++|+|.||||||||+|.|.|... ..+
T Consensus 94 ~~L~~~i~~~l~~~~~~~~~~~~~~~~~~v~~vG~~nvGKSsliN~l~~~~~-------------------------~~~ 148 (282)
T 1puj_A 94 NQIVPASKEILQEKFDRMRAKGVKPRAIRALIIGIPNVGKSTLINRLAKKNI-------------------------AKT 148 (282)
T ss_dssp GGHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEESTTSSHHHHHHHHHTSCC-------------------------C--
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCchHHHHHHHhcCce-------------------------eec
Confidence 443221 1 123799999999999999999999431 112
Q ss_pred cccCCCcceeeEEEEEEEccCCCeEEeCcccCCccc
Q 020346 213 STKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSL 248 (327)
Q Consensus 213 s~~~~~g~~tt~~i~~v~q~~~~~i~Dtpg~~~~~l 248 (327)
+..++ +|++..++.......++||||+..+..
T Consensus 149 ~~~~g----~T~~~~~~~~~~~~~l~DtpG~~~~~~ 180 (282)
T 1puj_A 149 GDRPG----ITTSQQWVKVGKELELLDTPGILWPKF 180 (282)
T ss_dssp --------------CCEEETTTEEEEECCCCCCSCC
T ss_pred CCCCC----eeeeeEEEEeCCCEEEEECcCcCCCCC
Confidence 22222 666666676666789999999987643
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=4.1e-19 Score=166.71 Aligned_cols=128 Identities=14% Similarity=0.128 Sum_probs=83.5
Q ss_pred cCCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccc
Q 020346 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (327)
Q Consensus 135 ~~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s 213 (327)
+.++.+.++ ...+++++++.+ +|++++|+||||||||||+++|+| +++|++|+|+++|
T Consensus 41 l~~~~l~~~--~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~G------------l~~p~~G~I~~~g------- 99 (290)
T 2bbs_A 41 LSFSNFSLL--GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMG------------ELEPSEGKIKHSG------- 99 (290)
T ss_dssp -----------CCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTT------------SSCEEEEEEECCS-------
T ss_pred EEEEEEEEc--CceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhc------------CCCCCCcEEEECC-------
Confidence 334444443 356899999998 899999999999999999999999 9999999999986
Q ss_pred ccCCCcceeeEEEEEEEccCCC---eEEeCcc-cCCcc------ccccCHhHHhhhhHH--------HHHhcCccccccc
Q 020346 214 TKSGRGKHTTRHVSLLPLSGGG---YLADTPG-FNQPS------LLKVTKQSLAQTFPE--------IKEMLKANEPAKC 275 (327)
Q Consensus 214 ~~~~~g~~tt~~i~~v~q~~~~---~i~Dtpg-~~~~~------l~~~~~~~l~~~~~~--------~~~~LSgGq~q~~ 275 (327)
.++|+||.+.. ++.|+.. ..... ++.....+....++. ....|||||+||+
T Consensus 100 -----------~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv 168 (290)
T 2bbs_A 100 -----------RISFCSQNSWIMPGTIKENIIGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARI 168 (290)
T ss_dssp -----------CEEEECSSCCCCSSBHHHHHHTTCCCHHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHH
T ss_pred -----------EEEEEeCCCccCcccHHHHhhCcccchHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHH
Confidence 27788886532 2223221 10000 000011111111111 1135999999999
Q ss_pred cccccccccCCceEEcccHH
Q 020346 276 SFNNCLHLGEPGCVVKGDWE 295 (327)
Q Consensus 276 ~~~~~~h~~ep~~~v~~~~~ 295 (327)
++++++ +.+|.++++|+|.
T Consensus 169 ~lAraL-~~~p~lllLDEPt 187 (290)
T 2bbs_A 169 SLARAV-YKDADLYLLDSPF 187 (290)
T ss_dssp HHHHHH-HSCCSEEEEESTT
T ss_pred HHHHHH-HCCCCEEEEECCc
Confidence 999999 9999999999663
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=7.9e-19 Score=193.35 Aligned_cols=153 Identities=16% Similarity=0.345 Sum_probs=109.7
Q ss_pred cCCceeeccCcch---hhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeec
Q 020346 135 WGYEPLFCSVESK---LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (327)
Q Consensus 135 ~~~~~~~~s~~~~---~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~ 210 (327)
+.++.+.++|.+. .+++++++.+ +|++++|+|+||||||||+++|.| +++|++|+|.++|.++.
T Consensus 1031 i~~~~v~~~y~~~~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g------------~~~p~~G~I~i~g~~i~ 1098 (1284)
T 3g5u_A 1031 VQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLER------------FYDPMAGSVFLDGKEIK 1098 (1284)
T ss_dssp EEEEEEEBCCSCGGGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTT------------SSCCSEEEEESSSSCTT
T ss_pred EEEEEEEEECCCCCCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhc------------CcCCCCCEEEECCEEcc
Confidence 3466788999643 5899999998 999999999999999999999999 99999999999999998
Q ss_pred cccccCCCcceeeEEEEEEEccC---CCeEEeCcccCCccccccCHhHHh------------hhhHHH--------HHhc
Q 020346 211 EVSTKSGRGKHTTRHVSLLPLSG---GGYLADTPGFNQPSLLKVTKQSLA------------QTFPEI--------KEML 267 (327)
Q Consensus 211 ~~s~~~~~g~~tt~~i~~v~q~~---~~~i~Dtpg~~~~~l~~~~~~~l~------------~~~~~~--------~~~L 267 (327)
..+... .+++++++||++ .+++.|+..+..+.. ....+++. ..+|+- ...|
T Consensus 1099 ~~~~~~-----~r~~i~~v~Q~~~l~~~ti~eNi~~~~~~~-~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~L 1172 (1284)
T 3g5u_A 1099 QLNVQW-----LRAQLGIVSQEPILFDCSIAENIAYGDNSR-VVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQL 1172 (1284)
T ss_dssp SSCHHH-----HTTSCEEEESSCCCCSSBHHHHHTCCCSSC-CCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSS
T ss_pred cCCHHH-----HHhceEEECCCCccccccHHHHHhccCCCC-CCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCcc
Confidence 766433 567799999986 334444443322110 01111111 111110 0249
Q ss_pred CccccccccccccccccCCceEEcccH------HHHHHHHHHHHH
Q 020346 268 KANEPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDE 306 (327)
Q Consensus 268 SgGq~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e 306 (327)
||||+||+++++++ +.+|.++|+||| ...+...+.+++
T Consensus 1173 SgGq~Qrv~iARal-~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~ 1216 (1284)
T 3g5u_A 1173 SGGQKQRIAIARAL-VRQPHILLLDEATSALDTESEKVVQEALDK 1216 (1284)
T ss_dssp CHHHHHHHHHHHHH-HHCCSSEEEESCSSSCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH-HcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 99999999999999 999999999955 344444444444
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.58 E-value=1e-16 Score=162.17 Aligned_cols=119 Identities=18% Similarity=0.135 Sum_probs=79.9
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcceeeEEEEEEEccC----
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSG---- 233 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~tt~~i~~v~q~~---- 233 (327)
+|++++|+||||||||||+++|+| +++|++|+|.+++..+ +++||..
T Consensus 293 ~Gei~~i~G~nGsGKSTLl~~l~G------------l~~p~~G~i~~~~~~i-----------------~~~~q~~~~~~ 343 (538)
T 3ozx_A 293 EGEIIGILGPNGIGKTTFARILVG------------EITADEGSVTPEKQIL-----------------SYKPQRIFPNY 343 (538)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTT------------SSCCSBCCEESSCCCE-----------------EEECSSCCCCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC------------CCCCCCcEEEECCeee-----------------Eeechhccccc
Confidence 899999999999999999999999 9999999998765544 3444432
Q ss_pred CCeEEeCcccC------------CccccccCHhHHhhhhHHHHHhcCccccccccccccccccCCceEEcccH------H
Q 020346 234 GGYLADTPGFN------------QPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDW------E 295 (327)
Q Consensus 234 ~~~i~Dtpg~~------------~~~l~~~~~~~l~~~~~~~~~~LSgGq~q~~~~~~~~h~~ep~~~v~~~~------~ 295 (327)
..++.++..+. ...++.+...+..+..+ ..|||||+||+.+|+++ +.+|+++|+|+| .
T Consensus 344 ~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---~~LSGGq~QRv~iAraL-~~~p~lLlLDEPT~gLD~~ 419 (538)
T 3ozx_A 344 DGTVQQYLENASKDALSTSSWFFEEVTKRLNLHRLLESNV---NDLSGGELQKLYIAATL-AKEADLYVLDQPSSYLDVE 419 (538)
T ss_dssp SSBHHHHHHHHCSSTTCTTSHHHHHTTTTTTGGGCTTSBG---GGCCHHHHHHHHHHHHH-HSCCSEEEEESTTTTCCHH
T ss_pred CCCHHHHHHHhhhhccchhHHHHHHHHHHcCCHHHhcCCh---hhCCHHHHHHHHHHHHH-HcCCCEEEEeCCccCCCHH
Confidence 11221211110 00112222222223333 34999999999999999 999999999966 3
Q ss_pred HHHHHHHHHHHHHH
Q 020346 296 RYQYYFQLLDEIRI 309 (327)
Q Consensus 296 r~~~~~~ll~e~~~ 309 (327)
......++++++..
T Consensus 420 ~~~~i~~~l~~l~~ 433 (538)
T 3ozx_A 420 ERYIVAKAIKRVTR 433 (538)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 44455566666643
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.56 E-value=6.8e-17 Score=163.48 Aligned_cols=152 Identities=14% Similarity=0.084 Sum_probs=94.7
Q ss_pred ceeeccCcch-hhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccce---------eecc
Q 020346 138 EPLFCSVESK-LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK---------WFED 206 (327)
Q Consensus 138 ~~~~~s~~~~-~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i---------~~~g 206 (327)
+.++++|+.. .++++++ .+ +|++++|+|+||||||||+|+|+| +++|++|++ .++|
T Consensus 25 ~~ls~~yg~~~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~G------------l~~p~~G~~~~~~~~~~~~~~g 91 (538)
T 1yqt_A 25 EDCVHRYGVNAFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAG------------QLIPNLCGDNDSWDGVIRAFRG 91 (538)
T ss_dssp CCEEEECSTTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHT------------SSCCCTTTTCCSHHHHHHHTTT
T ss_pred cCcEEEECCccccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhC------------CCCCCCCccCcchhhhHHhhCC
Confidence 3577888765 4788888 76 999999999999999999999999 889999996 4566
Q ss_pred eeeccccccCCCcceeeEEEEEEEccCCC-------eEEeCccc---CC---ccccccCHhHHhhhhHHHHHhcCccccc
Q 020346 207 QRVGEVSTKSGRGKHTTRHVSLLPLSGGG-------YLADTPGF---NQ---PSLLKVTKQSLAQTFPEIKEMLKANEPA 273 (327)
Q Consensus 207 ~~v~~~s~~~~~g~~tt~~i~~v~q~~~~-------~i~Dtpg~---~~---~~l~~~~~~~l~~~~~~~~~~LSgGq~q 273 (327)
.++........ . ....+++++|.... .+.+.... .. ..++.+......+.. ...|||||+|
T Consensus 92 ~~~~~~~~~~~-~--~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~~~~~~~~~~l~~lgl~~~~~~~---~~~LSgGekQ 165 (538)
T 1yqt_A 92 NELQNYFEKLK-N--GEIRPVVKPQYVDLIPKAVKGKVIELLKKADETGKLEEVVKALELENVLERE---IQHLSGGELQ 165 (538)
T ss_dssp STHHHHHHHHH-T--TSCCCEEECSCGGGSGGGCCSBHHHHHHHHCSSSCHHHHHHHTTCTTTTTSB---GGGCCHHHHH
T ss_pred ccHHHHHHHHH-H--HhhhhhhhhhhhhhcchhhhccHHHHHhhhhHHHHHHHHHHHcCCChhhhCC---hhhCCHHHHH
Confidence 55432110000 0 11235566663210 00000000 00 001111111111111 2349999999
Q ss_pred cccccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 274 KCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 274 ~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
|+++++++ +.+|+++|+|+| ...+.+.++++++..
T Consensus 166 Rv~iAraL-~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~ 206 (538)
T 1yqt_A 166 RVAIAAAL-LRNATFYFFDEPSSYLDIRQRLNAARAIRRLSE 206 (538)
T ss_dssp HHHHHHHH-HSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-hcCCCEEEEECCcccCCHHHHHHHHHHHHHHHh
Confidence 99999999 999999999965 455566677777654
|
| >3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.3e-14 Score=140.13 Aligned_cols=146 Identities=23% Similarity=0.302 Sum_probs=103.5
Q ss_pred ccccccEEEEEeecCCCCCCh-HHHHHHHHHHHhcCCCEEEEeecCCCCcHH----HHHHHHh-hhhhcCC---ceeecc
Q 020346 73 PVANVDHLLLLFSMDQPKLEP-FALTRFLVEAESTGIPLTLALNKVELVDEE----VLNTWKS-RLHTWGY---EPLFCS 143 (327)
Q Consensus 73 ~~anvD~lliv~~~~~p~~~~-~~l~r~L~~a~~~~~~~~ivlnK~Dl~~~~----~~~~~~~-~~~~~~~---~~~~~s 143 (327)
.....|.++.|+++..|..+. ..+.+++ .++|+++|+||+||.+.. ....|.. .++..|+ +++.+|
T Consensus 68 ~~~~~~lil~VvD~~d~~~s~~~~l~~~l-----~~~piilV~NK~DLl~~~~~~~~~~~~l~~~~~~~g~~~~~v~~iS 142 (369)
T 3ec1_A 68 IGESKALVVNIVDIFDFNGSFIPGLPRFA-----ADNPILLVGNKADLLPRSVKYPKLLRWMRRMAEELGLCPVDVCLVS 142 (369)
T ss_dssp HHHHCCEEEEEEETTCSGGGCCSSHHHHC-----TTSCEEEEEECGGGSCTTCCHHHHHHHHHHHHHTTTCCCSEEEECB
T ss_pred hhccCcEEEEEEECCCCCCchhhHHHHHh-----CCCCEEEEEEChhcCCCccCHHHHHHHHHHHHHHcCCCcccEEEEE
Confidence 346778999999998764322 1355554 378999999999998652 3445543 3566777 678899
Q ss_pred CcchhhHHHHHhhc----CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCc
Q 020346 144 VESKLGLDSLLQRL----RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRG 219 (327)
Q Consensus 144 ~~~~~~l~~l~~~l----~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g 219 (327)
+.+..+++.+...+ ++..++++|.+|+|||||+|+|.+.. ... ......+..++
T Consensus 143 A~~g~gi~~L~~~I~~~~~~~~i~~vG~~nvGKStliN~L~~~~------------~~~--------~~~~~~~~~~g-- 200 (369)
T 3ec1_A 143 AAKGIGMAKVMEAINRYREGGDVYVVGCTNVGKSTFINRIIEEA------------TGK--------GNVITTSYFPG-- 200 (369)
T ss_dssp TTTTBTHHHHHHHHHHHHTTSCEEEECCTTSSHHHHHHHHHHHH------------HHT--------TCCCEEEECTT--
T ss_pred CCCCCCHHHHHHHHHhhcccCcEEEEcCCCCchHHHHHHHHhhc------------cCC--------ccceeecCCCC--
Confidence 98888888776665 68899999999999999999999831 000 01111222223
Q ss_pred ceeeEEEEEEEccCCCeEEeCcccCCcc
Q 020346 220 KHTTRHVSLLPLSGGGYLADTPGFNQPS 247 (327)
Q Consensus 220 ~~tt~~i~~v~q~~~~~i~Dtpg~~~~~ 247 (327)
+|+....++...+..++||||+....
T Consensus 201 --tT~~~~~~~~~~~~~liDtPG~~~~~ 226 (369)
T 3ec1_A 201 --TTLDMIEIPLESGATLYDTPGIINHH 226 (369)
T ss_dssp --SSCEEEEEECSTTCEEEECCSCCCCS
T ss_pred --eEEeeEEEEeCCCeEEEeCCCcCcHH
Confidence 77777778877788999999998654
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=99.56 E-value=1.8e-16 Score=162.54 Aligned_cols=126 Identities=17% Similarity=0.177 Sum_probs=81.0
Q ss_pred HHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcceeeEEEEE
Q 020346 150 LDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSL 228 (327)
Q Consensus 150 l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~tt~~i~~ 228 (327)
++.+++.+ +|++++|+||||||||||+++|+| +++|++|+|.+. ..++|
T Consensus 372 l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~G------------l~~p~~G~I~~~------------------~~i~~ 421 (607)
T 3bk7_A 372 LEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAG------------VEEPTEGKVEWD------------------LTVAY 421 (607)
T ss_dssp EEECCEEEETTCEEEEECCTTSSHHHHHHHHHT------------SSCCSBSCCCCC------------------CCEEE
T ss_pred EEecccccCCCCEEEEECCCCCCHHHHHHHHhc------------CCCCCceEEEEe------------------eEEEE
Confidence 33333444 899999999999999999999999 899999998751 14789
Q ss_pred EEccCCC----eEEeCcccC-CccccccCHhHHhhhhHH---------HHHhcCccccccccccccccccCCceEEcccH
Q 020346 229 LPLSGGG----YLADTPGFN-QPSLLKVTKQSLAQTFPE---------IKEMLKANEPAKCSFNNCLHLGEPGCVVKGDW 294 (327)
Q Consensus 229 v~q~~~~----~i~Dtpg~~-~~~l~~~~~~~l~~~~~~---------~~~~LSgGq~q~~~~~~~~h~~ep~~~v~~~~ 294 (327)
+||+... ++.+..... ..... ........... ....|||||+||+.+++++ +.+|.++|+|+|
T Consensus 422 v~Q~~~~~~~~tv~e~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~QRv~iAraL-~~~p~lLlLDEP 498 (607)
T 3bk7_A 422 KPQYIKAEYEGTVYELLSKIDSSKLN--SNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATL-LRDADIYLLDEP 498 (607)
T ss_dssp ECSSCCCCCSSBHHHHHHHHHHHHHH--CHHHHHHTHHHHTCTTTTTSBGGGCCHHHHHHHHHHHHH-TSCCSEEEEECT
T ss_pred EecCccCCCCCcHHHHHHhhhccCCC--HHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHH-HhCCCEEEEeCC
Confidence 9997422 111110000 00000 00000111111 1234999999999999999 999999999965
Q ss_pred ------HHHHHHHHHHHHHH
Q 020346 295 ------ERYQYYFQLLDEIR 308 (327)
Q Consensus 295 ------~r~~~~~~ll~e~~ 308 (327)
.......++++++.
T Consensus 499 t~~LD~~~~~~l~~~l~~l~ 518 (607)
T 3bk7_A 499 SAYLDVEQRLAVSRAIRHLM 518 (607)
T ss_dssp TTTCCHHHHHHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHHHHHH
Confidence 34455556666664
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=99.55 E-value=1.3e-16 Score=163.64 Aligned_cols=152 Identities=13% Similarity=0.084 Sum_probs=95.7
Q ss_pred ceeeccCcch-hhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccce---------eecc
Q 020346 138 EPLFCSVESK-LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK---------WFED 206 (327)
Q Consensus 138 ~~~~~s~~~~-~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i---------~~~g 206 (327)
+.+.++|+.. .++++++ .+ +|++++|+||||||||||+|+|+| +++|++|++ .++|
T Consensus 95 ~~ls~~yg~~~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~G------------ll~p~~G~~~~~~~~~~~~~~G 161 (607)
T 3bk7_A 95 EDCVHRYGVNAFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAG------------QLIPNLCEDNDSWDNVIRAFRG 161 (607)
T ss_dssp GSEEEECSTTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTT------------SSCCCTTTTCCCHHHHHHHTTT
T ss_pred CCeEEEECCCCeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhC------------CCCCCCCccccccchhhheeCC
Confidence 5677888765 3788888 76 999999999999999999999999 899999996 4566
Q ss_pred eeeccccccCCCcceeeEEEEEEEccCCC-------eEEeCcccCC------ccccccCHhHHhhhhHHHHHhcCccccc
Q 020346 207 QRVGEVSTKSGRGKHTTRHVSLLPLSGGG-------YLADTPGFNQ------PSLLKVTKQSLAQTFPEIKEMLKANEPA 273 (327)
Q Consensus 207 ~~v~~~s~~~~~g~~tt~~i~~v~q~~~~-------~i~Dtpg~~~------~~l~~~~~~~l~~~~~~~~~~LSgGq~q 273 (327)
.++........ .....+++++|.... .+.+...... ..++.+.+....+..+ ..|||||+|
T Consensus 162 ~~~~~~~~~~~---~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~L~~lgL~~~~~~~~---~~LSGGekQ 235 (607)
T 3bk7_A 162 NELQNYFERLK---NGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELENVLDREL---HQLSGGELQ 235 (607)
T ss_dssp STHHHHHHHHH---HTSCCCEEECSCGGGGGGTCCSBHHHHHHHTCCSSCHHHHHHHTTCTTGGGSBG---GGCCHHHHH
T ss_pred Eehhhhhhhhh---hhhcceEEeechhhhchhhccccHHHHhhhhHHHHHHHHHHHHcCCCchhCCCh---hhCCHHHHH
Confidence 55433210000 011234556653110 0000000000 0011111112222222 349999999
Q ss_pred cccccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 274 KCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 274 ~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
|+++++++ +.+|+++|+|+| .....+.++++++..
T Consensus 236 RvaIAraL-~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~ 276 (607)
T 3bk7_A 236 RVAIAAAL-LRKAHFYFFDEPSSYLDIRQRLKVARVIRRLAN 276 (607)
T ss_dssp HHHHHHHH-HSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-hcCCCEEEEECCcccCCHHHHHHHHHHHHHHHh
Confidence 99999999 999999999965 455566677777654
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.55 E-value=3e-16 Score=158.73 Aligned_cols=123 Identities=16% Similarity=0.153 Sum_probs=80.8
Q ss_pred HHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcceeeEEEEEEE
Q 020346 152 SLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLP 230 (327)
Q Consensus 152 ~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~tt~~i~~v~ 230 (327)
.+++.+ +|++++|+|+||||||||+++|+| +++|++|+|.+. ..++|+|
T Consensus 304 ~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~G------------l~~p~~G~i~~~------------------~~i~~v~ 353 (538)
T 1yqt_A 304 VEPGEIKKGEVIGIVGPNGIGKTTFVKMLAG------------VEEPTEGKIEWD------------------LTVAYKP 353 (538)
T ss_dssp ECCEEEETTCEEEEECCTTSSHHHHHHHHHT------------SSCCSBCCCCCC------------------CCEEEEC
T ss_pred eCccccCCCCEEEEECCCCCCHHHHHHHHhC------------CCCCCCeEEEEC------------------ceEEEEe
Confidence 333334 899999999999999999999999 899999998751 1378899
Q ss_pred ccCCC----eEEeCcccC------C-----ccccccCHhHHhhhhHHHHHhcCccccccccccccccccCCceEEcccH-
Q 020346 231 LSGGG----YLADTPGFN------Q-----PSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDW- 294 (327)
Q Consensus 231 q~~~~----~i~Dtpg~~------~-----~~l~~~~~~~l~~~~~~~~~~LSgGq~q~~~~~~~~h~~ep~~~v~~~~- 294 (327)
|+... ++.+..... . ..++.+......... ...|||||+||+.+++++ +.+|.++|+|+|
T Consensus 354 Q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---~~~LSGGe~qrv~lAraL-~~~p~lLlLDEPt 429 (538)
T 1yqt_A 354 QYIKADYEGTVYELLSKIDASKLNSNFYKTELLKPLGIIDLYDRE---VNELSGGELQRVAIAATL-LRDADIYLLDEPS 429 (538)
T ss_dssp SSCCCCCSSBHHHHHHHHHHHHHTCHHHHHHTTTTTTCGGGTTSB---GGGCCHHHHHHHHHHHHH-TSCCSEEEEECTT
T ss_pred cCCcCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCChhhhcCC---hhhCCHHHHHHHHHHHHH-HhCCCEEEEeCCc
Confidence 87422 111110000 0 001111111111111 234999999999999999 999999999966
Q ss_pred -----HHHHHHHHHHHHHH
Q 020346 295 -----ERYQYYFQLLDEIR 308 (327)
Q Consensus 295 -----~r~~~~~~ll~e~~ 308 (327)
...+...++++++.
T Consensus 430 ~~LD~~~~~~i~~~l~~l~ 448 (538)
T 1yqt_A 430 AYLDVEQRLAVSRAIRHLM 448 (538)
T ss_dssp TTCCHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHH
Confidence 34455556666654
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.54 E-value=4.5e-15 Score=137.66 Aligned_cols=101 Identities=22% Similarity=0.293 Sum_probs=58.4
Q ss_pred EEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcceeeEEEEEEEccCC----Ce
Q 020346 161 TTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGG----GY 236 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~tt~~i~~v~q~~~----~~ 236 (327)
+++|+||||||||||+|+|+| +..|++|+|.++|.++.... ..+.+++++|..+ .+
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g------------~~~~~~G~i~~~g~~i~~~~--------~~~~i~~v~q~~~~~~~lt 63 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFK------------SQVSRKASSWNREEKIPKTV--------EIKAIGHVIEEGGVKMKLT 63 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHH------------HHC------------CCCCC--------SCCEEEESCC----CCEEE
T ss_pred EEEEECCCCCCHHHHHHHHhC------------CCCCCCCccccCCcccCcce--------eeeeeEEEeecCCCcCCce
Confidence 689999999999999999999 89999999999998763211 3467889998753 47
Q ss_pred EEeCcccCCccccccCHhHH-----hhhhHHHHHhcCccccccccccccc
Q 020346 237 LADTPGFNQPSLLKVTKQSL-----AQTFPEIKEMLKANEPAKCSFNNCL 281 (327)
Q Consensus 237 i~Dtpg~~~~~l~~~~~~~l-----~~~~~~~~~~LSgGq~q~~~~~~~~ 281 (327)
+.|++++............+ ..........|||||+||+.++++.
T Consensus 64 v~d~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal 113 (270)
T 3sop_A 64 VIDTPGFGDQINNENCWEPIEKYINEQYEKFLKEEVNIARKKRIPDTRVH 113 (270)
T ss_dssp EECCCC--CCSBCTTCSHHHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCC
T ss_pred EEechhhhhhcccHHHHHHHHHHHHHHHHhhhHHhcCcccchhhhhheee
Confidence 89999987543211111111 1112223445999999999999754
|
| >3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.54 E-value=3.4e-16 Score=139.94 Aligned_cols=127 Identities=13% Similarity=0.071 Sum_probs=80.1
Q ss_pred eccCcchhhHHHHHhhcCCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcc
Q 020346 141 FCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGK 220 (327)
Q Consensus 141 ~~s~~~~~~l~~l~~~l~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~ 220 (327)
..+|+...+++++ -+|++++|+||||||||||+++|+| + +|++|+|.. .++.. +...
T Consensus 7 pk~~g~~~~l~~i---~~Ge~~~liG~nGsGKSTLl~~l~G------------l-~p~~G~I~~--~~~~~-~~~~---- 63 (208)
T 3b85_A 7 PKTLGQKHYVDAI---DTNTIVFGLGPAGSGKTYLAMAKAV------------Q-ALQSKQVSR--IILTR-PAVE---- 63 (208)
T ss_dssp CCSHHHHHHHHHH---HHCSEEEEECCTTSSTTHHHHHHHH------------H-HHHTTSCSE--EEEEE-CSCC----
T ss_pred cCCHhHHHHHHhc---cCCCEEEEECCCCCCHHHHHHHHhc------------C-CCcCCeeee--EEecC-Cchh----
Confidence 3456677788886 3699999999999999999999999 9 999999953 22221 1111
Q ss_pred eeeEEEEEEEccCCCeEEeCc-ccCCccccccCHhHHhhhhHHHHHhcCccccccccccccccccCCceEEcccHHHH
Q 020346 221 HTTRHVSLLPLSGGGYLADTP-GFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWERY 297 (327)
Q Consensus 221 ~tt~~i~~v~q~~~~~i~Dtp-g~~~~~l~~~~~~~l~~~~~~~~~~LSgGq~q~~~~~~~~h~~ep~~~v~~~~~r~ 297 (327)
.++.++|+||++ .++. .+..+....+..........++.+. ..||+||+++++++ +.+|.++|+|+|..-
T Consensus 64 -~~~~ig~v~q~~----~enl~~~~~~~~~~~~~~~~~~~~~~~l~~-glGq~qrv~lAraL-~~~p~lllLDEPts~ 134 (208)
T 3b85_A 64 -AGEKLGFLPGTL----NEKIDPYLRPLHDALRDMVEPEVIPKLMEA-GIVEVAPLAYMRGR-TLNDAFVILDEAQNT 134 (208)
T ss_dssp -TTCCCCSSCC----------CTTTHHHHHHHTTTSCTTHHHHHHHT-TSEEEEEGGGGTTC-CBCSEEEEECSGGGC
T ss_pred -hhcceEEecCCH----HHHHHHHHHHHHHHHHHhccHHHHHHHHHh-CCchHHHHHHHHHH-hcCCCEEEEeCCccc
Confidence 345688888864 2222 1111000000000000112222222 44999999999999 999999999998743
|
| >3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=99.53 E-value=1.6e-14 Score=139.58 Aligned_cols=158 Identities=23% Similarity=0.244 Sum_probs=104.2
Q ss_pred ccccccEEEEEeecCCCCCCh-HHHHHHHHHHHhcCCCEEEEeecCCCCcHH----HHHHHHh-hhhhcCC---ceeecc
Q 020346 73 PVANVDHLLLLFSMDQPKLEP-FALTRFLVEAESTGIPLTLALNKVELVDEE----VLNTWKS-RLHTWGY---EPLFCS 143 (327)
Q Consensus 73 ~~anvD~lliv~~~~~p~~~~-~~l~r~L~~a~~~~~~~~ivlnK~Dl~~~~----~~~~~~~-~~~~~~~---~~~~~s 143 (327)
...+.|.+++|+++..|..+. ..+.+++ .++|+++|+||+||.+.. ....|.. .++..|+ +++.+|
T Consensus 66 i~~~~~~il~VvD~~d~~~~~~~~l~~~~-----~~~p~ilV~NK~DL~~~~~~~~~~~~~l~~~~~~~g~~~~~v~~iS 140 (368)
T 3h2y_A 66 IGKSDALVVKIVDIFDFNGSWLPGLHRFV-----GNNKVLLVGNKADLIPKSVKHDKVKHWMRYSAKQLGLKPEDVFLIS 140 (368)
T ss_dssp HHHSCCEEEEEEETTSHHHHCCTTHHHHS-----SSSCEEEEEECGGGSCTTSCHHHHHHHHHHHHHHTTCCCSEEEECC
T ss_pred HhccCcEEEEEEECCCCcccHHHHHHHHh-----CCCcEEEEEEChhcCCcccCHHHHHHHHHHHHHHcCCCcccEEEEe
Confidence 345778999999997653111 1234432 478999999999997653 3444543 3455677 678899
Q ss_pred CcchhhHHHHHhhc----CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCc
Q 020346 144 VESKLGLDSLLQRL----RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRG 219 (327)
Q Consensus 144 ~~~~~~l~~l~~~l----~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g 219 (327)
+.+..+++.+...+ ++..++++|.+|+|||||+|.|.+... |.+ ......+. .
T Consensus 141 A~~g~gi~~L~~~l~~~~~~~~i~~vG~~nvGKStliN~L~~~~~---------------~~~----~~~~~~~~----~ 197 (368)
T 3h2y_A 141 AAKGQGIAELADAIEYYRGGKDVYVVGCTNVGKSTFINRMIKEFS---------------DET----ENVITTSH----F 197 (368)
T ss_dssp TTTCTTHHHHHHHHHHHHTTSCEEEEEBTTSSHHHHHHHHHHHHT---------------TSC----SSCCEEEC----C
T ss_pred CCCCcCHHHHHhhhhhhcccceEEEecCCCCChhHHHHHHHhhhc---------------ccc----ccceecCC----C
Confidence 99888888877665 688999999999999999999998310 000 00111222 2
Q ss_pred ceeeEEEEEEEccCCCeEEeCcccCCcc--ccccCHhHHhh
Q 020346 220 KHTTRHVSLLPLSGGGYLADTPGFNQPS--LLKVTKQSLAQ 258 (327)
Q Consensus 220 ~~tt~~i~~v~q~~~~~i~Dtpg~~~~~--l~~~~~~~l~~ 258 (327)
+++|+....++...+..++||||+..+. .+.+..+.+..
T Consensus 198 ~gtT~~~~~~~~~~~~~liDtPG~~~~~~~~~~l~~~~l~~ 238 (368)
T 3h2y_A 198 PGTTLDLIDIPLDEESSLYDTPGIINHHQMAHYVGKQSLKL 238 (368)
T ss_dssp C----CEEEEESSSSCEEEECCCBCCTTSGGGGSCHHHHHH
T ss_pred CCeecceEEEEecCCeEEEeCCCcCcHHHHHHHhhHHHHHH
Confidence 3488888888877778999999997654 23344444443
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=99.50 E-value=1.2e-15 Score=162.86 Aligned_cols=57 Identities=23% Similarity=0.363 Sum_probs=50.5
Q ss_pred ceeeccCcc--hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecc
Q 020346 138 EPLFCSVES--KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFED 206 (327)
Q Consensus 138 ~~~~~s~~~--~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g 206 (327)
+.+.++|++ ..+++++++.+ +|++++|+||||||||||+|+|+| +++|++|+|++++
T Consensus 675 ~nLs~~Y~g~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaG------------ll~P~sG~I~~~~ 734 (986)
T 2iw3_A 675 TNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTG------------ELLPTSGEVYTHE 734 (986)
T ss_dssp EEEEECCTTCSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTT------------SSCCSEEEEEECT
T ss_pred EeeEEEeCCCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhC------------CCCCCceEEEEcC
Confidence 345677754 46899999998 999999999999999999999999 8999999999975
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.46 E-value=5.7e-15 Score=149.41 Aligned_cols=135 Identities=11% Similarity=0.119 Sum_probs=78.3
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccce-----------eecceeeccccccC-CCcceeeEE
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK-----------WFEDQRVGEVSTKS-GRGKHTTRH 225 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i-----------~~~g~~v~~~s~~~-~~g~~tt~~ 225 (327)
+|++++|+||||||||||+|+|+| +++|++|+| .++|.++....... .........
T Consensus 24 ~Gei~gLiGpNGaGKSTLlkiL~G------------l~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~ 91 (538)
T 3ozx_A 24 NNTILGVLGKNGVGKTTVLKILAG------------EIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHK 91 (538)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTT------------SSCCCTTCTTSCCCHHHHHHHHTTSTTHHHHHHHHTTCCCEEEE
T ss_pred CCCEEEEECCCCCcHHHHHHHHhc------------CCCCCCCccccccchhhHHhhcCCeeHHHHHHHHhhcccchhhc
Confidence 799999999999999999999999 899999998 56666654321100 000001222
Q ss_pred EEEEEccCCCe---EEeCcc---cC---CccccccCHhHHhhhhHHHHHhcCccccccccccccccccCCceEEcccH--
Q 020346 226 VSLLPLSGGGY---LADTPG---FN---QPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDW-- 294 (327)
Q Consensus 226 i~~v~q~~~~~---i~Dtpg---~~---~~~l~~~~~~~l~~~~~~~~~~LSgGq~q~~~~~~~~h~~ep~~~v~~~~-- 294 (327)
++++.+.+... +.+... .. ...++.+....+.+.. ...|||||+||+++++++ +.+|+++|+|+|
T Consensus 92 ~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~l~~l~l~~~~~~~---~~~LSgGe~Qrv~iA~aL-~~~p~illlDEPts 167 (538)
T 3ozx_A 92 IQYVEYASKFLKGTVNEILTKIDERGKKDEVKELLNMTNLWNKD---ANILSGGGLQRLLVAASL-LREADVYIFDQPSS 167 (538)
T ss_dssp CSCTTGGGTTCCSBHHHHHHHHCCSSCHHHHHHHTTCGGGTTSB---GGGCCHHHHHHHHHHHHH-HSCCSEEEEESTTT
T ss_pred cchhhhhhhhccCcHHHHhhcchhHHHHHHHHHHcCCchhhcCC---hhhCCHHHHHHHHHHHHH-HcCCCEEEEECCcc
Confidence 22222211100 000000 00 0001111111111222 234999999999999999 999999999965
Q ss_pred ----HHHHHHHHHHHHHH
Q 020346 295 ----ERYQYYFQLLDEIR 308 (327)
Q Consensus 295 ----~r~~~~~~ll~e~~ 308 (327)
.....+.++++++.
T Consensus 168 ~LD~~~~~~l~~~l~~l~ 185 (538)
T 3ozx_A 168 YLDVRERMNMAKAIRELL 185 (538)
T ss_dssp TCCHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHHHh
Confidence 34445556666653
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=1.6e-14 Score=141.67 Aligned_cols=132 Identities=16% Similarity=0.120 Sum_probs=89.1
Q ss_pred chhhHHHHHhhc-CCC--------------------EEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceee
Q 020346 146 SKLGLDSLLQRL-RDQ--------------------TTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWF 204 (327)
Q Consensus 146 ~~~~l~~l~~~l-~g~--------------------~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~ 204 (327)
+..+++++++.+ +|+ +++|+|+||||||||+|+|+| +.+|++|+|.+
T Consensus 35 ~~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~G------------l~~p~~GsI~~ 102 (413)
T 1tq4_A 35 SQEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRG------------IGNEEEGAAKT 102 (413)
T ss_dssp CHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHT------------CCTTSTTSCCC
T ss_pred CHHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhC------------CCCccCceEEE
Confidence 356899999988 888 999999999999999999999 89999999999
Q ss_pred cceeeccccccCCCcceeeEEEEEEEccC---CCeEEeCcccCCccccccCHhHHhhhh--HH--HHHhcCcc--ccccc
Q 020346 205 EDQRVGEVSTKSGRGKHTTRHVSLLPLSG---GGYLADTPGFNQPSLLKVTKQSLAQTF--PE--IKEMLKAN--EPAKC 275 (327)
Q Consensus 205 ~g~~v~~~s~~~~~g~~tt~~i~~v~q~~---~~~i~Dtpg~~~~~l~~~~~~~l~~~~--~~--~~~~LSgG--q~q~~ 275 (327)
+|.++.. .++++|.+ ..++.|+|++.... ....++...+ .+ ....||+| |+|++
T Consensus 103 ~g~~~t~--------------~~~v~q~~~~~~ltv~D~~g~~~~~---~~~~~~L~~~~L~~~~~~~~lS~G~~~kqrv 165 (413)
T 1tq4_A 103 GVVEVTM--------------ERHPYKHPNIPNVVFWDLPGIGSTN---FPPDTYLEKMKFYEYDFFIIISATRFKKNDI 165 (413)
T ss_dssp CC----C--------------CCEEEECSSCTTEEEEECCCGGGSS---CCHHHHHHHTTGGGCSEEEEEESSCCCHHHH
T ss_pred CCeecce--------------eEEeccccccCCeeehHhhcccchH---HHHHHHHHHcCCCccCCeEEeCCCCccHHHH
Confidence 8876421 03456553 46888999986421 1111111111 00 00128999 99999
Q ss_pred ccccccccc----------CCceEEcccHH------HHHHHHHHHHHH
Q 020346 276 SFNNCLHLG----------EPGCVVKGDWE------RYQYYFQLLDEI 307 (327)
Q Consensus 276 ~~~~~~h~~----------ep~~~v~~~~~------r~~~~~~ll~e~ 307 (327)
.+++++ .+ .|+++++|+|. ..+...++++++
T Consensus 166 ~la~aL-~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l 212 (413)
T 1tq4_A 166 DIAKAI-SMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLN 212 (413)
T ss_dssp HHHHHH-HHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHH
T ss_pred HHHHHH-HhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHH
Confidence 999887 55 77777777552 233344555555
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.9e-15 Score=154.84 Aligned_cols=52 Identities=25% Similarity=0.286 Sum_probs=40.2
Q ss_pred eeeccCcchh-hHHHHHhhcCCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccce
Q 020346 139 PLFCSVESKL-GLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202 (327)
Q Consensus 139 ~~~~s~~~~~-~l~~l~~~l~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i 202 (327)
.+.++|+... .++.+...-+|++++|+||||||||||+|+|+| +++|++|+|
T Consensus 82 ~~~~~Y~~~~~~l~~l~~~~~Gei~~LvGpNGaGKSTLLkiL~G------------ll~P~~G~i 134 (608)
T 3j16_B 82 HVTHRYSANSFKLHRLPTPRPGQVLGLVGTNGIGKSTALKILAG------------KQKPNLGRF 134 (608)
T ss_dssp TEEEECSTTSCEEECCCCCCTTSEEEEECCTTSSHHHHHHHHHT------------SSCCCTTTT
T ss_pred CeEEEECCCceeecCCCCCCCCCEEEEECCCCChHHHHHHHHhc------------CCCCCCceE
Confidence 3556665432 333333222899999999999999999999999 999999998
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.40 E-value=4.3e-14 Score=144.83 Aligned_cols=127 Identities=13% Similarity=0.102 Sum_probs=81.0
Q ss_pred hhHHHHHhhc-C-----CCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcce
Q 020346 148 LGLDSLLQRL-R-----DQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKH 221 (327)
Q Consensus 148 ~~l~~l~~~l-~-----g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~ 221 (327)
..++++++.+ + |++++|+||||||||||+++|+| +.+|++|+..
T Consensus 361 ~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~G------------l~~p~~G~~~------------------ 410 (608)
T 3j16_B 361 KTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAG------------ALKPDEGQDI------------------ 410 (608)
T ss_dssp EECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHT------------SSCCSBCCCC------------------
T ss_pred cccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhc------------CCCCCCCcCc------------------
Confidence 3567778776 4 48899999999999999999999 8999999621
Q ss_pred eeEEEEEEEccCCCe----EEeCcc--cCCcc---------ccccCHhHHhhhhHHHHHhcCccccccccccccccccCC
Q 020346 222 TTRHVSLLPLSGGGY----LADTPG--FNQPS---------LLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEP 286 (327)
Q Consensus 222 tt~~i~~v~q~~~~~----i~Dtpg--~~~~~---------l~~~~~~~l~~~~~~~~~~LSgGq~q~~~~~~~~h~~ep 286 (327)
....++++||..... +.+... +.... ++.+...++.+.. ...|||||+||+++|+++ +.+|
T Consensus 411 ~~~~i~~~~q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~---~~~LSGGqkQRv~iAraL-~~~p 486 (608)
T 3j16_B 411 PKLNVSMKPQKIAPKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLRIDDIIDQE---VQHLSGGELQRVAIVLAL-GIPA 486 (608)
T ss_dssp CSCCEEEECSSCCCCCCSBHHHHHHHHCSSTTTSHHHHHHTHHHHTSTTTSSSB---SSSCCHHHHHHHHHHHHT-TSCC
T ss_pred cCCcEEEecccccccCCccHHHHHHHHhhcccccHHHHHHHHHHcCChhhhcCC---hhhCCHHHHHHHHHHHHH-HhCC
Confidence 112477888863211 111100 00000 0000000111111 123999999999999999 9999
Q ss_pred ceEEcccHH------HHHHHHHHHHHHH
Q 020346 287 GCVVKGDWE------RYQYYFQLLDEIR 308 (327)
Q Consensus 287 ~~~v~~~~~------r~~~~~~ll~e~~ 308 (327)
.++|+|+|. ......++++++.
T Consensus 487 ~lLlLDEPT~gLD~~~~~~i~~ll~~l~ 514 (608)
T 3j16_B 487 DIYLIDEPSAYLDSEQRIICSKVIRRFI 514 (608)
T ss_dssp SEEEECCTTTTCCHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHH
Confidence 999999663 4445556666654
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=99.39 E-value=7.8e-15 Score=151.82 Aligned_cols=44 Identities=11% Similarity=0.039 Sum_probs=35.5
Q ss_pred hcCccccccccccccccccCCc--eEEcccH------HHHHHHHHHHHHHHHh
Q 020346 266 MLKANEPAKCSFNNCLHLGEPG--CVVKGDW------ERYQYYFQLLDEIRIR 310 (327)
Q Consensus 266 ~LSgGq~q~~~~~~~~h~~ep~--~~v~~~~------~r~~~~~~ll~e~~~~ 310 (327)
.|||||+||+++++++ +.+|+ ++|+|+| .......+++++++..
T Consensus 202 ~LSGGe~QRv~iArAL-~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~ 253 (670)
T 3ux8_A 202 TLSGGEAQRIRLATQI-GSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDL 253 (670)
T ss_dssp GSCHHHHHHHHHHHHH-HTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHH-hhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHc
Confidence 4999999999999999 88888 9999965 4556666777777543
|
| >2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A | Back alignment and structure |
|---|
Probab=99.37 E-value=3.3e-13 Score=128.51 Aligned_cols=110 Identities=14% Similarity=0.241 Sum_probs=81.5
Q ss_pred CceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccccc
Q 020346 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (327)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~ 215 (327)
++.+.+ | ..+++++++.+ +|+.++|+|+||||||||+|+|+| +++|++|.|.++|.+.-..+
T Consensus 151 ~~~v~f-y--~~~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g------------~~~~~~g~i~i~~~~e~~~~-- 213 (330)
T 2pt7_A 151 YNLLDN-K--EQAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIME------------FIPKEERIISIEDTEEIVFK-- 213 (330)
T ss_dssp TTTSTT-H--HHHHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGG------------GSCTTSCEEEEESSCCCCCS--
T ss_pred cCchhh-H--HHHHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhC------------CCcCCCcEEEECCeeccccc--
Confidence 344444 5 56899999998 899999999999999999999999 99999999999986521111
Q ss_pred CCCcceeeEEEEEEEccCCCeEEeCcccCCccccccCHhHHhhhhHHHHHhcCccccccccccccccccCCceEEcccHH
Q 020346 216 SGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE 295 (327)
Q Consensus 216 ~~~g~~tt~~i~~v~q~~~~~i~Dtpg~~~~~l~~~~~~~l~~~~~~~~~~LSgGq~q~~~~~~~~h~~ep~~~v~~~~~ 295 (327)
. ....+++++ .|||+|+..+++++ ..+|+++++|++.
T Consensus 214 ~-----~~~~i~~~~-------------------------------------ggg~~~r~~la~aL-~~~p~ilildE~~ 250 (330)
T 2pt7_A 214 H-----HKNYTQLFF-------------------------------------GGNITSADCLKSCL-RMRPDRIILGELR 250 (330)
T ss_dssp S-----CSSEEEEEC-------------------------------------BTTBCHHHHHHHHT-TSCCSEEEECCCC
T ss_pred c-----chhEEEEEe-------------------------------------CCChhHHHHHHHHh-hhCCCEEEEcCCC
Confidence 0 122333332 08999999999999 8899999999775
Q ss_pred HHHHHHHHHHHH
Q 020346 296 RYQYYFQLLDEI 307 (327)
Q Consensus 296 r~~~~~~ll~e~ 307 (327)
..+ ..++++.+
T Consensus 251 ~~e-~~~~l~~~ 261 (330)
T 2pt7_A 251 SSE-AYDFYNVL 261 (330)
T ss_dssp STH-HHHHHHHH
T ss_pred hHH-HHHHHHHH
Confidence 422 23344444
|
| >1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.36 E-value=1.7e-14 Score=129.24 Aligned_cols=127 Identities=17% Similarity=0.127 Sum_probs=67.7
Q ss_pred chhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcceeeE
Q 020346 146 SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTR 224 (327)
Q Consensus 146 ~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~tt~ 224 (327)
+...|+++++.+ +|++++|+||||||||||+++|+| ++ | |+|.+ |.++.......+ ...
T Consensus 9 ~~~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g------------~~-p--G~i~~-g~~~~~~~~~~~----~~~ 68 (218)
T 1z6g_A 9 HHSSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLN------------EF-P--NYFYF-SVSCTTRKKREK----EKE 68 (218)
T ss_dssp -------------CCCCEEEECSTTSSHHHHHHHHHH------------HS-T--TTEEE-CCCEECSCCCSS----CCB
T ss_pred ccccccCCceecCCCCEEEEECCCCCCHHHHHHHHHh------------hC-C--CcEEE-eecccCCCCCcc----ccc
Confidence 345789999998 899999999999999999999999 77 6 99999 776654332211 234
Q ss_pred EEEEEEccCCC--------eEEeCcccCCccccccCHhHHhhhhHH----H-HHhcCccccccccc-----cccccccCC
Q 020346 225 HVSLLPLSGGG--------YLADTPGFNQPSLLKVTKQSLAQTFPE----I-KEMLKANEPAKCSF-----NNCLHLGEP 286 (327)
Q Consensus 225 ~i~~v~q~~~~--------~i~Dtpg~~~~~l~~~~~~~l~~~~~~----~-~~~LSgGq~q~~~~-----~~~~h~~ep 286 (327)
.++|++|++.. ..++...+..... ......+...... + ...|||||+||.++ +.++ +..|
T Consensus 69 ~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-g~~~~~i~~~l~~~~~~il~~~lsggq~qR~~i~~~~~~~~l-l~~~ 146 (218)
T 1z6g_A 69 GVDYYFIDKTIFEDKLKNEDFLEYDNYANNFY-GTLKSEYDKAKEQNKICLFEMNINGVKQLKKSTHIKNALYIF-IKPP 146 (218)
T ss_dssp TTTBEECCHHHHHHHHHTTCEEEEEEETTEEE-EEEHHHHHHHHHTTCEEEEEECHHHHHHHTTCSSCCSCEEEE-EECS
T ss_pred CCeEEECCHHHHHHhhhccchhhhhhcccccC-CCcHHHHHHHHhCCCcEEEEecHHHHHHHHHHhcCCCcEEEE-EeCc
Confidence 56677775311 1122111111100 0111111111000 0 01259999999999 4455 7778
Q ss_pred ceEEcccH
Q 020346 287 GCVVKGDW 294 (327)
Q Consensus 287 ~~~v~~~~ 294 (327)
.+.++|++
T Consensus 147 ~~~~Lde~ 154 (218)
T 1z6g_A 147 STDVLLSR 154 (218)
T ss_dssp CHHHHHHH
T ss_pred CHHHHHHH
Confidence 77777644
|
| >2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.32 E-value=9.8e-14 Score=137.85 Aligned_cols=111 Identities=15% Similarity=0.078 Sum_probs=75.4
Q ss_pred HHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCccccccccccccc-c-eeecceeeccccccCCCcceeeEEEEE
Q 020346 152 SLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILG-S-KWFEDQRVGEVSTKSGRGKHTTRHVSL 228 (327)
Q Consensus 152 ~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G-~-i~~~g~~v~~~s~~~~~g~~tt~~i~~ 228 (327)
++++.+ +|++++|+||||||||||+++|+| ++.|++| + |+++|.. ++.+++
T Consensus 130 ~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~G------------l~~p~~G~~pI~vdg~~--------------~~~i~~ 183 (460)
T 2npi_A 130 KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCS------------YALKFNAYQPLYINLDP--------------QQPIFT 183 (460)
T ss_dssp HHHHHSSSCCCEEEEESTTSSHHHHHHHHHH------------TTHHHHCCCCEEEECCT--------------TSCSSS
T ss_pred cCceEeCCCCEEEEECCCCCCHHHHHHHHhC------------cccccCCceeEEEcCCc--------------cCCeee
Confidence 688887 899999999999999999999999 9999999 9 9998821 112233
Q ss_pred EEccCC-------CeEEeCcccCC-------------ccccccCHhHHhhhhHHHHHhcCcccccccccccc--ccccCC
Q 020346 229 LPLSGG-------GYLADTPGFNQ-------------PSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNC--LHLGEP 286 (327)
Q Consensus 229 v~q~~~-------~~i~Dtpg~~~-------------~~l~~~~~~~l~~~~~~~~~~LSgGq~q~~~~~~~--~h~~ep 286 (327)
+||... ..+.++. +.. ..+..+......+ ...|||||+||++++++ + +.+|
T Consensus 184 vpq~~~l~~~~~~~tv~eni-~~~~~~~~~~~~~~~~~ll~~~gl~~~~~-----~~~LSgGq~qrlalAra~rL-~~~p 256 (460)
T 2npi_A 184 VPGCISATPISDILDAQLPT-WGQSLTSGATLLHNKQPMVKNFGLERINE-----NKDLYLECISQLGQVVGQRL-HLDP 256 (460)
T ss_dssp CSSCCEEEECCSCCCTTCTT-CSCBCBSSCCSSCCBCCEECCCCSSSGGG-----CHHHHHHHHHHHHHHHHHHH-HHCH
T ss_pred eccchhhcccccccchhhhh-cccccccCcchHHHHHHHHHHhCCCcccc-----hhhhhHHHHHHHHHHHHHHh-ccCc
Confidence 333321 1111221 110 0112222222222 23499999999999998 8 8999
Q ss_pred ce----EEccc-HH
Q 020346 287 GC----VVKGD-WE 295 (327)
Q Consensus 287 ~~----~v~~~-~~ 295 (327)
.+ +|+|+ |.
T Consensus 257 ~i~~sGLlLDEpPt 270 (460)
T 2npi_A 257 QVRRSGCIVDTPSI 270 (460)
T ss_dssp HHHHSCEEEECCCG
T ss_pred ccCcceEEEeCCcc
Confidence 99 99987 53
|
| >2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=4.9e-13 Score=126.14 Aligned_cols=55 Identities=24% Similarity=0.309 Sum_probs=47.4
Q ss_pred cCCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeec
Q 020346 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205 (327)
Q Consensus 135 ~~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~ 205 (327)
+.++.+.++|. ..+++++++.+ +|++++|+||||||||||+++|+| ++ +|+|...
T Consensus 102 i~~~~vs~~y~-~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~g------------l~---~G~I~~~ 157 (305)
T 2v9p_A 102 FNYQNIELITF-INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIH------------FL---GGSVLSF 157 (305)
T ss_dssp HHHTTCCHHHH-HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHH------------HH---TCEEECG
T ss_pred EEEEEEEEEcC-hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhh------------hc---CceEEEE
Confidence 34566777776 67999999998 899999999999999999999999 77 7888654
|
| >3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=1.1e-12 Score=124.07 Aligned_cols=100 Identities=12% Similarity=0.085 Sum_probs=63.9
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcceeeEEEEEEEccCCC--
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGG-- 235 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~tt~~i~~v~q~~~~-- 235 (327)
+|++++|+|+||||||||+++|.| +++|+.|. ..+++++|++..
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~g------------ll~~~~G~----------------------~~v~~v~qd~~~~~ 134 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQA------------LLARWDHH----------------------PRVDLVTTDGFLYP 134 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH------------HHHTSTTC----------------------CCEEEEEGGGGBCC
T ss_pred CCEEEEEECCCCchHHHHHHHHHh------------hccccCCC----------------------CeEEEEecCccCCc
Confidence 789999999999999999999999 77776542 236788886421
Q ss_pred -eEEeCcccCC-ccc-cccCHhHHhhhhHHHH--------HhcCccccccccccccccccCCceEEcc
Q 020346 236 -YLADTPGFNQ-PSL-LKVTKQSLAQTFPEIK--------EMLKANEPAKCSFNNCLHLGEPGCVVKG 292 (327)
Q Consensus 236 -~i~Dtpg~~~-~~l-~~~~~~~l~~~~~~~~--------~~LSgGq~q~~~~~~~~h~~ep~~~v~~ 292 (327)
++.++.++.. ... .......+......+. ..||+||+||+.++.++ +.+|+++|.|
T Consensus 135 ~t~~e~~~~~~~~g~~~~~d~~~~~~~L~~l~~~~~~~~~~~lS~G~~qRv~~a~al-~~~p~ilIlD 201 (312)
T 3aez_A 135 NAELQRRNLMHRKGFPESYNRRALMRFVTSVKSGSDYACAPVYSHLHYDIIPGAEQV-VRHPDILILE 201 (312)
T ss_dssp HHHHHHTTCTTCTTSGGGBCHHHHHHHHHHHHTTCSCEEEEEEETTTTEEEEEEEEE-ECSCSEEEEE
T ss_pred ccHHHHHHHHHhcCCChHHHHHHHHHHHHHhCCCcccCCcccCChhhhhhhhhHHHh-ccCCCEEEEC
Confidence 1122222211 000 1111122222222221 23899999999999888 8899999966
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=99.27 E-value=1.7e-13 Score=146.36 Aligned_cols=121 Identities=17% Similarity=0.160 Sum_probs=75.4
Q ss_pred eeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCC
Q 020346 139 PLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSG 217 (327)
Q Consensus 139 ~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~ 217 (327)
.+.++|++..+++++++.+ +|++++|+|+||||||||+|+|+| |+| +|.+.. ..
T Consensus 440 ~ls~~yg~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag------------------G~i--~g~~~~----~~- 494 (986)
T 2iw3_A 440 EFSLAYGAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN------------------GQV--DGFPTQ----EE- 494 (986)
T ss_dssp EEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH------------------TCS--TTCCCT----TT-
T ss_pred eEEEEECCEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC------------------CCc--CCCccc----cc-
Confidence 4677788788999999998 999999999999999999999996 111 122110 00
Q ss_pred CcceeeEEEEEEEccC-----CCeEEeCcccCCcc--------ccccCH-hHHhhhhHHHHHhcCccccccccccccccc
Q 020346 218 RGKHTTRHVSLLPLSG-----GGYLADTPGFNQPS--------LLKVTK-QSLAQTFPEIKEMLKANEPAKCSFNNCLHL 283 (327)
Q Consensus 218 ~g~~tt~~i~~v~q~~-----~~~i~Dtpg~~~~~--------l~~~~~-~~l~~~~~~~~~~LSgGq~q~~~~~~~~h~ 283 (327)
. .+++++|+. ..++.+...+.... ++.+.+ ....+.. ...|||||+||+.+++++ +
T Consensus 495 ----~--~~~~v~q~~~~~~~~ltv~e~l~~~~~~~~~~v~~~L~~lgL~~~~~~~~---~~~LSGGqkQRvaLArAL-~ 564 (986)
T 2iw3_A 495 ----C--RTVYVEHDIDGTHSDTSVLDFVFESGVGTKEAIKDKLIEFGFTDEMIAMP---ISALSGGWKMKLALARAV-L 564 (986)
T ss_dssp ----S--CEEETTCCCCCCCTTSBHHHHHHTTCSSCHHHHHHHHHHTTCCHHHHHSB---GGGCCHHHHHHHHHHHHH-H
T ss_pred ----e--eEEEEcccccccccCCcHHHHHHHhhcCHHHHHHHHHHHcCCChhhhcCC---cccCCHHHHHHHHHHHHH-h
Confidence 1 134555532 11222222110000 011111 0111111 234999999999999999 9
Q ss_pred cCCceEEcccH
Q 020346 284 GEPGCVVKGDW 294 (327)
Q Consensus 284 ~ep~~~v~~~~ 294 (327)
.+|+++|+|+|
T Consensus 565 ~~P~lLLLDEP 575 (986)
T 2iw3_A 565 RNADILLLDEP 575 (986)
T ss_dssp TTCSEEEEEST
T ss_pred cCCCEEEEECC
Confidence 99999999965
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=2.8e-12 Score=120.50 Aligned_cols=115 Identities=20% Similarity=0.112 Sum_probs=48.9
Q ss_pred eeeccCcchhhHHHHHhhcCCCEEEEEcCCCCCHHHHHHHHcCCCCCCCccccccc-ccccccceeecceeeccccccCC
Q 020346 139 PLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNW-FEPILGSKWFEDQRVGEVSTKSG 217 (327)
Q Consensus 139 ~~~~s~~~~~~l~~l~~~l~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~-~~p~~G~i~~~g~~v~~~s~~~~ 217 (327)
.++.+|++..+++++++.+ +|+|+||||||||+|+|.| . ..|++| |.++|.++....
T Consensus 3 ~l~~~~~~~~~l~~~~~~I-----~lvG~nG~GKSTLl~~L~g------------~~~~~~~g-i~~~g~~~~~t~---- 60 (301)
T 2qnr_A 3 NLPNQVHRKSVKKGFEFTL-----MVVGESGLGKSTLINSLFL------------TDLYPERV-ISGAAEKIERTV---- 60 (301)
T ss_dssp ---------------CEEE-----EEEEETTSSHHHHHHHHHC-------------------------------------
T ss_pred CCcceECCEEEEcCCCEEE-----EEECCCCCCHHHHHHHHhC------------CCccCCCC-cccCCcccCCcc----
Confidence 3556677778888887765 9999999999999999999 4 678888 887776653210
Q ss_pred CcceeeEEEEEEEccC----CCeEEeCcccCCccc--ccc-C-HhHHhhhhHHHHHhcCccccccccccc
Q 020346 218 RGKHTTRHVSLLPLSG----GGYLADTPGFNQPSL--LKV-T-KQSLAQTFPEIKEMLKANEPAKCSFNN 279 (327)
Q Consensus 218 ~g~~tt~~i~~v~q~~----~~~i~Dtpg~~~~~l--~~~-~-~~~l~~~~~~~~~~LSgGq~q~~~~~~ 279 (327)
....++++++.. ...++||+|+....- +.. . ...+...+......+||||+|++.+++
T Consensus 61 ----~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ar 126 (301)
T 2qnr_A 61 ----QIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNR 126 (301)
T ss_dssp --------CEEEEC---CCEEEEEEEEC-----------CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCC
T ss_pred ----eEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhh
Confidence 123356666653 347899999853211 000 0 111233333445569999999998887
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=99.24 E-value=4.6e-11 Score=117.58 Aligned_cols=108 Identities=29% Similarity=0.413 Sum_probs=75.6
Q ss_pred cccccccEEEEEeecCCCCCCh-HHHHHHHHHHHhcCCCEEEEeecCCCCcHHHHHHHHhhhhhcCC-ceeeccCcchhh
Q 020346 72 PPVANVDHLLLLFSMDQPKLEP-FALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGY-EPLFCSVESKLG 149 (327)
Q Consensus 72 ~~~anvD~lliv~~~~~p~~~~-~~l~r~L~~a~~~~~~~~ivlnK~Dl~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~ 149 (327)
..+.++|.+++|+++..+.... ..+.++| +..++|+++|.||+|+.+... ......+..+++ +.+.+|+.++.+
T Consensus 77 ~~~~~ad~il~V~D~~~~~~~~d~~i~~~l---~~~~~p~ilv~NK~D~~~~~~-~~~~~~~~~lg~~~~~~iSA~~g~g 152 (439)
T 1mky_A 77 NMIREADLVLFVVDGKRGITKEDESLADFL---RKSTVDTILVANKAENLREFE-REVKPELYSLGFGEPIPVSAEHNIN 152 (439)
T ss_dssp HHHTTCSEEEEEEETTTCCCHHHHHHHHHH---HHHTCCEEEEEESCCSHHHHH-HHTHHHHGGGSSCSCEECBTTTTBS
T ss_pred HHHHhCCEEEEEEECCCCCCHHHHHHHHHH---HHcCCCEEEEEeCCCCccccH-HHHHHHHHhcCCCCEEEEeccCCCC
Confidence 4578999999999987643221 2344444 345899999999999864311 111123445777 788899988877
Q ss_pred HHHHHhhc-------C-C----------CEEEEEcCCCCCHHHHHHHHcCCC
Q 020346 150 LDSLLQRL-------R-D----------QTTVIVGPSGVGKSSLINALRSSP 183 (327)
Q Consensus 150 l~~l~~~l-------~-g----------~~v~lvG~sG~GKSTLln~L~g~~ 183 (327)
++++...+ . . -.++|+|+||||||||+|.|+|..
T Consensus 153 v~~L~~~i~~~l~~~~~~~~~~~~~~~~~kvaivG~~gvGKSTLln~l~g~~ 204 (439)
T 1mky_A 153 LDTMLETIIKKLEEKGLDLESKPEITDAIKVAIVGRPNVGKSTLFNAILNKE 204 (439)
T ss_dssp HHHHHHHHHHHHHHTTCCSSSCCCCCSCEEEEEECSTTSSHHHHHHHHHTST
T ss_pred HHHHHHHHHHhcccccccchhccccccCceEEEECCCCCCHHHHHHHHhCCc
Confidence 76654432 1 1 279999999999999999999943
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=2.1e-12 Score=129.91 Aligned_cols=144 Identities=13% Similarity=0.079 Sum_probs=93.6
Q ss_pred chhhHHHHHh-hc-CCCEEEEEcCCCCCHHHHHHH--HcCCCCCCCcccccccccccccceeecceeeccccccCCCcce
Q 020346 146 SKLGLDSLLQ-RL-RDQTTVIVGPSGVGKSSLINA--LRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKH 221 (327)
Q Consensus 146 ~~~~l~~l~~-~l-~g~~v~lvG~sG~GKSTLln~--L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~ 221 (327)
...+|+++++ .+ +|++++|+|+||||||||+++ +.| +.+|++|.|+++|.+.......
T Consensus 24 g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~G------------l~~~~~g~i~v~g~~~~~~~~~------ 85 (525)
T 1tf7_A 24 MIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNG------------IIEFDEPGVFVTFEETPQDIIK------ 85 (525)
T ss_dssp CCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHH------------HHHHCCCEEEEESSSCHHHHHH------
T ss_pred CchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHH------------HHhCCCCEEEEEEeCCHHHHHH------
Confidence 4678999999 87 999999999999999999999 678 8899999999999874221100
Q ss_pred eeEEEEEEEccCC----CeEEeCcccCCccccccCHhHHhhhhHHHHHhcCccccccccccccccccCCceEEcccHHHH
Q 020346 222 TTRHVSLLPLSGG----GYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWERY 297 (327)
Q Consensus 222 tt~~i~~v~q~~~----~~i~Dtpg~~~~~l~~~~~~~l~~~~~~~~~~LSgGq~q~~~~~~~~h~~ep~~~v~~~~~r~ 297 (327)
..+.+++++|+.. ....+... .....+.++..++......+...||+||+|++.++..+ ...|. ...|+...
T Consensus 86 ~~~~~g~~~q~~~~~~~l~~~~~~~-~~~~~~~l~~~~l~~~~~~~~~~LS~g~~~~lilDe~t-~~~~~--~~lD~~~~ 161 (525)
T 1tf7_A 86 NARSFGWDLAKLVDEGKLFILDASP-DPEGQEVVGGFDLSALIERINYAIQKYRARRVSIDSVT-SVFQQ--YDASSVVR 161 (525)
T ss_dssp HHGGGTCCHHHHHHTTSEEEEECCC-CSSCCSCCSSHHHHHHHHHHHHHHHHHTCSEEEEECST-TTSTT--TCCHHHHH
T ss_pred HHHHcCCChHHhhccCcEEEEecCc-ccchhhhhcccCHHHHHHHHHHHHHHcCCCEEEECCHH-HHHHh--cCCHHHHH
Confidence 1233566666531 12222111 00111112233444444555566999999999988766 44554 22356655
Q ss_pred HHHHHHHHHHHHhH
Q 020346 298 QYYFQLLDEIRIRE 311 (327)
Q Consensus 298 ~~~~~ll~e~~~~~ 311 (327)
..+.+++++++..+
T Consensus 162 ~~l~~ll~~l~~~g 175 (525)
T 1tf7_A 162 RELFRLVARLKQIG 175 (525)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCC
Confidence 66777888876543
|
| >4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.20 E-value=2.7e-13 Score=131.57 Aligned_cols=41 Identities=10% Similarity=-0.015 Sum_probs=34.1
Q ss_pred cCccccccccccccccccCC--ceEEcccH------HHHHHHHHHHHHHH
Q 020346 267 LKANEPAKCSFNNCLHLGEP--GCVVKGDW------ERYQYYFQLLDEIR 308 (327)
Q Consensus 267 LSgGq~q~~~~~~~~h~~ep--~~~v~~~~------~r~~~~~~ll~e~~ 308 (327)
|||||+||+.++.++ +.+| .++|+||| ...+.+.++++++.
T Consensus 296 lSgGe~qrl~lA~~l-~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~ 344 (415)
T 4aby_A 296 ASGGELSRVMLAVST-VLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA 344 (415)
T ss_dssp SCHHHHHHHHHHHHH-HHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT
T ss_pred cCHhHHHHHHHHHHH-HhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh
Confidence 799999999999987 8899 99999965 46677777777764
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.15 E-value=2.1e-12 Score=112.38 Aligned_cols=99 Identities=14% Similarity=0.161 Sum_probs=61.4
Q ss_pred EEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcceeeEEEEEEEccCCCeEEeC
Q 020346 161 TTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADT 240 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~tt~~i~~v~q~~~~~i~Dt 240 (327)
.++|+||||||||||+++|+| ++. |.++|.......... ..+.+++++|.... .++
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g------------~l~-----i~~~g~~~~~~~~~~-----~~~~ig~~~~~~~~--~~~ 57 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVE------------RLG-----KRAIGFWTEEVRDPE-----TKKRTGFRIITTEG--KKK 57 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHH------------HHG-----GGEEEEEEEEEC-----------CCEEEEEETTC--CEE
T ss_pred EEEEECCCCCCHHHHHHHHHH------------HhC-----CcCCCEEhhhhcccc-----ccceeEEEeecCcH--HHH
Confidence 689999999999999999999 553 566666553332101 34557888886411 011
Q ss_pred cccCCccccccCH--hHHhhhhHHHHHhcCcccccccccccc-----ccccCCceEEccc
Q 020346 241 PGFNQPSLLKVTK--QSLAQTFPEIKEMLKANEPAKCSFNNC-----LHLGEPGCVVKGD 293 (327)
Q Consensus 241 pg~~~~~l~~~~~--~~l~~~~~~~~~~LSgGq~q~~~~~~~-----~h~~ep~~~v~~~ 293 (327)
. +..+.. .......+ ..|||||+||+.++++ + ..+|+++++|+
T Consensus 58 ~------~~~~~~~~~~~~~~~~---~~lSgG~~qr~~la~aa~~~~l-~~~p~llilDE 107 (178)
T 1ye8_A 58 I------FSSKFFTSKKLVGSYG---VNVQYFEELAIPILERAYREAK-KDRRKVIIIDE 107 (178)
T ss_dssp E------EEETTCCCSSEETTEE---ECHHHHHHHHHHHHHHHHHHHH-HCTTCEEEECC
T ss_pred H------HHhhcCCccccccccc---cCcCHHHHHHHHHHhhcccccc-ccCCCEEEEeC
Confidence 0 000000 00011111 2399999999999985 6 88999999998
|
| >2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.15 E-value=6.4e-11 Score=116.44 Aligned_cols=106 Identities=24% Similarity=0.337 Sum_probs=73.6
Q ss_pred ccccccccEEEEEeecCCCCCChHHHHHHHH-HHHhcCCCEEEEeecCCCCcHHHHHHHHhhhhhcCC-ceeeccCcchh
Q 020346 71 DPPVANVDHLLLLFSMDQPKLEPFALTRFLV-EAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGY-EPLFCSVESKL 148 (327)
Q Consensus 71 r~~~anvD~lliv~~~~~p~~~~~~l~r~L~-~a~~~~~~~~ivlnK~Dl~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~ 148 (327)
...+.++|.+++|+++..+. +.. +..+. ..+..++|+++|.||+|+.+... ....+.++++ +.+.+|+.++.
T Consensus 77 ~~~~~~ad~il~vvD~~~~~-~~~--d~~~~~~l~~~~~pvilv~NK~D~~~~~~---~~~~~~~lg~~~~~~iSA~~g~ 150 (436)
T 2hjg_A 77 EIAMDEADVIIFMVNGREGV-TAA--DEEVAKILYRTKKPVVLAVNKLDNTEMRA---NIYDFYSLGFGEPYPISGTHGL 150 (436)
T ss_dssp HHHHHHCSEEEEEEETTTCS-CHH--HHHHHHHHTTCCSCEEEEEECCCC--------CCCSSGGGSSCCCEECBTTTTB
T ss_pred HHHHHhCCEEEEEEeCCCCC-CHH--HHHHHHHHHHcCCCEEEEEECccCccchh---hHHHHHHcCCCCeEEEeCcCCC
Confidence 34678999999999987653 322 22222 23457899999999999975421 1123445676 78899998888
Q ss_pred hHHHHHhhc----C---------C-CEEEEEcCCCCCHHHHHHHHcCC
Q 020346 149 GLDSLLQRL----R---------D-QTTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 149 ~l~~l~~~l----~---------g-~~v~lvG~sG~GKSTLln~L~g~ 182 (327)
+++++...+ + + -.++|+|.+|||||||+|.|++.
T Consensus 151 gv~~L~~~i~~~l~~~~~~~~~~~~~ki~lvG~~nvGKSSLin~l~~~ 198 (436)
T 2hjg_A 151 GLGDLLDAVAEHFKNIPETKYNEEVIQFCLIGRPNVGKSSLVNAMLGE 198 (436)
T ss_dssp THHHHHHHHHHTGGGCCSSCCCTTCEEEEEECSTTSSHHHHHHHHHTS
T ss_pred ChHHHHHHHHHhcCccccccccccCcEEEEEcCCCCCHHHHHHHHhCC
Confidence 877765442 1 1 37999999999999999999994
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.15 E-value=2e-11 Score=119.81 Aligned_cols=130 Identities=22% Similarity=0.157 Sum_probs=69.2
Q ss_pred cCCceeeccCcchhhHHHHHhhcCCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccc
Q 020346 135 WGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (327)
Q Consensus 135 ~~~~~~~~s~~~~~~l~~l~~~l~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~ 214 (327)
+++..++++|+...+++++++.+ +|+|+||||||||+|+|+| ...|..|. ++..+...+
T Consensus 12 l~~~~l~~~y~~~~vl~~vsf~I-----~lvG~sGaGKSTLln~L~g------------~~~~~~~~---~~~~~~~~~- 70 (418)
T 2qag_C 12 VGFANLPNQVYRKSVKRGFEFTL-----MVVGESGLGKSTLINSLFL------------TDLYSPEY---PGPSHRIKK- 70 (418)
T ss_dssp ---CCCCCCTTTTTCC-CCCEEE-----EEECCTTSSHHHHHHHHTT------------CCCCCCCC---CSCC------
T ss_pred EEEEecceeECCEEEecCCCEEE-----EEECCCCCcHHHHHHHHhC------------CCCCCCCC---CCcccCCcc-
Confidence 56778888898888888887764 9999999999999999999 33333331 122111111
Q ss_pred cCCCcceeeEEEEEEEccCC----CeEEeCcccCCccccccCHhHHhhhhHHHHHhcCccccccccccccccccCCc---
Q 020346 215 KSGRGKHTTRHVSLLPLSGG----GYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPG--- 287 (327)
Q Consensus 215 ~~~~g~~tt~~i~~v~q~~~----~~i~Dtpg~~~~~l~~~~~~~l~~~~~~~~~~LSgGq~q~~~~~~~~h~~ep~--- 287 (327)
.. ....++++++..+ .+++||+|+....-.......+... +...++.++.+++++++++ +.+|.
T Consensus 71 t~-----~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~~i~~~---i~~~~~~~l~qr~~IaRal-~~d~~~~v 141 (418)
T 2qag_C 71 TV-----QVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQPVIDY---IDSKFEDYLNAESRVNRRQ-MPDNRVQC 141 (418)
T ss_dssp CC-----EEEEEECC------CEEEEEEECC-----------CHHHHHH---HHHHHHHHTTTSCC-CCCC-CCCC-CCE
T ss_pred ce-----eeeeEEEEEecCCcccceeeeechhhhhhccchhhHHHHHHH---HHHHHHHHHHHHHHHHHHh-ccCCCeeE
Confidence 00 2244667766543 4789999987542111011122221 2223566678899999887 88888
Q ss_pred eEEcccH
Q 020346 288 CVVKGDW 294 (327)
Q Consensus 288 ~~v~~~~ 294 (327)
|++.++|
T Consensus 142 lL~ldeP 148 (418)
T 2qag_C 142 CLYFIAP 148 (418)
T ss_dssp EEEECCC
T ss_pred EEEEecC
Confidence 6666655
|
| >2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.13 E-value=9e-12 Score=122.99 Aligned_cols=153 Identities=13% Similarity=0.086 Sum_probs=92.1
Q ss_pred cCCceeeccCc-chhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecce---ee
Q 020346 135 WGYEPLFCSVE-SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQ---RV 209 (327)
Q Consensus 135 ~~~~~~~~s~~-~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~---~v 209 (327)
+..+.+.++|. ...+++++ +.+ +|++++|+|+||||||||+++|+| +.+|++|.|.++|+ ++
T Consensus 132 l~~~~v~~~~~tg~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag------------~~~~~~G~i~~~G~r~~ev 198 (438)
T 2dpy_A 132 LQRTPIEHVLDTGVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMAR------------YTRADVIVVGLIGERGREV 198 (438)
T ss_dssp TTSCCCCSBCCCSCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHH------------HSCCSEEEEEEESCCHHHH
T ss_pred eEEeccceecCCCceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhc------------ccCCCeEEEEEeceecHHH
Confidence 34566777786 56799999 887 999999999999999999999999 89999999999998 45
Q ss_pred ccccccCCCcceeeEEEEEEEccCCC-----eEEeCcccCCccccccCHhHHhhhhHHHHHhcCcccccccccccccccc
Q 020346 210 GEVSTKSGRGKHTTRHVSLLPLSGGG-----YLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLG 284 (327)
Q Consensus 210 ~~~s~~~~~g~~tt~~i~~v~q~~~~-----~i~Dtpg~~~~~l~~~~~~~l~~~~~~~~~~LSgGq~q~~~~~~~~h~~ 284 (327)
..............+.+++++|.+.. .+.++..+....... ...+....... ...||+|| |+++++ ++
T Consensus 199 ~~~~~~~~~~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~ae~~~~-~~~~v~~~ld~-l~~lS~g~-qrvslA----l~ 271 (438)
T 2dpy_A 199 KDFIENILGPDGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRD-RGQHVLLIMDS-LTRYAMAQ-REIALA----IG 271 (438)
T ss_dssp HHHHHTTTHHHHHHTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHT-TTCEEEEEEEC-HHHHHHHH-HHHHHH----TT
T ss_pred HHHHHhhccccccCceEEEEECCCCCHHHHHHHHHHHHHHHHHHHh-CCCCHHHHHHh-HHHHHHHH-HHHHHH----hC
Confidence 44321100001145678999985211 001110000000000 00000001111 23489999 899988 67
Q ss_pred CCceEEcccHHHHHHHHHHHHHH
Q 020346 285 EPGCVVKGDWERYQYYFQLLDEI 307 (327)
Q Consensus 285 ep~~~v~~~~~r~~~~~~ll~e~ 307 (327)
+|.+.-.=|+.-+....++++++
T Consensus 272 ~p~~t~glD~~~~~~l~~ll~r~ 294 (438)
T 2dpy_A 272 EPPATKGYPPSVFAKLPALVERA 294 (438)
T ss_dssp CCCCSSSCCTTHHHHHHHHHTTC
T ss_pred CCcccccCCHHHHHHHHHHHHHH
Confidence 88772221455444555555544
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=99.10 E-value=1e-11 Score=128.52 Aligned_cols=34 Identities=26% Similarity=0.435 Sum_probs=30.8
Q ss_pred hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHc
Q 020346 147 KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALR 180 (327)
Q Consensus 147 ~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~ 180 (327)
..+++++++.+ +|++++|+||||||||||+|+|+
T Consensus 335 ~~~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~ 369 (670)
T 3ux8_A 335 EHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVL 369 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTH
T ss_pred ccccccceeEecCCCEEEEEeeCCCCHHHHHHHHH
Confidence 45789999998 99999999999999999999864
|
| >1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A | Back alignment and structure |
|---|
Probab=99.10 E-value=1.6e-11 Score=104.98 Aligned_cols=57 Identities=14% Similarity=0.066 Sum_probs=50.3
Q ss_pred eccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeec
Q 020346 141 FCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (327)
Q Consensus 141 ~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~ 210 (327)
.++|++..+++++++.+ +|++++|+||||||||||+++|+| ++ |++|+|.++|.++.
T Consensus 14 ~~~~g~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g------------~l-~~~G~V~~~g~~i~ 71 (158)
T 1htw_A 14 MLRFGKKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQ------------GI-GHQGNVKSPTYTLV 71 (158)
T ss_dssp HHHHHHHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHH------------HT-TCCSCCCCCTTTCE
T ss_pred HHHHHHHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHH------------hC-CCCCeEEECCEeee
Confidence 34455567899999998 899999999999999999999999 88 99999999988764
|
| >4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=6.7e-13 Score=114.18 Aligned_cols=28 Identities=14% Similarity=-0.094 Sum_probs=25.3
Q ss_pred cCccccccccccccccccCCceEEcccHH
Q 020346 267 LKANEPAKCSFNNCLHLGEPGCVVKGDWE 295 (327)
Q Consensus 267 LSgGq~q~~~~~~~~h~~ep~~~v~~~~~ 295 (327)
.|+||+|++++++++ ..+|.++++|+|.
T Consensus 84 ~s~g~~qrv~iAral-~~~p~~lllDEPt 111 (171)
T 4gp7_A 84 QESARKPLIEMAKDY-HCFPVAVVFNLPE 111 (171)
T ss_dssp SHHHHHHHHHHHHHT-TCEEEEEEECCCH
T ss_pred CHHHHHHHHHHHHHc-CCcEEEEEEeCCH
Confidence 589999999999998 8999999999763
|
| >2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.07 E-value=4.3e-12 Score=109.94 Aligned_cols=111 Identities=12% Similarity=0.019 Sum_probs=59.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHcCCCCCCCccccccccccc---ccceeecceeecccc---ccCCCcceeeEEEEEEEccC
Q 020346 160 QTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPI---LGSKWFEDQRVGEVS---TKSGRGKHTTRHVSLLPLSG 233 (327)
Q Consensus 160 ~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~---~G~i~~~g~~v~~~s---~~~~~g~~tt~~i~~v~q~~ 233 (327)
++++|+|+||||||||+++|++ +++|+ .|.|.++|.++..++ ....+.+.....+.+++|+.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~------------~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~ 70 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMP------------ILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVK 70 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHH------------HHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSE
T ss_pred eEEEEECCCCCCHHHHHHHHHH------------HhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCc
Confidence 5799999999999999999999 99998 899999998865543 11110000110133566642
Q ss_pred CCeEEeCcccCCccccccCHhHHhhh-hHH----HHHhcCccccccccccccccccCCce
Q 020346 234 GGYLADTPGFNQPSLLKVTKQSLAQT-FPE----IKEMLKANEPAKCSFNNCLHLGEPGC 288 (327)
Q Consensus 234 ~~~i~Dtpg~~~~~l~~~~~~~l~~~-~~~----~~~~LSgGq~q~~~~~~~~h~~ep~~ 288 (327)
-.++.+ + .... .....++... +|. +.+.|||||+||+.+++++ +.+|.+
T Consensus 71 ~~~i~~--~--~~~~-~a~l~~~i~~~l~g~dt~i~EglSgGq~qri~lARal-l~~p~i 124 (171)
T 2f1r_A 71 LAFIRR--V--SEEE-GNDLDWIYERYLSDYDLVITEGFSKAGKDRIVVVKKP-EEVEHF 124 (171)
T ss_dssp EEEEEE--C--CHHH-HTCHHHHHHHHTTTCSEEEEESCGGGCCCEEEECSSG-GGGGGG
T ss_pred EEEEec--C--Chhh-hhCHHHHHHhhCCCCCEEEECCcCCCCCcEEEEEecc-cCCCcc
Confidence 222222 0 0000 0011222111 111 1123899999999999988 666654
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=1.5e-11 Score=117.27 Aligned_cols=66 Identities=21% Similarity=0.112 Sum_probs=57.0
Q ss_pred cCCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccc
Q 020346 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV 212 (327)
Q Consensus 135 ~~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~ 212 (327)
+..+.+.++|....+++++++.+ +|++++|+|+||||||||+|+|.| ++.|++|+|.+.+.++...
T Consensus 30 ie~~~~~~~~~~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g------------~~~~~~g~v~i~~~d~~~~ 96 (337)
T 2qm8_A 30 AESRRADHRAAVRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGS------------LLTAAGHKVAVLAVDPSST 96 (337)
T ss_dssp HTCSSHHHHHHHHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHH------------HHHHTTCCEEEEEECGGGG
T ss_pred HeeCCcccccChHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHH------------hhhhCCCEEEEEEEcCccc
Confidence 34555666776678899999997 899999999999999999999999 8999999999999887544
|
| >2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=98.99 E-value=1.2e-10 Score=102.21 Aligned_cols=107 Identities=19% Similarity=0.180 Sum_probs=66.6
Q ss_pred CCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcceeeEEEEEEEccCCCe--
Q 020346 159 DQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGY-- 236 (327)
Q Consensus 159 g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~tt~~i~~v~q~~~~~-- 236 (327)
|++++|+|+||||||||+++|+| +++ ++| |.++|..+..... ..+.+++++|...+.
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g------------~~~-~~G-i~~~g~~~~~~~~-------~~~~ig~~~~~~~g~~~ 59 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASE------------VLK-SSG-VPVDGFYTEEVRQ-------GGRRIGFDVVTLSGTRG 59 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHH------------HHH-HTT-CCCEEEECCEEET-------TSSEEEEEEEETTSCEE
T ss_pred CCEEEEECCCCChHHHHHHHHHh------------hcc-cCC-EEEcCEecchhHh-------hhceEEEEEEeccccee
Confidence 67899999999999999999999 888 999 9999988755432 345688888864221
Q ss_pred EEeCcccCCccccccCHhHHhhhhHHHHHhcCccccccc-cccc---cccccCCceEEccc
Q 020346 237 LADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKC-SFNN---CLHLGEPGCVVKGD 293 (327)
Q Consensus 237 i~Dtpg~~~~~l~~~~~~~l~~~~~~~~~~LSgGq~q~~-~~~~---~~h~~ep~~~v~~~ 293 (327)
.+....+...... .. ..+.. ....+|+||++++ .+.. +. ..+|+++|.|+
T Consensus 60 ~l~~~~~~~~~~~-~~-~~v~~----~~~~ls~~er~~~~~l~~~a~A~-~~~~dvlilDE 113 (189)
T 2i3b_A 60 PLSRVGLEPPPGK-RE-CRVGQ----YVVDLTSFEQLALPVLRNADCSS-GPGQRVCVIDE 113 (189)
T ss_dssp EEEECCCCCCSSS-CC-EESSS----SEECHHHHHTTTTTTTCCCCCCC-SSCCCCEEECC
T ss_pred hhhcccccCCccc-cc-cccce----EEEcchHHHHHHHHHHhhhhHhh-ccCCCEEEEeC
Confidence 1111111110000 00 00000 0112677777665 3333 34 78999999997
|
| >2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=2.8e-10 Score=103.03 Aligned_cols=40 Identities=23% Similarity=0.273 Sum_probs=23.3
Q ss_pred ccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcC
Q 020346 142 CSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 142 ~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g 181 (327)
.|.++..+++++++.+ +|.+++|+||||||||||+++|.+
T Consensus 7 ~~~~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 7 HSSGVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp ----------------CCSEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccCCCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4456677899999998 889999999999999999999998
|
| >1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=1e-10 Score=114.83 Aligned_cols=60 Identities=15% Similarity=0.159 Sum_probs=49.7
Q ss_pred ceeeccCcchhhHHHHHhhcCCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeec
Q 020346 138 EPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (327)
Q Consensus 138 ~~~~~s~~~~~~l~~l~~~l~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~ 210 (327)
+.+.++|.....++++ +.-+|..++|+||||||||||+++|+| +++|++|+|.+.+.++.
T Consensus 147 ~~Lg~~~~~~~~L~~l-~~~~ggii~I~GpnGSGKTTlL~allg------------~l~~~~g~I~~~ed~ie 206 (418)
T 1p9r_A 147 HSLGMTAHNHDNFRRL-IKRPHGIILVTGPTGSGKSTTLYAGLQ------------ELNSSERNILTVEDPIE 206 (418)
T ss_dssp GGSCCCHHHHHHHHHH-HTSSSEEEEEECSTTSCHHHHHHHHHH------------HHCCTTSCEEEEESSCC
T ss_pred HHcCCCHHHHHHHHHH-HHhcCCeEEEECCCCCCHHHHHHHHHh------------hcCCCCCEEEEecccch
Confidence 3444555556678888 445889999999999999999999999 88999999999988764
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.98 E-value=1.4e-10 Score=106.90 Aligned_cols=52 Identities=17% Similarity=0.197 Sum_probs=46.2
Q ss_pred hhHHHHHhhcCCCEEEEEcCCCCCHHHHHHHHcCCCCCCCccccccccccc-ccceeecceeeccc
Q 020346 148 LGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPI-LGSKWFEDQRVGEV 212 (327)
Q Consensus 148 ~~l~~l~~~l~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~-~G~i~~~g~~v~~~ 212 (327)
.++++++ .-+|+.++|+||||||||||+++|+| +++|+ +|+|.++|.++..+
T Consensus 15 ~vl~~i~-i~~g~~v~i~Gp~GsGKSTll~~l~g------------~~~~~~~G~I~~~g~~i~~~ 67 (261)
T 2eyu_A 15 DKVLELC-HRKMGLILVTGPTGSGKSTTIASMID------------YINQTKSYHIITIEDPIEYV 67 (261)
T ss_dssp THHHHGG-GCSSEEEEEECSTTCSHHHHHHHHHH------------HHHHHCCCEEEEEESSCCSC
T ss_pred HHHHHHh-hCCCCEEEEECCCCccHHHHHHHHHH------------hCCCCCCCEEEEcCCcceee
Confidence 4788888 34899999999999999999999999 99998 99999999877544
|
| >4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=1.2e-09 Score=108.00 Aligned_cols=107 Identities=23% Similarity=0.317 Sum_probs=70.1
Q ss_pred ccccccccEEEEEeecCCCCCChHHHHHHHHHHHhcCCCEEEEeecCCCCcHHHHHHHHhhhhhcCC-ceeeccCcchhh
Q 020346 71 DPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGY-EPLFCSVESKLG 149 (327)
Q Consensus 71 r~~~anvD~lliv~~~~~p~~~~~~l~r~L~~a~~~~~~~~ivlnK~Dl~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~ 149 (327)
...+.++|.+++|.+...+ ++... ...+......++|+++|.||+|+.+... ....+..+++ +.+.+|+.+..+
T Consensus 97 ~~~~~~ad~il~VvD~~~~-~~~~d-~~l~~~l~~~~~pvilV~NK~D~~~~~~---~~~e~~~lg~~~~~~iSA~~g~g 171 (456)
T 4dcu_A 97 EIAMDEADVIIFMVNGREG-VTAAD-EEVAKILYRTKKPVVLAVNKLDNTEMRA---NIYDFYSLGFGEPYPISGTHGLG 171 (456)
T ss_dssp HHHHHHCSEEEEEEESSSC-SCHHH-HHHHHHHTTCCSCEEEEEECC------------CCSGGGSSSSEEECCTTTCTT
T ss_pred HhhHhhCCEEEEEEeCCCC-CChHH-HHHHHHHHHcCCCEEEEEECccchhhhh---hHHHHHHcCCCceEEeecccccc
Confidence 3457899999999998754 33221 1222223457899999999999875431 1233445566 567888888777
Q ss_pred HHHHHhhc--------------CCCEEEEEcCCCCCHHHHHHHHcCC
Q 020346 150 LDSLLQRL--------------RDQTTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 150 l~~l~~~l--------------~g~~v~lvG~sG~GKSTLln~L~g~ 182 (327)
++++...+ ....++++|.+|+|||||+|.|.+.
T Consensus 172 v~~L~~~i~~~l~~~~~~~~~~~~~ki~ivG~~~vGKSslin~l~~~ 218 (456)
T 4dcu_A 172 LGDLLDAVAEHFKNIPETKYNEEVIQFCLIGRPNVGKSSLVNAMLGE 218 (456)
T ss_dssp HHHHHHHHHTTGGGSCSSCCCTTCEEEEEECSTTSSHHHHHHHHHTS
T ss_pred hHHHHHHHHhhcccccccccccccceeEEecCCCCCHHHHHHHHhCC
Confidence 77765442 1247899999999999999999984
|
| >3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.96 E-value=2.4e-11 Score=114.35 Aligned_cols=121 Identities=13% Similarity=0.093 Sum_probs=74.7
Q ss_pred HHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcce-eeEEEEEEE
Q 020346 153 LLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKH-TTRHVSLLP 230 (327)
Q Consensus 153 l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~-tt~~i~~v~ 230 (327)
+++.+ +|++++|+||||||||||++.|+| +++|++|+|.++|.++...+........ .+.++++++
T Consensus 93 l~~~~~~g~vi~lvG~nGsGKTTll~~Lag------------~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~ 160 (302)
T 3b9q_A 93 LQLGFRKPAVIMIVGVNGGGKTTSLGKLAH------------RLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVV 160 (302)
T ss_dssp CCCCSSSCEEEEEECCTTSCHHHHHHHHHH------------HHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEEC
T ss_pred cccccCCCcEEEEEcCCCCCHHHHHHHHHH------------HHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEE
Confidence 44444 789999999999999999999999 9999999999999887543210000000 123578888
Q ss_pred ccCC-Ce----EEeCccc------CCccccccCHhHHhhhhHHHHHhcCccccccccccccccccCCc--eEEcc
Q 020346 231 LSGG-GY----LADTPGF------NQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPG--CVVKG 292 (327)
Q Consensus 231 q~~~-~~----i~Dtpg~------~~~~l~~~~~~~l~~~~~~~~~~LSgGq~q~~~~~~~~h~~ep~--~~v~~ 292 (327)
|.++ .. +.|+..+ ....++........ ......|| +||+.+++++ ..+|. ++|+|
T Consensus 161 q~~~~~~~~~~v~e~l~~~~~~~~d~~lldt~gl~~~~---~~~~~eLS---kqr~~iaral-~~~P~e~lLvLD 228 (302)
T 3b9q_A 161 AEGDKAKAATVLSKAVKRGKEEGYDVVLCDTSGRLHTN---YSLMEELI---ACKKAVGKIV-SGAPNEILLVLD 228 (302)
T ss_dssp CC--CCCHHHHHHHHHHHHHHTTCSEEEECCCCCSSCC---HHHHHHHH---HHHHHHHTTS-TTCCSEEEEEEE
T ss_pred ecCCccCHHHHHHHHHHHHHHcCCcchHHhcCCCCcch---hHHHHHHH---HHHHHHHHhh-ccCCCeeEEEEe
Confidence 8643 21 1111100 00011111111111 22233388 8999999988 88999 99988
|
| >1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* | Back alignment and structure |
|---|
Probab=98.93 E-value=1.4e-10 Score=109.28 Aligned_cols=108 Identities=19% Similarity=0.238 Sum_probs=70.4
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcce-eeEEEEEEEccCCC-
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKH-TTRHVSLLPLSGGG- 235 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~-tt~~i~~v~q~~~~- 235 (327)
+|++++|+||||||||||+++|+| +++|++|+|.+.|.++............ .+..+++++|.++.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lag------------ll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~ 168 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGR------------YYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTD 168 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHH------------HHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCC
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH------------HHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCC
Confidence 589999999999999999999999 9999999999999987543210000000 12347788886432
Q ss_pred -------------------eEEeCcccCCccccccCHhHHhhhhHHHHHhcCccccccccccccccccCCce--EEcccH
Q 020346 236 -------------------YLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGC--VVKGDW 294 (327)
Q Consensus 236 -------------------~i~Dtpg~~~~~l~~~~~~~l~~~~~~~~~~LSgGq~q~~~~~~~~h~~ep~~--~v~~~~ 294 (327)
.++||+|.. +........|| +|+..+++++ ..+|.. +++|..
T Consensus 169 p~~~v~~~v~~~~~~~~d~~llDt~G~~-------------~~~~~~~~eLs---~~r~~iaRal-~~~P~~~lLvLDa~ 231 (304)
T 1rj9_A 169 SAALAYDAVQAMKARGYDLLFVDTAGRL-------------HTKHNLMEELK---KVKRAIAKAD-PEEPKEVWLVLDAV 231 (304)
T ss_dssp HHHHHHHHHHHHHHHTCSEEEECCCCCC-------------TTCHHHHHHHH---HHHHHHHHHC-TTCCSEEEEEEETT
T ss_pred HHHHHHHHHHHHHhCCCCEEEecCCCCC-------------CchHHHHHHHH---HHHHHHHHhh-cCCCCeEEEEEcHH
Confidence 123333321 11122222355 6888899888 889993 335643
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.92 E-value=1.3e-09 Score=107.11 Aligned_cols=80 Identities=18% Similarity=0.227 Sum_probs=53.0
Q ss_pred eccCcchhhHHHHHhhc-CCCE--EEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCC
Q 020346 141 FCSVESKLGLDSLLQRL-RDQT--TVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSG 217 (327)
Q Consensus 141 ~~s~~~~~~l~~l~~~l-~g~~--v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~ 217 (327)
.++|++.. ++++++.+ +|++ ++|+|+||||||||+|+|+|.. ++|.++......
T Consensus 22 ~~~y~~~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~--------------------l~g~~~~~~~~~-- 78 (427)
T 2qag_B 22 HVGFDSLP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK--------------------FEGEPATHTQPG-- 78 (427)
T ss_dssp CC-CC--C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC--------------------C-------CCSS--
T ss_pred EEEECCee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc--------------------ccCCcCCCCCcc--
Confidence 56676666 99999998 8999 9999999999999999999921 233333322211
Q ss_pred CcceeeEEEEEEEccCC----CeEEeCcccCCc
Q 020346 218 RGKHTTRHVSLLPLSGG----GYLADTPGFNQP 246 (327)
Q Consensus 218 ~g~~tt~~i~~v~q~~~----~~i~Dtpg~~~~ 246 (327)
.+...+++++|..+ .++.|++++...
T Consensus 79 ---~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~ 108 (427)
T 2qag_B 79 ---VQLQSNTYDLQESNVRLKLTIVSTVGFGDQ 108 (427)
T ss_dssp ---CEEEEEEEEEEC--CEEEEEEEEEECCCC-
T ss_pred ---ceEeeEEEEeecCccccccchhhhhhhhhc
Confidence 14567899999764 478999998753
|
| >2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis} | Back alignment and structure |
|---|
Probab=98.91 E-value=1.4e-09 Score=104.46 Aligned_cols=78 Identities=21% Similarity=0.171 Sum_probs=58.1
Q ss_pred CCceeecc---Ccc--hhhH---------HHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCccccccccccccc
Q 020346 136 GYEPLFCS---VES--KLGL---------DSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILG 200 (327)
Q Consensus 136 ~~~~~~~s---~~~--~~~l---------~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G 200 (327)
.|+.+.++ |.. ..++ +++++.+ +|+.++|+||||||||||+|+|+| +++|++|
T Consensus 137 ~f~~v~f~~~~Y~~~~~~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~------------~~~~~~g 204 (361)
T 2gza_A 137 FFKHVRPMSKSLTPFEQELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQ------------EIPFDQR 204 (361)
T ss_dssp TTSCCCCSCSCCCHHHHHHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHT------------TSCTTSC
T ss_pred CcCccccccccccchhHHHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHh------------cCCCCce
Confidence 45666666 642 3344 8999987 999999999999999999999999 9999999
Q ss_pred ceeecceeeccccccCCCcceeeEEEEEEE-cc
Q 020346 201 SKWFEDQRVGEVSTKSGRGKHTTRHVSLLP-LS 232 (327)
Q Consensus 201 ~i~~~g~~v~~~s~~~~~g~~tt~~i~~v~-q~ 232 (327)
.|.++|.. +..... ....+++++ |.
T Consensus 205 ~I~ie~~~--e~~~~~-----~~~~v~~v~~q~ 230 (361)
T 2gza_A 205 LITIEDVP--ELFLPD-----HPNHVHLFYPSE 230 (361)
T ss_dssp EEEEESSS--CCCCTT-----CSSEEEEECC--
T ss_pred EEEECCcc--ccCccc-----cCCEEEEeecCc
Confidence 99998752 322111 234678887 64
|
| >2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.83 E-value=1.4e-10 Score=111.70 Aligned_cols=121 Identities=13% Similarity=0.116 Sum_probs=74.9
Q ss_pred HHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcce-eeEEEEEEE
Q 020346 153 LLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKH-TTRHVSLLP 230 (327)
Q Consensus 153 l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~-tt~~i~~v~ 230 (327)
+++.+ +|++++|+|+||||||||++.|+| +++|++|+|.++|.++...+........ .+..+++++
T Consensus 150 l~l~~~~g~vi~lvG~nGsGKTTll~~Lag------------~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~ 217 (359)
T 2og2_A 150 LQLGFRKPAVIMIVGVNGGGKTTSLGKLAH------------RLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVV 217 (359)
T ss_dssp CCCCSSSSEEEEEECCTTSCHHHHHHHHHH------------HHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEEC
T ss_pred cceecCCCeEEEEEcCCCChHHHHHHHHHh------------hccccCCEEEEecccccccchhHHHHHHHHhcCeEEEE
Confidence 34444 689999999999999999999999 9999999999999887543210000000 124578888
Q ss_pred ccCC-Ce----EEeCcc------cCCccccccCHhHHhhhhHHHHHhcCccccccccccccccccCCc--eEEcc
Q 020346 231 LSGG-GY----LADTPG------FNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPG--CVVKG 292 (327)
Q Consensus 231 q~~~-~~----i~Dtpg------~~~~~l~~~~~~~l~~~~~~~~~~LSgGq~q~~~~~~~~h~~ep~--~~v~~ 292 (327)
|..+ .. +.|+.. .....++........ ......|| +||+.+++++ ..+|. ++|+|
T Consensus 218 q~~~~~~p~~tv~e~l~~~~~~~~d~~lldt~Gl~~~~---~~~~~eLS---kqr~~iaral-~~~P~e~lLvLD 285 (359)
T 2og2_A 218 AEGDKAKAATVLSKAVKRGKEEGYDVVLCDTSGRLHTN---YSLMEELI---ACKKAVGKIV-SGAPNEILLVLD 285 (359)
T ss_dssp CSSSSCCHHHHHHHHHHHHHHTTCSEEEEECCCCSSCC---HHHHHHHH---HHHHHHHHHS-TTCCSEEEEEEE
T ss_pred ecccccChhhhHHHHHHHHHhCCCHHHHHHhcCCChhh---hhHHHHHH---HHHHHHHHHH-hcCCCceEEEEc
Confidence 8643 21 111110 000011111111111 12223378 8899999888 88999 99988
|
| >1ah9_A IF1, initiation factor 1; ribosome binding, protein-RNA interaction, OB fold; NMR {Escherichia coli} SCOP: b.40.4.5 | Back alignment and structure |
|---|
Probab=98.81 E-value=5.8e-09 Score=77.35 Aligned_cols=59 Identities=24% Similarity=0.247 Sum_probs=48.2
Q ss_pred CeeEEEecCC-CCceeccCCCCcEEEEEEcccccccCCCcccCcEEEEceecccCCceEEe
Q 020346 1 MRVIVQQSEP-SRTSDCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIE 60 (327)
Q Consensus 1 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vGD~V~~~~~~~~~~~~~i~ 60 (327)
|.|+|+++.+ |+|+|..+ +|..+.|.++|+|+++...+.|||+|.++..+.+...|.|+
T Consensus 8 ~~G~Vi~~lg~~~y~V~~~-~g~~~~~~i~Gk~Rk~~i~i~vGD~V~ve~~~~~~~kg~I~ 67 (71)
T 1ah9_A 8 MQGTVLETLPNTMFRVELE-NGHVVTAHISGKMRKNYIRILTGDKVTVELTPYDLSKGRIV 67 (71)
T ss_dssp CCEEEEEECSSSEEEEEET-TSCEEEEEECSSGGGTTCCCCTTCEECCEECSSCTTEEEEC
T ss_pred EEEEEEEEeCCcEEEEEEC-CCCEEEEEEcceEeccCccCCCCCEEEEEEecCCCCEEEEE
Confidence 7899999998 77788543 67899999999999888899999999998654344566664
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=1.9e-10 Score=121.50 Aligned_cols=34 Identities=38% Similarity=0.481 Sum_probs=29.9
Q ss_pred hhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHH-HcC
Q 020346 148 LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINA-LRS 181 (327)
Q Consensus 148 ~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~-L~g 181 (327)
.+++++++.+ +|++++|+|+||||||||++. |.|
T Consensus 511 ~~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g 546 (842)
T 2vf7_A 511 NNLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVD 546 (842)
T ss_dssp TTEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHH
T ss_pred cccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHH
Confidence 3578888887 899999999999999999997 654
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.76 E-value=2.6e-10 Score=105.56 Aligned_cols=123 Identities=13% Similarity=0.062 Sum_probs=71.1
Q ss_pred CcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCccee
Q 020346 144 VESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHT 222 (327)
Q Consensus 144 ~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~t 222 (327)
+.+...++++++.+ +| ++|+||||+|||||+++|++ ...+ |.|.++|.++....... .
T Consensus 30 ~~~~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~------------~~~~--~~i~i~g~~l~~~~~~~-----~ 88 (274)
T 2x8a_A 30 VRNPDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVAN------------ESGL--NFISVKGPELLNMYVGE-----S 88 (274)
T ss_dssp HHSHHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHH------------HTTC--EEEEEETTTTCSSTTHH-----H
T ss_pred hhCHHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHH------------HcCC--CEEEEEcHHHHhhhhhH-----H
Confidence 34566788888887 45 99999999999999999999 5555 67888876653321100 1
Q ss_pred eEEEEEEEcc-----CCCeEEeCcccCCccccccCHhHHhhhhHHHHHhcCccccccccccccccccCCce
Q 020346 223 TRHVSLLPLS-----GGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGC 288 (327)
Q Consensus 223 t~~i~~v~q~-----~~~~i~Dtpg~~~~~l~~~~~~~l~~~~~~~~~~LSgGq~q~~~~~~~~h~~ep~~ 288 (327)
.+.++++++. +...++|..-........-...........+...|||||+|+..|+.++ .+.|..
T Consensus 89 ~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~-tn~p~~ 158 (274)
T 2x8a_A 89 ERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAA-TNRPDI 158 (274)
T ss_dssp HHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEEEEE-ESCGGG
T ss_pred HHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEEee-cCChhh
Confidence 1223333332 1224445543221110000001111223334455999999999998877 777754
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.75 E-value=1.6e-09 Score=115.42 Aligned_cols=45 Identities=13% Similarity=0.118 Sum_probs=34.5
Q ss_pred hcCccccccccccccccccC---CceEEcccH------HHHHHHHHHHHHHHHhH
Q 020346 266 MLKANEPAKCSFNNCLHLGE---PGCVVKGDW------ERYQYYFQLLDEIRIRE 311 (327)
Q Consensus 266 ~LSgGq~q~~~~~~~~h~~e---p~~~v~~~~------~r~~~~~~ll~e~~~~~ 311 (327)
.|||||+||+++|+++ +.+ |.++|+|+| ...+.+.++++++.+.+
T Consensus 805 ~LSGGErQRV~LAraL-~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G 858 (916)
T 3pih_A 805 TLSGGEAQRIKLASEL-RKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRG 858 (916)
T ss_dssp TCCHHHHHHHHHHHHH-TSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHH-hhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcC
Confidence 4999999999999988 554 579999965 45666667777775544
|
| >1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1 | Back alignment and structure |
|---|
Probab=98.74 E-value=6.6e-10 Score=104.88 Aligned_cols=136 Identities=17% Similarity=0.217 Sum_probs=75.7
Q ss_pred CEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccC-----------CCcceeeEEEEE
Q 020346 160 QTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKS-----------GRGKHTTRHVSL 228 (327)
Q Consensus 160 ~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~-----------~~g~~tt~~i~~ 228 (327)
++++|+|+||||||||+|.|.|.... ..--.+.|+.|+|.++|.++....... .++ .....+++
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~----~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~-~~~~~l~~ 79 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHG----YKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSN-ELEDALLD 79 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCC----CCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTS-CHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCC----CcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccH-HHHHHHHH
Confidence 47899999999999999999982100 000023789999999999886542110 000 02223444
Q ss_pred E---EccC----CCeEEeCcccCCccc--cc----------------cCHhHHhhhhHHHHHhcCccccccccccccccc
Q 020346 229 L---PLSG----GGYLADTPGFNQPSL--LK----------------VTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHL 283 (327)
Q Consensus 229 v---~q~~----~~~i~Dtpg~~~~~l--~~----------------~~~~~l~~~~~~~~~~LSgGq~q~~~~~~~~h~ 283 (327)
+ +|.. ...++++.++..+.. .. ++.-++... ......||+||+|+...+..+ +
T Consensus 80 l~~~~q~~~~~~~~~v~E~~~l~~p~~~~~~~~~~~~~~~~~~l~~~l~~vd~~~~-~~~~~~ls~g~~Q~~~ad~il-l 157 (318)
T 1nij_A 80 LLDNLDKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHA-DEQMNQFTIAQSQVGYADRIL-L 157 (318)
T ss_dssp HHHHHHHTSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTH-HHHHHHCHHHHHHHHTCSEEE-E
T ss_pred HHhHHhcCCCCCCEEEEeCCCCCCHHHHHHHHhcCccccCeEEECCEEEEEEHHHH-HHHHhhchHHHHHHHhCCEEE-E
Confidence 4 3432 456778877653210 00 000011111 111124899999998655444 6
Q ss_pred cCCceEEcccHHHHHHHHHHHHHH
Q 020346 284 GEPGCVVKGDWERYQYYFQLLDEI 307 (327)
Q Consensus 284 ~ep~~~v~~~~~r~~~~~~ll~e~ 307 (327)
+.|+.. +++ +...++++++
T Consensus 158 ~k~dl~--de~---~~l~~~l~~l 176 (318)
T 1nij_A 158 TKTDVA--GEA---EKLHERLARI 176 (318)
T ss_dssp ECTTTC--SCT---HHHHHHHHHH
T ss_pred ECcccC--CHH---HHHHHHHHHh
Confidence 788776 554 3444445444
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=1.1e-09 Score=109.08 Aligned_cols=56 Identities=18% Similarity=0.190 Sum_probs=49.2
Q ss_pred chhhHHHHHhhcCCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccc
Q 020346 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (327)
Q Consensus 146 ~~~~l~~l~~~l~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s 213 (327)
+..+++++++.++.++++|+||||||||||+++|+| +++|++|+|.++|.++...+
T Consensus 16 ~~~~l~~vsl~i~~e~~~liG~nGsGKSTLl~~l~G------------l~~p~~G~I~~~g~~~~~~~ 71 (483)
T 3euj_A 16 NWNGFFARTFDFDELVTTLSGGNGAGKSTTMAGFVT------------ALIPDLTLLNFRNTTEAGST 71 (483)
T ss_dssp EETTEEEEEEECCSSEEEEECCTTSSHHHHHHHHHH------------HHCCCTTTCCCCCTTSCSCC
T ss_pred ccccccceEEEEccceEEEECCCCCcHHHHHHHHhc------------CCCCCCCEEEECCEEcccCc
Confidence 455788888888339999999999999999999999 99999999999999886544
|
| >2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A* | Back alignment and structure |
|---|
Probab=98.71 E-value=5.8e-09 Score=99.88 Aligned_cols=145 Identities=17% Similarity=0.124 Sum_probs=86.0
Q ss_pred ceeeccCc-chhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccccc
Q 020346 138 EPLFCSVE-SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (327)
Q Consensus 138 ~~~~~s~~-~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~ 215 (327)
+.+...|. ...+++++ +.+ +|++++|+|+||||||||+++|+| +.+|+.|.|.+.|++..++...
T Consensus 49 ~~l~~~~~tg~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g------------~~~~~~g~i~~~G~~~~ev~~~ 115 (347)
T 2obl_A 49 QVIDQPFILGVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICN------------GASADIIVLALIGERGREVNEF 115 (347)
T ss_dssp CCCCSEECCSCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHH------------HSCCSEEEEEEESCCHHHHHHH
T ss_pred cccceecCCCCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhc------------CCCCCEEEEEEecccHHHHHHH
Confidence 44555565 56789999 887 999999999999999999999999 8899999999988764333210
Q ss_pred CCC-cc-eeeEEEEEEEccCCCeEEeCcccCCccccccCHhHHhhhhH----------HHHHhcCccccccccccccccc
Q 020346 216 SGR-GK-HTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFP----------EIKEMLKANEPAKCSFNNCLHL 283 (327)
Q Consensus 216 ~~~-g~-~tt~~i~~v~q~~~~~i~Dtpg~~~~~l~~~~~~~l~~~~~----------~~~~~LSgGq~q~~~~~~~~h~ 283 (327)
.+. +. ...+.+.++++.+ .|...... .......+...|. +-...||+|| |++.++ +
T Consensus 116 i~~~~~~~~~~~v~~~~~~~------~~~~~r~~-~~~~~~~~ae~~~~~~~~vl~~ld~~~~lS~g~-r~v~la----l 183 (347)
T 2obl_A 116 LALLPQSTLSKCVLVVTTSD------RPALERMK-AAFTATTIAEYFRDQGKNVLLMMDSVTRYARAA-RDVGLA----S 183 (347)
T ss_dssp HTTSCHHHHTTEEEEEECTT------SCHHHHHH-HHHHHHHHHHHHHTTTCEEEEEEETHHHHHHHH-HHHHHH----T
T ss_pred HHhhhhhhhhceEEEEECCC------CCHHHHHH-HHHHHHHHHHHHHhccccHHHHHhhHHHHHHHH-HHHHHH----c
Confidence 000 00 1223455666542 11110000 0000011111111 1123489999 888888 5
Q ss_pred cCCceEEcccHHHHHHHHHHHHHH
Q 020346 284 GEPGCVVKGDWERYQYYFQLLDEI 307 (327)
Q Consensus 284 ~ep~~~v~~~~~r~~~~~~ll~e~ 307 (327)
++|...-.=|+.-+....++++++
T Consensus 184 ~~p~~t~Gldp~~~~~l~~ller~ 207 (347)
T 2obl_A 184 GEPDVRGGFPPSVFSSLPKLLERA 207 (347)
T ss_dssp TCCCCBTTBCHHHHHHHHHHHTTC
T ss_pred CCCCcccCCCHHHHHHHHHHHHHH
Confidence 677763322566555555666554
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=98.71 E-value=3.3e-10 Score=120.50 Aligned_cols=33 Identities=27% Similarity=0.436 Sum_probs=29.6
Q ss_pred hhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHc
Q 020346 148 LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALR 180 (327)
Q Consensus 148 ~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~ 180 (327)
.+++++++.+ .|++++|+|+||||||||++.|+
T Consensus 638 ~~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll 671 (972)
T 2r6f_A 638 HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVL 671 (972)
T ss_dssp SSCCSEEEEEESSSEEECCBCTTSSHHHHHTTTH
T ss_pred cccccceEEEcCCCEEEEEcCCCCCHHHHHHHHH
Confidence 3588888887 89999999999999999999864
|
| >1hr0_W Translation initiation factor; ribosomal subunit, ribosome, IF1; 3.20A {Escherichia coli} SCOP: b.40.4.5 PDB: 1zo1_W | Back alignment and structure |
|---|
Probab=98.68 E-value=6e-09 Score=77.30 Aligned_cols=59 Identities=27% Similarity=0.353 Sum_probs=48.3
Q ss_pred CeeEEEecCC-CCceeccCCCCcEEEEEEcccccccCCCcccCcEEEEceecccCCceEEe
Q 020346 1 MRVIVQQSEP-SRTSDCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIE 60 (327)
Q Consensus 1 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vGD~V~~~~~~~~~~~~~i~ 60 (327)
|.|+|+++.+ |+|+|..+ +|..+.|.++|+|++++..+.|||+|.++..+.+...|.|.
T Consensus 9 ~~G~Vi~~lg~~~y~V~~~-~g~~~~~~i~Gk~Rk~~i~i~~GD~V~ve~~~~~~~kg~I~ 68 (71)
T 1hr0_W 9 TEGVVTEALPNATFRVKLD-SGPEILAYISGKMRMHYIRILPGDRVVVEITPYDPTRGRIV 68 (71)
T ss_dssp CEEECCCCCTTTBCCCEES-SSCBCCCEECHHHHHTCCCCCTTCEEEEECCTTCTTCCEEC
T ss_pred EEEEEEEEeCCcEEEEEEC-CCCEEEEEEcceEeccCcCCCCCCEEEEEEEcCCCCEEEEE
Confidence 7899999998 77788543 57889999999999888999999999998754344566664
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=98.68 E-value=7.7e-09 Score=89.96 Aligned_cols=42 Identities=21% Similarity=0.294 Sum_probs=30.5
Q ss_pred CceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcC
Q 020346 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g 181 (327)
++.+.++|+. .++++ +.+ +|..++|+|+||||||||+|.|+|
T Consensus 6 ~~~~~~~~~~-~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g 48 (210)
T 1pui_A 6 YQQTHFVMSA-PDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTN 48 (210)
T ss_dssp -----CEEEE-SSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCC
T ss_pred hhhhhheeec-CCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhC
Confidence 4455566653 56666 444 788999999999999999999999
|
| >3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B | Back alignment and structure |
|---|
Probab=98.68 E-value=1.3e-08 Score=104.16 Aligned_cols=58 Identities=19% Similarity=0.085 Sum_probs=36.9
Q ss_pred EEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccc-cccceeecceeeccccccCCCcceeeEEEEEEEcc
Q 020346 161 TTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEP-ILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLS 232 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p-~~G~i~~~g~~v~~~s~~~~~g~~tt~~i~~v~q~ 232 (327)
.++|+|+||||||||+|+|+| ++.| ++|.|+++|.++....... ....+..+++++|.
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~G------------l~~P~~sG~vt~~g~~i~~~~~~~--~~~~~~~i~~v~Q~ 105 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSG------------VALPRGSGIVTRCPLVLKLKKLVN--EDKWRGKVSYQDYE 105 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHS------------CC-------CCCSCEEEEEEECSS--SSCCEEEESCC---
T ss_pred eEEEECCCCChHHHHHHHHhC------------CCCCCCCCeEEEcCEEEEEecCCc--cccceeEEeeeccc
Confidence 499999999999999999999 7778 8999999999864332111 11255667777653
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 | Back alignment and structure |
|---|
Probab=98.65 E-value=9.7e-09 Score=100.66 Aligned_cols=112 Identities=21% Similarity=0.215 Sum_probs=69.7
Q ss_pred HHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcceeeEEEEEE
Q 020346 151 DSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLL 229 (327)
Q Consensus 151 ~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~tt~~i~~v 229 (327)
+++++.+ .+..++|||+||||||||||+|++.. | .+.+.+... ....++++
T Consensus 148 ~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~-------------~-----~i~~~~ftT----------l~p~~G~V 199 (416)
T 1udx_A 148 RRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAH-------------P-----KIAPYPFTT----------LSPNLGVV 199 (416)
T ss_dssp EEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSC-------------C-----EECCCTTCS----------SCCEEEEE
T ss_pred eeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCC-------------c-----cccCcccce----------ecceeeEE
Confidence 4566666 68899999999999999999999921 1 111111111 22346677
Q ss_pred EccC--CCeEEeCcccCCccccc--cCHhHHh------------hhhHHHHHhcCccccccccccccccccCCceEEc
Q 020346 230 PLSG--GGYLADTPGFNQPSLLK--VTKQSLA------------QTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVK 291 (327)
Q Consensus 230 ~q~~--~~~i~Dtpg~~~~~l~~--~~~~~l~------------~~~~~~~~~LSgGq~q~~~~~~~~h~~ep~~~v~ 291 (327)
+++. ...+.|+||+....... +...-+. ....+....||+|++|+..++.++ ...|.++|+
T Consensus 200 ~~~~~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~~lL~vvDls~~~~~~ls~g~~el~~la~aL-~~~P~ILVl 276 (416)
T 1udx_A 200 EVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPAL-LRRPSLVAL 276 (416)
T ss_dssp ECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSSEEEEEEETTSCHHHHHHHHHHHHHHHCHHH-HHSCEEEEE
T ss_pred EecCcceEEEEeccccccchhhhhhhhHHHHHHHHHHHhhhEEeCCccCCHHHHHHHHHHHHHHhHHh-hcCCEEEEE
Confidence 7753 35788999975321110 1100000 000222344899999999998877 788999884
|
| >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 | Back alignment and structure |
|---|
Probab=98.60 E-value=5.2e-10 Score=107.27 Aligned_cols=35 Identities=31% Similarity=0.480 Sum_probs=33.3
Q ss_pred CCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccc----cceeec
Q 020346 159 DQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPIL----GSKWFE 205 (327)
Q Consensus 159 g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~----G~i~~~ 205 (327)
|+.++|+|+||||||||+++|+| +++|++ |+|+++
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~g------------l~~~~~~~e~G~i~i~ 208 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAA------------VFNTTSAWEYGREFVF 208 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHH------------HTTCEEECCTTHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHH------------HhCCCcchhhHHHHHH
Confidence 89999999999999999999999 999999 998875
|
| >1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=98.60 E-value=6.2e-09 Score=98.14 Aligned_cols=43 Identities=16% Similarity=0.138 Sum_probs=33.0
Q ss_pred HhcCcccccccccccccc---ccCCceEEcccH------HHHHHHHHHHHHH
Q 020346 265 EMLKANEPAKCSFNNCLH---LGEPGCVVKGDW------ERYQYYFQLLDEI 307 (327)
Q Consensus 265 ~~LSgGq~q~~~~~~~~h---~~ep~~~v~~~~------~r~~~~~~ll~e~ 307 (327)
..||+||+|++.++.++- +.+|.++|+||| ...+.+.++++++
T Consensus 218 ~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~ 269 (322)
T 1e69_A 218 SLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKEN 269 (322)
T ss_dssp GGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHH
T ss_pred hhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh
Confidence 359999999999998773 268899999854 4666666677665
|
| >1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A | Back alignment and structure |
|---|
Probab=98.56 E-value=1.7e-08 Score=88.82 Aligned_cols=32 Identities=34% Similarity=0.514 Sum_probs=23.7
Q ss_pred hhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcC
Q 020346 148 LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 148 ~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g 181 (327)
.++++ ..+ +|++++|+||||||||||+|+|+|
T Consensus 10 ~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~g 42 (207)
T 1znw_A 10 PTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRE 42 (207)
T ss_dssp -----------CCCEEEEECSTTSSHHHHHHHHHH
T ss_pred cCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHh
Confidence 34555 344 899999999999999999999999
|
| >1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* | Back alignment and structure |
|---|
Probab=98.55 E-value=1.9e-08 Score=94.31 Aligned_cols=61 Identities=16% Similarity=0.020 Sum_probs=49.0
Q ss_pred cCCceeeccCcchhhHHHHHhhc--------------------CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCccccccc
Q 020346 135 WGYEPLFCSVESKLGLDSLLQRL--------------------RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNW 194 (327)
Q Consensus 135 ~~~~~~~~s~~~~~~l~~l~~~l--------------------~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~ 194 (327)
+.++.+...| .++++++++.+ +|++++|+|+||||||||+++|.| +
T Consensus 38 i~~~~v~~~y--~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~------------~ 103 (308)
T 1sq5_A 38 LSLEEVAEIY--LPLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQA------------L 103 (308)
T ss_dssp CCHHHHHHTH--HHHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHH------------H
T ss_pred cchHhHHHHH--HHHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHH------------H
Confidence 4455666666 35677777654 578999999999999999999999 8
Q ss_pred cc--ccccceee---cceee
Q 020346 195 FE--PILGSKWF---EDQRV 209 (327)
Q Consensus 195 ~~--p~~G~i~~---~g~~v 209 (327)
+. |++|+|.+ +|...
T Consensus 104 l~~~~~~G~i~vi~~d~~~~ 123 (308)
T 1sq5_A 104 LSRWPEHRRVELITTDGFLH 123 (308)
T ss_dssp HTTSTTCCCEEEEEGGGGBC
T ss_pred HhhCCCCCeEEEEecCCccC
Confidence 78 99999998 77653
|
| >3i4o_A Translation initiation factor IF-1; cytoplasm, protein biosynthesis; 1.47A {Mycobacterium tuberculosis} SCOP: b.40.4.5 | Back alignment and structure |
|---|
Probab=98.55 E-value=5.5e-08 Score=73.36 Aligned_cols=59 Identities=22% Similarity=0.218 Sum_probs=47.5
Q ss_pred CeeEEEecCCCC-ceeccCCCCcEEEEEEcccccccCCCcccCcEEEEceecccCCceEEe
Q 020346 1 MRVIVQQSEPSR-TSDCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIE 60 (327)
Q Consensus 1 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~vGD~V~~~~~~~~~~~~~i~ 60 (327)
|.|+|+|+.|+. |+|.-+ +|.++.|.++|++++++..+.+||+|.++..+.+..+|.|.
T Consensus 16 ~~G~Vik~l~n~~f~V~l~-nG~~~~c~i~GK~Rk~~I~Il~GD~V~ve~~~yd~~kgrIi 75 (79)
T 3i4o_A 16 VEGRVVEPLPNAMFRIELE-NGHKVLAHISGKMRQHYIRILPEDRVVVELSPYDLSRGRIV 75 (79)
T ss_dssp EEEEEEEEETTTEEEEEET-TSCEEEEEECHHHHHTTCCCCTTCEEEEEEETTEEEEEEEE
T ss_pred EEEEEEEEcCCCEEEEEeC-CCCEEEEEeCcceecCCccCCCCCEEEEEECccCCCcEEEE
Confidence 689999998554 567644 78899999999999988999999999999876554555543
|
| >2oqk_A Putative translation initiation factor EIF-1A; malaria, eukaryotic initiation facto SGC, structural genomics; 1.80A {Cryptosporidium parvum iowa II} | Back alignment and structure |
|---|
Probab=98.55 E-value=4.5e-08 Score=79.52 Aligned_cols=65 Identities=28% Similarity=0.281 Sum_probs=55.0
Q ss_pred CeeEEEecCC-CCceeccCCCCcEEEEEEcccccccCCCcccCcEEEEceecccCCceEEeeeccccc
Q 020346 1 MRVIVQQSEP-SRTSDCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRST 67 (327)
Q Consensus 1 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vGD~V~~~~~~~~~~~~~i~~i~~R~~ 67 (327)
|.|+|+++.+ |+|+|.. .+|..+.|.++|+|++ ...+.+||+|.++..+.+...|.|..+++|..
T Consensus 34 ~~G~Vi~~lgn~~y~V~~-~dG~~~l~~i~GK~Rk-~I~i~~GD~V~ve~~~~~~~kG~I~~~~~r~~ 99 (117)
T 2oqk_A 34 EYGQVQRMLGNGRLDAYC-FDGQKRLCHIRGKMRK-KVWVNPGDIVLVSLRDFQDSKGDIILKYTPDE 99 (117)
T ss_dssp EEEEEEEEEETTEEEEEE-TTSCEEEEECCHHHHH-HSCCCTTCEEEEEECTTCTTEEEEEEECCHHH
T ss_pred EEEEEEEEcCCCEEEEEe-CCCCEEEEEEcCceec-CCcCCCCCEEEEEEEcCCCCeEEEEEEechHH
Confidence 6799999998 5667743 3688999999999998 88899999999998755566899999999863
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.51 E-value=1.8e-08 Score=96.25 Aligned_cols=76 Identities=18% Similarity=0.153 Sum_probs=49.3
Q ss_pred cCCCEEEEeecCCCCcHHHHHHHHhhhhhc--CCceeeccCcchhhHHHHHh-----------------h--------cC
Q 020346 106 TGIPLTLALNKVELVDEEVLNTWKSRLHTW--GYEPLFCSVESKLGLDSLLQ-----------------R--------LR 158 (327)
Q Consensus 106 ~~~~~~ivlnK~Dl~~~~~~~~~~~~~~~~--~~~~~~~s~~~~~~l~~l~~-----------------~--------l~ 158 (327)
..++..++|||+|+.++.....|..+++.+ +......+.....+...+.. . ..
T Consensus 87 ~~k~~~~~Lnk~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~ 166 (357)
T 2e87_A 87 DRDTFHKAMAGIDWAIRIIRELEERYVERIRYSNDPNEIAELRRQFYGRVASVLRDIDDRLRYLNKAREVLKDLPVVDLE 166 (357)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHGGGSCCCCSS
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCCC
Confidence 345666899999999988877887776653 33322222211211111110 0 13
Q ss_pred CCEEEEEcCCCCCHHHHHHHHcC
Q 020346 159 DQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 159 g~~v~lvG~sG~GKSTLln~L~g 181 (327)
..+++|+|+||||||||+|.|.+
T Consensus 167 ~~~v~lvG~~gvGKSTLin~L~~ 189 (357)
T 2e87_A 167 IPTVVIAGHPNVGKSTLLKALTT 189 (357)
T ss_dssp SCEEEEECSTTSSHHHHHHHHCS
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999999999
|
| >3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* | Back alignment and structure |
|---|
Probab=98.47 E-value=4.1e-08 Score=85.97 Aligned_cols=24 Identities=29% Similarity=0.389 Sum_probs=23.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcC
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g 181 (327)
+|++++|+|+||||||||+++|.|
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 688999999999999999999999
|
| >1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* | Back alignment and structure |
|---|
Probab=98.44 E-value=6.8e-08 Score=86.51 Aligned_cols=40 Identities=30% Similarity=0.265 Sum_probs=34.9
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccc--cccceeecceee
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEP--ILGSKWFEDQRV 209 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p--~~G~i~~~g~~v 209 (327)
+|+.++|+||||||||||+++|+| +++| ..|+|.+.+.+.
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g------------~~~p~~~~g~v~~ttr~~ 56 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLK------------TQPLYDTQVSVSHTTRQP 56 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH------------HSCTTTEEECCCEECSCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhc------------cCCCCceEEEEEecCCCC
Confidence 799999999999999999999999 7775 788888776543
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=98.44 E-value=9.3e-08 Score=82.12 Aligned_cols=40 Identities=23% Similarity=0.350 Sum_probs=35.4
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecc
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~ 211 (327)
+|++++|+|+||||||||+++|++ . |+.|.|++++.++..
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~------------~--~~~g~i~i~~d~~~~ 47 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALAN------------L--PGVPKVHFHSDDLWG 47 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHT------------C--SSSCEEEECTTHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHh------------c--cCCCeEEEcccchhh
Confidence 789999999999999999999999 4 778999998876543
|
| >2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 | Back alignment and structure |
|---|
Probab=98.43 E-value=1.3e-07 Score=95.04 Aligned_cols=50 Identities=24% Similarity=0.329 Sum_probs=44.8
Q ss_pred hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeeccee
Q 020346 147 KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQR 208 (327)
Q Consensus 147 ~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~ 208 (327)
..+++++++.+ +|+.++|+||||||||||+|+|+| +++|++|.|.++|..
T Consensus 247 ~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~------------~i~~~~giitied~~ 297 (511)
T 2oap_1 247 SGVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMM------------FIPPDAKVVSIEDTR 297 (511)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGG------------GSCTTCCEEEEESSC
T ss_pred HHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHh------------hCCCCCCEEEEcCcc
Confidence 45678888877 889999999999999999999999 889999999998864
|
| >3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* | Back alignment and structure |
|---|
Probab=98.42 E-value=7.7e-08 Score=92.40 Aligned_cols=45 Identities=16% Similarity=0.315 Sum_probs=34.7
Q ss_pred hHHHHHhhcCCCEEEEEcCCCCCHHHHHHHHcCCCCCCCccccccccccc-ccceeecc
Q 020346 149 GLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPI-LGSKWFED 206 (327)
Q Consensus 149 ~l~~l~~~l~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~-~G~i~~~g 206 (327)
.+.++ ...+|..++|+||||||||||+++|+| +++|+ .|.|...+
T Consensus 114 ~l~~l-~~~~~g~i~I~GptGSGKTTlL~~l~g------------~~~~~~~~~i~t~e 159 (356)
T 3jvv_A 114 VFKRV-SDVPRGLVLVTGPTGSGKSTTLAAMLD------------YLNNTKYHHILTIE 159 (356)
T ss_dssp HHHHH-HHCSSEEEEEECSTTSCHHHHHHHHHH------------HHHHHCCCEEEEEE
T ss_pred HHHHH-HhCCCCEEEEECCCCCCHHHHHHHHHh------------cccCCCCcEEEEcc
Confidence 45554 223778999999999999999999999 88887 45555433
|
| >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=98.42 E-value=6.3e-08 Score=84.85 Aligned_cols=24 Identities=42% Similarity=0.693 Sum_probs=21.5
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcC
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g 181 (327)
+|+.++|+||||||||||+|+|+|
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 578999999999999999999998
|
| >3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=98.41 E-value=6.9e-08 Score=86.10 Aligned_cols=35 Identities=23% Similarity=0.191 Sum_probs=21.3
Q ss_pred hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHc-C
Q 020346 147 KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALR-S 181 (327)
Q Consensus 147 ~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~-g 181 (327)
.+..+++++.+ +|++++|+||||||||||+++|+ +
T Consensus 14 ~~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~ 50 (231)
T 3lnc_A 14 AQTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEK 50 (231)
T ss_dssp --------CCEECCCEEEEECSCC----CHHHHHHC-
T ss_pred hcccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhc
Confidence 44567888887 89999999999999999999999 8
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=98.40 E-value=7.6e-08 Score=91.42 Aligned_cols=43 Identities=21% Similarity=0.254 Sum_probs=40.0
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccc
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV 212 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~ 212 (327)
+|++++|+||||||||||++.|+| +++|+.|+|.+.|.++...
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag------------~l~~~~g~V~l~g~D~~r~ 170 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLAN------------WLKNHGFSVVIAASDTFRA 170 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH------------HHHHTTCCEEEEEECCSST
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH------------HHHhcCCEEEEEeeccccc
Confidence 689999999999999999999999 9999999999999987543
|
| >3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=98.40 E-value=8.3e-08 Score=83.25 Aligned_cols=24 Identities=42% Similarity=0.668 Sum_probs=23.4
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcC
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g 181 (327)
+|++++|+||||||||||+++|+|
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~~L~~ 29 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVRALVK 29 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECcCCCCHHHHHHHHHh
Confidence 799999999999999999999999
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* | Back alignment and structure |
|---|
Probab=98.39 E-value=3.3e-09 Score=95.91 Aligned_cols=122 Identities=15% Similarity=0.090 Sum_probs=67.6
Q ss_pred cchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcceee
Q 020346 145 ESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTT 223 (327)
Q Consensus 145 ~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~tt 223 (327)
.....++++++.+ +| ++|+||||+|||||+++|++ ... .|.+.+++.++....... ..
T Consensus 36 ~~~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~------------~~~--~~~i~~~~~~~~~~~~~~-----~~ 94 (254)
T 1ixz_A 36 KNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAG------------EAR--VPFITASGSDFVEMFVGV-----GA 94 (254)
T ss_dssp HCHHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHH------------HTT--CCEEEEEHHHHHHSCTTH-----HH
T ss_pred HCHHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHH------------HhC--CCEEEeeHHHHHHHHhhH-----HH
Confidence 3456778887776 44 99999999999999999998 332 677777776543221100 11
Q ss_pred EEEEEEEccC-----CCeEEeCcc-cCCccccc--cCHhHHhhhhHHHHHhcCccccccccccccccccCCce
Q 020346 224 RHVSLLPLSG-----GGYLADTPG-FNQPSLLK--VTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGC 288 (327)
Q Consensus 224 ~~i~~v~q~~-----~~~i~Dtpg-~~~~~l~~--~~~~~l~~~~~~~~~~LSgGq~q~~~~~~~~h~~ep~~ 288 (327)
..+..+++.. ...++|... +....-.. ...........++...|||||+|+..++.++ .+.|..
T Consensus 95 ~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~~a~-t~~p~~ 166 (254)
T 1ixz_A 95 ARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAA-TNRPDI 166 (254)
T ss_dssp HHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEEEE-ESCGGG
T ss_pred HHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCEEEEEc-cCCchh
Confidence 1122233321 123445431 11000000 0011222333445556999999998888776 666644
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=98.37 E-value=7.5e-09 Score=95.10 Aligned_cols=122 Identities=15% Similarity=0.090 Sum_probs=68.7
Q ss_pred cchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcceee
Q 020346 145 ESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTT 223 (327)
Q Consensus 145 ~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~tt 223 (327)
.....++++++.+ +| ++|+||||+|||||+++|++ ... .|.|.+++.++....... ..
T Consensus 60 ~~~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~------------~~~--~~~i~~~~~~~~~~~~~~-----~~ 118 (278)
T 1iy2_A 60 KNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAG------------EAR--VPFITASGSDFVEMFVGV-----GA 118 (278)
T ss_dssp HCHHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHH------------HTT--CCEEEEEHHHHHHSTTTH-----HH
T ss_pred HCHHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHH------------HcC--CCEEEecHHHHHHHHhhH-----HH
Confidence 3456778887777 44 99999999999999999998 332 677888776543321110 11
Q ss_pred EEEEEEEccC-----CCeEEeCcc-cCCccccc--cCHhHHhhhhHHHHHhcCccccccccccccccccCCce
Q 020346 224 RHVSLLPLSG-----GGYLADTPG-FNQPSLLK--VTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGC 288 (327)
Q Consensus 224 ~~i~~v~q~~-----~~~i~Dtpg-~~~~~l~~--~~~~~l~~~~~~~~~~LSgGq~q~~~~~~~~h~~ep~~ 288 (327)
..+..+++.. ...++|... +....... ............+...|||||+|+..++.++ .+.|..
T Consensus 119 ~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~~i~~a~-t~~p~~ 190 (278)
T 1iy2_A 119 ARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAA-TNRPDI 190 (278)
T ss_dssp HHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTCCEEEEEE-ESCTTS
T ss_pred HHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCCCEEEEEe-cCCchh
Confidence 1122233321 223445432 11000000 0011222333445556999999998888777 666754
|
| >2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A | Back alignment and structure |
|---|
Probab=98.37 E-value=5.8e-08 Score=96.87 Aligned_cols=64 Identities=17% Similarity=0.168 Sum_probs=46.6
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccc-cCCCcceeeEEEEEEEccC
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST-KSGRGKHTTRHVSLLPLSG 233 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~-~~~~g~~tt~~i~~v~q~~ 233 (327)
+|++++|+|+||||||||+++|+| ++.|+.|+|.+++.++..... ...+....++.+++++|..
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAg------------ll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~ 356 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLAR------------QFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHT 356 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHH------------HHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCST
T ss_pred CCeEEEEECCCcccHHHHHHHHHH------------HhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEeccc
Confidence 689999999999999999999999 999999999998777643210 0000000234578888764
|
| >1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=98.36 E-value=1.5e-08 Score=91.59 Aligned_cols=61 Identities=23% Similarity=0.278 Sum_probs=36.7
Q ss_pred CEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccC-CCcc--eeeEEEEEEEcc
Q 020346 160 QTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKS-GRGK--HTTRHVSLLPLS 232 (327)
Q Consensus 160 ~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~-~~g~--~tt~~i~~v~q~ 232 (327)
++++|+||||||||||+++|+| ++.|++|.|.++|.++...+... .... .....+++++|.
T Consensus 28 ~~~~i~GpnGsGKSTll~~i~g------------~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 28 LVTTLSGGNGAGKSTTMAAFVT------------ALIPDLTLLHFRNTTEAGATSGSRDKGLHGKLKAGVCYSMLD 91 (227)
T ss_dssp HHHHHHSCCSHHHHHHHHHHHH------------HHSCCTTTC------------------CGGGBCSSEEEEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHhc------------ccccCCCeEEECCEEcccCCccccccchhhHhhcCcEEEEEe
Confidence 6779999999999999999999 89999999999998874332210 0000 124567888764
|
| >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} | Back alignment and structure |
|---|
Probab=98.32 E-value=1.3e-07 Score=83.18 Aligned_cols=40 Identities=23% Similarity=0.252 Sum_probs=32.9
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccc---cccceeecceee
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEP---ILGSKWFEDQRV 209 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p---~~G~i~~~g~~v 209 (327)
+|++++|+||||||||||+++|.| +++| +.|.|.++|..+
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~~------------~~~~~g~~~g~v~~d~~~~ 63 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLAA------------ALSAQGLPAEVVPMDGFHL 63 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHH------------HHHHTTCCEEEEESGGGBC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH------------HHhhcCCceEEEecCCCcC
Confidence 689999999999999999999999 7775 356666665543
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=98.27 E-value=6.3e-08 Score=97.24 Aligned_cols=24 Identities=25% Similarity=0.545 Sum_probs=23.6
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcC
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g 181 (327)
+|++++|+|+||+|||||++.|++
T Consensus 280 ~G~i~~i~G~~GsGKSTLl~~l~g 303 (525)
T 1tf7_A 280 KDSIILATGATGTGKTLLVSRFVE 303 (525)
T ss_dssp SSCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHH
Confidence 899999999999999999999999
|
| >4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* | Back alignment and structure |
|---|
Probab=98.26 E-value=4e-07 Score=80.03 Aligned_cols=24 Identities=29% Similarity=0.439 Sum_probs=23.4
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcC
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g 181 (327)
+|++++|+||||||||||+++|+|
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g 47 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAV 47 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 899999999999999999999998
|
| >3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A | Back alignment and structure |
|---|
Probab=98.26 E-value=1.6e-06 Score=73.56 Aligned_cols=58 Identities=36% Similarity=0.523 Sum_probs=38.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcceeeEEEEEEEccCCCeEEe
Q 020346 160 QTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLAD 239 (327)
Q Consensus 160 ~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~tt~~i~~v~q~~~~~i~D 239 (327)
-.++|+|++|||||||+|.|.+... ...+...+ ++....+........++|
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~~~-------------------------~~~~~~~~----~t~~~~~~~~~~~~~i~D 74 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNRKI-------------------------AFVSKTPG----KTRSINFYLVNSKYYFVD 74 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTSCC-------------------------SCCCSSCC----CCCCEEEEEETTTEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHcCcc-------------------------ccccCCCC----CccCeEEEEECCcEEEEE
Confidence 4799999999999999999998321 11111111 344444444555678999
Q ss_pred CcccCCc
Q 020346 240 TPGFNQP 246 (327)
Q Consensus 240 tpg~~~~ 246 (327)
|||+...
T Consensus 75 t~G~~~~ 81 (195)
T 3pqc_A 75 LPGYGYA 81 (195)
T ss_dssp CCCBSSS
T ss_pred CCCCccc
Confidence 9997654
|
| >1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A* | Back alignment and structure |
|---|
Probab=98.26 E-value=1.3e-07 Score=99.06 Aligned_cols=111 Identities=14% Similarity=0.066 Sum_probs=66.2
Q ss_pred hhHHHHHhhcCCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccc-cccccceeecceeeccccccCCCcceeeEEE
Q 020346 148 LGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWF-EPILGSKWFEDQRVGEVSTKSGRGKHTTRHV 226 (327)
Q Consensus 148 ~~l~~l~~~l~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~-~p~~G~i~~~g~~v~~~s~~~~~g~~tt~~i 226 (327)
.+++++++. |++++|+||||+|||||+++|+| +. .|+.|.+. +. ....+
T Consensus 567 ~vl~disl~--g~i~~I~GpNGsGKSTlLr~iag------------l~~~~~~G~~v---------pa-------~~~~i 616 (765)
T 1ewq_A 567 FVPNDLEMA--HELVLITGPNMAGKSTFLRQTAL------------IALLAQVGSFV---------PA-------EEAHL 616 (765)
T ss_dssp CCCEEEEES--SCEEEEESCSSSSHHHHHHHHHH------------HHHHHTTTCCB---------SS-------SEEEE
T ss_pred eEeeeccCC--CcEEEEECCCCCChHHHHHHHHh------------hhhhcccCcee---------eh-------hccce
Confidence 345566666 99999999999999999999999 54 36777642 10 12234
Q ss_pred EEEEccCCCeEEeCcccCCccccccCHhHHhhhhHHHHHhcCcccccccccccccc-ccCCceEEcccH---H----HHH
Q 020346 227 SLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLH-LGEPGCVVKGDW---E----RYQ 298 (327)
Q Consensus 227 ~~v~q~~~~~i~Dtpg~~~~~l~~~~~~~l~~~~~~~~~~LSgGq~q~~~~~~~~h-~~ep~~~v~~~~---~----r~~ 298 (327)
+++++ +....+.. ++ +...+|+|+.++..++.+++ +.+|.++|+|+| . ...
T Consensus 617 ~~v~~-----i~~~~~~~----d~------------l~~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD~~~ 675 (765)
T 1ewq_A 617 PLFDG-----IYTRIGAS----DD------------LAGGKSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVA 675 (765)
T ss_dssp CCCSE-----EEEECCC----------------------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHH
T ss_pred eeHHH-----hhccCCHH----HH------------HHhcccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCcCHHH
Confidence 44433 11111111 11 11125666777777766542 679999999987 2 223
Q ss_pred HHHHHHHHHHH
Q 020346 299 YYFQLLDEIRI 309 (327)
Q Consensus 299 ~~~~ll~e~~~ 309 (327)
...++++.+.+
T Consensus 676 ~~~~i~~~L~~ 686 (765)
T 1ewq_A 676 IATAVAEALHE 686 (765)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 33456655544
|
| >3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* | Back alignment and structure |
|---|
Probab=98.26 E-value=2.6e-07 Score=88.80 Aligned_cols=44 Identities=20% Similarity=0.177 Sum_probs=33.7
Q ss_pred hcCccccccccccccccc-----cCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 266 MLKANEPAKCSFNNCLHL-----GEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 266 ~LSgGq~q~~~~~~~~h~-----~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
.|||||+||++++.++.. .+|+++++|+| ...+.+.++++++..
T Consensus 279 ~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~ 333 (365)
T 3qf7_A 279 GLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELER 333 (365)
T ss_dssp GSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGG
T ss_pred hCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh
Confidence 399999999999987732 79999999954 566666666666643
|
| >1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A* | Back alignment and structure |
|---|
Probab=98.25 E-value=1.4e-06 Score=74.23 Aligned_cols=61 Identities=28% Similarity=0.418 Sum_probs=37.5
Q ss_pred CCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcceeeEEEEEEEccCCCeEE
Q 020346 159 DQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLA 238 (327)
Q Consensus 159 g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~tt~~i~~v~q~~~~~i~ 238 (327)
--.++|+|++|||||||+|.|.+.. + ....+...+ +|....+...+....++
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~~----------~--------------~~~~~~~~~----~t~~~~~~~~~~~~~l~ 74 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLINRK----------N--------------LARTSSKPG----KTQTLNFYIINDELHFV 74 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC-----------------------------------------CCEEEEEETTTEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC----------C--------------ccccCCCCC----ceeeEEEEEECCcEEEE
Confidence 3579999999999999999999832 1 111111111 34444444445567899
Q ss_pred eCcccCCcc
Q 020346 239 DTPGFNQPS 247 (327)
Q Consensus 239 Dtpg~~~~~ 247 (327)
||||+....
T Consensus 75 Dt~G~~~~~ 83 (195)
T 1svi_A 75 DVPGYGFAK 83 (195)
T ss_dssp ECCCBCCCS
T ss_pred ECCCCCccc
Confidence 999986543
|
| >3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* | Back alignment and structure |
|---|
Probab=98.24 E-value=8.3e-07 Score=84.67 Aligned_cols=45 Identities=22% Similarity=0.299 Sum_probs=33.8
Q ss_pred hhhHHHHHhhcCCCEEEEEcCCCCCHHHHHHHHcCCCCCCCccccccccccccccee
Q 020346 147 KLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKW 203 (327)
Q Consensus 147 ~~~l~~l~~~l~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~ 203 (327)
..+++++++.++ .++|||++|||||||+|+|.|.. ++++.+|.+.
T Consensus 24 ~~~l~~i~~~lp--~I~vvG~~~sGKSSLln~l~g~~----------~lp~~~~~vT 68 (360)
T 3t34_A 24 SSALPTLWDSLP--AIAVVGGQSSGKSSVLESIVGKD----------FLPRGSGIVT 68 (360)
T ss_dssp SCCC----CCCC--EEEEECBTTSSHHHHHHHHHTSC----------CSCCCSSSCC
T ss_pred ccccccccccCC--EEEEECCCCCcHHHHHHHHhCCC----------cCCCCCCccc
Confidence 357888888887 89999999999999999999954 6667777654
|
| >3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* | Back alignment and structure |
|---|
Probab=98.23 E-value=3.2e-07 Score=79.99 Aligned_cols=53 Identities=25% Similarity=0.178 Sum_probs=41.6
Q ss_pred cchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccce--eecceeec
Q 020346 145 ESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK--WFEDQRVG 210 (327)
Q Consensus 145 ~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i--~~~g~~v~ 210 (327)
+.-...+...+.. +|++++|+|+||||||||.++|.+ .+. ..|.+ ++++.++.
T Consensus 10 ~~~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~------------~l~-~~G~~~~~~d~d~~~ 65 (200)
T 3uie_A 10 CSVEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQ------------MLY-QKGKLCYILDGDNVR 65 (200)
T ss_dssp CCCCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHH------------HHH-HTTCCEEEEEHHHHT
T ss_pred cccCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHH------------HHH-hcCceEEEecCchhh
Confidence 3344556666654 799999999999999999999999 555 67888 88876653
|
| >1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* | Back alignment and structure |
|---|
Probab=98.22 E-value=4.4e-07 Score=83.84 Aligned_cols=48 Identities=15% Similarity=0.229 Sum_probs=41.3
Q ss_pred hhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCccccccccccccc-ceeecce
Q 020346 148 LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILG-SKWFEDQ 207 (327)
Q Consensus 148 ~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G-~i~~~g~ 207 (327)
.+|+++++.+ +|+.++|+|+||+|||||++.|++ ...|++| .|.+.+.
T Consensus 23 ~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~------------~~~~~~G~~v~~~~~ 72 (296)
T 1cr0_A 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQAL------------QWGTAMGKKVGLAML 72 (296)
T ss_dssp TTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHH------------HHHHTSCCCEEEEES
T ss_pred HHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHH------------HHHHHcCCeEEEEeC
Confidence 4799999877 899999999999999999999999 7888878 6755443
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=98.21 E-value=3.7e-07 Score=88.02 Aligned_cols=48 Identities=17% Similarity=0.242 Sum_probs=40.4
Q ss_pred hHHHHHhhcCCCEEEEEcCCCCCHHHHHHHHcCCCCCCCccccccccccc-ccceeecceee
Q 020346 149 GLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPI-LGSKWFEDQRV 209 (327)
Q Consensus 149 ~l~~l~~~l~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~-~G~i~~~g~~v 209 (327)
.+++++ .-+|+.++|+||||||||||+++|++ +++|+ +|+|.+.+.++
T Consensus 127 ~l~~l~-~~~g~~i~ivG~~GsGKTTll~~l~~------------~~~~~~~g~I~~~e~~~ 175 (372)
T 2ewv_A 127 KVLELC-HRKMGLILVTGPTGSGKSTTIASMID------------YINQTKSYHIITIEDPI 175 (372)
T ss_dssp SHHHHT-TSSSEEEEEECSSSSSHHHHHHHHHH------------HHHHHSCCEEEEEESSC
T ss_pred HHHHHh-hcCCCEEEEECCCCCCHHHHHHHHHh------------hcCcCCCcEEEEecccH
Confidence 466654 23799999999999999999999999 99998 89997776654
|
| >2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B* | Back alignment and structure |
|---|
Probab=98.20 E-value=7.9e-08 Score=103.69 Aligned_cols=41 Identities=17% Similarity=0.248 Sum_probs=31.3
Q ss_pred eeccC-cchhhHHHHHhhc-C-------CCEEEEEcCCCCCHHHHHHHHcC
Q 020346 140 LFCSV-ESKLGLDSLLQRL-R-------DQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 140 ~~~s~-~~~~~l~~l~~~l-~-------g~~v~lvG~sG~GKSTLln~L~g 181 (327)
+.+.| ++..+++++++.+ + |++++|+||||+||||||+++ |
T Consensus 761 l~~~~~~~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-G 810 (1022)
T 2o8b_B 761 ITKTFFGDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-G 810 (1022)
T ss_dssp ------CCCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-H
T ss_pred EEEEecCCceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-H
Confidence 45555 4456788888877 3 799999999999999999999 8
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X | Back alignment and structure |
|---|
Probab=98.18 E-value=1.3e-06 Score=81.46 Aligned_cols=25 Identities=40% Similarity=0.464 Sum_probs=22.5
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcCC
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g~ 182 (327)
++..++|+|+||||||||+|.|+|.
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCC
Confidence 4558999999999999999999993
|
| >4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=98.17 E-value=1.9e-06 Score=75.34 Aligned_cols=24 Identities=33% Similarity=0.455 Sum_probs=21.8
Q ss_pred CCEEEEEcCCCCCHHHHHHHHcCC
Q 020346 159 DQTTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 159 g~~v~lvG~sG~GKSTLln~L~g~ 182 (327)
.-.++|+|.+|||||||+|.|.+.
T Consensus 29 ~~~i~v~G~~~~GKSslin~l~~~ 52 (223)
T 4dhe_A 29 QPEIAFAGRSNAGKSTAINVLCNQ 52 (223)
T ss_dssp SCEEEEEESCHHHHHHHHHHHTTC
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCC
Confidence 357999999999999999999994
|
| >2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A | Back alignment and structure |
|---|
Probab=98.17 E-value=4.4e-07 Score=81.67 Aligned_cols=39 Identities=23% Similarity=0.332 Sum_probs=35.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHc---CCCCCCCcccccccccccccceeeccee
Q 020346 158 RDQTTVIVGPSGVGKSSLINALR---SSPHASDAADVDNWFEPILGSKWFEDQR 208 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~---g~~~~~~~~~~~~~~~p~~G~i~~~g~~ 208 (327)
++++++|+|+||||||||+++|+ | +..|++|+|.+++.+
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg------------~~~~~~G~i~~~~~~ 67 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFG------------LQHLSSGHFLRENIK 67 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHC------------CCCEEHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhC------------CeEecHHHHHHHHHh
Confidence 57899999999999999999999 9 888999999887643
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=98.16 E-value=7.2e-07 Score=76.63 Aligned_cols=25 Identities=32% Similarity=0.542 Sum_probs=23.5
Q ss_pred cCCCEEEEEcCCCCCHHHHHHHHcC
Q 020346 157 LRDQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 157 l~g~~v~lvG~sG~GKSTLln~L~g 181 (327)
++|+.++|+||||||||||+|+|++
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~ 27 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLIT 27 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHh
Confidence 3689999999999999999999998
|
| >3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.16 E-value=6.6e-07 Score=81.78 Aligned_cols=47 Identities=17% Similarity=0.231 Sum_probs=33.0
Q ss_pred cCCcee-eccC-cchhhHHHHHhhc-C---CCEEEEEcCCCCCHHHHHHHHcC
Q 020346 135 WGYEPL-FCSV-ESKLGLDSLLQRL-R---DQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 135 ~~~~~~-~~s~-~~~~~l~~l~~~l-~---g~~v~lvG~sG~GKSTLln~L~g 181 (327)
+.++.+ +++| ....+++++++.+ + |++++|+|+|||||||+.++|++
T Consensus 18 l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 18 LETGSLLHSPFDEEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp --------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHH
T ss_pred eEEcceeeEEecCcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHH
Confidence 345566 7788 6678999999998 5 99999999999999999999986
|
| >4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis} | Back alignment and structure |
|---|
Probab=98.14 E-value=5.8e-07 Score=81.66 Aligned_cols=41 Identities=27% Similarity=0.444 Sum_probs=37.5
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHc---CCCCCCCccccccccccccccee--------ecceeec
Q 020346 158 RDQTTVIVGPSGVGKSSLINALR---SSPHASDAADVDNWFEPILGSKW--------FEDQRVG 210 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~---g~~~~~~~~~~~~~~~p~~G~i~--------~~g~~v~ 210 (327)
+|.+++|+||||||||||+++|+ | +..|++|.+. .+|.++.
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~Lg------------~~~~d~g~i~r~~~~~~~~~g~~~~ 77 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESLN------------WRLLDSGAIYRVLALAALHHQVDIS 77 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHTT------------CEEEEHHHHHHHHHHHHHHTTCCSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcC------------CCcCCCCceehHhHHHHHHcCCCcc
Confidence 68999999999999999999999 8 8899999999 8887763
|
| >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* | Back alignment and structure |
|---|
Probab=98.14 E-value=2.8e-07 Score=87.16 Aligned_cols=84 Identities=15% Similarity=0.165 Sum_probs=56.9
Q ss_pred CCceeeccCcchhhHHHHHhhc-CC-------CEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecce
Q 020346 136 GYEPLFCSVESKLGLDSLLQRL-RD-------QTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQ 207 (327)
Q Consensus 136 ~~~~~~~s~~~~~~l~~l~~~l-~g-------~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~ 207 (327)
..+.+...++...+++++++.+ .| ..++|+||||+|||||+++|++.... -..|++|.+..++.
T Consensus 20 r~~~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~--------~~~~~sg~~~~~~~ 91 (334)
T 1in4_A 20 RPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQT--------NIHVTSGPVLVKQG 91 (334)
T ss_dssp SCSSGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTC--------CEEEEETTTCCSHH
T ss_pred CCccHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCC--------CEEEEechHhcCHH
Confidence 3445555677778899998886 33 68999999999999999999992100 12788999887776
Q ss_pred eeccccccCCCcceeeEEEEEEEcc
Q 020346 208 RVGEVSTKSGRGKHTTRHVSLLPLS 232 (327)
Q Consensus 208 ~v~~~s~~~~~g~~tt~~i~~v~q~ 232 (327)
++....... ....+.++++.
T Consensus 92 ~l~~~~~~~-----~~~~v~~iDE~ 111 (334)
T 1in4_A 92 DMAAILTSL-----ERGDVLFIDEI 111 (334)
T ss_dssp HHHHHHHHC-----CTTCEEEEETG
T ss_pred HHHHHHHHc-----cCCCEEEEcch
Confidence 654332111 12346667664
|
| >3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=98.13 E-value=1.7e-06 Score=88.27 Aligned_cols=55 Identities=13% Similarity=0.187 Sum_probs=45.7
Q ss_pred cCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccc-cceeecceee
Q 020346 143 SVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPIL-GSKWFEDQRV 209 (327)
Q Consensus 143 s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~-G~i~~~g~~v 209 (327)
-++...+++.+++.+ .|+.++|+||||+|||||+++|++ ++.+.. |.+.+++.+.
T Consensus 43 i~G~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~------------~l~~~~~~~~~~~~~~~ 99 (604)
T 3k1j_A 43 VIGQEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAE------------LLPTETLEDILVFPNPE 99 (604)
T ss_dssp CCSCHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHH------------TSCCSSCEEEEEECCTT
T ss_pred EECchhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhc------------cCCcccCCeEEEeCCcc
Confidence 356778899999987 899999999999999999999999 666666 6777766544
|
| >3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A* | Back alignment and structure |
|---|
Probab=98.11 E-value=2.7e-06 Score=79.55 Aligned_cols=23 Identities=43% Similarity=0.614 Sum_probs=21.3
Q ss_pred CEEEEEcCCCCCHHHHHHHHcCC
Q 020346 160 QTTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 160 ~~v~lvG~sG~GKSTLln~L~g~ 182 (327)
-.++|+|.+|||||||+|.|.|.
T Consensus 11 g~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 11 GYVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 47999999999999999999994
|
| >2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=98.09 E-value=6.7e-07 Score=76.87 Aligned_cols=37 Identities=30% Similarity=0.529 Sum_probs=31.3
Q ss_pred CCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeec
Q 020346 159 DQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (327)
Q Consensus 159 g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~ 210 (327)
|++++|+||||||||||++.|++ |.+|.+++++.++.
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---------------~~~g~~~i~~d~~~ 38 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---------------QLDNSAYIEGDIIN 38 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---------------HSSSEEEEEHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---------------ccCCeEEEcccchh
Confidence 56899999999999999999986 45688888876654
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=98.08 E-value=1.7e-06 Score=74.59 Aligned_cols=22 Identities=41% Similarity=0.757 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHcCC
Q 020346 161 TTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g~ 182 (327)
.++|+|+||||||||+|.|.+.
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6899999999999999999984
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A | Back alignment and structure |
|---|
Probab=98.06 E-value=4.4e-06 Score=70.67 Aligned_cols=25 Identities=44% Similarity=0.597 Sum_probs=22.3
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcCC
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g~ 182 (327)
+|..++|+|+||||||||+|.|.+.
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4678999999999999999999983
|
| >3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=98.06 E-value=1.7e-06 Score=76.31 Aligned_cols=25 Identities=48% Similarity=0.672 Sum_probs=23.6
Q ss_pred cCCCEEEEEcCCCCCHHHHHHHHcC
Q 020346 157 LRDQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 157 l~g~~v~lvG~sG~GKSTLln~L~g 181 (327)
.+|+.++|+||||||||||+|.|++
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~~L~~ 41 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKNALLS 41 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCEEEEECcCCCCHHHHHHHHHh
Confidence 3799999999999999999999998
|
| >3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A* | Back alignment and structure |
|---|
Probab=98.05 E-value=1e-06 Score=94.19 Aligned_cols=33 Identities=21% Similarity=0.266 Sum_probs=28.0
Q ss_pred hhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHc
Q 020346 148 LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALR 180 (327)
Q Consensus 148 ~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~ 180 (327)
.+++++++.+ +|++++|+||||+||||||+++.
T Consensus 650 ~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ia 683 (934)
T 3thx_A 650 FIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTG 683 (934)
T ss_dssp CCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHH
T ss_pred eecccceeecCCCeEEEEECCCCCCHHHHHHHHH
Confidence 3555777776 68999999999999999999993
|
| >4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} | Back alignment and structure |
|---|
Probab=98.04 E-value=1.6e-06 Score=75.45 Aligned_cols=37 Identities=22% Similarity=0.380 Sum_probs=31.8
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeec
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~ 210 (327)
+|+.++|+|+||||||||+++|.+ .+ |.+++++.++.
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~------------~~----g~~~i~~d~~~ 64 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVAD------------ET----GLEFAEADAFH 64 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH------------HH----CCEEEEGGGGS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH------------hh----CCeEEcccccc
Confidence 689999999999999999999998 43 78888776653
|
| >3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B* | Back alignment and structure |
|---|
Probab=98.02 E-value=2.9e-07 Score=98.12 Aligned_cols=34 Identities=24% Similarity=0.240 Sum_probs=29.0
Q ss_pred hhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcC
Q 020346 148 LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 148 ~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g 181 (327)
.+++++++.+ +|++++|+||||+||||||+++.+
T Consensus 661 ~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~ 695 (918)
T 3thx_B 661 YVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVAL 695 (918)
T ss_dssp SCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHH
T ss_pred eecccccccCCCCeEEEEECCCCCchHHHHHHHHH
Confidence 4555677766 689999999999999999999976
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* | Back alignment and structure |
|---|
Probab=98.02 E-value=5e-06 Score=69.55 Aligned_cols=23 Identities=35% Similarity=0.601 Sum_probs=21.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHcCC
Q 020346 160 QTTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 160 ~~v~lvG~sG~GKSTLln~L~g~ 182 (327)
..++|+|+||||||||+|.|.+.
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 36899999999999999999983
|
| >1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1 | Back alignment and structure |
|---|
Probab=98.02 E-value=6.1e-06 Score=77.10 Aligned_cols=23 Identities=43% Similarity=0.573 Sum_probs=21.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHcCC
Q 020346 160 QTTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 160 ~~v~lvG~sG~GKSTLln~L~g~ 182 (327)
..++|+|.||||||||+|.|+|.
T Consensus 8 g~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 8 GFVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36999999999999999999994
|
| >1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=98.01 E-value=1.2e-06 Score=81.73 Aligned_cols=24 Identities=25% Similarity=0.249 Sum_probs=22.6
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcC
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g 181 (327)
++.+++|+|+||||||||.+.|.+
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 567999999999999999999998
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=98.01 E-value=1.7e-06 Score=75.80 Aligned_cols=49 Identities=16% Similarity=0.138 Sum_probs=39.5
Q ss_pred hhHHHHHh-hc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeeccee
Q 020346 148 LGLDSLLQ-RL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQR 208 (327)
Q Consensus 148 ~~l~~l~~-~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~ 208 (327)
..|+++.. -+ +|+.++|+|+||+|||||++.|++ ...+..|.+.+.+.+
T Consensus 10 ~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~------------~~~~~~~~v~~~~~~ 60 (235)
T 2w0m_A 10 LDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIA------------KGLRDGDPCIYVTTE 60 (235)
T ss_dssp HHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHH------------HHHHHTCCEEEEESS
T ss_pred hHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHH------------HHHHCCCeEEEEEcc
Confidence 45677665 34 899999999999999999999998 666777887776543
|
| >3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=97.98 E-value=1e-05 Score=73.83 Aligned_cols=23 Identities=39% Similarity=0.654 Sum_probs=21.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHcCC
Q 020346 160 QTTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 160 ~~v~lvG~sG~GKSTLln~L~g~ 182 (327)
..++|+|++|||||||+|.|.|.
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999993
|
| >2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=97.98 E-value=2.8e-06 Score=73.50 Aligned_cols=24 Identities=33% Similarity=0.584 Sum_probs=23.2
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcC
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g 181 (327)
+|+.++|+|+||||||||+++|.+
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~ 28 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFE 28 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999999998
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=97.98 E-value=1.3e-05 Score=67.82 Aligned_cols=22 Identities=36% Similarity=0.625 Sum_probs=20.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHcC
Q 020346 160 QTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 160 ~~v~lvG~sG~GKSTLln~L~g 181 (327)
..++|+|++|||||||+|.|.+
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~ 29 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTG 29 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4789999999999999999998
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.98 E-value=5.8e-06 Score=73.78 Aligned_cols=23 Identities=35% Similarity=0.499 Sum_probs=21.4
Q ss_pred CEEEEEcCCCCCHHHHHHHHcCC
Q 020346 160 QTTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 160 ~~v~lvG~sG~GKSTLln~L~g~ 182 (327)
-.++|+|++|||||||+|.|+|.
T Consensus 30 ~~i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 30 LRIVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHcCC
Confidence 47999999999999999999994
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=97.96 E-value=3.4e-06 Score=72.76 Aligned_cols=22 Identities=41% Similarity=0.757 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHcCC
Q 020346 161 TTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g~ 182 (327)
.++|+|+||||||||+|.|.|.
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6899999999999999999984
|
| >3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila} | Back alignment and structure |
|---|
Probab=97.96 E-value=1.2e-05 Score=73.23 Aligned_cols=22 Identities=32% Similarity=0.671 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHcCC
Q 020346 161 TTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g~ 182 (327)
.++|+|.+|||||||+|.|.|.
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 6899999999999999999993
|
| >1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2 | Back alignment and structure |
|---|
Probab=97.95 E-value=1.4e-05 Score=75.37 Aligned_cols=98 Identities=12% Similarity=0.091 Sum_probs=70.2
Q ss_pred cccccEEEEEeecCCCCCChHHHHHHHHHHHhcCCCEEEEeecCCCCcHHHHHHHHhhhhhcCCceeeccCcchhhHHHH
Q 020346 74 VANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSL 153 (327)
Q Consensus 74 ~anvD~lliv~~~~~p~~~~~~l~r~L~~a~~~~~~~~ivlnK~Dl~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~l 153 (327)
.+|.|..++ .++. +.++...+++++ ....|.+|++|.|..+++-. +..++.+++++..+......+..+
T Consensus 53 ~Gn~E~~yL-~~L~-~e~~~~rler~l-----~~~~P~IIltrg~~~peeli----e~A~~~~IPVL~T~~~ts~~~~~l 121 (314)
T 1ko7_A 53 LGTTELSFY-NLLP-DEERKGRMRKLC-----RPETPAIIVTRDLEPPEELI----EAAKEHETPLITSKIATTQLMSRL 121 (314)
T ss_dssp ECHHHHHHH-HHSC-HHHHTTHHHHHC-----CTTCCCEEECTTCCCCHHHH----HHHHHTTCCEEECCSCHHHHHHHH
T ss_pred EechhHHHH-HhcC-HHHHHHHHHHHh-----cCCCCEEEEeCCCCCCHHHH----HHHHHCCCeEEEECCchhHHHHHH
Confidence 466676655 3333 344556777776 35678899999999876533 223334788888888777766666
Q ss_pred Hhhc-----------------CCCEEEEEcCCCCCHHHHHHHHcCC
Q 020346 154 LQRL-----------------RDQTTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 154 ~~~l-----------------~g~~v~lvG~sG~GKSTLln~L~g~ 182 (327)
...+ .|..++|+|+||+|||||...|...
T Consensus 122 ~~~l~~~~~~~~~~H~~~v~~~g~~vl~~G~sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 122 TTFLEHELARTTSLHGVLVDVYGVGVLITGDSGIGKSETALELIKR 167 (314)
T ss_dssp HHHHHHHTCEEEEEESEEEEETTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred HHHHHHhhccceeeeEEEEEECCEEEEEEeCCCCCHHHHHHHHHhc
Confidence 5544 3889999999999999999999874
|
| >3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=97.95 E-value=2e-06 Score=81.34 Aligned_cols=43 Identities=23% Similarity=0.253 Sum_probs=35.2
Q ss_pred eeeccCcchhhHHHHHhhc-CCC------EEEEEcCCCCCHHHHHHHHcC
Q 020346 139 PLFCSVESKLGLDSLLQRL-RDQ------TTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 139 ~~~~s~~~~~~l~~l~~~l-~g~------~v~lvG~sG~GKSTLln~L~g 181 (327)
.+.+.|++...+.+++..+ .+. +++|+|+||||||||+++|.+
T Consensus 65 ll~~~~~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 65 LLSFYVTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHhhcchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3455567778888888876 333 899999999999999999998
|
| >3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A* | Back alignment and structure |
|---|
Probab=97.94 E-value=1.6e-05 Score=72.81 Aligned_cols=23 Identities=52% Similarity=0.752 Sum_probs=21.0
Q ss_pred EEEEEcCCCCCHHHHHHHHcCCC
Q 020346 161 TTVIVGPSGVGKSSLINALRSSP 183 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g~~ 183 (327)
.++|+|.+|+|||||+|.|.+..
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~~ 32 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLTD 32 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999843
|
| >4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.94 E-value=5.8e-06 Score=79.88 Aligned_cols=22 Identities=36% Similarity=0.548 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCHHHHHHHHcCC
Q 020346 161 TTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g~ 182 (327)
.++|||.||||||||+|+|.+.
T Consensus 74 ~V~ivG~PNvGKSTL~n~Lt~~ 95 (376)
T 4a9a_A 74 SVGFVGFPSVGKSTLLSKLTGT 95 (376)
T ss_dssp EEEEECCCCHHHHHHHHHHHSB
T ss_pred eEEEECCCCCCHHHHHHHHhCC
Confidence 7999999999999999999993
|
| >1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=97.93 E-value=6.2e-06 Score=80.10 Aligned_cols=52 Identities=27% Similarity=0.258 Sum_probs=37.6
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceee
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRV 209 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v 209 (327)
.|.+++|+|+||||||||+|+|+|.....+..--.+...|+.|.+.+.|..+
T Consensus 19 ~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~ 70 (392)
T 1ni3_A 19 NNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERF 70 (392)
T ss_dssp SCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcch
Confidence 6889999999999999999999994320111111225678999998877544
|
| >2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A* | Back alignment and structure |
|---|
Probab=97.93 E-value=3.6e-06 Score=75.13 Aligned_cols=38 Identities=21% Similarity=0.342 Sum_probs=33.3
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecc
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~ 211 (327)
+|+.++|+|+||||||||+++|.+ + .|+|.+.+.+...
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~------------~----~g~v~~~~~~~~~ 56 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEK------------Y----KNDICLLTEPVEK 56 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGG------------G----TTTEEEECCTHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHh------------c----cCCeEEEecCHHH
Confidence 689999999999999999999998 5 6888888877643
|
| >2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.92 E-value=2.1e-06 Score=82.24 Aligned_cols=43 Identities=37% Similarity=0.437 Sum_probs=29.1
Q ss_pred cCCceeeccCcchhhHHHHHhhcCCCEEEEEcCCCCCHHHHHHHHcCC
Q 020346 135 WGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 135 ~~~~~~~~s~~~~~~l~~l~~~l~g~~v~lvG~sG~GKSTLln~L~g~ 182 (327)
+++..++..+..+.+.+++.+ .++|+|+||+|||||+|.|.+.
T Consensus 18 v~~~~l~~~~~~k~~~~~~~~-----~I~vvG~~g~GKSTLln~L~~~ 60 (361)
T 2qag_A 18 VGFANLPNQVHRKSVKKGFEF-----TLMVVGESGLGKSTLINSLFLT 60 (361)
T ss_dssp ---CCHHHHHHTHHHHHCCEE-----CEEECCCTTSCHHHHHHHHTTC
T ss_pred EEeccchHHhCCeeecCCCCE-----EEEEEcCCCCCHHHHHHHHhCC
Confidence 455555555555544444433 4699999999999999999883
|
| >1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=97.90 E-value=3.5e-06 Score=73.60 Aligned_cols=40 Identities=23% Similarity=0.012 Sum_probs=33.8
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceee
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRV 209 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v 209 (327)
+|.+++|+|+||||||||++.|.+ +++|..|.+.+.+.+.
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~------------~~~~~~~~v~~~~~d~ 60 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQ------------TLREQGISVCVFHMDD 60 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHH------------HHHHTTCCEEEEEGGG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH------------HHhhcCCeEEEeccCc
Confidence 578999999999999999999998 7777778877655443
|
| >3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X* | Back alignment and structure |
|---|
Probab=97.87 E-value=6.1e-06 Score=70.24 Aligned_cols=30 Identities=30% Similarity=0.412 Sum_probs=24.5
Q ss_pred HHHhhcCCCEEEEEcCCCCCHHHHHHHHcC
Q 020346 152 SLLQRLRDQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 152 ~l~~~l~g~~v~lvG~sG~GKSTLln~L~g 181 (327)
++++.+....++|+|+||||||||+++|.+
T Consensus 19 ~~~~~~~~g~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 19 KVVIPFSKGFTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp CEEEECCSSEEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEecCCCcEEEECCCCCCHHHHHHHHHH
Confidence 444555334999999999999999999988
|
| >3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A* | Back alignment and structure |
|---|
Probab=97.87 E-value=2.1e-05 Score=72.14 Aligned_cols=23 Identities=35% Similarity=0.525 Sum_probs=21.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHcCC
Q 020346 160 QTTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 160 ~~v~lvG~sG~GKSTLln~L~g~ 182 (327)
-.++|+|.+|||||||+|.|.|.
T Consensus 4 ~~I~lvG~~n~GKSTLin~l~g~ 26 (274)
T 3i8s_A 4 LTIGLIGNPNSGKTTLFNQLTGS 26 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 36899999999999999999993
|
| >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.86 E-value=4.2e-06 Score=79.81 Aligned_cols=40 Identities=18% Similarity=0.141 Sum_probs=33.6
Q ss_pred CCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeec
Q 020346 159 DQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (327)
Q Consensus 159 g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~ 210 (327)
+.+++|+|+||||||||+|.|.+ ...|+.|+|.+.+.+..
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~------------~~~~~~~~v~V~~~dp~ 113 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGK------------MLTERGHKLSVLAVDPS 113 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH------------HHHHTTCCEEEEECCC-
T ss_pred ceEEEEEcCCCCCHHHHHHHHHH------------HhhhcCCeEEEEeecCC
Confidence 67899999999999999999999 77778888777665543
|
| >3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A | Back alignment and structure |
|---|
Probab=97.82 E-value=3e-05 Score=70.64 Aligned_cols=22 Identities=41% Similarity=0.625 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHcCC
Q 020346 161 TTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g~ 182 (327)
.++|+|.+|||||||+|.|.|.
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~ 28 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGT 28 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 6899999999999999999993
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* | Back alignment and structure |
|---|
Probab=97.82 E-value=1.6e-05 Score=68.24 Aligned_cols=34 Identities=24% Similarity=0.345 Sum_probs=21.5
Q ss_pred hHHHHHhhcCCCEEEEEcCCCCCHHHHHHHHcCC
Q 020346 149 GLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 149 ~l~~l~~~l~g~~v~lvG~sG~GKSTLln~L~g~ 182 (327)
+++++++..+.-.++|+|++|||||||+|.|.+.
T Consensus 13 ~l~~~~~~~~~~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 13 VLASLGLWNKHGKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp -----------CEEEEEESTTSSHHHHHHHHHHS
T ss_pred HHHHhhccCCccEEEEECCCCCCHHHHHHHHhcC
Confidence 5677777766678999999999999999999973
|
| >1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A* | Back alignment and structure |
|---|
Probab=97.82 E-value=1.2e-05 Score=73.40 Aligned_cols=23 Identities=39% Similarity=0.654 Sum_probs=21.2
Q ss_pred CEEEEEcCCCCCHHHHHHHHcCC
Q 020346 160 QTTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 160 ~~v~lvG~sG~GKSTLln~L~g~ 182 (327)
-+++++|.+|+|||||+|.|.+.
T Consensus 40 ~~I~vvG~~g~GKSSLin~l~~~ 62 (270)
T 1h65_A 40 LTILVMGKGGVGKSSTVNSIIGE 62 (270)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 47999999999999999999984
|
| >3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.82 E-value=8.5e-06 Score=70.79 Aligned_cols=36 Identities=25% Similarity=0.332 Sum_probs=23.0
Q ss_pred chhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcC
Q 020346 146 SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 146 ~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g 181 (327)
...+++++++.+ +++.++|+|+|||||||+.+.|+.
T Consensus 11 ~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 11 VDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp -------------CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHH
Confidence 345789999997 889999999999999999999986
|
| >1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* | Back alignment and structure |
|---|
Probab=97.82 E-value=2.3e-05 Score=64.64 Aligned_cols=22 Identities=32% Similarity=0.578 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHcCC
Q 020346 161 TTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g~ 182 (327)
.++|+|++|||||||+|.|.+.
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6899999999999999999984
|
| >2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=97.81 E-value=5.6e-06 Score=78.60 Aligned_cols=54 Identities=17% Similarity=0.083 Sum_probs=41.1
Q ss_pred ccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecce
Q 020346 142 CSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQ 207 (327)
Q Consensus 142 ~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~ 207 (327)
.+|....+++++++.. ++.+++|+|+||+|||||+|.|++ .+.+..|++.+-+.
T Consensus 38 ~~~~~~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~------------~~~~~~~~v~v~~~ 92 (341)
T 2p67_A 38 HQALSTQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGM------------LLIREGLKVAVIAV 92 (341)
T ss_dssp HHHHHHHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHH------------HHHHTTCCEEEEEE
T ss_pred hhhHHHHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHH------------HHHhcCCeEEEEee
Confidence 3444556788888876 788999999999999999999987 55555555554433
|
| >3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=97.81 E-value=8.5e-06 Score=71.53 Aligned_cols=24 Identities=42% Similarity=0.639 Sum_probs=23.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcC
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g 181 (327)
+|+.++|+||||||||||++.|++
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~ 30 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFK 30 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECcCCCCHHHHHHHHHh
Confidence 689999999999999999999998
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=97.81 E-value=5.7e-06 Score=69.33 Aligned_cols=24 Identities=33% Similarity=0.461 Sum_probs=23.5
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcC
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g 181 (327)
+|+.++|+|+||+|||||+++|.+
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~ 58 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVA 58 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 899999999999999999999999
|
| >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* | Back alignment and structure |
|---|
Probab=97.80 E-value=7.1e-06 Score=69.37 Aligned_cols=24 Identities=29% Similarity=0.490 Sum_probs=22.7
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcC
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g 181 (327)
+|+.++|+|+||||||||++.|.+
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 578999999999999999999987
|
| >2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.80 E-value=2.3e-05 Score=65.13 Aligned_cols=22 Identities=36% Similarity=0.643 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHcCC
Q 020346 161 TTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g~ 182 (327)
.++|+|++|||||||+|.|.+.
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCccHHHHHHHHhcC
Confidence 5899999999999999999984
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* | Back alignment and structure |
|---|
Probab=97.80 E-value=1.3e-05 Score=69.41 Aligned_cols=35 Identities=23% Similarity=0.293 Sum_probs=30.6
Q ss_pred hhHHHHHhhcCCCEEEEEcCCCCCHHHHHHHHcCC
Q 020346 148 LGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 148 ~~l~~l~~~l~g~~v~lvG~sG~GKSTLln~L~g~ 182 (327)
.+++++++..+.-.++|+|++|||||||+|.|.+.
T Consensus 14 ~~l~~~~~~~~~~ki~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 14 SVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp HHHHHHTCTTCCEEEEEEEETTSSHHHHHHHHSCC
T ss_pred HHHHHhhccCCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 57788888776678999999999999999999983
|
| >3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A* | Back alignment and structure |
|---|
Probab=97.80 E-value=1.4e-05 Score=72.69 Aligned_cols=23 Identities=43% Similarity=0.692 Sum_probs=21.3
Q ss_pred CEEEEEcCCCCCHHHHHHHHcCC
Q 020346 160 QTTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 160 ~~v~lvG~sG~GKSTLln~L~g~ 182 (327)
-.++|+|.+|||||||+|.|++.
T Consensus 37 ~~I~lvG~~g~GKSSLin~l~~~ 59 (262)
T 3def_A 37 MTVLVLGKGGVGKSSTVNSLIGE 59 (262)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTS
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 47999999999999999999994
|
| >1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A* | Back alignment and structure |
|---|
Probab=97.78 E-value=1.4e-05 Score=81.55 Aligned_cols=24 Identities=38% Similarity=0.394 Sum_probs=21.8
Q ss_pred CCEEEEEcCCCCCHHHHHHHHcCC
Q 020346 159 DQTTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 159 g~~v~lvG~sG~GKSTLln~L~g~ 182 (327)
..+++|+|++|+|||||+|.|.|.
T Consensus 38 ~~~VaivG~pnvGKStLiN~L~g~ 61 (592)
T 1f5n_A 38 MVVVAIVGLYRTGKSYLMNKLAGK 61 (592)
T ss_dssp EEEEEEEEBTTSSHHHHHHHHTTC
T ss_pred CcEEEEECCCCCCHHHHHHhHcCC
Confidence 357899999999999999999994
|
| >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=97.78 E-value=1.2e-05 Score=71.15 Aligned_cols=41 Identities=12% Similarity=0.140 Sum_probs=32.6
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccc-----cccceeeccee
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEP-----ILGSKWFEDQR 208 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p-----~~G~i~~~g~~ 208 (327)
+|++++|+||||+|||||++.|++.. ..+| ..|.+++++..
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~~----------~~~~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVTC----------QLPIDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHT----------TSCGGGTCCSSEEEEEESSS
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH----------hCchhcCCCCCeEEEEECCC
Confidence 78999999999999999999999832 2334 46777777654
|
| >2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.78 E-value=1.1e-05 Score=78.49 Aligned_cols=51 Identities=25% Similarity=0.249 Sum_probs=31.4
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceee
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRV 209 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v 209 (327)
.+..++|||+||||||||+|+|.+........ -.+...|..|.+.+.+..+
T Consensus 21 ~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~-p~tTi~p~~g~v~v~~~r~ 71 (396)
T 2ohf_A 21 TSLKIGIVGLPNVGKSTFFNVLTNSQASAENF-PFCTIDPNESRVPVPDERF 71 (396)
T ss_dssp SCCCEEEECCSSSSHHHHHHHHHC--------------CCSEEEEECCCHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCccccCC-CccccCceeEEEEECCccc
Confidence 57789999999999999999999942100000 0012456777776655443
|
| >2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A | Back alignment and structure |
|---|
Probab=97.77 E-value=2.6e-05 Score=70.27 Aligned_cols=24 Identities=29% Similarity=0.508 Sum_probs=21.8
Q ss_pred CCEEEEEcCCCCCHHHHHHHHcCC
Q 020346 159 DQTTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 159 g~~v~lvG~sG~GKSTLln~L~g~ 182 (327)
.-.++|+|++|||||||+|.|++.
T Consensus 22 ~~~I~lvG~~g~GKStl~n~l~~~ 45 (260)
T 2xtp_A 22 ELRIILVGKTGTGKSAAGNSILRK 45 (260)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHTS
T ss_pred ceEEEEECCCCCCHHHHHHHHhCC
Confidence 357999999999999999999984
|
| >1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=97.77 E-value=2.9e-05 Score=63.91 Aligned_cols=22 Identities=36% Similarity=0.569 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHcCC
Q 020346 161 TTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g~ 182 (327)
.++|+|++|||||||+|.|.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999973
|
| >3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A* | Back alignment and structure |
|---|
Probab=97.77 E-value=2.3e-05 Score=72.18 Aligned_cols=23 Identities=26% Similarity=0.504 Sum_probs=21.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHcCC
Q 020346 160 QTTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 160 ~~v~lvG~sG~GKSTLln~L~g~ 182 (327)
..++|+|+||||||||+|.|.|.
T Consensus 4 ~kI~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 4 TEIALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHHCC
Confidence 36899999999999999999993
|
| >4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A* | Back alignment and structure |
|---|
Probab=97.76 E-value=1.9e-05 Score=77.72 Aligned_cols=23 Identities=35% Similarity=0.592 Sum_probs=21.5
Q ss_pred CCEEEEEcCCCCCHHHHHHHHcC
Q 020346 159 DQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 159 g~~v~lvG~sG~GKSTLln~L~g 181 (327)
--+++|+|.||||||||+|.|.|
T Consensus 23 ~~~V~lvG~~nvGKSTL~n~l~~ 45 (456)
T 4dcu_A 23 KPVVAIVGRPNVGKSTIFNRIAG 45 (456)
T ss_dssp CCEEEEECSSSSSHHHHHHHHEE
T ss_pred CCEEEEECCCCCcHHHHHHHHhC
Confidence 35899999999999999999998
|
| >3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* | Back alignment and structure |
|---|
Probab=97.76 E-value=2.7e-05 Score=64.24 Aligned_cols=22 Identities=32% Similarity=0.607 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHcCC
Q 020346 161 TTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g~ 182 (327)
.++|+|++|||||||+|.|.+.
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~ 25 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGV 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHcCc
Confidence 6899999999999999999983
|
| >1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* | Back alignment and structure |
|---|
Probab=97.75 E-value=3.3e-05 Score=64.35 Aligned_cols=22 Identities=41% Similarity=0.733 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHcCC
Q 020346 161 TTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g~ 182 (327)
.++|+|++|||||||+|.|.+.
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999999873
|
| >3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.75 E-value=4e-05 Score=63.82 Aligned_cols=22 Identities=45% Similarity=0.697 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHcCC
Q 020346 161 TTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g~ 182 (327)
.++|+|++|||||||+|.|.+.
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999984
|
| >1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* | Back alignment and structure |
|---|
Probab=97.74 E-value=4e-05 Score=62.70 Aligned_cols=22 Identities=36% Similarity=0.602 Sum_probs=20.3
Q ss_pred CEEEEEcCCCCCHHHHHHHHcC
Q 020346 160 QTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 160 ~~v~lvG~sG~GKSTLln~L~g 181 (327)
-.++|+|++|||||||+|.|.+
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~ 25 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVT 25 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHc
Confidence 3689999999999999999987
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=97.73 E-value=7.2e-06 Score=69.84 Aligned_cols=24 Identities=33% Similarity=0.452 Sum_probs=23.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcC
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g 181 (327)
+|+.++|+||||+|||||+++|++
T Consensus 37 ~g~~~~l~G~~G~GKTtL~~~i~~ 60 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHLAVATLK 60 (180)
T ss_dssp GCCEEEECCSSSSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999999999
|
| >1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=97.72 E-value=1.5e-05 Score=76.06 Aligned_cols=50 Identities=30% Similarity=0.499 Sum_probs=39.1
Q ss_pred hhHHHHH-hhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccc--cccc----cc-eeecceee
Q 020346 148 LGLDSLL-QRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWF--EPIL----GS-KWFEDQRV 209 (327)
Q Consensus 148 ~~l~~l~-~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~--~p~~----G~-i~~~g~~v 209 (327)
..|+.+. .-+ +|++++|+|+||+|||||++.|++ .. +|++ |. |++++.+.
T Consensus 118 ~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~------------~~~~~~~~Gg~~G~vi~i~~e~~ 176 (349)
T 1pzn_A 118 KSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAV------------MVQLPPEEGGLNGSVIWIDTENT 176 (349)
T ss_dssp HHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHH------------HTTSCGGGTSCSCEEEEEESSSC
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHH------------HhccchhcCCCCCeEEEEeCCCC
Confidence 3566553 334 899999999999999999999999 55 6777 57 88877654
|
| >1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* | Back alignment and structure |
|---|
Probab=97.70 E-value=4.4e-05 Score=62.79 Aligned_cols=21 Identities=43% Similarity=0.585 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHcC
Q 020346 161 TTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g 181 (327)
.++|+|++|||||||+|.|.+
T Consensus 8 ~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 689999999999999999997
|
| >1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=97.70 E-value=5.2e-05 Score=72.87 Aligned_cols=78 Identities=26% Similarity=0.245 Sum_probs=43.0
Q ss_pred CCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcceeeEEEEEEEccCCCeEE
Q 020346 159 DQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLA 238 (327)
Q Consensus 159 g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~tt~~i~~v~q~~~~~i~ 238 (327)
+..++|||.||||||||+|+|.+........ -.+...|+.|.+.+.+..+..++.... .. .+++ ....++
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~-p~tTi~p~~g~v~~~~~r~~~l~~~~~----~~---~~~~--~~i~lv 71 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANY-PFCTIEPNTGVVPMPDPRLDALAEIVK----PE---RILP--TTMEFV 71 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC-------CCCCCCCCSSEEECCCHHHHHHHHHHC----CS---EEEC--CEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCC-CCceECceEEEEecCCcccceeeeeec----cc---ceee--eEEEEE
Confidence 4579999999999999999999843100000 011345667766665543222211100 00 0111 134678
Q ss_pred eCcccCCc
Q 020346 239 DTPGFNQP 246 (327)
Q Consensus 239 Dtpg~~~~ 246 (327)
||||+...
T Consensus 72 DtpGl~~~ 79 (363)
T 1jal_A 72 DIAGLVAG 79 (363)
T ss_dssp ECCSCCTT
T ss_pred ECCCCccc
Confidence 99998753
|
| >2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=97.69 E-value=2.5e-05 Score=76.41 Aligned_cols=21 Identities=38% Similarity=0.643 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHcC
Q 020346 161 TTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g 181 (327)
.++|||++|||||||+|.|.|
T Consensus 5 ~V~ivG~~nvGKStL~n~l~~ 25 (436)
T 2hjg_A 5 VVAIVGRPNVGKSTIFNRIAG 25 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHEE
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 689999999999999999998
|
| >1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* | Back alignment and structure |
|---|
Probab=97.69 E-value=3.8e-05 Score=63.17 Aligned_cols=22 Identities=41% Similarity=0.588 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHcCC
Q 020346 161 TTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g~ 182 (327)
.++|+|++|||||||+|.|.+.
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999973
|
| >2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=97.69 E-value=4.4e-05 Score=65.21 Aligned_cols=23 Identities=30% Similarity=0.564 Sum_probs=21.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHcCC
Q 020346 160 QTTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 160 ~~v~lvG~sG~GKSTLln~L~g~ 182 (327)
-.++|+|++|||||||+|.|.+.
T Consensus 24 ~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 24 LKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 47999999999999999999973
|
| >2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=97.69 E-value=2.5e-05 Score=65.85 Aligned_cols=22 Identities=45% Similarity=0.631 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHcCC
Q 020346 161 TTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g~ 182 (327)
.++|+|++|||||||+|.|.+.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 5899999999999999999983
|
| >2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=97.68 E-value=6.9e-05 Score=61.69 Aligned_cols=22 Identities=36% Similarity=0.585 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHcCC
Q 020346 161 TTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g~ 182 (327)
.++|+|++|||||||+|.|.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999999983
|
| >3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A* | Back alignment and structure |
|---|
Probab=97.68 E-value=1.6e-05 Score=66.74 Aligned_cols=104 Identities=20% Similarity=0.216 Sum_probs=60.5
Q ss_pred cccccccccEEEEEeecCCCCCChHHHHHHHHHH----HhcCCCEEEEeecCCCCcHHH--HHHHHhhhhhcCCceeecc
Q 020346 70 LDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEA----ESTGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLFCS 143 (327)
Q Consensus 70 ~r~~~anvD~lliv~~~~~p~~~~~~l~r~L~~a----~~~~~~~~ivlnK~Dl~~~~~--~~~~~~~~~~~~~~~~~~s 143 (327)
.+....++|.+++|+++..+. +...+..++... ...+.|+++|.||+|+.++.. ..........++++.+.+|
T Consensus 71 ~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 149 (181)
T 3t5g_A 71 PQTYSIDINGYILVYSVTSIK-SFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESS 149 (181)
T ss_dssp CGGGTTTCSEEEEEEETTCHH-HHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECC
T ss_pred HHHHHhcCCEEEEEEECCCHH-HHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHHHhCCcEEEEe
Confidence 334567899999999987642 233343333222 234789999999999964321 1222233445677889999
Q ss_pred CcchhhHHHHHhhcCCCEEEEEcCCCCCHHH
Q 020346 144 VESKLGLDSLLQRLRDQTTVIVGPSGVGKSS 174 (327)
Q Consensus 144 ~~~~~~l~~l~~~l~g~~v~lvG~sG~GKST 174 (327)
+.+..+++++-..+.......-|+.++||||
T Consensus 150 a~~~~~v~~l~~~l~~~~~~~~~~~~~gkss 180 (181)
T 3t5g_A 150 AKENQTAVDVFRRIILEAEKMDGACSQGKSS 180 (181)
T ss_dssp TTSHHHHHHHHHHHHHHHHTC-----CCBSC
T ss_pred cCCCCCHHHHHHHHHHHHHHhcCCcccCcCC
Confidence 9988888777665422112223788899986
|
| >1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B* | Back alignment and structure |
|---|
Probab=97.67 E-value=4e-05 Score=70.83 Aligned_cols=24 Identities=29% Similarity=0.493 Sum_probs=21.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHcCCC
Q 020346 160 QTTVIVGPSGVGKSSLINALRSSP 183 (327)
Q Consensus 160 ~~v~lvG~sG~GKSTLln~L~g~~ 183 (327)
-.++|+|.+|||||||+|.|+|..
T Consensus 25 ~~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 25 PQIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp CEEEEEECSSSSHHHHHHHHHTSC
T ss_pred CeEEEEcCCCCCHHHHHHHHHCCC
Confidence 479999999999999999999954
|
| >1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* | Back alignment and structure |
|---|
Probab=97.66 E-value=5.5e-05 Score=61.94 Aligned_cols=23 Identities=35% Similarity=0.579 Sum_probs=20.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHcCC
Q 020346 160 QTTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 160 ~~v~lvG~sG~GKSTLln~L~g~ 182 (327)
-.++|+|++|||||||+|.|.+.
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 36899999999999999999973
|
| >4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* | Back alignment and structure |
|---|
Probab=97.66 E-value=5.2e-05 Score=63.70 Aligned_cols=22 Identities=45% Similarity=0.641 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHcCC
Q 020346 161 TTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g~ 182 (327)
.++|+|++|||||||+|.|.+.
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999973
|
| >2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.66 E-value=2.6e-05 Score=63.79 Aligned_cols=22 Identities=55% Similarity=0.685 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHcCC
Q 020346 161 TTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g~ 182 (327)
.++++|++|||||||+|.|.+.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999983
|
| >1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* | Back alignment and structure |
|---|
Probab=97.66 E-value=7.5e-05 Score=61.28 Aligned_cols=22 Identities=36% Similarity=0.594 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHcCC
Q 020346 161 TTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g~ 182 (327)
.++|+|++|||||||+|.|.+.
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999999873
|
| >1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* | Back alignment and structure |
|---|
Probab=97.66 E-value=6e-05 Score=62.18 Aligned_cols=22 Identities=32% Similarity=0.484 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHcCC
Q 020346 161 TTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g~ 182 (327)
.++|+|++|||||||+|.|.+.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6899999999999999999973
|
| >1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* | Back alignment and structure |
|---|
Probab=97.65 E-value=7.8e-06 Score=71.88 Aligned_cols=37 Identities=30% Similarity=0.478 Sum_probs=30.0
Q ss_pred CCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceee
Q 020346 159 DQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWF 204 (327)
Q Consensus 159 g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~ 204 (327)
+.+++|+|+|||||||+.++|.+... +..++.|.+..
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g---------~~~~d~g~i~~ 41 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQ---------WHLLDSGAIYR 41 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHT---------CEEEEHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC---------CCcccCcceee
Confidence 46899999999999999999987210 33788898877
|
| >1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=97.65 E-value=1.8e-05 Score=67.06 Aligned_cols=103 Identities=17% Similarity=0.142 Sum_probs=56.9
Q ss_pred ccccccccEEEEEeecCCCCCChHHHHHHHHHHHh----cCCCEEEEeecCCCCcHHH-HHHHHhhhhhcCCceeeccCc
Q 020346 71 DPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES----TGIPLTLALNKVELVDEEV-LNTWKSRLHTWGYEPLFCSVE 145 (327)
Q Consensus 71 r~~~anvD~lliv~~~~~p~~~~~~l~r~L~~a~~----~~~~~~ivlnK~Dl~~~~~-~~~~~~~~~~~~~~~~~~s~~ 145 (327)
+..+.++|.+++|+++..|. +...+..++..... ...|+++|+||+|+.+... ...........++..+.+|+.
T Consensus 82 ~~~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 160 (195)
T 1x3s_A 82 PSYYRGAQGVILVYDVTRRD-TFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFARKHSMLFIEASAK 160 (195)
T ss_dssp HHHHTTCCEEEEEEETTCHH-HHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHHHHHHTTCEEEECCTT
T ss_pred HHHhccCCEEEEEEECcCHH-HHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcccccCHHHHHHHHHHcCCEEEEecCC
Confidence 34568999999999987642 33345555544443 3678899999999954321 112223344567788889998
Q ss_pred chhhHHHHHhhc-----CCCEEEEEcCCCCCHHH
Q 020346 146 SKLGLDSLLQRL-----RDQTTVIVGPSGVGKSS 174 (327)
Q Consensus 146 ~~~~l~~l~~~l-----~g~~v~lvG~sG~GKST 174 (327)
+..+++.+-..+ .....---+.+++||||
T Consensus 161 ~~~gi~~l~~~l~~~~~~~~~~~~~~~~n~gkSs 194 (195)
T 1x3s_A 161 TCDGVQCAFEELVEKIIQTPGLWESENQNSGPSS 194 (195)
T ss_dssp TCTTHHHHHHHHHHHHHTSGGGTCC---------
T ss_pred CCCCHHHHHHHHHHHHHhhhhhhcccccCCCCCC
Confidence 877776654432 21111112455999997
|
| >1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A* | Back alignment and structure |
|---|
Probab=97.65 E-value=3.4e-06 Score=78.66 Aligned_cols=46 Identities=13% Similarity=0.144 Sum_probs=40.0
Q ss_pred HHHhhcCCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeec
Q 020346 152 SLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (327)
Q Consensus 152 ~l~~~l~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~ 210 (327)
++++. +|++++|+|+||+||||++..|++ ++.+..|+|.+.+.++.
T Consensus 92 ~i~~~-~~~~i~i~g~~G~GKTT~~~~la~------------~~~~~~~~v~l~~~d~~ 137 (295)
T 1ls1_A 92 LPVLK-DRNLWFLVGLQGSGKTTTAAKLAL------------YYKGKGRRPLLVAADTQ 137 (295)
T ss_dssp CCCCC-SSEEEEEECCTTTTHHHHHHHHHH------------HHHHTTCCEEEEECCSS
T ss_pred eeecC-CCeEEEEECCCCCCHHHHHHHHHH------------HHHHcCCeEEEecCCcc
Confidence 45555 789999999999999999999999 88888999999887654
|
| >1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* | Back alignment and structure |
|---|
Probab=97.65 E-value=5.3e-05 Score=62.95 Aligned_cols=23 Identities=35% Similarity=0.614 Sum_probs=20.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHcCC
Q 020346 160 QTTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 160 ~~v~lvG~sG~GKSTLln~L~g~ 182 (327)
-.++|+|++|||||||+|.|.+.
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 36999999999999999999983
|
| >3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A* | Back alignment and structure |
|---|
Probab=97.65 E-value=6.4e-05 Score=63.00 Aligned_cols=21 Identities=38% Similarity=0.434 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHcC
Q 020346 161 TTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g 181 (327)
.++|+|++|||||||+|.|.+
T Consensus 8 ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 689999999999999999996
|
| >1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A | Back alignment and structure |
|---|
Probab=97.64 E-value=4.2e-05 Score=63.01 Aligned_cols=22 Identities=36% Similarity=0.638 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHcCC
Q 020346 161 TTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g~ 182 (327)
.++|+|++|||||||+|.|.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5899999999999999999973
|
| >1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=97.64 E-value=7.7e-05 Score=63.94 Aligned_cols=22 Identities=32% Similarity=0.533 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHcCC
Q 020346 161 TTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g~ 182 (327)
.++|+|++|||||||+|.|.+.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999984
|
| >2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... | Back alignment and structure |
|---|
Probab=97.64 E-value=7.3e-05 Score=60.93 Aligned_cols=22 Identities=45% Similarity=0.640 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHcCC
Q 020346 161 TTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g~ 182 (327)
.++++|++|||||||+|.|.+.
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999873
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=97.63 E-value=1.6e-05 Score=74.73 Aligned_cols=41 Identities=20% Similarity=0.147 Sum_probs=36.4
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeec
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~ 210 (327)
++++++|+|+|||||||++..|++ ++.++.|+|.+.+.++.
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~------------~l~~~g~kV~lv~~D~~ 143 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAK------------MFVDEGKSVVLAAADTF 143 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH------------HHHHTTCCEEEEEECTT
T ss_pred CCeEEEEEcCCCChHHHHHHHHHH------------HHHhcCCEEEEEccccc
Confidence 578999999999999999999999 88888889988776653
|
| >2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.63 E-value=6.9e-05 Score=63.70 Aligned_cols=22 Identities=36% Similarity=0.750 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHcCC
Q 020346 161 TTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g~ 182 (327)
.++|+|++|||||||+|.|.+.
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6899999999999999999983
|
| >2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=97.63 E-value=7.4e-05 Score=65.83 Aligned_cols=24 Identities=33% Similarity=0.613 Sum_probs=21.7
Q ss_pred CCEEEEEcCCCCCHHHHHHHHcCC
Q 020346 159 DQTTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 159 g~~v~lvG~sG~GKSTLln~L~g~ 182 (327)
.-.++|+|++|||||||+|.|.+.
T Consensus 29 ~~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 29 KKTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp SEEEEEECSTTSSHHHHHHHHTTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 357999999999999999999983
|
| >3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=97.62 E-value=1e-05 Score=81.96 Aligned_cols=41 Identities=29% Similarity=0.373 Sum_probs=35.8
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCccccccccccccc-ce-eecceeec
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILG-SK-WFEDQRVG 210 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G-~i-~~~g~~v~ 210 (327)
+|++++|+|+||||||||+++|++ .+.|++| ++ +++|..+.
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~------------~L~~~~G~~i~~lDgD~~~ 410 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAA------------RLMEMGGRCVTLLDGDIVR 410 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHH------------HHHTTCSSCEEEESSHHHH
T ss_pred cceEEEEECCCCChHHHHHHHHHH------------hhcccCCceEEEECCcHHH
Confidence 789999999999999999999999 8888887 67 48886653
|
| >2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* | Back alignment and structure |
|---|
Probab=97.62 E-value=6.5e-05 Score=62.39 Aligned_cols=22 Identities=36% Similarity=0.490 Sum_probs=20.5
Q ss_pred CEEEEEcCCCCCHHHHHHHHcC
Q 020346 160 QTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 160 ~~v~lvG~sG~GKSTLln~L~g 181 (327)
-.++|+|++|||||||+|.|.+
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~ 36 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMY 36 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 4699999999999999999987
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A | Back alignment and structure |
|---|
Probab=97.62 E-value=3.2e-05 Score=74.20 Aligned_cols=22 Identities=41% Similarity=0.530 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHcCC
Q 020346 161 TTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g~ 182 (327)
+++|+|+||||||||+|.|.|.
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~ 202 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGL 202 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 4999999999999999999994
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=97.62 E-value=1.9e-05 Score=73.73 Aligned_cols=40 Identities=18% Similarity=0.194 Sum_probs=34.6
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCccccccccccccc-ceeecceee
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILG-SKWFEDQRV 209 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G-~i~~~g~~v 209 (327)
+|++++|+|+|||||||+++.|++ ++.|++| +|.+-+.++
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~------------~l~~~~G~~V~lv~~D~ 144 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAA------------ISMLEKHKKIAFITTDT 144 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHH------------HHHHTTCCCEEEEECCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH------------HHHHhcCCEEEEEecCc
Confidence 688999999999999999999999 8888888 677666554
|
| >2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.61 E-value=7.6e-05 Score=63.79 Aligned_cols=22 Identities=36% Similarity=0.759 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHcCC
Q 020346 161 TTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g~ 182 (327)
.++|+|++|||||||+|.|.+.
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999983
|
| >3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=97.60 E-value=6.2e-05 Score=63.59 Aligned_cols=23 Identities=43% Similarity=0.608 Sum_probs=21.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHcCC
Q 020346 160 QTTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 160 ~~v~lvG~sG~GKSTLln~L~g~ 182 (327)
-.++|+|++|||||||+|.|.+.
T Consensus 8 ~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 8 YKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 36899999999999999999984
|
| >3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.60 E-value=7.1e-05 Score=63.46 Aligned_cols=22 Identities=36% Similarity=0.641 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHcCC
Q 020346 161 TTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g~ 182 (327)
.++|+|++|||||||+|.|.+.
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6999999999999999999983
|
| >3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A* | Back alignment and structure |
|---|
Probab=97.59 E-value=3.7e-05 Score=63.53 Aligned_cols=21 Identities=43% Similarity=0.719 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHcC
Q 020346 161 TTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g 181 (327)
.++|+|++|||||||+|.|.+
T Consensus 4 ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999999987
|
| >1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* | Back alignment and structure |
|---|
Probab=97.59 E-value=5.4e-05 Score=64.22 Aligned_cols=24 Identities=25% Similarity=0.530 Sum_probs=21.6
Q ss_pred CCEEEEEcCCCCCHHHHHHHHcCC
Q 020346 159 DQTTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 159 g~~v~lvG~sG~GKSTLln~L~g~ 182 (327)
.-.++|+|++|||||||+|.|.+.
T Consensus 16 ~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 16 EVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCCS
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 347999999999999999999983
|
| >2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* | Back alignment and structure |
|---|
Probab=97.58 E-value=8.2e-05 Score=63.13 Aligned_cols=22 Identities=27% Similarity=0.504 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHcCC
Q 020346 161 TTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g~ 182 (327)
.++|+|++|||||||+|.|.+.
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999999983
|
| >2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.58 E-value=8.7e-05 Score=63.41 Aligned_cols=23 Identities=35% Similarity=0.579 Sum_probs=20.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHcCC
Q 020346 160 QTTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 160 ~~v~lvG~sG~GKSTLln~L~g~ 182 (327)
-.++|+|++|||||||+|.|.+.
T Consensus 15 ~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 15 HKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 47999999999999999999973
|
| >1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=97.58 E-value=7.8e-05 Score=63.03 Aligned_cols=23 Identities=43% Similarity=0.657 Sum_probs=21.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHcCC
Q 020346 160 QTTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 160 ~~v~lvG~sG~GKSTLln~L~g~ 182 (327)
-.++|+|++|||||||+|.|.+.
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 47999999999999999999983
|
| >2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* | Back alignment and structure |
|---|
Probab=97.57 E-value=9.4e-05 Score=61.54 Aligned_cols=23 Identities=43% Similarity=0.592 Sum_probs=20.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHcCC
Q 020346 160 QTTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 160 ~~v~lvG~sG~GKSTLln~L~g~ 182 (327)
-.++|+|++|||||||+|.|.+.
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 36899999999999999999983
|
| >3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A | Back alignment and structure |
|---|
Probab=97.57 E-value=1.4e-05 Score=80.62 Aligned_cols=62 Identities=23% Similarity=0.321 Sum_probs=49.2
Q ss_pred cCCceeeccCcchhhHHHHHhhcCCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeeccee
Q 020346 135 WGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQR 208 (327)
Q Consensus 135 ~~~~~~~~s~~~~~~l~~l~~~l~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~ 208 (327)
.|.+.+...+....++.++++.++|..++|+||||+|||||+++|.+ ...+..|.|.+.+..
T Consensus 84 ~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~------------~l~~~~~~i~~~~~~ 145 (543)
T 3m6a_A 84 HGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAK------------SLGRKFVRISLGGVR 145 (543)
T ss_dssp SSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHH------------HHTCEEEEECCCC--
T ss_pred ccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHH------------hcCCCeEEEEecccc
Confidence 35555555555666778888888999999999999999999999999 777888888877643
|
| >2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* | Back alignment and structure |
|---|
Probab=97.57 E-value=7.2e-05 Score=62.87 Aligned_cols=22 Identities=27% Similarity=0.593 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHcCC
Q 020346 161 TTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g~ 182 (327)
.++|+|++|||||||+|.|.+.
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999999873
|
| >2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* | Back alignment and structure |
|---|
Probab=97.56 E-value=8.3e-05 Score=63.98 Aligned_cols=22 Identities=36% Similarity=0.644 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHcCC
Q 020346 161 TTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g~ 182 (327)
.++|+|++|||||||+|.|.+.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999983
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=97.56 E-value=2.5e-05 Score=73.27 Aligned_cols=55 Identities=20% Similarity=0.141 Sum_probs=34.5
Q ss_pred cchhhHHHHHhhc----CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeec
Q 020346 145 ESKLGLDSLLQRL----RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (327)
Q Consensus 145 ~~~~~l~~l~~~l----~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~ 210 (327)
++..+++.+...+ +...+.|.||||+|||||+++|++. ++.|+.|.+.++|.+..
T Consensus 18 g~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~-----------l~~~~~g~i~~~~~~~~ 76 (354)
T 1sxj_E 18 HNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLES-----------IFGPGVYRLKIDVRQFV 76 (354)
T ss_dssp SCHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHH-----------HSCTTCCC---------
T ss_pred CCHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHH-----------HcCCCCCeEEecceeec
Confidence 3455555555544 2223999999999999999999982 57889999999887654
|
| >3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A* | Back alignment and structure |
|---|
Probab=97.55 E-value=3e-05 Score=77.05 Aligned_cols=25 Identities=40% Similarity=0.594 Sum_probs=21.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcCC
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g~ 182 (327)
.|-.++|+|++|||||||+|.|.+.
T Consensus 232 ~~~kV~ivG~~nvGKSSLln~L~~~ 256 (476)
T 3gee_A 232 EGVSTVIAGKPNAGKSTLLNTLLGQ 256 (476)
T ss_dssp HCEEEEEECCTTSSHHHHHHHCC--
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3567999999999999999999984
|
| >2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* | Back alignment and structure |
|---|
Probab=97.55 E-value=0.00011 Score=61.52 Aligned_cols=23 Identities=35% Similarity=0.579 Sum_probs=21.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHcCC
Q 020346 160 QTTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 160 ~~v~lvG~sG~GKSTLln~L~g~ 182 (327)
-.++|+|++|||||||+|.|.+.
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhhC
Confidence 47999999999999999999973
|
| >2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* | Back alignment and structure |
|---|
Probab=97.55 E-value=8.2e-05 Score=62.14 Aligned_cols=23 Identities=35% Similarity=0.530 Sum_probs=20.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHcCC
Q 020346 160 QTTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 160 ~~v~lvG~sG~GKSTLln~L~g~ 182 (327)
-.++|+|++|||||||+|.|.+.
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 36899999999999999999983
|
| >1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A | Back alignment and structure |
|---|
Probab=97.55 E-value=4e-05 Score=74.01 Aligned_cols=35 Identities=23% Similarity=0.300 Sum_probs=31.8
Q ss_pred hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcC
Q 020346 147 KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 147 ~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g 181 (327)
..+++++++.+ +|+.++|+||||+|||||+++|++
T Consensus 156 ~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 156 YDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp HHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHh
Confidence 35788888887 889999999999999999999998
|
| >1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* | Back alignment and structure |
|---|
Probab=97.55 E-value=9.1e-05 Score=63.45 Aligned_cols=23 Identities=43% Similarity=0.697 Sum_probs=20.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHcCC
Q 020346 160 QTTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 160 ~~v~lvG~sG~GKSTLln~L~g~ 182 (327)
-.++|+|++|||||||+|.|.+.
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 9 LKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 36899999999999999999983
|
| >1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A | Back alignment and structure |
|---|
Probab=97.54 E-value=1.2e-05 Score=75.91 Aligned_cols=47 Identities=13% Similarity=0.193 Sum_probs=39.8
Q ss_pred HHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecc
Q 020346 153 LLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (327)
Q Consensus 153 l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~ 211 (327)
+++.. ++++++|+|+||+||||++..|++ ++.+..|+|.+.+.++..
T Consensus 98 l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~------------~l~~~g~kVllid~D~~r 145 (320)
T 1zu4_A 98 IDFKENRLNIFMLVGVNGTGKTTSLAKMAN------------YYAELGYKVLIAAADTFR 145 (320)
T ss_dssp CCCCTTSCEEEEEESSTTSSHHHHHHHHHH------------HHHHTTCCEEEEECCCSC
T ss_pred ccccCCCCeEEEEECCCCCCHHHHHHHHHH------------HHHHCCCeEEEEeCCCcc
Confidence 44443 688999999999999999999999 888899999998877643
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=97.54 E-value=3.6e-05 Score=75.31 Aligned_cols=22 Identities=50% Similarity=0.693 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHcCC
Q 020346 161 TTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g~ 182 (327)
.++|||.||||||||+|.|.+.
T Consensus 3 ~v~ivG~pnvGKStL~nrl~~~ 24 (439)
T 1mky_A 3 TVLIVGRPNVGKSTLFNKLVKK 24 (439)
T ss_dssp EEEEECCTTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999984
|
| >1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* | Back alignment and structure |
|---|
Probab=97.54 E-value=9e-05 Score=62.87 Aligned_cols=22 Identities=27% Similarity=0.483 Sum_probs=20.5
Q ss_pred CEEEEEcCCCCCHHHHHHHHcC
Q 020346 160 QTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 160 ~~v~lvG~sG~GKSTLln~L~g 181 (327)
-.++|+|++|||||||+|.|.+
T Consensus 21 ~ki~v~G~~~~GKSsli~~l~~ 42 (189)
T 1z06_A 21 FKIIVIGDSNVGKTCLTYRFCA 42 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHc
Confidence 4799999999999999999987
|
| >3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* | Back alignment and structure |
|---|
Probab=97.54 E-value=0.00012 Score=61.48 Aligned_cols=22 Identities=32% Similarity=0.546 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHcCC
Q 020346 161 TTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g~ 182 (327)
.++|+|++|||||||+|.|.+.
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999973
|
| >1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=97.54 E-value=2.7e-05 Score=65.38 Aligned_cols=23 Identities=35% Similarity=0.627 Sum_probs=21.7
Q ss_pred CCEEEEEcCCCCCHHHHHHHHcC
Q 020346 159 DQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 159 g~~v~lvG~sG~GKSTLln~L~g 181 (327)
+..++|+|+||||||||.+.|.+
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 57899999999999999999998
|
| >2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.54 E-value=1.1e-05 Score=80.81 Aligned_cols=119 Identities=16% Similarity=0.072 Sum_probs=63.0
Q ss_pred hhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcceeeEEE
Q 020346 148 LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHV 226 (327)
Q Consensus 148 ~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~tt~~i 226 (327)
..++++++.+ +| +.|+||||+|||||+++|.+ .. ..+.+.+++.++..... +. ....+
T Consensus 54 ~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~------------~~--~~~~i~i~g~~~~~~~~--g~---~~~~v 112 (499)
T 2dhr_A 54 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAG------------EA--RVPFITASGSDFVEMFV--GV---GAARV 112 (499)
T ss_dssp GGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHH------------HT--TCCEEEEEGGGGTSSCT--TH---HHHHH
T ss_pred hhhhhccCCCCce--EEEECCCCCCHHHHHHHHHH------------Hh--CCCEEEEehhHHHHhhh--hh---HHHHH
Confidence 3455555555 34 99999999999999999998 22 25567776655432210 10 00111
Q ss_pred EEEEcc-----CCCeEEeCcccCCcccc-c--cCHhHHhhhhHHHHHhcCccccccccccccccccCCce
Q 020346 227 SLLPLS-----GGGYLADTPGFNQPSLL-K--VTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGC 288 (327)
Q Consensus 227 ~~v~q~-----~~~~i~Dtpg~~~~~l~-~--~~~~~l~~~~~~~~~~LSgGq~q~~~~~~~~h~~ep~~ 288 (327)
..+++. +...++|.......... . -...+....+..+...||||+.++..+..++ .+.|..
T Consensus 113 ~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~~viviAa-tn~p~~ 181 (499)
T 2dhr_A 113 RDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAA-TNRPDI 181 (499)
T ss_dssp HHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSSCCCEEEEC-CSCGGG
T ss_pred HHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccCccEEEEEe-cCChhh
Confidence 122222 12345565432211111 0 0112223444455566999999887666655 555543
|
| >4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=97.54 E-value=7.8e-05 Score=64.75 Aligned_cols=22 Identities=32% Similarity=0.608 Sum_probs=20.5
Q ss_pred CEEEEEcCCCCCHHHHHHHHcC
Q 020346 160 QTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 160 ~~v~lvG~sG~GKSTLln~L~g 181 (327)
-.++|+|++|||||||+|.|.+
T Consensus 12 ~ki~vvG~~~~GKSsli~~l~~ 33 (218)
T 4djt_A 12 YKICLIGDGGVGKTTYINRVLD 33 (218)
T ss_dssp EEEEEECCTTSSHHHHHCBCTT
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 3689999999999999999997
|
| >2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=97.53 E-value=0.00012 Score=61.09 Aligned_cols=23 Identities=35% Similarity=0.644 Sum_probs=20.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHcCC
Q 020346 160 QTTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 160 ~~v~lvG~sG~GKSTLln~L~g~ 182 (327)
-.++|+|++|||||||+|.|.+.
T Consensus 11 ~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 11 FKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 36899999999999999999983
|
| >3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=97.53 E-value=8.9e-05 Score=63.80 Aligned_cols=24 Identities=33% Similarity=0.519 Sum_probs=21.5
Q ss_pred CCEEEEEcCCCCCHHHHHHHHcCC
Q 020346 159 DQTTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 159 g~~v~lvG~sG~GKSTLln~L~g~ 182 (327)
.-.++|+|++|||||||+|.|.+.
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 357999999999999999999973
|
| >1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* | Back alignment and structure |
|---|
Probab=97.51 E-value=0.00011 Score=61.88 Aligned_cols=24 Identities=13% Similarity=0.455 Sum_probs=21.7
Q ss_pred CCEEEEEcCCCCCHHHHHHHHcCC
Q 020346 159 DQTTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 159 g~~v~lvG~sG~GKSTLln~L~g~ 182 (327)
.-.++|+|++|||||||+|.|.+.
T Consensus 18 ~~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 18 ELRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp CEEEEEECSTTSSHHHHHHHHTTC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 457999999999999999999983
|
| >3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* | Back alignment and structure |
|---|
Probab=97.49 E-value=0.00012 Score=61.87 Aligned_cols=23 Identities=43% Similarity=0.587 Sum_probs=21.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHcCC
Q 020346 160 QTTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 160 ~~v~lvG~sG~GKSTLln~L~g~ 182 (327)
-.++|+|.+|||||||+|.|.+.
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 47999999999999999999973
|
| >1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* | Back alignment and structure |
|---|
Probab=97.48 E-value=8.2e-05 Score=61.41 Aligned_cols=22 Identities=27% Similarity=0.579 Sum_probs=20.5
Q ss_pred CEEEEEcCCCCCHHHHHHHHcC
Q 020346 160 QTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 160 ~~v~lvG~sG~GKSTLln~L~g 181 (327)
-.++|+|++|||||||+|.|.+
T Consensus 8 ~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 8 MRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 4699999999999999999987
|
| >1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* | Back alignment and structure |
|---|
Probab=97.47 E-value=6.5e-05 Score=62.59 Aligned_cols=23 Identities=39% Similarity=0.660 Sum_probs=20.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHcCC
Q 020346 160 QTTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 160 ~~v~lvG~sG~GKSTLln~L~g~ 182 (327)
-.++|+|++|||||||+|.|.+.
T Consensus 9 ~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 9 LKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 36899999999999999999873
|
| >2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* | Back alignment and structure |
|---|
Probab=97.47 E-value=2.7e-05 Score=66.19 Aligned_cols=24 Identities=38% Similarity=0.500 Sum_probs=22.6
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcC
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g 181 (327)
+|..++|+|++||||||+.+.|.+
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999999987
|
| >2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* | Back alignment and structure |
|---|
Probab=97.47 E-value=9.7e-05 Score=62.88 Aligned_cols=22 Identities=36% Similarity=0.665 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHcCC
Q 020346 161 TTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g~ 182 (327)
.++|+|++|||||||+|.|.+.
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6899999999999999999973
|
| >2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.47 E-value=9.1e-05 Score=63.56 Aligned_cols=24 Identities=33% Similarity=0.469 Sum_probs=21.5
Q ss_pred CCEEEEEcCCCCCHHHHHHHHcCC
Q 020346 159 DQTTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 159 g~~v~lvG~sG~GKSTLln~L~g~ 182 (327)
.-.++|+|++|||||||+|.|.+.
T Consensus 28 ~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 28 AYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CeEEEEECcCCCCHHHHHHHHHhC
Confidence 357999999999999999999973
|
| >2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.46 E-value=0.00012 Score=63.05 Aligned_cols=23 Identities=26% Similarity=0.560 Sum_probs=20.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHcCC
Q 020346 160 QTTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 160 ~~v~lvG~sG~GKSTLln~L~g~ 182 (327)
-.++|+|++|||||||+|.|.+.
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 26 FKFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEEESTTSSHHHHHHHHHC-
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 36899999999999999999983
|
| >1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=97.45 E-value=8.3e-05 Score=62.32 Aligned_cols=23 Identities=26% Similarity=0.573 Sum_probs=21.2
Q ss_pred CCEEEEEcCCCCCHHHHHHHHcC
Q 020346 159 DQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 159 g~~v~lvG~sG~GKSTLln~L~g 181 (327)
.-.++|+|++|||||||+|.|.+
T Consensus 18 ~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 18 ELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCC
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 45799999999999999999997
|
| >2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A* | Back alignment and structure |
|---|
Probab=97.44 E-value=7.7e-05 Score=62.12 Aligned_cols=25 Identities=36% Similarity=0.610 Sum_probs=22.3
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcCC
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g~ 182 (327)
+...++|+|++|||||||+|.|.+.
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3567999999999999999999984
|
| >2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=97.44 E-value=0.00015 Score=61.51 Aligned_cols=22 Identities=41% Similarity=0.603 Sum_probs=20.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHcC
Q 020346 160 QTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 160 ~~v~lvG~sG~GKSTLln~L~g 181 (327)
-.++|+|++|||||||+|.|.+
T Consensus 9 ~ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 9 YRVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHc
Confidence 4799999999999999999987
|
| >2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.43 E-value=6.1e-05 Score=63.95 Aligned_cols=24 Identities=33% Similarity=0.667 Sum_probs=21.6
Q ss_pred CCEEEEEcCCCCCHHHHHHHHcCC
Q 020346 159 DQTTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 159 g~~v~lvG~sG~GKSTLln~L~g~ 182 (327)
.-.++|+|++|||||||+|.|.+.
T Consensus 48 ~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 48 QPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 347999999999999999999983
|
| >3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.43 E-value=0.00013 Score=62.63 Aligned_cols=24 Identities=33% Similarity=0.432 Sum_probs=21.6
Q ss_pred CCEEEEEcCCCCCHHHHHHHHcCC
Q 020346 159 DQTTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 159 g~~v~lvG~sG~GKSTLln~L~g~ 182 (327)
.-.++|+|.+|||||||+|.|.+.
T Consensus 24 ~~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 24 YRKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cEEEEEECCCCcCHHHHHHHHHhC
Confidence 357999999999999999999983
|
| >3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* | Back alignment and structure |
|---|
Probab=97.43 E-value=0.00017 Score=60.55 Aligned_cols=23 Identities=39% Similarity=0.521 Sum_probs=21.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHcCC
Q 020346 160 QTTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 160 ~~v~lvG~sG~GKSTLln~L~g~ 182 (327)
-.++|+|++|||||||+|.|.+.
T Consensus 19 ~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 19 YKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 47899999999999999999973
|
| >2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.43 E-value=0.00011 Score=74.30 Aligned_cols=24 Identities=25% Similarity=0.401 Sum_probs=22.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHcCCC
Q 020346 160 QTTVIVGPSGVGKSSLINALRSSP 183 (327)
Q Consensus 160 ~~v~lvG~sG~GKSTLln~L~g~~ 183 (327)
-.++|+|.+|||||||+|.|+|..
T Consensus 66 ~~V~vvG~~n~GKSTLIN~Llg~~ 89 (550)
T 2qpt_A 66 PMVLVAGQYSTGKTSFIQYLLEQE 89 (550)
T ss_dssp CEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCc
Confidence 589999999999999999999954
|
| >2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 | Back alignment and structure |
|---|
Probab=97.42 E-value=0.00015 Score=62.71 Aligned_cols=22 Identities=27% Similarity=0.403 Sum_probs=20.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHcC
Q 020346 160 QTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 160 ~~v~lvG~sG~GKSTLln~L~g 181 (327)
-.++|+|++|||||||+|.|.+
T Consensus 8 ~ki~vvG~~~~GKTsli~~l~~ 29 (214)
T 2fh5_B 8 RAVLFVGLCDSGKTLLFVRLLT 29 (214)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4789999999999999999997
|
| >4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927} | Back alignment and structure |
|---|
Probab=97.41 E-value=0.00017 Score=61.18 Aligned_cols=24 Identities=25% Similarity=0.531 Sum_probs=21.7
Q ss_pred CCEEEEEcCCCCCHHHHHHHHcCC
Q 020346 159 DQTTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 159 g~~v~lvG~sG~GKSTLln~L~g~ 182 (327)
...++|+|.+|||||||+|.|.+.
T Consensus 17 ~~ki~v~G~~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 17 KLQVVMCGLDNSGKTTIINQVKPA 40 (199)
T ss_dssp EEEEEEECCTTSCHHHHHHHHSCC
T ss_pred CcEEEEECCCCCCHHHHHHHHhcC
Confidence 357999999999999999999984
|
| >2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* | Back alignment and structure |
|---|
Probab=97.41 E-value=0.0001 Score=61.40 Aligned_cols=21 Identities=29% Similarity=0.526 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHcC
Q 020346 161 TTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g 181 (327)
.++|+|++|||||||+|.|.+
T Consensus 8 ki~v~G~~~~GKssl~~~l~~ 28 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQ 28 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHG
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 689999999999999999998
|
| >3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ... | Back alignment and structure |
|---|
Probab=97.39 E-value=8.2e-05 Score=64.93 Aligned_cols=54 Identities=20% Similarity=0.265 Sum_probs=0.0
Q ss_pred EEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcceeeEEEEEEEccC---CCeE
Q 020346 161 TTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSG---GGYL 237 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~tt~~i~~v~q~~---~~~i 237 (327)
.++|+|.+|||||||+|.++. +..........+ ++.....+.... ...+
T Consensus 17 ki~v~G~~~~GKSsli~~~~~------------------------~~~~~~~~~t~~----~~~~~~~~~~~~~~~~~~i 68 (221)
T 3gj0_A 17 KLVLVGDGGTGKTTFVKRHLT------------------------GEFEKKYVATLG----VEVHPLVFHTNRGPIKFNV 68 (221)
T ss_dssp EEEEEECTTSSHHHHHTTBHH------------------------HHHTCEEETTTT----EEEEEEEEEETTEEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHc------------------------CCCCCCCCCccc----eeEEEEEEEECCEEEEEEE
Q ss_pred EeCcc
Q 020346 238 ADTPG 242 (327)
Q Consensus 238 ~Dtpg 242 (327)
+||||
T Consensus 69 ~Dt~G 73 (221)
T 3gj0_A 69 WDTAG 73 (221)
T ss_dssp EEECS
T ss_pred EeCCC
|
| >1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... | Back alignment and structure |
|---|
Probab=97.39 E-value=0.00011 Score=60.19 Aligned_cols=21 Identities=24% Similarity=0.532 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHcC
Q 020346 161 TTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g 181 (327)
.++|+|++|||||||+|.|.+
T Consensus 2 ki~~~G~~~~GKssl~~~l~~ 22 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKL 22 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999999987
|
| >2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} | Back alignment and structure |
|---|
Probab=97.39 E-value=6.8e-05 Score=65.25 Aligned_cols=24 Identities=50% Similarity=0.754 Sum_probs=22.9
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcC
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g 181 (327)
+|..++|+||||||||||.+.|..
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~ 34 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLS 34 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHH
Confidence 789999999999999999999986
|
| >2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=97.39 E-value=0.00018 Score=62.39 Aligned_cols=22 Identities=32% Similarity=0.655 Sum_probs=20.3
Q ss_pred CEEEEEcCCCCCHHHHHHHHcC
Q 020346 160 QTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 160 ~~v~lvG~sG~GKSTLln~L~g 181 (327)
-.++|+|++|||||||+|.|.+
T Consensus 27 ~ki~lvG~~~vGKSsLi~~l~~ 48 (201)
T 2ew1_A 27 FKIVLIGNAGVGKTCLVRRFTQ 48 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHHh
Confidence 3689999999999999999987
|
| >2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.38 E-value=0.0002 Score=60.66 Aligned_cols=23 Identities=26% Similarity=0.547 Sum_probs=21.4
Q ss_pred CCEEEEEcCCCCCHHHHHHHHcC
Q 020346 159 DQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 159 g~~v~lvG~sG~GKSTLln~L~g 181 (327)
.-.++|+|.+|||||||+|.|.+
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~ 43 (190)
T 2h57_A 21 EVHVLCLGLDNSGKTTIINKLKP 43 (190)
T ss_dssp CEEEEEEECTTSSHHHHHHHTSC
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 45799999999999999999998
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* | Back alignment and structure |
|---|
Probab=97.38 E-value=0.0001 Score=76.16 Aligned_cols=77 Identities=23% Similarity=0.264 Sum_probs=44.7
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccC-CCccee-eEEEEEEEccCCC
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKS-GRGKHT-TRHVSLLPLSGGG 235 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~-~~g~~t-t~~i~~v~q~~~~ 235 (327)
++..++|+|++|+|||||++.|++.. ...+..|+| .+|..+....... .++-.. .....+.......
T Consensus 8 ~~~~i~IiG~~gaGKTTLl~~L~~~~----------~~~~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~ 76 (665)
T 2dy1_A 8 MIRTVALVGHAGSGKTTLTEALLYKT----------GAKERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRV 76 (665)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHT----------TSSSSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEE
T ss_pred CCcEEEEECCCCChHHHHHHHHHHhc----------CCCCcccee-cCCcccccCCHHHHhcCCeEEecceEEeeCCEEE
Confidence 57899999999999999999999722 112366777 5555443322100 001001 1222222222245
Q ss_pred eEEeCcccCC
Q 020346 236 YLADTPGFNQ 245 (327)
Q Consensus 236 ~i~Dtpg~~~ 245 (327)
.++||||...
T Consensus 77 nliDTpG~~~ 86 (665)
T 2dy1_A 77 FLLDAPGYGD 86 (665)
T ss_dssp EEEECCCSGG
T ss_pred EEEeCCCccc
Confidence 7889999765
|
| >1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... | Back alignment and structure |
|---|
Probab=97.38 E-value=0.00018 Score=60.13 Aligned_cols=21 Identities=33% Similarity=0.596 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHcC
Q 020346 161 TTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g 181 (327)
.++|+|++|||||||+|.|.+
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~ 27 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTT 27 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 689999999999999999986
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* | Back alignment and structure |
|---|
Probab=97.34 E-value=9.4e-05 Score=62.77 Aligned_cols=21 Identities=38% Similarity=0.684 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHcC
Q 020346 161 TTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g 181 (327)
.++|+|+||||||||+|.|.+
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999999998
|
| >3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A* | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00015 Score=70.50 Aligned_cols=39 Identities=21% Similarity=0.286 Sum_probs=30.6
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHc--CCCCCCCccccccccccccc-----ceeeccee
Q 020346 158 RDQTTVIVGPSGVGKSSLINALR--SSPHASDAADVDNWFEPILG-----SKWFEDQR 208 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~--g~~~~~~~~~~~~~~~p~~G-----~i~~~g~~ 208 (327)
+|++++|+|+||+|||||++.|+ + ..+|+.| .++|++..
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la~~~------------~~p~~~Gg~~~~viyid~E~ 222 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAVTC------------QIPLDIGGGEGKCLYIDTEG 222 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHT------------TSCGGGTCCSSEEEEEESSS
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHh------------ccCcccCCCCCcEEEEeCCC
Confidence 78999999999999999999554 4 5555444 67777654
|
| >2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00033 Score=66.40 Aligned_cols=25 Identities=24% Similarity=0.353 Sum_probs=22.4
Q ss_pred CCEEEEEcCCCCCHHHHHHHHcCCC
Q 020346 159 DQTTVIVGPSGVGKSSLINALRSSP 183 (327)
Q Consensus 159 g~~v~lvG~sG~GKSTLln~L~g~~ 183 (327)
--.++|+|.+|||||||+|.|.|..
T Consensus 31 ~~~I~vvG~~~~GKSSLln~L~g~~ 55 (353)
T 2x2e_A 31 LPQIAVVGGQSAGKSSVLENFVGRD 55 (353)
T ss_dssp CCEEEEECBTTSSHHHHHHTTTTSC
T ss_pred CCeEEEECCCCCCHHHHHHHHhCCC
Confidence 3579999999999999999999954
|
| >1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* | Back alignment and structure |
|---|
Probab=97.34 E-value=5.4e-05 Score=66.26 Aligned_cols=40 Identities=23% Similarity=0.219 Sum_probs=34.0
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCccccccccccccc--ceeecceee
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILG--SKWFEDQRV 209 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G--~i~~~g~~v 209 (327)
+|..++|+|++||||||+.+.|.+ .+.|..| .+++++..+
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~------------~l~~~~g~~~~~~~~d~~ 65 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEH------------QLVRDRRVHAYRLDGDNI 65 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHH------------HHHHHHCCCEEEECHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH------------HhccccCCcEEEECChHH
Confidence 789999999999999999999998 6777778 777775443
|
| >1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00018 Score=61.16 Aligned_cols=23 Identities=26% Similarity=0.434 Sum_probs=21.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHcCC
Q 020346 160 QTTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 160 ~~v~lvG~sG~GKSTLln~L~g~ 182 (327)
-.++|+|++|||||||+|.|.+.
T Consensus 23 ~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 23 MELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHcC
Confidence 47999999999999999999973
|
| >3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00016 Score=61.53 Aligned_cols=22 Identities=32% Similarity=0.391 Sum_probs=20.2
Q ss_pred CEEEEEcCCCCCHHHHHHHHcC
Q 020346 160 QTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 160 ~~v~lvG~sG~GKSTLln~L~g 181 (327)
-.++|+|++|||||||+|.+.+
T Consensus 21 ~ki~ivG~~~vGKSsL~~~~~~ 42 (184)
T 3ihw_A 21 LKVGIVGNLSSGKSALVHRYLT 42 (184)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 4799999999999999998877
|
| >2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00028 Score=60.25 Aligned_cols=56 Identities=21% Similarity=0.264 Sum_probs=0.0
Q ss_pred EEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcceeeEEEEEEEccC---CCeE
Q 020346 161 TTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSG---GGYL 237 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~tt~~i~~v~q~~---~~~i 237 (327)
.++|+|++|||||||+|.|.+ +.......... .......+..+. ...+
T Consensus 30 ki~v~G~~~vGKSsli~~l~~------------------------~~~~~~~~~t~-----~~~~~~~~~~~~~~~~~~l 80 (196)
T 2atv_A 30 KLAIFGRAGVGKSALVVRFLT------------------------KRFIWEYDPTL-----ESTYRHQATIDDEVVSMEI 80 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHH------------------------SCCCSCCCTTC-----CEEEEEEEEETTEEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHh------------------------CCCCcccCCCC-----CceEEEEEEECCEEEEEEE
Q ss_pred EeCcccCC
Q 020346 238 ADTPGFNQ 245 (327)
Q Consensus 238 ~Dtpg~~~ 245 (327)
+||||...
T Consensus 81 ~Dt~G~~~ 88 (196)
T 2atv_A 81 LDTAGQED 88 (196)
T ss_dssp EECCCCCC
T ss_pred EECCCCCc
|
| >2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00033 Score=59.83 Aligned_cols=24 Identities=33% Similarity=0.552 Sum_probs=21.3
Q ss_pred CCEEEEEcCCCCCHHHHHHHHcCC
Q 020346 159 DQTTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 159 g~~v~lvG~sG~GKSTLln~L~g~ 182 (327)
.-.++|+|++|||||||+|.|.+.
T Consensus 20 ~~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 20 GVKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 457999999999999999999983
|
| >3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A* | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00019 Score=61.04 Aligned_cols=23 Identities=35% Similarity=0.550 Sum_probs=21.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHcCC
Q 020346 160 QTTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 160 ~~v~lvG~sG~GKSTLln~L~g~ 182 (327)
-.++|+|++|||||||+|.|.+.
T Consensus 24 ~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 24 LKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 47999999999999999999983
|
| >3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.31 E-value=0.0002 Score=62.65 Aligned_cols=22 Identities=41% Similarity=0.753 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHcCC
Q 020346 161 TTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g~ 182 (327)
.++|+|++|||||||+|.|.+.
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~ 36 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKN 36 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6899999999999999999983
|
| >1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=97.31 E-value=0.00015 Score=70.27 Aligned_cols=22 Identities=32% Similarity=0.425 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHcCC
Q 020346 161 TTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g~ 182 (327)
.++|+|.+|||||||+|.|.+.
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~ 23 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLV 23 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 5899999999999999999994
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=97.30 E-value=0.00012 Score=63.61 Aligned_cols=34 Identities=32% Similarity=0.362 Sum_probs=28.1
Q ss_pred hhHHHHHh-hc-CCCEEEEEcCCCCCHHHHHHHHcC
Q 020346 148 LGLDSLLQ-RL-RDQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 148 ~~l~~l~~-~l-~g~~v~lvG~sG~GKSTLln~L~g 181 (327)
..|+.+.. -+ +|++++|+|+||+|||||++.|++
T Consensus 7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp HHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 35666654 34 899999999999999999999985
|
| >2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=97.30 E-value=0.00023 Score=61.53 Aligned_cols=24 Identities=25% Similarity=0.481 Sum_probs=21.6
Q ss_pred CCEEEEEcCCCCCHHHHHHHHcCC
Q 020346 159 DQTTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 159 g~~v~lvG~sG~GKSTLln~L~g~ 182 (327)
...++|+|++|||||||+|.|.+.
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHhcC
Confidence 347999999999999999999983
|
| >3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP} | Back alignment and structure |
|---|
Probab=97.30 E-value=4.8e-05 Score=75.29 Aligned_cols=25 Identities=48% Similarity=0.594 Sum_probs=22.3
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcCC
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g~ 182 (327)
.|-.++|+|++|||||||+|.|++.
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~ 247 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQS 247 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 3567999999999999999999983
|
| >2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* | Back alignment and structure |
|---|
Probab=97.29 E-value=0.00013 Score=61.20 Aligned_cols=21 Identities=29% Similarity=0.618 Sum_probs=9.4
Q ss_pred EEEEEcCCCCCHHHHHHHHcC
Q 020346 161 TTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g 181 (327)
.++|+|++|||||||+|.|.+
T Consensus 10 ki~v~G~~~~GKssl~~~l~~ 30 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSE 30 (183)
T ss_dssp EEEEECCCCC-----------
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999999997
|
| >3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=97.29 E-value=8e-05 Score=63.39 Aligned_cols=22 Identities=32% Similarity=0.475 Sum_probs=20.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHcC
Q 020346 160 QTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 160 ~~v~lvG~sG~GKSTLln~L~g 181 (327)
-.++|+|++|||||||+|.|.+
T Consensus 24 ~ki~v~G~~~~GKSsli~~l~~ 45 (191)
T 3dz8_A 24 FKLLIIGNSSVGKTSFLFRYAD 45 (191)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHhc
Confidence 3699999999999999999998
|
| >2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.29 E-value=0.00031 Score=61.17 Aligned_cols=23 Identities=35% Similarity=0.603 Sum_probs=20.7
Q ss_pred CEEEEEcCCCCCHHHHHHHHcCC
Q 020346 160 QTTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 160 ~~v~lvG~sG~GKSTLln~L~g~ 182 (327)
-.++|+|++|||||||+|.|.+.
T Consensus 35 ~ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 35 VKVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 47999999999999999999983
|
| >2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} | Back alignment and structure |
|---|
Probab=97.28 E-value=0.0002 Score=60.60 Aligned_cols=23 Identities=22% Similarity=0.427 Sum_probs=21.1
Q ss_pred CCEEEEEcCCCCCHHHHHHHHcC
Q 020346 159 DQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 159 g~~v~lvG~sG~GKSTLln~L~g 181 (327)
.-.++|+|++|||||||+|.|.+
T Consensus 22 ~~~i~v~G~~~~GKssli~~l~~ 44 (189)
T 2x77_A 22 KIRVLMLGLDNAGKTSILYRLHL 44 (189)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHc
Confidence 35799999999999999999987
|
| >2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00012 Score=63.57 Aligned_cols=24 Identities=25% Similarity=0.368 Sum_probs=23.0
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcC
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g 181 (327)
++.+++|+|+||||||||.+.|.+
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~ 43 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQK 43 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 688999999999999999999998
|
| >2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00012 Score=61.13 Aligned_cols=55 Identities=15% Similarity=0.157 Sum_probs=0.0
Q ss_pred EEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcceeeEEEEEEEccCCCeEEeC
Q 020346 161 TTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADT 240 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~tt~~i~~v~q~~~~~i~Dt 240 (327)
.++|+|++|||||||+|.+.+ ..... ..+..+......+.+-.......++||
T Consensus 9 ki~~vG~~~vGKTsli~~l~~-------------------------~~~~~--~~~t~~~~~~~~~~~~~~~~~l~i~Dt 61 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLT-------------------------GSYQV--LEKTESEQYKKEMLVDGQTHLVLIREE 61 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHH-------------------------SCCCC--CSSCSSSEEEEEEEETTEEEEEEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHh-------------------------CCCCC--cCCCcceeEEEEEEECCEEEEEEEEEC
Q ss_pred cc
Q 020346 241 PG 242 (327)
Q Consensus 241 pg 242 (327)
||
T Consensus 62 ~G 63 (178)
T 2iwr_A 62 AG 63 (178)
T ss_dssp SS
T ss_pred CC
|
| >2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00024 Score=61.52 Aligned_cols=54 Identities=22% Similarity=0.258 Sum_probs=0.0
Q ss_pred EEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcceeeEEEEEEEccCC------
Q 020346 161 TTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGG------ 234 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~tt~~i~~v~q~~~------ 234 (327)
.++|+|++|||||||+|.|.+ +..........+ .......+..+..
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~------------------------~~~~~~~~~t~~----~~~~~~~~~~~~~~~~~~~ 78 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTD------------------------NKFNPKFITTVG----IDFREKRVVYNAQGPNGSS 78 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHC------------------------SCCCCEEEEEEE----EEEEEEEEEEEC-------
T ss_pred EEEEECcCCCCHHHHHHHHhc------------------------CCCCcCCCCcee----EEEEEEEEEECCccccccc
Q ss_pred -------CeEEeCcc
Q 020346 235 -------GYLADTPG 242 (327)
Q Consensus 235 -------~~i~Dtpg 242 (327)
..++||||
T Consensus 79 ~~~~~~~l~l~Dt~G 93 (217)
T 2f7s_A 79 GKAFKVHLQLWDTAG 93 (217)
T ss_dssp CCEEEEEEEEEEEES
T ss_pred cCceeEEEEEEECCC
|
| >1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00031 Score=59.29 Aligned_cols=22 Identities=32% Similarity=0.591 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHcCC
Q 020346 161 TTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g~ 182 (327)
.++|+|++|||||||+|.|.+.
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999983
|
| >2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A* | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00016 Score=75.01 Aligned_cols=26 Identities=27% Similarity=0.334 Sum_probs=23.7
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcCCC
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRSSP 183 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g~~ 183 (327)
.+-.++|+|++|+|||||+|+|+|..
T Consensus 68 ~~~~V~VvG~~naGKSSLlNaLlg~~ 93 (695)
T 2j69_A 68 GVFRLLVLGDMKRGKSTFLNALIGEN 93 (695)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 56789999999999999999999954
|
| >2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00017 Score=60.74 Aligned_cols=24 Identities=21% Similarity=0.527 Sum_probs=21.8
Q ss_pred CCEEEEEcCCCCCHHHHHHHHcCC
Q 020346 159 DQTTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 159 g~~v~lvG~sG~GKSTLln~L~g~ 182 (327)
.-.++|+|.+|||||||+|.|.+.
T Consensus 21 ~~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 21 EHKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 457999999999999999999983
|
| >1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00013 Score=63.26 Aligned_cols=23 Identities=35% Similarity=0.683 Sum_probs=21.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHcCC
Q 020346 160 QTTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 160 ~~v~lvG~sG~GKSTLln~L~g~ 182 (327)
-.++|+|++|||||||+|.|.+.
T Consensus 13 ~~i~~~G~~g~GKTsl~~~l~~~ 35 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSLLTLLTTD 35 (218)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 47999999999999999999983
|
| >1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00031 Score=59.40 Aligned_cols=24 Identities=21% Similarity=0.535 Sum_probs=21.9
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcC
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g 181 (327)
+.-.++|+|++|||||||+|.|.+
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 456899999999999999999997
|
| >4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A* | Back alignment and structure |
|---|
Probab=97.22 E-value=0.00028 Score=60.94 Aligned_cols=24 Identities=29% Similarity=0.512 Sum_probs=21.2
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcC
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g 181 (327)
+.-.++|+|++|||||||+|.+.+
T Consensus 29 ~~~ki~vvG~~~~GKSsLi~~l~~ 52 (204)
T 4gzl_A 29 QAIKCVVVGDGAVGKTCLLISYTT 52 (204)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEEECcCCCCHHHHHHHHHh
Confidence 456899999999999999999986
|
| >2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C | Back alignment and structure |
|---|
Probab=97.22 E-value=0.00012 Score=62.41 Aligned_cols=23 Identities=39% Similarity=0.569 Sum_probs=5.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHcCC
Q 020346 160 QTTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 160 ~~v~lvG~sG~GKSTLln~L~g~ 182 (327)
-.++|+|++|||||||+|.|.+.
T Consensus 21 ~~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 21 CKVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEEC-----------------
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 47999999999999999999984
|
| >2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* | Back alignment and structure |
|---|
Probab=97.22 E-value=0.00033 Score=59.91 Aligned_cols=24 Identities=21% Similarity=0.502 Sum_probs=21.8
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcC
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g 181 (327)
+.-.++|+|++|||||||+|.|.+
T Consensus 28 ~~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 28 KQMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCS
T ss_pred CccEEEEECCCCCCHHHHHHHHHh
Confidence 455799999999999999999987
|
| >3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00038 Score=59.15 Aligned_cols=23 Identities=30% Similarity=0.452 Sum_probs=21.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHcCC
Q 020346 160 QTTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 160 ~~v~lvG~sG~GKSTLln~L~g~ 182 (327)
-.++|+|++|||||||+|.|.+.
T Consensus 22 ~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 22 VNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCcHHHHHHHHHhC
Confidence 47999999999999999999873
|
| >2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.19 E-value=0.0003 Score=60.66 Aligned_cols=22 Identities=27% Similarity=0.594 Sum_probs=20.4
Q ss_pred CEEEEEcCCCCCHHHHHHHHcC
Q 020346 160 QTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 160 ~~v~lvG~sG~GKSTLln~L~g 181 (327)
-.++|+|++|||||||+|.|.+
T Consensus 30 ~ki~vvG~~~vGKSsli~~l~~ 51 (201)
T 2hup_A 30 FKLVLVGDASVGKTCVVQRFKT 51 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHhh
Confidence 3699999999999999999987
|
| >3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.17 E-value=8.4e-05 Score=63.81 Aligned_cols=23 Identities=35% Similarity=0.576 Sum_probs=21.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHcCC
Q 020346 160 QTTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 160 ~~v~lvG~sG~GKSTLln~L~g~ 182 (327)
-.++|+|++|||||||+|.|.+.
T Consensus 34 ~ki~vvG~~~~GKSsli~~l~~~ 56 (199)
T 3l0i_B 34 FKLLLIGDSGVGKSCLLLRFADD 56 (199)
T ss_dssp EEEEEECCTTSCCTTTTTSSBCC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999999984
|
| >1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8 | Back alignment and structure |
|---|
Probab=97.17 E-value=0.00014 Score=69.11 Aligned_cols=54 Identities=22% Similarity=0.401 Sum_probs=0.0
Q ss_pred EEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcceeeEEEEEEEcc--CCCeEEe
Q 020346 162 TVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLS--GGGYLAD 239 (327)
Q Consensus 162 v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~tt~~i~~v~q~--~~~~i~D 239 (327)
++|+|.+|||||||||.|.+.. ..+...+..+ ....++.+..+ ....++|
T Consensus 161 V~lvG~~nvGKSTLln~L~~~~-----------------------~~i~~~~ftT-----l~p~~g~v~~~~~~~~~l~D 212 (342)
T 1lnz_A 161 VGLVGFPSVGKSTLLSVVSSAK-----------------------PKIADYHFTT-----LVPNLGMVETDDGRSFVMAD 212 (342)
T ss_dssp EEEESSTTSSHHHHHHHSEEEC-----------------------CEESSTTSSC-----CCCCEEEEECSSSCEEEEEE
T ss_pred eeeeCCCCCCHHHHHHHHHcCC-----------------------CccccCCccc-----cCceEEEEEeCCCceEEEec
Q ss_pred Cccc
Q 020346 240 TPGF 243 (327)
Q Consensus 240 tpg~ 243 (327)
+||+
T Consensus 213 tPG~ 216 (342)
T 1lnz_A 213 LPGL 216 (342)
T ss_dssp HHHH
T ss_pred CCCC
|
| >2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... | Back alignment and structure |
|---|
Probab=97.16 E-value=0.00029 Score=60.53 Aligned_cols=23 Identities=30% Similarity=0.520 Sum_probs=21.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHcCC
Q 020346 160 QTTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 160 ~~v~lvG~sG~GKSTLln~L~g~ 182 (327)
-.++|+|.+|||||||+|.|.+.
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 26 KKLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 47999999999999999999983
|
| >1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=97.15 E-value=0.00017 Score=67.78 Aligned_cols=40 Identities=23% Similarity=0.292 Sum_probs=34.1
Q ss_pred ccCcchhhHHHHHhhc-CCCE--EEEEcCCCCCHHHHHHHHcC
Q 020346 142 CSVESKLGLDSLLQRL-RDQT--TVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 142 ~s~~~~~~l~~l~~~l-~g~~--v~lvG~sG~GKSTLln~L~g 181 (327)
..+++..+++.++..+ .|+. +.|.||||+||||++++|++
T Consensus 26 ~~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~ 68 (340)
T 1sxj_C 26 EVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAR 68 (340)
T ss_dssp GCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHH
T ss_pred HhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHH
Confidence 3456778889988887 6666 89999999999999999998
|
| >1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A* | Back alignment and structure |
|---|
Probab=97.14 E-value=6e-05 Score=79.39 Aligned_cols=33 Identities=21% Similarity=0.225 Sum_probs=26.9
Q ss_pred hHHHHHhhcCCCEEEEEcCCCCCHHHHHHHHcC
Q 020346 149 GLDSLLQRLRDQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 149 ~l~~l~~~l~g~~v~lvG~sG~GKSTLln~L~g 181 (327)
+++++++.-+|++++|+||||+|||||+++|.|
T Consensus 597 vlndisl~~~g~i~~ItGpNGsGKSTlLr~iag 629 (800)
T 1wb9_A 597 IANPLNLSPQRRMLIITGPNMGGKSTYMRQTAL 629 (800)
T ss_dssp CCEEEEECSSSCEEEEECCTTSSHHHHHHHHHH
T ss_pred eeecccccCCCcEEEEECCCCCChHHHHHHHHH
Confidence 334444443689999999999999999999998
|
| >1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.14 E-value=0.0002 Score=61.96 Aligned_cols=21 Identities=24% Similarity=0.436 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHcC
Q 020346 161 TTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g 181 (327)
+++|+|+|||||||+.+.|.+
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999987
|
| >1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B* | Back alignment and structure |
|---|
Probab=97.13 E-value=4.7e-05 Score=75.77 Aligned_cols=24 Identities=46% Similarity=0.627 Sum_probs=22.0
Q ss_pred CCEEEEEcCCCCCHHHHHHHHcCC
Q 020346 159 DQTTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 159 g~~v~lvG~sG~GKSTLln~L~g~ 182 (327)
|-.++|+|++|||||||+|.|.+.
T Consensus 243 ~~kV~ivG~pnvGKSSLln~L~~~ 266 (482)
T 1xzp_A 243 GLRMVIVGKPNVGKSTLLNRLLNE 266 (482)
T ss_dssp CEEEEEECCHHHHTCHHHHHHHHH
T ss_pred CCEEEEECcCCCcHHHHHHHHHCC
Confidence 468999999999999999999983
|
| >4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927} | Back alignment and structure |
|---|
Probab=97.12 E-value=0.0015 Score=55.32 Aligned_cols=88 Identities=9% Similarity=0.093 Sum_probs=58.0
Q ss_pred cccccccccccEEEEEeecCCCCCChHHHHHHHHHHHhc-----------CCCEEEEeecCCCCcHH---HHHHHHh--h
Q 020346 68 EILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAEST-----------GIPLTLALNKVELVDEE---VLNTWKS--R 131 (327)
Q Consensus 68 ~l~r~~~anvD~lliv~~~~~p~~~~~~l~r~L~~a~~~-----------~~~~~ivlnK~Dl~~~~---~~~~~~~--~ 131 (327)
.+....+.++|.+++|+++..+. +...+..++...... +.|+++|.||+|+.+.. +...... .
T Consensus 78 ~~~~~~~~~~d~ii~v~D~~~~~-s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~ 156 (199)
T 4bas_A 78 GLWETYYDNIDAVIFVVDSSDHL-RLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTT 156 (199)
T ss_dssp GGGGGGCTTCSEEEEEEETTCGG-GHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHH
T ss_pred HHHHHHHhcCCEEEEEEECCcHH-HHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcchh
Confidence 33344578999999999998653 344555555544433 88999999999998652 2222111 1
Q ss_pred h-hhcCCceeeccCcchhhHHHHHhh
Q 020346 132 L-HTWGYEPLFCSVESKLGLDSLLQR 156 (327)
Q Consensus 132 ~-~~~~~~~~~~s~~~~~~l~~l~~~ 156 (327)
+ ...++..+.+|+.+..+++++-..
T Consensus 157 ~~~~~~~~~~~~Sa~~g~gv~~l~~~ 182 (199)
T 4bas_A 157 LMGDHPFVIFASNGLKGTGVHEGFSW 182 (199)
T ss_dssp HHTTSCEEEEECBTTTTBTHHHHHHH
T ss_pred hccCCeeEEEEeeCCCccCHHHHHHH
Confidence 1 345667888999887777776544
|
| >2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* | Back alignment and structure |
|---|
Probab=97.11 E-value=0.0018 Score=54.28 Aligned_cols=88 Identities=10% Similarity=0.086 Sum_probs=58.2
Q ss_pred cccccccccccEEEEEeecCCCCCChHHHHHHHHHHHh----cCCCEEEEeecCCCCcH---HHHHHHHh--hhhhcCCc
Q 020346 68 EILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES----TGIPLTLALNKVELVDE---EVLNTWKS--RLHTWGYE 138 (327)
Q Consensus 68 ~l~r~~~anvD~lliv~~~~~p~~~~~~l~r~L~~a~~----~~~~~~ivlnK~Dl~~~---~~~~~~~~--~~~~~~~~ 138 (327)
.+.+..+.++|.+++|+++..+ .+...+..++..... .+.|+++|+||+|+.+. ++...... .+...++.
T Consensus 80 ~~~~~~~~~~d~ii~v~D~~~~-~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~ 158 (181)
T 2h17_A 80 SSWNTYYTNTEFVIVVVDSTDR-ERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWH 158 (181)
T ss_dssp CGGGGGGTTCCEEEEEEETTCT-TTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEE
T ss_pred HHHHHHhccCCEEEEEEECCCH-HHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccCCCHHHHHHHhCcccccCCceE
Confidence 3344567899999999999875 345555555554442 57899999999999763 22222211 12234567
Q ss_pred eeeccCcchhhHHHHHhh
Q 020346 139 PLFCSVESKLGLDSLLQR 156 (327)
Q Consensus 139 ~~~~s~~~~~~l~~l~~~ 156 (327)
.+.+|+.+..+++++-..
T Consensus 159 ~~~~Sa~~g~gi~~l~~~ 176 (181)
T 2h17_A 159 IQACCALTGEGLCQGLEW 176 (181)
T ss_dssp EEECBTTTTBTHHHHHHH
T ss_pred EEEccCCCCcCHHHHHHH
Confidence 788898888888776544
|
| >3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* | Back alignment and structure |
|---|
Probab=97.11 E-value=0.00037 Score=59.59 Aligned_cols=24 Identities=21% Similarity=0.311 Sum_probs=21.6
Q ss_pred CCEEEEEcCCCCCHHHHHHHHcCC
Q 020346 159 DQTTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 159 g~~v~lvG~sG~GKSTLln~L~g~ 182 (327)
.-.++|+|.+|||||||+|.|.+.
T Consensus 20 ~~ki~~vG~~~vGKTsLi~~l~~~ 43 (196)
T 3llu_A 20 KPRILLMGLRRSGKSSIQKVVFHK 43 (196)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhc
Confidence 357999999999999999999983
|
| >3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.11 E-value=0.00031 Score=59.45 Aligned_cols=102 Identities=15% Similarity=0.198 Sum_probs=55.7
Q ss_pred cccccccEEEEEeecCCCCCChHHHHHHHHHHHh---cCCCEEEEeecCCCCcHHHH--HHHHhhhhhcCCceeeccCcc
Q 020346 72 PPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES---TGIPLTLALNKVELVDEEVL--NTWKSRLHTWGYEPLFCSVES 146 (327)
Q Consensus 72 ~~~anvD~lliv~~~~~p~~~~~~l~r~L~~a~~---~~~~~~ivlnK~Dl~~~~~~--~~~~~~~~~~~~~~~~~s~~~ 146 (327)
..+.++|.+++|+++..+. +...+..++..... .+.|+++|.||+|+.+.... .........++++.+.+|+.+
T Consensus 84 ~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (196)
T 3tkl_A 84 SYYRGAHGIIVVYDVTDQE-SFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKN 162 (196)
T ss_dssp HHHTTCSEEEEEEETTCHH-HHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEEECTTT
T ss_pred HHHhhCCEEEEEEECcCHH-HHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEeCCC
Confidence 3468899999999987642 23344455443332 36789999999999754311 112233344677889999988
Q ss_pred hhhHHHHHhhc----CCCEEEEEcCCCCCHHH
Q 020346 147 KLGLDSLLQRL----RDQTTVIVGPSGVGKSS 174 (327)
Q Consensus 147 ~~~l~~l~~~l----~g~~v~lvG~sG~GKST 174 (327)
..+++.+-..+ ....----.++|++||+
T Consensus 163 g~gv~~l~~~l~~~i~~~~~~~~~~~~~~~s~ 194 (196)
T 3tkl_A 163 ATNVEQSFMTMAAEIKKRMGPGATAGGAEKSN 194 (196)
T ss_dssp CTTHHHHHHHHHHHHHHHC-------------
T ss_pred CCCHHHHHHHHHHHHHHHhccccccCCCccCC
Confidence 77777654443 11111122456777776
|
| >3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A* | Back alignment and structure |
|---|
Probab=97.10 E-value=0.00028 Score=65.73 Aligned_cols=23 Identities=35% Similarity=0.524 Sum_probs=20.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHcCC
Q 020346 160 QTTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 160 ~~v~lvG~sG~GKSTLln~L~g~ 182 (327)
..++|+|.+|||||||+|.+.+.
T Consensus 4 ~KI~lvG~~~vGKSSLi~~l~~~ 26 (307)
T 3r7w_A 4 SKLLLMGRSGSGKSSMRSIIFSN 26 (307)
T ss_dssp EEEEEECCTTSSHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 47899999999999999999883
|
| >1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=97.10 E-value=0.00055 Score=59.43 Aligned_cols=23 Identities=30% Similarity=0.531 Sum_probs=21.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHcCC
Q 020346 160 QTTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 160 ~~v~lvG~sG~GKSTLln~L~g~ 182 (327)
-.++|+|++|||||||+|.|.+.
T Consensus 29 ~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 29 CKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 47999999999999999999983
|
| >2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=97.10 E-value=0.00054 Score=58.12 Aligned_cols=23 Identities=30% Similarity=0.523 Sum_probs=20.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHcCC
Q 020346 160 QTTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 160 ~~v~lvG~sG~GKSTLln~L~g~ 182 (327)
-.++|+|++|||||||+|.|.+.
T Consensus 19 ~ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 19 LKCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 37899999999999999999973
|
| >1d7q_A Translation initiation factor 1A; OB-fold, beta-barrel, RNA-binding protein, gene regulation; NMR {Homo sapiens} SCOP: b.40.4.5 | Back alignment and structure |
|---|
Probab=97.08 E-value=0.001 Score=55.37 Aligned_cols=65 Identities=22% Similarity=0.255 Sum_probs=52.3
Q ss_pred CeeEEEecCCCCceeccCCCCcEEEEEEcccccccCCCcccCcEEEEceecccCCceEEeeecccc
Q 020346 1 MRVIVQQSEPSRTSDCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRS 66 (327)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vGD~V~~~~~~~~~~~~~i~~i~~R~ 66 (327)
|-|.|++.-++..+-....+|..+.|.++|++++ ...+..||+|.+++.+.+...|.|...+.+.
T Consensus 33 ~~g~V~e~lgn~~f~V~l~nG~~~La~I~GKmRk-~IwI~~GD~VlVe~~~yd~~KG~Ii~r~~~d 97 (143)
T 1d7q_A 33 EYAQVIKMLGNGRLEAMCFDGVKRLCHIRGKLRK-KVWINTSDIILVGLRDYQDNKADVILKYNAD 97 (143)
T ss_dssp EEEEEEEECSSSEEEEEETTTEEEEEECCSGGGG-SCCCCTTCEEEEECSSSSSSCCEEEEEECTT
T ss_pred EEEEEEEEcCCCEEEEEeCCCCEEEEEeccccee-eEEecCCCEEEEeeccCCCCeEEEEEEeCHH
Confidence 4688999997666444446899999999999997 8899999999999877666678777776543
|
| >2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.07 E-value=0.00057 Score=58.89 Aligned_cols=23 Identities=30% Similarity=0.460 Sum_probs=20.7
Q ss_pred CEEEEEcCCCCCHHHHHHHHcCC
Q 020346 160 QTTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 160 ~~v~lvG~sG~GKSTLln~L~g~ 182 (327)
-.++|+|++|||||||+|.|.+.
T Consensus 10 ~ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 10 IKCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999999873
|
| >1jt8_A EIF-1A, probable translation initiation factor 1A; beta barrel, translation factor; NMR {Methanocaldococcus jannaschii} SCOP: b.40.4.5 | Back alignment and structure |
|---|
Probab=97.07 E-value=0.00035 Score=54.99 Aligned_cols=65 Identities=20% Similarity=0.160 Sum_probs=51.8
Q ss_pred CeeEEEecCCCCceeccCCCCcEEEEEEcccccccCCCcccCcEEEEceeccc-CCceEEeeecccc
Q 020346 1 MRVIVQQSEPSRTSDCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWV-DRRGMIENVFQRS 66 (327)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vGD~V~~~~~~~~-~~~~~i~~i~~R~ 66 (327)
|-|.|++.-++..+-....+|..+.|.++|++++ ...+..||.|.+++.+.+ ..+|.|...+.+.
T Consensus 22 ~~g~V~~~lgn~~~~V~l~nG~~~la~i~GKmRk-~IwI~~GD~VlVe~~~yd~~~Kg~Iv~r~~~d 87 (102)
T 1jt8_A 22 ILGIIEQMLGASRVRVRCLDGKTRLGRIPGRLKN-RIWVREGDVVIVKPWEVQGDQKCDIIWRYTKT 87 (102)
T ss_dssp EEEEEECSSCSSEEEEEEETTEEEEEECCHHHHH-HHCCCSCEEEEECCBCCTTSEEEEEEEESSCS
T ss_pred EEEEEEEEcCCCEEEEEECCCCEEEEEEccccee-eEEecCCCEEEEEeccCCCCceEEEEEEeCHH
Confidence 4588999997666444446899999999999987 788999999999988766 5578787776543
|
| >2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=97.03 E-value=0.00097 Score=55.38 Aligned_cols=87 Identities=20% Similarity=0.239 Sum_probs=55.6
Q ss_pred ccccccccccEEEEEeecCCCCCChHHHHHHHHHHHh---cCCCEEEEeecCCCCcHHH--HHHHHhhhhhcCCceeecc
Q 020346 69 ILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES---TGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLFCS 143 (327)
Q Consensus 69 l~r~~~anvD~lliv~~~~~p~~~~~~l~r~L~~a~~---~~~~~~ivlnK~Dl~~~~~--~~~~~~~~~~~~~~~~~~s 143 (327)
+....+.++|.+++|+++..|. +...+..++..... .+.|+++|+||+|+.++.. ..........++++.+.+|
T Consensus 76 ~~~~~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 154 (180)
T 2g6b_A 76 VTHAYYRDAHALLLLYDVTNKA-SFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETS 154 (180)
T ss_dssp ---CCGGGCSEEEEEEETTCHH-HHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECC
T ss_pred HHHHHccCCCEEEEEEECCCHH-HHHHHHHHHHHHHHhCCCCCcEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEe
Confidence 3445678999999999987642 33345555544443 5789999999999975321 1112222334567888899
Q ss_pred CcchhhHHHHHhh
Q 020346 144 VESKLGLDSLLQR 156 (327)
Q Consensus 144 ~~~~~~l~~l~~~ 156 (327)
+.+..+++.+-..
T Consensus 155 a~~~~gi~~l~~~ 167 (180)
T 2g6b_A 155 AKTGLNVDLAFTA 167 (180)
T ss_dssp TTTCTTHHHHHHH
T ss_pred CCCCCCHHHHHHH
Confidence 8887777766443
|
| >2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=97.03 E-value=0.00023 Score=60.69 Aligned_cols=24 Identities=21% Similarity=0.418 Sum_probs=22.8
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcC
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g 181 (327)
+|..++|+|++||||||+.+.|..
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 688999999999999999999987
|
| >1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=97.02 E-value=0.00025 Score=69.06 Aligned_cols=24 Identities=38% Similarity=0.713 Sum_probs=22.7
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcC
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g 181 (327)
+|++++|+||||+|||||+++|.+
T Consensus 25 ~~~~~~i~G~nG~GKstll~ai~~ 48 (430)
T 1w1w_A 25 ESNFTSIIGPNGSGKSNMMDAISF 48 (430)
T ss_dssp TCSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 479999999999999999999987
|
| >2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=97.02 E-value=0.00024 Score=61.27 Aligned_cols=21 Identities=29% Similarity=0.487 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHcC
Q 020346 161 TTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g 181 (327)
+++|+|+|||||||+.+.|.+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999987
|
| >1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=97.01 E-value=0.0028 Score=53.31 Aligned_cols=85 Identities=11% Similarity=0.106 Sum_probs=57.1
Q ss_pred ccccccccEEEEEeecCCCCCChHHHHHHHHHHHh----cCCCEEEEeecCCCCcH---HHHHHHHhh--hhhcCCceee
Q 020346 71 DPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES----TGIPLTLALNKVELVDE---EVLNTWKSR--LHTWGYEPLF 141 (327)
Q Consensus 71 r~~~anvD~lliv~~~~~p~~~~~~l~r~L~~a~~----~~~~~~ivlnK~Dl~~~---~~~~~~~~~--~~~~~~~~~~ 141 (327)
+..+.++|.+++|+++..+. +...+..++..... .+.|+++|+||+|+.+. ++....... +...+++.+.
T Consensus 78 ~~~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~ 156 (187)
T 1zj6_A 78 NTYYTNTEFVIVVVDSTDRE-RISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQA 156 (187)
T ss_dssp HHHHTTCCEEEEEEETTCTT-THHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEE
T ss_pred HHHhcCCCEEEEEEeCCCHH-HHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCCCCHHHHHHHhChhhhcCCCcEEEE
Confidence 34568999999999998753 45556666655543 57899999999999753 222222211 2345667788
Q ss_pred ccCcchhhHHHHHhh
Q 020346 142 CSVESKLGLDSLLQR 156 (327)
Q Consensus 142 ~s~~~~~~l~~l~~~ 156 (327)
+|+.++.+++++-..
T Consensus 157 ~Sa~~g~gi~~l~~~ 171 (187)
T 1zj6_A 157 CCALTGEGLCQGLEW 171 (187)
T ss_dssp CBTTTTBTHHHHHHH
T ss_pred ccCCCCcCHHHHHHH
Confidence 888887777766544
|
| >4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A | Back alignment and structure |
|---|
Probab=97.00 E-value=0.00029 Score=62.99 Aligned_cols=32 Identities=25% Similarity=0.371 Sum_probs=23.4
Q ss_pred HHHHHhhc----CCCEEEEEcCCCCCHHHHHHHHcC
Q 020346 150 LDSLLQRL----RDQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 150 l~~l~~~l----~g~~v~lvG~sG~GKSTLln~L~g 181 (327)
+.+.++.+ +|..++|.|++||||||+++.|..
T Consensus 13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~ 48 (229)
T 4eaq_A 13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYH 48 (229)
T ss_dssp -------CCCCCCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred ccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHH
Confidence 44555554 689999999999999999999998
|
| >3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* | Back alignment and structure |
|---|
Probab=96.99 E-value=0.00075 Score=58.81 Aligned_cols=24 Identities=25% Similarity=0.451 Sum_probs=21.6
Q ss_pred CCEEEEEcCCCCCHHHHHHHHcCC
Q 020346 159 DQTTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 159 g~~v~lvG~sG~GKSTLln~L~g~ 182 (327)
.-.++|+|.+|||||||+|.|.+.
T Consensus 27 ~~ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 27 RCKLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 457999999999999999999873
|
| >2dgy_A MGC11102 protein; EIF-1A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.99 E-value=0.0017 Score=51.91 Aligned_cols=65 Identities=17% Similarity=0.197 Sum_probs=51.1
Q ss_pred CeeEEEecCCCCceeccCCCCcEEEEEEcccccccCCCcccCcEEEEceeccc-CCceEEeeecccc
Q 020346 1 MRVIVQQSEPSRTSDCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWV-DRRGMIENVFQRS 66 (327)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vGD~V~~~~~~~~-~~~~~i~~i~~R~ 66 (327)
|-|.|++.-++..+-....+|..+.|.++|++++ ...+..||.|.+++.+.+ ...|.|...+...
T Consensus 17 ~~g~V~~~lgn~~f~V~l~nG~~~la~i~GK~Rk-~IwI~~GD~VlVe~~~yd~~~kg~Iv~r~~~~ 82 (111)
T 2dgy_A 17 QIVRVLRTPGNNLHEVETAQGQRFLVSMPSKYRK-NIWIKRGDFLIVDPIEEGEKVKAEISFVLCKD 82 (111)
T ss_dssp EEEEEEECCSSSEEEEECTTSCEEEEECCTTCCS-CCCCCSSCEEEEEECSSCSSCCEEEEEECCHH
T ss_pred EEEEEEEeCCCCEEEEEeCCCCEEEEEechhhcc-cEEEcCCCEEEEEecccCCcceEEEEEEeCHH
Confidence 4588999997666555556899999999999996 788999999999987654 4467777766543
|
| >1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* | Back alignment and structure |
|---|
Probab=96.99 E-value=0.0052 Score=50.29 Aligned_cols=87 Identities=14% Similarity=0.056 Sum_probs=56.8
Q ss_pred ccccccccccEEEEEeecCCCCCChHHHHHHHHHHHh----cCCCEEEEeecCCCCcHH---HHHHHH--hhhhhcCCce
Q 020346 69 ILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES----TGIPLTLALNKVELVDEE---VLNTWK--SRLHTWGYEP 139 (327)
Q Consensus 69 l~r~~~anvD~lliv~~~~~p~~~~~~l~r~L~~a~~----~~~~~~ivlnK~Dl~~~~---~~~~~~--~~~~~~~~~~ 139 (327)
+.+..+.++|.+++|+++..|. +...+..++..... .+.|+++|+||+|+.+.. +..... ..+...+++.
T Consensus 67 ~~~~~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (171)
T 1upt_A 67 YWRCYYSNTDAVIYVVDSCDRD-RIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQI 145 (171)
T ss_dssp GGGGGCTTCSEEEEEEETTCCT-THHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCEEE
T ss_pred HHHHHhccCCEEEEEEECCCHH-HHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCCHHHHHHHhCchhccCCceEE
Confidence 3444578999999999998753 44455555544432 478999999999997642 222111 1223345677
Q ss_pred eeccCcchhhHHHHHhh
Q 020346 140 LFCSVESKLGLDSLLQR 156 (327)
Q Consensus 140 ~~~s~~~~~~l~~l~~~ 156 (327)
+.+|+.+..+++++-..
T Consensus 146 ~~~Sa~~~~gi~~l~~~ 162 (171)
T 1upt_A 146 FKTSATKGTGLDEAMEW 162 (171)
T ss_dssp EECCTTTCTTHHHHHHH
T ss_pred EECcCCCCcCHHHHHHH
Confidence 88888887777766443
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A | Back alignment and structure |
|---|
Probab=96.96 E-value=0.00031 Score=64.13 Aligned_cols=24 Identities=33% Similarity=0.486 Sum_probs=23.3
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcC
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g 181 (327)
+|++++|+|+||+|||||++.|++
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH
Confidence 899999999999999999999997
|
| >2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* | Back alignment and structure |
|---|
Probab=96.96 E-value=0.0013 Score=55.49 Aligned_cols=87 Identities=17% Similarity=0.269 Sum_probs=57.6
Q ss_pred ccccccccccEEEEEeecCCCCCChHHHHHHHHHHHh---cCCCEEEEeecCCCCcHHH--HHHHHhhhhhcCCceeecc
Q 020346 69 ILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES---TGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLFCS 143 (327)
Q Consensus 69 l~r~~~anvD~lliv~~~~~p~~~~~~l~r~L~~a~~---~~~~~~ivlnK~Dl~~~~~--~~~~~~~~~~~~~~~~~~s 143 (327)
+....+.++|.+++|+++..+. +...+..++..... .+.|+++|+||+|+.+... ..........++++.+.+|
T Consensus 87 ~~~~~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 165 (189)
T 2gf9_A 87 ITTAYYRGAMGFLLMYDIANQE-SFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEAS 165 (189)
T ss_dssp SGGGGGTTCSEEEEEEETTCHH-HHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECB
T ss_pred hHHHhccCCCEEEEEEECCCHH-HHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEE
Confidence 3445678999999999987642 33345555544443 3789999999999976421 1122233344678889999
Q ss_pred CcchhhHHHHHhh
Q 020346 144 VESKLGLDSLLQR 156 (327)
Q Consensus 144 ~~~~~~l~~l~~~ 156 (327)
+.+..+++++-..
T Consensus 166 a~~g~gi~~l~~~ 178 (189)
T 2gf9_A 166 AKENINVKQVFER 178 (189)
T ss_dssp TTTTBSHHHHHHH
T ss_pred CCCCCCHHHHHHH
Confidence 9888777766544
|
| >3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A* | Back alignment and structure |
|---|
Probab=96.94 E-value=0.0004 Score=57.70 Aligned_cols=21 Identities=24% Similarity=0.330 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHcC
Q 020346 161 TTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g 181 (327)
.++|+|++||||||+.+.|..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999975
|
| >1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A | Back alignment and structure |
|---|
Probab=96.92 E-value=0.00036 Score=60.70 Aligned_cols=21 Identities=52% Similarity=0.817 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHcC
Q 020346 161 TTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g 181 (327)
-++|+||||||||||++.|+.
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~ 23 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 378999999999999999975
|
| >3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A* | Back alignment and structure |
|---|
Probab=96.91 E-value=0.00046 Score=67.97 Aligned_cols=22 Identities=23% Similarity=0.285 Sum_probs=20.5
Q ss_pred CEEEEEcCCCCCHHHHHHHHcC
Q 020346 160 QTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 160 ~~v~lvG~sG~GKSTLln~L~g 181 (327)
.+++|+|+.++|||||||.|+|
T Consensus 68 ~vVsV~G~~~~GKStLLN~llg 89 (447)
T 3q5d_A 68 VAVSVAGAFRKGKSFLMDFMLR 89 (447)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCcHHHHHHHHhh
Confidence 4689999999999999999997
|
| >1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* | Back alignment and structure |
|---|
Probab=96.91 E-value=0.00046 Score=58.01 Aligned_cols=23 Identities=30% Similarity=0.559 Sum_probs=21.4
Q ss_pred CCEEEEEcCCCCCHHHHHHHHcC
Q 020346 159 DQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 159 g~~v~lvG~sG~GKSTLln~L~g 181 (327)
+..+.|+|+|||||||+.+.|..
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999999987
|
| >1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F | Back alignment and structure |
|---|
Probab=96.91 E-value=0.00018 Score=67.14 Aligned_cols=45 Identities=16% Similarity=0.132 Sum_probs=36.5
Q ss_pred HhhcCCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeec
Q 020346 154 LQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (327)
Q Consensus 154 ~~~l~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~ 210 (327)
++..++.+++++|++|+||||+++.|++ ++.+..|++.+-+.++.
T Consensus 93 ~~~~~~~vi~i~G~~G~GKTT~~~~la~------------~~~~~g~~v~l~~~D~~ 137 (297)
T 1j8m_F 93 IPDKIPYVIMLVGVQGTGKTTTAGKLAY------------FYKKKGFKVGLVGADVY 137 (297)
T ss_dssp SCSSSSEEEEEECSSCSSTTHHHHHHHH------------HHHHTTCCEEEEECCCS
T ss_pred ccCCCCeEEEEECCCCCCHHHHHHHHHH------------HHHHCCCeEEEEecCCC
Confidence 3334578999999999999999999998 77777788887766643
|
| >3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.90 E-value=0.00037 Score=59.02 Aligned_cols=24 Identities=29% Similarity=0.581 Sum_probs=21.6
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcC
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g 181 (327)
+|..++|+|++||||||+.+.|..
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999999974
|
| >3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana} | Back alignment and structure |
|---|
Probab=96.90 E-value=0.00026 Score=69.34 Aligned_cols=61 Identities=36% Similarity=0.418 Sum_probs=0.0
Q ss_pred EEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcceeeEEEEEEEccCCCeEEeC
Q 020346 161 TTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADT 240 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~tt~~i~~v~q~~~~~i~Dt 240 (327)
.++|+|++|+|||||+|.|.+ ......+...+.........-.+.......++||
T Consensus 36 kI~IvG~~~vGKSTLin~L~~-------------------------~~~~~~~~~~gtT~d~~~~~~~~~~~~~l~liDT 90 (423)
T 3qq5_A 36 YIVVAGRRNVGKSSFMNALVG-------------------------QNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDT 90 (423)
T ss_dssp EEEEECSCSTTTTTTTTSSCC--------------------------------------CCCCEEEEEETTTEEEEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHc-------------------------CCCCccCCCCCeeeeeEEEEEEECCCCeEEEEEC
Q ss_pred cccCCc
Q 020346 241 PGFNQP 246 (327)
Q Consensus 241 pg~~~~ 246 (327)
||+..+
T Consensus 91 pG~~d~ 96 (423)
T 3qq5_A 91 PGLDDV 96 (423)
T ss_dssp SSTTCC
T ss_pred cCCCcc
|
| >2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=96.90 E-value=0.0024 Score=54.92 Aligned_cols=91 Identities=14% Similarity=0.227 Sum_probs=54.8
Q ss_pred ccccccccccccccEEEEEeecCCCCCChHHHH-HHHHHHHh--cCCCEEEEeecCCCCcHHHH----------HHHHhh
Q 020346 65 RSTEILDPPVANVDHLLLLFSMDQPKLEPFALT-RFLVEAES--TGIPLTLALNKVELVDEEVL----------NTWKSR 131 (327)
Q Consensus 65 R~~~l~r~~~anvD~lliv~~~~~p~~~~~~l~-r~L~~a~~--~~~~~~ivlnK~Dl~~~~~~----------~~~~~~ 131 (327)
+...+.+..+.++|.+++|+++..|. +...+. .++..... .+.|+++|.||+|+.++... ......
T Consensus 69 ~~~~~~~~~~~~~d~~ilv~d~~~~~-s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~ 147 (212)
T 2j0v_A 69 DYSRLRPLSYRGADIFVLAFSLISKA-SYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEEL 147 (212)
T ss_dssp CCCC--CGGGTTCSEEEEEEETTCHH-HHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHH
T ss_pred HHHHHHHhhccCCCEEEEEEECCCHH-HHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHH
Confidence 33344445678999999999987643 222332 44444433 37899999999999654321 111222
Q ss_pred hhhcCC-ceeeccCcchhhHHHHHhh
Q 020346 132 LHTWGY-EPLFCSVESKLGLDSLLQR 156 (327)
Q Consensus 132 ~~~~~~-~~~~~s~~~~~~l~~l~~~ 156 (327)
...+++ +.+.+|+.+..+++++-..
T Consensus 148 ~~~~~~~~~~~~Sa~~g~gi~~l~~~ 173 (212)
T 2j0v_A 148 RKQIGAAAYIECSSKTQQNVKAVFDT 173 (212)
T ss_dssp HHHHTCSEEEECCTTTCTTHHHHHHH
T ss_pred HHHcCCceEEEccCCCCCCHHHHHHH
Confidence 334554 6777888777776665443
|
| >3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.90 E-value=0.00068 Score=58.15 Aligned_cols=85 Identities=9% Similarity=0.124 Sum_probs=53.0
Q ss_pred cccccccccEEEEEeecCCCCCChHHHHHHHHHHHh---cCCCEEEEeecCCCCcHHH-HHHHHhhhhhcCCceeeccCc
Q 020346 70 LDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES---TGIPLTLALNKVELVDEEV-LNTWKSRLHTWGYEPLFCSVE 145 (327)
Q Consensus 70 ~r~~~anvD~lliv~~~~~p~~~~~~l~r~L~~a~~---~~~~~~ivlnK~Dl~~~~~-~~~~~~~~~~~~~~~~~~s~~ 145 (327)
....+.++|.+++|+++..+. +...+..++..... .+.|+++|+||+|+.+... ..........++++.+.+|+.
T Consensus 86 ~~~~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 164 (213)
T 3cph_A 86 TTAYYRGAMGIILVYDVTDER-TFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKELGIPFIESSAK 164 (213)
T ss_dssp CHHHHTTCSEEEEEEETTCHH-HHHTHHHHHHHHHHHTTTCSEEEEEEECTTCSSCCSCHHHHHHHHHHHTCCEEECBTT
T ss_pred HHHHhccCCEEEEEEECCCHH-HHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcccccCHHHHHHHHHHcCCEEEEEeCC
Confidence 334578999999999987642 23344555544432 3678999999999953211 111122233457788889988
Q ss_pred chhhHHHHHh
Q 020346 146 SKLGLDSLLQ 155 (327)
Q Consensus 146 ~~~~l~~l~~ 155 (327)
+..+++.+..
T Consensus 165 ~~~gi~~l~~ 174 (213)
T 3cph_A 165 NDDNVNEIFF 174 (213)
T ss_dssp TTBSSHHHHH
T ss_pred CCCCHHHHHH
Confidence 7766655443
|
| >3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.89 E-value=0.0037 Score=56.21 Aligned_cols=81 Identities=16% Similarity=0.119 Sum_probs=54.8
Q ss_pred cccEEEEEeecCCC-CCChHHHHHHHHHHH----hcCCCEEEEeecCCCCcHHHHHHHHhhhhh-cCCceeeccCcchhh
Q 020346 76 NVDHLLLLFSMDQP-KLEPFALTRFLVEAE----STGIPLTLALNKVELVDEEVLNTWKSRLHT-WGYEPLFCSVESKLG 149 (327)
Q Consensus 76 nvD~lliv~~~~~p-~~~~~~l~r~L~~a~----~~~~~~~ivlnK~Dl~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~ 149 (327)
++|.+++|+++..+ ..+...+.+++.... ..+.|+++|.||+|+.+............. .++..+.+|+.+..+
T Consensus 162 ~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~e~SAk~g~g 241 (255)
T 3c5h_A 162 LVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYIRDAHTFALSKKNLQVVETSARSNVN 241 (255)
T ss_dssp ECCEEEEEEECBC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHHHHHHHHHHTSSSCCEEECBTTTTBS
T ss_pred cCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHHHHHHHHHHhcCCCeEEEEECCCCCC
Confidence 79999999999765 245556666655443 247899999999999776544332222223 367788899988877
Q ss_pred HHHHHhh
Q 020346 150 LDSLLQR 156 (327)
Q Consensus 150 l~~l~~~ 156 (327)
++++-..
T Consensus 242 v~elf~~ 248 (255)
T 3c5h_A 242 VDLAFST 248 (255)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7776443
|
| >2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} | Back alignment and structure |
|---|
Probab=96.89 E-value=0.0048 Score=51.86 Aligned_cols=87 Identities=11% Similarity=0.021 Sum_probs=56.0
Q ss_pred ccccccccccEEEEEeecCCCCCChHHHHHHHHHHHh----cCCCEEEEeecCCCCcHH---HHHHHHh--hhhhcCCce
Q 020346 69 ILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES----TGIPLTLALNKVELVDEE---VLNTWKS--RLHTWGYEP 139 (327)
Q Consensus 69 l~r~~~anvD~lliv~~~~~p~~~~~~l~r~L~~a~~----~~~~~~ivlnK~Dl~~~~---~~~~~~~--~~~~~~~~~ 139 (327)
+.+..+.++|.+++|+++..|. +...+..++..... .+.|+++|+||+|+.+.. +...... .....+++.
T Consensus 82 ~~~~~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (189)
T 2x77_A 82 YWRCYFSDTDAVIYVVDSTDRD-RMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAASEAEIAEQLGVSSIMNRTWTI 160 (189)
T ss_dssp CCSSSSTTCCEEEEEEETTCCT-THHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEE
T ss_pred HHHHHhhcCCEEEEEEeCCCHH-HHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCCHHHHHHHhChhhccCCceEE
Confidence 3344578999999999998753 44455555544433 378999999999997642 2222111 122345567
Q ss_pred eeccCcchhhHHHHHhh
Q 020346 140 LFCSVESKLGLDSLLQR 156 (327)
Q Consensus 140 ~~~s~~~~~~l~~l~~~ 156 (327)
+.+|+.+..+++++-..
T Consensus 161 ~~~Sa~~~~gi~~l~~~ 177 (189)
T 2x77_A 161 VKSSSKTGDGLVEGMDW 177 (189)
T ss_dssp EECCTTTCTTHHHHHHH
T ss_pred EEccCCCccCHHHHHHH
Confidence 88888887777766443
|
| >3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.89 E-value=0.00044 Score=59.42 Aligned_cols=21 Identities=43% Similarity=0.719 Sum_probs=0.0
Q ss_pred EEEEEcCCCCCHHHHHHHHcC
Q 020346 161 TTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g 181 (327)
.++|+|.+|||||||+|.|.+
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~ 45 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGG 45 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHHh
|
| >1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A | Back alignment and structure |
|---|
Probab=96.89 E-value=0.0005 Score=58.12 Aligned_cols=24 Identities=21% Similarity=0.432 Sum_probs=21.3
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcC
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g 181 (327)
+|..++|.|++||||||+.+.|..
T Consensus 2 ~~~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp -CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 367899999999999999999976
|
| >1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A* | Back alignment and structure |
|---|
Probab=96.88 E-value=0.00046 Score=57.52 Aligned_cols=24 Identities=38% Similarity=0.754 Sum_probs=20.8
Q ss_pred cCCCEEEEEcCCCCCHHHHHHHHc
Q 020346 157 LRDQTTVIVGPSGVGKSSLINALR 180 (327)
Q Consensus 157 l~g~~v~lvG~sG~GKSTLln~L~ 180 (327)
+.....+|+||||+|||||+.+|.
T Consensus 21 f~~g~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 21 FKEGINLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHH
T ss_pred cCCCeEEEECCCCCCHHHHHHHHH
Confidence 345588999999999999999976
|
| >1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A | Back alignment and structure |
|---|
Probab=96.87 E-value=0.0004 Score=59.74 Aligned_cols=22 Identities=27% Similarity=0.376 Sum_probs=20.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHcC
Q 020346 160 QTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 160 ~~v~lvG~sG~GKSTLln~L~g 181 (327)
..++|+|+||||||||++.|.+
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~ 28 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIP 28 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHH
Confidence 5789999999999999999998
|
| >1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.87 E-value=0.00053 Score=58.58 Aligned_cols=29 Identities=21% Similarity=0.353 Sum_probs=23.3
Q ss_pred HHhhc-CCCEEEEEcCCCCCHHHHHHHHcC
Q 020346 153 LLQRL-RDQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 153 l~~~l-~g~~v~lvG~sG~GKSTLln~L~g 181 (327)
+++.. ++..++|+|++||||||+.+.|..
T Consensus 3 ~~~~~~~~~~I~l~G~~GsGKSTv~~~La~ 32 (184)
T 1y63_A 3 GSMEQPKGINILITGTPGTGKTSMAEMIAA 32 (184)
T ss_dssp ---CCCSSCEEEEECSTTSSHHHHHHHHHH
T ss_pred cCcCCCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 34443 678999999999999999999976
|
| >3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=96.86 E-value=0.00048 Score=59.47 Aligned_cols=23 Identities=39% Similarity=0.538 Sum_probs=21.1
Q ss_pred CCEEEEEcCCCCCHHHHHHHHcC
Q 020346 159 DQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 159 g~~v~lvG~sG~GKSTLln~L~g 181 (327)
...++|+|+|||||||+.+.|.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999986
|
| >2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.86 E-value=0.004 Score=52.55 Aligned_cols=91 Identities=16% Similarity=0.237 Sum_probs=55.8
Q ss_pred ccccccccccccccEEEEEeecCCCCCChHHHH-HHHHHHHhc--CCCEEEEeecCCCCcHHHH--------------HH
Q 020346 65 RSTEILDPPVANVDHLLLLFSMDQPKLEPFALT-RFLVEAEST--GIPLTLALNKVELVDEEVL--------------NT 127 (327)
Q Consensus 65 R~~~l~r~~~anvD~lliv~~~~~p~~~~~~l~-r~L~~a~~~--~~~~~ivlnK~Dl~~~~~~--------------~~ 127 (327)
+...+.+..+.++|.+++|+++..|. +...+. .++...... +.|+++|.||+|+.+.... ..
T Consensus 78 ~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~ 156 (194)
T 2atx_A 78 DYDRLRPLSYPMTDVFLICFSVVNPA-SFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQ 156 (194)
T ss_dssp SSTTTGGGGCTTCSEEEEEEETTCHH-HHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHH
T ss_pred chhHHHHHhcCCCCEEEEEEECCCHH-HHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcccccchhhcccccCcccCHHH
Confidence 33344455678999999999987642 222333 444444433 7899999999999764311 11
Q ss_pred HHhhhhhcCC-ceeeccCcchhhHHHHHhh
Q 020346 128 WKSRLHTWGY-EPLFCSVESKLGLDSLLQR 156 (327)
Q Consensus 128 ~~~~~~~~~~-~~~~~s~~~~~~l~~l~~~ 156 (327)
.......+++ ..+.+|+.+..+++.+-..
T Consensus 157 ~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~ 186 (194)
T 2atx_A 157 GQKLAKEIGACCYVECSALTQKGLKTVFDE 186 (194)
T ss_dssp HHHHHHHHTCSCEEECCTTTCTTHHHHHHH
T ss_pred HHHHHHHcCCcEEEEeeCCCCCCHHHHHHH
Confidence 1122233455 6777888777777765443
|
| >2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.85 E-value=0.0026 Score=53.69 Aligned_cols=88 Identities=10% Similarity=0.083 Sum_probs=56.0
Q ss_pred cccccccccccEEEEEeecCCCCCChHHHHHHHHHHHh------cCCCEEEEeecCCCCcHH---HHHHHH--hhhhhcC
Q 020346 68 EILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES------TGIPLTLALNKVELVDEE---VLNTWK--SRLHTWG 136 (327)
Q Consensus 68 ~l~r~~~anvD~lliv~~~~~p~~~~~~l~r~L~~a~~------~~~~~~ivlnK~Dl~~~~---~~~~~~--~~~~~~~ 136 (327)
.+.+..+.++|.+++|+++..+. +...+..++..... .+.|+++|+||+|+.+.. +..... ..+...+
T Consensus 82 ~~~~~~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 160 (190)
T 2h57_A 82 NLWEHYYKEGQAIIFVIDSSDRL-RMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQLLCLENIKDKP 160 (190)
T ss_dssp GGGGGGGGGCSEEEEEEETTCHH-HHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSC
T ss_pred HHHHHHHhcCCEEEEEEECCCHH-HHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccCCCHHHHHHHhChhhccCCc
Confidence 33445678999999999987642 23344444444332 478999999999997542 222222 1122345
Q ss_pred CceeeccCcchhhHHHHHhh
Q 020346 137 YEPLFCSVESKLGLDSLLQR 156 (327)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~ 156 (327)
+..+.+|+.+..+++++-..
T Consensus 161 ~~~~~~Sa~~~~gi~~l~~~ 180 (190)
T 2h57_A 161 WHICASDAIKGEGLQEGVDW 180 (190)
T ss_dssp EEEEECBTTTTBTHHHHHHH
T ss_pred eEEEEccCCCCcCHHHHHHH
Confidence 67888998888777776544
|
| >2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* | Back alignment and structure |
|---|
Probab=96.85 E-value=0.0004 Score=59.52 Aligned_cols=21 Identities=43% Similarity=0.744 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHcC
Q 020346 161 TTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g 181 (327)
.++|+|.+|||||||+|.+.+
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999999986
|
| >1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* | Back alignment and structure |
|---|
Probab=96.85 E-value=0.0023 Score=53.67 Aligned_cols=86 Identities=16% Similarity=0.095 Sum_probs=55.7
Q ss_pred cccccccccEEEEEeecCCCCCChHHHHHHHHHHHh----cCCCEEEEeecCCCCcHHHHHHHHhhh-----hhcCCcee
Q 020346 70 LDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES----TGIPLTLALNKVELVDEEVLNTWKSRL-----HTWGYEPL 140 (327)
Q Consensus 70 ~r~~~anvD~lliv~~~~~p~~~~~~l~r~L~~a~~----~~~~~~ivlnK~Dl~~~~~~~~~~~~~-----~~~~~~~~ 140 (327)
.+..+.++|.+++|+++..|. +...+..++..... .+.|+++|+||+|+.+..........+ ...+++.+
T Consensus 79 ~~~~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (186)
T 1ksh_A 79 WRNYFESTDGLIWVVDSADRQ-RMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQ 157 (186)
T ss_dssp GGGGCTTCSEEEEEEETTCGG-GHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEE
T ss_pred HHHHhcCCCEEEEEEECcCHH-HHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCCCHHHHHHHhChhhccCCceEEE
Confidence 344578999999999987653 34445555544432 478999999999997643222222222 23456778
Q ss_pred eccCcchhhHHHHHhh
Q 020346 141 FCSVESKLGLDSLLQR 156 (327)
Q Consensus 141 ~~s~~~~~~l~~l~~~ 156 (327)
.+|+.+..+++++-..
T Consensus 158 ~~Sa~~~~gi~~l~~~ 173 (186)
T 1ksh_A 158 GCSAVTGEDLLPGIDW 173 (186)
T ss_dssp ECCTTTCTTHHHHHHH
T ss_pred EeeCCCCCCHHHHHHH
Confidence 8888887777766544
|
| >2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=96.85 E-value=0.00015 Score=69.50 Aligned_cols=41 Identities=20% Similarity=0.282 Sum_probs=32.2
Q ss_pred hcCccccccccccccccc---------cCCceEEcccH------HHHHHHHHHHHHH
Q 020346 266 MLKANEPAKCSFNNCLHL---------GEPGCVVKGDW------ERYQYYFQLLDEI 307 (327)
Q Consensus 266 ~LSgGq~q~~~~~~~~h~---------~ep~~~v~~~~------~r~~~~~~ll~e~ 307 (327)
.||+||+|++.++.++ + ++|.++++||| .+.+.+.+++.++
T Consensus 265 ~lS~Gqqq~l~lA~~L-a~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~ 320 (359)
T 2o5v_A 265 YASRGEGRTVALALRR-AELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASV 320 (359)
T ss_dssp HCCHHHHHHHHHHHHH-HHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHS
T ss_pred hCCHHHHHHHHHHHHH-HHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhc
Confidence 4899999999999887 6 89999999855 4666666666554
|
| >2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* | Back alignment and structure |
|---|
Probab=96.85 E-value=0.0015 Score=54.62 Aligned_cols=87 Identities=10% Similarity=0.156 Sum_probs=52.2
Q ss_pred ccccccccccEEEEEeecCCCCCChHHHHHHHHHHHh---cCCCEEEEeecCCCCcHHH--HHHHHhhhhhcCCceeecc
Q 020346 69 ILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES---TGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLFCS 143 (327)
Q Consensus 69 l~r~~~anvD~lliv~~~~~p~~~~~~l~r~L~~a~~---~~~~~~ivlnK~Dl~~~~~--~~~~~~~~~~~~~~~~~~s 143 (327)
+.+..+.++|.+++|+++..|. +...+..++..... .+.|+++|.||+|+.+... ..........++++.+.+|
T Consensus 73 ~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~S 151 (183)
T 2fu5_C 73 ITTAYYRGAMGIMLVYDITNEK-SFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETS 151 (183)
T ss_dssp -CCTTTTTCSEEEEEEETTCHH-HHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECC
T ss_pred hHHHHHhcCCEEEEEEECcCHH-HHHHHHHHHHHHHHhcCCCCCEEEEEECccCCccCcCCHHHHHHHHHHcCCeEEEEe
Confidence 3445578999999999987653 34455556554443 3679999999999975321 1112223344577888899
Q ss_pred CcchhhHHHHHhh
Q 020346 144 VESKLGLDSLLQR 156 (327)
Q Consensus 144 ~~~~~~l~~l~~~ 156 (327)
+.+..+++++-..
T Consensus 152 a~~~~~i~~l~~~ 164 (183)
T 2fu5_C 152 AKANINVENAFFT 164 (183)
T ss_dssp C---CCHHHHHHH
T ss_pred CCCCCCHHHHHHH
Confidence 8877777665443
|
| >2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A* | Back alignment and structure |
|---|
Probab=96.84 E-value=0.00049 Score=62.78 Aligned_cols=25 Identities=24% Similarity=0.353 Sum_probs=22.4
Q ss_pred CCEEEEEcCCCCCHHHHHHHHcCCC
Q 020346 159 DQTTVIVGPSGVGKSSLINALRSSP 183 (327)
Q Consensus 159 g~~v~lvG~sG~GKSTLln~L~g~~ 183 (327)
.-.++|+|.+|||||||+|.|.|..
T Consensus 26 ~~~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 26 LPQIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp CCEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred CCeEEEEeCCCCCHHHHHHHHHCCC
Confidence 3479999999999999999999954
|
| >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=96.84 E-value=0.00042 Score=61.01 Aligned_cols=33 Identities=21% Similarity=0.445 Sum_probs=24.7
Q ss_pred hHHHHH-hhc-CCCEEEEEcCCCCCHHHHHHHHcC
Q 020346 149 GLDSLL-QRL-RDQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 149 ~l~~l~-~~l-~g~~v~lvG~sG~GKSTLln~L~g 181 (327)
.|+.+. --+ +|+.++|+|+||+|||||+..++.
T Consensus 11 ~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 11 GVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp THHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHH
T ss_pred hHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 455552 223 899999999999999999665544
|
| >3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A | Back alignment and structure |
|---|
Probab=96.83 E-value=0.00057 Score=56.45 Aligned_cols=20 Identities=35% Similarity=0.566 Sum_probs=18.6
Q ss_pred CEEEEEcCCCCCHHHHHHHH
Q 020346 160 QTTVIVGPSGVGKSSLINAL 179 (327)
Q Consensus 160 ~~v~lvG~sG~GKSTLln~L 179 (327)
..++|+|++||||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 36899999999999999999
|
| >3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.83 E-value=0.00097 Score=62.70 Aligned_cols=52 Identities=17% Similarity=0.162 Sum_probs=0.0
Q ss_pred EEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcceeeEEEEEEEccCCCeEEeC
Q 020346 161 TTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADT 240 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~tt~~i~~v~q~~~~~i~Dt 240 (327)
.++|+|.+|||||||+|.|.+ +.-+...+.. ......+-.......++||
T Consensus 167 kI~ivG~~~vGKSsLl~~l~~------------------------~~~~~~~pT~------~~~~~~~~~~~~~l~i~Dt 216 (329)
T 3o47_A 167 RILMVGLDAAGKTTILYKLKL------------------------GEIVTTIPTI------GFNVETVEYKNISFTVWDV 216 (329)
T ss_dssp EEEEEESTTSSHHHHHHHTCS------------------------SCCEEEEEET------TEEEEEEEETTEEEEEEEC
T ss_pred eEEEECCCCccHHHHHHHHhC------------------------CCCCCccccc------ceEEEEEecCcEEEEEEEC
Q ss_pred cc
Q 020346 241 PG 242 (327)
Q Consensus 241 pg 242 (327)
||
T Consensus 217 ~G 218 (329)
T 3o47_A 217 GG 218 (329)
T ss_dssp C-
T ss_pred CC
|
| >3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A | Back alignment and structure |
|---|
Probab=96.82 E-value=0.00038 Score=67.48 Aligned_cols=30 Identities=30% Similarity=0.532 Sum_probs=25.9
Q ss_pred HHHhhc-CCCEEEEEcCCCCCHHHHHHHHcC
Q 020346 152 SLLQRL-RDQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 152 ~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g 181 (327)
|+.+.+ +|++++|+|+||+|||||++.|.+
T Consensus 166 D~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar 196 (422)
T 3ice_A 166 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQ 196 (422)
T ss_dssp HHHSCCBTTCEEEEECCSSSSHHHHHHHHHH
T ss_pred eeeeeecCCcEEEEecCCCCChhHHHHHHHH
Confidence 444444 899999999999999999999987
|
| >2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.81 E-value=0.0018 Score=55.03 Aligned_cols=86 Identities=16% Similarity=0.251 Sum_probs=57.8
Q ss_pred ccccccccEEEEEeecCCCCCChHHHHHHHHHHHh---cCCCEEEEeecCCCCcHHH--HHHHHhhhhhcCCceeeccCc
Q 020346 71 DPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES---TGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLFCSVE 145 (327)
Q Consensus 71 r~~~anvD~lliv~~~~~p~~~~~~l~r~L~~a~~---~~~~~~ivlnK~Dl~~~~~--~~~~~~~~~~~~~~~~~~s~~ 145 (327)
...+.++|.+++|+++..+. +...+..++..... .+.|+++|+||+|+.+... .+........++++.+.+|+.
T Consensus 90 ~~~~~~~d~iilV~d~~~~~-s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~ 168 (192)
T 2fg5_A 90 PMYYRGSAAAVIVYDITKQD-SFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAK 168 (192)
T ss_dssp HHHHTTCSEEEEEEETTCTH-HHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTTTCEEEECBTT
T ss_pred HHhhccCCEEEEEEeCCCHH-HHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCC
Confidence 34568999999999987653 34455555554443 3678999999999975321 122233344567788899988
Q ss_pred chhhHHHHHhhc
Q 020346 146 SKLGLDSLLQRL 157 (327)
Q Consensus 146 ~~~~l~~l~~~l 157 (327)
+..+++++...+
T Consensus 169 ~~~gi~~l~~~l 180 (192)
T 2fg5_A 169 NAINIEELFQGI 180 (192)
T ss_dssp TTBSHHHHHHHH
T ss_pred CCcCHHHHHHHH
Confidence 887777765543
|
| >2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* | Back alignment and structure |
|---|
Probab=96.80 E-value=0.002 Score=53.46 Aligned_cols=86 Identities=12% Similarity=0.131 Sum_probs=56.6
Q ss_pred cccccccccEEEEEeecCCCCCChHHHHHHHHHHHhc---CCCEEEEeecCCCCcHHH--HHHHHhhhhhcCCceeeccC
Q 020346 70 LDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAEST---GIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLFCSV 144 (327)
Q Consensus 70 ~r~~~anvD~lliv~~~~~p~~~~~~l~r~L~~a~~~---~~~~~ivlnK~Dl~~~~~--~~~~~~~~~~~~~~~~~~s~ 144 (327)
.+..+.++|.+++|+++..+. +...+..++...... +.|+++|+||+|+.+... ...........+++.+.+|+
T Consensus 78 ~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 156 (181)
T 2efe_B 78 APMYYRGAAAAIIVFDVTNQA-SFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSA 156 (181)
T ss_dssp THHHHTTCSEEEEEEETTCHH-HHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCS
T ss_pred hHHHhccCCEEEEEEECCCHH-HHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccccCCHHHHHHHHHHcCCEEEEEEC
Confidence 334568899999999987642 334455555544432 678999999999965321 12222333446778888998
Q ss_pred cchhhHHHHHhh
Q 020346 145 ESKLGLDSLLQR 156 (327)
Q Consensus 145 ~~~~~l~~l~~~ 156 (327)
.+..+++.+-..
T Consensus 157 ~~g~gi~~l~~~ 168 (181)
T 2efe_B 157 KTATNVKEIFYE 168 (181)
T ss_dssp SSCTTHHHHHHH
T ss_pred CCCCCHHHHHHH
Confidence 887777776544
|
| >1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* | Back alignment and structure |
|---|
Probab=96.78 E-value=0.0018 Score=53.12 Aligned_cols=87 Identities=15% Similarity=0.206 Sum_probs=55.9
Q ss_pred ccccccccccEEEEEeecCCCCCChHHHHHHHHHHH---hcCCCEEEEeecCCCCcHHH--HHHHHhhhhhcCCceeecc
Q 020346 69 ILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE---STGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLFCS 143 (327)
Q Consensus 69 l~r~~~anvD~lliv~~~~~p~~~~~~l~r~L~~a~---~~~~~~~ivlnK~Dl~~~~~--~~~~~~~~~~~~~~~~~~s 143 (327)
+.+....++|.+++|+++..+. +...+..++.... ..+.|+++|+||+|+.++.. ..........++++.+.+|
T Consensus 71 ~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 149 (170)
T 1z08_A 71 LGPIYYRDSNGAILVYDITDED-SFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTS 149 (170)
T ss_dssp --CCSSTTCSEEEEEEETTCHH-HHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEB
T ss_pred hHHHHhccCCEEEEEEECcCHH-HHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEec
Confidence 3344567999999999987642 3344555544333 35788999999999976321 1122233344677888899
Q ss_pred CcchhhHHHHHhh
Q 020346 144 VESKLGLDSLLQR 156 (327)
Q Consensus 144 ~~~~~~l~~l~~~ 156 (327)
+.+..+++++-..
T Consensus 150 a~~~~gi~~l~~~ 162 (170)
T 1z08_A 150 AKQNKGIEELFLD 162 (170)
T ss_dssp TTTTBSHHHHHHH
T ss_pred CCCCCCHHHHHHH
Confidence 8888777776543
|
| >3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* | Back alignment and structure |
|---|
Probab=96.77 E-value=0.00087 Score=56.36 Aligned_cols=86 Identities=16% Similarity=0.183 Sum_probs=56.0
Q ss_pred ccccccccEEEEEeecCCCCC-----ChHHHHHHHHHH--HhcCCCEEEEeecCCCCcHHHHHHHHhhhhhcCC-ceeec
Q 020346 71 DPPVANVDHLLLLFSMDQPKL-----EPFALTRFLVEA--ESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGY-EPLFC 142 (327)
Q Consensus 71 r~~~anvD~lliv~~~~~p~~-----~~~~l~r~L~~a--~~~~~~~~ivlnK~Dl~~~~~~~~~~~~~~~~~~-~~~~~ 142 (327)
+..+.++|.+++|+++..|.. +...+.+++... ...+.|+++|.||+|+.+....+........+++ ..+.+
T Consensus 92 ~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 171 (198)
T 3t1o_A 92 KLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPDALPVEMVRAVVDPEGKFPVLEA 171 (198)
T ss_dssp HHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTTCCCHHHHHHHHCTTCCSCEEEC
T ss_pred HHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhcccccCHHHHHHHHHhcCCceEEEE
Confidence 345789999999999874311 122334444332 1257899999999999764333333344555677 88899
Q ss_pred cCcchhhHHHHHhh
Q 020346 143 SVESKLGLDSLLQR 156 (327)
Q Consensus 143 s~~~~~~l~~l~~~ 156 (327)
|+.+..+++++-..
T Consensus 172 Sa~~~~gv~~l~~~ 185 (198)
T 3t1o_A 172 VATEGKGVFETLKE 185 (198)
T ss_dssp BGGGTBTHHHHHHH
T ss_pred ecCCCcCHHHHHHH
Confidence 99888777766543
|
| >3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* | Back alignment and structure |
|---|
Probab=96.77 E-value=0.0017 Score=54.35 Aligned_cols=86 Identities=13% Similarity=0.183 Sum_probs=55.6
Q ss_pred cccccccccEEEEEeecCCCCCChHHHHHHHHHHHh----cCCCEEEEeecCCCCcHHH--HHHHHhhhhhcCCceeecc
Q 020346 70 LDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES----TGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLFCS 143 (327)
Q Consensus 70 ~r~~~anvD~lliv~~~~~p~~~~~~l~r~L~~a~~----~~~~~~ivlnK~Dl~~~~~--~~~~~~~~~~~~~~~~~~s 143 (327)
....+.++|.+++|+++..|. +...+..++..... .+.|+++|+||+|+.+... ...........+++.+.+|
T Consensus 87 ~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 165 (195)
T 3bc1_A 87 TTAFFRDAMGFLLLFDLTNEQ-SFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETS 165 (195)
T ss_dssp HHHTTTTCSEEEEEEETTCHH-HHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECC
T ss_pred HHHHHcCCCEEEEEEECCCHH-HHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCCEEEEE
Confidence 344578999999999987642 33334455444332 5789999999999975321 1122223334567888899
Q ss_pred CcchhhHHHHHhh
Q 020346 144 VESKLGLDSLLQR 156 (327)
Q Consensus 144 ~~~~~~l~~l~~~ 156 (327)
+.+..+++.+-..
T Consensus 166 a~~~~~v~~l~~~ 178 (195)
T 3bc1_A 166 AANGTNISHAIEM 178 (195)
T ss_dssp TTTCTTHHHHHHH
T ss_pred CCCCCCHHHHHHH
Confidence 8887777665443
|
| >3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* | Back alignment and structure |
|---|
Probab=96.76 E-value=0.0026 Score=51.97 Aligned_cols=85 Identities=14% Similarity=0.174 Sum_probs=52.2
Q ss_pred ccccccccEEEEEeecCCCCCChHHHHHHHHHHHh----cCCCEEEEeecCCCCcHHH--HHHHHhhhhhcCCceeeccC
Q 020346 71 DPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES----TGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLFCSV 144 (327)
Q Consensus 71 r~~~anvD~lliv~~~~~p~~~~~~l~r~L~~a~~----~~~~~~ivlnK~Dl~~~~~--~~~~~~~~~~~~~~~~~~s~ 144 (327)
+....++|.+++|+++..|. +...+..++..... .+.|+++|.||+|+.++.. ..........++.+.+.+|+
T Consensus 67 ~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 145 (166)
T 3q72_A 67 GHCMAMGDAYVIVYSVTDKG-SFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSA 145 (166)
T ss_dssp ------CCEEEEEEETTCHH-HHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHHHHTTCEEEECBG
T ss_pred hhhhhhCCEEEEEEECCCHH-HHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHHHHhCCcEEEecc
Confidence 34568999999999998653 34455555544433 4789999999999975421 11112233445678888999
Q ss_pred cchhhHHHHHhh
Q 020346 145 ESKLGLDSLLQR 156 (327)
Q Consensus 145 ~~~~~l~~l~~~ 156 (327)
.++.+++++-..
T Consensus 146 ~~~~gi~~l~~~ 157 (166)
T 3q72_A 146 ALHHNVQALFEG 157 (166)
T ss_dssp GGTBSHHHHHHH
T ss_pred CCCCCHHHHHHH
Confidence 888877776543
|
| >2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* | Back alignment and structure |
|---|
Probab=96.76 E-value=0.0012 Score=54.45 Aligned_cols=86 Identities=9% Similarity=0.199 Sum_probs=55.8
Q ss_pred cccccccccEEEEEeecCCCCCChHHHHHHHHHHH---hcCCCEEEEeecCCCCcHHH--HHHHHhhhhhcCCceeeccC
Q 020346 70 LDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE---STGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLFCSV 144 (327)
Q Consensus 70 ~r~~~anvD~lliv~~~~~p~~~~~~l~r~L~~a~---~~~~~~~ivlnK~Dl~~~~~--~~~~~~~~~~~~~~~~~~s~ 144 (327)
....+.++|.+++|+++..|. +...+..++.... ..+.|+++|+||+|+.++.. ...........+++.+.+|+
T Consensus 80 ~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 158 (179)
T 2y8e_A 80 IPSYIRDSTVAVVVYDITNTN-SFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSA 158 (179)
T ss_dssp SHHHHHTCSEEEEEEETTCHH-HHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEEEBT
T ss_pred HHHHhcCCCEEEEEEECCCHH-HHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccCcCCHHHHHHHHHHcCCeEEEEeC
Confidence 334578999999999987642 2334444443332 24778999999999975421 12222333445778888998
Q ss_pred cchhhHHHHHhh
Q 020346 145 ESKLGLDSLLQR 156 (327)
Q Consensus 145 ~~~~~l~~l~~~ 156 (327)
.+..+++.+-..
T Consensus 159 ~~~~~i~~l~~~ 170 (179)
T 2y8e_A 159 KAGYNVKQLFRR 170 (179)
T ss_dssp TTTBSHHHHHHH
T ss_pred CCCCCHHHHHHH
Confidence 887777766544
|
| >3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.76 E-value=0.0028 Score=52.39 Aligned_cols=86 Identities=10% Similarity=0.120 Sum_probs=56.4
Q ss_pred cccccccccEEEEEeecCCCCCChHHHHHHHHHHHh--cCCCEEEEeecCCCCcHHH--HHHHHhhhhhcCCceeeccCc
Q 020346 70 LDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES--TGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLFCSVE 145 (327)
Q Consensus 70 ~r~~~anvD~lliv~~~~~p~~~~~~l~r~L~~a~~--~~~~~~ivlnK~Dl~~~~~--~~~~~~~~~~~~~~~~~~s~~ 145 (327)
....+.++|.+++|+++..| .+...+..++..... ...|+++|+||+|+.+... ..........++++.+.+|+.
T Consensus 75 ~~~~~~~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 153 (181)
T 3tw8_B 75 TSTYYRGTHGVIVVYDVTSA-ESFVNVKRWLHEINQNCDDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAK 153 (181)
T ss_dssp CGGGGTTCSEEEEEEETTCH-HHHHHHHHHHHHHHHHCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECBTT
T ss_pred HHHHhccCCEEEEEEECCCH-HHHHHHHHHHHHHHHhCCCCCEEEEEECCCCchhcccCHHHHHHHHHHcCCeEEEEECC
Confidence 34457899999999998764 233445555544443 3578899999999875431 112223334457788899998
Q ss_pred chhhHHHHHhh
Q 020346 146 SKLGLDSLLQR 156 (327)
Q Consensus 146 ~~~~l~~l~~~ 156 (327)
+..+++.+-..
T Consensus 154 ~~~gi~~l~~~ 164 (181)
T 3tw8_B 154 ENVNVEEMFNC 164 (181)
T ss_dssp TTBSHHHHHHH
T ss_pred CCCCHHHHHHH
Confidence 88777766443
|
| >2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A | Back alignment and structure |
|---|
Probab=96.72 E-value=0.00056 Score=66.95 Aligned_cols=42 Identities=14% Similarity=0.173 Sum_probs=36.7
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecc
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~ 211 (327)
++++++|+|++|+||||++..|++ ++.+..|+|.+.+.++..
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~------------~l~~~g~~Vllvd~D~~r 138 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLAL------------YYKGKGRRPLLVAADTQR 138 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH------------HHHTTTCCEEEEECCSSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH------------HHHHcCCeEEEeeccccC
Confidence 688999999999999999999999 888888898887766543
|
| >2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} | Back alignment and structure |
|---|
Probab=96.71 E-value=0.00075 Score=57.23 Aligned_cols=24 Identities=25% Similarity=0.454 Sum_probs=21.4
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcC
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g 181 (327)
++..+.|+|++||||||+.+.|..
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999975
|
| >1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* | Back alignment and structure |
|---|
Probab=96.71 E-value=0.0016 Score=53.21 Aligned_cols=86 Identities=16% Similarity=0.190 Sum_probs=55.7
Q ss_pred cccccccccEEEEEeecCCCCCChHHHHHHHHHHH--hcCCCEEEEeecCCCCcHHH--HHHHHhhhhhcCCceeeccCc
Q 020346 70 LDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE--STGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLFCSVE 145 (327)
Q Consensus 70 ~r~~~anvD~lliv~~~~~p~~~~~~l~r~L~~a~--~~~~~~~ivlnK~Dl~~~~~--~~~~~~~~~~~~~~~~~~s~~ 145 (327)
.+....++|.+++|+++..+. +...+..++.... ..+.|+++|+||+|+.++.. ..........++++.+.+|+.
T Consensus 71 ~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 149 (168)
T 1z2a_A 71 TKAYYRGAQACVLVFSTTDRE-SFEAISSWREKVVAEVGDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVK 149 (168)
T ss_dssp CHHHHTTCCEEEEEEETTCHH-HHHTHHHHHHHHHHHHCSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTT
T ss_pred HHHHhcCCCEEEEEEECcCHH-HHHHHHHHHHHHHHhCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEecC
Confidence 334567999999999987642 2333444443332 24789999999999976321 122223334567888899988
Q ss_pred chhhHHHHHhh
Q 020346 146 SKLGLDSLLQR 156 (327)
Q Consensus 146 ~~~~l~~l~~~ 156 (327)
+..+++.+...
T Consensus 150 ~~~~i~~l~~~ 160 (168)
T 1z2a_A 150 EDLNVSEVFKY 160 (168)
T ss_dssp TTBSSHHHHHH
T ss_pred CCCCHHHHHHH
Confidence 87777766443
|
| >3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* | Back alignment and structure |
|---|
Probab=96.70 E-value=0.00061 Score=57.32 Aligned_cols=23 Identities=26% Similarity=0.303 Sum_probs=20.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHcCC
Q 020346 160 QTTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 160 ~~v~lvG~sG~GKSTLln~L~g~ 182 (327)
-.++|+|++|||||||+|.|.+.
T Consensus 15 ~ki~vvG~~~~GKssL~~~l~~~ 37 (198)
T 3t1o_A 15 FKIVYYGPGLSGKTTNLKWIYSK 37 (198)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHhh
Confidence 36899999999999999999983
|
| >2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A* | Back alignment and structure |
|---|
Probab=96.70 E-value=0.00085 Score=57.52 Aligned_cols=24 Identities=21% Similarity=0.235 Sum_probs=22.3
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcC
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g 181 (327)
+|..++|.|++||||||+.+.|..
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~ 26 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIME 26 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 477899999999999999999987
|
| >1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* | Back alignment and structure |
|---|
Probab=96.70 E-value=0.0014 Score=54.10 Aligned_cols=85 Identities=14% Similarity=0.119 Sum_probs=56.0
Q ss_pred ccccccccEEEEEeecCCCCCChHHHHHHHHHHHh---cCCCEEEEeecCCCCcHHH--HHHHHhhhhhcCCceeeccCc
Q 020346 71 DPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES---TGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLFCSVE 145 (327)
Q Consensus 71 r~~~anvD~lliv~~~~~p~~~~~~l~r~L~~a~~---~~~~~~ivlnK~Dl~~~~~--~~~~~~~~~~~~~~~~~~s~~ 145 (327)
+..+.++|.+++|+++..+ .+...+..++..... .+.|+++|+||+|+.++.. .+........++++.+.+|+.
T Consensus 82 ~~~~~~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 160 (179)
T 1z0f_A 82 RSYYRGAAGALMVYDITRR-STYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAK 160 (179)
T ss_dssp HHHHHTCSEEEEEEETTCH-HHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTT
T ss_pred HHHhccCCEEEEEEeCcCH-HHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCC
Confidence 3456899999999998764 233344555443332 5678999999999965321 122233344567788899998
Q ss_pred chhhHHHHHhh
Q 020346 146 SKLGLDSLLQR 156 (327)
Q Consensus 146 ~~~~l~~l~~~ 156 (327)
+..+++++-..
T Consensus 161 ~~~gi~~l~~~ 171 (179)
T 1z0f_A 161 TGENVEDAFLE 171 (179)
T ss_dssp TCTTHHHHHHH
T ss_pred CCCCHHHHHHH
Confidence 88777766443
|
| >2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.70 E-value=0.0056 Score=51.94 Aligned_cols=90 Identities=17% Similarity=0.207 Sum_probs=53.8
Q ss_pred ccccccccccccccEEEEEeecCCCCCChHHHH-HHHHHHH--hcCCCEEEEeecCCCCcHHHH--------------HH
Q 020346 65 RSTEILDPPVANVDHLLLLFSMDQPKLEPFALT-RFLVEAE--STGIPLTLALNKVELVDEEVL--------------NT 127 (327)
Q Consensus 65 R~~~l~r~~~anvD~lliv~~~~~p~~~~~~l~-r~L~~a~--~~~~~~~ivlnK~Dl~~~~~~--------------~~ 127 (327)
+...+.+..+.++|.+++|+++..+. +...+. .++.... ..+.|+++|.||+|+.+.... ..
T Consensus 80 ~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~ 158 (201)
T 2q3h_A 80 EFDKLRPLCYTNTDIFLLCFSVVSPS-SFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEA 158 (201)
T ss_dssp TCSSSGGGGGTTCSEEEEEEETTCHH-HHHHHHHTHHHHHHHHCSSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHH
T ss_pred HHHHHhHhhcCCCcEEEEEEECCCHH-HHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhchhhhhhhcccccccCCHHH
Confidence 33444455678999999999987642 222332 3433333 237899999999999753211 11
Q ss_pred HHhhhhhcCC-ceeeccCcchhhHHHHHh
Q 020346 128 WKSRLHTWGY-EPLFCSVESKLGLDSLLQ 155 (327)
Q Consensus 128 ~~~~~~~~~~-~~~~~s~~~~~~l~~l~~ 155 (327)
.......+++ ..+.+|+.+..+++.+-.
T Consensus 159 ~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~ 187 (201)
T 2q3h_A 159 AKLLAEEIKAASYIECSALTQKNLKEVFD 187 (201)
T ss_dssp HHHHHHHHTCSEEEECCTTTCTTHHHHHH
T ss_pred HHHHHHhcCCcEEEEEecCCCCCHHHHHH
Confidence 1112223455 667778777776666543
|
| >1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* | Back alignment and structure |
|---|
Probab=96.69 E-value=0.0017 Score=53.09 Aligned_cols=85 Identities=9% Similarity=0.146 Sum_probs=55.7
Q ss_pred ccccccccEEEEEeecCCCCCChHHHHHHHHHHHh---cCCCEEEEeecCCCCcHHH--HHHHHhhhhhcCCceeeccCc
Q 020346 71 DPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES---TGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLFCSVE 145 (327)
Q Consensus 71 r~~~anvD~lliv~~~~~p~~~~~~l~r~L~~a~~---~~~~~~ivlnK~Dl~~~~~--~~~~~~~~~~~~~~~~~~s~~ 145 (327)
+....++|.+++|+++..|. +...+..++..... ...|+++|.||+|+.++.. ...........+++.+.+|+.
T Consensus 73 ~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 151 (170)
T 1r2q_A 73 PMYYRGAQAAIVVYDITNEE-SFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAK 151 (170)
T ss_dssp HHHHTTCSEEEEEEETTCHH-HHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTT
T ss_pred HHhccCCCEEEEEEECCCHH-HHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccccCHHHHHHHHHHcCCeEEEEeCC
Confidence 34568999999999987642 34455555544443 3567888899999965321 112223334467788889998
Q ss_pred chhhHHHHHhh
Q 020346 146 SKLGLDSLLQR 156 (327)
Q Consensus 146 ~~~~l~~l~~~ 156 (327)
+..+++.+-..
T Consensus 152 ~g~gi~~l~~~ 162 (170)
T 1r2q_A 152 TSMNVNEIFMA 162 (170)
T ss_dssp TCTTHHHHHHH
T ss_pred CCCCHHHHHHH
Confidence 88877776544
|
| >1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... | Back alignment and structure |
|---|
Probab=96.68 E-value=0.0031 Score=51.43 Aligned_cols=85 Identities=14% Similarity=0.059 Sum_probs=54.8
Q ss_pred ccccccccEEEEEeecCCCCCChHHHHHHHHHHHh----cCCCEEEEeecCCCCcHHHHHHHHhh-----hhhcCCceee
Q 020346 71 DPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES----TGIPLTLALNKVELVDEEVLNTWKSR-----LHTWGYEPLF 141 (327)
Q Consensus 71 r~~~anvD~lliv~~~~~p~~~~~~l~r~L~~a~~----~~~~~~ivlnK~Dl~~~~~~~~~~~~-----~~~~~~~~~~ 141 (327)
+..+.++|.+++|+++..|. +...+..++..... .+.|+++|.||+|+.+......+... +...+++.+.
T Consensus 62 ~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (164)
T 1r8s_A 62 RHYFQNTQGLIFVVDSNDRE-RVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQA 140 (164)
T ss_dssp HHHTTTCSEEEEEEETTCGG-GHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEE
T ss_pred HHHhccCCEEEEEEECCCHH-HHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCCCHHHHHHHhCcccccCccEEEEE
Confidence 33578999999999997652 34445555544433 37899999999999764211222121 2223556788
Q ss_pred ccCcchhhHHHHHhh
Q 020346 142 CSVESKLGLDSLLQR 156 (327)
Q Consensus 142 ~s~~~~~~l~~l~~~ 156 (327)
+|+.+..+++++-..
T Consensus 141 ~Sa~~~~gi~~l~~~ 155 (164)
T 1r8s_A 141 TCATSGDGLYEGLDW 155 (164)
T ss_dssp CBTTTTBTHHHHHHH
T ss_pred cccCCCcCHHHHHHH
Confidence 888888777776544
|
| >2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.68 E-value=0.0033 Score=51.69 Aligned_cols=84 Identities=10% Similarity=0.134 Sum_probs=53.8
Q ss_pred cccccccEEEEEeecCCCCCChHHHHHHHHHHHh----cCCCEEEEeecCCCCcHHH--HHHHHhhhhhcCCceeeccCc
Q 020346 72 PPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES----TGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLFCSVE 145 (327)
Q Consensus 72 ~~~anvD~lliv~~~~~p~~~~~~l~r~L~~a~~----~~~~~~ivlnK~Dl~~~~~--~~~~~~~~~~~~~~~~~~s~~ 145 (327)
...+++|.+++|+++..+. +...+..++..... .+.|+++|.||+|+.+... ..........++++.+.+|+.
T Consensus 73 ~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~ 151 (175)
T 2nzj_A 73 SCLQGGSAYVIVYSIADRG-SFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAVVFDCKFIETSAT 151 (175)
T ss_dssp HTTTSCSEEEEEEETTCHH-HHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHHTSEEEECBTT
T ss_pred hhcccCCEEEEEEECCCHH-HHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHHHHcCCeEEEEecC
Confidence 3457899999999987642 33445555544433 3789999999999975421 111112233456788899998
Q ss_pred chhhHHHHHhh
Q 020346 146 SKLGLDSLLQR 156 (327)
Q Consensus 146 ~~~~l~~l~~~ 156 (327)
++.+++++-..
T Consensus 152 ~g~gi~~l~~~ 162 (175)
T 2nzj_A 152 LQHNVAELFEG 162 (175)
T ss_dssp TTBSHHHHHHH
T ss_pred CCCCHHHHHHH
Confidence 88877776544
|
| >2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A* | Back alignment and structure |
|---|
Probab=96.67 E-value=0.00087 Score=57.22 Aligned_cols=21 Identities=29% Similarity=0.525 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHcC
Q 020346 161 TTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g 181 (327)
.++|+|++||||||+.+.|..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 689999999999999999987
|
| >1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.67 E-value=0.0044 Score=51.50 Aligned_cols=86 Identities=10% Similarity=-0.013 Sum_probs=55.2
Q ss_pred cccccccccEEEEEeecCCCCCChHHHHHHHHHHH----hcCCCEEEEeecCCCCcHHHHHHHHhhh-----hhcCCcee
Q 020346 70 LDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE----STGIPLTLALNKVELVDEEVLNTWKSRL-----HTWGYEPL 140 (327)
Q Consensus 70 ~r~~~anvD~lliv~~~~~p~~~~~~l~r~L~~a~----~~~~~~~ivlnK~Dl~~~~~~~~~~~~~-----~~~~~~~~ 140 (327)
.+..+.++|.+++|+++..+ .+...+..++.... ..+.|+++|+||+|+.+......+...+ ...+++.+
T Consensus 79 ~~~~~~~~d~ii~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~ 157 (183)
T 1moz_A 79 WRCYYADTAAVIFVVDSTDK-DRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIV 157 (183)
T ss_dssp GGGTTTTEEEEEEEEETTCT-TTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHTTTTTCCSSCEEEE
T ss_pred HHHHhccCCEEEEEEECCCH-HHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEE
Confidence 34457899999999998765 34455555554443 3578999999999997542222222221 22345678
Q ss_pred eccCcchhhHHHHHhh
Q 020346 141 FCSVESKLGLDSLLQR 156 (327)
Q Consensus 141 ~~s~~~~~~l~~l~~~ 156 (327)
.+|+.+..+++++-..
T Consensus 158 ~~Sa~~~~gi~~l~~~ 173 (183)
T 1moz_A 158 ASSAIKGEGITEGLDW 173 (183)
T ss_dssp EEBGGGTBTHHHHHHH
T ss_pred EccCCCCcCHHHHHHH
Confidence 8888887777766443
|
| >1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.65 E-value=0.0022 Score=54.68 Aligned_cols=87 Identities=15% Similarity=0.236 Sum_probs=56.5
Q ss_pred ccccccccccEEEEEeecCCCCCChHHHHHHHHHHHh---cCCCEEEEeecCCCCcHHH--HHHHHhhhhhcCCceeecc
Q 020346 69 ILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES---TGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLFCS 143 (327)
Q Consensus 69 l~r~~~anvD~lliv~~~~~p~~~~~~l~r~L~~a~~---~~~~~~ivlnK~Dl~~~~~--~~~~~~~~~~~~~~~~~~s 143 (327)
+....+.++|.+++|+++..+. +...+..++..... .+.|+++|+||+|+.+... ..........++++.+.+|
T Consensus 73 ~~~~~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 151 (203)
T 1zbd_A 73 ITTAYYRGAMGFILMYDITNEE-SFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEAS 151 (203)
T ss_dssp HHHTTGGGCSEEEEEEETTCHH-HHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHHTCEEEECB
T ss_pred hHHHhhcCCCEEEEEEECcCHH-HHHHHHHHHHHHHHhcCCCCCEEEEEECcccCcccccCHHHHHHHHHHCCCeEEEEE
Confidence 3445678999999999987642 33345555544443 4789999999999975321 1112223344577888889
Q ss_pred CcchhhHHHHHhh
Q 020346 144 VESKLGLDSLLQR 156 (327)
Q Consensus 144 ~~~~~~l~~l~~~ 156 (327)
+.+..+++.+-..
T Consensus 152 a~~~~gi~~l~~~ 164 (203)
T 1zbd_A 152 AKDNINVKQTFER 164 (203)
T ss_dssp TTTTBSSHHHHHH
T ss_pred CCCCCCHHHHHHH
Confidence 8877776665443
|
| >1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A | Back alignment and structure |
|---|
Probab=96.65 E-value=0.0018 Score=52.90 Aligned_cols=86 Identities=9% Similarity=0.125 Sum_probs=55.0
Q ss_pred cccccccccEEEEEeecCCCCCChHHHHHHHHHHHh---cCCCEEEEeecCCCCcHHH-HHHHHhhhhhcCCceeeccCc
Q 020346 70 LDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES---TGIPLTLALNKVELVDEEV-LNTWKSRLHTWGYEPLFCSVE 145 (327)
Q Consensus 70 ~r~~~anvD~lliv~~~~~p~~~~~~l~r~L~~a~~---~~~~~~ivlnK~Dl~~~~~-~~~~~~~~~~~~~~~~~~s~~ 145 (327)
....+.++|.+++|+++..+. +...+..++..... .+.|+++|+||+|+.+... ..........++++.+.+|+.
T Consensus 69 ~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 147 (170)
T 1g16_A 69 TTAYYRGAMGIILVYDITDER-TFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKELGIPFIESSAK 147 (170)
T ss_dssp CHHHHTTEEEEEEEEETTCHH-HHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTCCSCHHHHHHHHHHHTCCEEECBTT
T ss_pred HHHHhccCCEEEEEEECCCHH-HHHHHHHHHHHHHHhcCCCCcEEEEEECccCCcCccCHHHHHHHHHHcCCeEEEEECC
Confidence 334568999999999987643 33345555544433 3778999999999943211 111222234457788889988
Q ss_pred chhhHHHHHhh
Q 020346 146 SKLGLDSLLQR 156 (327)
Q Consensus 146 ~~~~l~~l~~~ 156 (327)
+..+++++-..
T Consensus 148 ~~~gv~~l~~~ 158 (170)
T 1g16_A 148 NDDNVNEIFFT 158 (170)
T ss_dssp TTBSHHHHHHH
T ss_pred CCCCHHHHHHH
Confidence 87777766443
|
| >2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.63 E-value=0.00092 Score=58.82 Aligned_cols=23 Identities=39% Similarity=0.641 Sum_probs=21.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHcCC
Q 020346 160 QTTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 160 ~~v~lvG~sG~GKSTLln~L~g~ 182 (327)
-.++|+|.+|||||||+|.+.+.
T Consensus 38 ~kVvlvG~~~vGKSSLl~r~~~~ 60 (211)
T 2g3y_A 38 YRVVLIGEQGVGKSTLANIFAGV 60 (211)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46999999999999999999973
|
| >2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* | Back alignment and structure |
|---|
Probab=96.63 E-value=0.0042 Score=53.06 Aligned_cols=89 Identities=13% Similarity=0.137 Sum_probs=57.4
Q ss_pred cccccccccccEEEEEeecCCCCCChHHHHHHHHHHHh---cCCCEEEEeecCCCCcHHH--HHHHHhhhhhcCCceeec
Q 020346 68 EILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES---TGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLFC 142 (327)
Q Consensus 68 ~l~r~~~anvD~lliv~~~~~p~~~~~~l~r~L~~a~~---~~~~~~ivlnK~Dl~~~~~--~~~~~~~~~~~~~~~~~~ 142 (327)
.+....+.++|.+++|+++..|. +...+..++..... ...|+++|+||+|+.+... ...........+++.+.+
T Consensus 72 ~~~~~~~~~~d~vilv~d~~~~~-s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (206)
T 2bcg_Y 72 TITSSYYRGSHGIIIVYDVTDQE-SFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLET 150 (206)
T ss_dssp CCCGGGGTTCSEEEEEEETTCHH-HHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEEC
T ss_pred HHHHHhccCCCEEEEEEECcCHH-HHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEE
Confidence 33445678999999999987643 33445555544432 4578999999999975321 111122233467788888
Q ss_pred cCcchhhHHHHHhhc
Q 020346 143 SVESKLGLDSLLQRL 157 (327)
Q Consensus 143 s~~~~~~l~~l~~~l 157 (327)
|+.+..+++.+-..+
T Consensus 151 Sa~~g~gi~~l~~~l 165 (206)
T 2bcg_Y 151 SALDSTNVEDAFLTM 165 (206)
T ss_dssp CTTTCTTHHHHHHHH
T ss_pred eCCCCCCHHHHHHHH
Confidence 988877777665543
|
| >2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=96.63 E-value=0.00092 Score=57.40 Aligned_cols=24 Identities=29% Similarity=0.376 Sum_probs=21.9
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcC
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g 181 (327)
+|..++|.|++||||||+.+.|..
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Confidence 467899999999999999999986
|
| >3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C | Back alignment and structure |
|---|
Probab=96.62 E-value=0.00076 Score=56.14 Aligned_cols=24 Identities=33% Similarity=0.404 Sum_probs=21.3
Q ss_pred CCEEEEEcCCCCCHHHHHHHHcCC
Q 020346 159 DQTTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 159 g~~v~lvG~sG~GKSTLln~L~g~ 182 (327)
.-.++|+|++|||||||+|.+.+.
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 357999999999999999999873
|
| >1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.62 E-value=0.00093 Score=55.83 Aligned_cols=22 Identities=23% Similarity=0.412 Sum_probs=20.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHcC
Q 020346 160 QTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 160 ~~v~lvG~sG~GKSTLln~L~g 181 (327)
..+.|+|+|||||||+.+.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4689999999999999999985
|
| >2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... | Back alignment and structure |
|---|
Probab=96.61 E-value=0.0026 Score=54.49 Aligned_cols=89 Identities=20% Similarity=0.322 Sum_probs=54.5
Q ss_pred ccccccccccccEEEEEeecCCCCCChHHH-HHHHHHHHh--cCCCEEEEeecCCCCcHHHHHH--------------HH
Q 020346 67 TEILDPPVANVDHLLLLFSMDQPKLEPFAL-TRFLVEAES--TGIPLTLALNKVELVDEEVLNT--------------WK 129 (327)
Q Consensus 67 ~~l~r~~~anvD~lliv~~~~~p~~~~~~l-~r~L~~a~~--~~~~~~ivlnK~Dl~~~~~~~~--------------~~ 129 (327)
..+.+..+.++|.+++|+++..+. +...+ ..++..+.. .+.|+++|+||+|+.+...... ..
T Consensus 87 ~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~ 165 (201)
T 2gco_A 87 DRLRPLSYPDTDVILMCFSIDSPD-SLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGR 165 (201)
T ss_dssp TTTGGGGCTTCSEEEEEEETTCHH-HHHHHHHTHHHHHHHHSTTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHH
T ss_pred HHHHHHhcCCCCEEEEEEECCCHH-HHHHHHHHHHHHHHHhCCCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHH
Confidence 334444678999999999987642 23333 334433333 3789999999999976532211 11
Q ss_pred hhhhhcCC-ceeeccCcchhhHHHHHhh
Q 020346 130 SRLHTWGY-EPLFCSVESKLGLDSLLQR 156 (327)
Q Consensus 130 ~~~~~~~~-~~~~~s~~~~~~l~~l~~~ 156 (327)
.....+++ ..+.+|+.+..+++++-..
T Consensus 166 ~~~~~~~~~~~~~~SA~~g~gi~~l~~~ 193 (201)
T 2gco_A 166 DMANRISAFGYLECSAKTKEGVREVFEM 193 (201)
T ss_dssp HHHHHTTCSEEEECCTTTCTTHHHHHHH
T ss_pred HHHHhCCCcEEEEeeCCCCCCHHHHHHH
Confidence 12233455 6677888777777666443
|
| >2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* | Back alignment and structure |
|---|
Probab=96.60 E-value=0.0021 Score=54.41 Aligned_cols=85 Identities=14% Similarity=0.133 Sum_probs=55.4
Q ss_pred ccccccccEEEEEeecCCCCCChHHHHHHHHHHHh---cCCCEEEEeecCCCCcHHH--HHHHHhhhhhcCCceeeccCc
Q 020346 71 DPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES---TGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLFCSVE 145 (327)
Q Consensus 71 r~~~anvD~lliv~~~~~p~~~~~~l~r~L~~a~~---~~~~~~ivlnK~Dl~~~~~--~~~~~~~~~~~~~~~~~~s~~ 145 (327)
+..+.++|.+++|+++..+. +...+..++..... .+.|+++|+||+|+.+... ...........++..+.+|+.
T Consensus 88 ~~~~~~~d~ii~v~d~~~~~-s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~ 166 (191)
T 2a5j_A 88 RSYYRGAAGALLVYDITRRE-TFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAK 166 (191)
T ss_dssp HHHHTTCSEEEEEEETTCHH-HHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTT
T ss_pred HHHhccCCEEEEEEECCCHH-HHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCccccCHHHHHHHHHHcCCEEEEEeCC
Confidence 34578999999999987642 33345555544443 3778999999999965321 111222334457788888988
Q ss_pred chhhHHHHHhh
Q 020346 146 SKLGLDSLLQR 156 (327)
Q Consensus 146 ~~~~l~~l~~~ 156 (327)
+..+++++-..
T Consensus 167 ~~~gi~~l~~~ 177 (191)
T 2a5j_A 167 TACNVEEAFIN 177 (191)
T ss_dssp TCTTHHHHHHH
T ss_pred CCCCHHHHHHH
Confidence 87777766443
|
| >3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=96.60 E-value=0.0011 Score=56.12 Aligned_cols=23 Identities=26% Similarity=0.368 Sum_probs=21.0
Q ss_pred CCEEEEEcCCCCCHHHHHHHHcC
Q 020346 159 DQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 159 g~~v~lvG~sG~GKSTLln~L~g 181 (327)
+..++|+|++||||||+.+.|..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999999975
|
| >2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A* | Back alignment and structure |
|---|
Probab=96.60 E-value=0.0011 Score=57.22 Aligned_cols=24 Identities=25% Similarity=0.261 Sum_probs=22.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcC
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g 181 (327)
+|..++|.|++||||||+.+.|..
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHH
Confidence 578999999999999999999975
|
| >2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A* | Back alignment and structure |
|---|
Probab=96.58 E-value=0.011 Score=48.80 Aligned_cols=85 Identities=21% Similarity=0.323 Sum_probs=53.5
Q ss_pred cccccccccEEEEEeecCCCCCChHHHHHHHHHHHhcCCCEEEEeecCCCCcH--HHHHHHHhhhh----hcC--Cceee
Q 020346 70 LDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDE--EVLNTWKSRLH----TWG--YEPLF 141 (327)
Q Consensus 70 ~r~~~anvD~lliv~~~~~p~~~~~~l~r~L~~a~~~~~~~~ivlnK~Dl~~~--~~~~~~~~~~~----~~~--~~~~~ 141 (327)
....+.++|.+++|+++..+.. ...+ ..+......+.|+++|+||+|+.+. +.......... .++ ++.+.
T Consensus 72 ~~~~~~~~d~~i~v~d~~~~~~-~~~~-~~l~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (178)
T 2lkc_A 72 RARGAQVTDIVILVVAADDGVM-PQTV-EAINHAKAANVPIIVAINKMDKPEANPDRVMQELMEYNLVPEEWGGDTIFCK 149 (178)
T ss_dssp CCSSCCCCCEEEEEEETTCCCC-HHHH-HHHHHHGGGSCCEEEEEETTTSSCSCHHHHHHHHTTTTCCBTTTTSSEEEEE
T ss_pred HHHHHhhCCEEEEEEECCCCCc-HHHH-HHHHHHHhCCCCEEEEEECccCCcCCHHHHHHHHHhcCcChhHcCCcccEEE
Confidence 3445788999999999876532 2222 3344445568899999999999763 22222222221 122 46788
Q ss_pred ccCcchhhHHHHHhh
Q 020346 142 CSVESKLGLDSLLQR 156 (327)
Q Consensus 142 ~s~~~~~~l~~l~~~ 156 (327)
+|+.+..+++.+-..
T Consensus 150 ~Sa~~~~gv~~l~~~ 164 (178)
T 2lkc_A 150 LSAKTKEGLDHLLEM 164 (178)
T ss_dssp CCSSSSHHHHHHHHH
T ss_pred EecCCCCCHHHHHHH
Confidence 888888777766443
|
| >2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* | Back alignment and structure |
|---|
Probab=96.58 E-value=0.0033 Score=53.56 Aligned_cols=84 Identities=12% Similarity=0.073 Sum_probs=54.5
Q ss_pred cccccccEEEEEeecCCCCCChHHHHHHHHHHHh----cCCCEEEEeecCCCCcHHHHHHHHhh-----hhhcCCceeec
Q 020346 72 PPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES----TGIPLTLALNKVELVDEEVLNTWKSR-----LHTWGYEPLFC 142 (327)
Q Consensus 72 ~~~anvD~lliv~~~~~p~~~~~~l~r~L~~a~~----~~~~~~ivlnK~Dl~~~~~~~~~~~~-----~~~~~~~~~~~ 142 (327)
..+.++|.+++|+++..|. +...+..++..... .+.|+++|.||+|+.+......+... ....+++.+.+
T Consensus 92 ~~~~~~d~iilv~D~~~~~-s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 170 (192)
T 2b6h_A 92 HYFQNTQGLIFVVDSNDRE-RVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQAT 170 (192)
T ss_dssp HHHHTCCEEEEEEETTCGG-GHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEEC
T ss_pred HHhccCCEEEEEEECCCHH-HHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEEC
Confidence 3568999999999997653 34455555544433 37899999999999764222222221 12234567888
Q ss_pred cCcchhhHHHHHhh
Q 020346 143 SVESKLGLDSLLQR 156 (327)
Q Consensus 143 s~~~~~~l~~l~~~ 156 (327)
|+.+..+++++-..
T Consensus 171 SA~~g~gi~~l~~~ 184 (192)
T 2b6h_A 171 CATQGTGLYDGLDW 184 (192)
T ss_dssp BTTTTBTHHHHHHH
T ss_pred cCCCcCCHHHHHHH
Confidence 88887777776543
|
| >2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A | Back alignment and structure |
|---|
Probab=96.58 E-value=0.00062 Score=65.39 Aligned_cols=21 Identities=52% Similarity=0.659 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHcC
Q 020346 161 TTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g 181 (327)
.++|||+||||||||+|+|.+
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~ 23 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTR 23 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 589999999999999999998
|
| >3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A* | Back alignment and structure |
|---|
Probab=96.57 E-value=0.0087 Score=57.61 Aligned_cols=83 Identities=20% Similarity=0.214 Sum_probs=54.4
Q ss_pred ccccccEEEEEeecCCCCCChHHHHHHHHHHHhcC-CCEEEEeecCCCCcHHHHHHHHhhh----hhc---CCceeeccC
Q 020346 73 PVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTG-IPLTLALNKVELVDEEVLNTWKSRL----HTW---GYEPLFCSV 144 (327)
Q Consensus 73 ~~anvD~lliv~~~~~p~~~~~~l~r~L~~a~~~~-~~~~ivlnK~Dl~~~~~~~~~~~~~----~~~---~~~~~~~s~ 144 (327)
.++++|.+++|+++..+.. .......+..+...+ +|+++|+||+|+.+.+........+ ... +++.+.+|+
T Consensus 95 ~~~~~D~~ilVvda~~~~~-~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~vSA 173 (403)
T 3sjy_A 95 GAALMDGAILVVAANEPFP-QPQTREHFVALGIIGVKNLIIVQNKVDVVSKEEALSQYRQIKQFTKGTWAENVPIIPVSA 173 (403)
T ss_dssp HHTTCSEEEEEEETTSCSS-CHHHHHHHHHHHHHTCCCEEEEEECGGGSCHHHHHHHHHHHHHHHTTSTTTTCCEEECBT
T ss_pred HHhhCCEEEEEEECCCCCC-cHHHHHHHHHHHHcCCCCEEEEEECccccchHHHHHHHHHHHHHHHhhCCCCCEEEEEEC
Confidence 4689999999999987542 334444555555444 4889999999998876443322222 222 456788898
Q ss_pred cchhhHHHHHhh
Q 020346 145 ESKLGLDSLLQR 156 (327)
Q Consensus 145 ~~~~~l~~l~~~ 156 (327)
.+..+++.+...
T Consensus 174 ~~g~gi~~L~~~ 185 (403)
T 3sjy_A 174 LHKINIDSLIEG 185 (403)
T ss_dssp TTTBSHHHHHHH
T ss_pred CCCcChHHHHHH
Confidence 877776665443
|
| >1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* | Back alignment and structure |
|---|
Probab=96.56 E-value=0.0018 Score=52.64 Aligned_cols=85 Identities=20% Similarity=0.283 Sum_probs=55.2
Q ss_pred ccccccccEEEEEeecCCCCCChHHHHHHHHHHH----hcCCCEEEEeecCCCCcHHH--HHHHHhhhhhcCCceeeccC
Q 020346 71 DPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE----STGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLFCSV 144 (327)
Q Consensus 71 r~~~anvD~lliv~~~~~p~~~~~~l~r~L~~a~----~~~~~~~ivlnK~Dl~~~~~--~~~~~~~~~~~~~~~~~~s~ 144 (327)
+....++|.+++|+++..|. +...+..++.... ..+.|+++|+||+|+.+..+ ..........++++.+.+|+
T Consensus 70 ~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 148 (168)
T 1u8z_A 70 DNYFRSGEGFLCVFSITEME-SFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSA 148 (168)
T ss_dssp HHHHHHCSEEEEEEETTCHH-HHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCT
T ss_pred HHHhhcCCEEEEEEECCCHH-HHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCC
Confidence 34567999999999987643 2333444433332 23789999999999975421 12223334456778889999
Q ss_pred cchhhHHHHHhh
Q 020346 145 ESKLGLDSLLQR 156 (327)
Q Consensus 145 ~~~~~l~~l~~~ 156 (327)
.++.+++++-..
T Consensus 149 ~~~~gi~~l~~~ 160 (168)
T 1u8z_A 149 KTRANVDKVFFD 160 (168)
T ss_dssp TTCTTHHHHHHH
T ss_pred CCCCCHHHHHHH
Confidence 888777776543
|
| >2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A | Back alignment and structure |
|---|
Probab=96.56 E-value=0.0012 Score=56.12 Aligned_cols=24 Identities=21% Similarity=0.422 Sum_probs=22.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcC
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g 181 (327)
++..++|+|++||||||+.+.|..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999999975
|
| >3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A | Back alignment and structure |
|---|
Probab=96.56 E-value=0.0011 Score=56.07 Aligned_cols=24 Identities=33% Similarity=0.472 Sum_probs=21.6
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcC
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g 181 (327)
++..+.|+|+|||||||+.+.|..
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHH
Confidence 467899999999999999999984
|
| >3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* | Back alignment and structure |
|---|
Probab=96.56 E-value=0.004 Score=52.28 Aligned_cols=86 Identities=15% Similarity=0.253 Sum_probs=53.4
Q ss_pred cccccccccEEEEEeecCCCCCChHHHHHHHHHHHh----cCCCEEEEeecCCCCcHHH-HHHHHhhhhhcCCceeeccC
Q 020346 70 LDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES----TGIPLTLALNKVELVDEEV-LNTWKSRLHTWGYEPLFCSV 144 (327)
Q Consensus 70 ~r~~~anvD~lliv~~~~~p~~~~~~l~r~L~~a~~----~~~~~~ivlnK~Dl~~~~~-~~~~~~~~~~~~~~~~~~s~ 144 (327)
....+.++|.+++|+++..+. +...+..++..... .+.|+++|+||+|+.+... ..........++++.+.+|.
T Consensus 86 ~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa 164 (190)
T 3con_A 86 RDQYMRTGEGFLCVFAINNSK-SFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTRTVDTKQAHELAKSYGIPFIETSA 164 (190)
T ss_dssp ----CTTCSEEEEEEETTCHH-HHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHHHHTCCEEECCT
T ss_pred HHHhhCcCCEEEEEEECcCHH-HHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCcccCCHHHHHHHHHHcCCeEEEEeC
Confidence 344567999999999987643 33345544433332 3789999999999875211 11222233445778888998
Q ss_pred cchhhHHHHHhh
Q 020346 145 ESKLGLDSLLQR 156 (327)
Q Consensus 145 ~~~~~l~~l~~~ 156 (327)
.+..+++++-..
T Consensus 165 ~~~~gi~~l~~~ 176 (190)
T 3con_A 165 KTRQGVEDAFYT 176 (190)
T ss_dssp TTCTTHHHHHHH
T ss_pred CCCCCHHHHHHH
Confidence 887777766443
|
| >3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C | Back alignment and structure |
|---|
Probab=96.55 E-value=0.0024 Score=53.07 Aligned_cols=90 Identities=17% Similarity=0.262 Sum_probs=56.1
Q ss_pred cccccccccccccEEEEEeecCCCCCChHHHH-HHHHHHHh--cCCCEEEEeecCCCCcHHHH------------HHHHh
Q 020346 66 STEILDPPVANVDHLLLLFSMDQPKLEPFALT-RFLVEAES--TGIPLTLALNKVELVDEEVL------------NTWKS 130 (327)
Q Consensus 66 ~~~l~r~~~anvD~lliv~~~~~p~~~~~~l~-r~L~~a~~--~~~~~~ivlnK~Dl~~~~~~------------~~~~~ 130 (327)
...+.+..+.++|.+++|+++..|. +...+. .++..... .+.|+++|.||+|+.+.... .....
T Consensus 69 ~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~ 147 (182)
T 3bwd_D 69 YNRLRPLSYRGADVFILAFSLISKA-SYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEE 147 (182)
T ss_dssp TTTTGGGGGTTCSEEEEEEETTCHH-HHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHH
T ss_pred hhhhHHhhccCCCEEEEEEECCCHH-HHHHHHHHHHHHHHHhCCCCCEEEEEechhhhcCcccccccccCCCCCHHHHHH
Confidence 3344455678999999999987642 223333 34433332 37899999999999654321 11122
Q ss_pred hhhhcCC-ceeeccCcchhhHHHHHhh
Q 020346 131 RLHTWGY-EPLFCSVESKLGLDSLLQR 156 (327)
Q Consensus 131 ~~~~~~~-~~~~~s~~~~~~l~~l~~~ 156 (327)
....+++ +.+.+|+.+..+++.+-..
T Consensus 148 ~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 174 (182)
T 3bwd_D 148 LKKLIGAPAYIECSSKSQENVKGVFDA 174 (182)
T ss_dssp HHHHHTCSEEEECCTTTCTTHHHHHHH
T ss_pred HHHHcCCCEEEEEECCCCCCHHHHHHH
Confidence 2234565 7788888888777766543
|
| >1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.55 E-value=0.0011 Score=55.92 Aligned_cols=21 Identities=29% Similarity=0.651 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHcC
Q 020346 161 TTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g 181 (327)
.++|.|++||||||+.+.|..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999986
|
| >1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A* | Back alignment and structure |
|---|
Probab=96.55 E-value=0.0012 Score=56.87 Aligned_cols=24 Identities=29% Similarity=0.329 Sum_probs=22.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcC
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g 181 (327)
+|..++|.|++||||||+.+.|..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999999984
|
| >2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A* | Back alignment and structure |
|---|
Probab=96.55 E-value=0.0021 Score=59.09 Aligned_cols=58 Identities=22% Similarity=0.245 Sum_probs=0.0
Q ss_pred EEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcceeeEEEEEEEccCCCe--EE
Q 020346 161 TTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGY--LA 238 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~tt~~i~~v~q~~~~~--i~ 238 (327)
.++|+|.+|||||||+|.+.+ +.-........+ ......+........ ++
T Consensus 157 ~i~i~G~~~~GKssli~~~~~------------------------~~~~~~~~~t~~----~~~~~~~~~~~~~~~~~l~ 208 (332)
T 2wkq_A 157 KCVVVGDGAVGKTCLLISYTT------------------------NAFPGEYIPTVF----DNYSANVMVDGKPVNLGLW 208 (332)
T ss_dssp EEEEEESTTSSHHHHHHHHHH------------------------SCCCCSCCCCSE----EEEEEEEEETTEEEEEEEE
T ss_pred EEEEECCCCCChHHHHHHHHh------------------------CCCCcccCCccc----ceeEEEEEECCEEEEEEEE
Q ss_pred eCcccCCc
Q 020346 239 DTPGFNQP 246 (327)
Q Consensus 239 Dtpg~~~~ 246 (327)
||||....
T Consensus 209 Dt~G~~~~ 216 (332)
T 2wkq_A 209 DTAGLEDY 216 (332)
T ss_dssp EECCCGGG
T ss_pred eCCCchhh
|
| >1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A* | Back alignment and structure |
|---|
Probab=96.54 E-value=0.00051 Score=59.42 Aligned_cols=21 Identities=33% Similarity=0.559 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHcC
Q 020346 161 TTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g 181 (327)
.++|+|++||||||+++.|..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 689999999999999999987
|
| >2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* | Back alignment and structure |
|---|
Probab=96.52 E-value=0.0021 Score=53.44 Aligned_cols=85 Identities=20% Similarity=0.283 Sum_probs=55.4
Q ss_pred ccccccccEEEEEeecCCCCCChHHHHHHHHHHH----hcCCCEEEEeecCCCCcHHH--HHHHHhhhhhcCCceeeccC
Q 020346 71 DPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE----STGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLFCSV 144 (327)
Q Consensus 71 r~~~anvD~lliv~~~~~p~~~~~~l~r~L~~a~----~~~~~~~ivlnK~Dl~~~~~--~~~~~~~~~~~~~~~~~~s~ 144 (327)
+..+.++|.+++|+++..+. +...+..++.... ..+.|+++|+||+|+.+... ..........++++.+.+|+
T Consensus 84 ~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 162 (187)
T 2a9k_A 84 DNYFRSGEGFLCVFSITEME-SFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSA 162 (187)
T ss_dssp HHHHHHCSEEEEEEETTCHH-HHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCT
T ss_pred HHHhccCCEEEEEEECcCHH-HHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCC
Confidence 34568999999999987642 2233433333222 23789999999999975421 22233344556788889999
Q ss_pred cchhhHHHHHhh
Q 020346 145 ESKLGLDSLLQR 156 (327)
Q Consensus 145 ~~~~~l~~l~~~ 156 (327)
.+..+++++-..
T Consensus 163 ~~~~gi~~l~~~ 174 (187)
T 2a9k_A 163 KTRANVDKVFFD 174 (187)
T ss_dssp TTCTTHHHHHHH
T ss_pred CCCCCHHHHHHH
Confidence 888777766544
|
| >3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.52 E-value=0.0056 Score=52.20 Aligned_cols=89 Identities=16% Similarity=0.208 Sum_probs=57.6
Q ss_pred cccccccccccEEEEEeecCCCCCChHHHHHHHHHHHh----cCCCEEEEeecCCCCcHHHH--HHHHhhhhhcCCceee
Q 020346 68 EILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES----TGIPLTLALNKVELVDEEVL--NTWKSRLHTWGYEPLF 141 (327)
Q Consensus 68 ~l~r~~~anvD~lliv~~~~~p~~~~~~l~r~L~~a~~----~~~~~~ivlnK~Dl~~~~~~--~~~~~~~~~~~~~~~~ 141 (327)
.+....+.++|.+++|+++..+. +...+..++..... .+.|+++|.||+|+.+.... .........+++..+.
T Consensus 87 ~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~ 165 (201)
T 3oes_A 87 ILPYSFIIGVHGYVLVYSVTSLH-SFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGATFME 165 (201)
T ss_dssp CCCGGGTTTCCEEEEEEETTCHH-HHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEE
T ss_pred HHHHHHHhcCCEEEEEEeCCCHH-HHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHHHhCCeEEE
Confidence 33445678999999999987642 33345555444432 36799999999999754311 1112233446778889
Q ss_pred ccCcchhhHHHHHhhc
Q 020346 142 CSVESKLGLDSLLQRL 157 (327)
Q Consensus 142 ~s~~~~~~l~~l~~~l 157 (327)
+|+.+..+++++-..+
T Consensus 166 ~Sa~~~~~v~~l~~~l 181 (201)
T 3oes_A 166 SSARENQLTQGIFTKV 181 (201)
T ss_dssp CCTTCHHHHHHHHHHH
T ss_pred EeCCCCCCHHHHHHHH
Confidence 9998888777765443
|
| >1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* | Back alignment and structure |
|---|
Probab=96.52 E-value=0.0041 Score=50.77 Aligned_cols=88 Identities=13% Similarity=0.127 Sum_probs=56.0
Q ss_pred cccccccccccEEEEEeecCCCCCChHHHHHHHHHHHh---cCCCEEEEeecCCCCcHHH--HHHHHhhhhhcCCceeec
Q 020346 68 EILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES---TGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLFC 142 (327)
Q Consensus 68 ~l~r~~~anvD~lliv~~~~~p~~~~~~l~r~L~~a~~---~~~~~~ivlnK~Dl~~~~~--~~~~~~~~~~~~~~~~~~ 142 (327)
.+....+.++|.+++|+++..|. +...+..++..... ...|+++|.||+|+.+..+ ...........+++.+.+
T Consensus 70 ~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~ 148 (170)
T 1z0j_A 70 ALAPMYYRGSAAAIIVYDITKEE-TFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVET 148 (170)
T ss_dssp GGTHHHHTTCSEEEEEEETTCHH-HHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEEC
T ss_pred cccHhhCcCCCEEEEEEECcCHH-HHHHHHHHHHHHHHhCCCCCcEEEEEECCccccccccCHHHHHHHHHHcCCEEEEE
Confidence 33344568999999999987643 33344555444432 3567888999999976421 111122234467788899
Q ss_pred cCcchhhHHHHHhh
Q 020346 143 SVESKLGLDSLLQR 156 (327)
Q Consensus 143 s~~~~~~l~~l~~~ 156 (327)
|+.+..+++.+-..
T Consensus 149 Sa~~~~~i~~l~~~ 162 (170)
T 1z0j_A 149 SAKNAININELFIE 162 (170)
T ss_dssp BTTTTBSHHHHHHH
T ss_pred eCCCCcCHHHHHHH
Confidence 99888877776544
|
| >2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=96.51 E-value=0.00098 Score=57.87 Aligned_cols=23 Identities=30% Similarity=0.395 Sum_probs=21.1
Q ss_pred CCEEEEEcCCCCCHHHHHHHHcC
Q 020346 159 DQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 159 g~~v~lvG~sG~GKSTLln~L~g 181 (327)
-..++|+|++|||||||+|.|++
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~ 52 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIE 52 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHH
Confidence 35799999999999999999987
|
| >3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus} | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0018 Score=63.43 Aligned_cols=56 Identities=23% Similarity=0.300 Sum_probs=0.0
Q ss_pred EEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccC------------------------
Q 020346 161 TTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKS------------------------ 216 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~------------------------ 216 (327)
.++++|.+|+|||||+|.|++ ....+....
T Consensus 19 ~i~iiG~~d~GKSTL~~~Ll~--------------------------~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~ 72 (439)
T 3j2k_7 19 NVVFIGHVDAGKSTIGGQIMY--------------------------LTGMVDKRTLEKYEREAKEKNRETWYLSWALDT 72 (439)
T ss_pred EEEEEeCCCCCHHHHHHHHHH--------------------------HcCCCchHHHHHHHHHHHhccccchhhhhhhcc
Q ss_pred -------CCcceeeEEEEEEEccC---CCeEEeCcccCCc
Q 020346 217 -------GRGKHTTRHVSLLPLSG---GGYLADTPGFNQP 246 (327)
Q Consensus 217 -------~~g~~tt~~i~~v~q~~---~~~i~Dtpg~~~~ 246 (327)
| +|..+.+..... ...++||||...+
T Consensus 73 ~~~er~~G----iTid~~~~~~~~~~~~~~iiDTPGh~~f 108 (439)
T 3j2k_7 73 NQEERDKG----KTVEVGRAYFETEKKHFTILDAPGHKSF 108 (439)
T ss_pred chhHhhcC----ceEEEeEEEEecCCeEEEEEECCChHHH
|
| >2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C | Back alignment and structure |
|---|
Probab=96.50 E-value=0.002 Score=54.68 Aligned_cols=85 Identities=14% Similarity=0.070 Sum_probs=48.3
Q ss_pred cccccccccEEEEEeecCCCCCChHHHHHHHHHHHh------cCCCEEEEeecCCCCc-HHH--HHHHHhhhhhcCCcee
Q 020346 70 LDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES------TGIPLTLALNKVELVD-EEV--LNTWKSRLHTWGYEPL 140 (327)
Q Consensus 70 ~r~~~anvD~lliv~~~~~p~~~~~~l~r~L~~a~~------~~~~~~ivlnK~Dl~~-~~~--~~~~~~~~~~~~~~~~ 140 (327)
....+.++|.+++|+++..+. +...+..++..... .+.|+++|.||+|+.+ ... ..........++++.+
T Consensus 90 ~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~ 168 (208)
T 2yc2_C 90 ISQYWNGVYYAILVFDVSSME-SFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFF 168 (208)
T ss_dssp HSTTCCCCCEEEEEEETTCHH-HHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHHTTCEEE
T ss_pred HHHHHhhCcEEEEEEECCCHH-HHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHHcCCEEE
Confidence 344578999999999987653 33455566555443 4789999999999976 221 1222233445677888
Q ss_pred eccCcc-hhhHHHHHh
Q 020346 141 FCSVES-KLGLDSLLQ 155 (327)
Q Consensus 141 ~~s~~~-~~~l~~l~~ 155 (327)
.+|+.+ ..+++++-.
T Consensus 169 ~~Sa~~~~~gi~~l~~ 184 (208)
T 2yc2_C 169 DVSANPPGKDADAPFL 184 (208)
T ss_dssp ECCC-------CHHHH
T ss_pred EeccCCCCcCHHHHHH
Confidence 889887 766655543
|
| >3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A* | Back alignment and structure |
|---|
Probab=96.49 E-value=0.004 Score=51.00 Aligned_cols=83 Identities=17% Similarity=0.199 Sum_probs=54.7
Q ss_pred ccccccEEEEEeecCCCCCChHHHHHHHHHHHh----cCCCEEEEeecCCCCcHHH--HHHHHhhhhhcCCceeeccCcc
Q 020346 73 PVANVDHLLLLFSMDQPKLEPFALTRFLVEAES----TGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLFCSVES 146 (327)
Q Consensus 73 ~~anvD~lliv~~~~~p~~~~~~l~r~L~~a~~----~~~~~~ivlnK~Dl~~~~~--~~~~~~~~~~~~~~~~~~s~~~ 146 (327)
...++|.+++|+++..|. +...+..++..... .+.|+++|.||+|+.+... ..........++++.+.+|+.+
T Consensus 72 ~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 150 (169)
T 3q85_A 72 CLQTGDAFLIVFSVTDRR-SFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAAL 150 (169)
T ss_dssp HHHHCSEEEEEEETTCHH-HHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTT
T ss_pred hhccCCEEEEEEECCChH-HHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHHHcCCcEEEecCcc
Confidence 357899999999997642 33345555544433 2789999999999974321 1122233345677889999988
Q ss_pred hhhHHHHHhh
Q 020346 147 KLGLDSLLQR 156 (327)
Q Consensus 147 ~~~l~~l~~~ 156 (327)
..+++++-..
T Consensus 151 ~~~v~~l~~~ 160 (169)
T 3q85_A 151 HHNTRELFEG 160 (169)
T ss_dssp TBSHHHHHHH
T ss_pred CCCHHHHHHH
Confidence 8777766443
|
| >2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* | Back alignment and structure |
|---|
Probab=96.48 E-value=0.0014 Score=62.68 Aligned_cols=35 Identities=29% Similarity=0.429 Sum_probs=29.3
Q ss_pred hhhHHHHHhhc-CCCE--EEEEcCCCCCHHHHHHHHcC
Q 020346 147 KLGLDSLLQRL-RDQT--TVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 147 ~~~l~~l~~~l-~g~~--v~lvG~sG~GKSTLln~L~g 181 (327)
..+++.+++.+ +|+. ++|+|++|+||||+.++|++
T Consensus 9 ~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 9 DDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp HHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHH
Confidence 34677777776 6766 99999999999999999887
|
| >3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A* | Back alignment and structure |
|---|
Probab=96.47 E-value=0.00084 Score=60.47 Aligned_cols=23 Identities=35% Similarity=0.570 Sum_probs=20.9
Q ss_pred CCEEEEEcCCCCCHHHHHHHHcC
Q 020346 159 DQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 159 g~~v~lvG~sG~GKSTLln~L~g 181 (327)
..+++|.|||||||||+.+.|..
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999984
|
| >1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A | Back alignment and structure |
|---|
Probab=96.47 E-value=0.0014 Score=57.25 Aligned_cols=23 Identities=30% Similarity=0.460 Sum_probs=21.0
Q ss_pred CCEEEEEcCCCCCHHHHHHHHcC
Q 020346 159 DQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 159 g~~v~lvG~sG~GKSTLln~L~g 181 (327)
+.+++|.|++||||||+.+.|..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999975
|
| >1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* | Back alignment and structure |
|---|
Probab=96.46 E-value=0.0033 Score=51.21 Aligned_cols=84 Identities=20% Similarity=0.265 Sum_probs=53.0
Q ss_pred cccccccEEEEEeecCCCCCChHHHHHHHHHHH----hcCCCEEEEeecCCCCcHHH--HHHHHhhhhhc-CCceeeccC
Q 020346 72 PPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE----STGIPLTLALNKVELVDEEV--LNTWKSRLHTW-GYEPLFCSV 144 (327)
Q Consensus 72 ~~~anvD~lliv~~~~~p~~~~~~l~r~L~~a~----~~~~~~~ivlnK~Dl~~~~~--~~~~~~~~~~~-~~~~~~~s~ 144 (327)
....++|.+++|+++..|. +...+..++.... ..+.|+++|+||+|+.++.. .+........+ +++.+.+|+
T Consensus 70 ~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 148 (167)
T 1c1y_A 70 LYMKNGQGFALVYSITAQS-TFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSA 148 (167)
T ss_dssp HHHHHCSEEEEEEETTCHH-HHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBT
T ss_pred HHhccCCEEEEEEECCCHH-HHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHHHccCCcEEEecC
Confidence 3467899999999987642 2223333332222 34789999999999975421 11122223334 577888999
Q ss_pred cchhhHHHHHhh
Q 020346 145 ESKLGLDSLLQR 156 (327)
Q Consensus 145 ~~~~~l~~l~~~ 156 (327)
.++.+++.+-..
T Consensus 149 ~~~~gi~~l~~~ 160 (167)
T 1c1y_A 149 KSKINVNEIFYD 160 (167)
T ss_dssp TTTBSHHHHHHH
T ss_pred CCCCCHHHHHHH
Confidence 888887776544
|
| >3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A* | Back alignment and structure |
|---|
Probab=96.46 E-value=0.0013 Score=57.47 Aligned_cols=24 Identities=38% Similarity=0.754 Sum_probs=20.7
Q ss_pred cCCCEEEEEcCCCCCHHHHHHHHc
Q 020346 157 LRDQTTVIVGPSGVGKSSLINALR 180 (327)
Q Consensus 157 l~g~~v~lvG~sG~GKSTLln~L~ 180 (327)
+.....+|+|+||+||||++.+|.
T Consensus 21 f~~~~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 21 FKEGINLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHH
T ss_pred eCCCeEEEEcCCCCCHHHHHHHHH
Confidence 345689999999999999999874
|
| >1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* | Back alignment and structure |
|---|
Probab=96.46 E-value=0.0069 Score=51.06 Aligned_cols=84 Identities=17% Similarity=0.080 Sum_probs=53.6
Q ss_pred cccccccEEEEEeecCCCCCChHHHHHHHHHHHh----cCCCEEEEeecCCCCcHHHHHHHHhhh-----hhcCCceeec
Q 020346 72 PPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES----TGIPLTLALNKVELVDEEVLNTWKSRL-----HTWGYEPLFC 142 (327)
Q Consensus 72 ~~~anvD~lliv~~~~~p~~~~~~l~r~L~~a~~----~~~~~~ivlnK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~ 142 (327)
..+.++|.+++|+++..+. +...+..++..... .+.|+++|+||+|+.+......+...+ ...++..+.+
T Consensus 86 ~~~~~~d~ii~v~D~~~~~-s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (188)
T 1zd9_A 86 RYCRGVSAIVYMVDAADQE-KIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSI 164 (188)
T ss_dssp HHHTTCSEEEEEEETTCGG-GHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEEC
T ss_pred HHHccCCEEEEEEECCCHH-HHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCCCHHHHHHHhChhhhccCCeeEEEE
Confidence 3468999999999987642 34445555544432 578999999999997542112222221 1234567888
Q ss_pred cCcchhhHHHHHhh
Q 020346 143 SVESKLGLDSLLQR 156 (327)
Q Consensus 143 s~~~~~~l~~l~~~ 156 (327)
|+.+..+++++-..
T Consensus 165 SA~~g~gv~~l~~~ 178 (188)
T 1zd9_A 165 SCKEKDNIDITLQW 178 (188)
T ss_dssp CTTTCTTHHHHHHH
T ss_pred ECCCCCCHHHHHHH
Confidence 88887777776544
|
| >1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.42 E-value=0.0014 Score=55.28 Aligned_cols=23 Identities=17% Similarity=0.348 Sum_probs=20.7
Q ss_pred CCEEEEEcCCCCCHHHHHHHHcC
Q 020346 159 DQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 159 g~~v~lvG~sG~GKSTLln~L~g 181 (327)
+..++|+|++||||||+.+.|..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 56799999999999999999864
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=96.41 E-value=0.00092 Score=65.59 Aligned_cols=38 Identities=16% Similarity=0.162 Sum_probs=31.5
Q ss_pred CCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeeccee
Q 020346 159 DQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQR 208 (327)
Q Consensus 159 g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~ 208 (327)
+.+++++|++||||||++..|+. ++.+..++|.+-+.+
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~------------~l~~~G~kVllv~~D 134 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAY------------FYKKRGYKVGLVAAD 134 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHH------------HHHHTTCCEEEEEEC
T ss_pred CeEEEEECCCCCCHHHHHHHHHH------------HHHHcCCeEEEEecC
Confidence 67899999999999999999998 667777777665544
|
| >4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A* | Back alignment and structure |
|---|
Probab=96.41 E-value=0.0026 Score=56.22 Aligned_cols=54 Identities=28% Similarity=0.261 Sum_probs=0.0
Q ss_pred EEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcceeeEEEEEEEccC---CCeE
Q 020346 161 TTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSG---GGYL 237 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~tt~~i~~v~q~~---~~~i 237 (327)
.++|||.+|||||||++.+.. +.-.....+..+ .....-.+..+. ...+
T Consensus 15 KivlvGd~~VGKTsLi~r~~~------------------------~~f~~~~~~Tig----~d~~~k~~~~~~~~v~l~i 66 (216)
T 4dkx_A 15 KLVFLGEQSVGKTSLITRFMY------------------------DSFDNTYQATIG----IDFLSKTMYLEDRTIRLQL 66 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH------------------------SCCC--------------CEEEEEECSSCEEEEEE
T ss_pred EEEEECcCCcCHHHHHHHHHh------------------------CCCCCCcCCccc----eEEEEEEEEecceEEEEEE
Q ss_pred EeCcc
Q 020346 238 ADTPG 242 (327)
Q Consensus 238 ~Dtpg 242 (327)
+||+|
T Consensus 67 wDtaG 71 (216)
T 4dkx_A 67 WDTAG 71 (216)
T ss_dssp ECCSC
T ss_pred EECCC
|
| >1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* | Back alignment and structure |
|---|
Probab=96.41 E-value=0.0081 Score=49.53 Aligned_cols=85 Identities=9% Similarity=0.110 Sum_probs=51.4
Q ss_pred ccccccccEEEEEeecCCCCCChHHHHHHHHHHHh-------cCCCEEEEeecCCCCcHHH---HHHHHhhhh-hcCCce
Q 020346 71 DPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES-------TGIPLTLALNKVELVDEEV---LNTWKSRLH-TWGYEP 139 (327)
Q Consensus 71 r~~~anvD~lliv~~~~~p~~~~~~l~r~L~~a~~-------~~~~~~ivlnK~Dl~~~~~---~~~~~~~~~-~~~~~~ 139 (327)
...+.++|.+++|+++..+. +...+..++..... .+.|+++|+||+|+.+... ......... ..+.+.
T Consensus 76 ~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~ 154 (182)
T 1ky3_A 76 VAFYRGADCCVLVYDVTNAS-SFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPL 154 (182)
T ss_dssp -CCSTTCCEEEEEEETTCHH-HHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCE
T ss_pred HHHhhcCCEEEEEEECCChH-HHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHhcCCCeE
Confidence 34567999999999987642 33334444433321 5779999999999964321 111111111 234577
Q ss_pred eeccCcchhhHHHHHhh
Q 020346 140 LFCSVESKLGLDSLLQR 156 (327)
Q Consensus 140 ~~~s~~~~~~l~~l~~~ 156 (327)
+.+|+.+..+++.+-..
T Consensus 155 ~~~Sa~~~~gi~~l~~~ 171 (182)
T 1ky3_A 155 FLTSAKNAINVDTAFEE 171 (182)
T ss_dssp EEEBTTTTBSHHHHHHH
T ss_pred EEEecCCCCCHHHHHHH
Confidence 88888877777766443
|
| >2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.41 E-value=0.0033 Score=53.06 Aligned_cols=87 Identities=17% Similarity=0.117 Sum_probs=56.2
Q ss_pred ccccccccccEEEEEeecCCCCCChHHHHHHHHHHHh---cCCCEEEEeecCCCCcHHH--HHHHHhhhhhcCCceeecc
Q 020346 69 ILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES---TGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLFCS 143 (327)
Q Consensus 69 l~r~~~anvD~lliv~~~~~p~~~~~~l~r~L~~a~~---~~~~~~ivlnK~Dl~~~~~--~~~~~~~~~~~~~~~~~~s 143 (327)
+.+..+.++|.+++|+++..+. +...+..++..... .+.|+++|+||+|+.+... ...........++..+.+|
T Consensus 90 ~~~~~~~~~d~vi~v~D~~~~~-s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 168 (193)
T 2oil_A 90 ITSAYYRGAVGALLVFDLTKHQ-TYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETS 168 (193)
T ss_dssp THHHHHTTCCEEEEEEETTCHH-HHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEC
T ss_pred hhHHHhccCCEEEEEEECCCHH-HHHHHHHHHHHHHHhcCCCCeEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEe
Confidence 3334578999999999987642 33345555544443 3678999999999975321 1122223344677888899
Q ss_pred CcchhhHHHHHhh
Q 020346 144 VESKLGLDSLLQR 156 (327)
Q Consensus 144 ~~~~~~l~~l~~~ 156 (327)
+.+..+++.+-..
T Consensus 169 a~~~~gi~~l~~~ 181 (193)
T 2oil_A 169 ALDSTNVELAFET 181 (193)
T ss_dssp TTTCTTHHHHHHH
T ss_pred CCCCCCHHHHHHH
Confidence 8887777766443
|
| >3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=96.40 E-value=0.0008 Score=67.59 Aligned_cols=22 Identities=27% Similarity=0.385 Sum_probs=20.3
Q ss_pred CEEEEEcCCCCCHHHHHHHHcC
Q 020346 160 QTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 160 ~~v~lvG~sG~GKSTLln~L~g 181 (327)
.+++|+|++|||||||+|.|++
T Consensus 14 r~IaIiG~~~aGKTTL~~~Ll~ 35 (528)
T 3tr5_A 14 RTFAIISHPDAGKTTLTEKLLL 35 (528)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHHh
Confidence 5799999999999999999974
|
| >1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=96.40 E-value=0.0014 Score=55.13 Aligned_cols=21 Identities=43% Similarity=0.593 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHcC
Q 020346 161 TTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g 181 (327)
.++|+|+|||||||+.+.|..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 589999999999999999976
|
| >3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.40 E-value=0.0042 Score=54.12 Aligned_cols=88 Identities=13% Similarity=0.069 Sum_probs=54.0
Q ss_pred cccccccccccEEEEEeecCCCCCChHHHHHHHHHHHh---cCCCEEEEeecCCCCcHHH--HHHHHhhhhhcCCceeec
Q 020346 68 EILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES---TGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLFC 142 (327)
Q Consensus 68 ~l~r~~~anvD~lliv~~~~~p~~~~~~l~r~L~~a~~---~~~~~~ivlnK~Dl~~~~~--~~~~~~~~~~~~~~~~~~ 142 (327)
.+....+.++|.+++|+++..+. +...+..++..... .+.|+++|+||+|+.+... ...........++..+.+
T Consensus 77 ~~~~~~~~~~d~vilV~D~~~~~-s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~ 155 (223)
T 3cpj_B 77 AITSAYYRGAVGALIVYDISKSS-SYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTET 155 (223)
T ss_dssp CCCGGGTTTCCEEEEEEC-CCHH-HHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGGCCSCHHHHHHHHHHTTCEEEEC
T ss_pred hhHHHHhccCCEEEEEEeCCCHH-HHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCEEEEE
Confidence 34445678999999999987642 33445555554443 3678999999999975321 111222334456788888
Q ss_pred cCcchhhHHHHHhh
Q 020346 143 SVESKLGLDSLLQR 156 (327)
Q Consensus 143 s~~~~~~l~~l~~~ 156 (327)
|+.+..+++.+-..
T Consensus 156 Sa~~~~gi~~l~~~ 169 (223)
T 3cpj_B 156 SALNSENVDKAFEE 169 (223)
T ss_dssp CCC-CCCHHHHHHH
T ss_pred eCCCCCCHHHHHHH
Confidence 88877777665443
|
| >1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.39 E-value=0.0035 Score=51.07 Aligned_cols=87 Identities=13% Similarity=0.168 Sum_probs=55.4
Q ss_pred cccccccccEEEEEeecCCCCCChHHHHHHHHHHHh---cCCCEEEEeecCCCCcHH---H--HHHHHhhhhhcCCceee
Q 020346 70 LDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES---TGIPLTLALNKVELVDEE---V--LNTWKSRLHTWGYEPLF 141 (327)
Q Consensus 70 ~r~~~anvD~lliv~~~~~p~~~~~~l~r~L~~a~~---~~~~~~ivlnK~Dl~~~~---~--~~~~~~~~~~~~~~~~~ 141 (327)
.+..+.++|.+++|+++..|. +...+..++..... .+.|+++|+||+|+.++. . ...........+++.+.
T Consensus 69 ~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~ 147 (170)
T 1ek0_A 69 APXYYRNAQAALVVYDVTKPQ-SFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFE 147 (170)
T ss_dssp HHHHHTTCSEEEEEEETTCHH-HHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEE
T ss_pred hhhhhccCcEEEEEEecCChH-HHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcCCEEEE
Confidence 334568999999999987642 33344545443332 367889999999997541 1 11112223345678888
Q ss_pred ccCcchhhHHHHHhhc
Q 020346 142 CSVESKLGLDSLLQRL 157 (327)
Q Consensus 142 ~s~~~~~~l~~l~~~l 157 (327)
+|+.+..+++++-..+
T Consensus 148 ~Sa~~~~gi~~l~~~l 163 (170)
T 1ek0_A 148 TSAKTGENVNDVFLGI 163 (170)
T ss_dssp CCTTTCTTHHHHHHHH
T ss_pred EeCCCCCCHHHHHHHH
Confidence 9988888777765543
|
| >2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=96.38 E-value=0.0021 Score=61.61 Aligned_cols=46 Identities=20% Similarity=0.406 Sum_probs=0.0
Q ss_pred EEEEEcCCCCCHHHHHHHHc--CCCCCCCcccccccccccccceeecceeeccccccCCCcceeeEEEEEEEccCCC---
Q 020346 161 TTVIVGPSGVGKSSLINALR--SSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGG--- 235 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~--g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~tt~~i~~v~q~~~~--- 235 (327)
.++++|.+++|||||+|.|+ | .|..+++.....+.
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~~~g----------------------------------------iTi~~~~~~~~~~~~~i 62 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLGKKG----------------------------------------TSSDITMYNNDKEGRNM 62 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTSEEE----------------------------------------EESSSEEEEECSSSSEE
T ss_pred EEEEECCCCCCHHHHHHHHHhCC----------------------------------------EEEEeeEEEEecCCeEE
Q ss_pred eEEeCcccCCc
Q 020346 236 YLADTPGFNQP 246 (327)
Q Consensus 236 ~i~Dtpg~~~~ 246 (327)
.++||||...+
T Consensus 63 ~iiDtPGh~~f 73 (370)
T 2elf_A 63 VFVDAHSYPKT 73 (370)
T ss_dssp EEEECTTTTTC
T ss_pred EEEECCChHHH
|
| >1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.38 E-value=0.0017 Score=55.49 Aligned_cols=23 Identities=39% Similarity=0.440 Sum_probs=21.1
Q ss_pred CCEEEEEcCCCCCHHHHHHHHcC
Q 020346 159 DQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 159 g~~v~lvG~sG~GKSTLln~L~g 181 (327)
..+++|+|++||||||+.+.|..
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999987
|
| >1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.37 E-value=0.0018 Score=57.42 Aligned_cols=25 Identities=24% Similarity=0.477 Sum_probs=22.9
Q ss_pred cCCCEEEEEcCCCCCHHHHHHHHcC
Q 020346 157 LRDQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 157 l~g~~v~lvG~sG~GKSTLln~L~g 181 (327)
-++.+++|+|++||||||+.+.|.+
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3688999999999999999999986
|
| >2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... | Back alignment and structure |
|---|
Probab=96.36 E-value=0.0038 Score=50.46 Aligned_cols=85 Identities=15% Similarity=0.273 Sum_probs=54.0
Q ss_pred ccccccccEEEEEeecCCCCCChHHHHHHHHHHHh----cCCCEEEEeecCCCCcHHH-HHHHHhhhhhcCCceeeccCc
Q 020346 71 DPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES----TGIPLTLALNKVELVDEEV-LNTWKSRLHTWGYEPLFCSVE 145 (327)
Q Consensus 71 r~~~anvD~lliv~~~~~p~~~~~~l~r~L~~a~~----~~~~~~ivlnK~Dl~~~~~-~~~~~~~~~~~~~~~~~~s~~ 145 (327)
+..+.++|.+++++++..+. +...+..++..... .+.|+++|+||+|+.+... ..........++++.+.+|..
T Consensus 69 ~~~~~~~~~~i~v~d~~~~~-~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 147 (166)
T 2ce2_X 69 DQYMRTGEGFLCVFAINNTK-SFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAARTVESRQAQDLARSYGIPYIETSAK 147 (166)
T ss_dssp HHHHHHCSEEEEEEETTCHH-HHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHHHHTCCEEEECTT
T ss_pred HHhhccCCEEEEEEECCCHH-HHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhhcccCHHHHHHHHHHcCCeEEEecCC
Confidence 33567899999999987542 22334444433322 2789999999999976321 111222234457788889988
Q ss_pred chhhHHHHHhh
Q 020346 146 SKLGLDSLLQR 156 (327)
Q Consensus 146 ~~~~l~~l~~~ 156 (327)
++.+++++...
T Consensus 148 ~~~gi~~l~~~ 158 (166)
T 2ce2_X 148 TRQGVEDAFYT 158 (166)
T ss_dssp TCTTHHHHHHH
T ss_pred CCCCHHHHHHH
Confidence 88777776544
|
| >3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.36 E-value=0.0013 Score=67.27 Aligned_cols=24 Identities=29% Similarity=0.436 Sum_probs=21.8
Q ss_pred CCEEEEEcCCCCCHHHHHHHHcCC
Q 020346 159 DQTTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 159 g~~v~lvG~sG~GKSTLln~L~g~ 182 (327)
.-.++|+|++|+|||||+|.|++.
T Consensus 167 ~lkV~ivG~~n~GKSTLin~Ll~~ 190 (611)
T 3izq_1 167 HLSFVVLGHVDAGKSTLMGRLLYD 190 (611)
T ss_dssp CCEEEEECCSSSCHHHHHHHHHSC
T ss_pred ceEEEEEECCCCCHHHHHHHHHHh
Confidence 458999999999999999999984
|
| >1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B* | Back alignment and structure |
|---|
Probab=96.35 E-value=0.0015 Score=60.30 Aligned_cols=24 Identities=29% Similarity=0.410 Sum_probs=21.6
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcC
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g 181 (327)
.+..+.|+|+|||||||+.+.|..
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999999975
|
| >2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* | Back alignment and structure |
|---|
Probab=96.34 E-value=0.0039 Score=51.51 Aligned_cols=85 Identities=15% Similarity=0.187 Sum_probs=53.1
Q ss_pred ccccccccEEEEEeecCCCCCChHHHHHHHHHHHh-----cCCC-EEEEeecCCCCcHHH--HHHHHhhhhhcCCceeec
Q 020346 71 DPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES-----TGIP-LTLALNKVELVDEEV--LNTWKSRLHTWGYEPLFC 142 (327)
Q Consensus 71 r~~~anvD~lliv~~~~~p~~~~~~l~r~L~~a~~-----~~~~-~~ivlnK~Dl~~~~~--~~~~~~~~~~~~~~~~~~ 142 (327)
+..+.++|.+++|+++..|. +...+..++..... ...| +++|.||+|+.+... .+........++++.+.+
T Consensus 74 ~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (178)
T 2hxs_A 74 DKYIYGAQGVLLVYDITNYQ-SFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFV 152 (178)
T ss_dssp HHHHTTCSEEEEEEETTCHH-HHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEEE
T ss_pred hHHHhhCCEEEEEEECCCHH-HHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHHHcCCcEEEE
Confidence 33568999999999987643 23334444433332 2566 688999999975321 111122234457788889
Q ss_pred cCcchhhHHHHHhh
Q 020346 143 SVESKLGLDSLLQR 156 (327)
Q Consensus 143 s~~~~~~l~~l~~~ 156 (327)
|+.+..+++.+-..
T Consensus 153 Sa~~~~gi~~l~~~ 166 (178)
T 2hxs_A 153 SAKTGDSVFLCFQK 166 (178)
T ss_dssp CTTTCTTHHHHHHH
T ss_pred eCCCCCCHHHHHHH
Confidence 98887777766544
|
| >3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* | Back alignment and structure |
|---|
Probab=96.34 E-value=0.0039 Score=51.93 Aligned_cols=85 Identities=18% Similarity=0.240 Sum_probs=53.7
Q ss_pred ccccccccEEEEEeecCCCCCChHHHHHHHHHH----HhcCCCEEEEeecCCCCcHHH--HHHHHhhhhhcCCceeeccC
Q 020346 71 DPPVANVDHLLLLFSMDQPKLEPFALTRFLVEA----ESTGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLFCSV 144 (327)
Q Consensus 71 r~~~anvD~lliv~~~~~p~~~~~~l~r~L~~a----~~~~~~~~ivlnK~Dl~~~~~--~~~~~~~~~~~~~~~~~~s~ 144 (327)
+..+.++|.+++|+++..+. +...+..++... ...+.|+++|.||+|+.+... ..........++.+.+.+|+
T Consensus 84 ~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa 162 (183)
T 3kkq_A 84 EQYMRTGDGFLIVYSVTDKA-SFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSA 162 (183)
T ss_dssp HHHHHHCSEEEEEEETTCHH-HHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBC
T ss_pred HHHHhcCCEEEEEEECCCHH-HHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHHHhCCeEEEecc
Confidence 34578999999999997642 223344443332 235779999999999965321 11122233445678888898
Q ss_pred c-chhhHHHHHhh
Q 020346 145 E-SKLGLDSLLQR 156 (327)
Q Consensus 145 ~-~~~~l~~l~~~ 156 (327)
. +..+++.+-..
T Consensus 163 ~~~~~~v~~l~~~ 175 (183)
T 3kkq_A 163 KDPPLNVDKTFHD 175 (183)
T ss_dssp SSSCBSHHHHHHH
T ss_pred CCCCCCHHHHHHH
Confidence 8 77777766443
|
| >2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.34 E-value=0.0032 Score=54.03 Aligned_cols=84 Identities=12% Similarity=0.165 Sum_probs=55.0
Q ss_pred cccccccEEEEEeecCCCCCChHHHHHHHHHHHh---cCCCEEEEeecCCCCcHHH--HHHHHhhhhhcCC-ceeeccCc
Q 020346 72 PPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES---TGIPLTLALNKVELVDEEV--LNTWKSRLHTWGY-EPLFCSVE 145 (327)
Q Consensus 72 ~~~anvD~lliv~~~~~p~~~~~~l~r~L~~a~~---~~~~~~ivlnK~Dl~~~~~--~~~~~~~~~~~~~-~~~~~s~~ 145 (327)
..+.++|.+++|+++..+. +...+..++..... .+.|+++|.||+|+.+... .+........+++ ..+.+|+.
T Consensus 97 ~~~~~~d~iilv~D~~~~~-s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~ 175 (201)
T 2hup_A 97 SYYRSANGAILAYDITKRS-SFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAK 175 (201)
T ss_dssp HHHTTCSEEEEEEETTBHH-HHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCSEEEECBTT
T ss_pred HHHhhCCEEEEEEECCCHH-HHHHHHHHHHHHHHhcCCCCCEEEEEECCccccccccCHHHHHHHHHHcCCCEEEEEeCC
Confidence 3568999999999987642 23344555544432 4678999999999975321 1222233345677 78889988
Q ss_pred chhhHHHHHhh
Q 020346 146 SKLGLDSLLQR 156 (327)
Q Consensus 146 ~~~~l~~l~~~ 156 (327)
+..+++++-..
T Consensus 176 ~g~gi~~l~~~ 186 (201)
T 2hup_A 176 DSSNVEEAFLR 186 (201)
T ss_dssp TTBSHHHHHHH
T ss_pred CCCCHHHHHHH
Confidence 87777766544
|
| >3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A* | Back alignment and structure |
|---|
Probab=96.34 E-value=0.00092 Score=66.16 Aligned_cols=58 Identities=24% Similarity=0.315 Sum_probs=0.0
Q ss_pred EEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecc-----------------------------eeecc
Q 020346 161 TTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFED-----------------------------QRVGE 211 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g-----------------------------~~v~~ 211 (327)
.++|+|.+|+|||||+|.|++ . .+-..
T Consensus 35 ki~iiG~~~~GKSTLi~~Ll~------------------------~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~ 90 (483)
T 3p26_A 35 SFVVLGHVDAGKSTLMGRLLY------------------------DLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTN 90 (483)
T ss_dssp EEEEESCGGGTHHHHHHHHHH------------------------HTTSSCHHHHHHHCC--------------------
T ss_pred EEEEECCCCCCHHHHHHHHHH------------------------hcCCccHHHHHHHHHHHHhcCCCcchhhhhhccch
Q ss_pred ccccCCCcceeeEEEEEEEccC---CCeEEeCcccCCc
Q 020346 212 VSTKSGRGKHTTRHVSLLPLSG---GGYLADTPGFNQP 246 (327)
Q Consensus 212 ~s~~~~~g~~tt~~i~~v~q~~---~~~i~Dtpg~~~~ 246 (327)
.....| .|..+.+..... ...++||||...+
T Consensus 91 ~e~~~G----iTi~~~~~~~~~~~~~~~iiDTPG~~~f 124 (483)
T 3p26_A 91 EERERG----VTVSICTSHFSTHRANFTIVDAPGHRDF 124 (483)
T ss_dssp ----CC----SSCCCCEEEEECSSCEEEEECCCCCGGG
T ss_pred hHhhcC----cceEeeeEEEecCCceEEEEECCCcHHH
|
| >3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A* | Back alignment and structure |
|---|
Probab=96.34 E-value=0.0039 Score=52.74 Aligned_cols=89 Identities=18% Similarity=0.195 Sum_probs=55.7
Q ss_pred ccccccccccccEEEEEeecCCCCCChHHH-HHHHHHHH--hcCCCEEEEeecCCCCcHH----HHHHHHhhhhhcCCc-
Q 020346 67 TEILDPPVANVDHLLLLFSMDQPKLEPFAL-TRFLVEAE--STGIPLTLALNKVELVDEE----VLNTWKSRLHTWGYE- 138 (327)
Q Consensus 67 ~~l~r~~~anvD~lliv~~~~~p~~~~~~l-~r~L~~a~--~~~~~~~ivlnK~Dl~~~~----~~~~~~~~~~~~~~~- 138 (327)
..+....+.++|.+++|+++..+. +...+ ..++.... ..+.|+++|.||+|+.++. ...........+++.
T Consensus 85 ~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 163 (194)
T 3reg_A 85 DRLRPLSYADSDVVLLCFAVNNRT-SFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVA 163 (194)
T ss_dssp TTTGGGGCTTCSEEEEEEETTCHH-HHHHHHHTHHHHHHHHCTTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSC
T ss_pred HHHhHhhccCCcEEEEEEECCCHH-HHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCE
Confidence 344445678999999999987642 22233 33333333 2367999999999997531 112222333445666
Q ss_pred eeeccCcchhhHHHHHhh
Q 020346 139 PLFCSVESKLGLDSLLQR 156 (327)
Q Consensus 139 ~~~~s~~~~~~l~~l~~~ 156 (327)
.+.+|+.+..+++++-..
T Consensus 164 ~~~~Sa~~~~gi~~l~~~ 181 (194)
T 3reg_A 164 YIEASSVAKIGLNEVFEK 181 (194)
T ss_dssp EEECBTTTTBSHHHHHHH
T ss_pred EEEeecCCCCCHHHHHHH
Confidence 888999888877776544
|
| >1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A* | Back alignment and structure |
|---|
Probab=96.33 E-value=0.0029 Score=61.05 Aligned_cols=57 Identities=23% Similarity=0.236 Sum_probs=0.0
Q ss_pred EEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcceeeEEEEEEEcc--------
Q 020346 161 TTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLS-------- 232 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~tt~~i~~v~q~-------- 232 (327)
.++++|++|+|||||++.|.| ......+....+|.-...........
T Consensus 12 ~I~iiG~~~~GKSTLi~~L~g-------------------------~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y 66 (410)
T 1kk1_A 12 NIGMVGHVDHGKTTLTKALTG-------------------------VWTDTHSEELRRGITIKIGFADAEIRRCPNCGRY 66 (410)
T ss_dssp EEEEECSTTSSHHHHHHHHHT-------------------------CCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCE
T ss_pred EEEEECCCCCCHHHHHHHHhC-------------------------CccccChhhhcCCcEEEEeeeeeecccccccccc
Q ss_pred ----------------CCCeEEeCcc
Q 020346 233 ----------------GGGYLADTPG 242 (327)
Q Consensus 233 ----------------~~~~i~Dtpg 242 (327)
....++||||
T Consensus 67 ~~~~~~~~~g~~~~~~~~i~iiDtPG 92 (410)
T 1kk1_A 67 STSPVCPYCGHETEFVRRVSFIDAPG 92 (410)
T ss_dssp ESSSBCTTTCCBCEEEEEEEEEECSS
T ss_pred cccccccccCcccccccEEEEEECCC
|
| >4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=96.33 E-value=0.00028 Score=70.43 Aligned_cols=31 Identities=29% Similarity=0.447 Sum_probs=24.5
Q ss_pred HHHHHhhcCCCEEEEEcCCCCCHHHHHHHHc
Q 020346 150 LDSLLQRLRDQTTVIVGPSGVGKSSLINALR 180 (327)
Q Consensus 150 l~~l~~~l~g~~v~lvG~sG~GKSTLln~L~ 180 (327)
++++++.+.....+|+|+||+||||||.+|.
T Consensus 51 ~~~~~l~f~~g~n~i~G~NGaGKS~lleAl~ 81 (517)
T 4ad8_A 51 ITQLELELGGGFCAFTGETGAGKSIIVDALG 81 (517)
T ss_dssp BSCEEEECCCSEEEEEESHHHHHHHHTHHHH
T ss_pred eeeEEEecCCCeEEEEcCCCCCHHHHHHHHH
Confidence 4455556644499999999999999999983
|
| >2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.32 E-value=0.0019 Score=54.92 Aligned_cols=24 Identities=25% Similarity=0.414 Sum_probs=21.9
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcC
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g 181 (327)
.+..++|+|++||||||+.+.|..
T Consensus 11 ~~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp HSCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999999976
|
| >3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* | Back alignment and structure |
|---|
Probab=96.32 E-value=0.0046 Score=53.73 Aligned_cols=89 Identities=16% Similarity=0.123 Sum_probs=55.8
Q ss_pred ccccccccccccEEEEEeecCCCCCChHH-HHHHHHHHHh--cCCCEEEEeecCCCCcHHH--------------HHHHH
Q 020346 67 TEILDPPVANVDHLLLLFSMDQPKLEPFA-LTRFLVEAES--TGIPLTLALNKVELVDEEV--------------LNTWK 129 (327)
Q Consensus 67 ~~l~r~~~anvD~lliv~~~~~p~~~~~~-l~r~L~~a~~--~~~~~~ivlnK~Dl~~~~~--------------~~~~~ 129 (327)
..+.+....++|.+++|+++..+. +... +..++..... .+.|+++|.||+|+.++.. .....
T Consensus 89 ~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~ 167 (214)
T 3q3j_B 89 DNVRPLCYSDSDAVLLCFDISRPE-TVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGC 167 (214)
T ss_dssp TTTGGGGCTTCSEEEEEEETTCTH-HHHHHHTHHHHHHHHHCTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHH
T ss_pred HHHHHHHcCCCeEEEEEEECcCHH-HHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHH
Confidence 334445678999999999998653 2333 3445444433 3779999999999975311 11112
Q ss_pred hhhhhcCC-ceeeccCcchhh-HHHHHhh
Q 020346 130 SRLHTWGY-EPLFCSVESKLG-LDSLLQR 156 (327)
Q Consensus 130 ~~~~~~~~-~~~~~s~~~~~~-l~~l~~~ 156 (327)
.....+++ ..+.+|+.+..+ ++.+-..
T Consensus 168 ~~~~~~~~~~~~e~SA~~g~g~v~~lf~~ 196 (214)
T 3q3j_B 168 AIAKQLGAEIYLEGSAFTSEKSIHSIFRT 196 (214)
T ss_dssp HHHHHHTCSEEEECCTTTCHHHHHHHHHH
T ss_pred HHHHHcCCCEEEEeccCCCcccHHHHHHH
Confidence 22344566 778888887776 7666443
|
| >1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=96.32 E-value=0.0019 Score=64.02 Aligned_cols=34 Identities=29% Similarity=0.393 Sum_probs=28.9
Q ss_pred hhHHHHHhhcCCCEEEEEcCCCCCHHHHHHHHcC
Q 020346 148 LGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 148 ~~l~~l~~~l~g~~v~lvG~sG~GKSTLln~L~g 181 (327)
.+++.+.-..+|++++|+|+||+|||||+|.|.+
T Consensus 140 r~ID~L~pi~kGq~~~i~G~sGvGKTtL~~~l~~ 173 (473)
T 1sky_E 140 KVVDLLAPYIKGGKIGLFGGAGVGKTVLIQELIH 173 (473)
T ss_dssp HHHHHHSCEETTCEEEEECCSSSCHHHHHHHHHH
T ss_pred hHHHHHhhhccCCEEEEECCCCCCccHHHHHHHh
Confidence 3566665556999999999999999999999987
|
| >3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A | Back alignment and structure |
|---|
Probab=96.32 E-value=0.0032 Score=54.65 Aligned_cols=35 Identities=23% Similarity=0.254 Sum_probs=27.3
Q ss_pred hhhHHHHHhhc---CCCEEEEEcCCCCCHHHHHHHHcC
Q 020346 147 KLGLDSLLQRL---RDQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 147 ~~~l~~l~~~l---~g~~v~lvG~sG~GKSTLln~L~g 181 (327)
...++.+.... .+..+.|.||+|+|||||++.+..
T Consensus 37 ~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~ 74 (242)
T 3bos_A 37 DELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACA 74 (242)
T ss_dssp HHHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHH
Confidence 44555554433 578999999999999999999986
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B | Back alignment and structure |
|---|
Probab=96.31 E-value=0.0017 Score=61.19 Aligned_cols=42 Identities=17% Similarity=0.259 Sum_probs=31.0
Q ss_pred hcCccccc------cccccccccccCCceEEcccH------HHHHHHHHHHHHHH
Q 020346 266 MLKANEPA------KCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIR 308 (327)
Q Consensus 266 ~LSgGq~q------~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~ 308 (327)
.|||||+| +++++.++ +.+|.++++|+| .+...+..+++++.
T Consensus 248 ~lS~G~~~~~~la~~l~~a~~l-~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~ 301 (339)
T 3qkt_A 248 FLSGGERIALGLAFRLAMSLYL-AGEISLLILDEPTPYLDEERRRKLITIMERYL 301 (339)
T ss_dssp GSCHHHHHHHHHHHHHHHHHHT-TTTTCEEEEECCCTTCCHHHHHHHHHHHHHTG
T ss_pred HCCHHHHHHHHHHHHHHHHHHh-cCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH
Confidence 39999999 55666676 789999999954 46566666666653
|
| >2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.31 E-value=0.0034 Score=53.26 Aligned_cols=84 Identities=19% Similarity=0.265 Sum_probs=54.5
Q ss_pred cccccccEEEEEeecCCCCCChHHHHHHHHHHHh----cCCCEEEEeecCCCCcHHH--HHHHHhhhhhcCCceeeccCc
Q 020346 72 PPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES----TGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLFCSVE 145 (327)
Q Consensus 72 ~~~anvD~lliv~~~~~p~~~~~~l~r~L~~a~~----~~~~~~ivlnK~Dl~~~~~--~~~~~~~~~~~~~~~~~~s~~ 145 (327)
....++|.+++|+++..+. +...+..++..... .+.|+++|+||+|+.+... ..........++++.+.+|+.
T Consensus 81 ~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 159 (206)
T 2bov_A 81 NYFRSGEGFLCVFSITEME-SFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAK 159 (206)
T ss_dssp HHHHHCSEEEEEEETTCHH-HHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTT
T ss_pred HHHhhCCEEEEEEECCCHH-HHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHHHhCCeEEEEeCC
Confidence 4567899999999987642 33344444433332 3789999999999976421 122223344567788888888
Q ss_pred chhhHHHHHhh
Q 020346 146 SKLGLDSLLQR 156 (327)
Q Consensus 146 ~~~~l~~l~~~ 156 (327)
+..+++++-..
T Consensus 160 ~g~gi~~l~~~ 170 (206)
T 2bov_A 160 TRANVDKVFFD 170 (206)
T ss_dssp TCTTHHHHHHH
T ss_pred CCCCHHHHHHH
Confidence 77777766443
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* | Back alignment and structure |
|---|
Probab=96.30 E-value=0.013 Score=49.70 Aligned_cols=85 Identities=18% Similarity=0.168 Sum_probs=53.7
Q ss_pred ccccccccEEEEEeecCCCCCChHHHHHHHHHHH----hcCCCEEEEeecCCCCcHHHHHHHHhhhh------------h
Q 020346 71 DPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE----STGIPLTLALNKVELVDEEVLNTWKSRLH------------T 134 (327)
Q Consensus 71 r~~~anvD~lliv~~~~~p~~~~~~l~r~L~~a~----~~~~~~~ivlnK~Dl~~~~~~~~~~~~~~------------~ 134 (327)
+....++|.+++|+++..+. +...+..++.... ..+.|+++|.||+|+.+....+.....+. .
T Consensus 85 ~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (190)
T 1m2o_B 85 KDYFPEVNGIVFLVDAADPE-RFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQ 163 (190)
T ss_dssp GGGCTTCCEEEEEEETTCGG-GHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTCSSCCC---CCSS
T ss_pred HHHHhcCCEEEEEEECCChH-HHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcCCCCHHHHHHHhCCcccccccccccc
Confidence 34567999999999997653 3444555554443 25789999999999975211122222221 1
Q ss_pred cCCceeeccCcchhhHHHHHhh
Q 020346 135 WGYEPLFCSVESKLGLDSLLQR 156 (327)
Q Consensus 135 ~~~~~~~~s~~~~~~l~~l~~~ 156 (327)
.+.+.+.+|+.++.+++++-..
T Consensus 164 ~~~~~~~~Sa~~g~gi~~l~~~ 185 (190)
T 1m2o_B 164 RPVEVFMCSVVMRNGYLEAFQW 185 (190)
T ss_dssp CCEEEEECBTTTTBSHHHHHHH
T ss_pred ceEEEEEeECCcCCCHHHHHHH
Confidence 2346778888888877776544
|
| >1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* | Back alignment and structure |
|---|
Probab=96.30 E-value=0.0054 Score=49.66 Aligned_cols=84 Identities=20% Similarity=0.241 Sum_probs=54.0
Q ss_pred cccccccEEEEEeecCCCCCChHHHHHHHHHHH----hcCCCEEEEeecCCCCcHHH--HHHHHhhhhhcCCceeeccCc
Q 020346 72 PPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE----STGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLFCSVE 145 (327)
Q Consensus 72 ~~~anvD~lliv~~~~~p~~~~~~l~r~L~~a~----~~~~~~~ivlnK~Dl~~~~~--~~~~~~~~~~~~~~~~~~s~~ 145 (327)
..+.++|.+++++++..+. +...+..++.... ..+.|+++|+||+|+.++.+ ..........++++.+.+|+.
T Consensus 70 ~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 148 (167)
T 1kao_A 70 LYIKNGQGFILVYSLVNQQ-SFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAK 148 (167)
T ss_dssp HHHHHCSEEEEEEETTCHH-HHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTT
T ss_pred HHhccCCEEEEEEeCCCHH-HHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHHHhCCCEEEecCC
Confidence 3467899999999987642 2233443332222 24789999999999975421 111222334457788999998
Q ss_pred chhhHHHHHhh
Q 020346 146 SKLGLDSLLQR 156 (327)
Q Consensus 146 ~~~~l~~l~~~ 156 (327)
++.+++.+-..
T Consensus 149 ~~~gi~~l~~~ 159 (167)
T 1kao_A 149 SKTMVDELFAE 159 (167)
T ss_dssp CHHHHHHHHHH
T ss_pred CCcCHHHHHHH
Confidence 88887776543
|
| >2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A* | Back alignment and structure |
|---|
Probab=96.29 E-value=0.0019 Score=56.23 Aligned_cols=23 Identities=30% Similarity=0.352 Sum_probs=20.9
Q ss_pred CCEEEEEcCCCCCHHHHHHHHcC
Q 020346 159 DQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 159 g~~v~lvG~sG~GKSTLln~L~g 181 (327)
-..++|+|.+|||||||++.|+.
T Consensus 38 ~~~i~ivG~~gvGKTtl~~~l~~ 60 (226)
T 2hf9_A 38 VVAFDFMGAIGSGKTLLIEKLID 60 (226)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 45799999999999999999987
|
| >1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 | Back alignment and structure |
|---|
Probab=96.29 E-value=0.0021 Score=62.11 Aligned_cols=55 Identities=25% Similarity=0.303 Sum_probs=0.0
Q ss_pred EEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcceeeEEEEEEEcc--------
Q 020346 161 TTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLS-------- 232 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~tt~~i~~v~q~-------- 232 (327)
.++++|..++|||||++.|.| ......+....+| .|..+++....
T Consensus 10 ~I~iiG~~d~GKSTLi~~L~g-------------------------~~~~~~~~e~~~g--iTi~~~~~~~~~~~~~~~~ 62 (408)
T 1s0u_A 10 NIGMVGHVDHGKTSLTKALTG-------------------------VWTDRHSEELRRG--ISIRLGYADCEIRKCPQCG 62 (408)
T ss_dssp EEEEESCTTSSHHHHHHHHHS-------------------------CCCCC-------C--CCCCCEEEEEEEEECTTTC
T ss_pred EEEEEcCCCCCHHHHHHHHhC-------------------------CccccCcccccCC--cEEEecccccccccccccc
Q ss_pred ------------------CCCeEEeCcc
Q 020346 233 ------------------GGGYLADTPG 242 (327)
Q Consensus 233 ------------------~~~~i~Dtpg 242 (327)
....++||||
T Consensus 63 ~y~~~~~~~~~g~~~~~~~~i~iiDtPG 90 (408)
T 1s0u_A 63 TYTTKPRCPNCLAETEFLRRVSFVDSPG 90 (408)
T ss_dssp CEESSSBCTTSCCBCEEEEEEEEEECSS
T ss_pred cccccccccccCcccccccEEEEEECCC
|
| >1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* | Back alignment and structure |
|---|
Probab=96.28 E-value=0.0065 Score=51.64 Aligned_cols=89 Identities=15% Similarity=0.153 Sum_probs=54.3
Q ss_pred cccccccccccEEEEEeecCCCCCChHHHHHHHHHHHh-------cCCCEEEEeecCCCCcHHH-HHHHHhhhh-hcCCc
Q 020346 68 EILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES-------TGIPLTLALNKVELVDEEV-LNTWKSRLH-TWGYE 138 (327)
Q Consensus 68 ~l~r~~~anvD~lliv~~~~~p~~~~~~l~r~L~~a~~-------~~~~~~ivlnK~Dl~~~~~-~~~~~~~~~-~~~~~ 138 (327)
.+....+.++|.+++|+++..+. +...+..++..... .+.|+++|+||+|+.+... ......... ..+++
T Consensus 72 ~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 150 (207)
T 1vg8_A 72 SLGVAFYRGADCCVLVFDVTAPN-TFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIP 150 (207)
T ss_dssp CSCCGGGTTCSEEEEEEETTCHH-HHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHHHTTSCC
T ss_pred HhHHHHHhCCcEEEEEEECCCHH-HHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcccccCHHHHHHHHHhcCCce
Confidence 33444578999999999987642 22334444333221 4679999999999974321 111112222 34567
Q ss_pred eeeccCcchhhHHHHHhhc
Q 020346 139 PLFCSVESKLGLDSLLQRL 157 (327)
Q Consensus 139 ~~~~s~~~~~~l~~l~~~l 157 (327)
.+.+|+.++.+++.+-..+
T Consensus 151 ~~~~Sa~~g~gi~~l~~~l 169 (207)
T 1vg8_A 151 YFETSAKEAINVEQAFQTI 169 (207)
T ss_dssp EEECBTTTTBSHHHHHHHH
T ss_pred EEEEeCCCCCCHHHHHHHH
Confidence 8888888877777665543
|
| >1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... | Back alignment and structure |
|---|
Probab=96.28 E-value=0.0036 Score=52.05 Aligned_cols=87 Identities=20% Similarity=0.256 Sum_probs=52.1
Q ss_pred cccccccccccEEEEEeecCCCCCChHHHH-HHHHHHHh--cCCCEEEEeecCCCCcHHHHHH--------------HHh
Q 020346 68 EILDPPVANVDHLLLLFSMDQPKLEPFALT-RFLVEAES--TGIPLTLALNKVELVDEEVLNT--------------WKS 130 (327)
Q Consensus 68 ~l~r~~~anvD~lliv~~~~~p~~~~~~l~-r~L~~a~~--~~~~~~ivlnK~Dl~~~~~~~~--------------~~~ 130 (327)
.+.+..+.++|.+++|+++..+. +...+. .++..... .+.|+++|.||+|+.+...... ...
T Consensus 68 ~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~ 146 (186)
T 1mh1_A 68 RLRPLSYPQTDVSLICFSLVSPA-SFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLA 146 (186)
T ss_dssp TTGGGGCTTCSEEEEEEETTCHH-HHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHH
T ss_pred HHHHHhccCCcEEEEEEECCChh-hHHHHHHHHHHHHHHhCCCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHH
Confidence 33444678999999999987642 233333 33333332 2789999999999975432111 111
Q ss_pred hhhhcCC-ceeeccCcchhhHHHHHh
Q 020346 131 RLHTWGY-EPLFCSVESKLGLDSLLQ 155 (327)
Q Consensus 131 ~~~~~~~-~~~~~s~~~~~~l~~l~~ 155 (327)
....+++ +.+.+|+.+..+++.+-.
T Consensus 147 ~~~~~~~~~~~~~Sa~~g~gi~~l~~ 172 (186)
T 1mh1_A 147 MAKEIGAVKYLECSALTQRGLKTVFD 172 (186)
T ss_dssp HHHHTTCSEEEECCTTTCTTHHHHHH
T ss_pred HHHhcCCcEEEEecCCCccCHHHHHH
Confidence 2233455 677777777666666543
|
| >2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=96.27 E-value=0.0016 Score=54.80 Aligned_cols=24 Identities=38% Similarity=0.556 Sum_probs=17.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcC
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g 181 (327)
++..+.|.|++||||||+.+.|..
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999999974
|
| >3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus} | Back alignment and structure |
|---|
Probab=96.26 E-value=0.002 Score=55.90 Aligned_cols=21 Identities=24% Similarity=0.472 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHcC
Q 020346 161 TTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g 181 (327)
.++|.|++||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999954
|
| >1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A* | Back alignment and structure |
|---|
Probab=96.26 E-value=0.0022 Score=56.45 Aligned_cols=24 Identities=29% Similarity=0.522 Sum_probs=21.2
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcC
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g 181 (327)
++..++|+|++||||||+.+.|..
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999974
|
| >1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=96.26 E-value=0.0039 Score=51.68 Aligned_cols=36 Identities=25% Similarity=0.518 Sum_probs=27.1
Q ss_pred chhhHHHHHhhc---CCCEEEEEcCCCCCHHHHHHHHcC
Q 020346 146 SKLGLDSLLQRL---RDQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 146 ~~~~l~~l~~~l---~g~~v~lvG~sG~GKSTLln~L~g 181 (327)
....++.+...+ .+..+.|.|++|+|||||++.+..
T Consensus 27 ~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~ 65 (195)
T 1jbk_A 27 RDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQ 65 (195)
T ss_dssp CHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHH
T ss_pred chHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHH
Confidence 344555554444 346789999999999999999987
|
| >1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A* | Back alignment and structure |
|---|
Probab=96.26 E-value=0.0023 Score=55.93 Aligned_cols=24 Identities=29% Similarity=0.592 Sum_probs=21.6
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcC
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g 181 (327)
++..++|+|++||||||+.+.|..
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999999975
|
| >4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=96.25 E-value=0.0056 Score=52.77 Aligned_cols=85 Identities=15% Similarity=0.208 Sum_probs=53.5
Q ss_pred ccccccccEEEEEeecCCCCCChHHHHHHHHHHH---hcCCCEEEEeecCCCCcHHHH--HHHHhhhhhcCCceeeccCc
Q 020346 71 DPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE---STGIPLTLALNKVELVDEEVL--NTWKSRLHTWGYEPLFCSVE 145 (327)
Q Consensus 71 r~~~anvD~lliv~~~~~p~~~~~~l~r~L~~a~---~~~~~~~ivlnK~Dl~~~~~~--~~~~~~~~~~~~~~~~~s~~ 145 (327)
.....++|.+++|+++..+. +...+..++.... ..+.|+++|+||+|+.+.... ..........+++.+.+|+.
T Consensus 79 ~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 157 (218)
T 4djt_A 79 DVYYIGASGAILFFDVTSRI-TCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAK 157 (218)
T ss_dssp HHHHTTCSEEEEEEETTCHH-HHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC----CCHHHHHHHTTTCCCEEEEEBTT
T ss_pred HHHhhcCCEEEEEEeCCCHH-HHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCcEEEEecC
Confidence 33567899999999987642 2333444443333 346899999999999765321 11223344567788889988
Q ss_pred chhhHHHHHhh
Q 020346 146 SKLGLDSLLQR 156 (327)
Q Consensus 146 ~~~~l~~l~~~ 156 (327)
+..+++.+-..
T Consensus 158 ~g~gv~~l~~~ 168 (218)
T 4djt_A 158 TAHNFGLPFLH 168 (218)
T ss_dssp TTBTTTHHHHH
T ss_pred CCCCHHHHHHH
Confidence 87777766444
|
| >2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* | Back alignment and structure |
|---|
Probab=96.25 E-value=0.0055 Score=51.06 Aligned_cols=86 Identities=17% Similarity=0.108 Sum_probs=55.2
Q ss_pred cccccccccEEEEEeecCCCCCChHHHHHHHHHHH---hcCCCEEEEeecCCCCcHHH--HHHHHhhhhhcCCceeeccC
Q 020346 70 LDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE---STGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLFCSV 144 (327)
Q Consensus 70 ~r~~~anvD~lliv~~~~~p~~~~~~l~r~L~~a~---~~~~~~~ivlnK~Dl~~~~~--~~~~~~~~~~~~~~~~~~s~ 144 (327)
.+..+.++|.+++|+++..+. +...+..++.... ..+.|+++|.||+|+.++.. ...........+++.+.+|+
T Consensus 76 ~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 154 (186)
T 2bme_A 76 TRSYYRGAAGALLVYDITSRE-TYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSA 154 (186)
T ss_dssp HHTTSTTCSEEEEEEETTCHH-HHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCT
T ss_pred HHHHHhcCCEEEEEEECcCHH-HHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEecC
Confidence 344678999999999987642 3334444443332 35778999999999965321 11222333456778888898
Q ss_pred cchhhHHHHHhh
Q 020346 145 ESKLGLDSLLQR 156 (327)
Q Consensus 145 ~~~~~l~~l~~~ 156 (327)
.+..+++.+-..
T Consensus 155 ~~~~gi~~l~~~ 166 (186)
T 2bme_A 155 LTGENVEEAFVQ 166 (186)
T ss_dssp TTCTTHHHHHHH
T ss_pred CCCCCHHHHHHH
Confidence 877777665443
|
| >4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* | Back alignment and structure |
|---|
Probab=96.25 E-value=0.0042 Score=51.75 Aligned_cols=85 Identities=18% Similarity=0.278 Sum_probs=53.6
Q ss_pred ccccccccEEEEEeecCCCCCChHHHHHHHHHHH----hcCCCEEEEeecCCCCcHHHH-HHHHhhhhhcCCceeeccCc
Q 020346 71 DPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE----STGIPLTLALNKVELVDEEVL-NTWKSRLHTWGYEPLFCSVE 145 (327)
Q Consensus 71 r~~~anvD~lliv~~~~~p~~~~~~l~r~L~~a~----~~~~~~~ivlnK~Dl~~~~~~-~~~~~~~~~~~~~~~~~s~~ 145 (327)
+..+.++|.+++|+++..+. +...+..++.... ..+.|+++|+||+|+.+.... .........++++.+.+|+.
T Consensus 70 ~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 148 (189)
T 4dsu_A 70 DQYMRTGEGFLCVFAINNTK-SFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLARSYGIPFIETSAK 148 (189)
T ss_dssp HHHHHHCSEEEEEEETTCHH-HHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSSCSSCHHHHHHHHHHHTCCEEECCTT
T ss_pred HHHHhcCCEEEEEEECCCHH-HHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcccccCHHHHHHHHHHcCCeEEEEeCC
Confidence 34567899999999987642 2233444433332 247899999999999753211 11122233456788888988
Q ss_pred chhhHHHHHhh
Q 020346 146 SKLGLDSLLQR 156 (327)
Q Consensus 146 ~~~~l~~l~~~ 156 (327)
++.+++++-..
T Consensus 149 ~g~gi~~l~~~ 159 (189)
T 4dsu_A 149 TRQGVDDAFYT 159 (189)
T ss_dssp TCTTHHHHHHH
T ss_pred CCCCHHHHHHH
Confidence 87777765443
|
| >3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=96.25 E-value=0.0059 Score=51.09 Aligned_cols=84 Identities=6% Similarity=0.030 Sum_probs=54.7
Q ss_pred cccccccEEEEEeecCCCCCChHHHHHHHHHHHh-cCCCEEEEeecCCCCcHH-HHHHHHhhhhhcCCceeeccCcchhh
Q 020346 72 PPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES-TGIPLTLALNKVELVDEE-VLNTWKSRLHTWGYEPLFCSVESKLG 149 (327)
Q Consensus 72 ~~~anvD~lliv~~~~~p~~~~~~l~r~L~~a~~-~~~~~~ivlnK~Dl~~~~-~~~~~~~~~~~~~~~~~~~s~~~~~~ 149 (327)
..+.++|.+++|+++..|. +...+..++..... .+.|+++|+||+|+.+.. ............+++.+.+|+.+..+
T Consensus 112 ~~~~~~d~~i~v~D~~~~~-s~~~~~~~~~~i~~~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 190 (208)
T 3clv_A 112 LYYRGATCAIVVFDISNSN-TLDRAKTWVNQLKISSNYIIILVANKIDKNKFQVDILEVQKYAQDNNLLFIQTSAKTGTN 190 (208)
T ss_dssp HHHTTCSEEEEEEETTCHH-HHHHHHHHHHHHHHHSCCEEEEEEECTTCC-CCSCHHHHHHHHHHTTCEEEEECTTTCTT
T ss_pred HHhcCCCEEEEEEECCCHH-HHHHHHHHHHHHHhhCCCcEEEEEECCCcccccCCHHHHHHHHHHcCCcEEEEecCCCCC
Confidence 3467999999999987652 33345555544443 568999999999942211 12223334455677888899988777
Q ss_pred HHHHHhh
Q 020346 150 LDSLLQR 156 (327)
Q Consensus 150 l~~l~~~ 156 (327)
++.+-..
T Consensus 191 i~~l~~~ 197 (208)
T 3clv_A 191 IKNIFYM 197 (208)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7766443
|
| >3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.24 E-value=0.0062 Score=51.42 Aligned_cols=84 Identities=12% Similarity=0.216 Sum_probs=54.9
Q ss_pred cccccccEEEEEeecCCCCCChHHHHHHHHHHHh---cCCCEEEEeecCCCCcHHH--HHHHHhhhhhcCCceeeccCcc
Q 020346 72 PPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES---TGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLFCSVES 146 (327)
Q Consensus 72 ~~~anvD~lliv~~~~~p~~~~~~l~r~L~~a~~---~~~~~~ivlnK~Dl~~~~~--~~~~~~~~~~~~~~~~~~s~~~ 146 (327)
..+.++|.+++|+++..+. +...+..++..... .+.|+++|.||+|+.+... ..........++++.+.+|+.+
T Consensus 91 ~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 169 (191)
T 3dz8_A 91 AYYRGAMGFILMYDITNEE-SFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKE 169 (191)
T ss_dssp HHHTTCCEEEEEEETTCHH-HHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTT
T ss_pred HHHccCCEEEEEEECcCHH-HHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEECCC
Confidence 3568999999999987642 23344555544443 4788999999999965421 1111222344577888999988
Q ss_pred hhhHHHHHhh
Q 020346 147 KLGLDSLLQR 156 (327)
Q Consensus 147 ~~~l~~l~~~ 156 (327)
..+++++-..
T Consensus 170 ~~gi~~l~~~ 179 (191)
T 3dz8_A 170 NISVRQAFER 179 (191)
T ss_dssp TBSHHHHHHH
T ss_pred CCCHHHHHHH
Confidence 8777766443
|
| >2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A | Back alignment and structure |
|---|
Probab=96.24 E-value=0.0024 Score=54.87 Aligned_cols=25 Identities=24% Similarity=0.436 Sum_probs=22.3
Q ss_pred cCCCEEEEEcCCCCCHHHHHHHHcC
Q 020346 157 LRDQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 157 l~g~~v~lvG~sG~GKSTLln~L~g 181 (327)
..+..++|+|++||||||+.+.|..
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3677899999999999999999975
|
| >2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=96.24 E-value=0.0014 Score=59.00 Aligned_cols=24 Identities=21% Similarity=0.389 Sum_probs=22.2
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcC
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g 181 (327)
.+..+.|+|+|||||||+.+.|..
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999999987
|
| >2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A | Back alignment and structure |
|---|
Probab=96.23 E-value=0.0019 Score=58.28 Aligned_cols=21 Identities=24% Similarity=0.461 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHcC
Q 020346 161 TTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g 181 (327)
.++|+|+||||||||.+.|+.
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999999976
|
| >4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=96.21 E-value=0.021 Score=49.19 Aligned_cols=81 Identities=17% Similarity=0.197 Sum_probs=51.2
Q ss_pred cccccEEEEEeecCCCCCChHHHHHHHHHHHhcCCCEEEEeecCCCCcHHHHHHH----Hhhhhh-------cCCceeec
Q 020346 74 VANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTW----KSRLHT-------WGYEPLFC 142 (327)
Q Consensus 74 ~anvD~lliv~~~~~p~~~~~~l~r~L~~a~~~~~~~~ivlnK~Dl~~~~~~~~~----~~~~~~-------~~~~~~~~ 142 (327)
+..+|.+++|+++..+ ++.. -..++......+.|+++|+||+|+.+....... ...+.. .+.+.+.+
T Consensus 113 ~~~~d~vi~v~d~~~~-~~~~-~~~~~~~l~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 190 (223)
T 4dhe_A 113 RPQLCGMILMMDARRP-LTEL-DRRMIEWFAPTGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDAGYAGKLTVQLF 190 (223)
T ss_dssp CTTEEEEEEEEETTSC-CCHH-HHHHHHHHGGGCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTCCSCEEEEEE
T ss_pred CcCcCEEEEEEeCCCC-CCHH-HHHHHHHHHhcCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhcccCCCCeEEEe
Confidence 4558999999998764 3322 222333344578899999999999876543222 222322 34567888
Q ss_pred cCcchhhHHHHHhh
Q 020346 143 SVESKLGLDSLLQR 156 (327)
Q Consensus 143 s~~~~~~l~~l~~~ 156 (327)
|+.+..+++++...
T Consensus 191 SA~~g~gv~~l~~~ 204 (223)
T 4dhe_A 191 SALKRTGLDDAHAL 204 (223)
T ss_dssp BTTTTBSHHHHHHH
T ss_pred ecCCCcCHHHHHHH
Confidence 88777777665443
|
| >1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=96.21 E-value=0.0024 Score=54.71 Aligned_cols=22 Identities=23% Similarity=0.329 Sum_probs=20.3
Q ss_pred CEEEEEcCCCCCHHHHHHHHcC
Q 020346 160 QTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 160 ~~v~lvG~sG~GKSTLln~L~g 181 (327)
.+++|+|+||||||||++.|.+
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999987
|
| >1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1 | Back alignment and structure |
|---|
Probab=96.21 E-value=0.0021 Score=56.21 Aligned_cols=23 Identities=17% Similarity=0.362 Sum_probs=20.7
Q ss_pred CCEEEEEcCCCCCHHHHHHHHcC
Q 020346 159 DQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 159 g~~v~lvG~sG~GKSTLln~L~g 181 (327)
+..++|+|++||||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999975
|
| >4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A* | Back alignment and structure |
|---|
Probab=96.20 E-value=0.0054 Score=52.70 Aligned_cols=89 Identities=19% Similarity=0.267 Sum_probs=54.8
Q ss_pred ccccccccccccEEEEEeecCCCCCChHHHH-HHHHHHHh--cCCCEEEEeecCCCCcHHHHHH--------------HH
Q 020346 67 TEILDPPVANVDHLLLLFSMDQPKLEPFALT-RFLVEAES--TGIPLTLALNKVELVDEEVLNT--------------WK 129 (327)
Q Consensus 67 ~~l~r~~~anvD~lliv~~~~~p~~~~~~l~-r~L~~a~~--~~~~~~ivlnK~Dl~~~~~~~~--------------~~ 129 (327)
..+.+..+.++|.+++|+++..+. +...+. .++..... .+.|+++|.||+|+.+...... ..
T Consensus 92 ~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~ 170 (204)
T 4gzl_A 92 DRLRPLSYPQTDVFLICFSLVSPA-SFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGL 170 (204)
T ss_dssp TTTGGGGCTTCSEEEEEEETTCHH-HHHHHHHTHHHHHHHHCSSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHH
T ss_pred HHHHHHHhccCCEEEEEEECCCHH-HHHHHHHHHHHHHHHhCCCCCEEEEEechhhccchhhhhhhhccccccccHHHHH
Confidence 344445678999999999987642 222333 34433333 3789999999999976433111 11
Q ss_pred hhhhhcCC-ceeeccCcchhhHHHHHhh
Q 020346 130 SRLHTWGY-EPLFCSVESKLGLDSLLQR 156 (327)
Q Consensus 130 ~~~~~~~~-~~~~~s~~~~~~l~~l~~~ 156 (327)
.....+++ +.+.+|+.++.+++.+-..
T Consensus 171 ~~~~~~~~~~~~~~SA~~g~gi~~l~~~ 198 (204)
T 4gzl_A 171 AMAKEIGAVKYLECSALTQRGLKTVFDE 198 (204)
T ss_dssp HHHHHTTCSEEEECCTTTCTTHHHHHHH
T ss_pred HHHHhcCCcEEEEeeCCCCCCHHHHHHH
Confidence 12233454 4777888877777766443
|
| >3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.19 E-value=0.0017 Score=62.02 Aligned_cols=24 Identities=25% Similarity=0.329 Sum_probs=22.8
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcC
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g 181 (327)
+|.++.|.||||+|||||+..++.
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~ 83 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIA 83 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 688999999999999999999998
|
| >3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A* | Back alignment and structure |
|---|
Probab=96.18 E-value=0.0023 Score=55.54 Aligned_cols=21 Identities=24% Similarity=0.403 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHcC
Q 020346 161 TTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g 181 (327)
.++|+|++||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999964
|
| >2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.17 E-value=0.013 Score=47.30 Aligned_cols=78 Identities=22% Similarity=0.415 Sum_probs=52.3
Q ss_pred ccccccEEEEEeecCCCCCCh-HHHHHHHHHHHhcCCCEEEEeecCCCCcHHHHHHHHhhhhhcCC-ceeeccCcchhhH
Q 020346 73 PVANVDHLLLLFSMDQPKLEP-FALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGY-EPLFCSVESKLGL 150 (327)
Q Consensus 73 ~~anvD~lliv~~~~~p~~~~-~~l~r~L~~a~~~~~~~~ivlnK~Dl~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~l 150 (327)
...++|.++++++...+.... ..+.+++ ...+.|+++|.||+|+.+..+ ....+..+++ +.+.+|..+..++
T Consensus 76 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~---~~~~~p~ilv~nK~Dl~~~~~---~~~~~~~~~~~~~~~~Sa~~~~gv 149 (161)
T 2dyk_A 76 ALEDAEVVLFAVDGRAELTQADYEVAEYL---RRKGKPVILVATKVDDPKHEL---YLGPLYGLGFGDPIPTSSEHARGL 149 (161)
T ss_dssp HTTTCSEEEEEEESSSCCCHHHHHHHHHH---HHHTCCEEEEEECCCSGGGGG---GCGGGGGGSSCSCEECBTTTTBSH
T ss_pred HHHhCCEEEEEEECCCcccHhHHHHHHHH---HhcCCCEEEEEECcccccchH---hHHHHHhCCCCCeEEEecccCCCh
Confidence 467899999999987653221 1233333 346889999999999986531 1223335677 6788998888777
Q ss_pred HHHHhh
Q 020346 151 DSLLQR 156 (327)
Q Consensus 151 ~~l~~~ 156 (327)
+++-..
T Consensus 150 ~~l~~~ 155 (161)
T 2dyk_A 150 EELLEA 155 (161)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 776543
|
| >3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A | Back alignment and structure |
|---|
Probab=96.17 E-value=0.0093 Score=62.41 Aligned_cols=24 Identities=25% Similarity=0.423 Sum_probs=22.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHcCCC
Q 020346 160 QTTVIVGPSGVGKSSLINALRSSP 183 (327)
Q Consensus 160 ~~v~lvG~sG~GKSTLln~L~g~~ 183 (327)
-.++|+|.+++|||||+|+|.|..
T Consensus 52 p~I~vvG~~saGKSSllnaL~g~~ 75 (772)
T 3zvr_A 52 PQIAVVGGQSAGKSSVLENFVGRD 75 (772)
T ss_dssp SEEEEEECTTTCHHHHHHHHHSSC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 489999999999999999999953
|
| >3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.17 E-value=0.0075 Score=50.94 Aligned_cols=83 Identities=13% Similarity=0.085 Sum_probs=54.4
Q ss_pred ccccccEEEEEeecCCCCCChHHHHHHHHHHHh------cCCCEEEEeecCCCCcHHH--HHHHHhhhhhcCCceeeccC
Q 020346 73 PVANVDHLLLLFSMDQPKLEPFALTRFLVEAES------TGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLFCSV 144 (327)
Q Consensus 73 ~~anvD~lliv~~~~~p~~~~~~l~r~L~~a~~------~~~~~~ivlnK~Dl~~~~~--~~~~~~~~~~~~~~~~~~s~ 144 (327)
.+.++|.+++|+++..+. +...+..++..... .+.|+++|.||+|+.+... ..........+++..+.+|+
T Consensus 88 ~~~~~~~~ilv~d~~~~~-s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa 166 (187)
T 3c5c_A 88 YLNWAHAFLVVYSVDSRQ-SFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSA 166 (187)
T ss_dssp HHTTCSEEEEEEETTCHH-HHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECCS
T ss_pred HHhhCCEEEEEEECCCHH-HHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHcCCcEEEEee
Confidence 457899999999997642 33445555444432 4789999999999965321 11122233445778889999
Q ss_pred -cchhhHHHHHhh
Q 020346 145 -ESKLGLDSLLQR 156 (327)
Q Consensus 145 -~~~~~l~~l~~~ 156 (327)
.+..+++.+-..
T Consensus 167 ~~~g~gv~~lf~~ 179 (187)
T 3c5c_A 167 CLDFEHVQHVFHE 179 (187)
T ss_dssp SSCSHHHHHHHHH
T ss_pred cCccccHHHHHHH
Confidence 777777766443
|
| >2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.16 E-value=0.0033 Score=53.80 Aligned_cols=85 Identities=15% Similarity=0.099 Sum_probs=54.9
Q ss_pred ccccccccEEEEEeecCCCCCChHHHHHHHHHHHh---cCCCEEEEeecCCCCcHHH--HHHHHhhhhhcCCceeeccCc
Q 020346 71 DPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES---TGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLFCSVE 145 (327)
Q Consensus 71 r~~~anvD~lliv~~~~~p~~~~~~l~r~L~~a~~---~~~~~~ivlnK~Dl~~~~~--~~~~~~~~~~~~~~~~~~s~~ 145 (327)
+..+.++|.+++|+++..+. +...+..++..... .+.|+++|+||+|+.+... ...........++..+.+|+.
T Consensus 92 ~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~ 170 (200)
T 2o52_A 92 RSYYRGAAGALLVYDITSRE-TYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSAL 170 (200)
T ss_dssp HHHHTTCSEEEEEEETTCHH-HHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTT
T ss_pred HHHhccCCEEEEEEECcCHH-HHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCC
Confidence 34578999999999987642 33345555544432 4778999999999965321 112223334466778888888
Q ss_pred chhhHHHHHhh
Q 020346 146 SKLGLDSLLQR 156 (327)
Q Consensus 146 ~~~~l~~l~~~ 156 (327)
+..+++.+-..
T Consensus 171 ~g~gi~~l~~~ 181 (200)
T 2o52_A 171 TGENVEEAFLK 181 (200)
T ss_dssp TCTTHHHHHHH
T ss_pred CCCCHHHHHHH
Confidence 77777665443
|
| >1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A* | Back alignment and structure |
|---|
Probab=96.16 E-value=0.0038 Score=60.12 Aligned_cols=54 Identities=20% Similarity=0.233 Sum_probs=0.0
Q ss_pred EEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecc--------------eeeccccccCCCcceeeEEE
Q 020346 161 TTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFED--------------QRVGEVSTKSGRGKHTTRHV 226 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g--------------~~v~~~s~~~~~g~~tt~~i 226 (327)
.++++|.+|+|||||++.|.+ . .+........+ .|..+
T Consensus 5 ~I~iiG~~~~GKSTLi~~L~~------------------------~~~~~g~~~~~~~~~~d~~~~e~~~g----iTi~~ 56 (397)
T 1d2e_A 5 NVGTIGHVDHGKTTLTAAITK------------------------ILAEGGGAKFKKYEEIDNAPEERARG----ITINA 56 (397)
T ss_dssp EEEEESSTTSSHHHHHHHHHH------------------------HHHHTTSBCCCCHHHHHSCCEEEETT----EEEEC
T ss_pred EEEEEeCCCCCHHHHHHHHhC------------------------hhhhcCccccchhhhhhcCHHHHhcC----cEEEe
Q ss_pred EEEEccCCC---eEEeCcc
Q 020346 227 SLLPLSGGG---YLADTPG 242 (327)
Q Consensus 227 ~~v~q~~~~---~i~Dtpg 242 (327)
.++...... .++||||
T Consensus 57 ~~~~~~~~~~~~~iiDtpG 75 (397)
T 1d2e_A 57 AHVEYSTAARHYAHTDCPG 75 (397)
T ss_dssp EEEEEECSSCEEEEEECSS
T ss_pred eeEEeccCCeEEEEEECCC
|
| >2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.16 E-value=0.0095 Score=51.08 Aligned_cols=55 Identities=24% Similarity=0.455 Sum_probs=36.8
Q ss_pred cccccccccccEEEEEeecCCCCCChHHH-HHHHHHHHh--cCCCEEEEeecCCCCcHH
Q 020346 68 EILDPPVANVDHLLLLFSMDQPKLEPFAL-TRFLVEAES--TGIPLTLALNKVELVDEE 123 (327)
Q Consensus 68 ~l~r~~~anvD~lliv~~~~~p~~~~~~l-~r~L~~a~~--~~~~~~ivlnK~Dl~~~~ 123 (327)
.+.+..+.++|.+++|+++..+. +...+ ..++..... .+.|+++|+||+|+.+..
T Consensus 88 ~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 145 (207)
T 2fv8_A 88 RLRPLSYPDTDVILMCFSVDSPD-SLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDE 145 (207)
T ss_dssp TTGGGGCTTCCEEEEEEETTCHH-HHHHHHHTHHHHHHHHSTTCCEEEEEECGGGGGCH
T ss_pred HHHHhhcCCCCEEEEEEECCCHH-HHHHHHHHHHHHHHHhCCCCCEEEEEEchhhhccc
Confidence 33445678999999999987642 22233 233333333 378999999999997653
|
| >2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.15 E-value=0.0027 Score=53.62 Aligned_cols=21 Identities=24% Similarity=0.328 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHcC
Q 020346 161 TTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g 181 (327)
.++|.|++||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999975
|
| >1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A* | Back alignment and structure |
|---|
Probab=96.14 E-value=0.0023 Score=53.21 Aligned_cols=22 Identities=23% Similarity=0.448 Sum_probs=19.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHcC
Q 020346 160 QTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 160 ~~v~lvG~sG~GKSTLln~L~g 181 (327)
..++|.|++||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999975
|
| >3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.12 E-value=0.0023 Score=54.59 Aligned_cols=87 Identities=14% Similarity=0.189 Sum_probs=50.6
Q ss_pred cccccccccEEEEEeecCCCCCChHHHHHHHHHHHhc---CCCEEEEeecCCCCcHHHH--HHHHhhhhhcCCceeeccC
Q 020346 70 LDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAEST---GIPLTLALNKVELVDEEVL--NTWKSRLHTWGYEPLFCSV 144 (327)
Q Consensus 70 ~r~~~anvD~lliv~~~~~p~~~~~~l~r~L~~a~~~---~~~~~ivlnK~Dl~~~~~~--~~~~~~~~~~~~~~~~~s~ 144 (327)
....+.++|.+++|+++..+. +...+..++...... +.|+++|.||+|+.+.... .........++++.+.+|+
T Consensus 99 ~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA 177 (199)
T 3l0i_B 99 TSSYYRGAHGIIVVYDVTDQE-SFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSA 177 (199)
T ss_dssp SCC--CCCSEEEECC-CCCSH-HHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTTTCCBCCCCC
T ss_pred HHHHhhcCCEEEEEEECCCHH-HHHHHHHHHHHHHHhccCCCCEEEEEECccCCccccCCHHHHHHHHHHcCCeEEEEEC
Confidence 334578999999999987642 344566666555432 6789999999999754311 0111223345677888898
Q ss_pred cchhhHHHHHhhc
Q 020346 145 ESKLGLDSLLQRL 157 (327)
Q Consensus 145 ~~~~~l~~l~~~l 157 (327)
.+..+++++-..+
T Consensus 178 ~~g~gv~~l~~~l 190 (199)
T 3l0i_B 178 KNATNVEQSFMTM 190 (199)
T ss_dssp ---HHHHHHHHHH
T ss_pred CCCCCHHHHHHHH
Confidence 8888887765543
|
| >2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.12 E-value=0.0063 Score=52.49 Aligned_cols=87 Identities=16% Similarity=0.144 Sum_probs=55.0
Q ss_pred ccccccccccEEEEEeecCCCCCChHHHHHHHHHHHh---cCCCEEEEeecCCCCcHHH--HHHHHhhhhhcCCceeecc
Q 020346 69 ILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES---TGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLFCS 143 (327)
Q Consensus 69 l~r~~~anvD~lliv~~~~~p~~~~~~l~r~L~~a~~---~~~~~~ivlnK~Dl~~~~~--~~~~~~~~~~~~~~~~~~s 143 (327)
+.+..+.++|.+++|+++..+. +...+..++..... .+.|+++|.||+|+.+... ...........++..+.+|
T Consensus 91 ~~~~~~~~~d~~i~v~D~~~~~-s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~S 169 (201)
T 2ew1_A 91 ITQSYYRSANALILTYDITCEE-SFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETS 169 (201)
T ss_dssp HHGGGSTTCSEEEEEEETTCHH-HHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECC
T ss_pred HHHHHHhcCCEEEEEEECCCHH-HHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCEEEEEe
Confidence 3444678999999999987642 33345555544432 3678899999999975321 1111122234567788889
Q ss_pred CcchhhHHHHHhh
Q 020346 144 VESKLGLDSLLQR 156 (327)
Q Consensus 144 ~~~~~~l~~l~~~ 156 (327)
+.+..+++++-..
T Consensus 170 a~~g~gv~~l~~~ 182 (201)
T 2ew1_A 170 AKESDNVEKLFLD 182 (201)
T ss_dssp TTTCTTHHHHHHH
T ss_pred CCCCCCHHHHHHH
Confidence 8887777665443
|
| >2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.11 E-value=0.0038 Score=50.98 Aligned_cols=85 Identities=15% Similarity=0.209 Sum_probs=52.7
Q ss_pred ccccccccEEEEEeecCCCCCChHHHHHHHHHHHh-----cCCCEEEEeecCCCCcHHHH--HHHHhhhhhcCCceeecc
Q 020346 71 DPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES-----TGIPLTLALNKVELVDEEVL--NTWKSRLHTWGYEPLFCS 143 (327)
Q Consensus 71 r~~~anvD~lliv~~~~~p~~~~~~l~r~L~~a~~-----~~~~~~ivlnK~Dl~~~~~~--~~~~~~~~~~~~~~~~~s 143 (327)
+..+.++|.+++|+++..|. +...+..++..... .+.|+++|+||+|+.+.... .........++++.+.+|
T Consensus 69 ~~~~~~~~~~i~v~d~~~~~-~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~S 147 (172)
T 2erx_A 69 RLSISKGHAFILVYSITSRQ-SLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETS 147 (172)
T ss_dssp HHHHHHCSEEEEEEETTCHH-HHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECB
T ss_pred HHhcccCCEEEEEEECcCHH-HHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEec
Confidence 34567899999999987642 12223333322221 37899999999999754211 111222334567888899
Q ss_pred CcchhhHHHHHhh
Q 020346 144 VESKLGLDSLLQR 156 (327)
Q Consensus 144 ~~~~~~l~~l~~~ 156 (327)
+.+..+++++-..
T Consensus 148 a~~~~gi~~l~~~ 160 (172)
T 2erx_A 148 AKLNHNVKELFQE 160 (172)
T ss_dssp TTTTBSHHHHHHH
T ss_pred CCCCcCHHHHHHH
Confidence 8888777776554
|
| >4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A | Back alignment and structure |
|---|
Probab=96.11 E-value=0.0021 Score=61.46 Aligned_cols=36 Identities=17% Similarity=-0.025 Sum_probs=28.6
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeec
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~ 205 (327)
.+..++|+|+||+|||||++.|+. .+.+..+.|++-
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~------------~~~~~~~~~~~~ 69 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLL------------REYMQGSRVIII 69 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHH------------HHHTTTCCEEEE
T ss_pred ccCceEEEcCCCCCHHHHHHHHHH------------HHHHCCCEEEEE
Confidence 467799999999999999999997 444556666653
|
| >1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 | Back alignment and structure |
|---|
Probab=96.11 E-value=0.0026 Score=62.01 Aligned_cols=74 Identities=22% Similarity=0.151 Sum_probs=0.0
Q ss_pred EEEEEcCCCCCHHHHHHHHcCCCCCCCccccccc-----------------ccccccceeecceeeccccccCCCcceee
Q 020346 161 TTVIVGPSGVGKSSLINALRSSPHASDAADVDNW-----------------FEPILGSKWFEDQRVGEVSTKSGRGKHTT 223 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~-----------------~~p~~G~i~~~g~~v~~~s~~~~~g~~tt 223 (327)
.++++|.+|+|||||+|.|++ - ..++.|.-+-....+........+|....
T Consensus 26 ~i~iiG~~~~GKSTLi~~Ll~------------~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~ 93 (434)
T 1zun_B 26 RFLTCGNVDDGKSTLIGRLLH------------DSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITID 93 (434)
T ss_dssp EEEEECCTTSSHHHHHHHHHH------------HTTCC------------------CCC--CHHHHHHHHC-----CCCC
T ss_pred EEEEEECCCCCHHHHHHHHHh------------hcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEE
Q ss_pred EEEEEEEccC-CCeEEeCcccCCc
Q 020346 224 RHVSLLPLSG-GGYLADTPGFNQP 246 (327)
Q Consensus 224 ~~i~~v~q~~-~~~i~Dtpg~~~~ 246 (327)
....++.... ...++||||...+
T Consensus 94 ~~~~~~~~~~~~~~iiDtpGh~~f 117 (434)
T 1zun_B 94 VAYRYFSTAKRKFIIADTPGHEQY 117 (434)
T ss_dssp CEEEEEECSSEEEEEEECCCSGGG
T ss_pred eeeeEeecCCceEEEEECCChHHH
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 327 | ||||
| d1u0la2 | 225 | c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C | 6e-57 | |
| d1t9ha2 | 231 | c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C | 9e-54 | |
| d1t9ha1 | 67 | b.40.4.5 (A:1-67) Probable GTPase EngC (YjeQ), N-t | 5e-07 | |
| d2gj8a1 | 161 | c.37.1.8 (A:216-376) Probable tRNA modification GT | 5e-05 | |
| d1mkya2 | 186 | c.37.1.8 (A:173-358) Probable GTPase Der, N-termin | 2e-04 | |
| d1fzqa_ | 176 | c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus | 2e-04 | |
| d1kgda_ | 178 | c.37.1.1 (A:) Guanylate kinase-like domain of Cask | 3e-04 | |
| d1xzpa2 | 160 | c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotog | 3e-04 | |
| d1znwa1 | 182 | c.37.1.1 (A:20-201) Guanylate kinase {Mycobacteriu | 4e-04 | |
| d1s96a_ | 205 | c.37.1.1 (A:) Guanylate kinase {Escherichia coli [ | 5e-04 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 5e-04 | |
| d1u0la1 | 66 | b.40.4.5 (A:3-68) Probable GTPase EngC (YjeQ), N-t | 5e-04 | |
| d1lvga_ | 190 | c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculu | 5e-04 | |
| d1gkya_ | 186 | c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Sac | 7e-04 | |
| d2cxxa1 | 184 | c.37.1.8 (A:2-185) GTP-binding protein engB {Pyroc | 8e-04 | |
| d1h65a_ | 257 | c.37.1.8 (A:) Chloroplast protein translocon GTPas | 9e-04 | |
| d1mkya1 | 171 | c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal | 0.001 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 0.001 | |
| d2qtvb1 | 166 | c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharom | 0.002 | |
| d1lnza2 | 185 | c.37.1.8 (A:158-342) Obg GTP-binding protein middl | 0.002 | |
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 0.003 | |
| d1tq4a_ | 400 | c.37.1.8 (A:) Interferon-inducible GTPase {Mouse ( | 0.003 | |
| d1wf3a1 | 178 | c.37.1.8 (A:3-180) GTPase Era, N-terminal domain { | 0.003 | |
| d1r8sa_ | 160 | c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo | 0.004 | |
| d1egaa1 | 179 | c.37.1.8 (A:4-182) GTPase Era, N-terminal domain { | 0.004 | |
| d1wxqa1 | 319 | c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyr | 0.004 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 0.004 | |
| d1e69a_ | 308 | c.37.1.12 (A:) Smc head domain {Thermotoga maritim | 0.004 |
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} Length = 225 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Score = 182 bits (462), Expect = 6e-57
Identities = 74/252 (29%), Positives = 118/252 (46%), Gaps = 38/252 (15%)
Query: 68 EILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNT 127
+ P VANVD ++L+ ++ P+ + + +FLV AE + + +NK++L DE+ L
Sbjct: 2 LLTKPHVANVDQVILVVTVKMPETSTYIIDKFLVLAEKNELETVMVINKMDLYDEDDLRK 61
Query: 128 WKSRLHTWG--YEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHA 185
+ + Y + S ++ +G++ L + L+ + + + G SGVGKSSL+NA+
Sbjct: 62 VRELEEIYSGLYPIVKTSAKTGMGIEELKEYLKGKISTMAGLSGVGKSSLLNAINP---- 117
Query: 186 SDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQ 245
RV EVS K RG+HTT LL GGY+ DTPGF
Sbjct: 118 ------------------GLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFAN 159
Query: 246 PSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQ 298
+ + + L F E +C F++C H+ EP C VK E RY+
Sbjct: 160 LEINDIEPEELKHYFKEF-------GDKQCFFSDCNHVDEPECGVKEAVENGEIAESRYE 212
Query: 299 YYFQLLDEIRIR 310
Y ++ E+ R
Sbjct: 213 NYVKMFYELLGR 224
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Score = 174 bits (441), Expect = 9e-54
Identities = 86/256 (33%), Positives = 126/256 (49%), Gaps = 39/256 (15%)
Query: 68 EILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEE---- 123
E++ PP+ NVD +L+FS QP L RFLV E+ I + + K++L++++
Sbjct: 2 ELIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEANDIQPIICITKMDLIEDQDTED 61
Query: 124 VLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSP 183
+ + GY+ S + + L ++ +D+TTV G SGVGKSSL+NA+
Sbjct: 62 TIQAYAEDYRNIGYDVYLTSSKDQDSLADIIPHFQDKTTVFAGQSGVGKSSLLNAISP-- 119
Query: 184 HASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGF 243
R E+S GRGKHTTRHV L+ S GG +ADTPGF
Sbjct: 120 --------------------ELGLRTNEISEHLGRGKHTTRHVELIHTS-GGLVADTPGF 158
Query: 244 NQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------R 296
+ + ++ L TFP+I+E + C F CLHL EP C VK E R
Sbjct: 159 SSLEFTDIEEEELGYTFPDIREKS-----SSCKFRGCLHLKEPKCAVKQAVEDGELKQYR 213
Query: 297 YQYYFQLLDEIRIREE 312
Y +Y + + EI+ R+
Sbjct: 214 YDHYVEFMTEIKDRKP 229
|
| >d1t9ha1 b.40.4.5 (A:1-67) Probable GTPase EngC (YjeQ), N-terminal domain {Bacillus subtilis [TaxId: 1423]} Length = 67 | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: Probable GTPase EngC (YjeQ), N-terminal domain species: Bacillus subtilis [TaxId: 1423]
Score = 44.3 bits (105), Expect = 5e-07
Identities = 13/50 (26%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 17 NDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRS 66
++ + + C R + +K K LVGD VV + + D+ G + + +R+
Sbjct: 20 SEDSDKVIQCRGRGIFRKNKITPLVGDYVVYQAEN--DKEGYLMEIKERT 67
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} Length = 161 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Score = 40.9 bits (94), Expect = 5e-05
Identities = 12/47 (25%), Positives = 17/47 (36%)
Query: 163 VIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRV 209
VI G GKSSL+NAL A + + + +
Sbjct: 5 VIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPL 51
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Score = 39.3 bits (90), Expect = 2e-04
Identities = 16/63 (25%), Positives = 26/63 (41%)
Query: 163 VIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHT 222
IVG VGKS+L NA+ + A + +P+ + + ++ V T R K
Sbjct: 12 AIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSR 71
Query: 223 TRH 225
Sbjct: 72 VEP 74
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} Length = 176 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Score = 39.2 bits (90), Expect = 2e-04
Identities = 11/53 (20%), Positives = 23/53 (43%), Gaps = 5/53 (9%)
Query: 149 GLDSLLQRLRDQTT-----VIVGPSGVGKSSLINALRSSPHASDAADVDNWFE 196
GL S+L++L+ +++G GK++L+ L S + +
Sbjct: 1 GLLSILRKLKSAPDQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIK 53
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.1 bits (90), Expect = 3e-04
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 163 VIVGPSGVGKSSLINALRSS 182
V++G GVG+ + N L +
Sbjct: 7 VLLGAHGVGRRHIKNTLITK 26
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} Length = 160 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Score = 38.4 bits (88), Expect = 3e-04
Identities = 15/52 (28%), Positives = 19/52 (36%)
Query: 163 VIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214
VIVG VGKS+L+N L + A + I V T
Sbjct: 4 VIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDT 55
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 182 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 38.4 bits (88), Expect = 4e-04
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 163 VIVGPSGVGKSSLINALRS 181
V+ GPS VGKS+++ LR
Sbjct: 6 VLSGPSAVGKSTVVRCLRE 24
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} Length = 205 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Score = 38.3 bits (88), Expect = 5e-04
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 163 VIVGPSGVGKSSLINALRSS 182
++ PSG GKSSLI AL +
Sbjct: 6 IVSAPSGAGKSSLIQALLKT 25
|
| >d1u0la1 b.40.4.5 (A:3-68) Probable GTPase EngC (YjeQ), N-terminal domain {Thermotoga maritima [TaxId: 2336]} Length = 66 | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: Probable GTPase EngC (YjeQ), N-terminal domain species: Thermotoga maritima [TaxId: 2336]
Score = 35.9 bits (83), Expect = 5e-04
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Query: 18 DKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQR 65
++TG +LC +R + ++ VGD+V + G+IENV R
Sbjct: 20 EETGERILCKLRGKFRLQNLKIYVGDRVEYTPDE--TGSGVIENVLHR 65
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} Length = 190 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Score = 38.4 bits (88), Expect = 5e-04
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 163 VIVGPSGVGKSSLINALRSS 182
V+ GPSG GKS+L+ L
Sbjct: 4 VLSGPSGAGKSTLLKKLFQE 23
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 37.6 bits (86), Expect = 7e-04
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 163 VIVGPSGVGKSSLINALRSS 182
VI GPSG GKS+L+ L +
Sbjct: 5 VISGPSGTGKSTLLKKLFAE 24
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} Length = 184 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Score = 37.4 bits (85), Expect = 8e-04
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 161 TTVIVGPSGVGKSSLINALRSS 182
T + G S VGKS+LI L
Sbjct: 2 TIIFAGRSNVGKSTLIYRLTGK 23
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 257 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Score = 37.9 bits (87), Expect = 9e-04
Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 5/65 (7%)
Query: 150 LDSLLQRLRDQ-----TTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWF 204
L LL L+ + T +++G GVGKSS +N++ S + P++ S+
Sbjct: 18 LLELLGNLKQEDVNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSR 77
Query: 205 EDQRV 209
+
Sbjct: 78 AGFTL 82
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 171 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Score = 37.0 bits (84), Expect = 0.001
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 161 TTVIVGPSGVGKSSLINALRSSPHA 185
T +IVG VGKS+L N L A
Sbjct: 2 TVLIVGRPNVGKSTLFNKLVKKKKA 26
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 36.6 bits (83), Expect = 0.002
Identities = 12/65 (18%), Positives = 24/65 (36%), Gaps = 1/65 (1%)
Query: 163 VIVGPSGVGKSSLINALRSSPHASDAADV-DNWFEPILGSKWFEDQRVGEVSTKSGRGKH 221
+ +G GK++L++ L++ A+ E +G+ F +G K
Sbjct: 4 LFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKFTTFDLGGHIQARRLWKD 63
Query: 222 TTRHV 226
V
Sbjct: 64 YFPEV 68
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} Length = 185 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Score = 36.5 bits (83), Expect = 0.002
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Query: 164 IVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQR 208
+VG VGKS+L++ + S+ A P LG +D R
Sbjct: 6 LVGFPSVGKSTLLSVVSSA-KPKIADYHFTTLVPNLGMVETDDGR 49
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 36.3 bits (84), Expect = 0.003
Identities = 15/61 (24%), Positives = 25/61 (40%), Gaps = 12/61 (19%)
Query: 160 QTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRG 219
+T VG SG GKS+LIN + +++ G + + + T S R
Sbjct: 45 ETVAFVGMSGGGKSTLINLI------------PRFYDVTSGQILIDGHNIKDFLTGSLRN 92
Query: 220 K 220
+
Sbjct: 93 Q 93
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} Length = 400 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Score = 36.7 bits (84), Expect = 0.003
Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Query: 150 LDSLLQRLRDQTT--VIVGPSGVGKSSLINALRSSPHASDAA 189
+ L+ + + G +G GKSS IN LR + + A
Sbjct: 45 ISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGA 86
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Score = 35.9 bits (81), Expect = 0.003
Identities = 11/33 (33%), Positives = 14/33 (42%), Gaps = 4/33 (12%)
Query: 163 VIVGPSGVGKSSLINALRSSPHASDAADVDNWF 195
IVG VGKS+L+N L A +
Sbjct: 9 AIVGKPNVGKSTLLNNLLG----VKVAPISPRP 37
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} Length = 160 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Score = 35.4 bits (80), Expect = 0.004
Identities = 6/36 (16%), Positives = 16/36 (44%)
Query: 163 VIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPI 198
++VG GK++++ L+ + + E +
Sbjct: 4 LMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETV 39
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 179 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 35.5 bits (80), Expect = 0.004
Identities = 10/20 (50%), Positives = 12/20 (60%)
Query: 163 VIVGPSGVGKSSLINALRSS 182
IVG VGKS+L+N L
Sbjct: 9 AIVGRPNVGKSTLLNKLLGQ 28
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} Length = 319 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Score = 36.1 bits (82), Expect = 0.004
Identities = 20/156 (12%), Positives = 44/156 (28%), Gaps = 24/156 (15%)
Query: 164 IVGPSGVGKSSLINALRSSPHASDAADVDNW----FEPILGSKWFEDQRVGEVSTKSGRG 219
+VG VGKS+ +A ++ N+ E +G + + S
Sbjct: 5 VVGKPNVGKSTFFSAATLV-----DVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNP 59
Query: 220 KHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNN 279
++ L + + D G L E + + +
Sbjct: 60 QNYEYRNGLALIP--VKMVDVAG-------------LVPGAHEGRGLGNKFLDDLRMASA 104
Query: 280 CLHLGEPGCVVKGDWERYQYYFQLLDEIRIREEFQL 315
+H+ + + + Y+ + D + E
Sbjct: 105 LIHVVDATGKTDPEGQPTDYHDPVEDIEFLEREIDY 140
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 36.0 bits (83), Expect = 0.004
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 160 QTTVIVGPSGVGKSSLINAL 179
GPSG GKS++ + L
Sbjct: 29 SIIAFAGPSGGGKSTIFSLL 48
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} Length = 308 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Score = 36.2 bits (82), Expect = 0.004
Identities = 12/24 (50%), Positives = 19/24 (79%)
Query: 157 LRDQTTVIVGPSGVGKSSLINALR 180
D+ T IVGP+G GKS++I+A++
Sbjct: 22 FSDRVTAIVGPNGSGKSNIIDAIK 45
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 327 | |||
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 100.0 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 99.92 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 99.92 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 99.9 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 99.9 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 99.9 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 99.9 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 99.89 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 99.89 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 99.89 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 99.89 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 99.89 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 99.89 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 99.88 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 99.87 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 99.87 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 99.87 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 99.86 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 99.84 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 99.76 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 99.76 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 99.75 | |
| d1t9ha1 | 67 | Probable GTPase EngC (YjeQ), N-terminal domain {Ba | 99.52 | |
| d1u0la1 | 66 | Probable GTPase EngC (YjeQ), N-terminal domain {Th | 99.51 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 98.83 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 98.54 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 98.39 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 98.29 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 98.26 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 98.2 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 98.18 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 98.17 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 98.11 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 98.08 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 97.97 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 97.89 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 97.82 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 97.79 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 97.79 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 97.71 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 97.68 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 97.68 | |
| d1ah9a_ | 71 | Translational initiation factor 1, IF1 {Escherichi | 97.63 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 97.56 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 97.53 | |
| d1hr0w_ | 71 | Translational initiation factor 1, IF1 {Escherichi | 97.52 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.5 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 97.5 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 97.49 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 97.48 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 97.46 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 97.43 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 97.42 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 97.37 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 97.37 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 97.36 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 97.35 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 97.34 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 97.33 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 97.33 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 97.31 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 97.31 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 97.29 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 97.29 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 97.28 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 97.27 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 97.26 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 97.24 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 97.24 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 97.23 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 97.23 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 97.22 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.21 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 97.19 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 97.19 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 97.17 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 97.17 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 97.17 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 97.16 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 97.16 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 97.15 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 97.15 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 97.14 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 97.13 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 97.13 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 97.13 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 97.12 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 97.11 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 97.1 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 97.1 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 97.09 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 97.08 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 97.07 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 97.06 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 97.06 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 97.05 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 97.04 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 97.04 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 97.02 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 97.01 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 97.0 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 96.99 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 96.99 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 96.98 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 96.97 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 96.96 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 96.96 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 96.96 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 96.94 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 96.94 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 96.93 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 96.91 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 96.91 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 96.9 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 96.9 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 96.88 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 96.85 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 96.83 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 96.82 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 96.82 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 96.8 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 96.8 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 96.78 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 96.76 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 96.74 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 96.73 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 96.72 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 96.7 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 96.7 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 96.69 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 96.69 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 96.68 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 96.62 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 96.57 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 96.57 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 96.57 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 96.56 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 96.55 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 96.54 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 96.52 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 96.5 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 96.49 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 96.49 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 96.49 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 96.49 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 96.49 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 96.45 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 96.45 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 96.44 | |
| d1d7qa_ | 143 | Translation initiation factor-1a, eIF1a {Human (Ho | 96.43 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 96.43 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 96.43 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 96.4 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 96.39 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 96.39 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 96.39 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 96.36 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 96.35 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 96.31 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 96.31 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 96.29 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 96.29 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 96.28 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 96.25 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 96.21 | |
| d1jt8a_ | 102 | Archaeal initiation factor-1a, aIF1a {Archaeon Met | 96.19 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 96.19 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 96.18 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 96.17 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 96.14 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 96.12 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 96.08 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 96.04 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 96.04 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 96.02 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 96.01 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 96.0 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 96.0 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 96.0 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 95.98 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 95.98 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 95.96 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 95.95 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 95.89 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 95.86 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 95.83 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 95.82 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 95.78 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 95.78 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 95.71 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 95.69 | |
| d1zunb3 | 222 | Sulfate adenylate transferase subunit cysN/C, EF-T | 95.64 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 95.52 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 95.5 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 95.45 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 95.44 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 95.42 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 95.38 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 95.37 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 95.36 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 95.36 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 95.34 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 95.32 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 95.24 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 95.21 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 95.2 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 95.19 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 95.13 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 95.12 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 95.08 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 95.05 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 95.0 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 94.98 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 94.96 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 94.94 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 94.93 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 94.93 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 94.92 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 94.89 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 94.89 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 94.88 | |
| d1n0ua2 | 341 | Elongation factor 2 (eEF-2), N-terminal (G) domain | 94.82 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 94.81 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 94.79 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 94.78 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 94.69 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 94.67 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 94.64 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 94.6 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 94.55 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 94.55 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 94.54 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 94.54 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 94.53 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 94.51 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 94.51 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 94.51 | |
| d1jbka_ | 195 | ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | 94.5 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 94.43 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 94.42 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 94.37 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 94.35 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 94.35 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 94.33 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 94.21 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 94.17 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 94.06 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 93.84 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 93.82 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 93.81 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 93.8 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 93.8 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 93.8 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 93.79 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 93.74 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 93.65 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 93.63 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 93.61 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 93.53 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 93.52 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 93.5 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 93.47 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 93.45 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 93.43 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 93.36 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 93.24 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 93.24 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 93.21 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 93.05 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 93.03 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 92.97 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 92.94 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 92.84 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 92.72 | |
| d1zunb3 | 222 | Sulfate adenylate transferase subunit cysN/C, EF-T | 92.7 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 92.68 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 92.63 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 92.44 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 92.36 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 92.36 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 92.13 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 92.07 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 92.05 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 91.95 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 91.76 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 91.71 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 91.67 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 91.54 | |
| d1qvra2 | 387 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 91.35 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 91.27 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 91.13 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 91.07 | |
| d1qvra3 | 315 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 91.02 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 90.6 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 90.46 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 90.15 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 90.14 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 90.13 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 90.08 | |
| d2jdia3 | 285 | Central domain of alpha subunit of F1 ATP synthase | 89.86 | |
| d1tuea_ | 205 | Replication protein E1 helicase domain {Human papi | 89.56 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 89.27 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 88.73 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 88.61 | |
| d1g8fa3 | 122 | ATP sulfurylase C-terminal domain {Baker's yeast ( | 88.38 | |
| d1u0ja_ | 267 | Rep 40 protein helicase domain {Adeno-associated v | 88.36 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 88.08 | |
| d1p6xa_ | 333 | Thymidine kinase {Equine herpesvirus type 4 [TaxId | 88.02 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 87.98 | |
| d1uaaa1 | 306 | DEXX box DNA helicase {Escherichia coli, RepD [Tax | 87.81 | |
| d1jnya3 | 224 | Elongation factor eEF-1alpha, N-terminal (G) domai | 87.76 | |
| d1w36d1 | 359 | Exodeoxyribonuclease V alpha chain (RecD) {Escheri | 87.65 | |
| d1pjra1 | 318 | DEXX box DNA helicase {Bacillus stearothermophilus | 87.58 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 87.4 | |
| d1f60a3 | 239 | Elongation factor eEF-1alpha, N-terminal (G) domai | 87.08 | |
| d1fx0a3 | 276 | Central domain of alpha subunit of F1 ATP synthase | 86.76 | |
| d1r5ba3 | 245 | Eukaryotic peptide chain release factor ERF2, G do | 86.19 | |
| d1e2ka_ | 329 | Thymidine kinase {Herpes simplex virus type 1, dif | 86.12 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 85.66 | |
| d1osna_ | 331 | Thymidine kinase {Varicella-zoster virus [TaxId: 1 | 85.55 | |
| d2olra1 | 313 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 85.36 | |
| d1j3ba1 | 318 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 85.21 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 85.03 | |
| d1f60a3 | 239 | Elongation factor eEF-1alpha, N-terminal (G) domai | 84.37 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 83.56 | |
| d1ii2a1 | 323 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 83.33 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 83.2 | |
| d1a1va1 | 136 | HCV helicase domain {Human hepatitis C virus (HCV) | 83.0 | |
| d1yksa1 | 140 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 82.59 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 82.52 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 82.21 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 81.2 | |
| d1r5ba3 | 245 | Eukaryotic peptide chain release factor ERF2, G do | 80.95 | |
| d1ny5a2 | 247 | Transcriptional activator sigm54 (NtrC1), C-termin | 80.43 |
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=1.1e-48 Score=352.29 Aligned_cols=214 Identities=34% Similarity=0.566 Sum_probs=181.3
Q ss_pred ccccccccccccEEEEEeecCCCCCChHHHHHHHHHHHhcCCCEEEEeecCCCCcHHHHHHHHhhh--hhcCCceeeccC
Q 020346 67 TEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRL--HTWGYEPLFCSV 144 (327)
Q Consensus 67 ~~l~r~~~anvD~lliv~~~~~p~~~~~~l~r~L~~a~~~~~~~~ivlnK~Dl~~~~~~~~~~~~~--~~~~~~~~~~s~ 144 (327)
|.|.||+|||+|++++|+++..|.+++.+|+|||+.|+.+++++++|+||+||.++++...+...+ ...+|+++.+|.
T Consensus 1 N~l~RP~vANiD~vliV~s~~~P~~~~~~ldR~Lv~a~~~~i~pvIvlnK~DL~~~~~~~~~~~~~~~~~~~~~v~~vSa 80 (225)
T d1u0la2 1 NLLTKPHVANVDQVILVVTVKMPETSTYIIDKFLVLAEKNELETVMVINKMDLYDEDDLRKVRELEEIYSGLYPIVKTSA 80 (225)
T ss_dssp CEETTTTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHHTTCEEEEEECCGGGCCHHHHHHHHHHHHHHTTTSCEEECCT
T ss_pred CCcCCCCcccCCEEEEEEeCCCCCCCHHHHHHHHHHHHHcCCCEEEEEeCcccCCHHHHHHHHHhhcccccceeEEEecc
Confidence 678999999999999999999999999999999999999999999999999999877655554332 245689999999
Q ss_pred cchhhHHHHHhhcCCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcceeeE
Q 020346 145 ESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTR 224 (327)
Q Consensus 145 ~~~~~l~~l~~~l~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~tt~ 224 (327)
.+..+++.+...++|++++|+|+||||||||||.|.+.. .+.++++|.+.++|+|||+
T Consensus 81 ~~~~g~~~L~~~l~~kt~~~~G~SGVGKSTLiN~L~~~~----------------------~~~T~~vs~~~~rGrHTTt 138 (225)
T d1u0la2 81 KTGMGIEELKEYLKGKISTMAGLSGVGKSSLLNAINPGL----------------------KLRVSEVSEKLQRGRHTTT 138 (225)
T ss_dssp TTCTTHHHHHHHHSSSEEEEECSTTSSHHHHHHHHSTTC----------------------CCC-------------CCC
T ss_pred ccchhHhhHHHHhcCCeEEEECCCCCCHHHHHHhhcchh----------------------hhhccCcccccCCCCcccc
Confidence 999999999998999999999999999999999999954 3678899999999999999
Q ss_pred EEEEEEccCCCeEEeCcccCCccccccCHhHHhhhhHHHHHhcCccccccccccccccccCCceEEcc-------cHHHH
Q 020346 225 HVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG-------DWERY 297 (327)
Q Consensus 225 ~i~~v~q~~~~~i~Dtpg~~~~~l~~~~~~~l~~~~~~~~~~LSgGq~q~~~~~~~~h~~ep~~~v~~-------~~~r~ 297 (327)
+..+++.+.+++++|||||+.+.++.++.+++...|||+ . .+.|+|.+|.|.+||||+|+. +++||
T Consensus 139 ~~~l~~l~~gg~iiDTPG~r~~~l~~~~~~~l~~~F~e~---~----~~~CkF~dC~H~~EpgCaVk~av~~g~i~~~Ry 211 (225)
T d1u0la2 139 TAQLLKFDFGGYVVDTPGFANLEINDIEPEELKHYFKEF---G----DKQCFFSDCNHVDEPECGVKEAVENGEIAESRY 211 (225)
T ss_dssp SCCEEECTTSCEEESSCSSTTCCCCSSCHHHHGGGSTTS---S----SCCCSSTTCCSSSCSSCHHHHHHHHTSSCHHHH
T ss_pred ceeEEEECCCcEEEeCCccccccccccCcchhhhhhhhH---H----hCCCCCCCCCCCCCCCCHHHHHHHcCCCCHHHH
Confidence 999999988999999999999999999999999999997 3 257999999999999999975 45699
Q ss_pred HHHHHHHHHHHH
Q 020346 298 QYYFQLLDEIRI 309 (327)
Q Consensus 298 ~~~~~ll~e~~~ 309 (327)
++|++|++|+.+
T Consensus 212 ~~Y~~l~~el~~ 223 (225)
T d1u0la2 212 ENYVKMFYELLG 223 (225)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHh
Confidence 999999999854
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=100.00 E-value=2.3e-49 Score=357.70 Aligned_cols=216 Identities=39% Similarity=0.712 Sum_probs=180.3
Q ss_pred ccccccccccccEEEEEeecCCCCCChHHHHHHHHHHHhcCCCEEEEeecCCCCcHHHH----HHHHhhhhhcCCceeec
Q 020346 67 TEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVL----NTWKSRLHTWGYEPLFC 142 (327)
Q Consensus 67 ~~l~r~~~anvD~lliv~~~~~p~~~~~~l~r~L~~a~~~~~~~~ivlnK~Dl~~~~~~----~~~~~~~~~~~~~~~~~ 142 (327)
|+|.||+|||+|++++|+++.+|.+++.+|+|||+.|+.+++++++|+||+||.++.+. ..+...+..+||+++.+
T Consensus 1 N~l~RP~vANiD~~~iV~s~~~P~~~~~~idR~Lv~a~~~~i~pvIvlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~~~ 80 (231)
T d1t9ha2 1 NELIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVYLT 80 (231)
T ss_dssp CEETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHTTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEEEC
T ss_pred CCCCCCCccccCEEEEEEECCCCCCCHHHHHHHHHHHHHcCCCEEEEEecccccccHHHHHHHHHHHHHHhhccccceee
Confidence 68999999999999999999889999999999999999999999999999999876543 33456677899999999
Q ss_pred cCcchhhHHHHHhhcCCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCccee
Q 020346 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHT 222 (327)
Q Consensus 143 s~~~~~~l~~l~~~l~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~t 222 (327)
|..+..+++.+...++|++++|+|+||||||||||+|.|.. .+.++++|.+.++|+||
T Consensus 81 Sa~~~~gl~~L~~~l~~~~~vl~G~SGVGKSSLiN~L~~~~----------------------~~~t~~vs~~~~rGrHT 138 (231)
T d1t9ha2 81 SSKDQDSLADIIPHFQDKTTVFAGQSGVGKSSLLNAISPEL----------------------GLRTNEISEHLGRGKHT 138 (231)
T ss_dssp CHHHHTTCTTTGGGGTTSEEEEEESHHHHHHHHHHHHCC-----------------------------------------
T ss_pred ecCChhHHHHHHHhhccceEEEECCCCccHHHHHHhhccHh----------------------HhhhcccccccCCCcee
Confidence 99988899999888899999999999999999999999954 36789999999999999
Q ss_pred eEEEEEEEccCCCeEEeCcccCCccccccCHhHHhhhhHHHHHhcCccccccccccccccccCCceEEcc-------cHH
Q 020346 223 TRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG-------DWE 295 (327)
Q Consensus 223 t~~i~~v~q~~~~~i~Dtpg~~~~~l~~~~~~~l~~~~~~~~~~LSgGq~q~~~~~~~~h~~ep~~~v~~-------~~~ 295 (327)
|++..+++. .+++++|||||+.+.++.++..++...|||+.++ .+.|+|.+|+|.+||||+|+. +++
T Consensus 139 Tt~~~l~~~-~gg~iiDTPG~r~~~l~~~~~~~l~~~F~ei~~~-----~~~CkF~dC~H~~EpgCaV~~av~~g~i~~~ 212 (231)
T d1t9ha2 139 TRHVELIHT-SGGLVADTPGFSSLEFTDIEEEELGYTFPDIREK-----SSSCKFRGCLHLKEPKCAVKQAVEDGELKQY 212 (231)
T ss_dssp CCCCCEEEE-TTEEEESSCSCSSCCCTTCCHHHHGGGSHHHHHH-----GGGCSSTTCCSSSCSSCHHHHHHHHTSSCHH
T ss_pred eeeEEEEec-CCCEEEECCccccccccccCcccchhhhhhHHHH-----hCCCCCCCCCCCCCCCchHHHHHHcCCCCHH
Confidence 999998876 4789999999999999999999999999999988 789999999999999999975 456
Q ss_pred HHHHHHHHHHHHHHh
Q 020346 296 RYQYYFQLLDEIRIR 310 (327)
Q Consensus 296 r~~~~~~ll~e~~~~ 310 (327)
||++|++|++|+.++
T Consensus 213 Ry~~Y~~l~~e~~~~ 227 (231)
T d1t9ha2 213 RYDHYVEFMTEIKDR 227 (231)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999998653
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.92 E-value=5.4e-27 Score=211.21 Aligned_cols=150 Identities=15% Similarity=0.187 Sum_probs=97.0
Q ss_pred CceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccccc
Q 020346 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (327)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~ 215 (327)
++.++++|++..+++++++.+ +|++++|+||||||||||+|+|.| +++|++|+|+++|+++...+.
T Consensus 3 v~nv~k~yg~~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~G------------l~~p~sG~I~i~g~~i~~~~~- 69 (232)
T d2awna2 3 LQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAG------------LETITSGDLFIGEKRMNDTPP- 69 (232)
T ss_dssp EEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHT------------SSCCSEEEEEESSSCCTTSCG-
T ss_pred EEEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCChHHHHHHHHhc------------CCCCCCCEEEECCEECCCCch-
Confidence 567889999999999999998 999999999999999999999999 999999999999999977653
Q ss_pred CCCcceeeEEEEEEEccCCC----eEEeCcccCCccc---------------cccCHhHHhhhhHHHHHhcCcccccccc
Q 020346 216 SGRGKHTTRHVSLLPLSGGG----YLADTPGFNQPSL---------------LKVTKQSLAQTFPEIKEMLKANEPAKCS 276 (327)
Q Consensus 216 ~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~~l---------------~~~~~~~l~~~~~~~~~~LSgGq~q~~~ 276 (327)
.+++++|+||++.. ++.|+..+..... +.+...+..+..| ..|||||+||++
T Consensus 70 ------~~r~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~---~~LSGGqkQRva 140 (232)
T d2awna2 70 ------AERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKP---KALSGGQRQRVA 140 (232)
T ss_dssp ------GGTCEEEECSSCCC---------------------CHHHHHHHHHHHHC------------------------C
T ss_pred ------hhceeeeeccccccccchhHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCChhhhhCCh---hhCCHHHHHHHH
Confidence 23579999998743 4555554432211 1111222222333 349999999999
Q ss_pred ccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 277 FNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 277 ~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
+|+++ +++|.++++|+| ......+.++.++..
T Consensus 141 iAraL-~~~P~illlDEPts~LD~~~~~~i~~~l~~l~~ 178 (232)
T d2awna2 141 IGRTL-VAEPSVFLLDEPLSNLDAALRVQMRIEISRLHK 178 (232)
T ss_dssp HHHHH-HTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHH-hcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHH
Confidence 99999 999999999955 445555566666543
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.92 E-value=3.3e-27 Score=213.47 Aligned_cols=152 Identities=18% Similarity=0.277 Sum_probs=114.3
Q ss_pred cCCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccc
Q 020346 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (327)
Q Consensus 135 ~~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s 213 (327)
+.++.++++|++..+++++++.+ +|++++|+||||||||||+|+|.| +++|++|+|+++|+++...+
T Consensus 7 I~v~nlsk~yg~~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~G------------l~~p~sG~I~i~g~~i~~~~ 74 (239)
T d1v43a3 7 VKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAG------------LEEPTEGRIYFGDRDVTYLP 74 (239)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHT------------SSCCSEEEEEETTEECTTSC
T ss_pred EEEEEEEEEECCEEEEcceeEEECCCCEEEEECCCCChHHHHHHHHHc------------CCCCCCCEEEEcceecccCC
Confidence 45678999999999999999998 999999999999999999999999 99999999999999998766
Q ss_pred ccCCCcceeeEEEEEEEccCCC----eEEeCcccCCccccccCHh----------------HHhhhhHHHHHhcCccccc
Q 020346 214 TKSGRGKHTTRHVSLLPLSGGG----YLADTPGFNQPSLLKVTKQ----------------SLAQTFPEIKEMLKANEPA 273 (327)
Q Consensus 214 ~~~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~~l~~~~~~----------------~l~~~~~~~~~~LSgGq~q 273 (327)
.. +++++|+||+++. ++.|+..+... +..+... +..+.+|. .|||||+|
T Consensus 75 ~~-------~r~ig~v~Q~~~l~~~ltv~enl~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~LSGGq~Q 143 (239)
T d1v43a3 75 PK-------DRNISMVFQSYAVWPHMTVYENIAFPLK-IKKFPKDEIDKRVRWAAELLQIEELLNRYPA---QLSGGQRQ 143 (239)
T ss_dssp GG-------GGTEEEEEC------CCCHHHHHHTTCC---CCCHHHHHHHHHHHHHHTTCGGGTTSCTT---TCCSSCHH
T ss_pred cc-------cceEEEEeechhhcccchHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHcCChhhhcCChh---hCCHHHHH
Confidence 42 3569999998643 33344333221 1112222 22222232 39999999
Q ss_pred cccccccccccCCceEEcccH------HHHHHHHHHHHHHHHh
Q 020346 274 KCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRIR 310 (327)
Q Consensus 274 ~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~~ 310 (327)
|+++|+++ +.+|+++++|+| ......++++.++.+.
T Consensus 144 RvaiAraL-~~~P~iLllDEPts~LD~~~~~~i~~ll~~l~~~ 185 (239)
T d1v43a3 144 RVAVARAI-VVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQK 185 (239)
T ss_dssp HHHHHHHH-TTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhh-ccCCCceeecCCcccCCHHHHHHHHHHHHHHHHh
Confidence 99999999 999999999954 5666677777777543
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=99.90 E-value=1.5e-26 Score=209.34 Aligned_cols=158 Identities=15% Similarity=0.218 Sum_probs=116.5
Q ss_pred cCCceeeccCc--chhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecc
Q 020346 135 WGYEPLFCSVE--SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (327)
Q Consensus 135 ~~~~~~~~s~~--~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~ 211 (327)
+.++.++++|. +..+++++++.+ +|++++|+||||||||||+++|.| +++|++|+|+++|+++..
T Consensus 4 i~v~nlsk~y~~g~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~g------------l~~p~~G~I~~~g~~i~~ 71 (242)
T d1oxxk2 4 IIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAG------------LDVPSTGELYFDDRLVAS 71 (242)
T ss_dssp EEEEEEEEEEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHT------------SSCCSEEEEEETTEEEEE
T ss_pred EEEEeEEEEECCCCEEEEeceEEEECCCCEEEEECCCCCcHHHHHHHHHc------------CcCCCCceEEECCEEeec
Confidence 34577888884 456899999998 899999999999999999999999 999999999999999987
Q ss_pred ccccCCCcceeeEEEEEEEccCCC----eEEeCcccCCcc---------------ccccCHhHHhhhhHHHHHhcCcccc
Q 020346 212 VSTKSGRGKHTTRHVSLLPLSGGG----YLADTPGFNQPS---------------LLKVTKQSLAQTFPEIKEMLKANEP 272 (327)
Q Consensus 212 ~s~~~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~~---------------l~~~~~~~l~~~~~~~~~~LSgGq~ 272 (327)
.+.... +..+++++|+||++.. ++.|+..+.... ++.+.+.+..+.+|. .|||||+
T Consensus 72 ~~~~~~--~~~rr~ig~vfQ~~~L~p~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~p~---~LSGGqk 146 (242)
T d1oxxk2 72 NGKLIV--PPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPR---ELSGAQQ 146 (242)
T ss_dssp TTEESS--CGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGG---GSCHHHH
T ss_pred Cchhhc--chhhccceEEeccccccccccHHHHhhhhhHhhcCCHHHHHHHHHHHHhhcChHhhhhCChh---hCCHHHH
Confidence 553321 2245679999998632 444554433211 111111222233333 3999999
Q ss_pred ccccccccccccCCceEEcccH------HHHHHHHHHHHHHHHh
Q 020346 273 AKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRIR 310 (327)
Q Consensus 273 q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~~ 310 (327)
||+++|+++ +.+|.++++|+| ......+++++++...
T Consensus 147 QRvaiARaL-~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~ 189 (242)
T d1oxxk2 147 QRVALARAL-VKDPSLLLLDEPFSNLDARMRDSARALVKEVQSR 189 (242)
T ss_dssp HHHHHHHHH-TTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHH
T ss_pred hHHHHHhHH-hhcccceeecCCccCCCHHHHHHHHHHHHHHHhc
Confidence 999999999 999999999954 4666677777777544
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=99.90 E-value=3.3e-26 Score=207.03 Aligned_cols=158 Identities=15% Similarity=0.198 Sum_probs=115.6
Q ss_pred cCCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccc
Q 020346 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (327)
Q Consensus 135 ~~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s 213 (327)
+.++.++++|++..+++++++.+ +|++++|+||||||||||+++|+| +++|++|+|+++|.++...+
T Consensus 4 i~v~nl~k~yg~~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~g------------l~~p~sG~I~~~g~~i~~~~ 71 (240)
T d1g2912 4 VRLVDVWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAG------------LEEPSRGQIYIGDKLVADPE 71 (240)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHT------------SSCCSEEEEEETTEEEEEGG
T ss_pred EEEEeEEEEECCEEEEcceeeEEcCCCEEEEECCCCChHHHHHHHHhc------------CCCCCCCEEEECCEEecccc
Confidence 34678999999999999999998 999999999999999999999999 99999999999999997765
Q ss_pred ccCCCcceeeEEEEEEEccCCC----eEEeCcccCCccccccCH----------------hHHhhhhHHHHHhcCccccc
Q 020346 214 TKSGRGKHTTRHVSLLPLSGGG----YLADTPGFNQPSLLKVTK----------------QSLAQTFPEIKEMLKANEPA 273 (327)
Q Consensus 214 ~~~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~~l~~~~~----------------~~l~~~~~~~~~~LSgGq~q 273 (327)
.... .+..++.++++||++.. ++.|+..+... +..... .+..+.+| ..|||||+|
T Consensus 72 ~~~~-~~~~~r~ig~v~Q~~~L~~~ltV~eni~~~~~-~~~~~~~e~~~~v~~~l~~~~l~~~~~~~p---~~LSGGqkQ 146 (240)
T d1g2912 72 KGIF-VPPKDRDIAMVFQSYALYPHMTVYDNIAFPLK-LRKVPRQEIDQRVREVAELLGLTELLNRKP---RELSGGQRQ 146 (240)
T ss_dssp GTEE-CCGGGSSEEEECSCCCCCTTSCHHHHHHHHHH-HTTCCHHHHHHHHHHHHHHHTCGGGTTCCG---GGSCHHHHH
T ss_pred hhhh-cccccccceecccchhhcchhhhhHhhhhhHH-HcCCCHHHHHHHHHHHHHHcCChhHhcCCh---hhCCHHHHH
Confidence 4321 01124579999998632 23333222110 111111 12222222 339999999
Q ss_pred cccccccccccCCceEEcccH------HHHHHHHHHHHHHHHh
Q 020346 274 KCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRIR 310 (327)
Q Consensus 274 ~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~~ 310 (327)
|+++|+++ +.+|.++++|+| ......++++.++..+
T Consensus 147 Rv~IAraL-~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~ 188 (240)
T d1g2912 147 RVALGRAI-VRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQ 188 (240)
T ss_dssp HHHHHHHH-HTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-hcCCCEEEecCCCcccCHHHHHHHHHHHHHHHhc
Confidence 99999999 999999999955 4666666777777544
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=99.90 E-value=2.1e-26 Score=206.87 Aligned_cols=150 Identities=16% Similarity=0.263 Sum_probs=111.9
Q ss_pred CceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccccc
Q 020346 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (327)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~ 215 (327)
++.++++|++ .+++++||.+ +|++++|+||||||||||+|+|+| +.+|++|+|+++|+++...+.
T Consensus 4 v~nlsk~y~~-~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~G------------l~~p~sG~I~~~G~~i~~~~~- 69 (229)
T d3d31a2 4 IESLSRKWKN-FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAG------------FHVPDSGRILLDGKDVTDLSP- 69 (229)
T ss_dssp EEEEEEECSS-CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHT------------SSCCSEEEEEETTEECTTSCH-
T ss_pred EEEEEEEeCC-EEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhc------------CcCCCCCEEEEccEeccccch-
Confidence 4678888976 4899999998 999999999999999999999999 999999999999999977653
Q ss_pred CCCcceeeEEEEEEEccCCC----eEEeCcccCCcc------------ccccCHhHHhhhhHHHHHhcCccccccccccc
Q 020346 216 SGRGKHTTRHVSLLPLSGGG----YLADTPGFNQPS------------LLKVTKQSLAQTFPEIKEMLKANEPAKCSFNN 279 (327)
Q Consensus 216 ~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~~------------l~~~~~~~l~~~~~~~~~~LSgGq~q~~~~~~ 279 (327)
.+++++|+||++.. ++.|+..+.... ++.+...+..+..+ ..|||||+||+++|+
T Consensus 70 ------~~r~ig~v~Q~~~l~~~~tV~enl~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---~~LSGG~~QRvaiAr 140 (229)
T d3d31a2 70 ------EKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNP---LTLSGGEQQRVALAR 140 (229)
T ss_dssp ------HHHTCEEECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCG---GGSCHHHHHHHHHHH
T ss_pred ------hHhcceeeccccccCccccHHHHHHHHHhhccccHHHHHHHHHHHhcchhhHhCCh---hhCCHHHhcchhhhh
Confidence 34579999998633 333433322110 11111122222222 339999999999999
Q ss_pred cccccCCceEEcccH------HHHHHHHHHHHHHHHh
Q 020346 280 CLHLGEPGCVVKGDW------ERYQYYFQLLDEIRIR 310 (327)
Q Consensus 280 ~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~~ 310 (327)
++ +++|+++++|+| .-....++++.++.+.
T Consensus 141 aL-~~~P~iLllDEPts~LD~~~~~~i~~~l~~l~~~ 176 (229)
T d3d31a2 141 AL-VTNPKILLLDEPLSALDPRTQENAREMLSVLHKK 176 (229)
T ss_dssp HT-TSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHH
T ss_pred hh-hccCCceeecCCCcCCCHHHHHHHHHHHHHHHhc
Confidence 99 999999999954 4556667777777544
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=99.90 E-value=1.5e-25 Score=203.07 Aligned_cols=155 Identities=17% Similarity=0.245 Sum_probs=113.9
Q ss_pred cCCceeeccCc--chhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecc
Q 020346 135 WGYEPLFCSVE--SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (327)
Q Consensus 135 ~~~~~~~~s~~--~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~ 211 (327)
+.|+.++++|. ++.+|+++++.+ +|++++|+|+||||||||+++|+| +++|++|+|.++|+++..
T Consensus 2 I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~g------------l~~p~~G~I~i~g~~i~~ 69 (241)
T d2pmka1 2 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQR------------FYIPENGQVLIDGHDLAL 69 (241)
T ss_dssp EEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTT------------SSCCSEEEEEETTEETTT
T ss_pred eEEEEEEEEeCCCCcceEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHh------------cCCCCCCEEEECCEEecc
Confidence 34678999994 456899999998 999999999999999999999999 999999999999999988
Q ss_pred ccccCCCcceeeEEEEEEEccC---CCeEEeCcccCCccccccCHh---HHhhhhHHH--------------HHhcCccc
Q 020346 212 VSTKSGRGKHTTRHVSLLPLSG---GGYLADTPGFNQPSLLKVTKQ---SLAQTFPEI--------------KEMLKANE 271 (327)
Q Consensus 212 ~s~~~~~g~~tt~~i~~v~q~~---~~~i~Dtpg~~~~~l~~~~~~---~l~~~~~~~--------------~~~LSgGq 271 (327)
.+... .+++++|+||++ ++++.|+..+..+....-... ........+ ...|||||
T Consensus 70 ~~~~~-----lr~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq 144 (241)
T d2pmka1 70 ADPNW-----LRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQ 144 (241)
T ss_dssp SCHHH-----HHHHEEEECSSCCCTTSBHHHHHCTTSTTCCHHHHHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHH
T ss_pred cchhh-----hhceEEEEecccccCCccccccccccCccccHHHHHHHHHHHhhHHHHHhhhcchhhhcCCCCCccCHHH
Confidence 87554 678899999975 345555554443221110000 000011101 12499999
Q ss_pred cccccccccccccCCceEEcccH------HHHHHHHHHHHHH
Q 020346 272 PAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEI 307 (327)
Q Consensus 272 ~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~ 307 (327)
+||+++|+++ +.+|.++|+||| .......+.+.++
T Consensus 145 ~QRvalARal-~~~p~ililDEpts~LD~~~~~~i~~~l~~l 185 (241)
T d2pmka1 145 RQRIAIARAL-VNNPKILIFDEATSALDYESEHVIMRNMHKI 185 (241)
T ss_dssp HHHHHHHHHH-TTCCSEEEECCCCSCCCHHHHHHHHHHHHHH
T ss_pred HHHHhhhhhh-hcccchhhhhCCccccCHHHHHHHHHHHHHH
Confidence 9999999999 999999999955 3444444555555
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=99.89 E-value=2.3e-25 Score=203.78 Aligned_cols=161 Identities=16% Similarity=0.156 Sum_probs=117.1
Q ss_pred cCCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccc
Q 020346 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (327)
Q Consensus 135 ~~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s 213 (327)
+.++.++++|++..++++++|.+ +|++++|+||||||||||+++|+| +++|++|+|+++|+++...+
T Consensus 3 Lev~nl~k~yg~~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~G------------l~~p~~G~I~~~G~~i~~~~ 70 (258)
T d1b0ua_ 3 LHVIDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINF------------LEKPSEGAIIVNGQNINLVR 70 (258)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTT------------SSCCSEEEEEETTEECCEEE
T ss_pred EEEEEEEEEECCEEEEcceeeEEcCCCEEEEECCCCCcHHHHHHHHHc------------CccCCCCCEEECCEEeccCC
Confidence 44678899999999999999998 999999999999999999999999 99999999999999998776
Q ss_pred ccCCCc--------ceeeEEEEEEEccCCC----eEEeCcccCCcc----------------ccccCHhH-HhhhhHHHH
Q 020346 214 TKSGRG--------KHTTRHVSLLPLSGGG----YLADTPGFNQPS----------------LLKVTKQS-LAQTFPEIK 264 (327)
Q Consensus 214 ~~~~~g--------~~tt~~i~~v~q~~~~----~i~Dtpg~~~~~----------------l~~~~~~~-l~~~~~~~~ 264 (327)
...... +..+++++|+||+++. ++.|+..+.... ++.+.... ..+.+|
T Consensus 71 ~~~~~~~~~~~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~p--- 147 (258)
T d1b0ua_ 71 DKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYP--- 147 (258)
T ss_dssp CTTSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCG---
T ss_pred ccchhcccccHhHHHHHhcceEEEEechhhccchhcchhhhhhHHHhcCCCHHHHHHHHHHHHHHcCCchhhhccCc---
Confidence 543211 1245679999998643 233332221000 01111111 112223
Q ss_pred HhcCccccccccccccccccCCceEEcccH------HHHHHHHHHHHHHHHhH
Q 020346 265 EMLKANEPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRIRE 311 (327)
Q Consensus 265 ~~LSgGq~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~~~ 311 (327)
..|||||+||+.+|+++ +.+|+++++|+| ......+++++++++++
T Consensus 148 ~~LSGG~~QRv~iAraL-~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g 199 (258)
T d1b0ua_ 148 VHLSGGQQQRVSIARAL-AMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEG 199 (258)
T ss_dssp GGSCHHHHHHHHHHHHH-HTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTT
T ss_pred ccccHHHHHHHHHHHHH-hcCCCEEEeccccccCCHHHHHHHHHhhhhhcccC
Confidence 33999999999999999 999999999965 35555567778876543
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.89 E-value=1.9e-25 Score=203.65 Aligned_cols=142 Identities=17% Similarity=0.274 Sum_probs=106.2
Q ss_pred cCCceeeccCcch---hhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeec
Q 020346 135 WGYEPLFCSVESK---LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (327)
Q Consensus 135 ~~~~~~~~s~~~~---~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~ 210 (327)
+.++.++++|.+. .+|+++++.+ +|++++||||||||||||+++|+| +++|++|+|+++|+++.
T Consensus 12 I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~g------------l~~p~~G~I~i~g~~i~ 79 (251)
T d1jj7a_ 12 VQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQN------------LYQPTGGQLLLDGKPLP 79 (251)
T ss_dssp EEEEEEEECCTTSTTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTT------------SSCCSEEEEEETTEEGG
T ss_pred EEEEEEEEECCCCCCCEeEeceEEEEcCCCEEEEECCCCCcHHHHHHHHhc------------ccCCCcCEEEECCEecc
Confidence 5678899999653 4899999998 999999999999999999999999 99999999999999998
Q ss_pred cccccCCCcceeeEEEEEEEccCC---CeEEeCcccCCccc---cccCHh-HHhhhhHHH--------------HHhcCc
Q 020346 211 EVSTKSGRGKHTTRHVSLLPLSGG---GYLADTPGFNQPSL---LKVTKQ-SLAQTFPEI--------------KEMLKA 269 (327)
Q Consensus 211 ~~s~~~~~g~~tt~~i~~v~q~~~---~~i~Dtpg~~~~~l---~~~~~~-~l~~~~~~~--------------~~~LSg 269 (327)
..+... .+++++++||++. .++.++..+..... ..+... ........+ ...|||
T Consensus 80 ~~~~~~-----~r~~i~~v~Q~~~lf~~tv~eni~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~i~~~~~~LSG 154 (251)
T d1jj7a_ 80 QYEHRY-----LHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSG 154 (251)
T ss_dssp GBCHHH-----HHHHEEEECSSCCCCSSBHHHHHHCSCSSCCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCCSSCSSSCH
T ss_pred hhhhHH-----HHHHhhhccccccccCcchhhhhhhhhcccchHHHHHHHHHHHHHHHHHHhccccchhhHhccCccCCh
Confidence 877543 6788999999862 34444443331110 000000 000000011 113999
Q ss_pred cccccccccccccccCCceEEcccH
Q 020346 270 NEPAKCSFNNCLHLGEPGCVVKGDW 294 (327)
Q Consensus 270 Gq~q~~~~~~~~h~~ep~~~v~~~~ 294 (327)
||+||+++|+++ +.+|.++|+|||
T Consensus 155 GqkQRvaiARal-~~~p~ililDEp 178 (251)
T d1jj7a_ 155 GQRQAVALARAL-IRKPCVLILDDA 178 (251)
T ss_dssp HHHHHHHHHHHH-TTCCSEEEEEST
T ss_pred hHceEEEEeecc-ccCCcEEEecCc
Confidence 999999999999 999999999966
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=99.89 E-value=2.2e-26 Score=208.20 Aligned_cols=155 Identities=17% Similarity=0.237 Sum_probs=112.0
Q ss_pred CceeeccCcch----hhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecc
Q 020346 137 YEPLFCSVESK----LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (327)
Q Consensus 137 ~~~~~~s~~~~----~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~ 211 (327)
++.++++|..+ .+++++++.+ +|++++|+||||||||||+++|.| +.+|++|+|.++|+++..
T Consensus 4 v~nlsk~y~~~~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~G------------l~~p~sG~I~~~g~~i~~ 71 (240)
T d3dhwc1 4 LSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNL------------LERPTEGSVLVDGQELTT 71 (240)
T ss_dssp EEEEEEEEECSSCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTT------------SSCCSEEEEEETTEEECT
T ss_pred EEeEEEEeCCCCeeEEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHcC------------CccccCCceEEcCeEeee
Confidence 46677777643 5799999998 899999999999999999999999 999999999999999987
Q ss_pred ccccCCCcceeeEEEEEEEccCCC----eEEeCcccCCccccccCHh----------------HHhhhhHHHHHhcCccc
Q 020346 212 VSTKSGRGKHTTRHVSLLPLSGGG----YLADTPGFNQPSLLKVTKQ----------------SLAQTFPEIKEMLKANE 271 (327)
Q Consensus 212 ~s~~~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~~l~~~~~~----------------~l~~~~~~~~~~LSgGq 271 (327)
.+.+.. ...++.++++||+++. ++.|+..+.. .+..+... +..+.+|. .|||||
T Consensus 72 ~~~~~~--~~~rr~ig~VfQ~~~l~~~~tv~eni~~~l-~~~~~~~~~~~~~v~~~L~~vgL~~~~~~~~~---~LSGG~ 145 (240)
T d3dhwc1 72 LSESEL--TKARRQIGMIFQHFNLLSSRTVFGNVALPL-ELDNTPKDEVKRRVTELLSLVGLGDKHDSYPS---NLSGGQ 145 (240)
T ss_dssp TCHHHH--HHHHHHEEECCSSCCCCTTSBHHHHHHHHH-HTTTCCTTHHHHHHHHHHHHHSTTTTTSSCBS---CCCHHH
T ss_pred CChhhh--hhhhccccccccccccCCCccHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHcCCchhhhCChh---hCCHHH
Confidence 664321 1134679999998643 2333322110 01111111 11122222 399999
Q ss_pred cccccccccccccCCceEEcccH------HHHHHHHHHHHHHHHh
Q 020346 272 PAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRIR 310 (327)
Q Consensus 272 ~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~~ 310 (327)
+||+++|+++ +.+|.+++.|+| ......++++.++...
T Consensus 146 ~QRvaiAraL-~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~ 189 (240)
T d3dhwc1 146 KQRVAIARAL-ASNPKVLLCDEATSALDPATTRSILELLKDINRR 189 (240)
T ss_dssp HHHHHHHHHH-HTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhh-ccCCCeEEeccccccCCHHHhhHHHHHHHHHHhc
Confidence 9999999999 999999999965 4666677777777554
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.89 E-value=2.3e-25 Score=200.26 Aligned_cols=157 Identities=13% Similarity=0.198 Sum_probs=112.3
Q ss_pred CceeeccCcch----hhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecc
Q 020346 137 YEPLFCSVESK----LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (327)
Q Consensus 137 ~~~~~~s~~~~----~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~ 211 (327)
++.++++|... .++++++|.+ +|++++|+||||||||||+++|+| +++|++|+|+++|.++..
T Consensus 4 i~nlsk~y~~~~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~g------------l~~p~sG~I~~~g~~i~~ 71 (230)
T d1l2ta_ 4 LKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGC------------LDKPTEGEVYIDNIKTND 71 (230)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTT------------SSCCSEEEEEETTEECTT
T ss_pred EEeEEEEeCCCCeeEEEEeceEEEEcCCCEEEEECCCCCCcchhhHhccC------------CCCCCcceeEECCEEcCc
Confidence 46677788643 3799999998 899999999999999999999999 999999999999999988
Q ss_pred ccccCCCcceeeEEEEEEEccCCC----eEEeCcccCCc--cccccCHh-------------H----HhhhhHHHHHhcC
Q 020346 212 VSTKSGRGKHTTRHVSLLPLSGGG----YLADTPGFNQP--SLLKVTKQ-------------S----LAQTFPEIKEMLK 268 (327)
Q Consensus 212 ~s~~~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~--~l~~~~~~-------------~----l~~~~~~~~~~LS 268 (327)
.+.+.. .+..+++++|+||+++. ++.|+..+... ........ + +...+|. .||
T Consensus 72 ~~~~~~-~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~p~---~LS 147 (230)
T d1l2ta_ 72 LDDDEL-TKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPN---QLS 147 (230)
T ss_dssp CCHHHH-HHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGG---GSC
T ss_pred CChhhc-chhhcceEEEEecchhhCcCccHHHHHhHHHHHhccCCCCHHHHHHHHHHHHHhhchhhhhhcCChh---hCC
Confidence 764321 01123569999998632 33343222100 00011111 1 1122333 399
Q ss_pred ccccccccccccccccCCceEEcccH------HHHHHHHHHHHHHHHh
Q 020346 269 ANEPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRIR 310 (327)
Q Consensus 269 gGq~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~~ 310 (327)
|||+||+++|+++ +.+|+++++|+| ...+...+++.++.+.
T Consensus 148 GGqkQRvaIAraL-~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~ 194 (230)
T d1l2ta_ 148 GGQQQRVAIARAL-ANNPPIILADQPTGALDSKTGEKIMQLLKKLNEE 194 (230)
T ss_dssp HHHHHHHHHHHHH-TTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhh-hcCCCEEEecCCccccCHHHHHHHHHHHHHHHHh
Confidence 9999999999999 999999999954 5667777777777543
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=99.89 E-value=7.9e-26 Score=205.09 Aligned_cols=153 Identities=14% Similarity=0.268 Sum_probs=111.8
Q ss_pred CCceeeccCcc-hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccc
Q 020346 136 GYEPLFCSVES-KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (327)
Q Consensus 136 ~~~~~~~s~~~-~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s 213 (327)
.++.++|+|.+ +.+|+++++.+ +|++++|+||||||||||+++|+| +++|++|+|.++|+++..++
T Consensus 3 e~knvsf~Y~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g------------l~~p~~G~I~i~g~~i~~~~ 70 (242)
T d1mv5a_ 3 SARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLER------------FYQPTAGEITIDGQPIDNIS 70 (242)
T ss_dssp EEEEEEECSSSSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTT------------SSCCSBSCEEETTEESTTTS
T ss_pred EEEEEEEECCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHH------------hhCCCCCEEEECCEEecccc
Confidence 46789999954 57999999998 999999999999999999999999 99999999999999999887
Q ss_pred ccCCCcceeeEEEEEEEccC---CCeEEeCcccCCccccccCHhHHhh------------hhHHH--------HHhcCcc
Q 020346 214 TKSGRGKHTTRHVSLLPLSG---GGYLADTPGFNQPSLLKVTKQSLAQ------------TFPEI--------KEMLKAN 270 (327)
Q Consensus 214 ~~~~~g~~tt~~i~~v~q~~---~~~i~Dtpg~~~~~l~~~~~~~l~~------------~~~~~--------~~~LSgG 270 (327)
... .+++++|+||++ .+++.++..+.... ......+.. ..|.- ...||||
T Consensus 71 ~~~-----~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGG 143 (242)
T d1mv5a_ 71 LEN-----WRSQIGFVSQDSAIMAGTIRENLTYGLEG--DYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGG 143 (242)
T ss_dssp CSC-----CTTTCCEECCSSCCCCEEHHHHTTSCTTS--CSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHH
T ss_pred HHH-----HHhheEEEccccccCCcchhhheeccccc--ccchhhHHHHHHHHHhhhhhccCcccccccccCCCCCCCHH
Confidence 654 667899999986 23444554332111 001111110 01110 1138999
Q ss_pred ccccccccccccccCCceEEcccHH------HHHHHHHHHHHHH
Q 020346 271 EPAKCSFNNCLHLGEPGCVVKGDWE------RYQYYFQLLDEIR 308 (327)
Q Consensus 271 q~q~~~~~~~~h~~ep~~~v~~~~~------r~~~~~~ll~e~~ 308 (327)
|+||+++|+++ +.+|.++|+|||. ......++++++.
T Consensus 144 qkQRv~iARal-~~~p~ililDEpts~LD~~~~~~i~~~l~~l~ 186 (242)
T d1mv5a_ 144 QRQRLAIARAF-LRNPKILMLDEATASLDSESESMVQKALDSLM 186 (242)
T ss_dssp HHHHHHHHHHH-HHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHH-hcCCCEEEecCCccccCHHHHHHHHHHHHHHc
Confidence 99999999999 9999999999653 3333445555553
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=99.89 E-value=3.4e-25 Score=200.60 Aligned_cols=159 Identities=14% Similarity=0.204 Sum_probs=115.1
Q ss_pred CCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccc
Q 020346 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (327)
Q Consensus 136 ~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~ 214 (327)
.++.++++|++..++++++|.+ +|++++|+||||||||||+|+|+| +++|++|+|.++|+++...+.
T Consensus 8 ev~~l~k~yg~~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~G------------l~~p~~G~I~~~G~~i~~~~~ 75 (240)
T d1ji0a_ 8 EVQSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAG------------LVRAQKGKIIFNGQDITNKPA 75 (240)
T ss_dssp EEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTT------------SSCCSEEEEEETTEECTTCCH
T ss_pred EEeeEEEEECCEEEEeeeeEEECCCCEEEEECCCCCcHHHHHHHHhC------------CCCCCccEEEecccccccccH
Confidence 4578899999999999999998 999999999999999999999999 999999999999999987654
Q ss_pred cCCCcceeeEEEEEEEccCC----CeEEeCcccCCccccccC-----HhHHhhhhHHHH-------HhcCcccccccccc
Q 020346 215 KSGRGKHTTRHVSLLPLSGG----GYLADTPGFNQPSLLKVT-----KQSLAQTFPEIK-------EMLKANEPAKCSFN 278 (327)
Q Consensus 215 ~~~~g~~tt~~i~~v~q~~~----~~i~Dtpg~~~~~l~~~~-----~~~l~~~~~~~~-------~~LSgGq~q~~~~~ 278 (327)
... .+..++++||+.. .++.++..+.......-. ...+...++.+. ..|||||+||+.++
T Consensus 76 ~~~----~r~gi~~~~q~~~l~~~ltv~en~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~LSGG~~Qrv~iA 151 (240)
T d1ji0a_ 76 HVI----NRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIG 151 (240)
T ss_dssp HHH----HHTTEEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHH
T ss_pred HHH----HHhcccccCcccccCCcccHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhChHHHHhCchhhCCHHHHHHHHHH
Confidence 321 2345889998753 233333222211110000 111222222222 23999999999999
Q ss_pred ccccccCCceEEcccH------HHHHHHHHHHHHHHHhH
Q 020346 279 NCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRIRE 311 (327)
Q Consensus 279 ~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~~~ 311 (327)
+++ +++|+++++|+| .-.....++++++++.+
T Consensus 152 raL-~~~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~~g 189 (240)
T d1ji0a_ 152 RAL-MSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEG 189 (240)
T ss_dssp HHH-TTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTT
T ss_pred HHH-HhCCCEeeecCCCcCCCHHHHHHHHHHHHHHHhCC
Confidence 999 999999999955 45555666777776654
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.88 E-value=2.4e-25 Score=203.29 Aligned_cols=159 Identities=14% Similarity=0.182 Sum_probs=114.7
Q ss_pred CCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccc
Q 020346 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (327)
Q Consensus 136 ~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~ 214 (327)
..+.++++|+..++++++++.+ +|++++|+||||||||||+|+|+| +++|++|+|+++|+++...+.
T Consensus 6 ~v~nlsk~yg~~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~G------------l~~p~~G~I~~~g~~i~~~~~ 73 (254)
T d1g6ha_ 6 RTENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITG------------FLKADEGRVYFENKDITNKEP 73 (254)
T ss_dssp EEEEEEEEETTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTT------------SSCCSEEEEEETTEECTTCCH
T ss_pred EEEEEEEEECCeEEEcceEEEECCCCEEEEECCCCCcHHHHHHHHHC------------CCcCCCcEEEECCEeccchhH
Confidence 4577889999999999999998 999999999999999999999999 999999999999999987665
Q ss_pred cCCCcceeeEEEEEEEccCC----CeEEeCcccCCcc------------ccccCHh----HH---------hhhhHHHHH
Q 020346 215 KSGRGKHTTRHVSLLPLSGG----GYLADTPGFNQPS------------LLKVTKQ----SL---------AQTFPEIKE 265 (327)
Q Consensus 215 ~~~~g~~tt~~i~~v~q~~~----~~i~Dtpg~~~~~------------l~~~~~~----~l---------~~~~~~~~~ 265 (327)
... ....++++||++. .++.|+..+.... ....... .. .........
T Consensus 74 ~~~----~~~gi~~v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 149 (254)
T d1g6ha_ 74 AEL----YHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAG 149 (254)
T ss_dssp HHH----HHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGG
T ss_pred HHH----HHhcCCccCCccccCCCCeeeeeeeehhhhccccchhhhhhhcccccHHHHHHHHHHHHHhcCcchhccCchh
Confidence 432 3445999999763 3444443321100 0000000 00 011111133
Q ss_pred hcCccccccccccccccccCCceEEcccH------HHHHHHHHHHHHHHHhH
Q 020346 266 MLKANEPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRIRE 311 (327)
Q Consensus 266 ~LSgGq~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~~~ 311 (327)
.|||||+||+.+++++ +.+|.++++|+| .......++++++++++
T Consensus 150 ~LSgG~~Qrv~iAraL-~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g 200 (254)
T d1g6ha_ 150 ELSGGQMKLVEIGRAL-MTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKG 200 (254)
T ss_dssp GSCHHHHHHHHHHHHH-HTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTT
T ss_pred hCCcHHHHHHHHHHHH-HhCcCchhhcCCcccCCHHHHHHHHHHHHHHHHCC
Confidence 4999999999999999 899999999965 34455566667776543
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=99.87 E-value=1.4e-24 Score=196.23 Aligned_cols=156 Identities=13% Similarity=0.149 Sum_probs=113.6
Q ss_pred CCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccc
Q 020346 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (327)
Q Consensus 136 ~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~ 214 (327)
.++.+.++|++..+++++++.+ +|++++|+||||||||||+|+|+| +++|++|+|.++|+++...+.
T Consensus 4 ~v~nl~k~yg~~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G------------~~~p~~G~i~i~G~~i~~~~~ 71 (238)
T d1vpla_ 4 VVKDLRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIIST------------LIKPSSGIVTVFGKNVVEEPH 71 (238)
T ss_dssp EEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTT------------SSCCSEEEEEETTEETTTCHH
T ss_pred EEEeEEEEECCEEEEccceeEEcCCCEEEEECCCCCCHHHHHHHHhc------------CCCCCCCEEEECcEecccChH
Confidence 3578899999999999999998 999999999999999999999999 999999999999999876543
Q ss_pred cCCCcceeeEEEEEEEccCCC----eEEeCcccCCccccccCHhHHhhhh-------------HHHHHhcCccccccccc
Q 020346 215 KSGRGKHTTRHVSLLPLSGGG----YLADTPGFNQPSLLKVTKQSLAQTF-------------PEIKEMLKANEPAKCSF 277 (327)
Q Consensus 215 ~~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~~l~~~~~~~l~~~~-------------~~~~~~LSgGq~q~~~~ 277 (327)
. .++.++|+||..+. ++.|+..+... +......+..... ......|||||+||+.+
T Consensus 72 ~------~~~~i~~vpq~~~~~~~ltv~e~l~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lSgG~~qrv~i 144 (238)
T d1vpla_ 72 E------VRKLISYLPEEAGAYRNMQGIEYLRFVAG-FYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLI 144 (238)
T ss_dssp H------HHTTEEEECTTCCCCTTSBHHHHHHHHHH-HHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHH
T ss_pred H------HHhhEeEeeeccccCCCccHHHHHHHHHH-hcCCCHHHHHHHHHHHHHhCCCHHHHhhhhhhCCHHHHHHHHH
Confidence 2 45679999997532 22222211110 0011111111111 11123499999999999
Q ss_pred cccccccCCceEEcccH------HHHHHHHHHHHHHHHhH
Q 020346 278 NNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRIRE 311 (327)
Q Consensus 278 ~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~~~ 311 (327)
++++ +++|.++++|+| .......++++++.+.+
T Consensus 145 A~al-~~~p~illLDEPt~gLD~~~~~~i~~~i~~~~~~g 183 (238)
T d1vpla_ 145 ARAL-MVNPRLAILDEPTSGLDVLNAREVRKILKQASQEG 183 (238)
T ss_dssp HHHH-TTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTT
T ss_pred HHHH-hcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcC
Confidence 9999 999999999955 34555677888776554
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.87 E-value=1.8e-24 Score=197.37 Aligned_cols=155 Identities=17% Similarity=0.235 Sum_probs=113.9
Q ss_pred cCCceeeccCcc--hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecc
Q 020346 135 WGYEPLFCSVES--KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (327)
Q Consensus 135 ~~~~~~~~s~~~--~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~ 211 (327)
+.++.++|+|.+ ..+|+++++.+ +|++++|+|+||||||||+++|+| +++|++|+|.++|.++..
T Consensus 17 I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g------------l~~p~~G~I~i~g~~i~~ 84 (255)
T d2hyda1 17 IDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPR------------FYDVTSGQILIDGHNIKD 84 (255)
T ss_dssp EEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTT------------SSCCSEEEEEETTEEGGG
T ss_pred EEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCcHHHHHHHHHh------------cCCccccccccCCEEccc
Confidence 567899999965 56999999998 999999999999999999999999 999999999999999988
Q ss_pred ccccCCCcceeeEEEEEEEccC---CCeEEeCcccCCccccccCHh---HHhhhhHHH--------------HHhcCccc
Q 020346 212 VSTKSGRGKHTTRHVSLLPLSG---GGYLADTPGFNQPSLLKVTKQ---SLAQTFPEI--------------KEMLKANE 271 (327)
Q Consensus 212 ~s~~~~~g~~tt~~i~~v~q~~---~~~i~Dtpg~~~~~l~~~~~~---~l~~~~~~~--------------~~~LSgGq 271 (327)
++... .+++++|+||++ .+++.|+..+..+....-+.. +.......+ ...|||||
T Consensus 85 ~~~~~-----lr~~i~~v~Q~~~lf~~Ti~eNi~~g~~~~~~~~~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq 159 (255)
T d2hyda1 85 FLTGS-----LRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQ 159 (255)
T ss_dssp SCHHH-----HHHTEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHH
T ss_pred CCHHH-----hhheeeeeeccccCCCCCHHHHHhccCcCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCcCHHH
Confidence 87554 678899999975 345555554433221100000 000000111 12399999
Q ss_pred cccccccccccccCCceEEcccH------HHHHHHHHHHHHH
Q 020346 272 PAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEI 307 (327)
Q Consensus 272 ~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~ 307 (327)
+||+++|+++ +.+|.++|+||| ...+...+.++++
T Consensus 160 ~QRi~iARal-~~~p~ililDEpts~LD~~t~~~i~~~l~~l 200 (255)
T d2hyda1 160 KQRLSIARIF-LNNPPILILDEATSALDLESESIIQEALDVL 200 (255)
T ss_dssp HHHHHHHHHH-HHCCSEEEEESTTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-hcCCCEEEEeCccccCCHHHHHHHHHHHHHH
Confidence 9999999999 999999999965 3444444445444
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.87 E-value=3.1e-24 Score=195.66 Aligned_cols=154 Identities=14% Similarity=0.253 Sum_probs=112.5
Q ss_pred cCCceeeccCcc--hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecc
Q 020346 135 WGYEPLFCSVES--KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (327)
Q Consensus 135 ~~~~~~~~s~~~--~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~ 211 (327)
+.++.++++|.+ ..+|+++++.+ +|++++||||||||||||+++|+| +++|++|+|.++|.++..
T Consensus 14 I~~~nvsf~Y~~~~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~g------------l~~p~~G~I~i~g~~i~~ 81 (253)
T d3b60a1 14 LEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITR------------FYDIDEGHILMDGHDLRE 81 (253)
T ss_dssp EEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTT------------TTCCSEEEEEETTEETTT
T ss_pred EEEEEEEEEeCCCCCceeeceEEEEcCCCEEEEECCCCChHHHHHHHHhc------------ccCCCccEEEECCcccch
Confidence 567889999964 35899999998 899999999999999999999999 999999999999999988
Q ss_pred ccccCCCcceeeEEEEEEEccCC---CeEEeCcccCCccccccCHhHHh------------hhhHH--------HHHhcC
Q 020346 212 VSTKSGRGKHTTRHVSLLPLSGG---GYLADTPGFNQPSLLKVTKQSLA------------QTFPE--------IKEMLK 268 (327)
Q Consensus 212 ~s~~~~~g~~tt~~i~~v~q~~~---~~i~Dtpg~~~~~l~~~~~~~l~------------~~~~~--------~~~~LS 268 (327)
++... .+..++|+||++. .++.++..+... .....+++. ..+|+ -...||
T Consensus 82 ~~~~~-----~r~~i~~v~Q~~~l~~~ti~~n~~~~~~--~~~~~~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~~~~LS 154 (253)
T d3b60a1 82 YTLAS-----LRNQVALVSQNVHLFNDTVANNIAYART--EEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLS 154 (253)
T ss_dssp BCHHH-----HHHTEEEECSSCCCCSSBHHHHHHTTTT--SCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSC
T ss_pred hhhhh-----hhheEEEEeeccccCCcchhhhhhhcCc--ccCCHHHHHHHHHHHhHHHHHHhccccchhhhcCCCCCcC
Confidence 87654 5677999999752 233333222211 111111111 11111 011399
Q ss_pred ccccccccccccccccCCceEEcccH------HHHHHHHHHHHHHH
Q 020346 269 ANEPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIR 308 (327)
Q Consensus 269 gGq~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~ 308 (327)
|||+||+++|+++ +.+|.++|+|+| .......++++++.
T Consensus 155 GGqkQRvaiARal-~~~p~ililDEpts~LD~~~~~~i~~~l~~l~ 199 (253)
T d3b60a1 155 GGQRQRIAIARAL-LRDSPILILDEATSALDTESERAIQAALDELQ 199 (253)
T ss_dssp HHHHHHHHHHHHH-HHCCSEEEEETTTSSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-hcCCCEEEeccccccCCHHHHHHHHHHHHHhc
Confidence 9999999999999 999999999965 34444555565553
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.86 E-value=7.4e-24 Score=191.20 Aligned_cols=136 Identities=14% Similarity=0.230 Sum_probs=101.0
Q ss_pred HHHhhcCCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcceeeEEEEEEEc
Q 020346 152 SLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPL 231 (327)
Q Consensus 152 ~l~~~l~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~tt~~i~~v~q 231 (327)
++++.+.+++++|+||||||||||+++|+| +++|++|+|+++|+++...+.. ++.++|+||
T Consensus 17 ~vs~~~~~e~~~liGpnGaGKSTll~~i~G------------l~~p~~G~I~~~G~~i~~~~~~-------~r~ig~v~Q 77 (240)
T d2onka1 17 NVDFEMGRDYCVLLGPTGAGKSVFLELIAG------------IVKPDRGEVRLNGADITPLPPE-------RRGIGFVPQ 77 (240)
T ss_dssp EEEEEECSSEEEEECCTTSSHHHHHHHHHT------------SSCCSEEEEEETTEECTTSCTT-------TSCCBCCCS
T ss_pred EEEEEeCCEEEEEECCCCChHHHHHHHHHc------------CCCCCceEEEECCEECCcCCHH-------HcCceeecc
Confidence 577777668999999999999999999999 9999999999999999887643 356999999
Q ss_pred cCC----CeEEeCcccCCccc-------------cccCHhHHhhhhHHHHHhcCccccccccccccccccCCceEEcccH
Q 020346 232 SGG----GYLADTPGFNQPSL-------------LKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDW 294 (327)
Q Consensus 232 ~~~----~~i~Dtpg~~~~~l-------------~~~~~~~l~~~~~~~~~~LSgGq~q~~~~~~~~h~~ep~~~v~~~~ 294 (327)
++. .++.|+..+..... +.+...+..+..| ..|||||+||+++|+++ +++|.++++|+|
T Consensus 78 ~~~l~~~ltV~enl~~~l~~~~~~~~~~~v~~~l~~~gl~~~~~~~~---~~LSGG~kQRvaiAral-~~~P~illlDEP 153 (240)
T d2onka1 78 DYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKP---ARLSGGERQRVALARAL-VIQPRLLLLDEP 153 (240)
T ss_dssp SCCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTTTCCG---GGSCHHHHHHHHHHHHH-TTCCSSBEEEST
T ss_pred chhhcccchhhHhhhhhhcccCHHHHHHHHHHHHHhcCcHhhhhCCh---hhCCHHHHHHHHHHHHH-hccCCceEecCc
Confidence 853 34555544432111 1111112222222 23999999999999999 999999999954
Q ss_pred ------HHHHHHHHHHHHHHHh
Q 020346 295 ------ERYQYYFQLLDEIRIR 310 (327)
Q Consensus 295 ------~r~~~~~~ll~e~~~~ 310 (327)
......++++.++...
T Consensus 154 ts~LD~~~~~~i~~~i~~l~~~ 175 (240)
T d2onka1 154 LSAVDLKTKGVLMEELRFVQRE 175 (240)
T ss_dssp TSSCCHHHHHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHHHh
Confidence 5666677777777554
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.84 E-value=1.2e-22 Score=178.98 Aligned_cols=136 Identities=17% Similarity=0.254 Sum_probs=96.6
Q ss_pred cCCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccc
Q 020346 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (327)
Q Consensus 135 ~~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s 213 (327)
+.++.++++|. +++++++++.+ +|++++|+||||||||||+|+|+| +++|++|+|.++|+++....
T Consensus 3 lev~~ls~~y~-~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~g------------l~~p~~G~I~~~g~~i~~~~ 69 (200)
T d1sgwa_ 3 LEIRDLSVGYD-KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTIST------------YLKPLKGEIIYNGVPITKVK 69 (200)
T ss_dssp EEEEEEEEESS-SEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTT------------SSCCSEEEEEETTEEGGGGG
T ss_pred EEEEEEEEEeC-CeEEeceEEEEcCCCEEEEECCCCChHHHHHHHHhc------------ccccCCCEEEECCEehhHhc
Confidence 34677888995 46899999998 999999999999999999999999 99999999999999987543
Q ss_pred ccCCCcceeeEEEEEEEccC----CCeEEeCcccCCccc-cccCHhHHhhhhH--------HHHHhcCcccccccccccc
Q 020346 214 TKSGRGKHTTRHVSLLPLSG----GGYLADTPGFNQPSL-LKVTKQSLAQTFP--------EIKEMLKANEPAKCSFNNC 280 (327)
Q Consensus 214 ~~~~~g~~tt~~i~~v~q~~----~~~i~Dtpg~~~~~l-~~~~~~~l~~~~~--------~~~~~LSgGq~q~~~~~~~ 280 (327)
..++++||.. ..++.|...+..... ......++.+.+. +-...|||||+||+.++++
T Consensus 70 ----------~~i~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LSgG~~qrv~ia~a 139 (200)
T d1sgwa_ 70 ----------GKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDLKKKLGELSQGTIRRVQLAST 139 (200)
T ss_dssp ----------GGEEEECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCCTTSBGGGSCHHHHHHHHHHHH
T ss_pred ----------CcEEEEeecccCCCCcCHHHHHHHHHHhcCCccCHHHHHHHHHHcCCcccccccCcCCCcHHHHHHHHHH
Confidence 2467888753 112212211100000 0111111111111 1123499999999999999
Q ss_pred ccccCCceEEcccH
Q 020346 281 LHLGEPGCVVKGDW 294 (327)
Q Consensus 281 ~h~~ep~~~v~~~~ 294 (327)
+ +.+|+++|+|||
T Consensus 140 l-~~~~~llllDEP 152 (200)
T d1sgwa_ 140 L-LVNAEIYVLDDP 152 (200)
T ss_dssp T-TSCCSEEEEEST
T ss_pred H-hcCCCEEEEcCc
Confidence 8 999999999976
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.76 E-value=5.6e-21 Score=176.41 Aligned_cols=120 Identities=17% Similarity=0.144 Sum_probs=85.8
Q ss_pred CcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCccee
Q 020346 144 VESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHT 222 (327)
Q Consensus 144 ~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~t 222 (327)
+..+++|+++++.+ +|++++|+||||||||||+++|+| +++|++|+|.++|+
T Consensus 46 ~~g~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~G------------l~~p~~G~I~~~g~--------------- 98 (281)
T d1r0wa_ 46 LVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILG------------ELEASEGIIKHSGR--------------- 98 (281)
T ss_dssp HTTCEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHT------------SSCCSEEEEECCSC---------------
T ss_pred CCCCeEEeCeEEEEcCCCEEEEECCCCChHHHHHHHHhC------------CCcCCCcEEEECCE---------------
Confidence 34567999999998 999999999999999999999999 99999999998872
Q ss_pred eEEEEEEEccCC---CeEEeCcccCCccc--------cccCHhHHhhhhHHH--------HHhcCccccccccccccccc
Q 020346 223 TRHVSLLPLSGG---GYLADTPGFNQPSL--------LKVTKQSLAQTFPEI--------KEMLKANEPAKCSFNNCLHL 283 (327)
Q Consensus 223 t~~i~~v~q~~~---~~i~Dtpg~~~~~l--------~~~~~~~l~~~~~~~--------~~~LSgGq~q~~~~~~~~h~ 283 (327)
++|+||.+. .++.++..+....- ...........+++. ...|||||+||+++|+++ +
T Consensus 99 ---i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARaL-~ 174 (281)
T d1r0wa_ 99 ---VSFCSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAV-Y 174 (281)
T ss_dssp ---EEEECSSCCCCSEEHHHHHTTTSCCCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHHH-H
T ss_pred ---EEEEeccccccCceeeccccccccccchHHHHHHHHHHhHHHHHhchhhhhhhhhhhccCCCHHHHHHHHHHHHH-H
Confidence 677888642 23444443322110 000000000111111 113899999999999999 9
Q ss_pred cCCceEEcccH
Q 020346 284 GEPGCVVKGDW 294 (327)
Q Consensus 284 ~ep~~~v~~~~ 294 (327)
.+|.++|+|+|
T Consensus 175 ~~p~illLDEP 185 (281)
T d1r0wa_ 175 KDADLYLLDSP 185 (281)
T ss_dssp SCCSEEEEESC
T ss_pred hCccchhhcCc
Confidence 99999999965
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=99.76 E-value=2.1e-20 Score=167.89 Aligned_cols=142 Identities=18% Similarity=0.176 Sum_probs=95.0
Q ss_pred hHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcceeeEEEE
Q 020346 149 GLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVS 227 (327)
Q Consensus 149 ~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~tt~~i~ 227 (327)
.+++|++.+ +|++++|+||||||||||+|+|+| +. |++|+|.++|+++...+... ...+.+
T Consensus 14 ~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~G------------l~-~~~G~I~~~g~~i~~~~~~~-----~~~~~~ 75 (231)
T d1l7vc_ 14 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAG------------MT-SGKGSIQFAGQPLEAWSATK-----LALHRA 75 (231)
T ss_dssp TSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHT------------SC-CCSSEEEESSSBGGGSCHHH-----HHHHEE
T ss_pred eecCEEEEEcCCCEEEEECCCCCcHHHHHHHHhC------------CC-CCceEEEECCEECCcCCHHH-----HHhhce
Confidence 588899998 999999999999999999999999 65 68999999999987765432 344567
Q ss_pred EEEccCCCeEEeC----cccCCccccccCHhHHhh---------hhHHHHHhcCcccccccccccccccc-------CCc
Q 020346 228 LLPLSGGGYLADT----PGFNQPSLLKVTKQSLAQ---------TFPEIKEMLKANEPAKCSFNNCLHLG-------EPG 287 (327)
Q Consensus 228 ~v~q~~~~~i~Dt----pg~~~~~l~~~~~~~l~~---------~~~~~~~~LSgGq~q~~~~~~~~h~~-------ep~ 287 (327)
+++|........+ ..+... .....+.+.. ........|||||+||+.+++++ +. +|+
T Consensus 76 ~~~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~LSgG~~Qrv~iA~al-~~~~p~~~p~p~ 152 (231)
T d1l7vc_ 76 YLSQQQTPPFATPVWHYLTLHQH--DKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVV-LQITPQANPAGQ 152 (231)
T ss_dssp EECSCCCCCSSCBHHHHHHHHCS--CTTCHHHHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHH-HHHCTTTCTTCC
T ss_pred eeeccccCCccccHHHHhhhccc--hhhHHHHHHHHHHhcCCHhHhCcChhhcCHHHHHHHHHHHHH-HhhCcccCCCCC
Confidence 7877632111000 000000 0000111111 01111224999999999999987 54 679
Q ss_pred eEEcccH------HHHHHHHHHHHHHHHhH
Q 020346 288 CVVKGDW------ERYQYYFQLLDEIRIRE 311 (327)
Q Consensus 288 ~~v~~~~------~r~~~~~~ll~e~~~~~ 311 (327)
++++|+| .......+++++++..+
T Consensus 153 llllDEPt~gLD~~~~~~i~~~i~~l~~~g 182 (231)
T d1l7vc_ 153 LLLLDEPMNSLDVAQQSALDKILSALCQQG 182 (231)
T ss_dssp EEEESSCSTTCCHHHHHHHHHHHHHHHHTT
T ss_pred EEEEcCCCCCCCHHHHHHHHHHHHHHHhCC
Confidence 9999954 46666778888886654
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=99.75 E-value=2.7e-18 Score=157.27 Aligned_cols=143 Identities=24% Similarity=0.383 Sum_probs=103.7
Q ss_pred cccccccEEEEEeecCCCCCC-hHHHHHHHHHHHhcCCCEEEEeecCCCCcHHHHHHHHhhhhhcCCceeeccCcchhhH
Q 020346 72 PPVANVDHLLLLFSMDQPKLE-PFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVESKLGL 150 (327)
Q Consensus 72 ~~~anvD~lliv~~~~~p~~~-~~~l~r~L~~a~~~~~~~~ivlnK~Dl~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l 150 (327)
..+..+|+++.|.++..|..+ ...+++++ .++|.++|+||+||++.+....|..+|+..++..+++++.+....
T Consensus 11 ~~i~~~DvIl~V~DaR~P~ss~~~~l~~~~-----~~Kp~IlVlNK~DLv~~~~~~~w~~~f~~~~~~~i~isa~~~~~~ 85 (273)
T d1puja_ 11 EKLKLIDIVYELVDARIPMSSRNPMIEDIL-----KNKPRIMLLNKADKADAAVTQQWKEHFENQGIRSLSINSVNGQGL 85 (273)
T ss_dssp HHGGGCSEEEEEEETTSTTTTSCHHHHHHC-----SSSCEEEEEECGGGSCHHHHHHHHHHHHTTTCCEEECCTTTCTTG
T ss_pred HHHHhCCEEEEEEECCCCCCCCCHHHHHHH-----cCCCeEEEEECccCCchHHHHHHHHHHHhcCCccceeecccCCCc
Confidence 357899999999999998654 33566766 388999999999999999889999999888888888887654332
Q ss_pred HHHHh--------h---c-------CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccc
Q 020346 151 DSLLQ--------R---L-------RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV 212 (327)
Q Consensus 151 ~~l~~--------~---l-------~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~ 212 (327)
..+.. . . .+-.++|||.||||||||+|+|.|.. ...+
T Consensus 86 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~vvG~PNvGKSsliN~L~~~~-------------------------~~~~ 140 (273)
T d1puja_ 86 NQIVPASKEILQEKFDRMRAKGVKPRAIRALIIGIPNVGKSTLINRLAKKN-------------------------IAKT 140 (273)
T ss_dssp GGHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEESTTSSHHHHHHHHHTSC-------------------------CC--
T ss_pred cccchhhhhhhhhhhhhhhhccCCCCceEEEEEecCccchhhhhhhhhccc-------------------------eEEE
Confidence 21111 0 0 24579999999999999999999943 2334
Q ss_pred cccCCCcceeeEEEEEEEccCCCeEEeCcccCCccc
Q 020346 213 STKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSL 248 (327)
Q Consensus 213 s~~~~~g~~tt~~i~~v~q~~~~~i~Dtpg~~~~~l 248 (327)
+..+| +|++++++..+.+.+++||||+..+..
T Consensus 141 ~~~pG----~Tr~~~~i~~~~~~~l~DTPGi~~p~~ 172 (273)
T d1puja_ 141 GDRPG----ITTSQQWVKVGKELELLDTPGILWPKF 172 (273)
T ss_dssp --------------CCEEETTTEEEEECCCCCCSCC
T ss_pred CCccc----ccccceEEECCCCeEEecCCCccccCC
Confidence 44555 889999999888999999999987654
|
| >d1t9ha1 b.40.4.5 (A:1-67) Probable GTPase EngC (YjeQ), N-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: Probable GTPase EngC (YjeQ), N-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=99.52 E-value=7.4e-15 Score=106.34 Aligned_cols=64 Identities=20% Similarity=0.268 Sum_probs=55.7
Q ss_pred CeeEEEecCCCCceeccC--CCCcEEEEEEcccccccCCCcccCcEEEEceecccCCceEEeeecccc
Q 020346 1 MRVIVQQSEPSRTSDCND--KTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRS 66 (327)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~vGD~V~~~~~~~~~~~~~i~~i~~R~ 66 (327)
++|+|+|++.|+|+|..+ ++|..+.|++||+||+++..|+|||||.++..+ ++.|+|++|+||.
T Consensus 2 ~~G~Vik~~~~~y~V~~e~~~~g~~~~C~~RGk~r~~~~~p~VGD~V~~~~~~--~~~g~I~~I~pRt 67 (67)
T d1t9ha1 2 PEGKIIKALSGFYYVLDESEDSDKVIQCRGRGIFRKNKITPLVGDYVVYQAEN--DKEGYLMEIKERT 67 (67)
T ss_dssp CEEEEEEEETTEEEEEECSSSSCEEEEEESCSSCCSCCCCCCBTCEEEEECCT--TSCEEEEEECCCS
T ss_pred CCEEEEEEECCEEEEEecccCCCcEEEEEEceeEecCCCccCcCcEEEEEEcc--CCeEEEEEEecCC
Confidence 489999999777888765 368899999999999888889999999999754 6689999999994
|
| >d1u0la1 b.40.4.5 (A:3-68) Probable GTPase EngC (YjeQ), N-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: Probable GTPase EngC (YjeQ), N-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.51 E-value=1.1e-14 Score=105.22 Aligned_cols=64 Identities=28% Similarity=0.442 Sum_probs=57.5
Q ss_pred CeeEEEecCCCCceeccCCCCcEEEEEEcccccccCCCcccCcEEEEceecccCCceEEeeecccc
Q 020346 1 MRVIVQQSEPSRTSDCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRS 66 (327)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vGD~V~~~~~~~~~~~~~i~~i~~R~ 66 (327)
++|+|++++.++|+|.++++|..+.|.+||+|++.+..|+|||+|.+++.+ ++.|+|++|+||+
T Consensus 3 ~~G~Vi~~~~~~y~V~~~e~g~~~~c~~rG~lr~~~~~~~VGD~V~~~~~~--~~~g~I~~I~pRk 66 (66)
T d1u0la1 3 RRGIVVSFHSNMVTVEDEETGERILCKLRGKFRLQNLKIYVGDRVEYTPDE--TGSGVIENVLHRK 66 (66)
T ss_dssp EEEEEEEEETTEEEEEETTTCCEEEEEECGGGTTTTCCCCTTCEEEEECCC--SSSEEEEEECCCS
T ss_pred eeEEEEEEECCEEEEEECCCCcEEEEEeeccccccCCccccCCEEEEEECC--CCeEEEEEEcCCC
Confidence 489999999777789887789999999999999888899999999998764 6789999999996
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=98.83 E-value=5.2e-10 Score=93.00 Aligned_cols=106 Identities=12% Similarity=0.113 Sum_probs=60.9
Q ss_pred EEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcceeeEEEEEEEccCCC-eEEe
Q 020346 161 TTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGG-YLAD 239 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~tt~~i~~v~q~~~~-~i~D 239 (327)
.++|+||||||||||++.|+| .++|+.|.+...+.+....... ............ ....
T Consensus 2 ki~I~G~~G~GKSTLl~~i~~------------~l~~~~g~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~ 61 (178)
T d1ye8a1 2 KIIITGEPGVGKTTLVKKIVE------------RLGKRAIGFWTEEVRDPETKKR--------TGFRIITTEGKKKIFSS 61 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHH------------HHGGGEEEEEEEEEC------C--------CEEEEEETTCCEEEEEE
T ss_pred EEEEECCCCcHHHHHHHHHHh------------cCCCCcceEEECCcchHHHHHh--------hhhhhhhhhHHHHHHhh
Confidence 589999999999999999999 8999999999887665443221 111111121111 1111
Q ss_pred CcccCCccccccCHhHHhhhhHHHHHhcCccccccccccccccccCCceEEcccH
Q 020346 240 TPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDW 294 (327)
Q Consensus 240 tpg~~~~~l~~~~~~~l~~~~~~~~~~LSgGq~q~~~~~~~~h~~ep~~~v~~~~ 294 (327)
.............. ..+. -.+|+|+.++..++.+. ...|.+++.|++
T Consensus 62 ~~~~~~~~~~~~~~------~~~~-~~~~~~~~~~~~l~~~~-~~~~~vlllDE~ 108 (178)
T d1ye8a1 62 KFFTSKKLVGSYGV------NVQY-FEELAIPILERAYREAK-KDRRKVIIIDEI 108 (178)
T ss_dssp TTCCCSSEETTEEE------CHHH-HHHHHHHHHHHHHHHHH-HCTTCEEEECCC
T ss_pred hhhhhhhhhhhhhc------Ccch-hhhhhhhhHHHHHHHHH-hcCCCceeecCC
Confidence 11111111111110 0111 12678888999888766 889999998864
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.54 E-value=2.1e-08 Score=83.57 Aligned_cols=22 Identities=45% Similarity=0.631 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHcCC
Q 020346 161 TTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g~ 182 (327)
+++|+|+||||||||+|.|.|.
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~ 23 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGK 23 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999983
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=98.39 E-value=7.7e-08 Score=85.87 Aligned_cols=25 Identities=36% Similarity=0.597 Sum_probs=22.4
Q ss_pred CCEEEEEcCCCCCHHHHHHHHcCCC
Q 020346 159 DQTTVIVGPSGVGKSSLINALRSSP 183 (327)
Q Consensus 159 g~~v~lvG~sG~GKSTLln~L~g~~ 183 (327)
.-+++|+|.+|||||||+|.|+|..
T Consensus 32 ~l~I~LvG~tg~GKSSliN~ilg~~ 56 (257)
T d1h65a_ 32 SLTILVMGKGGVGKSSTVNSIIGER 56 (257)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CcEEEEECCCCCcHHHHHHHHhCCC
Confidence 3489999999999999999999954
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=98.29 E-value=1.1e-07 Score=79.45 Aligned_cols=21 Identities=38% Similarity=0.556 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHcC
Q 020346 161 TTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g 181 (327)
.|||+|++|||||||+|.|.|
T Consensus 3 ~VaiiG~~nvGKSSLin~L~~ 23 (185)
T d1lnza2 3 DVGLVGFPSVGKSTLLSVVSS 23 (185)
T ss_dssp CEEEESSTTSSHHHHHHHSEE
T ss_pred eEEEECCCCCCHHHHHHHHhC
Confidence 389999999999999999998
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=98.26 E-value=3e-07 Score=76.47 Aligned_cols=21 Identities=38% Similarity=0.539 Sum_probs=20.0
Q ss_pred EEEEcCCCCCHHHHHHHHcCC
Q 020346 162 TVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 162 v~lvG~sG~GKSTLln~L~g~ 182 (327)
++|+|.+|||||||+|.|.|.
T Consensus 4 VaivG~~nvGKSTLin~L~~~ 24 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRA 24 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSS
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 899999999999999999984
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=98.20 E-value=9.9e-07 Score=74.19 Aligned_cols=22 Identities=45% Similarity=0.628 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHHHcCC
Q 020346 161 TTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g~ 182 (327)
.++|+|++|||||||+|.|.|.
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~ 46 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHhcCC
Confidence 6999999999999999999983
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=98.18 E-value=4.4e-07 Score=75.38 Aligned_cols=22 Identities=45% Similarity=0.614 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHHHcCC
Q 020346 161 TTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g~ 182 (327)
+|+|+|.+|||||||+|.|+|.
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~ 28 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGV 28 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6999999999999999999994
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.17 E-value=6.2e-07 Score=84.95 Aligned_cols=24 Identities=42% Similarity=0.616 Sum_probs=21.9
Q ss_pred CCEEEEEcCCCCCHHHHHHHHcCC
Q 020346 159 DQTTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 159 g~~v~lvG~sG~GKSTLln~L~g~ 182 (327)
.-.++|+|.||||||||+|+|+|.
T Consensus 56 ~l~Iai~G~~n~GKSSLiNaL~G~ 79 (400)
T d1tq4a_ 56 VLNVAVTGETGSGKSSFINTLRGI 79 (400)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTC
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 457999999999999999999994
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=98.11 E-value=1.6e-06 Score=70.24 Aligned_cols=24 Identities=46% Similarity=0.613 Sum_probs=21.9
Q ss_pred CCEEEEEcCCCCCHHHHHHHHcCC
Q 020346 159 DQTTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 159 g~~v~lvG~sG~GKSTLln~L~g~ 182 (327)
|-.++|+|++|||||||+|.|.|.
T Consensus 1 ~~kI~lvG~~nvGKSsLin~l~~~ 24 (161)
T d2gj8a1 1 GMKVVIAGRPNAGKSSLLNALAGR 24 (161)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 457999999999999999999984
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.08 E-value=4e-07 Score=73.82 Aligned_cols=22 Identities=50% Similarity=0.706 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHcCC
Q 020346 161 TTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g~ 182 (327)
.++|+|.+|||||||+|+|.|.
T Consensus 2 kI~liG~~n~GKSSLin~l~g~ 23 (160)
T d1xzpa2 2 RMVIVGKPNVGKSTLLNRLLNE 23 (160)
T ss_dssp EEEEECCHHHHTCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999983
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=97.97 E-value=3.9e-06 Score=68.87 Aligned_cols=22 Identities=50% Similarity=0.693 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHcCC
Q 020346 161 TTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g~ 182 (327)
+++|+|++|||||||+|.|+|.
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~ 23 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKK 23 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999983
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=97.89 E-value=3.9e-06 Score=69.56 Aligned_cols=24 Identities=42% Similarity=0.578 Sum_probs=21.7
Q ss_pred CCEEEEEcCCCCCHHHHHHHHcCC
Q 020346 159 DQTTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 159 g~~v~lvG~sG~GKSTLln~L~g~ 182 (327)
+-.++|+|.+|||||||+|+|+|.
T Consensus 8 ~~kV~iiG~~~~GKSTLin~l~~~ 31 (186)
T d1mkya2 8 AIKVAIVGRPNVGKSTLFNAILNK 31 (186)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Confidence 347999999999999999999984
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.82 E-value=8.9e-06 Score=66.66 Aligned_cols=22 Identities=45% Similarity=0.617 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHcCC
Q 020346 161 TTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g~ 182 (327)
+|+|+|.+|||||||+|+|.|.
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4889999999999999999983
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.79 E-value=3.8e-06 Score=70.59 Aligned_cols=22 Identities=36% Similarity=0.717 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHcCC
Q 020346 161 TTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g~ 182 (327)
+++|+|++|||||||+|.|.+.
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~ 26 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTD 26 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7899999999999999999983
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=97.79 E-value=2.1e-05 Score=64.21 Aligned_cols=23 Identities=35% Similarity=0.475 Sum_probs=21.2
Q ss_pred CEEEEEcCCCCCHHHHHHHHcCC
Q 020346 160 QTTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 160 ~~v~lvG~sG~GKSTLln~L~g~ 182 (327)
-.++|+|++|||||||+|+|.+.
T Consensus 17 ~~I~lvG~~NvGKSSL~n~L~~~ 39 (188)
T d1puia_ 17 IEVAFAGRSNAGKSSALNTLTNQ 39 (188)
T ss_dssp EEEEEEECTTSSHHHHHTTTCCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46999999999999999999983
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=97.71 E-value=1.8e-05 Score=64.12 Aligned_cols=23 Identities=13% Similarity=0.436 Sum_probs=20.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHcCC
Q 020346 160 QTTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 160 ~~v~lvG~sG~GKSTLln~L~g~ 182 (327)
-.++|+|++|||||||+|.|.+.
T Consensus 3 ~ki~ivG~~~~GKTsLi~~l~~~ 25 (165)
T d1ksha_ 3 LRLLMLGLDNAGKTTILKKFNGE 25 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTC
T ss_pred EEEEEECCCCCCHHHHHHHHcCC
Confidence 36899999999999999999984
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.68 E-value=1.6e-05 Score=63.05 Aligned_cols=22 Identities=23% Similarity=0.560 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHcCC
Q 020346 161 TTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g~ 182 (327)
.++|+|++|||||||+|.|.+.
T Consensus 2 KI~liG~~nvGKSSLln~l~~~ 23 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKND 23 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5889999999999999999984
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=97.68 E-value=1.4e-05 Score=63.63 Aligned_cols=21 Identities=24% Similarity=0.532 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHcC
Q 020346 161 TTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g 181 (327)
.++|+|++|||||||+|.|.+
T Consensus 2 kivlvG~~~vGKSsLi~~l~~ 22 (160)
T d1r8sa_ 2 RILMVGLDAAGKTTILYKLKL 22 (160)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 588999999999999999987
|
| >d1ah9a_ b.40.4.5 (A:) Translational initiation factor 1, IF1 {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: Translational initiation factor 1, IF1 species: Escherichia coli [TaxId: 562]
Probab=97.63 E-value=4.4e-05 Score=54.47 Aligned_cols=60 Identities=23% Similarity=0.264 Sum_probs=47.5
Q ss_pred CeeEEEecCCCCceeccCCCCcEEEEEEcccccccCCCcccCcEEEEceecccCCceEEe
Q 020346 1 MRVIVQQSEPSRTSDCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIE 60 (327)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vGD~V~~~~~~~~~~~~~i~ 60 (327)
|.|+|.+.-|+..+-...++|.+..|.++|++++....+.+||.|.++..+.+...|.|.
T Consensus 8 ~~G~V~e~lg~~~f~V~l~ng~~~~a~i~Gkmrk~ri~i~~GD~V~Vel~pyd~~kgrIi 67 (71)
T d1ah9a_ 8 MQGTVLETLPNTMFRVELENGHVVTAHISGKMRKNYIRILTGDKVTVELTPYDLSKGRIV 67 (71)
T ss_dssp CCEEEEEECSSSEEEEEETTSCEEEEEECSSGGGTTCCCCTTCEECCEECSSCTTEEEEC
T ss_pred EEEEEEEEcCCCEEEEEeCCCCEEEEEccchhheeEEEecCCCEEEEEECccCCCcEEEE
Confidence 568999988765533334689999999999999878899999999999877666666553
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.56 E-value=4.2e-05 Score=62.43 Aligned_cols=21 Identities=33% Similarity=0.550 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHcC
Q 020346 161 TTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g 181 (327)
.++|+|.+|||||||++.|.+
T Consensus 7 Ki~vvG~~~vGKTsLi~~l~~ 27 (169)
T d3raba_ 7 KILIIGNSSVGKTSFLFRYAD 27 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHc
Confidence 489999999999999999876
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.53 E-value=1.9e-05 Score=65.64 Aligned_cols=23 Identities=43% Similarity=0.800 Sum_probs=21.8
Q ss_pred CCEEEEEcCCCCCHHHHHHHHcC
Q 020346 159 DQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 159 g~~v~lvG~sG~GKSTLln~L~g 181 (327)
|+.++|+||||||||||++.|..
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~ 24 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRE 24 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHh
Confidence 78999999999999999999976
|
| >d1hr0w_ b.40.4.5 (W:) Translational initiation factor 1, IF1 {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: Translational initiation factor 1, IF1 species: Escherichia coli [TaxId: 562]
Probab=97.52 E-value=1.8e-05 Score=56.61 Aligned_cols=59 Identities=27% Similarity=0.378 Sum_probs=47.1
Q ss_pred CeeEEEecCCCCceeccCCCCcEEEEEEcccccccCCCcccCcEEEEceecccCCceEE
Q 020346 1 MRVIVQQSEPSRTSDCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMI 59 (327)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vGD~V~~~~~~~~~~~~~i 59 (327)
|.|+|++.-|+..+-...++|.+..|.++|++++.+..+.+||.|.++..+.+...|.|
T Consensus 9 ~~G~V~~~l~~~~f~V~l~ng~~~~a~i~GkmRk~ri~i~~GD~V~Vel~pyd~~kgrI 67 (71)
T d1hr0w_ 9 TEGVVTEALPNATFRVKLDSGPEILAYISGKMRMHYIRILPGDRVVVEITPYDPTRGRI 67 (71)
T ss_dssp CEEECCCCCTTTBCCCEESSSCBCCCEECHHHHHTCCCCCTTCEEEEECCTTCTTCCEE
T ss_pred EEEEEEEECCCCEEEEEECCCCEEEEEecchhheeeEEecCCCEEEEEECccCCCcEEE
Confidence 57899999876553333458888999999999988889999999999987766666655
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=97.50 E-value=2e-05 Score=63.41 Aligned_cols=21 Identities=29% Similarity=0.396 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHcC
Q 020346 161 TTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g 181 (327)
+++|+|+||||||||++.|..
T Consensus 4 vi~itG~~GSGKTTL~~~L~~ 24 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIP 24 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 689999999999999999985
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=97.50 E-value=2.2e-05 Score=71.01 Aligned_cols=22 Identities=32% Similarity=0.425 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHcCC
Q 020346 161 TTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g~ 182 (327)
.+||||.|+||||||+|+|.|.
T Consensus 2 ~v~lvG~pn~GKStlfn~lt~~ 23 (319)
T d1wxqa1 2 EIGVVGKPNVGKSTFFSAATLV 23 (319)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred cEeEECCCCCCHHHHHHHHHCC
Confidence 4899999999999999999994
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=97.49 E-value=2.9e-05 Score=69.96 Aligned_cols=50 Identities=26% Similarity=0.272 Sum_probs=31.9
Q ss_pred CCEEEEEcCCCCCHHHHHHHHcCCCCC-CCcccccccccccccceeecceee
Q 020346 159 DQTTVIVGPSGVGKSSLINALRSSPHA-SDAADVDNWFEPILGSKWFEDQRV 209 (327)
Q Consensus 159 g~~v~lvG~sG~GKSTLln~L~g~~~~-~~~~~~~~~~~p~~G~i~~~g~~v 209 (327)
+-.+||||.|+||||||+|+|++.... ....++ +..+|..|.+.+.+.+.
T Consensus 10 ~~kiGivG~Pn~GKSTlfnalT~~~~~~~anypf-tTi~pn~g~v~v~d~r~ 60 (296)
T d1ni3a1 10 NLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPY-ATIDPEEAKVAVPDERF 60 (296)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSS-CCCCTTEEEEEECCHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHCCCCCCcCCCCc-cCccCCeEEEeccccch
Confidence 457999999999999999999974211 000111 12356667766554433
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.48 E-value=4.4e-05 Score=61.95 Aligned_cols=21 Identities=38% Similarity=0.661 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHcC
Q 020346 161 TTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g 181 (327)
.++++|.+|||||||++.+..
T Consensus 4 Ki~vvG~~~vGKTSli~~l~~ 24 (166)
T d1g16a_ 4 KILLIGDSGVGKSCLLVRFVE 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 489999999999999999887
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.46 E-value=4.9e-05 Score=63.96 Aligned_cols=23 Identities=26% Similarity=0.391 Sum_probs=21.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHcCC
Q 020346 160 QTTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 160 ~~v~lvG~sG~GKSTLln~L~g~ 182 (327)
+.|+|+|++|||||||+|.|.+.
T Consensus 1 k~V~ivG~~~~GKTsLl~~l~~~ 23 (207)
T d2fh5b1 1 RAVLFVGLCDSGKTLLFVRLLTG 23 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHcC
Confidence 47999999999999999999983
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.43 E-value=7.7e-05 Score=61.26 Aligned_cols=21 Identities=48% Similarity=0.736 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHcC
Q 020346 161 TTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g 181 (327)
.++++|.+|||||||+|.|.+
T Consensus 9 Ki~vvG~~~vGKTsli~~l~~ 29 (177)
T d1x3sa1 9 KILIIGESGVGKSSLLLRFTD 29 (177)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999999987
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=97.42 E-value=2.1e-05 Score=63.59 Aligned_cols=23 Identities=39% Similarity=0.583 Sum_probs=21.2
Q ss_pred CCEEEEEcCCCCCHHHHHHHHcC
Q 020346 159 DQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 159 g~~v~lvG~sG~GKSTLln~L~g 181 (327)
-+.++|+|++|||||||.+.|+.
T Consensus 7 ~K~I~i~G~~GsGKTTla~~La~ 29 (192)
T d1lw7a2 7 AKTVAILGGESSGKSVLVNKLAA 29 (192)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36799999999999999999986
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.37 E-value=0.0001 Score=60.40 Aligned_cols=21 Identities=43% Similarity=0.779 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHcC
Q 020346 161 TTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g 181 (327)
.++|+|.+|||||||+|.+.+
T Consensus 6 Ki~vvG~~~vGKTsLi~~~~~ 26 (175)
T d2f9la1 6 KVVLIGDSGVGKSNLLSRFTR 26 (175)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 489999999999999999877
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=97.37 E-value=3.8e-05 Score=63.65 Aligned_cols=23 Identities=26% Similarity=0.263 Sum_probs=21.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHcCC
Q 020346 160 QTTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 160 ~~v~lvG~sG~GKSTLln~L~g~ 182 (327)
-.+||+|++|||||||+|+|++.
T Consensus 6 inIaiiG~~naGKSTL~n~L~~~ 28 (179)
T d1wb1a4 6 INLGIFGHIDHGKTTLSKVLTEI 28 (179)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTT
T ss_pred EEEEEEeCCCCcHHHHHHHHHHh
Confidence 36999999999999999999983
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=97.36 E-value=3.1e-05 Score=61.83 Aligned_cols=23 Identities=26% Similarity=0.567 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHHHcCCC
Q 020346 161 TTVIVGPSGVGKSSLINALRSSP 183 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g~~ 183 (327)
.++|||.+|||||||+|.+.+..
T Consensus 7 kI~ivG~~~vGKSSLi~~~~~~~ 29 (169)
T d1upta_ 7 RILILGLDGAGKTTILYRLQVGE 29 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998843
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=97.35 E-value=4.5e-05 Score=61.89 Aligned_cols=25 Identities=24% Similarity=0.531 Sum_probs=22.3
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcCC
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g~ 182 (327)
+.-+++|||++|||||||+|.|.+.
T Consensus 12 k~~kI~lvG~~~vGKTsLl~~l~~~ 36 (186)
T d1f6ba_ 12 KTGKLVFLGLDNAGKTTLLHMLKDD 36 (186)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4457999999999999999999984
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=97.34 E-value=4.7e-05 Score=65.11 Aligned_cols=24 Identities=46% Similarity=0.664 Sum_probs=22.2
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcC
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g 181 (327)
+|..++|+||||||||||++.|+.
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~ 24 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLK 24 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHh
Confidence 488999999999999999999975
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.33 E-value=0.00011 Score=59.75 Aligned_cols=21 Identities=33% Similarity=0.727 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHcC
Q 020346 161 TTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g 181 (327)
.++|+|.+|||||||++.+.+
T Consensus 7 Ki~lvG~~~vGKTsLi~~l~~ 27 (171)
T d2ew1a1 7 KIVLIGNAGVGKTCLVRRFTQ 27 (171)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999999987
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.33 E-value=0.0001 Score=61.58 Aligned_cols=21 Identities=38% Similarity=0.667 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHcC
Q 020346 161 TTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g 181 (327)
.++|+|++|||||||++.+.+
T Consensus 8 KivvvG~~~vGKTsli~~l~~ 28 (194)
T d2bcgy1 8 KLLLIGNSGVGKSCLLLRFSD 28 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHhh
Confidence 489999999999999999886
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.31 E-value=5e-05 Score=61.33 Aligned_cols=25 Identities=28% Similarity=0.454 Sum_probs=22.9
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcCC
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g~ 182 (327)
.|+.++|.|+|||||||+.+.|...
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~ 27 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANL 27 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999999873
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.31 E-value=0.00011 Score=59.97 Aligned_cols=21 Identities=29% Similarity=0.619 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHcC
Q 020346 161 TTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g 181 (327)
.++|+|.+|||||||+|.+.+
T Consensus 7 KI~lvG~~~vGKTsll~~~~~ 27 (174)
T d2bmea1 7 KFLVIGNAGTGKSCLLHQFIE 27 (174)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 489999999999999999876
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=97.29 E-value=8e-05 Score=66.40 Aligned_cols=21 Identities=43% Similarity=0.642 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHcC
Q 020346 161 TTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g 181 (327)
.++|+|+.|+|||||+.+|+.
T Consensus 4 Nv~iiGh~~~GKTtL~e~ll~ 24 (267)
T d2dy1a2 4 TVALVGHAGSGKTTLTEALLY 24 (267)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHHH
Confidence 589999999999999999854
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=97.29 E-value=0.00011 Score=59.79 Aligned_cols=23 Identities=26% Similarity=0.514 Sum_probs=21.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHcCC
Q 020346 160 QTTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 160 ~~v~lvG~sG~GKSTLln~L~g~ 182 (327)
-.++|+|++|||||||+|.|.+.
T Consensus 17 ~kI~vvG~~~vGKSsLi~~l~~~ 39 (176)
T d1fzqa_ 17 VRILLLGLDNAGKTTLLKQLASE 39 (176)
T ss_dssp EEEEEEESTTSSHHHHHHHHCCS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 47999999999999999999883
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.28 E-value=0.00012 Score=59.17 Aligned_cols=21 Identities=43% Similarity=0.610 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHcC
Q 020346 161 TTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g 181 (327)
.++|+|.+|||||||+|.+.+
T Consensus 4 Kv~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 4 KMVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 489999999999999998885
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=97.27 E-value=6.1e-05 Score=61.01 Aligned_cols=23 Identities=22% Similarity=0.411 Sum_probs=21.0
Q ss_pred CCEEEEEcCCCCCHHHHHHHHcC
Q 020346 159 DQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 159 g~~v~lvG~sG~GKSTLln~L~g 181 (327)
+++++|.|++||||||+++.|..
T Consensus 1 ~kiI~i~G~~GsGKsT~~~~L~~ 23 (190)
T d1khta_ 1 NKVVVVTGVPGVGSTTSSQLAMD 23 (190)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 47899999999999999999975
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=97.26 E-value=6.2e-05 Score=60.61 Aligned_cols=24 Identities=25% Similarity=0.361 Sum_probs=22.3
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcC
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g 181 (327)
+|.++.|+|+|||||||+-+.|..
T Consensus 5 ~g~~I~l~G~~GsGKTTia~~La~ 28 (183)
T d1m8pa3 5 QGFTIFLTGYMNSGKDAIARALQV 28 (183)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 688999999999999999999985
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=97.24 E-value=5.9e-05 Score=67.16 Aligned_cols=49 Identities=33% Similarity=0.321 Sum_probs=30.7
Q ss_pred CEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceee
Q 020346 160 QTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRV 209 (327)
Q Consensus 160 ~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v 209 (327)
-.+||||-|+||||||+|+|++........++ +...|.-|.+.+.+...
T Consensus 3 ~~~GivG~Pn~GKSTlf~~lt~~~~~~~~ypf-~ti~pn~gvv~v~d~r~ 51 (278)
T d1jala1 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPF-CTIEPNTGVVPMPDPRL 51 (278)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC------CC-CCCCCCSSEEECCCHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHCCCCccccCCC-CCCCCceEEEecccHhH
Confidence 47999999999999999999973311000011 23456667666554433
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=97.24 E-value=0.00011 Score=62.69 Aligned_cols=21 Identities=29% Similarity=0.359 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHcC
Q 020346 161 TTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g 181 (327)
.++++|..++|||||++.|+.
T Consensus 5 ni~iiGhvd~GKSTL~~~Ll~ 25 (204)
T d2c78a3 5 NVGTIGHVDHGKTTLTAALTY 25 (204)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCCcHHHHHHHHHH
Confidence 589999999999999999974
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.23 E-value=0.00018 Score=57.94 Aligned_cols=21 Identities=38% Similarity=0.555 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHcC
Q 020346 161 TTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g 181 (327)
.++|+|.+|||||||+|.+.+
T Consensus 2 Kv~vvG~~~vGKTsLi~r~~~ 22 (164)
T d1yzqa1 2 KLVFLGEQSVGKTSLITRFMY 22 (164)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999999986
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.23 E-value=0.00017 Score=58.32 Aligned_cols=21 Identities=38% Similarity=0.711 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHcC
Q 020346 161 TTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g 181 (327)
.++|+|.+|||||||++.+.+
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (166)
T d1z0fa1 6 KYIIIGDMGVGKSCLLHQFTE 26 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 489999999999999999886
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=97.22 E-value=0.00014 Score=58.77 Aligned_cols=21 Identities=29% Similarity=0.485 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHcC
Q 020346 161 TTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g 181 (327)
.++|+|++|||||||+|.|.+
T Consensus 4 ki~i~G~~~~GKTsLl~~l~~ 24 (164)
T d1zd9a1 4 ELTLVGLQYSGKTTFVNVIAS 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999999987
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.21 E-value=7.3e-05 Score=60.78 Aligned_cols=22 Identities=23% Similarity=0.329 Sum_probs=20.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHcC
Q 020346 160 QTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 160 ~~v~lvG~sG~GKSTLln~L~g 181 (327)
++++|+|++|||||||++.|..
T Consensus 2 kii~I~G~~gSGKTTli~~l~~ 23 (165)
T d1xjca_ 2 NVWQVVGYKHSGKTTLMEKWVA 23 (165)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHH
Confidence 4689999999999999998876
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.19 E-value=5e-05 Score=61.27 Aligned_cols=22 Identities=36% Similarity=0.744 Sum_probs=20.4
Q ss_pred CEEEEEcCCCCCHHHHHHHHcC
Q 020346 160 QTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 160 ~~v~lvG~sG~GKSTLln~L~g 181 (327)
+.+.|.||+|+|||||++.+..
T Consensus 2 k~v~ItG~~GtGKTtl~~~i~~ 23 (189)
T d2i3ba1 2 RHVFLTGPPGVGKTTLIHKASE 23 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHH
T ss_pred cEEEEECCCCCcHHHHHHHHHH
Confidence 4689999999999999999998
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=97.19 E-value=8.9e-05 Score=59.79 Aligned_cols=24 Identities=25% Similarity=0.547 Sum_probs=22.0
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcC
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g 181 (327)
++..++|.|+|||||||+.+.|..
T Consensus 4 k~~~I~i~G~~GsGKTT~~~~La~ 27 (174)
T d1y63a_ 4 KGINILITGTPGTGKTSMAEMIAA 27 (174)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHH
Confidence 467899999999999999999986
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=97.17 E-value=7.7e-05 Score=58.84 Aligned_cols=22 Identities=36% Similarity=0.647 Sum_probs=20.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHcC
Q 020346 160 QTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 160 ~~v~lvG~sG~GKSTLln~L~g 181 (327)
+.+.|+|||||||||+-+.|+-
T Consensus 3 k~I~l~G~~GsGKSTvak~La~ 24 (169)
T d1kaga_ 3 RNIFLVGPMGAGKSTIGRQLAQ 24 (169)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999986
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=97.17 E-value=8e-05 Score=58.99 Aligned_cols=22 Identities=23% Similarity=0.412 Sum_probs=19.4
Q ss_pred CEEEEEcCCCCCHHHHHHHHcC
Q 020346 160 QTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 160 ~~v~lvG~sG~GKSTLln~L~g 181 (327)
+.+.|.|+||||||||.+.|..
T Consensus 3 klIii~G~pGsGKTTla~~L~~ 24 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIA 24 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999998864
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.16 E-value=0.00025 Score=57.57 Aligned_cols=21 Identities=38% Similarity=0.740 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHcC
Q 020346 161 TTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g 181 (327)
.++|+|++|||||||++.+..
T Consensus 8 Ki~vvG~~~vGKTsli~~~~~ 28 (170)
T d2g6ba1 8 KVMLVGDSGVGKTCLLVRFKD 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 489999999999999998766
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.16 E-value=0.00029 Score=62.59 Aligned_cols=23 Identities=26% Similarity=0.445 Sum_probs=21.1
Q ss_pred EEEEEcCCCCCHHHHHHHHcCCC
Q 020346 161 TTVIVGPSGVGKSSLINALRSSP 183 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g~~ 183 (327)
.++|+|.-++|||||||+|+|..
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~~ 50 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Confidence 48999999999999999999954
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.15 E-value=0.00025 Score=58.31 Aligned_cols=21 Identities=48% Similarity=0.787 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHcC
Q 020346 161 TTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g 181 (327)
.++|+|.+|||||||+|.+.+
T Consensus 4 Kv~vvG~~~vGKSSLi~~l~~ 24 (184)
T d1vg8a_ 4 KVIILGDSGVGKTSLMNQYVN 24 (184)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 489999999999999999886
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.15 E-value=0.00026 Score=63.24 Aligned_cols=24 Identities=38% Similarity=0.427 Sum_probs=21.5
Q ss_pred CEEEEEcCCCCCHHHHHHHHcCCC
Q 020346 160 QTTVIVGPSGVGKSSLINALRSSP 183 (327)
Q Consensus 160 ~~v~lvG~sG~GKSTLln~L~g~~ 183 (327)
.+|+|+|+.++|||||+|.|.|..
T Consensus 33 ~vvsi~G~~~sGKS~llN~l~~~~ 56 (277)
T d1f5na2 33 VVVAIVGLYRTGKSYLMNKLAGKK 56 (277)
T ss_dssp EEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred EEEEEECCCCCCHHHHHHHHcCCC
Confidence 478999999999999999999943
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=97.14 E-value=9.4e-05 Score=60.01 Aligned_cols=25 Identities=20% Similarity=0.526 Sum_probs=22.3
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcCC
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g~ 182 (327)
+.-.++|+|.+|||||||+|.|.+.
T Consensus 14 k~~kI~vvG~~~~GKSsLi~rl~~~ 38 (177)
T d1zj6a1 14 QEHKVIIVGLDNAGKTTILYQFSMN 38 (177)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CeEEEEEECCCCCCHHHHHHHHhcC
Confidence 4457999999999999999999984
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=97.13 E-value=9.9e-05 Score=59.41 Aligned_cols=24 Identities=29% Similarity=0.490 Sum_probs=21.8
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcC
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g 181 (327)
.++++.|+|+|||||||+.+.|..
T Consensus 5 ~~~iivl~G~~GsGKsT~a~~La~ 28 (171)
T d1knqa_ 5 DHHIYVLMGVSGSGKSAVASEVAH 28 (171)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999999987
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=97.13 E-value=0.00075 Score=55.43 Aligned_cols=82 Identities=12% Similarity=0.206 Sum_probs=54.9
Q ss_pred ccccccEEEEEeecCCCCCChHHHHHHHHHHHhcCCCEEEEeecCCCCcHHHHHHHH---hhh-h---hc-CCceeeccC
Q 020346 73 PVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWK---SRL-H---TW-GYEPLFCSV 144 (327)
Q Consensus 73 ~~anvD~lliv~~~~~p~~~~~~l~r~L~~a~~~~~~~~ivlnK~Dl~~~~~~~~~~---~~~-~---~~-~~~~~~~s~ 144 (327)
.++.+|.++++.++..+ ... .-...+..+...++|+++|+||+|+.+.+...... ..+ . .+ ..+++++|+
T Consensus 79 ~l~~~d~~ilv~d~~~g-~~~-~~~~~~~~~~~~~~p~iiv~NKiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~iSA 156 (179)
T d1wb1a4 79 AADIIDLALIVVDAKEG-PKT-QTGEHMLILDHFNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISA 156 (179)
T ss_dssp HTTSCCEEEEEEETTTC-SCH-HHHHHHHHHHHTTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEECCT
T ss_pred hhhhccccccccccccc-cch-hhhhhhhhhhhcCCcceeccccccccCHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEc
Confidence 46788999999988764 333 22334455677899999999999999875432221 111 1 11 246788999
Q ss_pred cchhhHHHHHhh
Q 020346 145 ESKLGLDSLLQR 156 (327)
Q Consensus 145 ~~~~~l~~l~~~ 156 (327)
.++.+++++...
T Consensus 157 ~~g~gi~eL~~~ 168 (179)
T d1wb1a4 157 KTGFGVDELKNL 168 (179)
T ss_dssp TTCTTHHHHHHH
T ss_pred cCCcCHHHHHHH
Confidence 888888877554
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.13 E-value=0.00027 Score=57.58 Aligned_cols=21 Identities=43% Similarity=0.754 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHcC
Q 020346 161 TTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g 181 (327)
.++|+|.+|||||||+|.+..
T Consensus 8 KI~vvG~~~vGKSSli~~~~~ 28 (174)
T d1wmsa_ 8 KVILLGDGGVGKSSLMNRYVT 28 (174)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 489999999999999999876
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=97.12 E-value=0.00017 Score=58.82 Aligned_cols=23 Identities=17% Similarity=0.488 Sum_probs=20.9
Q ss_pred CCEEEEEcCCCCCHHHHHHHHcC
Q 020346 159 DQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 159 g~~v~lvG~sG~GKSTLln~L~g 181 (327)
.-.++++|++|||||||++.+..
T Consensus 12 ~~kIvlvG~~~vGKTSli~rl~~ 34 (173)
T d1e0sa_ 12 EMRILMLGLDAAGKTTILYKLKL 34 (173)
T ss_dssp CEEEEEEEETTSSHHHHHHHTTC
T ss_pred eEEEEEECCCCCCHHHHHHHHhc
Confidence 34699999999999999999987
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=97.11 E-value=9.9e-05 Score=58.95 Aligned_cols=22 Identities=41% Similarity=0.705 Sum_probs=20.2
Q ss_pred CEEEEEcCCCCCHHHHHHHHcC
Q 020346 160 QTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 160 ~~v~lvG~sG~GKSTLln~L~g 181 (327)
+.+.|.|+|||||||+.+.|+.
T Consensus 3 klI~i~G~~GsGKTTva~~L~~ 24 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAA 24 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999986
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=97.10 E-value=0.00017 Score=59.21 Aligned_cols=24 Identities=25% Similarity=0.587 Sum_probs=21.4
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcC
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g 181 (327)
+.-.++|+|++|||||||++.|.+
T Consensus 16 k~~KI~lvG~~~vGKTsLi~~l~~ 39 (182)
T d1moza_ 16 KELRILILGLDGAGKTTILYRLQI 39 (182)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred ceEEEEEECCCCCCHHHHHHHHhc
Confidence 345799999999999999999987
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.10 E-value=0.00013 Score=59.69 Aligned_cols=21 Identities=29% Similarity=0.618 Sum_probs=9.2
Q ss_pred EEEEEcCCCCCHHHHHHHHcC
Q 020346 161 TTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g 181 (327)
.++|+|.+|||||||++.|++
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~ 28 (173)
T d2fu5c1 8 KLLLIGDSGVGKTCVLFRFSE 28 (173)
T ss_dssp EEEEECCCCC-----------
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 489999999999999999887
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=97.09 E-value=9.4e-05 Score=59.35 Aligned_cols=21 Identities=38% Similarity=0.640 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHcC
Q 020346 161 TTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g 181 (327)
.++|+|+|||||||+.+.|+-
T Consensus 6 ~I~i~G~pGsGKTTia~~La~ 26 (173)
T d1rkba_ 6 NILLTGTPGVGKTTLGKELAS 26 (173)
T ss_dssp CEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999975
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=97.08 E-value=0.00013 Score=58.51 Aligned_cols=23 Identities=30% Similarity=0.559 Sum_probs=21.4
Q ss_pred CCEEEEEcCCCCCHHHHHHHHcC
Q 020346 159 DQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 159 g~~v~lvG~sG~GKSTLln~L~g 181 (327)
.+++.|.|+|||||||+.+.|..
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~ 25 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 57889999999999999999997
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.07 E-value=0.0003 Score=57.16 Aligned_cols=22 Identities=32% Similarity=0.607 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHcCC
Q 020346 161 TTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g~ 182 (327)
.++|+|.+|||||||++.+.+.
T Consensus 3 Ki~lvG~~~vGKTsLi~~~~~~ 24 (168)
T d2gjsa1 3 KVLLLGAPGVGKSALARIFGGV 24 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCcCHHHHHHHHhCC
Confidence 4899999999999999999983
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.06 E-value=0.00014 Score=59.14 Aligned_cols=22 Identities=41% Similarity=0.714 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHcCC
Q 020346 161 TTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g~ 182 (327)
.++|+|++|||||||+|.+.+.
T Consensus 4 Ki~~vG~~~vGKSsLi~~~~~~ 25 (175)
T d1ky3a_ 4 KVIILGDSGVGKTSLMHRYVND 25 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHcC
Confidence 4899999999999999998863
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.06 E-value=0.00028 Score=57.51 Aligned_cols=21 Identities=29% Similarity=0.585 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHcC
Q 020346 161 TTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g 181 (327)
.++++|.+|||||||++.+..
T Consensus 5 Ki~vvG~~~vGKTsli~~~~~ 25 (170)
T d1i2ma_ 5 KLVLVGDGGTGKTTFVKRHLT 25 (170)
T ss_dssp EEEEEECTTSSHHHHHHTTC-
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999999987
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=97.05 E-value=0.00012 Score=62.34 Aligned_cols=21 Identities=33% Similarity=0.604 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHcC
Q 020346 161 TTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g 181 (327)
+++|+|++|||||||++.|+.
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~ 22 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGR 22 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHHH
Confidence 689999999999999999974
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.04 E-value=0.00015 Score=58.78 Aligned_cols=22 Identities=45% Similarity=0.640 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHcCC
Q 020346 161 TTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g~ 182 (327)
.++|+|.+|||||||+|.|.+.
T Consensus 5 Ki~viG~~~vGKTsli~~l~~~ 26 (166)
T d1ctqa_ 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999873
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=97.04 E-value=0.0002 Score=64.07 Aligned_cols=21 Identities=14% Similarity=0.135 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHcC
Q 020346 161 TTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g 181 (327)
.++|+|+.|+|||||+.+|+-
T Consensus 8 ni~i~gh~~~GKTtL~e~ll~ 28 (276)
T d2bv3a2 8 NIGIAAHIDAGKTTTTERILY 28 (276)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHH
Confidence 689999999999999999853
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.02 E-value=0.00024 Score=57.57 Aligned_cols=22 Identities=36% Similarity=0.585 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHcCC
Q 020346 161 TTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g~ 182 (327)
.++|+|.+|||||||++.+.+.
T Consensus 4 Ki~viG~~~vGKTsLi~r~~~~ 25 (171)
T d2erxa1 4 RVAVFGAGGVGKSSLVLRFVKG 25 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999998873
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.01 E-value=0.00015 Score=60.24 Aligned_cols=22 Identities=36% Similarity=0.674 Sum_probs=20.2
Q ss_pred CEEEEEcCCCCCHHHHHHHHcC
Q 020346 160 QTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 160 ~~v~lvG~sG~GKSTLln~L~g 181 (327)
+.++|+||||||||||++.|+.
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L~~ 25 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTLIT 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999885
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.00 E-value=0.0003 Score=57.35 Aligned_cols=21 Identities=38% Similarity=0.695 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHcC
Q 020346 161 TTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g 181 (327)
.++|+|.+|||||||++.+.+
T Consensus 5 KivvvG~~~vGKTsli~r~~~ 25 (173)
T d2a5ja1 5 KYIIIGDTGVGKSCLLLQFTD 25 (173)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHhc
Confidence 488999999999999999886
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.99 E-value=0.00042 Score=56.14 Aligned_cols=21 Identities=43% Similarity=0.585 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHcC
Q 020346 161 TTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g 181 (327)
.++|+|.+|||||||++.|..
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~ 28 (170)
T d1r2qa_ 8 KLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999999986
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.99 E-value=0.00047 Score=55.69 Aligned_cols=21 Identities=33% Similarity=0.493 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHcC
Q 020346 161 TTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g 181 (327)
.++|+|.+|||||||++.+.+
T Consensus 5 KivlvG~~~vGKTsLi~r~~~ 25 (167)
T d1z08a1 5 KVVLLGEGCVGKTSLVLRYCE 25 (167)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 579999999999999999876
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.98 E-value=0.00044 Score=55.84 Aligned_cols=21 Identities=33% Similarity=0.597 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHcC
Q 020346 161 TTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g 181 (327)
.++|+|.+|||||||+|.|..
T Consensus 6 Ki~lvG~~~vGKTsli~rl~~ 26 (167)
T d1z0ja1 6 KVCLLGDTGVGKSSIMWRFVE 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999999986
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.97 E-value=0.00046 Score=55.83 Aligned_cols=21 Identities=38% Similarity=0.581 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHcC
Q 020346 161 TTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g 181 (327)
.++|+|.+|||||||++.+.+
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~~ 25 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFVS 25 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999998886
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.96 E-value=0.0002 Score=57.92 Aligned_cols=22 Identities=36% Similarity=0.437 Sum_probs=20.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHcC
Q 020346 160 QTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 160 ~~v~lvG~sG~GKSTLln~L~g 181 (327)
..++|+|.+|||||||++.+.+
T Consensus 5 ~Kv~liG~~~vGKTsLl~~~~~ 26 (167)
T d1xtqa1 5 RKIAILGYRSVGKSSLTIQFVE 26 (167)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHh
Confidence 4689999999999999999876
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.96 E-value=0.00051 Score=55.94 Aligned_cols=21 Identities=43% Similarity=0.594 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHcC
Q 020346 161 TTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g 181 (327)
.++|+|.+|||||||++.+..
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~~ 28 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFIQ 28 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999999886
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=96.96 E-value=0.00017 Score=59.79 Aligned_cols=24 Identities=17% Similarity=0.386 Sum_probs=21.4
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcC
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g 181 (327)
+..+++|+|||||||||+.+.|+.
T Consensus 5 kp~iI~i~G~pGSGKsT~a~~La~ 28 (194)
T d1qf9a_ 5 KPNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999986
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.94 E-value=8.8e-05 Score=60.95 Aligned_cols=24 Identities=38% Similarity=0.500 Sum_probs=22.0
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcC
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g 181 (327)
+|.++.|+|+|||||||+-+.|.-
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~ 41 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEE 41 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 577999999999999999999975
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.94 E-value=0.00016 Score=60.12 Aligned_cols=21 Identities=52% Similarity=0.817 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHcC
Q 020346 161 TTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g 181 (327)
-++|+||||||||||++.|+.
T Consensus 3 pIvl~GpsG~GK~tl~~~L~~ 23 (186)
T d1gkya_ 3 PIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 378999999999999999976
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=96.93 E-value=0.00043 Score=57.74 Aligned_cols=22 Identities=32% Similarity=0.421 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHcCC
Q 020346 161 TTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g~ 182 (327)
.+|++|..++|||||+|.|+|.
T Consensus 7 nIaiiGhvd~GKSTL~~~L~g~ 28 (195)
T d1kk1a3 7 NIGMVGHVDHGKTTLTKALTGV 28 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEEeccCCcHHHHHHHHHhh
Confidence 4799999999999999999983
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.91 E-value=0.00019 Score=58.77 Aligned_cols=24 Identities=33% Similarity=0.357 Sum_probs=20.6
Q ss_pred CCC-EEEEEcCCCCCHHHHHHHHcC
Q 020346 158 RDQ-TTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 158 ~g~-~v~lvG~sG~GKSTLln~L~g 181 (327)
+|. ++||-|++|||||||.+.|..
T Consensus 20 ~~~~iIgI~G~~GSGKSTla~~L~~ 44 (198)
T d1rz3a_ 20 AGRLVLGIDGLSRSGKTTLANQLSQ 44 (198)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 344 688999999999999999875
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.91 E-value=0.00033 Score=56.59 Aligned_cols=22 Identities=36% Similarity=0.634 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHcCC
Q 020346 161 TTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g~ 182 (327)
.++|+|.+|||||||+|.+.+.
T Consensus 5 Ki~lvG~~~vGKTsLi~r~~~~ 26 (167)
T d1kaoa_ 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 6899999999999999999873
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=96.90 E-value=0.0015 Score=52.62 Aligned_cols=81 Identities=21% Similarity=0.252 Sum_probs=51.7
Q ss_pred ccccccEEEEEeecCCCCCChHHHHHHHHHHHhcCCCEEEEeecCCCCcHHHHHHHHhhhhhcCC-ceeeccCcchhhHH
Q 020346 73 PVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGY-EPLFCSVESKLGLD 151 (327)
Q Consensus 73 ~~anvD~lliv~~~~~p~~~~~~l~r~L~~a~~~~~~~~ivlnK~Dl~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~l~ 151 (327)
.+..+|+++++.+...+. .. .....+......++|+++|+||+|+.++...+ ....+...++ +.+.+|+.++.+++
T Consensus 77 ~~~~ad~i~~~~~~~~~~-~~-~~~~~~~~l~~~~~pviiv~NK~Dl~~~~~~~-~~~~~~~~~~~~~i~iSAk~g~gid 153 (171)
T d1mkya1 77 MIREADLVLFVVDGKRGI-TK-EDESLADFLRKSTVDTILVANKAENLREFERE-VKPELYSLGFGEPIPVSAEHNINLD 153 (171)
T ss_dssp HHTTCSEEEEEEETTTCC-CH-HHHHHHHHHHHHTCCEEEEEESCCSHHHHHHH-THHHHGGGSSCSCEECBTTTTBSHH
T ss_pred ccccCcEEEEeecccccc-cc-cccccccccccccccccccchhhhhhhhhhhH-HHHHHHhcCCCCeEEEecCCCCCHH
Confidence 367899998888876543 22 22223333456789999999999997654322 2223333444 56788888877777
Q ss_pred HHHhh
Q 020346 152 SLLQR 156 (327)
Q Consensus 152 ~l~~~ 156 (327)
.+...
T Consensus 154 ~L~~~ 158 (171)
T d1mkya1 154 TMLET 158 (171)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66543
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=96.90 E-value=0.0013 Score=53.56 Aligned_cols=82 Identities=18% Similarity=0.199 Sum_probs=51.1
Q ss_pred ccccccEEEEEeecCCCCCCh-HHHHHHHHHHHhcCCCEEEEeecCCCCcHHHHHHHHhhhhh-cC-CceeeccCcchhh
Q 020346 73 PVANVDHLLLLFSMDQPKLEP-FALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHT-WG-YEPLFCSVESKLG 149 (327)
Q Consensus 73 ~~anvD~lliv~~~~~p~~~~-~~l~r~L~~a~~~~~~~~ivlnK~Dl~~~~~~~~~~~~~~~-~~-~~~~~~s~~~~~~ 149 (327)
.++++|.+++|+++..+.... ..+.+.+.. ....+|+++|+||+|+.+..+ .+...+.. ++ .+.+.+|+.++.+
T Consensus 81 ~~~~ad~il~v~D~~~~~~~~~~~i~~~l~~-~~~~~piilv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~iSA~~~~g 157 (178)
T d1wf3a1 81 ALADVNAVVWVVDLRHPPTPEDELVARALKP-LVGKVPILLVGNKLDAAKYPE--EAMKAYHELLPEAEPRMLSALDERQ 157 (178)
T ss_dssp HTSSCSEEEEEEETTSCCCHHHHHHHHHHGG-GTTTSCEEEEEECGGGCSSHH--HHHHHHHHTSTTSEEEECCTTCHHH
T ss_pred ccccccceeeeechhhhhcccccchhhheec-cccchhhhhhhcccccccCHH--HHHHHHHhhcccCceEEEecCCCCC
Confidence 468999999999998753221 123333321 234678999999999976432 11222222 33 3677889888888
Q ss_pred HHHHHhhc
Q 020346 150 LDSLLQRL 157 (327)
Q Consensus 150 l~~l~~~l 157 (327)
++++...+
T Consensus 158 i~~L~~~i 165 (178)
T d1wf3a1 158 VAELKADL 165 (178)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 87765543
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.88 E-value=0.00035 Score=56.68 Aligned_cols=21 Identities=43% Similarity=0.589 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHcC
Q 020346 161 TTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g 181 (327)
.++|+|.+||||||||+.+.+
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~ 27 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQ 27 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999999876
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=96.85 E-value=0.00018 Score=60.96 Aligned_cols=21 Identities=24% Similarity=0.371 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHcC
Q 020346 161 TTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g 181 (327)
.++++|..++|||||++.|++
T Consensus 5 ni~iiGHvd~GKSTL~~~l~~ 25 (196)
T d1d2ea3 5 NVGTIGHVDHGKTTLTAAITK 25 (196)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCCcHHHHHHHHHH
Confidence 589999999999999999986
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=96.83 E-value=0.00024 Score=57.67 Aligned_cols=22 Identities=27% Similarity=0.644 Sum_probs=19.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHcC
Q 020346 160 QTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 160 ~~v~lvG~sG~GKSTLln~L~g 181 (327)
++++|.|++||||||+++.|..
T Consensus 2 kiivi~G~~GsGKTT~~~~La~ 23 (194)
T d1nksa_ 2 KIGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4678899999999999999976
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=96.82 E-value=0.00023 Score=57.72 Aligned_cols=22 Identities=41% Similarity=0.588 Sum_probs=19.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHcC
Q 020346 160 QTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 160 ~~v~lvG~sG~GKSTLln~L~g 181 (327)
+.++|+|+|||||||+-+.|+.
T Consensus 1 k~I~liG~~GsGKsTi~k~La~ 22 (161)
T d1viaa_ 1 KNIVFIGFMGSGKSTLARALAK 22 (161)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHH
Confidence 3588999999999999999986
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=96.82 E-value=0.00029 Score=58.23 Aligned_cols=24 Identities=29% Similarity=0.591 Sum_probs=21.7
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcC
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g 181 (327)
+|-.++|+|||||||||+.+.|+-
T Consensus 2 ~~~riil~G~pGSGKsT~a~~La~ 25 (190)
T d1ak2a1 2 KGVRAVLLGPPGAGKGTQAPKLAK 25 (190)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHHH
Confidence 477889999999999999999984
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=96.80 E-value=0.00025 Score=64.85 Aligned_cols=24 Identities=25% Similarity=0.446 Sum_probs=21.2
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcC
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g 181 (327)
+..+++|.|+||||||||++.|..
T Consensus 53 ~~~~IgitG~pGaGKSTLi~~l~~ 76 (327)
T d2p67a1 53 NTLRLGVTGTPGAGKSTFLEAFGM 76 (327)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHH
T ss_pred CceEEEeeCCCCCCHHHHHHHHHH
Confidence 356899999999999999999973
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=96.78 E-value=0.0022 Score=52.83 Aligned_cols=82 Identities=12% Similarity=0.138 Sum_probs=53.9
Q ss_pred ccccccEEEEEeecCCCCCChHHHHHHHHHHHhcCCCEEEEeecCCCCcHHHHHHHHhhhh-----hcCCceeeccCcch
Q 020346 73 PVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLH-----TWGYEPLFCSVESK 147 (327)
Q Consensus 73 ~~anvD~lliv~~~~~p~~~~~~l~r~L~~a~~~~~~~~ivlnK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~ 147 (327)
.+.++|.++++.++..|. .. .-...+..+...++|+++|+||+|+.++.........+. ....+.+.+|+.++
T Consensus 102 ~~~~~~~vi~viD~~~~~-~~-~~~~~~~~l~~~~~piivv~NK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~SA~~~ 179 (195)
T d1svia_ 102 TREELKAVVQIVDLRHAP-SN-DDVQMYEFLKYYGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDELILFSSETK 179 (195)
T ss_dssp HCTTEEEEEEEEETTSCC-CH-HHHHHHHHHHHTTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEEEECCTTTC
T ss_pred cccchhhhhhhhhccccc-cc-cccccccccccccCcceechhhccccCHHHHHHHHHHHHHHhcccCCCCEEEEeCCCC
Confidence 356789999999887653 32 223444455677899999999999976554333222221 12346788888888
Q ss_pred hhHHHHHhh
Q 020346 148 LGLDSLLQR 156 (327)
Q Consensus 148 ~~l~~l~~~ 156 (327)
.+++++...
T Consensus 180 ~gi~el~~~ 188 (195)
T d1svia_ 180 KGKDEAWGA 188 (195)
T ss_dssp TTHHHHHHH
T ss_pred CCHHHHHHH
Confidence 888776543
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.76 E-value=0.00028 Score=58.99 Aligned_cols=20 Identities=50% Similarity=0.833 Sum_probs=18.4
Q ss_pred EEEEcCCCCCHHHHHHHHcC
Q 020346 162 TVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 162 v~lvG~sG~GKSTLln~L~g 181 (327)
++|+||||||||||++.|+.
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~ 22 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQ 22 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999865
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=96.74 E-value=0.00039 Score=56.48 Aligned_cols=21 Identities=38% Similarity=0.607 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHcC
Q 020346 161 TTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g 181 (327)
.++|+|.+|||||||+|.+..
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 689999999999999999876
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=96.73 E-value=0.00026 Score=60.90 Aligned_cols=24 Identities=25% Similarity=0.554 Sum_probs=21.4
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcC
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g 181 (327)
++-++||+|.+++|||||+|+|++
T Consensus 4 r~p~IaIiGh~d~GKSTL~~~L~~ 27 (227)
T d1g7sa4 4 RSPIVSVLGHVDHGKTTLLDHIRG 27 (227)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEEeCCCccHHHHHHHHHh
Confidence 344699999999999999999987
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.72 E-value=0.00036 Score=57.39 Aligned_cols=22 Identities=27% Similarity=0.554 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHcCC
Q 020346 161 TTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g~ 182 (327)
.++|+|.+|||||||+|.|.+.
T Consensus 7 Ki~ivG~~~vGKTsLi~~l~~~ 28 (186)
T d2f7sa1 7 KLLALGDSGVGKTTFLYRYTDN 28 (186)
T ss_dssp EEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEECCCCcCHHHHHHHHhcC
Confidence 4899999999999999999873
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.70 E-value=0.00042 Score=56.19 Aligned_cols=22 Identities=36% Similarity=0.585 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHcCC
Q 020346 161 TTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g~ 182 (327)
.++|+|.+|||||||++.+...
T Consensus 4 Ki~lvG~~~vGKTsli~r~~~~ 25 (168)
T d2atva1 4 KLAIFGRAGVGKSALVVRFLTK 25 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999873
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.70 E-value=0.00036 Score=56.80 Aligned_cols=21 Identities=24% Similarity=0.479 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHcC
Q 020346 161 TTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g 181 (327)
.++|+|||||||||+.+.|+-
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~ 22 (182)
T d1zina1 2 NLVLMGLPGAGKGTQAEKIVA 22 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999965
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=96.69 E-value=0.00032 Score=57.09 Aligned_cols=22 Identities=23% Similarity=0.448 Sum_probs=19.7
Q ss_pred CEEEEEcCCCCCHHHHHHHHcC
Q 020346 160 QTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 160 ~~v~lvG~sG~GKSTLln~L~g 181 (327)
+.+.|+|++||||||+-+.|+.
T Consensus 3 ~~Iil~G~~GsGKSTia~~LA~ 24 (170)
T d1e6ca_ 3 EPIFMVGARGCGMTTVGRELAR 24 (170)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999999975
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.69 E-value=0.00036 Score=57.83 Aligned_cols=21 Identities=29% Similarity=0.398 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHcC
Q 020346 161 TTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g 181 (327)
.++++|.||||||||.+.|+.
T Consensus 4 li~l~GlpgsGKSTla~~L~~ 24 (213)
T d1bifa1 4 LIVMVGLPARGKTYISKKLTR 24 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999985
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=96.68 E-value=0.00041 Score=57.61 Aligned_cols=25 Identities=20% Similarity=0.424 Sum_probs=22.7
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcCC
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g~ 182 (327)
+++++.|+|||||||||+.+.|+..
T Consensus 7 ~~~iI~l~G~pGSGKsT~a~~La~~ 31 (194)
T d3adka_ 7 KSKIIFVVGGPGSGKGTQCEKIVQK 31 (194)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 5788999999999999999999863
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.62 E-value=0.00069 Score=55.20 Aligned_cols=22 Identities=32% Similarity=0.445 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHcCC
Q 020346 161 TTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g~ 182 (327)
.++|+|.+|||||||++.+...
T Consensus 4 KivvvG~~~vGKTsLi~~~~~~ 25 (177)
T d1kmqa_ 4 KLVIVGDGACGKTCLLIVNSKD 25 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 5899999999999999998873
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.57 E-value=0.00046 Score=55.86 Aligned_cols=21 Identities=38% Similarity=0.566 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHHcC
Q 020346 161 TTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g 181 (327)
.++|+|++||||||+-+.|+.
T Consensus 3 ~IvliG~~G~GKSTig~~La~ 23 (165)
T d2iyva1 3 KAVLVGLPGSGKSTIGRRLAK 23 (165)
T ss_dssp SEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 367889999999999999976
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=96.57 E-value=0.00042 Score=57.23 Aligned_cols=22 Identities=18% Similarity=0.389 Sum_probs=19.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHcC
Q 020346 160 QTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 160 ~~v~lvG~sG~GKSTLln~L~g 181 (327)
-.+.|+||+||||||+.+.|+-
T Consensus 4 m~I~i~GppGsGKsT~a~~La~ 25 (189)
T d1zaka1 4 LKVMISGAPASGKGTQCELIKT 25 (189)
T ss_dssp CCEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3588999999999999999986
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=96.57 E-value=0.0029 Score=51.34 Aligned_cols=85 Identities=26% Similarity=0.291 Sum_probs=57.3
Q ss_pred ccccccEEEEEeecCCCCCCh-HHHHHHHHH--HHhcCCCEEEEeecCCCCcHHHHHHHHhhhhhcCCceeeccCcchhh
Q 020346 73 PVANVDHLLLLFSMDQPKLEP-FALTRFLVE--AESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVESKLG 149 (327)
Q Consensus 73 ~~anvD~lliv~~~~~p~~~~-~~l~r~L~~--a~~~~~~~~ivlnK~Dl~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 149 (327)
.+..+|.++.+.+........ ......+.. ....++|+++|+||+|+.+++........+...+.+.+.+|+.++.+
T Consensus 76 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~iSA~tg~g 155 (180)
T d1udxa2 76 HIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEEEAVKALADALAREGLAVLPVSALTGAG 155 (180)
T ss_dssp HHTSSSEEEEEEETTSCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEECCTTTCTT
T ss_pred HHHhhhhhhhhcccccccccchhhhhhhhhccccccchhhhhhhhhhhhhhhHHHHHHHHHHHHhcCCeEEEEEcCCCCC
Confidence 367888888777764321111 122222222 23346899999999999988776666666666678899999988888
Q ss_pred HHHHHhhc
Q 020346 150 LDSLLQRL 157 (327)
Q Consensus 150 l~~l~~~l 157 (327)
++.+...+
T Consensus 156 id~L~~~i 163 (180)
T d1udxa2 156 LPALKEAL 163 (180)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88775543
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.56 E-value=0.0014 Score=53.82 Aligned_cols=24 Identities=29% Similarity=0.428 Sum_probs=21.0
Q ss_pred CCEEEEEcCCCCCHHHHHHHHcCC
Q 020346 159 DQTTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 159 g~~v~lvG~sG~GKSTLln~L~g~ 182 (327)
--.++++|.+|||||||++.+.+.
T Consensus 5 ~~ki~vlG~~~vGKTsLi~~~~~~ 28 (175)
T d2bmja1 5 ELRLGVLGDARSGKSSLIHRFLTG 28 (175)
T ss_dssp EEEEEEECCTTTTHHHHHHHHHHS
T ss_pred cEEEEEECCCCCCHHHHHHHHHhC
Confidence 347899999999999999988873
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=96.55 E-value=0.00052 Score=56.32 Aligned_cols=21 Identities=24% Similarity=0.493 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHcC
Q 020346 161 TTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g 181 (327)
.+.|+|||||||||+.+.|+.
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~ 22 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVE 22 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999987
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.54 E-value=0.00053 Score=56.88 Aligned_cols=22 Identities=23% Similarity=0.430 Sum_probs=20.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHcC
Q 020346 160 QTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 160 ~~v~lvG~sG~GKSTLln~L~g 181 (327)
.+++|+|||||||||+.+.|+.
T Consensus 9 ~iI~i~GppGSGKsT~a~~La~ 30 (196)
T d1ukza_ 9 SVIFVLGGPGAGKGTQCEKLVK 30 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999987
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.52 E-value=0.00056 Score=56.13 Aligned_cols=22 Identities=32% Similarity=0.582 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHcCC
Q 020346 161 TTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g~ 182 (327)
.++|+|.+|||||||+|.+...
T Consensus 7 KivviG~~~vGKTsli~~~~~~ 28 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTTN 28 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999998873
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=96.50 E-value=0.007 Score=50.50 Aligned_cols=83 Identities=23% Similarity=0.276 Sum_probs=53.8
Q ss_pred ccccccEEEEEeecCCCCCChHHHHHHHHHHHhcCC-CEEEEeecCCCCcHHHHHHH----Hhhhhhc---CCceeeccC
Q 020346 73 PVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGI-PLTLALNKVELVDEEVLNTW----KSRLHTW---GYEPLFCSV 144 (327)
Q Consensus 73 ~~anvD~lliv~~~~~p~~~~~~l~r~L~~a~~~~~-~~~ivlnK~Dl~~~~~~~~~----~~~~~~~---~~~~~~~s~ 144 (327)
.++.+|.+++|.++..+.... .-...+..+...++ ++++++||+|+.+....... ...+... .++.+++|+
T Consensus 106 ~~~~ad~ailvVda~~gi~~~-~t~e~~~~~~~~~i~~iIV~vNK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~p~ipiSA 184 (205)
T d2qn6a3 106 GAALMDGAILVVAANEPFPQP-QTREHFVALGIIGVKNLIIVQNKVDVVSKEEALSQYRQIKQFTKGTWAENVPIIPVSA 184 (205)
T ss_dssp TSSCCSEEEEEEETTSCSSCH-HHHHHHHHHHHTTCCCEEEEEECGGGSCHHHHHHHHHHHHHHHTTSTTTTCCEEECBT
T ss_pred ceeccccccccccccccccch-hHHHHHHHHHHcCCceeeeccccCCCccchHHHHHHHHHHHHhccccCCCCeEEEEeC
Confidence 367899999999998753333 33445555666676 56677999999876543221 1222222 245688899
Q ss_pred cchhhHHHHHhh
Q 020346 145 ESKLGLDSLLQR 156 (327)
Q Consensus 145 ~~~~~l~~l~~~ 156 (327)
.++.+++++...
T Consensus 185 ~~g~nI~~L~e~ 196 (205)
T d2qn6a3 185 LHKINIDSLIEG 196 (205)
T ss_dssp TTTBSHHHHHHH
T ss_pred CCCCChHHHHHH
Confidence 888888777544
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.49 E-value=0.00062 Score=55.41 Aligned_cols=22 Identities=41% Similarity=0.696 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHcCC
Q 020346 161 TTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g~ 182 (327)
.++|+|.+|||||||+|.+.+.
T Consensus 5 Kv~lvG~~~vGKTsLi~~~~~~ 26 (172)
T d2g3ya1 5 RVVLIGEQGVGKSTLANIFAGV 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 5899999999999999999873
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.49 E-value=0.00045 Score=60.97 Aligned_cols=22 Identities=55% Similarity=0.966 Sum_probs=19.5
Q ss_pred CCCEEEEEcCCCCCHHHHHHHH
Q 020346 158 RDQTTVIVGPSGVGKSSLINAL 179 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L 179 (327)
.....+|+|+|||||||+|.+|
T Consensus 23 ~~~lnvlvG~NgsGKS~iL~Ai 44 (308)
T d1e69a_ 23 SDRVTAIVGPNGSGKSNIIDAI 44 (308)
T ss_dssp CSSEEEEECCTTTCSTHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHH
Confidence 3458899999999999999887
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=96.49 E-value=0.00056 Score=62.32 Aligned_cols=24 Identities=50% Similarity=0.614 Sum_probs=21.2
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcC
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g 181 (327)
+..+++|.|+||||||||++.|..
T Consensus 50 ~~~~igitG~pGaGKSTli~~l~~ 73 (323)
T d2qm8a1 50 RAIRVGITGVPGVGKSTTIDALGS 73 (323)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEeeeCCCCCCHHHHHHHHHH
Confidence 345799999999999999999875
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.49 E-value=0.001 Score=56.27 Aligned_cols=51 Identities=24% Similarity=0.431 Sum_probs=33.2
Q ss_pred HHhhhhhcCCceeeccCcchhhHHHHHhhcC-C--CEEEEEcCCCCCHHHHHHHHcC
Q 020346 128 WKSRLHTWGYEPLFCSVESKLGLDSLLQRLR-D--QTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 128 ~~~~~~~~~~~~~~~s~~~~~~l~~l~~~l~-g--~~v~lvG~sG~GKSTLln~L~g 181 (327)
|.+.|+--.++.+. ++...++.|...+. + ..+.|.||+|+|||||+++|+.
T Consensus 2 w~~ky~P~~~~dii---g~~~~~~~l~~~i~~~~~~~lll~Gp~G~GKTtl~~~i~~ 55 (237)
T d1sxjd2 2 WVEKYRPKNLDEVT---AQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTK 55 (237)
T ss_dssp HHHHTCCSSTTTCC---SCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHH
T ss_pred cchhhCCCCHHHcc---CcHHHHHHHHHHHHcCCCCeEEEECCCCCChHHHHHHHHH
Confidence 45555444444432 33445566655552 2 2478999999999999999986
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.45 E-value=0.00066 Score=54.42 Aligned_cols=21 Identities=29% Similarity=0.547 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHcC
Q 020346 161 TTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g 181 (327)
.++|+|.+|||||||++.+..
T Consensus 4 Kv~liG~~~vGKTsLl~~~~~ 24 (165)
T d1z06a1 4 KIIVIGDSNVGKTCLTYRFCA 24 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 489999999999999999886
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.45 E-value=0.00064 Score=56.08 Aligned_cols=21 Identities=19% Similarity=0.417 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHcC
Q 020346 161 TTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g 181 (327)
+++|+|||||||||..+.|+.
T Consensus 3 iI~i~GppGSGKsT~a~~La~ 23 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVE 23 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999976
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.44 E-value=0.0008 Score=55.34 Aligned_cols=24 Identities=33% Similarity=0.450 Sum_probs=21.2
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcC
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g 181 (327)
....+.++|+|||||||+.+.|+.
T Consensus 13 ~p~liil~G~pGsGKST~a~~l~~ 36 (172)
T d1yj5a2 13 NPEVVVAVGFPGAGKSTFIQEHLV 36 (172)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHTG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999998875
|
| >d1d7qa_ b.40.4.5 (A:) Translation initiation factor-1a, eIF1a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: Translation initiation factor-1a, eIF1a species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.43 E-value=0.003 Score=50.66 Aligned_cols=61 Identities=23% Similarity=0.291 Sum_probs=47.2
Q ss_pred eEEEecCCCC-ceeccCCCCcEEEEEEcccccccCCCcccCcEEEEceecccCCceEEeeeccc
Q 020346 3 VIVQQSEPSR-TSDCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQR 65 (327)
Q Consensus 3 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~vGD~V~~~~~~~~~~~~~i~~i~~R 65 (327)
|+|++.-.+. |.|.- .+|....|.+||+||+ ...+..||||.+...+|+...+-|..++.+
T Consensus 35 a~V~k~lG~~~~~V~~-~dg~~rl~~irgk~r~-r~~i~~Gd~VlV~~rd~e~~K~DIl~~Y~~ 96 (143)
T d1d7qa_ 35 AQVIKMLGNGRLEAMC-FDGVKRLCHIRGKLRK-KVWINTSDIILVGLRDYQDNKADVILKYNA 96 (143)
T ss_dssp EEEEEECSSSEEEEEE-TTTEEEEEECCSGGGG-SCCCCTTCEEEEECSSSSSSCCEEEEEECT
T ss_pred EEEEEEcCCCEEEEEE-CCCCEEEEEecCccee-EEEEeCCCEEEEeccCCcCcEEEEEEECCH
Confidence 6788887433 44443 4789999999999974 678999999999998887767777766655
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.43 E-value=0.0008 Score=55.42 Aligned_cols=21 Identities=33% Similarity=0.589 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHcC
Q 020346 161 TTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g 181 (327)
.++|+|.+|||||||++.+..
T Consensus 11 Ki~lvG~~~vGKTsLi~r~~~ 31 (185)
T d2atxa1 11 KCVVVGDGAVGKTCLLMSYAN 31 (185)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhh
Confidence 589999999999999999876
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=96.43 E-value=0.0011 Score=56.15 Aligned_cols=51 Identities=20% Similarity=0.345 Sum_probs=33.6
Q ss_pred HHhhhhhcCCceeeccCcchhhHHHHHhhc---CCCEEEEEcCCCCCHHHHHHHHcC
Q 020346 128 WKSRLHTWGYEPLFCSVESKLGLDSLLQRL---RDQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 128 ~~~~~~~~~~~~~~~s~~~~~~l~~l~~~l---~g~~v~lvG~sG~GKSTLln~L~g 181 (327)
|.+.|+--.++.+. ++..+++.+...+ +-..+.|.||+|+|||||+++|+.
T Consensus 14 w~~ky~P~~~~dii---g~~~~~~~l~~~i~~~~~~~lll~Gp~G~GKTtla~~iak 67 (231)
T d1iqpa2 14 WVEKYRPQRLDDIV---GQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALAR 67 (231)
T ss_dssp HHHHTCCCSTTTCC---SCHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHH
T ss_pred HHHHhCCCCHHHcc---CcHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHH
Confidence 55555543444332 3345555555554 224689999999999999999986
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.40 E-value=0.00095 Score=53.78 Aligned_cols=21 Identities=38% Similarity=0.616 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHcC
Q 020346 161 TTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g 181 (327)
.++|+|.+|||||||++.+..
T Consensus 5 KivvvG~~~vGKTsli~r~~~ 25 (167)
T d1c1ya_ 5 KLVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999999886
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.39 E-value=0.00073 Score=56.74 Aligned_cols=22 Identities=23% Similarity=0.237 Sum_probs=19.7
Q ss_pred CEEEEEcCCCCCHHHHHHHHcC
Q 020346 160 QTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 160 ~~v~lvG~sG~GKSTLln~L~g 181 (327)
-++||-|++|||||||.+.|.-
T Consensus 3 ~iIgI~G~~gSGKSTla~~L~~ 24 (213)
T d1uj2a_ 3 FLIGVSGGTASGKSSVCAKIVQ 24 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999998865
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=96.39 E-value=0.00074 Score=55.09 Aligned_cols=21 Identities=14% Similarity=0.319 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHcC
Q 020346 161 TTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g 181 (327)
.++|+|||||||||+.+.|+-
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~ 22 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIME 22 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999976
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=96.39 E-value=0.00017 Score=58.47 Aligned_cols=21 Identities=33% Similarity=0.510 Sum_probs=18.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHc
Q 020346 160 QTTVIVGPSGVGKSSLINALR 180 (327)
Q Consensus 160 ~~v~lvG~sG~GKSTLln~L~ 180 (327)
.+++|+|+|||||||++.+|.
T Consensus 25 ~~tvi~G~NGsGKStil~Ai~ 45 (222)
T d1qhla_ 25 LVTTLSGGNGAGKSTTMAAFV 45 (222)
T ss_dssp HHHHHHSCCSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 467899999999999999985
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.36 E-value=0.00079 Score=55.01 Aligned_cols=21 Identities=29% Similarity=0.601 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHcC
Q 020346 161 TTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g 181 (327)
.+.|+|||||||||+.+.|+.
T Consensus 2 ~I~i~G~pGsGKsT~a~~La~ 22 (181)
T d2cdna1 2 RVLLLGPPGAGKGTQAVKLAE 22 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999976
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.35 E-value=0.0011 Score=53.96 Aligned_cols=24 Identities=21% Similarity=0.313 Sum_probs=22.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcC
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g 181 (327)
+|+.+.|.|+||+|||||...++.
T Consensus 22 ~G~v~~i~G~~GsGKT~l~l~la~ 45 (242)
T d1n0wa_ 22 TGSITEMFGEFRTGKTQICHTLAV 45 (242)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHH
Confidence 789999999999999999987775
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.31 E-value=0.0011 Score=53.70 Aligned_cols=21 Identities=43% Similarity=0.596 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHcC
Q 020346 161 TTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g 181 (327)
.++++|.+|||||||++.+.+
T Consensus 6 Ki~lvG~~~vGKTsll~~~~~ 26 (169)
T d1x1ra1 6 KLVVVGDGGVGKSALTIQFFQ 26 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 588999999999999999886
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=96.31 E-value=0.001 Score=59.26 Aligned_cols=23 Identities=30% Similarity=0.517 Sum_probs=21.2
Q ss_pred EEEEEcCCCCCHHHHHHHHcCCC
Q 020346 161 TTVIVGPSGVGKSSLINALRSSP 183 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g~~ 183 (327)
.++|||..++|||||||+|+|..
T Consensus 26 ~ivVvG~~ssGKSSliNaLlG~~ 48 (306)
T d1jwyb_ 26 QIVVVGSQSSGKSSVLENIVGRD 48 (306)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999954
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.29 E-value=0.001 Score=54.96 Aligned_cols=21 Identities=33% Similarity=0.596 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHcC
Q 020346 161 TTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g 181 (327)
.++|+|.+|||||||++.+..
T Consensus 5 KvvllG~~~vGKTSli~r~~~ 25 (191)
T d2ngra_ 5 KCVVVGDGAVGKTCLLISYTT 25 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999999886
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=96.29 E-value=0.00067 Score=58.35 Aligned_cols=24 Identities=29% Similarity=0.415 Sum_probs=21.2
Q ss_pred CCEEEEEcCCCCCHHHHHHHHcCC
Q 020346 159 DQTTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 159 g~~v~lvG~sG~GKSTLln~L~g~ 182 (327)
.+.+.|.||||+|||||.+.|++.
T Consensus 32 P~~ilL~GpPGtGKT~la~~la~~ 55 (273)
T d1gvnb_ 32 PTAFLLGGQPGSGKTSLRSAIFEE 55 (273)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH
Confidence 356889999999999999999883
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=96.28 E-value=0.0012 Score=60.07 Aligned_cols=24 Identities=21% Similarity=0.529 Sum_probs=22.3
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcC
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g 181 (327)
.+..+.|.|++|||||||+|+|++
T Consensus 165 ~~~nili~G~tgSGKTT~l~al~~ 188 (323)
T d1g6oa_ 165 IGKNVIVCGGTGSGKTTYIKSIME 188 (323)
T ss_dssp HTCCEEEEESTTSSHHHHHHHHGG
T ss_pred hCCCEEEEeeccccchHHHHHHhh
Confidence 567799999999999999999998
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.25 E-value=0.0015 Score=53.53 Aligned_cols=21 Identities=33% Similarity=0.612 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHcC
Q 020346 161 TTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g 181 (327)
.++|+|.+|||||||++.+..
T Consensus 4 KivliG~~~vGKTsli~r~~~ 24 (179)
T d1m7ba_ 4 KIVVVGDSQCGKTALLHVFAK 24 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999998876
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.21 E-value=0.0011 Score=54.40 Aligned_cols=22 Identities=32% Similarity=0.632 Sum_probs=19.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHcC
Q 020346 160 QTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 160 ~~v~lvG~sG~GKSTLln~L~g 181 (327)
..+.|+||+||||||+.+.|+-
T Consensus 3 mrIvl~G~pGSGKtT~a~~La~ 24 (180)
T d1akya1 3 IRMVLIGPPGAGKGTQAPNLQE 24 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999999986
|
| >d1jt8a_ b.40.4.5 (A:) Archaeal initiation factor-1a, aIF1a {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: Archaeal initiation factor-1a, aIF1a species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=96.19 E-value=0.0018 Score=49.07 Aligned_cols=61 Identities=20% Similarity=0.093 Sum_probs=45.5
Q ss_pred eeEEEecCCCCc-eeccCCCCcEEEEEEcccccccCCCcccCcEEEEceecccC-CceEEeeecc
Q 020346 2 RVIVQQSEPSRT-SDCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVD-RRGMIENVFQ 64 (327)
Q Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~vGD~V~~~~~~~~~-~~~~i~~i~~ 64 (327)
-|+|+|.-.|.. .|.- .+|....|.++|++++ ...+.+||+|.++..+++. ..+-|..++.
T Consensus 23 y~~V~k~lG~~~~~V~c-~dg~~rl~~irGK~Rk-~~~I~~Gd~VlV~~r~~~~~~K~dIl~~Y~ 85 (102)
T d1jt8a_ 23 LGIIEQMLGASRVRVRC-LDGKTRLGRIPGRLKN-RIWVREGDVVIVKPWEVQGDQKCDIIWRYT 85 (102)
T ss_dssp EEEEECSSCSSEEEEEE-ETTEEEEEECCHHHHH-HHCCCSCEEEEECCBCCTTSEEEEEEEESS
T ss_pred EEEEEEEcCCCEEEEEE-CCCCEEEEEEcCCcce-eeEecCCCEEEEEeeecCCCcEEEEEEECC
Confidence 478888775444 4443 4799999999999975 5789999999999888763 3566655544
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=96.19 E-value=0.0011 Score=55.16 Aligned_cols=23 Identities=22% Similarity=0.408 Sum_probs=20.8
Q ss_pred CCEEEEEcCCCCCHHHHHHHHcC
Q 020346 159 DQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 159 g~~v~lvG~sG~GKSTLln~L~g 181 (327)
.-.++|+|||||||||+.+.|+-
T Consensus 6 ~mrIiliG~PGSGKtT~a~~La~ 28 (189)
T d2ak3a1 6 LLRAAIMGAPGSGKGTVSSRITK 28 (189)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred ceeEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999999986
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.18 E-value=0.002 Score=54.95 Aligned_cols=23 Identities=22% Similarity=0.619 Sum_probs=21.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHcCC
Q 020346 160 QTTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 160 ~~v~lvG~sG~GKSTLln~L~g~ 182 (327)
..+.|.||||+||||++++|+..
T Consensus 53 ~~lll~GPpG~GKTt~a~~la~~ 75 (253)
T d1sxja2 53 RAAMLYGPPGIGKTTAAHLVAQE 75 (253)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999999984
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=96.17 E-value=0.0016 Score=58.51 Aligned_cols=25 Identities=28% Similarity=0.695 Sum_probs=22.3
Q ss_pred cCCCEEEEEcCCCCCHHHHHHHHcC
Q 020346 157 LRDQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 157 l~g~~v~lvG~sG~GKSTLln~L~g 181 (327)
.++..+.|+||||||||+|.++|+.
T Consensus 47 ~~~~~iLl~GPpG~GKT~lAkalA~ 71 (309)
T d1ofha_ 47 VTPKNILMIGPTGVGKTEIARRLAK 71 (309)
T ss_dssp CCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHhh
Confidence 3567789999999999999999987
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.14 E-value=0.0013 Score=60.08 Aligned_cols=21 Identities=43% Similarity=0.855 Sum_probs=19.3
Q ss_pred CCEEEEEcCCCCCHHHHHHHH
Q 020346 159 DQTTVIVGPSGVGKSSLINAL 179 (327)
Q Consensus 159 g~~v~lvG~sG~GKSTLln~L 179 (327)
+...+|+|+|||||||+|.+|
T Consensus 25 ~~l~~i~G~NGsGKS~ileAi 45 (427)
T d1w1wa_ 25 SNFTSIIGPNGSGKSNMMDAI 45 (427)
T ss_dssp CSEEEEECSTTSSHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHH
Confidence 557899999999999999997
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=96.12 E-value=0.0012 Score=54.38 Aligned_cols=25 Identities=28% Similarity=0.445 Sum_probs=21.9
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcCC
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g~ 182 (327)
+.-+++|-|+.||||||+++.|...
T Consensus 8 kp~~I~ieG~~GsGKTTl~~~L~~~ 32 (197)
T d2vp4a1 8 QPFTVLIEGNIGSGKTTYLNHFEKY 32 (197)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHHH
Confidence 3458999999999999999999873
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=96.08 E-value=0.0017 Score=55.34 Aligned_cols=22 Identities=27% Similarity=0.714 Sum_probs=20.2
Q ss_pred CEEEEEcCCCCCHHHHHHHHcC
Q 020346 160 QTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 160 ~~v~lvG~sG~GKSTLln~L~g 181 (327)
..+.|.||||+|||||.++|++
T Consensus 36 ~~~Ll~GPpG~GKTtla~~la~ 57 (239)
T d1ixsb2 36 EHLLLFGPPGLGKTTLAHVIAH 57 (239)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3588999999999999999997
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=96.04 E-value=0.0025 Score=54.11 Aligned_cols=33 Identities=30% Similarity=0.391 Sum_probs=24.9
Q ss_pred hhHHHHHhhcCCCEEEEEcCCCCCHHHHHHHHcC
Q 020346 148 LGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 148 ~~l~~l~~~l~g~~v~lvG~sG~GKSTLln~L~g 181 (327)
.-++.+.. ..+..++|.||+|+|||||++.++.
T Consensus 19 ~el~~l~~-~~~~~i~i~G~~G~GKTsLl~~~~~ 51 (283)
T d2fnaa2 19 KEIEKLKG-LRAPITLVLGLRRTGKSSIIKIGIN 51 (283)
T ss_dssp HHHHHHHH-TCSSEEEEEESTTSSHHHHHHHHHH
T ss_pred HHHHHHHh-ccCCEEEEEcCCCCcHHHHHHHHHH
Confidence 34444432 2567899999999999999998764
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.04 E-value=0.0078 Score=47.99 Aligned_cols=84 Identities=18% Similarity=0.192 Sum_probs=54.7
Q ss_pred ccccccccEEEEEeecCCCCCChHHHHHHHHHH----HhcCCCEEEEeecCCCCcHHH--HHHHHhhhhhcCCceeeccC
Q 020346 71 DPPVANVDHLLLLFSMDQPKLEPFALTRFLVEA----ESTGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLFCSV 144 (327)
Q Consensus 71 r~~~anvD~lliv~~~~~p~~~~~~l~r~L~~a----~~~~~~~~ivlnK~Dl~~~~~--~~~~~~~~~~~~~~~~~~s~ 144 (327)
.....++|.+++|+++..|. +...+.+++... .....|+++|.||.|+.++.. .+........++...+.+|+
T Consensus 70 ~~~~~~~d~~ilv~d~~~~~-s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~Sa 148 (167)
T d1xtqa1 70 QTYSIDINGYILVYSVTSIK-SFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSA 148 (167)
T ss_dssp GGGTSSCCEEEEEEETTCHH-HHHHHHHHHHHHHHHHCSSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCT
T ss_pred chhhhhhhhhhhhcccchhh-hhhhhhhhhhhhhhcccccccceeeeccccccccccchhHHHHHHHHHHcCCEEEEEec
Confidence 34567999999999998753 334455444332 234678999999999965321 11122233446777788899
Q ss_pred cchhhHHHHHh
Q 020346 145 ESKLGLDSLLQ 155 (327)
Q Consensus 145 ~~~~~l~~l~~ 155 (327)
.++.+++++-.
T Consensus 149 k~~~~v~~~f~ 159 (167)
T d1xtqa1 149 KENQTAVDVFR 159 (167)
T ss_dssp TCHHHHHHHHH
T ss_pred CCCCCHHHHHH
Confidence 88888877643
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.02 E-value=0.0028 Score=53.33 Aligned_cols=36 Identities=25% Similarity=0.388 Sum_probs=26.5
Q ss_pred chhhHHHHHhhc-CCC--EEEEEcCCCCCHHHHHHHHcC
Q 020346 146 SKLGLDSLLQRL-RDQ--TTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 146 ~~~~l~~l~~~l-~g~--~v~lvG~sG~GKSTLln~L~g 181 (327)
+..+++.|...+ .+. .+.|.||+|+|||||+++|+.
T Consensus 19 ~~~~~~~L~~~i~~~~~~~lLl~Gp~G~GKttl~~~la~ 57 (227)
T d1sxjc2 19 QNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAR 57 (227)
T ss_dssp CHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCCCeEEEECCCCCChhHHHHHHHH
Confidence 345556665554 232 378999999999999999986
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.01 E-value=0.0016 Score=53.46 Aligned_cols=30 Identities=23% Similarity=0.479 Sum_probs=24.1
Q ss_pred EEEEEcCCCCCHHHHHHHHcCCCCCCCccccccccccccc
Q 020346 161 TTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILG 200 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G 200 (327)
.+.|+|.+|||||||++.+.-. .-+.||-|
T Consensus 4 KivllG~~~vGKTsll~r~~f~----------~~~~pTiG 33 (200)
T d1zcba2 4 KILLLGAGESGKSTFLKQMRII----------HGQDPTKG 33 (200)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH----------HSCCCCSS
T ss_pred EEEEECCCCCCHHHHHHHHhcC----------CCCCCeee
Confidence 5899999999999999999431 14568877
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.00 E-value=0.0013 Score=55.59 Aligned_cols=24 Identities=33% Similarity=0.501 Sum_probs=22.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcC
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g 181 (327)
+++.++|-|+.||||||+++.|..
T Consensus 1 ~~k~I~ieG~dGsGKST~~~~L~~ 24 (241)
T d1p5zb_ 1 RIKKISIEGNIAAGKSTFVNILKQ 24 (241)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGG
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 367899999999999999999997
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=96.00 E-value=0.0017 Score=54.31 Aligned_cols=24 Identities=33% Similarity=0.473 Sum_probs=22.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcC
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g 181 (327)
+|+.++|-|+.||||||+++.|..
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~ 24 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVE 24 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999999885
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=96.00 E-value=0.0083 Score=48.48 Aligned_cols=82 Identities=17% Similarity=0.259 Sum_probs=53.6
Q ss_pred ccccccEEEEEeecCCCCCChHHHHHHHHHHHhcCCCEEEEeecCCCCcHHH--HHHHHh----hhhhcCC-ceeeccCc
Q 020346 73 PVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEV--LNTWKS----RLHTWGY-EPLFCSVE 145 (327)
Q Consensus 73 ~~anvD~lliv~~~~~p~~~~~~l~r~L~~a~~~~~~~~ivlnK~Dl~~~~~--~~~~~~----~~~~~~~-~~~~~s~~ 145 (327)
.+.++|.++++.++..+.. .....++..+...+.|+++|+||+|+..... ...... .+....+ +++.+|+.
T Consensus 88 ~~~~~dvii~v~d~~~~~~--~~~~~~~~~~~~~~~~~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vSa~ 165 (186)
T d1mkya2 88 SIEKADVVVIVLDATQGIT--RQDQRMAGLMERRGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFTSAD 165 (186)
T ss_dssp HHHHCSEEEEEEETTTCCC--HHHHHHHHHHHHTTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEEECBTT
T ss_pred HHhcCCEEEEeecccccch--hhHHHHHHHHHHcCCceeeeccchhhhcchhhhhhhHHHHHHHHhcccCCCeEEEEeCC
Confidence 4689999999999876432 2334445556778899999999999875432 111111 2222333 67889988
Q ss_pred chhhHHHHHhh
Q 020346 146 SKLGLDSLLQR 156 (327)
Q Consensus 146 ~~~~l~~l~~~ 156 (327)
++.+++.|...
T Consensus 166 ~g~gv~~L~~~ 176 (186)
T d1mkya2 166 KGWNIDRMIDA 176 (186)
T ss_dssp TTBSHHHHHHH
T ss_pred CCCCHHHHHHH
Confidence 88887766443
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=95.98 E-value=0.0018 Score=55.20 Aligned_cols=24 Identities=33% Similarity=0.638 Sum_probs=20.9
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcC
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g 181 (327)
++.+++++||+||||||.+=-|+.
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~ 28 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGR 28 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 468899999999999999877765
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=95.98 E-value=0.0016 Score=53.50 Aligned_cols=22 Identities=41% Similarity=0.471 Sum_probs=19.7
Q ss_pred CEEEEEcCCCCCHHHHHHHHcC
Q 020346 160 QTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 160 ~~v~lvG~sG~GKSTLln~L~g 181 (327)
-++||.|++||||||+.+.|.-
T Consensus 4 ~IIgitG~~gSGKstva~~l~~ 25 (191)
T d1uf9a_ 4 IIIGITGNIGSGKSTVAALLRS 25 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999964
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=95.96 E-value=0.0016 Score=54.11 Aligned_cols=23 Identities=39% Similarity=0.618 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHcCCC
Q 020346 161 TTVIVGPSGVGKSSLINALRSSP 183 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g~~ 183 (327)
+++|.|||||||||+-+.|+.+.
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~ 27 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEAL 27 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 78999999999999999998743
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=95.95 E-value=0.0025 Score=54.03 Aligned_cols=21 Identities=33% Similarity=0.765 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHcC
Q 020346 161 TTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g 181 (327)
.+.|.||||+||||+.++|+.
T Consensus 37 ~~L~~GPpGtGKT~lA~~la~ 57 (238)
T d1in4a2 37 HVLLAGPPGLGKTTLAHIIAS 57 (238)
T ss_dssp CEEEESSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHh
Confidence 588999999999999999997
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=95.89 E-value=0.0019 Score=54.70 Aligned_cols=24 Identities=38% Similarity=0.418 Sum_probs=22.3
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcC
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g 181 (327)
+|.++-|.|.||||||||.+.|..
T Consensus 23 kg~vIwltGlsGsGKTTia~~L~~ 46 (208)
T d1m7ga_ 23 RGLTIWLTGLSASGKSTLAVELEH 46 (208)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 788999999999999999999974
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=95.86 E-value=0.0019 Score=54.06 Aligned_cols=24 Identities=25% Similarity=0.375 Sum_probs=20.7
Q ss_pred CEEEEEcCCCCCHHHHHHHHcCCC
Q 020346 160 QTTVIVGPSGVGKSSLINALRSSP 183 (327)
Q Consensus 160 ~~v~lvG~sG~GKSTLln~L~g~~ 183 (327)
-+++|-|||||||||+-+.|+...
T Consensus 4 i~IaIdGp~GsGKgT~ak~La~~l 27 (223)
T d1q3ta_ 4 IQIAIDGPASSGKSTVAKIIAKDF 27 (223)
T ss_dssp CEEEEECSSCSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 357888999999999999999743
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=95.83 E-value=0.027 Score=46.25 Aligned_cols=83 Identities=22% Similarity=0.229 Sum_probs=54.4
Q ss_pred ccccccEEEEEeecCCCCCChHHHHHHHHHHHhcCCC-EEEEeecCCCCcHHHHHHH----HhhhhhcC---CceeeccC
Q 020346 73 PVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIP-LTLALNKVELVDEEVLNTW----KSRLHTWG---YEPLFCSV 144 (327)
Q Consensus 73 ~~anvD~lliv~~~~~p~~~~~~l~r~L~~a~~~~~~-~~ivlnK~Dl~~~~~~~~~----~~~~~~~~---~~~~~~s~ 144 (327)
.++.+|.++++.++..+.... .....+..+...+++ +++++||+|+.+....... ...+.... ++.+++|+
T Consensus 98 ~~~~~d~~ilvvda~~g~~~~-~t~e~~~~~~~~~~~~iiv~inK~D~~d~~~~~~~~~~~~~~~~~~~~~~~~iIpiSA 176 (195)
T d1kk1a3 98 GASLMDGAILVIAANEPCPRP-QTREHLMALQIIGQKNIIIAQNKIELVDKEKALENYRQIKEFIEGTVAENAPIIPISA 176 (195)
T ss_dssp CGGGCSEEEEEEETTSCSSCH-HHHHHHHHHHHHTCCCEEEEEECGGGSCHHHHHHHHHHHHHHHTTSTTTTCCEEECBT
T ss_pred ccccccccccccchhhhhhhh-hhHHHHHHHHHhcCccceeeeecccchhhHHHHHHHHHHHHHhccccCCCCeEEEEEC
Confidence 467899999999988754443 344455566666766 5667999999987533221 22233332 35688899
Q ss_pred cchhhHHHHHhh
Q 020346 145 ESKLGLDSLLQR 156 (327)
Q Consensus 145 ~~~~~l~~l~~~ 156 (327)
.++.+++.|...
T Consensus 177 ~~G~ni~~Ll~~ 188 (195)
T d1kk1a3 177 LHGANIDVLVKA 188 (195)
T ss_dssp TTTBSHHHHHHH
T ss_pred CCCCCHHHHHHH
Confidence 888888776543
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.82 E-value=0.0033 Score=52.96 Aligned_cols=51 Identities=22% Similarity=0.384 Sum_probs=32.7
Q ss_pred HHhhhhhcCCceeeccCcchhhHHHHHhhc-CC--CEEEEEcCCCCCHHHHHHHHcC
Q 020346 128 WKSRLHTWGYEPLFCSVESKLGLDSLLQRL-RD--QTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 128 ~~~~~~~~~~~~~~~s~~~~~~l~~l~~~l-~g--~~v~lvG~sG~GKSTLln~L~g 181 (327)
|.+.|+--.++.+. ++..+++.+...+ .+ ..+.|.||+|+||||++++|+.
T Consensus 5 w~eKyrP~~~~d~i---g~~~~~~~L~~~~~~~~~~~~ll~Gp~G~GKTt~a~~la~ 58 (224)
T d1sxjb2 5 WVEKYRPQVLSDIV---GNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAH 58 (224)
T ss_dssp HHHHTCCSSGGGCC---SCTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHH
T ss_pred hHhHhCCCCHHHhc---CCHHHHHHHHHHHHcCCCCeEEEECCCCCCchhhHHHHHH
Confidence 55555443443332 3345556665554 22 2478999999999999999875
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.78 E-value=0.0027 Score=53.13 Aligned_cols=24 Identities=29% Similarity=0.343 Sum_probs=21.9
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcC
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g 181 (327)
+|.++.|.|+||+|||||...++-
T Consensus 33 ~G~~~li~G~pGsGKT~l~lq~~~ 56 (251)
T d1szpa2 33 TGSITELFGEFRTGKSQLCHTLAV 56 (251)
T ss_dssp SSSEEEEEESTTSSHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Confidence 789999999999999999987764
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.78 E-value=0.0024 Score=53.97 Aligned_cols=24 Identities=29% Similarity=0.329 Sum_probs=21.7
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcC
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g 181 (327)
+|..++|-|+.||||||+++.|..
T Consensus 2 rG~lI~ieG~dGsGKsT~~~~L~~ 25 (209)
T d1nn5a_ 2 RGALIVLEGVDRAGKSTQSRKLVE 25 (209)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHH
T ss_pred CeeEEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999998865
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.71 E-value=0.002 Score=52.28 Aligned_cols=21 Identities=19% Similarity=0.547 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHcC
Q 020346 161 TTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g 181 (327)
.+++||..|||||||++.+..
T Consensus 4 KivllG~~~vGKTsl~~r~~~ 24 (195)
T d1svsa1 4 KLLLLGAGESGKSTIVKQMKI 24 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhh
Confidence 589999999999999999876
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.69 E-value=0.0022 Score=52.26 Aligned_cols=21 Identities=29% Similarity=0.577 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHcC
Q 020346 161 TTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g 181 (327)
.++++|.+|||||||++.+..
T Consensus 4 Kiv~lG~~~vGKTsll~r~~~ 24 (200)
T d2bcjq2 4 KLLLLGTGESGKSTFIKQMRI 24 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 589999999999999999976
|
| >d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain species: Pseudomonas syringae pv. tomato [TaxId: 323]
Probab=95.64 E-value=0.0024 Score=54.77 Aligned_cols=21 Identities=33% Similarity=0.376 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHcC
Q 020346 161 TTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g 181 (327)
+++++|.-++|||||++.|+.
T Consensus 11 ~i~viGHVd~GKSTL~~~Ll~ 31 (222)
T d1zunb3 11 RFLTCGNVDDGKSTLIGRLLH 31 (222)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHHH
Confidence 479999999999999999964
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.52 E-value=0.0049 Score=49.67 Aligned_cols=85 Identities=14% Similarity=0.121 Sum_probs=55.5
Q ss_pred cccccccccEEEEEeecCCCCCChHHHHHHHHHHH--hcCCCEEEEeecCCCCcHHHHHHHHhhhhhcCCceeeccCcch
Q 020346 70 LDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE--STGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVESK 147 (327)
Q Consensus 70 ~r~~~anvD~lliv~~~~~p~~~~~~l~r~L~~a~--~~~~~~~ivlnK~Dl~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 147 (327)
.+....++|.+++++++..+. +...+.+++.... ....|+++|.||.|+.+.....+........+++.+.+|+...
T Consensus 69 ~~~~~~~~~~~ilv~d~~~~~-Sf~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~e~Sak~~ 147 (170)
T d1i2ma_ 69 RDGYYIQAQCAIIMFDVTSRV-TYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSN 147 (170)
T ss_dssp GGGGTTTCCEEEEEEETTSGG-GGTTHHHHHHHHHHHHCSCCEEEEEECCCCSCSCCTTTSHHHHSSCSSEEEEEBTTTT
T ss_pred cchhcccccchhhcccccccc-ccchhHHHHHHHhhccCCCceeeecchhhhhhhhhhhHHHHHHHHcCCEEEEEeCCCC
Confidence 334578999999999998753 3334555543332 4578999999999997653222222233445677788898877
Q ss_pred hhHHHHHh
Q 020346 148 LGLDSLLQ 155 (327)
Q Consensus 148 ~~l~~l~~ 155 (327)
.+++++-.
T Consensus 148 ~~v~e~f~ 155 (170)
T d1i2ma_ 148 YNFEKPFL 155 (170)
T ss_dssp BTTTHHHH
T ss_pred CCHHHHHH
Confidence 76665533
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=95.50 E-value=0.0035 Score=53.16 Aligned_cols=22 Identities=23% Similarity=0.483 Sum_probs=20.4
Q ss_pred CEEEEEcCCCCCHHHHHHHHcC
Q 020346 160 QTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 160 ~~v~lvG~sG~GKSTLln~L~g 181 (327)
..+.|.||+|+||||+++.|+.
T Consensus 44 ~~lll~GppGtGKT~l~~~l~~ 65 (276)
T d1fnna2 44 PRATLLGRPGTGKTVTLRKLWE 65 (276)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999986
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=95.45 E-value=0.0034 Score=53.59 Aligned_cols=24 Identities=25% Similarity=0.400 Sum_probs=20.4
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcC
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g 181 (327)
+..++++|||+||||||.+=-|+.
T Consensus 10 ~p~vi~lvGptGvGKTTTiAKLAa 33 (213)
T d1vmaa2 10 PPFVIMVVGVNGTGKTTSCGKLAK 33 (213)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999877765
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.44 E-value=0.007 Score=48.19 Aligned_cols=82 Identities=17% Similarity=0.203 Sum_probs=54.5
Q ss_pred cccccccEEEEEeecCCCCCChHHHHHHHHHHH--hcCCCEEEEeecCCCCcHHH--HHHHHhhhhhcCCceeeccCcch
Q 020346 72 PPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE--STGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLFCSVESK 147 (327)
Q Consensus 72 ~~~anvD~lliv~~~~~p~~~~~~l~r~L~~a~--~~~~~~~ivlnK~Dl~~~~~--~~~~~~~~~~~~~~~~~~s~~~~ 147 (327)
....++|.+++|+++..+. +...+.+++.... ..+.|+++|.||+|+.++.. .+......+.++++.+.+|+.++
T Consensus 70 ~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~iilVgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g 148 (164)
T d1z2aa1 70 AYYRGAQACVLVFSTTDRE-SFEAISSWREKVVAEVGDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKED 148 (164)
T ss_dssp HHHTTCCEEEEEEETTCHH-HHHTHHHHHHHHHHHHCSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTTT
T ss_pred hhhccCceEEEEEeccchh-hhhhcccccccccccCCCceEEEeeccCCcccceeeeehhhHHHHHHcCCEEEEeccCCC
Confidence 3468999999999997643 3344555554433 45789999999999975421 11112223446778888899888
Q ss_pred hhHHHHH
Q 020346 148 LGLDSLL 154 (327)
Q Consensus 148 ~~l~~l~ 154 (327)
.+++.+-
T Consensus 149 ~~v~e~f 155 (164)
T d1z2aa1 149 LNVSEVF 155 (164)
T ss_dssp BSSHHHH
T ss_pred cCHHHHH
Confidence 7777653
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=95.42 E-value=0.0036 Score=53.17 Aligned_cols=23 Identities=26% Similarity=0.339 Sum_probs=20.1
Q ss_pred CCEEEEEcCCCCCHHHHHHHHcC
Q 020346 159 DQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 159 g~~v~lvG~sG~GKSTLln~L~g 181 (327)
..+++++||+||||||.+--|+.
T Consensus 10 ~~vi~lvGp~GvGKTTTiaKLA~ 32 (207)
T d1ls1a2 10 RNLWFLVGLQGSGKTTTAAKLAL 32 (207)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999988875
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=95.38 E-value=0.0037 Score=52.96 Aligned_cols=22 Identities=23% Similarity=0.566 Sum_probs=19.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHcC
Q 020346 160 QTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 160 ~~v~lvG~sG~GKSTLln~L~g 181 (327)
-.+.|+|.+|||||||++.+..
T Consensus 7 ~KilllG~~~vGKTsll~~~~~ 28 (221)
T d1azta2 7 HRLLLLGAGESGKSTIVKQMRI 28 (221)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 3689999999999999999864
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=95.37 E-value=0.0058 Score=51.97 Aligned_cols=48 Identities=19% Similarity=0.265 Sum_probs=38.0
Q ss_pred ccccccEEEEEeecCCCCCChHHHHHHHHHHHhcCCCEEEEeecCCCCcH
Q 020346 73 PVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDE 122 (327)
Q Consensus 73 ~~anvD~lliv~~~~~p~~~~~~l~r~L~~a~~~~~~~~ivlnK~Dl~~~ 122 (327)
.++.+|.+++|.++..+ +.. .-.+.+..+...++|+++++||+|+.+.
T Consensus 90 ~~~~~D~~ilVvda~~g-~~~-~~~~~~~~~~~~~~p~iivlNK~D~~~~ 137 (227)
T d1g7sa4 90 GGALADLAILIVDINEG-FKP-QTQEALNILRMYRTPFVVAANKIDRIHG 137 (227)
T ss_dssp SSBSCSEEEEEEETTTC-CCH-HHHHHHHHHHHTTCCEEEEEECGGGSTT
T ss_pred cccccceEEEEEecccC-ccc-chhHHHHHhhcCCCeEEEEEECccCCCc
Confidence 56789999999999763 343 3456666778889999999999999754
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=95.36 E-value=0.0038 Score=53.26 Aligned_cols=22 Identities=36% Similarity=0.590 Sum_probs=19.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHcC
Q 020346 160 QTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 160 ~~v~lvG~sG~GKSTLln~L~g 181 (327)
.+++++||+||||||.+--|+.
T Consensus 10 ~vi~lvGptGvGKTTTiAKLA~ 31 (211)
T d2qy9a2 10 FVILMVGVNGVGKTTTIGKLAR 31 (211)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999988875
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.36 E-value=0.0042 Score=52.49 Aligned_cols=24 Identities=29% Similarity=0.383 Sum_probs=22.4
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcC
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g 181 (327)
+|+.++|=|+-||||||++++|..
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~ 25 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYK 25 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEEECCCCCcHHHHHHHHHH
Confidence 589999999999999999999975
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.34 E-value=0.011 Score=47.36 Aligned_cols=83 Identities=14% Similarity=0.169 Sum_probs=52.4
Q ss_pred ccccccccEEEEEeecCCCCCChHHHHHHHHHHH----hcCCCEEEEeecCCCCcHHH--HHHHHhhhhhcCCceeeccC
Q 020346 71 DPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE----STGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLFCSV 144 (327)
Q Consensus 71 r~~~anvD~lliv~~~~~p~~~~~~l~r~L~~a~----~~~~~~~ivlnK~Dl~~~~~--~~~~~~~~~~~~~~~~~~s~ 144 (327)
+....++|.+++|+++..+ -+...+..++.... ....|+++|.||+|+.+..+ ..........++.+.+.+|+
T Consensus 66 ~~~~~~~d~~ilv~d~t~~-~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa 144 (168)
T d2gjsa1 66 GHCMAMGDAYVIVYSVTDK-GSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSA 144 (168)
T ss_dssp HHHHTSCSEEEEEEETTCH-HHHHHHHHHHHHHHHHCC--CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTSEEEECBT
T ss_pred ccchhhhhhhceecccccc-ccccccccccchhhcccccccceEEEeecccchhhhcchhHHHHHHHHHhcCCEEEEEeC
Confidence 3346799999999998764 23444555544332 23468999999999976421 11112223445777788898
Q ss_pred cchhhHHHHH
Q 020346 145 ESKLGLDSLL 154 (327)
Q Consensus 145 ~~~~~l~~l~ 154 (327)
.++.+++++-
T Consensus 145 k~~~~v~~~f 154 (168)
T d2gjsa1 145 ALHHNVQALF 154 (168)
T ss_dssp TTTBSHHHHH
T ss_pred CCCcCHHHHH
Confidence 8877776653
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=95.32 E-value=0.0041 Score=51.98 Aligned_cols=21 Identities=24% Similarity=0.436 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHcC
Q 020346 161 TTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g 181 (327)
++||.|.+||||||+.+.|..
T Consensus 4 iIgITG~igSGKStv~~~l~~ 24 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFTD 24 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999975
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=95.24 E-value=0.0037 Score=53.29 Aligned_cols=23 Identities=26% Similarity=0.410 Sum_probs=15.9
Q ss_pred CCEEEEEcCCCCCHHHHHHHHcC
Q 020346 159 DQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 159 g~~v~lvG~sG~GKSTLln~L~g 181 (327)
..+++||||+||||||.+=-|+.
T Consensus 12 p~vi~lvGptGvGKTTTiAKLA~ 34 (211)
T d1j8yf2 12 PYVIMLVGVQGTGKATTAGKLAY 34 (211)
T ss_dssp SEEEEEECSCCC----HHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999877775
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=95.21 E-value=0.0053 Score=51.13 Aligned_cols=24 Identities=21% Similarity=0.317 Sum_probs=21.6
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcC
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g 181 (327)
+|+.+.|.|+||+|||||...++-
T Consensus 33 ~G~l~~i~G~~G~GKT~~~l~~a~ 56 (258)
T d2i1qa2 33 SQSVTEFAGVFGSGKTQIMHQSCV 56 (258)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHH
Confidence 789999999999999999877764
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=95.20 E-value=0.0049 Score=52.03 Aligned_cols=23 Identities=30% Similarity=0.472 Sum_probs=20.6
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHc
Q 020346 158 RDQTTVIVGPSGVGKSSLINALR 180 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~ 180 (327)
+|..+.|.|+||+|||||.-.++
T Consensus 35 ~G~~~li~G~pGsGKT~~~lq~~ 57 (254)
T d1pzna2 35 TQAITEVFGEFGSGKTQLAHTLA 57 (254)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHH
Confidence 78999999999999999987654
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=95.19 E-value=0.0045 Score=48.86 Aligned_cols=78 Identities=17% Similarity=0.287 Sum_probs=51.1
Q ss_pred ccccccEEEEEeecCCCCC-ChHHHHHHHHHHHhcCCCEEEEeecCCCCcHHHHHHHHhhhhh-cCCceeeccCcchhhH
Q 020346 73 PVANVDHLLLLFSMDQPKL-EPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHT-WGYEPLFCSVESKLGL 150 (327)
Q Consensus 73 ~~anvD~lliv~~~~~p~~-~~~~l~r~L~~a~~~~~~~~ivlnK~Dl~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~l 150 (327)
...++|.++++.+...+.. ....+...+..-...++|+++|+||+||.++.. .+.. .+.+.+.+|+.++.++
T Consensus 77 ~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~iilv~NK~Dl~~~~~------~~~~~~~~~~~~iSAk~~~gi 150 (161)
T d2gj8a1 77 EIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETL------GMSEVNGHALIRLSARTGEGV 150 (161)
T ss_dssp HHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHHCCCC------EEEEETTEEEEECCTTTCTTH
T ss_pred HHHhccccceeeccccccchhhhhhhhhhhhhcccccceeeccchhhhhhhHH------HHHHhCCCcEEEEECCCCCCH
Confidence 3578999999988876533 333332222222335789999999999865421 1222 3457889999888888
Q ss_pred HHHHhh
Q 020346 151 DSLLQR 156 (327)
Q Consensus 151 ~~l~~~ 156 (327)
+.+...
T Consensus 151 ~~L~~~ 156 (161)
T d2gj8a1 151 DVLRNH 156 (161)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 877554
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=95.13 E-value=0.019 Score=48.05 Aligned_cols=49 Identities=27% Similarity=0.457 Sum_probs=37.2
Q ss_pred ccccccEEEEEeecCCCCCChHHHHHHHHHHHhcCCCE-EEEeecCCCCcHH
Q 020346 73 PVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPL-TLALNKVELVDEE 123 (327)
Q Consensus 73 ~~anvD~lliv~~~~~p~~~~~~l~r~L~~a~~~~~~~-~ivlnK~Dl~~~~ 123 (327)
.++.+|.+++|.++... ... +-.+.+..|...+.|. ++++||+|+.++.
T Consensus 87 ~~~~aD~avlVvda~~G-v~~-qt~~~~~~~~~~gi~~iiv~iNK~D~~~~~ 136 (204)
T d2c78a3 87 GAAQMDGAILVVSAADG-PMP-QTREHILLARQVGVPYIVVFMNKVDMVDDP 136 (204)
T ss_dssp HHTTCSSEEEEEETTTC-CCH-HHHHHHHHHHHTTCCCEEEEEECGGGCCCH
T ss_pred HHHHCCEEEEEEECCCC-CcH-HHHHHHHHHHHcCCCeEEEEEEecccCCCH
Confidence 57899999999999864 333 4566777788888874 5669999997643
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=95.12 E-value=0.0047 Score=55.63 Aligned_cols=22 Identities=32% Similarity=0.433 Sum_probs=19.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHcC
Q 020346 160 QTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 160 ~~v~lvG~sG~GKSTLln~L~g 181 (327)
-++||.|+|||||||+.+.|..
T Consensus 81 ~iIGIaG~sgSGKSTla~~L~~ 102 (308)
T d1sq5a_ 81 YIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCCCCCcHHHHHHHH
Confidence 4899999999999999988875
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=95.08 E-value=0.0053 Score=51.44 Aligned_cols=21 Identities=33% Similarity=0.536 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHcC
Q 020346 161 TTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g 181 (327)
++||.|.+||||||..+.|..
T Consensus 5 iIgitG~igSGKStv~~~l~~ 25 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFAD 25 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCcCCHHHHHHHHHH
Confidence 689999999999999999975
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=95.05 E-value=0.0051 Score=50.99 Aligned_cols=22 Identities=27% Similarity=0.471 Sum_probs=19.7
Q ss_pred CCCEEEEEcCCCCCHHHHHHHH
Q 020346 158 RDQTTVIVGPSGVGKSSLINAL 179 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L 179 (327)
+|..+.|.|+||+|||||.-.+
T Consensus 25 ~G~~~~I~G~~G~GKT~la~~~ 46 (242)
T d1tf7a1 25 IGRSTLVSGTSGTGKTLFSIQF 46 (242)
T ss_dssp TTSEEEEEESTTSSHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHH
Confidence 8999999999999999997543
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.00 E-value=0.017 Score=45.65 Aligned_cols=75 Identities=17% Similarity=0.167 Sum_probs=47.8
Q ss_pred ccccccEEEEEeecCCCCCChHHHHHHHHHHH----hcCCCEEEEeecCCCCcHHH--HHHHHhhhhhcCCceeeccCcc
Q 020346 73 PVANVDHLLLLFSMDQPKLEPFALTRFLVEAE----STGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLFCSVES 146 (327)
Q Consensus 73 ~~anvD~lliv~~~~~p~~~~~~l~r~L~~a~----~~~~~~~ivlnK~Dl~~~~~--~~~~~~~~~~~~~~~~~~s~~~ 146 (327)
...++|.+++|+++..|. +...+.+++.... ..+.|+++|.||.|+.++.+ .+........++++.+.+|+.+
T Consensus 72 ~~~~~d~~ilv~d~~~~~-s~~~~~~~~~~i~~~~~~~~~pi~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAkt 150 (165)
T d1z06a1 72 YYRNVHAVVFVYDMTNMA-SFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKN 150 (165)
T ss_dssp HHTTCCEEEEEEETTCHH-HHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSS
T ss_pred eecCCCceEEEEEeehhh-hhhhhhhhhHHHHhhccCCCCeEEEEeccccchhccchhHHHHHHHHHHCCCEEEEEeccc
Confidence 357999999999998652 3334555444332 23678999999999965421 1112233345677888888865
Q ss_pred hh
Q 020346 147 KL 148 (327)
Q Consensus 147 ~~ 148 (327)
..
T Consensus 151 ~~ 152 (165)
T d1z06a1 151 PN 152 (165)
T ss_dssp GG
T ss_pred CC
Confidence 43
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=94.98 E-value=0.0063 Score=53.14 Aligned_cols=23 Identities=35% Similarity=0.679 Sum_probs=21.0
Q ss_pred CCEEEEEcCCCCCHHHHHHHHcC
Q 020346 159 DQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 159 g~~v~lvG~sG~GKSTLln~L~g 181 (327)
...+.|.||||+|||+|+++|+.
T Consensus 45 ~~~iLL~GppGtGKT~la~~iA~ 67 (256)
T d1lv7a_ 45 PKGVLMVGPPGTGKTLLAKAIAG 67 (256)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEeeCCCCCCccHHHHHHHH
Confidence 45689999999999999999997
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=94.96 E-value=0.0033 Score=53.69 Aligned_cols=20 Identities=25% Similarity=0.365 Sum_probs=17.6
Q ss_pred EEEEcCCCCCHHHHHHHHcC
Q 020346 162 TVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 162 v~lvG~sG~GKSTLln~L~g 181 (327)
+.|.||||+||||+++.++.
T Consensus 49 l~l~GppGtGKT~l~~~l~~ 68 (287)
T d1w5sa2 49 YGSIGRVGIGKTTLAKFTVK 68 (287)
T ss_dssp EECTTCCSSSHHHHHHHHHH
T ss_pred EEeECCCCCCHHHHHHHHHH
Confidence 44569999999999999986
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=94.94 E-value=0.0076 Score=50.80 Aligned_cols=24 Identities=25% Similarity=0.545 Sum_probs=21.8
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcC
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g 181 (327)
+|..+.|.|+||+|||||...++-
T Consensus 25 ~gsl~li~G~pGsGKT~l~~qia~ 48 (242)
T d1tf7a2 25 KDSIILATGATGTGKTLLVSRFVE 48 (242)
T ss_dssp SSCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHH
Confidence 789999999999999999977765
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.93 E-value=0.014 Score=46.42 Aligned_cols=83 Identities=14% Similarity=0.254 Sum_probs=54.5
Q ss_pred ccccccEEEEEeecCCCCCChHHHHHHHHHHH----hcCCCEEEEeecCCCCcHHH-HHHHHhhhhhcCCceeeccCcch
Q 020346 73 PVANVDHLLLLFSMDQPKLEPFALTRFLVEAE----STGIPLTLALNKVELVDEEV-LNTWKSRLHTWGYEPLFCSVESK 147 (327)
Q Consensus 73 ~~anvD~lliv~~~~~p~~~~~~l~r~L~~a~----~~~~~~~ivlnK~Dl~~~~~-~~~~~~~~~~~~~~~~~~s~~~~ 147 (327)
...++|.++++++...+ .+...+.+++.... ..+.|+++|.||+|+.+... .+........++++.+.+|+.++
T Consensus 71 ~~~~~~~~iiv~d~~~~-~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~e~Sak~g 149 (166)
T d1ctqa_ 71 YMRTGEGFLCVFAINNT-KSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTR 149 (166)
T ss_dssp HHHHCSEEEEEEETTCH-HHHHTHHHHHHHHHHHHTCSSCCEEEEEECTTCSCCCSCHHHHHHHHHHHTCCEEECCTTTC
T ss_pred hhhcccccceeeccccc-ccHHHHHHHHHHHHHhcCCCCCeEEEEecccccccccccHHHHHHHHHHhCCeEEEEcCCCC
Confidence 46889999999998764 23334555544332 24578999999999965321 11112223445778889999998
Q ss_pred hhHHHHHhh
Q 020346 148 LGLDSLLQR 156 (327)
Q Consensus 148 ~~l~~l~~~ 156 (327)
.+++++-..
T Consensus 150 ~gi~e~f~~ 158 (166)
T d1ctqa_ 150 QGVEDAFYT 158 (166)
T ss_dssp TTHHHHHHH
T ss_pred cCHHHHHHH
Confidence 888877543
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=94.93 E-value=0.0062 Score=50.83 Aligned_cols=23 Identities=26% Similarity=0.413 Sum_probs=20.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHcCC
Q 020346 160 QTTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 160 ~~v~lvG~sG~GKSTLln~L~g~ 182 (327)
-.++|+|.-++|||||++.|++.
T Consensus 9 ini~iiGhVd~GKSTL~~~L~~~ 31 (205)
T d2qn6a3 9 VNIGVVGHVDHGKTTLVQAITGI 31 (205)
T ss_dssp EEEEEECSTTSSHHHHHHHHHSC
T ss_pred eEEEEEEccCCcHHHHHHHHHhh
Confidence 36999999999999999999983
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=94.92 E-value=0.0059 Score=52.90 Aligned_cols=23 Identities=22% Similarity=0.471 Sum_probs=20.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHcCC
Q 020346 160 QTTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 160 ~~v~lvG~sG~GKSTLln~L~g~ 182 (327)
..+.|.||||+|||+|.++|+..
T Consensus 41 ~~vLL~GppGtGKT~la~alA~~ 63 (246)
T d1d2na_ 41 VSVLLEGPPHSGKTALAAKIAEE 63 (246)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHhhc
Confidence 46899999999999999999873
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=94.89 E-value=0.018 Score=46.04 Aligned_cols=81 Identities=20% Similarity=0.293 Sum_probs=53.5
Q ss_pred ccccccEEEEEeecCCCCCChHHHHHHHHHHH----hcCCCEEEEeecCCCCcHHH--HHHHHhhhhhcCCceeeccCcc
Q 020346 73 PVANVDHLLLLFSMDQPKLEPFALTRFLVEAE----STGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLFCSVES 146 (327)
Q Consensus 73 ~~anvD~lliv~~~~~p~~~~~~l~r~L~~a~----~~~~~~~ivlnK~Dl~~~~~--~~~~~~~~~~~~~~~~~~s~~~ 146 (327)
...++|.+++|++...+. +...+..++.... ..+.|+++|.||.|+.+... .+........++.+.+.+|+.+
T Consensus 72 ~~~~~~~~ilv~d~~~~~-s~~~~~~~~~~i~~~~~~~~~piiivgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~ 150 (168)
T d1u8za_ 72 YFRSGEGFLCVFSITEME-SFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKT 150 (168)
T ss_dssp HHHHCSEEEEEEETTCHH-HHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTTT
T ss_pred cccccceeEEEeeccchh-hhhhHHHHHHHHHHhhCCCCCcEEEEeccccccccccccHHHHHHHHHHcCCeEEEEcCCC
Confidence 467999999999987642 3444555543332 34678999999999864321 1222333445677788899988
Q ss_pred hhhHHHHH
Q 020346 147 KLGLDSLL 154 (327)
Q Consensus 147 ~~~l~~l~ 154 (327)
+.+++++-
T Consensus 151 g~gv~e~f 158 (168)
T d1u8za_ 151 RANVDKVF 158 (168)
T ss_dssp CTTHHHHH
T ss_pred CcCHHHHH
Confidence 88777653
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.89 E-value=0.025 Score=45.32 Aligned_cols=81 Identities=15% Similarity=0.177 Sum_probs=51.5
Q ss_pred ccccccEEEEEeecCCCCCChHHHHHHHHHHH----hcCCCEEEEeecCCCCcHHH--HHHHHhhhhhcCCceeeccCcc
Q 020346 73 PVANVDHLLLLFSMDQPKLEPFALTRFLVEAE----STGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLFCSVES 146 (327)
Q Consensus 73 ~~anvD~lliv~~~~~p~~~~~~l~r~L~~a~----~~~~~~~ivlnK~Dl~~~~~--~~~~~~~~~~~~~~~~~~s~~~ 146 (327)
...++|.+++|+++..+ -+...+..+..... ....|+++|.||+||.+..+ .+........++++.+.+|+..
T Consensus 74 ~~~~~~~~ilvfd~t~~-~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~ 152 (172)
T d2g3ya1 74 CMQVGDAYLIVYSITDR-ASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAV 152 (172)
T ss_dssp CCCCCSEEEEEEETTCH-HHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTT
T ss_pred cccccceeeeeeccccc-chhhhhhhhhhhhhhccccCCceEEEEeccccccccccccHHHHHHHHHHcCCeEEEEeCCC
Confidence 46789999999998764 23344555433333 23679999999999865421 1111122234567778889888
Q ss_pred hhhHHHHH
Q 020346 147 KLGLDSLL 154 (327)
Q Consensus 147 ~~~l~~l~ 154 (327)
..+++.+-
T Consensus 153 g~~i~~~f 160 (172)
T d2g3ya1 153 QHNVKELF 160 (172)
T ss_dssp TBSHHHHH
T ss_pred CcCHHHHH
Confidence 87777653
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.88 E-value=0.025 Score=44.65 Aligned_cols=84 Identities=11% Similarity=0.206 Sum_probs=55.3
Q ss_pred cccccccEEEEEeecCCCCCChHHHHHHHHHH---HhcCCCEEEEeecCCCCcHHH--HHHHHhhhhhcCCceeeccCcc
Q 020346 72 PPVANVDHLLLLFSMDQPKLEPFALTRFLVEA---ESTGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLFCSVES 146 (327)
Q Consensus 72 ~~~anvD~lliv~~~~~p~~~~~~l~r~L~~a---~~~~~~~~ivlnK~Dl~~~~~--~~~~~~~~~~~~~~~~~~s~~~ 146 (327)
....++|.++++++...+. +...+.+++... .....|+++|.||.|+.+... .+........++++.+.+|+.+
T Consensus 68 ~~~~~~~~~ilv~d~~~~~-s~~~i~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~SAk~ 146 (164)
T d1yzqa1 68 SYIRDSAAAVVVYDITNVN-SFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKA 146 (164)
T ss_dssp HHHTTCSEEEEEEETTCHH-HHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTT
T ss_pred HHhhccceEEEeecccccc-chhhhHhhHHHHHHhcCCCceEEEEecccchhhhhhhhHHHHHHHHHHcCCEEEEecCCC
Confidence 3578999999999997652 333444444332 234678888999999965421 1222334455677888899988
Q ss_pred hhhHHHHHhh
Q 020346 147 KLGLDSLLQR 156 (327)
Q Consensus 147 ~~~l~~l~~~ 156 (327)
+.+++++-..
T Consensus 147 g~~v~e~f~~ 156 (164)
T d1yzqa1 147 GYNVKQLFRR 156 (164)
T ss_dssp CTTHHHHHHH
T ss_pred CcCHHHHHHH
Confidence 8877766544
|
| >d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor 2 (eEF-2), N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.82 E-value=0.0078 Score=54.89 Aligned_cols=20 Identities=25% Similarity=0.398 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHHc
Q 020346 161 TTVIVGPSGVGKSSLINALR 180 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~ 180 (327)
.++|+|+.++|||||+.+|+
T Consensus 19 NI~iiGhvd~GKTTL~d~Ll 38 (341)
T d1n0ua2 19 NMSVIAHVDHGKSTLTDSLV 38 (341)
T ss_dssp EEEEECCGGGTHHHHHHHHH
T ss_pred EEEEEeCCCCcHHHHHHHHH
Confidence 49999999999999999996
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.81 E-value=0.018 Score=46.23 Aligned_cols=81 Identities=14% Similarity=0.087 Sum_probs=52.9
Q ss_pred ccccccEEEEEeecCCCCCChHHHHHHHHHHH---hcCCCEEEEeecCCCCcHH--HHHHHHhhhhhcCCceeeccCcch
Q 020346 73 PVANVDHLLLLFSMDQPKLEPFALTRFLVEAE---STGIPLTLALNKVELVDEE--VLNTWKSRLHTWGYEPLFCSVESK 147 (327)
Q Consensus 73 ~~anvD~lliv~~~~~p~~~~~~l~r~L~~a~---~~~~~~~ivlnK~Dl~~~~--~~~~~~~~~~~~~~~~~~~s~~~~ 147 (327)
.+.++|.+++|++...|. +...+.+++.... ..+.|+++|.||+|+.+.. ............+.+.+.+|+.++
T Consensus 73 ~~~~~~~~i~v~d~~~~~-S~~~~~~~~~~i~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g 151 (175)
T d2f9la1 73 YYRGAVGALLVYDIAKHL-TYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDS 151 (175)
T ss_dssp HHTTCSEEEEEEETTCHH-HHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTC
T ss_pred HhhccCeEEEEEECCCcc-cchhHHHHHHHHHHhcCCCCcEEEEEeeecccccccchHHHHHHhhcccCceEEEEecCCC
Confidence 467899999999998652 3334555544433 2356899999999997542 111222333445677888998887
Q ss_pred hhHHHHH
Q 020346 148 LGLDSLL 154 (327)
Q Consensus 148 ~~l~~l~ 154 (327)
.+++++-
T Consensus 152 ~~i~e~f 158 (175)
T d2f9la1 152 TNVEEAF 158 (175)
T ss_dssp TTHHHHH
T ss_pred cCHHHHH
Confidence 7777653
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.79 E-value=0.0082 Score=50.38 Aligned_cols=33 Identities=24% Similarity=0.218 Sum_probs=25.7
Q ss_pred hHHHHHhhc-----CCCEEEEEcCCCCCHHHHHHHHcC
Q 020346 149 GLDSLLQRL-----RDQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 149 ~l~~l~~~l-----~g~~v~lvG~sG~GKSTLln~L~g 181 (327)
++..|+..+ +|.++.|.|+||+|||||.-.++.
T Consensus 22 Gi~~LD~~lgGGip~G~~~~i~G~~GsGKT~lalq~~~ 59 (258)
T d1v5wa_ 22 GSQEFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCV 59 (258)
T ss_dssp SCHHHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred CCHHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 344444444 789999999999999999877763
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.78 E-value=0.007 Score=49.88 Aligned_cols=21 Identities=33% Similarity=0.559 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHcC
Q 020346 161 TTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g 181 (327)
.|+|-|.-||||||+++.|..
T Consensus 2 lI~ieG~dGsGKST~~~~L~~ 22 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSG 22 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999875
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.69 E-value=0.026 Score=44.76 Aligned_cols=81 Identities=21% Similarity=0.246 Sum_probs=52.1
Q ss_pred ccccccEEEEEeecCCCCCChHHHHHHHHHHH----hcCCCEEEEeecCCCCcHHH--HHHHHhhhhhcCCceeeccCcc
Q 020346 73 PVANVDHLLLLFSMDQPKLEPFALTRFLVEAE----STGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLFCSVES 146 (327)
Q Consensus 73 ~~anvD~lliv~~~~~p~~~~~~l~r~L~~a~----~~~~~~~ivlnK~Dl~~~~~--~~~~~~~~~~~~~~~~~~s~~~ 146 (327)
...++|.++++++...+ -+...+..+..... ....|+++|.||+|+.+... ..........++.+.+.+|+.+
T Consensus 71 ~~~~a~~~ilv~d~~~~-~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sak~ 149 (167)
T d1kaoa_ 71 YIKNGQGFILVYSLVNQ-QSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKS 149 (167)
T ss_dssp HHHHCSEEEEEEETTCH-HHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTC
T ss_pred Hhhcccceeeeeeecch-hhhhhhhchhhhhhhhccCCCCCEEEEEEccchhhcccchHHHHHHHHHHcCCeEEEECCCC
Confidence 45789999999998764 23334554443332 24568999999999865321 1111222344567778899988
Q ss_pred hhhHHHHH
Q 020346 147 KLGLDSLL 154 (327)
Q Consensus 147 ~~~l~~l~ 154 (327)
+.+++++-
T Consensus 150 g~~i~e~f 157 (167)
T d1kaoa_ 150 KTMVDELF 157 (167)
T ss_dssp HHHHHHHH
T ss_pred CcCHHHHH
Confidence 88877653
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=94.67 E-value=0.043 Score=44.08 Aligned_cols=82 Identities=18% Similarity=0.230 Sum_probs=46.3
Q ss_pred cccccEEEEEeecCCCC-CChHHH---HHHHHHHH---hcCCCEEEEeecCCCCcHHHHH-HHHhhhhhcCCceeeccCc
Q 020346 74 VANVDHLLLLFSMDQPK-LEPFAL---TRFLVEAE---STGIPLTLALNKVELVDEEVLN-TWKSRLHTWGYEPLFCSVE 145 (327)
Q Consensus 74 ~anvD~lliv~~~~~p~-~~~~~l---~r~L~~a~---~~~~~~~ivlnK~Dl~~~~~~~-~~~~~~~~~~~~~~~~s~~ 145 (327)
+.++|.++.+....... ...... ......+. ..++|+++|+||+|+.+..... .+...+ ..+++++.+|+.
T Consensus 77 ~~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ivv~NK~Dl~~~~~~~~~~~~~~-~~~~~v~~iSA~ 155 (185)
T d1lnza2 77 IERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAAENLEAFKEKL-TDDYPVFPISAV 155 (185)
T ss_dssp HHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHHHHHHHHHHHC-CSCCCBCCCSSC
T ss_pred HHHhhhhhheeeecccccchhhhhhhhhhhccchhhhhccCCcchhhccccchHhHHHHHHHHHHHh-ccCCcEEEEECC
Confidence 45677777666554332 222221 11111111 1357889999999998765432 222222 235678888988
Q ss_pred chhhHHHHHhh
Q 020346 146 SKLGLDSLLQR 156 (327)
Q Consensus 146 ~~~~l~~l~~~ 156 (327)
++.+++.+...
T Consensus 156 ~g~Gi~~L~~~ 166 (185)
T d1lnza2 156 TREGLRELLFE 166 (185)
T ss_dssp CSSTTHHHHHH
T ss_pred CCCCHHHHHHH
Confidence 88877776443
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=94.64 E-value=0.007 Score=52.51 Aligned_cols=23 Identities=39% Similarity=0.751 Sum_probs=20.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHcCC
Q 020346 160 QTTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 160 ~~v~lvG~sG~GKSTLln~L~g~ 182 (327)
.-+.|.||+|+|||+|.++|+..
T Consensus 43 ~giLl~GppGtGKT~la~aia~~ 65 (247)
T d1ixza_ 43 KGVLLVGPPGVGKTHLARAVAGE 65 (247)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEecCCCCChhHHHHHHHHH
Confidence 45899999999999999999974
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.60 E-value=0.028 Score=44.95 Aligned_cols=83 Identities=13% Similarity=0.180 Sum_probs=53.8
Q ss_pred ccccccEEEEEeecCCCCCChHHHHHHHHHH----HhcCCCEEEEeecCCCCcHHH--HHHHHhhhhhcCCceeeccCcc
Q 020346 73 PVANVDHLLLLFSMDQPKLEPFALTRFLVEA----ESTGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLFCSVES 146 (327)
Q Consensus 73 ~~anvD~lliv~~~~~p~~~~~~l~r~L~~a----~~~~~~~~ivlnK~Dl~~~~~--~~~~~~~~~~~~~~~~~~s~~~ 146 (327)
...++|.+++|++...+ .+...+..++... .....|+++|.||.|+.+... ...........+++.+.+|+.+
T Consensus 74 ~~~~~~~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sak~ 152 (173)
T d2fn4a1 74 YMRAGHGFLLVFAINDR-QSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKL 152 (173)
T ss_dssp HHHHCSEEEEEEETTCH-HHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTTT
T ss_pred hhccceeeeeecccccc-cccchhhhhhHHHHHHhccCCCceEEEEEeechhhccccchhhhhHHHHhcCCEEEEEeCCC
Confidence 46789999999999764 2334455553332 235678899999999865321 1112223344677788899988
Q ss_pred hhhHHHHHhh
Q 020346 147 KLGLDSLLQR 156 (327)
Q Consensus 147 ~~~l~~l~~~ 156 (327)
..+++.+-..
T Consensus 153 g~gv~e~f~~ 162 (173)
T d2fn4a1 153 RLNVDEAFEQ 162 (173)
T ss_dssp TBSHHHHHHH
T ss_pred CcCHHHHHHH
Confidence 8887776443
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=94.55 E-value=0.0093 Score=51.53 Aligned_cols=34 Identities=18% Similarity=0.316 Sum_probs=26.2
Q ss_pred hhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcC
Q 020346 148 LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 148 ~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g 181 (327)
+.|+++..=+ +|+.+.|.|+||+|||||+..|+-
T Consensus 23 ~~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~ 57 (277)
T d1cr2a_ 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQAL 57 (277)
T ss_dssp TTHHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHH
T ss_pred hhHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 4566654213 899999999999999999877763
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.55 E-value=0.015 Score=46.42 Aligned_cols=83 Identities=13% Similarity=0.195 Sum_probs=51.4
Q ss_pred cccccccEEEEEeecCCCCCChHHHHHHHHHH---HhcCCCEEEEeecCCCCcHHH--HHHHHhhhhhcCCceeeccCcc
Q 020346 72 PPVANVDHLLLLFSMDQPKLEPFALTRFLVEA---ESTGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLFCSVES 146 (327)
Q Consensus 72 ~~~anvD~lliv~~~~~p~~~~~~l~r~L~~a---~~~~~~~~ivlnK~Dl~~~~~--~~~~~~~~~~~~~~~~~~s~~~ 146 (327)
.-+.++|.+++|+++..+. +...+.++.... .....++++|.||.|+.+... .+........++++.+.+|+.+
T Consensus 73 ~~~~~ad~~ilv~d~~~~~-s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sak~ 151 (169)
T d3raba_ 73 AYYRGAMGFILMYDITNEE-SFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKD 151 (169)
T ss_dssp TTTTTCCEEEEEEETTCHH-HHHTHHHHHHHHHHHCCSCCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTT
T ss_pred HHHhcCCEEEEEEECccch-hhhhhhhhhhhhhcccCCcceEEEEEeecccccccccchhhhHHHHHHcCCEEEEecCCC
Confidence 3478999999999987642 222333333222 234556778889999865321 1112223345678889999988
Q ss_pred hhhHHHHHh
Q 020346 147 KLGLDSLLQ 155 (327)
Q Consensus 147 ~~~l~~l~~ 155 (327)
+.+++++-.
T Consensus 152 g~gv~e~f~ 160 (169)
T d3raba_ 152 NINVKQTFE 160 (169)
T ss_dssp TBSHHHHHH
T ss_pred CcCHHHHHH
Confidence 777776533
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.54 E-value=0.0072 Score=51.20 Aligned_cols=21 Identities=33% Similarity=0.539 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHcC
Q 020346 161 TTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g 181 (327)
.+.|.||+|+||||++++++.
T Consensus 35 ~lll~Gp~G~GKTt~~~~la~ 55 (252)
T d1sxje2 35 HLLLYGPNGTGKKTRCMALLE 55 (252)
T ss_dssp CEEEECSTTSSHHHHHHTHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999876
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=94.54 E-value=0.0091 Score=49.39 Aligned_cols=25 Identities=36% Similarity=0.422 Sum_probs=21.9
Q ss_pred cCCCEEEEEcCCCCCHHHHHHHHcC
Q 020346 157 LRDQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 157 l~g~~v~lvG~sG~GKSTLln~L~g 181 (327)
+.|.-+.|.|+||+|||||.-.|..
T Consensus 12 ~~g~gvl~~G~sG~GKStlal~l~~ 36 (176)
T d1kkma_ 12 IYGLGVLITGDSGVGKSETALELVQ 36 (176)
T ss_dssp ETTEEEEEECCTTSCHHHHHHHHHH
T ss_pred ECCEEEEEEeCCCCCHHHHHHHHHH
Confidence 4788899999999999999887765
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.53 E-value=0.029 Score=44.68 Aligned_cols=83 Identities=14% Similarity=0.193 Sum_probs=53.3
Q ss_pred ccccccEEEEEeecCCCCCChHHHHHHHHH----HHhcCCCEEEEeecCCCCcHH--HHHHHHhhhhhcCCceeeccCcc
Q 020346 73 PVANVDHLLLLFSMDQPKLEPFALTRFLVE----AESTGIPLTLALNKVELVDEE--VLNTWKSRLHTWGYEPLFCSVES 146 (327)
Q Consensus 73 ~~anvD~lliv~~~~~p~~~~~~l~r~L~~----a~~~~~~~~ivlnK~Dl~~~~--~~~~~~~~~~~~~~~~~~~s~~~ 146 (327)
...++|.+++|++...|. +...+.+++.. ......|+++|.||.|+.++. ...........++++.+.+|+.+
T Consensus 73 ~~~~~~~~ilv~d~~~~~-s~~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~ 151 (171)
T d2erya1 73 YMRTGEGFLLVFSVTDRG-SFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQVTQEEGQQLARQLKVTYMEASAKI 151 (171)
T ss_dssp HHHHCSEEEEEEETTCHH-HHHTHHHHHHHHHHHHTSSCCSEEEEEECTTCTTSCSSCHHHHHHHHHHTTCEEEECBTTT
T ss_pred cccccceEEEeecccccc-chhhHHHHhHHHHhhcccCCCCEEEEEeccchhhhccchHHHHHHHHHHcCCEEEEEcCCC
Confidence 457899999999988753 33344444332 223467889999999986431 11122233445677888899988
Q ss_pred hhhHHHHHhh
Q 020346 147 KLGLDSLLQR 156 (327)
Q Consensus 147 ~~~l~~l~~~ 156 (327)
..+++.+-..
T Consensus 152 ~~~i~e~f~~ 161 (171)
T d2erya1 152 RMNVDQAFHE 161 (171)
T ss_dssp TBSHHHHHHH
T ss_pred CcCHHHHHHH
Confidence 8777766443
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=94.51 E-value=0.015 Score=49.10 Aligned_cols=47 Identities=21% Similarity=0.383 Sum_probs=30.9
Q ss_pred cCCceeeccCcchhhHHHHHhhc--CCC---EEEEEcCCCCCHHHHHHHHcC
Q 020346 135 WGYEPLFCSVESKLGLDSLLQRL--RDQ---TTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 135 ~~~~~~~~s~~~~~~l~~l~~~l--~g~---~v~lvG~sG~GKSTLln~L~g 181 (327)
..|+.+.++-.+..+..-+...+ +|. .+.|.|++|+|||-|++++..
T Consensus 7 ~tFdnF~vg~~N~~a~~~~~~~~~~~~~~~n~l~l~G~~G~GKTHLl~A~~~ 58 (213)
T d1l8qa2 7 YTLENFIVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGN 58 (213)
T ss_dssp CCSSSCCCCTTTHHHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHH
T ss_pred CChhhccCCCcHHHHHHHHHHHHhCcCCCCCcEEEECCCCCcHHHHHHHHHH
Confidence 45666655544544443333322 232 378999999999999999986
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.51 E-value=0.019 Score=45.84 Aligned_cols=87 Identities=17% Similarity=0.118 Sum_probs=56.1
Q ss_pred ccccccccccccEEEEEeecCCCCCChHHHHHHHHHHH---hcCCCEEEEeecCCCCcHHHH--HHHHhhhhhcCCceee
Q 020346 67 TEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE---STGIPLTLALNKVELVDEEVL--NTWKSRLHTWGYEPLF 141 (327)
Q Consensus 67 ~~l~r~~~anvD~lliv~~~~~p~~~~~~l~r~L~~a~---~~~~~~~ivlnK~Dl~~~~~~--~~~~~~~~~~~~~~~~ 141 (327)
..+.+....++|.++++++...+. +...+..++.... ..+.|+++|.||+|+...... ..........+++.+.
T Consensus 68 ~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e 146 (174)
T d2bmea1 68 RSVTRSYYRGAAGALLVYDITSRE-TYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLE 146 (174)
T ss_dssp HHHHHTTSTTCSEEEEEEETTCHH-HHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEE
T ss_pred hhhHHHHhhhCCEEEEEEecccch-hHHHHhhhhcccccccCCceEEEEEEecccccchhchhhhHHHHHHHhCCCEEEE
Confidence 333445678999999999998652 3334444444333 346799999999998653211 1112223446778888
Q ss_pred ccCcchhhHHHHH
Q 020346 142 CSVESKLGLDSLL 154 (327)
Q Consensus 142 ~s~~~~~~l~~l~ 154 (327)
+|+.+..+++.+-
T Consensus 147 ~Sak~~~gi~e~f 159 (174)
T d2bmea1 147 TSALTGENVEEAF 159 (174)
T ss_dssp CCTTTCTTHHHHH
T ss_pred eeCCCCcCHHHHH
Confidence 9998888777763
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=94.51 E-value=0.0045 Score=55.21 Aligned_cols=21 Identities=24% Similarity=0.487 Sum_probs=16.5
Q ss_pred EEEEEcCCCCCHHHHHHHHcC
Q 020346 161 TTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g 181 (327)
++||.|+|||||||+.+.|..
T Consensus 6 IIgIaG~SGSGKTTva~~l~~ 26 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQ 26 (288)
T ss_dssp EEEEESCC---CCTHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHH
Confidence 799999999999999998875
|
| >d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=94.50 E-value=0.016 Score=48.55 Aligned_cols=35 Identities=26% Similarity=0.535 Sum_probs=26.0
Q ss_pred hhhHHHHHhhc---CCCEEEEEcCCCCCHHHHHHHHcC
Q 020346 147 KLGLDSLLQRL---RDQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 147 ~~~l~~l~~~l---~g~~v~lvG~sG~GKSTLln~L~g 181 (327)
..-++.+...+ ....+.|||+||+|||+++..|+.
T Consensus 28 d~Ei~~l~~iL~r~~k~n~lLvG~pGVGKTalv~~LA~ 65 (195)
T d1jbka_ 28 DEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQ 65 (195)
T ss_dssp HHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCCeEEEecCCcccHHHHHHHHH
Confidence 33455554444 334789999999999999999886
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=94.43 E-value=0.0096 Score=49.27 Aligned_cols=25 Identities=28% Similarity=0.367 Sum_probs=22.2
Q ss_pred cCCCEEEEEcCCCCCHHHHHHHHcC
Q 020346 157 LRDQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 157 l~g~~v~lvG~sG~GKSTLln~L~g 181 (327)
+.|.-+.|.|+||+|||||.-.|..
T Consensus 13 ~~g~gvli~G~sG~GKS~lal~l~~ 37 (177)
T d1knxa2 13 VFGVGVLLTGRSGIGKSECALDLIN 37 (177)
T ss_dssp ETTEEEEEEESSSSSHHHHHHHHHT
T ss_pred ECCEEEEEEcCCCCCHHHHHHHHHH
Confidence 4688899999999999999988776
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=94.42 E-value=0.016 Score=50.97 Aligned_cols=35 Identities=34% Similarity=0.570 Sum_probs=25.8
Q ss_pred hhhHHHHHhhc---CCCEEEEEcCCCCCHHHHHHHHcC
Q 020346 147 KLGLDSLLQRL---RDQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 147 ~~~l~~l~~~l---~g~~v~lvG~sG~GKSTLln~L~g 181 (327)
..-++.+...+ ....+.|||+||||||+++..|+.
T Consensus 24 d~Ei~~l~~iL~r~~k~n~lLVG~~GvGKTalv~~la~ 61 (268)
T d1r6bx2 24 EKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAW 61 (268)
T ss_dssp HHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCccCCcEEECCCCCcHHHHHHHHHH
Confidence 33355554443 345789999999999999999886
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.37 E-value=0.028 Score=44.66 Aligned_cols=83 Identities=17% Similarity=0.254 Sum_probs=50.4
Q ss_pred ccccccEEEEEeecCCCCCChHHHHHH---HHHH--HhcCCCEEEEeecCCCCcHHH--HHHHHhhhhhcCCceeeccCc
Q 020346 73 PVANVDHLLLLFSMDQPKLEPFALTRF---LVEA--ESTGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLFCSVE 145 (327)
Q Consensus 73 ~~anvD~lliv~~~~~p~~~~~~l~r~---L~~a--~~~~~~~~ivlnK~Dl~~~~~--~~~~~~~~~~~~~~~~~~s~~ 145 (327)
...++|.+++|+++..|. +...+..+ +... .....|+++|.||+|+.+..+ .+........++++.+.+|+.
T Consensus 70 ~~~~a~~~ilv~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~v~~~e~~~~~~~~~~~~~e~Sak 148 (171)
T d2erxa1 70 SISKGHAFILVYSITSRQ-SLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAK 148 (171)
T ss_dssp HHHHCSEEEEEEETTCHH-HHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTT
T ss_pred cccceeEEEEEeeccccc-chhcccchhhhhhhhhccCCCCcEEEEeecccccccccccHHHHHHHHHHcCCeEEEEcCC
Confidence 467899999999987642 22223333 2222 235678999999999965421 111122234456778888998
Q ss_pred chhhHHHHHhh
Q 020346 146 SKLGLDSLLQR 156 (327)
Q Consensus 146 ~~~~l~~l~~~ 156 (327)
+..+++++-..
T Consensus 149 ~~~~v~e~f~~ 159 (171)
T d2erxa1 149 LNHNVKELFQE 159 (171)
T ss_dssp TTBSHHHHHHH
T ss_pred CCcCHHHHHHH
Confidence 88887776433
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.35 E-value=0.0088 Score=51.93 Aligned_cols=23 Identities=26% Similarity=0.590 Sum_probs=20.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHcCC
Q 020346 160 QTTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 160 ~~v~lvG~sG~GKSTLln~L~g~ 182 (327)
.-+.|.||||+|||+|+++++..
T Consensus 39 ~giLL~GppGtGKT~l~~ala~~ 61 (258)
T d1e32a2 39 RGILLYGPPGTGKTLIARAVANE 61 (258)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceeEEecCCCCCchHHHHHHHHH
Confidence 45899999999999999999984
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=94.35 E-value=0.015 Score=52.12 Aligned_cols=21 Identities=33% Similarity=0.669 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHcC
Q 020346 161 TTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g 181 (327)
.+.|+||||+|||.|.+.|+.
T Consensus 54 ~~lf~Gp~GvGKT~lak~la~ 74 (315)
T d1r6bx3 54 SFLFAGPTGVGKTEVTVQLSK 74 (315)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCcchhHHHHHHHHh
Confidence 788999999999999999986
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=94.33 E-value=0.012 Score=52.47 Aligned_cols=33 Identities=30% Similarity=0.359 Sum_probs=26.6
Q ss_pred hHHHHHhhcCCCEEEEEcCCCCCHHHHHHHHcC
Q 020346 149 GLDSLLQRLRDQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 149 ~l~~l~~~l~g~~v~lvG~sG~GKSTLln~L~g 181 (327)
+++-+.-..+|++.+|+|++|+|||||+..|..
T Consensus 33 ~ID~l~PigrGQr~~I~g~~g~GKT~l~~~i~~ 65 (289)
T d1xpua3 33 VLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQ 65 (289)
T ss_dssp HHHHHSCCBTTCEEEEEECSSSSHHHHHHHHHH
T ss_pred eeeecccccCCCeeeEeCCCCCCHHHHHHHHHH
Confidence 444443334999999999999999999988876
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.21 E-value=0.0084 Score=52.36 Aligned_cols=24 Identities=29% Similarity=0.594 Sum_probs=21.7
Q ss_pred CCEEEEEcCCCCCHHHHHHHHcCC
Q 020346 159 DQTTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 159 g~~v~lvG~sG~GKSTLln~L~g~ 182 (327)
...+.|.||||+|||+|+++|++.
T Consensus 41 ~~giLL~Gp~GtGKT~l~~ala~~ 64 (265)
T d1r7ra3 41 SKGVLFYGPPGCGKTLLAKAIANE 64 (265)
T ss_dssp CCEEEEBCCTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcchhHHHHHHHH
Confidence 467899999999999999999984
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=94.17 E-value=0.061 Score=43.04 Aligned_cols=83 Identities=12% Similarity=0.037 Sum_probs=51.6
Q ss_pred ccccccccEEEEEeecCCCCCChHHHHHHHHHH----HhcCCCEEEEeecCCCCcH---HHHHHHH--hhhhhcCCceee
Q 020346 71 DPPVANVDHLLLLFSMDQPKLEPFALTRFLVEA----ESTGIPLTLALNKVELVDE---EVLNTWK--SRLHTWGYEPLF 141 (327)
Q Consensus 71 r~~~anvD~lliv~~~~~p~~~~~~l~r~L~~a----~~~~~~~~ivlnK~Dl~~~---~~~~~~~--~~~~~~~~~~~~ 141 (327)
+....++|.++++++...+. +......++... ...+.|+++|.||+|+.+. .+..... ......+++.+.
T Consensus 79 ~~~~~~~~~ii~v~d~~d~~-s~~~~~~~l~~~~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~e 157 (182)
T d1moza_ 79 RCYYADTAAVIFVVDSTDKD-RMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVA 157 (182)
T ss_dssp GGTTTTEEEEEEEEETTCTT-THHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHTTTTTCCSSCEEEEE
T ss_pred HhhhccceeEEEEeeecccc-cchhHHHHHHHHHHhhccCCcceEEEEEeeccccccCHHHHHHHHHHHHHhhCCCEEEE
Confidence 34567999999999987653 344444444332 2346789999999999642 2222111 112333456788
Q ss_pred ccCcchhhHHHHH
Q 020346 142 CSVESKLGLDSLL 154 (327)
Q Consensus 142 ~s~~~~~~l~~l~ 154 (327)
+|+.++.+++++-
T Consensus 158 ~SA~~g~gv~e~~ 170 (182)
T d1moza_ 158 SSAIKGEGITEGL 170 (182)
T ss_dssp EBGGGTBTHHHHH
T ss_pred EECCCCCCHHHHH
Confidence 8998888777653
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=94.06 E-value=0.021 Score=45.45 Aligned_cols=84 Identities=14% Similarity=0.147 Sum_probs=51.3
Q ss_pred cccccccEEEEEeecCCCCCChHHHHHHHHH----HHhcCCCEEEEeecCCCCcHHHHHHHHhh-----hhhcCCceeec
Q 020346 72 PPVANVDHLLLLFSMDQPKLEPFALTRFLVE----AESTGIPLTLALNKVELVDEEVLNTWKSR-----LHTWGYEPLFC 142 (327)
Q Consensus 72 ~~~anvD~lliv~~~~~p~~~~~~l~r~L~~----a~~~~~~~~ivlnK~Dl~~~~~~~~~~~~-----~~~~~~~~~~~ 142 (327)
....++|.+++++++..+ .+......++.. ....++|+++|.||.|+.+.......... .....++.+.+
T Consensus 79 ~~~~~~~~ii~v~d~~d~-~s~~~~~~~~~~~~~~~~~~~~pillv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (176)
T d1fzqa_ 79 SYFENTDILIYVIDSADR-KRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSC 157 (176)
T ss_dssp HHHTTCSEEEEEEETTCG-GGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEEC
T ss_pred HHhhccceeEEeeccccc-cchhhhhhhhhhhhhhhccCCCeEEEEEEeccccccccHHHHHHHHHHHHHHhcCCEEEEE
Confidence 356889999999998754 233333333222 22346799999999999754322222111 12224467788
Q ss_pred cCcchhhHHHHHhh
Q 020346 143 SVESKLGLDSLLQR 156 (327)
Q Consensus 143 s~~~~~~l~~l~~~ 156 (327)
|+.++.+++++-..
T Consensus 158 SA~tg~gv~e~~~~ 171 (176)
T d1fzqa_ 158 SALTGEGVQDGMNW 171 (176)
T ss_dssp CTTTCTTHHHHHHH
T ss_pred eCCCCCCHHHHHHH
Confidence 99888888775443
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.84 E-value=0.069 Score=42.28 Aligned_cols=82 Identities=11% Similarity=0.174 Sum_probs=50.3
Q ss_pred cccccccEEEEEeecCCCCCChHHHHHHHHHHH-------hcCCCEEEEeecCCCCcHHH---HHHHHhhhhhcC-Ccee
Q 020346 72 PPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE-------STGIPLTLALNKVELVDEEV---LNTWKSRLHTWG-YEPL 140 (327)
Q Consensus 72 ~~~anvD~lliv~~~~~p~~~~~~l~r~L~~a~-------~~~~~~~ivlnK~Dl~~~~~---~~~~~~~~~~~~-~~~~ 140 (327)
.....+|.+++++++..+. +...+..++.... ....|+++|.||+|+.+... ..........++ ++.+
T Consensus 71 ~~~~~~~~~ilv~d~~~~~-s~~~~~~~~~~i~~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~ 149 (175)
T d1ky3a_ 71 AFYRGADCCVLVYDVTNAS-SFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLF 149 (175)
T ss_dssp CCSTTCCEEEEEEETTCHH-HHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEE
T ss_pred HHhhccceEEEEeeccccc-ccchhhhcchhhhhhhhhcccccCcEEEEecccchhhhhcchhHHHHHHHHHHcCCCeEE
Confidence 3467899999999987653 3334444433222 13668999999999875421 111112223343 4667
Q ss_pred eccCcchhhHHHHH
Q 020346 141 FCSVESKLGLDSLL 154 (327)
Q Consensus 141 ~~s~~~~~~l~~l~ 154 (327)
.+|+....+++++-
T Consensus 150 e~SA~~g~gv~e~f 163 (175)
T d1ky3a_ 150 LTSAKNAINVDTAF 163 (175)
T ss_dssp EEBTTTTBSHHHHH
T ss_pred EEeCCCCcCHHHHH
Confidence 88988887777753
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.82 E-value=0.038 Score=43.73 Aligned_cols=83 Identities=14% Similarity=0.210 Sum_probs=53.2
Q ss_pred ccccccccEEEEEeecCCCCCChHHHHHHHH---HHHhcCCCEEEEeecCCCCcHHH--HHHHHhhhhhcCCceeeccCc
Q 020346 71 DPPVANVDHLLLLFSMDQPKLEPFALTRFLV---EAESTGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLFCSVE 145 (327)
Q Consensus 71 r~~~anvD~lliv~~~~~p~~~~~~l~r~L~---~a~~~~~~~~ivlnK~Dl~~~~~--~~~~~~~~~~~~~~~~~~s~~ 145 (327)
+....++|.+++|++...+. +...+..++. .......++++|.||.|+.++.. .++.......++++.+.+|+.
T Consensus 70 ~~~~~~~~~~i~v~d~~~~~-Sf~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~e~~~~a~~~~~~~~e~Sak 148 (167)
T d1z08a1 70 PIYYRDSNGAILVYDITDED-SFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAK 148 (167)
T ss_dssp CCSSTTCSEEEEEEETTCHH-HHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTT
T ss_pred hhhccCCceeEEEEeCCchh-HHHhhhhhhhhcccccccccceeeeccccccccccccchHHHHHHHHHcCCeEEEEecC
Confidence 34578999999999987653 3334444432 22345667788899999865421 112223334467788889998
Q ss_pred chhhHHHHH
Q 020346 146 SKLGLDSLL 154 (327)
Q Consensus 146 ~~~~l~~l~ 154 (327)
+..+++++-
T Consensus 149 ~~~~v~e~F 157 (167)
T d1z08a1 149 QNKGIEELF 157 (167)
T ss_dssp TTBSHHHHH
T ss_pred CCcCHHHHH
Confidence 888777763
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.81 E-value=0.033 Score=44.32 Aligned_cols=82 Identities=17% Similarity=0.154 Sum_probs=52.2
Q ss_pred cccccccEEEEEeecCCCCCChHHHHHHHHHHH---hcCCCEEEEeecCCCCcHHH--HHHHHhhhhhcCCceeeccCcc
Q 020346 72 PPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE---STGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLFCSVES 146 (327)
Q Consensus 72 ~~~anvD~lliv~~~~~p~~~~~~l~r~L~~a~---~~~~~~~ivlnK~Dl~~~~~--~~~~~~~~~~~~~~~~~~s~~~ 146 (327)
..+.++|.+++|++...+. +...+.+++.... ....|+++|.||.|+.+... ...........+++.+.+|+.+
T Consensus 73 ~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~~ilvgnK~D~~~~~~v~~~~~~~~~~~~~~~~~~~SAkt 151 (171)
T d2ew1a1 73 SYYRSANALILTYDITCEE-SFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKE 151 (171)
T ss_dssp GGSTTCSEEEEEEETTCHH-HHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTTT
T ss_pred HHHhccceEEEeeecccch-hhhhhhhhhhhhcccccccccEEEEEeecccccccchhhhHHHHHHHhCCCEEEEEccCC
Confidence 3468999999999987642 3333444433332 34567888999999865421 1112222334567788899988
Q ss_pred hhhHHHHH
Q 020346 147 KLGLDSLL 154 (327)
Q Consensus 147 ~~~l~~l~ 154 (327)
+.+++++-
T Consensus 152 g~gV~e~f 159 (171)
T d2ew1a1 152 SDNVEKLF 159 (171)
T ss_dssp CTTHHHHH
T ss_pred CCCHHHHH
Confidence 88888763
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=93.80 E-value=0.015 Score=47.67 Aligned_cols=25 Identities=32% Similarity=0.400 Sum_probs=21.4
Q ss_pred cCCCEEEEEcCCCCCHHHHHHHHcC
Q 020346 157 LRDQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 157 l~g~~v~lvG~sG~GKSTLln~L~g 181 (327)
+.|.-+.|.|+||+|||||.-.|..
T Consensus 13 ~~g~gvli~G~sg~GKS~la~~l~~ 37 (169)
T d1ko7a2 13 VYGVGVLITGDSGIGKSETALELIK 37 (169)
T ss_dssp ETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred ECCEEEEEEeCCCCCHHHHHHHHHH
Confidence 4688899999999999999866655
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=93.80 E-value=0.051 Score=42.25 Aligned_cols=79 Identities=19% Similarity=0.215 Sum_probs=52.4
Q ss_pred ccccccEEEEEeecCCCCCChHHHHHHHHHHHhcCCCEEEEeecCCCCcHHHHHHHHhhhhhcCCceeeccCcchhhHHH
Q 020346 73 PVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVESKLGLDS 152 (327)
Q Consensus 73 ~~anvD~lliv~~~~~p~~~~~~l~r~L~~a~~~~~~~~ivlnK~Dl~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~ 152 (327)
.+.++|.+++|+++..|.... ..... ......++++++||.|+.+..........+. ...+++.+|+.++.+++.
T Consensus 77 ~~~~ad~ii~v~d~~~~~~~~--~~~~~--~~~~~~~~i~~~~k~d~~~~~~~~~~~~~~~-~~~~~~~vSA~~g~gi~~ 151 (160)
T d1xzpa2 77 EIEKADIVLFVLDASSPLDEE--DRKIL--ERIKNKRYLVVINKVDVVEKINEEEIKNKLG-TDRHMVKISALKGEGLEK 151 (160)
T ss_dssp HHHHCSEEEEEEETTSCCCHH--HHHHH--HHHTTSSEEEEEEECSSCCCCCHHHHHHHHT-CSTTEEEEEGGGTCCHHH
T ss_pred HHHhCCEEEEEEeCCCCcchh--hhhhh--hhcccccceeeeeeccccchhhhHHHHHHhC-CCCcEEEEECCCCCCHHH
Confidence 467999999999998765332 11111 1235678999999999987543333333332 345788899988888887
Q ss_pred HHhh
Q 020346 153 LLQR 156 (327)
Q Consensus 153 l~~~ 156 (327)
|...
T Consensus 152 L~~~ 155 (160)
T d1xzpa2 152 LEES 155 (160)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7544
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.80 E-value=0.015 Score=51.73 Aligned_cols=21 Identities=29% Similarity=0.316 Sum_probs=18.5
Q ss_pred CEEEEEcCCCCCHHHHHHHHc
Q 020346 160 QTTVIVGPSGVGKSSLINALR 180 (327)
Q Consensus 160 ~~v~lvG~sG~GKSTLln~L~ 180 (327)
-++||-|++|||||||.+.|.
T Consensus 28 ~iIGi~G~qGSGKSTl~~~l~ 48 (286)
T d1odfa_ 28 LFIFFSGPQGSGKSFTSIQIY 48 (286)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred EEEEeECCCCCCHHHHHHHHH
Confidence 388999999999999988764
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=93.79 E-value=0.012 Score=49.99 Aligned_cols=21 Identities=29% Similarity=0.558 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHcC
Q 020346 161 TTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g 181 (327)
++.|.|.-|||||||||.|+.
T Consensus 5 v~iitGFLGaGKTTll~~lL~ 25 (222)
T d1nija1 5 VTLLTGFLGAGKTTLLRHILN 25 (222)
T ss_dssp EEEEEESSSSSCHHHHHHHHH
T ss_pred EEEEeeCCCCCHHHHHHHHHh
Confidence 578999999999999999986
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=93.74 E-value=0.017 Score=49.53 Aligned_cols=24 Identities=33% Similarity=0.495 Sum_probs=21.1
Q ss_pred cCCCEEEEEcCCCCCHHHHHHHHc
Q 020346 157 LRDQTTVIVGPSGVGKSSLINALR 180 (327)
Q Consensus 157 l~g~~v~lvG~sG~GKSTLln~L~ 180 (327)
++|..+.|.|++|+|||||+-.|+
T Consensus 27 ~pg~~~~i~G~~G~GKS~l~l~la 50 (274)
T d1nlfa_ 27 VAGTVGALVSPGGAGKSMLALQLA 50 (274)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHH
T ss_pred cCCcEEEEEeCCCCCHHHHHHHHH
Confidence 479999999999999999986654
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=93.65 E-value=0.071 Score=41.76 Aligned_cols=85 Identities=15% Similarity=0.102 Sum_probs=50.6
Q ss_pred cccccccccEEEEEeecCCCCCChHHHHHHHHH----HHhcCCCEEEEeecCCCCcHHHHHHHHh--h---hhhcCCcee
Q 020346 70 LDPPVANVDHLLLLFSMDQPKLEPFALTRFLVE----AESTGIPLTLALNKVELVDEEVLNTWKS--R---LHTWGYEPL 140 (327)
Q Consensus 70 ~r~~~anvD~lliv~~~~~p~~~~~~l~r~L~~----a~~~~~~~~ivlnK~Dl~~~~~~~~~~~--~---~~~~~~~~~ 140 (327)
.+....++|.++++++.... .+......++.. ....+.|+++|.||.|+.+......... . +..-.++.+
T Consensus 63 ~~~~~~~~~~~i~v~d~~d~-~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (165)
T d1ksha_ 63 WRNYFESTDGLIWVVDSADR-QRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQ 141 (165)
T ss_dssp GGGGCTTCSEEEEEEETTCG-GGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEE
T ss_pred HHhhhhhhhcceeeeecccc-hhHHHHHHhhhhhhhhcccCCCceEEEEeccccccccCHHHHHHHHHhhhhhcCCCEEE
Confidence 34567899999999987653 222233333322 2346789999999999964321111111 1 122234678
Q ss_pred eccCcchhhHHHHHh
Q 020346 141 FCSVESKLGLDSLLQ 155 (327)
Q Consensus 141 ~~s~~~~~~l~~l~~ 155 (327)
.+|+.++.+++++-.
T Consensus 142 ~~Sa~~g~gv~e~~~ 156 (165)
T d1ksha_ 142 GCSAVTGEDLLPGID 156 (165)
T ss_dssp ECCTTTCTTHHHHHH
T ss_pred EEECCCCCCHHHHHH
Confidence 889988887776543
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=93.63 E-value=0.12 Score=40.84 Aligned_cols=81 Identities=15% Similarity=0.178 Sum_probs=45.7
Q ss_pred ccccccEEEEEeecCCC----------CCChHHHH-HHHHHHHhcCCCEEEEeecCCCCcHHH-HHHH-Hhhhh----hc
Q 020346 73 PVANVDHLLLLFSMDQP----------KLEPFALT-RFLVEAESTGIPLTLALNKVELVDEEV-LNTW-KSRLH----TW 135 (327)
Q Consensus 73 ~~anvD~lliv~~~~~p----------~~~~~~l~-r~L~~a~~~~~~~~ivlnK~Dl~~~~~-~~~~-~~~~~----~~ 135 (327)
...++|.++++.+...+ .... .+ .++..+...++|+++|+||+|+.++.+ .... ...+. ..
T Consensus 78 ~~~~~d~~~~vvD~~~~~~~~~~~~~~~~~~--~d~~~~~~l~~~~~p~iiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~ 155 (184)
T d2cxxa1 78 NAKNIDVAVLVVDGKAAPEIIKRWEKRGEIP--IDVEFYQFLRELDIPTIVAVNKLDKIKNVQEVINFLAEKFEVPLSEI 155 (184)
T ss_dssp HGGGCCEEEEEEETTHHHHHHHHHHHTTCCC--HHHHHHHHHHHTTCCEEEEEECGGGCSCHHHHHHHHHHHHTCCGGGH
T ss_pred cccccchheeeeeccccchhhhhhhhccccH--HHHHHHHHHHHcCCCEEEEEeeeehhhhHHHHHHHHHHHhccccccc
Confidence 45789999998876421 1111 11 123334557899999999999875432 2221 12221 11
Q ss_pred CCceeeccCcchhhHHHHHh
Q 020346 136 GYEPLFCSVESKLGLDSLLQ 155 (327)
Q Consensus 136 ~~~~~~~s~~~~~~l~~l~~ 155 (327)
....+++|+.++.+++.+..
T Consensus 156 ~~~~~~vSA~~g~gi~~L~~ 175 (184)
T d2cxxa1 156 DKVFIPISAKFGDNIERLKN 175 (184)
T ss_dssp HHHEEECCTTTCTTHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 12356677777777766544
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=93.61 E-value=0.01 Score=53.08 Aligned_cols=24 Identities=29% Similarity=0.459 Sum_probs=21.0
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcC
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g 181 (327)
.+.-+.|+|++|+|||||++.|.+
T Consensus 27 ~~h~vLl~G~pG~GKT~lar~~~~ 50 (333)
T d1g8pa_ 27 GIGGVLVFGDRGTGKSTAVRALAA 50 (333)
T ss_dssp GGCCEEEECCGGGCTTHHHHHHHH
T ss_pred CCCeEEEECCCCccHHHHHHHHHH
Confidence 345689999999999999999876
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=93.53 E-value=0.017 Score=53.51 Aligned_cols=24 Identities=29% Similarity=0.461 Sum_probs=22.0
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcC
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g 181 (327)
+.-.+.|.||+||||||++.+++.
T Consensus 157 ~~GliLvtGpTGSGKSTTl~~~l~ 180 (401)
T d1p9ra_ 157 PHGIILVTGPTGSGKSTTLYAGLQ 180 (401)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHH
T ss_pred hhceEEEEcCCCCCccHHHHHHhh
Confidence 567899999999999999999887
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.52 E-value=0.038 Score=43.74 Aligned_cols=83 Identities=13% Similarity=0.125 Sum_probs=52.7
Q ss_pred cccccccEEEEEeecCCCCCChHHHHHHHHHH---HhcCCCEEEEeecCCCCcHHH--HHHHHhhhhhcCCceeeccCcc
Q 020346 72 PPVANVDHLLLLFSMDQPKLEPFALTRFLVEA---ESTGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLFCSVES 146 (327)
Q Consensus 72 ~~~anvD~lliv~~~~~p~~~~~~l~r~L~~a---~~~~~~~~ivlnK~Dl~~~~~--~~~~~~~~~~~~~~~~~~s~~~ 146 (327)
....++|.+++++++..|. +...+..++... .....|+++|.||.|+.+... ..........++.+.+.+|+..
T Consensus 72 ~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~ 150 (167)
T d1z0ja1 72 MYYRGSAAAIIVYDITKEE-TFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKN 150 (167)
T ss_dssp HHHTTCSEEEEEEETTCHH-HHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTT
T ss_pred HHHhhccceEEEeeechhh-hhhhHHHhhhhhhhccCCcceEEEecccchhccccchhHHHHHHHHHHcCCEEEEEecCC
Confidence 3467899999999987643 233444443222 235668889999999965421 1112223344667778899988
Q ss_pred hhhHHHHHh
Q 020346 147 KLGLDSLLQ 155 (327)
Q Consensus 147 ~~~l~~l~~ 155 (327)
..+++++-.
T Consensus 151 ~~nV~e~f~ 159 (167)
T d1z0ja1 151 AININELFI 159 (167)
T ss_dssp TBSHHHHHH
T ss_pred CCCHHHHHH
Confidence 887777644
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=93.50 E-value=0.019 Score=52.56 Aligned_cols=24 Identities=29% Similarity=0.446 Sum_probs=22.2
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcC
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g 181 (327)
+...+.|.||||+||||+.++|++
T Consensus 153 ~~~~~~~~g~~~~gk~~~~~~~~~ 176 (362)
T d1svma_ 153 KKRYWLFKGPIDSGKTTLAAALLE 176 (362)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CcCeEEEECCCCCCHHHHHHHHHH
Confidence 567899999999999999999987
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.47 E-value=0.031 Score=44.56 Aligned_cols=80 Identities=19% Similarity=0.235 Sum_probs=49.5
Q ss_pred ccccccEEEEEeecCCCCCChHHHHHHHHH----HHhcCCCEEEEeecCCCCcHHH--HHHHHhhhhhcCCceeeccCcc
Q 020346 73 PVANVDHLLLLFSMDQPKLEPFALTRFLVE----AESTGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLFCSVES 146 (327)
Q Consensus 73 ~~anvD~lliv~~~~~p~~~~~~l~r~L~~----a~~~~~~~~ivlnK~Dl~~~~~--~~~~~~~~~~~~~~~~~~s~~~ 146 (327)
...++|.+++|+++..+. +...+..++.. ....+.|+++|.||+|+..... .+........++++.+.+|+..
T Consensus 72 ~~~~~~~~llv~d~~d~~-Sf~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~v~~e~~~~~~~~~~~~~~e~Sak~ 150 (169)
T d1x1ra1 72 YMRTGDGFLIVYSVTDKA-SFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKD 150 (169)
T ss_dssp HHHHCSEEEEEEETTCHH-HHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSS
T ss_pred hhhhccEEEEecccccch-hhhccchhhHHHHhhccccCccEEEEecccchhhhceeehhhHHHHHHHcCCEEEEEcCCC
Confidence 467999999999997642 23334443322 2234678999999999865421 1222233345567778888864
Q ss_pred h-hhHHHH
Q 020346 147 K-LGLDSL 153 (327)
Q Consensus 147 ~-~~l~~l 153 (327)
. .+++++
T Consensus 151 ~~~nV~~~ 158 (169)
T d1x1ra1 151 PPLNVDKT 158 (169)
T ss_dssp SCBSHHHH
T ss_pred CCcCHHHH
Confidence 4 356654
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.45 E-value=0.031 Score=44.47 Aligned_cols=82 Identities=10% Similarity=0.160 Sum_probs=51.5
Q ss_pred ccccccEEEEEeecCCCCCChHHHHHHHH---HHHhcCCCEEEEeecCCCCcHHH--HHHHHhhhhhcCCceeeccCcch
Q 020346 73 PVANVDHLLLLFSMDQPKLEPFALTRFLV---EAESTGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLFCSVESK 147 (327)
Q Consensus 73 ~~anvD~lliv~~~~~p~~~~~~l~r~L~---~a~~~~~~~~ivlnK~Dl~~~~~--~~~~~~~~~~~~~~~~~~s~~~~ 147 (327)
-..++|.++++++...+. +...+..+.. .....+.|+++|.||+|+.+... .+........++++.+.+|+.+.
T Consensus 75 ~~~~~~~~ilv~d~~~~~-s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~e~~~~~~~~~~~~~~e~SAk~g 153 (170)
T d1r2qa_ 75 YYRGAQAAIVVYDITNEE-SFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTS 153 (170)
T ss_dssp HHTTCSEEEEEEETTCHH-HHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTC
T ss_pred HhhCcceEEEEeccchhh-HHHHHHHHhhhhhhccCCCceEEeecccccccccccccHHHHHHHHHhcCCEEEEeeCCCC
Confidence 468999999999987542 2223333332 22334668899999999865421 11122233446778889999887
Q ss_pred hhHHHHHh
Q 020346 148 LGLDSLLQ 155 (327)
Q Consensus 148 ~~l~~l~~ 155 (327)
.+++.+-.
T Consensus 154 ~~V~e~f~ 161 (170)
T d1r2qa_ 154 MNVNEIFM 161 (170)
T ss_dssp TTHHHHHH
T ss_pred CCHHHHHH
Confidence 77776644
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=93.43 E-value=0.018 Score=48.64 Aligned_cols=22 Identities=18% Similarity=0.264 Sum_probs=19.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHcC
Q 020346 160 QTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 160 ~~v~lvG~sG~GKSTLln~L~g 181 (327)
+++||.|..||||||+.+.|..
T Consensus 2 ~iIgiTG~igSGKsTva~~l~e 23 (241)
T d1deka_ 2 KLIFLSGVKRSGKDTTADFIMS 23 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999964
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.36 E-value=0.038 Score=43.69 Aligned_cols=83 Identities=14% Similarity=0.128 Sum_probs=53.5
Q ss_pred cccccccEEEEEeecCCCCCChHHHHHHHHHH---HhcCCCEEEEeecCCCCcHHH--HHHHHhhhhhcCCceeeccCcc
Q 020346 72 PPVANVDHLLLLFSMDQPKLEPFALTRFLVEA---ESTGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLFCSVES 146 (327)
Q Consensus 72 ~~~anvD~lliv~~~~~p~~~~~~l~r~L~~a---~~~~~~~~ivlnK~Dl~~~~~--~~~~~~~~~~~~~~~~~~s~~~ 146 (327)
....++|.+++++++.++. +...+..++... .....|++++.||.|+.+... .+......+..+++.+.+|+.+
T Consensus 72 ~~~~~~d~~ilv~d~~~~~-s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sakt 150 (166)
T d1z0fa1 72 SYYRGAAGALMVYDITRRS-TYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKT 150 (166)
T ss_dssp HHHHTCSEEEEEEETTCHH-HHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTT
T ss_pred HHhcCCcEEEEEeccCchH-HHHHHHHHHHHHHhhccccceEEEEcccccchhhcccHHHHHHHHHHHcCCEEEEEeCCC
Confidence 3467999999999997642 333444443333 334567888889999854421 1122233445677888999998
Q ss_pred hhhHHHHHh
Q 020346 147 KLGLDSLLQ 155 (327)
Q Consensus 147 ~~~l~~l~~ 155 (327)
+.+++++-.
T Consensus 151 g~~v~e~f~ 159 (166)
T d1z0fa1 151 GENVEDAFL 159 (166)
T ss_dssp CTTHHHHHH
T ss_pred CCCHHHHHH
Confidence 888877643
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.24 E-value=0.085 Score=42.00 Aligned_cols=84 Identities=20% Similarity=0.336 Sum_probs=50.1
Q ss_pred cccccccccEEEEEeecCCCCCChHHHHH-HHH--HHHhcCCCEEEEeecCCCCcHHHHHHH--------------Hhhh
Q 020346 70 LDPPVANVDHLLLLFSMDQPKLEPFALTR-FLV--EAESTGIPLTLALNKVELVDEEVLNTW--------------KSRL 132 (327)
Q Consensus 70 ~r~~~anvD~lliv~~~~~p~~~~~~l~r-~L~--~a~~~~~~~~ivlnK~Dl~~~~~~~~~--------------~~~~ 132 (327)
.+....++|.+++|+++..|. +...+.. ++. .....+.|+++|.||+|+.+....... ....
T Consensus 67 ~~~~~~~~~~~ilv~d~~~~~-Sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~e~~~~a 145 (177)
T d1kmqa_ 67 RPLSYPDTDVILMCFSIDSPD-SLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMA 145 (177)
T ss_dssp GGGGCTTCSEEEEEEETTCHH-HHHHHHHTHHHHHHHHSTTSCEEEEEECGGGTTCHHHHHHHHHTTCCCCCHHHHHHHH
T ss_pred chhhcccchhhhhhcccchhH-HHHHHHHHHHHHHHHhCCCCceEEeeecccccchhhHHHHHHHhhcccccHHHHHHHH
Confidence 334568999999999987653 2222222 221 222346799999999999754322111 1111
Q ss_pred hhcC-CceeeccCcchhhHHHHH
Q 020346 133 HTWG-YEPLFCSVESKLGLDSLL 154 (327)
Q Consensus 133 ~~~~-~~~~~~s~~~~~~l~~l~ 154 (327)
..++ .+.+.+|+.++.+++++-
T Consensus 146 ~~~~~~~~~E~SAkt~~gi~e~F 168 (177)
T d1kmqa_ 146 NRIGAFGYMECSAKTKDGVREVF 168 (177)
T ss_dssp HHTTCSEEEECCTTTCTTHHHHH
T ss_pred HHcCCcEEEEecCCCCcCHHHHH
Confidence 2334 356778888888887763
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=93.24 E-value=0.17 Score=39.59 Aligned_cols=82 Identities=17% Similarity=0.207 Sum_probs=52.4
Q ss_pred cccccEEEEEeecCCCCCChHHHHHHHHHHHhcCCCEEEEeecCCCCcHHHHHHH----HhhhhhcC--CceeeccCcch
Q 020346 74 VANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTW----KSRLHTWG--YEPLFCSVESK 147 (327)
Q Consensus 74 ~anvD~lliv~~~~~p~~~~~~l~r~L~~a~~~~~~~~ivlnK~Dl~~~~~~~~~----~~~~~~~~--~~~~~~s~~~~ 147 (327)
+..++.++.+.....+. ......++........+.++++||+|+.+....... ...+..++ .+++.+|+.++
T Consensus 96 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~v~~k~D~~~~~~~~~~~~~~~~~l~~~~~~~~~i~vSA~~g 173 (188)
T d1puia_ 96 RQSLQGLVVLMDIRHPL--KDLDQQMIEWAVDSNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKK 173 (188)
T ss_dssp CTTEEEEEEEEETTSCC--CHHHHHHHHHHHHTTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTT
T ss_pred hhheeEEEEeecccccc--hhHHHHHHHHhhhccccccchhhhhhccCHHHHHHHHHHHHHHHHhhCCCCcEEEEeCCCC
Confidence 45556666665555432 223345555556778899999999999887544322 22333332 46788999999
Q ss_pred hhHHHHHhhc
Q 020346 148 LGLDSLLQRL 157 (327)
Q Consensus 148 ~~l~~l~~~l 157 (327)
.+++.|...+
T Consensus 174 ~Gid~L~~~i 183 (188)
T d1puia_ 174 QGVDKLRQKL 183 (188)
T ss_dssp BSHHHHHHHH
T ss_pred CCHHHHHHHH
Confidence 9998876543
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.21 E-value=0.02 Score=48.22 Aligned_cols=22 Identities=32% Similarity=0.471 Sum_probs=20.5
Q ss_pred CEEEEEcCCCCCHHHHHHHHcC
Q 020346 160 QTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 160 ~~v~lvG~sG~GKSTLln~L~g 181 (327)
+.++|=|.-||||||+++.|..
T Consensus 3 k~IviEG~~GsGKST~~~~L~~ 24 (241)
T d2ocpa1 3 RRLSIEGNIAVGKSTFVKLLTK 24 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHH
Confidence 6789999999999999999986
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.05 E-value=0.06 Score=42.84 Aligned_cols=82 Identities=16% Similarity=0.144 Sum_probs=52.0
Q ss_pred ccccccEEEEEeecCCCCCChHHHHHHHHHHH---hcCCCEEEEeecCCCCcHHH--HHHHHhhhhhcCCceeeccCcch
Q 020346 73 PVANVDHLLLLFSMDQPKLEPFALTRFLVEAE---STGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLFCSVESK 147 (327)
Q Consensus 73 ~~anvD~lliv~~~~~p~~~~~~l~r~L~~a~---~~~~~~~ivlnK~Dl~~~~~--~~~~~~~~~~~~~~~~~~s~~~~ 147 (327)
...++|.++++++...|. +...+.+++..+. ..+.|+++|.||+|+..... ...........+++.+.+|+.++
T Consensus 72 ~~~~~d~~ilv~d~~~~~-sf~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~a~~~~~~~~e~Sa~tg 150 (173)
T d2a5ja1 72 YYRGAAGALLVYDITRRE-TFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTA 150 (173)
T ss_dssp HHTTCSEEEEEEETTCHH-HHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTC
T ss_pred HhhccCEEEEEEeecChH-HHHhHHHHHHHHHHhCCCCCeEEEEecCCchhhhhhhHHHHHHHHHHHcCCEEEEecCCCC
Confidence 467899999999998753 3334445443333 24668889999999754321 11111222345677888999888
Q ss_pred hhHHHHHh
Q 020346 148 LGLDSLLQ 155 (327)
Q Consensus 148 ~~l~~l~~ 155 (327)
.+++++-.
T Consensus 151 ~~V~e~f~ 158 (173)
T d2a5ja1 151 CNVEEAFI 158 (173)
T ss_dssp TTHHHHHH
T ss_pred CCHHHHHH
Confidence 87776533
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.03 E-value=0.073 Score=42.69 Aligned_cols=86 Identities=15% Similarity=0.163 Sum_probs=50.9
Q ss_pred ccccccccccEEEEEeecCCCCCChHHHHHHHHHHH-------hcCCCEEEEeecCCCCcHHHHH-HHHhhh-hhcCCce
Q 020346 69 ILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE-------STGIPLTLALNKVELVDEEVLN-TWKSRL-HTWGYEP 139 (327)
Q Consensus 69 l~r~~~anvD~lliv~~~~~p~~~~~~l~r~L~~a~-------~~~~~~~ivlnK~Dl~~~~~~~-~~~~~~-~~~~~~~ 139 (327)
..+....++|.++++++...+. +...+.+++.... ....|+++|.||+||.+..... ...... ...+++.
T Consensus 67 ~~~~~~~~~~~~i~~~d~~~~~-~~~~~~~~~~~i~~~~~~~~~~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 145 (184)
T d1vg8a_ 67 LGVAFYRGADCCVLVFDVTAPN-TFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPY 145 (184)
T ss_dssp SCCGGGTTCSEEEEEEETTCHH-HHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHHHTTSCCE
T ss_pred cccccccCccEEEEeecccchh-hhhcchhhHHHHHHHhccccccCCCEEEEEEeecccccchhHHHHHHHHHHhcCCeE
Confidence 3344578999999999986532 2222333332221 2356899999999986543211 111122 2245677
Q ss_pred eeccCcchhhHHHHHh
Q 020346 140 LFCSVESKLGLDSLLQ 155 (327)
Q Consensus 140 ~~~s~~~~~~l~~l~~ 155 (327)
+.+|+.+..+++.+-.
T Consensus 146 ~e~Sak~~~gI~e~f~ 161 (184)
T d1vg8a_ 146 FETSAKEAINVEQAFQ 161 (184)
T ss_dssp EECBTTTTBSHHHHHH
T ss_pred EEEcCCCCcCHHHHHH
Confidence 8888887777766543
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.97 E-value=0.069 Score=43.42 Aligned_cols=85 Identities=12% Similarity=0.108 Sum_probs=53.2
Q ss_pred ccccccccccEEEEEeecCCCCCChHHHHHH---HHHHHhcCCCEEEEeecCCCCcHHH--HHHHHhhhhhcCCceeecc
Q 020346 69 ILDPPVANVDHLLLLFSMDQPKLEPFALTRF---LVEAESTGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLFCS 143 (327)
Q Consensus 69 l~r~~~anvD~lliv~~~~~p~~~~~~l~r~---L~~a~~~~~~~~ivlnK~Dl~~~~~--~~~~~~~~~~~~~~~~~~s 143 (327)
+......++|.+++|++...+. +...+..+ +........|+++|.||.|+.+... .+.........+...+.+|
T Consensus 71 ~~~~~~~~a~~~i~v~d~t~~~-s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~S 149 (194)
T d2bcgy1 71 ITSSYYRGSHGIIIVYDVTDQE-SFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETS 149 (194)
T ss_dssp CCGGGGTTCSEEEEEEETTCHH-HHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECC
T ss_pred HHHHHhccCCEEEEEEeCcchh-hhhhHhhhhhhhhhcccCCceEEEEEeccccccccchhHHHHhhhhhccCcceEEEe
Confidence 3344568999999999987642 22233332 3333345668999999999976321 1122223344567778889
Q ss_pred CcchhhHHHHH
Q 020346 144 VESKLGLDSLL 154 (327)
Q Consensus 144 ~~~~~~l~~l~ 154 (327)
+.++.+++.+-
T Consensus 150 Ak~g~gi~e~f 160 (194)
T d2bcgy1 150 ALDSTNVEDAF 160 (194)
T ss_dssp TTTCTTHHHHH
T ss_pred cCcCccHHHHH
Confidence 88877777653
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=92.94 E-value=0.046 Score=47.63 Aligned_cols=24 Identities=25% Similarity=0.278 Sum_probs=20.8
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcC
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g 181 (327)
...+++|+|+.|+|||||.+.+..
T Consensus 43 ~~~~v~I~GmgGiGKTtLA~~v~~ 66 (277)
T d2a5yb3 43 DSFFLFLHGRAGSGKSVIASQALS 66 (277)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999998864
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.84 E-value=0.089 Score=42.37 Aligned_cols=81 Identities=17% Similarity=0.258 Sum_probs=48.5
Q ss_pred cccccccEEEEEeecCCCCCChHHH-HHHH--HHHHhcCCCEEEEeecCCCCcHHHHHH--------------HHhhhhh
Q 020346 72 PPVANVDHLLLLFSMDQPKLEPFAL-TRFL--VEAESTGIPLTLALNKVELVDEEVLNT--------------WKSRLHT 134 (327)
Q Consensus 72 ~~~anvD~lliv~~~~~p~~~~~~l-~r~L--~~a~~~~~~~~ivlnK~Dl~~~~~~~~--------------~~~~~~~ 134 (327)
....++|.+++|+++..|. +...+ ..++ ......+.|+++|.||+||.++..... ......+
T Consensus 76 ~~~~~a~~~ilv~d~t~~~-Sf~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~r~v~~~~~~~~a~~ 154 (185)
T d2atxa1 76 LSYPMTDVFLICFSVVNPA-SFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKE 154 (185)
T ss_dssp GGCTTCSEEEEEEETTCHH-HHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHH
T ss_pred hcccccceeeeccccchHH-HHHHHHHHHHHHHHhcCCCCCeeEeeeccccccchhhhhhhhhcccccccHHHHHHHHHH
Confidence 3467899999999997653 22222 2222 223345778999999999976432211 1111122
Q ss_pred cC-CceeeccCcchhhHHHH
Q 020346 135 WG-YEPLFCSVESKLGLDSL 153 (327)
Q Consensus 135 ~~-~~~~~~s~~~~~~l~~l 153 (327)
++ ...+.+|+.++.+++++
T Consensus 155 ~~~~~~~E~SAk~~~gv~e~ 174 (185)
T d2atxa1 155 IGACCYVECSALTQKGLKTV 174 (185)
T ss_dssp HTCSCEEECCTTTCTTHHHH
T ss_pred cCCCEEEEecCCCCcCHHHH
Confidence 33 35566788877777765
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=92.72 E-value=0.12 Score=40.98 Aligned_cols=82 Identities=13% Similarity=0.011 Sum_probs=51.2
Q ss_pred cccccccEEEEEeecCCCCCChHHHHHHHHHHH----hcCCCEEEEeecCCCCcHH---HHHHH--HhhhhhcCCceeec
Q 020346 72 PPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE----STGIPLTLALNKVELVDEE---VLNTW--KSRLHTWGYEPLFC 142 (327)
Q Consensus 72 ~~~anvD~lliv~~~~~p~~~~~~l~r~L~~a~----~~~~~~~ivlnK~Dl~~~~---~~~~~--~~~~~~~~~~~~~~ 142 (327)
....++|.+++|++...+ .+...+..++.... ....|+++|.||.|+.+.. +.... ...+...++..+.+
T Consensus 75 ~~~~~~~~ii~v~D~s~~-~~~~~~~~~l~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~e~ 153 (173)
T d1e0sa_ 75 HYYTGTQGLIFVVDCADR-DRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPS 153 (173)
T ss_dssp GGTTTCCEEEEEEETTCG-GGHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEEC
T ss_pred hhhcccceEEEEEecccc-hhHHHHHHHHHHHhhhcccccceeeeeeecccccccccHHHHHHHHHHHHHHhCCCEEEEe
Confidence 456799999999998753 23334444443332 3467899999999996532 22211 11222334556788
Q ss_pred cCcchhhHHHHH
Q 020346 143 SVESKLGLDSLL 154 (327)
Q Consensus 143 s~~~~~~l~~l~ 154 (327)
|+.+..+++++-
T Consensus 154 SA~tg~gv~e~~ 165 (173)
T d1e0sa_ 154 CATSGDGLYEGL 165 (173)
T ss_dssp BTTTTBTHHHHH
T ss_pred eCCCCcCHHHHH
Confidence 998888776654
|
| >d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain species: Pseudomonas syringae pv. tomato [TaxId: 323]
Probab=92.70 E-value=0.22 Score=41.84 Aligned_cols=47 Identities=21% Similarity=0.288 Sum_probs=35.8
Q ss_pred ccccccEEEEEeecCCCCCChHHHHHHHHHHHhcCCC-EEEEeecCCCCc
Q 020346 73 PVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIP-LTLALNKVELVD 121 (327)
Q Consensus 73 ~~anvD~lliv~~~~~p~~~~~~l~r~L~~a~~~~~~-~~ivlnK~Dl~~ 121 (327)
.++-+|.+++|.++... ..+ +-...+..+...+++ +++++||+|+.+
T Consensus 109 g~~~aD~ailVvda~~G-~~~-Qt~e~~~~~~~~gv~~iiv~vNK~D~~~ 156 (222)
T d1zunb3 109 GASTCDLAIILVDARYG-VQT-QTRRHSYIASLLGIKHIVVAINKMDLNG 156 (222)
T ss_dssp HHTTCSEEEEEEETTTC-SCH-HHHHHHHHHHHTTCCEEEEEEECTTTTT
T ss_pred ccccCceEEEEeccccC-ccc-chHHHHHHHHHcCCCEEEEEEEcccccc
Confidence 47889999999999764 344 344556677777865 788999999986
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=92.68 E-value=0.031 Score=47.90 Aligned_cols=23 Identities=26% Similarity=0.442 Sum_probs=19.8
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHc
Q 020346 158 RDQTTVIVGPSGVGKSSLINALR 180 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~ 180 (327)
......|.|||.+||||+|+.+.
T Consensus 40 ~~~~~iiTGpN~~GKSt~lk~i~ 62 (234)
T d1wb9a2 40 QRRMLIITGPNMGGKSTYMRQTA 62 (234)
T ss_dssp SSCEEEEECCTTSSHHHHHHHHH
T ss_pred CceEEEEeccCchhhHHHHHHHH
Confidence 34678999999999999999864
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.63 E-value=0.11 Score=40.85 Aligned_cols=81 Identities=20% Similarity=0.221 Sum_probs=51.7
Q ss_pred ccccccEEEEEeecCCCCCChHHHHHHHHHHH----hcCCCEEEEeecCCCCcHHH--HHHHHhhhhh-cCCceeeccCc
Q 020346 73 PVANVDHLLLLFSMDQPKLEPFALTRFLVEAE----STGIPLTLALNKVELVDEEV--LNTWKSRLHT-WGYEPLFCSVE 145 (327)
Q Consensus 73 ~~anvD~lliv~~~~~p~~~~~~l~r~L~~a~----~~~~~~~ivlnK~Dl~~~~~--~~~~~~~~~~-~~~~~~~~s~~ 145 (327)
...++|.+++++++..| -+...+..++.... ....|+++|.||.|+..... .+........ .++..+.+|+.
T Consensus 71 ~~~~~~~~ilv~d~~~~-~sf~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak 149 (167)
T d1c1ya_ 71 YMKNGQGFALVYSITAQ-STFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAK 149 (167)
T ss_dssp HHHHCSEEEEEEETTCH-HHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTT
T ss_pred cccccceeEEeeeccch-hhhHhHHHHHHHHHHhcCCCCCeEEEEEEecCcccccccchhHHHHHHHHhCCCEEEEEcCC
Confidence 46789999999999865 23445555554332 24568999999999975421 1111122222 35677888998
Q ss_pred chhhHHHHH
Q 020346 146 SKLGLDSLL 154 (327)
Q Consensus 146 ~~~~l~~l~ 154 (327)
++.+++++-
T Consensus 150 ~g~gv~e~F 158 (167)
T d1c1ya_ 150 SKINVNEIF 158 (167)
T ss_dssp TTBSHHHHH
T ss_pred CCcCHHHHH
Confidence 888777653
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=92.44 E-value=0.15 Score=39.82 Aligned_cols=81 Identities=16% Similarity=0.076 Sum_probs=49.3
Q ss_pred ccccccEEEEEeecCCCCCChHHHHHHHHHH----HhcCCCEEEEeecCCCCcHHHHHHHHh-----hhhhcCCceeecc
Q 020346 73 PVANVDHLLLLFSMDQPKLEPFALTRFLVEA----ESTGIPLTLALNKVELVDEEVLNTWKS-----RLHTWGYEPLFCS 143 (327)
Q Consensus 73 ~~anvD~lliv~~~~~p~~~~~~l~r~L~~a----~~~~~~~~ivlnK~Dl~~~~~~~~~~~-----~~~~~~~~~~~~s 143 (327)
...++|.+++++++..+. +......++... ...+.|+++|.||.|+.+......... .+....+..+.+|
T Consensus 67 ~~~~~~~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~pi~lv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~e~S 145 (164)
T d1zd9a1 67 YCRGVSAIVYMVDAADQE-KIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSIS 145 (164)
T ss_dssp HHTTCSEEEEEEETTCGG-GHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECC
T ss_pred cccccchhhccccccccc-ccchhhhhhhhhhhhhcccCCcEEEEEeccccchhhhHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 468999999999987542 233333333222 235789999999999864321111111 1223345678888
Q ss_pred CcchhhHHHHH
Q 020346 144 VESKLGLDSLL 154 (327)
Q Consensus 144 ~~~~~~l~~l~ 154 (327)
+.+..+++.+-
T Consensus 146 a~~g~gv~e~~ 156 (164)
T d1zd9a1 146 CKEKDNIDITL 156 (164)
T ss_dssp TTTCTTHHHHH
T ss_pred CcCCcCHHHHH
Confidence 88877776643
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=92.36 E-value=0.056 Score=45.70 Aligned_cols=35 Identities=29% Similarity=0.402 Sum_probs=24.6
Q ss_pred hhhHHHHHhhc-C---CCEEEEEcCCCCCHHHHHHHHcC
Q 020346 147 KLGLDSLLQRL-R---DQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 147 ~~~l~~l~~~l-~---g~~v~lvG~sG~GKSTLln~L~g 181 (327)
..+++.+...+ . ...+.|.||+|+||||+.++++.
T Consensus 18 ~~~~~~L~~~i~~~~~~~~~Ll~Gp~G~GKtt~a~~~~~ 56 (239)
T d1njfa_ 18 EHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 56 (239)
T ss_dssp HHHHHHHHHHHHTTCCCSEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHH
Confidence 44455554444 2 23478899999999999999764
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.36 E-value=0.16 Score=40.99 Aligned_cols=85 Identities=15% Similarity=0.187 Sum_probs=50.0
Q ss_pred cccccccccccEEEEEeecCCCCCChHHHHHH-HH--HHHhcCCCEEEEeecCCCCcHHHHHHH--------------Hh
Q 020346 68 EILDPPVANVDHLLLLFSMDQPKLEPFALTRF-LV--EAESTGIPLTLALNKVELVDEEVLNTW--------------KS 130 (327)
Q Consensus 68 ~l~r~~~anvD~lliv~~~~~p~~~~~~l~r~-L~--~a~~~~~~~~ivlnK~Dl~~~~~~~~~--------------~~ 130 (327)
.+.+....++|.+++|+++..+. +...+..+ +. .....+.|+++|.||.||.+....... ..
T Consensus 66 ~~~~~~~~~~~~~ilv~d~~~~~-Sf~~~~~~~~~~~~~~~~~~~i~lvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~ 144 (191)
T d2ngra_ 66 RLRPLSYPQTDVFLVCFSVVSPS-SFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEK 144 (191)
T ss_dssp TTGGGGCTTCSEEEEEEETTCHH-HHHHHHHTHHHHHHHHCTTCCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHH
T ss_pred hhhhhcccccceeecccccchHH-HHHHHHHHHHHHHhhcCCCCceEEEeccccccccchhhhhhhhcccccccHHHHHH
Confidence 33344567999999999998753 33344332 22 222346789999999999654321110 01
Q ss_pred hhhhc-CCceeeccCcchhhHHHH
Q 020346 131 RLHTW-GYEPLFCSVESKLGLDSL 153 (327)
Q Consensus 131 ~~~~~-~~~~~~~s~~~~~~l~~l 153 (327)
...++ +...+.+|+.+..+++++
T Consensus 145 ~~~~~~~~~~~e~SAk~~~~V~e~ 168 (191)
T d2ngra_ 145 LARDLKAVKYVECSALTQKGLKNV 168 (191)
T ss_dssp HHHHTTCSCEEECCTTTCTTHHHH
T ss_pred HHHHcCCCeEEEEeCCCCcCHHHH
Confidence 11222 345667788777666665
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.13 E-value=0.066 Score=42.58 Aligned_cols=82 Identities=11% Similarity=0.171 Sum_probs=49.4
Q ss_pred cccccccEEEEEeecCCCCCChHHHHHH---HHHHHhcCCCEEEEeecCCCCcHHH--HHHHHhhhhhcCCceeeccCcc
Q 020346 72 PPVANVDHLLLLFSMDQPKLEPFALTRF---LVEAESTGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLFCSVES 146 (327)
Q Consensus 72 ~~~anvD~lliv~~~~~p~~~~~~l~r~---L~~a~~~~~~~~ivlnK~Dl~~~~~--~~~~~~~~~~~~~~~~~~s~~~ 146 (327)
..+..+|.+++|+++..|. +...+..+ +........++++|.||.|+..... ...........+++.+.+|+.+
T Consensus 74 ~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~iilv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~ 152 (173)
T d2fu5c1 74 AYYRGAMGIMLVYDITNEK-SFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKA 152 (173)
T ss_dssp TTTTTCSEEEEEEETTCHH-HHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC--
T ss_pred HhccCCCEEEEEEECCChh-hHHHHHHHHHHhhhhccCCceEEEEEecccchhhcccHHHHHHHHHHhcCCEEEEEeCCC
Confidence 3468899999999987653 33344444 3333355678999999999875321 1122233445678888899988
Q ss_pred hhhHHHHH
Q 020346 147 KLGLDSLL 154 (327)
Q Consensus 147 ~~~l~~l~ 154 (327)
..+++++-
T Consensus 153 g~gv~e~f 160 (173)
T d2fu5c1 153 NINVENAF 160 (173)
T ss_dssp -CCHHHHH
T ss_pred CCCHHHHH
Confidence 77776654
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=92.07 E-value=0.039 Score=47.01 Aligned_cols=23 Identities=26% Similarity=0.496 Sum_probs=19.9
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHc
Q 020346 158 RDQTTVIVGPSGVGKSSLINALR 180 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~ 180 (327)
.++.+.|.|||.+||||+|+.+.
T Consensus 34 ~~~~~iiTGpN~~GKSt~lk~i~ 56 (224)
T d1ewqa2 34 AHELVLITGPNMAGKSTFLRQTA 56 (224)
T ss_dssp SSCEEEEESCSSSSHHHHHHHHH
T ss_pred CCcEEEEECCCccccchhhhhhH
Confidence 35678999999999999999764
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.05 E-value=0.071 Score=42.77 Aligned_cols=82 Identities=12% Similarity=0.202 Sum_probs=51.0
Q ss_pred ccccccEEEEEeecCCCCCChHHHHHHHHHHH----hcCCCEEEEeecCCCCcHHHH--HHHHhhhhhcCCceeeccCcc
Q 020346 73 PVANVDHLLLLFSMDQPKLEPFALTRFLVEAE----STGIPLTLALNKVELVDEEVL--NTWKSRLHTWGYEPLFCSVES 146 (327)
Q Consensus 73 ~~anvD~lliv~~~~~p~~~~~~l~r~L~~a~----~~~~~~~ivlnK~Dl~~~~~~--~~~~~~~~~~~~~~~~~s~~~ 146 (327)
...++|.+++|+++..+ .+...+..++.... ....|+++|.||.|+.+..+. +........++++.+.+|+.+
T Consensus 84 ~~~~~~~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~v~~~e~~~~~~~~~~~~~e~Sak~ 162 (186)
T d2f7sa1 84 FFRDAMGFLLMFDLTSQ-QSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAAT 162 (186)
T ss_dssp HHTTCCEEEEEEETTCH-HHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEEEBTTT
T ss_pred HHhcCCEEEEEEecccc-ccceeeeeccchhhhhccCCCceEEEEeeeccchhhhcchHHHHHHHHHHcCCEEEEEeCCC
Confidence 45799999999998754 23334555443221 233467889999999654211 111223344677888999988
Q ss_pred hhhHHHHHh
Q 020346 147 KLGLDSLLQ 155 (327)
Q Consensus 147 ~~~l~~l~~ 155 (327)
..+++.+-.
T Consensus 163 ~~~i~e~f~ 171 (186)
T d2f7sa1 163 GQNVEKAVE 171 (186)
T ss_dssp TBTHHHHHH
T ss_pred CCCHHHHHH
Confidence 777766543
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=91.95 E-value=0.036 Score=52.04 Aligned_cols=27 Identities=26% Similarity=0.621 Sum_probs=23.4
Q ss_pred cCCCEEEEEcCCCCCHHHHHHHHcCCC
Q 020346 157 LRDQTTVIVGPSGVGKSSLINALRSSP 183 (327)
Q Consensus 157 l~g~~v~lvG~sG~GKSTLln~L~g~~ 183 (327)
+..+.+.+|||||||||-|.+.|++..
T Consensus 47 i~ksNILliGPTGvGKTlLAr~LAk~l 73 (443)
T d1g41a_ 47 VTPKNILMIGPTGVGKTEIARRLAKLA 73 (443)
T ss_dssp CCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred cccccEEEECCCCCCHHHHHHHHHHHh
Confidence 455689999999999999999998843
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=91.76 E-value=0.047 Score=48.07 Aligned_cols=33 Identities=30% Similarity=0.368 Sum_probs=25.3
Q ss_pred hHHHHHhhcCCCEEEEEcCCCCCHHHHHHHHcC
Q 020346 149 GLDSLLQRLRDQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 149 ~l~~l~~~l~g~~v~lvG~sG~GKSTLln~L~g 181 (327)
+++.+.-..+|++++|+|++|+|||||+-.+..
T Consensus 58 aID~l~pigkGQr~~If~~~g~GKt~l~~~i~~ 90 (276)
T d2jdid3 58 VVDLLAPYAKGGKIGLFGGAGVGKTVLIMELIN 90 (276)
T ss_dssp HHHHHSCEETTCEEEEEECTTSSHHHHHHHHHH
T ss_pred eeeeeccccCCCEEEeeCCCCCCHHHHHHHHHH
Confidence 344433334999999999999999999877754
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=91.71 E-value=0.074 Score=44.18 Aligned_cols=33 Identities=24% Similarity=0.435 Sum_probs=24.5
Q ss_pred hHHHHHhhc-C---CCEEEEEcCCCCCHHHHHHHHcC
Q 020346 149 GLDSLLQRL-R---DQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 149 ~l~~l~~~l-~---g~~v~lvG~sG~GKSTLln~L~g 181 (327)
+.+.+...+ . ...+.|.||+|+||||+.+.++.
T Consensus 10 ~~~~l~~~~~~~~l~h~lLl~Gp~G~GKtt~a~~~a~ 46 (207)
T d1a5ta2 10 DFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSR 46 (207)
T ss_dssp HHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCcCeEEEEECCCCCcHHHHHHHHHH
Confidence 445554443 2 34689999999999999998775
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=91.67 E-value=0.037 Score=50.61 Aligned_cols=23 Identities=30% Similarity=0.530 Sum_probs=19.4
Q ss_pred CCEEEEEcCCCCCHHHHHHHHcC
Q 020346 159 DQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 159 g~~v~lvG~sG~GKSTLln~L~g 181 (327)
...+.|+|+||+|||++++.|.-
T Consensus 50 ~~H~~I~G~tGsGKT~~l~~li~ 72 (433)
T d1e9ra_ 50 PRHLLVNGATGTGKSVLLRELAY 72 (433)
T ss_dssp GGCEEEEECTTSSHHHHHHHHHH
T ss_pred cceEEEEeCCCCcHHHHHHHHHH
Confidence 45689999999999999976654
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.54 E-value=0.13 Score=40.66 Aligned_cols=80 Identities=20% Similarity=0.268 Sum_probs=50.4
Q ss_pred ccccccccEEEEEeecCCCCCChHHHHHHHHHHH-------hcCCCEEEEeecCCCCcH----HHHHHHHhhhhhcCCce
Q 020346 71 DPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE-------STGIPLTLALNKVELVDE----EVLNTWKSRLHTWGYEP 139 (327)
Q Consensus 71 r~~~anvD~lliv~~~~~p~~~~~~l~r~L~~a~-------~~~~~~~ivlnK~Dl~~~----~~~~~~~~~~~~~~~~~ 139 (327)
.....++|.++++++...+. +...+..++.... ..+.|+++|.||.|+.+. ++...+...+ ..++.
T Consensus 73 ~~~~~~~~~~i~~~d~~~~~-s~~~~~~~~~~i~~~~~~~~~~~~piilVgnK~Dl~~~~v~~~~~~~~~~~~--~~~~~ 149 (174)
T d1wmsa_ 73 TPFYRGSDCCLLTFSVDDSQ-SFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCRDN--GDYPY 149 (174)
T ss_dssp GGGGTTCSEEEEEEETTCHH-HHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHHHT--TCCCE
T ss_pred hhhhhccceEEEEEeeeccc-ccchhhhHHHHHHHHhccccCCCceEEEeccccchhhccCcHHHHHHHHHHc--CCCeE
Confidence 34578999999999987542 3333444332221 135689999999999652 2233332222 23567
Q ss_pred eeccCcchhhHHHH
Q 020346 140 LFCSVESKLGLDSL 153 (327)
Q Consensus 140 ~~~s~~~~~~l~~l 153 (327)
+.+|+.++.+++.+
T Consensus 150 ~e~Sak~~~gI~e~ 163 (174)
T d1wmsa_ 150 FETSAKDATNVAAA 163 (174)
T ss_dssp EECCTTTCTTHHHH
T ss_pred EEEcCCCCcCHHHH
Confidence 88898888877776
|
| >d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=91.35 E-value=0.058 Score=49.67 Aligned_cols=33 Identities=27% Similarity=0.618 Sum_probs=23.2
Q ss_pred hHHHHHhhc---CCCEEEEEcCCCCCHHHHHHHHcC
Q 020346 149 GLDSLLQRL---RDQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 149 ~l~~l~~~l---~g~~v~lvG~sG~GKSTLln~L~g 181 (327)
-++.+...+ ....+.|||+||||||+++.-|+.
T Consensus 30 ei~~~~~~L~r~~k~n~llvG~~GvGKtaiv~~la~ 65 (387)
T d1qvra2 30 EIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQ 65 (387)
T ss_dssp HHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCCeEECCCCCCHHHHHHHHHH
Confidence 344444433 234589999999999999987664
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=91.27 E-value=0.056 Score=43.60 Aligned_cols=24 Identities=21% Similarity=0.386 Sum_probs=22.5
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcC
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g 181 (327)
+|.+++|-|+=|||||||.+.++.
T Consensus 32 ~g~ii~L~G~LGaGKTtfvr~~~~ 55 (158)
T d1htwa_ 32 KAIMVYLNGDLGAGKTTLTRGMLQ 55 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEecCCCccHHHHHHHHHh
Confidence 688999999999999999999887
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.13 E-value=0.15 Score=40.09 Aligned_cols=84 Identities=20% Similarity=0.236 Sum_probs=53.0
Q ss_pred ccccccccEEEEEeecCCCCCChHHHHHHHHH---HHhcCCCEEEEeecCCCCcHHH--HHHHHhhhhhcCCceeeccCc
Q 020346 71 DPPVANVDHLLLLFSMDQPKLEPFALTRFLVE---AESTGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLFCSVE 145 (327)
Q Consensus 71 r~~~anvD~lliv~~~~~p~~~~~~l~r~L~~---a~~~~~~~~ivlnK~Dl~~~~~--~~~~~~~~~~~~~~~~~~s~~ 145 (327)
.....++|.++++++...+. +...+..+... ......++++|.||.|+.+... .+........++++.+.+|+.
T Consensus 74 ~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~iilv~~k~d~~~~~~v~~~~~~~~~~~~~~~~~e~Sak 152 (170)
T d2g6ba1 74 HAYYRDAHALLLLYDVTNKA-SFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAK 152 (170)
T ss_dssp -CCGGGCSEEEEEEETTCHH-HHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTT
T ss_pred HHhhcCCceeEEEecCCccc-chhhhhhhhhhhhhccCCCceEEEEEeeechhhcccccHHHHHHHHHHcCCEEEEEeCC
Confidence 34567999999999987643 33344444332 2334567888999999875421 111222334467788899998
Q ss_pred chhhHHHHHh
Q 020346 146 SKLGLDSLLQ 155 (327)
Q Consensus 146 ~~~~l~~l~~ 155 (327)
+..+++.+-.
T Consensus 153 ~g~gi~e~f~ 162 (170)
T d2g6ba1 153 TGLNVDLAFT 162 (170)
T ss_dssp TCTTHHHHHH
T ss_pred CCcCHHHHHH
Confidence 8887776643
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.07 E-value=0.18 Score=39.68 Aligned_cols=79 Identities=13% Similarity=0.122 Sum_probs=48.1
Q ss_pred cccccEEEEEeecCCCCCChHHHHHHH---HH-HHhcCCCEEEEeecCCCCcHHH--HHHHHhhhhhcCCceeeccCcch
Q 020346 74 VANVDHLLLLFSMDQPKLEPFALTRFL---VE-AESTGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLFCSVESK 147 (327)
Q Consensus 74 ~anvD~lliv~~~~~p~~~~~~l~r~L---~~-a~~~~~~~~ivlnK~Dl~~~~~--~~~~~~~~~~~~~~~~~~s~~~~ 147 (327)
..++|.+++++++..|. +...+.++. .. ....+.|+++|.||+|+.+... .+........++++.+.+|+...
T Consensus 70 ~~~~~~~ilv~d~~~~~-s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~Saktg 148 (168)
T d2atva1 70 MRWGEGFVLVYDITDRG-SFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTG 148 (168)
T ss_dssp HHHCSEEEEEEETTCHH-HHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTTC
T ss_pred hcccccceeecccCCcc-chhhhhhhcccccccccccCcceeeeccchhhhhhccCcHHHHHHHHHHhCCeEEEEccccC
Confidence 46899999999998652 333343332 22 2235789999999999964321 11112223456778888888765
Q ss_pred hh-HHHH
Q 020346 148 LG-LDSL 153 (327)
Q Consensus 148 ~~-l~~l 153 (327)
.+ ++.+
T Consensus 149 ~gnV~e~ 155 (168)
T d2atva1 149 EGNITEI 155 (168)
T ss_dssp TTCHHHH
T ss_pred CcCHHHH
Confidence 53 5544
|
| >d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=91.02 E-value=0.068 Score=47.62 Aligned_cols=21 Identities=38% Similarity=0.797 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHcC
Q 020346 161 TTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g 181 (327)
++.++||||+|||.|.+.|+.
T Consensus 55 ~~lf~Gp~G~GKt~lak~la~ 75 (315)
T d1qvra3 55 SFLFLGPTGVGKTELAKTLAA 75 (315)
T ss_dssp EEEEBSCSSSSHHHHHHHHHH
T ss_pred EEEEECCCcchHHHHHHHHHH
Confidence 678999999999999999886
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.60 E-value=0.2 Score=40.02 Aligned_cols=50 Identities=14% Similarity=0.222 Sum_probs=33.8
Q ss_pred cccccccEEEEEeecCCCCCChHHHHHHH---HHHHhcCCCEEEEeecCCCCcH
Q 020346 72 PPVANVDHLLLLFSMDQPKLEPFALTRFL---VEAESTGIPLTLALNKVELVDE 122 (327)
Q Consensus 72 ~~~anvD~lliv~~~~~p~~~~~~l~r~L---~~a~~~~~~~~ivlnK~Dl~~~ 122 (327)
....++|.+++|+++..+. +...+..+. ......+.|+++|-||.|+.+.
T Consensus 69 ~~~~~~~~~ilv~d~~~~~-Sf~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~ 121 (179)
T d1m7ba_ 69 LSYPDSDAVLICFDISRPE-TLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTD 121 (179)
T ss_dssp GGCTTCSEEEEEEETTCHH-HHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGC
T ss_pred chhhhhhhhheeeecccCC-CHHHHHHHHHHHHhccCCcceEEEEEeccccccc
Confidence 3568999999999997653 223333222 2223457899999999998653
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.46 E-value=0.15 Score=40.68 Aligned_cols=80 Identities=20% Similarity=0.252 Sum_probs=48.2
Q ss_pred ccccccEEEEEeecCCCCCChHHHHH-HHH--HHHhcCCCEEEEeecCCCCcHHHHHHH--------------Hhhhhhc
Q 020346 73 PVANVDHLLLLFSMDQPKLEPFALTR-FLV--EAESTGIPLTLALNKVELVDEEVLNTW--------------KSRLHTW 135 (327)
Q Consensus 73 ~~anvD~lliv~~~~~p~~~~~~l~r-~L~--~a~~~~~~~~ivlnK~Dl~~~~~~~~~--------------~~~~~~~ 135 (327)
...++|.+++++++..+. +...+.. ++. .....+.|+++|.||+|+.++...... ....+++
T Consensus 73 ~~~~~~~~ilv~d~~~~~-sf~~i~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 151 (183)
T d1mh1a_ 73 SYPQTDVSLICFSLVSPA-SFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEI 151 (183)
T ss_dssp GCTTCSEEEEEEETTCHH-HHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHT
T ss_pred cccccceeeeeeccchHH-HHHHHHHHHHHHHHHhCCCCcEEEEeecccchhhhhhhhhhhhccccchhhHHHHHHHHHc
Confidence 467899999999987642 2223332 222 223456799999999998754322110 1111223
Q ss_pred C-CceeeccCcchhhHHHH
Q 020346 136 G-YEPLFCSVESKLGLDSL 153 (327)
Q Consensus 136 ~-~~~~~~s~~~~~~l~~l 153 (327)
+ +..+.+|+.++.+++.+
T Consensus 152 ~~~~~~E~SAk~~~~V~e~ 170 (183)
T d1mh1a_ 152 GAVKYLECSALTQRGLKTV 170 (183)
T ss_dssp TCSEEEECCTTTCTTHHHH
T ss_pred CCceEEEcCCCCCcCHHHH
Confidence 3 45677788887777765
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=90.15 E-value=0.62 Score=36.22 Aligned_cols=81 Identities=20% Similarity=0.265 Sum_probs=49.5
Q ss_pred ccccccEEEEEeecCCCCCChHHHHHHHHHHHhcCCCEEEEeecCCCCcHHH-HHHH-HhhhhhcCC-ceeeccCcchhh
Q 020346 73 PVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEV-LNTW-KSRLHTWGY-EPLFCSVESKLG 149 (327)
Q Consensus 73 ~~anvD~lliv~~~~~p~~~~~~l~r~L~~a~~~~~~~~ivlnK~Dl~~~~~-~~~~-~~~~~~~~~-~~~~~s~~~~~~ 149 (327)
..+.+|.++++.+..... . ..+.+.........++++|+||.|...... .... ......+++ +.+.+|+.++.+
T Consensus 82 ~~~~~~~~l~~~d~~~~~--~-~~~~~~~~l~~~~~~~i~v~~k~d~~~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g~g 158 (179)
T d1egaa1 82 SIGDVELVIFVVEGTRWT--P-DDEMVLNKLREGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLN 158 (179)
T ss_dssp CCCCEEEEEEEEETTCCC--H-HHHHHHHHHHSSSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTTT
T ss_pred chhhcceeEEEEecCccc--h-hHHHHHHHhhhccCceeeeeeeeeccchhhhhhhHhhhhhhhcCCCCEEEEeCcCCCC
Confidence 456778877777765422 1 223333334567789999999999876532 2221 222333453 678889888887
Q ss_pred HHHHHhh
Q 020346 150 LDSLLQR 156 (327)
Q Consensus 150 l~~l~~~ 156 (327)
++.|...
T Consensus 159 i~~L~~~ 165 (179)
T d1egaa1 159 VDTIAAI 165 (179)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7776544
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=90.14 E-value=0.068 Score=48.71 Aligned_cols=24 Identities=25% Similarity=0.631 Sum_probs=21.3
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcC
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g 181 (327)
+-..+.++||+|||||-|.+.|+.
T Consensus 67 p~~niLfiGPTGvGKTElAk~LA~ 90 (364)
T d1um8a_ 67 SKSNILLIGPTGSGKTLMAQTLAK 90 (364)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHH
T ss_pred CCcceeeeCCCCccHHHHHHHHHh
Confidence 456799999999999999999976
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.13 E-value=0.28 Score=38.20 Aligned_cols=83 Identities=11% Similarity=0.143 Sum_probs=52.1
Q ss_pred cccccccEEEEEeecCCCCCChHHHHHH---HHHHHhcCCCEEEEeecCCCCcHHHH-HHHHhhhhhcCCceeeccCcch
Q 020346 72 PPVANVDHLLLLFSMDQPKLEPFALTRF---LVEAESTGIPLTLALNKVELVDEEVL-NTWKSRLHTWGYEPLFCSVESK 147 (327)
Q Consensus 72 ~~~anvD~lliv~~~~~p~~~~~~l~r~---L~~a~~~~~~~~ivlnK~Dl~~~~~~-~~~~~~~~~~~~~~~~~s~~~~ 147 (327)
....++|.+++|++...|. +...+..+ .........+++++.+|.|+.+.... +........++++.+.+|+.+.
T Consensus 70 ~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~i~~~~k~d~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 148 (166)
T d1g16a_ 70 AYYRGAMGIILVYDITDER-TFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKELGIPFIESSAKND 148 (166)
T ss_dssp HHHTTEEEEEEEEETTCHH-HHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTCCSCHHHHHHHHHHHTCCEEECBTTTT
T ss_pred HHHhcCCEEEEEEECCCcc-CHHHHHhhhhhhhccccCcceeeeecchhhhhhhhhhHHHHHHHHHhcCCeEEEECCCCC
Confidence 3568999999999998753 22233333 32333345577888899988654211 1112223345778889999888
Q ss_pred hhHHHHHh
Q 020346 148 LGLDSLLQ 155 (327)
Q Consensus 148 ~~l~~l~~ 155 (327)
.+++++-.
T Consensus 149 ~~v~e~f~ 156 (166)
T d1g16a_ 149 DNVNEIFF 156 (166)
T ss_dssp BSHHHHHH
T ss_pred CCHHHHHH
Confidence 87776643
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=90.08 E-value=0.059 Score=48.39 Aligned_cols=24 Identities=25% Similarity=0.499 Sum_probs=20.2
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcC
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g 181 (327)
+...+.++||||+|||.|.++|++
T Consensus 122 ~~g~~l~~G~pG~GKT~la~ala~ 145 (321)
T d1w44a_ 122 ASGMVIVTGKGNSGKTPLVHALGE 145 (321)
T ss_dssp ESEEEEEECSSSSCHHHHHHHHHH
T ss_pred CCceEEEECCCCccHHHHHHHHHH
Confidence 344566689999999999999998
|
| >d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Cow (Bos taurus) [TaxId: 9913]
Probab=89.86 E-value=0.07 Score=47.09 Aligned_cols=32 Identities=31% Similarity=0.392 Sum_probs=24.7
Q ss_pred hHHHHHhhcCCCEEEEEcCCCCCHHHHHHHHc
Q 020346 149 GLDSLLQRLRDQTTVIVGPSGVGKSSLINALR 180 (327)
Q Consensus 149 ~l~~l~~~l~g~~v~lvG~sG~GKSTLln~L~ 180 (327)
+++.+.-..+|++++|+|++|+|||||+..+.
T Consensus 58 aID~l~pig~GQr~~If~~~g~GKt~ll~~~~ 89 (285)
T d2jdia3 58 AVDSLVPIGRGQRELIIGDRQTGKTSIAIDTI 89 (285)
T ss_dssp HHHHHSCCBTTCBCEEEESTTSSHHHHHHHHH
T ss_pred EEecccCccCCCEEEeecCCCCChHHHHHHHH
Confidence 44444333499999999999999999986554
|
| >d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication protein E1 helicase domain species: Human papillomavirus type 18 [TaxId: 333761]
Probab=89.56 E-value=0.11 Score=43.49 Aligned_cols=24 Identities=25% Similarity=0.391 Sum_probs=21.9
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcC
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g 181 (327)
+-.++.|.||+++|||++.++|+.
T Consensus 52 Kkn~i~~~GP~~TGKS~f~~sl~~ 75 (205)
T d1tuea_ 52 KKNCLVFCGPANTGKSYFGMSFIH 75 (205)
T ss_dssp TCSEEEEESCGGGCHHHHHHHHHH
T ss_pred CceEEEEECCCCccHHHHHHHHHH
Confidence 457899999999999999999987
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=89.27 E-value=0.48 Score=38.80 Aligned_cols=49 Identities=20% Similarity=0.346 Sum_probs=35.4
Q ss_pred ccccccEEEEEeecCCCCCChHHHHHHHHHHHhcCC-CEEEEeecCCCCcHH
Q 020346 73 PVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGI-PLTLALNKVELVDEE 123 (327)
Q Consensus 73 ~~anvD~lliv~~~~~p~~~~~~l~r~L~~a~~~~~-~~~ivlnK~Dl~~~~ 123 (327)
.+..+|.+++|.++.... .. +-.+.+..|...+. ++++++||+|+.++.
T Consensus 86 ~~~~aD~allVVda~~G~-~~-QT~~~~~~a~~~~~~~iIv~iNK~D~~~~~ 135 (196)
T d1d2ea3 86 GTAPLDGCILVVAANDGP-MP-QTREHLLLARQIGVEHVVVYVNKADAVQDS 135 (196)
T ss_dssp TSSCCSEEEEEEETTTCS-CH-HHHHHHHHHHHTTCCCEEEEEECGGGCSCH
T ss_pred HHhhcCeEEEEEEcCCCC-ch-hHHHHHHHHHHhcCCcEEEEEecccccccH
Confidence 468899999999998743 33 44555666666666 566679999998643
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.73 E-value=0.15 Score=40.13 Aligned_cols=84 Identities=14% Similarity=0.186 Sum_probs=53.3
Q ss_pred cccccccEEEEEeecCCCCCChHHHHHHHHH---HHhcCCCEEEEeecCCCCcHH-----HHHHHHhhhhhcCCceeecc
Q 020346 72 PPVANVDHLLLLFSMDQPKLEPFALTRFLVE---AESTGIPLTLALNKVELVDEE-----VLNTWKSRLHTWGYEPLFCS 143 (327)
Q Consensus 72 ~~~anvD~lliv~~~~~p~~~~~~l~r~L~~---a~~~~~~~~ivlnK~Dl~~~~-----~~~~~~~~~~~~~~~~~~~s 143 (327)
....++|.++++++...+. +...+..+... ......++++|.||.|+.+.. ...........++++.+.+|
T Consensus 71 ~~~~~~~~~ilv~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~~~v~nk~d~~~~~~~~~v~~~~~~~~~~~~~~~~~e~S 149 (170)
T d1ek0a_ 71 MYYRNAQAALVVYDVTKPQ-SFIKARHWVKELHEQASKDIIIALVGNKIDMLQEGGERKVAREEGEKLAEEKGLLFFETS 149 (170)
T ss_dssp HHHTTCSEEEEEEETTCHH-HHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECC
T ss_pred HHHhccceEEEEEeCCccc-chhhhhhhhhhhccccccccceeeeecccccccccchhhhhHHHHHHHHHHcCCEEEEec
Confidence 3578999999999997642 33344444322 223456889999999985431 01111223344677888899
Q ss_pred CcchhhHHHHHhh
Q 020346 144 VESKLGLDSLLQR 156 (327)
Q Consensus 144 ~~~~~~l~~l~~~ 156 (327)
+.+..+++++-..
T Consensus 150 ak~g~gV~e~F~~ 162 (170)
T d1ek0a_ 150 AKTGENVNDVFLG 162 (170)
T ss_dssp TTTCTTHHHHHHH
T ss_pred CCCCcCHHHHHHH
Confidence 9888888876444
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.61 E-value=0.24 Score=39.24 Aligned_cols=83 Identities=17% Similarity=0.151 Sum_probs=54.0
Q ss_pred cccccccEEEEEeecCCCCCChHHHHHHHHHHH----hcCCCEEEEeecCCCCcHHH-HHHHHhhhhhcCCceeeccCcc
Q 020346 72 PPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE----STGIPLTLALNKVELVDEEV-LNTWKSRLHTWGYEPLFCSVES 146 (327)
Q Consensus 72 ~~~anvD~lliv~~~~~p~~~~~~l~r~L~~a~----~~~~~~~ivlnK~Dl~~~~~-~~~~~~~~~~~~~~~~~~s~~~ 146 (327)
..+.++|.+++|+++..+. +...+..++.... ....+++++.||.|..+... ........+..++..+.+|+.+
T Consensus 75 ~~~~~~~~ii~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~~i~~~~nk~d~~~~~v~~~~~~~~~~~~~~~~~e~Sa~t 153 (177)
T d1x3sa1 75 SYYRGAQGVILVYDVTRRD-TFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFARKHSMLFIEASAKT 153 (177)
T ss_dssp HHHTTCCEEEEEEETTCHH-HHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHHHHHHTTCEEEECCTTT
T ss_pred HHHhcCCEEEEEEECCCcc-ccccchhhhhhhcccccccceeeEEEeeccccccccccHHHHHHHHHHCCCEEEEEeCCC
Confidence 3568999999999987642 2334455554433 33456789999999865331 1222334455678888999988
Q ss_pred hhhHHHHHh
Q 020346 147 KLGLDSLLQ 155 (327)
Q Consensus 147 ~~~l~~l~~ 155 (327)
+.+++++-.
T Consensus 154 g~gv~e~f~ 162 (177)
T d1x3sa1 154 CDGVQCAFE 162 (177)
T ss_dssp CTTHHHHHH
T ss_pred CCCHHHHHH
Confidence 888777644
|
| >d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.38 E-value=0.11 Score=39.91 Aligned_cols=24 Identities=25% Similarity=0.184 Sum_probs=21.7
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcC
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g 181 (327)
+|-++.+-|-||+|||||-++|.-
T Consensus 5 qgf~i~~tg~~~~gk~~ia~al~~ 28 (122)
T d1g8fa3 5 QGFSIVLGNSLTVSREQLSIALLS 28 (122)
T ss_dssp CCEEEEECTTCCSCHHHHHHHHHH
T ss_pred cceEEEEeCCCCCCHHHHHHHHHH
Confidence 577899999999999999999965
|
| >d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Rep 40 protein helicase domain species: Adeno-associated virus 2, AAV2 [TaxId: 10804]
Probab=88.36 E-value=0.12 Score=45.02 Aligned_cols=24 Identities=25% Similarity=0.542 Sum_probs=21.3
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcC
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g 181 (327)
+-.++.|.||+++|||||+++|..
T Consensus 103 k~n~~~l~G~~~tGKS~f~~~i~~ 126 (267)
T d1u0ja_ 103 KRNTIWLFGPATTGKTNIAEAIAH 126 (267)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHH
T ss_pred ccEEEEEEcCCCCCHHHHHHHHHH
Confidence 345889999999999999999987
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=88.08 E-value=0.34 Score=37.73 Aligned_cols=82 Identities=11% Similarity=0.126 Sum_probs=48.1
Q ss_pred ccccccEEEEEeecCCCCCChHHHH----HHHHHHHhcCCCEEEEeecCCCCcHHHHHHHHhh-----hhhcCCceeecc
Q 020346 73 PVANVDHLLLLFSMDQPKLEPFALT----RFLVEAESTGIPLTLALNKVELVDEEVLNTWKSR-----LHTWGYEPLFCS 143 (327)
Q Consensus 73 ~~anvD~lliv~~~~~p~~~~~~l~----r~L~~a~~~~~~~~ivlnK~Dl~~~~~~~~~~~~-----~~~~~~~~~~~s 143 (327)
.....+.++++++..... +..... ...........|+++|.||.|+............ ....+.+.+.+|
T Consensus 79 ~~~~~~~~i~v~d~~d~~-~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~S 157 (177)
T d1zj6a1 79 YYTNTEFVIVVVDSTDRE-RISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACC 157 (177)
T ss_dssp HHTTCCEEEEEEETTCTT-THHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECB
T ss_pred hhccceeeeeeccccccc-chhhhhhhhhhhhhcccccceEEEEEEEcccccccCcHHHHHHHHHHHhhHhcCCEEEEEe
Confidence 356788888888876532 222221 1222223467799999999998644322211111 122345678889
Q ss_pred CcchhhHHHHHh
Q 020346 144 VESKLGLDSLLQ 155 (327)
Q Consensus 144 ~~~~~~l~~l~~ 155 (327)
+.++.+++++-.
T Consensus 158 a~tg~Gi~e~~~ 169 (177)
T d1zj6a1 158 ALTGEGLCQGLE 169 (177)
T ss_dssp TTTTBTHHHHHH
T ss_pred CCCCCCHHHHHH
Confidence 998888887543
|
| >d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Equine herpesvirus type 4 [TaxId: 10331]
Probab=88.02 E-value=0.18 Score=45.26 Aligned_cols=21 Identities=29% Similarity=0.368 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHcC
Q 020346 161 TTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g 181 (327)
+|.|=|+-||||||+++.|..
T Consensus 8 rI~iEG~iGsGKSTl~~~L~~ 28 (333)
T d1p6xa_ 8 RIYLDGVYGIGKSTTGRVMAS 28 (333)
T ss_dssp EEEEECSTTSSHHHHHHHHHS
T ss_pred EEEEECCccCCHHHHHHHHHH
Confidence 578999999999999999997
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=87.98 E-value=0.15 Score=44.30 Aligned_cols=24 Identities=25% Similarity=0.385 Sum_probs=21.0
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcC
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g 181 (327)
.|.++-|.|+||+|||||.=.++.
T Consensus 53 ~g~itei~G~~gsGKTtl~l~~~~ 76 (263)
T d1u94a1 53 MGRIVEIYGPESSGKTTLTLQVIA 76 (263)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEEecCCCcHHHHHHHHHHH
Confidence 678999999999999999866665
|
| >d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Escherichia coli, RepD [TaxId: 562]
Probab=87.81 E-value=0.11 Score=44.53 Aligned_cols=18 Identities=22% Similarity=0.516 Sum_probs=14.5
Q ss_pred CCEEEEEcCCCCCHHHHH
Q 020346 159 DQTTVIVGPSGVGKSSLI 176 (327)
Q Consensus 159 g~~v~lvG~sG~GKSTLl 176 (327)
.....|+|++|+||||++
T Consensus 14 ~~~~lI~g~aGTGKTt~l 31 (306)
T d1uaaa1 14 TGPCLVLAGAGSGKTRVI 31 (306)
T ss_dssp SSEEEECCCTTSCHHHHH
T ss_pred CCCEEEEeeCCccHHHHH
Confidence 345789999999999764
|
| >d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=87.76 E-value=0.14 Score=42.96 Aligned_cols=21 Identities=29% Similarity=0.507 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHHcC
Q 020346 161 TTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g 181 (327)
.++++|.-++|||||+..|+.
T Consensus 5 Ni~viGHVd~GKTTL~~~Ll~ 25 (224)
T d1jnya3 5 NLIVIGHVDHGKSTLVGRLLM 25 (224)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEecCCCCHHHHHHHHHH
Confidence 589999999999999998853
|
| >d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Exodeoxyribonuclease V alpha chain (RecD) species: Escherichia coli [TaxId: 562]
Probab=87.65 E-value=0.16 Score=46.06 Aligned_cols=23 Identities=30% Similarity=0.546 Sum_probs=19.2
Q ss_pred hcCCCEEEEEcCCCCCHHHHHHH
Q 020346 156 RLRDQTTVIVGPSGVGKSSLINA 178 (327)
Q Consensus 156 ~l~g~~v~lvG~sG~GKSTLln~ 178 (327)
.+.+..+.|.|++|+||||++..
T Consensus 160 al~~~~~vI~G~pGTGKTt~i~~ 182 (359)
T d1w36d1 160 ALTRRISVISGGPGTGKTTTVAK 182 (359)
T ss_dssp HHTBSEEEEECCTTSTHHHHHHH
T ss_pred HHcCCeEEEEcCCCCCceehHHH
Confidence 34678999999999999998743
|
| >d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Bacillus stearothermophilus, PcrA [TaxId: 1422]
Probab=87.58 E-value=0.12 Score=44.84 Aligned_cols=18 Identities=22% Similarity=0.541 Sum_probs=14.7
Q ss_pred CCEEEEEcCCCCCHHHHH
Q 020346 159 DQTTVIVGPSGVGKSSLI 176 (327)
Q Consensus 159 g~~v~lvG~sG~GKSTLl 176 (327)
+..+.|.|++|+||||.+
T Consensus 24 ~g~~lV~g~aGSGKTt~l 41 (318)
T d1pjra1 24 EGPLLIMAGAGSGKTRVL 41 (318)
T ss_dssp SSCEEEEECTTSCHHHHH
T ss_pred CCCEEEEecCCccHHHHH
Confidence 345789999999999865
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=87.40 E-value=0.62 Score=40.47 Aligned_cols=70 Identities=17% Similarity=0.274 Sum_probs=45.8
Q ss_pred ccccccEEEEEeecCCCCCChHHHHHHHHHHHhcCCCEEEEeecCCCCcHHHHHHHHhhhhhcCCceeeccC
Q 020346 73 PVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSV 144 (327)
Q Consensus 73 ~~anvD~lliv~~~~~p~~~~~~l~r~L~~a~~~~~~~~ivlnK~Dl~~~~~~~~~~~~~~~~~~~~~~~s~ 144 (327)
.++-+|.+++|.++... ... .-.+....+...+.|.++++||+|.....-.......-..++.+++.+.+
T Consensus 91 ~l~~~D~avlVvda~~G-v~~-~T~~~w~~a~~~~lP~i~fINKmDr~~ad~~~~l~ei~~~l~~~~vp~~~ 160 (276)
T d2bv3a2 91 SMRVLDGAIVVFDSSQG-VEP-QSETVWRQAEKYKVPRIAFANKMDKTGADLWLVIRTMQERLGARPVVMQL 160 (276)
T ss_dssp HHHHCCEEEEEEETTTS-SCH-HHHHHHHHHHTTTCCEEEEEECTTSTTCCHHHHHHHHHHTTCCCEEECEE
T ss_pred HHHhhhheEEeccccCC-cch-hHHHHHHHHHHcCCCEEEEEecccccccccchhHHHHHHHhCCCeEEEEe
Confidence 47889999999998753 333 45666677788899999999999986432211111222235555555544
|
| >d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.08 E-value=0.16 Score=43.33 Aligned_cols=20 Identities=30% Similarity=0.443 Sum_probs=18.5
Q ss_pred EEEEEcCCCCCHHHHHHHHc
Q 020346 161 TTVIVGPSGVGKSSLINALR 180 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~ 180 (327)
.++++|..++|||||+..|+
T Consensus 8 Ni~iiGHvD~GKsTl~~~ll 27 (239)
T d1f60a3 8 NVVVIGHVDSGKSTTTGHLI 27 (239)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 68999999999999998885
|
| >d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]
Probab=86.76 E-value=0.071 Score=46.83 Aligned_cols=32 Identities=22% Similarity=0.405 Sum_probs=24.0
Q ss_pred hHHHHHhhcCCCEEEEEcCCCCCHHHHHHHHc
Q 020346 149 GLDSLLQRLRDQTTVIVGPSGVGKSSLINALR 180 (327)
Q Consensus 149 ~l~~l~~~l~g~~v~lvG~sG~GKSTLln~L~ 180 (327)
++|.+.-..+|++++|+|++|+|||+|+..+.
T Consensus 57 ~ID~l~pig~GQr~~Ifg~~g~GKt~l~~~~~ 88 (276)
T d1fx0a3 57 AIDAMIPVGRGQRELIIGDRQTGKTAVATDTI 88 (276)
T ss_dssp TTTTTSCCBTTCBCBEEESSSSSHHHHHHHHH
T ss_pred EEeccccccCCceEeeccCCCCChHHHHHHHH
Confidence 34443333499999999999999999986543
|
| >d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Eukaryotic peptide chain release factor ERF2, G domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=86.19 E-value=0.13 Score=43.87 Aligned_cols=20 Identities=30% Similarity=0.431 Sum_probs=18.4
Q ss_pred EEEEEcCCCCCHHHHHHHHc
Q 020346 161 TTVIVGPSGVGKSSLINALR 180 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~ 180 (327)
.++++|.-++|||||+..|+
T Consensus 26 Ni~iiGHVD~GKSTL~~~Ll 45 (245)
T d1r5ba3 26 NIVFIGHVDAGKSTLGGNIL 45 (245)
T ss_dssp EEEEEECGGGTHHHHHHHHH
T ss_pred EEEEEeeCCCCHHHHHHHHH
Confidence 48999999999999999994
|
| >d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Herpes simplex virus type 1, different strains [TaxId: 10298]
Probab=86.12 E-value=0.15 Score=45.69 Aligned_cols=21 Identities=33% Similarity=0.564 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHcC
Q 020346 161 TTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g 181 (327)
.|+|=|+=||||||+++.|..
T Consensus 6 rI~IEG~iGsGKTTl~~~La~ 26 (329)
T d1e2ka_ 6 RVYIDGPHGMGKTTTTQLLVA 26 (329)
T ss_dssp EEEECSCTTSSHHHHHHHHTC
T ss_pred EEEEECCcCCCHHHHHHHHHH
Confidence 588999999999999999986
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=85.66 E-value=3 Score=31.11 Aligned_cols=85 Identities=13% Similarity=0.069 Sum_probs=50.2
Q ss_pred ccccccccEEEEEeecCCCCCChHHHHH-HHHHH---HhcCCCEEEEeecCCCCcHHHHHHHHh-----hhhhcCCceee
Q 020346 71 DPPVANVDHLLLLFSMDQPKLEPFALTR-FLVEA---ESTGIPLTLALNKVELVDEEVLNTWKS-----RLHTWGYEPLF 141 (327)
Q Consensus 71 r~~~anvD~lliv~~~~~p~~~~~~l~r-~L~~a---~~~~~~~~ivlnK~Dl~~~~~~~~~~~-----~~~~~~~~~~~ 141 (327)
......++.++++++...+.. ...... ..... .....+++++.||.|+.+......... ......++.+.
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~iv~nk~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~ 145 (169)
T d1upta_ 67 RCYYSNTDAVIYVVDSCDRDR-IGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFK 145 (169)
T ss_dssp GGGCTTCSEEEEEEETTCCTT-HHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCEEEEE
T ss_pred hhhhhhhhhhhhhhhhhhcch-hhhccchhhhhhhhhccccceEEEEEeeccccccccHHHHHHHHHHHHHhcCCCEEEE
Confidence 345678888888888765432 333322 22222 234557889999999975432111111 12223457788
Q ss_pred ccCcchhhHHHHHhh
Q 020346 142 CSVESKLGLDSLLQR 156 (327)
Q Consensus 142 ~s~~~~~~l~~l~~~ 156 (327)
+|+.++.+++.+-..
T Consensus 146 ~SA~~g~gv~e~~~~ 160 (169)
T d1upta_ 146 TSATKGTGLDEAMEW 160 (169)
T ss_dssp CCTTTCTTHHHHHHH
T ss_pred EeCCCCCCHHHHHHH
Confidence 999988888876544
|
| >d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Varicella-zoster virus [TaxId: 10335]
Probab=85.55 E-value=0.16 Score=45.56 Aligned_cols=22 Identities=18% Similarity=0.341 Sum_probs=20.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHcC
Q 020346 160 QTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 160 ~~v~lvG~sG~GKSTLln~L~g 181 (327)
-+|+|=|+=||||||++|.|..
T Consensus 6 lrI~IEG~iGsGKSTl~~~L~~ 27 (331)
T d1osna_ 6 LRIYLDGAYGIGKTTAAEEFLH 27 (331)
T ss_dssp EEEEEEESSSSCTTHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3688999999999999999986
|
| >d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Escherichia coli [TaxId: 562]
Probab=85.36 E-value=0.2 Score=44.58 Aligned_cols=19 Identities=37% Similarity=0.648 Sum_probs=17.3
Q ss_pred CCCEEEEEcCCCCCHHHHH
Q 020346 158 RDQTTVIVGPSGVGKSSLI 176 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLl 176 (327)
.|++..+.|-||+|||||-
T Consensus 13 ~~~~alfFGLSGTGKTTLs 31 (313)
T d2olra1 13 KGDVAVFFGLSGTGKTTLS 31 (313)
T ss_dssp TSCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEEccCCCCcccce
Confidence 4788999999999999985
|
| >d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Thermus thermophilus [TaxId: 274]
Probab=85.21 E-value=0.21 Score=44.58 Aligned_cols=19 Identities=37% Similarity=0.608 Sum_probs=17.2
Q ss_pred CCCEEEEEcCCCCCHHHHH
Q 020346 158 RDQTTVIVGPSGVGKSSLI 176 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLl 176 (327)
.|.+..+.|-||+|||||-
T Consensus 13 ~~~valffGLSGTGKTTLs 31 (318)
T d1j3ba1 13 EGDVAVFFGLSGTGKTTLS 31 (318)
T ss_dssp TCCEEEEEECTTSCHHHHT
T ss_pred CCCEEEEEccCCCCccccc
Confidence 4788999999999999985
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=85.03 E-value=0.42 Score=36.18 Aligned_cols=83 Identities=16% Similarity=0.053 Sum_probs=51.5
Q ss_pred ccccccEEEEEeecCCCCCChHHHHHHHHHH----HhcCCCEEEEeecCCCCcHHHHHHHH-----hhhhhcCCceeecc
Q 020346 73 PVANVDHLLLLFSMDQPKLEPFALTRFLVEA----ESTGIPLTLALNKVELVDEEVLNTWK-----SRLHTWGYEPLFCS 143 (327)
Q Consensus 73 ~~anvD~lliv~~~~~p~~~~~~l~r~L~~a----~~~~~~~~ivlnK~Dl~~~~~~~~~~-----~~~~~~~~~~~~~s 143 (327)
...+.|.++++++...+.. ...+...+... .....+++++.||.|+.+.....+.. ......++..+.+|
T Consensus 64 ~~~~~~~~i~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~v~~k~d~~~~~~~~~i~~~~~~~~~~~~~~~~~~~S 142 (160)
T d1r8sa_ 64 YFQNTQGLIFVVDSNDRER-VNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATC 142 (160)
T ss_dssp HTTTCSEEEEEEETTCGGG-HHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECB
T ss_pred hhccceeEEEEEEecChHH-HHHHHHHHHHHHHhhcccCceEEEEeecccccccccHHHHHHHHHHHHHhhCCCEEEEeE
Confidence 4678999999998876532 22333332222 23456889999999987532211111 12233466778899
Q ss_pred CcchhhHHHHHhh
Q 020346 144 VESKLGLDSLLQR 156 (327)
Q Consensus 144 ~~~~~~l~~l~~~ 156 (327)
+.++.+++++-..
T Consensus 143 Aktg~gi~e~~~~ 155 (160)
T d1r8sa_ 143 ATSGDGLYEGLDW 155 (160)
T ss_dssp TTTTBTHHHHHHH
T ss_pred CCCCCCHHHHHHH
Confidence 9998888877544
|
| >d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=84.37 E-value=0.44 Score=40.35 Aligned_cols=49 Identities=16% Similarity=0.186 Sum_probs=35.5
Q ss_pred ccccccEEEEEeecCCCCC-----ChHHHHHHHHHHHhcCCCE-EEEeecCCCCc
Q 020346 73 PVANVDHLLLLFSMDQPKL-----EPFALTRFLVEAESTGIPL-TLALNKVELVD 121 (327)
Q Consensus 73 ~~anvD~lliv~~~~~p~~-----~~~~l~r~L~~a~~~~~~~-~ivlnK~Dl~~ 121 (327)
.++-+|.+++|.++....+ -..+....+..|...+.+. ++++||+|+.+
T Consensus 104 g~~~~D~ailvvda~~G~~e~g~~~~~QT~eh~~~~~~~gv~~iiv~iNKmD~~~ 158 (239)
T d1f60a3 104 GTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGVRQLIVAVNKMDSVK 158 (239)
T ss_dssp SSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHTTCCEEEEEEECGGGGT
T ss_pred HHHHhCEEEEEEECCCCccccccCchHhHHHHHHHHHHcCCCeEEEEEECCCCCC
Confidence 4789999999998864321 1124566677788888875 56799999975
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=83.56 E-value=2.1 Score=34.53 Aligned_cols=49 Identities=22% Similarity=0.170 Sum_probs=28.6
Q ss_pred cccEEEEEeecCCCCCChHHHHHH----HHHHHhcCCCEEEEeecCCCCcHHHH
Q 020346 76 NVDHLLLLFSMDQPKLEPFALTRF----LVEAESTGIPLTLALNKVELVDEEVL 125 (327)
Q Consensus 76 nvD~lliv~~~~~p~~~~~~l~r~----L~~a~~~~~~~~ivlnK~Dl~~~~~~ 125 (327)
..+.++.+.++.. ..++...... ......-..+.++|+||+|+.+.+..
T Consensus 123 ~~~~~v~vvd~~~-~~~~~~~~~~~l~~~~~~~~~~~~~ivvinK~D~~~~~~~ 175 (244)
T d1yrba1 123 PYPLVVYISDPEI-LKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEEEK 175 (244)
T ss_dssp SSCEEEEEECGGG-CCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGGCCHHHH
T ss_pred cCceEEEEecccc-ccCchhHhhHHHHHHHHHHHhCCCceeeeeccccccHHHH
Confidence 4556666666642 3343322111 11223447789999999999986543
|
| >d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Trypanosoma cruzi [TaxId: 5693]
Probab=83.33 E-value=0.28 Score=43.79 Aligned_cols=19 Identities=42% Similarity=0.660 Sum_probs=17.5
Q ss_pred CCCEEEEEcCCCCCHHHHH
Q 020346 158 RDQTTVIVGPSGVGKSSLI 176 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLl 176 (327)
.|.+..+.|-||+|||||-
T Consensus 13 ~gd~alfFGLSGTGKTTLs 31 (323)
T d1ii2a1 13 QGDVTVFFGLSGTGKTTLS 31 (323)
T ss_dssp TCCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEEccCCCCcccce
Confidence 5788999999999999996
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=83.20 E-value=0.8 Score=39.47 Aligned_cols=46 Identities=20% Similarity=0.273 Sum_probs=37.0
Q ss_pred ccccccEEEEEeecCCCCCChHHHHHHHHHHHhcCCCEEEEeecCCCC
Q 020346 73 PVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELV 120 (327)
Q Consensus 73 ~~anvD~lliv~~~~~p~~~~~~l~r~L~~a~~~~~~~~ivlnK~Dl~ 120 (327)
.+..+|.+++|.++... ... ...+.+..+...++|.++++||+|..
T Consensus 87 al~~~D~avlvvda~~G-v~~-~t~~~~~~~~~~~~p~~i~iNk~D~~ 132 (267)
T d2dy1a2 87 ALEAADAALVAVSAEAG-VQV-GTERAWTVAERLGLPRMVVVTKLDKG 132 (267)
T ss_dssp HHHHCSEEEEEEETTTC-SCH-HHHHHHHHHHHTTCCEEEEEECGGGC
T ss_pred hhcccCceEEEeeccCC-ccc-hhHHHHHhhhhccccccccccccccc
Confidence 47889999999998764 333 55666677788999999999999974
|
| >d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=83.00 E-value=0.21 Score=37.78 Aligned_cols=22 Identities=32% Similarity=0.392 Sum_probs=17.2
Q ss_pred CCEEEEEcCCCCCHHHHHHHHc
Q 020346 159 DQTTVIVGPSGVGKSSLINALR 180 (327)
Q Consensus 159 g~~v~lvG~sG~GKSTLln~L~ 180 (327)
.++..|.+|+|+|||+++-.+.
T Consensus 8 ~~~~ll~apTGsGKT~~~~~~~ 29 (136)
T d1a1va1 8 FQVAHLHAPTGSGKSTKVPAAY 29 (136)
T ss_dssp CEEEEEECCTTSCTTTHHHHHH
T ss_pred CCEEEEEeCCCCCHHHHHHHHH
Confidence 3567889999999999885433
|
| >d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Probab=82.59 E-value=0.16 Score=37.85 Aligned_cols=19 Identities=32% Similarity=0.366 Sum_probs=16.3
Q ss_pred CCCEEEEEcCCCCCHHHHH
Q 020346 158 RDQTTVIVGPSGVGKSSLI 176 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLl 176 (327)
+|+.+.|.+|+|+|||...
T Consensus 6 ~~~~~il~~~tGsGKT~~~ 24 (140)
T d1yksa1 6 KGMTTVLDFHPGAGKTRRF 24 (140)
T ss_dssp TTCEEEECCCTTSSTTTTH
T ss_pred cCCcEEEEcCCCCChhHHH
Confidence 6889999999999999443
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=82.52 E-value=0.38 Score=41.69 Aligned_cols=24 Identities=38% Similarity=0.529 Sum_probs=21.6
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcC
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g 181 (327)
.|.++-|.|++|+|||||.-.++.
T Consensus 56 ~g~itei~G~~~sGKT~l~l~~~~ 79 (268)
T d1xp8a1 56 RGRITEIYGPESGGKTTLALAIVA 79 (268)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CceEEEEecCCccchHHHHHHHHH
Confidence 678999999999999999977776
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=82.21 E-value=0.39 Score=41.65 Aligned_cols=24 Identities=25% Similarity=0.396 Sum_probs=20.4
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcC
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g 181 (327)
.|.++-|.|++|+|||||.-.++.
T Consensus 59 ~g~i~e~~G~~~~GKT~l~l~~~~ 82 (269)
T d1mo6a1 59 RGRVIEIYGPESSGKTTVALHAVA 82 (269)
T ss_dssp SSSEEEEECSSSSSHHHHHHHHHH
T ss_pred cceeEEEecCCCcHHHHHHHHHHH
Confidence 689999999999999999755543
|
| >d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Eukaryotic peptide chain release factor ERF2, G domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=80.95 E-value=0.68 Score=39.19 Aligned_cols=49 Identities=22% Similarity=0.252 Sum_probs=32.6
Q ss_pred ccccccEEEEEeecCCCC----CChH-HHHHHHHHHHhcCCC-EEEEeecCCCCc
Q 020346 73 PVANVDHLLLLFSMDQPK----LEPF-ALTRFLVEAESTGIP-LTLALNKVELVD 121 (327)
Q Consensus 73 ~~anvD~lliv~~~~~p~----~~~~-~l~r~L~~a~~~~~~-~~ivlnK~Dl~~ 121 (327)
.++-+|.+++|.++.... +... +....+..+...+.+ +++++||+|+..
T Consensus 122 g~~~aD~ailVVda~~G~~~~~~~~~~QT~e~l~l~~~~~i~~iiv~iNKmD~~~ 176 (245)
T d1r5ba3 122 GASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPS 176 (245)
T ss_dssp -TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTT
T ss_pred hhhhhcceeeEEEcCCCccCCccccccchHHHHHHHHHcCCCeEEEEEEcCCCCc
Confidence 468899999999986532 1111 344455556666775 668899999863
|
| >d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain species: Aquifex aeolicus [TaxId: 63363]
Probab=80.43 E-value=0.68 Score=39.22 Aligned_cols=23 Identities=30% Similarity=0.528 Sum_probs=20.6
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHc
Q 020346 158 RDQTTVIVGPSGVGKSSLINALR 180 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~ 180 (327)
.+.-+.|.|++|+||+++.++|.
T Consensus 22 ~~~pvlI~Ge~GtGK~~~A~~ih 44 (247)
T d1ny5a2 22 AECPVLITGESGVGKEVVARLIH 44 (247)
T ss_dssp CCSCEEEECSTTSSHHHHHHHHH
T ss_pred CCCCEEEECCCCcCHHHHHHHHH
Confidence 46779999999999999999985
|