Citrus Sinensis ID: 020387

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------

MALPQLIHHHPPSTSSLPSLNPNTMLNLKSYRLLSKSSSTLFHRRKKPNYLRCSASSFSEKHHTNSPKSDDVVELPLFPLPLVLFPGAILPLQIFEFRYRIMMHTLLQTDLRFGVIYSDAVSGTSEVGCVGEIVKHECLVDDRFFLICKGQERFRVTSVVRTKPYLVAEVAWLEDRPSGEEDLDALANDVETYMKDVIRLSNRLNGKPEKEVVDLRRNLFPTPFSFFVGSTFEGAPREQQALLELEDTAARLKREKETLRNTLNYLTAASAVKDVFPSSRWCIFFHYPLGCSENCLLPANVFEVSELGTPARFSDCGSWPVSYPENN

cccccccccccccccccccccccccccHHHHHHHccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccEEEEEEEccccccccccEEEEEEEcEEccccEEEEEEEEccEEEEEEEEccccEEEEEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHccccccHHHHHHHHHcccccHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccccHHHHHHccccccccccccccccccccc

ccccHHccccccccccccccccccccccHHHcccccccHHHHHHHHHHHHHHHHHHcccHHHHHcccccccEEEcccccccEEEccccccccccccHHHHHHHHHHHcccccEEEEEEccccccccEEEEEEEEEEEEcccccEEEEEEccEEEEEEEEEcccccEEEEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHccccHHccccccccccccHHHHHHHHHHccccHHHHHHHccHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEccccccccccccccEEEEEcccccccccccccccccccccc

malpqlihhhppstsslpslnpntmlnlKSYRLLSKssstlfhrrkkpnylrcsassfsekhhtnspksddvvelplfplplvlfpgailplqIFEFRYRIMMHTLLQTDLRfgviysdavsgtsevgcvgeivkheclvddrfFLICKGQERFRVTSVVRTKPYLVAEVAwledrpsgeeDLDALANDVETYMKDVIRLsnrlngkpekEVVDLRrnlfptpfsffvgstfegaprEQQALLELEDTAARLKREKETLRNTLNYLTAAsavkdvfpssrwciffhyplgcsencllpanvfevselgtparfsdcgswpvsypenn

malpqlihhhppstsslpslnPNTMLNLKSYRLLSKSSstlfhrrkkpnylRCSASSFSEKHHTNSPKSDDVVELPLFPLPLVLFPGAILPLQIFEFRYRIMMHTLLQTDLRFGVIYSDAVSGTSEVGCVGEIVKHECLVDDRFFLIckgqerfrvtsvvrtkpyLVAEvawledrpsgeEDLDALANDVETYMKDVIrlsnrlngkpeKEVVDLRRNLFPTPFSFFVGSTFEGAPREQQALLELEDTAARLKREKETLRNTLNYLTAASAVKDVFPSSRWCIFFHYPLGCSENCLLPANVFEVSELGTparfsdcgswpvsypenn

MALPQLIHHHppstsslpslnpntMlnlksyrllskssstlFHRRKKPNYLRCSASSFSEKHHTNSPKSDDvvelplfplplvlfpGAILPLQIFEFRYRIMMHTLLQTDLRFGVIYSDAVSGTSEVGCVGEIVKHECLVDDRFFLICKGQERFRVTSVVRTKPYLVAEVAWLEDRPSGEEDLDALANDVETYMKDVIRLSNRLNGKPEKEVVDLRRNLFPTPFSFFVGSTFEGAPREQQALLELEDTAARLKREKETLRNTLNYLTAASAVKDVFPSSRWCIFFHYPLGCSENCLLPANVFEVSELGTPARFSDCGSWPVSYPENN

***********************************************************************VVELPLFPLPLVLFPGAILPLQIFEFRYRIMMHTLLQTDLRFGVIYSDAVSGTSEVGCVGEIVKHECLVDDRFFLICKGQERFRVTSVVRTKPYLVAEVAWLED*******LDALANDVETYMKDVIRLSNRLNGK*EKEVVDLRRNLFPTPFSFFVGSTFEG***********************TLRNTLNYLTAASAVKDVFPSSRWCIFFHYPLGCSENCLLPANVFEVSELGTPARFSDCGSWP*******

****************************************LFHRRK*****************************PLFPLPLVLFPGAILPLQIFEFRYRIMMHTLLQTDLRFGVIYSDAVSGTSEVGCVGEIVKHECLVDDRFFLICKGQERFRVTSVVRTKPYLVAEVAWLEDRPSGEEDLDALANDVETYMKDVIRLSNRLNGKPEKEVVDLRRNLFPTPFSFFVGSTFEGAPREQQALLELEDTAARLKREKETLRNTLNY****************CIFFHYPLGCSENCLLPAN**************DCGSW********

MALPQLIHHHPPSTSSLPSLNPNTMLNLKSYRLLSKSSSTLFHRRKKPNYLRCSA***************DVVELPLFPLPLVLFPGAILPLQIFEFRYRIMMHTLLQTDLRFGVIYSDAVSGTSEVGCVGEIVKHECLVDDRFFLICKGQERFRVTSVVRTKPYLVAEVAWLEDRPSGEEDLDALANDVETYMKDVIRLSNRLNGKPEKEVVDLRRNLFPTPFSFFVGSTFEGAPREQQALLELEDTAARLKREKETLRNTLNYLTAASAVKDVFPSSRWCIFFHYPLGCSENCLLPANVFEVSELGTPARFSDCGSW********

******************SLNPNTMLNLKSYRLLSKSSSTLFHRRKKPNYLRCSASSFSEKHHTNSPKSDDVVELPLFPLPLVLFPGAILPLQIFEFRYRIMMHTLLQTDLRFGVIYSDAVSGTSEVGCVGEIVKHECLVDDRFFLICKGQERFRVTSVVRTKPYLVAEVAWLEDRPSGEEDLDALANDVETYMKDVIRLSNRLNGKPEKEVVDLRRNLFPTPFSFFVGSTFEGAPREQQALLELEDTAARLKREKETLRNTLNYLTAASAVKDVFPSSRWCIFFHYPLGCSENCLLPANVFEVSELGTPARFSDCGSWPVSY****

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx

MALPQLIHHHPPSTSSLPSLNPNTMLNLKSYRLLSKSSSTLFHRRKKPNYLRCSASSFSEKHHTNSPKSDDVVELPLFPLPLVLFPGAILPLQIFEFRYRIMMHTLLQTDLRFGVIYSDAVSGTSEVGCVGEIVKHECLVDDRFFLICKGQERFRVTSVVRTKPYLVAEVAWLEDRPSGEEDxxxxxxxxxxxxxxxxxxxxxLNGKPEKEVVDLRRNLFPTPFSFFVGSTFEGxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxSAVKDVFPSSRWCIFFHYPLGCSENCLLPANVFEVSELGTPARFSDCGSWPVSYPENN

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		327	2.2.26 [Sep-21-2011]
P36774		827	Lon protease 2 OS=Myxococ	yes	no	0.559	0.221	0.282	9e-12
Q2IIK1		843	Lon protease OS=Anaeromyx	yes	no	0.581	0.225	0.258	3e-09
Q8HXH0		718	LON peptidase N-terminal	N/A	no	0.339	0.154	0.327	3e-09
Q496Y0		759	LON peptidase N-terminal	yes	no	0.339	0.146	0.327	3e-09
A8ZX50		817	Lon protease OS=Desulfoco	yes	no	0.599	0.239	0.235	2e-08
Q11QT1		813	Lon protease OS=Cytophaga	yes	no	0.532	0.214	0.224	2e-08
Q9D4H7		753	LON peptidase N-terminal	no	no	0.339	0.147	0.309	7e-08
Q1L5Z9		754	LON peptidase N-terminal	no	no	0.308	0.133	0.349	1e-07
Q17RB8		773	LON peptidase N-terminal	no	no	0.327	0.138	0.321	3e-07
B3ERM8		827	Lon protease OS=Amoebophi	yes	no	0.498	0.197	0.243	8e-07

>sp\|P36774\|LON2_MYXXA Lon protease 2 OS=Myxococcus xanthus GN=lon2 PE=1 SV=3	Back alignment and function desciption

 Score = 71.2 bits (173), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 57/202 (28%), Positives = 98/202 (48%), Gaps = 19/202 (9%)

Query: 75  LPLFPL-PLVLFPGAILPLQIFEFRYRIMMHTLLQTDLRFGVIYSDAVS----GTSE--- 126
           LP+ PL   V FPG +LPL +   +   ++   ++ D   GV+          G ++   
Sbjct: 33  LPILPLRNSVFFPGGVLPLAVGRQKTIALIKDAVRDDQVIGVVTQRRAEEEDPGAADLYT 92

Query: 127 VGCVGEIVKHECLVDDRFFLICKGQERFRVTSVVRTKPYLVAEVAWLEDRPSGEE-DLDA 185
           +G V  IVK   + +D + L+ +G  RFRV  +V+  PYL A V  +ED+ S E  +++A
Sbjct: 93  MGTVARIVKLLKMGEDNYSLVVQGLARFRVVELVQEAPYLKARVDAVEDKTSSENVEVEA 152

Query: 186 LANDVETYMKDVIRLSNRLNGKPEKEVVDLRRNLFPTPFSFFVGSTFEGAPREQQALLEL 245
           L  +++   ++VI L   L     + V  +     P   +  + +  +    E+QA+LE 
Sbjct: 153 LGINLKKLAREVIELMPELPAAATELVESI---THPGHLADLIAANVDVPIEEKQAVLET 209

Query: 246 EDTAARLK-------REKETLR 260
            D  AR+K       R++E L+
Sbjct: 210 VDLKARMKLVLELLNRKREILK 231

ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner.
Myxococcus xanthus (taxid: 34)
EC: 3EC: .EC: 4EC: .EC: 2EC: 1EC: .EC: 5EC: 3

>sp\|Q2IIK1\|LON_ANADE Lon protease OS=Anaeromyxobacter dehalogenans (strain 2CP-C) GN=lon PE=3 SV=1	Back alignment and function description

>sp\|Q8HXH0\|LONF3_MACFA LON peptidase N-terminal domain and RING finger protein 3 OS=Macaca fascicularis GN=LONRF3 PE=2 SV=1	Back alignment and function description

>sp\|Q496Y0\|LONF3_HUMAN LON peptidase N-terminal domain and RING finger protein 3 OS=Homo sapiens GN=LONRF3 PE=1 SV=1	Back alignment and function description

>sp\|A8ZX50\|LON_DESOH Lon protease OS=Desulfococcus oleovorans (strain DSM 6200 / Hxd3) GN=lon PE=3 SV=1	Back alignment and function description

>sp\|Q11QT1\|LON_CYTH3 Lon protease OS=Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469) GN=lon PE=3 SV=1	Back alignment and function description

>sp\|Q9D4H7\|LONF3_MOUSE LON peptidase N-terminal domain and RING finger protein 3 OS=Mus musculus GN=Lonrf3 PE=2 SV=1	Back alignment and function description

>sp\|Q1L5Z9\|LONF2_HUMAN LON peptidase N-terminal domain and RING finger protein 2 OS=Homo sapiens GN=LONRF2 PE=2 SV=3	Back alignment and function description

>sp\|Q17RB8\|LONF1_HUMAN LON peptidase N-terminal domain and RING finger protein 1 OS=Homo sapiens GN=LONRF1 PE=2 SV=2	Back alignment and function description

>sp\|B3ERM8\|LON_AMOA5 Lon protease OS=Amoebophilus asiaticus (strain 5a2) GN=lon PE=3 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		327
224066101		284	predicted protein [Populus trichocarpa]	0.853	0.982	0.806	1e-116
317106665		278	JHL18I08.2 [Jatropha curcas]	0.840	0.989	0.829	1e-116
255538784		283	ATP-dependent peptidase, putative [Ricin	0.844	0.975	0.792	1e-112
449460225		290	PREDICTED: lon protease 2-like [Cucumis	0.853	0.962	0.802	1e-112
225458145		284	PREDICTED: lon protease 2 [Vitis vinifer	0.831	0.957	0.807	1e-112
356510000		285	PREDICTED: lon protease 2-like [Glycine	0.730	0.838	0.880	1e-110
356518461		283	PREDICTED: lon protease 2-like [Glycine	0.834	0.964	0.810	1e-109
224082926		247	predicted protein [Populus trichocarpa]	0.740	0.979	0.877	1e-109
15222235		278	ATP-dependent protease La domain-contain	0.672	0.791	0.882	1e-101
297839431		276	ATP-dependent protease La domain-contain	0.672	0.797	0.869	1e-100

>gi\|224066101\|ref\|XP_002302010.1\| predicted protein [Populus trichocarpa] gi\|222843736\|gb\|EEE81283.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

 Score =  423 bits (1088), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 229/284 (80%), Positives = 248/284 (87%), Gaps = 5/284 (1%)

Query: 1   MALPQLIHHHPPS----TSSLPSLNPNTMLNLKSYRLLSKSSSTLFHRRKKPNYLRCSAS 56
           MALPQLI  H PS    T++L SLNPN + +L        S      ++++   L+CSAS
Sbjct: 1   MALPQLISTHKPSLKPNTTALSSLNPNNLNSLSKLSSSLDSLLHSGRQKRRAASLKCSAS 60

Query: 57  SFSEKHH-TNSPKSDDVVELPLFPLPLVLFPGAILPLQIFEFRYRIMMHTLLQTDLRFGV 115
           SFSEKHH TN PKSDDVVELPLFPLPLVLFPGAILPLQIFEFRYRIMMHTLL+TDLRFGV
Sbjct: 61  SFSEKHHNTNHPKSDDVVELPLFPLPLVLFPGAILPLQIFEFRYRIMMHTLLRTDLRFGV 120

Query: 116 IYSDAVSGTSEVGCVGEIVKHECLVDDRFFLICKGQERFRVTSVVRTKPYLVAEVAWLED 175
           I+SDAVSGT+EVGCVGEI+KHE LVDDRFFLICKGQERFRVT++VRTKPYLVAEV WLED
Sbjct: 121 IFSDAVSGTAEVGCVGEIIKHERLVDDRFFLICKGQERFRVTNIVRTKPYLVAEVTWLED 180

Query: 176 RPSGEEDLDALANDVETYMKDVIRLSNRLNGKPEKEVVDLRRNLFPTPFSFFVGSTFEGA 235
           RPSGEED+DALA +VET+MKDVIRLSNRLNGKPEKE  DLRRNLFPTPFSFFVGSTFEGA
Sbjct: 181 RPSGEEDVDALATEVETHMKDVIRLSNRLNGKPEKEAQDLRRNLFPTPFSFFVGSTFEGA 240

Query: 236 PREQQALLELEDTAARLKREKETLRNTLNYLTAASAVKDVFPSS 279
           PREQQALLELEDTA RLKREKETLRNTLNYL+AASAVKD FPSS
Sbjct: 241 PREQQALLELEDTATRLKREKETLRNTLNYLSAASAVKDAFPSS 284

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|317106665\|dbj\|BAJ53168.1\| JHL18I08.2 [Jatropha curcas]	Back alignment and taxonomy information

>gi\|255538784\|ref\|XP_002510457.1\| ATP-dependent peptidase, putative [Ricinus communis] gi\|223551158\|gb\|EEF52644.1\| ATP-dependent peptidase, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|449460225\|ref\|XP_004147846.1\| PREDICTED: lon protease 2-like [Cucumis sativus] gi\|449521473\|ref\|XP_004167754.1\| PREDICTED: lon protease 2-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|225458145\|ref\|XP_002280558.1\| PREDICTED: lon protease 2 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|356510000\|ref\|XP_003523729.1\| PREDICTED: lon protease 2-like [Glycine max]	Back alignment and taxonomy information

>gi\|356518461\|ref\|XP_003527897.1\| PREDICTED: lon protease 2-like [Glycine max]	Back alignment and taxonomy information

>gi\|224082926\|ref\|XP_002306894.1\| predicted protein [Populus trichocarpa] gi\|222856343\|gb\|EEE93890.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi|15222235|ref|NP_177679.1| ATP-dependent protease La domain-containing protein [Arabidopsis thaliana] gi|10120444|gb|AAG13069.1|AC023754_7 Unknown protein [Arabidopsis thaliana] gi|15028233|gb|AAK76613.1| putative protease [Arabidopsis thaliana] gi|21618023|gb|AAM67073.1| protease, putative [Arabidopsis thaliana] gi|23296404|gb|AAN13110.1| putative protease [Arabidopsis thaliana] gi|332197602|gb|AEE35723.1| ATP-dependent protease La domain-containing protein [Arabidopsis thaliana]

Back alignment and taxonomy information

>gi\|297839431\|ref\|XP_002887597.1\| ATP-dependent protease La domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi\|297333438\|gb\|EFH63856.1\| ATP-dependent protease La domain-containing protein [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		327
TAIR\|locus:2018427		278	AT1G75460 [Arabidopsis thalian	0.721	0.848	0.807	5.9e-96
TAIR\|locus:2013144		278	AT1G19740 [Arabidopsis thalian	0.694	0.816	0.786	1.3e-91
TAIR\|locus:2035025		491	AT1G18660 [Arabidopsis thalian	0.486	0.323	0.302	3e-12
UNIPROTKB\|Q9S2T2		246	Q9S2T2 "Putative uncharacteriz	0.418	0.556	0.299	7.5e-10
UNIPROTKB\|I3LGG6		191	I3LGG6 "Uncharacterized protei	0.305	0.523	0.365	8.7e-08
UNIPROTKB\|K7GRY6		203	LONRF3 "Uncharacterized protei	0.281	0.453	0.344	4e-07
UNIPROTKB\|B3KUN7		503	LONRF3 "LON peptidase N-termin	0.281	0.182	0.354	2e-06
UNIPROTKB\|E9PQH4		199	LONRF1 "LON peptidase N-termin	0.281	0.462	0.344	2.2e-06
UNIPROTKB\|H0Y7Q8		525	LONRF3 "LON peptidase N-termin	0.281	0.175	0.354	2.2e-06
UNIPROTKB\|F1P3J6		597	Gga.40071 "Uncharacterized pro	0.293	0.160	0.346	2.7e-06

TAIR\|locus:2018427 AT1G75460 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 954 (340.9 bits), Expect = 5.9e-96, P = 5.9e-96
 Identities = 193/239 (80%), Positives = 207/239 (86%)

Query:    44 RRKKPNY-LRCSASSFSEKHHT-NSPKSDDXXXXXXXXXXXXXXXGAILPLQIFEFRYRI 101
             RR K N   RCS+SSFSEKHH   SPKSDD               GAILPLQIFEFRYRI
Sbjct:    39 RRCKLNSSFRCSSSSFSEKHHNAKSPKSDDIVELPLFPLPLVLFPGAILPLQIFEFRYRI 98

Query:   102 MMHTLLQTDLRFGVIYSDAVSGTS-EVGCVGEIVKHECLVDDRFFLICKGQERFRVTSVV 160
             MMHTLLQ+DLRFGV+YSD+VSG++ EVGCVGE+VKHE LVDDRFFL+CKGQERFRVT+VV
Sbjct:    99 MMHTLLQSDLRFGVVYSDSVSGSAAEVGCVGEVVKHERLVDDRFFLVCKGQERFRVTNVV 158

Query:   161 RTKPYLVAEVAWLEDRPSGEEDLDALANDVETYMKDVIRLSNRLNGKPEKEVVDLRRNLF 220
             RTKPYLV EV WLEDRPSGEE+LD+LAN+VE  MK+VIRLSNRLNGK EKEV DLRRN F
Sbjct:   159 RTKPYLVGEVTWLEDRPSGEENLDSLANEVEVLMKEVIRLSNRLNGKAEKEVQDLRRNQF 218

Query:   221 PTPFSFFVGSTFEGAPREQQALLELEDTAARLKREKETLRNTLNYLTAASAVKDVFPSS 279
             PTPFSFFVGSTFEGAPREQQALLELEDTAARLKRE+ETLRNTLNYLTAASAVKDVFPSS
Sbjct:   219 PTPFSFFVGSTFEGAPREQQALLELEDTAARLKRERETLRNTLNYLTAASAVKDVFPSS 277

GO:0004176 "ATP-dependent peptidase activity" evidence=IEA;ISS

GO:0006508 "proteolysis" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

TAIR\|locus:2013144 AT1G19740 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2035025 AT1G18660 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

UNIPROTKB\|Q9S2T2 Q9S2T2 "Putative uncharacterized protein SCO2057" [Streptomyces coelicolor A3(2) (taxid:100226)]	Back alignment and assigned GO terms

UNIPROTKB\|I3LGG6 I3LGG6 "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

UNIPROTKB\|K7GRY6 LONRF3 "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

UNIPROTKB\|B3KUN7 LONRF3 "LON peptidase N-terminal domain and RING finger protein 3" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|E9PQH4 LONRF1 "LON peptidase N-terminal domain and RING finger protein 1" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|H0Y7Q8 LONRF3 "LON peptidase N-terminal domain and RING finger protein 3" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|F1P3J6 Gga.40071 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		327
pfam02190		191	pfam02190, LON, ATP-dependent protease La (LON) do	4e-38
COG2802		221	COG2802, COG2802, Uncharacterized protein, similar	1e-33
COG0466		782	COG0466, Lon, ATP-dependent Lon protease, bacteria	3e-10
TIGR00763		775	TIGR00763, lon, ATP-dependent protease La	2e-08

>gnl\|CDD\|216923 pfam02190, LON, ATP-dependent protease La (LON) domain	Back alignment and domain information

 Score =  133 bits (337), Expect = 4e-38
 Identities = 66/194 (34%), Positives = 99/194 (51%), Gaps = 13/194 (6%)

Query: 74  ELPLFPLP-LVLFPGAILPLQIFEFRYRIMMHTLLQTDLRFGVIY---SDAVSGTS--EV 127
           ELPL PL  +VLFPG +LPL +FE RY   +   L++D  FG++     D  S     EV
Sbjct: 1   ELPLLPLRNVVLFPGMVLPLHVFEPRYIAAIEEALESDRPFGLVLVSQKDPPSIDDLYEV 60

Query: 128 GCVGEIVKHECLVDDRFFLICKGQERFRVTSVVRTKPYLVAEVAWLEDRPSGEEDLDALA 187
           G +  I++   L D R  ++ +G ERFR+  + + +PYLVAEV  L      EE+L+ L 
Sbjct: 61  GTLARIIQIVKLPDGRLKILVEGLERFRILELEQEEPYLVAEVEDLP-----EEELEELL 115

Query: 188 NDVETYMKDVIRLSNRLNGKPEKEVVDLRRNLF--PTPFSFFVGSTFEGAPREQQALLEL 245
             +E  +K++I     L        + L+ +    P   +  + S    +P E+Q LLE 
Sbjct: 116 EALEALVKELIEKIKELLPLLLPLELLLKIDDIEDPGRLADLIASLLPLSPEEKQELLET 175

Query: 246 EDTAARLKREKETL 259
            D   RL++  E L
Sbjct: 176 LDVKERLEKLLELL 189

This domain has been shown to be part of the PUA superfamily. Length = 191

>gnl\|CDD\|225362 COG2802, COG2802, Uncharacterized protein, similar to the N-terminal domain of Lon protease [General function prediction only]	Back alignment and domain information

>gnl\|CDD\|223542 COG0466, Lon, ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>gnl\|CDD\|233119 TIGR00763, lon, ATP-dependent protease La	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		327
PRK10787		784	DNA-binding ATP-dependent protease La; Provisional	100.0
COG0466		782	Lon ATP-dependent Lon protease, bacterial type [Po	100.0
TIGR00763		775	lon ATP-dependent protease La. This protein is ind	100.0
PF02190		205	LON: ATP-dependent protease La (LON) domain; Inter	99.97
COG2802		221	Uncharacterized protein, similar to the N-terminal	99.94
KOG2004		906	consensus Mitochondrial ATP-dependent protease PIM	99.81
KOG4159		398	consensus Predicted E3 ubiquitin ligase [Posttrans	99.41
smart00464		92	LON Found in ATP-dependent protease La (LON). N-te	99.32
KOG1400		371	consensus Predicted ATP-dependent protease PIL, co	97.93
PRK10865		857	protein disaggregation chaperone; Provisional	80.55

>PRK10787 DNA-binding ATP-dependent protease La; Provisional	Back alignment and domain information

Probab=100.00  E-value=4.9e-41  Score=353.95  Aligned_cols=250  Identities=18%  Similarity=0.292  Sum_probs=221.0

Q ss_pred             CcceeeEeecC-cccCCCceeeEEeCcHHHHHHHHHHHhcCCcEEEEEecC-------CCCcceeeeEEEEEEeeEeCCC
Q 020387           71 DVVELPLFPLP-LVLFPGAILPLQIFEFRYRIMMHTLLQTDLRFGVIYSDA-------VSGTSEVGCVGEIVKHECLVDD  142 (327)
Q Consensus        71 ~~~~LPllpLr-~VlFPg~~~pL~V~ep~~~~av~~al~~~~~igvv~~~~-------~~~ly~vGtla~I~~v~~l~dG  142 (327)
                      ++..+|+||++ +|+|||+.+||+||+++|++||++|+++++.||+|++++       .+++|+|||+|+|+++.+++||
T Consensus         7 ~~~~LPLfPLr~~VLFPg~~lPL~Ife~R~i~~Ve~al~~~~~~gvv~~k~~~~~~p~~~dLy~VGtla~I~~~~~l~DG   86 (784)
T PRK10787          7 ERIEIPVLPLRDVVVYPHMVIPLFVGREKSIRCLEAAMDHDKKIMLVAQKEASTDEPGVNDLFTVGTVASILQMLKLPDG   86 (784)
T ss_pred             CCceEEEEECCCceeCCCceeeeecCCHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcccccCccEEEEEEEeeECCCC
Confidence            34589999999 999999999999999999999999999999999999854       1478999999999999999999


Q ss_pred             eEEEEEEeeeeEEEEEEeecCCeEEEEEEEecCCCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHhhhhCCCCc
Q 020387          143 RFFLICKGQERFRVTSVVRTKPYLVAEVAWLEDRPSGEEDLDALANDVETYMKDVIRLSNRLNGKPEKEVVDLRRNLFPT  222 (327)
Q Consensus       143 ~~~Ilv~G~~R~kI~~~~~~~p~l~A~Ve~l~d~~~~~~E~~aL~~~l~~~~~~l~~l~~~l~~~~~~~~~~l~~~~dp~  222 (327)
                      ++.|+++|++||+|.++.+.+||+.|+|++++++..++.+.+++.+.+.+.+.++..+.....   .+.+..+...+||.
T Consensus        87 ~~~Ilv~Gl~RfrI~~~~~~~py~~A~Ve~l~~~~~~~~e~~al~~~ll~~~~~~~~l~~~~~---~e~~~~~~~~ddp~  163 (784)
T PRK10787         87 TVKVLVEGLQRARISALSDNGEHFSAKAEYLESPTIDEREQEVLVRTAISQFEGYIKLNKKIP---PEVLTSLNSIDDPA  163 (784)
T ss_pred             eEEEEEEEEEEEEEEEEEcCCCCEEEEEEEecCCCCCchHHHHHHHHHHHHHHHHHHhcccCC---HHHHhhhhccccHH
Confidence            999999999999999998899999999999988654445667888889998888887654332   22234556778999


Q ss_pred             hHHHHHhhcCCCCHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHH----hhhccccchhhHhhCCC-------Cc
Q 020387          223 PFSFFVGSTFEGAPREQQALLELEDTAARLKREKETLRNTLNYLTAASAV----KDVFPSSRWCIFFHYPL-------GC  291 (327)
Q Consensus       223 ~Lad~va~~l~l~~eeKqeLLE~~dv~eRL~~ll~lL~~eie~l~l~~~I----k~~~~k~Qre~~l~~~~-------~~  291 (327)
                      .++|++|+.++++.++||+|||+.|+.+|+++++.+|+++++.++++++|    +++|+|+|||||||++.       |-
T Consensus       164 ~Lad~iA~~Lpl~~~eKQ~LLE~~d~~eRLe~Ll~lL~~Eleil~l~~~I~~~v~~~~~k~q~e~~lreq~~~i~~elg~  243 (784)
T PRK10787        164 RLADTIAAHMPLKLADKQSVLEMSDVNERLEYLMAMMESEIDLLQVEKRIRNRVKKQMEKSQREYYLNEQMKAIQKELGE  243 (784)
T ss_pred             HHHHHHHHHCCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhhhhhhcccccC
Confidence            99999999999999999999999999999999999999999999999999    77999999999999922       21


Q ss_pred             --------------ccccCCCccccc--ccccCCCCcccC---CCCCcccC
Q 020387          292 --------------SENCLLPANVFE--VSELGTPARFSD---CGSWPVSY  323 (327)
Q Consensus       292 --------------~~~~~~~~~~~~--~~~~~~~~~~~~---~~~~~~~~  323 (327)
                                    ++.+.+|++|.+  .+|+.++++++.   |.+.+|||
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~e~~~~~~y  294 (784)
T PRK10787        244 MDDAPDENEALKRKIDAAKMPKEAKEKAEAELQKLKMMSPMSAEATVVRGY  294 (784)
T ss_pred             CCcchhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCCCCchHHHHHHH
Confidence                          788999999999  999999999777   88888887

>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>TIGR00763 lon ATP-dependent protease La	Back alignment and domain information

>PF02190 LON: ATP-dependent protease La (LON) domain; InterPro: IPR003111 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families	Back alignment and domain information

>COG2802 Uncharacterized protein, similar to the N-terminal domain of Lon protease [General function prediction only]	Back alignment and domain information

>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>smart00464 LON Found in ATP-dependent protease La (LON)	Back alignment and domain information

>KOG1400 consensus Predicted ATP-dependent protease PIL, contains LON domain [General function prediction only]	Back alignment and domain information

>PRK10865 protein disaggregation chaperone; Provisional	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		327
1zbo_A		210	Hypothetical protein BPP1347; alpha-beta protein,	1e-42
3ljc_A		252	ATP-dependent protease LA; LON N-domain, allosteri	9e-09
3m65_A		209	ATP-dependent protease LA 1; coiled-coil, ATP-bind	2e-07
2ane_A		125	ATP-dependent protease LA; LONN119, LON protease,	3e-04

>1zbo_A Hypothetical protein BPP1347; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.60A {Bordetella parapertussis} SCOP: b.122.1.10 Length = 210	Back alignment and structure

 Score =  145 bits (368), Expect = 1e-42
 Identities = 42/214 (19%), Positives = 67/214 (31%), Gaps = 34/214 (15%)

Query: 74  ELPLFPLPLVLFPGAILPLQIFEFRYRIMMHTLLQTDLRFGVI---------YSDAVSGT 124
           E+PLFPL   LFP  +L L++FE RY  M+   +     FGV+           D     
Sbjct: 3   EIPLFPLSNALFPAGVLRLRVFEIRYLDMVRRCIADGSEFGVVVLEQGTEVRRPDGREVL 62

Query: 125 SEVGCVGEIVKHECLVDDRFFLICKGQERFRVTSVVRT-KPYLVAEVAWLEDRPSGEEDL 183
           +  G +  I   E  +     L C G  RFR+ +  +        +   + D      ++
Sbjct: 63  ARAGTMARIDHWEAPMPALLELACTGTGRFRLHACTQGKYGLWTGQAEPVPDDA--PLEV 120

Query: 184 DALANDVETYMKDVIRLSNRLNGKPEKEVVDLRRNLFPT-----------PFSFFVGSTF 232
                   + +  +I    R    P    +     L                        
Sbjct: 121 PPELARSASALGRLIARLQREGVPPHIMPMAAPFRLDDCGWVADRWAEMLSLP------- 173

Query: 233 EGAPREQQALLELEDTAARLKREKETLRNTLNYL 266
              P ++  LL L     RL+     L    + L
Sbjct: 174 ---PADKARLLLL-PPLDRLREIDAVLAADGHAL 203

PyMOL of 1zbo

>3ljc_A ATP-dependent protease LA; LON N-domain, allosteric enzyme, ATP-binding, DNA-binding, H nucleotide-binding, serine protease, stress respo; 2.60A {Escherichia coli} Length = 252	Back alignment and structure

>3m65_A ATP-dependent protease LA 1; coiled-coil, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; 2.60A {Bacillus subtilis} Length = 209	Back alignment and structure

>2ane_A ATP-dependent protease LA; LONN119, LON protease, hydrolase; 2.03A {Escherichia coli} SCOP: b.122.1.10 Length = 125	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		327
3ljc_A		252	ATP-dependent protease LA; LON N-domain, allosteri	100.0
3m65_A		209	ATP-dependent protease LA 1; coiled-coil, ATP-bind	100.0
1zbo_A		210	Hypothetical protein BPP1347; alpha-beta protein,	100.0
2ane_A		125	ATP-dependent protease LA; LONN119, LON protease,	99.93

>3ljc_A ATP-dependent protease LA; LON N-domain, allosteric enzyme, ATP-binding, DNA-binding, H nucleotide-binding, serine protease, stress respo; 2.60A {Escherichia coli}	Back alignment and structure

Probab=100.00  E-value=7.1e-46  Score=343.11  Aligned_cols=221  Identities=17%  Similarity=0.316  Sum_probs=196.9

Q ss_pred             CCCCCCcceeeEeecC-cccCCCceeeEEeCcHHHHHHHHHHHhcCCcEEEEEecC-------CCCcceeeeEEEEEEee
Q 020387           66 SPKSDDVVELPLFPLP-LVLFPGAILPLQIFEFRYRIMMHTLLQTDLRFGVIYSDA-------VSGTSEVGCVGEIVKHE  137 (327)
Q Consensus        66 ~~~~~~~~~LPllpLr-~VlFPg~~~pL~V~ep~~~~av~~al~~~~~igvv~~~~-------~~~ly~vGtla~I~~v~  137 (327)
                      .+|.-.+.++||||++ +|+|||+++||+||+++|++||++|+++++.||+|++++       .+++|+|||+|+|.++.
T Consensus         9 ~~~~~~~~~lPl~PLr~~VlfPg~~~pL~I~~~r~~~~v~~a~~~~~~~~lv~q~~~~~~~p~~~~l~~vGt~a~I~~~~   88 (252)
T 3ljc_A            9 NPERSERIEIPVLPLRDVVVYPHMVIPLFVGREKSIRCLEAAMDHDKKIMLVAQKEASTDEPGVNDLFTVGTVASILQML   88 (252)
T ss_dssp             -----CCCCCEEEEESSCCCCBTCEEEEEECCTTTHHHHHHHHTTTTEEEEEEBCSSCCSSCCSSSBCSEEEEEEECCCB
T ss_pred             ChhhcCCCceeEEEeCCccccCCcceEEEECCHHHHHHHHHHHhcCCEEEEEEecCCCcCCCCccchhheeEEEEEEEEE
Confidence            3444456679999999 999999999999999999999999999998999999864       25799999999999999


Q ss_pred             EeCCCeEEEEEEeeeeEEEEEEeecCCeEEEEEEEecCCCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHhhhh
Q 020387          138 CLVDDRFFLICKGQERFRVTSVVRTKPYLVAEVAWLEDRPSGEEDLDALANDVETYMKDVIRLSNRLNGKPEKEVVDLRR  217 (327)
Q Consensus       138 ~l~dG~~~Ilv~G~~R~kI~~~~~~~p~l~A~Ve~l~d~~~~~~E~~aL~~~l~~~~~~l~~l~~~l~~~~~~~~~~l~~  217 (327)
                      +++||+++|+++|.+||+|.++.+.+||+.|+|++++++...+.+.+++.+.+++.|.++..++..++   .+....+..
T Consensus        89 ~lpdG~~~v~v~G~~R~rI~~~~~~~~~~~a~ve~l~d~~~~~~e~~al~~~l~~~~~~~~~l~~~~~---~e~~~~~~~  165 (252)
T 3ljc_A           89 KLPDGTVKVLVEGLQRARISALSDNGEHFSAKAEYLESPTIDEREQEVLVRTAISQFEGYIKLNKKIP---PEVLTSLNS  165 (252)
T ss_dssp             CCTTSCEEEEEEEEEEEECSEEEEETTEEEEECCCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHCSSC---HHHHHHTTS
T ss_pred             ECCCCeEEEEEEEEEEEEEEEEEcCCCcEEEEEEeecCCCCCChHHHHHHHHHHHHHHHHHHhcccCC---HHHHHHHHc
Confidence            99999999999999999999999999999999999988765556788999999999999988665443   223356777


Q ss_pred             CCCCchHHHHHhhcCCCCHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHH----hhhccccchhhHhhCCC
Q 020387          218 NLFPTPFSFFVGSTFEGAPREQQALLELEDTAARLKREKETLRNTLNYLTAASAV----KDVFPSSRWCIFFHYPL  289 (327)
Q Consensus       218 ~~dp~~Lad~va~~l~l~~eeKqeLLE~~dv~eRL~~ll~lL~~eie~l~l~~~I----k~~~~k~Qre~~l~~~~  289 (327)
                      .+||+.|+|++|++++++.++||+|||+.|+.+|+++++++|.+++++++++++|    +++|+|+|||||||++.
T Consensus       166 ~~dp~~Lad~ia~~l~l~~~eKQ~LLe~~d~~~Rl~~l~~lL~~e~e~~~l~~~I~~~v~~~~~k~Qrey~LrEQl  241 (252)
T 3ljc_A          166 IDDPARLADTIAAHMPLKLADKQSVLEMSDVNERLEYLMAMMESEIDLLQVEKRIRNRVKKQMEKSQREYYLNEQM  241 (252)
T ss_dssp             CCCHHHHHHHHHHTSCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHhCCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8999999999999999999999999999999999999999999999999999999    77999999999999854

PyMOL of 3ljc

>3m65_A ATP-dependent protease LA 1; coiled-coil, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; 2.60A {Bacillus subtilis}	Back alignment and structure

>1zbo_A Hypothetical protein BPP1347; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.60A {Bordetella parapertussis} SCOP: b.122.1.10	Back alignment and structure

>2ane_A ATP-dependent protease LA; LONN119, LON protease, hydrolase; 2.03A {Escherichia coli} SCOP: b.122.1.10	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		327
d1zboa1		197	b.122.1.10 (A:2-198) Hypothetical protein BPP1347	1e-24
d2anea1		110	b.122.1.10 (A:8-117) ATP-dependent protease La (Lo	2e-21

>d1zboa1 b.122.1.10 (A:2-198) Hypothetical protein BPP1347 {Bordetella parapertussis [TaxId: 519]} Length = 197	Back information, alignment and structure


class: All beta proteins
fold: PUA domain-like
superfamily: PUA domain-like
family: LON domain-like
domain: Hypothetical protein BPP1347
species: Bordetella parapertussis [TaxId: 519]

 Score = 96.5 bits (239), Expect = 1e-24
 Identities = 45/195 (23%), Positives = 66/195 (33%), Gaps = 10/195 (5%)

Query: 74  ELPLFPLPLVLFPGAILPLQIFEFRYRIMMHTLLQTDLRFGVI---------YSDAVSGT 124
           E+PLFPL   LFP  +L L++FE RY  M+   +     FGV+           D     
Sbjct: 2   EIPLFPLSNALFPAGVLRLRVFEIRYLDMVRRCIADGSEFGVVVLEQGTEVRRPDGREVL 61

Query: 125 SEVGCVGEIVKHECLVDDRFFLICKGQERFRVTSVVRTKPYLVAEVAWLEDRPSGEEDLD 184
           +  G +  I   E  +     L C G  RFR+ +  + K  L    A      +  E   
Sbjct: 62  ARAGTMARIDHWEAPMPALLELACTGTGRFRLHACTQGKYGLWTGQAEPVPDDAPLEVPP 121

Query: 185 ALANDVETYMKDVIRLSNRLNGKPEKEVVDLRRNLFPTPFSFFVGSTFEGAPREQQALLE 244
            LA       + + RL           +    R       +          P ++  LL 
Sbjct: 122 ELARSASALGRLIARLQREGVPPHIMPMAAPFRLDDCGWVADRWAEMLSLPPADKARLLL 181

Query: 245 LEDTAARLKREKETL 259
           L     RL+     L
Sbjct: 182 L-PPLDRLREIDAVL 195

PyMOL of d1zboa1

>d2anea1 b.122.1.10 (A:8-117) ATP-dependent protease La (Lon), N-terminal domain {Escherichia coli [TaxId: 562]} Length = 110	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		327
d1zboa1		197	Hypothetical protein BPP1347 {Bordetella parapertu	100.0
d2anea1		110	ATP-dependent protease La (Lon), N-terminal domain	99.91

>d1zboa1 b.122.1.10 (A:2-198) Hypothetical protein BPP1347 {Bordetella parapertussis [TaxId: 519]}	Back information, alignment and structure

class: All beta proteins
fold: PUA domain-like
superfamily: PUA domain-like
family: LON domain-like
domain: Hypothetical protein BPP1347
species: Bordetella parapertussis [TaxId: 519]

Probab=100.00  E-value=2.4e-33  Score=244.44  Aligned_cols=183  Identities=22%  Similarity=0.281  Sum_probs=153.0

Q ss_pred             eeeEeecCcccCCCceeeEEeCcHHHHHHHHHHHhcCCcEEEEEecC---------CCCcceeeeEEEEEEeeEeCCCeE
Q 020387           74 ELPLFPLPLVLFPGAILPLQIFEFRYRIMMHTLLQTDLRFGVIYSDA---------VSGTSEVGCVGEIVKHECLVDDRF  144 (327)
Q Consensus        74 ~LPllpLr~VlFPg~~~pL~V~ep~~~~av~~al~~~~~igvv~~~~---------~~~ly~vGtla~I~~v~~l~dG~~  144 (327)
                      ++|||||++|+|||+++||+||+++|++|+++|+++++.|++++.+.         .+++|+|||+|+|.++.+++||++
T Consensus         2 elPlfpL~~VlfP~~~~PL~Ife~ry~~~i~~~l~~~~~~~~v~~~~~~~~~~~~~~~~l~~vGt~~~I~~~~~~~dG~~   81 (197)
T d1zboa1           2 EIPLFPLSNALFPAGVLRLRVFEIRYLDMVRRCIADGSEFGVVVLEQGTEVRRPDGREVLARAGTMARIDHWEAPMPALL   81 (197)
T ss_dssp             EEEEEEESSCCCTTBEEEEEECSTTTHHHHHHHHHTTCCEEEEEESSSCSSCCSSCCCCEEEEEEEEEEEEEECSSTTCE
T ss_pred             CCCEEeCCCccCCCcceeeEeCchHHHHHHHHHHhcCCCeeeeccccccccccccccccccceeEEEEEeeecccCCCce
Confidence            69999999899999999999999999999999999999888877532         256899999999999999999999


Q ss_pred             EEEEEeeeeEEEEEEee-cCCeEEEEEEEecCCCC--CchhHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHhhhhCCCC
Q 020387          145 FLICKGQERFRVTSVVR-TKPYLVAEVAWLEDRPS--GEEDLDALANDVETYMKDVIRLSNRLNGKPEKEVVDLRRNLFP  221 (327)
Q Consensus       145 ~Ilv~G~~R~kI~~~~~-~~p~l~A~Ve~l~d~~~--~~~E~~aL~~~l~~~~~~l~~l~~~l~~~~~~~~~~l~~~~dp  221 (327)
                      +|+++|.+||+|.++.+ .++|+.|.+++.+++..  ...+..++.+.+.+.+.++........   ..........++|
T Consensus        82 ~i~v~G~~R~~i~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~  158 (197)
T d1zboa1          82 ELACTGTGRFRLHACTQGKYGLWTGQAEPVPDDAPLEVPPELARSASALGRLIARLQREGVPPH---IMPMAAPFRLDDC  158 (197)
T ss_dssp             EEEEEEEEEEEEEEEEECGGGCEEEEEEEECCCCCCCCCGGGHHHHHHHHHHHHHHHHTTCCTT---TCSBCSCCCTTCH
T ss_pred             eEeeeeccceeeeeeeeccCceEEEEEEeccccCCccCcHHHHHHHHHHHHHHHHHHHhcCCch---hhhhhhhhccCCH
Confidence            99999999999999886 56899999999987654  345677888888888887765432211   1111233456799


Q ss_pred             chHHHHHhhcCCCCHHHHHHhhccCCHHHHHHHHHHHHH
Q 020387          222 TPFSFFVGSTFEGAPREQQALLELEDTAARLKREKETLR  260 (327)
Q Consensus       222 ~~Lad~va~~l~l~~eeKqeLLE~~dv~eRL~~ll~lL~  260 (327)
                      ..++|++|++++++.++||+|||+ |..+||+++.++|.
T Consensus       159 ~~l~~~la~~l~l~~~~kQ~lLE~-~~~~RL~~l~~~L~  196 (197)
T d1zboa1         159 GWVADRWAEMLSLPPADKARLLLL-PPLDRLREIDAVLA  196 (197)
T ss_dssp             HHHHHHHHHHSCCCHHHHHHHHHS-CHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHCC-CHHHHHHHHHHHHc
Confidence            999999999999999999999997 55689999998875

PyMOL of d1zboa1

>d2anea1 b.122.1.10 (A:8-117) ATP-dependent protease La (Lon), N-terminal domain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure