Citrus Sinensis ID: 020423
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 326 | 2.2.26 [Sep-21-2011] | |||||||
| Q8Z1T1 | 332 | tRNA-dihydrouridine synth | N/A | no | 0.760 | 0.746 | 0.498 | 3e-64 | |
| Q8ZKH4 | 332 | tRNA-dihydrouridine synth | yes | no | 0.760 | 0.746 | 0.498 | 4e-64 | |
| P32695 | 330 | tRNA-dihydrouridine synth | N/A | no | 0.748 | 0.739 | 0.5 | 1e-63 | |
| Q8X5V6 | 330 | tRNA-dihydrouridine synth | N/A | no | 0.748 | 0.739 | 0.5 | 1e-63 | |
| Q7UBC5 | 330 | tRNA-dihydrouridine synth | yes | no | 0.748 | 0.739 | 0.5 | 1e-63 | |
| Q8FB30 | 331 | tRNA-dihydrouridine synth | yes | no | 0.748 | 0.737 | 0.496 | 2e-63 | |
| Q87L85 | 326 | tRNA-dihydrouridine synth | yes | no | 0.739 | 0.739 | 0.477 | 2e-61 | |
| Q9KUX9 | 327 | tRNA-dihydrouridine synth | yes | no | 0.736 | 0.733 | 0.487 | 2e-61 | |
| Q8CWK7 | 326 | tRNA-dihydrouridine synth | yes | no | 0.763 | 0.763 | 0.462 | 3e-61 | |
| Q8EAJ0 | 335 | tRNA-dihydrouridine synth | yes | no | 0.760 | 0.740 | 0.462 | 1e-60 |
| >sp|Q8Z1T1|DUSA_SALTI tRNA-dihydrouridine synthase A OS=Salmonella typhi GN=dusA PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 245 bits (625), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 127/255 (49%), Positives = 165/255 (64%), Gaps = 7/255 (2%)
Query: 67 LPPW-FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQH 125
LP + FS+APM+DWTD H R RL+S+ LYTEM+ II+ +G+ +LA+S E+H
Sbjct: 10 LPAYRFSIAPMLDWTDRHCRYFLRLLSRQTLLYTEMVTTGAIIHGKGD---YLAYSEEEH 66
Query: 126 PIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEA 185
P+ LQ+GGS+ LA +LA A YDEINLN GCPS +V +G FG LM + + V +
Sbjct: 67 PVALQLGGSDPAQLAHCAKLAEARGYDEINLNVGCPSDRVQ-NGMFGACLMGNAQLVADC 125
Query: 186 MSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPA 245
+ + ++PV+VK RIG+DD DSY LCDFI VS FIIH+RKA L+G+SP
Sbjct: 126 VKAMRDVVSIPVTVKTRIGIDDQDSYAFLCDFINTVSGQGECEMFIIHARKAWLSGLSPK 185
Query: 246 ENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 305
ENR IPPL Y Y L RDFP LT ++NGGI +++E LR VMVGR AYQNP
Sbjct: 186 ENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKEHLRH-MDGVMVGREAYQNPG- 243
Query: 306 TLGHVDTAIYGAPSS 320
L VD I+GA ++
Sbjct: 244 ILAAVDREIFGADTT 258
|
Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs. Salmonella typhi (taxid: 90370) EC: 1EC: .EC: -EC: .EC: -EC: .EC: - |
| >sp|Q8ZKH4|DUSA_SALTY tRNA-dihydrouridine synthase A OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=dusA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 245 bits (625), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 127/255 (49%), Positives = 165/255 (64%), Gaps = 7/255 (2%)
Query: 67 LPPW-FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQH 125
LP + FS+APM+DWTD H R RL+S+ LYTEM+ II+ +G+ +LA+S E+H
Sbjct: 10 LPAYRFSIAPMLDWTDRHCRYFLRLLSRQTQLYTEMVTTGAIIHGKGD---YLAYSEEEH 66
Query: 126 PIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEA 185
P+ LQ+GGS+ LA +LA A YDEINLN GCPS +V +G FG LM + + V +
Sbjct: 67 PVALQLGGSDPAQLAHCAKLAEARGYDEINLNVGCPSDRVQ-NGMFGACLMGNAQLVADC 125
Query: 186 MSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPA 245
+ + ++PV+VK RIG+DD DSY LCDFI VS FIIH+RKA L+G+SP
Sbjct: 126 VKAMRDVVSIPVTVKTRIGIDDQDSYAFLCDFIDTVSGQGECEMFIIHARKAWLSGLSPK 185
Query: 246 ENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 305
ENR IPPL Y Y L RDFP LT ++NGGI +++E LR VMVGR AYQNP
Sbjct: 186 ENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKEHLRH-MDGVMVGREAYQNPG- 243
Query: 306 TLGHVDTAIYGAPSS 320
L VD I+GA ++
Sbjct: 244 ILAAVDREIFGADTT 258
|
Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs. Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) (taxid: 99287) EC: 1 EC: . EC: - EC: . EC: - EC: . EC: - |
| >sp|P32695|DUSA_ECOLI tRNA-dihydrouridine synthase A OS=Escherichia coli (strain K12) GN=dusA PE=3 SV=3 | Back alignment and function description |
|---|
Score = 243 bits (621), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 125/250 (50%), Positives = 164/250 (65%), Gaps = 6/250 (2%)
Query: 71 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 130
FSVAPM+DWTD H R RL+S++ LYTEM+ II+ +G+ +LA+S E+HP+ LQ
Sbjct: 13 FSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGD---YLAYSEEEHPVALQ 69
Query: 131 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 190
+GGS+ LA+ +LA A YDEINLN GCPS +V +G FG LM + + V + + +
Sbjct: 70 LGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMR 128
Query: 191 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 250
++PV+VK RIG+DD DSY LCDFI VS FIIH+RKA L+G+SP ENR I
Sbjct: 129 DVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREI 188
Query: 251 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 310
PPL Y Y L RDFP LT ++NGGI +++E A L+ VMVGR AYQNP L V
Sbjct: 189 PPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQH-MDGVMVGREAYQNPG-ILAAV 246
Query: 311 DTAIYGAPSS 320
D I+G+ +
Sbjct: 247 DREIFGSSDT 256
|
Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs. Escherichia coli (strain K12) (taxid: 83333) EC: 1 EC: . EC: - EC: . EC: - EC: . EC: - |
| >sp|Q8X5V6|DUSA_ECO57 tRNA-dihydrouridine synthase A OS=Escherichia coli O157:H7 GN=dusA PE=3 SV=2 | Back alignment and function description |
|---|
Score = 243 bits (621), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 125/250 (50%), Positives = 164/250 (65%), Gaps = 6/250 (2%)
Query: 71 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 130
FSVAPM+DWTD H R RL+S++ LYTEM+ II+ +G+ +LA+S E+HP+ LQ
Sbjct: 13 FSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGD---YLAYSEEEHPVALQ 69
Query: 131 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 190
+GGS+ LA+ +LA A YDEINLN GCPS +V +G FG LM + + V + + +
Sbjct: 70 LGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMR 128
Query: 191 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 250
++PV+VK RIG+DD DSY LCDFI VS FIIH+RKA L+G+SP ENR I
Sbjct: 129 DVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREI 188
Query: 251 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 310
PPL Y Y L RDFP LT ++NGGI +++E A L+ VMVGR AYQNP L V
Sbjct: 189 PPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQH-MDGVMVGREAYQNPG-ILAAV 246
Query: 311 DTAIYGAPSS 320
D I+G+ +
Sbjct: 247 DREIFGSSDT 256
|
Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs. Escherichia coli O157:H7 (taxid: 83334) EC: 1 EC: . EC: - EC: . EC: - EC: . EC: - |
| >sp|Q7UBC5|DUSA_SHIFL tRNA-dihydrouridine synthase A OS=Shigella flexneri GN=dusA PE=3 SV=2 | Back alignment and function description |
|---|
Score = 243 bits (620), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 125/250 (50%), Positives = 164/250 (65%), Gaps = 6/250 (2%)
Query: 71 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 130
FSVAPM+DWTD H R RL+S++ LYTEM+ II+ +G+ +LA+S E+HP+ LQ
Sbjct: 13 FSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGD---YLAYSEEEHPVALQ 69
Query: 131 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 190
+GGS+ LA+ +LA A YDEINLN GCPS +V +G FG LM + + V + + +
Sbjct: 70 LGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMR 128
Query: 191 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 250
++PV+VK RIG+DD DSY LCDFI VS FIIH+RKA L+G+SP ENR I
Sbjct: 129 DVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREI 188
Query: 251 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 310
PPL Y Y L RDFP LT ++NGGI +++E A L+ VMVGR AYQNP L V
Sbjct: 189 PPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQH-MDGVMVGREAYQNPG-ILAAV 246
Query: 311 DTAIYGAPSS 320
D I+G+ +
Sbjct: 247 DREIFGSSDT 256
|
Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs. Shigella flexneri (taxid: 623) EC: 1 EC: . EC: - EC: . EC: - EC: . EC: - |
| >sp|Q8FB30|DUSA_ECOL6 tRNA-dihydrouridine synthase A OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=dusA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 243 bits (619), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 124/250 (49%), Positives = 164/250 (65%), Gaps = 6/250 (2%)
Query: 71 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 130
FS+APM+DWTD H R RL+S++ LYTEM+ II+ +G+ +LA+S E+HP+ LQ
Sbjct: 14 FSIAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGD---YLAYSEEEHPVALQ 70
Query: 131 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 190
+GGS+ LA+ +LA A YDEINLN GCPS +V +G FG LM + + V + + +
Sbjct: 71 LGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMR 129
Query: 191 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 250
++PV+VK RIG+DD DSY LCDFI VS FIIH+RKA L+G+SP ENR I
Sbjct: 130 DVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREI 189
Query: 251 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 310
PPL Y Y L RDFP LT ++NGGI +++E A L+ VMVGR AYQNP L V
Sbjct: 190 PPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQH-MDGVMVGREAYQNPG-ILAAV 247
Query: 311 DTAIYGAPSS 320
D I+G+ +
Sbjct: 248 DREIFGSSDT 257
|
Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs. Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) (taxid: 199310) EC: 1 EC: . EC: - EC: . EC: - EC: . EC: - |
| >sp|Q87L85|DUSA_VIBPA tRNA-dihydrouridine synthase A OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) GN=dusA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 236 bits (602), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 118/247 (47%), Positives = 160/247 (64%), Gaps = 6/247 (2%)
Query: 71 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 130
SVAPM+DWTD H R RL++K LYTEM+ II+ +G+ FLA++ E+HP+ LQ
Sbjct: 7 LSVAPMLDWTDRHCRYFHRLMTKETLLYTEMVTTGAIIHGKGD---FLAYNEEEHPLALQ 63
Query: 131 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 190
+GGSN ++LAK +LA YDEINLN GCPS +V +G FG LM +P+ V + ++ +
Sbjct: 64 LGGSNPEDLAKCAKLAQERGYDEINLNVGCPSDRVQ-NGRFGACLMAEPQLVADCVAAMK 122
Query: 191 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 250
+VPV+VK RIG+DD DSY L DF+ VS F IH+RKA L+G+SP ENR I
Sbjct: 123 EVVDVPVTVKTRIGIDDQDSYEFLTDFVSIVSEKGGCEQFTIHARKAWLSGLSPKENREI 182
Query: 251 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 310
PPL Y Y L +DF LT +NGG+ +++E L+ VM+GR AYQ+P Y L V
Sbjct: 183 PPLDYPRAYQLKQDFSHLTIAINGGVKSLEEAKVHLQH-LDGVMIGREAYQSP-YLLASV 240
Query: 311 DTAIYGA 317
D ++G+
Sbjct: 241 DQELFGS 247
|
Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs. Vibrio parahaemolyticus (taxid: 670) EC: 1 EC: . EC: - EC: . EC: - EC: . EC: - |
| >sp|Q9KUX9|DUSA_VIBCH tRNA-dihydrouridine synthase A OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) GN=dusA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 236 bits (602), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 120/246 (48%), Positives = 155/246 (63%), Gaps = 6/246 (2%)
Query: 71 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 130
SVAPM+DWTD H R RL+S LYTEM+ II+ +G+ FLA++ E+HP+ LQ
Sbjct: 7 LSVAPMLDWTDRHCRYFHRLLSAQTLLYTEMVTTGAIIHGRGD---FLAYNQEEHPVALQ 63
Query: 131 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 190
GGSN +LA +LA YDEINLN GCPS +V +G FG LM +P V E ++ +
Sbjct: 64 FGGSNPKDLAHCAKLAQERGYDEINLNVGCPSDRVQ-NGRFGACLMGEPDLVAECVAAMR 122
Query: 191 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 250
A ++PV+VK RIG+DD DSY L FI V+ F IH+RKA L+G+SP ENR I
Sbjct: 123 AVVDIPVTVKTRIGIDDQDSYEFLTQFIATVAEKGGCEQFTIHARKAWLSGLSPKENREI 182
Query: 251 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 310
PPL Y Y + RDFP LT +NGG+ +++E L+ VM+GR AYQNP Y L V
Sbjct: 183 PPLDYPRAYQIKRDFPHLTIAVNGGVKSLEEAKLHLQH-LDGVMIGREAYQNP-YLLAEV 240
Query: 311 DTAIYG 316
D I+G
Sbjct: 241 DQQIFG 246
|
Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs. Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) (taxid: 243277) EC: 1 EC: . EC: - EC: . EC: - EC: . EC: - |
| >sp|Q8CWK7|DUSA_VIBVU tRNA-dihydrouridine synthase A OS=Vibrio vulnificus (strain CMCP6) GN=dusA PE=3 SV=2 | Back alignment and function description |
|---|
Score = 235 bits (599), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 118/255 (46%), Positives = 161/255 (63%), Gaps = 6/255 (2%)
Query: 71 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 130
SVAPM+DWTD H R RL++K LYTEM+ II+ +G+ FLA++ E+HP+ LQ
Sbjct: 7 LSVAPMLDWTDRHCRYFHRLMTKETLLYTEMITTGAIIHGKGD---FLAYNQEEHPVALQ 63
Query: 131 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 190
+GGSN +LA +LA YDE+NLN GCPS +V +G FG LM +P+ V + ++ +
Sbjct: 64 LGGSNPQDLATCAKLAAERGYDEVNLNVGCPSDRVQ-NGRFGACLMAEPQLVADCVAAMK 122
Query: 191 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 250
++PV+VK RIG+DD DSY L DF+ VS F IH+RKA L+G+SP ENR I
Sbjct: 123 EVVDIPVTVKTRIGIDDQDSYEFLTDFVSIVSEKGGCEQFTIHARKAWLSGLSPKENREI 182
Query: 251 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 310
PPL Y Y L +DF LT +NGG+ +++E L+ VM+GR AYQ+P Y L V
Sbjct: 183 PPLDYPRAYQLKKDFSHLTIAINGGVKSLEEAKEHLQH-LDGVMIGREAYQSP-YLLASV 240
Query: 311 DTAIYGAPSSGLTRR 325
D ++G+ S RR
Sbjct: 241 DQELFGSQSPIKKRR 255
|
Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs. Vibrio vulnificus (taxid: 672) EC: 1 EC: . EC: - EC: . EC: - EC: . EC: - |
| >sp|Q8EAJ0|DUSA_SHEON tRNA-dihydrouridine synthase A OS=Shewanella oneidensis (strain MR-1) GN=dusA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 233 bits (595), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 118/255 (46%), Positives = 164/255 (64%), Gaps = 7/255 (2%)
Query: 71 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 130
FS+APM+DWTD HYR ARL+S +A LYTEM+ I++ +G+ +L ++ E+HP+ LQ
Sbjct: 16 FSIAPMLDWTDRHYRYFARLMSANALLYTEMVTTGAILHGRGD---YLTYNQEEHPLALQ 72
Query: 131 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 190
+GGSN LA+ +LA YDE+NLN GCPS +V +G FG LM +P+ V E + +
Sbjct: 73 LGGSNPVELARCAKLAAERGYDEVNLNVGCPSDRVQ-NGRFGACLMAEPELVAECVDAMK 131
Query: 191 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 250
++PV+VK RIG+D+ DSY L FI V + FIIH+RKA L G+SP ENR I
Sbjct: 132 QVVDIPVTVKTRIGIDEQDSYEFLTHFIDTVMA-KGCGEFIIHARKAWLQGLSPKENREI 190
Query: 251 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 310
PPL Y+ Y L RD+P L ++NGGI ++++ L+ VMVGR AYQNP Y L V
Sbjct: 191 PPLDYDRVYQLKRDYPALNISINGGITSLEQAQTHLQH-LDGVMVGREAYQNP-YMLAQV 248
Query: 311 DTAIYGAPSSGLTRR 325
D + G+ + ++R
Sbjct: 249 DQVLCGSTKAVMSRE 263
|
Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs. Shewanella oneidensis (strain MR-1) (taxid: 211586) EC: 1 EC: . EC: - EC: . EC: - EC: . EC: - |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 326 | ||||||
| 225450085 | 433 | PREDICTED: tRNA-dihydrouridine synthase | 0.984 | 0.741 | 0.791 | 1e-152 | |
| 449516697 | 431 | PREDICTED: tRNA-dihydrouridine synthase | 0.984 | 0.744 | 0.797 | 1e-150 | |
| 449463996 | 431 | PREDICTED: tRNA-dihydrouridine synthase | 0.984 | 0.744 | 0.797 | 1e-150 | |
| 356525006 | 430 | PREDICTED: tRNA-dihydrouridine synthase | 0.984 | 0.746 | 0.772 | 1e-145 | |
| 297736275 | 423 | unnamed protein product [Vitis vinifera] | 0.904 | 0.697 | 0.813 | 1e-143 | |
| 388507496 | 425 | unknown [Lotus japonicus] | 0.966 | 0.741 | 0.763 | 1e-141 | |
| 359487300 | 377 | PREDICTED: tRNA-dihydrouridine synthase | 0.812 | 0.702 | 0.875 | 1e-139 | |
| 224055152 | 378 | predicted protein [Populus trichocarpa] | 0.812 | 0.701 | 0.879 | 1e-138 | |
| 217075895 | 432 | unknown [Medicago truncatula] | 0.981 | 0.740 | 0.736 | 1e-138 | |
| 255553550 | 375 | tRNA-dihydrouridine synthase A, putative | 0.812 | 0.706 | 0.871 | 1e-138 |
| >gi|225450085|ref|XP_002277955.1| PREDICTED: tRNA-dihydrouridine synthase A-like isoform 1 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 544 bits (1402), Expect = e-152, Method: Compositional matrix adjust.
Identities = 254/321 (79%), Positives = 283/321 (88%)
Query: 5 MVKFAGSSLISSFTPFDSVLLKKHRRFSVNSFFKNSNNPRSLSTCTQNIILHTKAEMVAR 64
M+K AG +L +SF P S++LK HRR S+N + NS ++ + + LHTK MVA
Sbjct: 1 MMKSAGYTLTASFNPIHSIILKNHRRLSLNILYGNSAKSKNSTAYIRKHQLHTKVVMVAG 60
Query: 65 QYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQ 124
QYLPPWFSVAPMMDWT+NHYRTLARLISKHAWLYTEM+AAETI+YQ+ NLDRFL FSP+Q
Sbjct: 61 QYLPPWFSVAPMMDWTNNHYRTLARLISKHAWLYTEMIAAETIVYQEKNLDRFLEFSPDQ 120
Query: 125 HPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGE 184
HPIVLQIGG+NLDN+AKATELAN+Y YDEINLNCGCPSPKVAGHGCFGV LMLDPKFV E
Sbjct: 121 HPIVLQIGGNNLDNIAKATELANSYCYDEINLNCGCPSPKVAGHGCFGVRLMLDPKFVAE 180
Query: 185 AMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISP 244
AMSVIAAN++VPVSVKCRIGVDDHDSYN+LCDFIYKVSS SPTRHFIIHSRKALLNGISP
Sbjct: 181 AMSVIAANSDVPVSVKCRIGVDDHDSYNELCDFIYKVSSQSPTRHFIIHSRKALLNGISP 240
Query: 245 AENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW 304
A+NR IPPLKYEYY+ LLRDFPDL FT+NGGIN VDEVNAALR+GAH VMVGRAAY NPW
Sbjct: 241 ADNRKIPPLKYEYYFGLLRDFPDLRFTINGGINCVDEVNAALRQGAHGVMVGRAAYHNPW 300
Query: 305 YTLGHVDTAIYGAPSSGLTRR 325
YTLGHVD+A+YGAP S L+RR
Sbjct: 301 YTLGHVDSAVYGAPVSDLSRR 321
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449516697|ref|XP_004165383.1| PREDICTED: tRNA-dihydrouridine synthase A-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 538 bits (1386), Expect = e-150, Method: Compositional matrix adjust.
Identities = 256/321 (79%), Positives = 281/321 (87%)
Query: 5 MVKFAGSSLISSFTPFDSVLLKKHRRFSVNSFFKNSNNPRSLSTCTQNIILHTKAEMVAR 64
M+KFAG S+ +S TP SV+ H R S + KN + P S S+ Q + +AEMVA
Sbjct: 1 MMKFAGCSVTASLTPVQSVIQNSHPRLSSSILQKNLSKPISWSSGNQILRQGPEAEMVAG 60
Query: 65 QYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQ 124
+Y PPWFSVAPMM+ TDNHYRTLARLISKHAWLYTEMLAAETI+YQ+ NLDRFLAFSP+Q
Sbjct: 61 RYSPPWFSVAPMMECTDNHYRTLARLISKHAWLYTEMLAAETIVYQKDNLDRFLAFSPDQ 120
Query: 125 HPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGE 184
HPIVLQIGG+NLDN+AKA ELAN Y YDEINLNCGCPSPKVAGHGCFGV LMLDPKFVGE
Sbjct: 121 HPIVLQIGGNNLDNIAKAIELANPYGYDEINLNCGCPSPKVAGHGCFGVRLMLDPKFVGE 180
Query: 185 AMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISP 244
AMSVIAA T+ PVSVKCRIGVDDHDSYN+LCDFIYKVSSLSPT+HF+IHSRKALLNGISP
Sbjct: 181 AMSVIAAKTDAPVSVKCRIGVDDHDSYNELCDFIYKVSSLSPTKHFVIHSRKALLNGISP 240
Query: 245 AENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW 304
AENRTIPPLKYEY+YAL+RDFPDL FT+NGGINTVDE NAALR GAH VM+GRAAYQNPW
Sbjct: 241 AENRTIPPLKYEYFYALMRDFPDLRFTINGGINTVDEANAALRLGAHGVMMGRAAYQNPW 300
Query: 305 YTLGHVDTAIYGAPSSGLTRR 325
TLGHVDTAIYGAPSSG+TRR
Sbjct: 301 RTLGHVDTAIYGAPSSGITRR 321
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449463996|ref|XP_004149715.1| PREDICTED: tRNA-dihydrouridine synthase A-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 537 bits (1383), Expect = e-150, Method: Compositional matrix adjust.
Identities = 256/321 (79%), Positives = 281/321 (87%)
Query: 5 MVKFAGSSLISSFTPFDSVLLKKHRRFSVNSFFKNSNNPRSLSTCTQNIILHTKAEMVAR 64
M+KFAG S+ +S TP SV+ H R S + KN + P S S+ Q + +AEMVA
Sbjct: 1 MMKFAGCSVTASSTPVQSVIQNSHPRLSSSILQKNLSKPISWSSGNQILRQGPEAEMVAG 60
Query: 65 QYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQ 124
+Y PPWFSVAPMM+ TDNHYRTLARLISKHAWLYTEMLAAETI+YQ+ NLDRFLAFSP+Q
Sbjct: 61 RYSPPWFSVAPMMECTDNHYRTLARLISKHAWLYTEMLAAETIVYQKDNLDRFLAFSPDQ 120
Query: 125 HPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGE 184
HPIVLQIGG+NLDN+AKA ELAN Y YDEINLNCGCPSPKVAGHGCFGV LMLDPKFVGE
Sbjct: 121 HPIVLQIGGNNLDNIAKAIELANPYGYDEINLNCGCPSPKVAGHGCFGVRLMLDPKFVGE 180
Query: 185 AMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISP 244
AMSVIAA T+ PVSVKCRIGVDDHDSYN+LCDFIYKVSSLSPT+HF+IHSRKALLNGISP
Sbjct: 181 AMSVIAAKTDAPVSVKCRIGVDDHDSYNELCDFIYKVSSLSPTKHFVIHSRKALLNGISP 240
Query: 245 AENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW 304
AENRTIPPLKYEY+YAL+RDFPDL FT+NGGINTVDE NAALR GAH VM+GRAAYQNPW
Sbjct: 241 AENRTIPPLKYEYFYALMRDFPDLRFTINGGINTVDEANAALRLGAHGVMMGRAAYQNPW 300
Query: 305 YTLGHVDTAIYGAPSSGLTRR 325
TLGHVDTAIYGAPSSG+TRR
Sbjct: 301 RTLGHVDTAIYGAPSSGITRR 321
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356525006|ref|XP_003531118.1| PREDICTED: tRNA-dihydrouridine synthase A-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 520 bits (1338), Expect = e-145, Method: Compositional matrix adjust.
Identities = 248/321 (77%), Positives = 276/321 (85%)
Query: 5 MVKFAGSSLISSFTPFDSVLLKKHRRFSVNSFFKNSNNPRSLSTCTQNIILHTKAEMVAR 64
M+K AG SL SF P S ++K ++RF+V +N + R ST Q LH K +VAR
Sbjct: 1 MMKLAGYSLAVSFAPISSNVVKSNKRFTVGISHRNRCSYRLFSTHAQKHQLHEKPGVVAR 60
Query: 65 QYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQ 124
+LPPWFSVAPMMDWTD+HYRTLARLISKHAWLYTEMLAAETI++Q+ NLDRFLA+SP+Q
Sbjct: 61 YHLPPWFSVAPMMDWTDHHYRTLARLISKHAWLYTEMLAAETIVHQKDNLDRFLAYSPDQ 120
Query: 125 HPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGE 184
HPIVLQIGGSN++NLAKATELANAY YDEINLNCGCPSPKVAGHGCFGVSLML+PKFV E
Sbjct: 121 HPIVLQIGGSNIENLAKATELANAYCYDEINLNCGCPSPKVAGHGCFGVSLMLNPKFVAE 180
Query: 185 AMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISP 244
AMS IAA+TNVPVSVKCRIGVDDHDSYN+LCDFIY+VSSLSPT+HFIIHSRKALLNGISP
Sbjct: 181 AMSAIAASTNVPVSVKCRIGVDDHDSYNELCDFIYQVSSLSPTKHFIIHSRKALLNGISP 240
Query: 245 AENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW 304
AENR+IPPLKYEY+Y LLRDFPDL FT+NGGI +VDEV+AA GAH VMVGRAAY NPW
Sbjct: 241 AENRSIPPLKYEYFYGLLRDFPDLRFTINGGITSVDEVSAAREAGAHGVMVGRAAYNNPW 300
Query: 305 YTLGHVDTAIYGAPSSGLTRR 325
LGHVD AIYG PS LTRR
Sbjct: 301 QILGHVDAAIYGTPSCDLTRR 321
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297736275|emb|CBI24913.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 514 bits (1323), Expect = e-143, Method: Compositional matrix adjust.
Identities = 240/295 (81%), Positives = 264/295 (89%)
Query: 31 FSVNSFFKNSNNPRSLSTCTQNIILHTKAEMVARQYLPPWFSVAPMMDWTDNHYRTLARL 90
S+N + NS ++ + + LHTK MVA QYLPPWFSVAPMMDWT+NHYRTLARL
Sbjct: 17 LSLNILYGNSAKSKNSTAYIRKHQLHTKVVMVAGQYLPPWFSVAPMMDWTNNHYRTLARL 76
Query: 91 ISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSNLDNLAKATELANAYN 150
ISKHAWLYTEM+AAETI+YQ+ NLDRFL FSP+QHPIVLQIGG+NLDN+AKATELAN+Y
Sbjct: 77 ISKHAWLYTEMIAAETIVYQEKNLDRFLEFSPDQHPIVLQIGGNNLDNIAKATELANSYC 136
Query: 151 YDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDS 210
YDEINLNCGCPSPKVAGHGCFGV LMLDPKFV EAMSVIAAN++VPVSVKCRIGVDDHDS
Sbjct: 137 YDEINLNCGCPSPKVAGHGCFGVRLMLDPKFVAEAMSVIAANSDVPVSVKCRIGVDDHDS 196
Query: 211 YNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTF 270
YN+LCDFIYKVSS SPTRHFIIHSRKALLNGISPA+NR IPPLKYEYY+ LLRDFPDL F
Sbjct: 197 YNELCDFIYKVSSQSPTRHFIIHSRKALLNGISPADNRKIPPLKYEYYFGLLRDFPDLRF 256
Query: 271 TLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRR 325
T+NGGIN VDEVNAALR+GAH VMVGRAAY NPWYTLGHVD+A+YGAP S L+RR
Sbjct: 257 TINGGINCVDEVNAALRQGAHGVMVGRAAYHNPWYTLGHVDSAVYGAPVSDLSRR 311
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|388507496|gb|AFK41814.1| unknown [Lotus japonicus] | Back alignment and taxonomy information |
|---|
Score = 506 bits (1304), Expect = e-141, Method: Compositional matrix adjust.
Identities = 245/321 (76%), Positives = 274/321 (85%), Gaps = 6/321 (1%)
Query: 5 MVKFAGSSLISSFTPFDSVLLKKHRRFSVNSFFKNSNNPRSLSTCTQNIILHTKAEMVAR 64
M+KF+G SL SF+P S +++ + RF V F++S+ R S Q+ H K ++
Sbjct: 1 MMKFSGYSLAVSFSPVGSTVIRNNCRFHVGRNFRSSS--RFFSAKQQS---HDKG-VLPN 54
Query: 65 QYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQ 124
YLPPWFSVAPMM+WTD+HYRTLARLISKHAWLYTEMLAAETI+YQQ NLDRFLAFSP+Q
Sbjct: 55 YYLPPWFSVAPMMEWTDHHYRTLARLISKHAWLYTEMLAAETIVYQQDNLDRFLAFSPDQ 114
Query: 125 HPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGE 184
HPIVLQIGGSN++ LAKATELANAY YDEINLNCGCPSPKVAGHGCFGVSLMLDPKFV E
Sbjct: 115 HPIVLQIGGSNVEKLAKATELANAYGYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVAE 174
Query: 185 AMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISP 244
AMS I ANTNVPVSVKCRIGVDDHDSY++LCDFI+KVSSLSPT+HFIIHSRKALLNGISP
Sbjct: 175 AMSAITANTNVPVSVKCRIGVDDHDSYDELCDFIFKVSSLSPTKHFIIHSRKALLNGISP 234
Query: 245 AENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW 304
AENR+IPPLKYEY+Y LLRDFPDLTFT+NGGI +VDEV AA GA+ V VGRAAY NPW
Sbjct: 235 AENRSIPPLKYEYFYGLLRDFPDLTFTINGGITSVDEVYAAREAGAYGVTVGRAAYNNPW 294
Query: 305 YTLGHVDTAIYGAPSSGLTRR 325
+ LGHVDT IYGAPS LTRR
Sbjct: 295 HILGHVDTVIYGAPSCSLTRR 315
|
Source: Lotus japonicus Species: Lotus japonicus Genus: Lotus Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359487300|ref|XP_003633563.1| PREDICTED: tRNA-dihydrouridine synthase A-like isoform 2 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 501 bits (1291), Expect = e-139, Method: Compositional matrix adjust.
Identities = 232/265 (87%), Positives = 250/265 (94%)
Query: 61 MVARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAF 120
MVA QYLPPWFSVAPMMDWT+NHYRTLARLISKHAWLYTEM+AAETI+YQ+ NLDRFL F
Sbjct: 1 MVAGQYLPPWFSVAPMMDWTNNHYRTLARLISKHAWLYTEMIAAETIVYQEKNLDRFLEF 60
Query: 121 SPEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPK 180
SP+QHPIVLQIGG+NLDN+AKATELAN+Y YDEINLNCGCPSPKVAGHGCFGV LMLDPK
Sbjct: 61 SPDQHPIVLQIGGNNLDNIAKATELANSYCYDEINLNCGCPSPKVAGHGCFGVRLMLDPK 120
Query: 181 FVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLN 240
FV EAMSVIAAN++VPVSVKCRIGVDDHDSYN+LCDFIYKVSS SPTRHFIIHSRKALLN
Sbjct: 121 FVAEAMSVIAANSDVPVSVKCRIGVDDHDSYNELCDFIYKVSSQSPTRHFIIHSRKALLN 180
Query: 241 GISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAY 300
GISPA+NR IPPLKYEYY+ LLRDFPDL FT+NGGIN VDEVNAALR+GAH VMVGRAAY
Sbjct: 181 GISPADNRKIPPLKYEYYFGLLRDFPDLRFTINGGINCVDEVNAALRQGAHGVMVGRAAY 240
Query: 301 QNPWYTLGHVDTAIYGAPSSGLTRR 325
NPWYTLGHVD+A+YGAP S L+RR
Sbjct: 241 HNPWYTLGHVDSAVYGAPVSDLSRR 265
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224055152|ref|XP_002298425.1| predicted protein [Populus trichocarpa] gi|222845683|gb|EEE83230.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 496 bits (1277), Expect = e-138, Method: Compositional matrix adjust.
Identities = 233/265 (87%), Positives = 248/265 (93%)
Query: 61 MVARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAF 120
M QY PP FSVAPMMDWTDNHYRT+AR+ISKHAWLYTEMLAAETI++QQG+LDRFLAF
Sbjct: 1 MGVEQYRPPLFSVAPMMDWTDNHYRTVARIISKHAWLYTEMLAAETIVHQQGDLDRFLAF 60
Query: 121 SPEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPK 180
SPEQHPIVLQIGG+NLDN+AKAT LAN+Y YDEINLNCGCPSPKVAGHGCFGV LMLDPK
Sbjct: 61 SPEQHPIVLQIGGNNLDNIAKATRLANSYGYDEINLNCGCPSPKVAGHGCFGVRLMLDPK 120
Query: 181 FVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLN 240
FVGEAMSVIAANT+VPVSVKCRIG+DDHDSYN+LCDFIYKVSSLSPT+HFIIHSRKALLN
Sbjct: 121 FVGEAMSVIAANTDVPVSVKCRIGLDDHDSYNELCDFIYKVSSLSPTKHFIIHSRKALLN 180
Query: 241 GISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAY 300
GISPA+NR IPPLKYEYYYALLRDFPDL FT+NGGIN VDEVNAALR+GAH VMVGRAAY
Sbjct: 181 GISPADNRRIPPLKYEYYYALLRDFPDLRFTINGGINCVDEVNAALREGAHGVMVGRAAY 240
Query: 301 QNPWYTLGHVDTAIYGAPSSGLTRR 325
W TL HVDTAIYGAPSSGLTRR
Sbjct: 241 NYLWNTLAHVDTAIYGAPSSGLTRR 265
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|217075895|gb|ACJ86307.1| unknown [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 496 bits (1277), Expect = e-138, Method: Compositional matrix adjust.
Identities = 238/323 (73%), Positives = 273/323 (84%), Gaps = 3/323 (0%)
Query: 6 VKFAGSSLISSFTPFDSVLLKKH---RRFSVNSFFKNSNNPRSLSTCTQNIILHTKAEMV 62
+KF+G S+ SF+P S + ++ RR V+ ++ N S + + K ++
Sbjct: 1 MKFSGYSISVSFSPLSSNFITRNSCSRRLPVSFSRRSRRNLCSSRVFSVKQQSYHKHGVL 60
Query: 63 ARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSP 122
+QYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETI++Q+ NLDRFLA+SP
Sbjct: 61 GKQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIVHQKDNLDRFLAYSP 120
Query: 123 EQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFV 182
EQHPIVLQIGGSN+++LAKATELANAY YDEINLNCGCPSP+VAGHG FGVSLMLDPKFV
Sbjct: 121 EQHPIVLQIGGSNIESLAKATELANAYCYDEINLNCGCPSPRVAGHGSFGVSLMLDPKFV 180
Query: 183 GEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGI 242
EAMS IAANTNVPVSVKCRIGVDD DSY++LC+F+ VSSLSPT+HFIIHSRKALLNGI
Sbjct: 181 AEAMSAIAANTNVPVSVKCRIGVDDRDSYDELCEFVSTVSSLSPTKHFIIHSRKALLNGI 240
Query: 243 SPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN 302
SPAENR+IPPLKYEY+Y LLRDFPDLTFT+NGGI +VDEVNAA GAH VM+GRAA+ N
Sbjct: 241 SPAENRSIPPLKYEYFYGLLRDFPDLTFTINGGITSVDEVNAARDAGAHGVMIGRAAFYN 300
Query: 303 PWYTLGHVDTAIYGAPSSGLTRR 325
PW+ LGHVDTAIYGAPS GLTRR
Sbjct: 301 PWHILGHVDTAIYGAPSCGLTRR 323
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255553550|ref|XP_002517816.1| tRNA-dihydrouridine synthase A, putative [Ricinus communis] gi|223543088|gb|EEF44623.1| tRNA-dihydrouridine synthase A, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 495 bits (1275), Expect = e-138, Method: Compositional matrix adjust.
Identities = 231/265 (87%), Positives = 247/265 (93%)
Query: 61 MVARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAF 120
M +Y PP FSVAPMMDWTD+HYRTLARLISKH+WLYTEMLAAETI+YQQGNLDRFLAF
Sbjct: 1 MGVGRYHPPLFSVAPMMDWTDHHYRTLARLISKHSWLYTEMLAAETIVYQQGNLDRFLAF 60
Query: 121 SPEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPK 180
SP+QHPIVLQIGGSNLDNLAKATELA AY YDEIN NCGCPSP+VAGHGCFGV LMLDPK
Sbjct: 61 SPQQHPIVLQIGGSNLDNLAKATELATAYGYDEINFNCGCPSPRVAGHGCFGVRLMLDPK 120
Query: 181 FVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLN 240
FVGEAMSVIAANT+VPVSVKCRIGVD+HDSYN+LCDFIYKVSSLSPT+HFIIHSRKALLN
Sbjct: 121 FVGEAMSVIAANTDVPVSVKCRIGVDNHDSYNELCDFIYKVSSLSPTKHFIIHSRKALLN 180
Query: 241 GISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAY 300
GISPAENR IPPLKYEYY+ALLRDFPDL FT+NGGIN +DEVN ALR+GAH VMVGRAA+
Sbjct: 181 GISPAENRKIPPLKYEYYFALLRDFPDLRFTINGGINCIDEVNLALREGAHGVMVGRAAF 240
Query: 301 QNPWYTLGHVDTAIYGAPSSGLTRR 325
NPW LGHVD+AIYGAP SGLTRR
Sbjct: 241 NNPWTVLGHVDSAIYGAPESGLTRR 265
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 326 | ||||||
| TAIR|locus:2087408 | 419 | AT3G63510 [Arabidopsis thalian | 0.797 | 0.620 | 0.834 | 5.1e-122 | |
| TAIR|locus:2152758 | 387 | AT5G47970 [Arabidopsis thalian | 0.809 | 0.682 | 0.795 | 1.1e-117 | |
| UNIPROTKB|P32695 | 330 | dusA "tRNA-dihydrouridine synt | 0.739 | 0.730 | 0.506 | 1.2e-58 | |
| UNIPROTKB|Q9KUX9 | 327 | dusA "tRNA-dihydrouridine synt | 0.733 | 0.730 | 0.489 | 2e-56 | |
| TIGR_CMR|VC_0379 | 327 | VC_0379 "TIM-barrel protein, y | 0.733 | 0.730 | 0.489 | 2e-56 | |
| UNIPROTKB|Q8EAJ0 | 335 | dusA "tRNA-dihydrouridine synt | 0.757 | 0.737 | 0.464 | 2.5e-56 | |
| TIGR_CMR|SO_3912 | 335 | SO_3912 "TIM-barrel protein, y | 0.757 | 0.737 | 0.464 | 2.5e-56 | |
| UNIPROTKB|Q48A03 | 335 | CPS_0353 "tRNA-dihydrouridine | 0.809 | 0.788 | 0.433 | 2.3e-55 | |
| TIGR_CMR|CPS_0353 | 335 | CPS_0353 "TIM-barrel protein, | 0.809 | 0.788 | 0.433 | 2.3e-55 | |
| UNIPROTKB|Q607T6 | 360 | MCA1669 "tRNA-dihydrouridine s | 0.733 | 0.663 | 0.469 | 3.7e-55 |
| TAIR|locus:2087408 AT3G63510 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1200 (427.5 bits), Expect = 5.1e-122, P = 5.1e-122
Identities = 217/260 (83%), Positives = 243/260 (93%)
Query: 66 YLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQH 125
YLPP FSVAPMMDWTDNHYRTLARLI+KHAWLYTEM+AAET+++QQ NLDRFLAFSP+QH
Sbjct: 49 YLPPSFSVAPMMDWTDNHYRTLARLITKHAWLYTEMIAAETLVHQQTNLDRFLAFSPQQH 108
Query: 126 PIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEA 185
PIVLQ+GGSN++NLAKA +L++AY YDEINLNCGCPSPKVAGHGCFGVSLML PK VGEA
Sbjct: 109 PIVLQLGGSNVENLAKAAKLSDAYGYDEINLNCGCPSPKVAGHGCFGVSLMLKPKLVGEA 168
Query: 186 MSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPA 245
MS IAANTNVPV+VKCRIGVD+HDSY++LCDFIYKVS+LSPTRHFI+HSRKALL GISPA
Sbjct: 169 MSAIAANTNVPVTVKCRIGVDNHDSYDELCDFIYKVSTLSPTRHFIVHSRKALLGGISPA 228
Query: 246 ENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 305
+NR IPPLKYEYYYAL+RDFPDL FT+NGGI +V +VNAAL++GAH VMVGRAAY NPW
Sbjct: 229 DNRRIPPLKYEYYYALVRDFPDLRFTINGGITSVSKVNAALKEGAHGVMVGRAAYNNPWQ 288
Query: 306 TLGHVDTAIYGAPSSGLTRR 325
TLG VDTA+YG PSSGLTRR
Sbjct: 289 TLGQVDTAVYGVPSSGLTRR 308
|
|
| TAIR|locus:2152758 AT5G47970 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1159 (413.0 bits), Expect = 1.1e-117, P = 1.1e-117
Identities = 210/264 (79%), Positives = 237/264 (89%)
Query: 62 VARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFS 121
V+ Y PP FS+APMM WTDNHYRTLARLI+KHAWLYTEMLAAETI+YQ+ NLD FLAFS
Sbjct: 3 VSEAYSPPLFSIAPMMGWTDNHYRTLARLITKHAWLYTEMLAAETIVYQEDNLDSFLAFS 62
Query: 122 PEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKF 181
P+QHPIVLQIGG NL+NLAKAT LANAY YDEIN NCGCPSPKV+G GCFG LMLDPKF
Sbjct: 63 PDQHPIVLQIGGRNLENLAKATRLANAYAYDEINFNCGCPSPKVSGRGCFGALLMLDPKF 122
Query: 182 VGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNG 241
VGEAMSVIAANTN V+VKCRIGVDDHDSYN+LCDFI+ VSSLSPT+HFIIHSRKALL+G
Sbjct: 123 VGEAMSVIAANTNAAVTVKCRIGVDDHDSYNELCDFIHIVSSLSPTKHFIIHSRKALLSG 182
Query: 242 ISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 301
+SP++NR IPPLKYE+++ALLRDFPDL FT+NGGIN+V E +AALR GAH VM+GRA Y
Sbjct: 183 LSPSDNRRIPPLKYEFFFALLRDFPDLKFTINGGINSVVEADAALRSGAHGVMLGRAVYY 242
Query: 302 NPWYTLGHVDTAIYGAPSSGLTRR 325
NPW+ LGHVDT +YG+PSSG+TRR
Sbjct: 243 NPWHILGHVDTVVYGSPSSGITRR 266
|
|
| UNIPROTKB|P32695 dusA "tRNA-dihydrouridine synthase A" [Escherichia coli K-12 (taxid:83333)] | Back alignment and assigned GO terms |
|---|
Score = 602 (217.0 bits), Expect = 1.2e-58, P = 1.2e-58
Identities = 125/247 (50%), Positives = 163/247 (65%)
Query: 71 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 130
FSVAPM+DWTD H R RL+S++ LYTEM+ II+ +G+ +LA+S E+HP+ LQ
Sbjct: 13 FSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGD---YLAYSEEEHPVALQ 69
Query: 131 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 190
+GGS+ LA+ +LA A YDEINLN GCPS +V +G FG LM + + V + + +
Sbjct: 70 LGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMR 128
Query: 191 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 250
++PV+VK RIG+DD DSY LCDFI VS FIIH+RKA L+G+SP ENR I
Sbjct: 129 DVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREI 188
Query: 251 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 310
PPL Y Y L RDFP LT ++NGGI +++E A L+ VMVGR AYQNP L V
Sbjct: 189 PPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQH-MDGVMVGREAYQNPGI-LAAV 246
Query: 311 DTAIYGA 317
D I+G+
Sbjct: 247 DREIFGS 253
|
|
| UNIPROTKB|Q9KUX9 dusA "tRNA-dihydrouridine synthase A" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] | Back alignment and assigned GO terms |
|---|
Score = 581 (209.6 bits), Expect = 2.0e-56, P = 2.0e-56
Identities = 120/245 (48%), Positives = 155/245 (63%)
Query: 72 SVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQI 131
SVAPM+DWTD H R RL+S LYTEM+ II+ +G+ FLA++ E+HP+ LQ
Sbjct: 8 SVAPMLDWTDRHCRYFHRLLSAQTLLYTEMVTTGAIIHGRGD---FLAYNQEEHPVALQF 64
Query: 132 GGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAA 191
GGSN +LA +LA YDEINLN GCPS +V +G FG LM +P V E ++ + A
Sbjct: 65 GGSNPKDLAHCAKLAQERGYDEINLNVGCPSDRVQ-NGRFGACLMGEPDLVAECVAAMRA 123
Query: 192 NTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIP 251
++PV+VK RIG+DD DSY L FI V+ F IH+RKA L+G+SP ENR IP
Sbjct: 124 VVDIPVTVKTRIGIDDQDSYEFLTQFIATVAEKGGCEQFTIHARKAWLSGLSPKENREIP 183
Query: 252 PLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVD 311
PL Y Y + RDFP LT +NGG+ +++E L+ VM+GR AYQNP Y L VD
Sbjct: 184 PLDYPRAYQIKRDFPHLTIAVNGGVKSLEEAKLHLQH-LDGVMIGREAYQNP-YLLAEVD 241
Query: 312 TAIYG 316
I+G
Sbjct: 242 QQIFG 246
|
|
| TIGR_CMR|VC_0379 VC_0379 "TIM-barrel protein, yjbN family" [Vibrio cholerae O1 biovar El Tor (taxid:686)] | Back alignment and assigned GO terms |
|---|
Score = 581 (209.6 bits), Expect = 2.0e-56, P = 2.0e-56
Identities = 120/245 (48%), Positives = 155/245 (63%)
Query: 72 SVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQI 131
SVAPM+DWTD H R RL+S LYTEM+ II+ +G+ FLA++ E+HP+ LQ
Sbjct: 8 SVAPMLDWTDRHCRYFHRLLSAQTLLYTEMVTTGAIIHGRGD---FLAYNQEEHPVALQF 64
Query: 132 GGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAA 191
GGSN +LA +LA YDEINLN GCPS +V +G FG LM +P V E ++ + A
Sbjct: 65 GGSNPKDLAHCAKLAQERGYDEINLNVGCPSDRVQ-NGRFGACLMGEPDLVAECVAAMRA 123
Query: 192 NTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIP 251
++PV+VK RIG+DD DSY L FI V+ F IH+RKA L+G+SP ENR IP
Sbjct: 124 VVDIPVTVKTRIGIDDQDSYEFLTQFIATVAEKGGCEQFTIHARKAWLSGLSPKENREIP 183
Query: 252 PLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVD 311
PL Y Y + RDFP LT +NGG+ +++E L+ VM+GR AYQNP Y L VD
Sbjct: 184 PLDYPRAYQIKRDFPHLTIAVNGGVKSLEEAKLHLQH-LDGVMIGREAYQNP-YLLAEVD 241
Query: 312 TAIYG 316
I+G
Sbjct: 242 QQIFG 246
|
|
| UNIPROTKB|Q8EAJ0 dusA "tRNA-dihydrouridine synthase A" [Shewanella oneidensis MR-1 (taxid:211586)] | Back alignment and assigned GO terms |
|---|
Score = 580 (209.2 bits), Expect = 2.5e-56, P = 2.5e-56
Identities = 118/254 (46%), Positives = 164/254 (64%)
Query: 71 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 130
FS+APM+DWTD HYR ARL+S +A LYTEM+ I++ +G+ +L ++ E+HP+ LQ
Sbjct: 16 FSIAPMLDWTDRHYRYFARLMSANALLYTEMVTTGAILHGRGD---YLTYNQEEHPLALQ 72
Query: 131 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 190
+GGSN LA+ +LA YDE+NLN GCPS +V +G FG LM +P+ V E + +
Sbjct: 73 LGGSNPVELARCAKLAAERGYDEVNLNVGCPSDRVQ-NGRFGACLMAEPELVAECVDAMK 131
Query: 191 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 250
++PV+VK RIG+D+ DSY L FI V + FIIH+RKA L G+SP ENR I
Sbjct: 132 QVVDIPVTVKTRIGIDEQDSYEFLTHFIDTVMAKG-CGEFIIHARKAWLQGLSPKENREI 190
Query: 251 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 310
PPL Y+ Y L RD+P L ++NGGI ++++ L+ VMVGR AYQNP Y L V
Sbjct: 191 PPLDYDRVYQLKRDYPALNISINGGITSLEQAQTHLQH-LDGVMVGREAYQNP-YMLAQV 248
Query: 311 DTAIYGAPSSGLTR 324
D + G+ + ++R
Sbjct: 249 DQVLCGSTKAVMSR 262
|
|
| TIGR_CMR|SO_3912 SO_3912 "TIM-barrel protein, yjbN family" [Shewanella oneidensis MR-1 (taxid:211586)] | Back alignment and assigned GO terms |
|---|
Score = 580 (209.2 bits), Expect = 2.5e-56, P = 2.5e-56
Identities = 118/254 (46%), Positives = 164/254 (64%)
Query: 71 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 130
FS+APM+DWTD HYR ARL+S +A LYTEM+ I++ +G+ +L ++ E+HP+ LQ
Sbjct: 16 FSIAPMLDWTDRHYRYFARLMSANALLYTEMVTTGAILHGRGD---YLTYNQEEHPLALQ 72
Query: 131 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 190
+GGSN LA+ +LA YDE+NLN GCPS +V +G FG LM +P+ V E + +
Sbjct: 73 LGGSNPVELARCAKLAAERGYDEVNLNVGCPSDRVQ-NGRFGACLMAEPELVAECVDAMK 131
Query: 191 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 250
++PV+VK RIG+D+ DSY L FI V + FIIH+RKA L G+SP ENR I
Sbjct: 132 QVVDIPVTVKTRIGIDEQDSYEFLTHFIDTVMAKG-CGEFIIHARKAWLQGLSPKENREI 190
Query: 251 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 310
PPL Y+ Y L RD+P L ++NGGI ++++ L+ VMVGR AYQNP Y L V
Sbjct: 191 PPLDYDRVYQLKRDYPALNISINGGITSLEQAQTHLQH-LDGVMVGREAYQNP-YMLAQV 248
Query: 311 DTAIYGAPSSGLTR 324
D + G+ + ++R
Sbjct: 249 DQVLCGSTKAVMSR 262
|
|
| UNIPROTKB|Q48A03 CPS_0353 "tRNA-dihydrouridine synthase" [Colwellia psychrerythraea 34H (taxid:167879)] | Back alignment and assigned GO terms |
|---|
Score = 571 (206.1 bits), Expect = 2.3e-55, P = 2.3e-55
Identities = 118/272 (43%), Positives = 171/272 (62%)
Query: 53 IILHTKAEMVARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQG 112
II +K +AR + SVAPM+DWTD H R RL+++H LYTEM+ I+ +G
Sbjct: 3 IITDSKP-YIARATINHKLSVAPMLDWTDKHSRYFYRLMTQHTVLYTEMVTTGAILRGKG 61
Query: 113 NLDRFLAFSPEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFG 172
+ +L+++ +HP+VLQ+GGS++ + + ++A Y YDE+N+N GCPS +V +G FG
Sbjct: 62 D---YLSYNDAEHPLVLQLGGSDVKAMTECAKIAEQYGYDEVNINVGCPSDRVQ-NGRFG 117
Query: 173 VSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFII 232
LM +P V + ++ + + TN+PV+VK RIG+DD DSY L FI +VS + RHFII
Sbjct: 118 ACLMAEPALVAQCVNQMQSATNIPVTVKSRIGIDDLDSYEFLHTFIEEVSK-ADCRHFII 176
Query: 233 HSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHH 292
H+RKA L G+SP +NR +PPL Y+ Y + DF DL ++NGGI T E N L+
Sbjct: 177 HARKAWLTGLSPKQNRDVPPLDYDRVYQIKNDFKDLEVSINGGIKTFSEANEHLQH-IDG 235
Query: 293 VMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTR 324
VM+GR Y +P Y L D IY + + L+R
Sbjct: 236 VMIGREIYNSP-YMLADADNEIYQSDTIKLSR 266
|
|
| TIGR_CMR|CPS_0353 CPS_0353 "TIM-barrel protein, yjbN family" [Colwellia psychrerythraea 34H (taxid:167879)] | Back alignment and assigned GO terms |
|---|
Score = 571 (206.1 bits), Expect = 2.3e-55, P = 2.3e-55
Identities = 118/272 (43%), Positives = 171/272 (62%)
Query: 53 IILHTKAEMVARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQG 112
II +K +AR + SVAPM+DWTD H R RL+++H LYTEM+ I+ +G
Sbjct: 3 IITDSKP-YIARATINHKLSVAPMLDWTDKHSRYFYRLMTQHTVLYTEMVTTGAILRGKG 61
Query: 113 NLDRFLAFSPEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFG 172
+ +L+++ +HP+VLQ+GGS++ + + ++A Y YDE+N+N GCPS +V +G FG
Sbjct: 62 D---YLSYNDAEHPLVLQLGGSDVKAMTECAKIAEQYGYDEVNINVGCPSDRVQ-NGRFG 117
Query: 173 VSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFII 232
LM +P V + ++ + + TN+PV+VK RIG+DD DSY L FI +VS + RHFII
Sbjct: 118 ACLMAEPALVAQCVNQMQSATNIPVTVKSRIGIDDLDSYEFLHTFIEEVSK-ADCRHFII 176
Query: 233 HSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHH 292
H+RKA L G+SP +NR +PPL Y+ Y + DF DL ++NGGI T E N L+
Sbjct: 177 HARKAWLTGLSPKQNRDVPPLDYDRVYQIKNDFKDLEVSINGGIKTFSEANEHLQH-IDG 235
Query: 293 VMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTR 324
VM+GR Y +P Y L D IY + + L+R
Sbjct: 236 VMIGREIYNSP-YMLADADNEIYQSDTIKLSR 266
|
|
| UNIPROTKB|Q607T6 MCA1669 "tRNA-dihydrouridine synthase" [Methylococcus capsulatus str. Bath (taxid:243233)] | Back alignment and assigned GO terms |
|---|
Score = 569 (205.4 bits), Expect = 3.7e-55, P = 3.7e-55
Identities = 115/245 (46%), Positives = 152/245 (62%)
Query: 72 SVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQI 131
SVAPMMDWTD H R RLIS+H LYTEM+ I++ G+ +R L F P +HP+ +Q+
Sbjct: 31 SVAPMMDWTDRHCRFFLRLISRHTLLYTEMVTTAAILH--GDRERLLGFHPAEHPLAIQL 88
Query: 132 GGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAA 191
GGS+ + LA+ ++A +DE+NLN GCPSP+V G FG LM +P+ V + + +
Sbjct: 89 GGSDPEALAECAKIAEFRGFDEVNLNVGCPSPRVQT-GRFGACLMAEPERVADCVRAMCE 147
Query: 192 NTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIP 251
+VPV+VK RIG+DD DSY L F+ V+ R FI+H+RKA L G+SP ENR P
Sbjct: 148 AVSVPVTVKTRIGIDDRDSYEDLLHFVTIVAEAG-CRTFIVHARKAWLQGLSPKENRQTP 206
Query: 252 PLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVD 311
PL+Y+ L + P+L LNGGI T+DE L VM+GRAAY NP Y L D
Sbjct: 207 PLRYDVVRRLKSELPELAIVLNGGIQTLDEAERHL-SWCDGVMIGRAAYHNP-YLLAEAD 264
Query: 312 TAIYG 316
YG
Sbjct: 265 RRCYG 269
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 326 | |||
| PRK11815 | 333 | PRK11815, PRK11815, tRNA-dihydrouridine synthase A | 1e-130 | |
| TIGR00742 | 318 | TIGR00742, yjbN, tRNA dihydrouridine synthase A | 3e-95 | |
| cd02801 | 231 | cd02801, DUS_like_FMN, Dihydrouridine synthase-lik | 4e-79 | |
| COG0042 | 323 | COG0042, COG0042, tRNA-dihydrouridine synthase [Tr | 2e-66 | |
| pfam01207 | 309 | pfam01207, Dus, Dihydrouridine synthase (Dus) | 3e-53 | |
| TIGR00737 | 319 | TIGR00737, nifR3_yhdG, putative TIM-barrel protein | 4e-31 | |
| PRK10415 | 321 | PRK10415, PRK10415, tRNA-dihydrouridine synthase B | 1e-11 | |
| PRK10550 | 312 | PRK10550, PRK10550, tRNA-dihydrouridine synthase C | 4e-07 | |
| cd04740 | 296 | cd04740, DHOD_1B_like, Dihydroorotate dehydrogenas | 6e-06 | |
| TIGR01037 | 300 | TIGR01037, pyrD_sub1_fam, dihydroorotate dehydroge | 4e-05 | |
| PRK07259 | 301 | PRK07259, PRK07259, dihydroorotate dehydrogenase 1 | 4e-05 | |
| cd02911 | 233 | cd02911, arch_FMN, Archeal FMN-binding domain | 0.001 | |
| cd02810 | 289 | cd02810, DHOD_DHPD_FMN, Dihydroorotate dehydrogena | 0.003 | |
| cd04731 | 243 | cd04731, HisF, The cyclase subunit of imidazolegly | 0.004 |
| >gnl|CDD|236991 PRK11815, PRK11815, tRNA-dihydrouridine synthase A; Provisional | Back alignment and domain information |
|---|
Score = 373 bits (961), Expect = e-130
Identities = 130/267 (48%), Positives = 173/267 (64%), Gaps = 10/267 (3%)
Query: 61 MVARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAF 120
+ FSVAPMMDWTD H R RL+S+HA LYTEM+ II+ G+ +R LAF
Sbjct: 3 EKMSKLPSRRFSVAPMMDWTDRHCRYFHRLLSRHALLYTEMVTTGAIIH--GDRERLLAF 60
Query: 121 SPEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPK 180
PE+HP+ LQ+GGS+ +LA+A +LA + YDEINLN GCPS +V +G FG LM +P+
Sbjct: 61 DPEEHPVALQLGGSDPADLAEAAKLAEDWGYDEINLNVGCPSDRVQ-NGRFGACLMAEPE 119
Query: 181 FVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLN 240
V + + + ++PV+VK RIG+DD DSY LCDF+ V+ + FI+H+RKA L
Sbjct: 120 LVADCVKAMKDAVSIPVTVKHRIGIDDQDSYEFLCDFVDTVAE-AGCDTFIVHARKAWLK 178
Query: 241 GISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRK--GAHHVMVGRA 298
G+SP ENR IPPL Y+ Y L RDFP LT +NGGI T++E L+ G VM+GRA
Sbjct: 179 GLSPKENREIPPLDYDRVYRLKRDFPHLTIEINGGIKTLEEAKEHLQHVDG---VMIGRA 235
Query: 299 AYQNPWYTLGHVDTAIYGAPSSGLTRR 325
AY NP+ L VD ++G P+ L+R
Sbjct: 236 AYHNPYL-LAEVDRELFGEPAPPLSRS 261
|
Length = 333 |
| >gnl|CDD|129825 TIGR00742, yjbN, tRNA dihydrouridine synthase A | Back alignment and domain information |
|---|
Score = 284 bits (729), Expect = 3e-95
Identities = 125/254 (49%), Positives = 165/254 (64%), Gaps = 6/254 (2%)
Query: 71 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 130
FSVAPM+DWTD H+R RL+SKH LYTEM+ A+ II+ G+ L FSPE+ P+ LQ
Sbjct: 3 FSVAPMLDWTDRHFRYFLRLLSKHTLLYTEMITAKAIIH--GDKKDILKFSPEESPVALQ 60
Query: 131 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 190
+GGS+ ++LAK ++A YDEINLN GCPS +V +G FG LM + V + + +
Sbjct: 61 LGGSDPNDLAKCAKIAEKRGYDEINLNVGCPSDRVQ-NGNFGACLMGNADLVADCVKAMQ 119
Query: 191 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 250
N+PV+VK RIG+D DSY LCDF+ VS ++FI+H+RKA L+G+SP ENR I
Sbjct: 120 EAVNIPVTVKHRIGIDPLDSYEFLCDFVEIVSGKG-CQNFIVHARKAWLSGLSPKENREI 178
Query: 251 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 310
PPL+YE Y L +DFP LT +NGGI +++ L VMVGR AY+NP Y L +V
Sbjct: 179 PPLRYERVYQLKKDFPHLTIEINGGIKNSEQIKQHLSH-VDGVMVGREAYENP-YLLANV 236
Query: 311 DTAIYGAPSSGLTR 324
D I+ LTR
Sbjct: 237 DREIFNETDEILTR 250
|
This model represents one branch of COG0042 (Predicted TIM-barrel enzymes, possibly dehydrogenases, nifR3 family). It represents a distinct subset by a set of shared unique motifs, a conserved pattern of insertions/deletions relative to other nifR3 homologs, and by subclustering based on cross-genome bidirectional best hits. Members are found in species as diverse as the proteobacteria, a spirochete, a cyanobacterium, and Deinococcus radiodurans. NifR3 itself, a protein of unknown function associated with nitrogen regulation in Rhodobacter capsulatus, is not a member of this branch. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase [Protein synthesis, tRNA and rRNA base modification]. Length = 318 |
| >gnl|CDD|239200 cd02801, DUS_like_FMN, Dihydrouridine synthase-like (DUS-like) FMN-binding domain | Back alignment and domain information |
|---|
Score = 240 bits (615), Expect = 4e-79
Identities = 70/235 (29%), Positives = 117/235 (49%), Gaps = 16/235 (6%)
Query: 71 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 130
+APM+ TD +R L R +YTEM++A+ ++ R L +PE+ P+++Q
Sbjct: 2 LILAPMVGVTDLPFRLLCRRYG-ADLVYTEMISAKALLRGNRKRLRLLTRNPEERPLIVQ 60
Query: 131 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 190
+GGS+ + LA+A ++ D I+LN GCPSPKV G G +L+ DP+ V E + +
Sbjct: 61 LGGSDPETLAEAAKIVEELGADGIDLNMGCPSPKVT-KGGAGAALLKDPELVAEIVRAVR 119
Query: 191 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 250
+PV+VK R+G DD + + + + + +H R E R
Sbjct: 120 EAVPIPVTVKIRLGWDDEE---ETLELAKALED-AGASALTVHGRT--------REQRYS 167
Query: 251 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRK-GAHHVMVGRAAYQNPW 304
P ++Y +++ + NG I ++++ L + G VM+GR A NPW
Sbjct: 168 GPADWDYIAE-IKEAVSIPVIANGDIFSLEDALRCLEQTGVDGVMIGRGALGNPW 221
|
Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present. Length = 231 |
| >gnl|CDD|223120 COG0042, COG0042, tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 211 bits (538), Expect = 2e-66
Identities = 77/240 (32%), Positives = 124/240 (51%), Gaps = 14/240 (5%)
Query: 67 LPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHP 126
L +APM TD +R LAR + + LYTEM++A+ +++ + L E+ P
Sbjct: 9 LRNRVILAPMAGVTDLPFRRLARELGAYDLLYTEMVSAKALLHGRKKFLLLLDELEEERP 68
Query: 127 IVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAM 186
+ +Q+GGS+ + LA+A ++A D I+LNCGCPSPKV G G +L+ +P+ + E +
Sbjct: 69 VAVQLGGSDPELLAEAAKIAEELGADIIDLNCGCPSPKVVKGG-AGAALLKNPELLAEIV 127
Query: 187 S-VIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPA 245
++ A ++PV+VK R+G DD D L I ++ + +H R + PA
Sbjct: 128 KAMVEAVGDIPVTVKIRLGWDDDDI---LALEIARILEDAGADALTVHGRTRAQGYLGPA 184
Query: 246 ENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRK-GAHHVMVGRAAYQNPW 304
+ ++Y L P + NG I ++++ L GA VM+GR A NPW
Sbjct: 185 D--------WDYIKELKEAVPSIPVIANGDIKSLEDAKEMLEYTGADGVMIGRGALGNPW 236
|
Length = 323 |
| >gnl|CDD|216365 pfam01207, Dus, Dihydrouridine synthase (Dus) | Back alignment and domain information |
|---|
Score = 176 bits (449), Expect = 3e-53
Identities = 68/259 (26%), Positives = 108/259 (41%), Gaps = 20/259 (7%)
Query: 72 SVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQH--PIVL 129
+APM TD +R L R + TEM+ A+ + R L + P+ +
Sbjct: 1 LLAPMAGVTDLPFRRLVREYGAGDLVVTEMVTAKAQLR--PEKQRELMLPELEEPTPLAV 58
Query: 130 QIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVI 189
Q+GGS+ LA+A +L D I++N GCP+ KV G G +L+ DP V + + +
Sbjct: 59 QLGGSDPALLAEAAKLVADLGADIIDINMGCPAKKVTRGG-AGAALLRDPDLVAQIVKAV 117
Query: 190 AANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRT 249
++PV+VK RIG D +S+ + +V +H R + A+N
Sbjct: 118 VKAVDIPVTVKIRIGWD--ESHENAVEIARRVEDAGAQ-ALTVHGR-------TRAQNYE 167
Query: 250 IPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRK-GAHHVMVGRAAYQNPW--YT 306
P ++ + + + NG I ++ L GA VM+GR A NPW
Sbjct: 168 G-PADWDAIKQVKQAVS-IPVIANGDITDAEDAQRCLSYTGADGVMIGRGALGNPWLFAE 225
Query: 307 LGHVDTAIYGAPSSGLTRR 325
V T +
Sbjct: 226 QHTVKTGEFDPRPPLAEEA 244
|
Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 from Saccharomyces cerevisiae acts on pre-tRNA-Phe, while Dus 2 acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD. Some family members may be targeted to the mitochondria and even have a role in mitochondria. Length = 309 |
| >gnl|CDD|129820 TIGR00737, nifR3_yhdG, putative TIM-barrel protein, nifR3 family | Back alignment and domain information |
|---|
Score = 118 bits (298), Expect = 4e-31
Identities = 68/234 (29%), Positives = 110/234 (47%), Gaps = 19/234 (8%)
Query: 74 APMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGG 133
APM TD+ +R L EM+++E I+Y R L + ++ PI +Q+ G
Sbjct: 13 APMAGVTDSPFRRLVAEYGA-GLTVCEMVSSEAIVYDSQRTMRLLDIAEDETPISVQLFG 71
Query: 134 SNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT 193
S+ D +A+A ++ D I++N GCP PK+ G G +L+ DP +G+ + +
Sbjct: 72 SDPDTMAEAAKINEELGADIIDINMGCPVPKITKKGA-GSALLRDPDLIGKIVKAVVDAV 130
Query: 194 NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKA--LLNGISPAENRTIP 251
++PV+VK RIG DD N +++ + + +H R +G A I
Sbjct: 131 DIPVTVKIRIGWDD-AHIN--AVEAARIAEDAGAQAVTLHGRTRAQGYSG--EANWDIIA 185
Query: 252 PLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAAL-RKGAHHVMVGRAAYQNPW 304
+K +R P + NG I + ++ A L G VM+GR A NPW
Sbjct: 186 RVK-----QAVR-IPVIG---NGDIFSPEDAKAMLETTGCDGVMIGRGALGNPW 230
|
This model represents one branch of COG0042 (Predicted TIM-barrel enzymes, possibly dehydrogenases, nifR3 family). This branch includes NifR3 itself, from Rhodobacter capsulatus. It excludes a broadly distributed but more sparsely populated subfamily that contains sll0926 from Synechocystis PCC6803, HI0634 from Haemophilus influenzae, and BB0225 from Borrelia burgdorferi. It also excludes a shorter and more distant archaeal subfamily.The function of nifR3, a member of this family, is unknown, but it is found in an operon with nitrogen-sensing two component regulators in Rhodobacter capsulatus.Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase [Unknown function, General]. Length = 319 |
| >gnl|CDD|182440 PRK10415, PRK10415, tRNA-dihydrouridine synthase B; Provisional | Back alignment and domain information |
|---|
Score = 64.2 bits (156), Expect = 1e-11
Identities = 61/241 (25%), Positives = 101/241 (41%), Gaps = 19/241 (7%)
Query: 67 LPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHP 126
L APM TD +RTL + +EM+++ +++ + E
Sbjct: 8 LRNRLIAAPMAGITDRPFRTLCYEMGA-GLTVSEMMSSNPQVWESDKSRLRMVHIDEPGI 66
Query: 127 IVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAM 186
+QI GS+ +A A + I++N GCP+ KV G +L+ P V +
Sbjct: 67 RTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKV-NRKLAGSALLQYPDLVKSIL 125
Query: 187 SVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIH--SRKALLNGISP 244
+ + +VPV++K R G ++ C I +++ + IH +R L NG
Sbjct: 126 TEVVNAVDVPVTLKIRTGWAPE---HRNCVEIAQLAEDCGIQALTIHGRTRACLFNG--E 180
Query: 245 AENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQNP 303
AE +I +K + ++ NG I + A L GA +M+GRAA P
Sbjct: 181 AEYDSIRAVKQKVSIPVIA---------NGDITDPLKARAVLDYTGADALMIGRAAQGRP 231
Query: 304 W 304
W
Sbjct: 232 W 232
|
Length = 321 |
| >gnl|CDD|236713 PRK10550, PRK10550, tRNA-dihydrouridine synthase C; Provisional | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 4e-07
Identities = 31/83 (37%), Positives = 47/83 (56%), Gaps = 9/83 (10%)
Query: 137 DNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFV---GEAMSVIAANT 193
+N A+A EL ++ D LNCGCPS V G G G +L+ DP+ + +AM A
Sbjct: 79 ENAARAVELG-SWGVD---LNCGCPSKTVNGSGG-GATLLKDPELIYQGAKAMRE-AVPA 132
Query: 194 NVPVSVKCRIGVDDHDSYNQLCD 216
++PV+VK R+G D + ++ D
Sbjct: 133 HLPVTVKVRLGWDSGERKFEIAD 155
|
Length = 312 |
| >gnl|CDD|240091 cd04740, DHOD_1B_like, Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain | Back alignment and domain information |
|---|
Score = 46.8 bits (112), Expect = 6e-06
Identities = 50/189 (26%), Positives = 80/189 (42%), Gaps = 23/189 (12%)
Query: 126 PIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEA 185
P++ I GS ++ + E D I LN CP+ K G++ DP+ V E
Sbjct: 91 PVIASIAGSTVEEFVEVAEKLADAGADAIELNISCPNVK-----GGGMAFGTDPEAVAEI 145
Query: 186 MSVIAANTNVPVSVKCRIGVDDHDSYNQLC-----DFIYKVSSLSPTRHFI-IHSRKALL 239
+ + T+VPV VK V D + D + +++L I I +RK +L
Sbjct: 146 VKAVKKATDVPVIVKLTPNVTDIVEIARAAEEAGADGLTLINTLKGMA--IDIETRKPIL 203
Query: 240 N----GIS-PAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVM 294
G+S PA I P+ Y + + ++ GGI + ++ L GA V
Sbjct: 204 GNVTGGLSGPA----IKPIALRMVYQVYKAV-EIPIIGVGGIASGEDALEFLMAGASAVQ 258
Query: 295 VGRAAYQNP 303
VG A + +P
Sbjct: 259 VGTANFVDP 267
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. Length = 296 |
| >gnl|CDD|130109 TIGR01037, pyrD_sub1_fam, dihydroorotate dehydrogenase (subfamily 1) family protein | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 4e-05
Identities = 48/189 (25%), Positives = 78/189 (41%), Gaps = 21/189 (11%)
Query: 126 PIVLQIGGSNLDNLAKATE-LANAYNY-DEINLNCGCPSPKVAGHGCFGVSLMLDPKFVG 183
P++ + GS+++ A+ E L A Y D LN CP K G +++ DP+
Sbjct: 92 PLIASVYGSSVEEFAEVAEKLEKAPPYVDAYELNLSCPHVKGGG-----IAIGQDPELSA 146
Query: 184 EAMSVIAANTNVPVSVKCRIGVDDHDSYNQLC-----DFIYKVSSLSPTRHFIIHSRKAL 238
+ + + T+VPV K V D + D + +++L + I + L
Sbjct: 147 DVVKAVKDKTDVPVFAKLSPNVTDITEIAKAAEEAGADGLTLINTLRGMKIDIKTGKPIL 206
Query: 239 LN---GIS-PAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVM 294
N G+S PA I P+ Y + + D+ GGI + ++ L GA V
Sbjct: 207 ANKTGGLSGPA----IKPIALRMVYDVYKMV-DIPIIGVGGITSFEDALEFLMAGASAVQ 261
Query: 295 VGRAAYQNP 303
VG A Y
Sbjct: 262 VGTAVYYRG 270
|
This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase. Length = 300 |
| >gnl|CDD|235982 PRK07259, PRK07259, dihydroorotate dehydrogenase 1B; Reviewed | Back alignment and domain information |
|---|
Score = 44.0 bits (105), Expect = 4e-05
Identities = 29/85 (34%), Positives = 39/85 (45%), Gaps = 10/85 (11%)
Query: 126 PIVLQIGGSNLDNLAK-ATELANAYNYDEINLNCGCPSPKVAGHGC--FGVSLMLDPKFV 182
PI+ + GS + A+ A +L+ A N D I LN CP+ HG FG DP+
Sbjct: 93 PIIANVAGSTEEEYAEVAEKLSKAPNVDAIELNISCPN---VKHGGMAFGT----DPELA 145
Query: 183 GEAMSVIAANTNVPVSVKCRIGVDD 207
E + + VPV VK V D
Sbjct: 146 YEVVKAVKEVVKVPVIVKLTPNVTD 170
|
Length = 301 |
| >gnl|CDD|239237 cd02911, arch_FMN, Archeal FMN-binding domain | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 0.001
Identities = 41/167 (24%), Positives = 63/167 (37%), Gaps = 24/167 (14%)
Query: 133 GSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAAN 192
S+L+ L A L + +N C P++ G G +L+ DP+ + E + +
Sbjct: 81 SSSLEPLLNAAALVAKNA-AILEINAHCRQPEMVEAGA-GEALLKDPERLSEFIKALKE- 137
Query: 193 TNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPP 252
T VPVSVK R GVD +L I K + IIH + P
Sbjct: 138 TGVPVSVKIRAGVD--VDDEELARLIEKAGAD------IIHV-------------DAMDP 176
Query: 253 LKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAA 299
+ + +L N + T++ GA V V RA+
Sbjct: 177 GNHADLKKIRDISTELFIIGNNSVTTIESAKEMFSYGADMVSVARAS 223
|
This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown. Length = 233 |
| >gnl|CDD|239204 cd02810, DHOD_DHPD_FMN, Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain | Back alignment and domain information |
|---|
Score = 38.5 bits (90), Expect = 0.003
Identities = 49/196 (25%), Positives = 79/196 (40%), Gaps = 30/196 (15%)
Query: 126 PIVLQIGGSNLDN---LAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFV 182
P++ +GGS+ ++ LA+ E A A E+NL+C P V G G L DP+ V
Sbjct: 100 PLIASVGGSSKEDYVELARKIERAGAK-ALELNLSC----PNVGG----GRQLGQDPEAV 150
Query: 183 GEAMSVIAANTNVPVSVKCRIGVDDHD------SYNQL-CDFIYKVSSLSPTRHFI---- 231
+ + A ++P+ VK D D + + D + ++++S R
Sbjct: 151 ANLLKAVKAAVDIPLLVKLSPYFDLEDIVELAKAAERAGADGLTAINTISG-RVVDLKTV 209
Query: 232 IHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLN--GGINTVDEVNAALRKG 289
K G+S A R PL + L L + GGI++ ++V L G
Sbjct: 210 GPGPKRGTGGLSGAPIR---PLALRWVARLAARLQ-LDIPIIGVGGIDSGEDVLEMLMAG 265
Query: 290 AHHVMVGRAAYQNPWY 305
A V V A +
Sbjct: 266 ASAVQVATALMWDGPD 281
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue. Length = 289 |
| >gnl|CDD|240082 cd04731, HisF, The cyclase subunit of imidazoleglycerol phosphate synthase (HisF) | Back alignment and domain information |
|---|
Score = 37.8 bits (89), Expect = 0.004
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 270 FTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNP 303
T+ GGI ++++ LR GA V + AA +NP
Sbjct: 74 LTVGGGIRSLEDARRLLRAGADKVSINSAAVENP 107
|
Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4- carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria. Length = 243 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 326 | |||
| TIGR00742 | 318 | yjbN tRNA dihydrouridine synthase A. Members of th | 100.0 | |
| PRK11815 | 333 | tRNA-dihydrouridine synthase A; Provisional | 100.0 | |
| COG0042 | 323 | tRNA-dihydrouridine synthase [Translation, ribosom | 100.0 | |
| PRK10550 | 312 | tRNA-dihydrouridine synthase C; Provisional | 100.0 | |
| PRK10415 | 321 | tRNA-dihydrouridine synthase B; Provisional | 100.0 | |
| PRK13523 | 337 | NADPH dehydrogenase NamA; Provisional | 100.0 | |
| COG1902 | 363 | NemA NADH:flavin oxidoreductases, Old Yellow Enzym | 100.0 | |
| TIGR00737 | 319 | nifR3_yhdG putative TIM-barrel protein, nifR3 fami | 100.0 | |
| cd04734 | 343 | OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN | 100.0 | |
| KOG2335 | 358 | consensus tRNA-dihydrouridine synthase [Translatio | 100.0 | |
| PF01207 | 309 | Dus: Dihydrouridine synthase (Dus); InterPro: IPR0 | 100.0 | |
| cd02930 | 353 | DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-bindin | 100.0 | |
| cd04735 | 353 | OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN | 100.0 | |
| cd02931 | 382 | ER_like_FMN Enoate reductase (ER)-like FMN-binding | 100.0 | |
| cd02929 | 370 | TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) | 100.0 | |
| cd04733 | 338 | OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN | 100.0 | |
| cd02801 | 231 | DUS_like_FMN Dihydrouridine synthase-like (DUS-lik | 100.0 | |
| cd04747 | 361 | OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN | 100.0 | |
| PF00724 | 341 | Oxidored_FMN: NADH:flavin oxidoreductase / NADH ox | 100.0 | |
| cd02933 | 338 | OYE_like_FMN Old yellow enzyme (OYE)-like FMN bind | 100.0 | |
| cd02803 | 327 | OYE_like_FMN_family Old yellow enzyme (OYE)-like F | 100.0 | |
| cd02932 | 336 | OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN | 100.0 | |
| PLN02411 | 391 | 12-oxophytodienoate reductase | 100.0 | |
| PRK10605 | 362 | N-ethylmaleimide reductase; Provisional | 100.0 | |
| PRK08255 | 765 | salicylyl-CoA 5-hydroxylase; Reviewed | 100.0 | |
| cd02911 | 233 | arch_FMN Archeal FMN-binding domain. This family o | 100.0 | |
| TIGR01037 | 300 | pyrD_sub1_fam dihydroorotate dehydrogenase (subfam | 100.0 | |
| cd04740 | 296 | DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) c | 100.0 | |
| PRK07259 | 301 | dihydroorotate dehydrogenase 1B; Reviewed | 99.97 | |
| TIGR00736 | 231 | nifR3_rel_arch TIM-barrel protein, putative. Membe | 99.97 | |
| KOG2333 | 614 | consensus Uncharacterized conserved protein [Gener | 99.96 | |
| cd02810 | 289 | DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) | 99.96 | |
| cd02940 | 299 | DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FM | 99.96 | |
| cd04741 | 294 | DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) c | 99.95 | |
| PRK08318 | 420 | dihydropyrimidine dehydrogenase subunit B; Validat | 99.95 | |
| cd04739 | 325 | DHOD_like Dihydroorotate dehydrogenase (DHOD) like | 99.94 | |
| PRK05286 | 344 | dihydroorotate dehydrogenase 2; Reviewed | 99.94 | |
| cd04738 | 327 | DHOD_2_like Dihydroorotate dehydrogenase (DHOD) cl | 99.94 | |
| PRK07565 | 334 | dihydroorotate dehydrogenase 2; Reviewed | 99.93 | |
| PRK02506 | 310 | dihydroorotate dehydrogenase 1A; Reviewed | 99.92 | |
| PLN02495 | 385 | oxidoreductase, acting on the CH-CH group of donor | 99.92 | |
| COG0167 | 310 | PyrD Dihydroorotate dehydrogenase [Nucleotide tran | 99.91 | |
| TIGR01036 | 335 | pyrD_sub2 dihydroorotate dehydrogenase, subfamily | 99.91 | |
| KOG2334 | 477 | consensus tRNA-dihydrouridine synthase [Translatio | 99.88 | |
| PF01180 | 295 | DHO_dh: Dihydroorotate dehydrogenase; InterPro: IP | 99.87 | |
| cd02809 | 299 | alpha_hydroxyacid_oxid_FMN Family of homologous FM | 99.86 | |
| PLN02826 | 409 | dihydroorotate dehydrogenase | 99.86 | |
| TIGR02151 | 333 | IPP_isom_2 isopentenyl-diphosphate delta-isomerase | 99.83 | |
| PRK05437 | 352 | isopentenyl pyrophosphate isomerase; Provisional | 99.82 | |
| cd02811 | 326 | IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl di | 99.81 | |
| KOG0134 | 400 | consensus NADH:flavin oxidoreductase/12-oxophytodi | 99.79 | |
| TIGR01304 | 369 | IMP_DH_rel_2 IMP dehydrogenase family protein. Thi | 99.79 | |
| TIGR03151 | 307 | enACPred_II putative enoyl-(acyl-carrier-protein) | 99.74 | |
| PRK08649 | 368 | inosine 5-monophosphate dehydrogenase; Validated | 99.66 | |
| cd04730 | 236 | NPD_like 2-Nitropropane dioxygenase (NPD), one of | 99.64 | |
| PF03060 | 330 | NMO: Nitronate monooxygenase; InterPro: IPR004136 | 99.63 | |
| cd00381 | 325 | IMPDH IMPDH: The catalytic domain of the inosine m | 99.63 | |
| cd04722 | 200 | TIM_phosphate_binding TIM barrel proteins share a | 99.59 | |
| PRK04180 | 293 | pyridoxal biosynthesis lyase PdxS; Provisional | 99.58 | |
| cd04743 | 320 | NPD_PKS 2-Nitropropane dioxygenase (NPD)-like doma | 99.55 | |
| cd02922 | 344 | FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding dom | 99.55 | |
| KOG1436 | 398 | consensus Dihydroorotate dehydrogenase [Nucleotide | 99.51 | |
| COG2070 | 336 | Dioxygenases related to 2-nitropropane dioxygenase | 99.5 | |
| cd04742 | 418 | NPD_FabD 2-Nitropropane dioxygenase (NPD)-like dom | 99.47 | |
| TIGR02708 | 367 | L_lactate_ox L-lactate oxidase. Members of this pr | 99.47 | |
| PRK05458 | 326 | guanosine 5'-monophosphate oxidoreductase; Provisi | 99.45 | |
| TIGR02814 | 444 | pfaD_fam PfaD family protein. The protein PfaD is | 99.44 | |
| cd04737 | 351 | LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding d | 99.43 | |
| PRK06843 | 404 | inosine 5-monophosphate dehydrogenase; Validated | 99.4 | |
| cd02808 | 392 | GltS_FMN Glutamate synthase (GltS) FMN-binding dom | 99.39 | |
| PLN02535 | 364 | glycolate oxidase | 99.37 | |
| cd04736 | 361 | MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-bin | 99.36 | |
| PF01070 | 356 | FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR | 99.35 | |
| PRK14024 | 241 | phosphoribosyl isomerase A; Provisional | 99.32 | |
| PRK11197 | 381 | lldD L-lactate dehydrogenase; Provisional | 99.31 | |
| TIGR01306 | 321 | GMP_reduct_2 guanosine monophosphate reductase, ba | 99.3 | |
| PLN02979 | 366 | glycolate oxidase | 99.28 | |
| cd03332 | 383 | LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-bindin | 99.24 | |
| PLN02493 | 367 | probable peroxisomal (S)-2-hydroxy-acid oxidase | 99.24 | |
| PF00478 | 352 | IMPDH: IMP dehydrogenase / GMP reductase domain; I | 99.14 | |
| TIGR00343 | 287 | pyridoxal 5'-phosphate synthase, synthase subunit | 99.12 | |
| cd04731 | 243 | HisF The cyclase subunit of imidazoleglycerol phos | 99.11 | |
| PTZ00314 | 495 | inosine-5'-monophosphate dehydrogenase; Provisiona | 99.11 | |
| PLN02274 | 505 | inosine-5'-monophosphate dehydrogenase | 99.11 | |
| PRK13585 | 241 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 99.08 | |
| PRK01033 | 258 | imidazole glycerol phosphate synthase subunit HisF | 99.08 | |
| cd04732 | 234 | HisA HisA. Phosphoribosylformimino-5-aminoimidazol | 99.07 | |
| PRK00748 | 233 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 99.04 | |
| TIGR00007 | 230 | phosphoribosylformimino-5-aminoimidazole carboxami | 99.04 | |
| TIGR03572 | 232 | WbuZ glycosyl amidation-associated protein WbuZ. T | 99.03 | |
| TIGR01302 | 450 | IMP_dehydrog inosine-5'-monophosphate dehydrogenas | 99.02 | |
| PRK00208 | 250 | thiG thiazole synthase; Reviewed | 98.98 | |
| cd04727 | 283 | pdxS PdxS is a subunit of the pyridoxal 5'-phospha | 98.98 | |
| TIGR01305 | 343 | GMP_reduct_1 guanosine monophosphate reductase, eu | 98.96 | |
| cd04728 | 248 | ThiG Thiazole synthase (ThiG) is the tetrameric en | 98.96 | |
| PRK02083 | 253 | imidazole glycerol phosphate synthase subunit HisF | 98.96 | |
| TIGR00735 | 254 | hisF imidazoleglycerol phosphate synthase, cyclase | 98.93 | |
| cd00331 | 217 | IGPS Indole-3-glycerol phosphate synthase (IGPS); | 98.92 | |
| KOG1799 | 471 | consensus Dihydropyrimidine dehydrogenase [Nucleot | 98.91 | |
| PRK05567 | 486 | inosine 5'-monophosphate dehydrogenase; Reviewed | 98.9 | |
| PF04131 | 192 | NanE: Putative N-acetylmannosamine-6-phosphate epi | 98.88 | |
| PRK05096 | 346 | guanosine 5'-monophosphate oxidoreductase; Provisi | 98.88 | |
| cd00945 | 201 | Aldolase_Class_I Class I aldolases. The class I al | 98.86 | |
| COG1304 | 360 | idi Isopentenyl diphosphate isomerase (BS_ypgA, MT | 98.86 | |
| PRK13125 | 244 | trpA tryptophan synthase subunit alpha; Provisiona | 98.84 | |
| COG0106 | 241 | HisA Phosphoribosylformimino-5-aminoimidazole carb | 98.82 | |
| PRK00278 | 260 | trpC indole-3-glycerol-phosphate synthase; Reviewe | 98.8 | |
| PRK01130 | 221 | N-acetylmannosamine-6-phosphate 2-epimerase; Provi | 98.79 | |
| COG0214 | 296 | SNZ1 Pyridoxine biosynthesis enzyme [Coenzyme meta | 98.76 | |
| cd04731 | 243 | HisF The cyclase subunit of imidazoleglycerol phos | 98.74 | |
| PF01645 | 368 | Glu_synthase: Conserved region in glutamate syntha | 98.73 | |
| PRK02083 | 253 | imidazole glycerol phosphate synthase subunit HisF | 98.73 | |
| cd04729 | 219 | NanE N-acetylmannosamine-6-phosphate epimerase (Na | 98.72 | |
| cd04732 | 234 | HisA HisA. Phosphoribosylformimino-5-aminoimidazol | 98.7 | |
| KOG0538 | 363 | consensus Glycolate oxidase [Energy production and | 98.64 | |
| TIGR00735 | 254 | hisF imidazoleglycerol phosphate synthase, cyclase | 98.61 | |
| PF05690 | 247 | ThiG: Thiazole biosynthesis protein ThiG; InterPro | 98.59 | |
| CHL00162 | 267 | thiG thiamin biosynthesis protein G; Validated | 98.58 | |
| TIGR00262 | 256 | trpA tryptophan synthase, alpha subunit. Tryptopha | 98.58 | |
| TIGR01769 | 205 | GGGP geranylgeranylglyceryl phosphate synthase. Th | 98.57 | |
| TIGR01304 | 369 | IMP_DH_rel_2 IMP dehydrogenase family protein. Thi | 98.53 | |
| PLN02446 | 262 | (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methy | 98.52 | |
| PF04481 | 242 | DUF561: Protein of unknown function (DUF561); Inte | 98.51 | |
| PRK08649 | 368 | inosine 5-monophosphate dehydrogenase; Validated | 98.47 | |
| PRK13587 | 234 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 98.46 | |
| TIGR01303 | 475 | IMP_DH_rel_1 IMP dehydrogenase family protein. Thi | 98.43 | |
| TIGR01919 | 243 | hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosy | 98.42 | |
| KOG1606 | 296 | consensus Stationary phase-induced protein, SOR/SN | 98.42 | |
| PF00977 | 229 | His_biosynth: Histidine biosynthesis protein; Inte | 98.41 | |
| COG0107 | 256 | HisF Imidazoleglycerol-phosphate synthase [Amino a | 98.4 | |
| PRK14114 | 241 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 98.38 | |
| TIGR01949 | 258 | AroFGH_arch predicted phospho-2-dehydro-3-deoxyhep | 98.37 | |
| cd03319 | 316 | L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase cat | 98.36 | |
| PRK00748 | 233 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 98.36 | |
| cd03316 | 357 | MR_like Mandelate racemase (MR)-like subfamily of | 98.36 | |
| cd00429 | 211 | RPE Ribulose-5-phosphate 3-epimerase (RPE). This e | 98.33 | |
| CHL00200 | 263 | trpA tryptophan synthase alpha subunit; Provisiona | 98.33 | |
| cd04724 | 242 | Tryptophan_synthase_alpha Ttryptophan synthase (TR | 98.31 | |
| TIGR01163 | 210 | rpe ribulose-phosphate 3-epimerase. This family co | 98.31 | |
| PRK07807 | 479 | inosine 5-monophosphate dehydrogenase; Validated | 98.31 | |
| PRK11840 | 326 | bifunctional sulfur carrier protein/thiazole synth | 98.3 | |
| TIGR03128 | 206 | RuMP_HxlA 3-hexulose-6-phosphate synthase. at the | 98.29 | |
| PRK07107 | 502 | inosine 5-monophosphate dehydrogenase; Validated | 98.29 | |
| TIGR03572 | 232 | WbuZ glycosyl amidation-associated protein WbuZ. T | 98.25 | |
| PRK00507 | 221 | deoxyribose-phosphate aldolase; Provisional | 98.24 | |
| TIGR01768 | 223 | GGGP-family geranylgeranylglyceryl phosphate synth | 98.23 | |
| PLN02591 | 250 | tryptophan synthase | 98.23 | |
| PRK04128 | 228 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 98.22 | |
| PLN02334 | 229 | ribulose-phosphate 3-epimerase | 98.21 | |
| TIGR00734 | 221 | hisAF_rel hisA/hisF family protein. This alignment | 98.19 | |
| PRK08883 | 220 | ribulose-phosphate 3-epimerase; Provisional | 98.19 | |
| PRK13586 | 232 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 98.18 | |
| cd00959 | 203 | DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of | 98.18 | |
| PRK13585 | 241 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 98.17 | |
| PRK14024 | 241 | phosphoribosyl isomerase A; Provisional | 98.17 | |
| TIGR00126 | 211 | deoC deoxyribose-phosphate aldolase. Deoxyribose-p | 98.16 | |
| PRK04169 | 232 | geranylgeranylglyceryl phosphate synthase-like pro | 98.16 | |
| PRK07695 | 201 | transcriptional regulator TenI; Provisional | 98.16 | |
| COG2022 | 262 | ThiG Uncharacterized enzyme of thiazole biosynthes | 98.15 | |
| PRK11750 | 1485 | gltB glutamate synthase subunit alpha; Provisional | 98.14 | |
| cd00958 | 235 | DhnA Class I fructose-1,6-bisphosphate (FBP) aldol | 98.14 | |
| TIGR00259 | 257 | thylakoid_BtpA membrane complex biogenesis protein | 98.13 | |
| PTZ00170 | 228 | D-ribulose-5-phosphate 3-epimerase; Provisional | 98.12 | |
| TIGR02129 | 253 | hisA_euk phosphoribosylformimino-5-aminoimidazole | 98.12 | |
| PRK13587 | 234 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 98.11 | |
| cd04723 | 233 | HisA_HisF Phosphoribosylformimino-5-aminoimidazole | 98.1 | |
| PRK05581 | 220 | ribulose-phosphate 3-epimerase; Validated | 98.1 | |
| COG3010 | 229 | NanE Putative N-acetylmannosamine-6-phosphate epim | 98.1 | |
| PRK13111 | 258 | trpA tryptophan synthase subunit alpha; Provisiona | 98.07 | |
| TIGR00007 | 230 | phosphoribosylformimino-5-aminoimidazole carboxami | 98.05 | |
| TIGR02129 | 253 | hisA_euk phosphoribosylformimino-5-aminoimidazole | 98.03 | |
| PF00218 | 254 | IGPS: Indole-3-glycerol phosphate synthase; InterP | 98.01 | |
| cd00564 | 196 | TMP_TenI Thiamine monophosphate synthase (TMP synt | 97.99 | |
| PF03437 | 254 | BtpA: BtpA family; InterPro: IPR005137 Photosystem | 97.99 | |
| PRK13307 | 391 | bifunctional formaldehyde-activating enzyme/3-hexu | 97.99 | |
| PRK09140 | 206 | 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; R | 97.98 | |
| cd00452 | 190 | KDPG_aldolase KDPG and KHG aldolase. This family b | 97.96 | |
| PF00977 | 229 | His_biosynth: Histidine biosynthesis protein; Inte | 97.96 | |
| PRK04128 | 228 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 97.96 | |
| PRK01033 | 258 | imidazole glycerol phosphate synthase subunit HisF | 97.96 | |
| cd03315 | 265 | MLE_like Muconate lactonizing enzyme (MLE) like su | 97.95 | |
| PRK08005 | 210 | epimerase; Validated | 97.94 | |
| KOG2550 | 503 | consensus IMP dehydrogenase/GMP reductase [Nucleot | 97.94 | |
| cd00405 | 203 | PRAI Phosphoribosylanthranilate isomerase (PRAI) c | 97.93 | |
| COG0069 | 485 | GltB Glutamate synthase domain 2 [Amino acid trans | 97.92 | |
| PRK14114 | 241 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 97.92 | |
| PRK07226 | 267 | fructose-bisphosphate aldolase; Provisional | 97.91 | |
| COG0036 | 220 | Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate | 97.9 | |
| TIGR00693 | 196 | thiE thiamine-phosphate pyrophosphorylase. This mo | 97.87 | |
| COG0159 | 265 | TrpA Tryptophan synthase alpha chain [Amino acid t | 97.85 | |
| PRK08745 | 223 | ribulose-phosphate 3-epimerase; Provisional | 97.85 | |
| TIGR01919 | 243 | hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosy | 97.84 | |
| PRK04302 | 223 | triosephosphate isomerase; Provisional | 97.83 | |
| cd02812 | 219 | PcrB_like PcrB_like proteins. One member of this f | 97.83 | |
| PLN02446 | 262 | (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methy | 97.82 | |
| cd04726 | 202 | KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxyl | 97.8 | |
| PRK06552 | 213 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 97.8 | |
| PRK13586 | 232 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 97.79 | |
| COG0434 | 263 | SgcQ Predicted TIM-barrel enzyme [General function | 97.74 | |
| PF01791 | 236 | DeoC: DeoC/LacD family aldolase; InterPro: IPR0029 | 97.74 | |
| PLN02460 | 338 | indole-3-glycerol-phosphate synthase | 97.73 | |
| COG1646 | 240 | Predicted phosphate-binding enzymes, TIM-barrel fo | 97.73 | |
| COG0106 | 241 | HisA Phosphoribosylformimino-5-aminoimidazole carb | 97.72 | |
| PRK06806 | 281 | fructose-bisphosphate aldolase; Provisional | 97.7 | |
| TIGR01182 | 204 | eda Entner-Doudoroff aldolase. 2-deydro-3-deoxypho | 97.69 | |
| PRK08227 | 264 | autoinducer 2 aldolase; Validated | 97.69 | |
| COG0274 | 228 | DeoC Deoxyribose-phosphate aldolase [Nucleotide tr | 97.68 | |
| PRK13957 | 247 | indole-3-glycerol-phosphate synthase; Provisional | 97.66 | |
| PLN02617 | 538 | imidazole glycerol phosphate synthase hisHF | 97.63 | |
| PF00290 | 259 | Trp_syntA: Tryptophan synthase alpha chain; InterP | 97.62 | |
| TIGR02317 | 285 | prpB methylisocitrate lyase. Members of this famil | 97.6 | |
| cd04723 | 233 | HisA_HisF Phosphoribosylformimino-5-aminoimidazole | 97.58 | |
| PRK13802 | 695 | bifunctional indole-3-glycerol phosphate synthase/ | 97.58 | |
| PRK00043 | 212 | thiE thiamine-phosphate pyrophosphorylase; Reviewe | 97.57 | |
| PRK07028 | 430 | bifunctional hexulose-6-phosphate synthase/ribonuc | 97.57 | |
| PRK07455 | 187 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 97.56 | |
| COG0352 | 211 | ThiE Thiamine monophosphate synthase [Coenzyme met | 97.55 | |
| PF01884 | 230 | PcrB: PcrB family; InterPro: IPR008205 This entry | 97.5 | |
| PRK03512 | 211 | thiamine-phosphate pyrophosphorylase; Provisional | 97.5 | |
| COG0107 | 256 | HisF Imidazoleglycerol-phosphate synthase [Amino a | 97.45 | |
| PRK02615 | 347 | thiamine-phosphate pyrophosphorylase; Provisional | 97.44 | |
| PRK05283 | 257 | deoxyribose-phosphate aldolase; Provisional | 97.44 | |
| cd00377 | 243 | ICL_PEPM Members of the ICL/PEPM enzyme family cat | 97.44 | |
| COG0269 | 217 | SgbH 3-hexulose-6-phosphate synthase and related p | 97.44 | |
| PLN02617 | 538 | imidazole glycerol phosphate synthase hisHF | 97.44 | |
| TIGR01859 | 282 | fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, | 97.4 | |
| COG0134 | 254 | TrpC Indole-3-glycerol phosphate synthase [Amino a | 97.39 | |
| COG1830 | 265 | FbaB DhnA-type fructose-1,6-bisphosphate aldolase | 97.36 | |
| PRK11320 | 292 | prpB 2-methylisocitrate lyase; Provisional | 97.3 | |
| PF00834 | 201 | Ribul_P_3_epim: Ribulose-phosphate 3 epimerase fam | 97.27 | |
| PRK07114 | 222 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 97.26 | |
| PRK07315 | 293 | fructose-bisphosphate aldolase; Provisional | 97.25 | |
| TIGR02319 | 294 | CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phos | 97.25 | |
| PRK06801 | 286 | hypothetical protein; Provisional | 97.23 | |
| PRK06512 | 221 | thiamine-phosphate pyrophosphorylase; Provisional | 97.22 | |
| TIGR01303 | 475 | IMP_DH_rel_1 IMP dehydrogenase family protein. Thi | 97.2 | |
| cd03329 | 368 | MR_like_4 Mandelate racemase (MR)-like subfamily o | 97.18 | |
| PRK07807 | 479 | inosine 5-monophosphate dehydrogenase; Validated | 97.17 | |
| PRK08091 | 228 | ribulose-phosphate 3-epimerase; Validated | 97.14 | |
| PRK06015 | 201 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 97.11 | |
| PRK06852 | 304 | aldolase; Validated | 97.08 | |
| PF02581 | 180 | TMP-TENI: Thiamine monophosphate synthase/TENI; In | 97.07 | |
| PF01081 | 196 | Aldolase: KDPG and KHG aldolase; InterPro: IPR0008 | 97.04 | |
| PF01680 | 208 | SOR_SNZ: SOR/SNZ family; InterPro: IPR001852 Snz1p | 97.02 | |
| PRK05848 | 273 | nicotinate-nucleotide pyrophosphorylase; Provision | 96.99 | |
| PRK09722 | 229 | allulose-6-phosphate 3-epimerase; Provisional | 96.99 | |
| PRK09427 | 454 | bifunctional indole-3-glycerol phosphate synthase/ | 96.96 | |
| TIGR02320 | 285 | PEP_mutase phosphoenolpyruvate phosphomutase. A cl | 96.95 | |
| PRK12858 | 340 | tagatose 1,6-diphosphate aldolase; Reviewed | 96.91 | |
| PRK05718 | 212 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 96.91 | |
| TIGR00734 | 221 | hisAF_rel hisA/hisF family protein. This alignment | 96.9 | |
| PRK09250 | 348 | fructose-bisphosphate aldolase; Provisional | 96.88 | |
| COG4981 | 717 | Enoyl reductase domain of yeast-type FAS1 [Lipid m | 96.88 | |
| PRK09517 | 755 | multifunctional thiamine-phosphate pyrophosphoryla | 96.87 | |
| PRK07428 | 288 | nicotinate-nucleotide pyrophosphorylase; Provision | 96.86 | |
| cd06556 | 240 | ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme sup | 96.66 | |
| PRK12290 | 437 | thiE thiamine-phosphate pyrophosphorylase; Reviewe | 96.62 | |
| cd03321 | 355 | mandelate_racemase Mandelate racemase (MR) catalyz | 96.61 | |
| PRK00230 | 230 | orotidine 5'-phosphate decarboxylase; Reviewed | 96.55 | |
| KOG3111 | 224 | consensus D-ribulose-5-phosphate 3-epimerase [Carb | 96.5 | |
| KOG2550 | 503 | consensus IMP dehydrogenase/GMP reductase [Nucleot | 96.48 | |
| PRK07565 | 334 | dihydroorotate dehydrogenase 2; Reviewed | 96.47 | |
| PRK14057 | 254 | epimerase; Provisional | 96.46 | |
| cd01568 | 269 | QPRTase_NadC Quinolinate phosphoribosyl transferas | 96.46 | |
| PF00478 | 352 | IMPDH: IMP dehydrogenase / GMP reductase domain; I | 96.45 | |
| TIGR02321 | 290 | Pphn_pyruv_hyd phosphonopyruvate hydrolase. This f | 96.45 | |
| TIGR00078 | 265 | nadC nicotinate-nucleotide pyrophosphorylase. Syno | 96.34 | |
| COG2513 | 289 | PrpB PEP phosphonomutase and related enzymes [Carb | 96.33 | |
| PRK08072 | 277 | nicotinate-nucleotide pyrophosphorylase; Provision | 96.29 | |
| PRK01222 | 210 | N-(5'-phosphoribosyl)anthranilate isomerase; Provi | 96.29 | |
| cd03325 | 352 | D-galactonate_dehydratase D-galactonate dehydratas | 96.26 | |
| PRK07998 | 283 | gatY putative fructose-1,6-bisphosphate aldolase; | 96.26 | |
| PRK08999 | 312 | hypothetical protein; Provisional | 96.25 | |
| cd03328 | 352 | MR_like_3 Mandelate racemase (MR)-like subfamily o | 96.18 | |
| cd01572 | 268 | QPRTase Quinolinate phosphoribosyl transferase (QA | 96.18 | |
| PLN02898 | 502 | HMP-P kinase/thiamin-monophosphate pyrophosphoryla | 96.16 | |
| COG2513 | 289 | PrpB PEP phosphonomutase and related enzymes [Carb | 96.14 | |
| cd00381 | 325 | IMPDH IMPDH: The catalytic domain of the inosine m | 96.12 | |
| cd00331 | 217 | IGPS Indole-3-glycerol phosphate synthase (IGPS); | 96.11 | |
| PRK14017 | 382 | galactonate dehydratase; Provisional | 96.11 | |
| TIGR02317 | 285 | prpB methylisocitrate lyase. Members of this famil | 96.06 | |
| cd03324 | 415 | rTSbeta_L-fuconate_dehydratase Human rTS beta is e | 96.06 | |
| PF13714 | 238 | PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB | 96.04 | |
| PTZ00314 | 495 | inosine-5'-monophosphate dehydrogenase; Provisiona | 96.04 | |
| PRK08185 | 283 | hypothetical protein; Provisional | 96.02 | |
| PRK05742 | 277 | nicotinate-nucleotide pyrophosphorylase; Provision | 96.02 | |
| PRK13813 | 215 | orotidine 5'-phosphate decarboxylase; Provisional | 96.0 | |
| PRK11320 | 292 | prpB 2-methylisocitrate lyase; Provisional | 96.0 | |
| PLN02424 | 332 | ketopantoate hydroxymethyltransferase | 95.92 | |
| cd04740 | 296 | DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) c | 95.92 | |
| TIGR02321 | 290 | Pphn_pyruv_hyd phosphonopyruvate hydrolase. This f | 95.92 | |
| cd03326 | 385 | MR_like_1 Mandelate racemase (MR)-like subfamily o | 95.92 | |
| cd06557 | 254 | KPHMT-like Ketopantoate hydroxymethyltransferase ( | 95.91 | |
| PRK07709 | 285 | fructose-bisphosphate aldolase; Provisional | 95.9 | |
| cd00377 | 243 | ICL_PEPM Members of the ICL/PEPM enzyme family cat | 95.89 | |
| PRK05096 | 346 | guanosine 5'-monophosphate oxidoreductase; Provisi | 95.87 | |
| PRK07084 | 321 | fructose-bisphosphate aldolase; Provisional | 95.8 | |
| PF04131 | 192 | NanE: Putative N-acetylmannosamine-6-phosphate epi | 95.78 | |
| TIGR01858 | 282 | tag_bisphos_ald class II aldolase, tagatose bispho | 95.71 | |
| PRK08610 | 286 | fructose-bisphosphate aldolase; Reviewed | 95.7 | |
| COG4948 | 372 | L-alanine-DL-glutamate epimerase and related enzym | 95.68 | |
| cd01573 | 272 | modD_like ModD; Quinolinate phosphoribosyl transfe | 95.65 | |
| PRK00311 | 264 | panB 3-methyl-2-oxobutanoate hydroxymethyltransfer | 95.61 | |
| cd00945 | 201 | Aldolase_Class_I Class I aldolases. The class I al | 95.6 | |
| cd03327 | 341 | MR_like_2 Mandelate racemase (MR)-like subfamily o | 95.59 | |
| PRK00311 | 264 | panB 3-methyl-2-oxobutanoate hydroxymethyltransfer | 95.52 | |
| TIGR01302 | 450 | IMP_dehydrog inosine-5'-monophosphate dehydrogenas | 95.51 | |
| cd06557 | 254 | KPHMT-like Ketopantoate hydroxymethyltransferase ( | 95.48 | |
| PRK12738 | 286 | kbaY tagatose-bisphosphate aldolase; Reviewed | 95.45 | |
| PRK15072 | 404 | bifunctional D-altronate/D-mannonate dehydratase; | 95.44 | |
| PRK09196 | 347 | fructose-1,6-bisphosphate aldolase; Reviewed | 95.43 | |
| PF01487 | 224 | DHquinase_I: Type I 3-dehydroquinase; InterPro: IP | 95.41 | |
| COG0800 | 211 | Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Ca | 95.39 | |
| PRK13306 | 216 | ulaD 3-keto-L-gulonate-6-phosphate decarboxylase; | 95.37 | |
| PLN02424 | 332 | ketopantoate hydroxymethyltransferase | 95.34 | |
| PF01729 | 169 | QRPTase_C: Quinolinate phosphoribosyl transferase, | 95.33 | |
| cd06556 | 240 | ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme sup | 95.32 | |
| PRK13399 | 347 | fructose-1,6-bisphosphate aldolase; Provisional | 95.3 | |
| TIGR01306 | 321 | GMP_reduct_2 guanosine monophosphate reductase, ba | 95.29 | |
| TIGR01521 | 347 | FruBisAldo_II_B fructose-bisphosphate aldolase, cl | 95.28 | |
| TIGR00222 | 263 | panB 3-methyl-2-oxobutanoate hydroxymethyltransfer | 95.26 | |
| cd03322 | 361 | rpsA The starvation sensing protein RpsA from E.co | 95.25 | |
| cd02810 | 289 | DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) | 95.25 | |
| TIGR00167 | 288 | cbbA ketose-bisphosphate aldolases. fructose-bisph | 95.24 | |
| TIGR02319 | 294 | CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phos | 95.23 | |
| PRK09195 | 284 | gatY tagatose-bisphosphate aldolase; Reviewed | 95.22 | |
| PF00701 | 289 | DHDPS: Dihydrodipicolinate synthetase family; Inte | 95.21 | |
| cd00947 | 276 | TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) a | 95.2 | |
| PRK08385 | 278 | nicotinate-nucleotide pyrophosphorylase; Provision | 95.2 | |
| PRK13397 | 250 | 3-deoxy-7-phosphoheptulonate synthase; Provisional | 95.18 | |
| PRK04147 | 293 | N-acetylneuraminate lyase; Provisional | 95.18 | |
| TIGR01305 | 343 | GMP_reduct_1 guanosine monophosphate reductase, eu | 95.16 | |
| TIGR01182 | 204 | eda Entner-Doudoroff aldolase. 2-deydro-3-deoxypho | 95.16 | |
| cd00408 | 281 | DHDPS-like Dihydrodipicolinate synthase family. A | 95.09 | |
| cd00408 | 281 | DHDPS-like Dihydrodipicolinate synthase family. A | 95.06 | |
| PRK12737 | 284 | gatY tagatose-bisphosphate aldolase; Reviewed | 95.03 | |
| COG0284 | 240 | PyrF Orotidine-5'-phosphate decarboxylase [Nucleot | 95.0 | |
| cd04725 | 216 | OMP_decarboxylase_like Orotidine 5'-phosphate deca | 95.0 | |
| PRK05835 | 307 | fructose-bisphosphate aldolase; Provisional | 94.97 | |
| PRK07896 | 289 | nicotinate-nucleotide pyrophosphorylase; Provision | 94.96 | |
| PRK06843 | 404 | inosine 5-monophosphate dehydrogenase; Validated | 94.96 | |
| PRK05458 | 326 | guanosine 5'-monophosphate oxidoreductase; Provisi | 94.91 | |
| PRK02227 | 238 | hypothetical protein; Provisional | 94.86 | |
| COG2876 | 286 | AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate ( | 94.85 | |
| PRK02412 | 253 | aroD 3-dehydroquinate dehydratase; Provisional | 94.84 | |
| cd03318 | 365 | MLE Muconate Lactonizing Enzyme (MLE), an homoocta | 94.84 | |
| TIGR02320 | 285 | PEP_mutase phosphoenolpyruvate phosphomutase. A cl | 94.84 | |
| TIGR01093 | 228 | aroD 3-dehydroquinate dehydratase, type I. Type II | 94.83 | |
| PRK07259 | 301 | dihydroorotate dehydrogenase 1B; Reviewed | 94.82 | |
| PRK12857 | 284 | fructose-1,6-bisphosphate aldolase; Reviewed | 94.81 | |
| PRK13957 | 247 | indole-3-glycerol-phosphate synthase; Provisional | 94.77 | |
| cd04722 | 200 | TIM_phosphate_binding TIM barrel proteins share a | 94.75 | |
| PF01081 | 196 | Aldolase: KDPG and KHG aldolase; InterPro: IPR0008 | 94.74 | |
| TIGR00222 | 263 | panB 3-methyl-2-oxobutanoate hydroxymethyltransfer | 94.62 | |
| PLN02274 | 505 | inosine-5'-monophosphate dehydrogenase | 94.58 | |
| cd03317 | 354 | NAAAR N-acylamino acid racemase (NAAAR), an octame | 94.48 | |
| PRK05567 | 486 | inosine 5'-monophosphate dehydrogenase; Reviewed | 94.43 | |
| cd04739 | 325 | DHOD_like Dihydroorotate dehydrogenase (DHOD) like | 94.42 | |
| TIGR01928 | 324 | menC_lowGC/arch o-succinylbenzoic acid (OSB) synth | 94.38 | |
| COG0135 | 208 | TrpF Phosphoribosylanthranilate isomerase [Amino a | 94.38 | |
| cd03323 | 395 | D-glucarate_dehydratase D-Glucarate dehydratase (G | 94.38 | |
| PRK05437 | 352 | isopentenyl pyrophosphate isomerase; Provisional | 94.36 | |
| TIGR02534 | 368 | mucon_cyclo muconate and chloromuconate cycloisome | 94.35 | |
| PRK06552 | 213 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 94.31 | |
| TIGR01334 | 277 | modD putative molybdenum utilization protein ModD. | 94.25 | |
| PRK06106 | 281 | nicotinate-nucleotide pyrophosphorylase; Provision | 94.24 | |
| TIGR03849 | 237 | arch_ComA phosphosulfolactate synthase. This model | 94.21 | |
| PRK15452 | 443 | putative protease; Provisional | 94.18 | |
| cd04729 | 219 | NanE N-acetylmannosamine-6-phosphate epimerase (Na | 94.15 | |
| cd03320 | 263 | OSBS o-Succinylbenzoate synthase (OSBS) catalyzes | 94.14 | |
| PRK06015 | 201 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 94.14 | |
| PF01116 | 287 | F_bP_aldolase: Fructose-bisphosphate aldolase clas | 94.12 | |
| PRK01130 | 221 | N-acetylmannosamine-6-phosphate 2-epimerase; Provi | 94.03 | |
| TIGR01361 | 260 | DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate | 94.02 | |
| PRK01261 | 229 | aroD 3-dehydroquinate dehydratase; Provisional | 93.97 | |
| COG0149 | 251 | TpiA Triosephosphate isomerase [Carbohydrate trans | 93.94 | |
| PF13714 | 238 | PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB | 93.92 | |
| PRK05718 | 212 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 93.82 | |
| cd00950 | 284 | DHDPS Dihydrodipicolinate synthase (DHDPS) is a ke | 93.71 | |
| cd00952 | 309 | CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate | 93.68 | |
| COG1954 | 181 | GlpP Glycerol-3-phosphate responsive antiterminato | 93.57 | |
| PRK11572 | 248 | copper homeostasis protein CutC; Provisional | 93.54 | |
| TIGR01740 | 213 | pyrF orotidine 5'-phosphate decarboxylase, subfami | 93.52 | |
| TIGR03128 | 206 | RuMP_HxlA 3-hexulose-6-phosphate synthase. at the | 93.45 | |
| cd00951 | 289 | KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also | 93.41 | |
| COG0800 | 211 | Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Ca | 93.41 | |
| PRK07114 | 222 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 93.4 | |
| PRK09016 | 296 | quinolinate phosphoribosyltransferase; Validated | 93.4 | |
| TIGR03247 | 441 | glucar-dehydr glucarate dehydratase. Glucarate deh | 93.36 | |
| PRK08673 | 335 | 3-deoxy-7-phosphoheptulonate synthase; Reviewed | 93.32 | |
| cd04726 | 202 | KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxyl | 93.29 | |
| cd00003 | 234 | PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase | 93.25 | |
| cd02809 | 299 | alpha_hydroxyacid_oxid_FMN Family of homologous FM | 93.18 | |
| COG1411 | 229 | Uncharacterized protein related to proFAR isomeras | 93.12 | |
| TIGR00683 | 290 | nanA N-acetylneuraminate lyase. N-acetylneuraminat | 93.04 | |
| PRK02714 | 320 | O-succinylbenzoate synthase; Provisional | 93.04 | |
| PRK06978 | 294 | nicotinate-nucleotide pyrophosphorylase; Provision | 93.01 | |
| COG0329 | 299 | DapA Dihydrodipicolinate synthase/N-acetylneuramin | 92.99 | |
| PRK09140 | 206 | 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; R | 92.98 | |
| cd00954 | 288 | NAL N-Acetylneuraminic acid aldolase, also called | 92.97 | |
| PRK06256 | 336 | biotin synthase; Validated | 92.94 | |
| PF02548 | 261 | Pantoate_transf: Ketopantoate hydroxymethyltransfe | 92.93 | |
| PRK06543 | 281 | nicotinate-nucleotide pyrophosphorylase; Provision | 92.92 | |
| PRK06096 | 284 | molybdenum transport protein ModD; Provisional | 92.88 | |
| PRK12595 | 360 | bifunctional 3-deoxy-7-phosphoheptulonate synthase | 92.87 | |
| PF04476 | 235 | DUF556: Protein of unknown function (DUF556); Inte | 92.82 | |
| PRK06559 | 290 | nicotinate-nucleotide pyrophosphorylase; Provision | 92.72 | |
| PF04309 | 175 | G3P_antiterm: Glycerol-3-phosphate responsive anti | 92.71 | |
| TIGR00674 | 285 | dapA dihydrodipicolinate synthase. Dihydrodipicoli | 92.65 | |
| cd02922 | 344 | FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding dom | 92.62 | |
| cd08210 | 364 | RLP_RrRLP Ribulose bisphosphate carboxylase like p | 92.6 | |
| PRK05265 | 239 | pyridoxine 5'-phosphate synthase; Provisional | 92.49 | |
| PRK03170 | 292 | dihydrodipicolinate synthase; Provisional | 92.4 | |
| PLN02334 | 229 | ribulose-phosphate 3-epimerase | 92.38 | |
| PF03932 | 201 | CutC: CutC family; InterPro: IPR005627 Copper tran | 92.28 | |
| PRK05286 | 344 | dihydroorotate dehydrogenase 2; Reviewed | 92.12 | |
| TIGR03586 | 327 | PseI pseudaminic acid synthase. | 92.04 | |
| cd00739 | 257 | DHPS DHPS subgroup of Pterin binding enzymes. DHPS | 92.03 | |
| PF03740 | 239 | PdxJ: Pyridoxal phosphate biosynthesis protein Pdx | 91.92 | |
| cd00311 | 242 | TIM Triosephosphate isomerase (TIM) is a glycolyti | 91.88 | |
| PRK13398 | 266 | 3-deoxy-7-phosphoheptulonate synthase; Provisional | 91.85 | |
| TIGR00559 | 237 | pdxJ pyridoxine 5'-phosphate synthase. PdxJ is req | 91.77 | |
| PRK11572 | 248 | copper homeostasis protein CutC; Provisional | 91.68 | |
| TIGR01037 | 300 | pyrD_sub1_fam dihydroorotate dehydrogenase (subfam | 91.62 | |
| PF09370 | 268 | TIM-br_sig_trns: TIM-barrel signal transduction pr | 91.62 | |
| cd08205 | 367 | RuBisCO_IV_RLP Ribulose bisphosphate carboxylase l | 91.6 | |
| PLN02716 | 308 | nicotinate-nucleotide diphosphorylase (carboxylati | 91.57 | |
| TIGR00674 | 285 | dapA dihydrodipicolinate synthase. Dihydrodipicoli | 91.57 | |
| PRK13396 | 352 | 3-deoxy-7-phosphoheptulonate synthase; Provisional | 91.56 | |
| TIGR03569 | 329 | NeuB_NnaB N-acetylneuraminate synthase. This famil | 91.55 | |
| TIGR03569 | 329 | NeuB_NnaB N-acetylneuraminate synthase. This famil | 91.46 | |
| TIGR02313 | 294 | HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic ac | 91.35 | |
| PRK03170 | 292 | dihydrodipicolinate synthase; Provisional | 91.31 | |
| cd00423 | 258 | Pterin_binding Pterin binding enzymes. This family | 91.27 | |
| PRK00278 | 260 | trpC indole-3-glycerol-phosphate synthase; Reviewe | 91.18 | |
| PTZ00333 | 255 | triosephosphate isomerase; Provisional | 91.16 | |
| PF02679 | 244 | ComA: (2R)-phospho-3-sulfolactate synthase (ComA); | 91.14 | |
| PRK12399 | 324 | tagatose 1,6-diphosphate aldolase; Reviewed | 91.04 | |
| PLN02535 | 364 | glycolate oxidase | 91.03 | |
| PRK15440 | 394 | L-rhamnonate dehydratase; Provisional | 90.99 | |
| PRK07107 | 502 | inosine 5-monophosphate dehydrogenase; Validated | 90.92 | |
| PF00809 | 210 | Pterin_bind: Pterin binding enzyme This Prosite en | 90.78 | |
| TIGR02151 | 333 | IPP_isom_2 isopentenyl-diphosphate delta-isomerase | 90.76 | |
| PRK03620 | 303 | 5-dehydro-4-deoxyglucarate dehydratase; Provisiona | 90.76 | |
| TIGR03249 | 296 | KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-deh | 90.76 | |
| cd08207 | 406 | RLP_NonPhot Ribulose bisphosphate carboxylase like | 90.71 | |
| TIGR03586 | 327 | PseI pseudaminic acid synthase. | 90.71 | |
| COG3684 | 306 | LacD Tagatose-1,6-bisphosphate aldolase [Carbohydr | 90.7 | |
| PRK09197 | 350 | fructose-bisphosphate aldolase; Provisional | 90.63 | |
| TIGR03326 | 412 | rubisco_III ribulose bisphosphate carboxylase, typ | 90.61 | |
| cd00954 | 288 | NAL N-Acetylneuraminic acid aldolase, also called | 90.6 | |
| COG0157 | 280 | NadC Nicotinate-nucleotide pyrophosphorylase [Coen | 90.58 | |
| PRK07094 | 323 | biotin synthase; Provisional | 90.52 | |
| cd02811 | 326 | IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl di | 90.47 | |
| cd00951 | 289 | KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also | 90.4 | |
| PLN02979 | 366 | glycolate oxidase | 90.4 | |
| PRK04147 | 293 | N-acetylneuraminate lyase; Provisional | 90.33 | |
| cd08209 | 391 | RLP_DK-MTP-1-P-enolase 2,3-diketo-5-methylthiopent | 90.32 | |
| KOG4201 | 289 | consensus Anthranilate synthase component II [Amin | 90.31 | |
| TIGR01927 | 307 | menC_gamma/gm+ o-succinylbenzoic acid (OSB) synthe | 90.29 | |
| TIGR03249 | 296 | KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-deh | 90.21 | |
| TIGR00433 | 296 | bioB biotin synthetase. Catalyzes the last step of | 90.1 | |
| TIGR03151 | 307 | enACPred_II putative enoyl-(acyl-carrier-protein) | 90.08 | |
| COG5016 | 472 | Pyruvate/oxaloacetate carboxyltransferase [Energy | 90.04 | |
| PRK03620 | 303 | 5-dehydro-4-deoxyglucarate dehydratase; Provisiona | 89.98 | |
| PRK14567 | 253 | triosephosphate isomerase; Provisional | 89.91 | |
| PF00697 | 197 | PRAI: N-(5'phosphoribosyl)anthranilate (PRA) isome | 89.9 | |
| COG0329 | 299 | DapA Dihydrodipicolinate synthase/N-acetylneuramin | 89.9 | |
| TIGR01036 | 335 | pyrD_sub2 dihydroorotate dehydrogenase, subfamily | 89.81 | |
| TIGR01520 | 357 | FruBisAldo_II_A fructose-bisphosphate aldolase, cl | 89.75 | |
| PLN02495 | 385 | oxidoreductase, acting on the CH-CH group of donor | 89.72 | |
| cd00946 | 345 | FBP_aldolase_IIA Class II Type A, Fructose-1,6-bis | 89.55 | |
| cd00452 | 190 | KDPG_aldolase KDPG and KHG aldolase. This family b | 89.48 | |
| cd00405 | 203 | PRAI Phosphoribosylanthranilate isomerase (PRAI) c | 89.31 | |
| cd03174 | 265 | DRE_TIM_metallolyase DRE-TIM metallolyase superfam | 89.29 | |
| PLN02493 | 367 | probable peroxisomal (S)-2-hydroxy-acid oxidase | 89.28 | |
| PF05853 | 272 | DUF849: Prokaryotic protein of unknown function (D | 89.27 | |
| TIGR00683 | 290 | nanA N-acetylneuraminate lyase. N-acetylneuraminat | 89.22 | |
| cd00956 | 211 | Transaldolase_FSA Transaldolase-like fructose-6-ph | 89.18 | |
| PLN02746 | 347 | hydroxymethylglutaryl-CoA lyase | 89.17 | |
| PRK13958 | 207 | N-(5'-phosphoribosyl)anthranilate isomerase; Provi | 89.11 | |
| COG0826 | 347 | Collagenase and related proteases [Posttranslation | 89.1 | |
| PRK13398 | 266 | 3-deoxy-7-phosphoheptulonate synthase; Provisional | 89.02 | |
| cd00950 | 284 | DHDPS Dihydrodipicolinate synthase (DHDPS) is a ke | 88.98 | |
| PRK04161 | 329 | tagatose 1,6-diphosphate aldolase; Reviewed | 88.93 | |
| PF00218 | 254 | IGPS: Indole-3-glycerol phosphate synthase; InterP | 88.9 | |
| TIGR02313 | 294 | HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic ac | 88.87 | |
| cd04743 | 320 | NPD_PKS 2-Nitropropane dioxygenase (NPD)-like doma | 88.85 | |
| PF03932 | 201 | CutC: CutC family; InterPro: IPR005627 Copper tran | 88.82 | |
| cd07938 | 274 | DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, | 88.77 | |
| PF00701 | 289 | DHDPS: Dihydrodipicolinate synthetase family; Inte | 88.61 | |
| PRK01222 | 210 | N-(5'-phosphoribosyl)anthranilate isomerase; Provi | 88.53 | |
| TIGR00284 | 499 | dihydropteroate synthase-related protein. This pro | 88.51 | |
| PRK00042 | 250 | tpiA triosephosphate isomerase; Provisional | 88.46 | |
| cd04737 | 351 | LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding d | 88.33 | |
| PRK12330 | 499 | oxaloacetate decarboxylase; Provisional | 88.3 | |
| PRK04452 | 319 | acetyl-CoA decarbonylase/synthase complex subunit | 88.22 | |
| TIGR01232 | 325 | lacD tagatose 1,6-diphosphate aldolase. This famil | 88.17 | |
| cd04733 | 338 | OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN | 88.05 | |
| PLN02460 | 338 | indole-3-glycerol-phosphate synthase | 88.03 |
| >TIGR00742 yjbN tRNA dihydrouridine synthase A | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-48 Score=363.88 Aligned_cols=243 Identities=49% Similarity=0.874 Sum_probs=212.9
Q ss_pred CcEEEccCCCCChHHHHHHHHHcCCCcEEEecceeeccccccccchhhhhhcCCCCCcEEEEecCCCHHHHHHHHHHHHH
Q 020423 69 PWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSNLDNLAKATELANA 148 (326)
Q Consensus 69 nrivlAPM~~~s~~~~r~~~~~~Gg~gli~te~~~~~~~~~~~~~~~~~~~~~~~~~piivQL~g~~~~~f~~aA~~a~~ 148 (326)
+++++|||+++||.+||.+++.+|+.++++|||++++.+.+...+ .++..++.+.|+++||+|+++++|+++|+.+.+
T Consensus 1 ~~~~lAPM~g~Td~~fR~l~~~~g~~~~~~TEMv~a~~l~~~~~~--~~l~~~~~e~p~~vQl~g~~p~~~~~aA~~~~~ 78 (318)
T TIGR00742 1 GRFSVAPMLDWTDRHFRYFLRLLSKHTLLYTEMITAKAIIHGDKK--DILKFSPEESPVALQLGGSDPNDLAKCAKIAEK 78 (318)
T ss_pred CCEEEECCCCCcCHHHHHHHHHhCCCCEEEeCCEEEhhhhccCHH--HHcccCCCCCcEEEEEccCCHHHHHHHHHHHHh
Confidence 579999999999999999999998779999999999998876543 566778889999999999999999999999999
Q ss_pred CCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCcc
Q 020423 149 YNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTR 228 (326)
Q Consensus 149 aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd 228 (326)
+|||+||||+|||.+++ ++++||++|+++|+++.+++++++++++.||+||+|.|+++.++.+++.+ +++.++++|+|
T Consensus 79 ~g~d~IDlN~GCP~~~v-~~~g~Gs~Ll~~p~~~~~iv~av~~~~~~PVsvKiR~g~~~~~~~~~~~~-~~~~l~~~G~~ 156 (318)
T TIGR00742 79 RGYDEINLNVGCPSDRV-QNGNFGACLMGNADLVADCVKAMQEAVNIPVTVKHRIGIDPLDSYEFLCD-FVEIVSGKGCQ 156 (318)
T ss_pred CCCCEEEEECCCCHHHh-CCCCeehHhhcCHHHHHHHHHHHHHHhCCCeEEEEecCCCCcchHHHHHH-HHHHHHHcCCC
Confidence 99999999999999865 45789999999999999999999999999999999999987655556655 45677889999
Q ss_pred EEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhCCchhHH
Q 020423 229 HFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLG 308 (326)
Q Consensus 229 ~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~dP~l~~~ 308 (326)
+|+||+|+...+|+++..++.+++.+|+.++++++..+++|||+||||.|++|+.++++ |||+|||||+++.|||+ +.
T Consensus 157 ~itvHgRt~~~qg~sg~~~~~~~~~~~~~i~~vk~~~~~ipVi~NGdI~s~~da~~~l~-g~dgVMigRgal~nP~i-f~ 234 (318)
T TIGR00742 157 NFIVHARKAWLSGLSPKENREIPPLRYERVYQLKKDFPHLTIEINGGIKNSEQIKQHLS-HVDGVMVGREAYENPYL-LA 234 (318)
T ss_pred EEEEeCCchhhcCCCccccccCCchhHHHHHHHHHhCCCCcEEEECCcCCHHHHHHHHh-CCCEEEECHHHHhCCHH-HH
Confidence 99999999755676665545567778999999888766899999999999999999996 89999999999999995 55
Q ss_pred hHHHhhhCC
Q 020423 309 HVDTAIYGA 317 (326)
Q Consensus 309 ~i~~~~~~~ 317 (326)
.+...+++.
T Consensus 235 ~~~~~l~~~ 243 (318)
T TIGR00742 235 NVDREIFNE 243 (318)
T ss_pred HHHHHhcCC
Confidence 666767654
|
Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. |
| >PRK11815 tRNA-dihydrouridine synthase A; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-48 Score=364.07 Aligned_cols=248 Identities=50% Similarity=0.904 Sum_probs=217.3
Q ss_pred cCCcEEEccCCCCChHHHHHHHHHcCCCcEEEecceeeccccccccchhhhhhcCCCCCcEEEEecCCCHHHHHHHHHHH
Q 020423 67 LPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSNLDNLAKATELA 146 (326)
Q Consensus 67 l~nrivlAPM~~~s~~~~r~~~~~~Gg~gli~te~~~~~~~~~~~~~~~~~~~~~~~~~piivQL~g~~~~~f~~aA~~a 146 (326)
.+|++++|||+++||.+||.+++..|+.++++|||++++.+.+.. ...++..++.+.|+++||+|++++.|+++|+++
T Consensus 9 ~~~~~~lAPM~g~td~~fR~~~~~~g~~~~~~temv~~~~l~~~~--~~~~l~~~~~e~p~~vQl~g~~p~~~~~aA~~~ 86 (333)
T PRK11815 9 PSRRFSVAPMMDWTDRHCRYFHRLLSRHALLYTEMVTTGAIIHGD--RERLLAFDPEEHPVALQLGGSDPADLAEAAKLA 86 (333)
T ss_pred CCCCEEEeCCCCCcCHHHHHHHHHhCCCCEEEECCEEeccccccC--HHHHhccCCCCCcEEEEEeCCCHHHHHHHHHHH
Confidence 567899999999999999999999997799999999999988765 456667788889999999999999999999999
Q ss_pred HHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHHHHhhhCC
Q 020423 147 NAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSP 226 (326)
Q Consensus 147 ~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~G 226 (326)
+++|||+||||+|||.++ .++|+||+++++|++++.++++++++++++||++|+|.++++..+.+++.+ +++.++++|
T Consensus 87 ~~~g~d~IdlN~gCP~~~-v~~~~~Gs~L~~~p~~~~eiv~avr~~v~~pVsvKiR~g~~~~~t~~~~~~-~~~~l~~aG 164 (333)
T PRK11815 87 EDWGYDEINLNVGCPSDR-VQNGRFGACLMAEPELVADCVKAMKDAVSIPVTVKHRIGIDDQDSYEFLCD-FVDTVAEAG 164 (333)
T ss_pred HhcCCCEEEEcCCCCHHH-ccCCCeeeHHhcCHHHHHHHHHHHHHHcCCceEEEEEeeeCCCcCHHHHHH-HHHHHHHhC
Confidence 999999999999999975 578999999999999999999999999999999999999877555555666 455678899
Q ss_pred ccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhCCchh
Q 020423 227 TRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYT 306 (326)
Q Consensus 227 vd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~dP~l~ 306 (326)
+|+|+||+|+.+..|+++..+..+++.+|+.++++++..+++|||+||||.|++|+.++++ |||+|||||+++.||| +
T Consensus 165 ~d~i~vh~Rt~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~iPVI~nGgI~s~eda~~~l~-~aDgVmIGRa~l~nP~-~ 242 (333)
T PRK11815 165 CDTFIVHARKAWLKGLSPKENREIPPLDYDRVYRLKRDFPHLTIEINGGIKTLEEAKEHLQ-HVDGVMIGRAAYHNPY-L 242 (333)
T ss_pred CCEEEEcCCchhhcCCCccccccCCCcCHHHHHHHHHhCCCCeEEEECCcCCHHHHHHHHh-cCCEEEEcHHHHhCCH-H
Confidence 9999999998766666655555677888999998887656899999999999999999997 6999999999999999 5
Q ss_pred HHhHHHhhhCCCCC
Q 020423 307 LGHVDTAIYGAPSS 320 (326)
Q Consensus 307 ~~~i~~~~~~~~~~ 320 (326)
++++...+++.+.+
T Consensus 243 ~~~~~~~~~~~~~~ 256 (333)
T PRK11815 243 LAEVDRELFGEPAP 256 (333)
T ss_pred HHHHHHHhcCCCCC
Confidence 66778877765543
|
|
| >COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-46 Score=353.93 Aligned_cols=239 Identities=31% Similarity=0.527 Sum_probs=209.7
Q ss_pred cccccCeecCCcEEEccCCCCChHHHHHHHHHcCCCcEEEecceeeccccccccchhhhhhcCCCCCcEEEEecCCCHHH
Q 020423 59 AEMVARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSNLDN 138 (326)
Q Consensus 59 p~~ig~~~l~nrivlAPM~~~s~~~~r~~~~~~Gg~gli~te~~~~~~~~~~~~~~~~~~~~~~~~~piivQL~g~~~~~ 138 (326)
+.+++.+.++||+++|||+++||.+||+++++.|+.++++|||+++..+.+..+.........+...|+++||+|++|+.
T Consensus 1 ~~~~~~~~~~~~~~lAPM~gvtd~~fR~l~~~~ga~~~~~TEmv~~~~~~~~~~~~~~~~~~~~~e~p~~vQl~gsdp~~ 80 (323)
T COG0042 1 MLKIGLIELRNRVILAPMAGVTDLPFRRLARELGAYDLLYTEMVSAKALLHGRKKFLLLLDELEEERPVAVQLGGSDPEL 80 (323)
T ss_pred CCccccccccCcEEEecCCCCccHHHHHHHHHhCCCceEEEccEEEhhhccCCcchhhhcCcCCCCCCEEEEecCCCHHH
Confidence 36789999999999999999999999999999885599999999999998877654444344456889999999999999
Q ss_pred HHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCC-CcEEEEeccCCCCCccHHHHHHH
Q 020423 139 LAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTN-VPVSVKCRIGVDDHDSYNQLCDF 217 (326)
Q Consensus 139 f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~-~pv~vK~r~g~~~~~~~~e~~~~ 217 (326)
++++|+.+.+.|+|+||||+|||.+++++.+ +|+.|+.+|+++.+++++++++++ +||+||+|+||++.+. ....
T Consensus 81 l~eaA~~~~~~g~~~IdlN~GCP~~~V~~~g-~Ga~Ll~~p~lv~~iv~a~~~av~~iPVTVKiRlG~d~~~~---~~~~ 156 (323)
T COG0042 81 LAEAAKIAEELGADIIDLNCGCPSPKVVKGG-AGAALLKNPELLAEIVKAMVEAVGDIPVTVKIRLGWDDDDI---LALE 156 (323)
T ss_pred HHHHHHHHHhcCCCEEeeeCCCChHHhcCCC-cchhhcCCHHHHHHHHHHHHHhhCCCCeEEEEecccCcccc---cHHH
Confidence 9999999999999999999999999877654 699999999999999999999995 9999999999988651 1223
Q ss_pred HHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHH-hCCChhhhh
Q 020423 218 IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVG 296 (326)
Q Consensus 218 ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~-~GaD~V~iG 296 (326)
+++.++++|++.++||+|+.++.+.+ +.+|+.++++++...++|||+||+|.|++++.++++ +|||+||+|
T Consensus 157 ia~~~~~~g~~~ltVHgRtr~~~y~~--------~ad~~~I~~vk~~~~~ipvi~NGdI~s~~~a~~~l~~tg~DgVMig 228 (323)
T COG0042 157 IARILEDAGADALTVHGRTRAQGYLG--------PADWDYIKELKEAVPSIPVIANGDIKSLEDAKEMLEYTGADGVMIG 228 (323)
T ss_pred HHHHHHhcCCCEEEEecccHHhcCCC--------ccCHHHHHHHHHhCCCCeEEeCCCcCCHHHHHHHHHhhCCCEEEEc
Confidence 67788899999999999998765533 367999999998875599999999999999999999 789999999
Q ss_pred HHHHhCCchhHHh
Q 020423 297 RAAYQNPWYTLGH 309 (326)
Q Consensus 297 Rall~dP~l~~~~ 309 (326)
|+++.|||+|...
T Consensus 229 Rga~~nP~l~~~i 241 (323)
T COG0042 229 RGALGNPWLFRQI 241 (323)
T ss_pred HHHccCCcHHHHH
Confidence 9999999976554
|
|
| >PRK10550 tRNA-dihydrouridine synthase C; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-45 Score=342.95 Aligned_cols=228 Identities=23% Similarity=0.345 Sum_probs=192.3
Q ss_pred cEEEccCCCCChHHHHHHHHHcCCCcEEEecceeeccccccccchhh---hhh---cCCCCCcEEEEecCCCHHHHHHHH
Q 020423 70 WFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDR---FLA---FSPEQHPIVLQIGGSNLDNLAKAT 143 (326)
Q Consensus 70 rivlAPM~~~s~~~~r~~~~~~Gg~gli~te~~~~~~~~~~~~~~~~---~~~---~~~~~~piivQL~g~~~~~f~~aA 143 (326)
++++|||+|+||.+||.++++.||+++++|||++++++....+.... .+. .++++.|+++||+|+++++|+++|
T Consensus 2 ~~~lAPMag~td~~fR~l~~~~g~~~~~~temvs~~~~~~~~~~~~~~~~~~~~~~~~~~e~p~~vQl~g~~p~~~~~aA 81 (312)
T PRK10550 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFLRVVDQLLPVKVFHRLCPELHNASRTPSGTLVRIQLLGQYPQWLAENA 81 (312)
T ss_pred CeEEECCCCCcCHHHHHHHHHhCCCCEEEeCCEEechhcccchhHHHHhHHhcccCCCCCCCcEEEEeccCCHHHHHHHH
Confidence 58999999999999999999999899999999999887765544322 222 456789999999999999999999
Q ss_pred HHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC--CCcEEEEeccCCCCCccHHHHHHHHHHH
Q 020423 144 ELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYNQLCDFIYKV 221 (326)
Q Consensus 144 ~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~--~~pv~vK~r~g~~~~~~~~e~~~~ia~~ 221 (326)
++++++|||+||||+|||.+.+.+.+ +|+.|+++++++.++++++++++ ++||+||+|.|+++.+. ..+ +++.
T Consensus 82 ~~~~~~g~d~IdiN~GCP~~~v~~~g-~Gs~Ll~~~~~~~eiv~avr~~~~~~~pVsvKiR~g~~~~~~---~~~-~a~~ 156 (312)
T PRK10550 82 ARAVELGSWGVDLNCGCPSKTVNGSG-GGATLLKDPELIYQGAKAMREAVPAHLPVTVKVRLGWDSGER---KFE-IADA 156 (312)
T ss_pred HHHHHcCCCEEEEeCCCCchHHhcCC-CchHhhcCHHHHHHHHHHHHHhcCCCcceEEEEECCCCCchH---HHH-HHHH
Confidence 99999999999999999998776644 58899999999999999999988 49999999999865432 233 4667
Q ss_pred hhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHH-hCCChhhhhHHHH
Q 020423 222 SSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAY 300 (326)
Q Consensus 222 le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~-~GaD~V~iGRall 300 (326)
++++|+|+|+||+|+... ++++ ++.+|+.++++++.. ++|||+||||.|++++.++++ +|||+|||||+++
T Consensus 157 l~~~Gvd~i~Vh~Rt~~~-~y~g------~~~~~~~i~~ik~~~-~iPVi~nGdI~t~~da~~~l~~~g~DgVmiGRg~l 228 (312)
T PRK10550 157 VQQAGATELVVHGRTKED-GYRA------EHINWQAIGEIRQRL-TIPVIANGEIWDWQSAQQCMAITGCDAVMIGRGAL 228 (312)
T ss_pred HHhcCCCEEEECCCCCcc-CCCC------CcccHHHHHHHHhhc-CCcEEEeCCcCCHHHHHHHHhccCCCEEEEcHHhH
Confidence 789999999999998632 2222 234789998888764 999999999999999999997 8899999999999
Q ss_pred hCCchhHHhHH
Q 020423 301 QNPWYTLGHVD 311 (326)
Q Consensus 301 ~dP~l~~~~i~ 311 (326)
.|||+|. +++
T Consensus 229 ~nP~lf~-~~~ 238 (312)
T PRK10550 229 NIPNLSR-VVK 238 (312)
T ss_pred hCcHHHH-Hhh
Confidence 9999655 444
|
|
| >PRK10415 tRNA-dihydrouridine synthase B; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-44 Score=338.30 Aligned_cols=241 Identities=23% Similarity=0.353 Sum_probs=200.9
Q ss_pred ccccCeecCCcEEEccCCCCChHHHHHHHHHcCCCcEEEecceeeccccccccchhhhhhcCCCCCcEEEEecCCCHHHH
Q 020423 60 EMVARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSNLDNL 139 (326)
Q Consensus 60 ~~ig~~~l~nrivlAPM~~~s~~~~r~~~~~~Gg~gli~te~~~~~~~~~~~~~~~~~~~~~~~~~piivQL~g~~~~~f 139 (326)
++||+++++|++++|||+++||.+||.+++++| +|+++|||+++++..+..+.....+...++..|+++||+|+++++|
T Consensus 1 ~~i~~~~~~~~~~lAPM~g~td~~fR~l~~~~g-~~~~~temvs~~~~~~~~~~~~~~~~~~~~~~~~~vQl~g~~~~~~ 79 (321)
T PRK10415 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMG-AGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRTVQIAGSDPKEM 79 (321)
T ss_pred CccCCccCCCCEEecCCCCCCcHHHHHHHHHHC-CCEEEEccEEcchhhhcCHhHHHHhccCccCCCEEEEEeCCCHHHH
Confidence 368999999999999999999999999999998 5999999999987655444333333334556789999999999999
Q ss_pred HHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHH
Q 020423 140 AKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIY 219 (326)
Q Consensus 140 ~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia 219 (326)
+++|+++.+.|+|+||||+|||++++.+.+ +|+.++++|+++.++++++++++++|+++|+|.||++.. .+..+ ++
T Consensus 80 ~~aa~~~~~~g~d~IdlN~gCP~~~v~~~g-~Gs~ll~~p~~~~eiv~av~~a~d~pv~vKiR~G~~~~~--~~~~~-~a 155 (321)
T PRK10415 80 ADAARINVESGAQIIDINMGCPAKKVNRKL-AGSALLQYPDLVKSILTEVVNAVDVPVTLKIRTGWAPEH--RNCVE-IA 155 (321)
T ss_pred HHHHHHHHHCCCCEEEEeCCCCHHHHcCCC-cccHHhcCHHHHHHHHHHHHHhcCCceEEEEEccccCCc--chHHH-HH
Confidence 999999999999999999999997766655 599999999999999999999999999999999987632 22333 45
Q ss_pred HHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHH-hCCChhhhhHH
Q 020423 220 KVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRA 298 (326)
Q Consensus 220 ~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~-~GaD~V~iGRa 298 (326)
+.++++|+|+|+||+|+... .++ .+.+|+.++++++.. ++|||+||||.|++++.++++ +|||+||+||+
T Consensus 156 ~~le~~G~d~i~vh~rt~~~-~~~-------G~a~~~~i~~ik~~~-~iPVI~nGgI~s~~da~~~l~~~gadgVmiGR~ 226 (321)
T PRK10415 156 QLAEDCGIQALTIHGRTRAC-LFN-------GEAEYDSIRAVKQKV-SIPVIANGDITDPLKARAVLDYTGADALMIGRA 226 (321)
T ss_pred HHHHHhCCCEEEEecCcccc-ccC-------CCcChHHHHHHHHhc-CCcEEEeCCCCCHHHHHHHHhccCCCEEEEChH
Confidence 56788999999999987421 111 234589898888764 999999999999999999998 79999999999
Q ss_pred HHhCCchhHHhHHHhhh
Q 020423 299 AYQNPWYTLGHVDTAIY 315 (326)
Q Consensus 299 ll~dP~l~~~~i~~~~~ 315 (326)
++.|||+ .+++...+.
T Consensus 227 ~l~nP~i-f~~~~~~~~ 242 (321)
T PRK10415 227 AQGRPWI-FREIQHYLD 242 (321)
T ss_pred hhcCChH-HHHHHHHHh
Confidence 9999996 455665543
|
|
| >PRK13523 NADPH dehydrogenase NamA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-44 Score=337.53 Aligned_cols=263 Identities=13% Similarity=0.112 Sum_probs=204.2
Q ss_pred cCCccccccCeecCCcEEEccCCC---------CChHHHHHH-HHHcCCCcEEEecceeecccc---------ccccchh
Q 020423 55 LHTKAEMVARQYLPPWFSVAPMMD---------WTDNHYRTL-ARLISKHAWLYTEMLAAETII---------YQQGNLD 115 (326)
Q Consensus 55 ~l~~p~~ig~~~l~nrivlAPM~~---------~s~~~~r~~-~~~~Gg~gli~te~~~~~~~~---------~~~~~~~ 115 (326)
.||+|++||++++||||+++||.+ .|+.++++| .++.||+|||+||.+.+++.. +.++.+.
T Consensus 2 ~Lf~P~~ig~~~lkNRiv~apm~~~~~~~~~G~~t~~~~~~y~~rA~gG~GlIi~~~~~v~~~~~~~~~~~~~~~d~~i~ 81 (337)
T PRK13523 2 KLFSPYTIKDVTLKNRIVMSPMCMYSSENKDGKVTNFHLIHYGTRAAGQVGLVIVEATAVLPEGRISDKDLGIWDDEHIE 81 (337)
T ss_pred CCCCCeeECCEeeecccEecccccccccCCCCCCCHHHHHHHHHHHcCCCeEEEECCeEECccccCCCCceecCCHHHHH
Confidence 589999999999999999999953 356788888 556799999999998876432 2233333
Q ss_pred hhhh----cCCCCCcEEEEecCCC-----------------------------------HHHHHHHHHHHHHCCCCEEEe
Q 020423 116 RFLA----FSPEQHPIVLQIGGSN-----------------------------------LDNLAKATELANAYNYDEINL 156 (326)
Q Consensus 116 ~~~~----~~~~~~piivQL~g~~-----------------------------------~~~f~~aA~~a~~aG~d~Iei 156 (326)
.+.+ +|+.+.++++||++.. .++|+++|++++++|||+|||
T Consensus 82 ~~r~l~d~vh~~G~~i~~QL~H~G~~~~~~~~~~~ps~~~~~~~~~~p~~mt~eeI~~ii~~f~~aA~~a~~aGfDgVei 161 (337)
T PRK13523 82 GLHKLVTFIHDHGAKAAIQLAHAGRKAELEGDIVAPSAIPFDEKSKTPVEMTKEQIKETVLAFKQAAVRAKEAGFDVIEI 161 (337)
T ss_pred HHHHHHHHHHhcCCEEEEEccCCCCCCCCCCCccCCCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 3332 7889999999997520 368999999999999999999
Q ss_pred cCC---------CCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCC--CCCccHHHHHHHHHHHhhhC
Q 020423 157 NCG---------CPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGV--DDHDSYNQLCDFIYKVSSLS 225 (326)
Q Consensus 157 n~g---------~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~--~~~~~~~e~~~~ia~~le~~ 225 (326)
|++ ||.. |+|+|+|||+++||.||+.||+++||++++.||.+|++... ....+.+|..+ +++.+++.
T Consensus 162 h~ahGyLl~qFlSp~~-N~RtD~yGGslenR~Rf~~eii~~ir~~~~~~v~vRis~~d~~~~G~~~~e~~~-i~~~l~~~ 239 (337)
T PRK13523 162 HGAHGYLINEFLSPLS-NKRTDEYGGSPENRYRFLREIIDAVKEVWDGPLFVRISASDYHPGGLTVQDYVQ-YAKWMKEQ 239 (337)
T ss_pred ccccchHHHHhcCCcc-CCcCCCCCCCHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCCCCCCHHHHHH-HHHHHHHc
Confidence 998 7884 69999999999999999999999999999999999999731 11235666666 56677889
Q ss_pred CccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhC-CChhhhhHHHHhCCc
Q 020423 226 PTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKG-AHHVMVGRAAYQNPW 304 (326)
Q Consensus 226 Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~G-aD~V~iGRall~dP~ 304 (326)
|+|+|+||+++...... ...+...+++.+++++. +++||+++|+|.++++++++++.| ||+|++||++++||+
T Consensus 240 gvD~i~vs~g~~~~~~~-----~~~~~~~~~~~~~ik~~-~~ipVi~~G~i~~~~~a~~~l~~g~~D~V~~gR~~iadP~ 313 (337)
T PRK13523 240 GVDLIDVSSGAVVPARI-----DVYPGYQVPFAEHIREH-ANIATGAVGLITSGAQAEEILQNNRADLIFIGRELLRNPY 313 (337)
T ss_pred CCCEEEeCCCCCCCCCC-----CCCccccHHHHHHHHhh-cCCcEEEeCCCCCHHHHHHHHHcCCCChHHhhHHHHhCcc
Confidence 99999999886321000 00111235555665554 599999999999999999999966 999999999999999
Q ss_pred hhHHhHHHhhhCC-CCCCCCCCC
Q 020423 305 YTLGHVDTAIYGA-PSSGLTRRC 326 (326)
Q Consensus 305 l~~~~i~~~~~~~-~~~~~~~~~ 326 (326)
|++++.+.+-.. .++..+.+|
T Consensus 314 -~~~k~~~~~~~~~~~~~~~~~~ 335 (337)
T PRK13523 314 -FPRIAAKELGFEIEAPKQYERA 335 (337)
T ss_pred -HHHHHHHHcCCCCCCcchhhhc
Confidence 577776666555 343445555
|
|
| >COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-44 Score=338.82 Aligned_cols=262 Identities=16% Similarity=0.136 Sum_probs=200.2
Q ss_pred cccCCccccccCeecCCcEEEccCCC--------CChHHHHHH-HHHcCCCcEEEecceeecccc---------ccccch
Q 020423 53 IILHTKAEMVARQYLPPWFSVAPMMD--------WTDNHYRTL-ARLISKHAWLYTEMLAAETII---------YQQGNL 114 (326)
Q Consensus 53 ~~~l~~p~~ig~~~l~nrivlAPM~~--------~s~~~~r~~-~~~~Gg~gli~te~~~~~~~~---------~~~~~~ 114 (326)
+..||+|++||+++|||||+||||++ .++.+++|| .|+.||+||++||++.+++.. +.++++
T Consensus 3 ~~~LF~P~~lg~~~L~NRivmaPm~~~~a~~dG~pt~~~~~yy~~RA~gG~Glii~~~~~v~~~g~~~~~~~~l~~d~~i 82 (363)
T COG1902 3 MPKLFEPLKLGGLTLKNRIVMAPMTRNRATPDGLPTDLLAEYYAERAKGGAGLIITEATAVDPGGRGYPGQPGLWSDAQI 82 (363)
T ss_pred ccccCCCeeECCEEeccceeecCcccccccCCCCCCHHHHHHHHHHhcCCCCEEEEeeEeeCcccccCCCCCccCChhHh
Confidence 35699999999999999999999975 367888888 667889999999988776432 233334
Q ss_pred hhhhh----cCCCCCcEEEEecCCC----------------------------------------HHHHHHHHHHHHHCC
Q 020423 115 DRFLA----FSPEQHPIVLQIGGSN----------------------------------------LDNLAKATELANAYN 150 (326)
Q Consensus 115 ~~~~~----~~~~~~piivQL~g~~----------------------------------------~~~f~~aA~~a~~aG 150 (326)
..|.+ +|+++.++++||+|.. .++|++||++|++||
T Consensus 83 ~~~~~vt~avH~~G~~i~iQL~H~Gr~~~~~~~~~~~~vapS~~~~~~~~~~~pr~mt~~eI~~ii~~f~~AA~rA~~AG 162 (363)
T COG1902 83 PGLKRLTEAVHAHGAKIFIQLWHAGRKARASHPWLPSAVAPSAIPAPGGRRATPRELTEEEIEEVIEDFARAARRAKEAG 162 (363)
T ss_pred HHHHHHHHHHHhcCCeEEEEeccCcccccccccCCCcccCCCccccccCCCCCCccCCHHHHHHHHHHHHHHHHHHHHcC
Confidence 44443 7999999999998532 268999999999999
Q ss_pred CCEEEecCC---------CCCCcccCCCCccccccCCHHHHHHHHHHHHhcCC--CcEEEEeccCCC-C--CccHHHHHH
Q 020423 151 YDEINLNCG---------CPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTN--VPVSVKCRIGVD-D--HDSYNQLCD 216 (326)
Q Consensus 151 ~d~Iein~g---------~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~--~pv~vK~r~g~~-~--~~~~~e~~~ 216 (326)
||+||||.+ +|.. |+|+|+||||++||.||+.||+++||++++ +||.+|++.... + ..+.++..+
T Consensus 163 FDgVEIH~AhGYLi~qFlsp~t-N~RtD~YGGSlENR~Rf~~EVv~aVr~~vg~~~~vg~Rls~~d~~~~~g~~~~e~~~ 241 (363)
T COG1902 163 FDGVEIHGAHGYLLSQFLSPLT-NKRTDEYGGSLENRARFLLEVVDAVREAVGADFPVGVRLSPDDFFDGGGLTIEEAVE 241 (363)
T ss_pred CCEEEEeeccchHHHHhcCCcc-CCCCCccCCcHHHHHHHHHHHHHHHHHHhCCCceEEEEECccccCCCCCCCHHHHHH
Confidence 999999976 6774 699999999999999999999999999995 478888877422 1 234666666
Q ss_pred HHHHHhhhCC-ccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhC-CChhh
Q 020423 217 FIYKVSSLSP-TRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKG-AHHVM 294 (326)
Q Consensus 217 ~ia~~le~~G-vd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~G-aD~V~ 294 (326)
+++.+++.| +|+|+++++.....+... ...+.....+....+...++|||++|+|++++.++++++.| ||+|.
T Consensus 242 -la~~L~~~G~~d~i~vs~~~~~~~~~~~----~~~~~~~~~~a~~i~~~~~~pvi~~G~i~~~~~Ae~~l~~g~aDlVa 316 (363)
T COG1902 242 -LAKALEEAGLVDYIHVSEGGYERGGTIT----VSGPGYQVEFAARIKKAVRIPVIAVGGINDPEQAEEILASGRADLVA 316 (363)
T ss_pred -HHHHHHhcCCccEEEeecccccCCCCcc----ccccchhHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHcCCCCEEE
Confidence 677888999 799999976542211100 00022222333333343479999999999999999999987 99999
Q ss_pred hhHHHHhCCchhHHhHHHhhhCCCCCC
Q 020423 295 VGRAAYQNPWYTLGHVDTAIYGAPSSG 321 (326)
Q Consensus 295 iGRall~dP~l~~~~i~~~~~~~~~~~ 321 (326)
+||++|+||+ |.+++++..-...++|
T Consensus 317 ~gR~~ladP~-~~~k~~~g~~~~~~~~ 342 (363)
T COG1902 317 MGRPFLADPD-LVLKAAEGRELEIRPC 342 (363)
T ss_pred echhhhcCcc-HHHHHHcCCCcccccc
Confidence 9999999999 6777777554333333
|
|
| >TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-43 Score=334.82 Aligned_cols=239 Identities=26% Similarity=0.453 Sum_probs=203.8
Q ss_pred ccCeecCCcEEEccCCCCChHHHHHHHHHcCCCcEEEecceeeccccccccchhhhhhcCCCCCcEEEEecCCCHHHHHH
Q 020423 62 VARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSNLDNLAK 141 (326)
Q Consensus 62 ig~~~l~nrivlAPM~~~s~~~~r~~~~~~Gg~gli~te~~~~~~~~~~~~~~~~~~~~~~~~~piivQL~g~~~~~f~~ 141 (326)
||++.++|++++|||+++|+.+||.+++++| +++++|||++++.+.+..+....++..++++.|+++||+|+++++|++
T Consensus 1 ~~~~~~~~~l~lAPm~~~t~~~fR~l~~~~g-~~~~~temi~~~~l~~~~~~~~~~~~~~~~~~p~i~ql~g~~~~~~~~ 79 (319)
T TIGR00737 1 IGNIQLKSRVVLAPMAGVTDSPFRRLVAEYG-AGLTVCEMVSSEAIVYDSQRTMRLLDIAEDETPISVQLFGSDPDTMAE 79 (319)
T ss_pred CCCccCCCCEEecCCCCCCcHHHHHHHHHHC-CCEEEECCEEEhhhhcCCHHHHHHhhcCCccceEEEEEeCCCHHHHHH
Confidence 5889999999999999999999999999998 899999999999987766666666677888999999999999999999
Q ss_pred HHHHHHHCCCCEEEecCCCCCCcccCCCCcccc-ccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHHH
Q 020423 142 ATELANAYNYDEINLNCGCPSPKVAGHGCFGVS-LMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYK 220 (326)
Q Consensus 142 aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgs-l~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia~ 220 (326)
+|++++++|||+||||+|||.. .++++|||+ ++++++++.++++++++.+++||++|+|.|+++... +..+ +++
T Consensus 80 aa~~~~~~G~d~IelN~gcP~~--~~~~~~~Gs~l~~~~~~~~ei~~~vr~~~~~pv~vKir~g~~~~~~--~~~~-~a~ 154 (319)
T TIGR00737 80 AAKINEELGADIIDINMGCPVP--KITKKGAGSALLRDPDLIGKIVKAVVDAVDIPVTVKIRIGWDDAHI--NAVE-AAR 154 (319)
T ss_pred HHHHHHhCCCCEEEEECCCCHH--HhcCCCccchHhCCHHHHHHHHHHHHhhcCCCEEEEEEcccCCCcc--hHHH-HHH
Confidence 9999999999999999999963 566777776 689999999999999999999999999999865321 2233 455
Q ss_pred HhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHH-hCCChhhhhHHH
Q 020423 221 VSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAA 299 (326)
Q Consensus 221 ~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~-~GaD~V~iGRal 299 (326)
.++++|+|+|+||+++.. ++.+ .+.+|+.++++++.. ++|||+||||.|++++.++++ .|||+||+||++
T Consensus 155 ~l~~~G~d~i~vh~r~~~-~~~~-------~~~~~~~i~~i~~~~-~ipvi~nGgI~~~~da~~~l~~~gad~VmigR~~ 225 (319)
T TIGR00737 155 IAEDAGAQAVTLHGRTRA-QGYS-------GEANWDIIARVKQAV-RIPVIGNGDIFSPEDAKAMLETTGCDGVMIGRGA 225 (319)
T ss_pred HHHHhCCCEEEEEccccc-ccCC-------CchhHHHHHHHHHcC-CCcEEEeCCCCCHHHHHHHHHhhCCCEEEEChhh
Confidence 677899999999998642 2221 234688888887764 899999999999999999995 889999999999
Q ss_pred HhCCchhHHhHHHhhhC
Q 020423 300 YQNPWYTLGHVDTAIYG 316 (326)
Q Consensus 300 l~dP~l~~~~i~~~~~~ 316 (326)
+.||| +++++.+.+..
T Consensus 226 l~~P~-l~~~~~~~~~~ 241 (319)
T TIGR00737 226 LGNPW-LFRQIEQYLTT 241 (319)
T ss_pred hhCCh-HHHHHHHHHhC
Confidence 99999 46667666654
|
Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. |
| >cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-43 Score=337.29 Aligned_cols=265 Identities=15% Similarity=0.106 Sum_probs=201.5
Q ss_pred CCccccccCeecCCcEEEccCCC-------CChHHHHHHH-HHcCCCcEEEecceeecccc---------ccccchhhhh
Q 020423 56 HTKAEMVARQYLPPWFSVAPMMD-------WTDNHYRTLA-RLISKHAWLYTEMLAAETII---------YQQGNLDRFL 118 (326)
Q Consensus 56 l~~p~~ig~~~l~nrivlAPM~~-------~s~~~~r~~~-~~~Gg~gli~te~~~~~~~~---------~~~~~~~~~~ 118 (326)
||+|++||++++||||++|||.. .|+..+++|. ++.||+|||+||.+.+++.. +.+++++.+.
T Consensus 1 Lf~P~~i~~~~lkNRiv~apm~~~~~~~G~~t~~~~~~y~~~A~gG~GlIi~e~~~v~~~~~~~~~~~~l~~d~~i~~~~ 80 (343)
T cd04734 1 LLSPLQLGHLTLRNRIVSTAHATNYAEDGLPSERYIAYHEERARGGAGLIITEGSSVHPSDSPAFGNLNASDDEIIPGFR 80 (343)
T ss_pred CCCCeeeCCEEecCCeEECCcccccccCCCCCHHHHHHHHHHHhCCCCEEEEeeeeeCCcccCCCCccccCCHHHHHHHH
Confidence 79999999999999999999952 4788899884 56699999999999887432 2333333333
Q ss_pred h----cCCCCCcEEEEecCCC--------------------------------------HHHHHHHHHHHHHCCCCEEEe
Q 020423 119 A----FSPEQHPIVLQIGGSN--------------------------------------LDNLAKATELANAYNYDEINL 156 (326)
Q Consensus 119 ~----~~~~~~piivQL~g~~--------------------------------------~~~f~~aA~~a~~aG~d~Iei 156 (326)
+ +|+.+.++++||++.. .++|++||++++++|||+|||
T Consensus 81 ~l~~~vh~~g~~~~~Ql~H~G~~~~~~~~~~~~~~ps~~~~~~~~~~~~~mt~~eI~~ii~~f~~AA~ra~~aGfDgVei 160 (343)
T cd04734 81 RLAEAVHAHGAVIMIQLTHLGRRGDGDGSWLPPLAPSAVPEPRHRAVPKAMEEEDIEEIIAAFADAARRCQAGGLDGVEL 160 (343)
T ss_pred HHHHHHHhcCCeEEEeccCCCcCcCcccCCCcccCCCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 2 6889999999997410 368999999999999999999
Q ss_pred cCC---------CCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCC----ccHHHHHHHHHHHhh
Q 020423 157 NCG---------CPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDH----DSYNQLCDFIYKVSS 223 (326)
Q Consensus 157 n~g---------~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~----~~~~e~~~~ia~~le 223 (326)
|++ ||. .|+|+|+|||+++||.+++.||+++||++++.++.||+|+++++. .+.+|.++ +++.++
T Consensus 161 h~ahGyLl~qFlsp~-~N~RtD~yGGslenR~r~~~eiv~~ir~~vg~~~~v~iRl~~~~~~~~G~~~~e~~~-~~~~l~ 238 (343)
T cd04734 161 QAAHGHLIDQFLSPL-TNRRTDEYGGSLENRMRFLLEVLAAVRAAVGPDFIVGIRISGDEDTEGGLSPDEALE-IAARLA 238 (343)
T ss_pred ccccchHHHHhhCCC-cCCCCCcCCCCHHHHhHHHHHHHHHHHHHcCCCCeEEEEeehhhccCCCCCHHHHHH-HHHHHH
Confidence 994 676 468999999999999999999999999999888888888886553 34666666 567778
Q ss_pred hCC-ccEEEEecCCcccC-CCCc-CCcCCCC-CccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhC-CChhhhhHH
Q 020423 224 LSP-TRHFIIHSRKALLN-GISP-AENRTIP-PLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKG-AHHVMVGRA 298 (326)
Q Consensus 224 ~~G-vd~I~v~~~~~~~~-g~~~-~~~~~~~-~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~G-aD~V~iGRa 298 (326)
++| +|+|+||++..... +... ......+ ...++.++++++. +++|||++|+|.++++++++++.| ||+|++||+
T Consensus 239 ~~G~vd~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~-~~ipvi~~G~i~~~~~~~~~l~~~~~D~V~~gR~ 317 (343)
T cd04734 239 AEGLIDYVNVSAGSYYTLLGLAHVVPSMGMPPGPFLPLAARIKQA-VDLPVFHAGRIRDPAEAEQALAAGHADMVGMTRA 317 (343)
T ss_pred hcCCCCEEEeCCCCCCcccccccccCCCCCCcchhHHHHHHHHHH-cCCCEEeeCCCCCHHHHHHHHHcCCCCeeeecHH
Confidence 898 99999987643211 0000 0000111 1235666666555 599999999999999999999954 999999999
Q ss_pred HHhCCchhHHhHHHhhhCCCCCCCCCCC
Q 020423 299 AYQNPWYTLGHVDTAIYGAPSSGLTRRC 326 (326)
Q Consensus 299 ll~dP~l~~~~i~~~~~~~~~~~~~~~~ 326 (326)
+++||| |++++.+.... ....|++|
T Consensus 318 ~ladP~-l~~k~~~g~~~--~i~~C~~C 342 (343)
T cd04734 318 HIADPH-LVAKAREGRED--DIRPCIGC 342 (343)
T ss_pred hHhCcc-HHHHHHcCCcc--CcCcCcCC
Confidence 999999 56666663332 23345566
|
Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase. |
| >KOG2335 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-44 Score=330.88 Aligned_cols=222 Identities=39% Similarity=0.609 Sum_probs=201.9
Q ss_pred EEccCCCCChHHHHHHHHHcCCCcEEEecceeeccccccccchhhhhhcCCCCCcEEEEecCCCHHHHHHHHHHHHHCCC
Q 020423 72 SVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSNLDNLAKATELANAYNY 151 (326)
Q Consensus 72 vlAPM~~~s~~~~r~~~~~~Gg~gli~te~~~~~~~~~~~~~~~~~~~~~~~~~piivQL~g~~~~~f~~aA~~a~~aG~ 151 (326)
++|||+++|+.+||.++|.+ |+.+++|||+.++.+.++.+..+..+.+.++++|+|+|+.+++++.+.+||+++..++
T Consensus 22 i~APMvd~S~l~fR~L~R~y-~~~l~yTpMi~a~~fv~~ek~r~~~~st~~~D~PLIvQf~~ndp~~ll~Aa~lv~~y~- 99 (358)
T KOG2335|consen 22 IVAPMVDYSELAFRRLVRLY-GADLLYTPMIHAKTFVHSEKYRDSELSTSPEDRPLIVQFGGNDPENLLKAARLVQPYC- 99 (358)
T ss_pred ccCCcccccHHHHHHHHHHh-CCceEechHHHHHHHhcCccchhhhcccCCCCCceEEEEcCCCHHHHHHHHHHhhhhc-
Confidence 89999999999999999999 5999999999999998887777777788899999999999999999999999999998
Q ss_pred CEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEE
Q 020423 152 DEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFI 231 (326)
Q Consensus 152 d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~ 231 (326)
|+|+||||||+ .+.++++||+.|+.+++++.|++.++++.++.||++|||++.+.. ++.+ .++.++++|++.++
T Consensus 100 D~idlNcGCPq-~~a~~g~yGa~L~~~~eLv~e~V~~v~~~l~~pVs~KIRI~~d~~----kTvd-~ak~~e~aG~~~lt 173 (358)
T KOG2335|consen 100 DGIDLNCGCPQ-KVAKRGGYGAFLMDNPELVGEMVSAVRANLNVPVSVKIRIFVDLE----KTVD-YAKMLEDAGVSLLT 173 (358)
T ss_pred CcccccCCCCH-HHHhcCCccceeccCHHHHHHHHHHHHhhcCCCeEEEEEecCcHH----HHHH-HHHHHHhCCCcEEE
Confidence 99999999997 467789999999999999999999999999999999999985443 4444 35577899999999
Q ss_pred EecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHH-hCCChhhhhHHHHhCCchhH
Q 020423 232 IHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQNPWYTL 307 (326)
Q Consensus 232 v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~-~GaD~V~iGRall~dP~l~~ 307 (326)
||||+..+.|. ..+|.+|+.++.+++..+++|||+||+|.+.+|+..+++ +|||+||+||++|.||++|.
T Consensus 174 VHGRtr~~kg~------~~~pad~~~i~~v~~~~~~ipviaNGnI~~~~d~~~~~~~tG~dGVM~arglL~NPa~F~ 244 (358)
T KOG2335|consen 174 VHGRTREQKGL------KTGPADWEAIKAVRENVPDIPVIANGNILSLEDVERCLKYTGADGVMSARGLLYNPALFL 244 (358)
T ss_pred EecccHHhcCC------CCCCcCHHHHHHHHHhCcCCcEEeeCCcCcHHHHHHHHHHhCCceEEecchhhcCchhhc
Confidence 99999877764 236788999999998887799999999999999999999 99999999999999999983
|
|
| >PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-44 Score=335.32 Aligned_cols=224 Identities=30% Similarity=0.535 Sum_probs=170.7
Q ss_pred EEccCCCCChHHHHHHHHHcCCCcEEEecceeeccccccccchhhhhhcCCCCCcEEEEecCCCHHHHHHHHHHHHHCCC
Q 020423 72 SVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSNLDNLAKATELANAYNY 151 (326)
Q Consensus 72 vlAPM~~~s~~~~r~~~~~~Gg~gli~te~~~~~~~~~~~~~~~~~~~~~~~~~piivQL~g~~~~~f~~aA~~a~~aG~ 151 (326)
++|||+++||.+||.+++..|+.++++|||++++.+.+........+...+++.|+++||+|++++.++++|+.+.+.|+
T Consensus 1 ~LAPM~g~td~~fR~l~~~~g~~~~~~temi~a~~~~~~~~~~~~~~~~~~~~~p~~~Ql~g~~~~~~~~aa~~~~~~~~ 80 (309)
T PF01207_consen 1 ILAPMAGVTDLPFRRLCREFGADDLTYTEMISAKAILRSNKKTIRLLPFLPNERPLIVQLFGNDPEDLAEAAEIVAELGF 80 (309)
T ss_dssp -E---TTTSSHHHHHHHHCCTSSSBEE-S-EEHHHHHCT-HHHHHHS-GCC-T-TEEEEEE-S-HHHHHHHHHHHCCTT-
T ss_pred CccCCCCCchHHHHHHHHHHCCCeEEEcCCEEECcccccccceeecccccccccceeEEEeeccHHHHHHHHHhhhccCC
Confidence 58999999999999999999977799999999999888777666777778888999999999999999999999999999
Q ss_pred CEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEE
Q 020423 152 DEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFI 231 (326)
Q Consensus 152 d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~ 231 (326)
|+||||+|||.+.+.+.+ +|+.|+++|+.+.+++++++++++.||++|+|.|+++. .+++.+ +++.++++|+++|+
T Consensus 81 ~~IDlN~GCP~~~v~~~g-~Ga~Ll~~p~~~~~iv~~~~~~~~~pvsvKiR~g~~~~--~~~~~~-~~~~l~~~G~~~i~ 156 (309)
T PF01207_consen 81 DGIDLNMGCPAPKVTKGG-AGAALLKDPDLLAEIVKAVRKAVPIPVSVKIRLGWDDS--PEETIE-FARILEDAGVSAIT 156 (309)
T ss_dssp SEEEEEE---SHHHHHCT--GGGGGC-HHHHHHHHHHHHHH-SSEEEEEEESECT----CHHHHH-HHHHHHHTT--EEE
T ss_pred cEEeccCCCCHHHHhcCC-cChhhhcChHHhhHHHHhhhcccccceEEecccccccc--hhHHHH-HHHHhhhcccceEE
Confidence 999999999998877654 79999999999999999999999999999999998842 234445 35577889999999
Q ss_pred EecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHH-hCCChhhhhHHHHhCCchhHH
Q 020423 232 IHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQNPWYTLG 308 (326)
Q Consensus 232 v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~-~GaD~V~iGRall~dP~l~~~ 308 (326)
||+|+.... +..+.+|+.++++++.. ++|||+||||.|++|+.++++ +|||+||+||+++.|||+|.+
T Consensus 157 vH~Rt~~q~--------~~~~a~w~~i~~i~~~~-~ipvi~NGdI~s~~d~~~~~~~tg~dgvMigRgal~nP~lf~~ 225 (309)
T PF01207_consen 157 VHGRTRKQR--------YKGPADWEAIAEIKEAL-PIPVIANGDIFSPEDAERMLEQTGADGVMIGRGALGNPWLFRE 225 (309)
T ss_dssp EECS-TTCC--------CTS---HHHHHHCHHC--TSEEEEESS--SHHHHHHHCCCH-SSEEEESHHHCC-CCHHCH
T ss_pred EecCchhhc--------CCcccchHHHHHHhhcc-cceeEEcCccCCHHHHHHHHHhcCCcEEEEchhhhhcCHHhhh
Confidence 999986432 22356799999988776 799999999999999999998 699999999999999998875
|
Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y. |
| >cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-42 Score=327.70 Aligned_cols=260 Identities=15% Similarity=0.127 Sum_probs=196.3
Q ss_pred CCccccccCeecCCcEEEccCCC-------CChHHHHHH-HHHcCCCcEEEecceeeccc---------cccccchhhhh
Q 020423 56 HTKAEMVARQYLPPWFSVAPMMD-------WTDNHYRTL-ARLISKHAWLYTEMLAAETI---------IYQQGNLDRFL 118 (326)
Q Consensus 56 l~~p~~ig~~~l~nrivlAPM~~-------~s~~~~r~~-~~~~Gg~gli~te~~~~~~~---------~~~~~~~~~~~ 118 (326)
||+|++||+++|||||++|||.. .|+..++|| .++.||+|||+||.+.+++. .+.+++++.+.
T Consensus 1 lf~P~~ig~~~lkNRiv~~p~~~~~~~~~~~~~~~~~~y~~rA~gG~glii~~~~~v~~~~~~~~~~~~~~~~~~i~~~~ 80 (353)
T cd02930 1 LLSPLDLGFTTLRNRVLMGSMHTGLEELDDGIDRLAAFYAERARGGVGLIVTGGFAPNEAGKLGPGGPVLNSPRQAAGHR 80 (353)
T ss_pred CCCCeeECCEEEccccEeCCccccccCCCCCCHHHHHHHHHHhcCCceEEEEeeEEeCCcccCCCCCcccCCHHHHHHHH
Confidence 69999999999999999999962 378888888 45679999999999887643 22333344443
Q ss_pred h----cCCCCCcEEEEecCC----------------------------------CHHHHHHHHHHHHHCCCCEEEecCC-
Q 020423 119 A----FSPEQHPIVLQIGGS----------------------------------NLDNLAKATELANAYNYDEINLNCG- 159 (326)
Q Consensus 119 ~----~~~~~~piivQL~g~----------------------------------~~~~f~~aA~~a~~aG~d~Iein~g- 159 (326)
+ +|+.+.++++||++. -.++|+++|++++++|||+||||.+
T Consensus 81 ~l~~~vh~~g~~~~~QL~h~G~~~~~~~~~~ps~~~~~~~~~~p~~mt~~eI~~i~~~f~~aA~~a~~aGfDgVeih~ah 160 (353)
T cd02930 81 LITDAVHAEGGKIALQILHAGRYAYHPLCVAPSAIRAPINPFTPRELSEEEIEQTIEDFARCAALAREAGYDGVEIMGSE 160 (353)
T ss_pred HHHHHHHHcCCEEEeeccCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccc
Confidence 2 789999999999642 0378999999999999999999875
Q ss_pred --------CCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCC----ccHHHHHHHHHHHhhhCCc
Q 020423 160 --------CPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDH----DSYNQLCDFIYKVSSLSPT 227 (326)
Q Consensus 160 --------~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~----~~~~e~~~~ia~~le~~Gv 227 (326)
||.. |+|+|+|||+++||++++.|++++||++++.++.+++|++..+. .+.++..+ +++.++++|+
T Consensus 161 GyLl~qFlsp~~-N~RtD~yGGslenR~r~~~eiv~aIR~~vG~d~~v~iRi~~~D~~~~g~~~~e~~~-i~~~Le~~G~ 238 (353)
T cd02930 161 GYLINQFLAPRT-NKRTDEWGGSFENRMRFPVEIVRAVRAAVGEDFIIIYRLSMLDLVEGGSTWEEVVA-LAKALEAAGA 238 (353)
T ss_pred chHHHHhcCCcc-CCCcCccCCCHHHHhHHHHHHHHHHHHHcCCCceEEEEecccccCCCCCCHHHHHH-HHHHHHHcCC
Confidence 7874 69999999999999999999999999999777777777665432 25666666 5667889999
Q ss_pred cEEEEecCCcccCCCCcCCcCCCCCccHHH-HHHHHhcCCCceEEEeCCCCCHHHHHHHHHhC-CChhhhhHHHHhCCch
Q 020423 228 RHFIIHSRKALLNGISPAENRTIPPLKYEY-YYALLRDFPDLTFTLNGGINTVDEVNAALRKG-AHHVMVGRAAYQNPWY 305 (326)
Q Consensus 228 d~I~v~~~~~~~~g~~~~~~~~~~~~~~~~-i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~G-aD~V~iGRall~dP~l 305 (326)
|+|+|+.+.. ...........++..|.. ..+++ +.+++||+++|++.++++++++++.| +|+|++||++++|||
T Consensus 239 d~i~vs~g~~--e~~~~~~~~~~~~~~~~~~~~~ik-~~v~iPVi~~G~i~~~~~a~~~i~~g~~D~V~~gR~~l~dP~- 314 (353)
T cd02930 239 DILNTGIGWH--EARVPTIATSVPRGAFAWATAKLK-RAVDIPVIASNRINTPEVAERLLADGDADMVSMARPFLADPD- 314 (353)
T ss_pred CEEEeCCCcC--CCCCccccccCCchhhHHHHHHHH-HhCCCCEEEcCCCCCHHHHHHHHHCCCCChhHhhHHHHHCcc-
Confidence 9999975421 111110001112223433 34454 44599999999999999999999965 999999999999999
Q ss_pred hHHhHHHhhhCCCCCC
Q 020423 306 TLGHVDTAIYGAPSSG 321 (326)
Q Consensus 306 ~~~~i~~~~~~~~~~~ 321 (326)
|.+++.+......++|
T Consensus 315 ~~~k~~~g~~~~i~~C 330 (353)
T cd02930 315 FVAKAAAGRADEINTC 330 (353)
T ss_pred HHHHHHhCCcccCcCc
Confidence 5666666444344444
|
DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi |
| >cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-42 Score=327.78 Aligned_cols=258 Identities=15% Similarity=0.103 Sum_probs=197.8
Q ss_pred CCccccccC-eecCCcEEEccCCC--------CChHHHHHHHH-HcCCCcEEEecceeeccc---------cccccchhh
Q 020423 56 HTKAEMVAR-QYLPPWFSVAPMMD--------WTDNHYRTLAR-LISKHAWLYTEMLAAETI---------IYQQGNLDR 116 (326)
Q Consensus 56 l~~p~~ig~-~~l~nrivlAPM~~--------~s~~~~r~~~~-~~Gg~gli~te~~~~~~~---------~~~~~~~~~ 116 (326)
||+|++||+ ++|||||+++||.+ .|+.++.||.+ +.| +|||+||.+.+++. .+.++++..
T Consensus 1 Lf~P~~ig~g~~lkNRiv~apm~~~~~~~~G~~t~~~~~yy~~rA~g-~glIi~e~~~v~~~~~~~~~~~~~~~d~~i~~ 79 (353)
T cd04735 1 LFEPFTLKNGVTLKNRFVMAPMTTYSSNPDGTITDDELAYYQRRAGG-VGMVITGATYVSPSGIGFEGGFSADDDSDIPG 79 (353)
T ss_pred CCCCEEcCCCeEEeCcceecccccCccCCCCCCCHHHHHHHHHHhCC-CCEEEECceEECcccCcCCCCceecChhhhHH
Confidence 799999998 99999999999953 47888898854 556 99999999887643 223334444
Q ss_pred hhh----cCCCCCcEEEEecCCC----------------------------------------HHHHHHHHHHHHHCCCC
Q 020423 117 FLA----FSPEQHPIVLQIGGSN----------------------------------------LDNLAKATELANAYNYD 152 (326)
Q Consensus 117 ~~~----~~~~~~piivQL~g~~----------------------------------------~~~f~~aA~~a~~aG~d 152 (326)
|.+ +|+++.++++||++.. .++|+++|++++++|||
T Consensus 80 ~~~l~~~vh~~G~~i~~QL~h~G~~~~~~~~~~~~~~~ps~~~~~~~~~~~p~~mt~~eI~~ii~~f~~aA~~a~~aGfD 159 (353)
T cd04735 80 LRKLAQAIKSKGAKAILQIFHAGRMANPALVPGGDVVSPSAIAAFRPGAHTPRELTHEEIEDIIDAFGEATRRAIEAGFD 159 (353)
T ss_pred HHHHHHHHHhCCCeEEEEecCCCCCCCccccCCCceecCCCCcccCCCCCCCccCCHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 432 7999999999996410 26899999999999999
Q ss_pred EEEecCC---------CCCCcccCCCCccccccCCHHHHHHHHHHHHhcCC----CcEEEEeccCCCCC----ccHHHHH
Q 020423 153 EINLNCG---------CPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTN----VPVSVKCRIGVDDH----DSYNQLC 215 (326)
Q Consensus 153 ~Iein~g---------~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~----~pv~vK~r~g~~~~----~~~~e~~ 215 (326)
+||||++ ||.. |+|+|+|||+++||.||+.||+++||++++ .++.|++|++.++. .+.+|..
T Consensus 160 gVeih~ahGyLl~qFlsp~~-N~R~D~yGGslenR~r~~~eii~~vr~~vg~~~~~~~~v~~R~s~~~~~~~g~~~ee~~ 238 (353)
T cd04735 160 GVEIHGANGYLIQQFFSPHS-NRRTDEWGGSLENRMRFPLAVVKAVQEVIDKHADKDFILGYRFSPEEPEEPGIRMEDTL 238 (353)
T ss_pred EEEEccccchHHHHhcCCcc-CCCCcccCCcHHHHHHHHHHHHHHHHHHhccccCCCceEEEEECcccccCCCCCHHHHH
Confidence 9999986 7884 699999999999999999999999999987 56667777765432 2456666
Q ss_pred HHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcC-CCceEEEeCCCCCHHHHHHHHHhCCChhh
Q 020423 216 DFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF-PDLTFTLNGGINTVDEVNAALRKGAHHVM 294 (326)
Q Consensus 216 ~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~-~~iPVIa~GgI~s~~da~~~l~~GaD~V~ 294 (326)
+ +++.+++.|+|+|+||++....... ..+...+..+..+++.. .++|||++|||+|+++++++++.|||+|+
T Consensus 239 ~-i~~~L~~~GvD~I~Vs~g~~~~~~~------~~~~~~~~~~~~ik~~~~~~iPVi~~Ggi~t~e~ae~~l~~gaD~V~ 311 (353)
T cd04735 239 A-LVDKLADKGLDYLHISLWDFDRKSR------RGRDDNQTIMELVKERIAGRLPLIAVGSINTPDDALEALETGADLVA 311 (353)
T ss_pred H-HHHHHHHcCCCEEEeccCccccccc------cCCcchHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcCCChHH
Confidence 5 5667788999999999764321100 11111234444444332 37999999999999999999999999999
Q ss_pred hhHHHHhCCchhHHhHHHhhhCCCCCCCC
Q 020423 295 VGRAAYQNPWYTLGHVDTAIYGAPSSGLT 323 (326)
Q Consensus 295 iGRall~dP~l~~~~i~~~~~~~~~~~~~ 323 (326)
+||++++||+ |.+++........++|+.
T Consensus 312 ~gR~liadPd-l~~k~~~G~~~~ir~ci~ 339 (353)
T cd04735 312 IGRGLLVDPD-WVEKIKEGREDEINLEID 339 (353)
T ss_pred HhHHHHhCcc-HHHHHHcCChhhhhhcCC
Confidence 9999999999 677777755555556654
|
Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-41 Score=327.90 Aligned_cols=261 Identities=14% Similarity=0.157 Sum_probs=194.0
Q ss_pred CCccccccCeecCCcEEEccCCC---------CChHHHHHH-HHHcCCCcEEEecceeecccc------------ccc-c
Q 020423 56 HTKAEMVARQYLPPWFSVAPMMD---------WTDNHYRTL-ARLISKHAWLYTEMLAAETII------------YQQ-G 112 (326)
Q Consensus 56 l~~p~~ig~~~l~nrivlAPM~~---------~s~~~~r~~-~~~~Gg~gli~te~~~~~~~~------------~~~-~ 112 (326)
||+|++||+++||||+++|||.. .|+.++++| .++.||+|||+||.+.+++.. ..+ +
T Consensus 1 Lf~P~~ig~~~lkNRiv~apm~~~~~~~~dg~~t~~~~~yy~~rA~gG~GlIi~~~~~v~~~~~~~~~~~~~~~~~~~~~ 80 (382)
T cd02931 1 LFEPIKIGKVEIKNRFAMAPMGPLGLADNDGAFNQRGIDYYVERAKGGTGLIITGVTMVDNEIEQFPMPSLPCPTYNPTA 80 (382)
T ss_pred CCCCeeECCEEEeCCcEeCCcCcccccCCCCCCCHHHHHHHHHHhcCCCCEEEEEEEEeCCcccccCCCCccccccCCHH
Confidence 79999999999999999999953 366788888 456699999999998776431 111 1
Q ss_pred chhhhhh----cCCCCCcEEEEecCC----------------------------C-------------HHHHHHHHHHHH
Q 020423 113 NLDRFLA----FSPEQHPIVLQIGGS----------------------------N-------------LDNLAKATELAN 147 (326)
Q Consensus 113 ~~~~~~~----~~~~~~piivQL~g~----------------------------~-------------~~~f~~aA~~a~ 147 (326)
.++.+.+ +|+.+.++++||++. . .++|+++|++++
T Consensus 81 ~i~~~k~l~davh~~G~~i~~QL~H~~Gr~~~~~~~~~~~~~~ps~~~~~~~~~~~p~~mt~~eI~~ii~~f~~AA~ra~ 160 (382)
T cd02931 81 FIRTAKEMTERVHAYGTKIFLQLTAGFGRVCIPGFLGEDKPVAPSPIPNRWLPEITCRELTTEEVETFVGKFGESAVIAK 160 (382)
T ss_pred HhHHHHHHHHHHHHcCCEEEEEccCcCCCccCccccCCCCccCCCCCCCCcCCCCCCCcCCHHHHHHHHHHHHHHHHHHH
Confidence 2333322 789999999999642 0 267999999999
Q ss_pred HCCCCEEEecC---CC-------CCCcccCCCCccccccCCHHHHHHHHHHHHhcC--CCcEEEEeccC-----CC----
Q 020423 148 AYNYDEINLNC---GC-------PSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIG-----VD---- 206 (326)
Q Consensus 148 ~aG~d~Iein~---g~-------P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~--~~pv~vK~r~g-----~~---- 206 (326)
++|||+||||+ |+ |. .|+|+|+|||+++||++|+.||+++||+++ ++||.+|++.. ++
T Consensus 161 ~AGfDgVEih~ah~GyLl~qFLSp~-~N~RtDeyGGslenR~rf~~eii~~vr~~~g~~f~v~vri~~~~~~~~~~~~~~ 239 (382)
T cd02931 161 EAGFDGVEIHAVHEGYLLDQFTISL-FNKRTDKYGGSLENRLRFAIEIVEEIKARCGEDFPVSLRYSVKSYIKDLRQGAL 239 (382)
T ss_pred HcCCCEEEEeccccChHHHHhcCCc-cCCCCCcCCCCHHHHhHHHHHHHHHHHHhcCCCceEEEEEechhhccccccccc
Confidence 99999999998 53 55 469999999999999999999999999998 57899999852 10
Q ss_pred -------CCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCcc-HHHHHHHHhcCCCceEEEeCCCCC
Q 020423 207 -------DHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLK-YEYYYALLRDFPDLTFTLNGGINT 278 (326)
Q Consensus 207 -------~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~-~~~i~~i~~~~~~iPVIa~GgI~s 278 (326)
...+.++..+ +++.++++|+|+|+||+++.......... ...++.. +...+.+++. +++||+++|+|.+
T Consensus 240 ~~~~~~~~g~~~e~~~~-~~~~l~~~gvD~l~vs~g~~~~~~~~~~~-~~~~~~~~~~~~~~ik~~-~~~pvi~~G~i~~ 316 (382)
T cd02931 240 PGEEFQEKGRDLEEGLK-AAKILEEAGYDALDVDAGSYDAWYWNHPP-MYQKKGMYLPYCKALKEV-VDVPVIMAGRMED 316 (382)
T ss_pred cccccccCCCCHHHHHH-HHHHHHHhCCCEEEeCCCCCcccccccCC-ccCCcchhHHHHHHHHHH-CCCCEEEeCCCCC
Confidence 1124566665 56677889999999998763110000000 0112222 3444555544 5999999999999
Q ss_pred HHHHHHHHHhC-CChhhhhHHHHhCCchhHHhHHHhhhCCCCCC
Q 020423 279 VDEVNAALRKG-AHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSG 321 (326)
Q Consensus 279 ~~da~~~l~~G-aD~V~iGRall~dP~l~~~~i~~~~~~~~~~~ 321 (326)
+++++++++.| ||+|++||++++||+ |++++.+.......+|
T Consensus 317 ~~~~~~~l~~g~~D~V~~gR~~ladP~-l~~k~~~g~~~~i~~C 359 (382)
T cd02931 317 PELASEAINEGIADMISLGRPLLADPD-VVNKIRRGRFKNIRPC 359 (382)
T ss_pred HHHHHHHHHcCCCCeeeechHhHhCcc-HHHHHHcCCcccCcCC
Confidence 99999999965 999999999999999 5666666443334444
|
Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae. |
| >cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-41 Score=324.99 Aligned_cols=262 Identities=11% Similarity=0.081 Sum_probs=193.3
Q ss_pred ccccCCccccccCeecCCcEEEccCCC----CChHHH-HHH-HHHcCCCcEEEecceeecccc----------ccccchh
Q 020423 52 NIILHTKAEMVARQYLPPWFSVAPMMD----WTDNHY-RTL-ARLISKHAWLYTEMLAAETII----------YQQGNLD 115 (326)
Q Consensus 52 ~~~~l~~p~~ig~~~l~nrivlAPM~~----~s~~~~-r~~-~~~~Gg~gli~te~~~~~~~~----------~~~~~~~ 115 (326)
.+..||+|++||+++|||||++|||.. .++..+ .|+ .|+.||+|||+||.+.+++.. +++++++
T Consensus 4 ~~~~Lf~P~~ig~~~lkNRiv~apm~~~~~~~~~~~~~~y~~~rA~gG~GLIi~e~~~V~~~~~~~~~~~~~l~~d~~i~ 83 (370)
T cd02929 4 RHDILFEPIKIGPVTARNRFYQVPHCNGMGYRKPSAQAAMRGIKAEGGWGVVNTEQCSIHPSSDDTPRISARLWDDGDIR 83 (370)
T ss_pred cccccCCCccCCCEEeccceEECCcccCcCCCChHHHHHHHHHHhCCCceEEEEeeeEEccccccCcccCcCcCCHHHHH
Confidence 356799999999999999999999964 233344 355 468899999999998876432 2223333
Q ss_pred hhhh----cCCCCCcEEEEecCC--------------------------C---------------HHHHHHHHHHHHHCC
Q 020423 116 RFLA----FSPEQHPIVLQIGGS--------------------------N---------------LDNLAKATELANAYN 150 (326)
Q Consensus 116 ~~~~----~~~~~~piivQL~g~--------------------------~---------------~~~f~~aA~~a~~aG 150 (326)
.|.+ +|+.+.++++||++. . .++|++||++++++|
T Consensus 84 ~~~~l~~~vh~~G~~i~~QL~H~G~~~~~~~~~~~~~~ps~~~~~~~~~~~~~p~~mt~~eI~~ii~~f~~AA~ra~~aG 163 (370)
T cd02929 84 NLAAMTDAVHKHGALAGIELWHGGAHAPNRESRETPLGPSQLPSEFPTGGPVQAREMDKDDIKRVRRWYVDAALRARDAG 163 (370)
T ss_pred HHHHHHHHHHHCCCeEEEecccCCCCCCccCCCCCccCCCCCCCCccccCCCCCccCCHHHHHHHHHHHHHHHHHHHHcC
Confidence 3332 688999999999531 0 268999999999999
Q ss_pred CCEEEecCCC---------CCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCC------ccHHHHH
Q 020423 151 YDEINLNCGC---------PSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDH------DSYNQLC 215 (326)
Q Consensus 151 ~d~Iein~g~---------P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~------~~~~e~~ 215 (326)
||+||||++| |. .|+|+|+|||+++||.+|+.|++++||++++.++.|++|++.++. .+.++..
T Consensus 164 fDgVEih~ahGyLl~QFlSp~-~N~RtD~yGGslenR~Rf~~eii~aIr~~vg~~~~v~vRls~~~~~~~~g~~~~~e~~ 242 (370)
T cd02929 164 FDIVYVYAAHGYLPLQFLLPR-YNKRTDEYGGSLENRARFWRETLEDTKDAVGDDCAVATRFSVDELIGPGGIESEGEGV 242 (370)
T ss_pred CCEEEEcccccchHHHhhCcc-ccCCccccCCChHhhhHHHHHHHHHHHHHcCCCceEEEEecHHHhcCCCCCCCHHHHH
Confidence 9999999997 66 469999999999999999999999999999766666666654331 2456665
Q ss_pred HHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCC-ccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhC-CChh
Q 020423 216 DFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPP-LKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKG-AHHV 293 (326)
Q Consensus 216 ~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~-~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~G-aD~V 293 (326)
+ +++.+++. +|+++++.+.....+... ...+. ..++...++++. +++|||++|+|+++++++++++.| ||+|
T Consensus 243 ~-~~~~l~~~-~D~i~vs~g~~~~~~~~~---~~~~~~~~~~~~~~ik~~-~~~pvi~~G~i~~~~~~~~~l~~g~~D~V 316 (370)
T cd02929 243 E-FVEMLDEL-PDLWDVNVGDWANDGEDS---RFYPEGHQEPYIKFVKQV-TSKPVVGVGRFTSPDKMVEVVKSGILDLI 316 (370)
T ss_pred H-HHHHHHhh-CCEEEecCCCcccccccc---ccCCccccHHHHHHHHHH-CCCCEEEeCCCCCHHHHHHHHHcCCCCee
Confidence 5 44556654 899999876421111100 11111 124455555554 599999999999999999999966 9999
Q ss_pred hhhHHHHhCCchhHHhHHHhhhCCCCCC
Q 020423 294 MVGRAAYQNPWYTLGHVDTAIYGAPSSG 321 (326)
Q Consensus 294 ~iGRall~dP~l~~~~i~~~~~~~~~~~ 321 (326)
++||++|+||+ |.+++++......++|
T Consensus 317 ~~gR~~ladP~-l~~k~~~g~~~~i~~C 343 (370)
T cd02929 317 GAARPSIADPF-LPKKIREGRIDDIREC 343 (370)
T ss_pred eechHhhhCch-HHHHHHcCCccccccC
Confidence 99999999999 5777776444344444
|
TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine. |
| >cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-41 Score=320.92 Aligned_cols=252 Identities=15% Similarity=0.137 Sum_probs=190.7
Q ss_pred CCccccccC-eecCCcEEEccCCC--------CChHHHHHH-HHHcCCCcEEEecceeecccc------------ccccc
Q 020423 56 HTKAEMVAR-QYLPPWFSVAPMMD--------WTDNHYRTL-ARLISKHAWLYTEMLAAETII------------YQQGN 113 (326)
Q Consensus 56 l~~p~~ig~-~~l~nrivlAPM~~--------~s~~~~r~~-~~~~Gg~gli~te~~~~~~~~------------~~~~~ 113 (326)
||+|++||+ ++|||||+|+||.. .|+..+++| .|+.||+|||+||.+.+++.. ++++.
T Consensus 1 Lf~P~~i~~~~~lkNRi~~~p~~~~~~~~~g~~~~~~~~~y~~rA~gG~glii~~~~~v~~~~~~~~~~~~~~~~~~d~~ 80 (338)
T cd04733 1 LGQPLTLPNGATLPNRLAKAAMSERLADGRGLPTPELIRLYRRWAEGGIGLIITGNVMVDPRHLEEPGIIGNVVLESGED 80 (338)
T ss_pred CCCCeEcCCCcEEcccceecccccccccCCCCCCHHHHHHHHHHhCCCceEEEEeeEEECcccccCCCcCCCcccCCHHH
Confidence 799999995 99999999999953 377888888 556799999999998876432 12223
Q ss_pred hhhhhh----cCCCCCcEEEEecCC-----------------------------------------CHHHHHHHHHHHHH
Q 020423 114 LDRFLA----FSPEQHPIVLQIGGS-----------------------------------------NLDNLAKATELANA 148 (326)
Q Consensus 114 ~~~~~~----~~~~~~piivQL~g~-----------------------------------------~~~~f~~aA~~a~~ 148 (326)
++.+.+ +|+.+.++++||++. ..++|++||+++++
T Consensus 81 i~~~~~l~~~vh~~G~~~~~Ql~h~G~~~~~~~~~~~~~ps~~~~~~~~~~~~~~p~~mt~~eI~~~i~~~~~aA~ra~~ 160 (338)
T cd04733 81 LEAFREWAAAAKANGALIWAQLNHPGRQSPAGLNQNPVAPSVALDPGGLGKLFGKPRAMTEEEIEDVIDRFAHAARLAQE 160 (338)
T ss_pred HHHHHHHHHHHHhcCCEEEEEccCCCcCCCccCCCCCcCCCCCcCcccccccCCCCCcCCHHHHHHHHHHHHHHHHHHHH
Confidence 333332 688999999999751 02689999999999
Q ss_pred CCCCEEEecCCC---------CCCcccCCCCccccccCCHHHHHHHHHHHHhcCC--CcEEEEeccC--CCCCccHHHHH
Q 020423 149 YNYDEINLNCGC---------PSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTN--VPVSVKCRIG--VDDHDSYNQLC 215 (326)
Q Consensus 149 aG~d~Iein~g~---------P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~--~pv~vK~r~g--~~~~~~~~e~~ 215 (326)
+|||+||||++| |.. |+|+|+|||+++||++|+.|++++||++++ ++|.+|++.. .....+.++..
T Consensus 161 aGfDgVeih~a~gyLl~qFlsp~~-N~R~D~yGGslenR~rf~~EiI~aIR~avG~d~~v~vris~~~~~~~g~~~eea~ 239 (338)
T cd04733 161 AGFDGVQIHAAHGYLLSQFLSPLT-NKRTDEYGGSLENRARLLLEIYDAIRAAVGPGFPVGIKLNSADFQRGGFTEEDAL 239 (338)
T ss_pred cCCCEEEEchhhhhHHHHhcCCcC-CCCCccCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEEcHHHcCCCCCCHHHHH
Confidence 999999999985 774 699999999999999999999999999984 7899998741 01112455555
Q ss_pred HHHHHHhhhCCccEEEEecCCcccCCCC--cCCcCCCCC-ccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhC-CC
Q 020423 216 DFIYKVSSLSPTRHFIIHSRKALLNGIS--PAENRTIPP-LKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKG-AH 291 (326)
Q Consensus 216 ~~ia~~le~~Gvd~I~v~~~~~~~~g~~--~~~~~~~~~-~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~G-aD 291 (326)
+ +++.+++.|+|+|+||+++....... .......++ ..++..+++++. +++||+++|+|.++++++++++.| ||
T Consensus 240 ~-ia~~Le~~Gvd~iev~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~-v~iPVi~~G~i~t~~~a~~~l~~g~aD 317 (338)
T cd04733 240 E-VVEALEEAGVDLVELSGGTYESPAMAGAKKESTIAREAYFLEFAEKIRKV-TKTPLMVTGGFRTRAAMEQALASGAVD 317 (338)
T ss_pred H-HHHHHHHcCCCEEEecCCCCCCccccccccCCccccchhhHHHHHHHHHH-cCCCEEEeCCCCCHHHHHHHHHcCCCC
Confidence 5 56677889999999998863211100 000000111 124455566555 599999999999999999999966 99
Q ss_pred hhhhhHHHHhCCchhHHhHH
Q 020423 292 HVMVGRAAYQNPWYTLGHVD 311 (326)
Q Consensus 292 ~V~iGRall~dP~l~~~~i~ 311 (326)
+|++||++++||+ |.+++.
T Consensus 318 ~V~lgR~~iadP~-~~~k~~ 336 (338)
T cd04733 318 GIGLARPLALEPD-LPNKLL 336 (338)
T ss_pred eeeeChHhhhCcc-HHHHHh
Confidence 9999999999999 566654
|
Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-41 Score=303.80 Aligned_cols=227 Identities=30% Similarity=0.542 Sum_probs=194.8
Q ss_pred cEEEccCCCCChHHHHHHHHHcCCCcEEEecceeeccccccccchhhhhhcCCCCCcEEEEecCCCHHHHHHHHHHHHHC
Q 020423 70 WFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSNLDNLAKATELANAY 149 (326)
Q Consensus 70 rivlAPM~~~s~~~~r~~~~~~Gg~gli~te~~~~~~~~~~~~~~~~~~~~~~~~~piivQL~g~~~~~f~~aA~~a~~a 149 (326)
++++|||+++|+.+||.+++.+| +++++|||+.++.+.........+...++.+.|+++||.+.++++|+++|++++++
T Consensus 1 ~~~~aPm~~~~~~~fR~l~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~qi~g~~~~~~~~aa~~~~~a 79 (231)
T cd02801 1 KLILAPMVGVTDLPFRLLCRRYG-ADLVYTEMISAKALLRGNRKRLRLLTRNPEERPLIVQLGGSDPETLAEAAKIVEEL 79 (231)
T ss_pred CeEeCCCCCCcCHHHHHHHHHHC-CCEEEecCEEEhhhhhcCHHHHHhhccCccCCCEEEEEcCCCHHHHHHHHHHHHhc
Confidence 47899999999999999999998 99999999999988876665555556678889999999999999999999999999
Q ss_pred CCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccE
Q 020423 150 NYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRH 229 (326)
Q Consensus 150 G~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~ 229 (326)
|||+||||+|||.. +.++|+||++++++++++.|+++++++.++.|+++|+|.++++. ++..+ +++.+++.|+|+
T Consensus 80 G~d~ieln~g~p~~-~~~~~~~G~~l~~~~~~~~eii~~v~~~~~~~v~vk~r~~~~~~---~~~~~-~~~~l~~~Gvd~ 154 (231)
T cd02801 80 GADGIDLNMGCPSP-KVTKGGAGAALLKDPELVAEIVRAVREAVPIPVTVKIRLGWDDE---EETLE-LAKALEDAGASA 154 (231)
T ss_pred CCCEEEEeCCCCHH-HHhCCCeeehhcCCHHHHHHHHHHHHHhcCCCEEEEEeeccCCc---hHHHH-HHHHHHHhCCCE
Confidence 99999999999996 57889999999999999999999999999999999999988653 23333 345667899999
Q ss_pred EEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHh-CCChhhhhHHHHhCCchhHH
Q 020423 230 FIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRK-GAHHVMVGRAAYQNPWYTLG 308 (326)
Q Consensus 230 I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~-GaD~V~iGRall~dP~l~~~ 308 (326)
|++|+++... + ...+.+++.++++++. +++||+++|||.+++++.++++. |||+||+||+++.||++ .+
T Consensus 155 i~v~~~~~~~-~-------~~~~~~~~~~~~i~~~-~~ipvi~~Ggi~~~~d~~~~l~~~gad~V~igr~~l~~P~~-~~ 224 (231)
T cd02801 155 LTVHGRTREQ-R-------YSGPADWDYIAEIKEA-VSIPVIANGDIFSLEDALRCLEQTGVDGVMIGRGALGNPWL-FR 224 (231)
T ss_pred EEECCCCHHH-c-------CCCCCCHHHHHHHHhC-CCCeEEEeCCCCCHHHHHHHHHhcCCCEEEEcHHhHhCCHH-HH
Confidence 9999986421 1 1123468888887765 59999999999999999999995 89999999999999995 55
Q ss_pred hHHH
Q 020423 309 HVDT 312 (326)
Q Consensus 309 ~i~~ 312 (326)
++.+
T Consensus 225 ~~~~ 228 (231)
T cd02801 225 EIKE 228 (231)
T ss_pred hhhh
Confidence 5554
|
Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present. |
| >cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5 | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-41 Score=317.54 Aligned_cols=253 Identities=17% Similarity=0.157 Sum_probs=193.1
Q ss_pred CCccccccCeecCCcEEEccCCC-------CChHHHHHH-HHHcCCCcEEEecceeeccc----------cccccchhhh
Q 020423 56 HTKAEMVARQYLPPWFSVAPMMD-------WTDNHYRTL-ARLISKHAWLYTEMLAAETI----------IYQQGNLDRF 117 (326)
Q Consensus 56 l~~p~~ig~~~l~nrivlAPM~~-------~s~~~~r~~-~~~~Gg~gli~te~~~~~~~----------~~~~~~~~~~ 117 (326)
||+|++||++++||||+++||.. .|+..+++| .++.||+|||+||.+.++.. .+.++.++.+
T Consensus 1 Lf~Pl~ig~~~lkNRiv~spm~~~~~~~G~~t~~~~~yy~~rA~GG~GlIite~~~V~~~~~~~~~~~~~~~~d~~i~~~ 80 (361)
T cd04747 1 LFTPFTLKGLTLPNRIVMAPMTRSFSPGGVPGQDVAAYYRRRAAGGVGLIITEGTAVDHPAASGDPNVPRFHGEDALAGW 80 (361)
T ss_pred CCCCeeECCEEeeCCeEEcCcccCcCCCCCCCHHHHHHHHHHhcCCccEEEecceEeccccccCCCCCCccCCHHHHHHH
Confidence 69999999999999999999963 478889988 55679999999999888522 1122233333
Q ss_pred hh----cCCCCCcEEEEecCCC----------------------------------------HHHHHHHHHHHHHCCCCE
Q 020423 118 LA----FSPEQHPIVLQIGGSN----------------------------------------LDNLAKATELANAYNYDE 153 (326)
Q Consensus 118 ~~----~~~~~~piivQL~g~~----------------------------------------~~~f~~aA~~a~~aG~d~ 153 (326)
.+ +|+.+.++++||++.. .++|++||++++++|||+
T Consensus 81 ~~l~d~vh~~Ga~i~~QL~H~Gr~~~~~~~~~~~~~~~~ps~~~~~~~~~p~~mt~~eI~~ii~~f~~AA~~a~~aGfDg 160 (361)
T cd04747 81 KKVVDEVHAAGGKIAPQLWHVGAMRKLGTPPFPDVPPLSPSGLVGPGKPVGREMTEADIDDVIAAFARAAADARRLGFDG 160 (361)
T ss_pred HHHHHHHHhcCCEEEEeccCCCCCcCcccCccCCCceeCCCCCCcCCCCCCccCCHHHHHHHHHHHHHHHHHHHHcCCCE
Confidence 32 7899999999996410 258999999999999999
Q ss_pred EEecCCC---------CCCcccCCCCccccccCCHHHHHHHHHHHHhcC--CCcEEEEeccCC-CC-----CccHHHHHH
Q 020423 154 INLNCGC---------PSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGV-DD-----HDSYNQLCD 216 (326)
Q Consensus 154 Iein~g~---------P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~--~~pv~vK~r~g~-~~-----~~~~~e~~~ 216 (326)
||||++| |.. |.|+|+|||+++||.||+.||+++||+++ ++||.+|++... .+ ..+.++..+
T Consensus 161 Veih~ahGyLl~qFLSp~~-N~RtDeYGGslenR~Rf~~eii~air~~vG~d~~v~vRis~~~~~~~~~~~g~~~~e~~~ 239 (361)
T cd04747 161 IELHGAHGYLIDQFFWAGT-NRRADGYGGSLAARSRFAAEVVKAIRAAVGPDFPIILRFSQWKQQDYTARLADTPDELEA 239 (361)
T ss_pred EEEecccchHHHHhcCCCC-CCCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEECcccccccccCCCCCHHHHHH
Confidence 9999997 774 69999999999999999999999999998 478999998510 11 235566665
Q ss_pred HHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCC------------------CC
Q 020423 217 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI------------------NT 278 (326)
Q Consensus 217 ~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI------------------~s 278 (326)
+++.+++.|+|+|+++.+..+.. ......+.....+++ .+++||+++|+| .|
T Consensus 240 -~~~~l~~~gvd~i~vs~g~~~~~--------~~~~~~~~~~~~~k~-~~~~pv~~~G~i~~~~~~~~~~~~~~~~~~~~ 309 (361)
T cd04747 240 -LLAPLVDAGVDIFHCSTRRFWEP--------EFEGSELNLAGWTKK-LTGLPTITVGSVGLDGDFIGAFAGDEGASPAS 309 (361)
T ss_pred -HHHHHHHcCCCEEEecCCCccCC--------CcCccchhHHHHHHH-HcCCCEEEECCcccccccccccccccccccCC
Confidence 45567889999999987531110 001112444444444 458999999999 59
Q ss_pred HHHHHHHHHhC-CChhhhhHHHHhCCchhHHhHHHhhhCCCCC
Q 020423 279 VDEVNAALRKG-AHHVMVGRAAYQNPWYTLGHVDTAIYGAPSS 320 (326)
Q Consensus 279 ~~da~~~l~~G-aD~V~iGRall~dP~l~~~~i~~~~~~~~~~ 320 (326)
+++++++++.| ||+|++||++++||| |.+++.+......++
T Consensus 310 ~~~a~~~l~~g~~D~V~~gR~~iadP~-~~~k~~~g~~~~Ir~ 351 (361)
T cd04747 310 LDRLLERLERGEFDLVAVGRALLSDPA-WVAKVREGRLDELIP 351 (361)
T ss_pred HHHHHHHHHCCCCCeehhhHHHHhCcH-HHHHHHcCCcccccC
Confidence 99999999965 999999999999999 577777644433433
|
Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside [] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-42 Score=325.93 Aligned_cols=254 Identities=16% Similarity=0.168 Sum_probs=179.3
Q ss_pred cCCccccccCeecCCcEEEccCCC--------CCh-HHHHHH-HHHcCCCcEEEecceeecccc---------ccccchh
Q 020423 55 LHTKAEMVARQYLPPWFSVAPMMD--------WTD-NHYRTL-ARLISKHAWLYTEMLAAETII---------YQQGNLD 115 (326)
Q Consensus 55 ~l~~p~~ig~~~l~nrivlAPM~~--------~s~-~~~r~~-~~~~Gg~gli~te~~~~~~~~---------~~~~~~~ 115 (326)
+||+|++||+++|||||+||||+. +++ .+++|| .|+.||+|||+||.+.+++.. ++++++.
T Consensus 1 ~LF~P~~ig~~~lkNRiv~apm~~~~~~~~g~~~~~~~~~yy~~rA~GG~Glii~~~~~v~~~~~~~~~~~~i~~d~~i~ 80 (341)
T PF00724_consen 1 KLFSPLKIGNLTLKNRIVMAPMTTNMADPDGGVPTDRLIAYYERRAKGGAGLIITEATAVSPEGRGFPGQPGIWDDEQIP 80 (341)
T ss_dssp GGGS-EEETTEEESSSEEE----SSTSCTTTTBCHHHHHHHHHHHHHTTTSEEEEEEEESSGGGSSSTTSEBSSSHHHHH
T ss_pred CCCCCeeECCEEecCCeEECCCCCCCcccCCCCcHHHHHHHHHHHhhcCCceEEecccccccccccccccchhchhhHHH
Confidence 489999999999999999999964 344 667777 567899999999999888643 2333444
Q ss_pred hhhh----cCCCCCcEEEEecCCC-------------------------------------------HHHHHHHHHHHHH
Q 020423 116 RFLA----FSPEQHPIVLQIGGSN-------------------------------------------LDNLAKATELANA 148 (326)
Q Consensus 116 ~~~~----~~~~~~piivQL~g~~-------------------------------------------~~~f~~aA~~a~~ 148 (326)
.+.+ +|+.+.++++||+|.. .++|++||++|++
T Consensus 81 ~~k~l~~~vh~~Ga~i~~QL~H~G~~~~~~~~~~~~~~psa~~~~~~~~~~~~~~~~~mt~~eI~~ii~~f~~AA~~A~~ 160 (341)
T PF00724_consen 81 GLKKLADAVHAHGAKIIAQLWHAGRQANPEYSGDPPVGPSAPSALPSPIKFMGYPPREMTEEEIEEIIEDFAQAARRAKE 160 (341)
T ss_dssp HHHHHHHHHHHTTSEEEEEEE--GGGSSGCCSGGGCEESSCSSSSSTTTTETSCEEEE--HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCccceeeccccccccCcccCCCCccCcccccccCcccccCCCCCeeCCHHHHHHHHHHHHHHHHHHHH
Confidence 4432 7899999999997410 2689999999999
Q ss_pred CCCCEEEecCC---------CCCCcccCCCCccccccCCHHHHHHHHHHHHhcC--CCcEEEEeccCCCC--CccHHHHH
Q 020423 149 YNYDEINLNCG---------CPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDD--HDSYNQLC 215 (326)
Q Consensus 149 aG~d~Iein~g---------~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~--~~pv~vK~r~g~~~--~~~~~e~~ 215 (326)
||||+||||++ +|. +|+|+|+|||+++||.||+.||+++||+.+ ++||.+|++..... ..+.+|..
T Consensus 161 AGfDGVEIH~ahGyLl~qFLSp~-~N~RtDeYGGs~ENR~Rf~~Eii~aIr~~vg~d~~v~~Rls~~~~~~~g~~~~e~~ 239 (341)
T PF00724_consen 161 AGFDGVEIHAAHGYLLSQFLSPL-TNRRTDEYGGSLENRARFLLEIIEAIREAVGPDFPVGVRLSPDDFVEGGITLEETI 239 (341)
T ss_dssp TT-SEEEEEESTTSHHHHHHSTT-T---SSTTSSSHHHHHHHHHHHHHHHHHHHTGGGEEEEEEETTCSSTTSHHSHHHH
T ss_pred hccCeEeecccchhhhhheeeec-cCCCchhhhhhhchhhHHHHHHHHHHHHHhcCCceEEEEEeeecccCCCCchHHHH
Confidence 99999999987 577 469999999999999999999999999998 46678887774211 12345554
Q ss_pred HHHHHHhhhCCccEEEEecCCcccCCC-CcCCcCCCCCc-cHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhC-CCh
Q 020423 216 DFIYKVSSLSPTRHFIIHSRKALLNGI-SPAENRTIPPL-KYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKG-AHH 292 (326)
Q Consensus 216 ~~ia~~le~~Gvd~I~v~~~~~~~~g~-~~~~~~~~~~~-~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~G-aD~ 292 (326)
+ +++++++.|+|.++++......... .........+. .......+ ++.+++|||++|+|.+++.++++++.| ||+
T Consensus 240 ~-~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i-k~~~~~pvi~~G~i~~~~~ae~~l~~g~~Dl 317 (341)
T PF00724_consen 240 E-IAKLLEELGVDFLDVSHGSYVHWSEPRPSPPFDFEPGYNLDLAEAI-KKAVKIPVIGVGGIRTPEQAEKALEEGKADL 317 (341)
T ss_dssp H-HHHHHHHHHHTTEEEEEESEEEEEBTSSTTTTTTTTTTTHHHHHHH-HHHHSSEEEEESSTTHHHHHHHHHHTTSTSE
T ss_pred H-HHHHHHHHhhhhccccccccccccccccccccccccchhhhhhhhh-hhhcCceEEEEeeecchhhhHHHHhcCCceE
Confidence 4 4567788899999876433211000 00000011111 12333344 444599999999999999999999976 999
Q ss_pred hhhhHHHHhCCchhHHhHHH
Q 020423 293 VMVGRAAYQNPWYTLGHVDT 312 (326)
Q Consensus 293 V~iGRall~dP~l~~~~i~~ 312 (326)
|.+||++++||+ |++++.+
T Consensus 318 V~~gR~~ladPd-~~~k~~~ 336 (341)
T PF00724_consen 318 VAMGRPLLADPD-LPNKARE 336 (341)
T ss_dssp EEESHHHHH-TT-HHHHHHH
T ss_pred eeccHHHHhCch-HHHHHHc
Confidence 999999999999 6777766
|
It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A .... |
| >cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-40 Score=312.67 Aligned_cols=243 Identities=16% Similarity=0.140 Sum_probs=190.0
Q ss_pred cCCccccccCeecCCcEEEccCCC--------CChHHHHHHHHHcCCCcEEEecceeecccc---------ccccchhhh
Q 020423 55 LHTKAEMVARQYLPPWFSVAPMMD--------WTDNHYRTLARLISKHAWLYTEMLAAETII---------YQQGNLDRF 117 (326)
Q Consensus 55 ~l~~p~~ig~~~l~nrivlAPM~~--------~s~~~~r~~~~~~Gg~gli~te~~~~~~~~---------~~~~~~~~~ 117 (326)
.||+|++||+++|||||+++||.. .|+..+++|.+++.| |||+||.+.+++.. +.++.+..+
T Consensus 1 ~Lf~P~~ig~~~lkNRiv~apm~~~~~~~~G~~t~~~~~~y~~rA~g-glIi~~~~~v~~~g~~~~~~~~l~~d~~i~~l 79 (338)
T cd02933 1 KLFSPLKLGNLTLKNRIVMAPLTRSRADPDGVPTDLMAEYYAQRASA-GLIITEATQISPQGQGYPNTPGIYTDEQVEGW 79 (338)
T ss_pred CCCCCceeCCEeecCCcEECCCCccccCCCCCCCHHHHHHHHHHhcC-ceEEeCceeeCccccCCCCCCccCCHHHHHHH
Confidence 489999999999999999999953 377889988665556 99999999886532 222233333
Q ss_pred hh----cCCCCCcEEEEecCC----------------------------------C---------------HHHHHHHHH
Q 020423 118 LA----FSPEQHPIVLQIGGS----------------------------------N---------------LDNLAKATE 144 (326)
Q Consensus 118 ~~----~~~~~~piivQL~g~----------------------------------~---------------~~~f~~aA~ 144 (326)
.+ +|+.+.++++||.+. . .++|+++|+
T Consensus 80 r~la~~vh~~ga~~~~QL~H~G~~~~~~~~~~~~~~~~ps~~~~~~~~~~~~~~~~~~~p~~mt~~eI~~ii~~f~~aA~ 159 (338)
T cd02933 80 KKVTDAVHAKGGKIFLQLWHVGRVSHPSLLPGGAPPVAPSAIAAEGKVFTPAGKVPYPTPRALTTEEIPGIVADFRQAAR 159 (338)
T ss_pred HHHHHHHHhcCCeEEEEcccCccCCCcccccCCCCccCCCCCCCCcccccccccCCCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 32 788999999998540 0 267999999
Q ss_pred HHHHCCCCEEEecCCC---------CCCcccCCCCccccccCCHHHHHHHHHHHHhcCCC-cEEEEeccCCC-----CCc
Q 020423 145 LANAYNYDEINLNCGC---------PSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNV-PVSVKCRIGVD-----DHD 209 (326)
Q Consensus 145 ~a~~aG~d~Iein~g~---------P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~-pv~vK~r~g~~-----~~~ 209 (326)
+++++|||+||||++| |. .|+|+|+|||+++||.+|+.|++++||++++. +|.+|++.... ...
T Consensus 160 ~a~~aGfDgVeih~ahGyLl~qFlSp~-~N~R~D~yGGslenR~rf~~eii~air~~vg~d~v~vRis~~~~~~~~~~~~ 238 (338)
T cd02933 160 NAIEAGFDGVEIHGANGYLIDQFLRDG-SNKRTDEYGGSIENRARFLLEVVDAVAEAIGADRVGIRLSPFGTFNDMGDSD 238 (338)
T ss_pred HHHHcCCCEEEEccccchhHHHhcCCc-cCCCCCcCCCcHHHhhhHHHHHHHHHHHHhCCCceEEEECccccCCCCCCCC
Confidence 9999999999999997 76 46999999999999999999999999999855 89999886411 123
Q ss_pred cHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhC
Q 020423 210 SYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKG 289 (326)
Q Consensus 210 ~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~G 289 (326)
+.+|..+ +++.+++.|+|+|+|+.+... .. .....++...++++. +++|||++|+|. +++++++++.|
T Consensus 239 ~~ee~~~-~~~~l~~~g~d~i~vs~g~~~--~~-------~~~~~~~~~~~ik~~-~~ipvi~~G~i~-~~~a~~~l~~g 306 (338)
T cd02933 239 PEATFSY-LAKELNKRGLAYLHLVEPRVA--GN-------PEDQPPDFLDFLRKA-FKGPLIAAGGYD-AESAEAALADG 306 (338)
T ss_pred CHHHHHH-HHHHHHHcCCcEEEEecCCCC--Cc-------ccccchHHHHHHHHH-cCCCEEEECCCC-HHHHHHHHHcC
Confidence 4566666 567778899999999654321 00 022346666666655 599999999997 99999999965
Q ss_pred -CChhhhhHHHHhCCchhHHhHHH
Q 020423 290 -AHHVMVGRAAYQNPWYTLGHVDT 312 (326)
Q Consensus 290 -aD~V~iGRall~dP~l~~~~i~~ 312 (326)
||+|++||++++||+ |.+++.+
T Consensus 307 ~~D~V~~gR~~ladP~-~~~k~~~ 329 (338)
T cd02933 307 KADLVAFGRPFIANPD-LVERLKN 329 (338)
T ss_pred CCCEEEeCHhhhhCcC-HHHHHhc
Confidence 999999999999999 5666654
|
OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes. |
| >cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-40 Score=313.38 Aligned_cols=251 Identities=15% Similarity=0.135 Sum_probs=194.7
Q ss_pred CccccccCeecCCcEEEccCCC--------CChHHHHHHH-HHcCCCcEEEecceeecccc---------ccccchhhhh
Q 020423 57 TKAEMVARQYLPPWFSVAPMMD--------WTDNHYRTLA-RLISKHAWLYTEMLAAETII---------YQQGNLDRFL 118 (326)
Q Consensus 57 ~~p~~ig~~~l~nrivlAPM~~--------~s~~~~r~~~-~~~Gg~gli~te~~~~~~~~---------~~~~~~~~~~ 118 (326)
|+|++||+++||||++++||.+ .++.+++||. ++.||+|||+||.+.+++.. +++++++.|.
T Consensus 1 f~p~~i~~~~l~NR~~~~p~~~~~~~~~g~~~~~~~~~y~~ra~gg~glii~e~~~v~~~~~~~~~~~~~~~~~~~~~~~ 80 (327)
T cd02803 1 FSPIKIGGLTLKNRIVMAPMTENMATEDGTPTDELIEYYEERAKGGVGLIITEAAYVDPEGKGYPGQLGIYDDEQIPGLR 80 (327)
T ss_pred CCCcccCCEeeccccEecccccccccCCCCCCHHHHHHHHHHhCcCCcEEEECcEEEcCcccCCCCCcCcCCHHHHHHHH
Confidence 7999999999999999999964 4778888884 46699999999999887542 3334444443
Q ss_pred h----cCCCCCcEEEEecCCC--------------------------------------HHHHHHHHHHHHHCCCCEEEe
Q 020423 119 A----FSPEQHPIVLQIGGSN--------------------------------------LDNLAKATELANAYNYDEINL 156 (326)
Q Consensus 119 ~----~~~~~~piivQL~g~~--------------------------------------~~~f~~aA~~a~~aG~d~Iei 156 (326)
+ +|+.+.++++||+|.. .++|+++|++++++|||+|||
T Consensus 81 ~~~~~vh~~g~~~~~Ql~h~G~~~~~~~~~~~~~~~s~~~~~~~~~~~~~mt~~ei~~~i~~~~~aA~~a~~aGfDgvei 160 (327)
T cd02803 81 KLTEAVHAHGAKIFAQLAHAGRQAQPNLTGGPPPAPSAIPSPGGGEPPREMTKEEIEQIIEDFAAAARRAKEAGFDGVEI 160 (327)
T ss_pred HHHHHHHhCCCHhhHHhhCCCcCCCCcCCCCCccCCCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 3 6889999999997420 368999999999999999999
Q ss_pred cCC---------CCCCcccCCCCccccccCCHHHHHHHHHHHHhcC--CCcEEEEeccCCCC--CccHHHHHHHHHHHhh
Q 020423 157 NCG---------CPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDD--HDSYNQLCDFIYKVSS 223 (326)
Q Consensus 157 n~g---------~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~--~~pv~vK~r~g~~~--~~~~~e~~~~ia~~le 223 (326)
|++ ||.. |.|+|+|||+++||++++.|++++||+.+ ++|+.+|++..... ..+.++..+ +++.++
T Consensus 161 h~~~gyL~~qFlsp~~-n~R~d~yGgs~enr~r~~~eii~avr~~~g~d~~i~vris~~~~~~~g~~~~e~~~-la~~l~ 238 (327)
T cd02803 161 HGAHGYLLSQFLSPYT-NKRTDEYGGSLENRARFLLEIVAAVREAVGPDFPVGVRLSADDFVPGGLTLEEAIE-IAKALE 238 (327)
T ss_pred cchhhhHHHHhcCccc-cCCCcccCCCHHHHHHHHHHHHHHHHHHcCCCceEEEEechhccCCCCCCHHHHHH-HHHHHH
Confidence 988 6774 68999999999999999999999999998 67999999875221 124555555 456778
Q ss_pred hCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHh-CCChhhhhHHHHhC
Q 020423 224 LSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRK-GAHHVMVGRAAYQN 302 (326)
Q Consensus 224 ~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~-GaD~V~iGRall~d 302 (326)
+.|+|+|+++++...................++.++.+++.. ++||+++|||.++++++++++. |||+|++||++++|
T Consensus 239 ~~G~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~-~iPVi~~Ggi~t~~~a~~~l~~g~aD~V~igR~~lad 317 (327)
T cd02803 239 EAGVDALHVSGGSYESPPPIIPPPYVPEGYFLELAEKIKKAV-KIPVIAVGGIRDPEVAEEILAEGKADLVALGRALLAD 317 (327)
T ss_pred HcCCCEEEeCCCCCcccccccCCCCCCcchhHHHHHHHHHHC-CCCEEEeCCCCCHHHHHHHHHCCCCCeeeecHHHHhC
Confidence 899999999987642211100000011123456666666654 8999999999999999999996 79999999999999
Q ss_pred CchhHHhHH
Q 020423 303 PWYTLGHVD 311 (326)
Q Consensus 303 P~l~~~~i~ 311 (326)
|+ |.+++.
T Consensus 318 P~-l~~k~~ 325 (327)
T cd02803 318 PD-LPNKAR 325 (327)
T ss_pred cc-HHHHHh
Confidence 99 566554
|
OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-39 Score=307.55 Aligned_cols=248 Identities=17% Similarity=0.181 Sum_probs=191.6
Q ss_pred CCccccccCeecCCcEEEccCCC-------CChHHHHHH-HHHcCCCcEEEecceeecccc---------ccccchhhhh
Q 020423 56 HTKAEMVARQYLPPWFSVAPMMD-------WTDNHYRTL-ARLISKHAWLYTEMLAAETII---------YQQGNLDRFL 118 (326)
Q Consensus 56 l~~p~~ig~~~l~nrivlAPM~~-------~s~~~~r~~-~~~~Gg~gli~te~~~~~~~~---------~~~~~~~~~~ 118 (326)
||+|++||+++|||||+++||.. .|+..+++| .++.||+|||+||.+.+++.. +.++.++.+.
T Consensus 1 Lf~P~~ig~~~l~NRi~~~pm~~~~~~~g~~~~~~~~~y~~rA~gg~glii~~~~~v~~~~~~~~~~~~~~~d~~~~~~~ 80 (336)
T cd02932 1 LFTPLTLRGVTLKNRIVVSPMCQYSAEDGVATDWHLVHYGSRALGGAGLVIVEATAVSPEGRITPGDLGLWNDEQIEALK 80 (336)
T ss_pred CCCCeeECCEEEeccCEEcccccCcCCCCCCCHHHHHHHHHHHcCCCcEEEEcceEECCCcCCCCCceeecCHHHHHHHH
Confidence 79999999999999999999963 377888888 456799999999998886432 2333344443
Q ss_pred h----cCCCCCcEEEEecCC---------------------------------------------------CHHHHHHHH
Q 020423 119 A----FSPEQHPIVLQIGGS---------------------------------------------------NLDNLAKAT 143 (326)
Q Consensus 119 ~----~~~~~~piivQL~g~---------------------------------------------------~~~~f~~aA 143 (326)
+ +|+.+.++++||+|. -.++|+++|
T Consensus 81 ~l~~~vh~~G~~~~~QL~H~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ps~~~~~~~~~~p~~mt~~eI~~ii~~~~~aA 160 (336)
T cd02932 81 RIVDFIHSQGAKIGIQLAHAGRKASTAPPWEGGGPLLPPGGGGWQVVAPSAIPFDEGWPTPRELTREEIAEVVDAFVAAA 160 (336)
T ss_pred HHHHHHHhcCCcEEEEccCCCcCCCCCCCccccccccccccCCCceeCCCCCcCCCCCCCCCcCCHHHHHHHHHHHHHHH
Confidence 2 688999999998531 026899999
Q ss_pred HHHHHCCCCEEEecCCC---------CCCcccCCCCccccccCCHHHHHHHHHHHHhcC--CCcEEEEeccCC--CCCcc
Q 020423 144 ELANAYNYDEINLNCGC---------PSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGV--DDHDS 210 (326)
Q Consensus 144 ~~a~~aG~d~Iein~g~---------P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~--~~pv~vK~r~g~--~~~~~ 210 (326)
++++++|||+||||++| |.. |.|+|+|||+++||++|+.|++++||+.+ ++||.+|++... +...+
T Consensus 161 ~~a~~aGfDgVei~~~~gyLl~qFlsp~~-N~R~D~yGgsl~nr~rf~~eiv~aIR~~vG~d~~v~vri~~~~~~~~g~~ 239 (336)
T cd02932 161 RRAVEAGFDVIEIHAAHGYLLHQFLSPLS-NKRTDEYGGSLENRMRFLLEVVDAVRAVWPEDKPLFVRISATDWVEGGWD 239 (336)
T ss_pred HHHHHcCCCEEEEccccccHHHHhcCCcc-CCCCcccCCCHHHHhHHHHHHHHHHHHHcCCCceEEEEEcccccCCCCCC
Confidence 99999999999999886 654 68999999999999999999999999999 688999988631 11224
Q ss_pred HHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCC-CCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhC
Q 020423 211 YNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI-PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKG 289 (326)
Q Consensus 211 ~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~-~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~G 289 (326)
.++..+ +++.+++.|+|+|+||.+..... ..... +...++...++++. +++||+++|+|.++++++++++.|
T Consensus 240 ~~e~~~-ia~~Le~~gvd~iev~~g~~~~~-----~~~~~~~~~~~~~~~~ir~~-~~iPVi~~G~i~t~~~a~~~l~~g 312 (336)
T cd02932 240 LEDSVE-LAKALKELGVDLIDVSSGGNSPA-----QKIPVGPGYQVPFAERIRQE-AGIPVIAVGLITDPEQAEAILESG 312 (336)
T ss_pred HHHHHH-HHHHHHHcCCCEEEECCCCCCcc-----cccCCCccccHHHHHHHHhh-CCCCEEEeCCCCCHHHHHHHHHcC
Confidence 556655 55667889999999986532100 00011 11224555666655 499999999999999999999977
Q ss_pred -CChhhhhHHHHhCCchhHHhHHH
Q 020423 290 -AHHVMVGRAAYQNPWYTLGHVDT 312 (326)
Q Consensus 290 -aD~V~iGRall~dP~l~~~~i~~ 312 (326)
||+|++||++++||+ |.+++.+
T Consensus 313 ~aD~V~~gR~~i~dP~-~~~k~~~ 335 (336)
T cd02932 313 RADLVALGRELLRNPY-WPLHAAA 335 (336)
T ss_pred CCCeehhhHHHHhCcc-HHHHHhh
Confidence 999999999999999 4666543
|
YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs. |
| >PLN02411 12-oxophytodienoate reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-39 Score=311.07 Aligned_cols=255 Identities=16% Similarity=0.115 Sum_probs=182.4
Q ss_pred ccccCCccccccCeecCCcEEEccCCC-------CChHHHHHH-HHHcCCCcEEEecceeecccc---------ccccch
Q 020423 52 NIILHTKAEMVARQYLPPWFSVAPMMD-------WTDNHYRTL-ARLISKHAWLYTEMLAAETII---------YQQGNL 114 (326)
Q Consensus 52 ~~~~l~~p~~ig~~~l~nrivlAPM~~-------~s~~~~r~~-~~~~Gg~gli~te~~~~~~~~---------~~~~~~ 114 (326)
.+..||+|++||+++|||||+||||++ .|+..++|| .|+.|| |||+||.+.+++.. ++++++
T Consensus 8 ~~~~Lf~P~~ig~~~lkNRiv~aPm~~~~~~dG~~t~~~~~yy~~rA~gG-GLIIte~~~V~~~g~~~~~~~gi~~d~~i 86 (391)
T PLN02411 8 SNETLFSPYKMGRFDLSHRVVLAPMTRCRALNGIPNAALAEYYAQRSTPG-GFLISEGTLISPTAPGFPHVPGIYSDEQV 86 (391)
T ss_pred CchhcCCCeeECCEEEcccCEECCcCcCcCCCCCCCHHHHHHHHHHHcCC-CEEEeCceEECcccCcCCCCCccCCHHHH
Confidence 345799999999999999999999964 477888888 456677 99999999887432 233333
Q ss_pred hhhhh----cCCCCCcEEEEecCC----------------------------------------C------------HHH
Q 020423 115 DRFLA----FSPEQHPIVLQIGGS----------------------------------------N------------LDN 138 (326)
Q Consensus 115 ~~~~~----~~~~~~piivQL~g~----------------------------------------~------------~~~ 138 (326)
..|.+ +|+.+.++++||+|. . .++
T Consensus 87 ~~~~~l~~avH~~G~~i~~QL~H~Gr~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~pr~mt~~eI~~ii~~ 166 (391)
T PLN02411 87 EAWKKVVDAVHAKGSIIFCQLWHVGRASHQVYQPGGAAPISSTNKPISERWRILMPDGSYGKYPKPRALETSEIPEVVEH 166 (391)
T ss_pred HHHHHHHHHHHhcCCEEEEeccCCCCCCccccccCCCCccCCccccccCCcccccCCccccCCCCCccCCHHHHHHHHHH
Confidence 44432 788999999998530 0 267
Q ss_pred HHHHHHHHHHCCCCEEEecCC---------CCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCC-cEEEEeccCC---
Q 020423 139 LAKATELANAYNYDEINLNCG---------CPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNV-PVSVKCRIGV--- 205 (326)
Q Consensus 139 f~~aA~~a~~aG~d~Iein~g---------~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~-pv~vK~r~g~--- 205 (326)
|++||++|+++|||+||||++ +|. .|+|+|+|||+++||.||+.||+++||++++. .|.+|++...
T Consensus 167 f~~AA~rA~~AGFDGVEIH~AhGYLl~QFLSp~-tN~RtDeYGGSlENR~RF~lEIi~aVr~~vg~d~vgvRiS~~~~~~ 245 (391)
T PLN02411 167 YRQAALNAIRAGFDGIEIHGAHGYLIDQFLKDG-INDRTDEYGGSIENRCRFLMQVVQAVVSAIGADRVGVRVSPAIDHL 245 (391)
T ss_pred HHHHHHHHHHcCCCEEEEccccchHHHHhCCCc-cCCCCCcCCCCHHHHhHHHHHHHHHHHHHcCCCeEEEEEccccccc
Confidence 999999999999999999976 677 46999999999999999999999999999853 4777777521
Q ss_pred --CCCccHHHHHHHHHHHhhh----C--CccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCC
Q 020423 206 --DDHDSYNQLCDFIYKVSSL----S--PTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGIN 277 (326)
Q Consensus 206 --~~~~~~~e~~~~ia~~le~----~--Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~ 277 (326)
.+....++..+ +.+.+++ . |+|+|+|+.+.....+..... ...+...+..+.+.+|+.+++|||++|+|
T Consensus 246 ~~~~~~~~~~~~~-~~~~l~~~~~~~g~~vd~i~vs~g~~~~~~~~~~~-~~~~~~~~~~~a~~ik~~v~~pvi~~G~i- 322 (391)
T PLN02411 246 DATDSDPLNLGLA-VVERLNKLQLQNGSKLAYLHVTQPRYTAYGQTESG-RHGSEEEEAQLMRTLRRAYQGTFMCSGGF- 322 (391)
T ss_pred CCCCCcchhhHHH-HHHHHHHHHhhcCCCeEEEEecCCcccccCCCccc-ccCCccchhHHHHHHHHHcCCCEEEECCC-
Confidence 11122222222 2223332 2 599999997642110100000 00011112223333444458999999999
Q ss_pred CHHHHHHHHHhC-CChhhhhHHHHhCCchhHHhHHH
Q 020423 278 TVDEVNAALRKG-AHHVMVGRAAYQNPWYTLGHVDT 312 (326)
Q Consensus 278 s~~da~~~l~~G-aD~V~iGRall~dP~l~~~~i~~ 312 (326)
+++.++++++.| ||+|.+||++++||+ |++++++
T Consensus 323 ~~~~a~~~l~~g~aDlV~~gR~~iadPd-l~~k~~~ 357 (391)
T PLN02411 323 TRELGMQAVQQGDADLVSYGRLFISNPD-LVLRFKL 357 (391)
T ss_pred CHHHHHHHHHcCCCCEEEECHHHHhCcc-HHHHHhc
Confidence 679999999988 999999999999999 6777665
|
|
| >PRK10605 N-ethylmaleimide reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-39 Score=307.02 Aligned_cols=242 Identities=14% Similarity=0.109 Sum_probs=184.8
Q ss_pred cCCccccccCeecCCcEEEccCCC---------CChHHHHHHHHHcCCCcEEEecceeecccc---------ccccchhh
Q 020423 55 LHTKAEMVARQYLPPWFSVAPMMD---------WTDNHYRTLARLISKHAWLYTEMLAAETII---------YQQGNLDR 116 (326)
Q Consensus 55 ~l~~p~~ig~~~l~nrivlAPM~~---------~s~~~~r~~~~~~Gg~gli~te~~~~~~~~---------~~~~~~~~ 116 (326)
.||+|++||+++|||||++|||.+ .|+..+++|.+++ |+|||+||.+.+++.. ++++.++.
T Consensus 2 ~Lf~P~~ig~~~lkNRiv~apm~~~~~~~~~g~~t~~~~~~y~~rA-g~GLIi~e~~~v~~~~~~~~~~~~l~~d~~i~~ 80 (362)
T PRK10605 2 KLFSPLKVGAITAPNRVFMAPLTRLRSIEPGDIPTPLMAEYYRQRA-SAGLIISEATQISAQAKGYAGAPGLHSPEQIAA 80 (362)
T ss_pred CCCCCeeECCEEeccccEECCcCcCccCCCCCCCCHHHHHHHHHHh-CCCEEEECceeeCcccccCCCCCcccCHHHHHH
Confidence 589999999999999999999964 2667888887766 5999999999887432 22223333
Q ss_pred hhh----cCCCCCcEEEEecCC------------------------------------------C------------HHH
Q 020423 117 FLA----FSPEQHPIVLQIGGS------------------------------------------N------------LDN 138 (326)
Q Consensus 117 ~~~----~~~~~~piivQL~g~------------------------------------------~------------~~~ 138 (326)
|.+ +|+.+.++++||+|. . .++
T Consensus 81 ~~~lad~vH~~Ga~i~~QL~H~Gr~~~~~~~~~~~~~~apS~~~~~~~~~~~~~~~~~~~~~~~~p~~mt~~eI~~ii~~ 160 (362)
T PRK10605 81 WKKITAGVHAEGGHIAVQLWHTGRISHASLQPGGQAPVAPSAINAGTRTSLRDENGQAIRVETSTPRALELEEIPGIVND 160 (362)
T ss_pred HHHHHHHHHhCCCEEEEeccCCCCCCCcccCCCCCCeECCCCcCcCcccccccccccccccCCCCCccCCHHHHHHHHHH
Confidence 332 788999999999641 0 257
Q ss_pred HHHHHHHHHHCCCCEEEecCC---------CCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCC-cEEEEeccC----
Q 020423 139 LAKATELANAYNYDEINLNCG---------CPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNV-PVSVKCRIG---- 204 (326)
Q Consensus 139 f~~aA~~a~~aG~d~Iein~g---------~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~-pv~vK~r~g---- 204 (326)
|++||++|+++|||+||||++ +|. .|+|+|+|||+++||.||+.||+++||++++. .|.+|++..
T Consensus 161 f~~AA~rA~~AGfDGVEIh~ahGyLl~qFLSp~-~N~RtDeYGGslENR~Rf~~Eiv~aVr~~vg~~~igvRis~~~~~~ 239 (362)
T PRK10605 161 FRQAIANAREAGFDLVELHSAHGYLLHQFLSPS-SNQRTDQYGGSVENRARLVLEVVDAGIAEWGADRIGIRISPLGTFN 239 (362)
T ss_pred HHHHHHHHHHcCCCEEEEcccccchHHHhcCCc-CCCCCCcCCCcHHHHHHHHHHHHHHHHHHcCCCeEEEEECCccccc
Confidence 999999999999999999976 677 46999999999999999999999999999853 477777652
Q ss_pred -CCCCccHHH-HHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHH
Q 020423 205 -VDDHDSYNQ-LCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEV 282 (326)
Q Consensus 205 -~~~~~~~~e-~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da 282 (326)
.+...+.+| .++ +++.+++.|+|+|+|+.+.. ..+ .+....+..++++. +++||+++|++ +++.+
T Consensus 240 ~~~~G~~~~e~~~~-~~~~L~~~giD~i~vs~~~~-~~~---------~~~~~~~~~~ik~~-~~~pv~~~G~~-~~~~a 306 (362)
T PRK10605 240 NVDNGPNEEADALY-LIEQLGKRGIAYLHMSEPDW-AGG---------EPYSDAFREKVRAR-FHGVIIGAGAY-TAEKA 306 (362)
T ss_pred cCCCCCCHHHHHHH-HHHHHHHcCCCEEEeccccc-cCC---------ccccHHHHHHHHHH-CCCCEEEeCCC-CHHHH
Confidence 112235566 455 56677889999999986421 110 11112233444444 58999999997 89999
Q ss_pred HHHHHhC-CChhhhhHHHHhCCchhHHhHHH
Q 020423 283 NAALRKG-AHHVMVGRAAYQNPWYTLGHVDT 312 (326)
Q Consensus 283 ~~~l~~G-aD~V~iGRall~dP~l~~~~i~~ 312 (326)
+++++.| ||+|++||++++||+ |.+++.+
T Consensus 307 e~~i~~G~~D~V~~gR~~iadPd-~~~k~~~ 336 (362)
T PRK10605 307 ETLIGKGLIDAVAFGRDYIANPD-LVARLQR 336 (362)
T ss_pred HHHHHcCCCCEEEECHHhhhCcc-HHHHHhc
Confidence 9999977 999999999999999 5666665
|
|
| >PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-39 Score=332.68 Aligned_cols=259 Identities=18% Similarity=0.175 Sum_probs=199.7
Q ss_pred ccccccCCccccccCeecCCcEEEccCCC-------CChHHHHHH-HHHcCCCcEEEecceeecccc---------cccc
Q 020423 50 TQNIILHTKAEMVARQYLPPWFSVAPMMD-------WTDNHYRTL-ARLISKHAWLYTEMLAAETII---------YQQG 112 (326)
Q Consensus 50 ~~~~~~l~~p~~ig~~~l~nrivlAPM~~-------~s~~~~r~~-~~~~Gg~gli~te~~~~~~~~---------~~~~ 112 (326)
..++..||+|++||+++|||||+++||+. .|+.++.+| .++.||+|||+||.+.+++.. ++++
T Consensus 393 ~~~~~~Lf~P~~i~~~~l~NRi~~~pm~~~~~~~g~~t~~~~~~y~~rA~gG~glii~e~~~v~~~g~~~~~~~~~~~d~ 472 (765)
T PRK08255 393 ARPPPPMFTPFRLRGLTLKNRVVVSPMAMYSAVDGVPGDFHLVHLGARALGGAGLVMTEMTCVSPEGRITPGCPGLYNDE 472 (765)
T ss_pred CCCcccccCccccCCEeeCCCccccCcccccCCCCCCCHHHHHHHHHHHcCCCcEEEECCeEECCCcCCCCCCCccCCHH
Confidence 44568899999999999999999999964 477888887 556799999999998886532 2333
Q ss_pred chhhhhh----cCCC-CCcEEEEecCC-------------------------------------------------CHHH
Q 020423 113 NLDRFLA----FSPE-QHPIVLQIGGS-------------------------------------------------NLDN 138 (326)
Q Consensus 113 ~~~~~~~----~~~~-~~piivQL~g~-------------------------------------------------~~~~ 138 (326)
+++.+.+ +|++ +.++++||++. -.++
T Consensus 473 ~i~~~~~~~~~vh~~gg~~i~~QL~h~Gr~~~~~~~~~~~~~~~~~~~~~~~~pS~~~~~~~~~~p~~mt~~eI~~~i~~ 552 (765)
T PRK08255 473 QEAAWKRIVDFVHANSDAKIGIQLGHSGRKGSTRLGWEGIDEPLEEGNWPLISASPLPYLPGSQVPREMTRADMDRVRDD 552 (765)
T ss_pred HHHHHHHHHHHHHhcCCceEEEEccCCcccccccccccccccccccCCCceeCCCCCcCCCCCCCCCcCCHHHHHHHHHH
Confidence 4444432 6888 58999999530 0268
Q ss_pred HHHHHHHHHHCCCCEEEecCC---------CCCCcccCCCCccccccCCHHHHHHHHHHHHhcC--CCcEEEEeccC-CC
Q 020423 139 LAKATELANAYNYDEINLNCG---------CPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIG-VD 206 (326)
Q Consensus 139 f~~aA~~a~~aG~d~Iein~g---------~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~--~~pv~vK~r~g-~~ 206 (326)
|+++|++++++|||+||||++ ||.. |.|+|+|||+++||.+|+.||+++||+.+ ++||.+|++.. +.
T Consensus 553 f~~aA~~a~~aGfDgveih~ahGyLl~qFlsp~~-N~RtD~yGGslenR~r~~~eiv~~ir~~~~~~~~v~~ri~~~~~~ 631 (765)
T PRK08255 553 FVAAARRAAEAGFDWLELHCAHGYLLSSFISPLT-NQRTDEYGGSLENRLRYPLEVFRAVRAVWPAEKPMSVRISAHDWV 631 (765)
T ss_pred HHHHHHHHHHcCCCEEEEecccchHHHHhcCCCC-CCCCCCCCCCHHHHhHHHHHHHHHHHHhcCCCCeeEEEEcccccc
Confidence 999999999999999999999 8985 69999999999999999999999999988 47999999973 32
Q ss_pred C-CccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCcc-HHHHHHHHhcCCCceEEEeCCCCCHHHHHH
Q 020423 207 D-HDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLK-YEYYYALLRDFPDLTFTLNGGINTVDEVNA 284 (326)
Q Consensus 207 ~-~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~-~~~i~~i~~~~~~iPVIa~GgI~s~~da~~ 284 (326)
+ ..+.++..+ +++.+++.|+|+|+||++...... . ...++.. ..+..++++ .+++||+++|+|++++++++
T Consensus 632 ~~g~~~~~~~~-~~~~l~~~g~d~i~vs~g~~~~~~-~----~~~~~~~~~~~~~~ik~-~~~~pv~~~G~i~~~~~a~~ 704 (765)
T PRK08255 632 EGGNTPDDAVE-IARAFKAAGADLIDVSSGQVSKDE-K----PVYGRMYQTPFADRIRN-EAGIATIAVGAISEADHVNS 704 (765)
T ss_pred CCCCCHHHHHH-HHHHHHhcCCcEEEeCCCCCCcCC-C----CCcCccccHHHHHHHHH-HcCCEEEEeCCCCCHHHHHH
Confidence 2 234666665 566778899999999965321100 0 0111111 233344444 45999999999999999999
Q ss_pred HHHhC-CChhhhhHHHHhCCchhHHhHHHhhhC
Q 020423 285 ALRKG-AHHVMVGRAAYQNPWYTLGHVDTAIYG 316 (326)
Q Consensus 285 ~l~~G-aD~V~iGRall~dP~l~~~~i~~~~~~ 316 (326)
+++.| ||+|++||++|+||+|..+.+.+...+
T Consensus 705 ~l~~g~~D~v~~gR~~l~dP~~~~~~~~~~~~~ 737 (765)
T PRK08255 705 IIAAGRADLCALARPHLADPAWTLHEAAEIGYR 737 (765)
T ss_pred HHHcCCcceeeEcHHHHhCccHHHHHHHHcCCC
Confidence 99955 999999999999998767777765554
|
|
| >cd02911 arch_FMN Archeal FMN-binding domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=260.91 Aligned_cols=209 Identities=22% Similarity=0.310 Sum_probs=161.8
Q ss_pred cEEEccCCCCChHHHHHHHHHcCCCcEE--------------------EecceeeccccccccchhhhhhcCCCCCcEEE
Q 020423 70 WFSVAPMMDWTDNHYRTLARLISKHAWL--------------------YTEMLAAETIIYQQGNLDRFLAFSPEQHPIVL 129 (326)
Q Consensus 70 rivlAPM~~~s~~~~r~~~~~~Gg~gli--------------------~te~~~~~~~~~~~~~~~~~~~~~~~~~piiv 129 (326)
|+++|||++.||..|+......+|.+++ .+|+++.+...+-.+.++ .++..+.|+++
T Consensus 1 ~~~lApMag~td~~f~~~~~~~~g~~~~Gg~~~d~~~~~aa~~~~~~~~~ef~~~~~~~~~~~~~~---~~~~~~~p~~v 77 (233)
T cd02911 1 PVALASMAGITDGDFCRKRADHAGLVFLGGYNLDERTIEAARKLVKRGRKEFLPDDPLEFIEGEIK---ALKDSNVLVGV 77 (233)
T ss_pred CceeeecCCCcCHHHHHhhCccCCEEEEcccccCHHHHHHHHHHHhcCCccccccchHHHHHHHHH---HhhccCCeEEE
Confidence 5799999999999999865444556555 223332221111111111 23445679999
Q ss_pred EecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCc
Q 020423 130 QIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHD 209 (326)
Q Consensus 130 QL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~ 209 (326)
|+.|++++++.++|+.+.+. +|+||||+|||+....+.+ +|+.|+.+++.+.++++++++ .++||++|+|.+++ .
T Consensus 78 qi~g~~~~~~~~aa~~~~~~-~~~ielN~gCP~~~v~~~g-~G~~Ll~~p~~l~eiv~avr~-~~~pVsvKir~g~~--~ 152 (233)
T cd02911 78 NVRSSSLEPLLNAAALVAKN-AAILEINAHCRQPEMVEAG-AGEALLKDPERLSEFIKALKE-TGVPVSVKIRAGVD--V 152 (233)
T ss_pred EecCCCHHHHHHHHHHHhhc-CCEEEEECCCCcHHHhcCC-cchHHcCCHHHHHHHHHHHHh-cCCCEEEEEcCCcC--c
Confidence 99999999999999999886 5999999999998766555 599999999999999999997 69999999999986 2
Q ss_pred cHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhC
Q 020423 210 SYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKG 289 (326)
Q Consensus 210 ~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~G 289 (326)
+..+ +++.++++|+|.||++.+.. | .+.+|+.+++++ +++|||+||||.|++++.+++++|
T Consensus 153 ~~~~----la~~l~~aG~d~ihv~~~~~---g---------~~ad~~~I~~i~---~~ipVIgnGgI~s~eda~~~l~~G 213 (233)
T cd02911 153 DDEE----LARLIEKAGADIIHVDAMDP---G---------NHADLKKIRDIS---TELFIIGNNSVTTIESAKEMFSYG 213 (233)
T ss_pred CHHH----HHHHHHHhCCCEEEECcCCC---C---------CCCcHHHHHHhc---CCCEEEEECCcCCHHHHHHHHHcC
Confidence 2323 45677889999998875432 1 124578777764 489999999999999999999999
Q ss_pred CChhhhhHHHHhCCchhH
Q 020423 290 AHHVMVGRAAYQNPWYTL 307 (326)
Q Consensus 290 aD~V~iGRall~dP~l~~ 307 (326)
||+||+||+ .|||+|.
T Consensus 214 aD~VmiGR~--~~p~~~~ 229 (233)
T cd02911 214 ADMVSVARA--SLPENIE 229 (233)
T ss_pred CCEEEEcCC--CCchHHH
Confidence 999999999 9999653
|
This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown. |
| >TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-33 Score=262.71 Aligned_cols=237 Identities=20% Similarity=0.288 Sum_probs=180.2
Q ss_pred cccccCeecCCcEEEcc-CCCCChHHHHHHHHHcCCCcEEEecceeecccc-------------------ccccchhhhh
Q 020423 59 AEMVARQYLPPWFSVAP-MMDWTDNHYRTLARLISKHAWLYTEMLAAETII-------------------YQQGNLDRFL 118 (326)
Q Consensus 59 p~~ig~~~l~nrivlAP-M~~~s~~~~r~~~~~~Gg~gli~te~~~~~~~~-------------------~~~~~~~~~~ 118 (326)
+.+++|++++||+++|| |.+.++..++.+++. |+|+++|+.+..++.. ..+...+.++
T Consensus 2 ~~~~~g~~l~npi~~aag~~~~~~~~~~~~~~~--G~g~iv~kt~~~~~~~gn~~pr~~~~~~~~~n~~gl~~~g~~~~~ 79 (300)
T TIGR01037 2 EVELFGIRFKNPLILASGIMGSGVESLRRIDRS--GAGAVVTKSIGLEPRPGYRNPTIVETPCGMLNAIGLQNPGVEAFL 79 (300)
T ss_pred cEEECCEECCCCCEeCCcCCCCCHHHHHHHHHc--CCcEEEeCccccccccCCCCCeEEecccHHhhhccCCCcCHHHHH
Confidence 45789999999999999 478899999987764 6999999766655321 0011112222
Q ss_pred h-----cCCCCCcEEEEecCCCHHHHHHHHHHHHHCC--CCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHh
Q 020423 119 A-----FSPEQHPIVLQIGGSNLDNLAKATELANAYN--YDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAA 191 (326)
Q Consensus 119 ~-----~~~~~~piivQL~g~~~~~f~~aA~~a~~aG--~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~ 191 (326)
+ .++.+.|+++||+|.++++|.++|+.+++++ +|+||||++||+.+ .||..+.++++++.|+++++|+
T Consensus 80 ~~~~~~~~~~~~pl~~qi~g~~~~~~~~~a~~~~~~~~~~d~ielN~~cP~~~-----~~g~~l~~~~~~~~eiv~~vr~ 154 (300)
T TIGR01037 80 EELKPVREEFPTPLIASVYGSSVEEFAEVAEKLEKAPPYVDAYELNLSCPHVK-----GGGIAIGQDPELSADVVKAVKD 154 (300)
T ss_pred HHHHHHhccCCCcEEEEeecCCHHHHHHHHHHHHhccCccCEEEEECCCCCCC-----CCccccccCHHHHHHHHHHHHH
Confidence 1 2344579999999999999999999999874 99999999999853 2688888999999999999999
Q ss_pred cCCCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcc---------------cCCCCcCCcCCCCCccHH
Q 020423 192 NTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKAL---------------LNGISPAENRTIPPLKYE 256 (326)
Q Consensus 192 ~~~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~---------------~~g~~~~~~~~~~~~~~~ 256 (326)
.+++||++|++.+.+ +..+ +++.++++|+|+|++|++... .+|.++ +...+..++
T Consensus 155 ~~~~pv~vKi~~~~~------~~~~-~a~~l~~~G~d~i~v~nt~~~~~~~~~~~~~~~~~~~gg~sg---~~~~~~~l~ 224 (300)
T TIGR01037 155 KTDVPVFAKLSPNVT------DITE-IAKAAEEAGADGLTLINTLRGMKIDIKTGKPILANKTGGLSG---PAIKPIALR 224 (300)
T ss_pred hcCCCEEEECCCChh------hHHH-HHHHHHHcCCCEEEEEccCCccccccccCceeeCCCCccccc---hhhhHHHHH
Confidence 999999999986432 2333 456678899999999864321 011111 112223356
Q ss_pred HHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhCCchhHHhHHHhh
Q 020423 257 YYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAI 314 (326)
Q Consensus 257 ~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~dP~l~~~~i~~~~ 314 (326)
.++++++.. ++|||++|||.+++++.++++.|||+||+||+++.||++ .+++.+.+
T Consensus 225 ~v~~i~~~~-~ipvi~~GGI~s~~da~~~l~~GAd~V~igr~~l~~p~~-~~~i~~~l 280 (300)
T TIGR01037 225 MVYDVYKMV-DIPIIGVGGITSFEDALEFLMAGASAVQVGTAVYYRGFA-FKKIIEGL 280 (300)
T ss_pred HHHHHHhcC-CCCEEEECCCCCHHHHHHHHHcCCCceeecHHHhcCchH-HHHHHHHH
Confidence 777777654 899999999999999999999999999999999999985 55555544
|
This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase. |
| >cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-31 Score=249.22 Aligned_cols=236 Identities=22% Similarity=0.323 Sum_probs=179.1
Q ss_pred ccccCeecCCcEEEcc-CCCCChHHHHHHHHHcCCCcEEEecceeecccccccc-------------------chhhhhh
Q 020423 60 EMVARQYLPPWFSVAP-MMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQG-------------------NLDRFLA 119 (326)
Q Consensus 60 ~~ig~~~l~nrivlAP-M~~~s~~~~r~~~~~~Gg~gli~te~~~~~~~~~~~~-------------------~~~~~~~ 119 (326)
.+++|++++||+++|. +.+ +...++.++. .||+|.++++.+..++...+.. ..+.+++
T Consensus 2 ~~~~G~~~~nP~~~aag~~~-~~~~~~~~~~-~g~~g~v~~~ti~~~~~~~~~~p~~~~~~~~~~n~~g~~~~g~~~~~~ 79 (296)
T cd04740 2 VELAGLRLKNPVILASGTFG-FGEELSRVAD-LGKLGAIVTKSITLEPREGNPPPRVVETPGGMLNAIGLQNPGVEAFLE 79 (296)
T ss_pred eEECCEEcCCCCEECCCCCC-CHHHHHHHHh-cCCceEEEECCcCCCCCCCCCCCeEEecCcceeeecCCCCcCHHHHHH
Confidence 5688999999999984 222 7777777655 4679999999998775431111 1122222
Q ss_pred -----cCCCCCcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCC
Q 020423 120 -----FSPEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTN 194 (326)
Q Consensus 120 -----~~~~~~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~ 194 (326)
.++.+.|+++||.+.++++|+++|++++++|+|+||||++||+.+ .+ |..+.++++++.++++++|+.++
T Consensus 80 ~~~~~~~~~~~p~ivsi~g~~~~~~~~~a~~~~~~G~d~iElN~~cP~~~-~~----g~~~~~~~~~~~eiv~~vr~~~~ 154 (296)
T cd04740 80 ELLPWLREFGTPVIASIAGSTVEEFVEVAEKLADAGADAIELNISCPNVK-GG----GMAFGTDPEAVAEIVKAVKKATD 154 (296)
T ss_pred HHHHHhhcCCCcEEEEEecCCHHHHHHHHHHHHHcCCCEEEEECCCCCCC-CC----cccccCCHHHHHHHHHHHHhccC
Confidence 144578999999999999999999999999999999999999853 32 55666899999999999999999
Q ss_pred CcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcc---------------cCCCCcCCcCCCCCccHHHHH
Q 020423 195 VPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKAL---------------LNGISPAENRTIPPLKYEYYY 259 (326)
Q Consensus 195 ~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~---------------~~g~~~~~~~~~~~~~~~~i~ 259 (326)
+||++|++.+.+ +..+ +++.++++|+|.|+++..... .++.++ +...+..++.++
T Consensus 155 ~Pv~vKl~~~~~------~~~~-~a~~~~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg---~~~~~~~~~~i~ 224 (296)
T cd04740 155 VPVIVKLTPNVT------DIVE-IARAAEEAGADGLTLINTLKGMAIDIETRKPILGNVTGGLSG---PAIKPIALRMVY 224 (296)
T ss_pred CCEEEEeCCCch------hHHH-HHHHHHHcCCCEEEEECCCcccccccccCceeecCCcceecC---cccchHHHHHHH
Confidence 999999987532 2222 455667899999998643210 012222 223344577888
Q ss_pred HHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhCCchhHHhHHHhh
Q 020423 260 ALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAI 314 (326)
Q Consensus 260 ~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~dP~l~~~~i~~~~ 314 (326)
++++.. ++|||++|||.+++++.++++.|||+|++||+++.||++ .+++.+.+
T Consensus 225 ~i~~~~-~ipii~~GGI~~~~da~~~l~~GAd~V~igra~l~~p~~-~~~i~~~l 277 (296)
T cd04740 225 QVYKAV-EIPIIGVGGIASGEDALEFLMAGASAVQVGTANFVDPEA-FKEIIEGL 277 (296)
T ss_pred HHHHhc-CCCEEEECCCCCHHHHHHHHHcCCCEEEEchhhhcChHH-HHHHHHHH
Confidence 887765 899999999999999999999999999999999999995 55555544
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. |
| >PRK07259 dihydroorotate dehydrogenase 1B; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.5e-30 Score=239.26 Aligned_cols=237 Identities=22% Similarity=0.318 Sum_probs=177.7
Q ss_pred cccccCeecCCcEEEcc-CCCCChHHHHHHHHHcCCCcEEEecceeecccccc-------------------ccchhhhh
Q 020423 59 AEMVARQYLPPWFSVAP-MMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQ-------------------QGNLDRFL 118 (326)
Q Consensus 59 p~~ig~~~l~nrivlAP-M~~~s~~~~r~~~~~~Gg~gli~te~~~~~~~~~~-------------------~~~~~~~~ 118 (326)
+.++.|++++||+++|. +.+.+....+.+. . .|+|.+.+..+..++.... +...+.++
T Consensus 3 ~~~~~G~~~~nPv~~aag~~~~~~~~~~~~~-~-~g~g~v~~kti~~~~~~g~~~pr~~~~~~~~~n~~g~~~~g~~~~~ 80 (301)
T PRK07259 3 SVELPGLKLKNPVMPASGTFGFGGEYARFYD-L-NGLGAIVTKSTTLEPREGNPTPRIAETPGGMLNAIGLQNPGVDAFI 80 (301)
T ss_pred ceEECCEECCCCcEECCcCCCCCHHHHHHhh-h-cCCcEEEeCCCCCCCCCCCCCCcEEecCCceeecCCCCCcCHHHHH
Confidence 45788999999999987 5565554444432 3 4599999988776542200 11112222
Q ss_pred h-----cCCCCCcEEEEecCCCHHHHHHHHHHHHHCC-CCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhc
Q 020423 119 A-----FSPEQHPIVLQIGGSNLDNLAKATELANAYN-YDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAAN 192 (326)
Q Consensus 119 ~-----~~~~~~piivQL~g~~~~~f~~aA~~a~~aG-~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~ 192 (326)
+ ..+.+.|+++||.++++++|+++|++++++| +|+||||++||+.. .+ |..+.++++++.|++++||+.
T Consensus 81 ~~~~~~~~~~~~p~i~si~g~~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~---~g--g~~~~~~~~~~~eiv~~vr~~ 155 (301)
T PRK07259 81 EEELPWLEEFDTPIIANVAGSTEEEYAEVAEKLSKAPNVDAIELNISCPNVK---HG--GMAFGTDPELAYEVVKAVKEV 155 (301)
T ss_pred HHHHHHHhccCCcEEEEeccCCHHHHHHHHHHHhccCCcCEEEEECCCCCCC---CC--ccccccCHHHHHHHHHHHHHh
Confidence 2 2234689999999999999999999999999 99999999999842 11 556779999999999999999
Q ss_pred CCCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcc---------------cCCCCcCCcCCCCCccHHH
Q 020423 193 TNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKAL---------------LNGISPAENRTIPPLKYEY 257 (326)
Q Consensus 193 ~~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~---------------~~g~~~~~~~~~~~~~~~~ 257 (326)
+++||.+|++...+ +..+ +++.++++|+|.|++++.... .+|+++ +.+.+..+++
T Consensus 156 ~~~pv~vKl~~~~~------~~~~-~a~~l~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg---~~~~p~~l~~ 225 (301)
T PRK07259 156 VKVPVIVKLTPNVT------DIVE-IAKAAEEAGADGLSLINTLKGMAIDIKTRKPILANVTGGLSG---PAIKPIALRM 225 (301)
T ss_pred cCCCEEEEcCCCch------hHHH-HHHHHHHcCCCEEEEEccccccccccccCceeecCCcCccCC---cCcccccHHH
Confidence 99999999997432 2233 456678899999998653211 112222 2334556788
Q ss_pred HHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhCCchhHHhHHHhh
Q 020423 258 YYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAI 314 (326)
Q Consensus 258 i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~dP~l~~~~i~~~~ 314 (326)
++++++.. ++|||++|||.|++++.++++.|||+||+||+++.||++ .+++.+.+
T Consensus 226 v~~i~~~~-~ipvi~~GGI~~~~da~~~l~aGAd~V~igr~ll~~P~~-~~~i~~~l 280 (301)
T PRK07259 226 VYQVYQAV-DIPIIGMGGISSAEDAIEFIMAGASAVQVGTANFYDPYA-FPKIIEGL 280 (301)
T ss_pred HHHHHHhC-CCCEEEECCCCCHHHHHHHHHcCCCceeEcHHHhcCcHH-HHHHHHHH
Confidence 88887764 899999999999999999999999999999999999995 55565555
|
|
| >TIGR00736 nifR3_rel_arch TIM-barrel protein, putative | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-29 Score=225.46 Aligned_cols=205 Identities=17% Similarity=0.208 Sum_probs=160.7
Q ss_pred CCCCChHHHHHHHHHcCCCcEEEecceeecccc----------------ccccchhhhh-----hcCCCCCcEEEEecCC
Q 020423 76 MMDWTDNHYRTLARLISKHAWLYTEMLAAETII----------------YQQGNLDRFL-----AFSPEQHPIVLQIGGS 134 (326)
Q Consensus 76 M~~~s~~~~r~~~~~~Gg~gli~te~~~~~~~~----------------~~~~~~~~~~-----~~~~~~~piivQL~g~ 134 (326)
|+|.||.+|..... ..+|+++.+.++.+... .+.+....++ ++ ++..|+++|+.+.
T Consensus 1 mag~~d~~~~~~~~--~~~~~~~lgg~~~d~~t~~a~~~~~~rgr~ef~~~~e~~~~~i~~e~~~~-~~~~~vivnv~~~ 77 (231)
T TIGR00736 1 MAGITDAEFCRKFK--DLFAIVTLGGYNADRATYKASRDIEKRGRKEFSFNLEEFNSYIIEQIKKA-ESRALVSVNVRFV 77 (231)
T ss_pred CCCcchHHHHHhcC--cCcCEEEECCccCCHHHHHHHHHHHHcCCcccCcCcccHHHHHHHHHHHH-hhcCCEEEEEecC
Confidence 78999998875433 23788888887765321 1111111222 23 3566999999999
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHH
Q 020423 135 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQL 214 (326)
Q Consensus 135 ~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~ 214 (326)
++++|.++++.+.+ ++|+||||+|||++...+.+ +|+.|+++++.+.++++++++ .++||+||+|+++++.+ .
T Consensus 78 ~~ee~~~~a~~v~~-~~d~IdiN~gCP~~~v~~~g-~G~~Ll~dp~~l~~iv~av~~-~~~PVsvKiR~~~~~~~-~--- 150 (231)
T TIGR00736 78 DLEEAYDVLLTIAE-HADIIEINAHCRQPEITEIG-IGQELLKNKELLKEFLTKMKE-LNKPIFVKIRGNCIPLD-E--- 150 (231)
T ss_pred CHHHHHHHHHHHhc-CCCEEEEECCCCcHHHcCCC-CchhhcCCHHHHHHHHHHHHc-CCCcEEEEeCCCCCcch-H---
Confidence 99999999999988 69999999999998766644 699999999999999999994 58999999999875432 2
Q ss_pred HHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhh
Q 020423 215 CDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVM 294 (326)
Q Consensus 215 ~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~ 294 (326)
.+ +++.++++|+|+|+||.+.. |. +..+|+.++++++...++|||+||||.|++|+.+++++|||+||
T Consensus 151 ~~-~a~~l~~aGad~i~Vd~~~~---g~--------~~a~~~~I~~i~~~~~~ipIIgNGgI~s~eda~e~l~~GAd~Vm 218 (231)
T TIGR00736 151 LI-DALNLVDDGFDGIHVDAMYP---GK--------PYADMDLLKILSEEFNDKIIIGNNSIDDIESAKEMLKAGADFVS 218 (231)
T ss_pred HH-HHHHHHHcCCCEEEEeeCCC---CC--------chhhHHHHHHHHHhcCCCcEEEECCcCCHHHHHHHHHhCCCeEE
Confidence 22 46677899999999986432 21 22569999998876535999999999999999999999999999
Q ss_pred hhHHHHhC
Q 020423 295 VGRAAYQN 302 (326)
Q Consensus 295 iGRall~d 302 (326)
+||+++.+
T Consensus 219 vgR~~l~~ 226 (231)
T TIGR00736 219 VARAILKG 226 (231)
T ss_pred EcHhhccC
Confidence 99999876
|
Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins. |
| >KOG2333 consensus Uncharacterized conserved protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.7e-29 Score=236.94 Aligned_cols=243 Identities=20% Similarity=0.284 Sum_probs=201.8
Q ss_pred ccccccCeecCCcEEEccCCCCChHHHHHHHHHcCCCcEEEecceeeccccccccchhhhhhcCCCCCcEEEEecCCCHH
Q 020423 58 KAEMVARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSNLD 137 (326)
Q Consensus 58 ~p~~ig~~~l~nrivlAPM~~~s~~~~r~~~~~~Gg~gli~te~~~~~~~~~~~~~~~~~~~~~~~~~piivQL~g~~~~ 137 (326)
.|-.-+-+.++.+.++||++++.+.+||++|+..| ++..+.||....+++.+...--.+++.|....-++|||.|+.++
T Consensus 254 ~p~eKk~lD~r~K~~LaPLTTvGNLPFRRlCk~lG-ADvTcgEMA~~tpLlqG~~sEWALlkRH~sEdiFGVQlag~~pd 332 (614)
T KOG2333|consen 254 RPQEKKLLDFRDKKYLAPLTTVGNLPFRRLCKKLG-ADVTCGEMAMATPLLQGTASEWALLKRHQSEDIFGVQLAGSKPD 332 (614)
T ss_pred ChhcccccccccceeeccccccCCccHHHHHHHhC-CccchhHHHHHHHHhcccchhhhhhhhcCcccceeeEeccCChH
Confidence 45556678889999999999999999999999998 89999999999888876654445667777667899999999999
Q ss_pred HHHHHHHHHHH-CCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC-CCcEEEEeccCCCCCccH-HHH
Q 020423 138 NLAKATELANA-YNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSY-NQL 214 (326)
Q Consensus 138 ~f~~aA~~a~~-aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~-~~pv~vK~r~g~~~~~~~-~e~ 214 (326)
...++|+.+.+ .-.|.|+||+|||..-+.+++. |++|++||..+.+++++..... ++|++||+|.|..+...+ .++
T Consensus 333 t~~kaaq~i~e~~~VDFIDlN~GCPIDlvy~qG~-GsALl~rp~rl~~~l~~m~~vs~~iPiTVKiRTG~keg~~~a~~L 411 (614)
T KOG2333|consen 333 TAAKAAQVIAETCDVDFIDLNMGCPIDLVYRQGG-GSALLNRPARLIRILRAMNAVSGDIPITVKIRTGTKEGHPVAHEL 411 (614)
T ss_pred HHHHHHHHHHhhcceeeeeccCCCChheeeccCC-cchhhcCcHHHHHHHHHHHHhccCCCeEEEEecccccCchhHHHH
Confidence 99999997665 5689999999999998888887 9999999999999999987766 469999999998776543 333
Q ss_pred HHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCC-ceEEEeCCCCCHHHHHHHHH-hC-CC
Q 020423 215 CDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPD-LTFTLNGGINTVDEVNAALR-KG-AH 291 (326)
Q Consensus 215 ~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~-iPVIa~GgI~s~~da~~~l~-~G-aD 291 (326)
+..+..+-|+++|++|||...+. +....+|+++.++.+.... +|+|+||+|.|.+|..+-+. .+ +|
T Consensus 412 ---i~~i~newg~savTlHGRSRqQR--------YTK~AnWdYi~e~a~~ak~~l~liGNGDi~S~eDw~~~~~~~p~v~ 480 (614)
T KOG2333|consen 412 ---IPRIVNEWGASAVTLHGRSRQQR--------YTKSANWDYIEECADKAKSALPLIGNGDILSWEDWYERLNQNPNVD 480 (614)
T ss_pred ---HHHHhhccCcceEEecCchhhhh--------hhcccChHHHHHHHHhcccCceeEecCccccHHHHHHHhhcCCCcc
Confidence 44454478999999999976433 3345679999998877655 99999999999999888777 44 99
Q ss_pred hhhhhHHHHhCCchhHHhHHHhh
Q 020423 292 HVMVGRAAYQNPWYTLGHVDTAI 314 (326)
Q Consensus 292 ~V~iGRall~dP~l~~~~i~~~~ 314 (326)
.|||||++|..||+| ..|++.-
T Consensus 481 svMIaRGALIKPWIF-tEIkeqq 502 (614)
T KOG2333|consen 481 SVMIARGALIKPWIF-TEIKEQQ 502 (614)
T ss_pred eEEeeccccccchHh-hhhhhhh
Confidence 999999999999965 4555543
|
|
| >cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.96 E-value=2e-28 Score=227.88 Aligned_cols=233 Identities=19% Similarity=0.213 Sum_probs=173.0
Q ss_pred cccCeecCCcEEEccCCCCChHHHHHHHHHcCCCcEEEecceeecccccc----------------------------cc
Q 020423 61 MVARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQ----------------------------QG 112 (326)
Q Consensus 61 ~ig~~~l~nrivlAPM~~~s~~~~r~~~~~~Gg~gli~te~~~~~~~~~~----------------------------~~ 112 (326)
++.|++++||+++|-.....+.++....... |+|.+.+..+..++...+ +.
T Consensus 2 ~~~G~~~~nPv~~aag~~~~~~~~~~~~~~~-g~g~vv~kti~~~~~~~n~~pr~~~~~~~~~~~~~~~~~~n~~g~~~~ 80 (289)
T cd02810 2 NFLGLKLKNPFGVAAGPLLKTGELIARAAAA-GFGAVVYKTVTLHPRPGNPLPRVARLPPEGESYPEQLGILNSFGLPNL 80 (289)
T ss_pred eECCEECCCCCEeCCCCCCCCHHHHHHHHHc-CCCeEEeCcccCCCCCCCCCCCEEEeccccccCcccceEeecCCCCCc
Confidence 4678999999999988764454444433333 489999887776533110 00
Q ss_pred chhhhh----hc-CC-CCCcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHH
Q 020423 113 NLDRFL----AF-SP-EQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAM 186 (326)
Q Consensus 113 ~~~~~~----~~-~~-~~~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv 186 (326)
..+.++ .. +. .+.|+++||.+.+++++.++++.+.++|+|+||||++||+... +..++++++++.+++
T Consensus 81 g~~~~~~~i~~~~~~~~~~pvi~si~g~~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~------~~~~~~~~~~~~eiv 154 (289)
T cd02810 81 GLDVWLQDIAKAKKEFPGQPLIASVGGSSKEDYVELARKIERAGAKALELNLSCPNVGG------GRQLGQDPEAVANLL 154 (289)
T ss_pred CHHHHHHHHHHHHhccCCCeEEEEeccCCHHHHHHHHHHHHHhCCCEEEEEcCCCCCCC------CcccccCHHHHHHHH
Confidence 011111 11 22 4789999999999999999999999999999999999998542 334678999999999
Q ss_pred HHHHhcCCCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCccc---------------CCCCcCCcCCCC
Q 020423 187 SVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALL---------------NGISPAENRTIP 251 (326)
Q Consensus 187 ~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~---------------~g~~~~~~~~~~ 251 (326)
+++|+.+++|+++|++.+++ .+++.+ +++.++++|+|+|+++++.... .|.++ ..+.
T Consensus 155 ~~vr~~~~~pv~vKl~~~~~----~~~~~~-~a~~l~~~Gad~i~~~~~~~~~~~~~~~~~~~~~~~~~g~sg---~~~~ 226 (289)
T cd02810 155 KAVKAAVDIPLLVKLSPYFD----LEDIVE-LAKAAERAGADGLTAINTISGRVVDLKTVGPGPKRGTGGLSG---APIR 226 (289)
T ss_pred HHHHHccCCCEEEEeCCCCC----HHHHHH-HHHHHHHcCCCEEEEEcccCccceecccCccccCCCCCccCc---HHHH
Confidence 99999999999999998754 223333 4556778999999999764210 01111 1122
Q ss_pred CccHHHHHHHHhcCC-CceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhC-CchhHH
Q 020423 252 PLKYEYYYALLRDFP-DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN-PWYTLG 308 (326)
Q Consensus 252 ~~~~~~i~~i~~~~~-~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~d-P~l~~~ 308 (326)
+..+++++++++... ++|||++|||.+++++.++++.|||+|++||+++.| |+++.+
T Consensus 227 ~~~~~~v~~i~~~~~~~ipiia~GGI~~~~da~~~l~~GAd~V~vg~a~~~~GP~~~~~ 285 (289)
T cd02810 227 PLALRWVARLAARLQLDIPIIGVGGIDSGEDVLEMLMAGASAVQVATALMWDGPDVIRK 285 (289)
T ss_pred HHHHHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHcCccHheEcHHHHhcCccHHHH
Confidence 334677888877654 899999999999999999999999999999999999 996444
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of |
| >cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.2e-28 Score=228.56 Aligned_cols=236 Identities=17% Similarity=0.189 Sum_probs=175.9
Q ss_pred cccccCeecCCcEEEccCC-CCChHHHHHHHHHcCCCcEEEecceeec-ccccc-------------------c------
Q 020423 59 AEMVARQYLPPWFSVAPMM-DWTDNHYRTLARLISKHAWLYTEMLAAE-TIIYQ-------------------Q------ 111 (326)
Q Consensus 59 p~~ig~~~l~nrivlAPM~-~~s~~~~r~~~~~~Gg~gli~te~~~~~-~~~~~-------------------~------ 111 (326)
+.+++|++++||+++|.=. +-+...++++... |+|.+.+..+..+ +...+ +
T Consensus 3 ~~~~~Gl~l~nPi~~aag~~~~~~~~~~~~~~~--G~Gavv~kti~~~~~~~gn~~pr~~~~~~~~~n~~g~~n~e~~s~ 80 (299)
T cd02940 3 SVTFCGIKFPNPFGLASAPPTTSYPMIRRAFEA--GWGGAVTKTLGLDKDIVTNVSPRIARLRTSGRGQIGFNNIELISE 80 (299)
T ss_pred ceEECCEEcCCCCEeCCcCCCCCHHHHHHHHHh--CCCEEEeccccCcCCCCCCCCCeEEEeCCCchhcccccCCccccc
Confidence 4678899999999999831 2244566665543 5899988877766 21100 0
Q ss_pred cchhhhhh----c-CC-CCCcEEEEecCC-CHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHH
Q 020423 112 GNLDRFLA----F-SP-EQHPIVLQIGGS-NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGE 184 (326)
Q Consensus 112 ~~~~~~~~----~-~~-~~~piivQL~g~-~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~e 184 (326)
...+.+++ + +. .+.|+++|++|. ++++|.++|++++++|+|+||||++||+.. .++ .+|..++++++.+.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~p~i~si~G~~~~~~~~~~a~~~~~~gad~ielN~sCP~~~-~~~-~~G~~l~~~~~~~~~ 158 (299)
T cd02940 81 KPLEYWLKEIRELKKDFPDKILIASIMCEYNKEDWTELAKLVEEAGADALELNFSCPHGM-PER-GMGAAVGQDPELVEE 158 (299)
T ss_pred cCHHHHHHHHHHHHhhCCCCeEEEEecCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCC-CCC-CCchhhccCHHHHHH
Confidence 00112211 1 11 257999999998 999999999999999999999999999963 333 369999999999999
Q ss_pred HHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcc--------------------cCCCCc
Q 020423 185 AMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKAL--------------------LNGISP 244 (326)
Q Consensus 185 iv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~--------------------~~g~~~ 244 (326)
+++++++.+++||+||++.+.+ ++.+ +++.++++|+|.|+++.+... .+|+++
T Consensus 159 iv~~v~~~~~~Pv~vKl~~~~~---~~~~----~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~~~~~~~~~~gg~sG 231 (299)
T cd02940 159 ICRWVREAVKIPVIAKLTPNIT---DIRE----IARAAKEGGADGVSAINTVNSLMGVDLDGTPPAPGVEGKTTYGGYSG 231 (299)
T ss_pred HHHHHHHhcCCCeEEECCCCch---hHHH----HHHHHHHcCCCEEEEecccccccccccccCCccccccCCCCcCcccC
Confidence 9999999999999999998543 2323 345567899999986543211 123333
Q ss_pred CCcCCCCCccHHHHHHHHhcCC-CceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHh-CCchhHH
Q 020423 245 AENRTIPPLKYEYYYALLRDFP-DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ-NPWYTLG 308 (326)
Q Consensus 245 ~~~~~~~~~~~~~i~~i~~~~~-~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~-dP~l~~~ 308 (326)
+.+.|..|+.++++++... ++|||++|||.+++|+.+++..|||+||+||+++. +|.++.+
T Consensus 232 ---~a~~p~~l~~v~~~~~~~~~~ipIig~GGI~~~~da~~~l~aGA~~V~i~ta~~~~g~~~~~~ 294 (299)
T cd02940 232 ---PAVKPIALRAVSQIARAPEPGLPISGIGGIESWEDAAEFLLLGASVVQVCTAVMNQGFTIVDD 294 (299)
T ss_pred ---CCcchHHHHHHHHHHHhcCCCCcEEEECCCCCHHHHHHHHHcCCChheEceeecccCCcHHHH
Confidence 2345566899999887652 89999999999999999999999999999999888 7995444
|
DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue. |
| >cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.4e-26 Score=214.15 Aligned_cols=236 Identities=19% Similarity=0.157 Sum_probs=169.7
Q ss_pred cccCeecCCcEEEccCC-CCChHHHHHHHHHcCCCcEEEecceeeccccc-------------------cccchhhhhh-
Q 020423 61 MVARQYLPPWFSVAPMM-DWTDNHYRTLARLISKHAWLYTEMLAAETIIY-------------------QQGNLDRFLA- 119 (326)
Q Consensus 61 ~ig~~~l~nrivlAPM~-~~s~~~~r~~~~~~Gg~gli~te~~~~~~~~~-------------------~~~~~~~~~~- 119 (326)
++.|++++||+++|.=. +-+...++.+.. .|+|.+.+..+..++... .+...+.+++
T Consensus 2 ~~~Gl~l~nPi~~Asg~~~~~~e~~~~~~~--~G~Gavv~ktit~~~~~gn~~pr~~~~~~~~~N~~G~~n~g~~~~~~~ 79 (294)
T cd04741 2 TPPGLTISPPLMNAAGPWCTTLEDLLELAA--SSTGAVTTRSSTLAGRPGNPEPRYYAFPLGSINSLGLPNLGLDYYLEY 79 (294)
T ss_pred ccCCeeCCCCCEECCCCCCCCHHHHHHHHH--cCCcEEEeCcccCCCCCCCCCCcEEecCccccccccCCCcCHHHHHHH
Confidence 56799999999998765 445556666554 368999888776654311 1111222221
Q ss_pred ---c----CCCCCcEEEEecCCCHHHHHHHHHHHHHC---CCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHH
Q 020423 120 ---F----SPEQHPIVLQIGGSNLDNLAKATELANAY---NYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVI 189 (326)
Q Consensus 120 ---~----~~~~~piivQL~g~~~~~f~~aA~~a~~a---G~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~av 189 (326)
. ++.+.|+++|+++. +++|.++++++.+. |+|+||||++||+.. . +..+..+++.+.++++++
T Consensus 80 i~~~~~~~~~~~~pvivsi~g~-~~~~~~~~~~~~~~~~~~ad~ielN~sCPn~~--~----~~~~~~~~~~~~~i~~~v 152 (294)
T cd04741 80 IRTISDGLPGSAKPFFISVTGS-AEDIAAMYKKIAAHQKQFPLAMELNLSCPNVP--G----KPPPAYDFDATLEYLTAV 152 (294)
T ss_pred HHHHhhhccccCCeEEEECCCC-HHHHHHHHHHHHhhccccccEEEEECCCCCCC--C----cccccCCHHHHHHHHHHH
Confidence 1 13578999999999 99999999999886 699999999999842 1 224457899999999999
Q ss_pred HhcCCCcEEEEeccCCCCCccHHHHHHHHHHHhhhC--CccEEEEecCC-----------c-------ccCCCCcCCcCC
Q 020423 190 AANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLS--PTRHFIIHSRK-----------A-------LLNGISPAENRT 249 (326)
Q Consensus 190 r~~~~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~--Gvd~I~v~~~~-----------~-------~~~g~~~~~~~~ 249 (326)
++.+++||+||++++++. +++.+ +++.+++. |+|.|++.... . .++|+++ +.
T Consensus 153 ~~~~~iPv~vKl~p~~~~----~~~~~-~a~~l~~~~~G~~gi~~~Nt~~~~~~id~~~~~~~~~~~~~~gG~SG---~~ 224 (294)
T cd04741 153 KAAYSIPVGVKTPPYTDP----AQFDT-LAEALNAFACPISFITATNTLGNGLVLDPERETVVLKPKTGFGGLAG---AY 224 (294)
T ss_pred HHhcCCCEEEEeCCCCCH----HHHHH-HHHHHhccccCCcEEEEEccCCccccccCCCCCcccCCCCCCCCcCc---hh
Confidence 999999999999998632 23333 44555667 99999963221 1 1122222 23
Q ss_pred CCCccHHHHHHHHhcCC-CceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHh-CCchhHHhHHHhh
Q 020423 250 IPPLKYEYYYALLRDFP-DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ-NPWYTLGHVDTAI 314 (326)
Q Consensus 250 ~~~~~~~~i~~i~~~~~-~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~-dP~l~~~~i~~~~ 314 (326)
+.+..+..++++++... ++|||++|||.|++|+.+++.+|||+||+||+++. +|++|.+ +.+.|
T Consensus 225 i~~~al~~v~~~~~~~~~~ipIig~GGI~s~~da~e~l~aGA~~Vqv~ta~~~~gp~~~~~-i~~~L 290 (294)
T cd04741 225 LHPLALGNVRTFRRLLPSEIQIIGVGGVLDGRGAFRMRLAGASAVQVGTALGKEGPKVFAR-IEKEL 290 (294)
T ss_pred hHHHHHHHHHHHHHhcCCCCCEEEeCCCCCHHHHHHHHHcCCCceeEchhhhhcCchHHHH-HHHHH
Confidence 33444566777776653 59999999999999999999999999999999995 9996544 45444
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. |
| >PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.6e-26 Score=224.22 Aligned_cols=239 Identities=18% Similarity=0.169 Sum_probs=174.3
Q ss_pred cccccCeecCCcEEEccCCC-CChHHHHHHHHHcCCCcEEEecceeeccccccc--------------------c-----
Q 020423 59 AEMVARQYLPPWFSVAPMMD-WTDNHYRTLARLISKHAWLYTEMLAAETIIYQQ--------------------G----- 112 (326)
Q Consensus 59 p~~ig~~~l~nrivlAPM~~-~s~~~~r~~~~~~Gg~gli~te~~~~~~~~~~~--------------------~----- 112 (326)
+.++.|++|+||+++|-=.- .+...++.+.. . |+|.+.+..+. .+..... +
T Consensus 5 ~~~~~Gl~l~nPv~~aag~~~~~~~~~~~~~~-~-g~Gavv~kti~-~~~gn~~~pr~~~~~~~~~~~~g~~n~~~~s~~ 81 (420)
T PRK08318 5 SITFCGIKSPNPFWLASAPPTNKYYNVARAFE-A-GWGGVVWKTLG-PPIVNVSSPRFGALVKEDRRFIGFNNIELITDR 81 (420)
T ss_pred eEEECCEecCCCcEeCCcCCCCCHHHHHHHHH-h-CCCEEEEeecC-CCCCCCCCCeEEEecCCCcccccccCccccccc
Confidence 46788999999999985321 24455555544 3 58888877665 2111100 0
Q ss_pred chhhhhh----c-CC-CCCcEEEEecCC-CHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHH
Q 020423 113 NLDRFLA----F-SP-EQHPIVLQIGGS-NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEA 185 (326)
Q Consensus 113 ~~~~~~~----~-~~-~~~piivQL~g~-~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~ei 185 (326)
..+.+++ + +. .+.|+++||+|. ++++|+++|+.++++|+|+||||++||+. ...++ +|..+.++++.+.++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~p~i~si~g~~~~~~~~~~a~~~~~~g~d~ielN~scP~~-~~~~~-~g~~~~~~~~~~~~i 159 (420)
T PRK08318 82 PLEVNLREIRRVKRDYPDRALIASIMVECNEEEWKEIAPLVEETGADGIELNFGCPHG-MSERG-MGSAVGQVPELVEMY 159 (420)
T ss_pred CHHHHHHHHHHHHhhCCCceEEEEeccCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCC-ccccC-CcccccCCHHHHHHH
Confidence 0111111 1 11 247899999998 89999999999999999999999999993 33333 689999999999999
Q ss_pred HHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCc--------------------ccCCCCcC
Q 020423 186 MSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKA--------------------LLNGISPA 245 (326)
Q Consensus 186 v~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~--------------------~~~g~~~~ 245 (326)
++++++.+++||+||++++.++ +.+ +++.++++|+|.|++..... ..+|+++
T Consensus 160 ~~~v~~~~~~Pv~vKl~p~~~~---~~~----~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~p~~~~~~~~gg~SG- 231 (420)
T PRK08318 160 TRWVKRGSRLPVIVKLTPNITD---IRE----PARAAKRGGADAVSLINTINSITGVDLDRMIPMPIVNGKSSHGGYCG- 231 (420)
T ss_pred HHHHHhccCCcEEEEcCCCccc---HHH----HHHHHHHCCCCEEEEecccCccccccccccCCCceecCCCCcccccc-
Confidence 9999999999999999975432 322 45667889999999532211 1223333
Q ss_pred CcCCCCCccHHHHHHHHhcC--CCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHh-CCchhHHhHHHh
Q 020423 246 ENRTIPPLKYEYYYALLRDF--PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ-NPWYTLGHVDTA 313 (326)
Q Consensus 246 ~~~~~~~~~~~~i~~i~~~~--~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~-dP~l~~~~i~~~ 313 (326)
+.+.|..|+.++++++.. .++|||++|||.|++|+.+++..|||+||+||+++. +|.+ .+++.+.
T Consensus 232 --~a~~p~~l~~v~~~~~~~~~~~ipIig~GGI~s~~da~e~i~aGA~~Vqi~ta~~~~gp~i-i~~I~~~ 299 (420)
T PRK08318 232 --PAVKPIALNMVAEIARDPETRGLPISGIGGIETWRDAAEFILLGAGTVQVCTAAMQYGFRI-VEDMISG 299 (420)
T ss_pred --hhhhHHHHHHHHHHHhccccCCCCEEeecCcCCHHHHHHHHHhCCChheeeeeeccCCchh-HHHHHHH
Confidence 345566789999988764 279999999999999999999999999999999988 6875 4444443
|
|
| >cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.6e-25 Score=209.88 Aligned_cols=234 Identities=15% Similarity=0.156 Sum_probs=167.9
Q ss_pred cccccCeecCCcEEEc--cCCCCChHHHHHHHHHcCCCcEEEecceeecccc----------c-----------------
Q 020423 59 AEMVARQYLPPWFSVA--PMMDWTDNHYRTLARLISKHAWLYTEMLAAETII----------Y----------------- 109 (326)
Q Consensus 59 p~~ig~~~l~nrivlA--PM~~~s~~~~r~~~~~~Gg~gli~te~~~~~~~~----------~----------------- 109 (326)
+.++.|++++||+++| |. +.+...++.+. . .|+|.+.+..+..++.. .
T Consensus 3 ~v~~~Gl~l~nPv~~ASg~~-~~~~e~~~~~~-~-~G~Gavv~ktit~~~~~~~gn~~pr~~~~~~~~~~~~~~in~~g~ 79 (325)
T cd04739 3 STTYLGLSLKNPLVASASPL-SRNLDNIRRLE-D-AGAGAIVLPSLFEEQIEREAQELDRFLTYGSSFAEALSYFPEYGR 79 (325)
T ss_pred eEEECCEecCCCCEeCCcCC-CCCHHHHHHHH-H-CCCcEEEecccchhhhhhcCCCCCceEeecccCcCcccccccccc
Confidence 3578899999999996 44 34445555543 2 35888888877655310 0
Q ss_pred cccchhhhhh----c-CCCCCcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHH
Q 020423 110 QQGNLDRFLA----F-SPEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGE 184 (326)
Q Consensus 110 ~~~~~~~~~~----~-~~~~~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~e 184 (326)
.+...+.+++ . ...+.|+++|+++.++++|.++++.++++|+|+||||++||... .+.+|+++ .+.+.+
T Consensus 80 ~n~g~~~~~~~i~~~~~~~~~pvi~si~g~~~~~~~~~a~~~~~~gad~iElN~s~~~~~---~~~~g~~~---~~~~~e 153 (325)
T cd04739 80 YNLGPEEYLELIRRAKRAVSIPVIASLNGVSAGGWVDYARQIEEAGADALELNIYALPTD---PDISGAEV---EQRYLD 153 (325)
T ss_pred cCcCHHHHHHHHHHHHhccCCeEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCC---CCcccchH---HHHHHH
Confidence 0111122221 1 22368999999999999999999999999999999999996422 35567654 467899
Q ss_pred HHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCccc------------CCCCcCCcCCCCC
Q 020423 185 AMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALL------------NGISPAENRTIPP 252 (326)
Q Consensus 185 iv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~------------~g~~~~~~~~~~~ 252 (326)
+++++++.+++||+||+++..++ +.+ +++.++++|+|.|+++++.... .|+++ +...+
T Consensus 154 iv~~v~~~~~iPv~vKl~p~~~~---~~~----~a~~l~~~Gadgi~~~nt~~~~~id~~~~~~~~~~glSG---~~~~~ 223 (325)
T cd04739 154 ILRAVKSAVTIPVAVKLSPFFSA---LAH----MAKQLDAAGADGLVLFNRFYQPDIDLETLEVVPNLLLSS---PAEIR 223 (325)
T ss_pred HHHHHHhccCCCEEEEcCCCccC---HHH----HHHHHHHcCCCeEEEEcCcCCCCccccccceecCCCcCC---ccchh
Confidence 99999999999999999986432 323 3456678999999999875210 11222 22334
Q ss_pred ccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhC-CchhHHhHHHh
Q 020423 253 LKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN-PWYTLGHVDTA 313 (326)
Q Consensus 253 ~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~d-P~l~~~~i~~~ 313 (326)
..+++++++.+.. ++|||++|||.|++|+.+++..|||+||+||+++.+ |.+ ..++.+.
T Consensus 224 ~al~~v~~v~~~~-~ipIig~GGI~s~~Da~e~l~aGA~~Vqv~ta~~~~gp~~-~~~i~~~ 283 (325)
T cd04739 224 LPLRWIAILSGRV-KASLAASGGVHDAEDVVKYLLAGADVVMTTSALLRHGPDY-IGTLLAG 283 (325)
T ss_pred HHHHHHHHHHccc-CCCEEEECCCCCHHHHHHHHHcCCCeeEEehhhhhcCchH-HHHHHHH
Confidence 4567777777654 899999999999999999999999999999999985 985 4444433
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive. |
| >PRK05286 dihydroorotate dehydrogenase 2; Reviewed | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.5e-25 Score=211.66 Aligned_cols=236 Identities=16% Similarity=0.171 Sum_probs=169.6
Q ss_pred cccccCeecCCcEEEccCCCCChHHHHHHHHHcCCCcEEEecceeecccc-cc--------------------ccchhhh
Q 020423 59 AEMVARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETII-YQ--------------------QGNLDRF 117 (326)
Q Consensus 59 p~~ig~~~l~nrivlAPM~~~s~~~~r~~~~~~Gg~gli~te~~~~~~~~-~~--------------------~~~~~~~ 117 (326)
+.++.|++++|++++|-=..-+-..++.+. . .|+|.+.+..+..++.. +. +...+.+
T Consensus 50 ~~~~~Gl~l~nPi~~AsG~~~~~~~~~~~~-~-~G~Gavv~ktvt~~p~~gn~~pr~~~~~~~~~~~N~~gl~n~g~~~~ 127 (344)
T PRK05286 50 PVTVMGLTFPNPVGLAAGFDKNGEAIDALG-A-LGFGFVEVGTVTPRPQPGNPKPRLFRLPEDEALINRMGFNNDGADAL 127 (344)
T ss_pred ceEECCEECCCCCEECCCCCCChHHHHHHH-H-cCCCEEEeCCcCCCCCCCCCCCCEEecccccccccCCCCCCHhHHHH
Confidence 568899999999988764333334455433 2 45899998887765221 00 1111222
Q ss_pred hh----cCCCCCcEEEEecCC-------CHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHH
Q 020423 118 LA----FSPEQHPIVLQIGGS-------NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAM 186 (326)
Q Consensus 118 ~~----~~~~~~piivQL~g~-------~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv 186 (326)
++ .. .+.|+++|+.++ ..++|++.++.+.+ ++|++|+|++||+....+ ...+++.+.|++
T Consensus 128 ~~~l~~~~-~~~pvivsI~~~~~~~~~~~~~d~~~~~~~~~~-~ad~lelN~scP~~~g~~-------~~~~~~~~~eiv 198 (344)
T PRK05286 128 AERLKKAY-RGIPLGINIGKNKDTPLEDAVDDYLICLEKLYP-YADYFTVNISSPNTPGLR-------DLQYGEALDELL 198 (344)
T ss_pred HHHHHHhc-CCCcEEEEEecCCCCCcccCHHHHHHHHHHHHh-hCCEEEEEccCCCCCCcc-------cccCHHHHHHHH
Confidence 21 12 567999999875 57899999999877 599999999999864222 247889999999
Q ss_pred HHHHhcCC-----CcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCccc------------CCCCcCCcCC
Q 020423 187 SVIAANTN-----VPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALL------------NGISPAENRT 249 (326)
Q Consensus 187 ~avr~~~~-----~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~------------~g~~~~~~~~ 249 (326)
++||+.++ +||.||++.++++ +++.+ +++.++++|+|.|++++++... +|+++ +.
T Consensus 199 ~aVr~~~~~~~~~~PV~vKlsp~~~~----~~~~~-ia~~l~~~Gadgi~~~nt~~~~~~~~~~~~~~~~gg~SG---~~ 270 (344)
T PRK05286 199 AALKEAQAELHGYVPLLVKIAPDLSD----EELDD-IADLALEHGIDGVIATNTTLSRDGLKGLPNADEAGGLSG---RP 270 (344)
T ss_pred HHHHHHHhccccCCceEEEeCCCCCH----HHHHH-HHHHHHHhCCcEEEEeCCccccccccccccCCCCCCccc---HH
Confidence 99999886 9999999986443 23333 5667788999999999875311 12222 12
Q ss_pred CCCccHHHHHHHHhcCC-CceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhC-CchhHHhHHHhh
Q 020423 250 IPPLKYEYYYALLRDFP-DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN-PWYTLGHVDTAI 314 (326)
Q Consensus 250 ~~~~~~~~i~~i~~~~~-~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~d-P~l~~~~i~~~~ 314 (326)
+.+..++.++++++... ++|||++|||.|++|+.+++..|||+||+||+++.+ |++ ..++.+.+
T Consensus 271 ~~~~~l~~v~~l~~~~~~~ipIig~GGI~s~eda~e~l~aGAd~V~v~~~~~~~gP~~-~~~i~~~L 336 (344)
T PRK05286 271 LFERSTEVIRRLYKELGGRLPIIGVGGIDSAEDAYEKIRAGASLVQIYSGLIYEGPGL-VKEIVRGL 336 (344)
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcCCCHHHHHHHHHHhCchH-HHHHHHHH
Confidence 23445778888776643 799999999999999999999999999999999875 995 55555544
|
|
| >cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2 | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.8e-25 Score=207.41 Aligned_cols=235 Identities=17% Similarity=0.197 Sum_probs=169.0
Q ss_pred cccccCeecCCcEEEccCCCCChHHHHHHHHHcCCCcEEEecceeecccc-c--------------------cccchhhh
Q 020423 59 AEMVARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETII-Y--------------------QQGNLDRF 117 (326)
Q Consensus 59 p~~ig~~~l~nrivlAPM~~~s~~~~r~~~~~~Gg~gli~te~~~~~~~~-~--------------------~~~~~~~~ 117 (326)
+.++.|++++|++++|.=..-+...++++. . .|+|.+.+..+..++.. + .+...+.+
T Consensus 40 ~~~~~Gl~l~nPi~~AsG~~~~~~~~~~~~-~-~G~Gavv~ktit~~~~~gn~~pr~~~~~~~~~~~n~~g~~n~g~~~~ 117 (327)
T cd04738 40 EVEVFGLTFPNPVGLAAGFDKNAEAIDALL-A-LGFGFVEVGTVTPRPQPGNPKPRLFRLPEDEALINRMGFNNDGADAV 117 (327)
T ss_pred ceEECCEECCCCCEeCcCCCCCHHHHHHHH-H-CCCcEEEEeccCCCCCCCCCCCCEEEccCccceeecCCCCCccHHHH
Confidence 578899999999988764333334455544 3 45899988877655211 0 01111222
Q ss_pred hh----cCCCCCcEEEEecCCC-------HHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHH
Q 020423 118 LA----FSPEQHPIVLQIGGSN-------LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAM 186 (326)
Q Consensus 118 ~~----~~~~~~piivQL~g~~-------~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv 186 (326)
++ ....+.|+++|+.+++ .++|++.++.+.+. +|++|+|++||+.. |.....+++.+.+++
T Consensus 118 ~~~l~~~~~~~~plivsi~g~~~~~~~~~~~d~~~~~~~~~~~-ad~ielN~scP~~~-------g~~~~~~~~~~~~iv 189 (327)
T cd04738 118 AKRLKKRRPRGGPLGVNIGKNKDTPLEDAVEDYVIGVRKLGPY-ADYLVVNVSSPNTP-------GLRDLQGKEALRELL 189 (327)
T ss_pred HHHHHHhccCCCeEEEEEeCCCCCcccccHHHHHHHHHHHHhh-CCEEEEECCCCCCC-------ccccccCHHHHHHHH
Confidence 21 1224689999999876 68899999988774 89999999999853 222357899999999
Q ss_pred HHHHhcCC-----CcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcc------------cCCCCcCCcCC
Q 020423 187 SVIAANTN-----VPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKAL------------LNGISPAENRT 249 (326)
Q Consensus 187 ~avr~~~~-----~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~------------~~g~~~~~~~~ 249 (326)
+++|+.++ +|+.+|++.++++ +++.+ +++.++++|+|+|+++++... .+|+++ +.
T Consensus 190 ~av~~~~~~~~~~~Pv~vKl~~~~~~----~~~~~-ia~~l~~aGad~I~~~n~~~~~~~~~~~~~~~~~gG~sG---~~ 261 (327)
T cd04738 190 TAVKEERNKLGKKVPLLVKIAPDLSD----EELED-IADVALEHGVDGIIATNTTISRPGLLRSPLANETGGLSG---AP 261 (327)
T ss_pred HHHHHHHhhcccCCCeEEEeCCCCCH----HHHHH-HHHHHHHcCCcEEEEECCcccccccccccccCCCCccCC---hh
Confidence 99999885 9999999986542 23333 556778899999999986431 112222 12
Q ss_pred CCCccHHHHHHHHhcCC-CceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhC-CchhHHhHHH
Q 020423 250 IPPLKYEYYYALLRDFP-DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN-PWYTLGHVDT 312 (326)
Q Consensus 250 ~~~~~~~~i~~i~~~~~-~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~d-P~l~~~~i~~ 312 (326)
..+..++.++++++... ++|||++|||.|++|+.+++..|||+||+||+++.+ |+++ .++.+
T Consensus 262 ~~~~~l~~v~~l~~~~~~~ipIi~~GGI~t~~da~e~l~aGAd~V~vg~~~~~~gP~~~-~~i~~ 325 (327)
T cd04738 262 LKERSTEVLRELYKLTGGKIPIIGVGGISSGEDAYEKIRAGASLVQLYTGLVYEGPGLV-KRIKR 325 (327)
T ss_pred hhHHHHHHHHHHHHHhCCCCcEEEECCCCCHHHHHHHHHcCCCHHhccHHHHhhCcHHH-HHHHh
Confidence 23345777888776643 799999999999999999999999999999999885 9954 44443
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors. |
| >PRK07565 dihydroorotate dehydrogenase 2; Reviewed | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.8e-24 Score=203.87 Aligned_cols=228 Identities=14% Similarity=0.124 Sum_probs=163.3
Q ss_pred cccccCeecCCcEEEccCC-CCChHHHHHHHHHcCCCcEEEecceeeccccc----------------------------
Q 020423 59 AEMVARQYLPPWFSVAPMM-DWTDNHYRTLARLISKHAWLYTEMLAAETIIY---------------------------- 109 (326)
Q Consensus 59 p~~ig~~~l~nrivlAPM~-~~s~~~~r~~~~~~Gg~gli~te~~~~~~~~~---------------------------- 109 (326)
..+++|+++|||++.|.=. +.+...++++.. .|+|.++|..+..++...
T Consensus 4 ~~~~~Gl~l~nPv~~asg~~~~~~~~~~~~~~--~g~Gavv~kti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~gl 81 (334)
T PRK07565 4 STTYLGLTLRNPLVASASPLSESVDNVKRLED--AGAGAVVLKSLFEEQIRHEAAELDRHLTHGTESFAEALDYFPEPAK 81 (334)
T ss_pred eEEECCEecCCCCEecCcCCCCCHHHHHHHHH--CCCeEEEEeeCCHHHhhccccccccccccCCCcchhhhhhhhhhhc
Confidence 4678999999999776432 234455555433 458888887765432200
Q ss_pred cccchhhhhh----c-CCCCCcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHH
Q 020423 110 QQGNLDRFLA----F-SPEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGE 184 (326)
Q Consensus 110 ~~~~~~~~~~----~-~~~~~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~e 184 (326)
.+...+.+++ . ...+.|+++|+.+.+++++.++++.++++|+|+||||++||... .+.+|+. ..+.+.+
T Consensus 82 ~n~g~d~~~~~i~~~~~~~~~pvi~sI~g~~~~e~~~~a~~~~~agad~ielN~scpp~~---~~~~g~~---~~~~~~e 155 (334)
T PRK07565 82 FYVGPEEYLELIRRAKEAVDIPVIASLNGSSAGGWVDYARQIEQAGADALELNIYYLPTD---PDISGAE---VEQRYLD 155 (334)
T ss_pred cCcCHHHHHHHHHHHHHhcCCcEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeCCCCCCC---CCCcccc---HHHHHHH
Confidence 0111122221 1 23357999999999999999999999999999999999997632 2444543 3456889
Q ss_pred HHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCccc------------CCCCcCCcCCCCC
Q 020423 185 AMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALL------------NGISPAENRTIPP 252 (326)
Q Consensus 185 iv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~------------~g~~~~~~~~~~~ 252 (326)
++++|++.+++||++|++.++++ +.+ +++.++++|+|.|+++++.... .|+++ +.+.+
T Consensus 156 il~~v~~~~~iPV~vKl~p~~~~---~~~----~a~~l~~~G~dgI~~~n~~~~~~~d~~~~~~~~~~glsg---~~~~~ 225 (334)
T PRK07565 156 ILRAVKSAVSIPVAVKLSPYFSN---LAN----MAKRLDAAGADGLVLFNRFYQPDIDLETLEVVPGLVLST---PAELR 225 (334)
T ss_pred HHHHHHhccCCcEEEEeCCCchh---HHH----HHHHHHHcCCCeEEEECCcCCCCcChhhcccccCCCCCC---chhhh
Confidence 99999999999999999986432 222 4556778999999999874211 01111 12334
Q ss_pred ccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhC-Cch
Q 020423 253 LKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN-PWY 305 (326)
Q Consensus 253 ~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~d-P~l 305 (326)
..++.++++.+.. ++|||++|||.|++|+.+++..|||+||+||+++.+ |.+
T Consensus 226 ~al~~v~~~~~~~-~ipIig~GGI~s~~Da~e~l~aGA~~V~v~t~~~~~g~~~ 278 (334)
T PRK07565 226 LPLRWIAILSGRV-GADLAATTGVHDAEDVIKMLLAGADVVMIASALLRHGPDY 278 (334)
T ss_pred HHHHHHHHHHhhc-CCCEEEECCCCCHHHHHHHHHcCCCceeeehHHhhhCcHH
Confidence 4466777776654 899999999999999999999999999999999996 885
|
|
| >PRK02506 dihydroorotate dehydrogenase 1A; Reviewed | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.3e-23 Score=193.58 Aligned_cols=235 Identities=16% Similarity=0.132 Sum_probs=168.1
Q ss_pred cccccCeecCCcEEEccCCC-CChHHHHHHHHHcCCCcEEEecceeecccc-------------------ccccchhhhh
Q 020423 59 AEMVARQYLPPWFSVAPMMD-WTDNHYRTLARLISKHAWLYTEMLAAETII-------------------YQQGNLDRFL 118 (326)
Q Consensus 59 p~~ig~~~l~nrivlAPM~~-~s~~~~r~~~~~~Gg~gli~te~~~~~~~~-------------------~~~~~~~~~~ 118 (326)
+.++.|++++||+++|-=.. -+...++.+. . .|+|.+.+..+..++.. ..+...+.++
T Consensus 3 ~~~~~Gl~l~NPv~~AsG~~~~~~e~~~~~~-~-~g~Gavv~ktit~~p~~gn~~pr~~~~~~~~~N~~Gl~n~g~~~~~ 80 (310)
T PRK02506 3 STQIAGFKFDNCLMNAAGVYCMTKEELEEVE-A-SAAGAFVTKSATLEPRPGNPEPRYADTPLGSINSMGLPNLGFDYYL 80 (310)
T ss_pred ceEECCEECCCCCEeCCCCCCCCHHHHHHHH-H-cCCcEEEeCccCCCCCCCCCCCeEEECcchhhccCCCCCcCHHHHH
Confidence 35788999999999987544 3455566543 3 35899988887665321 0111122222
Q ss_pred h----cCC--CCCcEEEEecCCCHHHHHHHHHHHHHCC-CCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHh
Q 020423 119 A----FSP--EQHPIVLQIGGSNLDNLAKATELANAYN-YDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAA 191 (326)
Q Consensus 119 ~----~~~--~~~piivQL~g~~~~~f~~aA~~a~~aG-~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~ 191 (326)
+ ..+ .+.|+++|+.|.++++|.+.|+.++++| +|+||||++||+.. . +..+-.+++.+.+++++|++
T Consensus 81 ~~i~~~~~~~~~~pvI~Si~G~~~~~~~~~a~~~~~~g~ad~iElN~ScPn~~-~-----~~~~g~d~~~~~~i~~~v~~ 154 (310)
T PRK02506 81 DYVLELQKKGPNKPHFLSVVGLSPEETHTILKKIQASDFNGLVELNLSCPNVP-G-----KPQIAYDFETTEQILEEVFT 154 (310)
T ss_pred HHHHHHHhhcCCCCEEEEEEeCcHHHHHHHHHHHhhcCCCCEEEEECCCCCCC-C-----ccccccCHHHHHHHHHHHHH
Confidence 1 222 3589999999999999999999999998 89999999999843 1 22333688999999999999
Q ss_pred cCCCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecC------------Cc------ccCCCCcCCcCCCCCc
Q 020423 192 NTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSR------------KA------LLNGISPAENRTIPPL 253 (326)
Q Consensus 192 ~~~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~------------~~------~~~g~~~~~~~~~~~~ 253 (326)
.+.+|+.+|+++..+. .++.+ ++..+.+.|++.|..-.. .. ..+|+++ +.+.|.
T Consensus 155 ~~~~Pv~vKlsp~~~~----~~~a~-~~~~~~~~g~~~i~~~nt~~~~~~iD~~~~~~~~~~~~~~GGlSG---~~i~p~ 226 (310)
T PRK02506 155 YFTKPLGVKLPPYFDI----VHFDQ-AAAIFNKFPLAFVNCINSIGNGLVIDPEDETVVIKPKNGFGGIGG---DYIKPT 226 (310)
T ss_pred hcCCccEEecCCCCCH----HHHHH-HHHHhCcCceEEEEEeccCCCceEEecCCCCccccCCCCCCcCCc---hhccHH
Confidence 9999999999997532 23333 233344567777654321 11 1123333 455666
Q ss_pred cHHHHHHHHhcCC-CceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHh-CCchhHHh
Q 020423 254 KYEYYYALLRDFP-DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ-NPWYTLGH 309 (326)
Q Consensus 254 ~~~~i~~i~~~~~-~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~-dP~l~~~~ 309 (326)
....++++.+... ++|||++|||.|++|+.+++..|||+||++++++. +|.++.+.
T Consensus 227 al~~v~~~~~~~~~~ipIig~GGI~s~~da~e~i~aGA~~Vqv~ta~~~~gp~~~~~i 284 (310)
T PRK02506 227 ALANVRAFYQRLNPSIQIIGTGGVKTGRDAFEHILCGASMVQVGTALHKEGPAVFERL 284 (310)
T ss_pred HHHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHcCCCHHhhhHHHHHhChHHHHHH
Confidence 6778888877653 79999999999999999999999999999999987 79964443
|
|
| >PLN02495 oxidoreductase, acting on the CH-CH group of donors | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.3e-23 Score=199.07 Aligned_cols=244 Identities=16% Similarity=0.145 Sum_probs=170.6
Q ss_pred cccccCeecCCcEEEccCCCCChHHH-HHHHHHcCCCcEEEecceeecc--------ccc-----------------ccc
Q 020423 59 AEMVARQYLPPWFSVAPMMDWTDNHY-RTLARLISKHAWLYTEMLAAET--------IIY-----------------QQG 112 (326)
Q Consensus 59 p~~ig~~~l~nrivlAPM~~~s~~~~-r~~~~~~Gg~gli~te~~~~~~--------~~~-----------------~~~ 112 (326)
..+++|++||||+++|.=.--...+. +++.. . |+|-+++-.+..++ ... .+.
T Consensus 12 st~~~Gl~l~NP~i~ASgp~t~~~e~~~~~~~-~-g~GAVV~KTi~~~~~~~~n~~pr~~~~~~g~~~~~~~n~iGl~N~ 89 (385)
T PLN02495 12 SVTVNGLKMPNPFVIGSGPPGTNYTVMKRAFD-E-GWGGVIAKTVSLDASKVINVTPRYARLRAGANGSAKGRVIGWQNI 89 (385)
T ss_pred eEEECCEEcCCCcEeCCccCCCCHHHHHHHHh-c-CCeEEEeccccCCccccCCCCCeEEecCcccccccccccccccCc
Confidence 57889999999999986443333344 55443 3 47888776554322 000 000
Q ss_pred ------chhhhhh----cC-C-CCCcEEEEecC-CCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCH
Q 020423 113 ------NLDRFLA----FS-P-EQHPIVLQIGG-SNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDP 179 (326)
Q Consensus 113 ------~~~~~~~----~~-~-~~~piivQL~g-~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~ 179 (326)
..+.+++ ++ + .+.|+|+++++ .++++|.+.+++++++|+|++|||++||+....|. +|..+.+++
T Consensus 90 ~~~s~~g~~~~l~~i~~~k~~~~~~pvIaSi~~~~s~~~~~~~a~~~e~~GaD~iELNiSCPn~~~~r~--~g~~~gq~~ 167 (385)
T PLN02495 90 ELISDRPFETMLAEFKQLKEEYPDRILIASIMEEYNKDAWEEIIERVEETGVDALEINFSCPHGMPERK--MGAAVGQDC 167 (385)
T ss_pred ccccccCHHHHHHHHHHHHhhCCCCcEEEEccCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcCc--cchhhccCH
Confidence 1222222 22 2 25799999977 89999999999999999999999999999654443 477888999
Q ss_pred HHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcc------c-----------CCC
Q 020423 180 KFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKAL------L-----------NGI 242 (326)
Q Consensus 180 ~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~------~-----------~g~ 242 (326)
+.+.+++++|++.+.+||.||++++.++ +.+ +++.++++|+|.|++...... . .+.
T Consensus 168 e~~~~i~~~Vk~~~~iPv~vKLsPn~t~---i~~----ia~aa~~~Gadgi~liNT~~~~~~ID~~t~~p~~~~~~~~~~ 240 (385)
T PLN02495 168 DLLEEVCGWINAKATVPVWAKMTPNITD---ITQ----PARVALKSGCEGVAAINTIMSVMGINLDTLRPEPCVEGYSTP 240 (385)
T ss_pred HHHHHHHHHHHHhhcCceEEEeCCChhh---HHH----HHHHHHHhCCCEEEEecccCcccccccccCccccccCCCCCC
Confidence 9999999999999999999999986543 322 455667899999998643210 0 011
Q ss_pred CcCCcCCCCCccHHHHHHHHhcCC-----CceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhC-CchhHHhHHHhh
Q 020423 243 SPAENRTIPPLKYEYYYALLRDFP-----DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN-PWYTLGHVDTAI 314 (326)
Q Consensus 243 ~~~~~~~~~~~~~~~i~~i~~~~~-----~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~d-P~l~~~~i~~~~ 314 (326)
.+...+.+.|.....++++++... ++|||++|||.+++|+.+++..||+.||++++++.+ |.+ .+++.+.|
T Consensus 241 GGlSG~alkpiAl~~v~~i~~~~~~~~~~~ipIiGvGGI~s~~Da~e~i~aGAs~VQv~Ta~~~~Gp~v-i~~i~~~L 317 (385)
T PLN02495 241 GGYSSKAVRPIALAKVMAIAKMMKSEFPEDRSLSGIGGVETGGDAAEFILLGADTVQVCTGVMMHGYPL-VKNLCAEL 317 (385)
T ss_pred CCccchhhhHHHHHHHHHHHHHHhhhccCCCcEEEECCCCCHHHHHHHHHhCCCceeEeeeeeecCcHH-HHHHHHHH
Confidence 111112233444444555555431 599999999999999999999999999999999998 885 44444443
|
|
| >COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.6e-22 Score=187.03 Aligned_cols=233 Identities=22% Similarity=0.262 Sum_probs=172.6
Q ss_pred ccccCeecCCcEEEccCCCC-ChHHHHHHHHHcCCCcEEEecceeecccccc---------------------ccchhhh
Q 020423 60 EMVARQYLPPWFSVAPMMDW-TDNHYRTLARLISKHAWLYTEMLAAETIIYQ---------------------QGNLDRF 117 (326)
Q Consensus 60 ~~ig~~~l~nrivlAPM~~~-s~~~~r~~~~~~Gg~gli~te~~~~~~~~~~---------------------~~~~~~~ 117 (326)
.++.|+++||++++|.=... ....++.+.. .| +|.+.+..+..++..-+ +...+.+
T Consensus 4 ~~~~Gl~f~NPl~lAaG~~~~~~~~~~~~~~-~g-~G~i~~ktvt~~pq~Gnp~PR~~~l~~~~~~iN~mG~~N~G~~~~ 81 (310)
T COG0167 4 TEILGLKFPNPLGLAAGFDGKNGEELDALAA-LG-FGAIVTKTVTPEPQEGNPKPRLFRLPEDEGLINRMGFNNPGADAF 81 (310)
T ss_pred eeecceecCCCCeEcccCCccCHHHHHHHHh-cC-CceEEecCCCCcCCCCCCCCeEEEecCcccHHHhcCCCchhHHHH
Confidence 34889999999999765553 4444554433 34 88898888876643210 1111122
Q ss_pred hh----cCC----CCCcEEEEecCCCHHHHHHHHHHHHHCC-CCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHH
Q 020423 118 LA----FSP----EQHPIVLQIGGSNLDNLAKATELANAYN-YDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSV 188 (326)
Q Consensus 118 ~~----~~~----~~~piivQL~g~~~~~f~~aA~~a~~aG-~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~a 188 (326)
++ .+. .+.+++.+..+...++|.+.+..+++++ +|++|+|++||+.. + |-++..+++.+.+++++
T Consensus 82 ~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~~ad~ielNiScPnt~-----g-~~~l~~~~e~l~~l~~~ 155 (310)
T COG0167 82 LEELKLAKYEGKPIGVNIGKNKGGPSEEAWADYARLLEEAGDADAIELNISCPNTP-----G-GRALGQDPELLEKLLEA 155 (310)
T ss_pred HHHHHhhhhccCCcCcceEEecCCCcHHHHHHHHHHHHhcCCCCEEEEEccCCCCC-----C-hhhhccCHHHHHHHHHH
Confidence 11 111 3445777888888999999999999998 89999999999853 2 66677799999999999
Q ss_pred HHhcCCCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCc----------------ccCCCCcCCcCCCCC
Q 020423 189 IAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKA----------------LLNGISPAENRTIPP 252 (326)
Q Consensus 189 vr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~----------------~~~g~~~~~~~~~~~ 252 (326)
+++.+.+||.||+.+.+ +++.+ +++.++++|+|.|++...+. ..+|+++ +.+.|
T Consensus 156 vk~~~~~Pv~vKl~P~~------~di~~-iA~~~~~~g~Dgl~~~NT~~~~~~id~~~~~~~~~~~~GGLSG---~~ikp 225 (310)
T COG0167 156 VKAATKVPVFVKLAPNI------TDIDE-IAKAAEEAGADGLIAINTTKSGMKIDLETKKPVLANETGGLSG---PPLKP 225 (310)
T ss_pred HHhcccCceEEEeCCCH------HHHHH-HHHHHHHcCCcEEEEEeeccccccccccccccccCcCCCCcCc---ccchH
Confidence 99999999999999932 23333 56677889999999864211 1234444 45667
Q ss_pred ccHHHHHHHHhcC-CCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhC-CchhHHhH
Q 020423 253 LKYEYYYALLRDF-PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN-PWYTLGHV 310 (326)
Q Consensus 253 ~~~~~i~~i~~~~-~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~d-P~l~~~~i 310 (326)
...+.++++.++. .++|||++|||.|++|+.+.+..||++||++++++.+ |+++.+.+
T Consensus 226 ~al~~v~~l~~~~~~~ipIIGvGGI~s~~DA~E~i~aGA~~vQv~Tal~~~Gp~i~~~I~ 285 (310)
T COG0167 226 IALRVVAELYKRLGGDIPIIGVGGIETGEDALEFILAGASAVQVGTALIYKGPGIVKEII 285 (310)
T ss_pred HHHHHHHHHHHhcCCCCcEEEecCcCcHHHHHHHHHcCCchheeeeeeeeeCchHHHHHH
Confidence 7788899888875 2599999999999999999999999999999999998 99644433
|
|
| >TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2 | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.8e-22 Score=191.10 Aligned_cols=236 Identities=15% Similarity=0.168 Sum_probs=167.5
Q ss_pred cccccCeecCCcEEEccCCCCChHHHHHHHHHcCCCcEEEecceeecccccc---------------------ccchhhh
Q 020423 59 AEMVARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQ---------------------QGNLDRF 117 (326)
Q Consensus 59 p~~ig~~~l~nrivlAPM~~~s~~~~r~~~~~~Gg~gli~te~~~~~~~~~~---------------------~~~~~~~ 117 (326)
+.++.|++++|++++|-=..-+...++.+.. . |+|.+.+..+..++...+ +...+.+
T Consensus 47 ~~~~~Gl~l~NPi~lAsG~~~~~~~~~~~~~-~-G~Gavv~kTvt~~p~~gn~~Pr~~~~~~~~~~iN~~Gl~n~G~~~~ 124 (335)
T TIGR01036 47 EVTVLGLKFPNPLGLAAGFDKDGEAIDALGA-M-GFGFLEIGTVTPKPQPGNPRPRLFRLIEDEALINRMGFNNHGADVL 124 (335)
T ss_pred cEEECCEECCCCcEeCCccCCCHHHHHHHHh-c-CCCEEEeCCcCCCCCCCCCCCCEEECccccccccCCCCCChhHHHH
Confidence 4678899999999996544334445555544 3 589999988776532100 1111222
Q ss_pred hh---cCCCCCcEEEEecCC-------CHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHH
Q 020423 118 LA---FSPEQHPIVLQIGGS-------NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMS 187 (326)
Q Consensus 118 ~~---~~~~~~piivQL~g~-------~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~ 187 (326)
++ -++.+.|+++++.++ ..++|++.++.+.+. +|++|||++||+.. |.....+++.+.++++
T Consensus 125 l~~i~~~~~~~~i~vsi~~~~~~~~~~~~~dy~~~~~~~~~~-ad~iElNlScPn~~-------~~~~~~~~~~~~~i~~ 196 (335)
T TIGR01036 125 VERLKRARYKGPIGINIGKNKDTPSEDAKEDYAACLRKLGPL-ADYLVVNVSSPNTP-------GLRDLQYKAELRDLLT 196 (335)
T ss_pred HHHHhhccCCCcEEEEEeCCCCCCcccCHHHHHHHHHHHhhh-CCEEEEEccCCCCC-------CcccccCHHHHHHHHH
Confidence 21 134467899999765 478999999999874 89999999999853 2223378999999999
Q ss_pred HHHhcCC-------CcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCc------------ccCCCCcCCcC
Q 020423 188 VIAANTN-------VPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKA------------LLNGISPAENR 248 (326)
Q Consensus 188 avr~~~~-------~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~------------~~~g~~~~~~~ 248 (326)
+|++.++ +|+.+|+++..++ +++.+ +++.++++|+|.|++..... ..+|+++ +
T Consensus 197 ~V~~~~~~~~~~~~~Pv~vKLsP~~~~-~~i~~----ia~~~~~~GadGi~l~NT~~~~~~~~~~~~~~~~GGlSG---~ 268 (335)
T TIGR01036 197 AVKQEQDGLRRVHRVPVLVKIAPDLTE-SDLED----IADSLVELGIDGVIATNTTVSRSLVQGPKNSDETGGLSG---K 268 (335)
T ss_pred HHHHHHHhhhhccCCceEEEeCCCCCH-HHHHH----HHHHHHHhCCcEEEEECCCCccccccCccccCCCCcccC---H
Confidence 9998776 9999999997543 12333 45566789999999865431 1233333 2
Q ss_pred CCCCccHHHHHHHHhcCC-CceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHh-CCchhHHhHHHh
Q 020423 249 TIPPLKYEYYYALLRDFP-DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ-NPWYTLGHVDTA 313 (326)
Q Consensus 249 ~~~~~~~~~i~~i~~~~~-~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~-dP~l~~~~i~~~ 313 (326)
.+.+.....++++.+... ++|||++|||.+++|+.+++..|||+||+||+++. +|+ |..++.+.
T Consensus 269 ~i~p~al~~v~~~~~~~~~~ipiig~GGI~~~~da~e~l~aGA~~Vqv~ta~~~~Gp~-~~~~i~~~ 334 (335)
T TIGR01036 269 PLQDKSTEIIRRLYAELQGRLPIIGVGGISSAQDALEKIRAGASLLQIYSGFIYWGPP-LVKEIVKE 334 (335)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcCCcHHHhhHHHHHhCch-HHHHHHhh
Confidence 333444566777766543 69999999999999999999999999999999988 599 56666543
|
The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region. |
| >KOG2334 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.8e-22 Score=185.80 Aligned_cols=231 Identities=22% Similarity=0.309 Sum_probs=179.0
Q ss_pred cccCeecCCcEEEccCCCCChHHHHHHHHHcCCCcEEEecceeeccccccccchh---------------hhhh-cCCCC
Q 020423 61 MVARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLD---------------RFLA-FSPEQ 124 (326)
Q Consensus 61 ~ig~~~l~nrivlAPM~~~s~~~~r~~~~~~Gg~gli~te~~~~~~~~~~~~~~~---------------~~~~-~~~~~ 124 (326)
+++.+...|..++|||+++++.+.|.++-++| ++++|+|-+....++....... ..+. ...+.
T Consensus 3 ~~~~l~y~nk~iLApMvr~G~lpmrLLal~~G-adlv~~peIVdkKLIe~ir~~NealgtIDfv~p~~~~vvfr~~~~e~ 81 (477)
T KOG2334|consen 3 KISSLFYRNKLILAPMVRAGELPMRLLALQYG-ADLVYTPEIVDKKLIECIRVENEALGTIDFVDPSDSTVVFRTCPAEN 81 (477)
T ss_pred chhhhhhcCcEeeehHHHhccchHHHHHHHhc-cceecChhhhhHHHHhccccccccccceeeecCCcceEEEEechhhc
Confidence 56677889999999999999999998888887 8999999887776653322111 1111 23345
Q ss_pred CcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccC
Q 020423 125 HPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIG 204 (326)
Q Consensus 125 ~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g 204 (326)
..+++|+..++++--.++|+.+.. ...|+++|+|||..+ .-.+.+|+.++.+++.+..|+..+.+...+|+++|+|.-
T Consensus 82 ~rlilQ~gT~sa~lA~e~A~lv~n-DvsgidiN~gCpK~f-Si~~gmgaalLt~~dkl~~IL~sLvk~~~vpvtckIR~L 159 (477)
T KOG2334|consen 82 SRLILQIGTASAELALEAAKLVDN-DVSGIDINMGCPKEF-SIHGGMGAALLTDPDKLVAILYSLVKGNKVPVTCKIRLL 159 (477)
T ss_pred CeEEEEecCCcHHHHHHHHHHhhc-ccccccccCCCCCcc-ccccCCCchhhcCHHHHHHHHHHHHhcCcccceeEEEec
Confidence 579999988888877788877766 378999999999865 445678999999999999999999999999999999974
Q ss_pred CCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCC---HHH
Q 020423 205 VDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT---VDE 281 (326)
Q Consensus 205 ~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s---~~d 281 (326)
.+.. +.++. .+.+...|+..|.||+|+.-. +...+..-+++.++......||||+||++.+ ..|
T Consensus 160 ~s~e----dtL~l-v~ri~~tgi~ai~vh~rt~d~--------r~~~~~~~~~i~~i~~~~~~V~vi~ng~~~~~e~y~D 226 (477)
T KOG2334|consen 160 DSKE----DTLKL-VKRICATGIAAITVHCRTRDE--------RNQEPATKDYIREIAQACQMVPVIVNGGSMDIEQYSD 226 (477)
T ss_pred CCcc----cHHHH-HHHHHhcCCceEEEEeecccc--------CCCCCCCHHHHHHHHHHhccceEeeccchhhHHhhhh
Confidence 3332 33443 334567999999999997521 2234455677777776665699999999999 556
Q ss_pred HHHHHH-hCCChhhhhHHHHhCCchhH
Q 020423 282 VNAALR-KGAHHVMVGRAAYQNPWYTL 307 (326)
Q Consensus 282 a~~~l~-~GaD~V~iGRall~dP~l~~ 307 (326)
+++..+ .|+|+||++|++..||.+|.
T Consensus 227 i~~~~~~~~~~~vmiAR~A~~n~SiF~ 253 (477)
T KOG2334|consen 227 IEDFQEKTGADSVMIARAAESNPSIFR 253 (477)
T ss_pred HHHHHHHhccchhhhhHhhhcCCceee
Confidence 666666 89999999999999999864
|
|
| >PF01180 DHO_dh: Dihydroorotate dehydrogenase; InterPro: IPR012135 Dihydroorotate dehydrogenase (DHOD), also known as dihydroorotate oxidase, catalyses the fourth step in de novo pyrimidine biosynthesis, the stereospecific oxidation of (S)-dihydroorotate to orotate, which is the only redox reaction in this pathway | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.5e-21 Score=182.31 Aligned_cols=237 Identities=19% Similarity=0.286 Sum_probs=158.7
Q ss_pred ccccCeecCCcEEEccCCCCChHHHHHHHHHcCCCcEEEecceeeccccc---------------------cccchhhhh
Q 020423 60 EMVARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIY---------------------QQGNLDRFL 118 (326)
Q Consensus 60 ~~ig~~~l~nrivlAPM~~~s~~~~r~~~~~~Gg~gli~te~~~~~~~~~---------------------~~~~~~~~~ 118 (326)
.++.|++++||+++|.=..-+-..++.+. +.| +|.+.+.-+..++... .+...+.++
T Consensus 4 ~~~~Gl~l~nPi~~asG~~~~~~~~~~~~-~~G-~Gavv~ksvt~~~~~gn~~pr~~~~~~~~~~~n~~G~~n~g~~~~~ 81 (295)
T PF01180_consen 4 TNFCGLTLKNPIGLASGLDKNGEEIKRLF-DAG-FGAVVTKSVTPEPREGNPEPRIFRLPEGESILNSMGLPNPGLEYYL 81 (295)
T ss_dssp EEETTEEESSSEEE-TTSSTSSHHHHHHH-HHS-SSEEEEEEE-SSGB--SSSS-EEEETTETEEEE---S-BSHHHHHH
T ss_pred EEECCEEcCCCcEECCcCCCCchhhhhhh-cCC-ccEEEeccccccccccccCCcEEeeccccccccccCCChHHHHHHH
Confidence 57899999999999853222234444443 345 8999888776554310 001111111
Q ss_pred h----c---CC--CCCcEEEEecCCC---HHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHH
Q 020423 119 A----F---SP--EQHPIVLQIGGSN---LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAM 186 (326)
Q Consensus 119 ~----~---~~--~~~piivQL~g~~---~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv 186 (326)
+ . .. ...|+++++.+.. .++|.+.+++++ +|+|++|||++||+.. .+..+.++++...+++
T Consensus 82 ~~~~~~~~~~~~~~~~pvi~Si~~~~~~~~~d~~~~a~~~~-~~ad~lElN~ScPn~~------~~~~~~~~~~~~~~i~ 154 (295)
T PF01180_consen 82 ERLRPILKEAKKDVDIPVIASINGDSEEEIEDWAELAKRLE-AGADALELNLSCPNVP------GGRPFGQDPELVAEIV 154 (295)
T ss_dssp HHHHHTHHHTTCH-CEEEEEEE-TSSSGHHHHHHHHHHHHH-HHCSEEEEESTSTTST------TSGGGGGHHHHHHHHH
T ss_pred HHHHHHhhhcccccceeEEEEeecCCchhHHHHHHHHHHhc-CcCCceEEEeeccCCC------CccccccCHHHHHHHH
Confidence 1 1 11 3568999999998 899999999988 7899999999999853 2444557889999999
Q ss_pred HHHHhcCCCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCC------------cc----cCCCCcCCcCCC
Q 020423 187 SVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRK------------AL----LNGISPAENRTI 250 (326)
Q Consensus 187 ~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~------------~~----~~g~~~~~~~~~ 250 (326)
+.+++..++|+.||+++..++.... . ++..+.+.|+|.|++..+. .. .+|+++ +.+
T Consensus 155 ~~v~~~~~~Pv~vKL~p~~~~~~~~----~-~~~~~~~~g~~gi~~~Nt~~~~~~id~~~~~~~~~~~~gGlSG---~~i 226 (295)
T PF01180_consen 155 RAVREAVDIPVFVKLSPNFTDIEPF----A-IAAELAADGADGIVAINTFGQGDAIDLETRRPVLGNGFGGLSG---PAI 226 (295)
T ss_dssp HHHHHHHSSEEEEEE-STSSCHHHH----H-HHHHHHTHTECEEEE---EEEEE-EETTTTEESSSGGEEEEEE---GGG
T ss_pred HHHHhccCCCEEEEecCCCCchHHH----H-HHHHhhccceeEEEEecCccCcccccchhcceeeccccCCcCc---hhh
Confidence 9999988999999999976553211 1 1222336899999853221 00 122333 234
Q ss_pred CCccHHHHHHHHhcCC-CceEEEeCCCCCHHHHHHHHHhCCChhhhhHHH-HhCCchhHHhHHHhh
Q 020423 251 PPLKYEYYYALLRDFP-DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAA-YQNPWYTLGHVDTAI 314 (326)
Q Consensus 251 ~~~~~~~i~~i~~~~~-~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRal-l~dP~l~~~~i~~~~ 314 (326)
.|....+++++++... ++|||++|||.|++|+.+++..|||+||+++++ +.+|++ .+++.+.|
T Consensus 227 ~p~aL~~V~~~~~~~~~~i~Iig~GGI~s~~da~e~l~aGA~~Vqv~Sal~~~Gp~~-~~~i~~~L 291 (295)
T PF01180_consen 227 RPIALRWVRELRKALGQDIPIIGVGGIHSGEDAIEFLMAGASAVQVCSALIYRGPGV-IRRINREL 291 (295)
T ss_dssp HHHHHHHHHHHHHHTTTSSEEEEESS--SHHHHHHHHHHTESEEEESHHHHHHGTTH-HHHHHHHH
T ss_pred hhHHHHHHHHHHhccccceEEEEeCCcCCHHHHHHHHHhCCCHheechhhhhcCcHH-HHHHHHHH
Confidence 4555677888887763 599999999999999999999999999999999 568985 55554443
|
DHODs can be divided into two mains classes: class 1 cytosolic enzymes found primarily in Gram-positive bacteria, and class 2 membrane-associated enzymes found primarily in eukaryotic mitochondria and Gram-negative bacteria []. The class 1 DHODs can be further divided into subclasses 1A and 1B, which differ in their structural organisation and use of electron acceptors. The 1A enzyme is a homodimer of two PyrD subunits where each subunit forms a TIM barrel fold with a bound FMN cofactor located near the top of the barrel []. Fumarate is the natural electron acceptor for this enzyme. The 1B enzyme, in contrast is a heterotetramer composed of a central, FMN-containing, PyrD homodimer resembling the 1A homodimer, and two additional PyrK subunits which contain FAD and a 2Fe-2S cluster []. These additional groups allow the enzyme to use NAD(+) as its natural electron acceptor. The class 2 membrane-associated enzymes are monomers which have the FMN-containing TIM barrel domain found in the class 1 PyrD subunit, and an additional N-terminal alpha helical domain [, ]. These enzymes use respiratory quinones as the physiological electron acceptor. This entry represents the FMN-binding subunit common to all classes of dihydroorotate dehydrogenase.; GO: 0004152 dihydroorotate dehydrogenase activity, 0006222 UMP biosynthetic process, 0055114 oxidation-reduction process; PDB: 3GYE_A 3GZ3_A 3MHU_B 3MJY_A 3TQ0_A 2B4G_C 1EP3_A 1EP2_A 1EP1_A 3I6R_A .... |
| >cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.3e-20 Score=176.26 Aligned_cols=202 Identities=15% Similarity=0.133 Sum_probs=149.0
Q ss_pred ccccccCeecCCcEEEccCCCCC------hHHHHHHHHHcCCCcEEEecceeeccccccccchhhhhhcCCCCCcEEEEe
Q 020423 58 KAEMVARQYLPPWFSVAPMMDWT------DNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQI 131 (326)
Q Consensus 58 ~p~~ig~~~l~nrivlAPM~~~s------~~~~r~~~~~~Gg~gli~te~~~~~~~~~~~~~~~~~~~~~~~~~piivQL 131 (326)
...++.|..++.|++++||++.+ +..++..+.+.|. .++++++... ..+.+.+. ...|+.+||
T Consensus 54 ~~~~~lg~~~~~Pi~iapm~g~~~~~~~~~~~la~aa~~~g~-~~~~~~~~~~--------~~~~i~~~--~~~~~~~ql 122 (299)
T cd02809 54 TSTTLLGQKLAMPFGIAPTGLQGLAHPDGELATARAAAAAGI-PFTLSTVSTT--------SLEEVAAA--APGPRWFQL 122 (299)
T ss_pred CceEECCeecCCCeeeCcccccccCCchHHHHHHHHHHHcCC-CEEecCCCcC--------CHHHHHHh--cCCCeEEEE
Confidence 35677788999999999997654 5577777888774 5555554421 11222111 237999999
Q ss_pred cCC-CHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCcc
Q 020423 132 GGS-NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDS 210 (326)
Q Consensus 132 ~g~-~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~ 210 (326)
++. +++...+.++++.+.|+|+|++|++||... .+ ...++++++++.++.|+++|... +
T Consensus 123 ~~~~~~~~~~~~i~~~~~~g~~~i~l~~~~p~~~-~~-------------~~~~~i~~l~~~~~~pvivK~v~------s 182 (299)
T cd02809 123 YVPRDREITEDLLRRAEAAGYKALVLTVDTPVLG-RR-------------LTWDDLAWLRSQWKGPLILKGIL------T 182 (299)
T ss_pred eecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCC-CC-------------CCHHHHHHHHHhcCCCEEEeecC------C
Confidence 876 889999999999999999999999999742 11 34477888888889999999542 2
Q ss_pred HHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCC-CceEEEeCCCCCHHHHHHHHHhC
Q 020423 211 YNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFP-DLTFTLNGGINTVDEVNAALRKG 289 (326)
Q Consensus 211 ~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~-~iPVIa~GgI~s~~da~~~l~~G 289 (326)
.++ ++.++++|+|+|+++++.... . ...+..++.+.++++... ++|||++|||++++|+.+++..|
T Consensus 183 ~~~-----a~~a~~~G~d~I~v~~~gG~~----~----~~g~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~kal~lG 249 (299)
T cd02809 183 PED-----ALRAVDAGADGIVVSNHGGRQ----L----DGAPATIDALPEIVAAVGGRIEVLLDGGIRRGTDVLKALALG 249 (299)
T ss_pred HHH-----HHHHHHCCCCEEEEcCCCCCC----C----CCCcCHHHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHcC
Confidence 222 345567999999997643211 0 112345888888876653 69999999999999999999999
Q ss_pred CChhhhhHHHHhCC
Q 020423 290 AHHVMVGRAAYQNP 303 (326)
Q Consensus 290 aD~V~iGRall~dP 303 (326)
||+|++||+++...
T Consensus 250 Ad~V~ig~~~l~~~ 263 (299)
T cd02809 250 ADAVLIGRPFLYGL 263 (299)
T ss_pred CCEEEEcHHHHHHH
Confidence 99999999998654
|
This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. |
| >PLN02826 dihydroorotate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.6e-20 Score=178.76 Aligned_cols=237 Identities=14% Similarity=0.152 Sum_probs=166.5
Q ss_pred cccccCeecCCcEEEccCCCCChHHHHHHHHHcCCCcEEEecceeeccccc---------------------cccchhhh
Q 020423 59 AEMVARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIY---------------------QQGNLDRF 117 (326)
Q Consensus 59 p~~ig~~~l~nrivlAPM~~~s~~~~r~~~~~~Gg~gli~te~~~~~~~~~---------------------~~~~~~~~ 117 (326)
+..+.|++++|++.+|.=..-+...++.+.. .| +|.+.++.+.+.+..- +++..+.+
T Consensus 75 ~~~~~Gl~f~NPvglAAG~dkn~~~~~~l~~-lG-fG~vevgTVT~~pq~GNp~PR~frl~~~~aiiN~~Gfnn~G~~~~ 152 (409)
T PLN02826 75 GVEVWGRTFSNPIGLAAGFDKNAEAVEGLLG-LG-FGFVEIGSVTPLPQPGNPKPRVFRLREEGAIINRYGFNSEGIVAV 152 (409)
T ss_pred ceEECCEECCCCCEECcccCCCHHHHHHHHh-cC-CCeEEeCCccCCCCCCCCCCcEEecCCCceeEecCCCCCcCHHHH
Confidence 5678899999999998765545555555544 34 8999888887643210 01111111
Q ss_pred h----hcCC-----------------------CCCcEEEEecCC-----CHHHHHHHHHHHHHCCCCEEEecCCCCCCcc
Q 020423 118 L----AFSP-----------------------EQHPIVLQIGGS-----NLDNLAKATELANAYNYDEINLNCGCPSPKV 165 (326)
Q Consensus 118 ~----~~~~-----------------------~~~piivQL~g~-----~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~ 165 (326)
. .... ...|+++|+.++ ..++|.+.++.+.++ +|++|||.+||+..
T Consensus 153 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lgvnIg~nk~~~~~~~Dy~~~~~~~~~~-aDylelNiScPNtp- 230 (409)
T PLN02826 153 AKRLGAQHGKRKLDETSSSSFSSDDVKAGGKAGPGILGVNLGKNKTSEDAAADYVQGVRALSQY-ADYLVINVSSPNTP- 230 (409)
T ss_pred HHHHHHHhhhcccccccccccccccccccccccCceEEEEeccCCCCcccHHHHHHHHHHHhhh-CCEEEEECCCCCCC-
Confidence 1 1110 123899999877 579999999999875 89999999999853
Q ss_pred cCCCCccccccCCHHHHHHHHHHHHhc---------CCCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCC
Q 020423 166 AGHGCFGVSLMLDPKFVGEAMSVIAAN---------TNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRK 236 (326)
Q Consensus 166 ~r~d~yGgsl~~r~~~l~eiv~avr~~---------~~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~ 236 (326)
|...+++++.+.+++++|++. ...|+.||+.+..++ +++.+ +++.+++.|+|.|++...+
T Consensus 231 ------glr~lq~~~~l~~ll~~V~~~~~~~~~~~~~~~Pv~vKlaPdl~~-~di~~----ia~~a~~~G~dGIi~~NTt 299 (409)
T PLN02826 231 ------GLRKLQGRKQLKDLLKKVLAARDEMQWGEEGPPPLLVKIAPDLSK-EDLED----IAAVALALGIDGLIISNTT 299 (409)
T ss_pred ------CcccccChHHHHHHHHHHHHHHHHhhhccccCCceEEecCCCCCH-HHHHH----HHHHHHHcCCCEEEEEccc
Confidence 222336788899999988643 468999999986543 12333 4556678999999997532
Q ss_pred c-------------ccCCCCcCCcCCCCCccHHHHHHHHhcCC-CceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhC
Q 020423 237 A-------------LLNGISPAENRTIPPLKYEYYYALLRDFP-DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN 302 (326)
Q Consensus 237 ~-------------~~~g~~~~~~~~~~~~~~~~i~~i~~~~~-~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~d 302 (326)
. ..+|+++ +.+.+...+.++++.+... ++|||++|||.|++|+.+.+..||++||++|+++.+
T Consensus 300 ~~r~~dl~~~~~~~~~GGlSG---~pl~~~sl~~v~~l~~~~~~~ipIIgvGGI~sg~Da~e~i~AGAs~VQv~Ta~~~~ 376 (409)
T PLN02826 300 ISRPDSVLGHPHADEAGGLSG---KPLFDLSTEVLREMYRLTRGKIPLVGCGGVSSGEDAYKKIRAGASLVQLYTAFAYE 376 (409)
T ss_pred CcCccchhcccccccCCCcCC---ccccHHHHHHHHHHHHHhCCCCcEEEECCCCCHHHHHHHHHhCCCeeeecHHHHhc
Confidence 1 1233443 2344455777888877643 799999999999999999999999999999999885
Q ss_pred -CchhHHhHHHhh
Q 020423 303 -PWYTLGHVDTAI 314 (326)
Q Consensus 303 -P~l~~~~i~~~~ 314 (326)
|++ ..++.+.|
T Consensus 377 Gp~~-i~~I~~eL 388 (409)
T PLN02826 377 GPAL-IPRIKAEL 388 (409)
T ss_pred CHHH-HHHHHHHH
Confidence 885 55555544
|
|
| >TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2 | Back alignment and domain information |
|---|
Probab=99.83 E-value=8.2e-19 Score=166.21 Aligned_cols=229 Identities=17% Similarity=0.091 Sum_probs=143.6
Q ss_pred ccccCeecCCcEEEccCCCCC------hHHHHHHHHHcCCCcEEEecceeeccccccccchhhhhhc--CCCCCcEEEEe
Q 020423 60 EMVARQYLPPWFSVAPMMDWT------DNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAF--SPEQHPIVLQI 131 (326)
Q Consensus 60 ~~ig~~~l~nrivlAPM~~~s------~~~~r~~~~~~Gg~gli~te~~~~~~~~~~~~~~~~~~~~--~~~~~piivQL 131 (326)
.++-|.++++|++++||+|.+ +..+...+++.| ..+.....-. ...+.+..+.+..+ ...+.|+++||
T Consensus 45 ~~~~g~~l~~Pi~iaaMtGg~~~~~~in~~La~~a~~~g-~~~~~Gs~~~---~~~~~~~~~~~~~vr~~~~~~p~i~nl 120 (333)
T TIGR02151 45 TEFLGKRLKAPFYINAMTGGSEEAGKINRNLARAARELG-IPMGVGSQRA---ALKDPETADTFEVVREEAPNGPLIANI 120 (333)
T ss_pred eEECCccccCCEEEeCCCCCchhHHHHHHHHHHHHHHcC-CCeEEcCchh---hccChhhHhHHHHHHHhCCCCcEEeec
Confidence 556678899999999999988 566676788777 3333322110 01111112222111 13678999999
Q ss_pred cCCCHHH--HHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCc
Q 020423 132 GGSNLDN--LAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHD 209 (326)
Q Consensus 132 ~g~~~~~--f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~ 209 (326)
++..... ..++.+.+...++|+++||+.|++..... ..+ .+.+...+.++++++.+++||.+|.... . .
T Consensus 121 ~~~~~~~~~~~~~~~~i~~i~adal~i~ln~~q~~~~p-~g~-----~~f~~~le~i~~i~~~~~vPVivK~~g~-g--~ 191 (333)
T TIGR02151 121 GAPQLVEGGPEEAQEAIDMIEADALAIHLNVLQELVQP-EGD-----RNFKGWLEKIAEICSQLSVPVIVKEVGF-G--I 191 (333)
T ss_pred CchhhccccHHHHHHHHHHhcCCCEEEcCcccccccCC-CCC-----cCHHHHHHHHHHHHHhcCCCEEEEecCC-C--C
Confidence 8643211 33344444445679999999888753322 211 2345577999999999999999997532 1 1
Q ss_pred cHHHHHHHHHHHhhhCCccEEEEecCCccc--C--CCCcCCcC-CCCCcc-----HHHHHHHHhcCCCceEEEeCCCCCH
Q 020423 210 SYNQLCDFIYKVSSLSPTRHFIIHSRKALL--N--GISPAENR-TIPPLK-----YEYYYALLRDFPDLTFTLNGGINTV 279 (326)
Q Consensus 210 ~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~--~--g~~~~~~~-~~~~~~-----~~~i~~i~~~~~~iPVIa~GgI~s~ 279 (326)
+. + .++.++++|+|+|+|+++.... . ........ .....+ .+.+.++++...++|||++|||+++
T Consensus 192 ~~-~----~a~~L~~aGvd~I~Vsg~gGt~~~~ie~~r~~~~~~~~~~~~~g~~t~~~l~~~~~~~~~ipVIasGGI~~~ 266 (333)
T TIGR02151 192 SK-E----VAKLLADAGVSAIDVAGAGGTSWAQVENYRAKGSNLASFFNDWGIPTAASLLEVRSDAPDAPIIASGGLRTG 266 (333)
T ss_pred CH-H----HHHHHHHcCCCEEEECCCCCCcccchhhhcccccccchhhhcccHhHHHHHHHHHhcCCCCeEEEECCCCCH
Confidence 22 1 3556778999999999863210 0 00000000 000011 2345555542358999999999999
Q ss_pred HHHHHHHHhCCChhhhhHHHH-----hCCchh
Q 020423 280 DEVNAALRKGAHHVMVGRAAY-----QNPWYT 306 (326)
Q Consensus 280 ~da~~~l~~GaD~V~iGRall-----~dP~l~ 306 (326)
+|+.+++..|||+|++||++| .+|+..
T Consensus 267 ~di~kaLalGAd~V~igr~~L~~~~~~g~~~v 298 (333)
T TIGR02151 267 LDVAKAIALGADAVGMARPFLKAALDEGEEAV 298 (333)
T ss_pred HHHHHHHHhCCCeehhhHHHHHHHHhcCHHHH
Confidence 999999999999999999999 566643
|
Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids. |
| >PRK05437 isopentenyl pyrophosphate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=7.6e-19 Score=167.42 Aligned_cols=220 Identities=16% Similarity=0.095 Sum_probs=140.5
Q ss_pred ccccCeecCCcEEEccCCCCCh------HHHHHHHHHcCCCcEEEecceeeccccccccchhhhhhcC--CCCCcEEEEe
Q 020423 60 EMVARQYLPPWFSVAPMMDWTD------NHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFS--PEQHPIVLQI 131 (326)
Q Consensus 60 ~~ig~~~l~nrivlAPM~~~s~------~~~r~~~~~~Gg~gli~te~~~~~~~~~~~~~~~~~~~~~--~~~~piivQL 131 (326)
.++-|.+++.|++++||++.++ ..+...+++.| ..+....+-. .....+..+.+..+. ..+.|+++||
T Consensus 52 ~~~~g~~l~~Pi~i~~MtGgs~~~~~in~~La~~a~~~G-~~~~~Gs~~~---~~~~~~~~~~~~~vr~~~p~~p~~aNl 127 (352)
T PRK05437 52 TEFLGKKLSAPFLINAMTGGSEKAKEINRKLAEAAEELG-IAMGVGSQRA---ALKDPELADSFSVVRKVAPDGLLFANL 127 (352)
T ss_pred eeECCceecCCEEecccCCCChhHHHHHHHHHHHHHHcC-CCeEecccHh---hccChhhHHHHHHHHHHCCCceEEeec
Confidence 3444668999999999999887 55666677777 4443333210 001111111221111 1367999999
Q ss_pred cCCC-----HHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCC
Q 020423 132 GGSN-----LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVD 206 (326)
Q Consensus 132 ~g~~-----~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~ 206 (326)
+... ++++.++ ++..++|++|||+++++......+. .+.+-+.+.++++++.+++||.+|.....
T Consensus 128 ~~~~~~~~~~~~~~~~---~~~~~adal~l~l~~~qe~~~p~g~------~~f~~~le~i~~i~~~~~vPVivK~~g~g- 197 (352)
T PRK05437 128 GAVQLYGYGVEEAQRA---VEMIEADALQIHLNPLQELVQPEGD------RDFRGWLDNIAEIVSALPVPVIVKEVGFG- 197 (352)
T ss_pred CccccCCCCHHHHHHH---HHhcCCCcEEEeCccchhhcCCCCc------ccHHHHHHHHHHHHHhhCCCEEEEeCCCC-
Confidence 8643 3444444 4445789999999887653222111 34556789999999999999999987421
Q ss_pred CCccHHHHHHHHHHHhhhCCccEEEEecCCcc-------cCCC-----CcCCcCCCCCccHHHHHHHHhcCCCceEEEeC
Q 020423 207 DHDSYNQLCDFIYKVSSLSPTRHFIIHSRKAL-------LNGI-----SPAENRTIPPLKYEYYYALLRDFPDLTFTLNG 274 (326)
Q Consensus 207 ~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~-------~~g~-----~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~G 274 (326)
.+.+ .++.++++|+|+|+|+|+... +.+. .......++ ..+.+.++.+..+++|||++|
T Consensus 198 --~s~~-----~a~~l~~~Gvd~I~Vsg~GGt~~~~ie~~R~~~~~~~~~~~~~g~p--t~~~l~~i~~~~~~ipvia~G 268 (352)
T PRK05437 198 --ISKE-----TAKRLADAGVKAIDVAGAGGTSWAAIENYRARDDRLASYFADWGIP--TAQSLLEARSLLPDLPIIASG 268 (352)
T ss_pred --CcHH-----HHHHHHHcCCCEEEECCCCCCCccchhhhhhhccccccccccccCC--HHHHHHHHHHhcCCCeEEEEC
Confidence 1222 244567899999999875321 0110 000001111 244566666553589999999
Q ss_pred CCCCHHHHHHHHHhCCChhhhhHHHHhC
Q 020423 275 GINTVDEVNAALRKGAHHVMVGRAAYQN 302 (326)
Q Consensus 275 gI~s~~da~~~l~~GaD~V~iGRall~d 302 (326)
||+++.|+.+++..|||+|++||++|..
T Consensus 269 GI~~~~dv~k~l~~GAd~v~ig~~~l~~ 296 (352)
T PRK05437 269 GIRNGLDIAKALALGADAVGMAGPFLKA 296 (352)
T ss_pred CCCCHHHHHHHHHcCCCEEEEhHHHHHH
Confidence 9999999999999999999999999865
|
|
| >cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.3e-18 Score=164.38 Aligned_cols=224 Identities=14% Similarity=0.099 Sum_probs=139.2
Q ss_pred ccccCeecCCcEEEccCCCCC------hHHHHHHHHHcC---CCcEEEecceeeccccccccchhhhhhcCCCCCcEEEE
Q 020423 60 EMVARQYLPPWFSVAPMMDWT------DNHYRTLARLIS---KHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 130 (326)
Q Consensus 60 ~~ig~~~l~nrivlAPM~~~s------~~~~r~~~~~~G---g~gli~te~~~~~~~~~~~~~~~~~~~~~~~~~piivQ 130 (326)
.++-|.++++||++|||++.+ +..+...++..| ++|..-..+..++ .... .+.. +-...+.|+++|
T Consensus 44 ~~~~G~~l~~Pi~ia~mtGg~~~~~~in~~La~~a~~~g~~~~~Gs~~~~~~~~e-~~~~---~~~v-r~~~~~~p~~~N 118 (326)
T cd02811 44 TEFLGKRLSAPLLISAMTGGSEKAKEINRNLAEAAEELGIAMGVGSQRAALEDPE-LAES---FTVV-REAPPNGPLIAN 118 (326)
T ss_pred eEECCceecCCEEEeCCCCCChHHHHHHHHHHHHHHHcCCCeEecCchhhccChh-hhhH---HHHH-HHhCCCceEEee
Confidence 455677899999999999987 566777777777 3332222222211 1111 1111 112245789999
Q ss_pred ecCCCHH--HHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCC
Q 020423 131 IGGSNLD--NLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDH 208 (326)
Q Consensus 131 L~g~~~~--~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~ 208 (326)
++..... ...+..+.+..+++|++|||+++++......+. .+.+.+.+.++.+++.+++||.+|.....
T Consensus 119 l~~~~~~~~~~~~~~~~i~~~~adalel~l~~~q~~~~~~~~------~df~~~~~~i~~l~~~~~vPVivK~~g~g--- 189 (326)
T cd02811 119 LGAVQLNGYGVEEARRAVEMIEADALAIHLNPLQEAVQPEGD------RDFRGWLERIEELVKALSVPVIVKEVGFG--- 189 (326)
T ss_pred cCccccCCCCHHHHHHHHHhcCCCcEEEeCcchHhhcCCCCC------cCHHHHHHHHHHHHHhcCCCEEEEecCCC---
Confidence 9864311 233333444445789999999877643222111 34556778899999999999999975431
Q ss_pred ccHHHHHHHHHHHhhhCCccEEEEecCCcc-------cCCCCcCC---c--CCCCCccHHHHHHHHhcCCCceEEEeCCC
Q 020423 209 DSYNQLCDFIYKVSSLSPTRHFIIHSRKAL-------LNGISPAE---N--RTIPPLKYEYYYALLRDFPDLTFTLNGGI 276 (326)
Q Consensus 209 ~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~-------~~g~~~~~---~--~~~~~~~~~~i~~i~~~~~~iPVIa~GgI 276 (326)
.+.+ .++.++++|+|.|+|+|+... +.+..... . ..........+.++.+...++|||++|||
T Consensus 190 ~s~~-----~a~~l~~~Gvd~I~vsG~GGt~~~~ie~~r~~~~~~~~~~~~~~~g~~t~~~l~~~~~~~~~ipIiasGGI 264 (326)
T cd02811 190 ISRE-----TAKRLADAGVKAIDVAGAGGTSWARVENYRAKDSDQRLAEYFADWGIPTAASLLEVRSALPDLPLIASGGI 264 (326)
T ss_pred CCHH-----HHHHHHHcCCCEEEECCCCCCcccccccccccccccccccccccccccHHHHHHHHHHHcCCCcEEEECCC
Confidence 1222 245567899999999875221 01100000 0 00000113455565554448999999999
Q ss_pred CCHHHHHHHHHhCCChhhhhHHHHhC
Q 020423 277 NTVDEVNAALRKGAHHVMVGRAAYQN 302 (326)
Q Consensus 277 ~s~~da~~~l~~GaD~V~iGRall~d 302 (326)
+++.|+.+++..|||+|++||++|..
T Consensus 265 r~~~dv~kal~lGAd~V~i~~~~L~~ 290 (326)
T cd02811 265 RNGLDIAKALALGADLVGMAGPFLKA 290 (326)
T ss_pred CCHHHHHHHHHhCCCEEEEcHHHHHH
Confidence 99999999999999999999998754
|
Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway. |
| >KOG0134 consensus NADH:flavin oxidoreductase/12-oxophytodienoate reductase [Energy production and conversion; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.6e-19 Score=166.87 Aligned_cols=173 Identities=14% Similarity=0.147 Sum_probs=111.1
Q ss_pred HHHHHHHHHHHHCCCCEEEecCC---------CCCCcccCCCCccccccCCHHHHHHHHHHHHhcCC--CcEEEEeccC-
Q 020423 137 DNLAKATELANAYNYDEINLNCG---------CPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTN--VPVSVKCRIG- 204 (326)
Q Consensus 137 ~~f~~aA~~a~~aG~d~Iein~g---------~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~--~pv~vK~r~g- 204 (326)
+-|..||+.+.++||||||||.. +|. .|.|+|+|||+++||.||+.|++++|+++++ ..+.+....+
T Consensus 174 Drfv~Aak~~~e~GFDGVEIHgAhGYLl~QFlsp~-~NdRtDeYGGSieNR~Rf~lEv~daVr~~Ip~s~~~l~~~~~~~ 252 (400)
T KOG0134|consen 174 DRFVYAAKAAYECGFDGVEIHGAHGYLLDQFLSPT-TNDRTDEYGGSIENRCRFPLEVVDAVRKEIPASRVFLRGSPTNE 252 (400)
T ss_pred HHHHHHHHHHHhcCCCeEEEecccchhhhhhccCC-CCCcccccCcchhhhhhhhHHHHHHHHHhhccccceEEecCchh
Confidence 55777888888999999999965 566 4689999999999999999999999999873 2232322321
Q ss_pred CCC-CccHHHHHHHHHHHhhhCCccEEEEecCCcc-cCCCCcCCcCCC-CCccH-HHHHHHHhcCCCceEE-EeCCCCCH
Q 020423 205 VDD-HDSYNQLCDFIYKVSSLSPTRHFIIHSRKAL-LNGISPAENRTI-PPLKY-EYYYALLRDFPDLTFT-LNGGINTV 279 (326)
Q Consensus 205 ~~~-~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~-~~g~~~~~~~~~-~~~~~-~~i~~i~~~~~~iPVI-a~GgI~s~ 279 (326)
..+ ..+.++... +..+++..|+|.+-++++... +.+......... ....+ +....+.+.+ +.||| +.|+..++
T Consensus 253 fq~~~~t~d~~~~-~~~~y~~~g~df~~l~~g~~~~~~h~i~~R~~~~~~~~~~~~f~e~~r~~~-kgt~v~a~g~~~t~ 330 (400)
T KOG0134|consen 253 FQDIGITIDDAIK-MCGLYEDGGLDFVELTGGTFLAYVHFIEPRQSTIAREAFFVEFAETIRPVF-KGTVVYAGGGGRTR 330 (400)
T ss_pred hhhccccccchHH-HHHHHHhcccchhhccCchhhhhhhhccccccccccccchhhhhhHHHHHh-cCcEEEecCCccCH
Confidence 111 122333322 455677899997777655421 000000000000 01111 2222333333 55554 55689999
Q ss_pred HHHHHHHHhC-CChhhhhHHHHhCCchhHHhHHH
Q 020423 280 DEVNAALRKG-AHHVMVGRAAYQNPWYTLGHVDT 312 (326)
Q Consensus 280 ~da~~~l~~G-aD~V~iGRall~dP~l~~~~i~~ 312 (326)
+.+.++++.| .|+|..||.+++||+|..+....
T Consensus 331 ~~~~eav~~~~T~~ig~GR~f~anPDLp~rl~~~ 364 (400)
T KOG0134|consen 331 EAMVEAVKSGRTDLIGYGRPFLANPDLPKRLLNG 364 (400)
T ss_pred HHHHHHHhcCCceeEEecchhccCCchhHHHHhC
Confidence 9999999977 88999999999999975444443
|
|
| >TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.3e-18 Score=163.89 Aligned_cols=182 Identities=17% Similarity=0.216 Sum_probs=140.1
Q ss_pred ccccCeecCCcEEEccCCCCChHHHHHHHHHcCCCcEEEecceeeccccccccchhhhhhcCCCCCcEEEEecC--CCHH
Q 020423 60 EMVARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGG--SNLD 137 (326)
Q Consensus 60 ~~ig~~~l~nrivlAPM~~~s~~~~r~~~~~~Gg~gli~te~~~~~~~~~~~~~~~~~~~~~~~~~piivQL~g--~~~~ 137 (326)
.+|+++++++++++|||.++|+..||..+++.||.|+ ++.+++.+..+.. .++.+||++ .+++
T Consensus 36 ~~i~~~~l~~PivlAPMagVtd~~fr~~~~~~Galgv-----vsaegl~~~~~~~----------~~~~~QI~g~~~~~~ 100 (369)
T TIGR01304 36 WQIDAYRFELPFIAHPMDALVSPEFAIELGELGGLGV-----LNLEGLWGRHEDP----------DPAIAKIAEAYEEGD 100 (369)
T ss_pred eEEcceecCCceeecCCCcccCHHHHHHHHHcCCccc-----ccchHHHhcCCCH----------HHHHHHHhhcCCChH
Confidence 6789999999999999999999999999999998887 5555554433322 345589998 5666
Q ss_pred HHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHHH
Q 020423 138 NLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDF 217 (326)
Q Consensus 138 ~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ 217 (326)
. +++++.+++.+++. .+++++.++++++|++. +++|+|.+.. ...+
T Consensus 101 ~-a~aa~~~~e~~~~~-----------------------~~p~l~~~ii~~vr~a~---VtvkiRl~~~---~~~e---- 146 (369)
T TIGR01304 101 Q-AAATRLLQELHAAP-----------------------LKPELLGERIAEVRDSG---VITAVRVSPQ---NARE---- 146 (369)
T ss_pred H-HHHHHHHHHcCCCc-----------------------cChHHHHHHHHHHHhcc---eEEEEecCCc---CHHH----
Confidence 6 89999999987554 25899999999999863 8899999532 2333
Q ss_pred HHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhH
Q 020423 218 IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGR 297 (326)
Q Consensus 218 ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGR 297 (326)
+++.++++|+|.|.+|+++......++ ...|..+.+++++. ++|||+ |++.|.+++.++++.|||+|++|+
T Consensus 147 ~a~~l~eAGad~I~ihgrt~~q~~~sg-------~~~p~~l~~~i~~~-~IPVI~-G~V~t~e~A~~~~~aGaDgV~~G~ 217 (369)
T TIGR01304 147 IAPIVVKAGADLLVIQGTLVSAEHVST-------SGEPLNLKEFIGEL-DVPVIA-GGVNDYTTALHLMRTGAAGVIVGP 217 (369)
T ss_pred HHHHHHHCCCCEEEEeccchhhhccCC-------CCCHHHHHHHHHHC-CCCEEE-eCCCCHHHHHHHHHcCCCEEEECC
Confidence 344567899999999998742211111 12366777777775 899997 999999999999999999999887
Q ss_pred HH
Q 020423 298 AA 299 (326)
Q Consensus 298 al 299 (326)
+.
T Consensus 218 gg 219 (369)
T TIGR01304 218 GG 219 (369)
T ss_pred CC
Confidence 54
|
This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302. |
| >TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II | Back alignment and domain information |
|---|
Probab=99.74 E-value=7.7e-17 Score=151.04 Aligned_cols=202 Identities=11% Similarity=0.020 Sum_probs=141.0
Q ss_pred eecCCcEEEccCCCCChHHHHHHHHHcCCCcEEEecceeeccccccccchhhhhhcCCCCCcEEEEecCCCHHHHHHHHH
Q 020423 65 QYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSNLDNLAKATE 144 (326)
Q Consensus 65 ~~l~nrivlAPM~~~s~~~~r~~~~~~Gg~gli~te~~~~~~~~~~~~~~~~~~~~~~~~~piivQL~g~~~~~f~~aA~ 144 (326)
+.++.+|++|||.++|++++...+.+.||.|.+-.....++.+.......+. .+++|+.++++...+. +.+..+
T Consensus 8 lgi~~Pii~apM~~~s~~~la~avs~aGglG~l~~~~~~~~~l~~~i~~~~~-----~t~~pfgvn~~~~~~~-~~~~~~ 81 (307)
T TIGR03151 8 LGIEYPIFQGGMAWVATGSLAAAVSNAGGLGIIGAGNAPPDVVRKEIRKVKE-----LTDKPFGVNIMLLSPF-VDELVD 81 (307)
T ss_pred hCCCCCEEcCCCCCCCCHHHHHHHHhCCCcceeccccCCHHHHHHHHHHHHH-----hcCCCcEEeeecCCCC-HHHHHH
Confidence 3577899999999999999999999999999887766544333222222222 1468999998765433 445556
Q ss_pred HHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHHHHhhh
Q 020423 145 LANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSL 224 (326)
Q Consensus 145 ~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~ 224 (326)
.+.+.|.+.|.++++.|. ++++.+++. +..+...+. +.++ ++.+++
T Consensus 82 ~~~~~~v~~v~~~~g~p~---------------------~~i~~lk~~-g~~v~~~v~-------s~~~-----a~~a~~ 127 (307)
T TIGR03151 82 LVIEEKVPVVTTGAGNPG---------------------KYIPRLKEN-GVKVIPVVA-------SVAL-----AKRMEK 127 (307)
T ss_pred HHHhCCCCEEEEcCCCcH---------------------HHHHHHHHc-CCEEEEEcC-------CHHH-----HHHHHH
Confidence 677889999988654331 355666554 666654321 2222 334567
Q ss_pred CCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhCCc
Q 020423 225 SPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW 304 (326)
Q Consensus 225 ~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~dP~ 304 (326)
+|+|.|++|+++. +|+.+ ....+.++.++.+.. ++|||++|||.+++++.+++..|||+|++|+.++..++
T Consensus 128 ~GaD~Ivv~g~ea--gGh~g------~~~~~~ll~~v~~~~-~iPviaaGGI~~~~~~~~al~~GA~gV~iGt~f~~t~E 198 (307)
T TIGR03151 128 AGADAVIAEGMES--GGHIG------ELTTMALVPQVVDAV-SIPVIAAGGIADGRGMAAAFALGAEAVQMGTRFLCAKE 198 (307)
T ss_pred cCCCEEEEECccc--CCCCC------CCcHHHHHHHHHHHh-CCCEEEECCCCCHHHHHHHHHcCCCEeecchHHhcccc
Confidence 9999999999854 34322 112488888887764 89999999999999999999999999999999998765
Q ss_pred h-hHHhHHHhhh
Q 020423 305 Y-TLGHVDTAIY 315 (326)
Q Consensus 305 l-~~~~i~~~~~ 315 (326)
- .....++.+.
T Consensus 199 s~~~~~~k~~l~ 210 (307)
T TIGR03151 199 CNVHPNYKEKVL 210 (307)
T ss_pred cCCCHHHHHHHH
Confidence 3 2233444443
|
This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase. |
| >PRK08649 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.66 E-value=7.4e-16 Score=147.10 Aligned_cols=211 Identities=17% Similarity=0.159 Sum_probs=143.2
Q ss_pred cchhccccceeeccccccccccccccccccccccccCCCCCCCCccccccccCCccccccCeecCCcEEEccCCCCChHH
Q 020423 4 GMVKFAGSSLISSFTPFDSVLLKKHRRFSVNSFFKNSNNPRSLSTCTQNIILHTKAEMVARQYLPPWFSVAPMMDWTDNH 83 (326)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~ig~~~l~nrivlAPM~~~s~~~ 83 (326)
|++|.+-..+ -|+.|++.|+ +|..+.- + ..+. .+++++.++.|++++||.++++..
T Consensus 7 ~~~~~~~~~~-----~fddV~lvp~-~~~~~~~---------------d-vdls--~~~~~~~i~~Piv~a~M~gVt~~~ 62 (368)
T PRK08649 7 GRGKTARRAY-----GLDEIAIVPS-RRTRDPE---------------D-VSTS--WQIDAYRFEIPIIASPMDAVVSPE 62 (368)
T ss_pred cCCccccccC-----CcceEEEeCC-CCCCCHH---------------H-ceee--eeecceeccCcEeccCCcccCCHH
Confidence 6667665533 2788888877 5533221 1 0111 566899999999999999999999
Q ss_pred HHHHHHHcCCCcEEEecceeeccccccccchhhhhhcCCCCCcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCC
Q 020423 84 YRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSP 163 (326)
Q Consensus 84 ~r~~~~~~Gg~gli~te~~~~~~~~~~~~~~~~~~~~~~~~~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~ 163 (326)
++..+++.||.|++..+.+. .. +.+..++..||.+.++ .++++.+++.+++ |
T Consensus 63 la~avs~~GglGvl~~~gl~-----~~----------~~~~e~l~~qi~~~~~---~~~~~~~~~~~~~--------P-- 114 (368)
T PRK08649 63 TAIELGKLGGLGVLNLEGLW-----TR----------YEDPEPILDEIASLGK---DEATRLMQELYAE--------P-- 114 (368)
T ss_pred HHHHHHhCCCceEEeecccc-----cc----------CCCHHHHHHHHHhcCc---HHHHHHHHHhhcC--------C--
Confidence 99999999999998855543 00 1112334455555444 4455666665422 2
Q ss_pred cccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCC
Q 020423 164 KVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGIS 243 (326)
Q Consensus 164 ~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~ 243 (326)
.+++++.+++++++++ + +.+|++.+.. +..+. ++.+.++|+|+|++|+|+.... +.
T Consensus 115 -------------~~p~l~~~iv~~~~~~-~--V~v~vr~~~~---~~~e~----a~~l~eaGvd~I~vhgrt~~~~-h~ 170 (368)
T PRK08649 115 -------------IKPELITERIAEIRDA-G--VIVAVSLSPQ---RAQEL----APTVVEAGVDLFVIQGTVVSAE-HV 170 (368)
T ss_pred -------------CCHHHHHHHHHHHHhC-e--EEEEEecCCc---CHHHH----HHHHHHCCCCEEEEeccchhhh-cc
Confidence 3489999999999985 4 5556666321 22333 3455689999999999864211 10
Q ss_pred cCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHH
Q 020423 244 PAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRA 298 (326)
Q Consensus 244 ~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRa 298 (326)
. ...+|..+.+.+++. ++|||+ |+|.|.+++.++++.|||+|++|++
T Consensus 171 ~------~~~~~~~i~~~ik~~-~ipVIa-G~V~t~e~A~~l~~aGAD~V~VG~G 217 (368)
T PRK08649 171 S------KEGEPLNLKEFIYEL-DVPVIV-GGCVTYTTALHLMRTGAAGVLVGIG 217 (368)
T ss_pred C------CcCCHHHHHHHHHHC-CCCEEE-eCCCCHHHHHHHHHcCCCEEEECCC
Confidence 0 011366677777775 899999 8999999999999999999999976
|
|
| >cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites | Back alignment and domain information |
|---|
Probab=99.64 E-value=5.2e-15 Score=133.59 Aligned_cols=202 Identities=14% Similarity=0.130 Sum_probs=137.9
Q ss_pred CCcEEEccCCCCChHHHHHHHHHcCCCcEEEecceeeccccccccchhhhhhcCCCCCcEEEEecCCCH-HHHHHHHHHH
Q 020423 68 PPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSNL-DNLAKATELA 146 (326)
Q Consensus 68 ~nrivlAPM~~~s~~~~r~~~~~~Gg~gli~te~~~~~~~~~~~~~~~~~~~~~~~~~piivQL~g~~~-~~f~~aA~~a 146 (326)
++++++|||++.++..++..+.+.|++|++-+++++.+......+.++.. .+.|+.+|++.++. +.+.+.++.+
T Consensus 2 ~~pi~~a~m~g~~~~~~~~~~~~~G~ig~i~~~~~~~~~~~~~~~~i~~~-----~~~~~~v~~i~~~~~~~~~~~~~~~ 76 (236)
T cd04730 2 RYPIIQAPMAGVSTPELAAAVSNAGGLGFIGAGYLTPEALRAEIRKIRAL-----TDKPFGVNLLVPSSNPDFEALLEVA 76 (236)
T ss_pred CCCEECCCCCCCCCHHHHHHHHhCCCccccCCCCCCHHHHHHHHHHHHHh-----cCCCeEEeEecCCCCcCHHHHHHHH
Confidence 58999999999999999999888898899877777655443322222211 14578899988764 4566777888
Q ss_pred HHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHHHHhhhCC
Q 020423 147 NAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSP 226 (326)
Q Consensus 147 ~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~G 226 (326)
.++|+|+|.++.+.+ . ++++.+++ .+.++.+++. +.++. . .+.+.|
T Consensus 77 ~~~g~d~v~l~~~~~-----------------~----~~~~~~~~-~~i~~i~~v~-------~~~~~----~-~~~~~g 122 (236)
T cd04730 77 LEEGVPVVSFSFGPP-----------------A----EVVERLKA-AGIKVIPTVT-------SVEEA----R-KAEAAG 122 (236)
T ss_pred HhCCCCEEEEcCCCC-----------------H----HHHHHHHH-cCCEEEEeCC-------CHHHH----H-HHHHcC
Confidence 999999999975411 1 23334333 3567766532 12221 2 234589
Q ss_pred ccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhCCchh
Q 020423 227 TRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYT 306 (326)
Q Consensus 227 vd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~dP~l~ 306 (326)
+|+|.+++... +|.... .....++.+.++++.. ++||++.|||.+++++.++++.|||+|++|++++..++.-
T Consensus 123 ad~i~~~~~~~--~G~~~~----~~~~~~~~i~~i~~~~-~~Pvi~~GGI~~~~~v~~~l~~GadgV~vgS~l~~~~e~~ 195 (236)
T cd04730 123 ADALVAQGAEA--GGHRGT----FDIGTFALVPEVRDAV-DIPVIAAGGIADGRGIAAALALGADGVQMGTRFLATEESG 195 (236)
T ss_pred CCEEEEeCcCC--CCCCCc----cccCHHHHHHHHHHHh-CCCEEEECCCCCHHHHHHHHHcCCcEEEEchhhhcCcccC
Confidence 99999987532 232211 0112467787776654 8999999999999999999999999999999999877641
Q ss_pred -HHhHHHhhh
Q 020423 307 -LGHVDTAIY 315 (326)
Q Consensus 307 -~~~i~~~~~ 315 (326)
...++..+.
T Consensus 196 ~~~~~~~~~~ 205 (236)
T cd04730 196 ASPAYKQALL 205 (236)
T ss_pred CCHHHHHHHH
Confidence 234444443
|
NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. |
| >PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1 | Back alignment and domain information |
|---|
Probab=99.63 E-value=6.8e-15 Score=139.47 Aligned_cols=195 Identities=15% Similarity=0.155 Sum_probs=119.2
Q ss_pred eecCCcEEEccCCCCChHHHHHHHHHcCCCcEEEecceeeccccccccchhhhhhcCCCCCcEEEEecCCCH--HH----
Q 020423 65 QYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSNL--DN---- 138 (326)
Q Consensus 65 ~~l~nrivlAPM~~~s~~~~r~~~~~~Gg~gli~te~~~~~~~~~~~~~~~~~~~~~~~~~piivQL~g~~~--~~---- 138 (326)
+.++.+|++|||.+++.+.+...+.+.||.|.+-......+.+....++++.+ .++|+.++++.... ..
T Consensus 8 lgi~~PIiqapM~~is~~~LaaAVs~aGglG~l~~~~~~~~~l~~~i~~~~~~-----t~~pfgvnl~~~~~~~~~~~~~ 82 (330)
T PF03060_consen 8 LGIKYPIIQAPMGGISTPELAAAVSNAGGLGFLGAGGLTPEQLREEIRKIRAL-----TDKPFGVNLFLPPPDPADEEDA 82 (330)
T ss_dssp HT-SSSEEE---TTTSSHHHHHHHHHTTSBEEEECTTSSHHHHHHHHHHHHHH------SS-EEEEEETTSTTHHHH-HH
T ss_pred hCCCcCEEcCCCCCCChHHHHHHHHhCCCEeeccccccChHHHHHHHHHHHhh-----ccccccccccccCcccchhhhh
Confidence 45788999999999999999999999999999987776655544333333443 45599999985421 11
Q ss_pred -------------------HHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEE
Q 020423 139 -------------------LAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSV 199 (326)
Q Consensus 139 -------------------f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~v 199 (326)
|.+....+.+.+.+.|...+|.|.. ++++.+++ .++.+..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~G~p~~--------------------~~i~~l~~-~gi~v~~ 141 (330)
T PF03060_consen 83 WPKELGNAVLELCIEEGVPFEEQLDVALEAKPDVVSFGFGLPPP--------------------EVIERLHA-AGIKVIP 141 (330)
T ss_dssp HHHHTHHHHHHHHHHTT-SHHHHHHHHHHS--SEEEEESSSC-H--------------------HHHHHHHH-TT-EEEE
T ss_pred hhhhhHHHHHHHHHHhCcccccccccccccceEEEEeecccchH--------------------HHHHHHHH-cCCcccc
Confidence 1122223333455588887776631 23444433 3666665
Q ss_pred EeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCH
Q 020423 200 KCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTV 279 (326)
Q Consensus 200 K~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~ 279 (326)
.+. +.++ ++.+.+.|+|.|+++|.+. +|+.+. ... ..+.++.++.+. .++|||+.|||.+.
T Consensus 142 ~v~-------s~~~-----A~~a~~~G~D~iv~qG~eA--GGH~g~---~~~-~~~~L~~~v~~~-~~iPViaAGGI~dg 202 (330)
T PF03060_consen 142 QVT-------SVRE-----ARKAAKAGADAIVAQGPEA--GGHRGF---EVG-STFSLLPQVRDA-VDIPVIAAGGIADG 202 (330)
T ss_dssp EES-------SHHH-----HHHHHHTT-SEEEEE-TTS--SEE------SSG--HHHHHHHHHHH--SS-EEEESS--SH
T ss_pred ccC-------CHHH-----HHHhhhcCCCEEEEecccc--CCCCCc---ccc-ceeeHHHHHhhh-cCCcEEEecCcCCH
Confidence 432 2332 2344679999999998765 344331 111 236667777665 48999999999999
Q ss_pred HHHHHHHHhCCChhhhhHHHHhCCc
Q 020423 280 DEVNAALRKGAHHVMVGRAAYQNPW 304 (326)
Q Consensus 280 ~da~~~l~~GaD~V~iGRall~dP~ 304 (326)
+++..++..|||+|++|+.++..++
T Consensus 203 ~~iaaal~lGA~gV~~GTrFl~t~E 227 (330)
T PF03060_consen 203 RGIAAALALGADGVQMGTRFLATEE 227 (330)
T ss_dssp HHHHHHHHCT-SEEEESHHHHTSTT
T ss_pred HHHHHHHHcCCCEeecCCeEEeccc
Confidence 9999999999999999999998755
|
13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A. |
| >cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.6e-14 Score=136.44 Aligned_cols=202 Identities=15% Similarity=0.071 Sum_probs=130.5
Q ss_pred CeecCCcEEEccCCCCChHHHHHHHHHcCCCcEEEecceeeccccccccchhhhhhcCCCCCcEEEEecCCCHHHHHHHH
Q 020423 64 RQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSNLDNLAKAT 143 (326)
Q Consensus 64 ~~~l~nrivlAPM~~~s~~~~r~~~~~~Gg~gli~te~~~~~~~~~~~~~~~~~~~~~~~~~piivQL~g~~~~~f~~aA 143 (326)
.+.++.|+++|||.++|+..++....+.||.|++..++.. +.. .+...+++ +...+.+..+..++ +.+.+
T Consensus 30 ~~~l~~Piv~apM~~vt~~~ma~ava~~GglGvi~~~~~~-~~~------~~~i~~vk--~~l~v~~~~~~~~~-~~~~~ 99 (325)
T cd00381 30 NITLNIPLVSAPMDTVTESEMAIAMARLGGIGVIHRNMSI-EEQ------AEEVRKVK--GRLLVGAAVGTRED-DKERA 99 (325)
T ss_pred ccccCCCEEecCCCcCCcHHHHHHHHHCCCEEEEeCCCCH-HHH------HHHHHHhc--cCceEEEecCCChh-HHHHH
Confidence 4789999999999999999999988889999998776532 211 11111121 23333344454444 45566
Q ss_pred HHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCC-CcEEEEeccCCCCCccHHHHHHHHHHHh
Q 020423 144 ELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTN-VPVSVKCRIGVDDHDSYNQLCDFIYKVS 222 (326)
Q Consensus 144 ~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~-~pv~vK~r~g~~~~~~~~e~~~~ia~~l 222 (326)
+.+.++|+|.|+++++. | +++.+.++++.+++..+ .|+.+ + +..+.++ ++.+
T Consensus 100 ~~l~eagv~~I~vd~~~-----------G-----~~~~~~~~i~~ik~~~p~v~Vi~----G--~v~t~~~-----A~~l 152 (325)
T cd00381 100 EALVEAGVDVIVIDSAH-----------G-----HSVYVIEMIKFIKKKYPNVDVIA----G--NVVTAEA-----ARDL 152 (325)
T ss_pred HHHHhcCCCEEEEECCC-----------C-----CcHHHHHHHHHHHHHCCCceEEE----C--CCCCHHH-----HHHH
Confidence 67777999999998632 2 12456788888888653 45544 2 1123332 2344
Q ss_pred hhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcC--CCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHH
Q 020423 223 SLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF--PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAY 300 (326)
Q Consensus 223 e~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~--~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall 300 (326)
.++|+|+|.|+.+..... ... .........+..+.++.+.. .++|||++|||.++.++.++++.|||+||+||.++
T Consensus 153 ~~aGaD~I~vg~g~G~~~-~t~-~~~g~g~p~~~~i~~v~~~~~~~~vpVIA~GGI~~~~di~kAla~GA~~VmiGt~fa 230 (325)
T cd00381 153 IDAGADGVKVGIGPGSIC-TTR-IVTGVGVPQATAVADVAAAARDYGVPVIADGGIRTSGDIVKALAAGADAVMLGSLLA 230 (325)
T ss_pred HhcCCCEEEECCCCCcCc-ccc-eeCCCCCCHHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHcCCCEEEecchhc
Confidence 579999999964321100 000 00011122355555544322 26999999999999999999999999999999999
Q ss_pred hCCc
Q 020423 301 QNPW 304 (326)
Q Consensus 301 ~dP~ 304 (326)
...+
T Consensus 231 ~t~E 234 (325)
T cd00381 231 GTDE 234 (325)
T ss_pred cccc
Confidence 8654
|
IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents. |
| >cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.6e-13 Score=118.78 Aligned_cols=195 Identities=13% Similarity=0.062 Sum_probs=131.3
Q ss_pred EEEccCCCCC-hHHHHHH-HHHcCCCcEEEecceeeccccccccchhhhh-hcCCCCCcEEEEecCCCHHHHH-HHHHHH
Q 020423 71 FSVAPMMDWT-DNHYRTL-ARLISKHAWLYTEMLAAETIIYQQGNLDRFL-AFSPEQHPIVLQIGGSNLDNLA-KATELA 146 (326)
Q Consensus 71 ivlAPM~~~s-~~~~r~~-~~~~Gg~gli~te~~~~~~~~~~~~~~~~~~-~~~~~~~piivQL~g~~~~~f~-~aA~~a 146 (326)
+.+++|.+-. +.....+ ....||++++.++..............+... ..+..+.|+++|+...++.++. .+++++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 80 (200)
T cd04722 1 VILALLAGGPSGDPVELAKAAAEAGADAIIVGTRSSDPEEAETDDKEVLKEVAAETDLPLGVQLAINDAAAAVDIAAAAA 80 (200)
T ss_pred CeeeccccCchHHHHHHHHHHHcCCCCEEEEeeEEECcccCCCccccHHHHHHhhcCCcEEEEEccCCchhhhhHHHHHH
Confidence 3578888764 3333333 2345778999888776554432221100011 1234578999999887765543 347889
Q ss_pred HHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC-CCcEEEEeccCCCCCccHHHHHHHHHHHhhhC
Q 020423 147 NAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLS 225 (326)
Q Consensus 147 ~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~-~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~ 225 (326)
+++|+|+|++|.+++.. +++..++++++++.+ +.++.+|++...+... . .+++.
T Consensus 81 ~~~g~d~v~l~~~~~~~---------------~~~~~~~~~~i~~~~~~~~v~~~~~~~~~~~~---------~-~~~~~ 135 (200)
T cd04722 81 RAAGADGVEIHGAVGYL---------------AREDLELIRELREAVPDVKVVVKLSPTGELAA---------A-AAEEA 135 (200)
T ss_pred HHcCCCEEEEeccCCcH---------------HHHHHHHHHHHHHhcCCceEEEEECCCCccch---------h-hHHHc
Confidence 99999999999887642 788899999999887 8999999887533211 0 03568
Q ss_pred CccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhH
Q 020423 226 PTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGR 297 (326)
Q Consensus 226 Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGR 297 (326)
|+|++.++++.....+... .+.....+..+. ..+++||+++|||.+++++.++++.|||+|++||
T Consensus 136 g~d~i~~~~~~~~~~~~~~------~~~~~~~~~~~~-~~~~~pi~~~GGi~~~~~~~~~~~~Gad~v~vgs 200 (200)
T cd04722 136 GVDEVGLGNGGGGGGGRDA------VPIADLLLILAK-RGSKVPVIAGGGINDPEDAAEALALGADGVIVGS 200 (200)
T ss_pred CCCEEEEcCCcCCCCCccC------chhHHHHHHHHH-hcCCCCEEEECCCCCHHHHHHHHHhCCCEEEecC
Confidence 9999999877542111100 011122333333 3458999999999999999999999999999986
|
Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN. |
| >PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=5.2e-15 Score=134.34 Aligned_cols=163 Identities=20% Similarity=0.200 Sum_probs=117.1
Q ss_pred HHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHH
Q 020423 140 AKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIY 219 (326)
Q Consensus 140 ~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia 219 (326)
.++|+.++++|+|.|.+|.+||++. +..+ |...++.|+.+. ++++.+++||+.|+|.|. +. + +
T Consensus 27 ~~~a~iae~~g~~~v~~~~~~psd~--~~~g-g~~Rm~~p~~I~----aIk~~V~iPVigk~Righ-----~~---E--a 89 (293)
T PRK04180 27 AEQAKIAEEAGAVAVMALERVPADI--RAAG-GVARMADPKMIE----EIMDAVSIPVMAKARIGH-----FV---E--A 89 (293)
T ss_pred HHHHHHHHHhChHHHHHccCCCchH--hhcC-CeeecCCHHHHH----HHHHhCCCCeEEeehhhH-----HH---H--H
Confidence 4689999999999999999999974 3333 889999998877 566677999999999873 11 1 2
Q ss_pred HHhhhCCccEEEEecCCc--------------------------------------------------------------
Q 020423 220 KVSSLSPTRHFIIHSRKA-------------------------------------------------------------- 237 (326)
Q Consensus 220 ~~le~~Gvd~I~v~~~~~-------------------------------------------------------------- 237 (326)
+.+++.|+|+|+-+.+..
T Consensus 90 ~~L~~~GvDiID~Te~lrpad~~~~~~K~~f~~~fmad~~~l~EAlrai~~GadmI~Ttge~gtg~v~~av~h~r~~~~~ 169 (293)
T PRK04180 90 QILEALGVDYIDESEVLTPADEEYHIDKWDFTVPFVCGARNLGEALRRIAEGAAMIRTKGEAGTGNVVEAVRHMRQINGE 169 (293)
T ss_pred HHHHHcCCCEEeccCCCCchHHHHHHHHHHcCCCEEccCCCHHHHHHHHHCCCCeeeccCCCCCccHHHHHHHHHHHHHH
Confidence 334455555554332210
Q ss_pred --ccCCCCcCCcC---CCCCccHHHHHHHHhcCCCceEE--EeCCCCCHHHHHHHHHhCCChhhhhHHHH--hCCchhHH
Q 020423 238 --LLNGISPAENR---TIPPLKYEYYYALLRDFPDLTFT--LNGGINTVDEVNAALRKGAHHVMVGRAAY--QNPWYTLG 308 (326)
Q Consensus 238 --~~~g~~~~~~~---~~~~~~~~~i~~i~~~~~~iPVI--a~GgI~s~~da~~~l~~GaD~V~iGRall--~dP~l~~~ 308 (326)
.+.|+.+.... ......++.+.++.+.. ++||+ +.|||.|++++..+++.|||+|.+|++++ .||....+
T Consensus 170 i~~L~gyt~~~~~~~a~~~~~~~elL~ei~~~~-~iPVV~~AeGGI~TPedaa~vme~GAdgVaVGSaI~ks~dP~~~ak 248 (293)
T PRK04180 170 IRRLTSMSEDELYTAAKELQAPYELVKEVAELG-RLPVVNFAAGGIATPADAALMMQLGADGVFVGSGIFKSGDPEKRAR 248 (293)
T ss_pred HHHHhCCCHHHHHhhccccCCCHHHHHHHHHhC-CCCEEEEEeCCCCCHHHHHHHHHhCCCEEEEcHHhhcCCCHHHHHH
Confidence 01122211100 01224578888888764 89998 99999999999999999999999999998 57777777
Q ss_pred hHHHhhhCCCCC
Q 020423 309 HVDTAIYGAPSS 320 (326)
Q Consensus 309 ~i~~~~~~~~~~ 320 (326)
.+.+.+....+|
T Consensus 249 afv~ai~~~~~~ 260 (293)
T PRK04180 249 AIVEATTHYDDP 260 (293)
T ss_pred HHHHHHHHcCCH
Confidence 777777766665
|
|
| >cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS) | Back alignment and domain information |
|---|
Probab=99.55 E-value=7.6e-14 Score=130.19 Aligned_cols=193 Identities=15% Similarity=0.100 Sum_probs=127.8
Q ss_pred CCcEEEccCCCCCh-HHHHHHHHHcCCCcEEEecceeeccccccccchhhhhhcCCCCCcEEEEecCCCH-HHHHHHHHH
Q 020423 68 PPWFSVAPMMDWTD-NHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSNL-DNLAKATEL 145 (326)
Q Consensus 68 ~nrivlAPM~~~s~-~~~r~~~~~~Gg~gli~te~~~~~~~~~~~~~~~~~~~~~~~~~piivQL~g~~~-~~f~~aA~~ 145 (326)
+.||+++||.++++ +.|...+++.||.|++-......+.+....+..+.+ .+++|+.++|....+ +.+.+..+.
T Consensus 2 ~yPIiqgpM~~vs~~~~LaaAVS~AGgLG~la~~~~~~e~l~~~i~~~~~l----~tdkPfGVnl~~~~~~~~~~~~l~v 77 (320)
T cd04743 2 RYPIVQGPMTRVSDVAEFAVAVAEGGGLPFIALALMRGEQVKALLEETAEL----LGDKPWGVGILGFVDTELRAAQLAV 77 (320)
T ss_pred CCCEECCCcCCCCCcHHHHHHHHhCCccccCCCCCCCHHHHHHHHHHHHHh----ccCCCeEEEEeccCCCcchHHHHHH
Confidence 57899999999998 899999999999998877665543332111112211 157899999964322 235566777
Q ss_pred HHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHHHHhhhC
Q 020423 146 ANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLS 225 (326)
Q Consensus 146 a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~ 225 (326)
+.+.+.+.|.+.++.|. . ++.++ ..|+.+...+. +..+ ++.+++.
T Consensus 78 i~e~~v~~V~~~~G~P~------------------~----~~~lk-~~Gi~v~~~v~-------s~~~-----A~~a~~~ 122 (320)
T cd04743 78 VRAIKPTFALIAGGRPD------------------Q----ARALE-AIGISTYLHVP-------SPGL-----LKQFLEN 122 (320)
T ss_pred HHhcCCcEEEEcCCChH------------------H----HHHHH-HCCCEEEEEeC-------CHHH-----HHHHHHc
Confidence 78889999988765442 1 13333 24666654421 2222 3445689
Q ss_pred CccEEEEecCCcccCCCCcCCcCCCCCc-cHHHHHH-HHh-----cCCCceEEEeCCCCCHHHHHHHHHhCC--------
Q 020423 226 PTRHFIIHSRKALLNGISPAENRTIPPL-KYEYYYA-LLR-----DFPDLTFTLNGGINTVDEVNAALRKGA-------- 290 (326)
Q Consensus 226 Gvd~I~v~~~~~~~~g~~~~~~~~~~~~-~~~~i~~-i~~-----~~~~iPVIa~GgI~s~~da~~~l~~Ga-------- 290 (326)
|+|.|+++|.+. +|+.+. ..+. -+..+.. +.+ ...++|||+.|||.+.+.+..++..||
T Consensus 123 GaD~vVaqG~EA--GGH~G~----~~t~~L~~~v~~~l~~~~~~~~~~~iPViAAGGI~dgr~~aaalaLGA~~~~~Ga~ 196 (320)
T cd04743 123 GARKFIFEGREC--GGHVGP----RSSFVLWESAIDALLAANGPDKAGKIHLLFAGGIHDERSAAMVSALAAPLAERGAK 196 (320)
T ss_pred CCCEEEEecCcC--cCCCCC----CCchhhHHHHHHHHHHhhcccccCCccEEEEcCCCCHHHHHHHHHcCCcccccccc
Confidence 999999999875 344331 1111 1222211 211 113799999999999999999999887
Q ss_pred ChhhhhHHHHhCCch
Q 020423 291 HHVMVGRAAYQNPWY 305 (326)
Q Consensus 291 D~V~iGRall~dP~l 305 (326)
++|+||+.++..++-
T Consensus 197 ~GV~mGTrFl~t~Es 211 (320)
T cd04743 197 VGVLMGTAYLFTEEA 211 (320)
T ss_pred cEEEEccHHhcchhh
Confidence 899999999987774
|
NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. |
| >cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.55 E-value=6.8e-13 Score=125.94 Aligned_cols=217 Identities=15% Similarity=0.195 Sum_probs=136.2
Q ss_pred ccccCeecCCcEEEccCCCC----ChH--HHHHHHHHcCCCcEEEecceeeccccccccchhhhhhcCCCCCcEEEEec-
Q 020423 60 EMVARQYLPPWFSVAPMMDW----TDN--HYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIG- 132 (326)
Q Consensus 60 ~~ig~~~l~nrivlAPM~~~----s~~--~~r~~~~~~Gg~gli~te~~~~~~~~~~~~~~~~~~~~~~~~~piivQL~- 132 (326)
.++=|.+++-|+++|||+.. .+. .+...+.+.| ..++.+-..+ ..++...+....+.|+.+||+
T Consensus 56 ~~~lG~~~~~Pi~iaP~~~~~~~~~~ge~~~AraA~~~g-i~~~lss~s~--------~s~e~v~~~~~~~~~~w~Qly~ 126 (344)
T cd02922 56 TTILGHKVSLPFFISPAALAKLAHPDGELNLARAAGKHG-ILQMISTNAS--------CSLEEIVDARPPDQPLFFQLYV 126 (344)
T ss_pred eEECCcccCCceeeChHHHhhhCCchHHHHHHHHHHHcC-CCEEecCccc--------CCHHHHHHhcCCCCcEEEEEee
Confidence 33446778889999999732 222 3333444444 4443332221 012222222223468899996
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEecCCCCCCccc----CCC--------------Cc----cccc---cCCHHHHHHHHH
Q 020423 133 GSNLDNLAKATELANAYNYDEINLNCGCPSPKVA----GHG--------------CF----GVSL---MLDPKFVGEAMS 187 (326)
Q Consensus 133 g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~----r~d--------------~y----Ggsl---~~r~~~l~eiv~ 187 (326)
..+.+...+..++++++|++.+-++...|..-+. |++ .+ +... ..++....+.++
T Consensus 127 ~~d~~~~~~l~~ra~~ag~~alvltvD~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 206 (344)
T cd02922 127 NKDRTKTEELLKRAEKLGAKAIFLTVDAPVLGKRERDERLKAEEAVSDGPAGKKTKAKGGGAGRAMSGFIDPTLTWDDIK 206 (344)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEECCCCCcCcchhhhhhcCCcCccccccccccccccchHHHHHhhccCCCCCHHHHH
Confidence 4577778888999999999999999988743110 100 00 0000 012334567899
Q ss_pred HHHhcCCCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHh---c
Q 020423 188 VIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLR---D 264 (326)
Q Consensus 188 avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~---~ 264 (326)
.+++.++.|+.+| +.. +.++ ++.+.++|+|.|+|++.. |... + ...++ .+.+.++.+ +
T Consensus 207 ~l~~~~~~PvivK---gv~---~~~d-----A~~a~~~G~d~I~vsnhg----G~~~-d-~~~~~--~~~L~~i~~~~~~ 267 (344)
T cd02922 207 WLRKHTKLPIVLK---GVQ---TVED-----AVLAAEYGVDGIVLSNHG----GRQL-D-TAPAP--IEVLLEIRKHCPE 267 (344)
T ss_pred HHHHhcCCcEEEE---cCC---CHHH-----HHHHHHcCCCEEEEECCC----cccC-C-CCCCH--HHHHHHHHHHHHH
Confidence 9999999999999 221 2222 234567999999998632 2211 1 11222 344444433 2
Q ss_pred C-CCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhCCc
Q 020423 265 F-PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW 304 (326)
Q Consensus 265 ~-~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~dP~ 304 (326)
. .++|||+.|||+++.|+.+++..|||+|+|||++|..+.
T Consensus 268 ~~~~~~vi~~GGIr~G~Dv~kalaLGA~aV~iG~~~l~~l~ 308 (344)
T cd02922 268 VFDKIEVYVDGGVRRGTDVLKALCLGAKAVGLGRPFLYALS 308 (344)
T ss_pred hCCCceEEEeCCCCCHHHHHHHHHcCCCEEEECHHHHHHHh
Confidence 2 269999999999999999999999999999999998876
|
FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit. |
| >KOG1436 consensus Dihydroorotate dehydrogenase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.4e-12 Score=118.61 Aligned_cols=237 Identities=13% Similarity=0.152 Sum_probs=151.1
Q ss_pred ccccCeecCCcEEEccCCCCChHHHHHHHHHcCCCcEEEecceeeccccc---------------------cccchh---
Q 020423 60 EMVARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIY---------------------QQGNLD--- 115 (326)
Q Consensus 60 ~~ig~~~l~nrivlAPM~~~s~~~~r~~~~~~Gg~gli~te~~~~~~~~~---------------------~~~~~~--- 115 (326)
.++=|.+++|+|.+|.=-.-+...+..+.. -|+|.+.++-+.+.+.-- +.+.++
T Consensus 86 ~k~~g~~f~NPiglAAGfdk~~eaidgL~~--~gfG~ieigSvTp~pqeGNPkPRvfrl~ed~~vINryGfns~Gi~~vl 163 (398)
T KOG1436|consen 86 TKVLGRKFSNPIGLAAGFDKNAEAIDGLAN--SGFGFIEIGSVTPKPQEGNPKPRVFRLPEDLAVINRYGFNSEGIDAVL 163 (398)
T ss_pred hHHhhhhccCchhhhhccCcchHHHHHHHh--CCCceEEecccccCCCCCCCCCceEecccccchhhccCCCcccHHHHH
Confidence 345577899999998766656666666654 468999888776543210 011111
Q ss_pred ------hhhhcCCCCCcEEEEecCCC-----HHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHH
Q 020423 116 ------RFLAFSPEQHPIVLQIGGSN-----LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGE 184 (326)
Q Consensus 116 ------~~~~~~~~~~piivQL~g~~-----~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~e 184 (326)
+..+..+...++.++|..+. ..+|.+-.+..-+. +|..+||.+||+..-.|.-+| -.-+.+
T Consensus 164 ~rl~~~r~~~~~e~~~~lGVnlgknk~s~d~~~dy~~gV~~~g~~-adylviNvSsPNtpGlr~lq~-------k~~L~~ 235 (398)
T KOG1436|consen 164 QRLRAKRQAKYPEAPAKLGVNLGKNKTSEDAILDYVEGVRVFGPF-ADYLVINVSSPNTPGLRSLQK-------KSDLRK 235 (398)
T ss_pred HHHHHHHHhcCCCccccceeeeccccCCcchHHHHHHHhhhcccc-cceEEEeccCCCCcchhhhhh-------HHHHHH
Confidence 11123445566889986442 34555555544444 699999999998653333222 222333
Q ss_pred HHHHHHhc-------CCCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCc-------------ccCCCCc
Q 020423 185 AMSVIAAN-------TNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKA-------------LLNGISP 244 (326)
Q Consensus 185 iv~avr~~-------~~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~-------------~~~g~~~ 244 (326)
.+..+..+ ...|+.+|+.+..... +.+| ++..+.+.++|.+++++.+. ..+|.++
T Consensus 236 ll~~v~~a~~~~~~~~~~pvl~kiapDL~~~-el~d----ia~v~kk~~idg~IvsnttVsrp~~~~~~~~~~etGGLsG 310 (398)
T KOG1436|consen 236 LLTKVVQARDKLPLGKKPPVLVKIAPDLSEK-ELKD----IALVVKKLNIDGLIVSNTTVSRPKASLVNKLKEETGGLSG 310 (398)
T ss_pred HHHHHHHHHhccccCCCCceEEEeccchhHH-HHHH----HHHHHHHhCccceeecCceeecCccccccccccccCCCCC
Confidence 33333221 2458999998864331 2333 45556778999999876431 1234444
Q ss_pred CCcCCCCCccHHHHHHHHhcC-CCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhC-CchhHHhHHHhhh
Q 020423 245 AENRTIPPLKYEYYYALLRDF-PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN-PWYTLGHVDTAIY 315 (326)
Q Consensus 245 ~~~~~~~~~~~~~i~~i~~~~-~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~d-P~l~~~~i~~~~~ 315 (326)
+...+...+.+++..+.. .+||||++|||.|.+|+.+.++.||++||+++++... |- ...+|+..+.
T Consensus 311 ---~plk~~st~~vR~mY~lt~g~IpiIG~GGV~SG~DA~EkiraGASlvQlyTal~yeGp~-i~~kIk~El~ 379 (398)
T KOG1436|consen 311 ---PPLKPISTNTVRAMYTLTRGKIPIIGCGGVSSGKDAYEKIRAGASLVQLYTALVYEGPA-IIEKIKRELS 379 (398)
T ss_pred ---CccchhHHHHHHHHHHhccCCCceEeecCccccHhHHHHHhcCchHHHHHHHHhhcCch-hHHHHHHHHH
Confidence 344555666666665543 4899999999999999999999999999999999876 66 5677776543
|
|
| >COG2070 Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.8e-13 Score=127.23 Aligned_cols=204 Identities=13% Similarity=0.090 Sum_probs=128.6
Q ss_pred ccccccCeecCCcEEEccCCCCChHHHHHHHHHcCCCcEEEecceeeccccccccchhhhhhcCCCCCcEEEEecC----
Q 020423 58 KAEMVARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGG---- 133 (326)
Q Consensus 58 ~p~~ig~~~l~nrivlAPM~~~s~~~~r~~~~~~Gg~gli~te~~~~~~~~~~~~~~~~~~~~~~~~~piivQL~g---- 133 (326)
++..++.+.++.+|+++||..+|..++...+.+.||.|.+-......+.+......... ..++|...+.++
T Consensus 4 ~~~~~~~~~i~~PIiq~gM~~vs~~~LA~Avs~aGglG~ia~~~~~~e~l~~~i~~~~~-----~~~~p~~~~~f~~~~~ 78 (336)
T COG2070 4 STRFILLLGIKYPIIQGGMAGVSTPELAAAVSNAGGLGIIASGGLPAEQLRAEIRKIRA-----LTDKPFVANNFGSAPA 78 (336)
T ss_pred cchhhcccCccCCeecCCccccCcHHHHHHHhccCCccccccccCCHHHHHHHHHHHHH-----hcCCcchhcccccccc
Confidence 45667888899999999999999999999999999999444333333222111111111 133443333332
Q ss_pred --------CCHHHHHHHHHHHHH-CCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccC
Q 020423 134 --------SNLDNLAKATELANA-YNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIG 204 (326)
Q Consensus 134 --------~~~~~f~~aA~~a~~-aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g 204 (326)
...+.+.+....+.+ +|...+...++-|. .+.++.++. .+..+..++..
T Consensus 79 ~v~~~~l~~~~~~~~~~~~~ii~~~~vpvv~~~~g~~~--------------------~~~i~~~~~-~g~~v~~~v~~- 136 (336)
T COG2070 79 PVNVNILVARRNAAEAGVDAIIEGAGVPVVSTSFGAPP--------------------AEFVARLKA-AGIKVIHSVIT- 136 (336)
T ss_pred cchhheecccccchHHhhhhHHhcCCCCEEeccCCCCc--------------------HHHHHHHHH-cCCeEEEEeCC-
Confidence 222344444444433 36555555544211 123444433 45555554322
Q ss_pred CCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCC-ceEEEeCCCCCHHHHH
Q 020423 205 VDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPD-LTFTLNGGINTVDEVN 283 (326)
Q Consensus 205 ~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~-iPVIa~GgI~s~~da~ 283 (326)
.. -++..++.|+|.+++++.+. +|+.+. ....+....++.++++.+ + ||||++|||.|.+++.
T Consensus 137 ------~~-----~A~~~~~~G~d~vI~~g~eA--GGH~g~--~~~~~~t~~Lv~ev~~~~-~~iPViAAGGI~dg~~i~ 200 (336)
T COG2070 137 ------VR-----EALKAERAGADAVIAQGAEA--GGHRGG--VDLEVSTFALVPEVVDAV-DGIPVIAAGGIADGRGIA 200 (336)
T ss_pred ------HH-----HHHHHHhCCCCEEEecCCcC--CCcCCC--CCCCccHHHHHHHHHHHh-cCCCEEEecCccChHHHH
Confidence 11 24456789999999998764 344331 011222367788888776 7 9999999999999999
Q ss_pred HHHHhCCChhhhhHHHHhCCc
Q 020423 284 AALRKGAHHVMVGRAAYQNPW 304 (326)
Q Consensus 284 ~~l~~GaD~V~iGRall~dP~ 304 (326)
.++..|||+|++|+.++...+
T Consensus 201 AAlalGA~gVq~GT~Fl~t~E 221 (336)
T COG2070 201 AALALGADGVQMGTRFLATKE 221 (336)
T ss_pred HHHHhccHHHHhhhhhhcccc
Confidence 999999999999999997654
|
|
| >cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD | Back alignment and domain information |
|---|
Probab=99.47 E-value=3.8e-13 Score=129.63 Aligned_cols=231 Identities=11% Similarity=0.057 Sum_probs=133.5
Q ss_pred eecCCcEEEccCC-CCChHHHHHHHHHcCCCcEEEecceeeccccccccchhhhhhcCCCCCcEEEEecCC--CHHHHHH
Q 020423 65 QYLPPWFSVAPMM-DWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGS--NLDNLAK 141 (326)
Q Consensus 65 ~~l~nrivlAPM~-~~s~~~~r~~~~~~Gg~gli~te~~~~~~~~~~~~~~~~~~~~~~~~~piivQL~g~--~~~~f~~ 141 (326)
+.++.+|+++||. +++.+++...+.++||.|.+.+...+++.+-.....++..+ ..++|+.+||+++ +++...+
T Consensus 10 lgiryPii~gpMa~Giss~eLVaAvs~AGgLG~lgag~l~~e~l~~~I~~ir~~l---t~~~PfGVNL~~~~~~~~~e~~ 86 (418)
T cd04742 10 YGLRYAYVAGAMARGIASAELVVAMGKAGMLGFFGAGGLPLDEVEQAIERIQAAL---GNGEPYGVNLIHSPDEPELEEG 86 (418)
T ss_pred hCCCccEECCcccCCCCCHHHHHHHHhCCCeeeecCCCCCHHHHHHHHHHHHHhc---cCCCCeEEeeecCCCCchhHHH
Confidence 4578899999999 79999999999999999999888876655433332232211 1178999999864 3343455
Q ss_pred HHHHHHHCCCCEEEecC-CCCCCcccC-CCCccccccCCHHHHHHHHHHHHhcCCCcEEEEecc--------CCCCCccH
Q 020423 142 ATELANAYNYDEINLNC-GCPSPKVAG-HGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRI--------GVDDHDSY 211 (326)
Q Consensus 142 aA~~a~~aG~d~Iein~-g~P~~~~~r-~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~--------g~~~~~~~ 211 (326)
..+.+.+.|...||... ..+.+...+ +.. |-....+-++ .....|..|++. +......+
T Consensus 87 ~v~l~le~gV~~ve~sa~~~~~p~~~~~r~~-G~~~~~~g~~----------~~~~~ViakVsr~evAs~~f~ppp~~~v 155 (418)
T cd04742 87 LVDLFLRHGVRVVEASAFMQLTPALVRYRAK-GLRRDADGRV----------QIANRIIAKVSRPEVAEAFMSPAPERIL 155 (418)
T ss_pred HHHHHHHcCCCEEEeccccCCCcchhhHHhc-CCcccccccc----------cccceEEEecCChhhhhhhcCCCCHHHH
Confidence 67788889999998853 112111110 000 1000000000 001223333311 11111111
Q ss_pred HHHHH------HHHHHhhhCC-ccEEEEecCCcccCCCCcCCcCCCCCc-cHHHHHHHHhcC-------CCceEEEeCCC
Q 020423 212 NQLCD------FIYKVSSLSP-TRHFIIHSRKALLNGISPAENRTIPPL-KYEYYYALLRDF-------PDLTFTLNGGI 276 (326)
Q Consensus 212 ~e~~~------~ia~~le~~G-vd~I~v~~~~~~~~g~~~~~~~~~~~~-~~~~i~~i~~~~-------~~iPVIa~GgI 276 (326)
+.+.+ .-++.+++.| +|.|+++ .+. +|+.+. .+.. -+..+.+++.+. .++|||+.|||
T Consensus 156 ~~L~~~G~it~~eA~~A~~~g~aD~Ivvq-~EA--GGH~g~----~~~~~Llp~v~~l~d~v~~~~~~~~~ipViAAGGI 228 (418)
T cd04742 156 KKLLAEGKITEEQAELARRVPVADDITVE-ADS--GGHTDN----RPLSVLLPTIIRLRDELAARYGYRRPIRVGAAGGI 228 (418)
T ss_pred HHHHHcCCCCHHHHHHHHhCCCCCEEEEc-ccC--CCCCCC----ccHHhHHHHHHHHHHHHhhccccCCCceEEEECCC
Confidence 11100 0134556678 5999998 333 344321 1111 122233332221 16999999999
Q ss_pred CCHHHHHHHHHhCCChhhhhHHHHhCCchh-HHhHHHhhhC
Q 020423 277 NTVDEVNAALRKGAHHVMVGRAAYQNPWYT-LGHVDTAIYG 316 (326)
Q Consensus 277 ~s~~da~~~l~~GaD~V~iGRall~dP~l~-~~~i~~~~~~ 316 (326)
.|++++..++..|||+|++|+.+++.++-- ....++.+..
T Consensus 229 ~tg~~vaAA~alGAd~V~~GT~flat~Ea~~s~~~K~~L~~ 269 (418)
T cd04742 229 GTPEAAAAAFALGADFIVTGSINQCTVEAGTSDAVKDLLQK 269 (418)
T ss_pred CCHHHHHHHHHcCCcEEeeccHHHhCccccCCHHHHHHHHh
Confidence 999999999999999999999999976632 3444444433
|
NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. |
| >TIGR02708 L_lactate_ox L-lactate oxidase | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.1e-12 Score=122.95 Aligned_cols=207 Identities=16% Similarity=0.143 Sum_probs=130.7
Q ss_pred CeecCCcEEEccCCCC----C--hHHHHHHHHHcCCCcEEEecceeeccccccccchhhhhhcCCCCCcEEEEecCC-CH
Q 020423 64 RQYLPPWFSVAPMMDW----T--DNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGS-NL 136 (326)
Q Consensus 64 ~~~l~nrivlAPM~~~----s--~~~~r~~~~~~Gg~gli~te~~~~~~~~~~~~~~~~~~~~~~~~~piivQL~g~-~~ 136 (326)
|.++.-|+.+|||... . +....+.+.+.| ..++.+-.. ...++...+. ..+.+...||.-. +.
T Consensus 76 G~~~~~Pv~iaP~g~~~l~~p~gE~~~ArAA~~~g-~~~~lSt~s--------s~slEev~~~-~~~~~~wfQlY~~~dr 145 (367)
T TIGR02708 76 GHKLKSPFIMAPVAAHKLANEQGEVATARGVSEFG-SIYTTSSYS--------TADLPEISEA-LNGTPHWFQFYMSKDD 145 (367)
T ss_pred CcccccccccCcHHHhhccCCcHHHHHHHHHHHcC-CCeeecccc--------cCCHHHHHhh-cCCCceEEEEeccCCH
Confidence 5667789999998642 2 334444455554 444333321 1112222221 1245899999864 45
Q ss_pred HHHHHHHHHHHHCCCCEEEecCCCCCCccc----CCC----------------Ccccccc-----CCHHHHHHHHHHHHh
Q 020423 137 DNLAKATELANAYNYDEINLNCGCPSPKVA----GHG----------------CFGVSLM-----LDPKFVGEAMSVIAA 191 (326)
Q Consensus 137 ~~f~~aA~~a~~aG~d~Iein~g~P~~~~~----r~d----------------~yGgsl~-----~r~~~l~eiv~avr~ 191 (326)
+--.+..+|++++||+++-+....|..-+. |++ ..+.... .++.+--+.++++++
T Consensus 146 ~~~~~li~RA~~aG~~alvlTvD~p~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~i~~l~~ 225 (367)
T TIGR02708 146 GINRDIMDRVKADGAKAIVLTADATVGGNREVDVRNGFVFPVGMPIVQEYLPTGAGKSMDNVYKSAKQKLSPRDIEEIAG 225 (367)
T ss_pred HHHHHHHHHHHHcCCCEEEEecCCCCCCcchhhhhcCCCCCCccchhhhhcccCCccchhhhccccCCCCCHHHHHHHHH
Confidence 555788899999999999998776632111 000 0000000 012222366888888
Q ss_pred cCCCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEe--cCCcccCCCCcCCcCCCCCccHHHHHHHHhcC-CCc
Q 020423 192 NTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIH--SRKALLNGISPAENRTIPPLKYEYYYALLRDF-PDL 268 (326)
Q Consensus 192 ~~~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~--~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~-~~i 268 (326)
.++.||.|| |.. ..++ ++.+.++|+|+|.|+ |+..... .+..|+.+.++.+.. .++
T Consensus 226 ~~~~PvivK---Gv~---~~ed-----a~~a~~~Gvd~I~VS~HGGrq~~~----------~~a~~~~L~ei~~av~~~i 284 (367)
T TIGR02708 226 YSGLPVYVK---GPQ---CPED-----ADRALKAGASGIWVTNHGGRQLDG----------GPAAFDSLQEVAEAVDKRV 284 (367)
T ss_pred hcCCCEEEe---CCC---CHHH-----HHHHHHcCcCEEEECCcCccCCCC----------CCcHHHHHHHHHHHhCCCC
Confidence 899999999 322 2222 334557999998775 4432211 233478888877654 369
Q ss_pred eEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHh
Q 020423 269 TFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 301 (326)
Q Consensus 269 PVIa~GgI~s~~da~~~l~~GaD~V~iGRall~ 301 (326)
|||++|||+++.|+.+++..|||+|++||++|.
T Consensus 285 ~vi~dGGIr~g~Dv~KaLalGAd~V~igR~~l~ 317 (367)
T TIGR02708 285 PIVFDSGVRRGQHVFKALASGADLVALGRPVIY 317 (367)
T ss_pred cEEeeCCcCCHHHHHHHHHcCCCEEEEcHHHHH
Confidence 999999999999999999999999999999775
|
Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence. |
| >PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=9.7e-12 Score=116.74 Aligned_cols=198 Identities=12% Similarity=0.057 Sum_probs=128.9
Q ss_pred cccCeecCCcEEEccCCCCChHHHHHHHHHcCCCcEEEecceeeccccccccchhhhhh-cCCCCCcEEEEec-CCCHHH
Q 020423 61 MVARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLA-FSPEQHPIVLQIG-GSNLDN 138 (326)
Q Consensus 61 ~ig~~~l~nrivlAPM~~~s~~~~r~~~~~~Gg~gli~te~~~~~~~~~~~~~~~~~~~-~~~~~~piivQL~-g~~~~~ 138 (326)
++++++++-|++.++|.+..+..+...+++.|+.+.+.- + . .+....+.+ .++. .+++++. +..+++
T Consensus 30 ~~~~~~l~~P~~inAM~t~iN~~LA~~a~~~G~~~~~~k-~-~-------~e~~~~~~r~~~~~--~l~v~~~vg~~~~~ 98 (326)
T PRK05458 30 TLGPRTFKLPVVPANMQTIIDEKIAEWLAENGYFYIMHR-F-D-------PEARIPFIKDMHEQ--GLIASISVGVKDDE 98 (326)
T ss_pred EECCcEecCcEEEecccchhHHHHHHHHHHcCCEEEEec-C-C-------HHHHHHHHHhcccc--ccEEEEEecCCHHH
Confidence 345778999999999988888999988888887665433 1 1 111222222 2222 3456654 334555
Q ss_pred HHHHHHHHHHCC--CCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCC-CcEEEEeccCCCCCccHHHHH
Q 020423 139 LAKATELANAYN--YDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTN-VPVSVKCRIGVDDHDSYNQLC 215 (326)
Q Consensus 139 f~~aA~~a~~aG--~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~-~pv~vK~r~g~~~~~~~~e~~ 215 (326)
+. -+..+.++| .|.|.|.+..+ +.+.+.++++.+|+..+ .||.++ .. .+.++
T Consensus 99 ~~-~~~~Lv~ag~~~d~i~iD~a~g----------------h~~~~~e~I~~ir~~~p~~~vi~g-~V-----~t~e~-- 153 (326)
T PRK05458 99 YD-FVDQLAAEGLTPEYITIDIAHG----------------HSDSVINMIQHIKKHLPETFVIAG-NV-----GTPEA-- 153 (326)
T ss_pred HH-HHHHHHhcCCCCCEEEEECCCC----------------chHHHHHHHHHHHhhCCCCeEEEE-ec-----CCHHH--
Confidence 54 445566665 49999976432 24567888999999884 777776 11 13333
Q ss_pred HHHHHHhhhCCccEEEEecCCccc--CCCCcCCcCCCCCccHH--HHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCC
Q 020423 216 DFIYKVSSLSPTRHFIIHSRKALL--NGISPAENRTIPPLKYE--YYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAH 291 (326)
Q Consensus 216 ~~ia~~le~~Gvd~I~v~~~~~~~--~g~~~~~~~~~~~~~~~--~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD 291 (326)
++.+.++|+|++.|+.+.... .... ......+|. .+.++.+.. ++|||+.|||.++.|+.+++..|||
T Consensus 154 ---a~~l~~aGad~i~vg~~~G~~~~t~~~----~g~~~~~w~l~ai~~~~~~~-~ipVIAdGGI~~~~Di~KaLa~GA~ 225 (326)
T PRK05458 154 ---VRELENAGADATKVGIGPGKVCITKIK----TGFGTGGWQLAALRWCAKAA-RKPIIADGGIRTHGDIAKSIRFGAT 225 (326)
T ss_pred ---HHHHHHcCcCEEEECCCCCcccccccc----cCCCCCccHHHHHHHHHHHc-CCCEEEeCCCCCHHHHHHHHHhCCC
Confidence 234457999999987432210 1000 001112344 477777654 8999999999999999999999999
Q ss_pred hhhhhHHHHhC
Q 020423 292 HVMVGRAAYQN 302 (326)
Q Consensus 292 ~V~iGRall~d 302 (326)
+||+|++++..
T Consensus 226 aV~vG~~~~~~ 236 (326)
T PRK05458 226 MVMIGSLFAGH 236 (326)
T ss_pred EEEechhhcCC
Confidence 99999999843
|
|
| >TIGR02814 pfaD_fam PfaD family protein | Back alignment and domain information |
|---|
Probab=99.44 E-value=4e-12 Score=123.34 Aligned_cols=227 Identities=11% Similarity=0.034 Sum_probs=130.1
Q ss_pred CeecCCcEEEccCC-CCChHHHHHHHHHcCCCcEEEecceeeccccccccchhhhhhcCCCCCc-EEEEecCCC--HHHH
Q 020423 64 RQYLPPWFSVAPMM-DWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHP-IVLQIGGSN--LDNL 139 (326)
Q Consensus 64 ~~~l~nrivlAPM~-~~s~~~~r~~~~~~Gg~gli~te~~~~~~~~~~~~~~~~~~~~~~~~~p-iivQL~g~~--~~~f 139 (326)
-+.++.+|+++||. ++|++++...+.++||.|.+.+...+.+.+-.....++..+ .+.| +.+||+++. ++.-
T Consensus 14 ~lgiryPiiqgpMa~GiSs~eLVaAVs~AGgLG~lgag~l~~e~l~~~I~~ir~~~----~~~p~fGVNL~~~~~~~~~e 89 (444)
T TIGR02814 14 DYGVRYAYVAGAMANGIASAELVIAMGRAGILGFFGAGGLPLEEVEQAIHRIQQAL----PGGPAYGVNLIHSPSDPALE 89 (444)
T ss_pred HhCCCCcEECccccCCCCCHHHHHHHHhCCceeeeCCCCCCHHHHHHHHHHHHHhc----CCCCceEEEecccCCCcccH
Confidence 35678999999999 79999999999999999999888877655433333333321 2335 999998753 2222
Q ss_pred HHHHHHHHHCCCCEEEecCC---CCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEecc--------CCCCC
Q 020423 140 AKATELANAYNYDEINLNCG---CPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRI--------GVDDH 208 (326)
Q Consensus 140 ~~aA~~a~~aG~d~Iein~g---~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~--------g~~~~ 208 (326)
.+..+.+.+.|.+.||.... .|.....| .. |.....+-+. .....|..|++. +....
T Consensus 90 ~~~v~l~l~~~V~~veasa~~~~~p~~v~~r-~~-G~~~~~~g~~----------~~~~~ViakVsr~~vAs~f~~p~p~ 157 (444)
T TIGR02814 90 WGLVDLLLRHGVRIVEASAFMQLTPALVRYR-AK-GLHRDADGRV----------VIRNRLIAKVSRPEVAEAFMSPAPA 157 (444)
T ss_pred HHHHHHHHHcCCCEEEeccccCCCcchhhhh-hc-cccccccccc----------cccceEEEecCCHHHHHHhcCCCcH
Confidence 34556677889999988633 22211001 00 1100000000 001123333210 00000
Q ss_pred ccHHHHHH------HHHHHhhhCCc-cEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHH---hcC-------CCceEE
Q 020423 209 DSYNQLCD------FIYKVSSLSPT-RHFIIHSRKALLNGISPAENRTIPPLKYEYYYALL---RDF-------PDLTFT 271 (326)
Q Consensus 209 ~~~~e~~~------~ia~~le~~Gv-d~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~---~~~-------~~iPVI 271 (326)
..++.+.+ .-++++++.|+ |.|+++ .+. +|+.+. .+. +.++..+. +.. ..|||+
T Consensus 158 ~~v~~L~~~G~it~eEA~~a~~~g~aD~Ivve-~EA--GGHtg~----~~~--~~Llp~i~~lrd~v~~~~~y~~~VpVi 228 (444)
T TIGR02814 158 HILQKLLAEGRITREEAELARRVPVADDICVE-ADS--GGHTDN----RPL--VVLLPAIIRLRDTLMRRYGYRKPIRVG 228 (444)
T ss_pred HHHHHHHHcCCCCHHHHHHHHhCCCCcEEEEe-ccC--CCCCCC----CcH--HHHHHHHHHHHHHHhhcccCCCCceEE
Confidence 00111100 01345567784 999886 332 344321 111 34444442 221 268999
Q ss_pred EeCCCCCHHHHHHHHHhCCChhhhhHHHHhCCchh-HHhHHHhhh
Q 020423 272 LNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYT-LGHVDTAIY 315 (326)
Q Consensus 272 a~GgI~s~~da~~~l~~GaD~V~iGRall~dP~l~-~~~i~~~~~ 315 (326)
+.|||.|++++..++..|||+|++|+.++..++-- ....++.+.
T Consensus 229 AAGGI~t~~~vaAAlaLGAdgV~~GT~flat~Esgas~~~K~~L~ 273 (444)
T TIGR02814 229 AAGGIGTPEAAAAAFMLGADFIVTGSVNQCTVEAGTSDNVKKLLA 273 (444)
T ss_pred EeCCCCCHHHHHHHHHcCCcEEEeccHHHhCccccCCHHHHHHHH
Confidence 99999999999999999999999999999876532 334444443
|
The protein PfaD is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the seed alignment for this model are found in loci presumed to act in polyketide biosyntheses per se. |
| >cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.8e-12 Score=121.75 Aligned_cols=213 Identities=15% Similarity=0.124 Sum_probs=133.7
Q ss_pred ccccCeecCCcEEEccCCC----CCh--HHHHHHHHHcCCCcEEEecceeeccccccccchhhhhhcCCCCCcEEEEecC
Q 020423 60 EMVARQYLPPWFSVAPMMD----WTD--NHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGG 133 (326)
Q Consensus 60 ~~ig~~~l~nrivlAPM~~----~s~--~~~r~~~~~~Gg~gli~te~~~~~~~~~~~~~~~~~~~~~~~~~piivQL~g 133 (326)
.++=|.++.-|+.+|||.. ..+ ..+.+.+.+.| ..++.+...+ ..+++..+.. .+.+...||+.
T Consensus 64 t~~lG~~~~~P~~iaP~g~~~l~~p~ge~a~AraA~~~g-i~~~lSt~s~--------~s~Eei~~~~-~~~~~wfQlY~ 133 (351)
T cd04737 64 TELLGIKLKTPIIMAPIAAHGLAHATGEVATARGMAEVG-SLFSISTYSN--------TSLEEIAKAS-NGGPKWFQLYM 133 (351)
T ss_pred eEeCCccccchhhhHHHHHHHhcCCchHHHHHHHHHHcC-CCEEecCCCC--------CCHHHHHHhc-CCCCeEEEEee
Confidence 3344677788999999963 123 33444444444 4444333211 1122222111 14579999985
Q ss_pred -CCHHHHHHHHHHHHHCCCCEEEecCCCCCCccc----CCC-----------Cc-----cc-ccc-----CCHHHHHHHH
Q 020423 134 -SNLDNLAKATELANAYNYDEINLNCGCPSPKVA----GHG-----------CF-----GV-SLM-----LDPKFVGEAM 186 (326)
Q Consensus 134 -~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~----r~d-----------~y-----Gg-sl~-----~r~~~l~eiv 186 (326)
.+.+-..+..++++++|+..+-+....|..-+. |++ .+ .+ ... .++.+--+.+
T Consensus 134 ~~d~~~~~~ll~rA~~aG~~alvlTvD~p~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 213 (351)
T cd04737 134 SKDDGFNRSLLDRAKAAGAKAIILTADATVGGNREADIRNKFQFPFGMPNLNHFSEGTGKGKGISEIYAAAKQKLSPADI 213 (351)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCcchHHHHhcCCCCcccchhhhhccccccCcchhhhhhhccCCCCHHHH
Confidence 456667778889999999999998766532111 000 00 00 000 0112334778
Q ss_pred HHHHhcCCCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEe--cCCcccCCCCcCCcCCCCCccHHHHHHHHhc
Q 020423 187 SVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIH--SRKALLNGISPAENRTIPPLKYEYYYALLRD 264 (326)
Q Consensus 187 ~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~--~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~ 264 (326)
+++|+.++.||.+|- .. +.++ ++.+.+.|+|.|+|+ |+....+ .+..++.+.++.+.
T Consensus 214 ~~lr~~~~~PvivKg---v~---~~~d-----A~~a~~~G~d~I~vsnhGGr~ld~----------~~~~~~~l~~i~~a 272 (351)
T cd04737 214 EFIAKISGLPVIVKG---IQ---SPED-----ADVAINAGADGIWVSNHGGRQLDG----------GPASFDSLPEIAEA 272 (351)
T ss_pred HHHHHHhCCcEEEec---CC---CHHH-----HHHHHHcCCCEEEEeCCCCccCCC----------CchHHHHHHHHHHH
Confidence 889998999999992 21 2222 334557999999994 4432211 12346777777665
Q ss_pred CC-CceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhCC
Q 020423 265 FP-DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNP 303 (326)
Q Consensus 265 ~~-~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~dP 303 (326)
.. ++|||++|||+++.|+.+++..|||+|++||+++...
T Consensus 273 ~~~~i~vi~dGGIr~g~Di~kaLalGA~~V~iGr~~l~~l 312 (351)
T cd04737 273 VNHRVPIIFDSGVRRGEHVFKALASGADAVAVGRPVLYGL 312 (351)
T ss_pred hCCCCeEEEECCCCCHHHHHHHHHcCCCEEEECHHHHHHH
Confidence 42 6999999999999999999999999999999999754
|
LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). |
| >PRK06843 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.3e-11 Score=118.80 Aligned_cols=208 Identities=11% Similarity=0.050 Sum_probs=125.6
Q ss_pred cCeecCCcEEEccCCCCChHHHHHHHHHcCCCcEEEecceeeccccccccchhhhh------------------------
Q 020423 63 ARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFL------------------------ 118 (326)
Q Consensus 63 g~~~l~nrivlAPM~~~s~~~~r~~~~~~Gg~gli~te~~~~~~~~~~~~~~~~~~------------------------ 118 (326)
..+.++-||++|||.++++..+.....+.||.|.+-. ..+++.+.......+++.
T Consensus 37 ~~l~l~iPIvsApMd~Vt~~~lA~AvA~aGGlGvI~~-~~~~e~l~~eI~~vk~~~~~~~i~~~~d~~~~~~~~~t~~~~ 115 (404)
T PRK06843 37 KNISLNIPFLSSAMDTVTESQMAIAIAKEGGIGIIHK-NMSIEAQRKEIEKVKTYKFQKTINTNGDTNEQKPEIFTAKQH 115 (404)
T ss_pred hccCCCCCEecCCCCCCCCHHHHHHHHHCCCEEEecC-CCCHHHHHHHHHHHHhhcCCCceeecccccccchhheecccc
Confidence 3556778999999999999999999999999998754 333333221111111100
Q ss_pred --------h----------cCC-CCCc-EEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCC
Q 020423 119 --------A----------FSP-EQHP-IVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLD 178 (326)
Q Consensus 119 --------~----------~~~-~~~p-iivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r 178 (326)
+ ..+ .++. +.+-+ +..++ ..+-++.+.++|+|.|-|-...++
T Consensus 116 ~~~~~~~~d~~~~~~~~~a~~d~~~~l~v~aav-g~~~~-~~~~v~~lv~aGvDvI~iD~a~g~---------------- 177 (404)
T PRK06843 116 LEKSDAYKNAEHKEDFPNACKDLNNKLRVGAAV-SIDID-TIERVEELVKAHVDILVIDSAHGH---------------- 177 (404)
T ss_pred chHHHHHhhhhhhhhcchhhhhhhcCeEEEEEE-eCCHH-HHHHHHHHHhcCCCEEEEECCCCC----------------
Confidence 0 000 1110 11111 22344 445666677799999999654321
Q ss_pred HHHHHHHHHHHHhcC-CCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHH
Q 020423 179 PKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEY 257 (326)
Q Consensus 179 ~~~l~eiv~avr~~~-~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~ 257 (326)
.+.+.++++.+|+.. +.++.++ +..+.++ ++.+.++|+|+|.+.-+.....+ ...........+..
T Consensus 178 ~~~~~~~v~~ik~~~p~~~vi~g------~V~T~e~-----a~~l~~aGaD~I~vG~g~Gs~c~--tr~~~g~g~p~lta 244 (404)
T PRK06843 178 STRIIELVKKIKTKYPNLDLIAG------NIVTKEA-----ALDLISVGADCLKVGIGPGSICT--TRIVAGVGVPQITA 244 (404)
T ss_pred ChhHHHHHHHHHhhCCCCcEEEE------ecCCHHH-----HHHHHHcCCCEEEECCCCCcCCc--ceeecCCCCChHHH
Confidence 345778899998876 5667665 2223433 23345689999987311110000 00000111112333
Q ss_pred ---HHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhCC
Q 020423 258 ---YYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNP 303 (326)
Q Consensus 258 ---i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~dP 303 (326)
+.++.++. ++|||+-|||+++.|+.+++..|||+||+|+++....
T Consensus 245 i~~v~~~~~~~-~vpVIAdGGI~~~~Di~KALalGA~aVmvGs~~agt~ 292 (404)
T PRK06843 245 ICDVYEVCKNT-NICIIADGGIRFSGDVVKAIAAGADSVMIGNLFAGTK 292 (404)
T ss_pred HHHHHHHHhhc-CCeEEEeCCCCCHHHHHHHHHcCCCEEEEcceeeeee
Confidence 34444443 7999999999999999999999999999999998743
|
|
| >cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.39 E-value=6.5e-12 Score=121.62 Aligned_cols=114 Identities=19% Similarity=0.200 Sum_probs=78.8
Q ss_pred CCHHHHHHHHHHHHhcCC-CcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcC---CcCCCCC
Q 020423 177 LDPKFVGEAMSVIAANTN-VPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPA---ENRTIPP 252 (326)
Q Consensus 177 ~r~~~l~eiv~avr~~~~-~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~---~~~~~~~ 252 (326)
..++-+.++++.+|+.++ .||.+|+-.+. ..++ +++.++..|+|+|+|++..... +..+. +...++.
T Consensus 196 ~~~~~l~~~I~~lr~~~~~~pV~vK~~~~~----~~~~----~a~~~~~~g~D~I~VsG~~Ggt-g~~~~~~~~~~g~pt 266 (392)
T cd02808 196 YSIEDLAQLIEDLREATGGKPIGVKLVAGH----GEGD----IAAGVAAAGADFITIDGAEGGT-GAAPLTFIDHVGLPT 266 (392)
T ss_pred CCHHHHHHHHHHHHHhCCCceEEEEECCCC----CHHH----HHHHHHHcCCCEEEEeCCCCCC-CCCcccccccCCccH
Confidence 356778999999999987 99999988752 2222 3445566779999999865311 11110 0011111
Q ss_pred ccHHHHHHHH---hc---CCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHh
Q 020423 253 LKYEYYYALL---RD---FPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 301 (326)
Q Consensus 253 ~~~~~i~~i~---~~---~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~ 301 (326)
...+.++. ++ ..++|||++|||.++.|+.+++..|||+|++||++|.
T Consensus 267 --~~~L~~v~~~~~~~~~~~~i~viasGGI~~g~Dv~kalaLGAd~V~ig~~~l~ 319 (392)
T cd02808 267 --ELGLARAHQALVKNGLRDRVSLIASGGLRTGADVAKALALGADAVGIGTAALI 319 (392)
T ss_pred --HHHHHHHHHHHHHcCCCCCCeEEEECCCCCHHHHHHHHHcCCCeeeechHHHH
Confidence 22333332 21 1269999999999999999999999999999999984
|
GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor. |
| >PLN02535 glycolate oxidase | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.9e-11 Score=115.20 Aligned_cols=214 Identities=15% Similarity=0.130 Sum_probs=133.6
Q ss_pred cccCeecCCcEEEccCCC--C--C--hHHHHHHHHHcCCCcEEEecceeeccccccccchhhhhhcCCCCCcEEEEecC-
Q 020423 61 MVARQYLPPWFSVAPMMD--W--T--DNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGG- 133 (326)
Q Consensus 61 ~ig~~~l~nrivlAPM~~--~--s--~~~~r~~~~~~Gg~gli~te~~~~~~~~~~~~~~~~~~~~~~~~~piivQL~g- 133 (326)
++=|.++.-|+.+||+.. . . +....+.+.+.| .-.+.+-+. ...++...+. .+.+...||+-
T Consensus 65 ~~lG~~~~~P~~iaP~g~~~l~hp~gE~a~AraA~~~g-~~~~lSt~s--------~~slEeva~~--~~~~~wfQlY~~ 133 (364)
T PLN02535 65 TILGYTISAPIMIAPTAMHKLAHPEGEIATARAAAACN-TIMVLSFMA--------SCTVEEVASS--CNAVRFLQLYVY 133 (364)
T ss_pred EECCccccccceechHHHhcccCcchHHHHHHHHHHcC-CCeEecCcc--------cCCHHHHHhc--CCCCeEEEEecc
Confidence 333677778999999863 1 2 334444444444 433332221 1112222111 24579999986
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCc-ccc------c----------------------cCCHHHHHH
Q 020423 134 SNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCF-GVS------L----------------------MLDPKFVGE 184 (326)
Q Consensus 134 ~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~y-Ggs------l----------------------~~r~~~l~e 184 (326)
.+.+--.+..+|++++||.++-+....|..-+...|.. |-. + .-++.+--+
T Consensus 134 ~dr~~~~~ll~RA~~aG~~alvlTvD~p~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tW~ 213 (364)
T PLN02535 134 KRRDIAAQLVQRAEKNGYKAIVLTADVPRLGRREADIKNKMISPQLKNFEGLLSTEVVSDKGSGLEAFASETFDASLSWK 213 (364)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeecCCCCCCchhhhhcCCCCcchhhHhhhhccCCCccccccHHHHHHhccCCCCCHH
Confidence 45677778889999999999999887765321111100 000 0 001122236
Q ss_pred HHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhc
Q 020423 185 AMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRD 264 (326)
Q Consensus 185 iv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~ 264 (326)
-++.+|+.++.||.+|--. +.++ ++.+.++|+|.|.|++......+ ..+.....+.++.+.
T Consensus 214 ~i~~lr~~~~~PvivKgV~------~~~d-----A~~a~~~GvD~I~vsn~GGr~~d--------~~~~t~~~L~ev~~a 274 (364)
T PLN02535 214 DIEWLRSITNLPILIKGVL------TRED-----AIKAVEVGVAGIIVSNHGARQLD--------YSPATISVLEEVVQA 274 (364)
T ss_pred HHHHHHhccCCCEEEecCC------CHHH-----HHHHHhcCCCEEEEeCCCcCCCC--------CChHHHHHHHHHHHH
Confidence 6788888889999999222 2222 23445799999999764321111 112235666676654
Q ss_pred C-CCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhCCc
Q 020423 265 F-PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW 304 (326)
Q Consensus 265 ~-~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~dP~ 304 (326)
. .++|||+.|||+++.|+.+++..|||+|++||++|..+.
T Consensus 275 v~~~ipVi~dGGIr~g~Dv~KALalGA~aV~vGr~~l~~l~ 315 (364)
T PLN02535 275 VGGRVPVLLDGGVRRGTDVFKALALGAQAVLVGRPVIYGLA 315 (364)
T ss_pred HhcCCCEEeeCCCCCHHHHHHHHHcCCCEEEECHHHHhhhh
Confidence 3 369999999999999999999999999999999997654
|
|
| >cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.3e-11 Score=114.55 Aligned_cols=207 Identities=14% Similarity=0.122 Sum_probs=132.6
Q ss_pred ccCeecCCcEEEccCCC----CCh--HHHHHHHHHcCCCcEEEecceeeccccccccchhhhhhcCCCCCcEEEEecCCC
Q 020423 62 VARQYLPPWFSVAPMMD----WTD--NHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSN 135 (326)
Q Consensus 62 ig~~~l~nrivlAPM~~----~s~--~~~r~~~~~~Gg~gli~te~~~~~~~~~~~~~~~~~~~~~~~~~piivQL~g~~ 135 (326)
+=|.++.-|+.+||+.. ..+ ....+.+.+.| ..++.+.+.+ ..+++..+. .+.+...||+..+
T Consensus 58 llG~~~~~P~~iaP~g~~~l~hp~gE~a~AraA~~~g-~~~~lSt~ss--------~siEeva~a--~~~~~wfQLY~~~ 126 (361)
T cd04736 58 LFGKVWSAPLVIAPTGLNGAFWPNGDLALARAAAKAG-IPFVLSTASN--------MSIEDVARQ--ADGDLWFQLYVVH 126 (361)
T ss_pred ECCccccccccccHHHHHhccCCcHHHHHHHHHHHcC-CcEEeeCCCC--------CCHHHHHhh--cCCCeEEEEEecC
Confidence 33667778999999843 233 33444455544 5555444322 112222111 2357999999877
Q ss_pred HHHHHHHHHHHHHCCCCEEEecCCCCCCccc----CCC----------------------------------Cccc---c
Q 020423 136 LDNLAKATELANAYNYDEINLNCGCPSPKVA----GHG----------------------------------CFGV---S 174 (326)
Q Consensus 136 ~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~----r~d----------------------------------~yGg---s 174 (326)
.+--.+..+|++++||+++-+....|..-+. |++ .+.+ .
T Consensus 127 r~~~~~ll~RA~~aG~~alvlTvD~pv~g~R~~d~r~~~~~p~~~~~~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~ 206 (361)
T cd04736 127 RELAELLVKRALAAGYTTLVLTTDVAVNGYRERDLRNGFAIPFRYTPRVLLDGILHPRWLLRFLRNGMPQLANFASDDAI 206 (361)
T ss_pred HHHHHHHHHHHHHcCCCEEEEecCCCCCCCchhhhhcCCCCCcccchhhhhhhccCchhhhhhccccccccccccccccc
Confidence 6666677789999999999997765532111 000 0000 0
Q ss_pred ----c------cCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecC--CcccCCC
Q 020423 175 ----L------MLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSR--KALLNGI 242 (326)
Q Consensus 175 ----l------~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~--~~~~~g~ 242 (326)
. .-++.+.-+.++.+|+.++.|+.+| |. .+.++. +.+.+.|+|.|.|++. +.+.
T Consensus 207 ~~~~~~~~~~~~~d~~~~w~~i~~ir~~~~~pviiK---gV---~~~eda-----~~a~~~G~d~I~VSnhGGrqld--- 272 (361)
T cd04736 207 DVEVQAALMSRQMDASFNWQDLRWLRDLWPHKLLVK---GI---VTAEDA-----KRCIELGADGVILSNHGGRQLD--- 272 (361)
T ss_pred chhhHHHHHHhccCCcCCHHHHHHHHHhCCCCEEEe---cC---CCHHHH-----HHHHHCCcCEEEECCCCcCCCc---
Confidence 0 0122344568899999999999999 22 233332 2334699999999642 2211
Q ss_pred CcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHh
Q 020423 243 SPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 301 (326)
Q Consensus 243 ~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~ 301 (326)
. .+...+.+.++.+.. ++|||+.|||+++.|+.+++..|||+|++||++|.
T Consensus 273 ------~-~~~~~~~L~ei~~~~-~~~vi~dGGIr~g~Dv~KALaLGA~aV~iGr~~l~ 323 (361)
T cd04736 273 ------D-AIAPIEALAEIVAAT-YKPVLIDSGIRRGSDIVKALALGANAVLLGRATLY 323 (361)
T ss_pred ------C-CccHHHHHHHHHHHh-CCeEEEeCCCCCHHHHHHHHHcCCCEEEECHHHHH
Confidence 1 112367777877665 79999999999999999999999999999999983
|
MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). |
| >PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related | Back alignment and domain information |
|---|
Probab=99.35 E-value=5e-12 Score=120.73 Aligned_cols=209 Identities=19% Similarity=0.164 Sum_probs=129.0
Q ss_pred ccccCeecCCcEEEccCCCC------ChHHHHHHHHHcCCCcEEEecceeeccccccccchhhhhhcCCCCCcEEEEecC
Q 020423 60 EMVARQYLPPWFSVAPMMDW------TDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGG 133 (326)
Q Consensus 60 ~~ig~~~l~nrivlAPM~~~------s~~~~r~~~~~~Gg~gli~te~~~~~~~~~~~~~~~~~~~~~~~~~piivQL~g 133 (326)
.++-|.++.-|+.+|||++. .+..+.+.+.+.| ..+...-..+ .. .+...+. .+.+...||+-
T Consensus 50 t~~lG~~~s~P~~iaP~~~~~l~~~~ge~~lAraA~~~G-i~~~lss~s~-~~-------~e~ia~~--~~~~~~~Qly~ 118 (356)
T PF01070_consen 50 TTFLGQKLSMPFFIAPMGGGGLAHPDGERALARAAAKAG-IPMMLSSQSS-AS-------LEEIAAA--SGGPLWFQLYP 118 (356)
T ss_dssp EEETTEEESSSEEEEEESTGGGTSTTHHHHHHHHHHHHT-SEEEEETTCS-SC-------HHHHHHH--CTSEEEEEEEG
T ss_pred eeeCCccCCCCeEEcchhhhhhhccchHHHHHHHHhccC-cceeccCCcc-CC-------HHHHHhh--ccCCeEEEEEE
Confidence 55668899999999999752 2334445566655 4333222211 11 1222111 23789999964
Q ss_pred -CCHHHHHHHHHHHHHCCCCEEEecCCCCCCccc--------------------------CC----------------C-
Q 020423 134 -SNLDNLAKATELANAYNYDEINLNCGCPSPKVA--------------------------GH----------------G- 169 (326)
Q Consensus 134 -~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~--------------------------r~----------------d- 169 (326)
.+.+...+..++++++|++++-++..+|..-+. +. .
T Consensus 119 ~~d~~~~~~~i~rAe~aG~~Al~vtvD~~~~~~R~~d~r~g~~~p~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 198 (356)
T PF01070_consen 119 PRDRELTRDLIRRAEAAGAKALVVTVDAPQEGNRERDLRNGFSVPPKLSPRNLLDGASHPRSGMPRLENNEAPPPGDNGA 198 (356)
T ss_dssp BSSHHHHHHHHHHHHHTTCSEEEEETSHSSHHHBHHHHHHTCCCSTTHCTTCGTTTTTTT-TTTGG-----CSSSSTSTC
T ss_pred ecCHHHHHHHHHHhhcCCCCEEEEECcCcccCCcccccccccCCCcccccccccccccCcccccccccccccccCCCcch
Confidence 467777788899999999999998654321000 00 0
Q ss_pred ---CccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEec--CCcccCCCCc
Q 020423 170 ---CFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHS--RKALLNGISP 244 (326)
Q Consensus 170 ---~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~--~~~~~~g~~~ 244 (326)
.|.... .++.+--+-++.+++.++.||.||--. +.++ ++.+.+.|+|+|.|++ ++....
T Consensus 199 ~~~~~~~~~-~~~~~~w~~i~~~~~~~~~pvivKgv~------~~~d-----a~~~~~~G~~~i~vs~hGGr~~d~---- 262 (356)
T PF01070_consen 199 AAARFVGSQ-FDPSLTWDDIEWIRKQWKLPVIVKGVL------SPED-----AKRAVDAGVDGIDVSNHGGRQLDW---- 262 (356)
T ss_dssp HHHHHHHCH-B-TT-SHHHHHHHHHHCSSEEEEEEE-------SHHH-----HHHHHHTT-SEEEEESGTGTSSTT----
T ss_pred hHHHHHHHh-cCCCCCHHHHHHHhcccCCceEEEecc------cHHH-----HHHHHhcCCCEEEecCCCcccCcc----
Confidence 000011 123344466899999999999999432 2222 2334579999999974 332111
Q ss_pred CCcCCCCCccHHHHHHHHhcCC-CceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHh
Q 020423 245 AENRTIPPLKYEYYYALLRDFP-DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 301 (326)
Q Consensus 245 ~~~~~~~~~~~~~i~~i~~~~~-~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~ 301 (326)
.+...+.+.++++... ++|||+.|||+++.|+.+++..|||+|.+||++|.
T Consensus 263 ------~~~~~~~L~~i~~~~~~~~~i~~dgGir~g~Dv~kalaLGA~~v~igr~~l~ 314 (356)
T PF01070_consen 263 ------GPPTIDALPEIRAAVGDDIPIIADGGIRRGLDVAKALALGADAVGIGRPFLY 314 (356)
T ss_dssp ------S-BHHHHHHHHHHHHTTSSEEEEESS--SHHHHHHHHHTT-SEEEESHHHHH
T ss_pred ------ccccccccHHHHhhhcCCeeEEEeCCCCCHHHHHHHHHcCCCeEEEccHHHH
Confidence 1223566666665443 79999999999999999999999999999999875
|
These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A .... |
| >PRK14024 phosphoribosyl isomerase A; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.6e-11 Score=110.10 Aligned_cols=125 Identities=14% Similarity=0.294 Sum_probs=91.5
Q ss_pred ccccccCCHHHHHHHHHHHHhcCCC--cE---EEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcC
Q 020423 171 FGVSLMLDPKFVGEAMSVIAANTNV--PV---SVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPA 245 (326)
Q Consensus 171 yGgsl~~r~~~l~eiv~avr~~~~~--pv---~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~ 245 (326)
.|+.++++|+++.++++.+.+++.+ ++ .+|+ .||++.. .+..+ +++.+++.|++.+.+|+++.... .+
T Consensus 103 iGs~~l~~p~l~~~i~~~~~~~i~vsld~~~~~v~~-~Gw~~~~--~~~~~-~~~~l~~~G~~~iiv~~~~~~g~-~~-- 175 (241)
T PRK14024 103 IGTAALENPEWCARVIAEHGDRVAVGLDVRGHTLAA-RGWTRDG--GDLWE-VLERLDSAGCSRYVVTDVTKDGT-LT-- 175 (241)
T ss_pred ECchHhCCHHHHHHHHHHhhhhEEEEEEEeccEecc-CCeeecC--ccHHH-HHHHHHhcCCCEEEEEeecCCCC-cc--
Confidence 3777788999999999998776533 33 3444 3665421 23333 34456789999999998875211 11
Q ss_pred CcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHH---hCCChhhhhHHHHhCCchhHHhH
Q 020423 246 ENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR---KGAHHVMVGRAAYQNPWYTLGHV 310 (326)
Q Consensus 246 ~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~---~GaD~V~iGRall~dP~l~~~~i 310 (326)
. .+|+.+.++.+. .++|||++|||.|.+|+.++.+ .|||+|++||+++.++.- .+.+
T Consensus 176 -----G-~d~~~i~~i~~~-~~ipviasGGi~s~~D~~~l~~~~~~GvdgV~igra~~~g~~~-~~~~ 235 (241)
T PRK14024 176 -----G-PNLELLREVCAR-TDAPVVASGGVSSLDDLRALAELVPLGVEGAIVGKALYAGAFT-LPEA 235 (241)
T ss_pred -----C-CCHHHHHHHHhh-CCCCEEEeCCCCCHHHHHHHhhhccCCccEEEEeHHHHcCCCC-HHHH
Confidence 1 259999888876 4999999999999999999874 599999999999998873 4443
|
|
| >PRK11197 lldD L-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.1e-10 Score=111.86 Aligned_cols=212 Identities=13% Similarity=0.089 Sum_probs=130.7
Q ss_pred ccccCeecCCcEEEccCCCC------ChHHHHHHHHHcCCCcEEEecceeeccccccccchhhhhhcCCCCCcEEEEecC
Q 020423 60 EMVARQYLPPWFSVAPMMDW------TDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGG 133 (326)
Q Consensus 60 ~~ig~~~l~nrivlAPM~~~------s~~~~r~~~~~~Gg~gli~te~~~~~~~~~~~~~~~~~~~~~~~~~piivQL~g 133 (326)
.++=|.++.-|+.+||+... .+....+.+.+.| ..++.+.+.+ ..++...+. .+.+...||+-
T Consensus 62 t~llG~~~~~Pi~iAP~g~~~l~hp~gE~~~AraA~~~g-~~~~lSt~ss--------~slEeia~~--~~~~~wfQlY~ 130 (381)
T PRK11197 62 TTLFGEKLSMPVALAPVGLTGMYARRGEVQAARAADAKG-IPFTLSTVSV--------CPIEEVAPA--IKRPMWFQLYV 130 (381)
T ss_pred eEECCcccccchhhChHHHhhccCCchHHHHHHHHHHcC-CCEEeeCCCc--------CCHHHHHhc--cCCCeEEEEEe
Confidence 33446778889999998531 3444455555554 5554444221 112222111 24579999974
Q ss_pred -CCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCC---ccc-------------------------------cc---
Q 020423 134 -SNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGC---FGV-------------------------------SL--- 175 (326)
Q Consensus 134 -~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~---yGg-------------------------------sl--- 175 (326)
.+.+--.+..+|++++||+++-+...+|..-+...|. |-. .+
T Consensus 131 ~~Dr~~~~~li~RA~~aG~~alvlTVD~pv~G~Rerd~rn~~~~p~~~~~~~~~~~~~p~w~~~~~~~~~~~~~~n~~~~ 210 (381)
T PRK11197 131 LRDRGFMRNALERAKAAGCSTLVFTVDMPVPGARYRDAHSGMSGPNAAMRRYLQAVTHPQWAWDVGLNGRPHDLGNISAY 210 (381)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCChhhhhcCCCCCCchhhhHHhhhcCchhhhhhccccCCCcccccccc
Confidence 4667777888999999999999988776422110000 000 00
Q ss_pred ----cCCHHHH------------HHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCccc
Q 020423 176 ----MLDPKFV------------GEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALL 239 (326)
Q Consensus 176 ----~~r~~~l------------~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~ 239 (326)
+...++. =+-++.+|+.++.|+.+|=- .+.++ ++.+.+.|+|.|.|++..
T Consensus 211 ~~~~~g~~~~~~~~~~~~~~~ltW~di~~lr~~~~~pvivKgV------~s~~d-----A~~a~~~Gvd~I~Vs~hG--- 276 (381)
T PRK11197 211 LGKPTGLEDYIGWLGNNFDPSISWKDLEWIRDFWDGPMVIKGI------LDPED-----ARDAVRFGADGIVVSNHG--- 276 (381)
T ss_pred cccccchhHHHHHHHhccCCCCCHHHHHHHHHhCCCCEEEEec------CCHHH-----HHHHHhCCCCEEEECCCC---
Confidence 0011110 12278888889999999922 22322 223456999999997532
Q ss_pred CCCCcCCcCCCCCccHHHHHHHHhcC-CCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHh
Q 020423 240 NGISPAENRTIPPLKYEYYYALLRDF-PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 301 (326)
Q Consensus 240 ~g~~~~~~~~~~~~~~~~i~~i~~~~-~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~ 301 (326)
|... ... +...+.+.++.+.. .++|||+.|||+++.|+.+++..|||+|++||++|.
T Consensus 277 -Gr~~---d~~-~~t~~~L~~i~~a~~~~~~vi~dGGIr~g~Di~KALaLGA~~V~iGr~~l~ 334 (381)
T PRK11197 277 -GRQL---DGV-LSSARALPAIADAVKGDITILADSGIRNGLDVVRMIALGADTVLLGRAFVY 334 (381)
T ss_pred -CCCC---CCc-ccHHHHHHHHHHHhcCCCeEEeeCCcCcHHHHHHHHHcCcCceeEhHHHHH
Confidence 2111 011 12255666665543 379999999999999999999999999999999985
|
|
| >TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial | Back alignment and domain information |
|---|
Probab=99.30 E-value=3e-10 Score=106.33 Aligned_cols=202 Identities=11% Similarity=0.067 Sum_probs=129.6
Q ss_pred ccccCeecCCcEEEccCCCCChHHHHHHHHHcCCCcEEEecceeeccccccccchhhhhh-cCCCCCcEEEEecCCCHHH
Q 020423 60 EMVARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLA-FSPEQHPIVLQIGGSNLDN 138 (326)
Q Consensus 60 ~~ig~~~l~nrivlAPM~~~s~~~~r~~~~~~Gg~gli~te~~~~~~~~~~~~~~~~~~~-~~~~~~piivQL~g~~~~~ 138 (326)
.++++++++-|++.+.|.+..+..+...+++.|+.+.+ -.+ .++ ....+.+ .++.+-++++.+ |..+++
T Consensus 26 t~~~~~~l~~P~~inAM~t~in~~LA~~a~~~G~~~i~-hK~-~~E-------~~~sfvrk~k~~~L~v~~Sv-G~t~e~ 95 (321)
T TIGR01306 26 VTLGKHKFKLPVVPANMQTIIDEKLAEQLAENGYFYIM-HRF-DEE-------SRIPFIKDMQERGLFASISV-GVKACE 95 (321)
T ss_pred EEECCcEecCcEEeeccchhhhHHHHHHHHHcCCEEEE-ecC-CHH-------HHHHHHHhccccccEEEEEc-CCCHHH
Confidence 44558899999999999888899999988888765433 222 211 1112222 222332233333 556777
Q ss_pred HHHHHHHHHHCC--CCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHH
Q 020423 139 LAKATELANAYN--YDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 216 (326)
Q Consensus 139 f~~aA~~a~~aG--~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~ 216 (326)
+.+....++. | .|.|-+-.+. + ..+.+.+.++.+|+..+.|+.++=.. .+.+.
T Consensus 96 ~~r~~~lv~a-~~~~d~i~~D~ah--------g--------~s~~~~~~i~~i~~~~p~~~vi~GnV-----~t~e~--- 150 (321)
T TIGR01306 96 YEFVTQLAEE-ALTPEYITIDIAH--------G--------HSNSVINMIKHIKTHLPDSFVIAGNV-----GTPEA--- 150 (321)
T ss_pred HHHHHHHHhc-CCCCCEEEEeCcc--------C--------chHHHHHHHHHHHHhCCCCEEEEecC-----CCHHH---
Confidence 7777766554 6 5888875321 1 36678899999999887675454222 13322
Q ss_pred HHHHHhhhCCccEEEEe---cCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChh
Q 020423 217 FIYKVSSLSPTRHFIIH---SRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHV 293 (326)
Q Consensus 217 ~ia~~le~~Gvd~I~v~---~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V 293 (326)
++.+.++|+|.|.|+ |+..+..-..+. ..+......+.++++.. ++|||+.|||++..|+.+++..|||+|
T Consensus 151 --a~~l~~aGad~I~V~~G~G~~~~tr~~~g~---g~~~~~l~ai~ev~~a~-~~pVIadGGIr~~~Di~KALa~GAd~V 224 (321)
T TIGR01306 151 --VRELENAGADATKVGIGPGKVCITKIKTGF---GTGGWQLAALRWCAKAA-RKPIIADGGIRTHGDIAKSIRFGASMV 224 (321)
T ss_pred --HHHHHHcCcCEEEECCCCCccccceeeecc---CCCchHHHHHHHHHHhc-CCeEEEECCcCcHHHHHHHHHcCCCEE
Confidence 334567999999998 332211110010 11111134677776654 899999999999999999999999999
Q ss_pred hhhHHHHhC
Q 020423 294 MVGRAAYQN 302 (326)
Q Consensus 294 ~iGRall~d 302 (326)
|+||.+-..
T Consensus 225 mig~~~ag~ 233 (321)
T TIGR01306 225 MIGSLFAGH 233 (321)
T ss_pred eechhhcCc
Confidence 999988543
|
A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages. |
| >PLN02979 glycolate oxidase | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.1e-10 Score=108.52 Aligned_cols=212 Identities=15% Similarity=0.150 Sum_probs=132.7
Q ss_pred ccccCeecCCcEEEccCCC----CChHH--HHHHHHHcCCCcEEEecceeeccccccccchhhhhhcCCCCCcEEEEecC
Q 020423 60 EMVARQYLPPWFSVAPMMD----WTDNH--YRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGG 133 (326)
Q Consensus 60 ~~ig~~~l~nrivlAPM~~----~s~~~--~r~~~~~~Gg~gli~te~~~~~~~~~~~~~~~~~~~~~~~~~piivQL~g 133 (326)
.++=|.++.-|+.+||+.. ..+.+ ..+.+.+.| .-++.+-+. ...++...+. .+.+...||+.
T Consensus 61 t~llG~~~~~P~~iAP~g~~~l~hpdgE~a~ARAA~~ag-i~~~lSt~s--------s~slEeIa~a--~~~~~wfQLY~ 129 (366)
T PLN02979 61 TTVLGFKISMPIMVAPTAMQKMAHPDGEYATARAASAAG-TIMTLSSWA--------TSSVEEVAST--GPGIRFFQLYV 129 (366)
T ss_pred eEECCcccCccceecHHHHHhhCCCChHHHHHHHHHHcC-CCeeeccCc--------CCCHHHHHhc--cCCCeEEEEee
Confidence 4455778888999999863 23433 444455444 444333321 1122332221 23579999985
Q ss_pred -CCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCC---cc-------ccc----------------------cCCHH
Q 020423 134 -SNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGC---FG-------VSL----------------------MLDPK 180 (326)
Q Consensus 134 -~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~---yG-------gsl----------------------~~r~~ 180 (326)
.+.+--.+..+||+++||+++-+....|..-+...|. |- ..+ .-++.
T Consensus 130 ~~Dr~~~~~ll~RA~~aG~~AlvlTVD~pv~G~R~rd~rn~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (366)
T PLN02979 130 YKNRNVVEQLVRRAERAGFKAIALTVDTPRLGRRESDIKNRFTLPPNLTLKNFEGLDLGKMDEANDSGLASYVAGQIDRT 209 (366)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEEecCCCCCCchhhhccCCCCCcccchhhhhhccccCCCcccchhHHHHHhhcCCCC
Confidence 4666677788999999999999987766531110000 00 000 00111
Q ss_pred HHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHH
Q 020423 181 FVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYA 260 (326)
Q Consensus 181 ~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~ 260 (326)
+-=+-++.+|+.++.||.+|--. +.++ ++.+.+.|+|.|+|++...... + . .+...+.+.+
T Consensus 210 ltW~dl~wlr~~~~~PvivKgV~------~~~d-----A~~a~~~Gvd~I~VsnhGGrql-----d--~-~p~t~~~L~e 270 (366)
T PLN02979 210 LSWKDVQWLQTITKLPILVKGVL------TGED-----ARIAIQAGAAGIIVSNHGARQL-----D--Y-VPATISALEE 270 (366)
T ss_pred CCHHHHHHHHhccCCCEEeecCC------CHHH-----HHHHHhcCCCEEEECCCCcCCC-----C--C-chhHHHHHHH
Confidence 22266888999999999999322 2222 2234579999999986532110 1 1 1223566666
Q ss_pred HHhcC-CCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHh
Q 020423 261 LLRDF-PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 301 (326)
Q Consensus 261 i~~~~-~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~ 301 (326)
+.+.. .++|||+.|||+++.|+.+++..|||+|++||++|.
T Consensus 271 i~~~~~~~~~Vi~dGGIr~G~Di~KALALGAdaV~iGrp~L~ 312 (366)
T PLN02979 271 VVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVF 312 (366)
T ss_pred HHHHhCCCCeEEEeCCcCcHHHHHHHHHcCCCEEEEcHHHHH
Confidence 65543 369999999999999999999999999999999984
|
|
| >cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.24 E-value=4.1e-10 Score=108.02 Aligned_cols=212 Identities=14% Similarity=0.138 Sum_probs=131.6
Q ss_pred ccccCeecCCcEEEccCCC----CCh--HHHHHHHHHcCCCcEEEecceeeccccccccchhhhhhcCCCCCcEEEEecC
Q 020423 60 EMVARQYLPPWFSVAPMMD----WTD--NHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGG 133 (326)
Q Consensus 60 ~~ig~~~l~nrivlAPM~~----~s~--~~~r~~~~~~Gg~gli~te~~~~~~~~~~~~~~~~~~~~~~~~~piivQL~g 133 (326)
.++=|.++.-|+..||+.. ..+ ..+.+.+.+.| .-++.+.+.+ ..++...+.. .+.+...||+.
T Consensus 77 t~llG~~~~~P~~iAP~g~~~l~~p~gE~a~ArAA~~~g-i~~~lSt~ss--------~slEeIa~~~-~~~~~wfQlY~ 146 (383)
T cd03332 77 VELFGRTLAAPLLLAPIGVQELFHPDAELATARAAAELG-VPYILSTASS--------SSIEDVAAAA-GDAPRWFQLYW 146 (383)
T ss_pred eeeCCccccccceechHHHHHhcCCcHHHHHHHHHHHcC-CCeeecCCCC--------CCHHHHHhhc-CCCCcEEEeeC
Confidence 4444677888999999864 233 33444455544 5444443322 1122222111 23578999986
Q ss_pred C-CHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCC---c------------------------cc--ccc-------
Q 020423 134 S-NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGC---F------------------------GV--SLM------- 176 (326)
Q Consensus 134 ~-~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~---y------------------------Gg--sl~------- 176 (326)
. +.+.-.+..++++++||+++-+....|..-+...|. | +. ...
T Consensus 147 ~~dr~~~~~ll~RA~~aG~~alvlTVD~pv~g~Rerd~r~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (383)
T cd03332 147 PKDDDLTESLLRRAEKAGYRVLVVTLDTWSLGWRPRDLDLGYLPFLRGIGIANYFSDPVFRKKLAEPVGEDPEAPPPMEA 226 (383)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCchhhhhcCCCCCccccchhhhhccchhhhccccCCCCCcccccccch
Confidence 5 667777888999999999999976554321110000 0 00 000
Q ss_pred ---------CCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCc
Q 020423 177 ---------LDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAEN 247 (326)
Q Consensus 177 ---------~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~ 247 (326)
-++.+--+-++.+++.++.|+.+| |. .+.++. +.+.+.|+|.|+|++..+. .. +
T Consensus 227 ~~~~~~~~~~~~~~tW~~i~~lr~~~~~pvivK---gV---~~~~dA-----~~a~~~G~d~I~vsnhGGr----~~-d- 289 (383)
T cd03332 227 AVARFVSVFSGPSLTWEDLAFLREWTDLPIVLK---GI---LHPDDA-----RRAVEAGVDGVVVSNHGGR----QV-D- 289 (383)
T ss_pred hHHHHHHhcCCCCCCHHHHHHHHHhcCCCEEEe---cC---CCHHHH-----HHHHHCCCCEEEEcCCCCc----CC-C-
Confidence 011122267888888889999999 22 123322 2334699999999753221 10 0
Q ss_pred CCCCCccHHHHHHHHhcCC-CceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHH
Q 020423 248 RTIPPLKYEYYYALLRDFP-DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAY 300 (326)
Q Consensus 248 ~~~~~~~~~~i~~i~~~~~-~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall 300 (326)
..+...+.+.++.+.+. ++||++.|||+++.|+.+++..|||+|++||+++
T Consensus 290 --~~~~t~~~L~ei~~~~~~~~~vi~dGGIr~G~Dv~KALaLGA~~v~iGr~~l 341 (383)
T cd03332 290 --GSIAALDALPEIVEAVGDRLTVLFDSGVRTGADIMKALALGAKAVLIGRPYA 341 (383)
T ss_pred --CCcCHHHHHHHHHHHhcCCCeEEEeCCcCcHHHHHHHHHcCCCEEEEcHHHH
Confidence 01223666777766543 5999999999999999999999999999999998
|
LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer. |
| >PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.9e-10 Score=108.22 Aligned_cols=212 Identities=15% Similarity=0.159 Sum_probs=131.9
Q ss_pred ccccCeecCCcEEEccCCC----CChHH--HHHHHHHcCCCcEEEecceeeccccccccchhhhhhcCCCCCcEEEEecC
Q 020423 60 EMVARQYLPPWFSVAPMMD----WTDNH--YRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGG 133 (326)
Q Consensus 60 ~~ig~~~l~nrivlAPM~~----~s~~~--~r~~~~~~Gg~gli~te~~~~~~~~~~~~~~~~~~~~~~~~~piivQL~g 133 (326)
.++=|.++.-|+.+||+.. ..+.+ ..+.+.+.| ..++.+-+.+ ..++...+. .+.+...||+-
T Consensus 62 t~~lG~~~~~Pi~iAP~g~~~l~hp~gE~a~AraA~~~g-i~~~lSt~ss--------~slEeva~~--~~~~~wfQlY~ 130 (367)
T PLN02493 62 TTVLGFKISMPIMVAPTAMQKMAHPDGEYATARAASAAG-TIMTLSSWAT--------SSVEEVAST--GPGIRFFQLYV 130 (367)
T ss_pred eEECCccccccceechHHHHhhcCCchHHHHHHHHHHcC-CCeeecCccc--------CCHHHHHhc--CCCCcEEEEee
Confidence 3444677888999999863 23333 344444444 4444433221 112222221 24578999984
Q ss_pred -CCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCC---c------c-ccc----------------------cCCHH
Q 020423 134 -SNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGC---F------G-VSL----------------------MLDPK 180 (326)
Q Consensus 134 -~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~---y------G-gsl----------------------~~r~~ 180 (326)
.+.+.-.+..++++++||.++-+....|..-...+|. | . ..+ ..++.
T Consensus 131 ~~Dr~~~~~li~RA~~aG~~alvlTvD~p~~G~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (367)
T PLN02493 131 YKNRNVVEQLVRRAERAGFKAIALTVDTPRLGRRESDIKNRFTLPPNLTLKNFEGLDLGKMDEANDSGLASYVAGQIDRT 210 (367)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEEcCCCCCCcchhhhcccCCCCcccchhhhhhccccCCCcccchhHHHHHhhcCCCC
Confidence 4666677788999999999999987766531110000 0 0 000 00111
Q ss_pred HHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHH
Q 020423 181 FVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYA 260 (326)
Q Consensus 181 ~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~ 260 (326)
+-=+-++.+|+.++.||.+|--. +.++ ++.+.++|+|.|.|++...... + .. +...+.+.+
T Consensus 211 ~tW~di~wlr~~~~~PiivKgV~------~~~d-----A~~a~~~Gvd~I~VsnhGGrql-----d--~~-~~t~~~L~e 271 (367)
T PLN02493 211 LSWKDVQWLQTITKLPILVKGVL------TGED-----ARIAIQAGAAGIIVSNHGARQL-----D--YV-PATISALEE 271 (367)
T ss_pred CCHHHHHHHHhccCCCEEeecCC------CHHH-----HHHHHHcCCCEEEECCCCCCCC-----C--Cc-hhHHHHHHH
Confidence 11255788899999999999322 2332 2234579999999986532111 1 11 223566666
Q ss_pred HHhcC-CCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHh
Q 020423 261 LLRDF-PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 301 (326)
Q Consensus 261 i~~~~-~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~ 301 (326)
+.+.. .++|||+.|||+++.|+.+++..|||+|++||++|.
T Consensus 272 i~~av~~~~~vi~dGGIr~G~Dv~KALALGA~aV~iGr~~l~ 313 (367)
T PLN02493 272 VVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVF 313 (367)
T ss_pred HHHHhCCCCeEEEeCCcCcHHHHHHHHHcCCCEEEEcHHHHH
Confidence 66543 369999999999999999999999999999999984
|
|
| >PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase | Back alignment and domain information |
|---|
Probab=99.14 E-value=2e-10 Score=108.54 Aligned_cols=201 Identities=18% Similarity=0.205 Sum_probs=121.4
Q ss_pred cCeecCCcEEEccCCCCChHHHHHHHHHcCCCcEEEecceeeccccccccchhhhh----hcCCCCCcEEEEecCCCHHH
Q 020423 63 ARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFL----AFSPEQHPIVLQIGGSNLDN 138 (326)
Q Consensus 63 g~~~l~nrivlAPM~~~s~~~~r~~~~~~Gg~gli~te~~~~~~~~~~~~~~~~~~----~~~~~~~piivQL~g~~~~~ 138 (326)
+++.++-|++-|||.++|+..+.....+.||.|.+--++...++. ...+..++.. .-....-.+.+-+. ...++
T Consensus 32 ~~~~l~iPivsa~MDtVte~~mAiama~~Gglgvih~~~~~e~q~-~~v~~vK~~~~~a~~d~~~~l~V~aavg-~~~~~ 109 (352)
T PF00478_consen 32 RNITLKIPIVSAPMDTVTESEMAIAMARLGGLGVIHRNMSIEEQA-EEVKKVKRYYPNASKDEKGRLLVAAAVG-TRDDD 109 (352)
T ss_dssp TSEEESSSEEE-SSTTTSSHHHHHHHHHTTSEEEEESSSCHHHHH-HHHHHHHTHHTTHHBHTTSCBCEEEEEE-SSTCH
T ss_pred CCEeecCceEecCccccchHHHHHHHHHhcCCceecCCCCHHHHH-HHHhhhccccccccccccccceEEEEec-CCHHH
Confidence 788999999999999999999997766679898877665432211 1111111111 01112223444443 23334
Q ss_pred HHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCC-CcEEEEeccCCCCCccHHHHHHH
Q 020423 139 LAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTN-VPVSVKCRIGVDDHDSYNQLCDF 217 (326)
Q Consensus 139 f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~-~pv~vK~r~g~~~~~~~~e~~~~ 217 (326)
+.+ ++.+.++|+|.|-|.... + ..+.+.+.++.+|+..+ .||.+. +..+.+.
T Consensus 110 ~er-~~~L~~agvD~ivID~a~--------g--------~s~~~~~~ik~ik~~~~~~~viaG------NV~T~e~---- 162 (352)
T PF00478_consen 110 FER-AEALVEAGVDVIVIDSAH--------G--------HSEHVIDMIKKIKKKFPDVPVIAG------NVVTYEG---- 162 (352)
T ss_dssp HHH-HHHHHHTT-SEEEEE-SS--------T--------TSHHHHHHHHHHHHHSTTSEEEEE------EE-SHHH----
T ss_pred HHH-HHHHHHcCCCEEEccccC--------c--------cHHHHHHHHHHHHHhCCCceEEec------ccCCHHH----
Confidence 444 444566899999886421 1 24567788999988874 777764 1223332
Q ss_pred HHHHhhhCCccEEEEecCCc------ccCCCCcCCcCCCCCccHHHH---HHHHhcCCCceEEEeCCCCCHHHHHHHHHh
Q 020423 218 IYKVSSLSPTRHFIIHSRKA------LLNGISPAENRTIPPLKYEYY---YALLRDFPDLTFTLNGGINTVDEVNAALRK 288 (326)
Q Consensus 218 ia~~le~~Gvd~I~v~~~~~------~~~g~~~~~~~~~~~~~~~~i---~~i~~~~~~iPVIa~GgI~s~~da~~~l~~ 288 (326)
++.|.++|+|.|-|--+.. ...|.. .|. ...+ ++..+++ ++|||+-|||.+.-|+.++|..
T Consensus 163 -a~~L~~aGad~vkVGiGpGsiCtTr~v~GvG------~PQ--~tAv~~~a~~a~~~-~v~iIADGGi~~sGDi~KAla~ 232 (352)
T PF00478_consen 163 -AKDLIDAGADAVKVGIGPGSICTTREVTGVG------VPQ--LTAVYECAEAARDY-GVPIIADGGIRTSGDIVKALAA 232 (352)
T ss_dssp -HHHHHHTT-SEEEESSSSSTTBHHHHHHSBS------CTH--HHHHHHHHHHHHCT-TSEEEEESS-SSHHHHHHHHHT
T ss_pred -HHHHHHcCCCEEEEeccCCcccccccccccC------CcH--HHHHHHHHHHhhhc-cCceeecCCcCcccceeeeeee
Confidence 2234569999999853221 011211 122 3333 3445555 8999999999999999999999
Q ss_pred CCChhhhhHHHHhC
Q 020423 289 GAHHVMVGRAAYQN 302 (326)
Q Consensus 289 GaD~V~iGRall~d 302 (326)
|||.||+|+.|-..
T Consensus 233 GAd~VMlG~llAgt 246 (352)
T PF00478_consen 233 GADAVMLGSLLAGT 246 (352)
T ss_dssp T-SEEEESTTTTTB
T ss_pred cccceeechhhccC
Confidence 99999999987543
|
These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. |
| >TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1 | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.1e-09 Score=99.63 Aligned_cols=163 Identities=19% Similarity=0.210 Sum_probs=110.3
Q ss_pred HHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHH
Q 020423 140 AKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIY 219 (326)
Q Consensus 140 ~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia 219 (326)
.+.|+.++++|+-.|------|.. .|..+ |-+-+++|+.+.+|. +.+++||.-|+|.+. +. + +
T Consensus 20 ~eqa~iae~aga~avm~le~~p~d--~r~~g-gv~R~~~p~~I~~I~----~~V~iPVig~~kigh-----~~---E--a 82 (287)
T TIGR00343 20 PEQAKIAEEAGAVAVMALERVPAD--IRASG-GVARMSDPKMIKEIM----DAVSIPVMAKVRIGH-----FV---E--A 82 (287)
T ss_pred HHHHHHHHHcCceEEEeeccCchh--hHhcC-CeeecCCHHHHHHHH----HhCCCCEEEEeeccH-----HH---H--H
Confidence 356889999998877665455664 34444 667788888766554 556899999999874 11 1 3
Q ss_pred HHhhhCCccEEEEecCCcc-----------c-----------------------------CCCCcC--------------
Q 020423 220 KVSSLSPTRHFIIHSRKAL-----------L-----------------------------NGISPA-------------- 245 (326)
Q Consensus 220 ~~le~~Gvd~I~v~~~~~~-----------~-----------------------------~g~~~~-------------- 245 (326)
+.+++.|+|+|+-+.+... + .+.++.
T Consensus 83 ~~L~~~GvDiIDeTe~lrPade~~~~~K~~f~vpfmad~~~l~EAlrai~~GadmI~Tt~e~gTg~v~~av~hlr~~~~~ 162 (287)
T TIGR00343 83 QILEALGVDYIDESEVLTPADWTFHIDKKKFKVPFVCGARDLGEALRRINEGAAMIRTKGEAGTGNIVEAVRHMRKINEE 162 (287)
T ss_pred HHHHHcCCCEEEccCCCCcHHHHHHHHHHHcCCCEEccCCCHHHHHHHHHCCCCEEeccccCCCccHHHHHHHHHHHHHH
Confidence 3455667777654322100 0 001110
Q ss_pred --------Cc------CCCCCccHHHHHHHHhcCCCceEE--EeCCCCCHHHHHHHHHhCCChhhhhHHHHh--CCchhH
Q 020423 246 --------EN------RTIPPLKYEYYYALLRDFPDLTFT--LNGGINTVDEVNAALRKGAHHVMVGRAAYQ--NPWYTL 307 (326)
Q Consensus 246 --------~~------~~~~~~~~~~i~~i~~~~~~iPVI--a~GgI~s~~da~~~l~~GaD~V~iGRall~--dP~l~~ 307 (326)
+. .......++++.++.+.. ++||+ +.|||.|++++..+++.|||+|.+|+++.. ||....
T Consensus 163 ~~~~~~~~~~~~~~~~a~~~~~~~elLkei~~~~-~iPVV~fAiGGI~TPedAa~~melGAdGVaVGSaI~ks~dP~~~a 241 (287)
T TIGR00343 163 IRQIQNMLEEEDLAAVAKELRVPVELLLEVLKLG-KLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSSNPEKLA 241 (287)
T ss_pred HHHHhcccchhHHhhhhcccCCCHHHHHHHHHhC-CCCEEEeccCCCCCHHHHHHHHHcCCCEEEEhHHhhcCCCHHHHH
Confidence 00 000123578888887764 89998 999999999999999999999999999995 788777
Q ss_pred HhHHHhhhCCCCC
Q 020423 308 GHVDTAIYGAPSS 320 (326)
Q Consensus 308 ~~i~~~~~~~~~~ 320 (326)
+.+.+.+.+..+|
T Consensus 242 kafv~ai~~~~~~ 254 (287)
T TIGR00343 242 KAIVEATTHYDNP 254 (287)
T ss_pred HHHHHHHHHcCCH
Confidence 7777777666554
|
This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals. |
| >cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF) | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.2e-09 Score=99.11 Aligned_cols=131 Identities=14% Similarity=0.162 Sum_probs=90.3
Q ss_pred HHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHh-cCCCcEEEEecc---------CCCCCccHHHHHH
Q 020423 147 NAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAA-NTNVPVSVKCRI---------GVDDHDSYNQLCD 216 (326)
Q Consensus 147 ~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~-~~~~pv~vK~r~---------g~~~~~~~~e~~~ 216 (326)
.+.|+|.|.++. .+..+|+++.++++.+.+ .+-.++.+|.+. +|.+... .+..+
T Consensus 90 l~~G~~~v~ig~---------------~~~~~p~~~~~i~~~~~~~~i~~~ld~k~~~~~~~~v~~~~~~~~~~-~~~~~ 153 (243)
T cd04731 90 LRAGADKVSINS---------------AAVENPELIREIAKRFGSQCVVVSIDAKRRGDGGYEVYTHGGRKPTG-LDAVE 153 (243)
T ss_pred HHcCCceEEECc---------------hhhhChHHHHHHHHHcCCCCEEEEEEeeecCCCceEEEEcCCceecC-CCHHH
Confidence 346899988752 233578899999888743 344555555332 1222111 12223
Q ss_pred HHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHh-CCChhhh
Q 020423 217 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRK-GAHHVMV 295 (326)
Q Consensus 217 ~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~-GaD~V~i 295 (326)
+++.+++.|+|.|.+|+++.. |.. ...+++.+.++.+.. ++|||++|||++++++.++++. |||+|++
T Consensus 154 -~~~~l~~~G~d~i~v~~i~~~--g~~-------~g~~~~~i~~i~~~~-~~pvia~GGi~~~~di~~~l~~~g~dgv~v 222 (243)
T cd04731 154 -WAKEVEELGAGEILLTSMDRD--GTK-------KGYDLELIRAVSSAV-NIPVIASGGAGKPEHFVEAFEEGGADAALA 222 (243)
T ss_pred -HHHHHHHCCCCEEEEeccCCC--CCC-------CCCCHHHHHHHHhhC-CCCEEEeCCCCCHHHHHHHHHhCCCCEEEE
Confidence 345567899999999987641 211 123588888887664 9999999999999999999995 9999999
Q ss_pred hHHHHhCCc
Q 020423 296 GRAAYQNPW 304 (326)
Q Consensus 296 GRall~dP~ 304 (326)
||+++..-.
T Consensus 223 g~al~~~~~ 231 (243)
T cd04731 223 ASIFHFGEY 231 (243)
T ss_pred eHHHHcCCC
Confidence 999987543
|
Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria. |
| >PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=3.2e-09 Score=105.68 Aligned_cols=134 Identities=14% Similarity=0.146 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC-CCcEEEEeccCCCCCccHHHH
Q 020423 136 LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQL 214 (326)
Q Consensus 136 ~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~-~~pv~vK~r~g~~~~~~~~e~ 214 (326)
+++ .+.++.+.++|+|.|+|+... | +..+..+.++.+|+.. +.+|.++ +..+.++.
T Consensus 240 ~~~-~~~~~~l~~ag~d~i~id~a~-----------G-----~s~~~~~~i~~ik~~~~~~~v~aG------~V~t~~~a 296 (495)
T PTZ00314 240 PED-IERAAALIEAGVDVLVVDSSQ-----------G-----NSIYQIDMIKKLKSNYPHVDIIAG------NVVTADQA 296 (495)
T ss_pred HHH-HHHHHHHHHCCCCEEEEecCC-----------C-----CchHHHHHHHHHHhhCCCceEEEC------CcCCHHHH
Confidence 344 566777888999999998641 1 2334567888888875 5666663 22233332
Q ss_pred HHHHHHHhhhCCccEEEEecCCc---ccCCCCcCCcCCCCCccHHH---HHHHHhcCCCceEEEeCCCCCHHHHHHHHHh
Q 020423 215 CDFIYKVSSLSPTRHFIIHSRKA---LLNGISPAENRTIPPLKYEY---YYALLRDFPDLTFTLNGGINTVDEVNAALRK 288 (326)
Q Consensus 215 ~~~ia~~le~~Gvd~I~v~~~~~---~~~g~~~~~~~~~~~~~~~~---i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~ 288 (326)
+.+.++|+|+|.|..+.. ......+ ...|. +.. +.+..++. ++|||+.|||.++.|+.++++.
T Consensus 297 -----~~~~~aGad~I~vg~g~Gs~~~t~~~~~---~g~p~--~~ai~~~~~~~~~~-~v~vIadGGi~~~~di~kAla~ 365 (495)
T PTZ00314 297 -----KNLIDAGADGLRIGMGSGSICITQEVCA---VGRPQ--ASAVYHVARYARER-GVPCIADGGIKNSGDICKALAL 365 (495)
T ss_pred -----HHHHHcCCCEEEECCcCCcccccchhcc---CCCCh--HHHHHHHHHHHhhc-CCeEEecCCCCCHHHHHHHHHc
Confidence 234469999998742211 0000000 01122 333 33344444 7999999999999999999999
Q ss_pred CCChhhhhHHHHhCC
Q 020423 289 GAHHVMVGRAAYQNP 303 (326)
Q Consensus 289 GaD~V~iGRall~dP 303 (326)
|||+||+|+++...-
T Consensus 366 GA~~Vm~G~~~a~~~ 380 (495)
T PTZ00314 366 GADCVMLGSLLAGTE 380 (495)
T ss_pred CCCEEEECchhcccc
Confidence 999999999986643
|
|
| >PLN02274 inosine-5'-monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.11 E-value=8.9e-09 Score=102.65 Aligned_cols=134 Identities=14% Similarity=0.109 Sum_probs=85.0
Q ss_pred HHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC-CCcEEEEeccCCCCCccHHHHHHHH
Q 020423 140 AKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFI 218 (326)
Q Consensus 140 ~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~-~~pv~vK~r~g~~~~~~~~e~~~~i 218 (326)
.+-++.+.++|+|.|-+.+. + | ....+.+.++.+|+.. +.++.++ +..+.++
T Consensus 250 ~~r~~~l~~ag~d~i~iD~~--~---------g-----~~~~~~~~i~~ik~~~p~~~vi~g------~v~t~e~----- 302 (505)
T PLN02274 250 KERLEHLVKAGVDVVVLDSS--Q---------G-----DSIYQLEMIKYIKKTYPELDVIGG------NVVTMYQ----- 302 (505)
T ss_pred HHHHHHHHHcCCCEEEEeCC--C---------C-----CcHHHHHHHHHHHHhCCCCcEEEe------cCCCHHH-----
Confidence 34555566678888777542 1 1 2445567788888766 4666554 1223433
Q ss_pred HHHhhhCCccEEEEecCCcccC---CCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhh
Q 020423 219 YKVSSLSPTRHFIIHSRKALLN---GISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMV 295 (326)
Q Consensus 219 a~~le~~Gvd~I~v~~~~~~~~---g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~i 295 (326)
++.+.++|+|.|.|..+..... ...+...+ ....+..+.++.++. ++|||+-|||.++.|+.+++..|||+||+
T Consensus 303 a~~a~~aGaD~i~vg~g~G~~~~t~~~~~~g~~--~~~~i~~~~~~~~~~-~vpVIadGGI~~~~di~kAla~GA~~V~v 379 (505)
T PLN02274 303 AQNLIQAGVDGLRVGMGSGSICTTQEVCAVGRG--QATAVYKVASIAAQH-GVPVIADGGISNSGHIVKALTLGASTVMM 379 (505)
T ss_pred HHHHHHcCcCEEEECCCCCccccCccccccCCC--cccHHHHHHHHHHhc-CCeEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 2334569999998853221100 00000000 112345566776664 89999999999999999999999999999
Q ss_pred hHHHHhCC
Q 020423 296 GRAAYQNP 303 (326)
Q Consensus 296 GRall~dP 303 (326)
|+++....
T Consensus 380 Gs~~~~t~ 387 (505)
T PLN02274 380 GSFLAGTT 387 (505)
T ss_pred chhhcccc
Confidence 99998643
|
|
| >PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.8e-09 Score=96.61 Aligned_cols=139 Identities=19% Similarity=0.265 Sum_probs=92.7
Q ss_pred HHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHh-cCCCcEEEE---ec-cCCCCCc--cHHHHHH
Q 020423 144 ELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAA-NTNVPVSVK---CR-IGVDDHD--SYNQLCD 216 (326)
Q Consensus 144 ~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~-~~~~pv~vK---~r-~g~~~~~--~~~e~~~ 216 (326)
+.+.++|+|.|-+ |+.++++++++.++.+.+.. .+-..+.+| +. .||.+.. +..+
T Consensus 92 ~~~~~~Ga~~v~i---------------Gs~~~~~~~~~~~i~~~~g~~~i~~sid~~~~~v~~~g~~~~~~~~~~~--- 153 (241)
T PRK13585 92 ASLLDLGVDRVIL---------------GTAAVENPEIVRELSEEFGSERVMVSLDAKDGEVVIKGWTEKTGYTPVE--- 153 (241)
T ss_pred HHHHHcCCCEEEE---------------ChHHhhChHHHHHHHHHhCCCcEEEEEEeeCCEEEECCCcccCCCCHHH---
Confidence 4444689999866 33334678888888777522 111112221 11 2444322 2333
Q ss_pred HHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhh
Q 020423 217 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVG 296 (326)
Q Consensus 217 ~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iG 296 (326)
+++.+++.|++.|++|+.+. .|. ....+++.++++.+.. ++||+++|||++++++.++++.||++|++|
T Consensus 154 -~~~~~~~~G~~~i~~~~~~~--~g~-------~~g~~~~~i~~i~~~~-~iPvia~GGI~~~~di~~~~~~Ga~gv~vg 222 (241)
T PRK13585 154 -AAKRFEELGAGSILFTNVDV--EGL-------LEGVNTEPVKELVDSV-DIPVIASGGVTTLDDLRALKEAGAAGVVVG 222 (241)
T ss_pred -HHHHHHHcCCCEEEEEeecC--CCC-------cCCCCHHHHHHHHHhC-CCCEEEeCCCCCHHHHHHHHHcCCCEEEEE
Confidence 23455679999999998653 111 1224588888888765 899999999999999999888999999999
Q ss_pred HHHHhCCchhHHhHHH
Q 020423 297 RAAYQNPWYTLGHVDT 312 (326)
Q Consensus 297 Rall~dP~l~~~~i~~ 312 (326)
++++.+|.. ..+...
T Consensus 223 sa~~~~~~~-~~~~~~ 237 (241)
T PRK13585 223 SALYKGKFT-LEEAIE 237 (241)
T ss_pred HHHhcCCcC-HHHHHH
Confidence 999999994 444433
|
|
| >PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=2e-09 Score=98.69 Aligned_cols=140 Identities=16% Similarity=0.272 Sum_probs=98.4
Q ss_pred EEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccC----
Q 020423 129 LQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIG---- 204 (326)
Q Consensus 129 vQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g---- 204 (326)
+|+.| ....+.+ ++.+.++|++.|.++. .+..+++++.++++...+. .+.++++++.+
T Consensus 77 v~~gG-Gi~s~~d-~~~l~~~G~~~vvigs---------------~~~~~~~~~~~~~~~~~~~-~i~vsiD~k~g~~~~ 138 (258)
T PRK01033 77 LCYGG-GIKTLEQ-AKKIFSLGVEKVSINT---------------AALEDPDLITEAAERFGSQ-SVVVSIDVKKNLGGK 138 (258)
T ss_pred EEECC-CCCCHHH-HHHHHHCCCCEEEECh---------------HHhcCHHHHHHHHHHhCCC-cEEEEEEEecCCCCc
Confidence 46654 3333444 3344477999999862 2336789999998887422 25666666654
Q ss_pred -------CCCC--ccHHHHHHHHHHHhhhCCccEEEEecCCc--ccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEe
Q 020423 205 -------VDDH--DSYNQLCDFIYKVSSLSPTRHFIIHSRKA--LLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLN 273 (326)
Q Consensus 205 -------~~~~--~~~~e~~~~ia~~le~~Gvd~I~v~~~~~--~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~ 273 (326)
|.+. ....+ +++.+++.|++.+.+|+++. .+.| .+|+.+.++.+. +++|||++
T Consensus 139 ~~v~~~gw~~~~~~~~~e----~~~~~~~~g~~~ii~~~i~~~G~~~G-----------~d~~~i~~~~~~-~~ipvIas 202 (258)
T PRK01033 139 FDVYTHNGTKKLKKDPLE----LAKEYEALGAGEILLNSIDRDGTMKG-----------YDLELLKSFRNA-LKIPLIAL 202 (258)
T ss_pred EEEEEcCCeecCCCCHHH----HHHHHHHcCCCEEEEEccCCCCCcCC-----------CCHHHHHHHHhh-CCCCEEEe
Confidence 2111 12222 34456789999999997764 2222 258888888766 59999999
Q ss_pred CCCCCHHHHHHHH-HhCCChhhhhHHHHhC
Q 020423 274 GGINTVDEVNAAL-RKGAHHVMVGRAAYQN 302 (326)
Q Consensus 274 GgI~s~~da~~~l-~~GaD~V~iGRall~d 302 (326)
|||.+.+|+.+++ +.|+|+|.+|+++...
T Consensus 203 GGv~s~eD~~~l~~~~GvdgVivg~a~~~~ 232 (258)
T PRK01033 203 GGAGSLDDIVEAILNLGADAAAAGSLFVFK 232 (258)
T ss_pred CCCCCHHHHHHHHHHCCCCEEEEcceeeeC
Confidence 9999999999999 5999999999999876
|
|
| >cd04732 HisA HisA | Back alignment and domain information |
|---|
Probab=99.07 E-value=1e-09 Score=98.91 Aligned_cols=132 Identities=19% Similarity=0.255 Sum_probs=89.8
Q ss_pred HHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHh-cCCCcEEEEe----ccCCCC--CccHHHHHH
Q 020423 144 ELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAA-NTNVPVSVKC----RIGVDD--HDSYNQLCD 216 (326)
Q Consensus 144 ~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~-~~~~pv~vK~----r~g~~~--~~~~~e~~~ 216 (326)
+.+.++|+|.|-+ |..+..+++++.++.+.+.+ .+-.++.+|. ..+|.+ ..+..+
T Consensus 89 ~~~~~~Gad~vvi---------------gs~~l~dp~~~~~i~~~~g~~~i~~sid~~~~~~~~~~~~~~~~~~~~~--- 150 (234)
T cd04732 89 ERLLDLGVSRVII---------------GTAAVKNPELVKELLKEYGGERIVVGLDAKDGKVATKGWLETSEVSLEE--- 150 (234)
T ss_pred HHHHHcCCCEEEE---------------CchHHhChHHHHHHHHHcCCceEEEEEEeeCCEEEECCCeeecCCCHHH---
Confidence 4444689999865 33344678888888887643 2212232221 123321 112323
Q ss_pred HHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhh
Q 020423 217 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVG 296 (326)
Q Consensus 217 ~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iG 296 (326)
+.+.+++.|++.+++++.+.. |.. ...+++.+.++.+.. ++||+++|||.+.+++.++++.|||+|++|
T Consensus 151 -~~~~~~~~ga~~iii~~~~~~--g~~-------~g~~~~~i~~i~~~~-~ipvi~~GGi~~~~di~~~~~~Ga~gv~vg 219 (234)
T cd04732 151 -LAKRFEELGVKAIIYTDISRD--GTL-------SGPNFELYKELAAAT-GIPVIASGGVSSLDDIKALKELGVAGVIVG 219 (234)
T ss_pred -HHHHHHHcCCCEEEEEeecCC--Ccc-------CCCCHHHHHHHHHhc-CCCEEEecCCCCHHHHHHHHHCCCCEEEEe
Confidence 244567899999999976531 110 113588888887664 899999999999999999999999999999
Q ss_pred HHHHhCCc
Q 020423 297 RAAYQNPW 304 (326)
Q Consensus 297 Rall~dP~ 304 (326)
|+++.++.
T Consensus 220 ~~~~~~~~ 227 (234)
T cd04732 220 KALYEGKI 227 (234)
T ss_pred HHHHcCCC
Confidence 99999985
|
Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. |
| >PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated | Back alignment and domain information |
|---|
Probab=99.04 E-value=2.2e-09 Score=96.75 Aligned_cols=130 Identities=18% Similarity=0.218 Sum_probs=89.7
Q ss_pred HHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEec----cCCCCC--ccHHHHHHH
Q 020423 144 ELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCR----IGVDDH--DSYNQLCDF 217 (326)
Q Consensus 144 ~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r----~g~~~~--~~~~e~~~~ 217 (326)
+++.+.|+|.|-+ |..+..+++++.++.+.+.+.+-+++.+|-. .+|.+. .+..+
T Consensus 90 ~~~~~~Ga~~vil---------------g~~~l~~~~~l~ei~~~~~~~i~vsid~k~~~v~~~g~~~~~~~~~~e---- 150 (233)
T PRK00748 90 EALLDAGVSRVII---------------GTAAVKNPELVKEACKKFPGKIVVGLDARDGKVATDGWLETSGVTAED---- 150 (233)
T ss_pred HHHHHcCCCEEEE---------------CchHHhCHHHHHHHHHHhCCCceeeeeccCCEEEEccCeecCCCCHHH----
Confidence 4455578888754 4445567888999988875544334444311 234221 12333
Q ss_pred HHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhC-CChhhhh
Q 020423 218 IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKG-AHHVMVG 296 (326)
Q Consensus 218 ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~G-aD~V~iG 296 (326)
+.+.+++.|++.+.+|+.+.. |. . ...+|+.+.++.+.. ++|||++|||.+.+|+.++++.| ||+|++|
T Consensus 151 ~~~~~~~~g~~~ii~~~~~~~--g~------~-~G~d~~~i~~l~~~~-~ipvia~GGi~~~~di~~~~~~g~~~gv~vg 220 (233)
T PRK00748 151 LAKRFEDAGVKAIIYTDISRD--GT------L-SGPNVEATRELAAAV-PIPVIASGGVSSLDDIKALKGLGAVEGVIVG 220 (233)
T ss_pred HHHHHHhcCCCEEEEeeecCc--CC------c-CCCCHHHHHHHHHhC-CCCEEEeCCCCCHHHHHHHHHcCCccEEEEE
Confidence 344567899999999976642 11 0 113588888888764 79999999999999999999977 9999999
Q ss_pred HHHHhC
Q 020423 297 RAAYQN 302 (326)
Q Consensus 297 Rall~d 302 (326)
|+++..
T Consensus 221 ~a~~~~ 226 (233)
T PRK00748 221 RALYEG 226 (233)
T ss_pred HHHHcC
Confidence 999865
|
|
| >TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase | Back alignment and domain information |
|---|
Probab=99.04 E-value=4.1e-09 Score=94.85 Aligned_cols=131 Identities=20% Similarity=0.284 Sum_probs=90.2
Q ss_pred HHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHH-hcCCCcEEEEec------cCCCCCccHHHHH
Q 020423 143 TELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA-ANTNVPVSVKCR------IGVDDHDSYNQLC 215 (326)
Q Consensus 143 A~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr-~~~~~pv~vK~r------~g~~~~~~~~e~~ 215 (326)
++.+.++|+|.|-+ |..++.+++.+.++.+++. +. +.++++++ .+|.+... .+..
T Consensus 87 ~~~~~~~Ga~~vvl---------------gs~~l~d~~~~~~~~~~~g~~~--i~~sid~~~~~v~~~g~~~~~~-~~~~ 148 (230)
T TIGR00007 87 VEKLLDLGVDRVII---------------GTAAVENPDLVKELLKEYGPER--IVVSLDARGGEVAVKGWLEKSE-VSLE 148 (230)
T ss_pred HHHHHHcCCCEEEE---------------ChHHhhCHHHHHHHHHHhCCCc--EEEEEEEECCEEEEcCCcccCC-CCHH
Confidence 35566689999855 3334456888888888874 32 23444444 23433211 1112
Q ss_pred HHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhh
Q 020423 216 DFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMV 295 (326)
Q Consensus 216 ~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~i 295 (326)
+ +++.+++.|++.++++..+.. |.. ...+++.+.++.+. +++||+++|||.+.+|+.++++.|||+|++
T Consensus 149 ~-~~~~~~~~g~~~ii~~~~~~~--g~~-------~g~~~~~i~~i~~~-~~ipvia~GGi~~~~di~~~~~~Gadgv~i 217 (230)
T TIGR00007 149 E-LAKRLEELGLEGIIYTDISRD--GTL-------SGPNFELTKELVKA-VNVPVIASGGVSSIDDLIALKKLGVYGVIV 217 (230)
T ss_pred H-HHHHHHhCCCCEEEEEeecCC--CCc-------CCCCHHHHHHHHHh-CCCCEEEeCCCCCHHHHHHHHHCCCCEEEE
Confidence 2 334556799999999977642 111 11358888888776 589999999999999999999999999999
Q ss_pred hHHHHhC
Q 020423 296 GRAAYQN 302 (326)
Q Consensus 296 GRall~d 302 (326)
||+++.+
T Consensus 218 g~a~~~~ 224 (230)
T TIGR00007 218 GKALYEG 224 (230)
T ss_pred eHHHHcC
Confidence 9999876
|
Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317). |
| >TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ | Back alignment and domain information |
|---|
Probab=99.03 E-value=4.6e-09 Score=94.76 Aligned_cols=144 Identities=16% Similarity=0.239 Sum_probs=94.6
Q ss_pred CCcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEecc
Q 020423 124 QHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRI 203 (326)
Q Consensus 124 ~~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~ 203 (326)
+.|+ |+. .++..+.++.+ +.+.|++.|.++ ..+..+++++.++.+...+. .++++++++.
T Consensus 74 ~~pv--~~~-ggi~~~~d~~~-~~~~G~~~vilg---------------~~~l~~~~~~~~~~~~~~~~-~i~vsld~~~ 133 (232)
T TIGR03572 74 FMPL--TVG-GGIRSLEDAKK-LLSLGADKVSIN---------------TAALENPDLIEEAARRFGSQ-CVVVSIDVKK 133 (232)
T ss_pred CCCE--EEE-CCCCCHHHHHH-HHHcCCCEEEEC---------------hhHhcCHHHHHHHHHHcCCc-eEEEEEEecc
Confidence 4454 443 34444444444 556799999875 23346788888888776332 1456666655
Q ss_pred C------------CCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEE
Q 020423 204 G------------VDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFT 271 (326)
Q Consensus 204 g------------~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVI 271 (326)
+ |.+.. ..+..+ +++.+++.|+|.+++|+.+.. |. ....+++.+.++.+.. ++||+
T Consensus 134 ~~~~~~~~v~~~~~~~~~-~~~~~~-~~~~~~~~G~d~i~i~~i~~~--g~-------~~g~~~~~~~~i~~~~-~ipvi 201 (232)
T TIGR03572 134 ELDGSDYKVYSDNGRRAT-GRDPVE-WAREAEQLGAGEILLNSIDRD--GT-------MKGYDLELIKTVSDAV-SIPVI 201 (232)
T ss_pred CCCCCcEEEEECCCcccC-CCCHHH-HHHHHHHcCCCEEEEeCCCcc--CC-------cCCCCHHHHHHHHhhC-CCCEE
Confidence 3 11111 112233 345667899999999986541 11 0123588888887764 89999
Q ss_pred EeCCCCCHHHHHH-HHHhCCChhhhhHHH
Q 020423 272 LNGGINTVDEVNA-ALRKGAHHVMVGRAA 299 (326)
Q Consensus 272 a~GgI~s~~da~~-~l~~GaD~V~iGRal 299 (326)
++|||++++++.+ +.+.|||+|++|+++
T Consensus 202 a~GGi~s~~di~~~l~~~gadgV~vg~a~ 230 (232)
T TIGR03572 202 ALGGAGSLDDLVEVALEAGASAVAAASLF 230 (232)
T ss_pred EECCCCCHHHHHHHHHHcCCCEEEEehhh
Confidence 9999999999999 545899999999997
|
This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr |
| >TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.02 E-value=4.2e-08 Score=96.93 Aligned_cols=132 Identities=14% Similarity=0.150 Sum_probs=86.5
Q ss_pred HHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC-CCcEEEEeccCCCCCccHHHHHHHH
Q 020423 140 AKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFI 218 (326)
Q Consensus 140 ~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~-~~pv~vK~r~g~~~~~~~~e~~~~i 218 (326)
.+-++.+.++|+|.|+|..... +.+.+.+.++.+|+.. +.||.++ +..+.++.
T Consensus 226 ~~r~~~L~~aG~d~I~vd~a~g----------------~~~~~~~~i~~i~~~~~~~~vi~G------~v~t~~~a---- 279 (450)
T TIGR01302 226 KERAEALVKAGVDVIVIDSSHG----------------HSIYVIDSIKEIKKTYPDLDIIAG------NVATAEQA---- 279 (450)
T ss_pred HHHHHHHHHhCCCEEEEECCCC----------------cHhHHHHHHHHHHHhCCCCCEEEE------eCCCHHHH----
Confidence 3445567788999999976432 1245778889998874 7888884 12233332
Q ss_pred HHHhhhCCccEEEEecCCc---ccCCCCcCCcCCCCCccHHHHHHH---HhcCCCceEEEeCCCCCHHHHHHHHHhCCCh
Q 020423 219 YKVSSLSPTRHFIIHSRKA---LLNGISPAENRTIPPLKYEYYYAL---LRDFPDLTFTLNGGINTVDEVNAALRKGAHH 292 (326)
Q Consensus 219 a~~le~~Gvd~I~v~~~~~---~~~g~~~~~~~~~~~~~~~~i~~i---~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~ 292 (326)
+.+.++|+|+|.|.-+.. ......+ ...| ....+.++ .++. ++|||+.|||+++.|+.++++.|||.
T Consensus 280 -~~l~~aGad~i~vg~g~G~~~~t~~~~~---~g~p--~~~~i~~~~~~~~~~-~vpviadGGi~~~~di~kAla~GA~~ 352 (450)
T TIGR01302 280 -KALIDAGADGLRVGIGPGSICTTRIVAG---VGVP--QITAVYDVAEYAAQS-GIPVIADGGIRYSGDIVKALAAGADA 352 (450)
T ss_pred -HHHHHhCCCEEEECCCCCcCCccceecC---CCcc--HHHHHHHHHHHHhhc-CCeEEEeCCCCCHHHHHHHHHcCCCE
Confidence 234469999998752111 0000000 0111 23444433 3333 89999999999999999999999999
Q ss_pred hhhhHHHHhCCc
Q 020423 293 VMVGRAAYQNPW 304 (326)
Q Consensus 293 V~iGRall~dP~ 304 (326)
||+|+.+....+
T Consensus 353 V~~G~~~a~~~e 364 (450)
T TIGR01302 353 VMLGSLLAGTTE 364 (450)
T ss_pred EEECchhhcCCc
Confidence 999999876654
|
This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models. |
| >PRK00208 thiG thiazole synthase; Reviewed | Back alignment and domain information |
|---|
Probab=98.98 E-value=4.7e-08 Score=87.48 Aligned_cols=217 Identities=14% Similarity=0.136 Sum_probs=125.6
Q ss_pred cccccCeecCCcEEEccCCCCChHHH-HHHHHHcCCCcEEEecceeeccccccccchhhhhh-cCCCCCcEEEEec-CCC
Q 020423 59 AEMVARQYLPPWFSVAPMMDWTDNHY-RTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLA-FSPEQHPIVLQIG-GSN 135 (326)
Q Consensus 59 p~~ig~~~l~nrivlAPM~~~s~~~~-r~~~~~~Gg~gli~te~~~~~~~~~~~~~~~~~~~-~~~~~~piivQL~-g~~ 135 (326)
+++||+.+++.|+++. -..+.+... +...++.| +.++..-.=..+ ... ..+.+++ +...+..+..|-. +.+
T Consensus 1 ~l~i~~~~~~SRl~~G-tgky~s~~~~~~ai~asg-~~ivTvalrR~~-~~~---~~~~~~~~i~~~~~~~lpNTaG~~t 74 (250)
T PRK00208 1 MLTIAGKTFSSRLLLG-TGKYPSPQVMQEAIEASG-AEIVTVALRRVN-LGQ---GGDNLLDLLPPLGVTLLPNTAGCRT 74 (250)
T ss_pred CcEECCEEeeccceEe-cCCCCCHHHHHHHHHHhC-CCeEEEEEEeec-CCC---CcchHHhhccccCCEECCCCCCCCC
Confidence 4789999999999883 334655544 44455544 555433321111 111 1123332 2223444445543 467
Q ss_pred HHHHHHHHHHHHHCC-CCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHH
Q 020423 136 LDNLAKATELANAYN-YDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQL 214 (326)
Q Consensus 136 ~~~f~~aA~~a~~aG-~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~ 214 (326)
.++-.+.|+.++|++ -++|-|-. ...+.| ++.++....+-.+.+.+. |+-+..=+. + ++.
T Consensus 75 a~eAv~~a~lare~~~~~~iKlEV-------i~d~~~---llpd~~~tv~aa~~L~~~-Gf~vlpyc~---~---d~~-- 135 (250)
T PRK00208 75 AEEAVRTARLAREALGTNWIKLEV-------IGDDKT---LLPDPIETLKAAEILVKE-GFVVLPYCT---D---DPV-- 135 (250)
T ss_pred HHHHHHHHHHHHHHhCCCeEEEEE-------ecCCCC---CCcCHHHHHHHHHHHHHC-CCEEEEEeC---C---CHH--
Confidence 899999999999974 47776642 111111 123343333333332111 333321111 1 222
Q ss_pred HHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhh
Q 020423 215 CDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVM 294 (326)
Q Consensus 215 ~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~ 294 (326)
.++.+++.|+++|-..+..- |. + ....+.+.++.+++. .++|||+.|||.+++|+.++++.|||+|.
T Consensus 136 ---~ak~l~~~G~~~vmPlg~pI---Gs-g-----~gi~~~~~i~~i~e~-~~vpVIveaGI~tpeda~~AmelGAdgVl 202 (250)
T PRK00208 136 ---LAKRLEEAGCAAVMPLGAPI---GS-G-----LGLLNPYNLRIIIEQ-ADVPVIVDAGIGTPSDAAQAMELGADAVL 202 (250)
T ss_pred ---HHHHHHHcCCCEeCCCCcCC---CC-C-----CCCCCHHHHHHHHHh-cCCeEEEeCCCCCHHHHHHHHHcCCCEEE
Confidence 24566788999994332211 10 0 112236667777766 58999999999999999999999999999
Q ss_pred hhHHHHh--CCchhHHhHHHh
Q 020423 295 VGRAAYQ--NPWYTLGHVDTA 313 (326)
Q Consensus 295 iGRall~--dP~l~~~~i~~~ 313 (326)
+|+++.. ||....+.+...
T Consensus 203 V~SAItka~dP~~ma~af~~A 223 (250)
T PRK00208 203 LNTAIAVAGDPVAMARAFKLA 223 (250)
T ss_pred EChHhhCCCCHHHHHHHHHHH
Confidence 9999986 577666655544
|
|
| >cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa | Back alignment and domain information |
|---|
Probab=98.98 E-value=8.4e-09 Score=93.82 Aligned_cols=67 Identities=21% Similarity=0.251 Sum_probs=57.1
Q ss_pred ccHHHHHHHHhcCCCceEE--EeCCCCCHHHHHHHHHhCCChhhhhHHHHh--CCchhHHhHHHhhhCCCCC
Q 020423 253 LKYEYYYALLRDFPDLTFT--LNGGINTVDEVNAALRKGAHHVMVGRAAYQ--NPWYTLGHVDTAIYGAPSS 320 (326)
Q Consensus 253 ~~~~~i~~i~~~~~~iPVI--a~GgI~s~~da~~~l~~GaD~V~iGRall~--dP~l~~~~i~~~~~~~~~~ 320 (326)
..|+.++++.+.. ++||+ +.|||.+++++.++++.|||+|++|++++. ||....+++.+.+....+|
T Consensus 181 ~d~elLk~l~~~~-~iPVV~iAeGGI~Tpena~~v~e~GAdgVaVGSAI~~a~dP~~~tk~f~~ai~~~~~~ 251 (283)
T cd04727 181 APYELVKETAKLG-RLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSENPEKRARAIVEAVTHYDDP 251 (283)
T ss_pred CCHHHHHHHHHhc-CCCeEEEEeCCCCCHHHHHHHHHcCCCEEEEcHHhhcCCCHHHHHHHHHHHHHhcCCH
Confidence 4688898888765 89997 999999999999999999999999999995 7777777777777666554
|
Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings. |
| >TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.2e-07 Score=88.65 Aligned_cols=210 Identities=13% Similarity=0.039 Sum_probs=130.2
Q ss_pred cCCccccccCeecCCcEEEccCCCCChHHHHHHHHHcCCCcEEEecceeeccccccccchhhhhh-cCC-CCCcEEEEec
Q 020423 55 LHTKAEMVARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLA-FSP-EQHPIVLQIG 132 (326)
Q Consensus 55 ~l~~p~~ig~~~l~nrivlAPM~~~s~~~~r~~~~~~Gg~gli~te~~~~~~~~~~~~~~~~~~~-~~~-~~~piivQL~ 132 (326)
..|.+..-+++.++-|++-|.|.++++.+++......|+.+.+-=- .. .+....+.+ ..+ ....+.+.+
T Consensus 32 ~~~~~~~~~~~~~~iPii~AnMdtv~~~~mA~~la~~g~~~~iHk~-~~-------~e~~~~~v~~~~~~~~~~~~vsv- 102 (343)
T TIGR01305 32 RTFTFRNSKQTYSGVPIIAANMDTVGTFEMAAALSQHSIFTAIHKH-YS-------VDEWKAFATNSSPDCLQNVAVSS- 102 (343)
T ss_pred EEEccccCCceeeCCceEecCCCcccCHHHHHHHHHCCCeEEEeeC-CC-------HHHHHHHHHhhcccccceEEEEe-
Confidence 3344444557788889999999999999999887777876543111 11 111122221 121 223344443
Q ss_pred CCCHHHHHHHHHHHHH-CCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccH
Q 020423 133 GSNLDNLAKATELANA-YNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSY 211 (326)
Q Consensus 133 g~~~~~f~~aA~~a~~-aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~ 211 (326)
|..++++.++...++. .|.|.|-|..+. + ..+.+.+.++.+|+..+.+..++=.. .+.
T Consensus 103 G~~~~d~er~~~L~~a~~~~d~iviD~Ah--------G--------hs~~~i~~ik~ir~~~p~~~viaGNV-----~T~ 161 (343)
T TIGR01305 103 GSSDNDLEKMTSILEAVPQLKFICLDVAN--------G--------YSEHFVEFVKLVREAFPEHTIMAGNV-----VTG 161 (343)
T ss_pred ccCHHHHHHHHHHHhcCCCCCEEEEECCC--------C--------cHHHHHHHHHHHHhhCCCCeEEEecc-----cCH
Confidence 5677888887776665 368999886431 1 36678899999999885555555222 233
Q ss_pred HHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcC--CCceEEEeCCCCCHHHHHHHHHhC
Q 020423 212 NQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF--PDLTFTLNGGINTVDEVNAALRKG 289 (326)
Q Consensus 212 ~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~--~~iPVIa~GgI~s~~da~~~l~~G 289 (326)
++. +.+.++|+|.|.|.-+.....+. ......+-..+..+.++.+.. .++|||+-|||.+.-|+.+++..|
T Consensus 162 e~a-----~~Li~aGAD~ikVgiGpGSictt--R~~~Gvg~pqltAv~~~a~aa~~~~v~VIaDGGIr~~gDI~KALA~G 234 (343)
T TIGR01305 162 EMV-----EELILSGADIVKVGIGPGSVCTT--RTKTGVGYPQLSAVIECADAAHGLKGHIISDGGCTCPGDVAKAFGAG 234 (343)
T ss_pred HHH-----HHHHHcCCCEEEEcccCCCcccC--ceeCCCCcCHHHHHHHHHHHhccCCCeEEEcCCcCchhHHHHHHHcC
Confidence 332 23446999999887221100000 000011111255555554432 279999999999999999999999
Q ss_pred CChhhhhHHHHh
Q 020423 290 AHHVMVGRAAYQ 301 (326)
Q Consensus 290 aD~V~iGRall~ 301 (326)
||+||+|..+-.
T Consensus 235 Ad~VMlG~llAG 246 (343)
T TIGR01305 235 ADFVMLGGMFAG 246 (343)
T ss_pred CCEEEECHhhhC
Confidence 999999955543
|
A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences. |
| >cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism | Back alignment and domain information |
|---|
Probab=98.96 E-value=7.7e-08 Score=86.04 Aligned_cols=217 Identities=14% Similarity=0.140 Sum_probs=126.1
Q ss_pred ccccCeecCCcEEEccCCCCChHH-HHHHHHHcCCCcEEEecceeeccccccccchhhhhh-cCCCCCcEEEEec-CCCH
Q 020423 60 EMVARQYLPPWFSVAPMMDWTDNH-YRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLA-FSPEQHPIVLQIG-GSNL 136 (326)
Q Consensus 60 ~~ig~~~l~nrivlAPM~~~s~~~-~r~~~~~~Gg~gli~te~~~~~~~~~~~~~~~~~~~-~~~~~~piivQL~-g~~~ 136 (326)
++|++.+++.|+++. -..+.+.. .....++.| +.++..-.=..+ .. ....+.+++ +...+..+..|-. +.+.
T Consensus 1 ~~i~~~~~~SRl~~G-tgky~s~~~~~~ai~aSg-~~ivTva~rR~~-~~--~~~~~~~~~~i~~~~~~~lpNTaG~~ta 75 (248)
T cd04728 1 LTIGGKTFSSRLLLG-TGKYPSPAIMKEAIEASG-AEIVTVALRRVN-IG--DPGGESFLDLLDKSGYTLLPNTAGCRTA 75 (248)
T ss_pred CeECCEEeecceEEe-cCCCCCHHHHHHHHHHhC-CCEEEEEEEecc-cC--CCCcchHHhhccccCCEECCCCCCCCCH
Confidence 478999999999883 33454444 444455544 555433322211 10 111223332 2223334444543 3678
Q ss_pred HHHHHHHHHHHHCC-CCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHH
Q 020423 137 DNLAKATELANAYN-YDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLC 215 (326)
Q Consensus 137 ~~f~~aA~~a~~aG-~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~ 215 (326)
++-.+.|+.++|++ -|+|-|-. ...+. .|+.++....+-.+.+.+. |+-+..=+. + +..
T Consensus 76 ~eAv~~a~lare~~~~~~iKlEV-------i~d~~---~Llpd~~~tv~aa~~L~~~-Gf~vlpyc~---d---d~~--- 135 (248)
T cd04728 76 EEAVRTARLAREALGTDWIKLEV-------IGDDK---TLLPDPIETLKAAEILVKE-GFTVLPYCT---D---DPV--- 135 (248)
T ss_pred HHHHHHHHHHHHHhCCCeEEEEE-------ecCcc---ccccCHHHHHHHHHHHHHC-CCEEEEEeC---C---CHH---
Confidence 99999999999974 57776642 11111 1334444433333333211 333321111 1 221
Q ss_pred HHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhh
Q 020423 216 DFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMV 295 (326)
Q Consensus 216 ~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~i 295 (326)
.++.+++.|++.+-..+..- |. + ....+.+.++.+++. .++|||+.|||.+++|+.++++.|||+|.+
T Consensus 136 --~ar~l~~~G~~~vmPlg~pI---Gs-g-----~Gi~~~~~I~~I~e~-~~vpVI~egGI~tpeda~~AmelGAdgVlV 203 (248)
T cd04728 136 --LAKRLEDAGCAAVMPLGSPI---GS-G-----QGLLNPYNLRIIIER-ADVPVIVDAGIGTPSDAAQAMELGADAVLL 203 (248)
T ss_pred --HHHHHHHcCCCEeCCCCcCC---CC-C-----CCCCCHHHHHHHHHh-CCCcEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 25566789999994433221 10 0 122246777777766 589999999999999999999999999999
Q ss_pred hHHHHh--CCchhHHhHHHh
Q 020423 296 GRAAYQ--NPWYTLGHVDTA 313 (326)
Q Consensus 296 GRall~--dP~l~~~~i~~~ 313 (326)
|+++.. ||....+.+...
T Consensus 204 ~SAIt~a~dP~~ma~af~~A 223 (248)
T cd04728 204 NTAIAKAKDPVAMARAFKLA 223 (248)
T ss_pred ChHhcCCCCHHHHHHHHHHH
Confidence 999986 577766655544
|
ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH). |
| >PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=8.9e-09 Score=94.15 Aligned_cols=124 Identities=15% Similarity=0.167 Sum_probs=88.5
Q ss_pred HCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHH-h----cCC-------CcEEEEeccCCCCCc-cHHHH
Q 020423 148 AYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA-A----NTN-------VPVSVKCRIGVDDHD-SYNQL 214 (326)
Q Consensus 148 ~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr-~----~~~-------~pv~vK~r~g~~~~~-~~~e~ 214 (326)
+.|++.|.++ ..+..+|+++.++.+.+- + .++ .|+.||+|.+++... +..+.
T Consensus 94 ~~Ga~~Viig---------------t~~l~~p~~~~ei~~~~g~~~iv~slD~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 158 (253)
T PRK02083 94 RAGADKVSIN---------------SAAVANPELISEAADRFGSQCIVVAIDAKRDPEPGRWEVYTHGGRKPTGLDAVEW 158 (253)
T ss_pred HcCCCEEEEC---------------hhHhhCcHHHHHHHHHcCCCCEEEEEEeccCCCCCCEEEEEcCCceecCCCHHHH
Confidence 3799998774 233357888999888862 1 123 356788887654321 22222
Q ss_pred HHHHHHHhhhCCccEEEEecCC--cccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHH-hCCC
Q 020423 215 CDFIYKVSSLSPTRHFIIHSRK--ALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAH 291 (326)
Q Consensus 215 ~~~ia~~le~~Gvd~I~v~~~~--~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~-~GaD 291 (326)
.+.+++.|++.+.+|+.. ....| .+|+.+.++.+.. ++|||++|||.+.+|+.++++ .|||
T Consensus 159 ----~~~~~~~g~~~ii~~~i~~~g~~~g-----------~d~~~i~~~~~~~-~ipvia~GGv~s~~d~~~~~~~~G~~ 222 (253)
T PRK02083 159 ----AKEVEELGAGEILLTSMDRDGTKNG-----------YDLELTRAVSDAV-NVPVIASGGAGNLEHFVEAFTEGGAD 222 (253)
T ss_pred ----HHHHHHcCCCEEEEcCCcCCCCCCC-----------cCHHHHHHHHhhC-CCCEEEECCCCCHHHHHHHHHhCCcc
Confidence 334567899999997633 22222 2488888887764 899999999999999999998 5999
Q ss_pred hhhhhHHHHhC
Q 020423 292 HVMVGRAAYQN 302 (326)
Q Consensus 292 ~V~iGRall~d 302 (326)
+|++|+++...
T Consensus 223 gvivg~al~~~ 233 (253)
T PRK02083 223 AALAASIFHFG 233 (253)
T ss_pred EEeEhHHHHcC
Confidence 99999999865
|
|
| >TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.5e-08 Score=92.78 Aligned_cols=139 Identities=16% Similarity=0.175 Sum_probs=92.1
Q ss_pred HHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHH-hcC----C---CcE------EEEeccCCCCCcc
Q 020423 145 LANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA-ANT----N---VPV------SVKCRIGVDDHDS 210 (326)
Q Consensus 145 ~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr-~~~----~---~pv------~vK~r~g~~~~~~ 210 (326)
.+..+|++.|-+. ..+..+|+++.++.+..- +.+ + -++ .||++.+.+...
T Consensus 91 ~~~~~Ga~~vivg---------------t~~~~~p~~~~~~~~~~~~~~iv~slD~~~g~~~~~~~~~v~i~gw~~~~~- 154 (254)
T TIGR00735 91 KLLRAGADKVSIN---------------TAAVKNPELIYELADRFGSQCIVVAIDAKRVYVNSYCWYEVYIYGGRESTG- 154 (254)
T ss_pred HHHHcCCCEEEEC---------------hhHhhChHHHHHHHHHcCCCCEEEEEEeccCCCCCCccEEEEEeCCcccCC-
Confidence 3445799998773 333457888888887763 222 1 111 356665443221
Q ss_pred HHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhC-
Q 020423 211 YNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKG- 289 (326)
Q Consensus 211 ~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~G- 289 (326)
.+..+ +.+.+++.|+|.|.+|+.+. .|.. ...+++++.++.+. +++|||++|||.+++++.++++.|
T Consensus 155 -~~~~~-~~~~l~~~G~~~iivt~i~~--~g~~-------~g~~~~~~~~i~~~-~~ipvia~GGi~s~~di~~~~~~g~ 222 (254)
T TIGR00735 155 -LDAVE-WAKEVEKLGAGEILLTSMDK--DGTK-------SGYDLELTKAVSEA-VKIPVIASGGAGKPEHFYEAFTKGK 222 (254)
T ss_pred -CCHHH-HHHHHHHcCCCEEEEeCcCc--ccCC-------CCCCHHHHHHHHHh-CCCCEEEeCCCCCHHHHHHHHHcCC
Confidence 12233 34456789999999998654 1211 22458888888766 489999999999999999999966
Q ss_pred CChhhhhHHHHhCCchhHHhHHH
Q 020423 290 AHHVMVGRAAYQNPWYTLGHVDT 312 (326)
Q Consensus 290 aD~V~iGRall~dP~l~~~~i~~ 312 (326)
+|+|++||+++..- +-...+.+
T Consensus 223 ~dgv~~g~a~~~~~-~~~~~~~~ 244 (254)
T TIGR00735 223 ADAALAASVFHYRE-ITIGEVKE 244 (254)
T ss_pred cceeeEhHHHhCCC-CCHHHHHH
Confidence 99999999987542 23344433
|
|
| >cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water | Back alignment and domain information |
|---|
Probab=98.92 E-value=4.7e-08 Score=87.23 Aligned_cols=51 Identities=22% Similarity=0.307 Sum_probs=44.4
Q ss_pred cHHHHHHHHhcC-CCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhCCc
Q 020423 254 KYEYYYALLRDF-PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW 304 (326)
Q Consensus 254 ~~~~i~~i~~~~-~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~dP~ 304 (326)
+.+.+.++++.. .++||++.|||.+++++.++++.|||+|.+|++++..++
T Consensus 158 ~~~~~~~l~~~~~~~~pvia~gGI~s~edi~~~~~~Ga~gvivGsai~~~~~ 209 (217)
T cd00331 158 DLNTTERLAPLIPKDVILVSESGISTPEDVKRLAEAGADAVLIGESLMRAPD 209 (217)
T ss_pred CHHHHHHHHHhCCCCCEEEEEcCCCCHHHHHHHHHcCCCEEEECHHHcCCCC
Confidence 356667776664 379999999999999999999999999999999998877
|
IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis. |
| >KOG1799 consensus Dihydropyrimidine dehydrogenase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.91 E-value=2.4e-09 Score=98.78 Aligned_cols=165 Identities=16% Similarity=0.213 Sum_probs=121.6
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHH
Q 020423 134 SNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQ 213 (326)
Q Consensus 134 ~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e 213 (326)
++..+|.+.+.+..++|.|..|+|+.||+....| + +|..+-+.|..+.|+...|++.+.+|+.-|+.++.++..++..
T Consensus 215 ynk~~w~el~d~~eqag~d~lE~nlscphgm~er-g-mgla~gq~p~v~~EvC~Wi~A~~~Ip~~~kmTPNitd~revar 292 (471)
T KOG1799|consen 215 YNKKCWMELNDSGEQAGQDDLETNLSCPHGMCER-G-MGLALGQCPIVDCEVCGWINAKATIPMVSKMTPNITDKREVAR 292 (471)
T ss_pred hhhhhHHHHhhhHHhhcccchhccCCCCCCCccc-c-ccceeccChhhhHHHhhhhhhccccccccccCCCcccccccch
Confidence 4567899999999999999999999999976432 3 6999999999999999999999999999999998766432110
Q ss_pred --------HHHHHHHHhhhCCccEEEE------ecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCH
Q 020423 214 --------LCDFIYKVSSLSPTRHFII------HSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTV 279 (326)
Q Consensus 214 --------~~~~ia~~le~~Gvd~I~v------~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~ 279 (326)
-+..+..+..-.|+|+=++ .++ ..++|++. ..+.|+....+-.+.+.....|+.+.|||.+.
T Consensus 293 ~~~~~g~~GiaA~NTi~SvM~i~~~~~~P~~~~~~~-sT~GG~S~---~AvRPIAl~~V~~IA~~m~~F~l~~~GGvEt~ 368 (471)
T KOG1799|consen 293 SVNPVGCEGIAAINTIMSVMGIDMKTLRPEPCVEGY-STPGGYSY---KAVRPIALAKVMNIAKMMKEFSLSGIGGVETG 368 (471)
T ss_pred hcCcccccchhhHhHHHHHhcccccccCCCcccccc-cCCCCccc---cccchHHHHHHHHHHHHhhcCccccccCcccc
Confidence 0111222222234444322 111 12345543 35667766666666665546789999999999
Q ss_pred HHHHHHHHhCCChhhhhHHHHhCCc
Q 020423 280 DEVNAALRKGAHHVMVGRAAYQNPW 304 (326)
Q Consensus 280 ~da~~~l~~GaD~V~iGRall~dP~ 304 (326)
+|+.+++..|+..|++.++.+...+
T Consensus 369 ~~~~~Fil~Gs~~vQVCt~V~~~~~ 393 (471)
T KOG1799|consen 369 YDAAEFILLGSNTVQVCTGVMMHGY 393 (471)
T ss_pred cchhhHhhcCCcHhhhhhHHHhcCc
Confidence 9999999999999999999887655
|
|
| >PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.3e-07 Score=94.28 Aligned_cols=134 Identities=13% Similarity=0.085 Sum_probs=85.4
Q ss_pred HHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC-CCcEEEEeccCCCCCccHHHHHHHH
Q 020423 140 AKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFI 218 (326)
Q Consensus 140 ~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~-~~pv~vK~r~g~~~~~~~~e~~~~i 218 (326)
.+.++.+.++|.|.+-+... + | +...+.+.++.+++.. +.|+.++ +..+.++.
T Consensus 230 ~e~a~~L~~agvdvivvD~a--~---------g-----~~~~vl~~i~~i~~~~p~~~vi~g------~v~t~e~a---- 283 (486)
T PRK05567 230 EERAEALVEAGVDVLVVDTA--H---------G-----HSEGVLDRVREIKAKYPDVQIIAG------NVATAEAA---- 283 (486)
T ss_pred HHHHHHHHHhCCCEEEEECC--C---------C-----cchhHHHHHHHHHhhCCCCCEEEe------ccCCHHHH----
Confidence 46666777788887755421 0 1 2345677888888877 7888884 12233332
Q ss_pred HHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcC--CCceEEEeCCCCCHHHHHHHHHhCCChhhhh
Q 020423 219 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF--PDLTFTLNGGINTVDEVNAALRKGAHHVMVG 296 (326)
Q Consensus 219 a~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~--~~iPVIa~GgI~s~~da~~~l~~GaD~V~iG 296 (326)
+.+.++|+|+|.+..+.....+ ...........++.+.++.+.. .++|||+.|||+++.|+.+++..|||.||+|
T Consensus 284 -~~l~~aGad~i~vg~g~gs~~~--~r~~~~~g~p~~~~~~~~~~~~~~~~~~viadGGi~~~~di~kAla~GA~~v~~G 360 (486)
T PRK05567 284 -RALIEAGADAVKVGIGPGSICT--TRIVAGVGVPQITAIADAAEAAKKYGIPVIADGGIRYSGDIAKALAAGASAVMLG 360 (486)
T ss_pred -HHHHHcCCCEEEECCCCCcccc--ceeecCCCcCHHHHHHHHHHHhccCCCeEEEcCCCCCHHHHHHHHHhCCCEEEEC
Confidence 2344699999987432210000 0000011122356665555422 3799999999999999999999999999999
Q ss_pred HHHHhC
Q 020423 297 RAAYQN 302 (326)
Q Consensus 297 Rall~d 302 (326)
+++-..
T Consensus 361 ~~~a~~ 366 (486)
T PRK05567 361 SMLAGT 366 (486)
T ss_pred cccccc
Confidence 988653
|
|
| >PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: |
Back alignment and domain information |
|---|
Probab=98.88 E-value=4.8e-08 Score=84.03 Aligned_cols=136 Identities=21% Similarity=0.213 Sum_probs=89.3
Q ss_pred HHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHH
Q 020423 140 AKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIY 219 (326)
Q Consensus 140 ~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia 219 (326)
.+-++.+.++|+|.|-+.+ + .| .||+-+.++++++++.. ..+..-+ .+++|..
T Consensus 54 ~~ev~~l~~aGadIIAlDa-----T-~R---------~Rp~~l~~li~~i~~~~-~l~MADi-------st~ee~~---- 106 (192)
T PF04131_consen 54 LKEVDALAEAGADIIALDA-----T-DR---------PRPETLEELIREIKEKY-QLVMADI-------STLEEAI---- 106 (192)
T ss_dssp HHHHHHHHHCT-SEEEEE------S-SS---------S-SS-HHHHHHHHHHCT-SEEEEE--------SSHHHHH----
T ss_pred HHHHHHHHHcCCCEEEEec-----C-CC---------CCCcCHHHHHHHHHHhC-cEEeeec-------CCHHHHH----
Confidence 3456667789999999965 1 11 45677899999999876 5555533 2455533
Q ss_pred HHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHH
Q 020423 220 KVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAA 299 (326)
Q Consensus 220 ~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRal 299 (326)
...++|+|+|.-. +.|+.+... . ...+++++.++.+. ++|||+-|+|++|+++.++++.||+.|.||+++
T Consensus 107 -~A~~~G~D~I~TT-----LsGYT~~t~-~-~~pD~~lv~~l~~~--~~pvIaEGri~tpe~a~~al~~GA~aVVVGsAI 176 (192)
T PF04131_consen 107 -NAAELGFDIIGTT-----LSGYTPYTK-G-DGPDFELVRELVQA--DVPVIAEGRIHTPEQAAKALELGAHAVVVGSAI 176 (192)
T ss_dssp -HHHHTT-SEEE-T-----TTTSSTTST-T-SSHHHHHHHHHHHT--TSEEEEESS--SHHHHHHHHHTT-SEEEE-HHH
T ss_pred -HHHHcCCCEEEcc-----cccCCCCCC-C-CCCCHHHHHHHHhC--CCcEeecCCCCCHHHHHHHHhcCCeEEEECccc
Confidence 3357999998643 223332211 1 34579999998864 899999999999999999999999999999875
Q ss_pred HhCCchhHHhHHHh
Q 020423 300 YQNPWYTLGHVDTA 313 (326)
Q Consensus 300 l~dP~l~~~~i~~~ 313 (326)
.+|++..++..+.
T Consensus 177 -TrP~~It~~F~~a 189 (192)
T PF04131_consen 177 -TRPQEITKRFVDA 189 (192)
T ss_dssp -H-HHHHHHHHHHH
T ss_pred -CCHHHHHHHHHHH
Confidence 6788777766654
|
; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B. |
| >PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.4e-07 Score=88.13 Aligned_cols=195 Identities=11% Similarity=0.072 Sum_probs=125.0
Q ss_pred CeecCCcEEEccCCCCChHHHHHHHHHcCCCcEEEecceeeccccccccchhhhh-hcCC-CCCcEEEEecCCCHHHHHH
Q 020423 64 RQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFL-AFSP-EQHPIVLQIGGSNLDNLAK 141 (326)
Q Consensus 64 ~~~l~nrivlAPM~~~s~~~~r~~~~~~Gg~gli~te~~~~~~~~~~~~~~~~~~-~~~~-~~~piivQL~g~~~~~f~~ 141 (326)
...++-|++-|+|.++++.+++......|+.+.+- -... .+....+. +.++ ....+.+.+ |..+++|.+
T Consensus 42 ~~~~giPii~AnMdTV~~~~mA~~la~~g~~~~iH-k~~~-------~e~~~~fv~~~~~~~~~~~~vav-G~~~~d~er 112 (346)
T PRK05096 42 QSWSGVPIIAANMDTVGTFEMAKALASFDILTAVH-KHYS-------VEEWAAFVNNSSADVLKHVMVST-GTSDADFEK 112 (346)
T ss_pred ccccCCceEecCCCccccHHHHHHHHHCCCeEEEe-cCCC-------HHHHHHHHHhccccccceEEEEe-cCCHHHHHH
Confidence 44456799999999999999998877778665321 1111 11112222 1221 123344443 567788999
Q ss_pred HHHHHHH-CCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC-CCcEEEEeccCCCCCccHHHHHHHHH
Q 020423 142 ATELANA-YNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFIY 219 (326)
Q Consensus 142 aA~~a~~-aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~-~~pv~vK~r~g~~~~~~~~e~~~~ia 219 (326)
+.+.++. +|.|.|-|..+. + ..+.+.++++.||+.. +.+|... +..+.+. +
T Consensus 113 ~~~L~~~~~g~D~iviD~Ah--------G--------hs~~~i~~ik~ik~~~P~~~vIaG------NV~T~e~-----a 165 (346)
T PRK05096 113 TKQILALSPALNFICIDVAN--------G--------YSEHFVQFVAKAREAWPDKTICAG------NVVTGEM-----V 165 (346)
T ss_pred HHHHHhcCCCCCEEEEECCC--------C--------cHHHHHHHHHHHHHhCCCCcEEEe------cccCHHH-----H
Confidence 8887774 799999996431 1 3667889999999876 5566553 2233332 2
Q ss_pred HHhhhCCccEEEEecCC------cccCCCCcCCcCCCCCccHHHHH---HHHhcCCCceEEEeCCCCCHHHHHHHHHhCC
Q 020423 220 KVSSLSPTRHFIIHSRK------ALLNGISPAENRTIPPLKYEYYY---ALLRDFPDLTFTLNGGINTVDEVNAALRKGA 290 (326)
Q Consensus 220 ~~le~~Gvd~I~v~~~~------~~~~g~~~~~~~~~~~~~~~~i~---~i~~~~~~iPVIa~GgI~s~~da~~~l~~Ga 290 (326)
+.|.++|+|.+-|--+. ....|.. .| .+..+. +..++. ++|||+-|||.+.-|+.+++..||
T Consensus 166 ~~Li~aGAD~vKVGIGpGSiCtTr~vtGvG------~P--QltAV~~~a~~a~~~-gvpiIADGGi~~sGDI~KAlaaGA 236 (346)
T PRK05096 166 EELILSGADIVKVGIGPGSVCTTRVKTGVG------YP--QLSAVIECADAAHGL-GGQIVSDGGCTVPGDVAKAFGGGA 236 (346)
T ss_pred HHHHHcCCCEEEEcccCCccccCccccccC------hh--HHHHHHHHHHHHHHc-CCCEEecCCcccccHHHHHHHcCC
Confidence 33456999999874221 1111211 11 233333 333443 899999999999999999999999
Q ss_pred ChhhhhHHHHhCC
Q 020423 291 HHVMVGRAAYQNP 303 (326)
Q Consensus 291 D~V~iGRall~dP 303 (326)
|.||+|+.|-...
T Consensus 237 d~VMlGsllAGt~ 249 (346)
T PRK05096 237 DFVMLGGMLAGHE 249 (346)
T ss_pred CEEEeChhhcCcc
Confidence 9999999886543
|
|
| >cd00945 Aldolase_Class_I Class I aldolases | Back alignment and domain information |
|---|
Probab=98.86 E-value=3.8e-07 Score=79.41 Aligned_cols=147 Identities=16% Similarity=0.172 Sum_probs=107.8
Q ss_pred CCcEEEEecCCC----HHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC--CCcE
Q 020423 124 QHPIVLQIGGSN----LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPV 197 (326)
Q Consensus 124 ~~piivQL~g~~----~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~--~~pv 197 (326)
..|+++++.... .++..+.++.+.++|+|++.+.. | |+.....+.+.+.+.++++++.+ +.|+
T Consensus 48 ~~~v~~~v~~~~~~~~~~~~~~~a~~a~~~Gad~i~v~~--~---------~~~~~~~~~~~~~~~~~~i~~~~~~~~pv 116 (201)
T cd00945 48 DVPVIVVVGFPTGLTTTEVKVAEVEEAIDLGADEIDVVI--N---------IGSLKEGDWEEVLEEIAAVVEAADGGLPL 116 (201)
T ss_pred CCeEEEEecCCCCCCcHHHHHHHHHHHHHcCCCEEEEec--c---------HHHHhCCCHHHHHHHHHHHHHHhcCCceE
Confidence 578899998877 89999999999999999999963 1 11111124788888888888874 8999
Q ss_pred EEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCC-CceEEEeCCC
Q 020423 198 SVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFP-DLTFTLNGGI 276 (326)
Q Consensus 198 ~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~-~iPVIa~GgI 276 (326)
.++..++.. .+.+++.+ +.+++++.|+|.|..+.+.. .+ ..+++.+.++++... ++||+..||+
T Consensus 117 ~iy~~p~~~--~~~~~~~~-~~~~~~~~g~~~iK~~~~~~--~~----------~~~~~~~~~i~~~~~~~~~v~~~gg~ 181 (201)
T cd00945 117 KVILETRGL--KTADEIAK-AARIAAEAGADFIKTSTGFG--GG----------GATVEDVKLMKEAVGGRVGVKAAGGI 181 (201)
T ss_pred EEEEECCCC--CCHHHHHH-HHHHHHHhCCCEEEeCCCCC--CC----------CCCHHHHHHHHHhcccCCcEEEECCC
Confidence 999887654 23333333 34445678999998775421 00 123566666665543 6899999999
Q ss_pred CCHHHHHHHHHhCCChhhhh
Q 020423 277 NTVDEVNAALRKGAHHVMVG 296 (326)
Q Consensus 277 ~s~~da~~~l~~GaD~V~iG 296 (326)
.+++.+.+++..||+++.+|
T Consensus 182 ~~~~~~~~~~~~Ga~g~~~g 201 (201)
T cd00945 182 KTLEDALAAIEAGADGIGTS 201 (201)
T ss_pred CCHHHHHHHHHhccceeecC
Confidence 99999999999999999875
|
The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin. |
| >COG1304 idi Isopentenyl diphosphate isomerase (BS_ypgA, MTH48 and related proteins) [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.86 E-value=2.5e-08 Score=95.02 Aligned_cols=104 Identities=18% Similarity=0.150 Sum_probs=71.6
Q ss_pred CCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEec--CCcccCCCCcCCcCCCCCcc
Q 020423 177 LDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHS--RKALLNGISPAENRTIPPLK 254 (326)
Q Consensus 177 ~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~--~~~~~~g~~~~~~~~~~~~~ 254 (326)
..|-...|.+..+++.+..|+.+| |... .+|. . ..-..|.|.|.++. +..+..| +..
T Consensus 201 ~~P~i~ked~~~i~~~~~~~lv~k---GV~~---~~D~----~-~a~~tg~~~I~vsnhggrqlD~g----------~st 259 (360)
T COG1304 201 SVPVISKEDGAGISKEWAGPLVLK---GILA---PEDA----A-GAGGTGADGIEVSNHGGRQLDWG----------IST 259 (360)
T ss_pred CCCcccHHHHhHHHHhcCCcHHHh---CCCC---HHHH----H-hhccCCceEEEEEcCCCccccCC----------CCh
Confidence 455666666777777666666555 2222 1221 2 22357899999863 3222112 123
Q ss_pred HHHHHHHHhcCC-CceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHh
Q 020423 255 YEYYYALLRDFP-DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 301 (326)
Q Consensus 255 ~~~i~~i~~~~~-~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~ 301 (326)
.+.+.++.+... ++||++.|||+++.|+.+++..|||+|++||++|.
T Consensus 260 ~~~L~ei~~av~~~~~vi~dGGiR~G~Dv~KAlALGA~~v~igrp~L~ 307 (360)
T COG1304 260 ADSLPEIVEAVGDRIEVIADGGIRSGLDVAKALALGADAVGIGRPFLY 307 (360)
T ss_pred HHHHHHHHHHhCCCeEEEecCCCCCHHHHHHHHHhCCchhhhhHHHHH
Confidence 667777777765 49999999999999999999999999999999885
|
|
| >PRK13125 trpA tryptophan synthase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=5.7e-08 Score=88.40 Aligned_cols=155 Identities=15% Similarity=0.133 Sum_probs=101.2
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHH-----HHHHHHHhcCCCcEE--EEeccCCC
Q 020423 134 SNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVG-----EAMSVIAANTNVPVS--VKCRIGVD 206 (326)
Q Consensus 134 ~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~-----eiv~avr~~~~~pv~--vK~r~g~~ 206 (326)
.+.+++.+.++.+.++ +|.+|||+.||.+. . | |-.+.+..+.+. ++++++|+.++.|+. +|+.....
T Consensus 15 p~~~~~~~~~~~l~~~-ad~iElgip~sdp~-a--d--G~~i~~~~~~a~~~g~~~~v~~vr~~~~~Pl~lM~y~n~~~~ 88 (244)
T PRK13125 15 PNVESFKEFIIGLVEL-VDILELGIPPKYPK-Y--D--GPVIRKSHRKVKGLDIWPLLEEVRKDVSVPIILMTYLEDYVD 88 (244)
T ss_pred CCHHHHHHHHHHHHhh-CCEEEECCCCCCCC-C--C--CHHHHHHHHHHHHcCcHHHHHHHhccCCCCEEEEEecchhhh
Confidence 5789999999999888 99999999988863 1 2 555666666666 899999988888974 55554211
Q ss_pred CCccHHHHHHHHHHHhhhCCccEEEEecC-----------------------------Ccc---------cCC-----CC
Q 020423 207 DHDSYNQLCDFIYKVSSLSPTRHFIIHSR-----------------------------KAL---------LNG-----IS 243 (326)
Q Consensus 207 ~~~~~~e~~~~ia~~le~~Gvd~I~v~~~-----------------------------~~~---------~~g-----~~ 243 (326)
..++.+ +.+.++|+|.+++|.- +.. ..+ ..
T Consensus 89 ---~~~~~i----~~~~~~Gadgvii~dlp~e~~~~~~~~~~~~~~~Gl~~~~~v~p~T~~e~l~~~~~~~~~~l~msv~ 161 (244)
T PRK13125 89 ---SLDNFL----NMARDVGADGVLFPDLLIDYPDDLEKYVEIIKNKGLKPVFFTSPKFPDLLIHRLSKLSPLFIYYGLR 161 (244)
T ss_pred ---CHHHHH----HHHHHcCCCEEEECCCCCCcHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhCCCEEEEEeC
Confidence 222221 2234567777777631 000 000 00
Q ss_pred cCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHh
Q 020423 244 PAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 301 (326)
Q Consensus 244 ~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~ 301 (326)
+.......+.-.+.+.++++...+.||+.-|||.+++++.++++.|||++.+|++++.
T Consensus 162 ~~~g~~~~~~~~~~i~~lr~~~~~~~i~v~gGI~~~e~i~~~~~~gaD~vvvGSai~~ 219 (244)
T PRK13125 162 PATGVPLPVSVERNIKRVRNLVGNKYLVVGFGLDSPEDARDALSAGADGVVVGTAFIE 219 (244)
T ss_pred CCCCCCchHHHHHHHHHHHHhcCCCCEEEeCCcCCHHHHHHHHHcCCCEEEECHHHHH
Confidence 0000011111123555555544357999999999999999999999999999999975
|
|
| >COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.82 E-value=4e-08 Score=87.70 Aligned_cols=146 Identities=19% Similarity=0.315 Sum_probs=101.3
Q ss_pred cEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEecc--
Q 020423 126 PIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRI-- 203 (326)
Q Consensus 126 piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~-- 203 (326)
+.-+|+.|-- .. .+.++++.++|.+.|-+- .....+|+++.++++..-..+ -|.+-.|.
T Consensus 75 ~~~vQvGGGI-Rs-~~~v~~ll~~G~~rViiG---------------t~av~~p~~v~~~~~~~g~ri--vv~lD~r~g~ 135 (241)
T COG0106 75 DVPVQVGGGI-RS-LEDVEALLDAGVARVIIG---------------TAAVKNPDLVKELCEEYGDRI--VVALDARDGK 135 (241)
T ss_pred CCCEEeeCCc-CC-HHHHHHHHHCCCCEEEEe---------------cceecCHHHHHHHHHHcCCcE--EEEEEccCCc
Confidence 5668987632 22 234455666898888773 333478999999998875332 23333332
Q ss_pred ----CCCCCccHHHHHHHHHHHhhhCCccEEEEecCC--cccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCC
Q 020423 204 ----GVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRK--ALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGIN 277 (326)
Q Consensus 204 ----g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~--~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~ 277 (326)
||.+...+ ++.+ +++.+++.|+..|.++.-+ ....| .+++.+.++.+.. ++|||++|||.
T Consensus 136 vav~GW~e~s~~-~~~~-l~~~~~~~g~~~ii~TdI~~DGtl~G-----------~n~~l~~~l~~~~-~ipviaSGGv~ 201 (241)
T COG0106 136 VAVSGWQEDSGV-ELEE-LAKRLEEVGLAHILYTDISRDGTLSG-----------PNVDLVKELAEAV-DIPVIASGGVS 201 (241)
T ss_pred cccccccccccC-CHHH-HHHHHHhcCCCeEEEEecccccccCC-----------CCHHHHHHHHHHh-CcCEEEecCcC
Confidence 46554321 2222 4556778999999988543 22222 3588888888876 99999999999
Q ss_pred CHHHHHHHHHh-CCChhhhhHHHHhCCc
Q 020423 278 TVDEVNAALRK-GAHHVMVGRAAYQNPW 304 (326)
Q Consensus 278 s~~da~~~l~~-GaD~V~iGRall~dP~ 304 (326)
|.+|+..+.+. |+++|.+|||++..-.
T Consensus 202 s~~Di~~l~~~~G~~GvIvG~ALy~g~~ 229 (241)
T COG0106 202 SLDDIKALKELSGVEGVIVGRALYEGKF 229 (241)
T ss_pred CHHHHHHHHhcCCCcEEEEehHHhcCCC
Confidence 99999999998 8999999999997654
|
|
| >PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=98.80 E-value=2.6e-07 Score=84.83 Aligned_cols=163 Identities=17% Similarity=0.138 Sum_probs=100.4
Q ss_pred CCCcEEEEecCCCH--------HHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCC
Q 020423 123 EQHPIVLQIGGSNL--------DNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTN 194 (326)
Q Consensus 123 ~~~piivQL~g~~~--------~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~ 194 (326)
.+.++|..+-..+| .+..+.|+...++|+++|-+.. ....|||+ .+.+.++++.++
T Consensus 48 ~~~~vIaeik~~sps~g~i~~~~~~~~~A~~~~~~GA~aisvlt--------e~~~f~g~--------~~~l~~v~~~v~ 111 (260)
T PRK00278 48 GKPAVIAEVKKASPSKGVIREDFDPVEIAKAYEAGGAACLSVLT--------DERFFQGS--------LEYLRAARAAVS 111 (260)
T ss_pred CCCeEEEEeeCCCCCCCccCCCCCHHHHHHHHHhCCCeEEEEec--------ccccCCCC--------HHHHHHHHHhcC
Confidence 34577777754333 2457888888999999997752 22446765 356677777888
Q ss_pred CcEEEEecc------------CCC---------CCccHHHHHHHHH----------------HHhhhCCccEEEEecCCc
Q 020423 195 VPVSVKCRI------------GVD---------DHDSYNQLCDFIY----------------KVSSLSPTRHFIIHSRKA 237 (326)
Q Consensus 195 ~pv~vK~r~------------g~~---------~~~~~~e~~~~ia----------------~~le~~Gvd~I~v~~~~~ 237 (326)
+||..|-=. |.+ ...+++++.+... +...+.|+|+|-+++++.
T Consensus 112 iPvl~kdfi~~~~qi~~a~~~GAD~VlLi~~~l~~~~l~~li~~a~~lGl~~lvevh~~~E~~~A~~~gadiIgin~rdl 191 (260)
T PRK00278 112 LPVLRKDFIIDPYQIYEARAAGADAILLIVAALDDEQLKELLDYAHSLGLDVLVEVHDEEELERALKLGAPLIGINNRNL 191 (260)
T ss_pred CCEEeeeecCCHHHHHHHHHcCCCEEEEEeccCCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHcCCCEEEECCCCc
Confidence 999876211 000 0001111111000 111234455554444331
Q ss_pred ccCCCCcCCcCCCCCccHHHHHHHHhcCCC-ceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhCCchhHHhHHHh
Q 020423 238 LLNGISPAENRTIPPLKYEYYYALLRDFPD-LTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTA 313 (326)
Q Consensus 238 ~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~-iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~dP~l~~~~i~~~ 313 (326)
. ....+++...++.+..++ +|+|+.|||.+++++.++++.|+|+|.+|++++..++ ..+.+.+.
T Consensus 192 ~-----------~~~~d~~~~~~l~~~~p~~~~vIaegGI~t~ed~~~~~~~Gad~vlVGsaI~~~~d-p~~~~~~l 256 (260)
T PRK00278 192 K-----------TFEVDLETTERLAPLIPSDRLVVSESGIFTPEDLKRLAKAGADAVLVGESLMRADD-PGAALREL 256 (260)
T ss_pred c-----------cccCCHHHHHHHHHhCCCCCEEEEEeCCCCHHHHHHHHHcCCCEEEECHHHcCCCC-HHHHHHHH
Confidence 0 111235566666666553 6999999999999999999999999999999999888 45555543
|
|
| >PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.5e-07 Score=84.30 Aligned_cols=139 Identities=18% Similarity=0.144 Sum_probs=89.1
Q ss_pred HHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHHH
Q 020423 141 KATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYK 220 (326)
Q Consensus 141 ~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia~ 220 (326)
+.++.+.++|+|.|-+... ... +.+ | +.+.++++.+++..++++.+.+. +.++. +
T Consensus 79 ~~v~~a~~aGad~I~~d~~--~~~--~p~--~-------~~~~~~i~~~~~~~~i~vi~~v~-------t~ee~-----~ 133 (221)
T PRK01130 79 KEVDALAAAGADIIALDAT--LRP--RPD--G-------ETLAELVKRIKEYPGQLLMADCS-------TLEEG-----L 133 (221)
T ss_pred HHHHHHHHcCCCEEEEeCC--CCC--CCC--C-------CCHHHHHHHHHhCCCCeEEEeCC-------CHHHH-----H
Confidence 3467888999998888532 100 000 0 34567777776644667665322 23332 2
Q ss_pred HhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHH
Q 020423 221 VSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAY 300 (326)
Q Consensus 221 ~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall 300 (326)
.+.+.|+|++.++.+.. .+... ...+..++.++++++.. ++||++.|||.+++++.++++.|||+|++|++++
T Consensus 134 ~a~~~G~d~i~~~~~g~--t~~~~----~~~~~~~~~i~~i~~~~-~iPvia~GGI~t~~~~~~~l~~GadgV~iGsai~ 206 (221)
T PRK01130 134 AAQKLGFDFIGTTLSGY--TEETK----KPEEPDFALLKELLKAV-GCPVIAEGRINTPEQAKKALELGAHAVVVGGAIT 206 (221)
T ss_pred HHHHcCCCEEEcCCcee--ecCCC----CCCCcCHHHHHHHHHhC-CCCEEEECCCCCHHHHHHHHHCCCCEEEEchHhc
Confidence 34578999998753211 01000 11123467777877665 8999999999999999999999999999999976
Q ss_pred hCCchhHHhHHH
Q 020423 301 QNPWYTLGHVDT 312 (326)
Q Consensus 301 ~dP~l~~~~i~~ 312 (326)
+|+...++..+
T Consensus 207 -~~~~~~~~~~~ 217 (221)
T PRK01130 207 -RPEEITKWFVD 217 (221)
T ss_pred -CCHHHHHHHHH
Confidence 45545555444
|
|
| >COG0214 SNZ1 Pyridoxine biosynthesis enzyme [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.76 E-value=5.5e-08 Score=85.46 Aligned_cols=164 Identities=21% Similarity=0.247 Sum_probs=109.6
Q ss_pred HHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHH
Q 020423 140 AKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIY 219 (326)
Q Consensus 140 ~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia 219 (326)
.+.|+.++++|+-+|------|.. .|..+ |-+-+.+|+.+.||+++| .+||..|+|+|... + +
T Consensus 30 ~EQA~IAE~aGAvAVMaLervPaD--iR~aG-GVaRMaDp~~i~eim~aV----sIPVMAKvRIGH~~--------E--A 92 (296)
T COG0214 30 AEQARIAEEAGAVAVMALERVPAD--IRAAG-GVARMADPKMIEEIMDAV----SIPVMAKVRIGHFV--------E--A 92 (296)
T ss_pred HHHHHHHHhcCceeEeehhhCcHH--HHhcc-CccccCCHHHHHHHHHhc----ccceeeeeecchhH--------H--H
Confidence 356888999998777665455663 34333 677889999999888775 69999999998321 1 5
Q ss_pred HHhhhCCccEEEEec----CCc--------------------------------c--cCCCCcCCc--------------
Q 020423 220 KVSSLSPTRHFIIHS----RKA--------------------------------L--LNGISPAEN-------------- 247 (326)
Q Consensus 220 ~~le~~Gvd~I~v~~----~~~--------------------------------~--~~g~~~~~~-------------- 247 (326)
++||..|+|+|+=+- .+. + ..|..+..+
T Consensus 93 ~iLealgVD~IDESEVLTPAD~~~Hi~K~~FtVPFVcGarnLgEAlRRI~EGAaMIRTKGEaGTGnv~eAVrHmr~i~~e 172 (296)
T COG0214 93 QILEALGVDMIDESEVLTPADEEFHINKWKFTVPFVCGARNLGEALRRISEGAAMIRTKGEAGTGNVVEAVRHMRKINGE 172 (296)
T ss_pred HHHHHhCCCccccccccCCCchhhhcchhhcccceecCcCcHHHHHHHHhhhHHHHhcCCCCCCCcHHHHHHHHHHHHHH
Confidence 677888999986321 000 0 001100000
Q ss_pred -CCC--------------CCccHHHHHHHHhcCCCceE--EEeCCCCCHHHHHHHHHhCCChhhhhHHHHh--CCchhHH
Q 020423 248 -RTI--------------PPLKYEYYYALLRDFPDLTF--TLNGGINTVDEVNAALRKGAHHVMVGRAAYQ--NPWYTLG 308 (326)
Q Consensus 248 -~~~--------------~~~~~~~i~~i~~~~~~iPV--Ia~GgI~s~~da~~~l~~GaD~V~iGRall~--dP~l~~~ 308 (326)
+.+ ....++++.++.+. .++|| ++.|||.||.|+.-+++.|||+|.+|++++. ||.-+.+
T Consensus 173 I~~l~~~~edel~~~Ak~~~~p~elv~~~~~~-grLPVvnFAAGGvATPADAALMM~LGadGVFVGSGIFKS~~P~~~A~ 251 (296)
T COG0214 173 IRRLQSMTEDELYVVAKELQAPYELVKEVAKL-GRLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSSNPEKRAK 251 (296)
T ss_pred HHHHHccCHHHHHHHHHHhCChHHHHHHHHHh-CCCCeEeecccCcCChhHHHHHHHhCCCeEEecccccCCCCHHHHHH
Confidence 000 00013444444443 37787 6899999999999999999999999999985 6777778
Q ss_pred hHHHhhhCCCCCC
Q 020423 309 HVDTAIYGAPSSG 321 (326)
Q Consensus 309 ~i~~~~~~~~~~~ 321 (326)
.|.+...++.+|.
T Consensus 252 AIV~A~~~yddp~ 264 (296)
T COG0214 252 AIVEATTHYDDPE 264 (296)
T ss_pred HHHHHHHccCCHH
Confidence 8887777776664
|
|
| >cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF) | Back alignment and domain information |
|---|
Probab=98.74 E-value=3.5e-08 Score=89.59 Aligned_cols=85 Identities=18% Similarity=0.201 Sum_probs=68.1
Q ss_pred HHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhH
Q 020423 218 IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGR 297 (326)
Q Consensus 218 ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGR 297 (326)
+++.+++.|+|.|+++..+.. +. ..+.+++.++++++.. ++||+++|||.+.++++++++.|||.|++||
T Consensus 32 ~a~~~~~~G~~~i~i~d~~~~--~~-------~~~~~~~~i~~i~~~~-~~pv~~~GGI~s~~d~~~~l~~G~~~v~ig~ 101 (243)
T cd04731 32 LAKRYNEQGADELVFLDITAS--SE-------GRETMLDVVERVAEEV-FIPLTVGGGIRSLEDARRLLRAGADKVSINS 101 (243)
T ss_pred HHHHHHHCCCCEEEEEcCCcc--cc-------cCcccHHHHHHHHHhC-CCCEEEeCCCCCHHHHHHHHHcCCceEEECc
Confidence 355677899999999987641 11 1234678888888765 8999999999999999999999999999999
Q ss_pred HHHhCCchhHHhHHH
Q 020423 298 AAYQNPWYTLGHVDT 312 (326)
Q Consensus 298 all~dP~l~~~~i~~ 312 (326)
+++.||+++.+..+.
T Consensus 102 ~~~~~p~~~~~i~~~ 116 (243)
T cd04731 102 AAVENPELIREIAKR 116 (243)
T ss_pred hhhhChHHHHHHHHH
Confidence 999999965554443
|
Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria. |
| >PF01645 Glu_synthase: Conserved region in glutamate synthase; InterPro: IPR002932 Ferredoxin-dependent glutamate synthases have been implicated in a number of functions including photorespiration in Arabidopsis where they may also play a role in primary nitrogen assimilation in roots [] | Back alignment and domain information |
|---|
Probab=98.73 E-value=4.4e-08 Score=93.42 Aligned_cols=113 Identities=20% Similarity=0.251 Sum_probs=68.5
Q ss_pred CCHHHHHHHHHHHHhcC-CCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcC---CcCCCCC
Q 020423 177 LDPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPA---ENRTIPP 252 (326)
Q Consensus 177 ~r~~~l~eiv~avr~~~-~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~---~~~~~~~ 252 (326)
..++-+.+.++.+|+.. +.||.+|+-.+.. .++. +....++|+|+|+|+|..... |.++. +....|.
T Consensus 185 ~s~edl~~~I~~Lr~~~~~~pVgvKl~~~~~----~~~~----~~~~~~ag~D~ItIDG~~GGT-GAap~~~~d~~GlP~ 255 (368)
T PF01645_consen 185 YSIEDLAQLIEELRELNPGKPVGVKLVAGRG----VEDI----AAGAAKAGADFITIDGAEGGT-GAAPLTSMDHVGLPT 255 (368)
T ss_dssp SSHHHHHHHHHHHHHH-TTSEEEEEEE-STT----HHHH----HHHHHHTT-SEEEEE-TT----SSEECCHHHHC---H
T ss_pred CCHHHHHHHHHHHHhhCCCCcEEEEECCCCc----HHHH----HHhhhhccCCEEEEeCCCCCC-CCCchhHHhhCCCcH
Confidence 45788999999999988 8999999987532 2222 222457999999999876422 11111 0001111
Q ss_pred ccHHHHH---HHHhcC---CCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHH
Q 020423 253 LKYEYYY---ALLRDF---PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAY 300 (326)
Q Consensus 253 ~~~~~i~---~i~~~~---~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall 300 (326)
...+. +...+. -++.++++||+.++.|+.+++..|||+|.+||++|
T Consensus 256 --~~~l~~a~~~L~~~glr~~V~Li~sGgl~t~~dv~kalaLGAD~v~igt~~l 307 (368)
T PF01645_consen 256 --EYALARAHQALVKNGLRDRVSLIASGGLRTGDDVAKALALGADAVYIGTAAL 307 (368)
T ss_dssp --HHHHHHHHHHHHCTT-CCCSEEEEESS--SHHHHHHHHHCT-SEEE-SHHHH
T ss_pred --HHHHHHHHHHHHHcCCCCceEEEEeCCccCHHHHHHHHhcCCCeeEecchhh
Confidence 11122 222221 25899999999999999999999999999999987
|
This region is expressed as a seperate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.; GO: 0015930 glutamate synthase activity, 0016638 oxidoreductase activity, acting on the CH-NH2 group of donors, 0006537 glutamate biosynthetic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A. |
| >PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=4.2e-08 Score=89.69 Aligned_cols=85 Identities=21% Similarity=0.262 Sum_probs=69.1
Q ss_pred HHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhH
Q 020423 218 IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGR 297 (326)
Q Consensus 218 ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGR 297 (326)
+++.+++.|++.++++..+....+ .+.+++.++++.+.. ++||+++|||.|.++++++++.|||.|++||
T Consensus 35 ~a~~~~~~G~~~i~i~dl~~~~~~---------~~~~~~~i~~i~~~~-~ipv~~~GGi~s~~~~~~~l~~Ga~~Viigt 104 (253)
T PRK02083 35 LAKRYNEEGADELVFLDITASSEG---------RDTMLDVVERVAEQV-FIPLTVGGGIRSVEDARRLLRAGADKVSINS 104 (253)
T ss_pred HHHHHHHcCCCEEEEEeCCccccc---------CcchHHHHHHHHHhC-CCCEEeeCCCCCHHHHHHHHHcCCCEEEECh
Confidence 345567899999999988752111 134688898888775 8999999999999999999999999999999
Q ss_pred HHHhCCchhHHhHHH
Q 020423 298 AAYQNPWYTLGHVDT 312 (326)
Q Consensus 298 all~dP~l~~~~i~~ 312 (326)
+++.||+++.+..+.
T Consensus 105 ~~l~~p~~~~ei~~~ 119 (253)
T PRK02083 105 AAVANPELISEAADR 119 (253)
T ss_pred hHhhCcHHHHHHHHH
Confidence 999999965554444
|
|
| >cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate | Back alignment and domain information |
|---|
Probab=98.72 E-value=2.8e-07 Score=82.46 Aligned_cols=130 Identities=16% Similarity=0.131 Sum_probs=87.6
Q ss_pred HHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHHH
Q 020423 141 KATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYK 220 (326)
Q Consensus 141 ~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia~ 220 (326)
+.++.+.++|+|.|.++...-. + ...+.+.++++++++..+.++.+.+. +.++. .
T Consensus 83 ~~~~~a~~aGad~I~~~~~~~~----~---------p~~~~~~~~i~~~~~~g~~~iiv~v~-------t~~ea-----~ 137 (219)
T cd04729 83 EEVDALAAAGADIIALDATDRP----R---------PDGETLAELIKRIHEEYNCLLMADIS-------TLEEA-----L 137 (219)
T ss_pred HHHHHHHHcCCCEEEEeCCCCC----C---------CCCcCHHHHHHHHHHHhCCeEEEECC-------CHHHH-----H
Confidence 4568888999999998742211 0 00124567777776655577776432 23332 2
Q ss_pred HhhhCCccEEEEe--cCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHH
Q 020423 221 VSSLSPTRHFIIH--SRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRA 298 (326)
Q Consensus 221 ~le~~Gvd~I~v~--~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRa 298 (326)
...+.|+|++.+. +.+.... ......++.++++++.. ++||+++|||.+++++.++++.|||+|++|++
T Consensus 138 ~a~~~G~d~i~~~~~g~t~~~~--------~~~~~~~~~l~~i~~~~-~ipvia~GGI~~~~~~~~~l~~GadgV~vGsa 208 (219)
T cd04729 138 NAAKLGFDIIGTTLSGYTEETA--------KTEDPDFELLKELRKAL-GIPVIAEGRINSPEQAAKALELGADAVVVGSA 208 (219)
T ss_pred HHHHcCCCEEEccCcccccccc--------CCCCCCHHHHHHHHHhc-CCCEEEeCCCCCHHHHHHHHHCCCCEEEEchH
Confidence 3356899999763 3221100 01122477888887665 89999999999999999999999999999999
Q ss_pred HHhCCc
Q 020423 299 AYQNPW 304 (326)
Q Consensus 299 ll~dP~ 304 (326)
++...+
T Consensus 209 l~~~~~ 214 (219)
T cd04729 209 ITRPEH 214 (219)
T ss_pred HhChHh
Confidence 876655
|
This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates. |
| >cd04732 HisA HisA | Back alignment and domain information |
|---|
Probab=98.70 E-value=5.6e-08 Score=87.57 Aligned_cols=85 Identities=18% Similarity=0.342 Sum_probs=68.2
Q ss_pred HHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhH
Q 020423 218 IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGR 297 (326)
Q Consensus 218 ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGR 297 (326)
+++.+++.|+|.++|+..+....+ .+.+++.++++.+.. ++||++.|||+++++++++++.|||.|++|+
T Consensus 34 ~a~~~~~~g~d~l~v~dl~~~~~~---------~~~~~~~i~~i~~~~-~~pv~~~GgI~~~e~~~~~~~~Gad~vvigs 103 (234)
T cd04732 34 VAKKWEEAGAKWLHVVDLDGAKGG---------EPVNLELIEEIVKAV-GIPVQVGGGIRSLEDIERLLDLGVSRVIIGT 103 (234)
T ss_pred HHHHHHHcCCCEEEEECCCccccC---------CCCCHHHHHHHHHhc-CCCEEEeCCcCCHHHHHHHHHcCCCEEEECc
Confidence 455667799999999977653221 123578888887765 8999999999999999999999999999999
Q ss_pred HHHhCCchhHHhHHH
Q 020423 298 AAYQNPWYTLGHVDT 312 (326)
Q Consensus 298 all~dP~l~~~~i~~ 312 (326)
+++.||+++.+..+.
T Consensus 104 ~~l~dp~~~~~i~~~ 118 (234)
T cd04732 104 AAVKNPELVKELLKE 118 (234)
T ss_pred hHHhChHHHHHHHHH
Confidence 999999965444443
|
Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. |
| >KOG0538 consensus Glycolate oxidase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.64 E-value=2.1e-06 Score=78.54 Aligned_cols=211 Identities=17% Similarity=0.190 Sum_probs=126.3
Q ss_pred ccccCeecCCcEEEccCCC----CChHHHHH--HHHHcCCCcEEEecceeeccccccccchhhhhhcCCCCCcEEEEecC
Q 020423 60 EMVARQYLPPWFSVAPMMD----WTDNHYRT--LARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGG 133 (326)
Q Consensus 60 ~~ig~~~l~nrivlAPM~~----~s~~~~r~--~~~~~Gg~gli~te~~~~~~~~~~~~~~~~~~~~~~~~~piivQL~g 133 (326)
.++=|-.+.-+|.+||.+- ..|-+... .+.+.| ..++++-+.+ ...+....-.+. .--..||+-
T Consensus 60 TtvlG~~i~~Pi~iapTa~qkma~pdGE~~taraa~~~~-~~~i~Ss~at--------~S~EdI~~aap~-~~rwfQLYv 129 (363)
T KOG0538|consen 60 TTVLGQKISAPIMIAPTAMQKMAHPDGELATARAAQAAG-TIMILSSWAT--------CSVEDIASAAPP-GIRWFQLYV 129 (363)
T ss_pred ceeccccccceeEEcchHHHhccCCcccHHHHHHHHhcC-CcEEEechhc--------CCHHHHHhhCCC-CcEEEEEEe
Confidence 4444667778999999532 22444432 333333 4444443322 111222111112 235678875
Q ss_pred C-CHHHHHHHHHHHHHCCCCEEEecCCCCCCcccC-------------------------CC--------CccccccCCH
Q 020423 134 S-NLDNLAKATELANAYNYDEINLNCGCPSPKVAG-------------------------HG--------CFGVSLMLDP 179 (326)
Q Consensus 134 ~-~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r-------------------------~d--------~yGgsl~~r~ 179 (326)
+ +.+--.+..+|++++||..+-+....|.--+.+ .+ .|+++. -++
T Consensus 130 ykdr~It~~Lv~raEk~GfkAlvlTvDtP~lG~R~~D~~n~f~lp~~l~lknfe~~~~~~v~~~~~sg~~~~~~~~-id~ 208 (363)
T KOG0538|consen 130 YKDRDITEQLVKRAEKAGFKALVLTVDTPRLGRRESDIKNKFSLPKNLTLKNFEGLKLTEVEEAGDSGLAAYVSSQ-IDP 208 (363)
T ss_pred cCchHHHHHHHHHHHHcCceEEEEEeccccccCchhhhhhcccCCcccccccccccccccCCcccchhhhhhhhcC-CCC
Confidence 4 455566788999999999998865443210000 00 111111 123
Q ss_pred HHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEec--CCcccCCCCcCCcCCCCCccHHH
Q 020423 180 KFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHS--RKALLNGISPAENRTIPPLKYEY 257 (326)
Q Consensus 180 ~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~--~~~~~~g~~~~~~~~~~~~~~~~ 257 (326)
.+-=+-++.+|..+..|+.+|=-.. .++. +...++|++.|+|+. +.+.. -.|...+.
T Consensus 209 Sl~W~Di~wLr~~T~LPIvvKGilt------~eDA-----~~Ave~G~~GIIVSNHGgRQlD----------~vpAtI~~ 267 (363)
T KOG0538|consen 209 SLSWKDIKWLRSITKLPIVVKGVLT------GEDA-----RKAVEAGVAGIIVSNHGGRQLD----------YVPATIEA 267 (363)
T ss_pred CCChhhhHHHHhcCcCCeEEEeecc------cHHH-----HHHHHhCCceEEEeCCCccccC----------cccchHHH
Confidence 3334557778888899999993332 1221 223469999999964 33211 12344677
Q ss_pred HHHHHhcCC-CceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhC
Q 020423 258 YYALLRDFP-DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN 302 (326)
Q Consensus 258 i~~i~~~~~-~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~d 302 (326)
+.++.+.+- ++||..-|||+++.|+.+++..||.+|.+||+++..
T Consensus 268 L~Evv~aV~~ri~V~lDGGVR~G~DVlKALALGAk~VfiGRP~v~g 313 (363)
T KOG0538|consen 268 LPEVVKAVEGRIPVFLDGGVRRGTDVLKALALGAKGVFIGRPIVWG 313 (363)
T ss_pred HHHHHHHhcCceEEEEecCcccchHHHHHHhcccceEEecCchhee
Confidence 777776542 699999999999999999999999999999998743
|
|
| >TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.6e-07 Score=86.02 Aligned_cols=82 Identities=20% Similarity=0.251 Sum_probs=66.4
Q ss_pred HHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHH
Q 020423 219 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRA 298 (326)
Q Consensus 219 a~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRa 298 (326)
++.+++.|+|.++++..+....+ ...+++.++++.+.. ++||++.|||+|.+++++++..||+.|++||+
T Consensus 36 a~~~~~~G~~~l~v~Dl~~~~~~---------~~~n~~~i~~i~~~~-~~pv~~~GGi~s~~d~~~~~~~Ga~~vivgt~ 105 (254)
T TIGR00735 36 AQRYDEEGADELVFLDITASSEG---------RTTMIDVVERTAETV-FIPLTVGGGIKSIEDVDKLLRAGADKVSINTA 105 (254)
T ss_pred HHHHHHcCCCEEEEEcCCccccc---------ChhhHHHHHHHHHhc-CCCEEEECCCCCHHHHHHHHHcCCCEEEEChh
Confidence 45567799999999977642111 224588888888775 89999999999999999999999999999999
Q ss_pred HHhCCchhHHhH
Q 020423 299 AYQNPWYTLGHV 310 (326)
Q Consensus 299 ll~dP~l~~~~i 310 (326)
++.||+++.+..
T Consensus 106 ~~~~p~~~~~~~ 117 (254)
T TIGR00735 106 AVKNPELIYELA 117 (254)
T ss_pred HhhChHHHHHHH
Confidence 999999654443
|
|
| >PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences | Back alignment and domain information |
|---|
Probab=98.59 E-value=2.9e-05 Score=69.01 Aligned_cols=212 Identities=13% Similarity=0.127 Sum_probs=114.3
Q ss_pred cccCeecCCcEEEccCCCCChHH-HHHHHHHcCCCcEEEecceeeccccccccchhhhhh-cCCCCCcEEEEecC-CCHH
Q 020423 61 MVARQYLPPWFSVAPMMDWTDNH-YRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLA-FSPEQHPIVLQIGG-SNLD 137 (326)
Q Consensus 61 ~ig~~~l~nrivlAPM~~~s~~~-~r~~~~~~Gg~gli~te~~~~~~~~~~~~~~~~~~~-~~~~~~piivQL~g-~~~~ 137 (326)
||++.+++.|+++. -..+.+.+ ++....+.| ..++..-. .-..... ....+.+++ +...+..+..|-.| .+.+
T Consensus 1 ki~g~~f~SRL~lG-Tgky~s~~~m~~ai~aSg-~evvTval-RR~~~~~-~~~~~~~~~~i~~~~~~lLPNTaGc~tA~ 76 (247)
T PF05690_consen 1 KIGGKEFRSRLILG-TGKYPSPEVMREAIEASG-AEVVTVAL-RRVNLGS-KPGGDNILDYIDRSGYTLLPNTAGCRTAE 76 (247)
T ss_dssp -ETTEEES-SEEEE--STSSSHHHHHHHHHHTT--SEEEEEC-CGSTTTS--TTCHHCCCCTTCCTSEEEEE-TT-SSHH
T ss_pred CcCCEEeecceEEe-cCCCCCHHHHHHHHHHhC-CcEEEEEE-ecccCCC-CCCCccHHHHhcccCCEECCcCCCCCCHH
Confidence 68999999999884 33454444 455555544 55443322 1111111 011233333 33456667777654 6789
Q ss_pred HHHHHHHHHHHC-CCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHH
Q 020423 138 NLAKATELANAY-NYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 216 (326)
Q Consensus 138 ~f~~aA~~a~~a-G~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~ 216 (326)
+-.+.|+.++|+ |-|+|-|-. ...+. .|+-++-...+..+.+.+. |+-|..-+.. |..
T Consensus 77 EAv~~A~laRe~~~t~wIKLEV-------i~D~~---~L~PD~~etl~Aae~Lv~e-GF~VlPY~~~---------D~v- 135 (247)
T PF05690_consen 77 EAVRTARLAREAFGTNWIKLEV-------IGDDK---TLLPDPIETLKAAEILVKE-GFVVLPYCTD---------DPV- 135 (247)
T ss_dssp HHHHHHHHHHHTTS-SEEEE---------BS-TT---T--B-HHHHHHHHHHHHHT-T-EEEEEE-S----------HH-
T ss_pred HHHHHHHHHHHHcCCCeEEEEE-------eCCCC---CcCCChhHHHHHHHHHHHC-CCEEeecCCC---------CHH-
Confidence 999999999997 467777743 11121 1334444444444443322 5544443222 121
Q ss_pred HHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhh
Q 020423 217 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVG 296 (326)
Q Consensus 217 ~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iG 296 (326)
+++.+++.|+..+---+..- |. .....+...++.++++. ++|||.-+||.+++|+.++++.|||+|.+.
T Consensus 136 -~akrL~d~GcaavMPlgsPI---GS------g~Gi~n~~~l~~i~~~~-~vPvIvDAGiG~pSdaa~AMElG~daVLvN 204 (247)
T PF05690_consen 136 -LAKRLEDAGCAAVMPLGSPI---GS------GRGIQNPYNLRIIIERA-DVPVIVDAGIGTPSDAAQAMELGADAVLVN 204 (247)
T ss_dssp -HHHHHHHTT-SEBEEBSSST---TT---------SSTHHHHHHHHHHG-SSSBEEES---SHHHHHHHHHTT-SEEEES
T ss_pred -HHHHHHHCCCCEEEeccccc---cc------CcCCCCHHHHHHHHHhc-CCcEEEeCCCCCHHHHHHHHHcCCceeehh
Confidence 46778899998875433211 10 00112345566677666 999999999999999999999999999999
Q ss_pred HHHHh--CCchhHH
Q 020423 297 RAAYQ--NPWYTLG 308 (326)
Q Consensus 297 Rall~--dP~l~~~ 308 (326)
+++-. ||-.+.+
T Consensus 205 TAiA~A~dPv~MA~ 218 (247)
T PF05690_consen 205 TAIAKAKDPVAMAR 218 (247)
T ss_dssp HHHHTSSSHHHHHH
T ss_pred hHHhccCCHHHHHH
Confidence 99875 4554433
|
ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C. |
| >CHL00162 thiG thiamin biosynthesis protein G; Validated | Back alignment and domain information |
|---|
Probab=98.58 E-value=2e-05 Score=70.76 Aligned_cols=213 Identities=10% Similarity=0.044 Sum_probs=120.9
Q ss_pred CCccccccCeecCCcEEEccCCCCChHH-HHHHHHHcCCCcEEEecceeeccccccccchhhhhh-cCCCCCcEEEEec-
Q 020423 56 HTKAEMVARQYLPPWFSVAPMMDWTDNH-YRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLA-FSPEQHPIVLQIG- 132 (326)
Q Consensus 56 l~~p~~ig~~~l~nrivlAPM~~~s~~~-~r~~~~~~Gg~gli~te~~~~~~~~~~~~~~~~~~~-~~~~~~piivQL~- 132 (326)
..++++|++.+++.|+++. -..+.+.. +....++.| +.++..-.=..+ . ......+.+++ +...+..+..|-.
T Consensus 4 ~~d~l~i~g~~f~SRL~lG-Tgky~s~~~~~~ai~aSg-~evvTvalRR~~-~-~~~~~~~~~l~~i~~~~~~~LPNTaG 79 (267)
T CHL00162 4 MTDKLKIGNKSFNSRLMLG-TGKYKSLKDAIQSIEASG-CEIVTVAIRRLN-N-NLLNDNSNLLNGLDWNKLWLLPNTAG 79 (267)
T ss_pred CCCceEECCEEeecceEEe-cCCCCCHHHHHHHHHHhC-CcEEEEEEEEec-c-CcCCCcchHHHhhchhccEECCcCcC
Confidence 3478999999999999883 33454444 445555544 555433321111 1 10011122222 2223333444443
Q ss_pred CCCHHHHHHHHHHHHHCC-------CCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCC
Q 020423 133 GSNLDNLAKATELANAYN-------YDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGV 205 (326)
Q Consensus 133 g~~~~~f~~aA~~a~~aG-------~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~ 205 (326)
+.+.++-.+.|+.++|++ -|+|-|-. ...+. .|+-++-...+..+.+.+. |+-|..-+..
T Consensus 80 c~tA~EAv~~A~laRe~~~~~~~~~~~wIKLEV-------i~D~~---~LlPD~~etl~Aae~Lv~e-GF~VlPY~~~-- 146 (267)
T CHL00162 80 CQTAEEAIRMAFLGRELAKQLGQEDNNFVKLEV-------ISDPK---YLLPDPIGTLKAAEFLVKK-GFTVLPYINA-- 146 (267)
T ss_pred CCCHHHHHHHHHHHHHHhccccccCCCeEEEEE-------eCCCc---ccCCChHHHHHHHHHHHHC-CCEEeecCCC--
Confidence 467899999999999975 56666542 11111 1334444333333333221 4444332111
Q ss_pred CCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHH
Q 020423 206 DDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAA 285 (326)
Q Consensus 206 ~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~ 285 (326)
+. .+++.+++.|+..+--=+..- |.. . ...+...++.+++. +++||+.-+||.+++|+..+
T Consensus 147 ----D~-----v~a~rLed~Gc~aVMPlgsPI---GSg----~--Gl~n~~~l~~i~e~-~~vpVivdAGIgt~sDa~~A 207 (267)
T CHL00162 147 ----DP-----MLAKHLEDIGCATVMPLGSPI---GSG----Q--GLQNLLNLQIIIEN-AKIPVIIDAGIGTPSEASQA 207 (267)
T ss_pred ----CH-----HHHHHHHHcCCeEEeeccCcc---cCC----C--CCCCHHHHHHHHHc-CCCcEEEeCCcCCHHHHHHH
Confidence 11 146788999998875322110 100 0 11123445555554 58999999999999999999
Q ss_pred HHhCCChhhhhHHHHhCCc
Q 020423 286 LRKGAHHVMVGRAAYQNPW 304 (326)
Q Consensus 286 l~~GaD~V~iGRall~dP~ 304 (326)
++.|||+|.+.+++..-++
T Consensus 208 mElGaDgVL~nSaIakA~d 226 (267)
T CHL00162 208 MELGASGVLLNTAVAQAKN 226 (267)
T ss_pred HHcCCCEEeecceeecCCC
Confidence 9999999999999986544
|
|
| >TIGR00262 trpA tryptophan synthase, alpha subunit | Back alignment and domain information |
|---|
Probab=98.58 E-value=3.8e-06 Score=76.91 Aligned_cols=168 Identities=14% Similarity=0.190 Sum_probs=96.1
Q ss_pred EEEEec--CCCHHHHHHHHHHHHHCCCCEEEecCC--CCCCc---cc----CCCCccccccCCHHHHHHHHHHHHhc-CC
Q 020423 127 IVLQIG--GSNLDNLAKATELANAYNYDEINLNCG--CPSPK---VA----GHGCFGVSLMLDPKFVGEAMSVIAAN-TN 194 (326)
Q Consensus 127 iivQL~--g~~~~~f~~aA~~a~~aG~d~Iein~g--~P~~~---~~----r~d~yGgsl~~r~~~l~eiv~avr~~-~~ 194 (326)
++.=+. -.+.+.+.+.++.+.+.|+|.|||-+- -|... ++ |.=+-| -+.+.+.++++++|+. .+
T Consensus 12 li~y~~aG~P~~~~~~~~~~~l~~~Gad~iElGiPfsDP~aDGpvIq~a~~~al~~G----~~~~~~~~~v~~ir~~~~~ 87 (256)
T TIGR00262 12 FIPFVTAGDPTLETSLEIIKTLIEAGADALELGVPFSDPLADGPTIQAADLRALRAG----MTPEKCFELLKKVRQKHPN 87 (256)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCcCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHhcCCC
Confidence 444443 347788999999999999999999653 23210 00 100012 3456788999999976 68
Q ss_pred CcEEEEeccCC------CC----------------CccHHHHHHHHHHHhhhCCccEEEE-ecCCc--------------
Q 020423 195 VPVSVKCRIGV------DD----------------HDSYNQLCDFIYKVSSLSPTRHFII-HSRKA-------------- 237 (326)
Q Consensus 195 ~pv~vK~r~g~------~~----------------~~~~~e~~~~ia~~le~~Gvd~I~v-~~~~~-------------- 237 (326)
.|+..=.-.+. +. ....++..+ +...+.+.|++.+.+ ...+.
T Consensus 88 ~plv~m~Y~Npi~~~G~e~f~~~~~~aGvdgviipDlp~ee~~~-~~~~~~~~gl~~i~lv~P~T~~eri~~i~~~~~gf 166 (256)
T TIGR00262 88 IPIGLLTYYNLIFRKGVEEFYAKCKEVGVDGVLVADLPLEESGD-LVEAAKKHGVKPIFLVAPNADDERLKQIAEKSQGF 166 (256)
T ss_pred CCEEEEEeccHHhhhhHHHHHHHHHHcCCCEEEECCCChHHHHH-HHHHHHHCCCcEEEEECCCCCHHHHHHHHHhCCCC
Confidence 88652111110 00 001112211 112223344443321 11110
Q ss_pred -c---cCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHh
Q 020423 238 -L---LNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 301 (326)
Q Consensus 238 -~---~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~ 301 (326)
+ ..|.++.. ....+...+.++++++. .+.||+..|||++++++.++.+.|||+|.+|++++.
T Consensus 167 iy~vs~~G~TG~~-~~~~~~~~~~i~~lr~~-~~~pi~vgfGI~~~e~~~~~~~~GADgvVvGSaiv~ 232 (256)
T TIGR00262 167 VYLVSRAGVTGAR-NRAASALNELVKRLKAY-SAKPVLVGFGISKPEQVKQAIDAGADGVIVGSAIVK 232 (256)
T ss_pred EEEEECCCCCCCc-ccCChhHHHHHHHHHhh-cCCCEEEeCCCCCHHHHHHHHHcCCCEEEECHHHHH
Confidence 0 01222211 01222335667777665 488999999999999999999999999999999975
|
Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences. |
| >TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase | Back alignment and domain information |
|---|
Probab=98.57 E-value=2.3e-06 Score=75.57 Aligned_cols=43 Identities=16% Similarity=0.292 Sum_probs=37.6
Q ss_pred ccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhh
Q 020423 253 LKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVG 296 (326)
Q Consensus 253 ~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iG 296 (326)
.+.+.+.++++.. ++|++..|||+++++++++++.|||.|.+|
T Consensus 163 v~~e~i~~Vk~~~-~~Pv~vGGGIrs~e~a~~l~~~GAD~VVVG 205 (205)
T TIGR01769 163 VNPETISLVKKAS-GIPLIVGGGIRSPEIAYEIVLAGADAIVTG 205 (205)
T ss_pred CCHHHHHHHHHhh-CCCEEEeCCCCCHHHHHHHHHcCCCEEEeC
Confidence 3467787777665 999999999999999999999999999886
|
This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum. |
| >TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.2e-06 Score=83.87 Aligned_cols=141 Identities=15% Similarity=0.149 Sum_probs=84.2
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHH
Q 020423 135 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQL 214 (326)
Q Consensus 135 ~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~ 214 (326)
+++.+.+.++.+.++|+|.|.+|.-. +..+|.+. ..++..+.++++ ..++||.++ + ..+.++.
T Consensus 140 ~~~~~~e~a~~l~eAGad~I~ihgrt------~~q~~~sg-~~~p~~l~~~i~----~~~IPVI~G---~---V~t~e~A 202 (369)
T TIGR01304 140 SPQNAREIAPIVVKAGADLLVIQGTL------VSAEHVST-SGEPLNLKEFIG----ELDVPVIAG---G---VNDYTTA 202 (369)
T ss_pred CCcCHHHHHHHHHHCCCCEEEEeccc------hhhhccCC-CCCHHHHHHHHH----HCCCCEEEe---C---CCCHHHH
Confidence 34567788888999999999998521 22334111 124554444443 357898762 1 1233332
Q ss_pred HHHHHHHhhhCCccEEEEecC-CcccCCCCcCCcCCCCCccHHHHHHHH---h----cCC--CceEEEeCCCCCHHHHHH
Q 020423 215 CDFIYKVSSLSPTRHFIIHSR-KALLNGISPAENRTIPPLKYEYYYALL---R----DFP--DLTFTLNGGINTVDEVNA 284 (326)
Q Consensus 215 ~~~ia~~le~~Gvd~I~v~~~-~~~~~g~~~~~~~~~~~~~~~~i~~i~---~----~~~--~iPVIa~GgI~s~~da~~ 284 (326)
.+++ +.|+|.|.+..+ ........+ ...+. ...+.++. + +.. .+|||+.|||.+..|+.+
T Consensus 203 ----~~~~-~aGaDgV~~G~gg~~~~~~~lg---~~~p~--~~ai~d~~~a~~~~~~e~g~r~vpVIAdGGI~tg~di~k 272 (369)
T TIGR01304 203 ----LHLM-RTGAAGVIVGPGGANTTRLVLG---IEVPM--ATAIADVAAARRDYLDETGGRYVHVIADGGIETSGDLVK 272 (369)
T ss_pred ----HHHH-HcCCCEEEECCCCCcccccccC---CCCCH--HHHHHHHHHHHHHHHHhcCCCCceEEEeCCCCCHHHHHH
Confidence 2233 489999984211 111000000 01121 22333222 1 221 399999999999999999
Q ss_pred HHHhCCChhhhhHHHHhC
Q 020423 285 ALRKGAHHVMVGRAAYQN 302 (326)
Q Consensus 285 ~l~~GaD~V~iGRall~d 302 (326)
++..|||+||+|++++.-
T Consensus 273 AlAlGAdaV~iGt~~a~a 290 (369)
T TIGR01304 273 AIACGADAVVLGSPLARA 290 (369)
T ss_pred HHHcCCCEeeeHHHHHhh
Confidence 999999999999999863
|
This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302. |
| >PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.5e-06 Score=79.25 Aligned_cols=160 Identities=14% Similarity=0.152 Sum_probs=103.6
Q ss_pred CcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHH-HhcCCCcEEEEec-
Q 020423 125 HPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVI-AANTNVPVSVKCR- 202 (326)
Q Consensus 125 ~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~av-r~~~~~pv~vK~r- 202 (326)
.++-+|+.|--. . +.++++-++|++-|-|+...- .+++ -+|+++.++++.. .+.+-+.+.+|..
T Consensus 82 ~~~~vqvGGGIR--~-e~i~~~l~~Ga~rViigT~Av-----~~~~------~~p~~v~~~~~~~G~~~IvvsiD~k~~~ 147 (262)
T PLN02446 82 YPGGLQVGGGVN--S-ENAMSYLDAGASHVIVTSYVF-----RDGQ------IDLERLKDLVRLVGKQRLVLDLSCRKKD 147 (262)
T ss_pred CCCCEEEeCCcc--H-HHHHHHHHcCCCEEEEchHHH-----hCCC------CCHHHHHHHHHHhCCCCEEEEEEEEecC
Confidence 347789987553 3 788888999999999963211 1111 2599999999987 4433333444411
Q ss_pred -------cCCCCCccHHHHHHHHHHHhhhCCccEEEEecC--CcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEe
Q 020423 203 -------IGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSR--KALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLN 273 (326)
Q Consensus 203 -------~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~--~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~ 273 (326)
-||.+.... ++.+++.+. ++.|+..|.++.- +.+..| .+++++.++.+. +++|||++
T Consensus 148 g~~~Va~~GW~~~t~~-~~~e~~~~~-~~~g~~eii~TdI~rDGtl~G-----------~d~el~~~l~~~-~~ipVIAS 213 (262)
T PLN02446 148 GRYYVVTDRWQKFSDL-AVDEETLEF-LAAYCDEFLVHGVDVEGKRLG-----------IDEELVALLGEH-SPIPVTYA 213 (262)
T ss_pred CCEEEEECCCcccCCC-CHHHHHHHH-HHhCCCEEEEEEEcCCCcccC-----------CCHHHHHHHHhh-CCCCEEEE
Confidence 244442221 223333333 4578999988743 322222 347888888776 59999999
Q ss_pred CCCCCHHHHHHHHHh--CCChhhhhHHH--HhCCchhHHhHHHh
Q 020423 274 GGINTVDEVNAALRK--GAHHVMVGRAA--YQNPWYTLGHVDTA 313 (326)
Q Consensus 274 GgI~s~~da~~~l~~--GaD~V~iGRal--l~dP~l~~~~i~~~ 313 (326)
|||.+.+|+.++.+. |..+|.+|+|+ +..- +-++.+.++
T Consensus 214 GGv~sleDi~~L~~~g~g~~gvIvGkAl~~y~g~-~~l~ea~~~ 256 (262)
T PLN02446 214 GGVRSLDDLERVKVAGGGRVDVTVGSALDIFGGN-LPYDDVVAW 256 (262)
T ss_pred CCCCCHHHHHHHHHcCCCCEEEEEEeeHHHhCCC-ccHHHHHHH
Confidence 999999999999985 68899999999 4433 344444443
|
|
| >PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.7e-06 Score=75.56 Aligned_cols=154 Identities=15% Similarity=0.111 Sum_probs=101.5
Q ss_pred CCCcEEEEecCCCHHHHHHHHHHHHHCCCCEEEe-cCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC-CCcEEEE
Q 020423 123 EQHPIVLQIGGSNLDNLAKATELANAYNYDEINL-NCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVK 200 (326)
Q Consensus 123 ~~~piivQL~g~~~~~f~~aA~~a~~aG~d~Iei-n~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~-~~pv~vK 200 (326)
.+-|+.|+ .-+|+.|..+. ++|+|.||| |+.|-+.. .|. -..+.+.++.++.|+-. +.+++|-
T Consensus 60 s~lPICVS--aVep~~f~~aV----~AGAdliEIGNfDsFY~q-Gr~--------f~a~eVL~Lt~~tR~LLP~~~LsVT 124 (242)
T PF04481_consen 60 SNLPICVS--AVEPELFVAAV----KAGADLIEIGNFDSFYAQ-GRR--------FSAEEVLALTRETRSLLPDITLSVT 124 (242)
T ss_pred CCCCeEee--cCCHHHHHHHH----HhCCCEEEecchHHHHhc-CCe--------ecHHHHHHHHHHHHHhCCCCceEEe
Confidence 56688776 35888888765 589999999 66666543 111 23677888888888866 6778776
Q ss_pred eccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccC---CCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCC
Q 020423 201 CRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLN---GISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGIN 277 (326)
Q Consensus 201 ~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~---g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~ 277 (326)
+..-. .+++-.+ ++..|++.|+|.|.-.|++.... |..+.-.... ..+...+++.+. +++||+.+-|+
T Consensus 125 VPHiL----~ld~Qv~-LA~~L~~~GaDiIQTEGgtss~p~~~g~lglIekaa--pTLAaay~ISr~-v~iPVlcASGl- 195 (242)
T PF04481_consen 125 VPHIL----PLDQQVQ-LAEDLVKAGADIIQTEGGTSSKPTSPGILGLIEKAA--PTLAAAYAISRA-VSIPVLCASGL- 195 (242)
T ss_pred cCccc----cHHHHHH-HHHHHHHhCCcEEEcCCCCCCCCCCcchHHHHHHHh--HHHHHHHHHHhc-cCCceEeccCc-
Confidence 54432 2233333 56677899999999888764211 1110000000 113344556655 59999999999
Q ss_pred CHHHHHHHHHhCCChhhhhHHHH
Q 020423 278 TVDEVNAALRKGAHHVMVGRAAY 300 (326)
Q Consensus 278 s~~da~~~l~~GaD~V~iGRall 300 (326)
|.-.+--++..||.+|.+|++.=
T Consensus 196 S~vT~PmAiaaGAsGVGVGSavn 218 (242)
T PF04481_consen 196 SAVTAPMAIAAGASGVGVGSAVN 218 (242)
T ss_pred chhhHHHHHHcCCcccchhHHhh
Confidence 45567888899999999999974
|
As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis. |
| >PRK08649 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.2e-06 Score=84.20 Aligned_cols=144 Identities=15% Similarity=0.133 Sum_probs=86.4
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHH
Q 020423 135 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQL 214 (326)
Q Consensus 135 ~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~ 214 (326)
+++++.+.++.+.++|+|.|.+|.... ...|+++- .++..+.++++. .++||.++ + ..+.++.
T Consensus 139 ~~~~~~e~a~~l~eaGvd~I~vhgrt~------~~~h~~~~-~~~~~i~~~ik~----~~ipVIaG---~---V~t~e~A 201 (368)
T PRK08649 139 SPQRAQELAPTVVEAGVDLFVIQGTVV------SAEHVSKE-GEPLNLKEFIYE----LDVPVIVG---G---CVTYTTA 201 (368)
T ss_pred CCcCHHHHHHHHHHCCCCEEEEeccch------hhhccCCc-CCHHHHHHHHHH----CCCCEEEe---C---CCCHHHH
Confidence 445677888888999999999996422 12243221 134444444333 47888762 1 1233322
Q ss_pred HHHHHHHhhhCCccEEEEecCCcccCCCCcC--CcCCCCCccHHHHHHHH---hcC------CCceEEEeCCCCCHHHHH
Q 020423 215 CDFIYKVSSLSPTRHFIIHSRKALLNGISPA--ENRTIPPLKYEYYYALL---RDF------PDLTFTLNGGINTVDEVN 283 (326)
Q Consensus 215 ~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~--~~~~~~~~~~~~i~~i~---~~~------~~iPVIa~GgI~s~~da~ 283 (326)
.++ .++|+|.|.+. +.... +.... .....+. ...+.+.. +++ .++|||+.|||.+..|+.
T Consensus 202 ----~~l-~~aGAD~V~VG-~G~Gs-~~~t~~~~g~g~p~--~~ai~~~~~a~~~~l~~~~~~~vpVIAdGGI~~~~dia 272 (368)
T PRK08649 202 ----LHL-MRTGAAGVLVG-IGPGA-ACTSRGVLGIGVPM--ATAIADVAAARRDYLDETGGRYVHVIADGGIGTSGDIA 272 (368)
T ss_pred ----HHH-HHcCCCEEEEC-CCCCc-CCCCcccCCCCcCH--HHHHHHHHHHHHHhhhhhcCCCCeEEEeCCCCCHHHHH
Confidence 223 35999999774 32210 11100 0001121 33333332 111 159999999999999999
Q ss_pred HHHHhCCChhhhhHHHHhCCc
Q 020423 284 AALRKGAHHVMVGRAAYQNPW 304 (326)
Q Consensus 284 ~~l~~GaD~V~iGRall~dP~ 304 (326)
+++..|||+||+|+.|....+
T Consensus 273 kAlalGAd~Vm~Gs~fa~t~E 293 (368)
T PRK08649 273 KAIACGADAVMLGSPLARAAE 293 (368)
T ss_pred HHHHcCCCeecccchhccccc
Confidence 999999999999999987554
|
|
| >PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=2.9e-06 Score=76.69 Aligned_cols=144 Identities=16% Similarity=0.219 Sum_probs=91.0
Q ss_pred EEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEe----c
Q 020423 127 IVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKC----R 202 (326)
Q Consensus 127 iivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~----r 202 (326)
+-+|+.|. ...+ +.++.+.++|++-|-++ +...++|+++.++.+..-+.+-+.+.+|- .
T Consensus 77 ~pi~vGGG-Irs~-e~v~~~l~~Ga~kvvig---------------t~a~~~~~~l~~~~~~fg~~ivvslD~~~g~v~~ 139 (234)
T PRK13587 77 KDIEVGGG-IRTK-SQIMDYFAAGINYCIVG---------------TKGIQDTDWLKEMAHTFPGRIYLSVDAYGEDIKV 139 (234)
T ss_pred CeEEEcCC-cCCH-HHHHHHHHCCCCEEEEC---------------chHhcCHHHHHHHHHHcCCCEEEEEEeeCCEEEe
Confidence 34777652 2222 23555667899988764 22336799999988876322111222221 1
Q ss_pred cCCCCCccHHHHHHHHHHHhhhCCccEEEEecCC--cccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHH
Q 020423 203 IGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRK--ALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVD 280 (326)
Q Consensus 203 ~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~--~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~ 280 (326)
.+|.+.... ++.++ .+.+++.|+..+.+..-. ....| .+++.+.++.+. +++||+++|||.+.+
T Consensus 140 ~gw~~~~~~-~~~~~-~~~~~~~g~~~ii~tdi~~dGt~~G-----------~~~~li~~l~~~-~~ipvi~~GGi~s~e 205 (234)
T PRK13587 140 NGWEEDTEL-NLFSF-VRQLSDIPLGGIIYTDIAKDGKMSG-----------PNFELTGQLVKA-TTIPVIASGGIRHQQ 205 (234)
T ss_pred cCCcccCCC-CHHHH-HHHHHHcCCCEEEEecccCcCCCCc-----------cCHHHHHHHHHh-CCCCEEEeCCCCCHH
Confidence 234332211 12232 334567898888776432 22222 347778888766 489999999999999
Q ss_pred HHHHHHHhCCChhhhhHHHHh
Q 020423 281 EVNAALRKGAHHVMVGRAAYQ 301 (326)
Q Consensus 281 da~~~l~~GaD~V~iGRall~ 301 (326)
|+.++++.|+++|.+|++++.
T Consensus 206 di~~l~~~G~~~vivG~a~~~ 226 (234)
T PRK13587 206 DIQRLASLNVHAAIIGKAAHQ 226 (234)
T ss_pred HHHHHHHcCCCEEEEhHHHHh
Confidence 999999999999999999987
|
|
| >TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=98.43 E-value=4.7e-06 Score=82.64 Aligned_cols=132 Identities=15% Similarity=0.113 Sum_probs=88.6
Q ss_pred HHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC-CCcEEEEeccCCCCCccHHHHHH
Q 020423 138 NLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCD 216 (326)
Q Consensus 138 ~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~-~~pv~vK~r~g~~~~~~~~e~~~ 216 (326)
+..+-++.+.++|.|.|-|-... .+++.+.++++.|++.. +.|+.+. +..+.++.
T Consensus 225 ~~~~ra~~Lv~aGVd~i~~D~a~----------------g~~~~~~~~i~~i~~~~~~~~vi~g------~~~t~~~~-- 280 (475)
T TIGR01303 225 DVGGKAKALLDAGVDVLVIDTAH----------------GHQVKMISAIKAVRALDLGVPIVAG------NVVSAEGV-- 280 (475)
T ss_pred cHHHHHHHHHHhCCCEEEEeCCC----------------CCcHHHHHHHHHHHHHCCCCeEEEe------ccCCHHHH--
Confidence 34456666777899998885432 13578899999999875 7888872 22333332
Q ss_pred HHHHHhhhCCccEEEEecCCc---ccCCCCcCCcCCCCCccHHHHH---HHHhcCCCceEEEeCCCCCHHHHHHHHHhCC
Q 020423 217 FIYKVSSLSPTRHFIIHSRKA---LLNGISPAENRTIPPLKYEYYY---ALLRDFPDLTFTLNGGINTVDEVNAALRKGA 290 (326)
Q Consensus 217 ~ia~~le~~Gvd~I~v~~~~~---~~~g~~~~~~~~~~~~~~~~i~---~i~~~~~~iPVIa~GgI~s~~da~~~l~~Ga 290 (326)
+.+.++|+|.|.|.++.. ..++..+. ..++ ...+. +..++. ++|||+.|||.++.|+.+++..||
T Consensus 281 ---~~l~~~G~d~i~vg~g~Gs~~ttr~~~~~---g~~~--~~a~~~~~~~~~~~-~~~viadGgi~~~~di~kala~GA 351 (475)
T TIGR01303 281 ---RDLLEAGANIIKVGVGPGAMCTTRMMTGV---GRPQ--FSAVLECAAEARKL-GGHVWADGGVRHPRDVALALAAGA 351 (475)
T ss_pred ---HHHHHhCCCEEEECCcCCccccCccccCC---CCch--HHHHHHHHHHHHHc-CCcEEEeCCCCCHHHHHHHHHcCC
Confidence 234569999999875532 11222110 1122 22222 223444 899999999999999999999999
Q ss_pred ChhhhhHHHHhC
Q 020423 291 HHVMVGRAAYQN 302 (326)
Q Consensus 291 D~V~iGRall~d 302 (326)
|.||+|+.|-..
T Consensus 352 ~~vm~g~~~ag~ 363 (475)
T TIGR01303 352 SNVMVGSWFAGT 363 (475)
T ss_pred CEEeechhhccc
Confidence 999999988643
|
This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302. |
| >TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase | Back alignment and domain information |
|---|
Probab=98.42 E-value=3.3e-06 Score=76.76 Aligned_cols=145 Identities=14% Similarity=0.163 Sum_probs=93.1
Q ss_pred cEEEEecC--CCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEe--
Q 020423 126 PIVLQIGG--SNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKC-- 201 (326)
Q Consensus 126 piivQL~g--~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~-- 201 (326)
++-+|+.| .+.+ .++.+.++|+|-|-++. ....+|+++.++.+...+.+-+.+.+|.
T Consensus 74 ~~~v~vgGGIrs~e----~~~~~l~~Ga~~vvigT---------------~a~~~p~~~~~~~~~~g~~ivvslD~k~~g 134 (243)
T TIGR01919 74 VVVEELSGGRRDDS----SLRAALTGGRARVNGGT---------------AALENPWWAAAVIRYGGDIVAVGLDVLEDG 134 (243)
T ss_pred CCCEEEcCCCCCHH----HHHHHHHcCCCEEEECc---------------hhhCCHHHHHHHHHHccccEEEEEEEecCC
Confidence 35678865 2333 34455668999887742 2235789999888776433222333331
Q ss_pred ------ccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCC--cccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEe
Q 020423 202 ------RIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRK--ALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLN 273 (326)
Q Consensus 202 ------r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~--~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~ 273 (326)
..||.+ .. .++.++ .+.+++.|+..|.++.-. ....| .+++++.++.+. +++|||++
T Consensus 135 ~~~~v~~~Gw~~-~~-~~~~~~-~~~~~~~g~~~ii~tdI~~dGt~~G-----------~d~~l~~~l~~~-~~~pvias 199 (243)
T TIGR01919 135 EWHTLGNRGWSD-GG-GDLEVL-ERLLDSGGCSRVVVTDSKKDGLSGG-----------PNELLLEVVAAR-TDAIVAAS 199 (243)
T ss_pred ceEEEECCCeec-CC-CcHHHH-HHHHHhCCCCEEEEEecCCcccCCC-----------cCHHHHHHHHhh-CCCCEEEE
Confidence 113433 11 123333 345578999999887543 22222 347777777766 59999999
Q ss_pred CCCCCHHHHHHHHH---hCCChhhhhHHHHhCCc
Q 020423 274 GGINTVDEVNAALR---KGAHHVMVGRAAYQNPW 304 (326)
Q Consensus 274 GgI~s~~da~~~l~---~GaD~V~iGRall~dP~ 304 (326)
|||.+.+|+.++.+ .|+++|.+|++++..--
T Consensus 200 GGv~s~eDl~~l~~l~~~Gv~gvivg~Al~~g~i 233 (243)
T TIGR01919 200 GGSSLLDDLRAIKYLDEGGVSVAIGGKLLYARFF 233 (243)
T ss_pred CCcCCHHHHHHHHhhccCCeeEEEEhHHHHcCCC
Confidence 99999999998753 58999999999987643
|
This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent. |
| >KOG1606 consensus Stationary phase-induced protein, SOR/SNZ family [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.42 E-value=4e-07 Score=78.96 Aligned_cols=163 Identities=16% Similarity=0.167 Sum_probs=97.9
Q ss_pred HHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHH
Q 020423 140 AKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIY 219 (326)
Q Consensus 140 ~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia 219 (326)
.+.|+.++++|+..|-.--.-|.. .|..+ |-.-+.+|+.+.||. +++.+|+..|.|+|... + +
T Consensus 31 ~eQA~iAE~aGACaVmalervPad--iR~~G-gV~RMsDP~mIKei~----~aVsiPVMAk~RiGHFV--------E--A 93 (296)
T KOG1606|consen 31 AEQARIAEEAGACAVMALERVPAD--IRAQG-GVARMSDPRMIKEIK----NAVSIPVMAKVRIGHFV--------E--A 93 (296)
T ss_pred HHHHHHHHhcCcceEeeeccCCHh--HHhcC-CeeecCCHHHHHHHH----Hhccchhhhhhhhhhhh--------H--H
Confidence 356788999998777665445653 23222 556778888766665 45689999999997321 1 4
Q ss_pred HHhhhCCccEEEEec------CCc------------------------------c--cCCCCcCCc--------------
Q 020423 220 KVSSLSPTRHFIIHS------RKA------------------------------L--LNGISPAEN-------------- 247 (326)
Q Consensus 220 ~~le~~Gvd~I~v~~------~~~------------------------------~--~~g~~~~~~-------------- 247 (326)
+++|..|+|||+=+. ++. + ..|..+...
T Consensus 94 QIlE~l~vDYiDESEvlt~AD~~hhI~KhnFkvPFvCG~rdlGEALRRI~EGAAMIRtkGeagTG~v~EaVkhvr~i~ge 173 (296)
T KOG1606|consen 94 QILEALGVDYIDESEVLTPADWDHHIEKHNFKVPFVCGCRDLGEALRRIREGAAMIRTKGEAGTGDVSEAVKHVRSINGE 173 (296)
T ss_pred HHHHHhccCccchhhhcccccccchhhhhcCcCceeeccccHHHHHHHHhhchhhheeccccCCCcHHHHHHHHHHHHHH
Confidence 566777777775210 000 0 001000000
Q ss_pred ---------CCCC------CccHHHHHHHHhcCCCceE--EEeCCCCCHHHHHHHHHhCCChhhhhHHHHhCCc--hhHH
Q 020423 248 ---------RTIP------PLKYEYYYALLRDFPDLTF--TLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW--YTLG 308 (326)
Q Consensus 248 ---------~~~~------~~~~~~i~~i~~~~~~iPV--Ia~GgI~s~~da~~~l~~GaD~V~iGRall~dP~--l~~~ 308 (326)
..+. ...++++++..+. .++|| +++|||.||.|+.-+++.|||+|.+|++.+..++ --.+
T Consensus 174 ir~~~~m~~dev~t~Ak~i~aP~dLv~~t~q~-GrlPVV~FAaGGvaTPADAALmMQLGCdGVFVGSgiFks~dP~k~a~ 252 (296)
T KOG1606|consen 174 IRVLKNMDDDEVFTFAKEIAAPYDLVKQTKQL-GRLPVVNFAAGGVATPADAALMMQLGCDGVFVGSGIFKSGDPVKRAR 252 (296)
T ss_pred HHHHHcCCHHHHHHHHHHhcCcHHHHHHHHHc-CCCceEEecccCcCChhHHHHHHHcCCCeEEeccccccCCCHHHHHH
Confidence 0000 0012333333333 47888 6899999999999999999999999999997655 3344
Q ss_pred hHHHhhhCCCCC
Q 020423 309 HVDTAIYGAPSS 320 (326)
Q Consensus 309 ~i~~~~~~~~~~ 320 (326)
.|.....+..+|
T Consensus 253 aiVqAvthy~dp 264 (296)
T KOG1606|consen 253 AIVQAVTHYDDP 264 (296)
T ss_pred HHHHHHHccCCH
Confidence 455555444443
|
|
| >PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes | Back alignment and domain information |
|---|
Probab=98.41 E-value=3.2e-06 Score=76.25 Aligned_cols=143 Identities=16% Similarity=0.262 Sum_probs=91.6
Q ss_pred EEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHh-cCCCcEEEEec---
Q 020423 127 IVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAA-NTNVPVSVKCR--- 202 (326)
Q Consensus 127 iivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~-~~~~pv~vK~r--- 202 (326)
+-+|+.|-- .. .+.++.+.++|++-|-++ +...++++++.++.+..-. .+-+.+.+|-.
T Consensus 74 ~~i~vgGGI-rs-~ed~~~ll~~Ga~~Vvig---------------t~~~~~~~~l~~~~~~~g~~~ivvslD~~~g~~v 136 (229)
T PF00977_consen 74 IPIQVGGGI-RS-IEDAERLLDAGADRVVIG---------------TEALEDPELLEELAERYGSQRIVVSLDARDGYKV 136 (229)
T ss_dssp SEEEEESSE--S-HHHHHHHHHTT-SEEEES---------------HHHHHCCHHHHHHHHHHGGGGEEEEEEEEETEEE
T ss_pred ccEEEeCcc-Cc-HHHHHHHHHhCCCEEEeC---------------hHHhhchhHHHHHHHHcCcccEEEEEEeeeceEE
Confidence 667776531 11 233455666888877774 3344779999999888755 32223333321
Q ss_pred --cCCCCC--ccHHHHHHHHHHHhhhCCccEEEEecCCc--ccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCC
Q 020423 203 --IGVDDH--DSYNQLCDFIYKVSSLSPTRHFIIHSRKA--LLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 276 (326)
Q Consensus 203 --~g~~~~--~~~~e~~~~ia~~le~~Gvd~I~v~~~~~--~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI 276 (326)
.+|.+. .++.+++ +.+++.|+..+.++.-.. ...| .+++.+.++.+.. ++|||++|||
T Consensus 137 ~~~gw~~~~~~~~~~~~----~~~~~~g~~~ii~tdi~~dGt~~G-----------~d~~~~~~l~~~~-~~~viasGGv 200 (229)
T PF00977_consen 137 ATNGWQESSGIDLEEFA----KRLEELGAGEIILTDIDRDGTMQG-----------PDLELLKQLAEAV-NIPVIASGGV 200 (229)
T ss_dssp EETTTTEEEEEEHHHHH----HHHHHTT-SEEEEEETTTTTTSSS-------------HHHHHHHHHHH-SSEEEEESS-
T ss_pred EecCccccCCcCHHHHH----HHHHhcCCcEEEEeeccccCCcCC-----------CCHHHHHHHHHHc-CCCEEEecCC
Confidence 134432 2344443 345678999998875432 2222 3478888887776 9999999999
Q ss_pred CCHHHHHHHHHhCCChhhhhHHHHhC
Q 020423 277 NTVDEVNAALRKGAHHVMVGRAAYQN 302 (326)
Q Consensus 277 ~s~~da~~~l~~GaD~V~iGRall~d 302 (326)
.+.+|+.++.+.|+|+|.+|++++..
T Consensus 201 ~~~~Dl~~l~~~G~~gvivg~al~~g 226 (229)
T PF00977_consen 201 RSLEDLRELKKAGIDGVIVGSALHEG 226 (229)
T ss_dssp -SHHHHHHHHHTTECEEEESHHHHTT
T ss_pred CCHHHHHHHHHCCCcEEEEehHhhCC
Confidence 99999999999999999999999753
|
Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F .... |
| >COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.40 E-value=1.1e-06 Score=77.52 Aligned_cols=90 Identities=20% Similarity=0.299 Sum_probs=70.4
Q ss_pred HHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhH
Q 020423 218 IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGR 297 (326)
Q Consensus 218 ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGR 297 (326)
+++.+.+.|+|-++.=.-++...| ....++++.+..++. .||+...|||.+.+|+.+++..|||-|.|.+
T Consensus 35 lA~~Y~e~GADElvFlDItAs~~g---------r~~~~~vv~r~A~~v-fiPltVGGGI~s~eD~~~ll~aGADKVSINs 104 (256)
T COG0107 35 LAKRYNEEGADELVFLDITASSEG---------RETMLDVVERVAEQV-FIPLTVGGGIRSVEDARKLLRAGADKVSINS 104 (256)
T ss_pred HHHHHHHcCCCeEEEEeccccccc---------chhHHHHHHHHHhhc-eeeeEecCCcCCHHHHHHHHHcCCCeeeeCh
Confidence 466778899999886544432222 123478888887765 9999999999999999999999999999999
Q ss_pred HHHhCCchhHHhHHHhhhCCCC
Q 020423 298 AAYQNPWYTLGHVDTAIYGAPS 319 (326)
Q Consensus 298 all~dP~l~~~~i~~~~~~~~~ 319 (326)
+++.||++..+..+. ||.++
T Consensus 105 aAv~~p~lI~~~a~~--FGsQc 124 (256)
T COG0107 105 AAVKDPELITEAADR--FGSQC 124 (256)
T ss_pred hHhcChHHHHHHHHH--hCCce
Confidence 999999976655555 66554
|
|
| >PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=98.38 E-value=3.4e-06 Score=76.59 Aligned_cols=143 Identities=18% Similarity=0.229 Sum_probs=89.8
Q ss_pred EEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEecc----
Q 020423 128 VLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRI---- 203 (326)
Q Consensus 128 ivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~---- 203 (326)
-+|+.|-- .. .+.++.+.++|+|-|-|+. ...++|+++.++ ...-.. +-+++-.+-
T Consensus 75 ~v~vGGGI-rs-~e~~~~~l~~Ga~rvvigT---------------~a~~~p~~l~~~-~~~~~~--ivvslD~k~g~v~ 134 (241)
T PRK14114 75 HIQIGGGI-RS-LDYAEKLRKLGYRRQIVSS---------------KVLEDPSFLKFL-KEIDVE--PVFSLDTRGGKVA 134 (241)
T ss_pred cEEEecCC-CC-HHHHHHHHHCCCCEEEECc---------------hhhCCHHHHHHH-HHhCCC--EEEEEEccCCEEe
Confidence 46876521 11 2234455568999887742 223578888888 443222 223333222
Q ss_pred --CCCCCccHHHHHHHHHHHhhhCCccEEEEecCC--cccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCH
Q 020423 204 --GVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRK--ALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTV 279 (326)
Q Consensus 204 --g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~--~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~ 279 (326)
||.+.... +..++ .+.+++.|+..+.+..-. ....| .+++.+.++.+. +++|||++|||.+.
T Consensus 135 ~~gw~~~~~~-~~~e~-~~~~~~~g~~~ii~tdI~rdGt~~G-----------~d~el~~~l~~~-~~~pviasGGv~s~ 200 (241)
T PRK14114 135 FKGWLAEEEI-DPVSL-LKRLKEYGLEEIVHTEIEKDGTLQE-----------HDFSLTRKIAIE-AEVKVFAAGGISSE 200 (241)
T ss_pred eCCCeecCCC-CHHHH-HHHHHhcCCCEEEEEeechhhcCCC-----------cCHHHHHHHHHH-CCCCEEEECCCCCH
Confidence 34332211 12232 335578999999887432 22222 347888888766 49999999999999
Q ss_pred HHHHHHHHh-----C-CChhhhhHHHHhCCc
Q 020423 280 DEVNAALRK-----G-AHHVMVGRAAYQNPW 304 (326)
Q Consensus 280 ~da~~~l~~-----G-aD~V~iGRall~dP~ 304 (326)
+|+.++.+. | +++|.+|+|++..--
T Consensus 201 ~Dl~~l~~~~~~~~g~v~gvivg~Al~~g~i 231 (241)
T PRK14114 201 NSLKTAQRVHRETNGLLKGVIVGRAFLEGIL 231 (241)
T ss_pred HHHHHHHhcccccCCcEEEEEEehHHHCCCC
Confidence 999999885 6 999999999987643
|
|
| >TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase | Back alignment and domain information |
|---|
Probab=98.37 E-value=3.8e-05 Score=70.44 Aligned_cols=148 Identities=14% Similarity=0.159 Sum_probs=90.3
Q ss_pred CCcEEEEecCCC-----H--HHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhc---C
Q 020423 124 QHPIVLQIGGSN-----L--DNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAAN---T 193 (326)
Q Consensus 124 ~~piivQL~g~~-----~--~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~---~ 193 (326)
+.++++.+.+.. + +.+...++.+.+.|+|+|++-.. +|. ....+.+ +.+.++++. .
T Consensus 70 ~~~~~~~~~~~~~~g~~~~~~~~~~~v~~al~~Ga~~v~~~~~-----------~g~--~~~~~~~-~~~~~i~~~~~~~ 135 (258)
T TIGR01949 70 DVGLIIHLSASTSLSPDPNDKRIVTTVEDAIRMGADAVSIHVN-----------VGS--DTEWEQI-RDLGMIAEICDDW 135 (258)
T ss_pred CCcEEEEEcCCCCCCCCCCcceeeeeHHHHHHCCCCEEEEEEe-----------cCC--chHHHHH-HHHHHHHHHHHHc
Confidence 455777773321 1 23556678888999999998542 121 0122333 455555543 4
Q ss_pred CCcEEEEecc-CCCC-CccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEE
Q 020423 194 NVPVSVKCRI-GVDD-HDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFT 271 (326)
Q Consensus 194 ~~pv~vK~r~-g~~~-~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVI 271 (326)
+.|+.+..-. |... ..+.++ ....++...+.|+|+|-++.. ...+.++++.+.. .+||+
T Consensus 136 g~~liv~~~~~Gvh~~~~~~~~-~~~~~~~a~~~GADyikt~~~-----------------~~~~~l~~~~~~~-~iPVv 196 (258)
T TIGR01949 136 GVPLLAMMYPRGPHIDDRDPEL-VAHAARLGAELGADIVKTPYT-----------------GDIDSFRDVVKGC-PAPVV 196 (258)
T ss_pred CCCEEEEEeccCcccccccHHH-HHHHHHHHHHHCCCEEeccCC-----------------CCHHHHHHHHHhC-CCcEE
Confidence 7888774321 1100 012222 222334556799999986410 1256677777654 79999
Q ss_pred EeCCCC--CHH----HHHHHHHhCCChhhhhHHHHhCCc
Q 020423 272 LNGGIN--TVD----EVNAALRKGAHHVMVGRAAYQNPW 304 (326)
Q Consensus 272 a~GgI~--s~~----da~~~l~~GaD~V~iGRall~dP~ 304 (326)
+.|||+ |.+ .+.++++.||+++.+||+++..++
T Consensus 197 a~GGi~~~~~~~~~~~i~~~~~aGa~Gia~g~~i~~~~d 235 (258)
T TIGR01949 197 VAGGPKTNSDREFLQMIKDAMEAGAAGVAVGRNIFQHDD 235 (258)
T ss_pred EecCCCCCCHHHHHHHHHHHHHcCCcEEehhhHhhcCCC
Confidence 999999 644 455566899999999999998766
|
Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally. |
| >cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides | Back alignment and domain information |
|---|
Probab=98.36 E-value=1.5e-05 Score=75.09 Aligned_cols=137 Identities=9% Similarity=0.044 Sum_probs=101.0
Q ss_pred CCCcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCC-CcEEEEe
Q 020423 123 EQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTN-VPVSVKC 201 (326)
Q Consensus 123 ~~~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~-~pv~vK~ 201 (326)
...|+..|+.+.+++++.+.++.+.+.||+.|.+++|. +++...+.++++|+.++ .++.++.
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~iKik~g~-----------------~~~~d~~~v~~lr~~~g~~~l~vD~ 184 (316)
T cd03319 122 RPLETDYTISIDTPEAMAAAAKKAAKRGFPLLKIKLGG-----------------DLEDDIERIRAIREAAPDARLRVDA 184 (316)
T ss_pred CCceeEEEEeCCCHHHHHHHHHHHHHcCCCEEEEEeCC-----------------ChhhHHHHHHHHHHhCCCCeEEEeC
Confidence 44567778888889999999999999999999998642 12445678888888774 6677777
Q ss_pred ccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHH
Q 020423 202 RIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDE 281 (326)
Q Consensus 202 r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~d 281 (326)
+.+|+. ++..+ +.+.+++.++++|. . ..++.+++.++++.+. .++||++.+.+.+.++
T Consensus 185 n~~~~~----~~A~~-~~~~l~~~~l~~iE----e------------P~~~~d~~~~~~L~~~-~~ipIa~~E~~~~~~~ 242 (316)
T cd03319 185 NQGWTP----EEAVE-LLRELAELGVELIE----Q------------PVPAGDDDGLAYLRDK-SPLPIMADESCFSAAD 242 (316)
T ss_pred CCCcCH----HHHHH-HHHHHHhcCCCEEE----C------------CCCCCCHHHHHHHHhc-CCCCEEEeCCCCCHHH
Confidence 766653 34444 34556778898883 1 1123347777777765 4899999999999999
Q ss_pred HHHHHH-hCCChhhhhHH
Q 020423 282 VNAALR-KGAHHVMVGRA 298 (326)
Q Consensus 282 a~~~l~-~GaD~V~iGRa 298 (326)
+.++++ .++|.|++--.
T Consensus 243 ~~~~~~~~~~d~v~~~~~ 260 (316)
T cd03319 243 AARLAGGGAYDGINIKLM 260 (316)
T ss_pred HHHHHhcCCCCEEEEecc
Confidence 999999 55999887533
|
The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. |
| >PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated | Back alignment and domain information |
|---|
Probab=98.36 E-value=1.5e-06 Score=78.23 Aligned_cols=84 Identities=23% Similarity=0.347 Sum_probs=66.4
Q ss_pred HHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhH
Q 020423 218 IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGR 297 (326)
Q Consensus 218 ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGR 297 (326)
+++.+++.|+|.+++...+....| .+.+++.+.++.+. +++||++.|||.+.+++.++++.|||.|.+|+
T Consensus 35 ~a~~~~~~g~~~i~v~dld~~~~g---------~~~~~~~i~~i~~~-~~~pv~~~GGI~~~ed~~~~~~~Ga~~vilg~ 104 (233)
T PRK00748 35 QAKAWEDQGAKWLHLVDLDGAKAG---------KPVNLELIEAIVKA-VDIPVQVGGGIRSLETVEALLDAGVSRVIIGT 104 (233)
T ss_pred HHHHHHHcCCCEEEEEeCCccccC---------CcccHHHHHHHHHH-CCCCEEEcCCcCCHHHHHHHHHcCCCEEEECc
Confidence 455677899999999876443222 12347778888776 48999999999999999999999999999999
Q ss_pred HHHhCCchhHHhHH
Q 020423 298 AAYQNPWYTLGHVD 311 (326)
Q Consensus 298 all~dP~l~~~~i~ 311 (326)
+++.+|.++.+..+
T Consensus 105 ~~l~~~~~l~ei~~ 118 (233)
T PRK00748 105 AAVKNPELVKEACK 118 (233)
T ss_pred hHHhCHHHHHHHHH
Confidence 99999985444433
|
|
| >cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily | Back alignment and domain information |
|---|
Probab=98.36 E-value=1.5e-05 Score=76.29 Aligned_cols=138 Identities=16% Similarity=0.158 Sum_probs=98.4
Q ss_pred cEEEEecCC--CHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCC--CcEEEEe
Q 020423 126 PIVLQIGGS--NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTN--VPVSVKC 201 (326)
Q Consensus 126 piivQL~g~--~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~--~pv~vK~ 201 (326)
|+-..+... +++++.+.++++.+.||+.++|+.+..... + +++++..++++++|+.++ +++.+..
T Consensus 128 ~~~~~~~~~~~~~~~~~~~a~~~~~~Gf~~~Kik~g~~~~~-------~----~~~~~d~~~v~~ir~~~g~~~~l~vDa 196 (357)
T cd03316 128 RVYASGGGYDDSPEELAEEAKRAVAEGFTAVKLKVGGPDSG-------G----EDLREDLARVRAVREAVGPDVDLMVDA 196 (357)
T ss_pred eeEEecCCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCcc-------h----HHHHHHHHHHHHHHHhhCCCCEEEEEC
Confidence 444444444 589999999999999999999998754211 1 678999999999999884 5666655
Q ss_pred ccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHH
Q 020423 202 RIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDE 281 (326)
Q Consensus 202 r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~d 281 (326)
.-+| +.++..++ .+.+++.+++++. .+ .++.+++.++++++. .++||++...+.++++
T Consensus 197 N~~~----~~~~a~~~-~~~l~~~~i~~iE----qP------------~~~~~~~~~~~l~~~-~~ipi~~dE~~~~~~~ 254 (357)
T cd03316 197 NGRW----DLAEAIRL-ARALEEYDLFWFE----EP------------VPPDDLEGLARLRQA-TSVPIAAGENLYTRWE 254 (357)
T ss_pred CCCC----CHHHHHHH-HHHhCccCCCeEc----CC------------CCccCHHHHHHHHHh-CCCCEEeccccccHHH
Confidence 4444 34555553 3455677887764 10 122246667777666 4899999999999999
Q ss_pred HHHHHHhC-CChhhhh
Q 020423 282 VNAALRKG-AHHVMVG 296 (326)
Q Consensus 282 a~~~l~~G-aD~V~iG 296 (326)
+.++++.| +|.|++-
T Consensus 255 ~~~~i~~~~~d~v~~k 270 (357)
T cd03316 255 FRDLLEAGAVDIIQPD 270 (357)
T ss_pred HHHHHHhCCCCEEecC
Confidence 99999855 8888663
|
Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD). |
| >cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE) | Back alignment and domain information |
|---|
Probab=98.33 E-value=1.6e-05 Score=70.22 Aligned_cols=155 Identities=16% Similarity=0.186 Sum_probs=88.1
Q ss_pred EEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCC-CCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCC
Q 020423 127 IVLQIGGSNLDNLAKATELANAYNYDEINLNCGC-PSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGV 205 (326)
Q Consensus 127 iivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~-P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~ 205 (326)
+.+.|...+...+.+.++.+.++|+|.|++-..- +.. .+..+-.++++.+++.++.++.+.+-..
T Consensus 2 ~~~~~~~~d~~~~~~~~~~~~~~G~~~i~l~~~d~~~~-------------~~~~~~~~~~~~i~~~~~~~~~v~l~~~- 67 (211)
T cd00429 2 IAPSILSADFANLGEELKRLEEAGADWIHIDVMDGHFV-------------PNLTFGPPVVKALRKHTDLPLDVHLMVE- 67 (211)
T ss_pred ceeeeecCCHHHHHHHHHHHHHcCCCEEEEecccCCCC-------------CccccCHHHHHHHHhhCCCcEEEEeeeC-
Confidence 4566777899999999999999999999994321 110 0111223455666654445554433332
Q ss_pred CCCccHHHHHHHHHHHhhhCCccEEEEecCCc-----------ccC-----------------------------CCC-c
Q 020423 206 DDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKA-----------LLN-----------------------------GIS-P 244 (326)
Q Consensus 206 ~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~-----------~~~-----------------------------g~~-~ 244 (326)
+ ..+. +.. +.++|+|.+++|+... .++ +.. +
T Consensus 68 -d---~~~~---~~~-~~~~g~dgv~vh~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~d~i~~~~~~~g 139 (211)
T cd00429 68 -N---PERY---IEA-FAKAGADIITFHAEATDHLHRTIQLIKELGMKAGVALNPGTPVEVLEPYLDEVDLVLVMSVNPG 139 (211)
T ss_pred -C---HHHH---HHH-HHHcCCCEEEECccchhhHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHhhCCEEEEEEECCC
Confidence 1 1111 111 2246666666664310 000 000 0
Q ss_pred CCcCCCCCccHHHHHHHHhcC----CCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhCCc
Q 020423 245 AENRTIPPLKYEYYYALLRDF----PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW 304 (326)
Q Consensus 245 ~~~~~~~~~~~~~i~~i~~~~----~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~dP~ 304 (326)
......+....+.+.++++.. +++||++.|||+. +++.++++.|+|+|.+||+++..++
T Consensus 140 ~tg~~~~~~~~~~i~~~~~~~~~~~~~~pi~v~GGI~~-env~~~~~~gad~iivgsai~~~~~ 202 (211)
T cd00429 140 FGGQKFIPEVLEKIRKLRELIPENNLNLLIEVDGGINL-ETIPLLAEAGADVLVAGSALFGSDD 202 (211)
T ss_pred CCCcccCHHHHHHHHHHHHHHHhcCCCeEEEEECCCCH-HHHHHHHHcCCCEEEECHHHhCCCC
Confidence 000000111123344443322 1489999999975 9999999999999999999998877
|
This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis. |
| >CHL00200 trpA tryptophan synthase alpha subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.33 E-value=1.1e-05 Score=74.12 Aligned_cols=164 Identities=13% Similarity=0.172 Sum_probs=95.0
Q ss_pred EEEEecC--CCHHHHHHHHHHHHHCCCCEEEecCC--CCCCc---ccCCCCcccccc--CCHHHHHHHHHHHHhcCCCcE
Q 020423 127 IVLQIGG--SNLDNLAKATELANAYNYDEINLNCG--CPSPK---VAGHGCFGVSLM--LDPKFVGEAMSVIAANTNVPV 197 (326)
Q Consensus 127 iivQL~g--~~~~~f~~aA~~a~~aG~d~Iein~g--~P~~~---~~r~d~yGgsl~--~r~~~l~eiv~avr~~~~~pv 197 (326)
++.=+.. .+.+.+.+.++.+.+.|+|.|||-+- -|... +++. +--+|. -+.+.+.++++++|+..+.|+
T Consensus 17 li~yi~aG~P~~~~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a--~~rAL~~g~~~~~~~~~~~~~r~~~~~p~ 94 (263)
T CHL00200 17 LIPFITAGDPDIVITKKALKILDKKGADIIELGIPYSDPLADGPIIQEA--SNRALKQGINLNKILSILSEVNGEIKAPI 94 (263)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCccCHHHHHH--HHHHHHcCCCHHHHHHHHHHHhcCCCCCE
Confidence 4544443 47788999999999999999999653 23210 0000 000111 245678899999997778886
Q ss_pred EEEeccCCCCC--ccHHHHHHHHHHHhhhCCccEEEEecC-------------------------Cc-------------
Q 020423 198 SVKCRIGVDDH--DSYNQLCDFIYKVSSLSPTRHFIIHSR-------------------------KA------------- 237 (326)
Q Consensus 198 ~vK~r~g~~~~--~~~~e~~~~ia~~le~~Gvd~I~v~~~-------------------------~~------------- 237 (326)
.+ +.- ++.. -.++.+ +. .+.++|+|.+.++.- +.
T Consensus 95 vl-m~Y-~N~i~~~G~e~F---~~-~~~~aGvdgviipDLP~ee~~~~~~~~~~~gi~~I~lv~PtT~~eri~~i~~~a~ 168 (263)
T CHL00200 95 VI-FTY-YNPVLHYGINKF---IK-KISQAGVKGLIIPDLPYEESDYLISVCNLYNIELILLIAPTSSKSRIQKIARAAP 168 (263)
T ss_pred EE-Eec-ccHHHHhCHHHH---HH-HHHHcCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhCC
Confidence 43 111 1110 011211 11 123455555554421 10
Q ss_pred ---c---cCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHH
Q 020423 238 ---L---LNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAY 300 (326)
Q Consensus 238 ---~---~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall 300 (326)
+ ..|.++.. ...+..-.+.+..+++ ..++||...+||++++++.++.+.|||+|.+|++++
T Consensus 169 gFIY~vS~~GvTG~~-~~~~~~~~~~i~~ir~-~t~~Pi~vGFGI~~~e~~~~~~~~GADGvVVGSalv 235 (263)
T CHL00200 169 GCIYLVSTTGVTGLK-TELDKKLKKLIETIKK-MTNKPIILGFGISTSEQIKQIKGWNINGIVIGSACV 235 (263)
T ss_pred CcEEEEcCCCCCCCC-ccccHHHHHHHHHHHH-hcCCCEEEECCcCCHHHHHHHHhcCCCEEEECHHHH
Confidence 0 01222221 1111111234555554 569999999999999999999999999999999995
|
|
| >cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA) | Back alignment and domain information |
|---|
Probab=98.31 E-value=1.5e-05 Score=72.44 Aligned_cols=158 Identities=15% Similarity=0.134 Sum_probs=92.6
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccC-----------CHHHHHHHHHHHHhcCCCcEEE--E
Q 020423 134 SNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLML-----------DPKFVGEAMSVIAANTNVPVSV--K 200 (326)
Q Consensus 134 ~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~-----------r~~~l~eiv~avr~~~~~pv~v--K 200 (326)
.+.+.+.+.++.+.++|+|.+|+++ |.+...- -|.... +.++..++++.+|+..+.|+.+ +
T Consensus 11 P~~~~~~~~~~~l~~~Gad~iel~i--PfsdPv~----DG~~I~~a~~~al~~g~~~~~~~~~~~~vr~~~~~pv~lm~y 84 (242)
T cd04724 11 PDLETTLEILKALVEAGADIIELGI--PFSDPVA----DGPVIQAASERALANGVTLKDVLELVKEIRKKNTIPIVLMGY 84 (242)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECC--CCCCCCC----CCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCCEEEEEe
Confidence 4678999999999999999999996 4322111 111112 2358889999999887888655 4
Q ss_pred eccCCCCC--------------------ccHHHHHHHHHHHhhhCCccEEEE-ecCCcc---------c---------CC
Q 020423 201 CRIGVDDH--------------------DSYNQLCDFIYKVSSLSPTRHFII-HSRKAL---------L---------NG 241 (326)
Q Consensus 201 ~r~g~~~~--------------------~~~~e~~~~ia~~le~~Gvd~I~v-~~~~~~---------~---------~g 241 (326)
+.+-+... ...++..+ +.+.+.+.|++.+.+ ...+.. . .|
T Consensus 85 ~n~~~~~G~~~fi~~~~~aG~~giiipDl~~ee~~~-~~~~~~~~g~~~i~~i~P~T~~~~i~~i~~~~~~~vy~~s~~g 163 (242)
T cd04724 85 YNPILQYGLERFLRDAKEAGVDGLIIPDLPPEEAEE-FREAAKEYGLDLIFLVAPTTPDERIKKIAELASGFIYYVSRTG 163 (242)
T ss_pred cCHHHHhCHHHHHHHHHHCCCcEEEECCCCHHHHHH-HHHHHHHcCCcEEEEeCCCCCHHHHHHHHhhCCCCEEEEeCCC
Confidence 33210000 01122212 112223344444432 111100 0 01
Q ss_pred CCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHh
Q 020423 242 ISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 301 (326)
Q Consensus 242 ~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~ 301 (326)
.++.. ....+...+.+.++++. .++||+..|||++++++.++.+. ||+|.+|++++.
T Consensus 164 ~tG~~-~~~~~~~~~~i~~lr~~-~~~pI~vggGI~~~e~~~~~~~~-ADgvVvGSaiv~ 220 (242)
T cd04724 164 VTGAR-TELPDDLKELIKRIRKY-TDLPIAVGFGISTPEQAAEVAKY-ADGVIVGSALVK 220 (242)
T ss_pred CCCCc-cCCChhHHHHHHHHHhc-CCCcEEEEccCCCHHHHHHHHcc-CCEEEECHHHHH
Confidence 11100 00112224566666654 59999999999999999999999 999999999863
|
TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan. |
| >TIGR01163 rpe ribulose-phosphate 3-epimerase | Back alignment and domain information |
|---|
Probab=98.31 E-value=1.8e-05 Score=69.90 Aligned_cols=156 Identities=13% Similarity=0.182 Sum_probs=92.0
Q ss_pred EEecCCCHHHHHHHHHHHHHCCCCEEEecCC-CCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEE--EEeccCC
Q 020423 129 LQIGGSNLDNLAKATELANAYNYDEINLNCG-CPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVS--VKCRIGV 205 (326)
Q Consensus 129 vQL~g~~~~~f~~aA~~a~~aG~d~Iein~g-~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~--vK~r~g~ 205 (326)
++|...+++.+.+.++.+.++|+|.|++-+. .|... +..+-.++++++++..+.|+. ++...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~g~d~i~~~~~Dg~~~~-------------~~~~~~~~v~~i~~~~~~~v~v~lm~~~-- 67 (210)
T TIGR01163 3 PSILSADFARLGEEVKAVEEAGADWIHVDVMDGHFVP-------------NLTFGPPVLEALRKYTDLPIDVHLMVEN-- 67 (210)
T ss_pred chhhcCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCC-------------CcccCHHHHHHHHhcCCCcEEEEeeeCC--
Confidence 4566778899999999999999999999632 22211 122345667777765566643 33321
Q ss_pred CCCccHHHHHHHHHHHhhhCCccEEEEecCCcc--------c--CCC---------Cc----------CC----------
Q 020423 206 DDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKAL--------L--NGI---------SP----------AE---------- 246 (326)
Q Consensus 206 ~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~--------~--~g~---------~~----------~~---------- 246 (326)
..+. +. .+.+.|+|.+++|+.... . .+. +. .+
T Consensus 68 -----~~~~---~~-~~~~~gadgv~vh~~~~~~~~~~~~~~~~~g~~~~~~~~~~t~~e~~~~~~~~~d~i~~~~~~~g 138 (210)
T TIGR01163 68 -----PDRY---IE-DFAEAGADIITVHPEASEHIHRLLQLIKDLGAKAGIVLNPATPLEFLEYVLPDVDLVLLMSVNPG 138 (210)
T ss_pred -----HHHH---HH-HHHHcCCCEEEEccCCchhHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHhhCCEEEEEEEcCC
Confidence 1111 22 223577777777754210 0 000 00 00
Q ss_pred --cCCCCCccHHHHHHHHhcC----CCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhCCchhHHhH
Q 020423 247 --NRTIPPLKYEYYYALLRDF----PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 310 (326)
Q Consensus 247 --~~~~~~~~~~~i~~i~~~~----~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~dP~l~~~~i 310 (326)
.....+..++.+.++++.. +++||.+.|||+ ++.+.++++.|+|++.+||+++..++ +...+
T Consensus 139 ~tg~~~~~~~~~~i~~i~~~~~~~~~~~~i~v~GGI~-~env~~l~~~gad~iivgsai~~~~d-~~~~~ 206 (210)
T TIGR01163 139 FGGQKFIPDTLEKIREVRKMIDENGLSILIEVDGGVN-DDNARELAEAGADILVAGSAIFGADD-YKEVI 206 (210)
T ss_pred CCcccccHHHHHHHHHHHHHHHhcCCCceEEEECCcC-HHHHHHHHHcCCCEEEEChHHhCCCC-HHHHH
Confidence 0000111123333333221 247999999995 79999999999999999999998777 34433
|
This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants. |
| >PRK07807 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.31 E-value=1.5e-05 Score=79.16 Aligned_cols=134 Identities=13% Similarity=0.108 Sum_probs=90.4
Q ss_pred HHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC-CCcEEEEeccCCCCCccHHHHHH
Q 020423 138 NLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCD 216 (326)
Q Consensus 138 ~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~-~~pv~vK~r~g~~~~~~~~e~~~ 216 (326)
+..+.++.+.++|.|.|-+... + + ..+.+.++++.||+.. +.++... +..+.++.
T Consensus 227 ~~~~~a~~Lv~aGvd~i~~D~a------~--~--------~~~~~~~~i~~ik~~~p~~~v~ag------nv~t~~~a-- 282 (479)
T PRK07807 227 DVAAKARALLEAGVDVLVVDTA------H--G--------HQEKMLEALRAVRALDPGVPIVAG------NVVTAEGT-- 282 (479)
T ss_pred hHHHHHHHHHHhCCCEEEEecc------C--C--------ccHHHHHHHHHHHHHCCCCeEEee------ccCCHHHH--
Confidence 3445666677789999887542 1 1 1456888999999876 5666552 23344433
Q ss_pred HHHHHhhhCCccEEEEecCC---cccCCCCcCCcCCCCCccHHHHHHHHh---cCCCceEEEeCCCCCHHHHHHHHHhCC
Q 020423 217 FIYKVSSLSPTRHFIIHSRK---ALLNGISPAENRTIPPLKYEYYYALLR---DFPDLTFTLNGGINTVDEVNAALRKGA 290 (326)
Q Consensus 217 ~ia~~le~~Gvd~I~v~~~~---~~~~g~~~~~~~~~~~~~~~~i~~i~~---~~~~iPVIa~GgI~s~~da~~~l~~Ga 290 (326)
+.+.++|+|.|-|--+. ....+..+. ....+..+.++.+ +. ++|||+-|||.++.|+.+++..||
T Consensus 283 ---~~l~~aGad~v~vgig~gsictt~~~~~~-----~~p~~~av~~~~~~~~~~-~~~via~ggi~~~~~~~~al~~ga 353 (479)
T PRK07807 283 ---RDLVEAGADIVKVGVGPGAMCTTRMMTGV-----GRPQFSAVLECAAAAREL-GAHVWADGGVRHPRDVALALAAGA 353 (479)
T ss_pred ---HHHHHcCCCEEEECccCCcccccccccCC-----chhHHHHHHHHHHHHHhc-CCcEEecCCCCCHHHHHHHHHcCC
Confidence 23446999999874332 122222221 1123666666554 43 899999999999999999999999
Q ss_pred ChhhhhHHHHhCCc
Q 020423 291 HHVMVGRAAYQNPW 304 (326)
Q Consensus 291 D~V~iGRall~dP~ 304 (326)
|.||+|+.|....+
T Consensus 354 ~~v~~g~~~ag~~E 367 (479)
T PRK07807 354 SNVMIGSWFAGTYE 367 (479)
T ss_pred CeeeccHhhccCcc
Confidence 99999999987654
|
|
| >PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional | Back alignment and domain information |
|---|
Probab=98.30 E-value=5.6e-05 Score=70.62 Aligned_cols=208 Identities=12% Similarity=0.077 Sum_probs=116.7
Q ss_pred ccccccCeecCCcEEEccCCCCChH-HHHHHHHHcCCCcEEEecceeeccccccccchhhhhh-cCCCCCcEEEEec-CC
Q 020423 58 KAEMVARQYLPPWFSVAPMMDWTDN-HYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLA-FSPEQHPIVLQIG-GS 134 (326)
Q Consensus 58 ~p~~ig~~~l~nrivlAPM~~~s~~-~~r~~~~~~Gg~gli~te~~~~~~~~~~~~~~~~~~~-~~~~~~piivQL~-g~ 134 (326)
+|++|++.++..|+++. -..+.+. .++....+.| ..++..- +.-..+.. .....+++ +...+..+..|-. +.
T Consensus 73 ~~~~i~~~~~~sRl~~G-tg~y~s~~~~~~a~~asg-~e~vTva-~rr~~~~~--~~~~~~~~~~~~~~~~~lpNTag~~ 147 (326)
T PRK11840 73 DSWTVAGKTFSSRLLVG-TGKYKDFEETAAAVEASG-AEIVTVA-VRRVNVSD--PGAPMLTDYIDPKKYTYLPNTAGCY 147 (326)
T ss_pred CCeEECCEEEecceeEe-cCCCCCHHHHHHHHHHhC-CCEEEEE-EEeecCcC--CCcchHHHhhhhcCCEECccCCCCC
Confidence 68999999999999883 3345444 4455445444 5443222 22111111 11122322 2223444445543 46
Q ss_pred CHHHHHHHHHHHHHC-CCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC--CCcEEEEeccCCCCCccH
Q 020423 135 NLDNLAKATELANAY-NYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSY 211 (326)
Q Consensus 135 ~~~~f~~aA~~a~~a-G~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~--~~pv~vK~r~g~~~~~~~ 211 (326)
+.++-.+.|+.++|+ |-|+|-|-.--.. . .++.++.. .+++.+.-+ |+-+.+=+.. +.
T Consensus 148 ta~eAv~~a~lare~~~~~~iKlEvi~e~-------~---~llpd~~~---~v~aa~~L~~~Gf~v~~yc~~------d~ 208 (326)
T PRK11840 148 TAEEAVRTLRLAREAGGWDLVKLEVLGDA-------K---TLYPDMVE---TLKATEILVKEGFQVMVYCSD------DP 208 (326)
T ss_pred CHHHHHHHHHHHHHhcCCCeEEEEEcCCC-------C---CcccCHHH---HHHHHHHHHHCCCEEEEEeCC------CH
Confidence 789999999999997 4577766431111 1 11233333 333333322 4443222222 12
Q ss_pred HHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCC
Q 020423 212 NQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAH 291 (326)
Q Consensus 212 ~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD 291 (326)
. .++.+++.|+ +.|-...... | ++ +.-.+.+.+..+.+. +++||+.-+||.+++|+.++++.|||
T Consensus 209 ~-----~a~~l~~~g~--~avmPl~~pI-G-sg-----~gv~~p~~i~~~~e~-~~vpVivdAGIg~~sda~~AmelGad 273 (326)
T PRK11840 209 I-----AAKRLEDAGA--VAVMPLGAPI-G-SG-----LGIQNPYTIRLIVEG-ATVPVLVDAGVGTASDAAVAMELGCD 273 (326)
T ss_pred H-----HHHHHHhcCC--EEEeeccccc-c-CC-----CCCCCHHHHHHHHHc-CCCcEEEeCCCCCHHHHHHHHHcCCC
Confidence 1 2455667888 3333311111 1 01 111135666666665 58999999999999999999999999
Q ss_pred hhhhhHHHHhCCc
Q 020423 292 HVMVGRAAYQNPW 304 (326)
Q Consensus 292 ~V~iGRall~dP~ 304 (326)
+|.+.++...-++
T Consensus 274 gVL~nSaIa~a~d 286 (326)
T PRK11840 274 GVLMNTAIAEAKN 286 (326)
T ss_pred EEEEcceeccCCC
Confidence 9999999886444
|
|
| >TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase | Back alignment and domain information |
|---|
Probab=98.29 E-value=9.9e-05 Score=65.13 Aligned_cols=142 Identities=14% Similarity=0.150 Sum_probs=91.6
Q ss_pred CCcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEe-c
Q 020423 124 QHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKC-R 202 (326)
Q Consensus 124 ~~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~-r 202 (326)
+..+++-+.-.++..+ .++.+.++|+|.|-+|+-++ ...+.++++.+++ .|.++.+-+ .
T Consensus 52 ~~~i~~d~k~~d~~~~--~~~~~~~~Gad~i~vh~~~~-----------------~~~~~~~i~~~~~-~g~~~~~~~~~ 111 (206)
T TIGR03128 52 DRKVLADLKTMDAGEY--EAEQAFAAGADIVTVLGVAD-----------------DATIKGAVKAAKK-HGKEVQVDLIN 111 (206)
T ss_pred CCEEEEEEeeccchHH--HHHHHHHcCCCEEEEeccCC-----------------HHHHHHHHHHHHH-cCCEEEEEecC
Confidence 3456666643455543 56778899999999986432 1234566776655 478877753 2
Q ss_pred cCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHH
Q 020423 203 IGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEV 282 (326)
Q Consensus 203 ~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da 282 (326)
.. ...++. ... .+.|+|++.++.+.. +. ...+..++.+.++++.....++...||| +++.+
T Consensus 112 ~~----t~~~~~----~~~-~~~g~d~v~~~pg~~---~~------~~~~~~~~~i~~l~~~~~~~~i~v~GGI-~~~n~ 172 (206)
T TIGR03128 112 VK----DKVKRA----KEL-KELGADYIGVHTGLD---EQ------AKGQNPFEDLQTILKLVKEARVAVAGGI-NLDTI 172 (206)
T ss_pred CC----ChHHHH----HHH-HHcCCCEEEEcCCcC---cc------cCCCCCHHHHHHHHHhcCCCcEEEECCc-CHHHH
Confidence 21 112222 222 346999998864321 10 1112235666666665545667679999 89999
Q ss_pred HHHHHhCCChhhhhHHHHhCCc
Q 020423 283 NAALRKGAHHVMVGRAAYQNPW 304 (326)
Q Consensus 283 ~~~l~~GaD~V~iGRall~dP~ 304 (326)
.++++.|||.|.+||+++..++
T Consensus 173 ~~~~~~Ga~~v~vGsai~~~~d 194 (206)
T TIGR03128 173 PDVIKLGPDIVIVGGAITKAAD 194 (206)
T ss_pred HHHHHcCCCEEEEeehhcCCCC
Confidence 9999999999999999987666
|
at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase. |
| >PRK07107 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.29 E-value=1.2e-05 Score=80.30 Aligned_cols=138 Identities=14% Similarity=0.126 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHH
Q 020423 137 DNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 216 (326)
Q Consensus 137 ~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~ 216 (326)
++..+-++.+.++|+|.|+|.. .. + ..+...+.++.+|+..+.++.|+. | +..+.++.
T Consensus 241 ~~~~~ra~~Lv~aGvd~i~vd~--a~------g--------~~~~~~~~i~~ir~~~~~~~~V~a--G--nV~t~e~a-- 298 (502)
T PRK07107 241 RDYAERVPALVEAGADVLCIDS--SE------G--------YSEWQKRTLDWIREKYGDSVKVGA--G--NVVDREGF-- 298 (502)
T ss_pred hhHHHHHHHHHHhCCCeEeecC--cc------c--------ccHHHHHHHHHHHHhCCCCceEEe--c--cccCHHHH--
Confidence 4555666778889999999851 11 1 244557889999987754455542 1 12233332
Q ss_pred HHHHHhhhCCccEEEEecCCcccCCCCcCC-cCCCCCccHHHHHHHHhc-------C-CCceEEEeCCCCCHHHHHHHHH
Q 020423 217 FIYKVSSLSPTRHFIIHSRKALLNGISPAE-NRTIPPLKYEYYYALLRD-------F-PDLTFTLNGGINTVDEVNAALR 287 (326)
Q Consensus 217 ~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~-~~~~~~~~~~~i~~i~~~-------~-~~iPVIa~GgI~s~~da~~~l~ 287 (326)
+.+.++|+|.|.|.-+.+ ..+... ...+....+..+.++.+. . .++|||+-|||++.-|+.+++.
T Consensus 299 ---~~li~aGAd~I~vg~g~G---s~c~tr~~~~~g~~~~~ai~~~~~a~~~~~~~~g~~~~viadgGir~~gdi~KAla 372 (502)
T PRK07107 299 ---RYLAEAGADFVKVGIGGG---SICITREQKGIGRGQATALIEVAKARDEYFEETGVYIPICSDGGIVYDYHMTLALA 372 (502)
T ss_pred ---HHHHHcCCCEEEECCCCC---cCcccccccCCCccHHHHHHHHHHHHHHHHhhcCCcceEEEcCCCCchhHHHHHHH
Confidence 223369999998842211 000000 001111224444443331 1 1489999999999999999999
Q ss_pred hCCChhhhhHHHHhC
Q 020423 288 KGAHHVMVGRAAYQN 302 (326)
Q Consensus 288 ~GaD~V~iGRall~d 302 (326)
.|||+||+||.+-..
T Consensus 373 ~GA~~vm~G~~~ag~ 387 (502)
T PRK07107 373 MGADFIMLGRYFARF 387 (502)
T ss_pred cCCCeeeeChhhhcc
Confidence 999999999998653
|
|
| >TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ | Back alignment and domain information |
|---|
Probab=98.25 E-value=4.1e-06 Score=75.50 Aligned_cols=84 Identities=20% Similarity=0.283 Sum_probs=66.0
Q ss_pred HHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhH
Q 020423 218 IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGR 297 (326)
Q Consensus 218 ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGR 297 (326)
+++.+++.|++.++++.......+ .+.+++.++++.+.. ++||++.|||++.+++.++++.|+|.|.+|+
T Consensus 35 ~a~~~~~~g~~~i~i~dl~~~~~~---------~~~n~~~~~~i~~~~-~~pv~~~ggi~~~~d~~~~~~~G~~~vilg~ 104 (232)
T TIGR03572 35 AARIYNAKGADELIVLDIDASKRG---------REPLFELISNLAEEC-FMPLTVGGGIRSLEDAKKLLSLGADKVSINT 104 (232)
T ss_pred HHHHHHHcCCCEEEEEeCCCcccC---------CCCCHHHHHHHHHhC-CCCEEEECCCCCHHHHHHHHHcCCCEEEECh
Confidence 345667899999999876542111 124577788887764 8999999999999999999999999999999
Q ss_pred HHHhCCchhHHhHH
Q 020423 298 AAYQNPWYTLGHVD 311 (326)
Q Consensus 298 all~dP~l~~~~i~ 311 (326)
+++.||.++.+..+
T Consensus 105 ~~l~~~~~~~~~~~ 118 (232)
T TIGR03572 105 AALENPDLIEEAAR 118 (232)
T ss_pred hHhcCHHHHHHHHH
Confidence 99999995444443
|
This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr |
| >PRK00507 deoxyribose-phosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=98.24 E-value=3.2e-05 Score=69.23 Aligned_cols=136 Identities=15% Similarity=0.096 Sum_probs=88.9
Q ss_pred HHHHHHHHHHHHHCCCCEEEec--CCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHH
Q 020423 136 LDNLAKATELANAYNYDEINLN--CGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQ 213 (326)
Q Consensus 136 ~~~f~~aA~~a~~aG~d~Iein--~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e 213 (326)
.+.=...++.+.+.|+|.||+- .+++. ..+.+.+.+-+.++++.+ .|+.+|+-+-..+- +-++
T Consensus 73 ~~~K~~e~~~Ai~~GA~EiD~Vin~~~~~-------------~g~~~~v~~ei~~v~~~~-~~~~lKvIlEt~~L-~~e~ 137 (221)
T PRK00507 73 TAVKAFEAKDAIANGADEIDMVINIGALK-------------SGDWDAVEADIRAVVEAA-GGAVLKVIIETCLL-TDEE 137 (221)
T ss_pred HHHHHHHHHHHHHcCCceEeeeccHHHhc-------------CCCHHHHHHHHHHHHHhc-CCceEEEEeecCcC-CHHH
Confidence 3444556677888899999973 33332 234677888888888765 46788874422221 2223
Q ss_pred HHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcC-CCceEEEeCCCCCHHHHHHHHHhCCCh
Q 020423 214 LCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF-PDLTFTLNGGINTVDEVNAALRKGAHH 292 (326)
Q Consensus 214 ~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~-~~iPVIa~GgI~s~~da~~~l~~GaD~ 292 (326)
+. .+.++..++|+|+|-.+.+.. .+| ...+.+..+.+.. .+++|.++|||+|.+++.++++.||+.
T Consensus 138 i~-~a~~~~~~agadfIKTsTG~~-~~g-----------at~~~v~~m~~~~~~~~~IKasGGIrt~~~a~~~i~aGA~r 204 (221)
T PRK00507 138 KV-KACEIAKEAGADFVKTSTGFS-TGG-----------ATVEDVKLMRETVGPRVGVKASGGIRTLEDALAMIEAGATR 204 (221)
T ss_pred HH-HHHHHHHHhCCCEEEcCCCCC-CCC-----------CCHHHHHHHHHHhCCCceEEeeCCcCCHHHHHHHHHcCcce
Confidence 33 345566789999887765432 111 1234343333332 369999999999999999999999999
Q ss_pred hhhhHHH
Q 020423 293 VMVGRAA 299 (326)
Q Consensus 293 V~iGRal 299 (326)
+...++.
T Consensus 205 iGtS~~~ 211 (221)
T PRK00507 205 LGTSAGV 211 (221)
T ss_pred EccCcHH
Confidence 9887653
|
|
| >TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein | Back alignment and domain information |
|---|
Probab=98.23 E-value=3.3e-05 Score=68.95 Aligned_cols=55 Identities=16% Similarity=0.255 Sum_probs=47.0
Q ss_pred ccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhCCchhH
Q 020423 253 LKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTL 307 (326)
Q Consensus 253 ~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~dP~l~~ 307 (326)
.+.+.+.++++...++|++..|||+|+++++++++.|||.|.+|+.+..||.++.
T Consensus 165 v~~e~i~~v~~~~~~~pl~vGGGIrs~e~a~~l~~aGAD~VVVGs~~~~dp~~~~ 219 (223)
T TIGR01768 165 VPPELVAEVKKVLDKARLFVGGGIRSVEKAREMAEAGADTIVTGNVIEEDVDKAL 219 (223)
T ss_pred cCHHHHHHHHHHcCCCCEEEecCCCCHHHHHHHHHcCCCEEEECcHHhhCHHHHH
Confidence 3467777776654389999999999999999999999999999999999998533
|
This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired. |
| >PLN02591 tryptophan synthase | Back alignment and domain information |
|---|
Probab=98.23 E-value=6.2e-05 Score=68.63 Aligned_cols=163 Identities=17% Similarity=0.193 Sum_probs=96.9
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEecCC--CCCCc---ccCCCCcccccc--CCHHHHHHHHHHHHhcCCCcEEEEecc---
Q 020423 134 SNLDNLAKATELANAYNYDEINLNCG--CPSPK---VAGHGCFGVSLM--LDPKFVGEAMSVIAANTNVPVSVKCRI--- 203 (326)
Q Consensus 134 ~~~~~f~~aA~~a~~aG~d~Iein~g--~P~~~---~~r~d~yGgsl~--~r~~~l~eiv~avr~~~~~pv~vK~r~--- 203 (326)
.+.+.+.+.++.+.+.|+|.|||-+- -|... +++. +--+|. -+.+.+.++++.+|+..+.|+.+=.=.
T Consensus 13 P~~e~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a--~~rAL~~G~~~~~~~~~~~~~r~~~~~p~ilm~Y~N~i 90 (250)
T PLN02591 13 PDLDTTAEALRLLDACGADVIELGVPYSDPLADGPVIQAA--ATRALEKGTTLDSVISMLKEVAPQLSCPIVLFTYYNPI 90 (250)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCCCcccCHHHHHH--HHHHHHcCCCHHHHHHHHHHHhcCCCCCEEEEecccHH
Confidence 47788999999999999999999653 23210 0000 000111 345678899999997778886432111
Q ss_pred ---CCCC----------------CccHHHHHHHHHHHhhhCCccEEEEecCCc----------------c---cCCCCcC
Q 020423 204 ---GVDD----------------HDSYNQLCDFIYKVSSLSPTRHFIIHSRKA----------------L---LNGISPA 245 (326)
Q Consensus 204 ---g~~~----------------~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~----------------~---~~g~~~~ 245 (326)
|.+. ...++|..+ +...+++.|++.|.+-.-+. + ..|.++.
T Consensus 91 ~~~G~~~F~~~~~~aGv~GviipDLP~ee~~~-~~~~~~~~gl~~I~lv~Ptt~~~ri~~ia~~~~gFIY~Vs~~GvTG~ 169 (250)
T PLN02591 91 LKRGIDKFMATIKEAGVHGLVVPDLPLEETEA-LRAEAAKNGIELVLLTTPTTPTERMKAIAEASEGFVYLVSSTGVTGA 169 (250)
T ss_pred HHhHHHHHHHHHHHcCCCEEEeCCCCHHHHHH-HHHHHHHcCCeEEEEeCCCCCHHHHHHHHHhCCCcEEEeeCCCCcCC
Confidence 1000 001233333 23344566777666532211 0 0122221
Q ss_pred CcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHh
Q 020423 246 ENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 301 (326)
Q Consensus 246 ~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~ 301 (326)
.. ..+....+.+..+++ .+++||+..-||++++++.++++.|||+|.+|++++.
T Consensus 170 ~~-~~~~~~~~~i~~vk~-~~~~Pv~vGFGI~~~e~v~~~~~~GADGvIVGSalVk 223 (250)
T PLN02591 170 RA-SVSGRVESLLQELKE-VTDKPVAVGFGISKPEHAKQIAGWGADGVIVGSAMVK 223 (250)
T ss_pred Cc-CCchhHHHHHHHHHh-cCCCceEEeCCCCCHHHHHHHHhcCCCEEEECHHHHH
Confidence 10 111211334555555 4699999999999999999999999999999999975
|
|
| >PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=98.22 E-value=3.2e-06 Score=76.16 Aligned_cols=80 Identities=19% Similarity=0.348 Sum_probs=61.8
Q ss_pred HHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHH
Q 020423 219 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRA 298 (326)
Q Consensus 219 a~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRa 298 (326)
++.+++. ++.+++-..+....| .+.+++.++++.+. +++||++.|||+|.+|++++++.|+|.|.+|++
T Consensus 36 a~~~~~~-~~~l~ivDldga~~g---------~~~n~~~i~~i~~~-~~~pv~~gGGIrs~edv~~l~~~G~~~vivGta 104 (228)
T PRK04128 36 ALRFSEY-VDKIHVVDLDGAFEG---------KPKNLDVVKNIIRE-TGLKVQVGGGLRTYESIKDAYEIGVENVIIGTK 104 (228)
T ss_pred HHHHHHh-CCEEEEEECcchhcC---------CcchHHHHHHHHhh-CCCCEEEcCCCCCHHHHHHHHHCCCCEEEECch
Confidence 3445556 899988655533222 12357888888776 589999999999999999999999999999999
Q ss_pred HHhCCchhHHhHH
Q 020423 299 AYQNPWYTLGHVD 311 (326)
Q Consensus 299 ll~dP~l~~~~i~ 311 (326)
++ ||++ .+++.
T Consensus 105 a~-~~~~-l~~~~ 115 (228)
T PRK04128 105 AF-DLEF-LEKVT 115 (228)
T ss_pred hc-CHHH-HHHHH
Confidence 99 9995 44443
|
|
| >PLN02334 ribulose-phosphate 3-epimerase | Back alignment and domain information |
|---|
Probab=98.21 E-value=6.4e-05 Score=67.71 Aligned_cols=146 Identities=14% Similarity=0.213 Sum_probs=90.9
Q ss_pred CCCcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCC-CCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEe
Q 020423 123 EQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGC-PSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKC 201 (326)
Q Consensus 123 ~~~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~-P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~ 201 (326)
...++.+.|+-.+++++.+.+ .++|+|+|-+|.+- .. +...+.++.+++. +.-+.+-+
T Consensus 64 ~~~~~~vhlmv~~p~d~~~~~---~~~gad~v~vH~~q~~~-----------------d~~~~~~~~i~~~-g~~iGls~ 122 (229)
T PLN02334 64 TDAPLDCHLMVTNPEDYVPDF---AKAGASIFTFHIEQAST-----------------IHLHRLIQQIKSA-GMKAGVVL 122 (229)
T ss_pred CCCcEEEEeccCCHHHHHHHH---HHcCCCEEEEeeccccc-----------------hhHHHHHHHHHHC-CCeEEEEE
Confidence 455678889888999887655 67899999999762 11 1223455555442 33333333
Q ss_pred ccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHH
Q 020423 202 RIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDE 281 (326)
Q Consensus 202 r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~d 281 (326)
.. . +..+.. ..+++..|+|+|.+-+-.+ |.+. ...++...+.+.++++...++||.+-||| +.++
T Consensus 123 ~~--~---t~~~~~---~~~~~~~~~Dyi~~~~v~p---g~~~---~~~~~~~~~~i~~~~~~~~~~~I~a~GGI-~~e~ 187 (229)
T PLN02334 123 NP--G---TPVEAV---EPVVEKGLVDMVLVMSVEP---GFGG---QSFIPSMMDKVRALRKKYPELDIEVDGGV-GPST 187 (229)
T ss_pred CC--C---CCHHHH---HHHHhccCCCEEEEEEEec---CCCc---cccCHHHHHHHHHHHHhCCCCcEEEeCCC-CHHH
Confidence 22 1 111221 2233322399995532111 1111 11223345667777665457899999999 8999
Q ss_pred HHHHHHhCCChhhhhHHHHhCCc
Q 020423 282 VNAALRKGAHHVMVGRAAYQNPW 304 (326)
Q Consensus 282 a~~~l~~GaD~V~iGRall~dP~ 304 (326)
+.++++.|+|+|.+|++++..++
T Consensus 188 i~~l~~aGad~vvvgsai~~~~d 210 (229)
T PLN02334 188 IDKAAEAGANVIVAGSAVFGAPD 210 (229)
T ss_pred HHHHHHcCCCEEEEChHHhCCCC
Confidence 99999999999999999997776
|
|
| >TIGR00734 hisAF_rel hisA/hisF family protein | Back alignment and domain information |
|---|
Probab=98.19 E-value=1.5e-05 Score=71.43 Aligned_cols=49 Identities=22% Similarity=0.285 Sum_probs=43.2
Q ss_pred ccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhC
Q 020423 253 LKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN 302 (326)
Q Consensus 253 ~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~d 302 (326)
.+++.++++.+.. ++|||++|||.+.+|+.++.+.|+|+|.+|++++..
T Consensus 171 ~d~eli~~i~~~~-~~pvia~GGi~s~ed~~~l~~~Ga~~vivgsal~~g 219 (221)
T TIGR00734 171 PNLELLTKTLELS-EHPVMLGGGISGVEDLELLKEMGVSAVLVATAVHKG 219 (221)
T ss_pred CCHHHHHHHHhhC-CCCEEEeCCCCCHHHHHHHHHCCCCEEEEhHHhhCC
Confidence 3588888888764 899999999999999999888999999999998753
|
This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown. |
| >PRK08883 ribulose-phosphate 3-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=98.19 E-value=4.6e-05 Score=68.25 Aligned_cols=150 Identities=16% Similarity=0.281 Sum_probs=95.7
Q ss_pred EEEecCCCHHHHHHHHHHHHHCCCCEEEecC--CCCCCcccCCCCccccccCCHHHHHHHHHHHHhc-CCCcEEEEeccC
Q 020423 128 VLQIGGSNLDNLAKATELANAYNYDEINLNC--GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAAN-TNVPVSVKCRIG 204 (326)
Q Consensus 128 ivQL~g~~~~~f~~aA~~a~~aG~d~Iein~--g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~-~~~pv~vK~r~g 204 (326)
..+|...+...+.+..+++.++|+|.+-+-. |+-.++. .|| -++++++|+. ++.|+.|-+-.
T Consensus 3 ~pSil~ad~~~l~~~i~~l~~~g~~~lH~DvmDG~Fvpn~----tfg----------~~~i~~i~~~~~~~~~dvHLMv- 67 (220)
T PRK08883 3 APSILSADFARLGEDVEKVLAAGADVVHFDVMDNHYVPNL----TFG----------APICKALRDYGITAPIDVHLMV- 67 (220)
T ss_pred chhhhhcCHHHHHHHHHHHHHcCCCEEEEecccCcccCcc----ccC----------HHHHHHHHHhCCCCCEEEEecc-
Confidence 4566777888999999999999999876643 2222211 144 4567778776 57888776554
Q ss_pred CCCCccHHHHHHHHHHHhhhCCccEEEEecCCcc-----------c---------------------------------C
Q 020423 205 VDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKAL-----------L---------------------------------N 240 (326)
Q Consensus 205 ~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~-----------~---------------------------------~ 240 (326)
++ .+..++ .+.++|+|+|++|--... . .
T Consensus 68 -~~---p~~~i~----~~~~~gad~i~~H~Ea~~~~~~~l~~ik~~g~k~GlalnP~Tp~~~i~~~l~~~D~vlvMtV~P 139 (220)
T PRK08883 68 -KP---VDRIIP----DFAKAGASMITFHVEASEHVDRTLQLIKEHGCQAGVVLNPATPLHHLEYIMDKVDLILLMSVNP 139 (220)
T ss_pred -CC---HHHHHH----HHHHhCCCEEEEcccCcccHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCeEEEEEecC
Confidence 22 222222 234589999988843110 0 0
Q ss_pred CCCcCCcCCCCCccHHHHHHHHhcC----CCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhCCc
Q 020423 241 GISPAENRTIPPLKYEYYYALLRDF----PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW 304 (326)
Q Consensus 241 g~~~~~~~~~~~~~~~~i~~i~~~~----~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~dP~ 304 (326)
|.++. ..-+...+.++++++.. .++||.+-|||+ .+.+.++.+.|||.+.+|++++..++
T Consensus 140 GfgGq---~fi~~~lekI~~l~~~~~~~~~~~~I~vdGGI~-~eni~~l~~aGAd~vVvGSaIf~~~d 203 (220)
T PRK08883 140 GFGGQ---SFIPHTLDKLRAVRKMIDESGRDIRLEIDGGVK-VDNIREIAEAGADMFVAGSAIFGQPD 203 (220)
T ss_pred CCCCc---eecHhHHHHHHHHHHHHHhcCCCeeEEEECCCC-HHHHHHHHHcCCCEEEEeHHHhCCCC
Confidence 11110 11112234455544332 258999999996 99999999999999999999987666
|
|
| >PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=98.18 E-value=2.8e-05 Score=70.17 Aligned_cols=141 Identities=13% Similarity=0.163 Sum_probs=87.2
Q ss_pred EEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHH-HhcCCCcEEEE----ec-
Q 020423 129 LQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVI-AANTNVPVSVK----CR- 202 (326)
Q Consensus 129 vQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~av-r~~~~~pv~vK----~r- 202 (326)
+|+.|- .... +.++++.++|+|-|-|+ +...++|+++.++.+.. .+.+-..+.+| +.
T Consensus 76 v~vGGG-Irs~-e~~~~~l~~Ga~kvvig---------------t~a~~~p~~~~~~~~~~g~~~ivvslD~~~~~~v~~ 138 (232)
T PRK13586 76 IQVGGG-IRDI-EKAKRLLSLDVNALVFS---------------TIVFTNFNLFHDIVREIGSNRVLVSIDYDNTKRVLI 138 (232)
T ss_pred EEEeCC-cCCH-HHHHHHHHCCCCEEEEC---------------chhhCCHHHHHHHHHHhCCCCEEEEEEcCCCCEEEc
Confidence 777652 1112 23355556799988764 22236789999888877 23221122221 11
Q ss_pred cCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCc--ccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHH
Q 020423 203 IGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKA--LLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVD 280 (326)
Q Consensus 203 ~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~--~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~ 280 (326)
-+|.+. . .++.+ +.+.+++.|+..|.++.-.. ...| .+++.+..+.+. ..|+|++|||.+.+
T Consensus 139 ~gw~~~-~-~~~~e-~~~~l~~~g~~~ii~tdI~~dGt~~G-----------~d~el~~~~~~~--~~~viasGGv~s~~ 202 (232)
T PRK13586 139 RGWKEK-S-MEVID-GIKKVNELELLGIIFTYISNEGTTKG-----------IDYNVKDYARLI--RGLKEYAGGVSSDA 202 (232)
T ss_pred cCCeeC-C-CCHHH-HHHHHHhcCCCEEEEecccccccCcC-----------cCHHHHHHHHhC--CCCEEEECCCCCHH
Confidence 134331 1 12223 34456789998888875432 2222 347777666543 34699999999999
Q ss_pred HHHHHHHhCCChhhhhHHHHhC
Q 020423 281 EVNAALRKGAHHVMVGRAAYQN 302 (326)
Q Consensus 281 da~~~l~~GaD~V~iGRall~d 302 (326)
|+.++.+.|+|+|.+|+|++.+
T Consensus 203 Dl~~l~~~G~~gvivg~Aly~g 224 (232)
T PRK13586 203 DLEYLKNVGFDYIIVGMAFYLG 224 (232)
T ss_pred HHHHHHHCCCCEEEEehhhhcC
Confidence 9999999999999999999843
|
|
| >cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family | Back alignment and domain information |
|---|
Probab=98.18 E-value=5.8e-05 Score=66.75 Aligned_cols=133 Identities=15% Similarity=0.124 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCC-CcEEEEeccCCCCCccHHHH
Q 020423 136 LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTN-VPVSVKCRIGVDDHDSYNQL 214 (326)
Q Consensus 136 ~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~-~pv~vK~r~g~~~~~~~~e~ 214 (326)
.+.-...++.+.+.|+|.|++.+. ||.-..++.+.+.+-+.++++.++ .|+-+=+-.+.. +.++
T Consensus 68 ~~~k~~eve~A~~~GAdevdvv~~-----------~g~~~~~~~~~~~~ei~~v~~~~~g~~lkvI~e~~~l---~~~~- 132 (203)
T cd00959 68 TEVKVAEAREAIADGADEIDMVIN-----------IGALKSGDYEAVYEEIAAVVEACGGAPLKVILETGLL---TDEE- 132 (203)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeec-----------HHHHhCCCHHHHHHHHHHHHHhcCCCeEEEEEecCCC---CHHH-
Confidence 455555678888899999999752 232223455667777777777764 444332222222 2223
Q ss_pred HHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhh
Q 020423 215 CDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVM 294 (326)
Q Consensus 215 ~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~ 294 (326)
+....++..++|+|+|-.+.+... .| ..+.+.+.+.+..+ ..+||-++|||+|.+++.++++.||+-+.
T Consensus 133 i~~a~ria~e~GaD~IKTsTG~~~-~~--------at~~~v~~~~~~~~--~~v~ik~aGGikt~~~~l~~~~~g~~riG 201 (203)
T cd00959 133 IIKACEIAIEAGADFIKTSTGFGP-GG--------ATVEDVKLMKEAVG--GRVGVKAAGGIRTLEDALAMIEAGATRIG 201 (203)
T ss_pred HHHHHHHHHHhCCCEEEcCCCCCC-CC--------CCHHHHHHHHHHhC--CCceEEEeCCCCCHHHHHHHHHhChhhcc
Confidence 334566777899999988744310 11 11122344555554 37999999999999999999999998764
|
DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction. |
| >PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=98.17 E-value=6.6e-06 Score=74.50 Aligned_cols=83 Identities=18% Similarity=0.252 Sum_probs=63.9
Q ss_pred HHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHH
Q 020423 220 KVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAA 299 (326)
Q Consensus 220 ~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRal 299 (326)
+.+.+.|+|++++-.-+....+ ....++.++++.+.. ++|++.+|||++.++++.+++.|||.|.+|+.+
T Consensus 39 ~~~~~~G~~~l~i~dl~~~~~~---------~~~~~~~i~~i~~~~-~~~l~v~GGi~~~~~~~~~~~~Ga~~v~iGs~~ 108 (241)
T PRK13585 39 KRWVDAGAETLHLVDLDGAFEG---------ERKNAEAIEKIIEAV-GVPVQLGGGIRSAEDAASLLDLGVDRVILGTAA 108 (241)
T ss_pred HHHHHcCCCEEEEEechhhhcC---------CcccHHHHHHHHHHc-CCcEEEcCCcCCHHHHHHHHHcCCCEEEEChHH
Confidence 3455699999987644321111 122477888888775 899999999999999999999999999999999
Q ss_pred HhCCchhHHhHHH
Q 020423 300 YQNPWYTLGHVDT 312 (326)
Q Consensus 300 l~dP~l~~~~i~~ 312 (326)
+.+|+++.+..+.
T Consensus 109 ~~~~~~~~~i~~~ 121 (241)
T PRK13585 109 VENPEIVRELSEE 121 (241)
T ss_pred hhChHHHHHHHHH
Confidence 9999965444444
|
|
| >PRK14024 phosphoribosyl isomerase A; Provisional | Back alignment and domain information |
|---|
Probab=98.17 E-value=6e-06 Score=75.00 Aligned_cols=84 Identities=21% Similarity=0.284 Sum_probs=67.1
Q ss_pred HHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhH
Q 020423 218 IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGR 297 (326)
Q Consensus 218 ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGR 297 (326)
+++.+++.|+|.|++-.-+... | ...+.+.++++.+.. ++||.+.|||+|.+++++++..|||-|.+|+
T Consensus 37 ~a~~~~~~g~~~l~ivDLd~~~-g---------~~~n~~~i~~i~~~~-~~pv~vgGGirs~edv~~~l~~Ga~kvviGs 105 (241)
T PRK14024 37 AALAWQRDGAEWIHLVDLDAAF-G---------RGSNRELLAEVVGKL-DVKVELSGGIRDDESLEAALATGCARVNIGT 105 (241)
T ss_pred HHHHHHHCCCCEEEEEeccccC-C---------CCccHHHHHHHHHHc-CCCEEEcCCCCCHHHHHHHHHCCCCEEEECc
Confidence 3455667999999997654321 1 123478888888775 8999999999999999999999999999999
Q ss_pred HHHhCCchhHHhHHH
Q 020423 298 AAYQNPWYTLGHVDT 312 (326)
Q Consensus 298 all~dP~l~~~~i~~ 312 (326)
+++.||+++.+.++.
T Consensus 106 ~~l~~p~l~~~i~~~ 120 (241)
T PRK14024 106 AALENPEWCARVIAE 120 (241)
T ss_pred hHhCCHHHHHHHHHH
Confidence 999999975555544
|
|
| >TIGR00126 deoC deoxyribose-phosphate aldolase | Back alignment and domain information |
|---|
Probab=98.16 E-value=6.2e-05 Score=66.86 Aligned_cols=138 Identities=14% Similarity=0.146 Sum_probs=88.6
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC-CCcEEEEeccCCCCCccHHH
Q 020423 135 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQ 213 (326)
Q Consensus 135 ~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~-~~pv~vK~r~g~~~~~~~~e 213 (326)
..+.=...++.+.+.|+|.|++.+. ||.-...+.+.+.+-+.+|++.+ +.|+-|=+-.+.- +-++
T Consensus 68 ~~~~K~~E~~~Av~~GAdEiDvv~n-----------~g~l~~g~~~~v~~ei~~i~~~~~g~~lKvIlE~~~L---~~~e 133 (211)
T TIGR00126 68 TTDVKLYETKEAIKYGADEVDMVIN-----------IGALKDGNEEVVYDDIRAVVEACAGVLLKVIIETGLL---TDEE 133 (211)
T ss_pred cHHHHHHHHHHHHHcCCCEEEeecc-----------hHhhhCCcHHHHHHHHHHHHHHcCCCeEEEEEecCCC---CHHH
Confidence 3444455567788899999999652 23222345677778888888777 4554442333321 1234
Q ss_pred HHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChh
Q 020423 214 LCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHV 293 (326)
Q Consensus 214 ~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V 293 (326)
+. ...++..++|+|+|-.+.+... .| ..+.+...+.+..+. .+||-++|||+|.+++.++++.||+-+
T Consensus 134 i~-~a~~ia~eaGADfvKTsTGf~~-~g--------at~~dv~~m~~~v~~--~v~IKaaGGirt~~~a~~~i~aGa~ri 201 (211)
T TIGR00126 134 IR-KACEICIDAGADFVKTSTGFGA-GG--------ATVEDVRLMRNTVGD--TIGVKASGGVRTAEDAIAMIEAGASRI 201 (211)
T ss_pred HH-HHHHHHHHhCCCEEEeCCCCCC-CC--------CCHHHHHHHHHHhcc--CCeEEEeCCCCCHHHHHHHHHHhhHHh
Confidence 33 3556677899999988755321 11 112223444444443 689999999999999999999999987
Q ss_pred hhhHH
Q 020423 294 MVGRA 298 (326)
Q Consensus 294 ~iGRa 298 (326)
...++
T Consensus 202 Gts~~ 206 (211)
T TIGR00126 202 GASAG 206 (211)
T ss_pred CcchH
Confidence 76543
|
Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria. |
| >PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.00011 Score=66.19 Aligned_cols=51 Identities=22% Similarity=0.423 Sum_probs=45.6
Q ss_pred ccHHHHHHHHhcCCCc-eEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhCCc
Q 020423 253 LKYEYYYALLRDFPDL-TFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW 304 (326)
Q Consensus 253 ~~~~~i~~i~~~~~~i-PVIa~GgI~s~~da~~~l~~GaD~V~iGRall~dP~ 304 (326)
.+.+.++++++.. ++ ||+..|||++++++.+++..|||+|.+|+++..||.
T Consensus 170 ~~~e~I~~v~~~~-~~~pvivGGGIrs~e~a~~~l~~GAD~VVVGSai~~d~~ 221 (232)
T PRK04169 170 VPPEMVKAVKKAL-DITPLIYGGGIRSPEQARELMAAGADTIVVGNIIEEDPK 221 (232)
T ss_pred CCHHHHHHHHHhc-CCCcEEEECCCCCHHHHHHHHHhCCCEEEEChHHhhCHH
Confidence 3467787777654 77 999999999999999999999999999999999998
|
|
| >PRK07695 transcriptional regulator TenI; Provisional | Back alignment and domain information |
|---|
Probab=98.16 E-value=4.3e-05 Score=67.34 Aligned_cols=75 Identities=13% Similarity=0.162 Sum_probs=54.6
Q ss_pred hhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHh
Q 020423 222 SSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 301 (326)
Q Consensus 222 le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~ 301 (326)
.++.|+|++.++...... +. +..++..++.++++.+.. ++||++.||| +++++.++++.|+|+|++++++..
T Consensus 111 a~~~Gadyi~~g~v~~t~---~k---~~~~~~g~~~l~~~~~~~-~ipvia~GGI-~~~~~~~~~~~Ga~gvav~s~i~~ 182 (201)
T PRK07695 111 AEKNGADYVVYGHVFPTD---CK---KGVPARGLEELSDIARAL-SIPVIAIGGI-TPENTRDVLAAGVSGIAVMSGIFS 182 (201)
T ss_pred HHHcCCCEEEECCCCCCC---CC---CCCCCCCHHHHHHHHHhC-CCCEEEEcCC-CHHHHHHHHHcCCCEEEEEHHHhc
Confidence 356899999764322110 00 111233577787777654 8999999999 999999999999999999999996
Q ss_pred CCc
Q 020423 302 NPW 304 (326)
Q Consensus 302 dP~ 304 (326)
.++
T Consensus 183 ~~~ 185 (201)
T PRK07695 183 SAN 185 (201)
T ss_pred CCC
Confidence 444
|
|
| >COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.00031 Score=62.24 Aligned_cols=212 Identities=13% Similarity=0.136 Sum_probs=120.1
Q ss_pred CccccccCeecCCcEEEccCCCCChHH-HHHHHHHcCCCcEEEecceeeccccccccchhhhhh-cCCCCCcEEEEec-C
Q 020423 57 TKAEMVARQYLPPWFSVAPMMDWTDNH-YRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLA-FSPEQHPIVLQIG-G 133 (326)
Q Consensus 57 ~~p~~ig~~~l~nrivlAPM~~~s~~~-~r~~~~~~Gg~gli~te~~~~~~~~~~~~~~~~~~~-~~~~~~piivQL~-g 133 (326)
-++++|++.++..|+++. -..+++.+ +....++.| ..++..-+=.++. .....+.+++ +.+.+-.+..|-. +
T Consensus 5 ~d~l~i~g~~f~SRLllG-Tgky~s~~~~~~av~asg-~~ivTvAlRR~~~---~~~~~~~~l~~l~~~~~~~LPNTaGc 79 (262)
T COG2022 5 DDMLTIAGKTFDSRLLLG-TGKYPSPAVLAEAVRASG-SEIVTVALRRVNA---TRPGGDGILDLLIPLGVTLLPNTAGC 79 (262)
T ss_pred ccceeecCeeeeeeEEEe-cCCCCCHHHHHHHHHhcC-CceEEEEEEeecc---cCCCcchHHHHhhhcCcEeCCCcccc
Confidence 467999999999999873 33465554 455566554 4444332222211 1111223333 2333333334432 4
Q ss_pred CCHHHHHHHHHHHHHCC-CCEEEecC-CCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC--CCcEEEEeccCCCCCc
Q 020423 134 SNLDNLAKATELANAYN-YDEINLNC-GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHD 209 (326)
Q Consensus 134 ~~~~~f~~aA~~a~~aG-~d~Iein~-g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~--~~pv~vK~r~g~~~~~ 209 (326)
.+.++-...|+.++|++ -|+|-|.. +++. .|+-++- |.+++...-+ |+-|..-+ . +
T Consensus 80 ~taeEAv~tArlARE~~~t~wiKlEVi~d~~-----------tLlPD~~---etl~Aae~Lv~eGF~VlPY~-----~-d 139 (262)
T COG2022 80 RTAEEAVRTARLAREALGTNWIKLEVIGDEK-----------TLLPDPI---ETLKAAEQLVKEGFVVLPYT-----T-D 139 (262)
T ss_pred CCHHHHHHHHHHHHHHccCCeEEEEEecCCc-----------ccCCChH---HHHHHHHHHHhCCCEEeecc-----C-C
Confidence 67899999999999974 57766643 2221 1122222 2333333222 33332211 1 1
Q ss_pred cHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhC
Q 020423 210 SYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKG 289 (326)
Q Consensus 210 ~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~G 289 (326)
|. .+++.+++.|+..+-=-+ .+ . |. .....+-..+.-++.+. ++|||.--||.++.|+..+++.|
T Consensus 140 ---D~--v~arrLee~GcaavMPl~-aP-I-GS------g~G~~n~~~l~iiie~a-~VPviVDAGiG~pSdAa~aMElG 204 (262)
T COG2022 140 ---DP--VLARRLEEAGCAAVMPLG-AP-I-GS------GLGLQNPYNLEIIIEEA-DVPVIVDAGIGTPSDAAQAMELG 204 (262)
T ss_pred ---CH--HHHHHHHhcCceEecccc-cc-c-cC------CcCcCCHHHHHHHHHhC-CCCEEEeCCCCChhHHHHHHhcc
Confidence 11 146788899987763111 10 0 10 11122334455566666 99999999999999999999999
Q ss_pred CChhhhhHHHHh--CCchhHH
Q 020423 290 AHHVMVGRAAYQ--NPWYTLG 308 (326)
Q Consensus 290 aD~V~iGRall~--dP~l~~~ 308 (326)
||+|.+-+|.-. ||-.+.+
T Consensus 205 ~DaVL~NTAiA~A~DPv~MA~ 225 (262)
T COG2022 205 ADAVLLNTAIARAKDPVAMAR 225 (262)
T ss_pred cceeehhhHhhccCChHHHHH
Confidence 999999999764 5655443
|
|
| >PRK11750 gltB glutamate synthase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=98.14 E-value=3.4e-05 Score=84.15 Aligned_cols=115 Identities=15% Similarity=0.075 Sum_probs=75.5
Q ss_pred CHHHHHHHHHHHHhcC-CCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHH
Q 020423 178 DPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYE 256 (326)
Q Consensus 178 r~~~l~eiv~avr~~~-~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~ 256 (326)
.++-+.+++..+|+.. +.||+||+-.+... .++ +.-..++|+|.|+|+|.....+. ++..........|+
T Consensus 979 SieDL~qlI~~Lk~~~~~~~I~VKl~a~~~v-g~i-------a~gvaka~aD~I~IdG~~GGTGA-ap~~~~~~~GlP~e 1049 (1485)
T PRK11750 979 SIEDLAQLIFDLKQVNPKALVSVKLVSEPGV-GTI-------ATGVAKAYADLITISGYDGGTGA-SPLTSVKYAGSPWE 1049 (1485)
T ss_pred CHHHHHHHHHHHHHhCCCCcEEEEEccCCCc-cHH-------HhChhhcCCCEEEEeCCCCCccc-ccHHHHhhCCccHH
Confidence 3677888899998876 67999998875221 222 22234699999999987643221 11000000011243
Q ss_pred H-HHH----HHhcC--CCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHh
Q 020423 257 Y-YYA----LLRDF--PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 301 (326)
Q Consensus 257 ~-i~~----i~~~~--~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~ 301 (326)
. +.+ +.+.- -++.+++.||+.|+.|+.+++..|||.|.+||++|-
T Consensus 1050 ~gL~~~~~~L~~~glR~rv~l~a~Ggl~t~~Dv~kA~aLGAd~~~~gt~~li 1101 (1485)
T PRK11750 1050 LGLAETHQALVANGLRHKIRLQVDGGLKTGLDVIKAAILGAESFGFGTGPMV 1101 (1485)
T ss_pred HHHHHHHHHHHhcCCCcceEEEEcCCcCCHHHHHHHHHcCCcccccchHHHH
Confidence 2 222 22221 258999999999999999999999999999999874
|
|
| >cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea | Back alignment and domain information |
|---|
Probab=98.14 E-value=4.6e-05 Score=68.77 Aligned_cols=140 Identities=16% Similarity=0.121 Sum_probs=84.9
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccC-CC--CCccH
Q 020423 135 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIG-VD--DHDSY 211 (326)
Q Consensus 135 ~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g-~~--~~~~~ 211 (326)
+.+.+...++.+.+.|+|+|.+...... ..+ ....+.+.++.+..+ ..+.|+.+-.... .. +..+.
T Consensus 74 ~~~~~~~~v~~a~~~Ga~~v~~~~~~~~------~~~----~~~~~~i~~v~~~~~-~~g~~~iie~~~~g~~~~~~~~~ 142 (235)
T cd00958 74 NDKVLVASVEDAVRLGADAVGVTVYVGS------EEE----REMLEELARVAAEAH-KYGLPLIAWMYPRGPAVKNEKDP 142 (235)
T ss_pred CchhhhcCHHHHHHCCCCEEEEEEecCC------chH----HHHHHHHHHHHHHHH-HcCCCEEEEEeccCCcccCccCH
Confidence 4455666678899999999955431110 000 011223333333322 3488888744331 10 00112
Q ss_pred HHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCC--CCHHH----HHHH
Q 020423 212 NQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI--NTVDE----VNAA 285 (326)
Q Consensus 212 ~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI--~s~~d----a~~~ 285 (326)
+.++..++...+.|+|+|-+.. + ...+.++++.+.. .+||++.||+ .|.++ +.++
T Consensus 143 -~~i~~~~~~a~~~GaD~Ik~~~-~----------------~~~~~~~~i~~~~-~~pvv~~GG~~~~~~~~~l~~~~~~ 203 (235)
T cd00958 143 -DLIAYAARIGAELGADIVKTKY-T----------------GDAESFKEVVEGC-PVPVVIAGGPKKDSEEEFLKMVYDA 203 (235)
T ss_pred -HHHHHHHHHHHHHCCCEEEecC-C----------------CCHHHHHHHHhcC-CCCEEEeCCCCCCCHHHHHHHHHHH
Confidence 2223234455678999998741 0 1256677777654 7999999997 56665 7778
Q ss_pred HHhCCChhhhhHHHHhCCc
Q 020423 286 LRKGAHHVMVGRAAYQNPW 304 (326)
Q Consensus 286 l~~GaD~V~iGRall~dP~ 304 (326)
++.||++|.+||.++..++
T Consensus 204 ~~~Ga~gv~vg~~i~~~~d 222 (235)
T cd00958 204 MEAGAAGVAVGRNIFQRPD 222 (235)
T ss_pred HHcCCcEEEechhhhcCCC
Confidence 8899999999999998887
|
Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies. |
| >TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family | Back alignment and domain information |
|---|
Probab=98.13 E-value=6.8e-05 Score=68.37 Aligned_cols=187 Identities=11% Similarity=0.096 Sum_probs=114.7
Q ss_pred HcCCCcEEEecceeecccccc--ccchhhhhh----c-CCCCCcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCC
Q 020423 90 LISKHAWLYTEMLAAETIIYQ--QGNLDRFLA----F-SPEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPS 162 (326)
Q Consensus 90 ~~Gg~gli~te~~~~~~~~~~--~~~~~~~~~----~-~~~~~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~ 162 (326)
+.||++-++.|-....+.... .+....+.. + ..-+-|+.+|+.-+++. .+...|..+|+|.|.+|.-+-.
T Consensus 38 ~~~GvD~viveN~~d~P~~~~~~p~tva~m~~i~~~v~~~~~~p~GvnvL~nd~~---aal~iA~a~ga~FIRv~~~~g~ 114 (257)
T TIGR00259 38 EEGGVDAVMFENFFDAPFLKEVDPETVAAMAVIAGQLKSDVSIPLGINVLRNDAV---AALAIAMAVGAKFIRVNVLTGV 114 (257)
T ss_pred HhCCCCEEEEecCCCCCCcCCCCHHHHHHHHHHHHHHHHhcCCCeeeeeecCCCH---HHHHHHHHhCCCEEEEccEeee
Confidence 458899999997766554321 111111111 1 23456899998766643 3445667789999999854433
Q ss_pred CcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEE--EEeccCCC-CCccHHHHHHHHHHHhhhCCccEEEEecCCccc
Q 020423 163 PKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVS--VKCRIGVD-DHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALL 239 (326)
Q Consensus 163 ~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~--vK~r~g~~-~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~ 239 (326)
. -+|+ | -++.+...+.+.-+.+.. ++.+. |+...+.. ...+++|..+ ......+.|.|+|+|...
T Consensus 115 ~---~~d~-G-~~~~~a~e~~r~r~~l~~--~v~i~adV~~kh~~~l~~~~~~e~a~---~~~~~~~aDavivtG~~T-- 182 (257)
T TIGR00259 115 Y---ASDQ-G-IIEGNAGELIRYKKLLGS--EVKILADIVVKHAVHLGNRDLESIAL---DTVERGLADAVILSGKTT-- 182 (257)
T ss_pred E---eccc-c-cccccHHHHHHHHHHcCC--CcEEEeceeecccCcCCCCCHHHHHH---HHHHhcCCCEEEECcCCC--
Confidence 1 1232 3 455566666655555542 33322 22222221 1234544433 223345599999998643
Q ss_pred CCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhCC
Q 020423 240 NGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNP 303 (326)
Q Consensus 240 ~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~dP 303 (326)
| .+.+|+.+.++++...++||+.+||+ +++.+.++++. +|++.+|+.+=.+.
T Consensus 183 -G---------~~~d~~~l~~vr~~~~~~PvllggGv-t~eNv~e~l~~-adGviVgS~~K~~G 234 (257)
T TIGR00259 183 -G---------TEVDLELLKLAKETVKDTPVLAGSGV-NLENVEELLSI-ADGVIVATTIKKDG 234 (257)
T ss_pred -C---------CCCCHHHHHHHHhccCCCeEEEECCC-CHHHHHHHHhh-CCEEEECCCcccCC
Confidence 2 12458888888765668999999999 89999999987 99999999987544
|
Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis. |
| >PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.00012 Score=65.85 Aligned_cols=155 Identities=15% Similarity=0.230 Sum_probs=98.6
Q ss_pred cEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCC--CCCCcccCCCCccccccCCHHHHHHHHHHHHhcC-CCcEEEEec
Q 020423 126 PIVLQIGGSNLDNLAKATELANAYNYDEINLNCG--CPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCR 202 (326)
Q Consensus 126 piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g--~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~-~~pv~vK~r 202 (326)
.+.++|.+.++..+.+..+.++++|+|.+-+-.- .-.++ . .|| .++++++|+.. +.++.+++-
T Consensus 8 ~i~pSi~~~d~~~l~~~~~~l~~~~~~~~H~DimDg~fvpn-~---~~G----------~~~v~~lr~~~~~~~lDvHLm 73 (228)
T PTZ00170 8 IIAPSILAADFSKLADEAQDVLSGGADWLHVDVMDGHFVPN-L---SFG----------PPVVKSLRKHLPNTFLDCHLM 73 (228)
T ss_pred EEehhHhhcCHHHHHHHHHHHHHcCCCEEEEecccCccCCC-c---CcC----------HHHHHHHHhcCCCCCEEEEEC
Confidence 4667788889999999999999999998766542 21111 1 144 35677777776 889999987
Q ss_pred cCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCccc-----------CCC------CcC--------------------
Q 020423 203 IGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALL-----------NGI------SPA-------------------- 245 (326)
Q Consensus 203 ~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~-----------~g~------~~~-------------------- 245 (326)
.. +.+..+ +.+.++|+|++++|...... .|. .+.
T Consensus 74 ~~-----~p~~~i----~~~~~~Gad~itvH~ea~~~~~~~~l~~ik~~G~~~gval~p~t~~e~l~~~l~~~~vD~Vl~ 144 (228)
T PTZ00170 74 VS-----NPEKWV----DDFAKAGASQFTFHIEATEDDPKAVARKIREAGMKVGVAIKPKTPVEVLFPLIDTDLVDMVLV 144 (228)
T ss_pred CC-----CHHHHH----HHHHHcCCCEEEEeccCCchHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHccchhhhHHh
Confidence 42 222222 23346899999998542100 010 000
Q ss_pred -------CcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhCCc
Q 020423 246 -------ENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW 304 (326)
Q Consensus 246 -------~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~dP~ 304 (326)
+.....+...+.+.++++...+..|...||| +.+.+.++.+.|||.+.+||++...++
T Consensus 145 m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~I~VdGGI-~~~ti~~~~~aGad~iVvGsaI~~a~d 209 (228)
T PTZ00170 145 MTVEPGFGGQSFMHDMMPKVRELRKRYPHLNIQVDGGI-NLETIDIAADAGANVIVAGSSIFKAKD 209 (228)
T ss_pred hhcccCCCCcEecHHHHHHHHHHHHhcccCeEEECCCC-CHHHHHHHHHcCCCEEEEchHHhCCCC
Confidence 0000000012344444444445778889999 678999999999999999999987666
|
|
| >TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type | Back alignment and domain information |
|---|
Probab=98.12 E-value=4.1e-05 Score=69.57 Aligned_cols=146 Identities=18% Similarity=0.161 Sum_probs=92.5
Q ss_pred EEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHH-HhcCCCcEEEEe----
Q 020423 127 IVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVI-AANTNVPVSVKC---- 201 (326)
Q Consensus 127 iivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~av-r~~~~~pv~vK~---- 201 (326)
+-+|+.|--. . +.++..-++|+|.|-|+..-- .+.. -+++++.++.+.. .+.+-..+.+|.
T Consensus 77 ~~v~vGGGIr--~-e~v~~~l~aGa~rVvIGS~av-----~~~~------i~~~~~~~i~~~fG~~~IvvsiD~k~~~~g 142 (253)
T TIGR02129 77 GGLQVGGGIN--D-TNAQEWLDEGASHVIVTSWLF-----TKGK------FDLKRLKEIVSLVGKDRLIVDLSCRKTQDG 142 (253)
T ss_pred CCEEEeCCcC--H-HHHHHHHHcCCCEEEECcHHH-----hCCC------CCHHHHHHHHHHhCCCCEEEEEEEEEcCCC
Confidence 5678776442 2 677778889999999953110 0000 2488888888887 343333344441
Q ss_pred -----ccCCCCCccHHHHH-HHHHHHhhhCCccEEEEecC--CcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEe
Q 020423 202 -----RIGVDDHDSYNQLC-DFIYKVSSLSPTRHFIIHSR--KALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLN 273 (326)
Q Consensus 202 -----r~g~~~~~~~~e~~-~~ia~~le~~Gvd~I~v~~~--~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~ 273 (326)
.-||.+.... ++. + +.+.+++. +..|.++.- +.+..| .+++++.++.+. +++|||++
T Consensus 143 ~~~V~~~GW~~~t~~-~~~~e-~~~~~~~~-~~~il~TdI~rDGtl~G-----------~dlel~~~l~~~-~~ipVIAS 207 (253)
T TIGR02129 143 RWIVAMNKWQTITDL-ELNAE-TLEELSKY-CDEFLIHAADVEGLCKG-----------IDEELVSKLGEW-SPIPITYA 207 (253)
T ss_pred cEEEEECCCcccCCC-ChHHH-HHHHHHhh-CCEEEEeeecccCcccc-----------CCHHHHHHHHhh-CCCCEEEE
Confidence 1235442221 122 3 23345556 888888743 333222 347888888766 59999999
Q ss_pred CCCCCHHHHHHHHHh--CCChhhhhHHHHh
Q 020423 274 GGINTVDEVNAALRK--GAHHVMVGRAAYQ 301 (326)
Q Consensus 274 GgI~s~~da~~~l~~--GaD~V~iGRall~ 301 (326)
||+.+.+|+.++.+. |...+.+|++++.
T Consensus 208 GGv~s~eDi~~l~~~~~g~~~aIvG~Alf~ 237 (253)
T TIGR02129 208 GGAKSIDDLDLVDELSKGKVDLTIGSALDI 237 (253)
T ss_pred CCCCCHHHHHHHHHhcCCCCcEEeeehHHH
Confidence 999999999998553 6777999999874
|
This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut. |
| >PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=98.11 E-value=9.6e-06 Score=73.34 Aligned_cols=85 Identities=16% Similarity=0.155 Sum_probs=66.1
Q ss_pred HHHHhhh-CCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhh
Q 020423 218 IYKVSSL-SPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVG 296 (326)
Q Consensus 218 ia~~le~-~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iG 296 (326)
+++.+++ .|+|.+|+-.-+....+ .+.+.+.++++.+. +++||...|||+|.++++++++.|||-|.+|
T Consensus 36 ~a~~~~~~~Ga~~l~ivDLd~a~~~---------~~~n~~~I~~i~~~-~~~pi~vGGGIrs~e~v~~~l~~Ga~kvvig 105 (234)
T PRK13587 36 SIAYYSQFECVNRIHIVDLIGAKAQ---------HAREFDYIKSLRRL-TTKDIEVGGGIRTKSQIMDYFAAGINYCIVG 105 (234)
T ss_pred HHHHHHhccCCCEEEEEECcccccC---------CcchHHHHHHHHhh-cCCeEEEcCCcCCHHHHHHHHHCCCCEEEEC
Confidence 3455556 79999999765432111 22357888888875 4899999999999999999999999999999
Q ss_pred HHHHhCCchhHHhHHH
Q 020423 297 RAAYQNPWYTLGHVDT 312 (326)
Q Consensus 297 Rall~dP~l~~~~i~~ 312 (326)
+..+.||+++.+..+.
T Consensus 106 t~a~~~~~~l~~~~~~ 121 (234)
T PRK13587 106 TKGIQDTDWLKEMAHT 121 (234)
T ss_pred chHhcCHHHHHHHHHH
Confidence 9999999965444443
|
|
| >cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF) | Back alignment and domain information |
|---|
Probab=98.10 E-value=6e-05 Score=68.14 Aligned_cols=143 Identities=13% Similarity=0.160 Sum_probs=88.5
Q ss_pred EEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCC-
Q 020423 127 IVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGV- 205 (326)
Q Consensus 127 iivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~- 205 (326)
+-+|+.|. ... .+-++.+.++|++-|-|+. ...++ +++.++++...+. .+-+++-.+-+.
T Consensus 79 ~~v~vgGG-ir~-~edv~~~l~~Ga~~viigt---------------~~~~~-~~~~~~~~~~~~~-~iivslD~~~~~~ 139 (233)
T cd04723 79 LGLWVDGG-IRS-LENAQEWLKRGASRVIVGT---------------ETLPS-DDDEDRLAALGEQ-RLVLSLDFRGGQL 139 (233)
T ss_pred CCEEEecC-cCC-HHHHHHHHHcCCCeEEEcc---------------eeccc-hHHHHHHHhcCCC-CeEEEEeccCCee
Confidence 34677652 222 2234445567888887742 12245 7888888887431 122333322221
Q ss_pred ---CCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHH
Q 020423 206 ---DDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEV 282 (326)
Q Consensus 206 ---~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da 282 (326)
....++.+++ +.+++. ++.+++..-... |. ....+++.+.++.+. +++||++.|||++.+|+
T Consensus 140 ~~~~~~~~~~~~~----~~~~~~-~~~li~~di~~~--G~-------~~g~~~~~~~~i~~~-~~ipvi~~GGi~s~edi 204 (233)
T cd04723 140 LKPTDFIGPEELL----RRLAKW-PEELIVLDIDRV--GS-------GQGPDLELLERLAAR-ADIPVIAAGGVRSVEDL 204 (233)
T ss_pred ccccCcCCHHHHH----HHHHHh-CCeEEEEEcCcc--cc-------CCCcCHHHHHHHHHh-cCCCEEEeCCCCCHHHH
Confidence 1112344433 344556 888887654321 11 012347778888776 48999999999999999
Q ss_pred HHHHHhCCChhhhhHHHHhCC
Q 020423 283 NAALRKGAHHVMVGRAAYQNP 303 (326)
Q Consensus 283 ~~~l~~GaD~V~iGRall~dP 303 (326)
.++++.|+++|.+|++++..-
T Consensus 205 ~~l~~~G~~~vivGsal~~g~ 225 (233)
T cd04723 205 ELLKKLGASGALVASALHDGG 225 (233)
T ss_pred HHHHHcCCCEEEEehHHHcCC
Confidence 999999999999999998763
|
The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl |
| >PRK05581 ribulose-phosphate 3-epimerase; Validated | Back alignment and domain information |
|---|
Probab=98.10 E-value=7.6e-05 Score=66.46 Aligned_cols=156 Identities=17% Similarity=0.220 Sum_probs=87.8
Q ss_pred EEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCC
Q 020423 127 IVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVD 206 (326)
Q Consensus 127 iivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~ 206 (326)
+.+.|...++..+.+.++.+.+.|+|.|++-... +.+.++..+..+.++++++.++.++.+-+-..
T Consensus 6 ~~~s~~~~~~~~~~~~~~~~~~~G~~~i~l~~~d------------~~~~~~~~~~~~~~~~i~~~~~~~~~v~l~v~-- 71 (220)
T PRK05581 6 IAPSILSADFARLGEEVKAVEAAGADWIHVDVMD------------GHFVPNLTIGPPVVEAIRKVTKLPLDVHLMVE-- 71 (220)
T ss_pred EEcchhcCCHHHHHHHHHHHHHcCCCEEEEeCcc------------CCcCCCcCcCHHHHHHHHhcCCCcEEEEeeeC--
Confidence 6677888899999999999999999999994211 11111222334566666655544443333222
Q ss_pred CCccHHHHHHHHHHHhhhCCccEEEEecCCccc----------CCC---------Cc----------CC---------cC
Q 020423 207 DHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALL----------NGI---------SP----------AE---------NR 248 (326)
Q Consensus 207 ~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~----------~g~---------~~----------~~---------~~ 248 (326)
+ ..+. +... .+.|+|.+++|+..... .+. +. .+ ..
T Consensus 72 d---~~~~---i~~~-~~~g~d~v~vh~~~~~~~~~~~~~~~~~~~~~g~~~~~~t~~e~~~~~~~~~d~i~~~~~~~g~ 144 (220)
T PRK05581 72 N---PDRY---VPDF-AKAGADIITFHVEASEHIHRLLQLIKSAGIKAGLVLNPATPLEPLEDVLDLLDLVLLMSVNPGF 144 (220)
T ss_pred C---HHHH---HHHH-HHcCCCEEEEeeccchhHHHHHHHHHHcCCEEEEEECCCCCHHHHHHHHhhCCEEEEEEECCCC
Confidence 1 1111 2222 25677777777542100 000 00 00 00
Q ss_pred CCCCccH---HHHHHHHhcCC--C--ceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhCCc
Q 020423 249 TIPPLKY---EYYYALLRDFP--D--LTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW 304 (326)
Q Consensus 249 ~~~~~~~---~~i~~i~~~~~--~--iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~dP~ 304 (326)
.-....+ +.+.++++... + .+|...|||+. +++.++++.|+|+|.+|++++.+++
T Consensus 145 tg~~~~~~~~~~i~~~~~~~~~~~~~~~i~v~GGI~~-~nv~~l~~~GaD~vvvgSai~~~~d 206 (220)
T PRK05581 145 GGQKFIPEVLEKIRELRKLIDERGLDILIEVDGGINA-DNIKECAEAGADVFVAGSAVFGAPD 206 (220)
T ss_pred CcccccHHHHHHHHHHHHHHHhcCCCceEEEECCCCH-HHHHHHHHcCCCEEEEChhhhCCCC
Confidence 0001112 23333332211 1 33567799976 8999999999999999999998877
|
|
| >COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.00018 Score=62.66 Aligned_cols=59 Identities=24% Similarity=0.254 Sum_probs=48.6
Q ss_pred ccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhCCchhHHhHHHhh
Q 020423 253 LKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAI 314 (326)
Q Consensus 253 ~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~dP~l~~~~i~~~~ 314 (326)
.++++++++.+ .+.+||+-|+++||+++.++++.||++|.||.|+ .+|....++..+.+
T Consensus 168 pDf~lvk~l~~--~~~~vIAEGr~~tP~~Ak~a~~~Ga~aVvVGsAI-TRp~~It~~F~~~i 226 (229)
T COG3010 168 PDFQLVKQLSD--AGCRVIAEGRYNTPEQAKKAIEIGADAVVVGSAI-TRPEEITQWFVDAI 226 (229)
T ss_pred CcHHHHHHHHh--CCCeEEeeCCCCCHHHHHHHHHhCCeEEEECccc-CCHHHHHHHHHHHH
Confidence 46888888876 3899999999999999999999999999999875 56665555555443
|
|
| >PRK13111 trpA tryptophan synthase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.00019 Score=65.82 Aligned_cols=169 Identities=17% Similarity=0.149 Sum_probs=97.5
Q ss_pred EEEEec--CCCHHHHHHHHHHHHHCCCCEEEecCCC--CCCc---ccCCCCcccccc--CCHHHHHHHHHHHH-hcCCCc
Q 020423 127 IVLQIG--GSNLDNLAKATELANAYNYDEINLNCGC--PSPK---VAGHGCFGVSLM--LDPKFVGEAMSVIA-ANTNVP 196 (326)
Q Consensus 127 iivQL~--g~~~~~f~~aA~~a~~aG~d~Iein~g~--P~~~---~~r~d~yGgsl~--~r~~~l~eiv~avr-~~~~~p 196 (326)
++.=+. -.+.+.+.+.++.+.+.|+|.|||-+-- |... +++. +--+|. -+.+.+.++++.+| +..+.|
T Consensus 14 li~yi~aG~P~~~~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a--~~~AL~~G~~~~~~~~~~~~~r~~~~~~p 91 (258)
T PRK13111 14 LIPYITAGDPDLETSLEIIKALVEAGADIIELGIPFSDPVADGPVIQAA--SLRALAAGVTLADVFELVREIREKDPTIP 91 (258)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCcccCHHHHHH--HHHHHHcCCCHHHHHHHHHHHHhcCCCCC
Confidence 444443 3477899999999999999999997532 2210 0000 000111 24567788999998 445778
Q ss_pred EEEEecc------CCCC----------------CccHHHHHHHHHHHhhhCCccEEE-EecCCc---------------c
Q 020423 197 VSVKCRI------GVDD----------------HDSYNQLCDFIYKVSSLSPTRHFI-IHSRKA---------------L 238 (326)
Q Consensus 197 v~vK~r~------g~~~----------------~~~~~e~~~~ia~~le~~Gvd~I~-v~~~~~---------------~ 238 (326)
+.+=.=. |.+. ...++|..+ +...+.+.|++.|. ++..+. +
T Consensus 92 ~vlm~Y~N~i~~~G~e~f~~~~~~aGvdGviipDLp~ee~~~-~~~~~~~~gl~~I~lvap~t~~eri~~i~~~s~gfIY 170 (258)
T PRK13111 92 IVLMTYYNPIFQYGVERFAADAAEAGVDGLIIPDLPPEEAEE-LRAAAKKHGLDLIFLVAPTTTDERLKKIASHASGFVY 170 (258)
T ss_pred EEEEecccHHhhcCHHHHHHHHHHcCCcEEEECCCCHHHHHH-HHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCCcEE
Confidence 6532111 1110 001223222 23344556777776 332221 0
Q ss_pred ---cCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHh
Q 020423 239 ---LNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 301 (326)
Q Consensus 239 ---~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~ 301 (326)
..|.++.. ...+....+.+.++++. .++||+..+||.+++++.++++. ||+|.+|++++.
T Consensus 171 ~vs~~GvTG~~-~~~~~~~~~~i~~vk~~-~~~pv~vGfGI~~~e~v~~~~~~-ADGviVGSaiv~ 233 (258)
T PRK13111 171 YVSRAGVTGAR-SADAADLAELVARLKAH-TDLPVAVGFGISTPEQAAAIAAV-ADGVIVGSALVK 233 (258)
T ss_pred EEeCCCCCCcc-cCCCccHHHHHHHHHhc-CCCcEEEEcccCCHHHHHHHHHh-CCEEEEcHHHHH
Confidence 01222211 11122223466666654 59999999999999999999975 999999999863
|
|
| >TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase | Back alignment and domain information |
|---|
Probab=98.05 E-value=1.9e-05 Score=70.93 Aligned_cols=85 Identities=19% Similarity=0.302 Sum_probs=67.6
Q ss_pred HHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhH
Q 020423 218 IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGR 297 (326)
Q Consensus 218 ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGR 297 (326)
+++.+++.|++.+++-.-+....| ...+.+.++++.+.. ++||...|||.+.++++++++.|||.|.+|+
T Consensus 33 ~a~~~~~~g~~~l~v~dl~~~~~g---------~~~~~~~i~~i~~~~-~~pi~~ggGI~~~ed~~~~~~~Ga~~vvlgs 102 (230)
T TIGR00007 33 AAKKWEEEGAERIHVVDLDGAKEG---------GPVNLPVIKKIVRET-GVPVQVGGGIRSLEDVEKLLDLGVDRVIIGT 102 (230)
T ss_pred HHHHHHHcCCCEEEEEeCCccccC---------CCCcHHHHHHHHHhc-CCCEEEeCCcCCHHHHHHHHHcCCCEEEECh
Confidence 345567899999999765543222 122477788887764 8999999999999999999999999999999
Q ss_pred HHHhCCchhHHhHHH
Q 020423 298 AAYQNPWYTLGHVDT 312 (326)
Q Consensus 298 all~dP~l~~~~i~~ 312 (326)
.++.||.++.+.++.
T Consensus 103 ~~l~d~~~~~~~~~~ 117 (230)
T TIGR00007 103 AAVENPDLVKELLKE 117 (230)
T ss_pred HHhhCHHHHHHHHHH
Confidence 999999976665555
|
Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317). |
| >TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type | Back alignment and domain information |
|---|
Probab=98.03 E-value=1.9e-05 Score=71.76 Aligned_cols=78 Identities=19% Similarity=0.177 Sum_probs=63.8
Q ss_pred HHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhH
Q 020423 218 IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGR 297 (326)
Q Consensus 218 ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGR 297 (326)
+++.+++.|++++||-.- | ++ +.+.+.++.+.. ++||...|||++ ++++++++.|||.|.+|+
T Consensus 43 ~A~~~~~~Ga~~lHvVDL-----g---------~~-n~~~i~~i~~~~-~~~v~vGGGIr~-e~v~~~l~aGa~rVvIGS 105 (253)
T TIGR02129 43 YAKLYKDDGVKGCHVIML-----G---------PN-NDDAAKEALHAY-PGGLQVGGGIND-TNAQEWLDEGASHVIVTS 105 (253)
T ss_pred HHHHHHHcCCCEEEEEEC-----C---------CC-cHHHHHHHHHhC-CCCEEEeCCcCH-HHHHHHHHcCCCEEEECc
Confidence 355677899999998753 1 22 578888888775 899999999998 999999999999999999
Q ss_pred HHHhC----CchhHHhHHH
Q 020423 298 AAYQN----PWYTLGHVDT 312 (326)
Q Consensus 298 all~d----P~l~~~~i~~ 312 (326)
+++.| |.++.+..+.
T Consensus 106 ~av~~~~i~~~~~~~i~~~ 124 (253)
T TIGR02129 106 WLFTKGKFDLKRLKEIVSL 124 (253)
T ss_pred HHHhCCCCCHHHHHHHHHH
Confidence 99998 6665555554
|
This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut. |
| >PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4 | Back alignment and domain information |
|---|
Probab=98.01 E-value=8.6e-05 Score=67.74 Aligned_cols=156 Identities=22% Similarity=0.268 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEec------------cCC
Q 020423 138 NLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCR------------IGV 205 (326)
Q Consensus 138 ~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r------------~g~ 205 (326)
+..+.|+...++|+++|-+... ...|||++ +-+..+++.++.|+.-|== .|.
T Consensus 69 d~~~~a~~y~~~GA~aiSVlTe--------~~~F~Gs~--------~dL~~v~~~~~~PvL~KDFIid~~QI~eA~~~GA 132 (254)
T PF00218_consen 69 DPAEIAKAYEEAGAAAISVLTE--------PKFFGGSL--------EDLRAVRKAVDLPVLRKDFIIDPYQIYEARAAGA 132 (254)
T ss_dssp SHHHHHHHHHHTT-SEEEEE----------SCCCHHHH--------HHHHHHHHHSSS-EEEES---SHHHHHHHHHTT-
T ss_pred CHHHHHHHHHhcCCCEEEEECC--------CCCCCCCH--------HHHHHHHHHhCCCcccccCCCCHHHHHHHHHcCC
Confidence 4566777888899999999632 24478775 3467777788899888710 011
Q ss_pred CCC------ccHHHHHHHHHHHhhhCCccEEE-EecCCc----ccCCC--CcCCcCCCC--CccHHHHHHHHhcCC-Cce
Q 020423 206 DDH------DSYNQLCDFIYKVSSLSPTRHFI-IHSRKA----LLNGI--SPAENRTIP--PLKYEYYYALLRDFP-DLT 269 (326)
Q Consensus 206 ~~~------~~~~e~~~~ia~~le~~Gvd~I~-v~~~~~----~~~g~--~~~~~~~~~--~~~~~~i~~i~~~~~-~iP 269 (326)
+-. -+.+.+.+ +.......|.+.+. ||...- ...|. -+-.++... ..+.+...++....+ ++.
T Consensus 133 DaVLLI~~~L~~~~l~~-l~~~a~~lGle~lVEVh~~~El~~al~~~a~iiGINnRdL~tf~vd~~~~~~l~~~ip~~~~ 211 (254)
T PF00218_consen 133 DAVLLIAAILSDDQLEE-LLELAHSLGLEALVEVHNEEELERALEAGADIIGINNRDLKTFEVDLNRTEELAPLIPKDVI 211 (254)
T ss_dssp SEEEEEGGGSGHHHHHH-HHHHHHHTT-EEEEEESSHHHHHHHHHTT-SEEEEESBCTTTCCBHTHHHHHHHCHSHTTSE
T ss_pred CEeehhHHhCCHHHHHH-HHHHHHHcCCCeEEEECCHHHHHHHHHcCCCEEEEeCccccCcccChHHHHHHHhhCcccee
Confidence 000 00111111 12222334444432 332210 00000 001111111 223344445554443 578
Q ss_pred EEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhCCchhHHhHH
Q 020423 270 FTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVD 311 (326)
Q Consensus 270 VIa~GgI~s~~da~~~l~~GaD~V~iGRall~dP~l~~~~i~ 311 (326)
+|+-+||.+++|+..+...|+|+|.||++++..|+ ..+.++
T Consensus 212 ~iseSGI~~~~d~~~l~~~G~davLVGe~lm~~~d-~~~~~~ 252 (254)
T PF00218_consen 212 VISESGIKTPEDARRLARAGADAVLVGEALMRSPD-PGEALR 252 (254)
T ss_dssp EEEESS-SSHHHHHHHCTTT-SEEEESHHHHTSSS-HHHHHH
T ss_pred EEeecCCCCHHHHHHHHHCCCCEEEECHHHhCCCC-HHHHHh
Confidence 99999999999999999999999999999999998 344443
|
1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A .... |
| >cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.00033 Score=60.62 Aligned_cols=75 Identities=19% Similarity=0.081 Sum_probs=55.0
Q ss_pred hhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhC
Q 020423 223 SLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN 302 (326)
Q Consensus 223 e~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~d 302 (326)
.+.|+|+|.++.......+ . ....+..++.++++++. .++||++.||| +.+++.++++.|+|+|.+|++++.+
T Consensus 112 ~~~g~d~i~~~~~~~~~~~---~--~~~~~~~~~~~~~~~~~-~~~pv~a~GGi-~~~~i~~~~~~Ga~~i~~g~~i~~~ 184 (196)
T cd00564 112 EELGADYVGFGPVFPTPTK---P--GAGPPLGLELLREIAEL-VEIPVVAIGGI-TPENAAEVLAAGADGVAVISAITGA 184 (196)
T ss_pred hhcCCCEEEECCccCCCCC---C--CCCCCCCHHHHHHHHHh-CCCCEEEECCC-CHHHHHHHHHcCCCEEEEehHhhcC
Confidence 3579999988654321111 0 01023447777777655 58999999999 5799999999999999999999987
Q ss_pred Cc
Q 020423 303 PW 304 (326)
Q Consensus 303 P~ 304 (326)
++
T Consensus 185 ~~ 186 (196)
T cd00564 185 DD 186 (196)
T ss_pred CC
Confidence 77
|
TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions. |
| >PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.00019 Score=65.41 Aligned_cols=187 Identities=11% Similarity=0.037 Sum_probs=112.7
Q ss_pred HcCCCcEEEecceeeccccccc--cchhhhh----hc-CCCCCcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCC
Q 020423 90 LISKHAWLYTEMLAAETIIYQQ--GNLDRFL----AF-SPEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPS 162 (326)
Q Consensus 90 ~~Gg~gli~te~~~~~~~~~~~--~~~~~~~----~~-~~~~~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~ 162 (326)
..||++-++.|-....+..... +....+. ++ ..-+-|+++|+..+++. .+...|..+|+|.|.+|.-+-.
T Consensus 39 ~~~GvDgiiveN~~D~Py~~~~~~etvaaM~~i~~~v~~~~~~p~GVnvL~nd~~---aalaiA~A~ga~FIRv~~~~g~ 115 (254)
T PF03437_consen 39 EEGGVDGIIVENMGDVPYPKRVGPETVAAMARIAREVRREVSVPVGVNVLRNDPK---AALAIAAATGADFIRVNVFVGA 115 (254)
T ss_pred HHCCCCEEEEecCCCCCccCCCCHHHHHHHHHHHHHHHHhCCCCEEeeeecCCCH---HHHHHHHHhCCCEEEecCEEce
Confidence 4588998888876655542221 1111110 01 22357999999776543 3444566789999998865443
Q ss_pred CcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEe--ccCCCC-CccHHHHHHHHHHHhhhCCccEEEEecCCccc
Q 020423 163 PKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKC--RIGVDD-HDSYNQLCDFIYKVSSLSPTRHFIIHSRKALL 239 (326)
Q Consensus 163 ~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~--r~g~~~-~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~ 239 (326)
. . +|+ |-++.+...+.+.-+.+... +.+...+ ..+..- ..++++.. ....+..++|.|.|+|...
T Consensus 116 ~-~--~d~--G~~~~~a~e~~r~R~~l~a~--v~ilaDV~~kh~~~l~~~~~~~~~---~~a~~~~~aDaviVtG~~T-- 183 (254)
T PF03437_consen 116 Y-V--TDE--GIIEGCAGELLRYRKRLGAD--VKILADVHVKHSSPLATRDLEEAA---KDAVERGGADAVIVTGKAT-- 183 (254)
T ss_pred e-c--ccC--ccccccHHHHHHHHHHcCCC--eEEEeeechhhcccCCCCCHHHHH---HHHHHhcCCCEEEECCccc--
Confidence 2 1 232 34445555555444444322 3332222 222111 12344432 3344678999999998653
Q ss_pred CCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhCCc
Q 020423 240 NGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW 304 (326)
Q Consensus 240 ~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~dP~ 304 (326)
| .+...+.+.++++.. .+||+..+|+ |++.+.++++. ||++.||+.+-.|-.
T Consensus 184 -G---------~~~~~~~l~~vr~~~-~~PVlvGSGv-t~~Ni~~~l~~-ADG~IVGS~~K~~G~ 235 (254)
T PF03437_consen 184 -G---------EPPDPEKLKRVREAV-PVPVLVGSGV-TPENIAEYLSY-ADGAIVGSYFKKDGK 235 (254)
T ss_pred -C---------CCCCHHHHHHHHhcC-CCCEEEecCC-CHHHHHHHHHh-CCEEEEeeeeeeCCE
Confidence 2 123467777777766 4999999998 89999999876 999999999887766
|
It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions. |
| >PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.00069 Score=65.53 Aligned_cols=140 Identities=17% Similarity=0.211 Sum_probs=95.4
Q ss_pred CCcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEecc
Q 020423 124 QHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRI 203 (326)
Q Consensus 124 ~~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~ 203 (326)
+.++.+-|.-.++..+. ++.+.++|+|.+.+|+..+ .+-+.+.++++++. |.-+.+- -.
T Consensus 226 ~~~I~~DLK~~Di~~~v--v~~~a~aGAD~vTVH~ea~-----------------~~ti~~ai~~akk~-GikvgVD-~l 284 (391)
T PRK13307 226 DAFIVADLKTLDTGNLE--ARMAADATADAVVISGLAP-----------------ISTIEKAIHEAQKT-GIYSILD-ML 284 (391)
T ss_pred CCeEEEEecccChhhHH--HHHHHhcCCCEEEEeccCC-----------------HHHHHHHHHHHHHc-CCEEEEE-Ec
Confidence 46799999988988776 7778899999999996322 22355667776653 4444341 11
Q ss_pred CCCCCccHHHHHHHHHHHhhhCCccEEEEecC-CcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHH
Q 020423 204 GVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSR-KALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEV 282 (326)
Q Consensus 204 g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~-~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da 282 (326)
+. .+..+.. ..+ ..++|++.+|.. ... +. ...|+.+.++++...+++|...|||+ .+++
T Consensus 285 np---~tp~e~i---~~l--~~~vD~Vllht~vdp~--~~---------~~~~~kI~~ikk~~~~~~I~VdGGI~-~eti 344 (391)
T PRK13307 285 NV---EDPVKLL---ESL--KVKPDVVELHRGIDEE--GT---------EHAWGNIKEIKKAGGKILVAVAGGVR-VENV 344 (391)
T ss_pred CC---CCHHHHH---HHh--hCCCCEEEEccccCCC--cc---------cchHHHHHHHHHhCCCCcEEEECCcC-HHHH
Confidence 11 1222222 222 468999999853 221 10 11366676666544578999999996 9999
Q ss_pred HHHHHhCCChhhhhHHHHhCCc
Q 020423 283 NAALRKGAHHVMVGRAAYQNPW 304 (326)
Q Consensus 283 ~~~l~~GaD~V~iGRall~dP~ 304 (326)
.++++.|||.+.+||++...++
T Consensus 345 ~~l~~aGADivVVGsaIf~a~D 366 (391)
T PRK13307 345 EEALKAGADILVVGRAITKSKD 366 (391)
T ss_pred HHHHHcCCCEEEEeHHHhCCCC
Confidence 9999999999999999986555
|
|
| >PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.00075 Score=59.85 Aligned_cols=48 Identities=27% Similarity=0.313 Sum_probs=42.1
Q ss_pred cHHHHHHHHhcCC-CceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhC
Q 020423 254 KYEYYYALLRDFP-DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN 302 (326)
Q Consensus 254 ~~~~i~~i~~~~~-~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~d 302 (326)
..+.++++++..+ ++|+++.||| +++.+.++++.|+|+|.+++++...
T Consensus 137 G~~~l~~l~~~~~~~ipvvaiGGI-~~~n~~~~~~aGa~~vav~s~l~~~ 185 (206)
T PRK09140 137 GPAGIKALRAVLPPDVPVFAVGGV-TPENLAPYLAAGAAGFGLGSALYRP 185 (206)
T ss_pred CHHHHHHHHhhcCCCCeEEEECCC-CHHHHHHHHHCCCeEEEEehHhccc
Confidence 3677777777664 6999999999 8999999999999999999999864
|
|
| >cd00452 KDPG_aldolase KDPG and KHG aldolase | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.00049 Score=60.11 Aligned_cols=147 Identities=19% Similarity=0.263 Sum_probs=89.2
Q ss_pred CcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcc---cCCCCc-----cccccCCHHHH--------------
Q 020423 125 HPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKV---AGHGCF-----GVSLMLDPKFV-------------- 182 (326)
Q Consensus 125 ~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~---~r~d~y-----Ggsl~~r~~~l-------------- 182 (326)
.|++.=+.+.+++++.+.++.+.+.|++.||+....+.... .-+..| |+...-..+.+
T Consensus 4 ~~~~~i~r~~~~~~~~~~~~~l~~~G~~~vev~~~~~~~~~~i~~l~~~~~~~~iGag~v~~~~~~~~a~~~Ga~~i~~p 83 (190)
T cd00452 4 QPLVAVLRGDDAEDALALAEALIEGGIRAIEITLRTPGALEAIRALRKEFPEALIGAGTVLTPEQADAAIAAGAQFIVSP 83 (190)
T ss_pred CcEEEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCChhHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCCCEEEcC
Confidence 34555566788999999999999999999999765432100 000011 21111112222
Q ss_pred ---HHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHH
Q 020423 183 ---GEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYY 259 (326)
Q Consensus 183 ---~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~ 259 (326)
.++++..+. .+.++.+ |.. +.+|..+ . .+.|+|+|-+.... +...++++
T Consensus 84 ~~~~~~~~~~~~-~~~~~i~----gv~---t~~e~~~----A-~~~Gad~i~~~p~~---------------~~g~~~~~ 135 (190)
T cd00452 84 GLDPEVVKAANR-AGIPLLP----GVA---TPTEIMQ----A-LELGADIVKLFPAE---------------AVGPAYIK 135 (190)
T ss_pred CCCHHHHHHHHH-cCCcEEC----CcC---CHHHHHH----H-HHCCCCEEEEcCCc---------------ccCHHHHH
Confidence 222222221 2333322 211 3333322 2 35899999874211 11256677
Q ss_pred HHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHH
Q 020423 260 ALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAY 300 (326)
Q Consensus 260 ~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall 300 (326)
.+.+..+++|+++.||| +++.+.++++.|+|+|.+++++.
T Consensus 136 ~l~~~~~~~p~~a~GGI-~~~n~~~~~~~G~~~v~v~s~i~ 175 (190)
T cd00452 136 ALKGPFPQVRFMPTGGV-SLDNAAEWLAAGVVAVGGGSLLP 175 (190)
T ss_pred HHHhhCCCCeEEEeCCC-CHHHHHHHHHCCCEEEEEchhcc
Confidence 77666667999999999 99999999999999999999987
|
This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources. |
| >PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes | Back alignment and domain information |
|---|
Probab=97.96 E-value=1.3e-05 Score=72.16 Aligned_cols=85 Identities=18% Similarity=0.291 Sum_probs=64.1
Q ss_pred HHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhH
Q 020423 218 IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGR 297 (326)
Q Consensus 218 ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGR 297 (326)
+++.+++.|++.+++-.-++...| .+.+++.+.++.+.. .+||...|||++.++++++++.||+-|.+|+
T Consensus 34 ~a~~~~~~g~~~l~ivDLdaa~~g---------~~~n~~~i~~i~~~~-~~~i~vgGGIrs~ed~~~ll~~Ga~~Vvigt 103 (229)
T PF00977_consen 34 VAKAFNEQGADELHIVDLDAAKEG---------RGSNLELIKEIAKET-GIPIQVGGGIRSIEDAERLLDAGADRVVIGT 103 (229)
T ss_dssp HHHHHHHTT-SEEEEEEHHHHCCT---------HHHHHHHHHHHHHHS-SSEEEEESSE-SHHHHHHHHHTT-SEEEESH
T ss_pred HHHHHHHcCCCEEEEEEccCcccC---------chhHHHHHHHHHhcC-CccEEEeCccCcHHHHHHHHHhCCCEEEeCh
Confidence 345567899999999754332111 123577888888876 7999999999999999999999999999999
Q ss_pred HHHhCCchhHHhHHH
Q 020423 298 AAYQNPWYTLGHVDT 312 (326)
Q Consensus 298 all~dP~l~~~~i~~ 312 (326)
..+.||+++.+..+.
T Consensus 104 ~~~~~~~~l~~~~~~ 118 (229)
T PF00977_consen 104 EALEDPELLEELAER 118 (229)
T ss_dssp HHHHCCHHHHHHHHH
T ss_pred HHhhchhHHHHHHHH
Confidence 999999965555544
|
Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F .... |
| >PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.00013 Score=65.73 Aligned_cols=130 Identities=21% Similarity=0.362 Sum_probs=78.1
Q ss_pred EEecC--CCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEecc---
Q 020423 129 LQIGG--SNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRI--- 203 (326)
Q Consensus 129 vQL~g--~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~--- 203 (326)
+|+.| ++.++.. .+.++|++.+-++ .... +++++.++.+..- ++-+++-.+-
T Consensus 76 v~~gGGIrs~edv~----~l~~~G~~~vivG---------------taa~-~~~~l~~~~~~~g---~ivvslD~~~g~v 132 (228)
T PRK04128 76 VQVGGGLRTYESIK----DAYEIGVENVIIG---------------TKAF-DLEFLEKVTSEFE---GITVSLDVKGGRI 132 (228)
T ss_pred EEEcCCCCCHHHHH----HHHHCCCCEEEEC---------------chhc-CHHHHHHHHHHcC---CEEEEEEccCCeE
Confidence 45543 4445443 3455799998774 2223 5888888877652 1223332222
Q ss_pred ---CCCCC--ccHHHHHHHHHHHhhhCCccEEEEecCC--cccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCC
Q 020423 204 ---GVDDH--DSYNQLCDFIYKVSSLSPTRHFIIHSRK--ALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 276 (326)
Q Consensus 204 ---g~~~~--~~~~e~~~~ia~~le~~Gvd~I~v~~~~--~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI 276 (326)
||.+. .+..++.+ .+++. +..+.++.-. ....| ++ ++.+..+++|||++|||
T Consensus 133 ~~~gw~~~~~~~~~~~~~----~~~~~-~~~ii~t~i~~dGt~~G-------------~d---~l~~~~~~~pviasGGv 191 (228)
T PRK04128 133 AVKGWLEESSIKVEDAYE----MLKNY-VNRFIYTSIERDGTLTG-------------IE---EIERFWGDEEFIYAGGV 191 (228)
T ss_pred ecCCCeEcCCCCHHHHHH----HHHHH-hCEEEEEeccchhcccC-------------HH---HHHHhcCCCCEEEECCC
Confidence 33331 12344433 33344 5667666432 22222 12 23333358999999999
Q ss_pred CCHHHHHHHHHhCCChhhhhHHHHhC
Q 020423 277 NTVDEVNAALRKGAHHVMVGRAAYQN 302 (326)
Q Consensus 277 ~s~~da~~~l~~GaD~V~iGRall~d 302 (326)
.+.+|+.++.+.|+++|.+|++++..
T Consensus 192 ~~~~Dl~~l~~~g~~gvivg~al~~g 217 (228)
T PRK04128 192 SSAEDVKKLAEIGFSGVIIGKALYEG 217 (228)
T ss_pred CCHHHHHHHHHCCCCEEEEEhhhhcC
Confidence 99999999999999999999999765
|
|
| >PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional | Back alignment and domain information |
|---|
Probab=97.96 E-value=3.5e-05 Score=70.75 Aligned_cols=85 Identities=18% Similarity=0.276 Sum_probs=66.4
Q ss_pred HHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhH
Q 020423 218 IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGR 297 (326)
Q Consensus 218 ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGR 297 (326)
+++.+++.|++.|++..-+....+ ...+.+.++++.+.. ++||++.|||++.+++.+++..|++.|.+|+
T Consensus 35 ~a~~~~~~g~~~l~i~Dl~~~~~~---------~~~n~~~i~~i~~~~-~~pv~~gGGi~s~~d~~~l~~~G~~~vvigs 104 (258)
T PRK01033 35 AVRIFNEKEVDELIVLDIDASKRG---------SEPNYELIENLASEC-FMPLCYGGGIKTLEQAKKIFSLGVEKVSINT 104 (258)
T ss_pred HHHHHHHcCCCEEEEEECCCCcCC---------CcccHHHHHHHHHhC-CCCEEECCCCCCHHHHHHHHHCCCCEEEECh
Confidence 345667899999999754431111 123578888888764 8999999999999999999999999999999
Q ss_pred HHHhCCchhHHhHHH
Q 020423 298 AAYQNPWYTLGHVDT 312 (326)
Q Consensus 298 all~dP~l~~~~i~~ 312 (326)
+++.+|.++.+.++.
T Consensus 105 ~~~~~~~~~~~~~~~ 119 (258)
T PRK01033 105 AALEDPDLITEAAER 119 (258)
T ss_pred HHhcCHHHHHHHHHH
Confidence 999999965554444
|
|
| >cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00044 Score=63.56 Aligned_cols=132 Identities=16% Similarity=0.105 Sum_probs=92.8
Q ss_pred CcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCC--CcEEEEec
Q 020423 125 HPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTN--VPVSVKCR 202 (326)
Q Consensus 125 ~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~--~pv~vK~r 202 (326)
-|+...+...+++++.+.++.+.+.||..+-++.| .+++.-.+.+++||+.++ .++.+...
T Consensus 75 i~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKvg-----------------~~~~~d~~~v~~vr~~~g~~~~l~vDan 137 (265)
T cd03315 75 VRVAHMLGLGEPAEVAEEARRALEAGFRTFKLKVG-----------------RDPARDVAVVAALREAVGDDAELRVDAN 137 (265)
T ss_pred eEEEEEecCCCHHHHHHHHHHHHHCCCCEEEEecC-----------------CCHHHHHHHHHHHHHhcCCCCEEEEeCC
Confidence 34555555567888999999999999999999764 123555678888888874 34444444
Q ss_pred cCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHH
Q 020423 203 IGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEV 282 (326)
Q Consensus 203 ~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da 282 (326)
.+|+ .++..++ .+.+++.|+++|.- + .++.+++.++++.+.. ++||.+.+.+.+++++
T Consensus 138 ~~~~----~~~a~~~-~~~l~~~~i~~iEe----P------------~~~~d~~~~~~l~~~~-~ipia~dE~~~~~~~~ 195 (265)
T cd03315 138 RGWT----PKQAIRA-LRALEDLGLDYVEQ----P------------LPADDLEGRAALARAT-DTPIMADESAFTPHDA 195 (265)
T ss_pred CCcC----HHHHHHH-HHHHHhcCCCEEEC----C------------CCcccHHHHHHHHhhC-CCCEEECCCCCCHHHH
Confidence 3443 4455553 44567789998851 1 1223467777777664 8999999999999999
Q ss_pred HHHHHhC-CChhhh
Q 020423 283 NAALRKG-AHHVMV 295 (326)
Q Consensus 283 ~~~l~~G-aD~V~i 295 (326)
.++++.+ +|.|++
T Consensus 196 ~~~i~~~~~d~v~~ 209 (265)
T cd03315 196 FRELALGAADAVNI 209 (265)
T ss_pred HHHHHhCCCCEEEE
Confidence 9999854 898877
|
Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions. |
| >PRK08005 epimerase; Validated | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00055 Score=60.75 Aligned_cols=160 Identities=15% Similarity=0.169 Sum_probs=99.2
Q ss_pred EEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCC
Q 020423 127 IVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVD 206 (326)
Q Consensus 127 iivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~ 206 (326)
+..+|...+...+.+..+++.++|+|.+-+-.-- |.+..+..|=-++++++|+.++.|+.|-+-..
T Consensus 3 i~pSil~ad~~~l~~el~~l~~~g~d~lHiDvMD------------G~FVPN~tfG~~~i~~l~~~t~~~~DvHLMv~-- 68 (210)
T PRK08005 3 LHPSLASADPLRYAEALTALHDAPLGSLHLDIED------------TSFINNITFGMKTIQAVAQQTRHPLSFHLMVS-- 68 (210)
T ss_pred EEeehhhCCHHHHHHHHHHHHHCCCCEEEEeccC------------CCcCCccccCHHHHHHHHhcCCCCeEEEeccC--
Confidence 5577888899999999999999999987664321 11112222224567777777788877765442
Q ss_pred CCccHHHHHHHHHHHhhhCCccEEEEecCCcc-----------cC---------------------------------CC
Q 020423 207 DHDSYNQLCDFIYKVSSLSPTRHFIIHSRKAL-----------LN---------------------------------GI 242 (326)
Q Consensus 207 ~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~-----------~~---------------------------------g~ 242 (326)
+ .+.. +. .+.++|+|.|++|--... .+ |.
T Consensus 69 ~---P~~~---i~-~~~~~gad~It~H~Ea~~~~~~~l~~Ik~~G~k~GlAlnP~Tp~~~i~~~l~~vD~VlvMsV~PGf 141 (210)
T PRK08005 69 S---PQRW---LP-WLAAIRPGWIFIHAESVQNPSEILADIRAIGAKAGLALNPATPLLPYRYLALQLDALMIMTSEPDG 141 (210)
T ss_pred C---HHHH---HH-HHHHhCCCEEEEcccCccCHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHhcCEEEEEEecCCC
Confidence 2 2222 22 234588899888843110 00 11
Q ss_pred CcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhCCchhHHhHHH
Q 020423 243 SPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDT 312 (326)
Q Consensus 243 ~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~dP~l~~~~i~~ 312 (326)
.+ ...-+..++.++++++......+-.-||| +.+.+.++.+.|||.+.+|+++..+++ ..+.++.
T Consensus 142 ~G---Q~f~~~~~~KI~~l~~~~~~~~I~VDGGI-~~~~i~~l~~aGad~~V~GsaiF~~~d-~~~~~~~ 206 (210)
T PRK08005 142 RG---QQFIAAMCEKVSQSREHFPAAECWADGGI-TLRAARLLAAAGAQHLVIGRALFTTAN-YDVTLSQ 206 (210)
T ss_pred cc---ceecHHHHHHHHHHHHhcccCCEEEECCC-CHHHHHHHHHCCCCEEEEChHhhCCCC-HHHHHHH
Confidence 11 01111123455555544334468888999 689999999999999999999987776 3444443
|
|
| >KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00012 Score=69.73 Aligned_cols=64 Identities=23% Similarity=0.358 Sum_probs=47.7
Q ss_pred HHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhh
Q 020423 220 KVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVG 296 (326)
Q Consensus 220 ~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iG 296 (326)
.++.++|+|.|++.... |.+ + ...+.++-+++.+|+++||+ |.+-+.+.++.++..|||++=||
T Consensus 257 ~ll~~aGvdvviLDSSq----GnS------~--~qiemik~iK~~yP~l~Via-GNVVT~~qa~nLI~aGaDgLrVG 320 (503)
T KOG2550|consen 257 DLLVQAGVDVVILDSSQ----GNS------I--YQLEMIKYIKETYPDLQIIA-GNVVTKEQAANLIAAGADGLRVG 320 (503)
T ss_pred HHhhhcCCcEEEEecCC----Ccc------h--hHHHHHHHHHhhCCCceeec-cceeeHHHHHHHHHccCceeEec
Confidence 35668999999997532 211 1 12567777888899998876 66669999999999999996554
|
|
| >cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP) | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00061 Score=60.09 Aligned_cols=125 Identities=19% Similarity=0.226 Sum_probs=80.0
Q ss_pred HHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHHH
Q 020423 141 KATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYK 220 (326)
Q Consensus 141 ~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia~ 220 (326)
+..+.+.++|+|+|.+|... .+ +.++.+++..+.++...+..... ... +. .+
T Consensus 64 ~i~~ia~~~~~d~Vqlhg~e-----------------~~----~~~~~l~~~~~~~~i~~i~~~~~--~~~-~~----~~ 115 (203)
T cd00405 64 EILEIAEELGLDVVQLHGDE-----------------SP----EYCAQLRARLGLPVIKAIRVKDE--EDL-EK----AA 115 (203)
T ss_pred HHHHHHHhcCCCEEEECCCC-----------------CH----HHHHHHHhhcCCcEEEEEecCCh--hhH-HH----hh
Confidence 44455677899999998421 12 23445555556666644444311 111 11 11
Q ss_pred HhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhC-CChhhhhHHH
Q 020423 221 VSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKG-AHHVMVGRAA 299 (326)
Q Consensus 221 ~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~G-aD~V~iGRal 299 (326)
. ...|+|++.+.+.+....|-. -.+.+|+.+.++. .++|+++.||| +++.+.++++.+ +++|.+.+++
T Consensus 116 ~-~~~~aD~il~dt~~~~~~Gg~------g~~~~~~~l~~~~---~~~PvilaGGI-~~~Nv~~~i~~~~~~gvdv~S~i 184 (203)
T cd00405 116 A-YAGEVDAILLDSKSGGGGGGT------GKTFDWSLLRGLA---SRKPVILAGGL-TPDNVAEAIRLVRPYGVDVSSGV 184 (203)
T ss_pred h-ccccCCEEEEcCCCCCCCCCC------cceEChHHhhccc---cCCCEEEECCC-ChHHHHHHHHhcCCCEEEcCCcc
Confidence 1 247899998865443211101 1345688776554 47999999999 999999999988 9999999999
Q ss_pred HhCCc
Q 020423 300 YQNPW 304 (326)
Q Consensus 300 l~dP~ 304 (326)
...|-
T Consensus 185 e~~pg 189 (203)
T cd00405 185 ETSPG 189 (203)
T ss_pred cCCCC
Confidence 88766
|
Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes. |
| >COG0069 GltB Glutamate synthase domain 2 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.00012 Score=71.94 Aligned_cols=113 Identities=19% Similarity=0.135 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHhcC-CCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHH
Q 020423 179 PKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEY 257 (326)
Q Consensus 179 ~~~l~eiv~avr~~~-~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~ 257 (326)
++-+.+.+..+|+.. ..+|+||+-.+.. ++ + ++--..++++|.|+|+|-.... |.++......--..|+.
T Consensus 287 ieDLaqlI~dLk~~~~~~~I~VKlva~~~----v~-~---iaagvakA~AD~I~IdG~~GGT-GAsP~~~~~~~GiP~e~ 357 (485)
T COG0069 287 IEDLAQLIKDLKEANPWAKISVKLVAEHG----VG-T---IAAGVAKAGADVITIDGADGGT-GASPLTSIDHAGIPWEL 357 (485)
T ss_pred HHHHHHHHHHHHhcCCCCeEEEEEecccc----hH-H---HHhhhhhccCCEEEEcCCCCcC-CCCcHhHhhcCCchHHH
Confidence 778888889988875 4569999877422 11 1 1222347999999999765422 22221000000112442
Q ss_pred -HH---HHHhcC---CCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHH
Q 020423 258 -YY---ALLRDF---PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAY 300 (326)
Q Consensus 258 -i~---~i~~~~---~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall 300 (326)
+. +...+. -++-|++.||+.|+.|+..++..|||.|.+||+.|
T Consensus 358 glae~~q~L~~~glRd~v~l~~~Ggl~Tg~DVaka~aLGAd~v~~gTa~l 407 (485)
T COG0069 358 GLAETHQTLVLNGLRDKVKLIADGGLRTGADVAKAAALGADAVGFGTAAL 407 (485)
T ss_pred HHHHHHHHHHHcCCcceeEEEecCCccCHHHHHHHHHhCcchhhhchHHH
Confidence 22 222221 15789999999999999999999999999999976
|
|
| >PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=97.92 E-value=3.9e-05 Score=69.64 Aligned_cols=83 Identities=11% Similarity=0.110 Sum_probs=65.5
Q ss_pred HHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhH
Q 020423 218 IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGR 297 (326)
Q Consensus 218 ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGR 297 (326)
+++.+++.|+|.+|+-.-++...| .+.+++.++++.+.. +||...|||+|.++++++++.|||-|.+|+
T Consensus 35 ~A~~~~~~ga~~lhivDLd~a~~g---------~~~n~~~i~~i~~~~--~~v~vGGGIrs~e~~~~~l~~Ga~rvvigT 103 (241)
T PRK14114 35 LVEKLIEEGFTLIHVVDLSKAIEN---------SVENLPVLEKLSEFA--EHIQIGGGIRSLDYAEKLRKLGYRRQIVSS 103 (241)
T ss_pred HHHHHHHCCCCEEEEEECCCcccC---------CcchHHHHHHHHhhc--CcEEEecCCCCHHHHHHHHHCCCCEEEECc
Confidence 355667799999999765432112 123578888888764 699999999999999999999999999999
Q ss_pred HHHhCCchhHHhHHH
Q 020423 298 AAYQNPWYTLGHVDT 312 (326)
Q Consensus 298 all~dP~l~~~~i~~ 312 (326)
..+.||++ .+.+.+
T Consensus 104 ~a~~~p~~-l~~~~~ 117 (241)
T PRK14114 104 KVLEDPSF-LKFLKE 117 (241)
T ss_pred hhhCCHHH-HHHHHH
Confidence 99999994 555543
|
|
| >PRK07226 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00034 Score=64.52 Aligned_cols=135 Identities=16% Similarity=0.172 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhc---CCCcEEEEecc-C--CCCCcc
Q 020423 137 DNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAAN---TNVPVSVKCRI-G--VDDHDS 210 (326)
Q Consensus 137 ~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~---~~~pv~vK~r~-g--~~~~~~ 210 (326)
+.+...++.+.+.|+|.|++..- +|.. ..+...+.+.++++. .+.|+.+-... | .+...+
T Consensus 93 ~~~~~~ve~A~~~Gad~v~~~~~-----------~g~~---~~~~~~~~~~~v~~~~~~~g~pl~vi~~~~g~~~e~~~~ 158 (267)
T PRK07226 93 KVLVGTVEEAIKLGADAVSVHVN-----------VGSE---TEAEMLEDLGEVAEECEEWGMPLLAMMYPRGPGIKNEYD 158 (267)
T ss_pred ceeeecHHHHHHcCCCEEEEEEe-----------cCCh---hHHHHHHHHHHHHHHHHHcCCcEEEEEecCCCccCCCcc
Confidence 44556677889999999998641 1110 012234444444433 47887663211 1 111112
Q ss_pred HHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCC--CHHHHHHHH--
Q 020423 211 YNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGIN--TVDEVNAAL-- 286 (326)
Q Consensus 211 ~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~--s~~da~~~l-- 286 (326)
.+++. ...+...+.|+|+|-.+- . ...+.+.++.+.. .+||++.|||+ +.+++.+.+
T Consensus 159 ~~~i~-~a~~~a~e~GAD~vKt~~-----~------------~~~~~l~~~~~~~-~ipV~a~GGi~~~~~~~~l~~v~~ 219 (267)
T PRK07226 159 PEVVA-HAARVAAELGADIVKTNY-----T------------GDPESFREVVEGC-PVPVVIAGGPKTDTDREFLEMVRD 219 (267)
T ss_pred HHHHH-HHHHHHHHHCCCEEeeCC-----C------------CCHHHHHHHHHhC-CCCEEEEeCCCCCCHHHHHHHHHH
Confidence 22322 234555679999996541 0 1246666666553 79999999999 888877775
Q ss_pred --HhCCChhhhhHHHHhCCc
Q 020423 287 --RKGAHHVMVGRAAYQNPW 304 (326)
Q Consensus 287 --~~GaD~V~iGRall~dP~ 304 (326)
+.||+++.+||+++..|+
T Consensus 220 ~~~aGA~Gis~gr~i~~~~~ 239 (267)
T PRK07226 220 AMEAGAAGVAVGRNVFQHED 239 (267)
T ss_pred HHHcCCcEEehhhhhhcCCC
Confidence 799999999999998766
|
|
| >COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00029 Score=62.38 Aligned_cols=162 Identities=15% Similarity=0.182 Sum_probs=103.8
Q ss_pred CcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccC
Q 020423 125 HPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIG 204 (326)
Q Consensus 125 ~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g 204 (326)
.++..+|...+...+.+..+++.++|+|.+-+-.-- |.+..+..|=-++++++|+.+..|+.|-+-..
T Consensus 4 ~~iapSILsaD~~~l~~el~~~~~agad~iH~DVMD------------ghFVPNiTfGp~~v~~l~~~t~~p~DvHLMV~ 71 (220)
T COG0036 4 MKIAPSILSADFARLGEELKALEAAGADLIHIDVMD------------GHFVPNITFGPPVVKALRKITDLPLDVHLMVE 71 (220)
T ss_pred ceeeeehhhCCHhHHHHHHHHHHHcCCCEEEEeccC------------CCcCCCcccCHHHHHHHhhcCCCceEEEEecC
Confidence 457788888899999999999999999988775321 11112222224678888888888988876552
Q ss_pred CCCCccHHHHHHHHHHHhhhCCccEEEEecCCcc-----------c---------------------------------C
Q 020423 205 VDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKAL-----------L---------------------------------N 240 (326)
Q Consensus 205 ~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~-----------~---------------------------------~ 240 (326)
+ .+..+ . .+.++|+|+|++|.-... . .
T Consensus 72 --~---p~~~i---~-~fa~agad~It~H~E~~~~~~r~i~~Ik~~G~kaGv~lnP~Tp~~~i~~~l~~vD~VllMsVnP 142 (220)
T COG0036 72 --N---PDRYI---E-AFAKAGADIITFHAEATEHIHRTIQLIKELGVKAGLVLNPATPLEALEPVLDDVDLVLLMSVNP 142 (220)
T ss_pred --C---HHHHH---H-HHHHhCCCEEEEEeccCcCHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhhCCEEEEEeECC
Confidence 2 22222 2 334689999998843110 0 0
Q ss_pred CCCcCCcCCCCCccHHHHHHHHhcCC---CceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhCCchhHHhHHH
Q 020423 241 GISPAENRTIPPLKYEYYYALLRDFP---DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDT 312 (326)
Q Consensus 241 g~~~~~~~~~~~~~~~~i~~i~~~~~---~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~dP~l~~~~i~~ 312 (326)
|.++. ..-+...+.++++++... ++-|-.-||| +.+.+..+.+.|||.+..|+++..+++ +...++.
T Consensus 143 GfgGQ---~Fi~~~l~Ki~~lr~~~~~~~~~~IeVDGGI-~~~t~~~~~~AGad~~VaGSalF~~~d-~~~~i~~ 212 (220)
T COG0036 143 GFGGQ---KFIPEVLEKIRELRAMIDERLDILIEVDGGI-NLETIKQLAAAGADVFVAGSALFGADD-YKATIRE 212 (220)
T ss_pred CCccc---ccCHHHHHHHHHHHHHhcccCCeEEEEeCCc-CHHHHHHHHHcCCCEEEEEEEEeCCcc-HHHHHHH
Confidence 22211 111112344444443322 4456677998 789999999999999999999999888 4444443
|
|
| >TIGR00693 thiE thiamine-phosphate pyrophosphorylase | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.0011 Score=57.93 Aligned_cols=76 Identities=20% Similarity=0.147 Sum_probs=54.8
Q ss_pred hhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhC
Q 020423 223 SLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN 302 (326)
Q Consensus 223 e~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~d 302 (326)
.+.|+|++.++.-... +..+ ...++..++.+.++.+..+++||++.||| +++++.++++.|+|+|++++++...
T Consensus 113 ~~~g~dyi~~~~v~~t--~~k~---~~~~~~g~~~l~~~~~~~~~~pv~a~GGI-~~~~~~~~~~~G~~gva~~~~i~~~ 186 (196)
T TIGR00693 113 EAEGADYIGFGPIFPT--PTKK---DPAPPAGVELLREIAATSIDIPIVAIGGI-TLENAAEVLAAGADGVAVVSAIMQA 186 (196)
T ss_pred hHcCCCEEEECCccCC--CCCC---CCCCCCCHHHHHHHHHhcCCCCEEEECCc-CHHHHHHHHHcCCCEEEEhHHhhCC
Confidence 3589999987543211 1000 11123347777777765557999999999 6999999999999999999999976
Q ss_pred Cc
Q 020423 303 PW 304 (326)
Q Consensus 303 P~ 304 (326)
.+
T Consensus 187 ~d 188 (196)
T TIGR00693 187 AD 188 (196)
T ss_pred CC
Confidence 65
|
This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI. |
| >COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00097 Score=60.87 Aligned_cols=161 Identities=16% Similarity=0.192 Sum_probs=97.4
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEecCC--CCCCc---cc----CCCCccccccCCHHHHHHHHHHHHhc-CCCcEEEEec
Q 020423 133 GSNLDNLAKATELANAYNYDEINLNCG--CPSPK---VA----GHGCFGVSLMLDPKFVGEAMSVIAAN-TNVPVSVKCR 202 (326)
Q Consensus 133 g~~~~~f~~aA~~a~~aG~d~Iein~g--~P~~~---~~----r~d~yGgsl~~r~~~l~eiv~avr~~-~~~pv~vK~r 202 (326)
-.+.+...+..+.+.+.|+|.+||-+- -|... ++ |--.=| ...+...|+++.+|+. .+.|+.+=.=
T Consensus 27 dP~~e~s~e~i~~L~~~GaD~iELGvPfSDPvADGP~Iq~A~~rAL~~g----~t~~~~lel~~~~r~~~~~~Pivlm~Y 102 (265)
T COG0159 27 DPDLETSLEIIKTLVEAGADILELGVPFSDPVADGPTIQAAHLRALAAG----VTLEDTLELVEEIRAKGVKVPIVLMTY 102 (265)
T ss_pred CCCHHHHHHHHHHHHhCCCCEEEecCCCCCcCccCHHHHHHHHHHHHCC----CCHHHHHHHHHHHHhcCCCCCEEEEEe
Confidence 347899999999999999999999653 22210 01 100002 3567889999999965 6788766321
Q ss_pred c------CCCC---------------Cc-cHHHHHHHHHHHhhhCCccEEEEecCCcc-------------------cCC
Q 020423 203 I------GVDD---------------HD-SYNQLCDFIYKVSSLSPTRHFIIHSRKAL-------------------LNG 241 (326)
Q Consensus 203 ~------g~~~---------------~~-~~~e~~~~ia~~le~~Gvd~I~v~~~~~~-------------------~~g 241 (326)
. |.+. .+ .+++ .+.+.+..++.|+|.|-+-..+.. ..|
T Consensus 103 ~Npi~~~Gie~F~~~~~~~GvdGlivpDLP~ee-~~~~~~~~~~~gi~~I~lvaPtt~~~rl~~i~~~a~GFiY~vs~~G 181 (265)
T COG0159 103 YNPIFNYGIEKFLRRAKEAGVDGLLVPDLPPEE-SDELLKAAEKHGIDPIFLVAPTTPDERLKKIAEAASGFIYYVSRMG 181 (265)
T ss_pred ccHHHHhhHHHHHHHHHHcCCCEEEeCCCChHH-HHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCCcEEEEeccc
Confidence 1 1110 00 1112 122344455677777765432210 113
Q ss_pred CCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHh
Q 020423 242 ISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 301 (326)
Q Consensus 242 ~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~ 301 (326)
.++..... ...-.+.+.++++ +.++||...=||.+++++.++.+. ||+|.+|+++..
T Consensus 182 vTG~~~~~-~~~~~~~v~~vr~-~~~~Pv~vGFGIs~~e~~~~v~~~-ADGVIVGSAiV~ 238 (265)
T COG0159 182 VTGARNPV-SADVKELVKRVRK-YTDVPVLVGFGISSPEQAAQVAEA-ADGVIVGSAIVK 238 (265)
T ss_pred ccCCCccc-chhHHHHHHHHHH-hcCCCeEEecCcCCHHHHHHHHHh-CCeEEEcHHHHH
Confidence 33332211 1112345555554 459999999999999999999999 999999999864
|
|
| >PRK08745 ribulose-phosphate 3-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00097 Score=59.80 Aligned_cols=151 Identities=14% Similarity=0.240 Sum_probs=96.3
Q ss_pred EEEEecCCCHHHHHHHHHHHHHCCCCEEEecC--CCCCCcccCCCCccccccCCHHHHHHHHHHHHhc-CCCcEEEEecc
Q 020423 127 IVLQIGGSNLDNLAKATELANAYNYDEINLNC--GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAAN-TNVPVSVKCRI 203 (326)
Q Consensus 127 iivQL~g~~~~~f~~aA~~a~~aG~d~Iein~--g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~-~~~pv~vK~r~ 203 (326)
+..+|...+...+.+..++++++|+|.+-+-. |+-.++. .|| -++++++|+. ++.|+.+-+-.
T Consensus 6 i~pSil~ad~~~l~~~i~~l~~~g~d~lHiDimDG~FVPN~----tfg----------~~~i~~lr~~~~~~~~dvHLMv 71 (223)
T PRK08745 6 IAPSILSADFARLGEEVDNVLKAGADWVHFDVMDNHYVPNL----TIG----------PMVCQALRKHGITAPIDVHLMV 71 (223)
T ss_pred EEeehhhcCHHHHHHHHHHHHHcCCCEEEEecccCccCCCc----ccC----------HHHHHHHHhhCCCCCEEEEecc
Confidence 67788888999999999999999999876643 2222111 144 4577888887 58888776555
Q ss_pred CCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcc-----------cC--------------------------------
Q 020423 204 GVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKAL-----------LN-------------------------------- 240 (326)
Q Consensus 204 g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~-----------~~-------------------------------- 240 (326)
. + .+..++ .+.++|+|.|++|--... .+
T Consensus 72 ~--~---P~~~i~----~~~~~gad~I~~H~Ea~~~~~~~l~~Ir~~g~k~GlalnP~T~~~~i~~~l~~vD~VlvMtV~ 142 (223)
T PRK08745 72 E--P---VDRIVP----DFADAGATTISFHPEASRHVHRTIQLIKSHGCQAGLVLNPATPVDILDWVLPELDLVLVMSVN 142 (223)
T ss_pred C--C---HHHHHH----HHHHhCCCEEEEcccCcccHHHHHHHHHHCCCceeEEeCCCCCHHHHHHHHhhcCEEEEEEEC
Confidence 2 2 222222 234589999988843110 00
Q ss_pred -CCCcCCcCCCCCccHHHHHHHHh---c-CCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhCCc
Q 020423 241 -GISPAENRTIPPLKYEYYYALLR---D-FPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW 304 (326)
Q Consensus 241 -g~~~~~~~~~~~~~~~~i~~i~~---~-~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~dP~ 304 (326)
|..+. ..-+..++.+.++++ + ..++.|-.-||| +.+.+..+.+.|||.+.+|+++...++
T Consensus 143 PGf~GQ---~fi~~~l~KI~~l~~~~~~~~~~~~IeVDGGI-~~eti~~l~~aGaDi~V~GSaiF~~~d 207 (223)
T PRK08745 143 PGFGGQ---AFIPSALDKLRAIRKKIDALGKPIRLEIDGGV-KADNIGAIAAAGADTFVAGSAIFNAPD 207 (223)
T ss_pred CCCCCc---cccHHHHHHHHHHHHHHHhcCCCeeEEEECCC-CHHHHHHHHHcCCCEEEEChhhhCCCC
Confidence 11111 111112333433332 2 235678889999 589999999999999999999986655
|
|
| >TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase | Back alignment and domain information |
|---|
Probab=97.84 E-value=7.2e-05 Score=68.03 Aligned_cols=83 Identities=20% Similarity=0.225 Sum_probs=65.4
Q ss_pred HHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHH
Q 020423 219 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRA 298 (326)
Q Consensus 219 a~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRa 298 (326)
++.+++.|..++|+..-+... | .+.+.+.++++.+.. .+||...|||+|.++++++++.|||-|.+|+.
T Consensus 37 a~~~~~~g~~~lhivDLd~a~-g---------~~~n~~~i~~i~~~~-~~~v~vgGGIrs~e~~~~~l~~Ga~~vvigT~ 105 (243)
T TIGR01919 37 AKWWEQGGAEWIHLVDLDAAF-G---------GGNNEMMLEEVVKLL-VVVEELSGGRRDDSSLRAALTGGRARVNGGTA 105 (243)
T ss_pred HHHHHhCCCeEEEEEECCCCC-C---------CcchHHHHHHHHHHC-CCCEEEcCCCCCHHHHHHHHHcCCCEEEECch
Confidence 445577899999987544321 1 123577888888775 79999999999999999999999999999999
Q ss_pred HHhCCchhHHhHHH
Q 020423 299 AYQNPWYTLGHVDT 312 (326)
Q Consensus 299 ll~dP~l~~~~i~~ 312 (326)
++.||+++.+..+.
T Consensus 106 a~~~p~~~~~~~~~ 119 (243)
T TIGR01919 106 ALENPWWAAAVIRY 119 (243)
T ss_pred hhCCHHHHHHHHHH
Confidence 99999965544443
|
This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent. |
| >PRK04302 triosephosphate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00071 Score=60.66 Aligned_cols=141 Identities=13% Similarity=0.061 Sum_probs=83.6
Q ss_pred HHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHHHH
Q 020423 142 ATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKV 221 (326)
Q Consensus 142 aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia~~ 221 (326)
.++.++++|+|+|-+..+- |... .+.+.+.++..++ .|..+.+ -.+ +.+++ ..
T Consensus 77 ~~~~l~~~G~~~vii~~se------r~~~--------~~e~~~~v~~a~~-~Gl~~I~--~v~-----~~~~~----~~- 129 (223)
T PRK04302 77 LPEAVKDAGAVGTLINHSE------RRLT--------LADIEAVVERAKK-LGLESVV--CVN-----NPETS----AA- 129 (223)
T ss_pred HHHHHHHcCCCEEEEeccc------cccC--------HHHHHHHHHHHHH-CCCeEEE--EcC-----CHHHH----HH-
Confidence 3777888999999885321 1111 1225556666554 3654444 121 12222 12
Q ss_pred hhhCCccEEEEecCCcccCCCCcCCcCCCCCccHH-HHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHH
Q 020423 222 SSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYE-YYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAY 300 (326)
Q Consensus 222 le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~-~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall 300 (326)
+.+.|.|+|-+-.+... |... ......+...+ .+..+++...++||++.|||.+++++..+++.|+|+|.+|++++
T Consensus 130 ~~~~~~~~I~~~p~~~i--gt~~-~~~~~~~~~i~~~~~~ir~~~~~~pvi~GggI~~~e~~~~~~~~gadGvlVGsa~l 206 (223)
T PRK04302 130 AAALGPDYVAVEPPELI--GTGI-PVSKAKPEVVEDAVEAVKKVNPDVKVLCGAGISTGEDVKAALELGADGVLLASGVV 206 (223)
T ss_pred HhcCCCCEEEEeCcccc--ccCC-CCCcCCHHHHHHHHHHHHhccCCCEEEEECCCCCHHHHHHHHcCCCCEEEEehHHh
Confidence 34578888887654321 1100 00001121222 23333332347999999999999999999999999999999999
Q ss_pred hCCchhHHhHHHh
Q 020423 301 QNPWYTLGHVDTA 313 (326)
Q Consensus 301 ~dP~l~~~~i~~~ 313 (326)
..++ |.+.+++.
T Consensus 207 ~~~~-~~~~~~~~ 218 (223)
T PRK04302 207 KAKD-PEAALRDL 218 (223)
T ss_pred CCcC-HHHHHHHH
Confidence 8888 66666543
|
|
| >cd02812 PcrB_like PcrB_like proteins | Back alignment and domain information |
|---|
Probab=97.83 E-value=7.5e-05 Score=66.58 Aligned_cols=77 Identities=17% Similarity=0.187 Sum_probs=59.1
Q ss_pred HHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhH
Q 020423 218 IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGR 297 (326)
Q Consensus 218 ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGR 297 (326)
.+...+..|...+.+. .. |. ..+.+.++++++...++|++..|||+|+++++++++.|||.|.+|+
T Consensus 140 yA~aae~~g~~ivyLe-~S----G~---------~~~~e~I~~v~~~~~~~pl~vGGGIrs~e~a~~l~~aGAD~VVVGs 205 (219)
T cd02812 140 YALAAEYLGMPIVYLE-YS----GA---------YGPPEVVRAVKKVLGDTPLIVGGGIRSGEQAKEMAEAGADTIVVGN 205 (219)
T ss_pred HHHHHHHcCCeEEEeC-CC----CC---------cCCHHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHHHcCCCEEEECc
Confidence 4566677887777665 21 11 1236777777664338999999999999999999999999999999
Q ss_pred HHHhCCchhHH
Q 020423 298 AAYQNPWYTLG 308 (326)
Q Consensus 298 all~dP~l~~~ 308 (326)
++..||.++.+
T Consensus 206 ai~~~p~~~~~ 216 (219)
T cd02812 206 IVEEDPNAALE 216 (219)
T ss_pred hhhCCHHHHHH
Confidence 99999995443
|
One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown. |
| >PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase | Back alignment and domain information |
|---|
Probab=97.82 E-value=7.8e-05 Score=68.04 Aligned_cols=80 Identities=16% Similarity=0.098 Sum_probs=63.4
Q ss_pred HHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhH
Q 020423 218 IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGR 297 (326)
Q Consensus 218 ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGR 297 (326)
+++.+++.|++++||-.-.+ | .+.+.+.+.++++ . ++||-..|||++ ++++++++.|||-|.+|+
T Consensus 48 ~A~~~~~~Ga~~lHvVDLdg---g---------~~~n~~~i~~i~~-~-~~~vqvGGGIR~-e~i~~~l~~Ga~rViigT 112 (262)
T PLN02446 48 FAEMYKRDGLTGGHVIMLGA---D---------DASLAAALEALRA-Y-PGGLQVGGGVNS-ENAMSYLDAGASHVIVTS 112 (262)
T ss_pred HHHHHHHCCCCEEEEEECCC---C---------CcccHHHHHHHHh-C-CCCEEEeCCccH-HHHHHHHHcCCCEEEEch
Confidence 45567789999999975432 1 1234777888877 4 799999999997 999999999999999999
Q ss_pred HHHhC----CchhHHhHHH
Q 020423 298 AAYQN----PWYTLGHVDT 312 (326)
Q Consensus 298 all~d----P~l~~~~i~~ 312 (326)
+++.| |.++.+.++.
T Consensus 113 ~Av~~~~~~p~~v~~~~~~ 131 (262)
T PLN02446 113 YVFRDGQIDLERLKDLVRL 131 (262)
T ss_pred HHHhCCCCCHHHHHHHHHH
Confidence 99999 9865555444
|
|
| >cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS) | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.0013 Score=57.76 Aligned_cols=141 Identities=16% Similarity=0.124 Sum_probs=91.0
Q ss_pred CCcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEE-ec
Q 020423 124 QHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVK-CR 202 (326)
Q Consensus 124 ~~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK-~r 202 (326)
+.++++-+.-.++.. ..++.+.++|+|++-+|...+ ++.+.++++.+++ .+.++.+- +.
T Consensus 53 ~~~i~~~~~v~~~~~--~~~~~~~~aGad~i~~h~~~~-----------------~~~~~~~i~~~~~-~g~~~~v~~~~ 112 (202)
T cd04726 53 DKIIVADLKTADAGA--LEAEMAFKAGADIVTVLGAAP-----------------LSTIKKAVKAAKK-YGKEVQVDLIG 112 (202)
T ss_pred CCEEEEEEEeccccH--HHHHHHHhcCCCEEEEEeeCC-----------------HHHHHHHHHHHHH-cCCeEEEEEeC
Confidence 578888876555542 234667899999999985321 2335567777765 35555442 22
Q ss_pred cCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHH
Q 020423 203 IGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEV 282 (326)
Q Consensus 203 ~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da 282 (326)
. .+..+.. + ..+.|+|++.++.... .+..+ .+...+.++++.+. .++||++.|||+ ++++
T Consensus 113 ~-----~t~~e~~----~-~~~~~~d~v~~~~~~~--~~~~~------~~~~~~~i~~~~~~-~~~~i~~~GGI~-~~~i 172 (202)
T cd04726 113 V-----EDPEKRA----K-LLKLGVDIVILHRGID--AQAAG------GWWPEDDLKKVKKL-LGVKVAVAGGIT-PDTL 172 (202)
T ss_pred C-----CCHHHHH----H-HHHCCCCEEEEcCccc--ccccC------CCCCHHHHHHHHhh-cCCCEEEECCcC-HHHH
Confidence 2 2233332 2 2347999998853211 01100 11235666666654 489999999995 9999
Q ss_pred HHHHHhCCChhhhhHHHHhCCc
Q 020423 283 NAALRKGAHHVMVGRAAYQNPW 304 (326)
Q Consensus 283 ~~~l~~GaD~V~iGRall~dP~ 304 (326)
.++++.|||+|.+|+++...++
T Consensus 173 ~~~~~~Gad~vvvGsai~~~~d 194 (202)
T cd04726 173 PEFKKAGADIVIVGRAITGAAD 194 (202)
T ss_pred HHHHhcCCCEEEEeehhcCCCC
Confidence 9999999999999999987666
|
KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates. |
| >PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.0014 Score=58.37 Aligned_cols=151 Identities=14% Similarity=0.159 Sum_probs=88.6
Q ss_pred CCcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcc----cCC-------CCccccccCCHHHHHHHHHHHHhc
Q 020423 124 QHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKV----AGH-------GCFGVSLMLDPKFVGEAMSVIAAN 192 (326)
Q Consensus 124 ~~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~----~r~-------d~yGgsl~~r~~~l~eiv~avr~~ 192 (326)
..+++.=+.+.+.++....++.+.+.|+..+|+.+..|.... .++ -..|..-.-+++.+.+.+++
T Consensus 12 ~~~vi~vir~~~~~~a~~~~~al~~~Gi~~iEit~~~~~a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a~~a---- 87 (213)
T PRK06552 12 ANGVVAVVRGESKEEALKISLAVIKGGIKAIEVTYTNPFASEVIKELVELYKDDPEVLIGAGTVLDAVTARLAILA---- 87 (213)
T ss_pred HCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCccHHHHHHHHHHHcCCCCCeEEeeeeCCCHHHHHHHHHc----
Confidence 355666677889999999999999999999999876553100 000 00111111122222222111
Q ss_pred CCCcEEEEeccCCCCC----------------ccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHH
Q 020423 193 TNVPVSVKCRIGVDDH----------------DSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYE 256 (326)
Q Consensus 193 ~~~pv~vK~r~g~~~~----------------~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~ 256 (326)
|-.+.| +++++.. .+..|+ .+. .+.|+|++-+.... ....+
T Consensus 88 -GA~Fiv--sP~~~~~v~~~~~~~~i~~iPG~~T~~E~----~~A-~~~Gad~vklFPa~---------------~~G~~ 144 (213)
T PRK06552 88 -GAQFIV--SPSFNRETAKICNLYQIPYLPGCMTVTEI----VTA-LEAGSEIVKLFPGS---------------TLGPS 144 (213)
T ss_pred -CCCEEE--CCCCCHHHHHHHHHcCCCEECCcCCHHHH----HHH-HHcCCCEEEECCcc---------------cCCHH
Confidence 122222 2221110 112221 112 23566666552211 11256
Q ss_pred HHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhC
Q 020423 257 YYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN 302 (326)
Q Consensus 257 ~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~d 302 (326)
+++.+...++++|+++.||| +.+.+.++++.|+++|.+|+.++..
T Consensus 145 ~ik~l~~~~p~ip~~atGGI-~~~N~~~~l~aGa~~vavgs~l~~~ 189 (213)
T PRK06552 145 FIKAIKGPLPQVNVMVTGGV-NLDNVKDWFAAGADAVGIGGELNKL 189 (213)
T ss_pred HHHHHhhhCCCCEEEEECCC-CHHHHHHHHHCCCcEEEEchHHhCc
Confidence 67777777778999999999 5899999999999999999999743
|
|
| >PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=97.79 E-value=9.8e-05 Score=66.69 Aligned_cols=84 Identities=12% Similarity=0.009 Sum_probs=64.4
Q ss_pred HHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhH
Q 020423 218 IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGR 297 (326)
Q Consensus 218 ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGR 297 (326)
+++.+.+.|+|.+|+-.-++.. + .+.+.+.+.++.+.. ..||...|||+|.++++++++.|||-|.+|+
T Consensus 35 ~a~~~~~~ga~~lhivDLd~a~-~---------~~~n~~~i~~i~~~~-~~~v~vGGGIrs~e~~~~~l~~Ga~kvvigt 103 (232)
T PRK13586 35 IASKLYNEGYTRIHVVDLDAAE-G---------VGNNEMYIKEISKIG-FDWIQVGGGIRDIEKAKRLLSLDVNALVFST 103 (232)
T ss_pred HHHHHHHCCCCEEEEEECCCcC-C---------CcchHHHHHHHHhhC-CCCEEEeCCcCCHHHHHHHHHCCCCEEEECc
Confidence 3556677999999997654321 1 122467788887743 2499999999999999999999999999999
Q ss_pred HHHhCCchhHHhHHH
Q 020423 298 AAYQNPWYTLGHVDT 312 (326)
Q Consensus 298 all~dP~l~~~~i~~ 312 (326)
..+.||+++.+.++.
T Consensus 104 ~a~~~p~~~~~~~~~ 118 (232)
T PRK13586 104 IVFTNFNLFHDIVRE 118 (232)
T ss_pred hhhCCHHHHHHHHHH
Confidence 999999965444444
|
|
| >COG0434 SgcQ Predicted TIM-barrel enzyme [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00097 Score=59.40 Aligned_cols=188 Identities=13% Similarity=0.129 Sum_probs=119.4
Q ss_pred HcCCCcEEEecceeecccccccc--chhhhh----h-cCCCCCcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCC
Q 020423 90 LISKHAWLYTEMLAAETIIYQQG--NLDRFL----A-FSPEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPS 162 (326)
Q Consensus 90 ~~Gg~gli~te~~~~~~~~~~~~--~~~~~~----~-~~~~~~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~ 162 (326)
+.||++-++.|-..+.+...... ....+. + ..+-..|+.+|+.-+++ ..+...|...|+|.|-+|.-+-.
T Consensus 44 eegG~DavivEN~gD~Pf~k~v~~~tvaaMa~iv~~v~r~v~iPvGvNVLrNd~---vaA~~IA~a~gA~FIRVN~~tg~ 120 (263)
T COG0434 44 EEGGVDAVIVENYGDAPFLKDVGPETVAAMAVIVREVVREVSIPVGVNVLRNDA---VAALAIAYAVGADFIRVNVLTGA 120 (263)
T ss_pred HhCCCcEEEEeccCCCCCCCCCChHHHHHHHHHHHHHHHhccccceeeeecccc---HHHHHHHHhcCCCEEEEEeeece
Confidence 56899999999877666543221 111111 1 23456799999876653 35556677789999999875443
Q ss_pred CcccCCCCccccccCCHHHHHHHHHHHHhcCCC--cEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccC
Q 020423 163 PKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNV--PVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLN 240 (326)
Q Consensus 163 ~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~--pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~ 240 (326)
. -+|+ |-++.+...+.+....+...+.+ .+-||-.....+. ++++. +...++..++|.++++|...
T Consensus 121 ~---~tdq--Giieg~A~e~~r~r~~L~~~v~vlADv~VKHa~~l~~~-~~~~~---v~dtver~~aDaVI~tG~~T--- 188 (263)
T COG0434 121 Y---ATDQ--GIIEGNAAELARYRARLGSRVKVLADVHVKHAVHLGNR-SLEEA---VKDTVERGLADAVIVTGSRT--- 188 (263)
T ss_pred E---eccc--ceecchHHHHHHHHHhccCCcEEEeecchhcccccCCc-CHHHH---HHHHHHccCCCEEEEecccC---
Confidence 1 2343 34556666666665555432221 1333333222221 34433 34456778899999998753
Q ss_pred CCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhCCc
Q 020423 241 GISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW 304 (326)
Q Consensus 241 g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~dP~ 304 (326)
| .+.+.+.++.+++. .++||++.-|+ +++.+.+.++. ||++.+|+.+=.+.-
T Consensus 189 G---------~~~d~~el~~a~~~-~~~pvlvGSGv-~~eN~~~~l~~-adG~IvgT~lK~~G~ 240 (263)
T COG0434 189 G---------SPPDLEELKLAKEA-VDTPVLVGSGV-NPENIEELLKI-ADGVIVGTSLKKGGV 240 (263)
T ss_pred C---------CCCCHHHHHHHHhc-cCCCEEEecCC-CHHHHHHHHHH-cCceEEEEEEccCCE
Confidence 2 12346777666554 47999999998 89999999988 999999999877764
|
|
| >PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00016 Score=65.30 Aligned_cols=140 Identities=16% Similarity=0.185 Sum_probs=86.5
Q ss_pred HHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC---CCcEEEEeccCCCC--CccHHHH
Q 020423 140 AKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT---NVPVSVKCRIGVDD--HDSYNQL 214 (326)
Q Consensus 140 ~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~---~~pv~vK~r~g~~~--~~~~~e~ 214 (326)
...++.+.+.|+|+|++-+. ||.....+.+...+.+.++++.+ +.|+.+-.-+...+ ...-.+.
T Consensus 79 ~~~ve~A~~~GAd~vd~vi~-----------~~~~~~~~~~~~~~~i~~v~~~~~~~gl~vIlE~~l~~~~~~~~~~~~~ 147 (236)
T PF01791_consen 79 VAEVEEAIRLGADEVDVVIN-----------YGALGSGNEDEVIEEIAAVVEECHKYGLKVILEPYLRGEEVADEKKPDL 147 (236)
T ss_dssp HHHHHHHHHTT-SEEEEEEE-----------HHHHHTTHHHHHHHHHHHHHHHHHTSEEEEEEEECECHHHBSSTTHHHH
T ss_pred HHHHHHHHHcCCceeeeecc-----------ccccccccHHHHHHHHHHHHHHHhcCCcEEEEEEecCchhhcccccHHH
Confidence 67788899999999999651 21111123444455555555443 67777652221000 0011233
Q ss_pred HHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCce----EEEeCCC------CCHHHHHH
Q 020423 215 CDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLT----FTLNGGI------NTVDEVNA 284 (326)
Q Consensus 215 ~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iP----VIa~GgI------~s~~da~~ 284 (326)
+....++..+.|+|+|-.+.+.. .+. .....+.+.++.+.. .+| |.++||+ .+.+++.+
T Consensus 148 I~~a~ria~e~GaD~vKt~tg~~--~~~--------t~~~~~~~~~~~~~~-~~p~~~~Vk~sGGi~~~~~~~~l~~a~~ 216 (236)
T PF01791_consen 148 IARAARIAAELGADFVKTSTGKP--VGA--------TPEDVELMRKAVEAA-PVPGKVGVKASGGIDAEDFLRTLEDALE 216 (236)
T ss_dssp HHHHHHHHHHTT-SEEEEE-SSS--SCS--------HHHHHHHHHHHHHTH-SSTTTSEEEEESSSSHHHHHHSHHHHHH
T ss_pred HHHHHHHHHHhCCCEEEecCCcc--ccc--------cHHHHHHHHHHHHhc-CCCcceEEEEeCCCChHHHHHHHHHHHH
Confidence 44456677789999999875521 111 112345566666654 677 9999999 99999999
Q ss_pred HHHhCC--ChhhhhHHHHh
Q 020423 285 ALRKGA--HHVMVGRAAYQ 301 (326)
Q Consensus 285 ~l~~Ga--D~V~iGRall~ 301 (326)
+++.|| -++..||.+..
T Consensus 217 ~i~aGa~~~G~~~Gr~i~q 235 (236)
T PF01791_consen 217 FIEAGADRIGTSSGRNIWQ 235 (236)
T ss_dssp HHHTTHSEEEEEEHHHHHT
T ss_pred HHHcCChhHHHHHHHHHHc
Confidence 999999 99999998764
|
|
| >PLN02460 indole-3-glycerol-phosphate synthase | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.0012 Score=62.39 Aligned_cols=157 Identities=15% Similarity=0.149 Sum_probs=93.2
Q ss_pred HHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhc-CCCcEEEEecc------------C
Q 020423 138 NLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAAN-TNVPVSVKCRI------------G 204 (326)
Q Consensus 138 ~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~-~~~pv~vK~r~------------g 204 (326)
+..+.|+..++.|+++|-+.. ....|+|+++ -++.+|+. ++.|+..|==+ |
T Consensus 140 dp~~iA~~Ye~~GA~aISVLT--------d~~~F~Gs~e--------~L~~vr~~~v~lPvLrKDFIID~yQI~eAr~~G 203 (338)
T PLN02460 140 DPVEIAQAYEKGGAACLSVLT--------DEKYFQGSFE--------NLEAIRNAGVKCPLLCKEFIVDAWQIYYARSKG 203 (338)
T ss_pred CHHHHHHHHHhCCCcEEEEec--------CcCcCCCCHH--------HHHHHHHcCCCCCEeeccccCCHHHHHHHHHcC
Confidence 356777778889999999852 2345787753 46778887 89999887110 1
Q ss_pred CCCC------ccHHHHHHHHHHHhhhCCccEE-EEecCCc----ccC-CC--CcCCcCCCCC--ccHHHHHHHHh-----
Q 020423 205 VDDH------DSYNQLCDFIYKVSSLSPTRHF-IIHSRKA----LLN-GI--SPAENRTIPP--LKYEYYYALLR----- 263 (326)
Q Consensus 205 ~~~~------~~~~e~~~~ia~~le~~Gvd~I-~v~~~~~----~~~-g~--~~~~~~~~~~--~~~~~i~~i~~----- 263 (326)
.+-. -+-.++.+ +.+...+.|.+.+ .||...- ..- |. -+-.++...+ .+.+...++..
T Consensus 204 ADAVLLIaaiL~~~~L~~-l~~~A~~LGme~LVEVH~~~ElerAl~~~ga~iIGINNRdL~Tf~vDl~~t~~L~~~~~~~ 282 (338)
T PLN02460 204 ADAILLIAAVLPDLDIKY-MLKICKSLGMAALIEVHDEREMDRVLGIEGVELIGINNRSLETFEVDISNTKKLLEGERGE 282 (338)
T ss_pred CCcHHHHHHhCCHHHHHH-HHHHHHHcCCeEEEEeCCHHHHHHHHhcCCCCEEEEeCCCCCcceECHHHHHHHhhhcccc
Confidence 1110 01112222 2334455777665 4664321 000 11 1112222222 22333344443
Q ss_pred cC--CCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhCCchhHHhHHH
Q 020423 264 DF--PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDT 312 (326)
Q Consensus 264 ~~--~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~dP~l~~~~i~~ 312 (326)
.. .++.+|+-+||.+++|+..+.+.|+|+|.||.+++..|+ ....+.+
T Consensus 283 ~i~~~~~~~VsESGI~t~~Dv~~l~~~GadAvLVGEsLMr~~d-p~~~l~~ 332 (338)
T PLN02460 283 QIREKGIIVVGESGLFTPDDVAYVQNAGVKAVLVGESLVKQDD-PGKGIAG 332 (338)
T ss_pred ccCCCCeEEEECCCCCCHHHHHHHHHCCCCEEEECHHHhCCCC-HHHHHHH
Confidence 22 256689999999999999999999999999999999999 3444433
|
|
| >COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.0014 Score=58.22 Aligned_cols=156 Identities=18% Similarity=0.254 Sum_probs=91.0
Q ss_pred HHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEecc------CCC----
Q 020423 137 DNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRI------GVD---- 206 (326)
Q Consensus 137 ~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~------g~~---- 206 (326)
+.-.+.++.+.++|-|+|.|- |+.--.-+.+.++++++|+..++|+.+--+. ..+
T Consensus 28 ~~~~ei~~~~~~~GTDaImIG---------------GS~gvt~~~~~~~v~~ik~~~~lPvilfP~~~~~is~~aDavff 92 (240)
T COG1646 28 EEADEIAEAAAEAGTDAIMIG---------------GSDGVTEENVDNVVEAIKERTDLPVILFPGSPSGISPYADAVFF 92 (240)
T ss_pred cccHHHHHHHHHcCCCEEEEC---------------CcccccHHHHHHHHHHHHhhcCCCEEEecCChhccCccCCeEEE
Confidence 456778888999999999993 3332456778999999998888998775321 110
Q ss_pred -------C-----CccHHHHHHHHHHH-hhhCCccEEEEecCCc--ccC-----------------------CCC----c
Q 020423 207 -------D-----HDSYNQLCDFIYKV-SSLSPTRHFIIHSRKA--LLN-----------------------GIS----P 244 (326)
Q Consensus 207 -------~-----~~~~~e~~~~ia~~-le~~Gvd~I~v~~~~~--~~~-----------------------g~~----~ 244 (326)
+ ..+.+. ...+.+. +|.-.-.|+++..+.. +.+ |+. .
T Consensus 93 ~svLNS~n~~~i~gaq~~~-a~~~~~~~~e~i~~gYiV~~p~~~va~v~~A~~ip~~~~~iaa~y~la~~~~g~~~~YlE 171 (240)
T COG1646 93 PSVLNSDNPYWIVGAQVEG-AKLVGKLGLEVIPEGYIVVNPDGTVAWVGKAKPIPLDKEDIAAYYALAEKYLGMPVVYLE 171 (240)
T ss_pred EEEecCCCcccccchhhhh-hHHHHhhhheecceEEEEECCCCceeeecccccCCCCcHHHHHHHHHHHHHhCCeEEEEE
Confidence 0 001111 1111111 1112233444432110 000 000 0
Q ss_pred CCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhCCchhHHhHH
Q 020423 245 AENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVD 311 (326)
Q Consensus 245 ~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~dP~l~~~~i~ 311 (326)
...-.-.|...+.+++.++ ..|+|..|||+|+|++.++.+.|||.|.+|..+..||+-+.+.+.
T Consensus 172 agsga~~Pv~~e~v~~v~~---~~~LivGGGIrs~E~A~~~a~agAD~IVtG~iiee~~~~~~~~v~ 235 (240)
T COG1646 172 AGSGAGDPVPVEMVSRVLS---DTPLIVGGGIRSPEQAREMAEAGADTIVTGTIIEEDPDKALETVE 235 (240)
T ss_pred ecCCCCCCcCHHHHHHhhc---cceEEEcCCcCCHHHHHHHHHcCCCEEEECceeecCHHHHHHHHH
Confidence 0000111222344444332 349999999999999999999999999999999999986554443
|
|
| >COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.72 E-value=9e-05 Score=66.44 Aligned_cols=84 Identities=24% Similarity=0.314 Sum_probs=67.7
Q ss_pred HHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHH
Q 020423 219 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRA 298 (326)
Q Consensus 219 a~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRa 298 (326)
++.+++.|+.++|+-.-+....| .+-+.+.++++.+.. ++||-..|||+|.++++++++.|++-|.+|+.
T Consensus 37 a~~~~~~Ga~~lHlVDLdgA~~g---------~~~n~~~i~~i~~~~-~~~vQvGGGIRs~~~v~~ll~~G~~rViiGt~ 106 (241)
T COG0106 37 AKKWSDQGAEWLHLVDLDGAKAG---------GPRNLEAIKEILEAT-DVPVQVGGGIRSLEDVEALLDAGVARVIIGTA 106 (241)
T ss_pred HHHHHHcCCcEEEEeeccccccC---------CcccHHHHHHHHHhC-CCCEEeeCCcCCHHHHHHHHHCCCCEEEEecc
Confidence 45567799999998654432211 123467888888775 99999999999999999999999999999999
Q ss_pred HHhCCchhHHhHHH
Q 020423 299 AYQNPWYTLGHVDT 312 (326)
Q Consensus 299 ll~dP~l~~~~i~~ 312 (326)
.+.||.++.+.++.
T Consensus 107 av~~p~~v~~~~~~ 120 (241)
T COG0106 107 AVKNPDLVKELCEE 120 (241)
T ss_pred eecCHHHHHHHHHH
Confidence 99999976666665
|
|
| >PRK06806 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.0013 Score=61.00 Aligned_cols=154 Identities=12% Similarity=0.199 Sum_probs=96.7
Q ss_pred CCCcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEe-
Q 020423 123 EQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKC- 201 (326)
Q Consensus 123 ~~~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~- 201 (326)
...|+.++|-|..- + +.++.+.++||+.|.+-...- +...+.+...++++..++ .|.++-..+
T Consensus 73 ~~vpv~lHlDH~~~--~-e~i~~Al~~G~tsVm~d~s~~------------~~~eni~~t~~v~~~a~~-~gv~veaE~g 136 (281)
T PRK06806 73 AKVPVAVHFDHGMT--F-EKIKEALEIGFTSVMFDGSHL------------PLEENIQKTKEIVELAKQ-YGATVEAEIG 136 (281)
T ss_pred CCCCEEEECCCCCC--H-HHHHHHHHcCCCEEEEcCCCC------------CHHHHHHHHHHHHHHHHH-cCCeEEEEee
Confidence 35578888765431 2 345556677888888853210 112445555555555433 366665442
Q ss_pred ccCCCCC---------ccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEE
Q 020423 202 RIGVDDH---------DSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTL 272 (326)
Q Consensus 202 r~g~~~~---------~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa 272 (326)
.+|..+. .+.++. .+..++.|+|++-++-++..... +..++..++.++++.+.. ++|+++
T Consensus 137 hlG~~d~~~~~~g~s~t~~eea----~~f~~~tg~DyLAvaiG~~hg~~------~~~~~l~~~~L~~i~~~~-~iPlV~ 205 (281)
T PRK06806 137 RVGGSEDGSEDIEMLLTSTTEA----KRFAEETDVDALAVAIGNAHGMY------NGDPNLRFDRLQEINDVV-HIPLVL 205 (281)
T ss_pred eECCccCCcccccceeCCHHHH----HHHHHhhCCCEEEEccCCCCCCC------CCCCccCHHHHHHHHHhc-CCCEEE
Confidence 2331111 133333 33334579999999655432111 122456789999988774 899999
Q ss_pred eC--CCCCHHHHHHHHHhCCChhhhhHHHHhCCc
Q 020423 273 NG--GINTVDEVNAALRKGAHHVMVGRAAYQNPW 304 (326)
Q Consensus 273 ~G--gI~s~~da~~~l~~GaD~V~iGRall~dP~ 304 (326)
-| || +.+++.++++.|++.|.+.+++..+|.
T Consensus 206 hG~SGI-~~e~~~~~i~~G~~kinv~T~i~~a~~ 238 (281)
T PRK06806 206 HGGSGI-SPEDFKKCIQHGIRKINVATATFNSVI 238 (281)
T ss_pred ECCCCC-CHHHHHHHHHcCCcEEEEhHHHHHHHH
Confidence 99 88 778899999999999999999998543
|
|
| >TIGR01182 eda Entner-Doudoroff aldolase | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.0023 Score=56.55 Aligned_cols=149 Identities=15% Similarity=0.183 Sum_probs=87.6
Q ss_pred CCcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEecc
Q 020423 124 QHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRI 203 (326)
Q Consensus 124 ~~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~ 203 (326)
..+++.=+.+.++++..+.++.+.+.|++.+|+.+..|. ..+.++.+++..+ .+.+ -.
T Consensus 7 ~~~liaVlr~~~~e~a~~~~~al~~~Gi~~iEit~~t~~-------------------a~~~i~~l~~~~~-~~~v--GA 64 (204)
T TIGR01182 7 EAKIVPVIRIDDVDDALPLAKALIEGGLRVLEVTLRTPV-------------------ALDAIRLLRKEVP-DALI--GA 64 (204)
T ss_pred hCCEEEEEecCCHHHHHHHHHHHHHcCCCEEEEeCCCcc-------------------HHHHHHHHHHHCC-CCEE--EE
Confidence 345666677889999999999999999999999875443 1234444444331 1111 11
Q ss_pred CCCCCccHHHHHHHHHHHhhhCCccEEEEecCCc-------------ccCC-CCc----------CCcCCCCCcc----H
Q 020423 204 GVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKA-------------LLNG-ISP----------AENRTIPPLK----Y 255 (326)
Q Consensus 204 g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~-------------~~~g-~~~----------~~~~~~~~~~----~ 255 (326)
| ...+.++. +...++|+++|. +.... +..| +++ .+.-.+.|.. .
T Consensus 65 G--TVl~~~~a-----~~a~~aGA~Fiv-sP~~~~~v~~~~~~~~i~~iPG~~TptEi~~A~~~Ga~~vKlFPA~~~GG~ 136 (204)
T TIGR01182 65 G--TVLNPEQL-----RQAVDAGAQFIV-SPGLTPELAKHAQDHGIPIIPGVATPSEIMLALELGITALKLFPAEVSGGV 136 (204)
T ss_pred E--eCCCHHHH-----HHHHHcCCCEEE-CCCCCHHHHHHHHHcCCcEECCCCCHHHHHHHHHCCCCEEEECCchhcCCH
Confidence 1 11112211 111235555552 21100 0000 000 0000111111 4
Q ss_pred HHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhCC
Q 020423 256 EYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNP 303 (326)
Q Consensus 256 ~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~dP 303 (326)
.+++.++.-++++|++.+||| +++.+.+.++.|+.+|.+|+.+....
T Consensus 137 ~yikal~~plp~i~~~ptGGV-~~~N~~~~l~aGa~~vg~Gs~L~~~~ 183 (204)
T TIGR01182 137 KMLKALAGPFPQVRFCPTGGI-NLANVRDYLAAPNVACGGGSWLVPKD 183 (204)
T ss_pred HHHHHHhccCCCCcEEecCCC-CHHHHHHHHhCCCEEEEEChhhcCch
Confidence 567777766789999999999 66999999999999999999998544
|
2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida |
| >PRK08227 autoinducer 2 aldolase; Validated | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.0009 Score=61.37 Aligned_cols=159 Identities=16% Similarity=0.192 Sum_probs=97.1
Q ss_pred CCcEEEEecCCC-------HHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHH---HHHHHHhcC
Q 020423 124 QHPIVLQIGGSN-------LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGE---AMSVIAANT 193 (326)
Q Consensus 124 ~~piivQL~g~~-------~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~e---iv~avr~~~ 193 (326)
+.|++++|.+.. .+......+.|.+.|+|+|-+|. + .|+..+ .+.+.+ +.++. +..
T Consensus 74 ~~~lil~ls~~t~~~~~~~~~~l~~sVeeAvrlGAdAV~~~v-----~------~Gs~~E--~~~l~~l~~v~~ea-~~~ 139 (264)
T PRK08227 74 NKPVVLRASGGNSILKELSNEAVAVDMEDAVRLNACAVAAQV-----F------IGSEYE--HQSIKNIIQLVDAG-LRY 139 (264)
T ss_pred CCcEEEEEcCCCCCCCCCCcccceecHHHHHHCCCCEEEEEE-----e------cCCHHH--HHHHHHHHHHHHHH-HHh
Confidence 467888887531 23333445668889999998875 1 232211 233333 33332 345
Q ss_pred CCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEe
Q 020423 194 NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLN 273 (326)
Q Consensus 194 ~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~ 273 (326)
|+|+.+-...|..... -.+++...+++..+.|+|.|-+.- +. +.+.++++.. .+||+..
T Consensus 140 G~Plla~~prG~~~~~-~~~~ia~aaRiaaELGADiVK~~y-----------------~~--~~f~~vv~a~-~vPVvia 198 (264)
T PRK08227 140 GMPVMAVTAVGKDMVR-DARYFSLATRIAAEMGAQIIKTYY-----------------VE--EGFERITAGC-PVPIVIA 198 (264)
T ss_pred CCcEEEEecCCCCcCc-hHHHHHHHHHHHHHHcCCEEecCC-----------------CH--HHHHHHHHcC-CCcEEEe
Confidence 9998883333322222 223666677888889999996420 11 3456666654 7999999
Q ss_pred CCCCC-HHH----HHHHHHhCCChhhhhHHHHhC--CchhHHhHHHhhhCC
Q 020423 274 GGINT-VDE----VNAALRKGAHHVMVGRAAYQN--PWYTLGHVDTAIYGA 317 (326)
Q Consensus 274 GgI~s-~~d----a~~~l~~GaD~V~iGRall~d--P~l~~~~i~~~~~~~ 317 (326)
||=.. .++ +.++++.||.+|.+||=..+. |.-+.+.+...+|+.
T Consensus 199 GG~k~~~~~~L~~v~~ai~aGa~Gv~~GRNIfQ~~~p~~~~~al~~IVh~~ 249 (264)
T PRK08227 199 GGKKLPERDALEMCYQAIDEGASGVDMGRNIFQSEHPVAMIKAVHAVVHEN 249 (264)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCceeeechhhhccCCHHHHHHHHHHHHhCC
Confidence 99763 233 344556899999999999876 444556666555544
|
|
| >COG0274 DeoC Deoxyribose-phosphate aldolase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00069 Score=60.08 Aligned_cols=139 Identities=12% Similarity=0.072 Sum_probs=90.6
Q ss_pred HHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHH
Q 020423 136 LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLC 215 (326)
Q Consensus 136 ~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~ 215 (326)
.+.=..-++.+.+.|+|.||+=. + +|.-...+.+.+.+-+++|+++++-++.+|+-+..-. .+-++..
T Consensus 76 t~~K~~Ea~~ai~~GAdEiDmVi-----n------ig~~k~g~~~~V~~eI~~v~~a~~~~~~lKVIlEt~~-Lt~ee~~ 143 (228)
T COG0274 76 TAVKAAEAREAIENGADEIDMVI-----N------IGALKSGNWEAVEREIRAVVEACADAVVLKVILETGL-LTDEEKR 143 (228)
T ss_pred HHHHHHHHHHHHHcCCCeeeeee-----e------HHHHhcCCHHHHHHHHHHHHHHhCCCceEEEEEeccc-cCHHHHH
Confidence 34445566788889999999843 1 2333335788999999999999865566776552111 1122332
Q ss_pred HHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhh
Q 020423 216 DFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMV 295 (326)
Q Consensus 216 ~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~i 295 (326)
...++..++|+|+|--+.+.. ..|- ...+..++.+... .++.|=++|||+|.+|+..+++.|+.-+..
T Consensus 144 -~A~~i~~~aGAdFVKTSTGf~-~~gA--------T~edv~lM~~~vg--~~vgvKaSGGIrt~eda~~~i~aga~RiGt 211 (228)
T COG0274 144 -KACEIAIEAGADFVKTSTGFS-AGGA--------TVEDVKLMKETVG--GRVGVKASGGIRTAEDAKAMIEAGATRIGT 211 (228)
T ss_pred -HHHHHHHHhCCCEEEcCCCCC-CCCC--------CHHHHHHHHHHhc--cCceeeccCCcCCHHHHHHHHHHhHHHhcc
Confidence 244566689999998776543 1111 1122334444432 268899999999999999999998777666
Q ss_pred hHH
Q 020423 296 GRA 298 (326)
Q Consensus 296 GRa 298 (326)
.++
T Consensus 212 Ss~ 214 (228)
T COG0274 212 SSG 214 (228)
T ss_pred ccH
Confidence 554
|
|
| >PRK13957 indole-3-glycerol-phosphate synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.0027 Score=57.61 Aligned_cols=148 Identities=14% Similarity=0.168 Sum_probs=84.0
Q ss_pred HHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEecc------------CCC
Q 020423 139 LAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRI------------GVD 206 (326)
Q Consensus 139 f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~------------g~~ 206 (326)
..+.|+..+++|+++|-+.. ....|||++ +.++.+++.++.|+..|==+ |.+
T Consensus 63 ~~~~A~~y~~~GA~aISVlT--------e~~~F~Gs~--------~~l~~v~~~v~~PvL~KDFIid~~QI~ea~~~GAD 126 (247)
T PRK13957 63 PVQIAKTYETLGASAISVLT--------DQSYFGGSL--------EDLKSVSSELKIPVLRKDFILDEIQIREARAFGAS 126 (247)
T ss_pred HHHHHHHHHHCCCcEEEEEc--------CCCcCCCCH--------HHHHHHHHhcCCCEEeccccCCHHHHHHHHHcCCC
Confidence 34666778899999997752 223478765 34556667778898877111 100
Q ss_pred CC------ccHHHHHHHHHHHhhhCCccEE-EEecCCcc----cCCC--CcCCcCCCC--CccHHHHHHHHhcCC-CceE
Q 020423 207 DH------DSYNQLCDFIYKVSSLSPTRHF-IIHSRKAL----LNGI--SPAENRTIP--PLKYEYYYALLRDFP-DLTF 270 (326)
Q Consensus 207 ~~------~~~~e~~~~ia~~le~~Gvd~I-~v~~~~~~----~~g~--~~~~~~~~~--~~~~~~i~~i~~~~~-~iPV 270 (326)
-. .+.+++.+ +.......|.+.+ .||...-. ..|. -+-.++... ..+.+...++....+ +..+
T Consensus 127 avLLI~~~L~~~~l~~-l~~~a~~lGle~LVEVh~~~El~~a~~~ga~iiGINnRdL~t~~vd~~~~~~L~~~ip~~~~~ 205 (247)
T PRK13957 127 AILLIVRILTPSQIKS-FLKHASSLGMDVLVEVHTEDEAKLALDCGAEIIGINTRDLDTFQIHQNLVEEVAAFLPPNIVK 205 (247)
T ss_pred EEEeEHhhCCHHHHHH-HHHHHHHcCCceEEEECCHHHHHHHHhCCCCEEEEeCCCCccceECHHHHHHHHhhCCCCcEE
Confidence 00 01112222 1222334555554 34432100 0000 011111111 122334444554444 5778
Q ss_pred EEeCCCCCHHHHHHHHHhCCChhhhhHHHHhCCc
Q 020423 271 TLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW 304 (326)
Q Consensus 271 Ia~GgI~s~~da~~~l~~GaD~V~iGRall~dP~ 304 (326)
|+-+||.+++|+..+... +|+|.||++++..++
T Consensus 206 IsESGI~t~~d~~~l~~~-~davLvG~~lm~~~d 238 (247)
T PRK13957 206 VGESGIESRSDLDKFRKL-VDAALIGTYFMEKKD 238 (247)
T ss_pred EEcCCCCCHHHHHHHHHh-CCEEEECHHHhCCCC
Confidence 999999999999998876 999999999999988
|
|
| >PLN02617 imidazole glycerol phosphate synthase hisHF | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0002 Score=72.16 Aligned_cols=79 Identities=13% Similarity=0.082 Sum_probs=60.3
Q ss_pred HHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCH-----------HHHHHHH
Q 020423 218 IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTV-----------DEVNAAL 286 (326)
Q Consensus 218 ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~-----------~da~~~l 286 (326)
+++.+.+.|+|.|++-.-++...+. ......++.++++.+.. .+|+...|||+|. +++.+++
T Consensus 272 ~a~~y~~~Gadel~~~Di~~~~~~~------~~~~~~~~~i~~i~~~~-~ip~~vGGGIr~~~d~~~~~~~~~e~~~~~l 344 (538)
T PLN02617 272 LAGQYYKDGADEVAFLNITGFRDFP------LGDLPMLEVLRRASENV-FVPLTVGGGIRDFTDANGRYYSSLEVASEYF 344 (538)
T ss_pred HHHHHHHcCCCEEEEEECCCCcCCc------ccchhHHHHHHHHHhhC-CCCEEEcCCccccccccccccchHHHHHHHH
Confidence 4566778999999986554321111 01122377888887764 8999999999997 6689999
Q ss_pred HhCCChhhhhHHHHhCC
Q 020423 287 RKGAHHVMVGRAAYQNP 303 (326)
Q Consensus 287 ~~GaD~V~iGRall~dP 303 (326)
..|||-|.|+++++.||
T Consensus 345 ~~GadkV~i~s~Av~~~ 361 (538)
T PLN02617 345 RSGADKISIGSDAVYAA 361 (538)
T ss_pred HcCCCEEEEChHHHhCh
Confidence 99999999999999975
|
|
| >PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4 | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00075 Score=61.79 Aligned_cols=162 Identities=14% Similarity=0.188 Sum_probs=89.1
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEecCCC--CCCc---ccCCCCcccccc--CCHHHHHHHHHHHH-hcCCCcEEEEecc--
Q 020423 134 SNLDNLAKATELANAYNYDEINLNCGC--PSPK---VAGHGCFGVSLM--LDPKFVGEAMSVIA-ANTNVPVSVKCRI-- 203 (326)
Q Consensus 134 ~~~~~f~~aA~~a~~aG~d~Iein~g~--P~~~---~~r~d~yGgsl~--~r~~~l~eiv~avr-~~~~~pv~vK~r~-- 203 (326)
.+.+.+.++++.+.+.|+|.|||-+-. |... +++.. =-+|. -+.+.+.++++.+| +..+.|+.+=.=.
T Consensus 21 P~~~~~~~~~~~l~~~GaD~iEiGiPfSDP~ADGpvIq~A~--~rAL~~G~~~~~~~~~~~~ir~~~~~~pivlm~Y~N~ 98 (259)
T PF00290_consen 21 PDLETTLEILKALEEAGADIIEIGIPFSDPVADGPVIQKAS--QRALKNGFTLEKIFELVKEIRKKEPDIPIVLMTYYNP 98 (259)
T ss_dssp SSHHHHHHHHHHHHHTTBSSEEEE--SSSCTTSSHHHHHHH--HHHHHTT--HHHHHHHHHHHHHHCTSSEEEEEE-HHH
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHH--HHHHHCCCCHHHHHHHHHHHhccCCCCCEEEEeeccH
Confidence 567999999999999999999997532 3210 00000 00001 34677889999999 6778887663111
Q ss_pred ----CCCCC----------------ccHHHHHHHHHHHhhhCCccEEEEecC-Cc---------------c---cCCCCc
Q 020423 204 ----GVDDH----------------DSYNQLCDFIYKVSSLSPTRHFIIHSR-KA---------------L---LNGISP 244 (326)
Q Consensus 204 ----g~~~~----------------~~~~e~~~~ia~~le~~Gvd~I~v~~~-~~---------------~---~~g~~~ 244 (326)
|.+.. ..++|.. .+...+++.|++.|.+-.. +. + ..|.++
T Consensus 99 i~~~G~e~F~~~~~~aGvdGlIipDLP~ee~~-~~~~~~~~~gl~~I~lv~p~t~~~Ri~~i~~~a~gFiY~vs~~GvTG 177 (259)
T PF00290_consen 99 IFQYGIERFFKEAKEAGVDGLIIPDLPPEESE-ELREAAKKHGLDLIPLVAPTTPEERIKKIAKQASGFIYLVSRMGVTG 177 (259)
T ss_dssp HHHH-HHHHHHHHHHHTEEEEEETTSBGGGHH-HHHHHHHHTT-EEEEEEETTS-HHHHHHHHHH-SSEEEEESSSSSSS
T ss_pred HhccchHHHHHHHHHcCCCEEEEcCCChHHHH-HHHHHHHHcCCeEEEEECCCCCHHHHHHHHHhCCcEEEeeccCCCCC
Confidence 10000 0011111 1223344556665554222 10 0 113232
Q ss_pred CCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHh
Q 020423 245 AENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 301 (326)
Q Consensus 245 ~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~ 301 (326)
... ..+..-.+.+..+++ ..++||...=||++++++.++. .|||+|.||++++.
T Consensus 178 ~~~-~~~~~l~~~i~~ik~-~~~~Pv~vGFGI~~~e~~~~~~-~~aDGvIVGSa~v~ 231 (259)
T PF00290_consen 178 SRT-ELPDELKEFIKRIKK-HTDLPVAVGFGISTPEQAKKLA-AGADGVIVGSAFVK 231 (259)
T ss_dssp TTS-SCHHHHHHHHHHHHH-TTSS-EEEESSS-SHHHHHHHH-TTSSEEEESHHHHH
T ss_pred Ccc-cchHHHHHHHHHHHh-hcCcceEEecCCCCHHHHHHHH-ccCCEEEECHHHHH
Confidence 211 111111345555554 4599999999999999999999 89999999999874
|
2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: |
| >TIGR02317 prpB methylisocitrate lyase | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.012 Score=54.71 Aligned_cols=171 Identities=8% Similarity=0.057 Sum_probs=104.9
Q ss_pred CCCCcEEEEec---CCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC-CCcE
Q 020423 122 PEQHPIVLQIG---GSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPV 197 (326)
Q Consensus 122 ~~~~piivQL~---g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~-~~pv 197 (326)
..+.|+++-+- |. +.+..+..++..++|+.+|.|-=... .+|.+++++.-+-..+...+-|++++++. +.++
T Consensus 71 ~~~iPviaD~d~GyG~-~~~v~~tv~~~~~aG~agi~IEDq~~---pK~cgh~~g~~lv~~ee~~~kI~Aa~~a~~~~d~ 146 (285)
T TIGR02317 71 VTDLPLLVDADTGFGE-AFNVARTVREMEDAGAAAVHIEDQVL---PKRCGHLPGKELVSREEMVDKIAAAVDAKRDEDF 146 (285)
T ss_pred ccCCCEEEECCCCCCC-HHHHHHHHHHHHHcCCeEEEEecCCC---ccccCCCCCccccCHHHHHHHHHHHHHhccCCCE
Confidence 35678988873 44 89999999999999999999953321 13345555543334554444455555543 4456
Q ss_pred EEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEE---eC
Q 020423 198 SVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTL---NG 274 (326)
Q Consensus 198 ~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa---~G 274 (326)
.+=-|........++|.++. ++.+.++|+|.|-+++-. ..+.+.++.++. ++|++. .|
T Consensus 147 ~IiARTDa~~~~g~deAI~R-a~ay~~AGAD~vfi~g~~-----------------~~e~i~~~~~~i-~~Pl~~n~~~~ 207 (285)
T TIGR02317 147 VIIARTDARAVEGLDAAIER-AKAYVEAGADMIFPEALT-----------------SLEEFRQFAKAV-KVPLLANMTEF 207 (285)
T ss_pred EEEEEcCcccccCHHHHHHH-HHHHHHcCCCEEEeCCCC-----------------CHHHHHHHHHhc-CCCEEEEeccC
Confidence 55555543333346666665 345567999999987632 145566676665 678843 34
Q ss_pred CCCCHHHHHHHHHhCCChhhhhHHHHhCCchhHHhHHHhhh
Q 020423 275 GINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIY 315 (326)
Q Consensus 275 gI~s~~da~~~l~~GaD~V~iGRall~dP~l~~~~i~~~~~ 315 (326)
|-.-.-++.++-+.|+..|..|..++..-.-.....-..+.
T Consensus 208 ~~~p~~s~~eL~~lGv~~v~~~~~~~~aa~~a~~~~~~~l~ 248 (285)
T TIGR02317 208 GKTPLFTADELREAGYKMVIYPVTAFRAMNKAAEAVYNEIK 248 (285)
T ss_pred CCCCCCCHHHHHHcCCcEEEEchHHHHHHHHHHHHHHHHHH
Confidence 43222356677789999999997776543333344434343
|
Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus. |
| >cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF) | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00022 Score=64.47 Aligned_cols=83 Identities=19% Similarity=0.260 Sum_probs=65.6
Q ss_pred HHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhH
Q 020423 218 IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGR 297 (326)
Q Consensus 218 ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGR 297 (326)
+++.+++.|+|.+|+-.-++.. | .+.+.+.+.++.+.. .+||...|||++.+++++++..||+-|.+|+
T Consensus 40 ~a~~~~~~g~~~l~i~DLd~~~-~---------~~~n~~~i~~i~~~~-~~~v~vgGGir~~edv~~~l~~Ga~~viigt 108 (233)
T cd04723 40 VARAYKELGFRGLYIADLDAIM-G---------RGDNDEAIRELAAAW-PLGLWVDGGIRSLENAQEWLKRGASRVIVGT 108 (233)
T ss_pred HHHHHHHCCCCEEEEEeCcccc-C---------CCccHHHHHHHHHhC-CCCEEEecCcCCHHHHHHHHHcCCCeEEEcc
Confidence 3556677899999997654321 2 123477888887765 8999999999999999999999999999999
Q ss_pred HHHhCCchhHHhHHH
Q 020423 298 AAYQNPWYTLGHVDT 312 (326)
Q Consensus 298 all~dP~l~~~~i~~ 312 (326)
..+.| +++.+.+++
T Consensus 109 ~~~~~-~~~~~~~~~ 122 (233)
T cd04723 109 ETLPS-DDDEDRLAA 122 (233)
T ss_pred eeccc-hHHHHHHHh
Confidence 99999 865555555
|
The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl |
| >PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.0018 Score=67.10 Aligned_cols=158 Identities=21% Similarity=0.187 Sum_probs=93.2
Q ss_pred HHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEecc------------CC
Q 020423 138 NLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRI------------GV 205 (326)
Q Consensus 138 ~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~------------g~ 205 (326)
+..+.|+...+.|+++|-+.. ....|||++ +-+..+|+.+++||..|==+ |.
T Consensus 71 d~~~~a~~y~~~GA~aiSVlT--------e~~~F~Gs~--------~~l~~vr~~v~~PvLrKDFIid~~QI~ea~~~GA 134 (695)
T PRK13802 71 DPAALAREYEQGGASAISVLT--------EGRRFLGSL--------DDFDKVRAAVHIPVLRKDFIVTDYQIWEARAHGA 134 (695)
T ss_pred CHHHHHHHHHHcCCcEEEEec--------CcCcCCCCH--------HHHHHHHHhCCCCEEeccccCCHHHHHHHHHcCC
Confidence 345667778889999999952 234578776 34566677788998777111 11
Q ss_pred CCC------ccHHHHHHHHHHHhhhCCccEE-EEecCCcc----cCCC--CcCCcCCCCC--ccHHHHHHHHhcCC-Cce
Q 020423 206 DDH------DSYNQLCDFIYKVSSLSPTRHF-IIHSRKAL----LNGI--SPAENRTIPP--LKYEYYYALLRDFP-DLT 269 (326)
Q Consensus 206 ~~~------~~~~e~~~~ia~~le~~Gvd~I-~v~~~~~~----~~g~--~~~~~~~~~~--~~~~~i~~i~~~~~-~iP 269 (326)
+-. -+-+++.+ +.+...+.|.+.+ .||...-. ..|. -+-.++...+ .+.+...++.+..+ ++.
T Consensus 135 DavLLI~~~L~~~~l~~-l~~~a~~lGme~LvEvh~~~el~~a~~~ga~iiGINnRdL~tf~vd~~~t~~L~~~ip~~~~ 213 (695)
T PRK13802 135 DLVLLIVAALDDAQLKH-LLDLAHELGMTVLVETHTREEIERAIAAGAKVIGINARNLKDLKVDVNKYNELAADLPDDVI 213 (695)
T ss_pred CEeehhHhhcCHHHHHH-HHHHHHHcCCeEEEEeCCHHHHHHHHhCCCCEEEEeCCCCccceeCHHHHHHHHhhCCCCcE
Confidence 100 01112222 2233445677665 35543210 0010 0111122221 22334445554444 578
Q ss_pred EEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhCCchhHHhHHHh
Q 020423 270 FTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTA 313 (326)
Q Consensus 270 VIa~GgI~s~~da~~~l~~GaD~V~iGRall~dP~l~~~~i~~~ 313 (326)
+|+-+||.+++|+..+.+.|+|+|.||.+++..|+ ....+++.
T Consensus 214 ~VsESGI~~~~d~~~l~~~G~davLIGeslm~~~d-p~~~~~~l 256 (695)
T PRK13802 214 KVAESGVFGAVEVEDYARAGADAVLVGEGVATADD-HELAVERL 256 (695)
T ss_pred EEEcCCCCCHHHHHHHHHCCCCEEEECHHhhCCCC-HHHHHHHH
Confidence 89999999999999999999999999999999998 34444443
|
|
| >PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00048 Score=60.82 Aligned_cols=75 Identities=17% Similarity=0.084 Sum_probs=55.0
Q ss_pred hCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhCC
Q 020423 224 LSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNP 303 (326)
Q Consensus 224 ~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~dP 303 (326)
+.|+|+|.++.-... + +.. ...++..++.+.++.+...++||++.||| +.+++.++++.|||+|.+|+++..++
T Consensus 122 ~~gaD~v~~~~~~~~--~-~~~--~~~~~~g~~~~~~~~~~~~~~~v~a~GGI-~~~~i~~~~~~Ga~gv~~gs~i~~~~ 195 (212)
T PRK00043 122 AAGADYVGVGPIFPT--P-TKK--DAKAPQGLEGLREIRAAVGDIPIVAIGGI-TPENAPEVLEAGADGVAVVSAITGAE 195 (212)
T ss_pred HcCCCEEEECCccCC--C-CCC--CCCCCCCHHHHHHHHHhcCCCCEEEECCc-CHHHHHHHHHcCCCEEEEeHHhhcCC
Confidence 589999988743221 1 000 11122337778777766534999999999 79999999999999999999999877
Q ss_pred c
Q 020423 304 W 304 (326)
Q Consensus 304 ~ 304 (326)
+
T Consensus 196 d 196 (212)
T PRK00043 196 D 196 (212)
T ss_pred C
Confidence 6
|
|
| >PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0018 Score=63.84 Aligned_cols=125 Identities=13% Similarity=0.118 Sum_probs=82.1
Q ss_pred HHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEe-ccCCCCCccHHHHHHHHHH
Q 020423 142 ATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKC-RIGVDDHDSYNQLCDFIYK 220 (326)
Q Consensus 142 aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~-r~g~~~~~~~~e~~~~ia~ 220 (326)
-++.+.++|+|+|-++...+ ...+.++++.+++ .+.++.+.+ +.. .+.+. + +
T Consensus 73 ~v~~a~~aGAdgV~v~g~~~-----------------~~~~~~~i~~a~~-~G~~~~~g~~s~~----t~~e~----~-~ 125 (430)
T PRK07028 73 EVEMAAKAGADIVCILGLAD-----------------DSTIEDAVRAARK-YGVRLMADLINVP----DPVKR----A-V 125 (430)
T ss_pred HHHHHHHcCCCEEEEecCCC-----------------hHHHHHHHHHHHH-cCCEEEEEecCCC----CHHHH----H-H
Confidence 55668889999998873210 1123556666665 466666542 221 11221 1 2
Q ss_pred HhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHH
Q 020423 221 VSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAY 300 (326)
Q Consensus 221 ~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall 300 (326)
.+.+.|+|+|.++...... ..++..++.++++++.. ++||++.||| +.+.+.++++.|||+|.+||+++
T Consensus 126 ~a~~~GaD~I~~~pg~~~~---------~~~~~~~~~l~~l~~~~-~iPI~a~GGI-~~~n~~~~l~aGAdgv~vGsaI~ 194 (430)
T PRK07028 126 ELEELGVDYINVHVGIDQQ---------MLGKDPLELLKEVSEEV-SIPIAVAGGL-DAETAAKAVAAGADIVIVGGNII 194 (430)
T ss_pred HHHhcCCCEEEEEeccchh---------hcCCChHHHHHHHHhhC-CCcEEEECCC-CHHHHHHHHHcCCCEEEEChHHc
Confidence 2346899999877432100 01122356777777654 7999999999 78999999999999999999999
Q ss_pred hCCc
Q 020423 301 QNPW 304 (326)
Q Consensus 301 ~dP~ 304 (326)
..++
T Consensus 195 ~~~d 198 (430)
T PRK07028 195 KSAD 198 (430)
T ss_pred CCCC
Confidence 8776
|
|
| >PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.004 Score=54.33 Aligned_cols=150 Identities=15% Similarity=0.168 Sum_probs=89.2
Q ss_pred CCcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCc---------ccCCCCccccccCCHHHHHHHHHH------
Q 020423 124 QHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPK---------VAGHGCFGVSLMLDPKFVGEAMSV------ 188 (326)
Q Consensus 124 ~~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~---------~~r~d~yGgsl~~r~~~l~eiv~a------ 188 (326)
..+++.=+.+.++++..+.++.+.+.|++.||+..-.+... ......+++.+... +.+...++.
T Consensus 11 ~~~~~~v~r~~~~~~~~~~~~~~~~~Gv~~vqlr~k~~~~~e~~~~~~~~~~~~~~g~gtvl~~-d~~~~A~~~gAdgv~ 89 (187)
T PRK07455 11 QHRAIAVIRAPDLELGLQMAEAVAAGGMRLIEITWNSDQPAELISQLREKLPECIIGTGTILTL-EDLEEAIAAGAQFCF 89 (187)
T ss_pred hCCEEEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCCCCHHHHHHHHHHhCCCcEEeEEEEEcH-HHHHHHHHcCCCEEE
Confidence 34566667788999999999999999999999975433210 00000112222222 222222111
Q ss_pred ----------HHhcCCCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHH
Q 020423 189 ----------IAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYY 258 (326)
Q Consensus 189 ----------vr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i 258 (326)
+++..+.+. -+| ..+.+|+.+ . .+.|+|++-+.... .....+++
T Consensus 90 ~p~~~~~~~~~~~~~~~~~----i~G---~~t~~e~~~----A-~~~Gadyv~~Fpt~--------------~~~G~~~l 143 (187)
T PRK07455 90 TPHVDPELIEAAVAQDIPI----IPG---ALTPTEIVT----A-WQAGASCVKVFPVQ--------------AVGGADYI 143 (187)
T ss_pred CCCCCHHHHHHHHHcCCCE----EcC---cCCHHHHHH----H-HHCCCCEEEECcCC--------------cccCHHHH
Confidence 001111111 122 123333322 2 24788888762210 11236777
Q ss_pred HHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHh
Q 020423 259 YALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 301 (326)
Q Consensus 259 ~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~ 301 (326)
+++.+..+++|+++.||| +++++.++++.|+++|.++++++.
T Consensus 144 ~~~~~~~~~ipvvaiGGI-~~~n~~~~l~aGa~~vav~s~i~~ 185 (187)
T PRK07455 144 KSLQGPLGHIPLIPTGGV-TLENAQAFIQAGAIAVGLSGQLFP 185 (187)
T ss_pred HHHHhhCCCCcEEEeCCC-CHHHHHHHHHCCCeEEEEehhccc
Confidence 787777668999999999 889999999999999999998864
|
|
| >COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0014 Score=58.12 Aligned_cols=74 Identities=19% Similarity=0.119 Sum_probs=55.8
Q ss_pred hhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhC
Q 020423 223 SLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN 302 (326)
Q Consensus 223 e~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~d 302 (326)
++.|+|||.+..-..... . ...++..++.+..+.+. ..+|+++-||| +++.+.++++.|||+|.+-|+++..
T Consensus 121 ~~~g~DYv~~GpifpT~t---K---~~~~~~G~~~l~~~~~~-~~iP~vAIGGi-~~~nv~~v~~~Ga~gVAvvsai~~a 192 (211)
T COG0352 121 EELGADYVGLGPIFPTST---K---PDAPPLGLEGLREIREL-VNIPVVAIGGI-NLENVPEVLEAGADGVAVVSAITSA 192 (211)
T ss_pred HhcCCCEEEECCcCCCCC---C---CCCCccCHHHHHHHHHh-CCCCEEEEcCC-CHHHHHHHHHhCCCeEEehhHhhcC
Confidence 467899998854332111 0 11245567877766654 47999999999 8999999999999999999999987
Q ss_pred Cc
Q 020423 303 PW 304 (326)
Q Consensus 303 P~ 304 (326)
++
T Consensus 193 ~d 194 (211)
T COG0352 193 AD 194 (211)
T ss_pred CC
Confidence 66
|
|
| >PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P) | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00031 Score=63.01 Aligned_cols=69 Identities=19% Similarity=0.342 Sum_probs=49.3
Q ss_pred hCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhCC
Q 020423 224 LSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNP 303 (326)
Q Consensus 224 ~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~dP 303 (326)
-.|..++-+..+.+.++ +. -+.+.+.++...++|+|..|||+|.+++.++.+.|||.|.+|+++..||
T Consensus 151 ~~g~~~iYLEaGSGa~~-----------~v-~~~v~~~~~~~~~~~LivGGGIrs~e~A~~~~~aGAD~IVvGn~iee~~ 218 (230)
T PF01884_consen 151 YLGMPIIYLEAGSGAYG-----------PV-PEEVIAAVKKLSDIPLIVGGGIRSPEQAREMAEAGADTIVVGNAIEEDP 218 (230)
T ss_dssp HTT-SEEEEE--TTSSS------------H-HHHHHHHHHHSSSSEEEEESS--SHHHHHHHHCTTSSEEEESCHHHHHH
T ss_pred HhCCCEEEEEeCCCCCC-----------Cc-cHHHHHHHHhcCCccEEEeCCcCCHHHHHHHHHCCCCEEEECCEEEEcc
Confidence 36888888765432111 11 1445566667679999999999999999999999999999999999999
Q ss_pred c
Q 020423 304 W 304 (326)
Q Consensus 304 ~ 304 (326)
+
T Consensus 219 ~ 219 (230)
T PF01884_consen 219 D 219 (230)
T ss_dssp -
T ss_pred h
Confidence 7
|
This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B. |
| >PRK03512 thiamine-phosphate pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.002 Score=57.37 Aligned_cols=82 Identities=13% Similarity=0.054 Sum_probs=59.1
Q ss_pred hhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhC
Q 020423 223 SLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN 302 (326)
Q Consensus 223 e~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~d 302 (326)
++.|+||+.+..-.....- + ...++..++.+.++.+...++||++-||| +++++.++++.|+++|.+-+++...
T Consensus 119 ~~~gaDYi~lgpvf~T~tK--~---~~~~~~G~~~l~~~~~~~~~~PV~AiGGI-~~~ni~~l~~~Ga~GiAvisai~~~ 192 (211)
T PRK03512 119 LAARPSYIALGHVFPTQTK--Q---MPSAPQGLAQLARHVERLADYPTVAIGGI-SLERAPAVLATGVGSIAVVSAITQA 192 (211)
T ss_pred hhcCCCEEEECCccCCCCC--C---CCCCCCCHHHHHHHHHhcCCCCEEEECCC-CHHHHHHHHHcCCCEEEEhhHhhCC
Confidence 4589999998754321110 0 01233457777777666458999999999 6999999999999999999999987
Q ss_pred CchhHHhHH
Q 020423 303 PWYTLGHVD 311 (326)
Q Consensus 303 P~l~~~~i~ 311 (326)
++ +...+.
T Consensus 193 ~d-~~~~~~ 200 (211)
T PRK03512 193 AD-WRAATA 200 (211)
T ss_pred CC-HHHHHH
Confidence 77 344433
|
|
| >COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0047 Score=54.90 Aligned_cols=144 Identities=16% Similarity=0.196 Sum_probs=92.3
Q ss_pred HHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC-CCcEEEEecc-C----CCC------CccH
Q 020423 144 ELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCRI-G----VDD------HDSY 211 (326)
Q Consensus 144 ~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~-~~pv~vK~r~-g----~~~------~~~~ 211 (326)
+++-.+|+|-|.||.+ ...+|+++.++-+..-.++ =+.+..|-+. | |+- ..+-
T Consensus 90 ~~ll~aGADKVSINsa---------------Av~~p~lI~~~a~~FGsQciVvaIDakr~~~g~~~~~~v~~~gGr~~t~ 154 (256)
T COG0107 90 RKLLRAGADKVSINSA---------------AVKDPELITEAADRFGSQCIVVAIDAKRVPDGENGWYEVFTHGGREDTG 154 (256)
T ss_pred HHHHHcCCCeeeeChh---------------HhcChHHHHHHHHHhCCceEEEEEEeeeccCCCCCcEEEEecCCCcCCC
Confidence 3566789999999842 1256888877777664443 2344455442 1 100 0111
Q ss_pred HHHHHHHHHHhhhCCccEEEEecCC--cccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhC
Q 020423 212 NQLCDFIYKVSSLSPTRHFIIHSRK--ALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKG 289 (326)
Q Consensus 212 ~e~~~~ia~~le~~Gvd~I~v~~~~--~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~G 289 (326)
-+..++. +..++.|+--|-+..-+ ....| .+.++++.+... +++|||++||..++++..+++..|
T Consensus 155 ~d~~~Wa-~~~e~~GAGEIlLtsmD~DGtk~G-----------yDl~l~~~v~~~-v~iPvIASGGaG~~ehf~eaf~~~ 221 (256)
T COG0107 155 LDAVEWA-KEVEELGAGEILLTSMDRDGTKAG-----------YDLELTRAVREA-VNIPVIASGGAGKPEHFVEAFTEG 221 (256)
T ss_pred cCHHHHH-HHHHHcCCceEEEeeecccccccC-----------cCHHHHHHHHHh-CCCCEEecCCCCcHHHHHHHHHhc
Confidence 2344543 44578898888776433 22222 246677666655 599999999999999999999866
Q ss_pred -CChhhhhHHHHhCCchhHHhHHHhhhC
Q 020423 290 -AHHVMVGRAAYQNPWYTLGHVDTAIYG 316 (326)
Q Consensus 290 -aD~V~iGRall~dP~l~~~~i~~~~~~ 316 (326)
||++..++-+...-. -...+++.|..
T Consensus 222 ~adAaLAAsiFH~~~~-~i~evK~yL~~ 248 (256)
T COG0107 222 KADAALAASIFHFGEI-TIGEVKEYLAE 248 (256)
T ss_pred CccHHHhhhhhhcCcc-cHHHHHHHHHH
Confidence 999998887765544 46667776653
|
|
| >PRK02615 thiamine-phosphate pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0016 Score=62.13 Aligned_cols=82 Identities=17% Similarity=0.148 Sum_probs=58.4
Q ss_pred hCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhC-
Q 020423 224 LSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN- 302 (326)
Q Consensus 224 ~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~d- 302 (326)
+.|+|+|.++.-..... . +..++..++.+..+.+.. ++||++-||| +++++.++++.|+++|.++++++..
T Consensus 258 ~~GaDYI~lGPvf~T~t--K----p~~~~~Gle~l~~~~~~~-~iPv~AiGGI-~~~ni~~l~~~Ga~gVAvisaI~~a~ 329 (347)
T PRK02615 258 AEGADYIGVGPVFPTPT--K----PGKAPAGLEYLKYAAKEA-PIPWFAIGGI-DKSNIPEVLQAGAKRVAVVRAIMGAE 329 (347)
T ss_pred HcCCCEEEECCCcCCCC--C----CCCCCCCHHHHHHHHHhC-CCCEEEECCC-CHHHHHHHHHcCCcEEEEeHHHhCCC
Confidence 57999999875432111 0 111244578888777654 8999999999 5999999999999999999999974
Q ss_pred -CchhHHhHHHh
Q 020423 303 -PWYTLGHVDTA 313 (326)
Q Consensus 303 -P~l~~~~i~~~ 313 (326)
|.-..+.+.+.
T Consensus 330 dp~~~~~~l~~~ 341 (347)
T PRK02615 330 DPKQATQELLKQ 341 (347)
T ss_pred CHHHHHHHHHHH
Confidence 44444444443
|
|
| >PRK05283 deoxyribose-phosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0033 Score=57.32 Aligned_cols=136 Identities=15% Similarity=0.142 Sum_probs=84.1
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHH
Q 020423 135 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQL 214 (326)
Q Consensus 135 ~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~ 214 (326)
..+.-..-++.+.+.|+|.||+=+. ||.-...+.+.+.+-+.+|++.++-+..+|+-+-...-. -++.
T Consensus 81 ~t~~K~~Ea~~Ai~~GAdEiD~Vin-----------ig~lk~g~~~~v~~ei~~v~~~~~~~~~lKVIlEt~~L~-~ee~ 148 (257)
T PRK05283 81 DIDIALAETRAAIAYGADEVDVVFP-----------YRALMAGNEQVGFELVKACKEACAANVLLKVIIETGELK-DEAL 148 (257)
T ss_pred cHHHHHHHHHHHHHcCCCEEeeecc-----------HHHHhCCcHHHHHHHHHHHHHHhCCCceEEEEEeccccC-CHHH
Confidence 4455555667788889999998542 344444577888888888888765345566554211111 1121
Q ss_pred HHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcC---CCceEEEeCCCCCHHHHHHHHHhCCC
Q 020423 215 CDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF---PDLTFTLNGGINTVDEVNAALRKGAH 291 (326)
Q Consensus 215 ~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~---~~iPVIa~GgI~s~~da~~~l~~GaD 291 (326)
+..+.++..++|+|+|--+.+... .|. .+.+...+.+..++. .++-|=++|||+|.+++.++++.|.+
T Consensus 149 i~~a~~~a~~aGADFVKTSTGf~~-~gA--------t~edv~lm~~~i~~~~~~~~vgIKAsGGIrt~~~A~~~i~ag~~ 219 (257)
T PRK05283 149 IRKASEIAIKAGADFIKTSTGKVP-VNA--------TLEAARIMLEVIRDMGVAKTVGFKPAGGVRTAEDAAQYLALADE 219 (257)
T ss_pred HHHHHHHHHHhCCCEEEcCCCCCC-CCC--------CHHHHHHHHHHHHhcccCCCeeEEccCCCCCHHHHHHHHHHHHH
Confidence 222445666899999987755321 111 122344444544321 25789999999999999999986544
|
|
| >cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.015 Score=52.85 Aligned_cols=201 Identities=15% Similarity=0.139 Sum_probs=118.0
Q ss_pred CCChHHHHHHHHHcCCCcEEEecceeec-ccccccc---chhhhhh-----cCCCCCcEEEEec-C-CCHHHHHHHHHHH
Q 020423 78 DWTDNHYRTLARLISKHAWLYTEMLAAE-TIIYQQG---NLDRFLA-----FSPEQHPIVLQIG-G-SNLDNLAKATELA 146 (326)
Q Consensus 78 ~~s~~~~r~~~~~~Gg~gli~te~~~~~-~~~~~~~---~~~~~~~-----~~~~~~piivQL~-g-~~~~~f~~aA~~a 146 (326)
++-|..-.+++...| +..+++...... ...+.+. ..+.++. ......|+++-+- | .++++..+.++++
T Consensus 15 ~~~D~~sA~~~e~~G-~~ai~~s~~~~~~s~G~pD~~~~~~~e~~~~~~~I~~~~~~Pv~~D~~~G~g~~~~~~~~v~~~ 93 (243)
T cd00377 15 GAWDALSARLAERAG-FKAIYTSGAGVAASLGLPDGGLLTLDEVLAAVRRIARAVDLPVIADADTGYGNALNVARTVREL 93 (243)
T ss_pred CCCCHHHHHHHHHcC-CCEEEeccHHHHHhcCCCCCCcCCHHHHHHHHHHHHhhccCCEEEEcCCCCCCHHHHHHHHHHH
Confidence 455666666656555 666666543222 1122221 1122211 2334678887752 1 2668889999999
Q ss_pred HHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCC----CcEEEEeccCCCCCccHHHHHHHHHHHh
Q 020423 147 NAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTN----VPVSVKCRIGVDDHDSYNQLCDFIYKVS 222 (326)
Q Consensus 147 ~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~----~pv~vK~r~g~~~~~~~~e~~~~ia~~l 222 (326)
.++|+++|-|.-.... .+.+.+|+...-.++...+.+++++++.+ ++|..+.-.-+.....+++.++. ++..
T Consensus 94 ~~~G~~gv~iED~~~~---k~~g~~~~~~~~~~ee~~~ki~aa~~a~~~~~~~~IiARTDa~~~~~~~~~eai~R-a~ay 169 (243)
T cd00377 94 EEAGAAGIHIEDQVGP---KKCGHHGGKVLVPIEEFVAKIKAARDARDDLPDFVIIARTDALLAGEEGLDEAIER-AKAY 169 (243)
T ss_pred HHcCCEEEEEecCCCC---ccccCCCCCeecCHHHHHHHHHHHHHHHhccCCeEEEEEcCchhccCCCHHHHHHH-HHHH
Confidence 9999999999654332 22344455545567777777777776543 44444422211111346666664 4556
Q ss_pred hhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCC-HHHHHHHHHhCCChhhhhHHHHh
Q 020423 223 SLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT-VDEVNAALRKGAHHVMVGRAAYQ 301 (326)
Q Consensus 223 e~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s-~~da~~~l~~GaD~V~iGRall~ 301 (326)
.++|+|.+-+++.. ..+.+.++.++ ++.||+.+-.=.. .-...++-+.|+..|.+|-.++.
T Consensus 170 ~~AGAD~v~v~~~~-----------------~~~~~~~~~~~-~~~Pl~~~~~~~~~~~~~~~l~~lG~~~v~~~~~~~~ 231 (243)
T cd00377 170 AEAGADGIFVEGLK-----------------DPEEIRAFAEA-PDVPLNVNMTPGGNLLTVAELAELGVRRVSYGLALLR 231 (243)
T ss_pred HHcCCCEEEeCCCC-----------------CHHHHHHHHhc-CCCCEEEEecCCCCCCCHHHHHHCCCeEEEEChHHHH
Confidence 78999999987532 25667777776 4889887632111 13455666789999999887653
|
Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to |
| >COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0019 Score=56.97 Aligned_cols=154 Identities=18% Similarity=0.112 Sum_probs=95.3
Q ss_pred CCCcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEec
Q 020423 123 EQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCR 202 (326)
Q Consensus 123 ~~~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r 202 (326)
.+++++.-+-..+.- .--++.+.++|+|.+-+-+..|..+ +.+.+++. +..+.-+.+-+-
T Consensus 55 pd~~IvAD~Kt~D~G--~~e~~ma~~aGAd~~tV~g~A~~~T-----------------I~~~i~~A-~~~~~~v~iDl~ 114 (217)
T COG0269 55 PDKIIVADLKTADAG--AIEARMAFEAGADWVTVLGAADDAT-----------------IKKAIKVA-KEYGKEVQIDLI 114 (217)
T ss_pred CCCeEEeeeeecchh--HHHHHHHHHcCCCEEEEEecCCHHH-----------------HHHHHHHH-HHcCCeEEEEee
Confidence 356677776443332 2346778899999999976544322 22333333 234555555443
Q ss_pred cCCCCCccHHHHHHHHHHHhhhCCccEEEEecC-CcccCCCCcCCcCCCCCccHHHHHHHHhcCC-CceEEEeCCCCCHH
Q 020423 203 IGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSR-KALLNGISPAENRTIPPLKYEYYYALLRDFP-DLTFTLNGGINTVD 280 (326)
Q Consensus 203 ~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~-~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~-~iPVIa~GgI~s~~ 280 (326)
..+ ++++- ++.+++.|+|++.+|-+ +....|.+. .|+.+..+++... ...|-..||| +++
T Consensus 115 ~~~----~~~~~----~~~l~~~gvd~~~~H~g~D~q~~G~~~---------~~~~l~~ik~~~~~g~~vAVaGGI-~~~ 176 (217)
T COG0269 115 GVW----DPEQR----AKWLKELGVDQVILHRGRDAQAAGKSW---------GEDDLEKIKKLSDLGAKVAVAGGI-TPE 176 (217)
T ss_pred cCC----CHHHH----HHHHHHhCCCEEEEEecccHhhcCCCc---------cHHHHHHHHHhhccCceEEEecCC-CHH
Confidence 332 23332 34566699999999944 332233221 1455555554431 3789999999 899
Q ss_pred HHHHHHHhCCChhhhhHHHHhC--CchhHHhHHHhh
Q 020423 281 EVNAALRKGAHHVMVGRAAYQN--PWYTLGHVDTAI 314 (326)
Q Consensus 281 da~~~l~~GaD~V~iGRall~d--P~l~~~~i~~~~ 314 (326)
++..+...|+|.|.+||++-.. |.-..+++.+.+
T Consensus 177 ~i~~~~~~~~~ivIvGraIt~a~dp~~~a~~~~~~i 212 (217)
T COG0269 177 DIPLFKGIGADIVIVGRAITGAKDPAEAARKFKEEI 212 (217)
T ss_pred HHHHHhcCCCCEEEECchhcCCCCHHHHHHHHHHHH
Confidence 9999999999999999999865 444445554443
|
|
| >PLN02617 imidazole glycerol phosphate synthase hisHF | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.001 Score=67.06 Aligned_cols=159 Identities=8% Similarity=0.085 Sum_probs=97.1
Q ss_pred HHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhc-CCCcEEEE------------------
Q 020423 140 AKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAAN-TNVPVSVK------------------ 200 (326)
Q Consensus 140 ~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~-~~~pv~vK------------------ 200 (326)
.+.++++-++|+|-|-||...-.. . ...|-.+-..+|+++.++.+..-++ +-+.+.+|
T Consensus 337 ~e~~~~~l~~GadkV~i~s~Av~~--~-~~~~~~~~~~~p~~i~~~~~~fg~q~ivvsiD~k~~~~~~~~~~~~~~~~~~ 413 (538)
T PLN02617 337 LEVASEYFRSGADKISIGSDAVYA--A-EEYIASGVKTGKTSIEQISRVYGNQAVVVSIDPRRVYVKDPSDVPFKTVKVT 413 (538)
T ss_pred HHHHHHHHHcCCCEEEEChHHHhC--h-hhhhccccccCHHHHHHHHHHcCCceEEEEEecCcCcccCcccccccccccc
Confidence 355677778999999998532110 0 0012222346799999998887433 11112222
Q ss_pred ---------------eccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCC--cccCCCCcCCcCCCCCccHHHHHHHHh
Q 020423 201 ---------------CRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRK--ALLNGISPAENRTIPPLKYEYYYALLR 263 (326)
Q Consensus 201 ---------------~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~--~~~~g~~~~~~~~~~~~~~~~i~~i~~ 263 (326)
+. ||.+...+ +..++ ++.+++.|+..|.+..-+ ....| .+.++++++.+
T Consensus 414 ~~~~~~~~~~~~~v~~~-gg~~~~~~-~~~~~-~~~~~~~Gageil~t~id~DGt~~G-----------~d~~l~~~v~~ 479 (538)
T PLN02617 414 NPGPNGEEYAWYQCTVK-GGREGRPI-GAYEL-AKAVEELGAGEILLNCIDCDGQGKG-----------FDIELVKLVSD 479 (538)
T ss_pred ccCcCcccceEEEEEEe-cCcccCCC-CHHHH-HHHHHhcCCCEEEEeeccccccccC-----------cCHHHHHHHHh
Confidence 11 12221111 22332 345577999988886443 22222 34777777766
Q ss_pred cCCCceEEEeCCCCCHHHHHHHHH-hCCChhhhhHHHHhCCchhHHhHHHhhhCC
Q 020423 264 DFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQNPWYTLGHVDTAIYGA 317 (326)
Q Consensus 264 ~~~~iPVIa~GgI~s~~da~~~l~-~GaD~V~iGRall~dP~l~~~~i~~~~~~~ 317 (326)
. +++|||++||+.+++|+.+++. .|||++..|.-+...-. -...+++.|...
T Consensus 480 ~-~~ipviasGG~g~~~d~~~~~~~~~~~a~~aa~~fh~~~~-~~~~~k~~l~~~ 532 (538)
T PLN02617 480 A-VTIPVIASSGAGTPEHFSDVFSKTNASAALAAGIFHRKEV-PISSVKEHLLEE 532 (538)
T ss_pred h-CCCCEEEECCCCCHHHHHHHHhcCCccEEEEEeeeccCCC-CHHHHHHHHHHC
Confidence 5 5999999999999999999998 67999988876654433 456666666543
|
|
| >TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0037 Score=58.10 Aligned_cols=148 Identities=12% Similarity=0.201 Sum_probs=90.8
Q ss_pred CcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEecc-
Q 020423 125 HPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRI- 203 (326)
Q Consensus 125 ~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~- 203 (326)
.|++++|-|... .+..+++.+.||+.|.+-...- ++..+.+...++++-.++ .+.++-..+..
T Consensus 75 vpv~lhlDH~~~---~e~i~~ai~~Gf~sVmid~s~l------------~~~eni~~t~~v~~~a~~-~gv~Ve~ElG~~ 138 (282)
T TIGR01859 75 VPVALHLDHGSS---YESCIKAIKAGFSSVMIDGSHL------------PFEENLALTKKVVEIAHA-KGVSVEAELGTL 138 (282)
T ss_pred CeEEEECCCCCC---HHHHHHHHHcCCCEEEECCCCC------------CHHHHHHHHHHHHHHHHH-cCCEEEEeeCCC
Confidence 678888765432 2344555667888887753211 112344555555555433 35555544432
Q ss_pred -CCCC--------CccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeC
Q 020423 204 -GVDD--------HDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNG 274 (326)
Q Consensus 204 -g~~~--------~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~G 274 (326)
|.++ ..+.++..+ ..++.|+|+|.++-++.. |.. ...+..+++.++++.+.. ++|+++-|
T Consensus 139 gg~ed~~~g~~~~~t~~eea~~----f~~~tgvD~Lavs~Gt~h--g~~----~~~~~l~~e~L~~i~~~~-~iPlv~hG 207 (282)
T TIGR01859 139 GGIEDGVDEKEAELADPDEAEQ----FVKETGVDYLAAAIGTSH--GKY----KGEPGLDFERLKEIKELT-NIPLVLHG 207 (282)
T ss_pred cCccccccccccccCCHHHHHH----HHHHHCcCEEeeccCccc--ccc----CCCCccCHHHHHHHHHHh-CCCEEEEC
Confidence 1111 123444433 334479999998754421 110 012456688898887765 89999999
Q ss_pred --CCCCHHHHHHHHHhCCChhhhhHHHH
Q 020423 275 --GINTVDEVNAALRKGAHHVMVGRAAY 300 (326)
Q Consensus 275 --gI~s~~da~~~l~~GaD~V~iGRall 300 (326)
|| +.+++.++++.|++.|-+++.+.
T Consensus 208 gSGi-~~e~i~~~i~~Gi~kiNv~T~l~ 234 (282)
T TIGR01859 208 ASGI-PEEQIKKAIKLGIAKINIDTDCR 234 (282)
T ss_pred CCCC-CHHHHHHHHHcCCCEEEECcHHH
Confidence 88 67889999999999999999886
|
This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase. |
| >COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0092 Score=54.22 Aligned_cols=153 Identities=20% Similarity=0.215 Sum_probs=88.1
Q ss_pred HHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEecc------------CCCCC
Q 020423 141 KATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRI------------GVDDH 208 (326)
Q Consensus 141 ~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~------------g~~~~ 208 (326)
+.|+..+++|+++|-+-.- ...|.|++ + .+..+|+.++.|+..|==+ |.+-.
T Consensus 70 ~ia~~Ye~~GAa~iSVLTd--------~~~F~Gs~----e----~L~~v~~~v~~PvL~KDFiiD~yQI~~Ar~~GADav 133 (254)
T COG0134 70 EIAKAYEEGGAAAISVLTD--------PKYFQGSF----E----DLRAVRAAVDLPVLRKDFIIDPYQIYEARAAGADAV 133 (254)
T ss_pred HHHHHHHHhCCeEEEEecC--------ccccCCCH----H----HHHHHHHhcCCCeeeccCCCCHHHHHHHHHcCcccH
Confidence 4566778889999988431 23355543 3 3566777889999888111 11100
Q ss_pred ------ccHHHHHHHHHHHhhhCCccEEE-EecCCcc----cCCC--CcCCcCCCCC--ccHHHHHHHHhcCC-CceEEE
Q 020423 209 ------DSYNQLCDFIYKVSSLSPTRHFI-IHSRKAL----LNGI--SPAENRTIPP--LKYEYYYALLRDFP-DLTFTL 272 (326)
Q Consensus 209 ------~~~~e~~~~ia~~le~~Gvd~I~-v~~~~~~----~~g~--~~~~~~~~~~--~~~~~i~~i~~~~~-~iPVIa 272 (326)
-+-+++.+ +.....+.|.+.++ ||...-. ..|. -+-.++.... .+.+...++....+ +..+|.
T Consensus 134 LLI~~~L~~~~l~e-l~~~A~~LGm~~LVEVh~~eEl~rAl~~ga~iIGINnRdL~tf~vdl~~t~~la~~~p~~~~~Is 212 (254)
T COG0134 134 LLIVAALDDEQLEE-LVDRAHELGMEVLVEVHNEEELERALKLGAKIIGINNRDLTTLEVDLETTEKLAPLIPKDVILIS 212 (254)
T ss_pred HHHHHhcCHHHHHH-HHHHHHHcCCeeEEEECCHHHHHHHHhCCCCEEEEeCCCcchheecHHHHHHHHhhCCCCcEEEe
Confidence 00111222 22333457777654 5543210 0010 0111122111 22333444444444 477899
Q ss_pred eCCCCCHHHHHHHHHhCCChhhhhHHHHhCCchhHHhHH
Q 020423 273 NGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVD 311 (326)
Q Consensus 273 ~GgI~s~~da~~~l~~GaD~V~iGRall~dP~l~~~~i~ 311 (326)
-.||.+++|+..+...|+|++.||+++|.+++. ...+.
T Consensus 213 ESGI~~~~dv~~l~~~ga~a~LVG~slM~~~~~-~~a~~ 250 (254)
T COG0134 213 ESGISTPEDVRRLAKAGADAFLVGEALMRADDP-EEALR 250 (254)
T ss_pred cCCCCCHHHHHHHHHcCCCEEEecHHHhcCCCH-HHHHH
Confidence 999999999999999999999999999999994 44433
|
|
| >COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.031 Score=50.92 Aligned_cols=161 Identities=17% Similarity=0.251 Sum_probs=95.7
Q ss_pred CCCcEEEEecCCC---H----HHHHHHHHHHHHCCCCEEEecC--CCCCCcccCCCCccccccCCHHHHHHHHHHHHh--
Q 020423 123 EQHPIVLQIGGSN---L----DNLAKATELANAYNYDEINLNC--GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAA-- 191 (326)
Q Consensus 123 ~~~piivQL~g~~---~----~~f~~aA~~a~~aG~d~Iein~--g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~-- 191 (326)
.+.|+++.|.+.+ + +.+....+.+..+|+|+|-.+. |+.. ..+.+.++.+.+.+
T Consensus 76 ~dvplivkl~~~t~l~~~~~~~~~~~~ve~ai~lgadAV~~~Vy~Gse~---------------e~~~i~~~~~v~~~a~ 140 (265)
T COG1830 76 HDVPLIVKLNGSTSLSPDPNDQVLVATVEDAIRLGADAVGATVYVGSET---------------EREMIENISQVVEDAH 140 (265)
T ss_pred CCcCEEEEeccccccCCCcccceeeeeHHHHHhCCCcEEEEEEecCCcc---------------hHHHHHHHHHHHHHHH
Confidence 4678888887652 1 2233344566788999887653 3322 13344444433322
Q ss_pred cCCCcEEEEecc-CCCCC---ccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCC
Q 020423 192 NTNVPVSVKCRI-GVDDH---DSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPD 267 (326)
Q Consensus 192 ~~~~pv~vK~r~-g~~~~---~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~ 267 (326)
..|.|+.+-+-+ |.... +...+.....+++-.+.|+|.|-+. + +.+.+-++++.+..+
T Consensus 141 ~~Gmp~v~~~YpRg~~~~~~~~~d~~~v~~aaRlaaelGADIiK~~-----y------------tg~~e~F~~vv~~~~- 202 (265)
T COG1830 141 ELGMPLVAWAYPRGPAIKDEYHRDADLVGYAARLAAELGADIIKTK-----Y------------TGDPESFRRVVAACG- 202 (265)
T ss_pred HcCCceEEEEeccCCcccccccccHHHHHHHHHHHHHhcCCeEeec-----C------------CCChHHHHHHHHhCC-
Confidence 358998774322 22111 1222344445667778999999642 1 112355667777775
Q ss_pred ceEEEeCCCCC--HHHH----HHHHHhCCChhhhhHHHHhC--CchhHHhHHHhhhC
Q 020423 268 LTFTLNGGINT--VDEV----NAALRKGAHHVMVGRAAYQN--PWYTLGHVDTAIYG 316 (326)
Q Consensus 268 iPVIa~GgI~s--~~da----~~~l~~GaD~V~iGRall~d--P~l~~~~i~~~~~~ 316 (326)
+||+.+||=.+ .+++ ..+++.||.++.+||=+.+. |.-+.+.+....+.
T Consensus 203 vpVviaGG~k~~~~~~~l~~~~~ai~aGa~G~~~GRNifQ~~~p~~m~~Ai~~Ivhe 259 (265)
T COG1830 203 VPVVIAGGPKTETEREFLEMVTAAIEAGAMGVAVGRNIFQHEDPEAMVKAIQAIVHE 259 (265)
T ss_pred CCEEEeCCCCCCChHHHHHHHHHHHHccCcchhhhhhhhccCChHHHHHHHHHHhcC
Confidence 99999999766 3333 34556899999999999975 44445555554443
|
|
| >PRK11320 prpB 2-methylisocitrate lyase; Provisional | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.042 Score=51.27 Aligned_cols=158 Identities=8% Similarity=0.066 Sum_probs=99.0
Q ss_pred CCCCcEEEEe---cCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC-CCcE
Q 020423 122 PEQHPIVLQI---GGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPV 197 (326)
Q Consensus 122 ~~~~piivQL---~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~-~~pv 197 (326)
..+.|+++-+ +| ++.+..+..++..++|+.+|.|-=... .+|.+++++.-+-..+...+-+++++++. +.++
T Consensus 76 ~~~iPviaD~d~GyG-~~~~v~r~V~~~~~aGaagi~IEDq~~---pK~cg~~~~~~lv~~ee~~~kI~Aa~~a~~~~d~ 151 (292)
T PRK11320 76 ACDLPLLVDIDTGFG-GAFNIARTVKSMIKAGAAAVHIEDQVG---AKRCGHRPNKEIVSQEEMVDRIKAAVDARTDPDF 151 (292)
T ss_pred ccCCCEEEECCCCCC-CHHHHHHHHHHHHHcCCeEEEEecCCC---ccccCCCCCCcccCHHHHHHHHHHHHHhccCCCe
Confidence 3567888887 34 889999999999999999999953221 13345554433334444444445554443 5556
Q ss_pred EEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEE---eC
Q 020423 198 SVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTL---NG 274 (326)
Q Consensus 198 ~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa---~G 274 (326)
.+=-|........++|.++. ++.+.++|+|.|-+++-. ..+.++++.++. +.|+++ .+
T Consensus 152 ~IiARTDa~~~~g~deAI~R-a~aY~eAGAD~ifi~~~~-----------------~~~~i~~~~~~~-~~Pl~~n~~~~ 212 (292)
T PRK11320 152 VIMARTDALAVEGLDAAIER-AQAYVEAGADMIFPEAMT-----------------ELEMYRRFADAV-KVPILANITEF 212 (292)
T ss_pred EEEEecCcccccCHHHHHHH-HHHHHHcCCCEEEecCCC-----------------CHHHHHHHHHhc-CCCEEEEeccC
Confidence 65555543223346677665 345667999999987632 145566666664 778744 34
Q ss_pred CCCCHHHHHHHHHhCCChhhhhHHHHhC
Q 020423 275 GINTVDEVNAALRKGAHHVMVGRAAYQN 302 (326)
Q Consensus 275 gI~s~~da~~~l~~GaD~V~iGRall~d 302 (326)
|-.-.-...++-+.|+..|..|..++..
T Consensus 213 ~~~p~~s~~~L~~lGv~~v~~~~~~~~a 240 (292)
T PRK11320 213 GATPLFTTEELASAGVAMVLYPLSAFRA 240 (292)
T ss_pred CCCCCCCHHHHHHcCCcEEEEChHHHHH
Confidence 4321124566777899999999776544
|
|
| >PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5 | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.00075 Score=59.59 Aligned_cols=149 Identities=17% Similarity=0.256 Sum_probs=86.5
Q ss_pred EEEEecCCCHHHHHHHHHHHHHCCCCEEEecC--CCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccC
Q 020423 127 IVLQIGGSNLDNLAKATELANAYNYDEINLNC--GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIG 204 (326)
Q Consensus 127 iivQL~g~~~~~f~~aA~~a~~aG~d~Iein~--g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g 204 (326)
+..+|...+...+.+..+++.++|+|.+-+-. |.-.++ . .|| -++++++|+.++.|+.+-+=..
T Consensus 2 I~pSil~ad~~~l~~~i~~l~~~g~d~lHiDiMDg~fvpn-~---~~g----------~~~i~~i~~~~~~~~DvHLMv~ 67 (201)
T PF00834_consen 2 ISPSILSADFLNLEEEIKRLEEAGADWLHIDIMDGHFVPN-L---TFG----------PDIIKAIRKITDLPLDVHLMVE 67 (201)
T ss_dssp EEEBGGGS-GGGHHHHHHHHHHTT-SEEEEEEEBSSSSSS-B----B-----------HHHHHHHHTTSSSEEEEEEESS
T ss_pred eehhhhhCCHHHHHHHHHHHHHcCCCEEEEeecccccCCc-c---cCC----------HHHHHHHhhcCCCcEEEEeeec
Confidence 56778888888999999999999999776642 221111 0 133 4567777888888988876442
Q ss_pred CCCCccHHHHHHHHHHHhhhCCccEEEEecCCcc-----------c---------------------------------C
Q 020423 205 VDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKAL-----------L---------------------------------N 240 (326)
Q Consensus 205 ~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~-----------~---------------------------------~ 240 (326)
+... .+ . .+.++|+|+|++|-.... . .
T Consensus 68 --~P~~---~i---~-~~~~~g~~~i~~H~E~~~~~~~~i~~ik~~g~k~GialnP~T~~~~~~~~l~~vD~VlvMsV~P 138 (201)
T PF00834_consen 68 --NPER---YI---E-EFAEAGADYITFHAEATEDPKETIKYIKEAGIKAGIALNPETPVEELEPYLDQVDMVLVMSVEP 138 (201)
T ss_dssp --SGGG---HH---H-HHHHHT-SEEEEEGGGTTTHHHHHHHHHHTTSEEEEEE-TTS-GGGGTTTGCCSSEEEEESS-T
T ss_pred --cHHH---HH---H-HHHhcCCCEEEEcccchhCHHHHHHHHHHhCCCEEEEEECCCCchHHHHHhhhcCEEEEEEecC
Confidence 2221 11 1 223467777777632100 0 0
Q ss_pred CCCcCCcCCCCCccHHHHHHHH---hc-CCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhC
Q 020423 241 GISPAENRTIPPLKYEYYYALL---RD-FPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN 302 (326)
Q Consensus 241 g~~~~~~~~~~~~~~~~i~~i~---~~-~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~d 302 (326)
|.++. ..-+..++.+++++ ++ ..++.|..-||| +.+.+..+.+.|||.+.+|++++.+
T Consensus 139 G~~Gq---~f~~~~~~KI~~l~~~~~~~~~~~~I~vDGGI-~~~~~~~~~~aGad~~V~Gs~iF~~ 200 (201)
T PF00834_consen 139 GFGGQ---KFIPEVLEKIRELRKLIPENGLDFEIEVDGGI-NEENIKQLVEAGADIFVAGSAIFKA 200 (201)
T ss_dssp TTSSB-----HGGHHHHHHHHHHHHHHHTCGSEEEEESSE-STTTHHHHHHHT--EEEESHHHHTS
T ss_pred CCCcc---cccHHHHHHHHHHHHHHHhcCCceEEEEECCC-CHHHHHHHHHcCCCEEEECHHHhCC
Confidence 11110 11111234443332 22 236889999999 6678999999999999999998753
|
1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D .... |
| >PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.015 Score=52.11 Aligned_cols=155 Identities=10% Similarity=0.044 Sum_probs=88.6
Q ss_pred CCcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEecc
Q 020423 124 QHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRI 203 (326)
Q Consensus 124 ~~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~ 203 (326)
..+++.=+.+.++++..+.++.+.+.|+..+||.+..|.. .+.+.++.+..++..+ .+.+ -.
T Consensus 14 ~~~vi~Vvr~~~~~~a~~~~~al~~gGi~~iEiT~~tp~a---------------~~~i~~l~~~~~~~~p-~~~v--Ga 75 (222)
T PRK07114 14 ATGMVPVFYHADVEVAKKVIKACYDGGARVFEFTNRGDFA---------------HEVFAELVKYAAKELP-GMIL--GV 75 (222)
T ss_pred hCCEEEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCCCcH---------------HHHHHHHHHHHHhhCC-CeEE--ee
Confidence 3456666778899999999999999999999998755432 2222333333322211 1222 11
Q ss_pred CCCCCccHHHHHHHHHHHhhhCCccEEEEecCCc------------ccCC-CCc----------CCcCCCCC---ccHHH
Q 020423 204 GVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKA------------LLNG-ISP----------AENRTIPP---LKYEY 257 (326)
Q Consensus 204 g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~------------~~~g-~~~----------~~~~~~~~---~~~~~ 257 (326)
| ...+.++. +...++|++++.--+-+. ...| +++ .+.-.+.| ....+
T Consensus 76 G--TVl~~e~a-----~~a~~aGA~FiVsP~~~~~v~~~~~~~~i~~iPG~~TpsEi~~A~~~Ga~~vKlFPA~~~G~~~ 148 (222)
T PRK07114 76 G--SIVDAATA-----ALYIQLGANFIVTPLFNPDIAKVCNRRKVPYSPGCGSLSEIGYAEELGCEIVKLFPGSVYGPGF 148 (222)
T ss_pred E--eCcCHHHH-----HHHHHcCCCEEECCCCCHHHHHHHHHcCCCEeCCCCCHHHHHHHHHCCCCEEEECcccccCHHH
Confidence 1 11122221 112245666653211110 0000 000 00000111 12456
Q ss_pred HHHHHhcCCCceEEEeCCCCC-HHHHHHHHHhCCChhhhhHHHHhCC
Q 020423 258 YYALLRDFPDLTFTLNGGINT-VDEVNAALRKGAHHVMVGRAAYQNP 303 (326)
Q Consensus 258 i~~i~~~~~~iPVIa~GgI~s-~~da~~~l~~GaD~V~iGRall~dP 303 (326)
++.+..-++++|++.+|||+. .+++.+.++.|+.+|.+|+.+..+.
T Consensus 149 ikal~~p~p~i~~~ptGGV~~~~~n~~~yl~aGa~avg~Gs~L~~~~ 195 (222)
T PRK07114 149 VKAIKGPMPWTKIMPTGGVEPTEENLKKWFGAGVTCVGMGSKLIPKE 195 (222)
T ss_pred HHHHhccCCCCeEEeCCCCCcchhcHHHHHhCCCEEEEEChhhcCcc
Confidence 777776678999999999974 5899999999999999999997544
|
|
| >PRK07315 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0069 Score=56.59 Aligned_cols=152 Identities=13% Similarity=0.182 Sum_probs=92.2
Q ss_pred CCcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEecc
Q 020423 124 QHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRI 203 (326)
Q Consensus 124 ~~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~ 203 (326)
..|+++.|-|.+.+ ..+.+.+.||+.|.+-... -+++.+.+..+++++-.+ ..+.+|-..+..
T Consensus 77 ~vPV~lHLDH~~~~----~i~~ai~~GftSVm~d~S~------------l~~eEni~~t~~v~~~a~-~~gv~vE~ElG~ 139 (293)
T PRK07315 77 TVPVAIHLDHGHYE----DALECIEVGYTSIMFDGSH------------LPVEENLKLAKEVVEKAH-AKGISVEAEVGT 139 (293)
T ss_pred CCcEEEECCCCCHH----HHHHHHHcCCCEEEEcCCC------------CCHHHHHHHHHHHHHHHH-HcCCEEEEecCc
Confidence 34777777654322 3445556777777775321 112244555555555443 335665544321
Q ss_pred --CCCC-------CccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeC
Q 020423 204 --GVDD-------HDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNG 274 (326)
Q Consensus 204 --g~~~-------~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~G 274 (326)
|.++ ..+.++..+ .. +.|+|+|-+.-++. ++-+.. ..+..+++.++++.+...++|+++-|
T Consensus 140 i~g~ed~~~g~s~~t~peea~~----f~-~tgvD~LAv~iG~v-HG~y~t----~~k~l~~e~L~~i~~~~~~iPlVlhG 209 (293)
T PRK07315 140 IGGEEDGIIGKGELAPIEDAKA----MV-ETGIDFLAAGIGNI-HGPYPE----NWEGLDLDHLEKLTEAVPGFPIVLHG 209 (293)
T ss_pred ccCcCccccCccCCCCHHHHHH----HH-HcCCCEEeeccccc-cccCCC----CCCcCCHHHHHHHHHhccCCCEEEEC
Confidence 1111 124444433 22 57999998874432 110100 01346789999988775469999999
Q ss_pred C--CCCHHHHHHHHHhCCChhhhhHHHHhCC
Q 020423 275 G--INTVDEVNAALRKGAHHVMVGRAAYQNP 303 (326)
Q Consensus 275 g--I~s~~da~~~l~~GaD~V~iGRall~dP 303 (326)
| | +.+++.++++.|++.|-+++.+..++
T Consensus 210 GSGi-~~e~~~~~i~~Gi~KiNv~T~i~~~~ 239 (293)
T PRK07315 210 GSGI-PDDQIQEAIKLGVAKVNVNTECQIAF 239 (293)
T ss_pred CCCC-CHHHHHHHHHcCCCEEEEccHHHHHH
Confidence 9 7 67889999999999999999998743
|
|
| >TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.047 Score=50.99 Aligned_cols=172 Identities=8% Similarity=0.056 Sum_probs=102.3
Q ss_pred CCCCCcEEEEe---cCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC-CCc
Q 020423 121 SPEQHPIVLQI---GGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVP 196 (326)
Q Consensus 121 ~~~~~piivQL---~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~-~~p 196 (326)
...+.|+++-+ +|..++ ..+.+++..++|+.+|.|.=... .+|.+++++.-+-..+...+-|++++++. +.+
T Consensus 74 ~~~~lPv~aD~dtGyG~~~~-v~r~V~~~~~aGaagi~IEDq~~---pK~cg~~~~k~lv~~ee~~~kI~Aa~~A~~~~d 149 (294)
T TIGR02319 74 LAVDVPVIMDADAGYGNAMS-VWRATREFERVGIVGYHLEDQVN---PKRCGHLEGKRLISTEEMTGKIEAAVEAREDED 149 (294)
T ss_pred hccCCCEEEECCCCCCCcHH-HHHHHHHHHHcCCeEEEEECCCC---ccccCCCCCccccCHHHHHHHHHHHHHhccCCC
Confidence 34567888887 344445 67889999999999999953321 23455555543333444444444444432 344
Q ss_pred EEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceE---EEe
Q 020423 197 VSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTF---TLN 273 (326)
Q Consensus 197 v~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPV---Ia~ 273 (326)
+.+=-|........+++.++.. +.+.++|+|.|-+++-. ..+.+.++.++. +.|+ +..
T Consensus 150 ~~I~ARTDa~~~~g~deaI~Ra-~aY~eAGAD~ifi~~~~-----------------~~~ei~~~~~~~-~~P~~~nv~~ 210 (294)
T TIGR02319 150 FTIIARTDARESFGLDEAIRRS-REYVAAGADCIFLEAML-----------------DVEEMKRVRDEI-DAPLLANMVE 210 (294)
T ss_pred eEEEEEecccccCCHHHHHHHH-HHHHHhCCCEEEecCCC-----------------CHHHHHHHHHhc-CCCeeEEEEe
Confidence 5554454332223466766653 45567999999987522 145566676664 6676 444
Q ss_pred CCCCCHHHHHHHHHhCCChhhhhHHHHhCCchhHHhHHHhhh
Q 020423 274 GGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIY 315 (326)
Q Consensus 274 GgI~s~~da~~~l~~GaD~V~iGRall~dP~l~~~~i~~~~~ 315 (326)
|+-...-.+.++.+.|++.|..+..++..-....+..-..+.
T Consensus 211 ~~~~p~~s~~eL~~lG~~~v~~~~~~~~aa~~a~~~~~~~l~ 252 (294)
T TIGR02319 211 GGKTPWLTTKELESIGYNLAIYPLSGWMAAASVLRKLFTELR 252 (294)
T ss_pred cCCCCCCCHHHHHHcCCcEEEEcHHHHHHHHHHHHHHHHHHH
Confidence 543333456777788999999997776543333344444444
|
This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization. |
| >PRK06801 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.01 Score=55.23 Aligned_cols=151 Identities=17% Similarity=0.216 Sum_probs=92.6
Q ss_pred CCCcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEec
Q 020423 123 EQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCR 202 (326)
Q Consensus 123 ~~~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r 202 (326)
..-|++++|-|... .+.++++.+.||+.|.+-.+ . -.++.+.+..+++++..+. .+.+|-.-+.
T Consensus 73 ~~vpV~lHlDH~~~---~e~i~~Ai~~GftSVm~D~S-~-----------l~~eeNi~~t~~v~~~a~~-~gv~VE~ElG 136 (286)
T PRK06801 73 HDIPVVLNLDHGLH---FEAVVRALRLGFSSVMFDGS-T-----------LEYEENVRQTREVVKMCHA-VGVSVEAELG 136 (286)
T ss_pred CCCCEEEECCCCCC---HHHHHHHHHhCCcEEEEcCC-C-----------CCHHHHHHHHHHHHHHHHH-cCCeEEeecC
Confidence 35577777755432 23455667788888888432 1 1223556677777766644 2444433222
Q ss_pred -cCCCC------------CccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCce
Q 020423 203 -IGVDD------------HDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLT 269 (326)
Q Consensus 203 -~g~~~------------~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iP 269 (326)
+|..+ ..+.++. .+..++.|+|++-++-++.. |.- ...+..+++.+.++.+.. ++|
T Consensus 137 ~vgg~e~~v~~~~~~~~~~T~pe~a----~~f~~~tgvD~LAvaiGt~H--g~y----~~~~~l~~e~l~~i~~~~-~~P 205 (286)
T PRK06801 137 AVGGDEGGALYGEADSAKFTDPQLA----RDFVDRTGIDALAVAIGNAH--GKY----KGEPKLDFARLAAIHQQT-GLP 205 (286)
T ss_pred cccCCCCCcccCCcccccCCCHHHH----HHHHHHHCcCEEEeccCCCC--CCC----CCCCCCCHHHHHHHHHhc-CCC
Confidence 11111 1123333 33445689999999654431 110 112346789998887664 899
Q ss_pred EEEeCC--CCCHHHHHHHHHhCCChhhhhHHHHh
Q 020423 270 FTLNGG--INTVDEVNAALRKGAHHVMVGRAAYQ 301 (326)
Q Consensus 270 VIa~Gg--I~s~~da~~~l~~GaD~V~iGRall~ 301 (326)
++.-|| | +.+++.++++.|++.|-+++.+..
T Consensus 206 LVlHGGSgi-~~e~~~~~i~~Gi~KINv~T~~~~ 238 (286)
T PRK06801 206 LVLHGGSGI-SDADFRRAIELGIHKINFYTGMSQ 238 (286)
T ss_pred EEEECCCCC-CHHHHHHHHHcCCcEEEehhHHHH
Confidence 999999 7 367899999999999999998854
|
|
| >PRK06512 thiamine-phosphate pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0021 Score=57.62 Aligned_cols=73 Identities=12% Similarity=0.096 Sum_probs=54.2
Q ss_pred hhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhC
Q 020423 223 SLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN 302 (326)
Q Consensus 223 e~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~d 302 (326)
++.|+||+.+..-.. . ... ..+|...+.+..+.+. .++||++-||| +++++.++++.||++|.+-++++..
T Consensus 128 ~~~gaDYv~~Gpv~t--~-tK~----~~~p~gl~~l~~~~~~-~~iPvvAIGGI-~~~n~~~~~~~GA~giAvisai~~~ 198 (221)
T PRK06512 128 GELRPDYLFFGKLGA--D-NKP----EAHPRNLSLAEWWAEM-IEIPCIVQAGS-DLASAVEVAETGAEFVALERAVFDA 198 (221)
T ss_pred hhcCCCEEEECCCCC--C-CCC----CCCCCChHHHHHHHHh-CCCCEEEEeCC-CHHHHHHHHHhCCCEEEEhHHhhCC
Confidence 358999999865321 1 011 1233345666566555 48999999999 9999999999999999999999976
Q ss_pred Cc
Q 020423 303 PW 304 (326)
Q Consensus 303 P~ 304 (326)
++
T Consensus 199 ~d 200 (221)
T PRK06512 199 HD 200 (221)
T ss_pred CC
Confidence 66
|
|
| >TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0037 Score=62.24 Aligned_cols=64 Identities=17% Similarity=0.140 Sum_probs=48.6
Q ss_pred HHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhh
Q 020423 220 KVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVG 296 (326)
Q Consensus 220 ~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iG 296 (326)
+.+.++|+|.|.+.... |. +....+.++++++.++++|||+ |.+.|.+.+.++++.|||+|-||
T Consensus 231 ~~Lv~aGVd~i~~D~a~----g~--------~~~~~~~i~~i~~~~~~~~vi~-g~~~t~~~~~~l~~~G~d~i~vg 294 (475)
T TIGR01303 231 KALLDAGVDVLVIDTAH----GH--------QVKMISAIKAVRALDLGVPIVA-GNVVSAEGVRDLLEAGANIIKVG 294 (475)
T ss_pred HHHHHhCCCEEEEeCCC----CC--------cHHHHHHHHHHHHHCCCCeEEE-eccCCHHHHHHHHHhCCCEEEEC
Confidence 34456899999986543 11 1122567788888888999998 87999999999999999998643
|
This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302. |
| >cd03329 MR_like_4 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 4 | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.012 Score=56.86 Aligned_cols=124 Identities=10% Similarity=-0.017 Sum_probs=78.9
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCC--CcEEEEeccCCCCCccHH
Q 020423 135 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTN--VPVSVKCRIGVDDHDSYN 212 (326)
Q Consensus 135 ~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~--~pv~vK~r~g~~~~~~~~ 212 (326)
+++++.+.++++++.||+.+.+..+-+ ..++.-.+.++++|+.+| +++.+-...+| +.+
T Consensus 143 ~~~~~~~~a~~~~~~Gf~~~Kik~~~~---------------~~~~~di~~i~~vR~~~G~~~~l~vDan~~~----~~~ 203 (368)
T cd03329 143 SPEAYADFAEECKALGYRAIKLHPWGP---------------GVVRRDLKACLAVREAVGPDMRLMHDGAHWY----SRA 203 (368)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCc---------------hhHHHHHHHHHHHHHHhCCCCeEEEECCCCc----CHH
Confidence 789999999999999999999963211 114556789999999885 44555443333 344
Q ss_pred HHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCC-HHHHHHHHHhC-C
Q 020423 213 QLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT-VDEVNAALRKG-A 290 (326)
Q Consensus 213 e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s-~~da~~~l~~G-a 290 (326)
+..+ +++.+++.++.++. . ..++.+++.+++++++ .++||.+.-.+.+ ++++.++++.+ +
T Consensus 204 ~A~~-~~~~l~~~~l~~iE----e------------P~~~~d~~~~~~l~~~-~~ipIa~~E~~~~~~~~~~~~i~~~a~ 265 (368)
T cd03329 204 DALR-LGRALEELGFFWYE----D------------PLREASISSYRWLAEK-LDIPILGTEHSRGALESRADWVLAGAT 265 (368)
T ss_pred HHHH-HHHHhhhcCCCeEe----C------------CCCchhHHHHHHHHhc-CCCCEEccCcccCcHHHHHHHHHhCCC
Confidence 5555 34556777877774 0 1122234555565554 3677766666777 77777777754 6
Q ss_pred Chhhh
Q 020423 291 HHVMV 295 (326)
Q Consensus 291 D~V~i 295 (326)
|.|++
T Consensus 266 d~v~~ 270 (368)
T cd03329 266 DFLRA 270 (368)
T ss_pred CEEec
Confidence 65544
|
Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown. |
| >PRK07807 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0059 Score=60.88 Aligned_cols=63 Identities=14% Similarity=0.140 Sum_probs=47.5
Q ss_pred HHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhh
Q 020423 220 KVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMV 295 (326)
Q Consensus 220 ~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~i 295 (326)
+.+.+.|+|.|.+..... ++ ....+.++++++++++++|| .|.|.|.+.+.++++.|||+|-+
T Consensus 233 ~~Lv~aGvd~i~~D~a~~----~~--------~~~~~~i~~ik~~~p~~~v~-agnv~t~~~a~~l~~aGad~v~v 295 (479)
T PRK07807 233 RALLEAGVDVLVVDTAHG----HQ--------EKMLEALRAVRALDPGVPIV-AGNVVTAEGTRDLVEAGADIVKV 295 (479)
T ss_pred HHHHHhCCCEEEEeccCC----cc--------HHHHHHHHHHHHHCCCCeEE-eeccCCHHHHHHHHHcCCCEEEE
Confidence 344568999999875432 11 12267788898888887755 68999999999999999999763
|
|
| >PRK08091 ribulose-phosphate 3-epimerase; Validated | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.036 Score=49.80 Aligned_cols=144 Identities=10% Similarity=0.023 Sum_probs=90.5
Q ss_pred CCcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEecc
Q 020423 124 QHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRI 203 (326)
Q Consensus 124 ~~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~ 203 (326)
+.|+=+.|+..+|+.|. +...++|+|.|-+|.-+. ..+.++++.+|+. |.++-+.+.+
T Consensus 68 ~~~~DvHLMv~~P~~~i---~~~~~aGad~It~H~Ea~------------------~~~~~~l~~Ik~~-g~~~kaGlal 125 (228)
T PRK08091 68 HCFKDVHLMVRDQFEVA---KACVAAGADIVTLQVEQT------------------HDLALTIEWLAKQ-KTTVLIGLCL 125 (228)
T ss_pred CCCEEEEeccCCHHHHH---HHHHHhCCCEEEEcccCc------------------ccHHHHHHHHHHC-CCCceEEEEE
Confidence 67888999999998876 456778999999997421 1134567777664 5533333333
Q ss_pred CCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHH---hc-CCCceEEEeCCCCCH
Q 020423 204 GVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALL---RD-FPDLTFTLNGGINTV 279 (326)
Q Consensus 204 g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~---~~-~~~iPVIa~GgI~s~ 279 (326)
+... .++.+. .++. -+|.|.+-+-++..+|- ..-+..++.+++++ ++ ..++.|-.-||| +.
T Consensus 126 nP~T--p~~~i~----~~l~--~vD~VLiMtV~PGfgGQ------~f~~~~l~KI~~lr~~~~~~~~~~~IeVDGGI-~~ 190 (228)
T PRK08091 126 CPET--PISLLE----PYLD--QIDLIQILTLDPRTGTK------APSDLILDRVIQVENRLGNRRVEKLISIDGSM-TL 190 (228)
T ss_pred CCCC--CHHHHH----HHHh--hcCEEEEEEECCCCCCc------cccHHHHHHHHHHHHHHHhcCCCceEEEECCC-CH
Confidence 3222 233322 2333 37888776544422221 11122344444433 23 225668888999 58
Q ss_pred HHHHHHHHhCCChhhhhHHHHhCCc
Q 020423 280 DEVNAALRKGAHHVMVGRAAYQNPW 304 (326)
Q Consensus 280 ~da~~~l~~GaD~V~iGRall~dP~ 304 (326)
+.+.++.+.|||.+.+|+++..+++
T Consensus 191 ~ti~~l~~aGaD~~V~GSalF~~~d 215 (228)
T PRK08091 191 ELASYLKQHQIDWVVSGSALFSQGE 215 (228)
T ss_pred HHHHHHHHCCCCEEEEChhhhCCCC
Confidence 8999999999999999999987777
|
|
| >PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0084 Score=52.84 Aligned_cols=150 Identities=13% Similarity=0.133 Sum_probs=88.5
Q ss_pred CcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCccc----C----CCCccccccCCHHHHHHHHHHHHhcCCCc
Q 020423 125 HPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVA----G----HGCFGVSLMLDPKFVGEAMSVIAANTNVP 196 (326)
Q Consensus 125 ~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~----r----~d~yGgsl~~r~~~l~eiv~avr~~~~~p 196 (326)
.+++.=+.+.++++..+.++.+.+.|+..|||.+..|..... + .=..|..-.-+++.+.+.+++ |-.
T Consensus 4 ~~vv~Vir~~~~~~a~~ia~al~~gGi~~iEit~~tp~a~~~I~~l~~~~~~~~vGAGTVl~~e~a~~ai~a-----GA~ 78 (201)
T PRK06015 4 QPVIPVLLIDDVEHAVPLARALAAGGLPAIEITLRTPAALDAIRAVAAEVEEAIVGAGTILNAKQFEDAAKA-----GSR 78 (201)
T ss_pred CCEEEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCCccHHHHHHHHHHHCCCCEEeeEeCcCHHHHHHHHHc-----CCC
Confidence 456666778899999999999999999999998876542100 0 000111111223333222221 222
Q ss_pred EEEEeccCCCC----------------CccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHH
Q 020423 197 VSVKCRIGVDD----------------HDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYA 260 (326)
Q Consensus 197 v~vK~r~g~~~----------------~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~ 260 (326)
+.| +++++. ..+..|+.. .+ ++|+|.+-+-.... .+ ...+++.
T Consensus 79 Fiv--SP~~~~~vi~~a~~~~i~~iPG~~TptEi~~----A~-~~Ga~~vK~FPa~~-~G-------------G~~yika 137 (201)
T PRK06015 79 FIV--SPGTTQELLAAANDSDVPLLPGAATPSEVMA----LR-EEGYTVLKFFPAEQ-AG-------------GAAFLKA 137 (201)
T ss_pred EEE--CCCCCHHHHHHHHHcCCCEeCCCCCHHHHHH----HH-HCCCCEEEECCchh-hC-------------CHHHHHH
Confidence 222 222211 112333222 22 47777777654221 00 1456777
Q ss_pred HHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHh
Q 020423 261 LLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 301 (326)
Q Consensus 261 i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~ 301 (326)
+..-++++|++.+||| +.+.+.+.++.|+..+..|+.+..
T Consensus 138 l~~plp~~~l~ptGGV-~~~n~~~~l~ag~~~~~ggs~l~~ 177 (201)
T PRK06015 138 LSSPLAGTFFCPTGGI-SLKNARDYLSLPNVVCVGGSWVAP 177 (201)
T ss_pred HHhhCCCCcEEecCCC-CHHHHHHHHhCCCeEEEEchhhCC
Confidence 7777789999999999 678999999988777777777653
|
|
| >PRK06852 aldolase; Validated | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.062 Score=50.33 Aligned_cols=166 Identities=12% Similarity=0.110 Sum_probs=93.2
Q ss_pred CCcEEEEecCC---------CHH-HHHHHHHHHHHCC------CCEEEecCCCCCCcccCCCCccccccCCHHHHHH---
Q 020423 124 QHPIVLQIGGS---------NLD-NLAKATELANAYN------YDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGE--- 184 (326)
Q Consensus 124 ~~piivQL~g~---------~~~-~f~~aA~~a~~aG------~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~e--- 184 (326)
+.|+++.|.+. ++. ......+.|.+.| +|+|-+|. + +|+..+ .+.+.+
T Consensus 92 ~~~lIlkl~~~t~l~~~~~~~p~~~l~~sVeeAvrlG~~~~~~AdAV~v~v-----~------~Gs~~E--~~ml~~l~~ 158 (304)
T PRK06852 92 DVPYLVKLNSKTNLVKTSQRDPLSRQLLDVEQVVEFKENSGLNILGVGYTI-----Y------LGSEYE--SEMLSEAAQ 158 (304)
T ss_pred CCcEEEEECCCCCcCCcccCCccccceecHHHHHhcCCccCCCceEEEEEE-----e------cCCHHH--HHHHHHHHH
Confidence 45677777652 121 1222244566666 88888864 1 232222 233333
Q ss_pred HHHHHHhcCCCcEEEEe-ccCC--CCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHH
Q 020423 185 AMSVIAANTNVPVSVKC-RIGV--DDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYAL 261 (326)
Q Consensus 185 iv~avr~~~~~pv~vK~-r~g~--~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i 261 (326)
+.++. +..|+|+.+-+ ..|. .+..+. +++...+++..+.|+|.|-+--.+. .+ ....+.+.++
T Consensus 159 v~~ea-~~~GlPll~~~yprG~~i~~~~~~-~~ia~aaRiaaELGADIVKv~y~~~--~~----------~g~~e~f~~v 224 (304)
T PRK06852 159 IIYEA-HKHGLIAVLWIYPRGKAVKDEKDP-HLIAGAAGVAACLGADFVKVNYPKK--EG----------ANPAELFKEA 224 (304)
T ss_pred HHHHH-HHhCCcEEEEeeccCcccCCCccH-HHHHHHHHHHHHHcCCEEEecCCCc--CC----------CCCHHHHHHH
Confidence 33332 34589987632 2221 222222 4555667787889999997642110 00 0123555666
Q ss_pred HhcCCCceEEEeCCCCC-HH----HHHHHHH-hCCChhhhhHHHHhCCc----hhHHhHHHhhhC
Q 020423 262 LRDFPDLTFTLNGGINT-VD----EVNAALR-KGAHHVMVGRAAYQNPW----YTLGHVDTAIYG 316 (326)
Q Consensus 262 ~~~~~~iPVIa~GgI~s-~~----da~~~l~-~GaD~V~iGRall~dP~----l~~~~i~~~~~~ 316 (326)
.+....+||+..||=.. .+ .+.++++ .||.+|.+||=..+.|+ -+.+.+....|+
T Consensus 225 v~~~g~vpVviaGG~k~~~~e~L~~v~~ai~~aGa~Gv~~GRNIfQ~~~p~~~~~~~Ai~~IVH~ 289 (304)
T PRK06852 225 VLAAGRTKVVCAGGSSTDPEEFLKQLYEQIHISGASGNATGRNIHQKPLDEAVRMCNAIYAITVE 289 (304)
T ss_pred HHhCCCCcEEEeCCCCCCHHHHHHHHHHHHHHcCCceeeechhhhcCCCchHHHHHHHHHHHHhC
Confidence 66544799999998763 33 3445556 79999999999998754 244555555554
|
|
| >PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2 | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0014 Score=56.73 Aligned_cols=69 Identities=19% Similarity=0.151 Sum_probs=49.8
Q ss_pred hhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHH
Q 020423 223 SLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAA 299 (326)
Q Consensus 223 e~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRal 299 (326)
.+.|+|++.++.-..... .+..++..++.+.++.+.. ++||++-||| +++++.++.+.|+++|.+-+++
T Consensus 112 ~~~g~dYv~~gpvf~T~s------k~~~~~~g~~~l~~~~~~~-~~pv~AlGGI-~~~~i~~l~~~Ga~gvAvi~aI 180 (180)
T PF02581_consen 112 EELGADYVFLGPVFPTSS------KPGAPPLGLDGLREIARAS-PIPVYALGGI-TPENIPELREAGADGVAVISAI 180 (180)
T ss_dssp HHCTTSEEEEETSS--SS------SSS-TTCHHHHHHHHHHHT-SSCEEEESS---TTTHHHHHHTT-SEEEESHHH
T ss_pred hhcCCCEEEECCccCCCC------CccccccCHHHHHHHHHhC-CCCEEEEcCC-CHHHHHHHHHcCCCEEEEEeeC
Confidence 468999999986432111 0112556688888887775 7999999999 7999999999999999998874
|
5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D .... |
| >PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4 | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0049 Score=54.11 Aligned_cols=48 Identities=33% Similarity=0.474 Sum_probs=38.7
Q ss_pred HHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhCC
Q 020423 255 YEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNP 303 (326)
Q Consensus 255 ~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~dP 303 (326)
..+++.+..-+++++++.+||| +++.+.+.++.|+.+|.+|+.+..+.
T Consensus 136 ~~~ik~l~~p~p~~~~~ptGGV-~~~N~~~~l~ag~~~vg~Gs~L~~~~ 183 (196)
T PF01081_consen 136 PSYIKALRGPFPDLPFMPTGGV-NPDNLAEYLKAGAVAVGGGSWLFPKD 183 (196)
T ss_dssp HHHHHHHHTTTTT-EEEEBSS---TTTHHHHHTSTTBSEEEESGGGSHH
T ss_pred HHHHHHHhccCCCCeEEEcCCC-CHHHHHHHHhCCCEEEEECchhcCHH
Confidence 5678888777789999999999 46899999999999999999876544
|
1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A .... |
| >PF01680 SOR_SNZ: SOR/SNZ family; InterPro: IPR001852 Snz1p is a highly conserved protein involved in growth arrest in Saccharomyces cerevisiae (Baker's yeast) [] | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0053 Score=52.37 Aligned_cols=77 Identities=22% Similarity=0.293 Sum_probs=49.9
Q ss_pred HHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHH
Q 020423 140 AKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIY 219 (326)
Q Consensus 140 ~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia 219 (326)
.+.|+.++++|+-.|-.----|.+ .|..+ |-+-+.+|..+.||.++| .+|+..|.|+|. + .+ +
T Consensus 24 ~eQAkIAE~AGA~AVMaLervPad--iR~~G-GVaRMsDP~~I~eI~~aV----sIPVMAK~RIGH-----f---vE--A 86 (208)
T PF01680_consen 24 AEQAKIAEEAGAVAVMALERVPAD--IRAAG-GVARMSDPKMIKEIMDAV----SIPVMAKVRIGH-----F---VE--A 86 (208)
T ss_dssp HHHHHHHHHHT-SEEEE-SS-HHH--HHHTT-S---S--HHHHHHHHHH-----SSEEEEEEETT------H---HH--H
T ss_pred HHHHHHHHHhCCeEEEEeccCCHh--HHhcC-CccccCCHHHHHHHHHhe----Eeceeeccccce-----e---eh--h
Confidence 356889999998888765444542 34444 677888999888887765 799999999983 1 22 6
Q ss_pred HHhhhCCccEEEEe
Q 020423 220 KVSSLSPTRHFIIH 233 (326)
Q Consensus 220 ~~le~~Gvd~I~v~ 233 (326)
++|+..|+|+|+=|
T Consensus 87 qiLealgVD~IDES 100 (208)
T PF01680_consen 87 QILEALGVDYIDES 100 (208)
T ss_dssp HHHHHTT-SEEEEE
T ss_pred hhHHHhCCceeccc
Confidence 78899999999865
|
Sor1 (singlet oxygen resistance) is essential in pyridoxine (vitamin B6) synthesis in Cercospora nicotianae and Aspergillus flavus. Pyridoxine quenches singlet oxygen at a rate comparable to that of vitamins C and E, two of the most highly efficient biological antioxidants, suggesting a previously unknown role for pyridoxine in active oxygen resistance [].; GO: 0042823 pyridoxal phosphate biosynthetic process; PDB: 2ISS_A 1ZNN_B 2ZBT_B 2NV2_I 2NV1_C 4ADS_C 4ADU_B 4ADT_B 3FEM_F 3O07_A .... |
| >PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.0055 Score=56.61 Aligned_cols=92 Identities=15% Similarity=0.279 Sum_probs=60.5
Q ss_pred HHHHHHHHHhcCC--CcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHH
Q 020423 182 VGEAMSVIAANTN--VPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYY 259 (326)
Q Consensus 182 l~eiv~avr~~~~--~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~ 259 (326)
+.+.++.+|+..+ .++.| +.++.+|..+ .+ ++|+|.|-+..- +.+.++
T Consensus 168 i~~~v~~~k~~~p~~~~I~V-------Ev~tleea~~----A~-~~GaDiI~LDn~------------------~~e~l~ 217 (273)
T PRK05848 168 LKEFIQHARKNIPFTAKIEI-------ECESLEEAKN----AM-NAGADIVMCDNM------------------SVEEIK 217 (273)
T ss_pred HHHHHHHHHHhCCCCceEEE-------EeCCHHHHHH----HH-HcCCCEEEECCC------------------CHHHHH
Confidence 3456666666553 33443 2234555433 23 589999876431 133344
Q ss_pred HHHhc----CCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhCCc
Q 020423 260 ALLRD----FPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW 304 (326)
Q Consensus 260 ~i~~~----~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~dP~ 304 (326)
+.++. .+++.+.++||| +++.+.++.+.|+|.|.+|.....-|+
T Consensus 218 ~~v~~~~~~~~~~~ieAsGgI-t~~ni~~ya~~GvD~IsvG~l~~sa~~ 265 (273)
T PRK05848 218 EVVAYRNANYPHVLLEASGNI-TLENINAYAKSGVDAISSGSLIHQATW 265 (273)
T ss_pred HHHHHhhccCCCeEEEEECCC-CHHHHHHHHHcCCCEEEeChhhcCCCc
Confidence 33332 357789999999 999999999999999999998764444
|
|
| >PRK09722 allulose-6-phosphate 3-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.042 Score=49.47 Aligned_cols=153 Identities=13% Similarity=0.133 Sum_probs=91.4
Q ss_pred cEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCC
Q 020423 126 PIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGV 205 (326)
Q Consensus 126 piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~ 205 (326)
.+..+|...+...+.+..+.+.+ |+|.+-+-.-- |.+..+..|=-++++++|+.++.|+.|-+=..
T Consensus 4 ~I~pSil~ad~~~l~~el~~l~~-g~d~lH~DiMD------------G~FVPN~tfg~~~i~~ir~~t~~~~DvHLMv~- 69 (229)
T PRK09722 4 KISPSLMCMDLLKFKEQIEFLNS-KADYFHIDIMD------------GHFVPNLTLSPFFVSQVKKLASKPLDVHLMVT- 69 (229)
T ss_pred eEEeehhhcCHHHHHHHHHHHHh-CCCEEEEeccc------------CccCCCcccCHHHHHHHHhcCCCCeEEEEEec-
Confidence 36778888898899999999988 88887664321 11112222224567778877788877765442
Q ss_pred CCCccHHHHHHHHHHHhhhCCccEEEEecCCc--c----------cC---------------------------------
Q 020423 206 DDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKA--L----------LN--------------------------------- 240 (326)
Q Consensus 206 ~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~--~----------~~--------------------------------- 240 (326)
+ .+.. +. .+.++|+|.|++|--.. . .+
T Consensus 70 -~---P~~~---i~-~~~~aGad~it~H~Ea~~~~~~~~i~~Ik~~G~kaGlalnP~T~~~~l~~~l~~vD~VLvMsV~P 141 (229)
T PRK09722 70 -D---PQDY---ID-QLADAGADFITLHPETINGQAFRLIDEIRRAGMKVGLVLNPETPVESIKYYIHLLDKITVMTVDP 141 (229)
T ss_pred -C---HHHH---HH-HHHHcCCCEEEECccCCcchHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHhcCEEEEEEEcC
Confidence 2 2222 22 23357888888875411 0 00
Q ss_pred CCCcCCcCCCCCccHHHHHHHHh---cC-CCceEEEeCCCCCHHHHHHHHHhCCChhhhhHH-HHh-CCc
Q 020423 241 GISPAENRTIPPLKYEYYYALLR---DF-PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRA-AYQ-NPW 304 (326)
Q Consensus 241 g~~~~~~~~~~~~~~~~i~~i~~---~~-~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRa-ll~-dP~ 304 (326)
|.++. ..-+..++.++++++ +. .++.|-.-|||+ .+.+.++.+.|||.+.+|+. +.. +++
T Consensus 142 Gf~GQ---~fi~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~-~~~i~~~~~aGad~~V~Gss~iF~~~~d 207 (229)
T PRK09722 142 GFAGQ---PFIPEMLDKIAELKALRERNGLEYLIEVDGSCN-QKTYEKLMEAGADVFIVGTSGLFNLDED 207 (229)
T ss_pred CCcch---hccHHHHHHHHHHHHHHHhcCCCeEEEEECCCC-HHHHHHHHHcCCCEEEEChHHHcCCCCC
Confidence 11110 111111333443332 22 256688889995 88999999999999999976 665 344
|
|
| >PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.031 Score=55.34 Aligned_cols=157 Identities=18% Similarity=0.142 Sum_probs=88.9
Q ss_pred HHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEecc------------CCCC
Q 020423 140 AKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRI------------GVDD 207 (326)
Q Consensus 140 ~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~------------g~~~ 207 (326)
.+.|+.. +.|+++|-+.. ....|+|+++ -+..+|+.+..|+..|==+ |.+-
T Consensus 73 ~~~a~~y-~~gA~aiSVlT--------e~~~F~Gs~~--------~l~~vr~~v~~PvLrKDFiid~~QI~ea~~~GADa 135 (454)
T PRK09427 73 AEIARVY-KHYASAISVLT--------DEKYFQGSFD--------FLPIVRAIVTQPILCKDFIIDPYQIYLARYYGADA 135 (454)
T ss_pred HHHHHHH-HcCCeEEEEec--------CcCcCCCCHH--------HHHHHHHhCCCCEEeccccCCHHHHHHHHHcCCCc
Confidence 4455555 67788888853 2345787753 3556677788898777110 1111
Q ss_pred Cc------cHHHHHHHHHHHhhhCCccEE-EEecCCccc----CC--CCcCCcCCCCC--ccHHHHHHHHhcCC-CceEE
Q 020423 208 HD------SYNQLCDFIYKVSSLSPTRHF-IIHSRKALL----NG--ISPAENRTIPP--LKYEYYYALLRDFP-DLTFT 271 (326)
Q Consensus 208 ~~------~~~e~~~~ia~~le~~Gvd~I-~v~~~~~~~----~g--~~~~~~~~~~~--~~~~~i~~i~~~~~-~iPVI 271 (326)
.. +.+++.+ +.....+.|.+.+ .||...-.. .| .-+-.++...+ .+.+...++....+ ++.+|
T Consensus 136 vLLI~~~L~~~~l~~-l~~~a~~lGl~~lvEvh~~~El~~al~~~a~iiGiNnRdL~t~~vd~~~~~~l~~~ip~~~~~v 214 (454)
T PRK09427 136 ILLMLSVLDDEQYRQ-LAAVAHSLNMGVLTEVSNEEELERAIALGAKVIGINNRNLRDLSIDLNRTRELAPLIPADVIVI 214 (454)
T ss_pred hhHHHHhCCHHHHHH-HHHHHHHcCCcEEEEECCHHHHHHHHhCCCCEEEEeCCCCccceECHHHHHHHHhhCCCCcEEE
Confidence 00 1112222 2233445777665 456432100 00 00111122121 22333444444443 67889
Q ss_pred EeCCCCCHHHHHHHHHhCCChhhhhHHHHhCCchhHHhHHHhhhC
Q 020423 272 LNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYG 316 (326)
Q Consensus 272 a~GgI~s~~da~~~l~~GaD~V~iGRall~dP~l~~~~i~~~~~~ 316 (326)
+-+||.+++|+..+.. |+|+|.||.+++..|+ ..+.+.+.+.+
T Consensus 215 seSGI~t~~d~~~~~~-~~davLiG~~lm~~~d-~~~~~~~L~~~ 257 (454)
T PRK09427 215 SESGIYTHAQVRELSP-FANGFLIGSSLMAEDD-LELAVRKLILG 257 (454)
T ss_pred EeCCCCCHHHHHHHHh-cCCEEEECHHHcCCCC-HHHHHHHHhcc
Confidence 9999999999999754 7999999999999999 46666665443
|
|
| >TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.14 Score=47.61 Aligned_cols=173 Identities=11% Similarity=0.126 Sum_probs=100.0
Q ss_pred CCCCcEEEEec-CCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCcccc---ccCCHHHHHHHHHHHHhc-C--C
Q 020423 122 PEQHPIVLQIG-GSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVS---LMLDPKFVGEAMSVIAAN-T--N 194 (326)
Q Consensus 122 ~~~~piivQL~-g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgs---l~~r~~~l~eiv~avr~~-~--~ 194 (326)
....|+++-.- |.++..+.+.++++.++|+.+|.|-=.. ..+|.+.+|+. ..-..+...+.+++++++ . +
T Consensus 76 a~~~Pv~~D~d~Gg~~~~v~r~V~~l~~aGvaGi~iEDq~---~pk~cg~~~~~~~~~l~s~ee~~~kI~Aa~~a~~~~~ 152 (285)
T TIGR02320 76 VTTKPIILDGDTGGNFEHFRRLVRKLERRGVSAVCIEDKL---GLKKNSLFGNDVAQPQASVEEFCGKIRAGKDAQTTED 152 (285)
T ss_pred hcCCCEEEecCCCCCHHHHHHHHHHHHHcCCeEEEEeccC---CCccccccCCCCcccccCHHHHHHHHHHHHHhccCCC
Confidence 45678877763 4588899999999999999999994221 11233444543 223455555556666554 3 3
Q ss_pred CcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHh----cCCCceE
Q 020423 195 VPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLR----DFPDLTF 270 (326)
Q Consensus 195 ~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~----~~~~iPV 270 (326)
++|..+.-.-+.. ..+++.++. ++.+.++|+|.|-+.+... ..+.+.++.+ .++++|+
T Consensus 153 ~~IiARTDa~~~~-~~~~eAi~R-a~ay~eAGAD~ifv~~~~~----------------~~~ei~~~~~~~~~~~p~~pl 214 (285)
T TIGR02320 153 FMIIARVESLILG-KGMEDALKR-AEAYAEAGADGIMIHSRKK----------------DPDEILEFARRFRNHYPRTPL 214 (285)
T ss_pred eEEEEeccccccc-CCHHHHHHH-HHHHHHcCCCEEEecCCCC----------------CHHHHHHHHHHhhhhCCCCCE
Confidence 4555552221111 236666664 4566789999999874211 1222333333 3346798
Q ss_pred EEeCCCCCHHHHHHHHHhCCChhhhhHHHHhCCchhHHhHHHhhh
Q 020423 271 TLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIY 315 (326)
Q Consensus 271 Ia~GgI~s~~da~~~l~~GaD~V~iGRall~dP~l~~~~i~~~~~ 315 (326)
+.+.+-...-.+.++-+.|++.|..|..++..-.-..+++...+.
T Consensus 215 ~~~~~~~~~~~~~eL~~lG~~~v~~~~~~~~aa~~a~~~~~~~~~ 259 (285)
T TIGR02320 215 VIVPTSYYTTPTDEFRDAGISVVIYANHLLRAAYAAMQQVAERIL 259 (285)
T ss_pred EEecCCCCCCCHHHHHHcCCCEEEEhHHHHHHHHHHHHHHHHHHH
Confidence 876532222246777789999999996665433323344444443
|
A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model. |
| >PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.023 Score=54.23 Aligned_cols=148 Identities=14% Similarity=0.115 Sum_probs=78.8
Q ss_pred HHHHHHHCCCCEEEecCCCCCCcccCCCCcccccc-----CCHHHHHHHHHHHHhcCCCcEEEEe-c--cCCC--CC---
Q 020423 142 ATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLM-----LDPKFVGEAMSVIAANTNVPVSVKC-R--IGVD--DH--- 208 (326)
Q Consensus 142 aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~-----~r~~~l~eiv~avr~~~~~pv~vK~-r--~g~~--~~--- 208 (326)
.++++++.|+|+|-+++- ||..-. .+.+++.++.++.+ ..|+|+.+-+ . .+.. +.
T Consensus 111 sve~a~~~GAdAVk~lv~-----------~~~d~~~~~~~~~~~~l~rv~~ec~-~~giPlllE~l~y~~~~~~~~~~~~ 178 (340)
T PRK12858 111 SVRRIKEAGADAVKLLLY-----------YRPDEDDAINDRKHAFVERVGAECR-ANDIPFFLEPLTYDGKGSDKKAEEF 178 (340)
T ss_pred cHHHHHHcCCCEEEEEEE-----------eCCCcchHHHHHHHHHHHHHHHHHH-HcCCceEEEEeccCCCccccccccc
Confidence 357789999999999752 221100 12334555555543 3489988742 2 1211 11
Q ss_pred --ccHHHHHHHHHHHhh--hCCccEEEEecCCc--ccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEE-eCCCCCHHH
Q 020423 209 --DSYNQLCDFIYKVSS--LSPTRHFIIHSRKA--LLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTL-NGGINTVDE 281 (326)
Q Consensus 209 --~~~~e~~~~ia~~le--~~Gvd~I~v~~~~~--~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa-~GgI~s~~d 281 (326)
... +.+....+.+. +.|+|.+-+.-... .-.|....+.-+......+.++++.+.. .+|+|. +||+ +.++
T Consensus 179 a~~~p-~~V~~a~r~~~~~elGaDvlKve~p~~~~~veg~~~~~~~~~~~~~~~~f~~~~~a~-~~P~vvlsgG~-~~~~ 255 (340)
T PRK12858 179 AKVKP-EKVIKTMEEFSKPRYGVDVLKVEVPVDMKFVEGFDGFEEAYTQEEAFKLFREQSDAT-DLPFIFLSAGV-SPEL 255 (340)
T ss_pred cccCH-HHHHHHHHHHhhhccCCeEEEeeCCCCcccccccccccccccHHHHHHHHHHHHhhC-CCCEEEECCCC-CHHH
Confidence 112 23333455555 59999998752211 0011110000000000123455555554 788655 7887 6565
Q ss_pred HHHHH----HhCC--ChhhhhHHHHhCCc
Q 020423 282 VNAAL----RKGA--HHVMVGRAAYQNPW 304 (326)
Q Consensus 282 a~~~l----~~Ga--D~V~iGRall~dP~ 304 (326)
..+.+ +.|| .+|.+||+...++-
T Consensus 256 f~~~l~~A~~aGa~f~Gvl~GRniwq~~v 284 (340)
T PRK12858 256 FRRTLEFACEAGADFSGVLCGRATWQDGI 284 (340)
T ss_pred HHHHHHHHHHcCCCccchhhhHHHHhhhh
Confidence 55444 4789 99999999987643
|
|
| >PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.05 Score=48.42 Aligned_cols=38 Identities=16% Similarity=0.148 Sum_probs=31.7
Q ss_pred CCcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCC
Q 020423 124 QHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCP 161 (326)
Q Consensus 124 ~~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P 161 (326)
..+++.=+.+.++++..+.++.+.+.|++.||+.+..|
T Consensus 14 ~~~~iaV~r~~~~~~a~~i~~al~~~Gi~~iEitl~~~ 51 (212)
T PRK05718 14 AGPVVPVIVINKLEDAVPLAKALVAGGLPVLEVTLRTP 51 (212)
T ss_pred HCCEEEEEEcCCHHHHHHHHHHHHHcCCCEEEEecCCc
Confidence 45566667789999999999999999999999975433
|
|
| >TIGR00734 hisAF_rel hisA/hisF family protein | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.0027 Score=56.97 Aligned_cols=76 Identities=13% Similarity=0.121 Sum_probs=58.9
Q ss_pred HHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHH--hCCChhhhh
Q 020423 219 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR--KGAHHVMVG 296 (326)
Q Consensus 219 a~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~--~GaD~V~iG 296 (326)
++.+.+.|+|.+|+-.-++.. + .+.+.+.+.++.+. +|+...|||+|.+++++++. .+||-|.+|
T Consensus 42 a~~~~~~g~~~l~ivDLd~~~-~---------~~~n~~~i~~i~~~---~~v~vgGGirs~e~~~~~~~~l~~a~rvvig 108 (221)
T TIGR00734 42 AKVIEEIGARFIYIADLDRIV-G---------LGDNFSLLSKLSKR---VELIADCGVRSPEDLETLPFTLEFASRVVVA 108 (221)
T ss_pred HHHHHHcCCCEEEEEEccccc-C---------CcchHHHHHHHHhh---CcEEEcCccCCHHHHHHHHhhhccceEEeec
Confidence 445567999999997654321 1 12357788888765 48999999999999999976 369999999
Q ss_pred HHHHhCCchhH
Q 020423 297 RAAYQNPWYTL 307 (326)
Q Consensus 297 Rall~dP~l~~ 307 (326)
+..+.||+++.
T Consensus 109 T~a~~~p~~l~ 119 (221)
T TIGR00734 109 TETLDITELLR 119 (221)
T ss_pred ChhhCCHHHHH
Confidence 99999999533
|
This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown. |
| >PRK09250 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.072 Score=50.56 Aligned_cols=168 Identities=14% Similarity=0.118 Sum_probs=91.6
Q ss_pred CCcEEEEecCCC--------HHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccC-CHHHHHHHHHHHHhcCC
Q 020423 124 QHPIVLQIGGSN--------LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLML-DPKFVGEAMSVIAANTN 194 (326)
Q Consensus 124 ~~piivQL~g~~--------~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~-r~~~l~eiv~avr~~~~ 194 (326)
+.|+++.|.+.. .+......+.|.+.|+|+|-++. + +|+..+. ..+.+.++.++. +..|
T Consensus 125 ~iplIlkln~~t~l~~~~~~~~~l~~sVedAlrLGAdAV~~tv-----y------~Gs~~E~~ml~~l~~i~~ea-~~~G 192 (348)
T PRK09250 125 KIPFILKLNHNELLSYPNTYDQALTASVEDALRLGAVAVGATI-----Y------FGSEESRRQIEEISEAFEEA-HELG 192 (348)
T ss_pred CCCEEEEeCCCCCCCCCCCCcccceecHHHHHHCCCCEEEEEE-----e------cCCHHHHHHHHHHHHHHHHH-HHhC
Confidence 467888876531 12233345668889999998874 1 2322211 112233333332 3458
Q ss_pred CcEEEEec-cCC--CCCc---cHHHHHHHHHHHhhhCCccEEEEecCCccc------CCCCc---CCcCCCCCccHHHHH
Q 020423 195 VPVSVKCR-IGV--DDHD---SYNQLCDFIYKVSSLSPTRHFIIHSRKALL------NGISP---AENRTIPPLKYEYYY 259 (326)
Q Consensus 195 ~pv~vK~r-~g~--~~~~---~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~------~g~~~---~~~~~~~~~~~~~i~ 259 (326)
.|+.+-+- .|. .+.. +-.+++...+++..+.|+|.|-+--.+... -|... .+...+. ...+.++
T Consensus 193 lPlv~~~YpRG~~i~~~~d~~~~~d~Ia~AaRiaaELGADIVKv~yp~~~~~f~~v~~~~~~~~~~~~~~~~-~~~~~~~ 271 (348)
T PRK09250 193 LATVLWSYLRNSAFKKDGDYHTAADLTGQANHLAATIGADIIKQKLPTNNGGYKAINFGKTDDRVYSKLTSD-HPIDLVR 271 (348)
T ss_pred CCEEEEecccCcccCCcccccccHHHHHHHHHHHHHHcCCEEEecCCCChhhHHHhhccccccccccccccc-chHHHHH
Confidence 99877322 221 1111 123566667778888999999875221000 00000 0000000 1133444
Q ss_pred HHHhcC--CCceEEEeCCCCC-HH----HHHHH---HHhCCChhhhhHHHHhCCc
Q 020423 260 ALLRDF--PDLTFTLNGGINT-VD----EVNAA---LRKGAHHVMVGRAAYQNPW 304 (326)
Q Consensus 260 ~i~~~~--~~iPVIa~GgI~s-~~----da~~~---l~~GaD~V~iGRall~dP~ 304 (326)
.+++.. ..+||+.+||=.. .+ .+.++ ++.|+.+|.+||=..+.|+
T Consensus 272 ~~V~ac~ag~vpVviAGG~k~~~~e~L~~v~~a~~~i~aGa~Gv~iGRNIfQ~~~ 326 (348)
T PRK09250 272 YQVANCYMGRRGLINSGGASKGEDDLLDAVRTAVINKRAGGMGLIIGRKAFQRPM 326 (348)
T ss_pred HHHHhhccCCceEEEeCCCCCCHHHHHHHHHHHHHhhhcCCcchhhchhhhcCCc
Confidence 455442 1689999999763 22 34566 7789999999999999876
|
|
| >COG4981 Enoyl reductase domain of yeast-type FAS1 [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.035 Score=55.07 Aligned_cols=208 Identities=18% Similarity=0.185 Sum_probs=106.8
Q ss_pred cCeecCCcEEEccCCCCC-hHHHHHHHHHcCCCcEEEecce-----eeccccccccchhhhhhcCCCCCcEEEEecCCCH
Q 020423 63 ARQYLPPWFSVAPMMDWT-DNHYRTLARLISKHAWLYTEML-----AAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSNL 136 (326)
Q Consensus 63 g~~~l~nrivlAPM~~~s-~~~~r~~~~~~Gg~gli~te~~-----~~~~~~~~~~~~~~~~~~~~~~~piivQL~g~~~ 136 (326)
-.++-+.++++|-|+-.| ++.+..++.++| . +.|+. +.+-+... ++++...-+.|+-+.+|..--+|
T Consensus 29 srLtGr~PillaGMTPtTVdp~ivAAaAnAG-h---waELAGGGq~t~e~~~~~---i~ql~~~lepG~t~qfN~ifldp 101 (717)
T COG4981 29 SRLTGRSPILLAGMTPTTVDPDIVAAAANAG-H---WAELAGGGQVTEEIFTNA---IEQLVSLLEPGRTAQFNSIFLDP 101 (717)
T ss_pred hhhcCCCCeeecCCCCCcCCHHHHHHHhcCC-c---eeeecCCcccCHHHHHHH---HHHHHhccCCCccceeeEEEech
Confidence 345567899999997543 566665555444 2 22221 11111111 22222222344444444432232
Q ss_pred HHH------HHHHHHHHHCC--CCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCC
Q 020423 137 DNL------AKATELANAYN--YDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDH 208 (326)
Q Consensus 137 ~~f------~~aA~~a~~aG--~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~ 208 (326)
--+ .+..+.++.-| .|+|-|..|-|. .+...|+++.+- ..|+|..+ +.+|.-
T Consensus 102 ylw~~qig~krLv~kara~G~~I~gvvIsAGIP~----------------le~A~ElI~~L~-~~G~~yv~-fKPGtI-- 161 (717)
T COG4981 102 YLWKLQIGGKRLVQKARASGAPIDGVVISAGIPS----------------LEEAVELIEELG-DDGFPYVA-FKPGTI-- 161 (717)
T ss_pred HHhhhcCChHHHHHHHHhcCCCcceEEEecCCCc----------------HHHHHHHHHHHh-hcCceeEE-ecCCcH--
Confidence 111 12333344444 689999887775 334556666652 23666432 334421
Q ss_pred ccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHH-
Q 020423 209 DSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR- 287 (326)
Q Consensus 209 ~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~- 287 (326)
+.+...+. |++..-...+ .+++.|+.+ +|+- .|......-...+.+++ ...+|-++..|||.+++++..++.
T Consensus 162 eqI~svi~-IAka~P~~pI-ilq~egGra--GGHH--SweDld~llL~tYs~lR-~~~NIvl~vGgGiGtp~~aa~YLTG 234 (717)
T COG4981 162 EQIRSVIR-IAKANPTFPI-ILQWEGGRA--GGHH--SWEDLDDLLLATYSELR-SRDNIVLCVGGGIGTPDDAAPYLTG 234 (717)
T ss_pred HHHHHHHH-HHhcCCCCce-EEEEecCcc--CCcc--chhhcccHHHHHHHHHh-cCCCEEEEecCCcCChhhccccccc
Confidence 22333333 3333222333 344445443 2321 12222222123334444 446999999999999999999884
Q ss_pred -----hC-----CChhhhhHHHHhCCc
Q 020423 288 -----KG-----AHHVMVGRAAYQNPW 304 (326)
Q Consensus 288 -----~G-----aD~V~iGRall~dP~ 304 (326)
.| .|++.+|+++++.-.
T Consensus 235 eWSt~~g~P~MP~DGiLvGtaaMatKE 261 (717)
T COG4981 235 EWSTAYGFPPMPFDGILVGTAAMATKE 261 (717)
T ss_pred chhhhcCCCCCCcceeEechhHHhhhh
Confidence 33 899999999987533
|
|
| >PRK09517 multifunctional thiamine-phosphate pyrophosphorylase/synthase/phosphomethylpyrimidine kinase; Provisional | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.023 Score=59.91 Aligned_cols=74 Identities=12% Similarity=0.059 Sum_probs=54.4
Q ss_pred CCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCC--CceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhC
Q 020423 225 SPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFP--DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN 302 (326)
Q Consensus 225 ~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~--~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~d 302 (326)
+|+|++.+..-...... + ...++..++.+.++.+... ++||++-||| +++++.++++.||++|.+-+++...
T Consensus 127 ~gaDYi~~Gpvf~T~tK--~---~~~~~lG~~~l~~~~~~~~~~~iPv~AiGGI-~~~~~~~~~~~Ga~giAvisai~~a 200 (755)
T PRK09517 127 ALPDVIGIGPVASTATK--P---DAPPALGVDGIAEIAAVAQDHGIASVAIGGV-GLRNAAELAATGIDGLCVVSAIMAA 200 (755)
T ss_pred CCCCEEEECCccccCCC--C---CCCCCCCHHHHHHHHHhcCcCCCCEEEECCC-CHHHHHHHHHcCCCEEEEehHhhCC
Confidence 46999998754321110 0 1113456788877776542 3999999999 9999999999999999999999976
Q ss_pred Cc
Q 020423 303 PW 304 (326)
Q Consensus 303 P~ 304 (326)
++
T Consensus 201 ~d 202 (755)
T PRK09517 201 AN 202 (755)
T ss_pred CC
Confidence 66
|
|
| >PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.012 Score=54.83 Aligned_cols=97 Identities=14% Similarity=0.296 Sum_probs=61.1
Q ss_pred HHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHH-HHH
Q 020423 182 VGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEY-YYA 260 (326)
Q Consensus 182 l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~-i~~ 260 (326)
+.+.++.+|+..+... |+-. +.++.+|..+ .+ ++|+|+|-+..-. +..... +..
T Consensus 182 i~~av~~~r~~~~~~~--~I~V---Ev~tleea~e----A~-~~GaD~I~LDn~~---------------~e~l~~av~~ 236 (288)
T PRK07428 182 IGEAITRIRQRIPYPL--TIEV---ETETLEQVQE----AL-EYGADIIMLDNMP---------------VDLMQQAVQL 236 (288)
T ss_pred HHHHHHHHHHhCCCCC--EEEE---ECCCHHHHHH----HH-HcCCCEEEECCCC---------------HHHHHHHHHH
Confidence 4566666777654222 2222 1134555433 22 5899999876311 111222 222
Q ss_pred HHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhCCc
Q 020423 261 LLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW 304 (326)
Q Consensus 261 i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~dP~ 304 (326)
+.+..+++|+.++||| +.+.+.++.++|+|.|.+|+....-|+
T Consensus 237 ~~~~~~~i~leAsGGI-t~~ni~~ya~tGvD~Isvgsl~~sa~~ 279 (288)
T PRK07428 237 IRQQNPRVKIEASGNI-TLETIRAVAETGVDYISSSAPITRSPW 279 (288)
T ss_pred HHhcCCCeEEEEECCC-CHHHHHHHHHcCCCEEEEchhhhCCCc
Confidence 2222468999999999 799999999999999999998875555
|
|
| >cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.13 Score=46.59 Aligned_cols=158 Identities=9% Similarity=0.005 Sum_probs=94.4
Q ss_pred CCCCChHHHHHHHHHcCCCcEEEecceeec-ccccccc---chhhhhh----c-CCC-CCcEEEEe---cCCCHHHHHHH
Q 020423 76 MMDWTDNHYRTLARLISKHAWLYTEMLAAE-TIIYQQG---NLDRFLA----F-SPE-QHPIVLQI---GGSNLDNLAKA 142 (326)
Q Consensus 76 M~~~s~~~~r~~~~~~Gg~gli~te~~~~~-~~~~~~~---~~~~~~~----~-~~~-~~piivQL---~g~~~~~f~~a 142 (326)
|.+.-|......+.+.| +..+++.-.... ...+.+. ..+.++. + ... ..|+++-+ ++..+++..+.
T Consensus 16 ~~~ayD~~sA~i~e~aG-~dai~v~~s~~a~~~G~pD~~~vtl~em~~~~~~I~r~~~~~pviaD~~~G~g~~~~~~~~~ 94 (240)
T cd06556 16 TLTAYDYSMAKQFADAG-LNVMLVGDSQGMTVAGYDDTLPYPVNDVPYHVRAVRRGAPLALIVADLPFGAYGAPTAAFEL 94 (240)
T ss_pred EecCCCHHHHHHHHHcC-CCEEEEChHHHHHhcCCCCCCCcCHHHHHHHHHHHHhhCCCCCEEEeCCCCCCcCHHHHHHH
Confidence 34556666666666655 777777643222 1122221 1122221 1 222 35888886 34567889999
Q ss_pred HHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCC-------------CCc
Q 020423 143 TELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVD-------------DHD 209 (326)
Q Consensus 143 A~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~-------------~~~ 209 (326)
++++.++|+++|.|--+ . ...+.+++++++ +++|..++-.... ...
T Consensus 95 ~~~l~~aGa~gv~iED~-------------------~-~~~~~i~ai~~a-~i~ViaRtd~~pq~~~~~gg~~~~~~~~~ 153 (240)
T cd06556 95 AKTFMRAGAAGVKIEGG-------------------E-WHIETLQMLTAA-AVPVIAHTGLTPQSVNTSGGDEGQYRGDE 153 (240)
T ss_pred HHHHHHcCCcEEEEcCc-------------------H-HHHHHHHHHHHc-CCeEEEEeCCchhhhhccCCceeeccCHH
Confidence 99999999999999421 1 233456666554 4787776554211 112
Q ss_pred cHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCC
Q 020423 210 SYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGG 275 (326)
Q Consensus 210 ~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~Gg 275 (326)
..++.++. ++.++++|+|.|.+.+. ..+.++++.++ +++|++++|.
T Consensus 154 ~~~~ai~R-a~ay~~AGAd~i~~e~~------------------~~e~~~~i~~~-~~~P~~~~ga 199 (240)
T cd06556 154 AGEQLIAD-ALAYAPAGADLIVMECV------------------PVELAKQITEA-LAIPLAGIGA 199 (240)
T ss_pred HHHHHHHH-HHHHHHcCCCEEEEcCC------------------CHHHHHHHHHh-CCCCEEEEec
Confidence 34555553 55678899999998642 15666677766 4899998764
|
Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT). |
| >PRK12290 thiE thiamine-phosphate pyrophosphorylase; Reviewed | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.022 Score=55.61 Aligned_cols=76 Identities=11% Similarity=-0.024 Sum_probs=54.1
Q ss_pred hhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcC--------CCceEEEeCCCCCHHHHHHHHHhCCChhh
Q 020423 223 SLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF--------PDLTFTLNGGINTVDEVNAALRKGAHHVM 294 (326)
Q Consensus 223 e~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~--------~~iPVIa~GgI~s~~da~~~l~~GaD~V~ 294 (326)
++.|+|||.+..-.....- + ...++..++.+.++.+.. .++||++-||| +++++.++++.|+++|.
T Consensus 317 ~~~gaDYI~lGPIFpT~TK--~---~~~~p~Gl~~L~~~~~l~~~~~~~~~~~iPVVAIGGI-~~~Ni~~vl~aGa~GVA 390 (437)
T PRK12290 317 VQIQPSYIALGHIFPTTTK--Q---MPSKPQGLVRLALYQKLIDTIPYQGQTGFPTVAIGGI-DQSNAEQVWQCGVSSLA 390 (437)
T ss_pred hhcCCCEEEECCccCCCCC--C---CCCCCCCHHHHHHHHHHhhhccccccCCCCEEEECCc-CHHHHHHHHHcCCCEEE
Confidence 3589999988654321110 0 112344566665544332 37999999999 89999999999999999
Q ss_pred hhHHHHhCCc
Q 020423 295 VGRAAYQNPW 304 (326)
Q Consensus 295 iGRall~dP~ 304 (326)
+-|++...++
T Consensus 391 VVSAI~~A~D 400 (437)
T PRK12290 391 VVRAITLAED 400 (437)
T ss_pred EehHhhcCCC
Confidence 9999997665
|
|
| >cd03321 mandelate_racemase Mandelate racemase (MR) catalyzes the Mg2+-dependent 1,1-proton transfer reaction that interconverts the enantiomers of mandelic acid | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.037 Score=53.10 Aligned_cols=134 Identities=10% Similarity=-0.007 Sum_probs=86.0
Q ss_pred cEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCC
Q 020423 126 PIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGV 205 (326)
Q Consensus 126 piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~ 205 (326)
|.-..+...+++++.+.++...+.||..+-+..|. ..++.-.+.++++|+.++..+.+.+-.
T Consensus 132 ~~y~s~~~~~~~~~~~~a~~~~~~Gf~~~KiKvg~----------------~~~~~d~~~v~air~~~g~~~~l~vDa-- 193 (355)
T cd03321 132 QAYDSHGLDGAKLATERAVTAAEEGFHAVKTKIGY----------------PTADEDLAVVRSIRQAVGDGVGLMVDY-- 193 (355)
T ss_pred eEEEeCCCChHHHHHHHHHHHHHhhhHHHhhhcCC----------------CChHhHHHHHHHHHHhhCCCCEEEEeC--
Confidence 33334434467788888887778899988886542 123444677889998875433332222
Q ss_pred CCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHH
Q 020423 206 DDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAA 285 (326)
Q Consensus 206 ~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~ 285 (326)
...-+.++..++ .+.+++.++++|. . ..++.+++.++++.+.. ++||.+.-.+.++.++.++
T Consensus 194 N~~~~~~~A~~~-~~~l~~~~i~~iE----e------------P~~~~d~~~~~~l~~~~-~ipia~~E~~~~~~~~~~~ 255 (355)
T cd03321 194 NQSLTVPEAIER-GQALDQEGLTWIE----E------------PTLQHDYEGHARIASAL-RTPVQMGENWLGPEEMFKA 255 (355)
T ss_pred CCCcCHHHHHHH-HHHHHcCCCCEEE----C------------CCCCcCHHHHHHHHHhc-CCCEEEcCCCcCHHHHHHH
Confidence 222234455553 4456778888885 1 11233467777777664 8999888888999999999
Q ss_pred HHhC-CChhhh
Q 020423 286 LRKG-AHHVMV 295 (326)
Q Consensus 286 l~~G-aD~V~i 295 (326)
++.+ +|.|++
T Consensus 256 i~~~~~d~i~~ 266 (355)
T cd03321 256 LSAGACDLVMP 266 (355)
T ss_pred HHhCCCCeEec
Confidence 8854 787765
|
MR is the first enzyme in the bacterial pathway that converts mandelic acid to benzoic acid and allows this pathway to utilize either enantiomer of mandelate. MR belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. |
| >PRK00230 orotidine 5'-phosphate decarboxylase; Reviewed | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.04 Score=49.66 Aligned_cols=139 Identities=14% Similarity=0.175 Sum_probs=77.8
Q ss_pred CCcEEEEec----CCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC-CCcEE
Q 020423 124 QHPIVLQIG----GSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVS 198 (326)
Q Consensus 124 ~~piivQL~----g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~-~~pv~ 198 (326)
+.++++-+. ++++. +.++.+.++|+|.+.+|...+ .+-+...+++.++.- +.-+.
T Consensus 53 ~~~i~~D~Kl~Di~~t~~---~~i~~~~~~gad~itvH~~ag-----------------~~~i~~~~~~~~~~~~~~~~~ 112 (230)
T PRK00230 53 GFKVFLDLKLHDIPNTVA---KAVRALAKLGVDMVNVHASGG-----------------PRMMKAAREALEPKSRPLLIA 112 (230)
T ss_pred CCCEEEEeehhhccccHH---HHHHHHHHcCCCEEEEcccCC-----------------HHHHHHHHHHhhccCCCeEEE
Confidence 456776653 34444 455556789999999996322 233444444433211 11222
Q ss_pred EEeccCCCCC--------ccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceE
Q 020423 199 VKCRIGVDDH--------DSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTF 270 (326)
Q Consensus 199 vK~r~g~~~~--------~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPV 270 (326)
|-+-..++.. .++++.+..+++...+.|+|.+.++... ...+++...+-.+
T Consensus 113 V~~lts~~~~~l~~~~~~~~~~~~v~~~a~~a~~~g~dgvv~~~~~---------------------~~~ir~~~~~~~~ 171 (230)
T PRK00230 113 VTVLTSMDEEDLAELGINLSLEEQVLRLAKLAQEAGLDGVVCSAQE---------------------AAAIREATGPDFL 171 (230)
T ss_pred EEECCCCCHHHHHhCcCCCCHHHHHHHHHHHHHHcCCeEEEeChHH---------------------HHHHHhhcCCceE
Confidence 2211111110 1123444445566667899888765311 1223333334445
Q ss_pred EEeCCCCCHH-----------HHHHHHHhCCChhhhhHHHHhCCc
Q 020423 271 TLNGGINTVD-----------EVNAALRKGAHHVMVGRAAYQNPW 304 (326)
Q Consensus 271 Ia~GgI~s~~-----------da~~~l~~GaD~V~iGRall~dP~ 304 (326)
+.++||. ++ ...++++.|+|+|.+||++...++
T Consensus 172 ~v~pGI~-~~g~~~~dq~~~~~~~~ai~~Gad~iVvGR~I~~a~d 215 (230)
T PRK00230 172 LVTPGIR-PAGSDAGDQKRVMTPAQAIAAGSDYIVVGRPITQAAD 215 (230)
T ss_pred EEcCCcC-CCCCCcchHHHHhCHHHHHHcCCCEEEECCcccCCCC
Confidence 7778886 34 577788899999999999997665
|
|
| >KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.02 Score=49.53 Aligned_cols=166 Identities=17% Similarity=0.261 Sum_probs=96.2
Q ss_pred cEEEEecCCCHHHHHHHHHHHHHCCCCEEEecC--CCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEecc
Q 020423 126 PIVLQIGGSNLDNLAKATELANAYNYDEINLNC--GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRI 203 (326)
Q Consensus 126 piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~--g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~ 203 (326)
.+..++...+-..+++-+.++..+|+|++-+.. |.-.++.+ +| --+++++|+..+.+...-+..
T Consensus 6 ~I~PSIL~~dfanL~~e~~~~l~~GadwlHlDVMDg~FVpNiT----~G----------~pvV~slR~~~~~~~ffD~Hm 71 (224)
T KOG3111|consen 6 KIAPSILSSDFANLAAECKKMLDAGADWLHLDVMDGHFVPNIT----FG----------PPVVESLRKHTGADPFFDVHM 71 (224)
T ss_pred eechhhhccchHHHHHHHHHHHHcCCCeEEEeeecccccCCcc----cc----------hHHHHHHHhccCCCcceeEEE
Confidence 345555556666777777888899999987753 22121111 33 346778887776653333332
Q ss_pred CCCCCccHHHHHHHHHHHhhhCCccEEEEecCC--------------------------cc------------------c
Q 020423 204 GVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRK--------------------------AL------------------L 239 (326)
Q Consensus 204 g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~--------------------------~~------------------~ 239 (326)
-.++ .++.+ .+. .++|++.+++|-.- .. .
T Consensus 72 MV~~---Peq~V---~~~-a~agas~~tfH~E~~q~~~~lv~~ir~~Gmk~G~alkPgT~Ve~~~~~~~~~D~vLvMtVe 144 (224)
T KOG3111|consen 72 MVEN---PEQWV---DQM-AKAGASLFTFHYEATQKPAELVEKIREKGMKVGLALKPGTPVEDLEPLAEHVDMVLVMTVE 144 (224)
T ss_pred eecC---HHHHH---HHH-HhcCcceEEEEEeeccCHHHHHHHHHHcCCeeeEEeCCCCcHHHHHHhhccccEEEEEEec
Confidence 2222 22222 222 24677776665221 00 0
Q ss_pred CCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHh--CCchhHHhHHHhhhC
Q 020423 240 NGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ--NPWYTLGHVDTAIYG 316 (326)
Q Consensus 240 ~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~--dP~l~~~~i~~~~~~ 316 (326)
.|+.+. ..-+--...+..++++++++-+=.-||+ +++.+.++.+.||+.+..|++.+. ||.-+.+.+.+....
T Consensus 145 PGFGGQ---kFme~mm~KV~~lR~kyp~l~ievDGGv-~~~ti~~~a~AGAN~iVaGsavf~a~d~~~vi~~lr~~v~~ 219 (224)
T KOG3111|consen 145 PGFGGQ---KFMEDMMPKVEWLREKYPNLDIEVDGGV-GPSTIDKAAEAGANMIVAGSAVFGAADPSDVISLLRNSVEK 219 (224)
T ss_pred CCCchh---hhHHHHHHHHHHHHHhCCCceEEecCCc-CcchHHHHHHcCCCEEEecceeecCCCHHHHHHHHHHHHhh
Confidence 011110 0000002345566778888777789998 789999999999999999999885 566566666665443
|
|
| >KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.037 Score=53.12 Aligned_cols=132 Identities=17% Similarity=0.191 Sum_probs=80.7
Q ss_pred HHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC-CCcEEEEeccCCCCCccHHHHHHHH
Q 020423 140 AKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFI 218 (326)
Q Consensus 140 ~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~-~~pv~vK~r~g~~~~~~~~e~~~~i 218 (326)
.....++.++|.|.|-|..+ + | +..+-.++++.|++.. ...|+. -+..+-+.
T Consensus 253 K~rl~ll~~aGvdvviLDSS------q-----G-----nS~~qiemik~iK~~yP~l~Via------GNVVT~~q----- 305 (503)
T KOG2550|consen 253 KERLDLLVQAGVDVVILDSS------Q-----G-----NSIYQLEMIKYIKETYPDLQIIA------GNVVTKEQ----- 305 (503)
T ss_pred hHHHHHhhhcCCcEEEEecC------C-----C-----cchhHHHHHHHHHhhCCCceeec------cceeeHHH-----
Confidence 34556778899999999642 1 2 2455678999998875 333322 12222222
Q ss_pred HHHhhhCCccEEEEecCCccc---CCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhh
Q 020423 219 YKVSSLSPTRHFIIHSRKALL---NGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMV 295 (326)
Q Consensus 219 a~~le~~Gvd~I~v~~~~~~~---~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~i 295 (326)
++.|-.+|+|.+.|--+.... +.. .+..+.....-++ +.+...++ .+|||+-|||.+.-++.+++..||+.||+
T Consensus 306 a~nLI~aGaDgLrVGMGsGSiCiTqev-ma~GrpQ~TAVy~-va~~A~q~-gvpviADGGiq~~Ghi~KAl~lGAstVMm 382 (503)
T KOG2550|consen 306 AANLIAAGADGLRVGMGSGSICITQKV-MACGRPQGTAVYK-VAEFANQF-GVPCIADGGIQNVGHVVKALGLGASTVMM 382 (503)
T ss_pred HHHHHHccCceeEeccccCceeeecee-eeccCCcccchhh-HHHHHHhc-CCceeecCCcCccchhHhhhhcCchhhee
Confidence 223346999999986443210 000 0000111111122 23444555 89999999999999999999999999999
Q ss_pred hHHHHh
Q 020423 296 GRAAYQ 301 (326)
Q Consensus 296 GRall~ 301 (326)
|.-|-.
T Consensus 383 G~lLAg 388 (503)
T KOG2550|consen 383 GGLLAG 388 (503)
T ss_pred cceeee
Confidence 976543
|
|
| >PRK07565 dihydroorotate dehydrogenase 2; Reviewed | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.03 Score=53.26 Aligned_cols=108 Identities=11% Similarity=0.055 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCc-ccCCCCcCCcCCCCCccHHH
Q 020423 179 PKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKA-LLNGISPAENRTIPPLKYEY 257 (326)
Q Consensus 179 ~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~-~~~g~~~~~~~~~~~~~~~~ 257 (326)
.+...+.+..+++..+.|+++++... +.++..+ +++.++++|+|+|.++-... ...+..+ .......++.
T Consensus 86 ~d~~~~~i~~~~~~~~~pvi~sI~g~-----~~~e~~~-~a~~~~~agad~ielN~scpp~~~~~~g---~~~~~~~~ei 156 (334)
T PRK07565 86 PEEYLELIRRAKEAVDIPVIASLNGS-----SAGGWVD-YARQIEQAGADALELNIYYLPTDPDISG---AEVEQRYLDI 156 (334)
T ss_pred HHHHHHHHHHHHHhcCCcEEEEeccC-----CHHHHHH-HHHHHHHcCCCEEEEeCCCCCCCCCCcc---ccHHHHHHHH
Confidence 45666677777777789999998662 2334444 45566788999999974321 0011111 0111112456
Q ss_pred HHHHHhcCCCceEEEe--CCCCCHHHHHHHH-HhCCChhhhh
Q 020423 258 YYALLRDFPDLTFTLN--GGINTVDEVNAAL-RKGAHHVMVG 296 (326)
Q Consensus 258 i~~i~~~~~~iPVIa~--GgI~s~~da~~~l-~~GaD~V~iG 296 (326)
+.++++. .++||++- +++.+..++.+.+ +.|+|+|.+.
T Consensus 157 l~~v~~~-~~iPV~vKl~p~~~~~~~~a~~l~~~G~dgI~~~ 197 (334)
T PRK07565 157 LRAVKSA-VSIPVAVKLSPYFSNLANMAKRLDAAGADGLVLF 197 (334)
T ss_pred HHHHHhc-cCCcEEEEeCCCchhHHHHHHHHHHcCCCeEEEE
Confidence 6666554 48999976 4554556665555 4899998663
|
|
| >PRK14057 epimerase; Provisional | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.11 Score=47.54 Aligned_cols=153 Identities=16% Similarity=0.193 Sum_probs=89.3
Q ss_pred CCCcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecC--CCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEE
Q 020423 123 EQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNC--GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVK 200 (326)
Q Consensus 123 ~~~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~--g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK 200 (326)
...++.++|...+...+.+..++++++|+|.+-+-. |.-.++. .|| +++ ++++++ +.|+.|-
T Consensus 18 ~~~~IspSil~aD~~~L~~el~~l~~~g~d~lHiDVMDG~FVPNi----tfG------p~~----i~~i~~--~~p~DvH 81 (254)
T PRK14057 18 ASYPLSVGILAGQWIALHRYLQQLEALNQPLLHLDLMDGQFCPQF----TVG------PWA----VGQLPQ--TFIKDVH 81 (254)
T ss_pred cCCceEeehhhcCHHHHHHHHHHHHHCCCCEEEEeccCCccCCcc----ccC------HHH----HHHhcc--CCCeeEE
Confidence 456789999999999999999999999999876643 2211110 144 333 444443 3555554
Q ss_pred eccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCc-----------cc------------C-----------------
Q 020423 201 CRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKA-----------LL------------N----------------- 240 (326)
Q Consensus 201 ~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~-----------~~------------~----------------- 240 (326)
+-. ++ .+..++ .+.++|+|+|++|--.. .. .
T Consensus 82 LMV--~~---P~~~i~----~~~~aGad~It~H~Ea~~~~~~~l~~Ir~~G~k~~~~~~~~kaGlAlnP~Tp~e~i~~~l 152 (254)
T PRK14057 82 LMV--AD---QWTAAQ----ACVKAGAHCITLQAEGDIHLHHTLSWLGQQTVPVIGGEMPVIRGISLCPATPLDVIIPIL 152 (254)
T ss_pred eee--CC---HHHHHH----HHHHhCCCEEEEeeccccCHHHHHHHHHHcCCCcccccccceeEEEECCCCCHHHHHHHH
Confidence 333 11 122111 22346777777663310 00 0
Q ss_pred -------------CCCcCCcCCCCCccHHHHHHH---HhcC-CCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhCC
Q 020423 241 -------------GISPAENRTIPPLKYEYYYAL---LRDF-PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNP 303 (326)
Q Consensus 241 -------------g~~~~~~~~~~~~~~~~i~~i---~~~~-~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~dP 303 (326)
|..+. ..-+..++.+.++ +++. .++.|-.-||| +.+.+.++.+.|||.+.+|+++..++
T Consensus 153 ~~vD~VLvMtV~PGfgGQ---~Fi~~~l~KI~~lr~~~~~~~~~~~IeVDGGI-~~~ti~~l~~aGad~~V~GSalF~~~ 228 (254)
T PRK14057 153 SDVEVIQLLAVNPGYGSK---MRSSDLHERVAQLLCLLGDKREGKIIVIDGSL-TQDQLPSLIAQGIDRVVSGSALFRDD 228 (254)
T ss_pred HhCCEEEEEEECCCCCch---hccHHHHHHHHHHHHHHHhcCCCceEEEECCC-CHHHHHHHHHCCCCEEEEChHhhCCC
Confidence 11110 0011112333332 2222 25678888999 77899999999999999999998766
Q ss_pred c
Q 020423 304 W 304 (326)
Q Consensus 304 ~ 304 (326)
+
T Consensus 229 d 229 (254)
T PRK14057 229 R 229 (254)
T ss_pred C
Confidence 6
|
|
| >cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.027 Score=51.97 Aligned_cols=93 Identities=17% Similarity=0.302 Sum_probs=57.4
Q ss_pred HHHHHHHhcCC--CcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHH
Q 020423 184 EAMSVIAANTN--VPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYAL 261 (326)
Q Consensus 184 eiv~avr~~~~--~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i 261 (326)
+.++.+|+..+ .++.+- . ++.+|..+ . .++|+|+|-+..-. +.....+.+.
T Consensus 169 ~~v~~~r~~~~~~~~I~ve--v-----~t~eea~~----A-~~~gaD~I~ld~~~---------------~e~l~~~v~~ 221 (269)
T cd01568 169 EAVKRARAAAPFEKKIEVE--V-----ETLEEAEE----A-LEAGADIIMLDNMS---------------PEELKEAVKL 221 (269)
T ss_pred HHHHHHHHhCCCCCeEEEe--c-----CCHHHHHH----H-HHcCCCEEEECCCC---------------HHHHHHHHHH
Confidence 45677777664 333332 2 23444433 2 24799999875321 1112222222
Q ss_pred HhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhCCc
Q 020423 262 LRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW 304 (326)
Q Consensus 262 ~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~dP~ 304 (326)
.+..+++||.+.||| +++.+.++.+.|+|++.+|.....-|+
T Consensus 222 i~~~~~i~i~asGGI-t~~ni~~~a~~Gad~Isvgal~~s~~~ 263 (269)
T cd01568 222 LKGLPRVLLEASGGI-TLENIRAYAETGVDVISTGALTHSAPA 263 (269)
T ss_pred hccCCCeEEEEECCC-CHHHHHHHHHcCCCEEEEcHHHcCCCc
Confidence 222257999999999 799999999999999999866655544
|
It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other. |
| >PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.0074 Score=57.58 Aligned_cols=62 Identities=21% Similarity=0.295 Sum_probs=45.0
Q ss_pred hhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhh
Q 020423 222 SSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVG 296 (326)
Q Consensus 222 le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iG 296 (326)
+.++|+|.|.++.... ++. ...+.++++++.++++||| .|+|-|.+.++++++.|||+|-+|
T Consensus 116 L~~agvD~ivID~a~g----~s~--------~~~~~ik~ik~~~~~~~vi-aGNV~T~e~a~~L~~aGad~vkVG 177 (352)
T PF00478_consen 116 LVEAGVDVIVIDSAHG----HSE--------HVIDMIKKIKKKFPDVPVI-AGNVVTYEGAKDLIDAGADAVKVG 177 (352)
T ss_dssp HHHTT-SEEEEE-SST----TSH--------HHHHHHHHHHHHSTTSEEE-EEEE-SHHHHHHHHHTT-SEEEES
T ss_pred HHHcCCCEEEccccCc----cHH--------HHHHHHHHHHHhCCCceEE-ecccCCHHHHHHHHHcCCCEEEEe
Confidence 3458999999986432 111 1246778888888889988 677999999999999999998877
|
These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. |
| >TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.68 Score=43.22 Aligned_cols=221 Identities=13% Similarity=0.081 Sum_probs=115.2
Q ss_pred CcEEEccCCCCChHHHHHHHHHcCCCcEEEecceeec-ccccccc---chhhhhh-----cCCCCCcEEEEe---cCCCH
Q 020423 69 PWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAE-TIIYQQG---NLDRFLA-----FSPEQHPIVLQI---GGSNL 136 (326)
Q Consensus 69 nrivlAPM~~~s~~~~r~~~~~~Gg~gli~te~~~~~-~~~~~~~---~~~~~~~-----~~~~~~piivQL---~g~~~ 136 (326)
+.++++| ++-|..-.+++...| +..++|...... .+...+. ....++. ....+.|+++-+ +|..+
T Consensus 14 ~~~~~~p--g~~D~lSAri~e~aG-f~ai~~ss~~va~slG~pD~g~l~~~e~~~~~~~I~~~~~lPv~aD~d~GyG~~~ 90 (290)
T TIGR02321 14 GRLFTAM--AAHNPLVAKLAEQAG-FGGIWGSGFELSASYAVPDANILSMSTHLEMMRAIASTVSIPLIADIDTGFGNAV 90 (290)
T ss_pred CCCEEec--cccCHHHHHHHHHcC-CCEEEECHHHHHHHCCCCCcccCCHHHHHHHHHHHHhccCCCEEEECCCCCCCcH
Confidence 4566666 444555555555555 555555432211 1222221 1112211 233567888887 34455
Q ss_pred HHHHHHHHHHHHCCCCEEEecCCC-CCCcccCCCCc--c-ccccCCHHHHHHHHHHHHhc-CCCcEEEEeccCCC-CCcc
Q 020423 137 DNLAKATELANAYNYDEINLNCGC-PSPKVAGHGCF--G-VSLMLDPKFVGEAMSVIAAN-TNVPVSVKCRIGVD-DHDS 210 (326)
Q Consensus 137 ~~f~~aA~~a~~aG~d~Iein~g~-P~~~~~r~d~y--G-gsl~~r~~~l~eiv~avr~~-~~~pv~vK~r~g~~-~~~~ 210 (326)
+..+..+++.++|+.+|.|.=.. |. +.+.+ | ..+ -.++...+-+++++++ .+.++.+=-|...- ....
T Consensus 91 -~v~~tV~~~~~aGvagi~IEDq~~pk----~cg~~~~g~~~l-~~~ee~~~kI~Aa~~a~~~~d~~I~ARTDa~~~~~g 164 (290)
T TIGR02321 91 -NVHYVVPQYEAAGASAIVMEDKTFPK----DTSLRTDGRQEL-VRIEEFQGKIAAATAARADRDFVVIARVEALIAGLG 164 (290)
T ss_pred -HHHHHHHHHHHcCCeEEEEeCCCCCc----ccccccCCCccc-cCHHHHHHHHHHHHHhCCCCCEEEEEEeccccccCC
Confidence 68899999999999999995432 22 22221 2 122 2344444444444443 35556554454321 1223
Q ss_pred HHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCC-CceEEEeCCCCCHHHHHHHHHhC
Q 020423 211 YNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFP-DLTFTLNGGINTVDEVNAALRKG 289 (326)
Q Consensus 211 ~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~-~iPVIa~GgI~s~~da~~~l~~G 289 (326)
.+|.++. ++.+.++|+|.|-+++... ..+.+.++.++.. .+||+.+.+-.-.-...++-+.|
T Consensus 165 ~deAI~R-a~aY~eAGAD~ifv~~~~~----------------~~~ei~~~~~~~~~p~pv~~~~~~~p~~~~~~l~~lg 227 (290)
T TIGR02321 165 QQEAVRR-GQAYEEAGADAILIHSRQK----------------TPDEILAFVKSWPGKVPLVLVPTAYPQLTEADIAALS 227 (290)
T ss_pred HHHHHHH-HHHHHHcCCCEEEecCCCC----------------CHHHHHHHHHhcCCCCCeEEecCCCCCCCHHHHHHhc
Confidence 4566665 3456679999999886311 1455666666652 36886554311111233455566
Q ss_pred -CChhhhhHHHHhCCchhHHhHHHhhh
Q 020423 290 -AHHVMVGRAAYQNPWYTLGHVDTAIY 315 (326)
Q Consensus 290 -aD~V~iGRall~dP~l~~~~i~~~~~ 315 (326)
...|..|..++..-.-..+..-..+.
T Consensus 228 ~~~~v~~g~~~~~aa~~a~~~~~~~i~ 254 (290)
T TIGR02321 228 KVGIVIYGNHAIRAAVGAVREVFARIR 254 (290)
T ss_pred CCcEEEEChHHHHHHHHHHHHHHHHHH
Confidence 77788886665443333344444443
|
This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2. |
| >TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.033 Score=51.31 Aligned_cols=91 Identities=15% Similarity=0.223 Sum_probs=57.5
Q ss_pred HHHHHHHHhcCC--CcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHH
Q 020423 183 GEAMSVIAANTN--VPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYA 260 (326)
Q Consensus 183 ~eiv~avr~~~~--~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~ 260 (326)
.+-++.+|+..+ .++.+- . ++.+|..+ ..+.|+|+|-+..- ..+.+++
T Consensus 165 ~~av~~~r~~~~~~~~Igve--v-----~t~eea~~-----A~~~gaDyI~ld~~------------------~~e~lk~ 214 (265)
T TIGR00078 165 EKAVKRARAAAPFALKIEVE--V-----ESLEEAEE-----AAEAGADIIMLDNM------------------KPEEIKE 214 (265)
T ss_pred HHHHHHHHHhCCCCCeEEEE--e-----CCHHHHHH-----HHHcCCCEEEECCC------------------CHHHHHH
Confidence 345666677664 333332 2 23444433 23689999977431 1233444
Q ss_pred HHhcC-CCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhCCc
Q 020423 261 LLRDF-PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW 304 (326)
Q Consensus 261 i~~~~-~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~dP~ 304 (326)
..+.. ..+||.++||| +.+.+.++.+.|+|++.+|.....-|+
T Consensus 215 ~v~~~~~~ipi~AsGGI-~~~ni~~~a~~Gvd~Isvgait~sa~~ 258 (265)
T TIGR00078 215 AVQLLKGRVLLEASGGI-TLDNLEEYAETGVDVISSGALTHSVPA 258 (265)
T ss_pred HHHHhcCCCcEEEECCC-CHHHHHHHHHcCCCEEEeCHHHcCCCc
Confidence 44432 14899999999 799999999999999999654433344
|
Synonym: quinolinate phosphoribosyltransferase (decarboxylating) |
| >COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.046 Score=50.36 Aligned_cols=153 Identities=14% Similarity=0.168 Sum_probs=84.4
Q ss_pred HHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHHH
Q 020423 141 KATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYK 220 (326)
Q Consensus 141 ~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia~ 220 (326)
-.|+.++++||+++-+..+.=...-...| +|- .-.+.+.+.++.|.+.+++||+|-+-.|+.+..++.++ + +
T Consensus 29 ~sA~la~~aGF~al~~sg~~vA~slG~pD-~~~---~t~~e~~~~vrrI~~a~~lPv~vD~dtGfG~~~nvart---V-~ 100 (289)
T COG2513 29 GSALLAERAGFKALYLSGAGVAASLGLPD-LGI---TTLDEVLADARRITDAVDLPVLVDIDTGFGEALNVART---V-R 100 (289)
T ss_pred HHHHHHHHcCCeEEEeccHHHHHhcCCCc-ccc---ccHHHHHHHHHHHHhhcCCceEEeccCCCCcHHHHHHH---H-H
Confidence 46788999999999996431110101112 121 12456677777777888999999999887764444333 3 3
Q ss_pred HhhhCCccEEEEecCCc-ccCCCCcCCcCCCCCc--cHHHHHHHHhcCCCceEEEe--------CCCC-CHHHHHHHHHh
Q 020423 221 VSSLSPTRHFIIHSRKA-LLNGISPAENRTIPPL--KYEYYYALLRDFPDLTFTLN--------GGIN-TVDEVNAALRK 288 (326)
Q Consensus 221 ~le~~Gvd~I~v~~~~~-~~~g~~~~~~~~~~~~--~~~~i~~i~~~~~~iPVIa~--------GgI~-s~~da~~~l~~ 288 (326)
.++++|+..+++..-.. ...|+-. +..+.+. .-+.++.+++...+.+++.+ ||+. ..+.+..+.+.
T Consensus 101 ~~~~aG~agi~iEDq~~pk~cgh~~--gk~l~~~~e~v~rIkAa~~a~~~~~fvi~ARTda~~~~~ld~AI~Ra~AY~eA 178 (289)
T COG2513 101 ELEQAGAAGIHIEDQVGPKRCGHLP--GKELVSIDEMVDRIKAAVEARRDPDFVIIARTDALLVEGLDDAIERAQAYVEA 178 (289)
T ss_pred HHHHcCcceeeeeecccchhcCCCC--CCCcCCHHHHHHHHHHHHHhccCCCeEEEeehHHHHhccHHHHHHHHHHHHHc
Confidence 45689999999965432 1122211 1111121 12345555444444444433 4422 12334556668
Q ss_pred CCChhhhhHHHHhCCch
Q 020423 289 GAHHVMVGRAAYQNPWY 305 (326)
Q Consensus 289 GaD~V~iGRall~dP~l 305 (326)
|||++-. ..+.+++.
T Consensus 179 GAD~if~--~al~~~e~ 193 (289)
T COG2513 179 GADAIFP--EALTDLEE 193 (289)
T ss_pred CCcEEcc--ccCCCHHH
Confidence 9998754 34455553
|
|
| >PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.037 Score=51.28 Aligned_cols=94 Identities=11% Similarity=0.147 Sum_probs=61.3
Q ss_pred HHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHH
Q 020423 182 VGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYAL 261 (326)
Q Consensus 182 l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i 261 (326)
+.+-++.+|+..+....+.++. .+.++..+ . .+.|+|+|-+.. ...+.++++
T Consensus 174 ~~~~v~~aR~~~~~~~~Igvsv-----~tleea~~----A-~~~gaDyI~lD~------------------~~~e~l~~~ 225 (277)
T PRK08072 174 ITKAVTSVREKLGHMVKIEVET-----ETEEQVRE----A-VAAGADIIMFDN------------------RTPDEIREF 225 (277)
T ss_pred HHHHHHHHHHhCCCCCEEEEEe-----CCHHHHHH----H-HHcCCCEEEECC------------------CCHHHHHHH
Confidence 4566677777765333333333 23444333 2 358999997731 113445555
Q ss_pred HhcC-CCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhCCc
Q 020423 262 LRDF-PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW 304 (326)
Q Consensus 262 ~~~~-~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~dP~ 304 (326)
++.. ..+||.+.||| +.+.+.++.+.|+|+|.+|.....-|+
T Consensus 226 ~~~~~~~i~i~AiGGI-t~~ni~~~a~~Gvd~IAvg~l~~sa~~ 268 (277)
T PRK08072 226 VKLVPSAIVTEASGGI-TLENLPAYGGTGVDYISLGFLTHSVKA 268 (277)
T ss_pred HHhcCCCceEEEECCC-CHHHHHHHHHcCCCEEEEChhhcCCcc
Confidence 5433 25788899999 999999999999999999986653444
|
|
| >PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.4 Score=42.59 Aligned_cols=179 Identities=13% Similarity=0.143 Sum_probs=91.7
Q ss_pred CCCChHHHHHHHHHcCCCcEEEecceeeccccccccchhhhhh-cCCCCCcEEEEecCCCHHHHHHHHHHHHHCCCCEEE
Q 020423 77 MDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLA-FSPEQHPIVLQIGGSNLDNLAKATELANAYNYDEIN 155 (326)
Q Consensus 77 ~~~s~~~~r~~~~~~Gg~gli~te~~~~~~~~~~~~~~~~~~~-~~~~~~piivQL~g~~~~~f~~aA~~a~~aG~d~Ie 155 (326)
+|.++.+=..++.+.| ++++..=+....+..-..+..+.+.+ +++.-.++.|= ...+++ ...+.+++++.|.|.
T Consensus 8 CGi~~~eda~~~~~~G-ad~iGfI~~~~S~R~V~~~~a~~i~~~~~~~i~~VgVf-~~~~~~---~i~~~~~~~~~d~vQ 82 (210)
T PRK01222 8 CGITTPEDAEAAAELG-ADAIGFVFYPKSPRYVSPEQAAELAAALPPFVKVVGVF-VNASDE---EIDEIVETVPLDLLQ 82 (210)
T ss_pred CCCCcHHHHHHHHHcC-CCEEEEccCCCCCCcCCHHHHHHHHHhCCCCCCEEEEE-eCCCHH---HHHHHHHhcCCCEEE
Confidence 5777777666666665 55433321111111111112222222 22222233321 223444 344556789999999
Q ss_pred ecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecC
Q 020423 156 LNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSR 235 (326)
Q Consensus 156 in~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~ 235 (326)
||...+ +++ ++.+|+..+.+++-.++.. +.. ++.. ..+. ...+|++-+...
T Consensus 83 LHg~e~-----------------~~~----~~~l~~~~~~~iik~i~v~--~~~---~l~~-~~~~--~~~~d~~L~Ds~ 133 (210)
T PRK01222 83 LHGDET-----------------PEF----CRQLKRRYGLPVIKALRVR--SAG---DLEA-AAAY--YGDADGLLLDAY 133 (210)
T ss_pred ECCCCC-----------------HHH----HHHHHhhcCCcEEEEEecC--CHH---HHHH-HHhh--hccCCEEEEcCC
Confidence 985221 222 4455555567766555553 111 2211 1111 136898888765
Q ss_pred CcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHH-hCCChhhhhHHHHh
Q 020423 236 KALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQ 301 (326)
Q Consensus 236 ~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~-~GaD~V~iGRall~ 301 (326)
....+| ++ ...+|..+. +.. ..|++.+||| +++.+.++++ .+..+|=+.+++=.
T Consensus 134 ~~~~GG-tG------~~~dw~~l~---~~~-~~p~~LAGGi-~peNv~~ai~~~~p~gvDvsSgvE~ 188 (210)
T PRK01222 134 VGLPGG-TG------KTFDWSLLP---AGL-AKPWILAGGL-NPDNVAEAIRQVRPYGVDVSSGVES 188 (210)
T ss_pred CCCCCC-CC------CccchHHhh---hcc-CCCEEEECCC-CHHHHHHHHHhcCCCEEEecCceEC
Confidence 431122 11 223476551 233 5699999999 8999999987 36666666555543
|
|
| >cd03325 D-galactonate_dehydratase D-galactonate dehydratase catalyses the dehydration of galactonate to 2-keto-3-deoxygalactnate (KDGal), as part of the D-galactonate nonphosphorolytic catabolic Entner-Doudoroff pathway | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.15 Score=48.90 Aligned_cols=95 Identities=11% Similarity=0.051 Sum_probs=56.7
Q ss_pred cEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCC
Q 020423 126 PIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGV 205 (326)
Q Consensus 126 piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~ 205 (326)
|+-..+...++++..+.++...+.||..+-+..|.+... .+. + ..++.-.+.++++|+.++..+.+.+-.
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~KiKvg~~~~~---~~~-~----~~~~~D~~~i~avr~~~g~~~~l~vDa-- 183 (352)
T cd03325 114 RVYSWIGGDRPSDVAEAARARREAGFTAVKMNATEELQW---IDT-S----KKVDAAVERVAALREAVGPDIDIGVDF-- 183 (352)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHcCCCEEEecCCCCccc---CCC-H----HHHHHHHHHHHHHHHhhCCCCEEEEEC--
Confidence 333334445778888888888889999999988743211 111 1 235566788899988875433332222
Q ss_pred CCCccHHHHHHHHHHHhhhCCccEEE
Q 020423 206 DDHDSYNQLCDFIYKVSSLSPTRHFI 231 (326)
Q Consensus 206 ~~~~~~~e~~~~ia~~le~~Gvd~I~ 231 (326)
...-+.++..+ +.+.+++.++++|.
T Consensus 184 N~~~~~~~A~~-~~~~l~~~~i~~iE 208 (352)
T cd03325 184 HGRVSKPMAKD-LAKELEPYRLLFIE 208 (352)
T ss_pred CCCCCHHHHHH-HHHhccccCCcEEE
Confidence 22223445455 34456778888885
|
D-galactonate dehydratase belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. |
| >PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.1 Score=48.40 Aligned_cols=150 Identities=10% Similarity=0.145 Sum_probs=95.4
Q ss_pred CCCcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEec
Q 020423 123 EQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCR 202 (326)
Q Consensus 123 ~~~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r 202 (326)
..-|+.+.|-|... | +..+++.++||+.|-+-.+ .. .++.+.+...++++.... .|++|-.-+.
T Consensus 73 ~~vPV~lHLDH~~~--~-e~i~~Ai~~GftSVM~DgS-~l-----------~~eeNi~~T~~vve~Ah~-~gv~VEaElG 136 (283)
T PRK07998 73 MDVPVSLHLDHGKT--F-EDVKQAVRAGFTSVMIDGA-AL-----------PFEENIAFTKEAVDFAKS-YGVPVEAELG 136 (283)
T ss_pred CCCCEEEECcCCCC--H-HHHHHHHHcCCCEEEEeCC-CC-----------CHHHHHHHHHHHHHHHHH-cCCEEEEEec
Confidence 34577777754321 1 2333456778888888432 11 223567788888877654 5666644332
Q ss_pred c--CCCC--------CccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEE
Q 020423 203 I--GVDD--------HDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTL 272 (326)
Q Consensus 203 ~--g~~~--------~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa 272 (326)
. |.++ ..++++. .+..++.|+|.+-++-++.. +-+. . |..+++.++++.+.. ++|++.
T Consensus 137 ~vgg~ed~~~~~~~~~T~pe~a----~~Fv~~TgvD~LAvaiGt~H-G~Y~-----~-p~l~~~~l~~I~~~~-~vPLVl 204 (283)
T PRK07998 137 AILGKEDDHVSEADCKTEPEKV----KDFVERTGCDMLAVSIGNVH-GLED-----I-PRIDIPLLKRIAEVS-PVPLVI 204 (283)
T ss_pred cCCCccccccccccccCCHHHH----HHHHHHhCcCeeehhccccc-cCCC-----C-CCcCHHHHHHHHhhC-CCCEEE
Confidence 1 2221 1234444 44556789999998766541 1110 1 345689999987765 999999
Q ss_pred eCCCCCH-HHHHHHHHhCCChhhhhHHHH
Q 020423 273 NGGINTV-DEVNAALRKGAHHVMVGRAAY 300 (326)
Q Consensus 273 ~GgI~s~-~da~~~l~~GaD~V~iGRall 300 (326)
-||-..+ +++.++++.|+.-|-++|.+.
T Consensus 205 HGgSG~~~e~~~~ai~~Gi~KiNi~Tel~ 233 (283)
T PRK07998 205 HGGSGIPPEILRSFVNYKVAKVNIASDLR 233 (283)
T ss_pred eCCCCCCHHHHHHHHHcCCcEEEECHHHH
Confidence 9998777 668889999999999999874
|
|
| >PRK08999 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.0097 Score=55.90 Aligned_cols=69 Identities=17% Similarity=0.213 Sum_probs=50.6
Q ss_pred hhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHH
Q 020423 223 SLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAA 299 (326)
Q Consensus 223 e~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRal 299 (326)
.+.|+||+.+..-..... . +..++..++.+.++.+.. ++||++-||| +++++.++++.|+++|.+-+++
T Consensus 243 ~~~~~dyi~~gpvf~t~t--k----~~~~~~g~~~~~~~~~~~-~~Pv~AiGGI-~~~~~~~~~~~g~~gva~i~~~ 311 (312)
T PRK08999 243 QRLGVDFAVLSPVQPTAS--H----PGAAPLGWEGFAALIAGV-PLPVYALGGL-GPGDLEEAREHGAQGIAGIRGL 311 (312)
T ss_pred HhcCCCEEEECCCcCCCC--C----CCCCCCCHHHHHHHHHhC-CCCEEEECCC-CHHHHHHHHHhCCCEEEEEEEe
Confidence 357999999875432111 0 112344577777776654 8999999999 9999999999999999887654
|
|
| >cd03328 MR_like_3 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 3 | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.084 Score=50.65 Aligned_cols=75 Identities=13% Similarity=0.063 Sum_probs=48.3
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCC--cEEEEeccCCCCCccHH
Q 020423 135 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNV--PVSVKCRIGVDDHDSYN 212 (326)
Q Consensus 135 ~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~--pv~vK~r~g~~~~~~~~ 212 (326)
+++++.+.++...+.||..+-+..| .+++.-.+.++++|+.++. .+.+-...+| +.+
T Consensus 138 ~~e~~~~~a~~~~~~Gf~~~Kikvg-----------------~~~~~d~~~v~~vRe~~G~~~~l~vDaN~~~----~~~ 196 (352)
T cd03328 138 DDDRLREQLSGWVAQGIPRVKMKIG-----------------RDPRRDPDRVAAARRAIGPDAELFVDANGAY----SRK 196 (352)
T ss_pred CHHHHHHHHHHHHHCCCCEEEeecC-----------------CCHHHHHHHHHHHHHHcCCCCeEEEECCCCC----CHH
Confidence 5788888888888899999999653 1234556788888888854 3433333223 344
Q ss_pred HHHHHHHHHhhhCCccEEE
Q 020423 213 QLCDFIYKVSSLSPTRHFI 231 (326)
Q Consensus 213 e~~~~ia~~le~~Gvd~I~ 231 (326)
+..+ +.+.+++.++.++.
T Consensus 197 ~A~~-~~~~l~~~~~~~~E 214 (352)
T cd03328 197 QALA-LARAFADEGVTWFE 214 (352)
T ss_pred HHHH-HHHHHHHhCcchhh
Confidence 5555 34556777776653
|
Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown. |
| >cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.03 Score=51.70 Aligned_cols=90 Identities=18% Similarity=0.266 Sum_probs=58.6
Q ss_pred HHHHHHHHhcCC--CcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHH
Q 020423 183 GEAMSVIAANTN--VPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYA 260 (326)
Q Consensus 183 ~eiv~avr~~~~--~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~ 260 (326)
.+-++.+|+..+ .++.+- . .+.+|..+ . .+.|+|+|-+..- ..+.+++
T Consensus 169 ~~~v~~~r~~~~~~~~Igve--v-----~s~eea~~----A-~~~gaDyI~ld~~------------------~~e~l~~ 218 (268)
T cd01572 169 TEAVRRARAAAPFTLKIEVE--V-----ETLEQLKE----A-LEAGADIIMLDNM------------------SPEELRE 218 (268)
T ss_pred HHHHHHHHHhCCCCCeEEEE--E-----CCHHHHHH----H-HHcCCCEEEECCc------------------CHHHHHH
Confidence 345666676654 233332 2 23444333 2 3589999987431 1344555
Q ss_pred HHhcCC-CceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhCC
Q 020423 261 LLRDFP-DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNP 303 (326)
Q Consensus 261 i~~~~~-~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~dP 303 (326)
+.+... ++|+.++||| +++.+.++.+.|+|++.+|+....-|
T Consensus 219 ~~~~~~~~ipi~AiGGI-~~~ni~~~a~~Gvd~Iav~sl~~~a~ 261 (268)
T cd01572 219 AVALLKGRVLLEASGGI-TLENIRAYAETGVDYISVGALTHSAP 261 (268)
T ss_pred HHHHcCCCCcEEEECCC-CHHHHHHHHHcCCCEEEEEeeecCCC
Confidence 554332 6999999999 79999999999999999998655333
|
It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other. |
| >PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.053 Score=54.56 Aligned_cols=74 Identities=12% Similarity=0.057 Sum_probs=53.7
Q ss_pred hhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCC---hhhhhHHH
Q 020423 223 SLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAH---HVMVGRAA 299 (326)
Q Consensus 223 e~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD---~V~iGRal 299 (326)
.+.|+|+|.+..-... ... +..++..++.++++.+. .++||++-||| +++++.++++.|++ +|.+++++
T Consensus 407 ~~~gadyi~~gpif~t--~tk----~~~~~~g~~~~~~~~~~-~~~Pv~aiGGI-~~~~~~~~~~~G~~~~~gvav~~~i 478 (502)
T PLN02898 407 WKDGADYIGCGGVFPT--NTK----ANNKTIGLDGLREVCEA-SKLPVVAIGGI-SASNAASVMESGAPNLKGVAVVSAL 478 (502)
T ss_pred hhcCCCEEEECCeecC--CCC----CCCCCCCHHHHHHHHHc-CCCCEEEECCC-CHHHHHHHHHcCCCcCceEEEEeHH
Confidence 3579999987533211 000 11234457778777655 48999999999 59999999999988 99999999
Q ss_pred HhCCc
Q 020423 300 YQNPW 304 (326)
Q Consensus 300 l~dP~ 304 (326)
...++
T Consensus 479 ~~~~d 483 (502)
T PLN02898 479 FDQED 483 (502)
T ss_pred hcCCC
Confidence 86555
|
|
| >COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.45 Score=44.00 Aligned_cols=157 Identities=11% Similarity=0.068 Sum_probs=89.5
Q ss_pred CCCCCcEEEEe---cCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC-CCc
Q 020423 121 SPEQHPIVLQI---GGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVP 196 (326)
Q Consensus 121 ~~~~~piivQL---~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~-~~p 196 (326)
...+-|+++-+ +|. +.+.++.++.+.++|..+|.|-=-.- .+|.++.-+.-.-..+...+-+++++++. +.+
T Consensus 75 ~a~~lPv~vD~dtGfG~-~~nvartV~~~~~aG~agi~iEDq~~---pk~cgh~~gk~l~~~~e~v~rIkAa~~a~~~~~ 150 (289)
T COG2513 75 DAVDLPVLVDIDTGFGE-ALNVARTVRELEQAGAAGIHIEDQVG---PKRCGHLPGKELVSIDEMVDRIKAAVEARRDPD 150 (289)
T ss_pred hhcCCceEEeccCCCCc-HHHHHHHHHHHHHcCcceeeeeeccc---chhcCCCCCCCcCCHHHHHHHHHHHHHhccCCC
Confidence 34677898888 354 88889999999999999988842110 01122211222233444444444444443 455
Q ss_pred EEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEe---
Q 020423 197 VSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLN--- 273 (326)
Q Consensus 197 v~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~--- 273 (326)
+.+=-|....-...+++.++. ++.+.++|+|.|-..+... .+.+.++.+.. ++|+.+|
T Consensus 151 fvi~ARTda~~~~~ld~AI~R-a~AY~eAGAD~if~~al~~-----------------~e~i~~f~~av-~~pl~~N~t~ 211 (289)
T COG2513 151 FVIIARTDALLVEGLDDAIER-AQAYVEAGADAIFPEALTD-----------------LEEIRAFAEAV-PVPLPANITE 211 (289)
T ss_pred eEEEeehHHHHhccHHHHHHH-HHHHHHcCCcEEccccCCC-----------------HHHHHHHHHhc-CCCeeeEeec
Confidence 555445432222235555554 3456789999998765431 45566666664 5666554
Q ss_pred CCCCCHHHHHHHHHhCCChhhhhHHHH
Q 020423 274 GGINTVDEVNAALRKGAHHVMVGRAAY 300 (326)
Q Consensus 274 GgI~s~~da~~~l~~GaD~V~iGRall 300 (326)
.|-+-.-++.++-+.|...|..|-..+
T Consensus 212 ~g~tp~~~~~~L~~~Gv~~V~~~~~~~ 238 (289)
T COG2513 212 FGKTPLLTVAELAELGVKRVSYGLTAF 238 (289)
T ss_pred cCCCCCcCHHHHHhcCceEEEECcHHH
Confidence 343333344556668888887775544
|
|
| >cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.036 Score=52.63 Aligned_cols=60 Identities=20% Similarity=0.287 Sum_probs=45.2
Q ss_pred hhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhh
Q 020423 223 SLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMV 295 (326)
Q Consensus 223 e~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~i 295 (326)
.++|+|.|+++... |.. ....+.++++++..+++||++ |.+.+.+++.++++.|||+|.+
T Consensus 103 ~eagv~~I~vd~~~----G~~--------~~~~~~i~~ik~~~p~v~Vi~-G~v~t~~~A~~l~~aGaD~I~v 162 (325)
T cd00381 103 VEAGVDVIVIDSAH----GHS--------VYVIEMIKFIKKKYPNVDVIA-GNVVTAEAARDLIDAGADGVKV 162 (325)
T ss_pred HhcCCCEEEEECCC----CCc--------HHHHHHHHHHHHHCCCceEEE-CCCCCHHHHHHHHhcCCCEEEE
Confidence 35899999987532 110 112566777777666688887 9999999999999999999987
|
IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents. |
| >cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.012 Score=52.38 Aligned_cols=71 Identities=18% Similarity=0.105 Sum_probs=54.4
Q ss_pred HHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhH
Q 020423 218 IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGR 297 (326)
Q Consensus 218 ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGR 297 (326)
+++.++++|+++|++..-.....| ..+.+..+++. +++||+.-|+|.+.++++.+++.|||+|.++.
T Consensus 36 ~A~~~~~~GA~~l~v~~~~~~~~g------------~~~~~~~i~~~-v~iPi~~~~~i~~~~~v~~~~~~Gad~v~l~~ 102 (217)
T cd00331 36 IAKAYEKAGAAAISVLTEPKYFQG------------SLEDLRAVREA-VSLPVLRKDFIIDPYQIYEARAAGADAVLLIV 102 (217)
T ss_pred HHHHHHHcCCCEEEEEeCccccCC------------CHHHHHHHHHh-cCCCEEECCeecCHHHHHHHHHcCCCEEEEee
Confidence 456677899999999865432221 24556566554 48999999999999999999999999999887
Q ss_pred HHHh
Q 020423 298 AAYQ 301 (326)
Q Consensus 298 all~ 301 (326)
..+.
T Consensus 103 ~~~~ 106 (217)
T cd00331 103 AALD 106 (217)
T ss_pred ccCC
Confidence 7664
|
IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis. |
| >PRK14017 galactonate dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.2 Score=48.55 Aligned_cols=95 Identities=7% Similarity=-0.020 Sum_probs=56.6
Q ss_pred cEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCC
Q 020423 126 PIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGV 205 (326)
Q Consensus 126 piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~ 205 (326)
|+-..+...+++++.+.++.+.+.||..+-+..+-+.. ..+. ...++.-.+.++++|+.++..+.+.+-.
T Consensus 115 ~~~~~~~~~~~~~~~~~a~~~~~~Gf~~~KiKv~~~~~---~~~~-----~~~~~~d~~~i~avr~~~g~~~~l~vDa-- 184 (382)
T PRK14017 115 RVYSWIGGDRPADVAEAARARVERGFTAVKMNGTEELQ---YIDS-----PRKVDAAVARVAAVREAVGPEIGIGVDF-- 184 (382)
T ss_pred eEeEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCcCCcc---cccc-----HHHHHHHHHHHHHHHHHhCCCCeEEEEC--
Confidence 34444445678889888888888999999998642111 1110 0224566788999998875433332222
Q ss_pred CCCccHHHHHHHHHHHhhhCCccEEE
Q 020423 206 DDHDSYNQLCDFIYKVSSLSPTRHFI 231 (326)
Q Consensus 206 ~~~~~~~e~~~~ia~~le~~Gvd~I~ 231 (326)
...-+.++..++ .+.+++.|+.+|.
T Consensus 185 N~~w~~~~A~~~-~~~l~~~~~~~iE 209 (382)
T PRK14017 185 HGRVHKPMAKVL-AKELEPYRPMFIE 209 (382)
T ss_pred CCCCCHHHHHHH-HHhhcccCCCeEE
Confidence 222234454553 4456778888875
|
|
| >TIGR02317 prpB methylisocitrate lyase | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.086 Score=49.07 Aligned_cols=153 Identities=15% Similarity=0.131 Sum_probs=82.3
Q ss_pred HHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHHH
Q 020423 141 KATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYK 220 (326)
Q Consensus 141 ~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia~ 220 (326)
-.|+.++++||+++-+...+-.......|. | ++ ....+.+.++.|...+++||++-+-.|+-+..+ +.+. .+
T Consensus 24 ~SAri~e~aGf~Ai~~sg~~~a~~lG~pD~-g--~l-t~~e~~~~~~~I~~~~~iPviaD~d~GyG~~~~---v~~t-v~ 95 (285)
T TIGR02317 24 MAALLAERAGFEAIYLSGAAVAASLGLPDL-G--IT-TLDEVAEDARRITRVTDLPLLVDADTGFGEAFN---VART-VR 95 (285)
T ss_pred HHHHHHHHcCCCEEEEcHHHHHHhCCCCCC-C--CC-CHHHHHHHHHHHHhccCCCEEEECCCCCCCHHH---HHHH-HH
Confidence 456788889999999853221100011231 2 22 355566677777788899999998888765433 3332 34
Q ss_pred HhhhCCccEEEEecCCc-ccCCCCcCCcCCCCCc-cHHHHHHHHhcCCCceEEEeCCCCC-----HHHH----HHHHHhC
Q 020423 221 VSSLSPTRHFIIHSRKA-LLNGISPAENRTIPPL-KYEYYYALLRDFPDLTFTLNGGINT-----VDEV----NAALRKG 289 (326)
Q Consensus 221 ~le~~Gvd~I~v~~~~~-~~~g~~~~~~~~~~~~-~~~~i~~i~~~~~~iPVIa~GgI~s-----~~da----~~~l~~G 289 (326)
.++++|+..|++..... ...|+.. ....++.. ..+.++..++...+.+++.+..... .+++ ..+.+.|
T Consensus 96 ~~~~aG~agi~IEDq~~pK~cgh~~-g~~lv~~ee~~~kI~Aa~~a~~~~d~~IiARTDa~~~~g~deAI~Ra~ay~~AG 174 (285)
T TIGR02317 96 EMEDAGAAAVHIEDQVLPKRCGHLP-GKELVSREEMVDKIAAAVDAKRDEDFVIIARTDARAVEGLDAAIERAKAYVEAG 174 (285)
T ss_pred HHHHcCCeEEEEecCCCccccCCCC-CccccCHHHHHHHHHHHHHhccCCCEEEEEEcCcccccCHHHHHHHHHHHHHcC
Confidence 55689999999975432 1122211 00111211 1223333333322444555544332 3333 2334479
Q ss_pred CChhhhhHHHHhCCc
Q 020423 290 AHHVMVGRAAYQNPW 304 (326)
Q Consensus 290 aD~V~iGRall~dP~ 304 (326)
||+|.+=- +.+++
T Consensus 175 AD~vfi~g--~~~~e 187 (285)
T TIGR02317 175 ADMIFPEA--LTSLE 187 (285)
T ss_pred CCEEEeCC--CCCHH
Confidence 99999842 34444
|
Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus. |
| >cd03324 rTSbeta_L-fuconate_dehydratase Human rTS beta is encoded by the rTS gene which, through alternative RNA splicing, also encodes rTS alpha whose mRNA is complementary to thymidylate synthase mRNA | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.17 Score=49.78 Aligned_cols=79 Identities=10% Similarity=-0.028 Sum_probs=51.3
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHH
Q 020423 133 GSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYN 212 (326)
Q Consensus 133 g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~ 212 (326)
+.+++++.+.++...+.||..+-+..| .+++.-.+.++++|+.+|..+.+.+-.+ ..-+.+
T Consensus 194 ~~~~~~~~~~a~~~~~~Gf~~~KiKvg-----------------~~~~~d~~~v~avRe~vG~~~~L~vDaN--~~w~~~ 254 (415)
T cd03324 194 GYSDEKLRRLCKEALAQGFTHFKLKVG-----------------ADLEDDIRRCRLAREVIGPDNKLMIDAN--QRWDVP 254 (415)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeCC-----------------CCHHHHHHHHHHHHHhcCCCCeEEEECC--CCCCHH
Confidence 456788888888888899999999753 1244456788889988854443333332 212344
Q ss_pred HHHHHHHHHhhhCCccEEE
Q 020423 213 QLCDFIYKVSSLSPTRHFI 231 (326)
Q Consensus 213 e~~~~ia~~le~~Gvd~I~ 231 (326)
+..+ +.+.+++.++.++.
T Consensus 255 ~A~~-~~~~L~~~~l~~iE 272 (415)
T cd03324 255 EAIE-WVKQLAEFKPWWIE 272 (415)
T ss_pred HHHH-HHHHhhccCCCEEE
Confidence 5455 34566778888875
|
rTS beta expression is associated with the production of small molecules that appear to mediate the down-regulation of thymidylate synthase protein by a novel intercellular signaling mechanism. A member of this family, from Xanthomonas, has been characterized to be a L-fuconate dehydratase. rTS beta belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. |
| >PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.12 Score=46.85 Aligned_cols=151 Identities=13% Similarity=0.148 Sum_probs=90.7
Q ss_pred CCCcEEEEe---cCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC-CCcEE
Q 020423 123 EQHPIVLQI---GGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVS 198 (326)
Q Consensus 123 ~~~piivQL---~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~-~~pv~ 198 (326)
.+.|+++-+ +|+++.+..+..++..++|+.+|.|.=. |.+.=|..+. .++...+=+++++++. +..+.
T Consensus 68 ~~iPv~vD~d~GyG~~~~~v~~tv~~~~~aG~agi~IEDq-------~~~~~~~~l~-~~ee~~~kI~Aa~~a~~~~~~~ 139 (238)
T PF13714_consen 68 VSIPVIVDADTGYGNDPENVARTVRELERAGAAGINIEDQ-------RCGHGGKQLV-SPEEMVAKIRAAVDARRDPDFV 139 (238)
T ss_dssp SSSEEEEE-TTTSSSSHHHHHHHHHHHHHCT-SEEEEESB-------STTTSTT-B---HHHHHHHHHHHHHHHSSTTSE
T ss_pred hcCcEEEEcccccCchhHHHHHHHHHHHHcCCcEEEeecc-------ccCCCCCcee-CHHHHHHHHHHHHHhccCCeEE
Confidence 467888887 3566999999999999999999999633 1111133344 3444444444444332 22233
Q ss_pred EEeccCCC--CCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCC
Q 020423 199 VKCRIGVD--DHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 276 (326)
Q Consensus 199 vK~r~g~~--~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI 276 (326)
+=-|.... ....++|.++... .+.++|+|.|-+++... .+.++++.++. +.|+..+-+
T Consensus 140 I~ARTDa~~~~~~~~deaI~R~~-aY~eAGAD~ifi~~~~~-----------------~~~i~~~~~~~-~~Pl~v~~~- 199 (238)
T PF13714_consen 140 IIARTDAFLRAEEGLDEAIERAK-AYAEAGADMIFIPGLQS-----------------EEEIERIVKAV-DGPLNVNPG- 199 (238)
T ss_dssp EEEEECHHCHHHHHHHHHHHHHH-HHHHTT-SEEEETTSSS-----------------HHHHHHHHHHH-SSEEEEETT-
T ss_pred EEEeccccccCCCCHHHHHHHHH-HHHHcCCCEEEeCCCCC-----------------HHHHHHHHHhc-CCCEEEEcC-
Confidence 33344211 1234566666543 45679999999876421 34466777776 799877764
Q ss_pred CCHHHHHHHHHhCCChhhhhHHHHh
Q 020423 277 NTVDEVNAALRKGAHHVMVGRAAYQ 301 (326)
Q Consensus 277 ~s~~da~~~l~~GaD~V~iGRall~ 301 (326)
...-++.++.+.|+..|..|-.++.
T Consensus 200 ~~~~~~~eL~~lGv~~v~~~~~~~~ 224 (238)
T PF13714_consen 200 PGTLSAEELAELGVKRVSYGNSLLR 224 (238)
T ss_dssp SSSS-HHHHHHTTESEEEETSHHHH
T ss_pred CCCCCHHHHHHCCCcEEEEcHHHHH
Confidence 2236677788899999998877654
|
... |
| >PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.015 Score=58.33 Aligned_cols=64 Identities=17% Similarity=0.314 Sum_probs=49.2
Q ss_pred HHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhh
Q 020423 220 KVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVG 296 (326)
Q Consensus 220 ~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iG 296 (326)
+.+-++|+|.|++.... |.+ ...++.++++++.++++||++ |.|.|.+++..+++.|||+|-+|
T Consensus 247 ~~l~~ag~d~i~id~a~----G~s--------~~~~~~i~~ik~~~~~~~v~a-G~V~t~~~a~~~~~aGad~I~vg 310 (495)
T PTZ00314 247 AALIEAGVDVLVVDSSQ----GNS--------IYQIDMIKKLKSNYPHVDIIA-GNVVTADQAKNLIDAGADGLRIG 310 (495)
T ss_pred HHHHHCCCCEEEEecCC----CCc--------hHHHHHHHHHHhhCCCceEEE-CCcCCHHHHHHHHHcCCCEEEEC
Confidence 34456999999987532 211 123678888888877888777 99999999999999999999653
|
|
| >PRK08185 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.19 Score=46.77 Aligned_cols=151 Identities=14% Similarity=0.221 Sum_probs=87.3
Q ss_pred CCcEEEEecCC-CHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEec
Q 020423 124 QHPIVLQIGGS-NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCR 202 (326)
Q Consensus 124 ~~piivQL~g~-~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r 202 (326)
.-|+++.|-|. +.+. .+.+.++||+-|-+-.+. -+++.+.+...++++..+. .++++-..+-
T Consensus 68 ~vPV~lHLDHg~~~e~----i~~ai~~Gf~SVM~D~S~------------l~~eeNi~~t~~vv~~a~~-~gv~vE~ElG 130 (283)
T PRK08185 68 PVPFVIHLDHGATIED----VMRAIRCGFTSVMIDGSL------------LPYEENVALTKEVVELAHK-VGVSVEGELG 130 (283)
T ss_pred CCCEEEECCCCCCHHH----HHHHHHcCCCEEEEeCCC------------CCHHHHHHHHHHHHHHHHH-cCCeEEEEEe
Confidence 44666666543 2222 233445677776664321 1233556677777766543 3566554432
Q ss_pred c-CC-CC----------CccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceE
Q 020423 203 I-GV-DD----------HDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTF 270 (326)
Q Consensus 203 ~-g~-~~----------~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPV 270 (326)
. +. ++ ..+.++. .+..++.|+|++-++-++.. |.-.. ...+..+++.++++.+.. ++|+
T Consensus 131 ~vg~~e~~~~~~~~~~~~t~peea----~~f~~~TgvD~LAvaiGt~H--G~y~~--~~kp~L~~e~l~~I~~~~-~iPL 201 (283)
T PRK08185 131 TIGNTGTSIEGGVSEIIYTDPEQA----EDFVSRTGVDTLAVAIGTAH--GIYPK--DKKPELQMDLLKEINERV-DIPL 201 (283)
T ss_pred eccCcccccccccccccCCCHHHH----HHHHHhhCCCEEEeccCccc--CCcCC--CCCCCcCHHHHHHHHHhh-CCCE
Confidence 1 11 11 1134443 33445569999999654431 11000 012345689999887764 9999
Q ss_pred EEeCCCCCH-HHHHHHHHhCCChhhhhHHHH
Q 020423 271 TLNGGINTV-DEVNAALRKGAHHVMVGRAAY 300 (326)
Q Consensus 271 Ia~GgI~s~-~da~~~l~~GaD~V~iGRall 300 (326)
++-||+..+ +++.++++.|+.=|=++|.+.
T Consensus 202 VlHGgsg~~~e~~~~ai~~GI~KiNi~T~l~ 232 (283)
T PRK08185 202 VLHGGSANPDAEIAESVQLGVGKINISSDMK 232 (283)
T ss_pred EEECCCCCCHHHHHHHHHCCCeEEEeChHHH
Confidence 999999766 457788889988888887764
|
|
| >PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.053 Score=50.25 Aligned_cols=62 Identities=10% Similarity=0.114 Sum_probs=45.8
Q ss_pred hCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcC-CCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhC
Q 020423 224 LSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF-PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN 302 (326)
Q Consensus 224 ~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~-~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~d 302 (326)
++|+|+|-+..- ..+.++++++.. .++|+.++||| +.+.+.++.++|+|++.+|.....-
T Consensus 207 ~~gaD~I~LD~~------------------~~e~l~~~v~~~~~~i~leAsGGI-t~~ni~~~a~tGvD~Isvg~lt~s~ 267 (277)
T PRK05742 207 AAGADIVMLDEL------------------SLDDMREAVRLTAGRAKLEASGGI-NESTLRVIAETGVDYISIGAMTKDV 267 (277)
T ss_pred HcCCCEEEECCC------------------CHHHHHHHHHHhCCCCcEEEECCC-CHHHHHHHHHcCCCEEEEChhhcCC
Confidence 589999976311 134444444322 47999999999 7999999999999999999866554
Q ss_pred Cc
Q 020423 303 PW 304 (326)
Q Consensus 303 P~ 304 (326)
|+
T Consensus 268 ~~ 269 (277)
T PRK05742 268 KA 269 (277)
T ss_pred cc
Confidence 54
|
|
| >PRK13813 orotidine 5'-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.14 Score=45.35 Aligned_cols=124 Identities=16% Similarity=0.136 Sum_probs=73.0
Q ss_pred HHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccC-CCCCccHHHHHHHHHHHh
Q 020423 144 ELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIG-VDDHDSYNQLCDFIYKVS 222 (326)
Q Consensus 144 ~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g-~~~~~~~~e~~~~ia~~l 222 (326)
+.+.++|+|.|-+|.-. | .+.+.++++.+++ .|.++.+-+.+. +.......+..+.+....
T Consensus 74 ~~~~~~gad~vtvh~e~-----------g------~~~l~~~i~~~~~-~g~~~~v~~~~~~~~~~~~~~~~~~~v~~m~ 135 (215)
T PRK13813 74 EAVFEAGAWGIIVHGFT-----------G------RDSLKAVVEAAAE-SGGKVFVVVEMSHPGALEFIQPHADKLAKLA 135 (215)
T ss_pred HHHHhCCCCEEEEcCcC-----------C------HHHHHHHHHHHHh-cCCeEEEEEeCCCCCCCCCHHHHHHHHHHHH
Confidence 55667999999999631 1 1235566777654 356664433332 212222333344455555
Q ss_pred hhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCC-CceEEEeCCCCCH-HHHHHHHHhCCChhhhhHHHH
Q 020423 223 SLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFP-DLTFTLNGGINTV-DEVNAALRKGAHHVMVGRAAY 300 (326)
Q Consensus 223 e~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~-~iPVIa~GgI~s~-~da~~~l~~GaD~V~iGRall 300 (326)
.+.|.+...+... ..+.+.++++... ++. +..|||+.. ..+.++++.|+|.+.+||+++
T Consensus 136 ~e~G~~g~~~~~~------------------~~~~i~~l~~~~~~~~~-ivdgGI~~~g~~~~~~~~aGad~iV~Gr~I~ 196 (215)
T PRK13813 136 QEAGAFGVVAPAT------------------RPERVRYIRSRLGDELK-IISPGIGAQGGKAADAIKAGADYVIVGRSIY 196 (215)
T ss_pred HHhCCCeEEECCC------------------cchhHHHHHHhcCCCcE-EEeCCcCCCCCCHHHHHHcCCCEEEECcccC
Confidence 6678776543210 1233444443332 233 377999764 257888899999999999998
Q ss_pred hCCc
Q 020423 301 QNPW 304 (326)
Q Consensus 301 ~dP~ 304 (326)
..++
T Consensus 197 ~~~d 200 (215)
T PRK13813 197 NAAD 200 (215)
T ss_pred CCCC
Confidence 7766
|
|
| >PRK11320 prpB 2-methylisocitrate lyase; Provisional | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.1 Score=48.78 Aligned_cols=153 Identities=14% Similarity=0.126 Sum_probs=82.2
Q ss_pred HHHHHHHHCCCCEEEecCCCCC-CcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHH
Q 020423 141 KATELANAYNYDEINLNCGCPS-PKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIY 219 (326)
Q Consensus 141 ~aA~~a~~aG~d~Iein~g~P~-~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia 219 (326)
-.|+.++++||+++-+....-. ......|. | + -..+.+.+.++.|.+.+++||++-+-.|+-+.. .+.+.+
T Consensus 28 ~SAri~e~~Gf~ai~~Sg~~~a~~~lG~PD~-g--~-l~~~e~~~~~~~I~~~~~iPviaD~d~GyG~~~---~v~r~V- 99 (292)
T PRK11320 28 YHALLAERAGFKAIYLSGGGVAAASLGLPDL-G--I-TTLDDVLIDVRRITDACDLPLLVDIDTGFGGAF---NIARTV- 99 (292)
T ss_pred HHHHHHHHcCCCEEEeCHHHHHhHhcCCCCC-C--C-CCHHHHHHHHHHHHhccCCCEEEECCCCCCCHH---HHHHHH-
Confidence 4568889999999988542111 11111231 2 2 235566777778888889999999888876433 333433
Q ss_pred HHhhhCCccEEEEecCCc-ccCCCCcCCcCCCCCc-cHHHHHHHHhcCCCceEEEeCCCCC-----HHHH----HHHHHh
Q 020423 220 KVSSLSPTRHFIIHSRKA-LLNGISPAENRTIPPL-KYEYYYALLRDFPDLTFTLNGGINT-----VDEV----NAALRK 288 (326)
Q Consensus 220 ~~le~~Gvd~I~v~~~~~-~~~g~~~~~~~~~~~~-~~~~i~~i~~~~~~iPVIa~GgI~s-----~~da----~~~l~~ 288 (326)
+.++++|+..|++..... ...|+.. ....++.. ....++..++...+.+++.+..... .+++ ..+.+.
T Consensus 100 ~~~~~aGaagi~IEDq~~pK~cg~~~-~~~lv~~ee~~~kI~Aa~~a~~~~d~~IiARTDa~~~~g~deAI~Ra~aY~eA 178 (292)
T PRK11320 100 KSMIKAGAAAVHIEDQVGAKRCGHRP-NKEIVSQEEMVDRIKAAVDARTDPDFVIMARTDALAVEGLDAAIERAQAYVEA 178 (292)
T ss_pred HHHHHcCCeEEEEecCCCccccCCCC-CCcccCHHHHHHHHHHHHHhccCCCeEEEEecCcccccCHHHHHHHHHHHHHc
Confidence 455789999999975431 1223211 00111211 1123333333222344554444332 3332 334457
Q ss_pred CCChhhhhHHHHhCCc
Q 020423 289 GAHHVMVGRAAYQNPW 304 (326)
Q Consensus 289 GaD~V~iGRall~dP~ 304 (326)
|||+|.+-- +.+++
T Consensus 179 GAD~ifi~~--~~~~~ 192 (292)
T PRK11320 179 GADMIFPEA--MTELE 192 (292)
T ss_pred CCCEEEecC--CCCHH
Confidence 999999843 44555
|
|
| >PLN02424 ketopantoate hydroxymethyltransferase | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.43 Score=45.09 Aligned_cols=158 Identities=13% Similarity=0.042 Sum_probs=88.1
Q ss_pred CCCCChHHHHHHHHHcCCCcEEEecceeecc-cccccc---chhhhhh-----cCCCCCcEEE-Ee-c---CCCHHHHHH
Q 020423 76 MMDWTDNHYRTLARLISKHAWLYTEMLAAET-IIYQQG---NLDRFLA-----FSPEQHPIVL-QI-G---GSNLDNLAK 141 (326)
Q Consensus 76 M~~~s~~~~r~~~~~~Gg~gli~te~~~~~~-~~~~~~---~~~~~~~-----~~~~~~piiv-QL-~---g~~~~~f~~ 141 (326)
|.+.-|.....++.+.| +++|-++-....- +.+.+. ..+.++. ......++++ -+ + +.++++..+
T Consensus 39 mlTAyD~~sA~i~d~aG-vD~ILVGDSlgmv~lG~~~T~~Vtld~mi~H~~aV~Rga~~a~vVaDmPfgSY~~s~e~av~ 117 (332)
T PLN02424 39 MVTAYDYPSAVHVDSAG-IDVCLVGDSAAMVVHGHDTTLPITLDEMLVHCRAVARGANRPLLVGDLPFGSYESSTDQAVE 117 (332)
T ss_pred EEecCCHHHHHHHHHcC-CCEEEECCcHHHHhcCCCCCCCcCHHHHHHHHHHHhccCCCCEEEeCCCCCCCCCCHHHHHH
Confidence 34666777777777665 8887776432211 112211 1122221 2334556665 43 2 346888777
Q ss_pred HHHHH-HHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEecc---------CC----CC
Q 020423 142 ATELA-NAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRI---------GV----DD 207 (326)
Q Consensus 142 aA~~a-~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~---------g~----~~ 207 (326)
.|.++ +++|+++|.|-.|. ....++++++. ..++||.--+.+ |+ .+
T Consensus 118 nA~rl~~eaGa~aVKlEGg~-------------------~~~~~~I~~l~-~~GIPV~gHiGLtPQs~~~lGGykvqGr~ 177 (332)
T PLN02424 118 SAVRMLKEGGMDAVKLEGGS-------------------PSRVTAAKAIV-EAGIAVMGHVGLTPQAISVLGGFRPQGRT 177 (332)
T ss_pred HHHHHHHHhCCcEEEECCCc-------------------HHHHHHHHHHH-HcCCCEEEeecccceeehhhcCccccCCC
Confidence 77776 78999999995321 11234555554 458888732221 11 11
Q ss_pred CccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeC
Q 020423 208 HDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNG 274 (326)
Q Consensus 208 ~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~G 274 (326)
.+...++++ -++.++++|++.|.+.+-. .+..+++.+. ++||+|+-|
T Consensus 178 ~~~a~~li~-dA~ale~AGAf~ivLE~Vp------------------~~la~~It~~-l~IPtIGIG 224 (332)
T PLN02424 178 AESAVKVVE-TALALQEAGCFAVVLECVP------------------APVAAAITSA-LQIPTIGIG 224 (332)
T ss_pred HHHHHHHHH-HHHHHHHcCCcEEEEcCCc------------------HHHHHHHHHh-CCCCEEeec
Confidence 122344554 3567889999999876421 2344555555 499998765
|
|
| >cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.24 Score=46.16 Aligned_cols=106 Identities=14% Similarity=0.131 Sum_probs=56.3
Q ss_pred HHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHH
Q 020423 181 FVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYA 260 (326)
Q Consensus 181 ~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~ 260 (326)
++.++.+ .++..+.|+.+-+... +.++..+ .++.++++|+|+|.++-..+...+. +......+....+.+.+
T Consensus 77 ~~~~~~~-~~~~~~~p~ivsi~g~-----~~~~~~~-~a~~~~~~G~d~iElN~~cP~~~~~-g~~~~~~~~~~~eiv~~ 148 (296)
T cd04740 77 FLEELLP-WLREFGTPVIASIAGS-----TVEEFVE-VAEKLADAGADAIELNISCPNVKGG-GMAFGTDPEAVAEIVKA 148 (296)
T ss_pred HHHHHHH-HhhcCCCcEEEEEecC-----CHHHHHH-HHHHHHHcCCCEEEEECCCCCCCCC-cccccCCHHHHHHHHHH
Confidence 3333333 3444578988877652 2445544 4556678899999998543321111 11100111112344555
Q ss_pred HHhcCCCceEEE--eCCCCCHHH-HHHHHHhCCChhhh
Q 020423 261 LLRDFPDLTFTL--NGGINTVDE-VNAALRKGAHHVMV 295 (326)
Q Consensus 261 i~~~~~~iPVIa--~GgI~s~~d-a~~~l~~GaD~V~i 295 (326)
+++. .++||+. +.++.+..+ +..+.+.|+|+|.+
T Consensus 149 vr~~-~~~Pv~vKl~~~~~~~~~~a~~~~~~G~d~i~~ 185 (296)
T cd04740 149 VKKA-TDVPVIVKLTPNVTDIVEIARAAEEAGADGLTL 185 (296)
T ss_pred HHhc-cCCCEEEEeCCCchhHHHHHHHHHHcCCCEEEE
Confidence 5544 4889875 334444444 33455589998765
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. |
| >TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.15 Score=47.58 Aligned_cols=156 Identities=13% Similarity=0.069 Sum_probs=83.4
Q ss_pred HHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHHH
Q 020423 141 KATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYK 220 (326)
Q Consensus 141 ~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia~ 220 (326)
-.|+.++++||++|-+...+=.......| |+ + -..+.+.+.++.|.+.+++||++-+-.|+-+..++ .+.+ +
T Consensus 26 lSAri~e~aGf~ai~~ss~~va~slG~pD--~g-~-l~~~e~~~~~~~I~~~~~lPv~aD~d~GyG~~~~v---~~tV-~ 97 (290)
T TIGR02321 26 LVAKLAEQAGFGGIWGSGFELSASYAVPD--AN-I-LSMSTHLEMMRAIASTVSIPLIADIDTGFGNAVNV---HYVV-P 97 (290)
T ss_pred HHHHHHHHcCCCEEEECHHHHHHHCCCCC--cc-c-CCHHHHHHHHHHHHhccCCCEEEECCCCCCCcHHH---HHHH-H
Confidence 45778889999999885321110001122 11 1 23566677778888888999999998887654433 3323 3
Q ss_pred HhhhCCccEEEEecCC-cccCCCCcCC-cCCCCCc-cHHHHHHHHhcCCCceEEEeCCCCC------HHHH----HHHHH
Q 020423 221 VSSLSPTRHFIIHSRK-ALLNGISPAE-NRTIPPL-KYEYYYALLRDFPDLTFTLNGGINT------VDEV----NAALR 287 (326)
Q Consensus 221 ~le~~Gvd~I~v~~~~-~~~~g~~~~~-~~~~~~~-~~~~i~~i~~~~~~iPVIa~GgI~s------~~da----~~~l~ 287 (326)
.++++|+..|++.... ....|+.... ...++.. ..+.++..++...+.+++.+..... .+++ ..+.+
T Consensus 98 ~~~~aGvagi~IEDq~~pk~cg~~~~g~~~l~~~ee~~~kI~Aa~~a~~~~d~~I~ARTDa~~~~~g~deAI~Ra~aY~e 177 (290)
T TIGR02321 98 QYEAAGASAIVMEDKTFPKDTSLRTDGRQELVRIEEFQGKIAAATAARADRDFVVIARVEALIAGLGQQEAVRRGQAYEE 177 (290)
T ss_pred HHHHcCCeEEEEeCCCCCcccccccCCCccccCHHHHHHHHHHHHHhCCCCCEEEEEEeccccccCCHHHHHHHHHHHHH
Confidence 4568999999997542 1112221000 0011110 1123333333222344555444332 2332 33445
Q ss_pred hCCChhhhhHHHHhCCch
Q 020423 288 KGAHHVMVGRAAYQNPWY 305 (326)
Q Consensus 288 ~GaD~V~iGRall~dP~l 305 (326)
.|||.|.+- +.+.+++.
T Consensus 178 AGAD~ifv~-~~~~~~~e 194 (290)
T TIGR02321 178 AGADAILIH-SRQKTPDE 194 (290)
T ss_pred cCCCEEEec-CCCCCHHH
Confidence 899999983 23456664
|
This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2. |
| >cd03326 MR_like_1 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 1 | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.21 Score=48.54 Aligned_cols=117 Identities=13% Similarity=0.104 Sum_probs=70.8
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCC--cEEEEeccCCCCCccHH
Q 020423 135 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNV--PVSVKCRIGVDDHDSYN 212 (326)
Q Consensus 135 ~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~--pv~vK~r~g~~~~~~~~ 212 (326)
+++++.+.++...+.||..+-+..|. .+++.-.+.++++|+.++. .+.+-...+| +.+
T Consensus 160 ~~~~~~~~a~~~~~~Gf~~~Kikvg~----------------~~~~~di~~v~avRe~~G~~~~l~vDaN~~w----~~~ 219 (385)
T cd03326 160 DLGRLRDEMRRYLDRGYTVVKIKIGG----------------APLDEDLRRIEAALDVLGDGARLAVDANGRF----DLE 219 (385)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCC----------------CCHHHHHHHHHHHHHhcCCCCeEEEECCCCC----CHH
Confidence 56778888888888999999997541 1244456788888888753 3444333333 344
Q ss_pred HHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhC
Q 020423 213 QLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKG 289 (326)
Q Consensus 213 e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~G 289 (326)
+..+ +.+.+++.++.++. . ..++.+++.++++.+.. ++||.+.=.+.+..++.++++.+
T Consensus 220 ~A~~-~~~~l~~~~~~~iE----e------------P~~~~d~~~~~~L~~~~-~iPIa~gEs~~~~~~~~~li~~~ 278 (385)
T cd03326 220 TAIA-YAKALAPYGLRWYE----E------------PGDPLDYALQAELADHY-DGPIATGENLFSLQDARNLLRYG 278 (385)
T ss_pred HHHH-HHHHhhCcCCCEEE----C------------CCCccCHHHHHHHHhhC-CCCEEcCCCcCCHHHHHHHHHhC
Confidence 5555 34556778887774 0 11222345555555443 56666655566666666666644
|
Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown. |
| >cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.079 Score=48.49 Aligned_cols=106 Identities=13% Similarity=0.086 Sum_probs=62.4
Q ss_pred cCCCCCcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCc-EE
Q 020423 120 FSPEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVP-VS 198 (326)
Q Consensus 120 ~~~~~~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~p-v~ 198 (326)
.+..+.|+++ +...+ .-.|+.+.++|||.|-. |....... -+ |-....-..+.+...+++|++.++.| +.
T Consensus 7 l~~~~~~l~~-~~ayD----~~sA~l~e~aG~d~i~v--Gds~~~~~-lG-~pDt~~vtl~em~~~~~~V~r~~~~p~vi 77 (254)
T cd06557 7 MKKAGEKIVM-LTAYD----YPTAKLADEAGVDVILV--GDSLGMVV-LG-YDSTLPVTLDEMIYHTRAVRRGAPRALVV 77 (254)
T ss_pred HHhCCCcEEE-EeCCC----HHHHHHHHHcCCCEEEE--CHHHHHHH-cC-CCCCCCcCHHHHHHHHHHHHhcCCCCeEE
Confidence 3444555532 23334 34577888999999954 32211100 00 11111234667777788888888888 66
Q ss_pred EEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecC
Q 020423 199 VKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSR 235 (326)
Q Consensus 199 vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~ 235 (326)
+-+-.+.. ..+.++..+...++++++|++.|.+.++
T Consensus 78 aD~~fg~y-~~~~~~av~~a~r~~~~aGa~aVkiEd~ 113 (254)
T cd06557 78 ADMPFGSY-QTSPEQALRNAARLMKEAGADAVKLEGG 113 (254)
T ss_pred EeCCCCcc-cCCHHHHHHHHHHHHHHhCCeEEEEcCc
Confidence 65543311 1236666666777888899999999764
|
Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis. |
| >PRK07709 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.19 Score=46.71 Aligned_cols=149 Identities=11% Similarity=0.127 Sum_probs=93.7
Q ss_pred CcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEecc-
Q 020423 125 HPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRI- 203 (326)
Q Consensus 125 ~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~- 203 (326)
.|+++.|-|... -+...++.++||+-|-+-.+. . .++.+.+..+++++.... .|++|-.-+..
T Consensus 78 VPV~lHLDHg~~---~e~i~~ai~~GftSVM~DgS~-l-----------p~eeNi~~Trevv~~Ah~-~gv~VEaElG~i 141 (285)
T PRK07709 78 VPVAIHLDHGSS---FEKCKEAIDAGFTSVMIDASH-H-----------PFEENVETTKKVVEYAHA-RNVSVEAELGTV 141 (285)
T ss_pred CcEEEECCCCCC---HHHHHHHHHcCCCEEEEeCCC-C-----------CHHHHHHHHHHHHHHHHH-cCCEEEEEEecc
Confidence 477777754331 122335566777777775431 1 233667888888877643 35555544321
Q ss_pred -CCCC--------CccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeC
Q 020423 204 -GVDD--------HDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNG 274 (326)
Q Consensus 204 -g~~~--------~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~G 274 (326)
|.++ ..++++..+ ..++.|+|.+-++-++.. +-+. ..|.++++.++++.+.. ++|++.=|
T Consensus 142 gg~ed~~~~~~~~yT~peeA~~----Fv~~TgvD~LAvaiGt~H-G~Y~-----~~p~L~~~~L~~I~~~~-~iPLVLHG 210 (285)
T PRK07709 142 GGQEDDVIAEGVIYADPAECKH----LVEATGIDCLAPALGSVH-GPYK-----GEPNLGFAEMEQVRDFT-GVPLVLHG 210 (285)
T ss_pred CCccCCcccccccCCCHHHHHH----HHHHhCCCEEEEeecccc-cCcC-----CCCccCHHHHHHHHHHH-CCCEEEeC
Confidence 2211 124555444 445689999999866541 1111 12456799999987765 99999999
Q ss_pred CCCCH-HHHHHHHHhCCChhhhhHHHH
Q 020423 275 GINTV-DEVNAALRKGAHHVMVGRAAY 300 (326)
Q Consensus 275 gI~s~-~da~~~l~~GaD~V~iGRall 300 (326)
|-..+ +++.++++.|+.=|=+++.+-
T Consensus 211 gSG~~~e~~~~ai~~Gi~KiNi~T~l~ 237 (285)
T PRK07709 211 GTGIPTADIEKAISLGTSKINVNTENQ 237 (285)
T ss_pred CCCCCHHHHHHHHHcCCeEEEeChHHH
Confidence 98877 668889999988888887763
|
|
| >cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.11 Score=47.25 Aligned_cols=147 Identities=17% Similarity=0.139 Sum_probs=79.9
Q ss_pred HHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHHH
Q 020423 141 KATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYK 220 (326)
Q Consensus 141 ~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia~ 220 (326)
-.|+.++++|||.+=+-...-.......|. + .-..+.+.+.++.|...+..|+++-+..|+.+. ++..+.+.
T Consensus 20 ~sA~~~e~~G~~ai~~s~~~~~~s~G~pD~-~---~~~~~e~~~~~~~I~~~~~~Pv~~D~~~G~g~~---~~~~~~v~- 91 (243)
T cd00377 20 LSARLAERAGFKAIYTSGAGVAASLGLPDG-G---LLTLDEVLAAVRRIARAVDLPVIADADTGYGNA---LNVARTVR- 91 (243)
T ss_pred HHHHHHHHcCCCEEEeccHHHHHhcCCCCC-C---cCCHHHHHHHHHHHHhhccCCEEEEcCCCCCCH---HHHHHHHH-
Confidence 357778889999998853221100011111 1 123566777777887888999999998886543 34444333
Q ss_pred HhhhCCccEEEEecCCc-ccCCCCcCCcCCCCCc-cHHHHHHHHhcC---CCceEEEe-----CCCCCHHHH----HHHH
Q 020423 221 VSSLSPTRHFIIHSRKA-LLNGISPAENRTIPPL-KYEYYYALLRDF---PDLTFTLN-----GGINTVDEV----NAAL 286 (326)
Q Consensus 221 ~le~~Gvd~I~v~~~~~-~~~g~~~~~~~~~~~~-~~~~i~~i~~~~---~~iPVIa~-----GgI~s~~da----~~~l 286 (326)
.+.++|++.|++.+... ...|..+ +....++. ..+.++..++.. ++++|++- -+-.+.+++ ..+.
T Consensus 92 ~~~~~G~~gv~iED~~~~k~~g~~~-~~~~~~~ee~~~ki~aa~~a~~~~~~~~IiARTDa~~~~~~~~~eai~Ra~ay~ 170 (243)
T cd00377 92 ELEEAGAAGIHIEDQVGPKKCGHHG-GKVLVPIEEFVAKIKAARDARDDLPDFVIIARTDALLAGEEGLDEAIERAKAYA 170 (243)
T ss_pred HHHHcCCEEEEEecCCCCccccCCC-CCeecCHHHHHHHHHHHHHHHhccCCeEEEEEcCchhccCCCHHHHHHHHHHHH
Confidence 44569999999965532 1112211 01111111 122333333222 36777776 221233443 3344
Q ss_pred HhCCChhhhh
Q 020423 287 RKGAHHVMVG 296 (326)
Q Consensus 287 ~~GaD~V~iG 296 (326)
+.|||+|++=
T Consensus 171 ~AGAD~v~v~ 180 (243)
T cd00377 171 EAGADGIFVE 180 (243)
T ss_pred HcCCCEEEeC
Confidence 5899999985
|
Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to |
| >PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.026 Score=53.25 Aligned_cols=66 Identities=21% Similarity=0.243 Sum_probs=48.4
Q ss_pred HHHHhh-hCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhh
Q 020423 218 IYKVSS-LSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVG 296 (326)
Q Consensus 218 ia~~le-~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iG 296 (326)
+.++++ .+|+|+|++.... |++. ...+.++.+++.+++++ |..|.|.|++.++++++.|||+|=||
T Consensus 113 ~~~L~~~~~g~D~iviD~Ah----Ghs~--------~~i~~ik~ik~~~P~~~-vIaGNV~T~e~a~~Li~aGAD~vKVG 179 (346)
T PRK05096 113 TKQILALSPALNFICIDVAN----GYSE--------HFVQFVAKAREAWPDKT-ICAGNVVTGEMVEELILSGADIVKVG 179 (346)
T ss_pred HHHHHhcCCCCCEEEEECCC----CcHH--------HHHHHHHHHHHhCCCCc-EEEecccCHHHHHHHHHcCCCEEEEc
Confidence 344444 3799999997543 2211 12567888888888887 56799999999999999999997544
|
|
| >PRK07084 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.34 Score=45.70 Aligned_cols=155 Identities=12% Similarity=0.196 Sum_probs=91.2
Q ss_pred CcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEecc-
Q 020423 125 HPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRI- 203 (326)
Q Consensus 125 ~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~- 203 (326)
.|++++|-|..-. +..+++.++||+-|-+-.+. . .++.+.+..+++++..+. .|+.|-.-+-.
T Consensus 86 VPV~lHLDHg~~~---e~i~~ai~~GftSVMiD~S~-l-----------p~eeNI~~T~evv~~Ah~-~GvsVEaElG~i 149 (321)
T PRK07084 86 IPIVLHLDHGDSF---ELCKDCIDSGFSSVMIDGSH-L-----------PYEENVALTKKVVEYAHQ-FDVTVEGELGVL 149 (321)
T ss_pred CcEEEECCCCCCH---HHHHHHHHcCCCEEEeeCCC-C-----------CHHHHHHHHHHHHHHHHH-cCCeEEEEEeee
Confidence 4666666543211 12355556677766665321 1 233667778888877643 35544433221
Q ss_pred -CCCC--------CccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeC
Q 020423 204 -GVDD--------HDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNG 274 (326)
Q Consensus 204 -g~~~--------~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~G 274 (326)
|.++ ..+.++..+ .+++.|+|.+-++-++.. +-+........+.++++.++++.+...++|++.=|
T Consensus 150 gg~ed~~~~~~~~~T~peeA~~----Fv~~TgvD~LAvaiGt~H-G~Y~~~~~~~~p~Ld~d~L~~I~~~~~~vPLVLHG 224 (321)
T PRK07084 150 AGVEDEVSAEHHTYTQPEEVED----FVKKTGVDSLAISIGTSH-GAYKFKPGQCPPPLRFDILEEIEKRIPGFPIVLHG 224 (321)
T ss_pred cCccCCccCcccccCCHHHHHH----HHHHhCCCEEeecccccc-ccccCCCCCCCCccCHHHHHHHHHhcCCCCEEEeC
Confidence 1111 123444444 445689999999866541 11111000002457899999888775479999999
Q ss_pred CCCCH----------------------HHHHHHHHhCCChhhhhHHHH
Q 020423 275 GINTV----------------------DEVNAALRKGAHHVMVGRAAY 300 (326)
Q Consensus 275 gI~s~----------------------~da~~~l~~GaD~V~iGRall 300 (326)
|-..+ +++.++++.|+.=|-+++.+-
T Consensus 225 gSg~~~~~~~~~~~~g~~~~~~~Gi~~e~~~kai~~GI~KINi~Tdl~ 272 (321)
T PRK07084 225 SSSVPQEYVKTINEYGGKLKDAIGIPEEQLRKAAKSAVCKINIDSDGR 272 (321)
T ss_pred CCCCcHHHHHHHHHhcCccccCCCCCHHHHHHHHHcCCceeccchHHH
Confidence 87433 788999999988888888764
|
|
| >PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: |
Back alignment and domain information |
|---|
Probab=95.78 E-value=0.25 Score=42.96 Aligned_cols=112 Identities=13% Similarity=0.112 Sum_probs=65.5
Q ss_pred HHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCC-----ccHHHH
Q 020423 140 AKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDH-----DSYNQL 214 (326)
Q Consensus 140 ~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~-----~~~~e~ 214 (326)
.+.|+.+.+.|+.+|-+|. .+-+++||+.++.|++==+....++. .++++.
T Consensus 2 ~~mA~Aa~~gGA~giR~~~------------------------~~dI~aik~~v~lPIIGi~K~~y~~~~V~ITPT~~ev 57 (192)
T PF04131_consen 2 ARMAKAAEEGGAVGIRANG------------------------VEDIRAIKKAVDLPIIGIIKRDYPDSDVYITPTLKEV 57 (192)
T ss_dssp HHHHHHHHHCT-SEEEEES------------------------HHHHHHHHTTB-S-EEEE-B-SBTTSS--BS-SHHHH
T ss_pred HHHHHHHHHCCceEEEcCC------------------------HHHHHHHHHhcCCCEEEEEeccCCCCCeEECCCHHHH
Confidence 4667778888988988862 13367788999999752222222221 234443
Q ss_pred HHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhh
Q 020423 215 CDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVM 294 (326)
Q Consensus 215 ~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~ 294 (326)
..+ -++|+|.|-+.+.... .|..-.+++.++++++ +..-.+|.|.|++..+.+.|+|.|.
T Consensus 58 ----~~l-~~aGadIIAlDaT~R~-----------Rp~~l~~li~~i~~~~----~l~MADist~ee~~~A~~~G~D~I~ 117 (192)
T PF04131_consen 58 ----DAL-AEAGADIIALDATDRP-----------RPETLEELIREIKEKY----QLVMADISTLEEAINAAELGFDIIG 117 (192)
T ss_dssp ----HHH-HHCT-SEEEEE-SSSS------------SS-HHHHHHHHHHCT----SEEEEE-SSHHHHHHHHHTT-SEEE
T ss_pred ----HHH-HHcCCCEEEEecCCCC-----------CCcCHHHHHHHHHHhC----cEEeeecCCHHHHHHHHHcCCCEEE
Confidence 223 3599999999864421 1112256677777665 4555688999999999999999875
Q ss_pred h
Q 020423 295 V 295 (326)
Q Consensus 295 i 295 (326)
-
T Consensus 118 T 118 (192)
T PF04131_consen 118 T 118 (192)
T ss_dssp -
T ss_pred c
Confidence 3
|
; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B. |
| >TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.22 Score=46.33 Aligned_cols=151 Identities=14% Similarity=0.171 Sum_probs=96.0
Q ss_pred CCCcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEec
Q 020423 123 EQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCR 202 (326)
Q Consensus 123 ~~~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r 202 (326)
..-|+.++|-|..- | +..+++.++||+-|-+-.+. . .++.+.+...++++..+. .|++|-.-+.
T Consensus 71 ~~VPValHLDHg~~--~-e~i~~ai~~GFtSVM~DgS~-l-----------p~eeNi~~T~~vv~~Ah~-~gv~VEaElG 134 (282)
T TIGR01858 71 YNMPLALHLDHHES--L-DDIRQKVHAGVRSAMIDGSH-F-----------PFAQNVKLVKEVVDFCHR-QDCSVEAELG 134 (282)
T ss_pred CCCCEEEECCCCCC--H-HHHHHHHHcCCCEEeecCCC-C-----------CHHHHHHHHHHHHHHHHH-cCCeEEEEEE
Confidence 34578888765432 1 33566777888888886431 1 134677888888887654 3555444332
Q ss_pred c--CCCC----------CccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceE
Q 020423 203 I--GVDD----------HDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTF 270 (326)
Q Consensus 203 ~--g~~~----------~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPV 270 (326)
. |.++ ..+.++.. +..++.|+|.+-|+-++.. +.+. ..|.++++.++++.+.. ++|+
T Consensus 135 ~vgg~e~~~~~~~~~~~~T~peea~----~Fv~~TgvD~LAvaiGt~H-G~yk-----~~p~Ldf~~L~~I~~~~-~iPL 203 (282)
T TIGR01858 135 RLGGVEDDLSVDEEDALYTDPQEAK----EFVEATGVDSLAVAIGTAH-GLYK-----KTPKLDFDRLAEIREVV-DVPL 203 (282)
T ss_pred ecCCccCCCccccchhccCCHHHHH----HHHHHHCcCEEecccCccc-cCcC-----CCCccCHHHHHHHHHHh-CCCe
Confidence 1 1111 11334443 3456789999999876641 1111 12457799999997765 9999
Q ss_pred EEeCCCCCHH-HHHHHHHhCCChhhhhHHHH
Q 020423 271 TLNGGINTVD-EVNAALRKGAHHVMVGRAAY 300 (326)
Q Consensus 271 Ia~GgI~s~~-da~~~l~~GaD~V~iGRall 300 (326)
+.=||-..++ ++.++++.|..=|=+++.+.
T Consensus 204 VlHGgSG~~~e~~~~ai~~Gi~KiNi~T~l~ 234 (282)
T TIGR01858 204 VLHGASDVPDEDVRRTIELGICKVNVATELK 234 (282)
T ss_pred EEecCCCCCHHHHHHHHHcCCeEEEeCcHHH
Confidence 9999877664 57778889988888888764
|
This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4. |
| >PRK08610 fructose-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.24 Score=46.10 Aligned_cols=148 Identities=11% Similarity=0.149 Sum_probs=93.3
Q ss_pred CcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEecc-
Q 020423 125 HPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRI- 203 (326)
Q Consensus 125 ~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~- 203 (326)
.|+.+.|-|... | +..+++.++||+-|-+-.+. . .++.+.+...++++..+ ..|++|-.-+..
T Consensus 78 vPV~lHLDHg~~--~-e~i~~ai~~GftSVM~DgS~-l-----------~~eeNi~~T~~vve~Ah-~~gv~VEaElG~v 141 (286)
T PRK08610 78 IPVAIHLDHGSS--F-EKCKEAIDAGFTSVMIDASH-S-----------PFEENVATTKKVVEYAH-EKGVSVEAELGTV 141 (286)
T ss_pred CCEEEECCCCCC--H-HHHHHHHHcCCCEEEEeCCC-C-----------CHHHHHHHHHHHHHHHH-HcCCEEEEEEecc
Confidence 477777755432 1 22245667788877775431 1 23467788888887764 345555443321
Q ss_pred -CCCC--------CccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeC
Q 020423 204 -GVDD--------HDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNG 274 (326)
Q Consensus 204 -g~~~--------~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~G 274 (326)
|.++ ..++++..+ ..++.|+|.+-|+-++.. +-+. ..|.++++.++++.+.. ++|++.=|
T Consensus 142 gg~ed~~~~~~~~yT~peea~~----Fv~~TgvD~LAvaiGt~H-G~Y~-----~~p~Ld~~~L~~I~~~~-~vPLVLHG 210 (286)
T PRK08610 142 GGQEDDVVADGIIYADPKECQE----LVEKTGIDALAPALGSVH-GPYK-----GEPKLGFKEMEEIGLST-GLPLVLHG 210 (286)
T ss_pred CCccCCCCCcccccCCHHHHHH----HHHHHCCCEEEeeccccc-cccC-----CCCCCCHHHHHHHHHHH-CCCEEEeC
Confidence 2211 124555444 445689999999866541 1111 12456799999987765 99999999
Q ss_pred CCCCH-HHHHHHHHhCCChhhhhHHH
Q 020423 275 GINTV-DEVNAALRKGAHHVMVGRAA 299 (326)
Q Consensus 275 gI~s~-~da~~~l~~GaD~V~iGRal 299 (326)
|-..+ +++.++++.|+.=|=+++.+
T Consensus 211 gSG~~~e~~~~ai~~GI~KiNi~T~l 236 (286)
T PRK08610 211 GTGIPTKDIQKAIPFGTAKINVNTEN 236 (286)
T ss_pred CCCCCHHHHHHHHHCCCeEEEeccHH
Confidence 98877 56888999998888777775
|
|
| >COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily [Cell envelope biogenesis, outer membrane / General function prediction only] | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.18 Score=48.56 Aligned_cols=125 Identities=11% Similarity=0.056 Sum_probs=78.5
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHH
Q 020423 135 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQL 214 (326)
Q Consensus 135 ~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~ 214 (326)
..+.+.++++.+.+.||+.+-+..+++.. ..-.+.++++|++++..+.+.+-. ...-+.++.
T Consensus 143 ~~e~~~~~~~~~~~~G~~~~Klk~g~~~~----------------~~d~~~v~avRe~~g~~~~l~iDa--n~~~~~~~A 204 (372)
T COG4948 143 PEEMAAEAARALVELGFKALKLKVGVGDG----------------DEDLERVRALREAVGDDVRLMVDA--NGGWTLEEA 204 (372)
T ss_pred CHHHHHHHHHHHHhcCCceEEecCCCCch----------------HHHHHHHHHHHHHhCCCceEEEeC--CCCcCHHHH
Confidence 67888899999999999999998876642 144677888888876443333222 222233334
Q ss_pred HHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhC-CChh
Q 020423 215 CDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKG-AHHV 293 (326)
Q Consensus 215 ~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~G-aD~V 293 (326)
.+ +++.+++.++.++. . ..++-+.+.+.++.+.. .+||.+.=-+.+..++.++++.| +|.|
T Consensus 205 ~~-~~~~l~~~~l~~iE----e------------P~~~~d~~~~~~l~~~~-~~PIa~gEs~~~~~~~~~l~~~~a~div 266 (372)
T COG4948 205 IR-LARALEEYGLEWIE----E------------PLPPDDLEGLRELRAAT-STPIAAGESVYTRWDFRRLLEAGAVDIV 266 (372)
T ss_pred HH-HHHHhcccCcceEE----C------------CCCccCHHHHHHHHhcC-CCCEecCcccccHHHHHHHHHcCCCCee
Confidence 44 35566777877774 1 12233355555555543 47777666777777777777755 6666
Q ss_pred hh
Q 020423 294 MV 295 (326)
Q Consensus 294 ~i 295 (326)
++
T Consensus 267 ~~ 268 (372)
T COG4948 267 QP 268 (372)
T ss_pred cC
Confidence 55
|
|
| >cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.067 Score=49.50 Aligned_cols=60 Identities=15% Similarity=0.180 Sum_probs=42.0
Q ss_pred hCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHH-HHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHH
Q 020423 224 LSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYA-LLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAA 299 (326)
Q Consensus 224 ~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~-i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRal 299 (326)
+.|+|+|-+..-. +.....+.+ +.+..+++|++++||| +++.+.++.+.|+|+|+++.-.
T Consensus 201 ~~gaD~I~ld~~~---------------p~~l~~~~~~~~~~~~~i~i~AsGGI-~~~ni~~~~~~Gvd~I~vsai~ 261 (272)
T cd01573 201 EAGADILQLDKFS---------------PEELAELVPKLRSLAPPVLLAAAGGI-NIENAAAYAAAGADILVTSAPY 261 (272)
T ss_pred HcCCCEEEECCCC---------------HHHHHHHHHHHhccCCCceEEEECCC-CHHHHHHHHHcCCcEEEEChhh
Confidence 5899999875321 111222222 3322357999999999 8999999999999999666543
|
In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. |
| >PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.78 Score=42.23 Aligned_cols=156 Identities=13% Similarity=0.124 Sum_probs=82.8
Q ss_pred CCCChHHHHHHHHHcCCCcEEEecceee-cccccccc---chhhhhh-----cCCCCC-cEEEEec-C---CCHHHHHH-
Q 020423 77 MDWTDNHYRTLARLISKHAWLYTEMLAA-ETIIYQQG---NLDRFLA-----FSPEQH-PIVLQIG-G---SNLDNLAK- 141 (326)
Q Consensus 77 ~~~s~~~~r~~~~~~Gg~gli~te~~~~-~~~~~~~~---~~~~~~~-----~~~~~~-piivQL~-g---~~~~~f~~- 141 (326)
.+.-|.....++.+.| +..+.++.... ..+.+.+. ..+.++. ....+. ++++-+- + .++++..+
T Consensus 20 ~tayD~~sArl~e~aG-~d~i~vGds~~~~~lG~~Dt~~vtl~em~~h~~~V~r~~~~p~vvaD~pfg~y~~~~~~av~~ 98 (264)
T PRK00311 20 LTAYDYPFAKLFDEAG-VDVILVGDSLGMVVLGYDSTLPVTLDDMIYHTKAVARGAPRALVVADMPFGSYQASPEQALRN 98 (264)
T ss_pred EeCCCHHHHHHHHHcC-CCEEEECHHHHHHHcCCCCCCCcCHHHHHHHHHHHHhcCCCCcEEEeCCCCCccCCHHHHHHH
Confidence 3556667776666665 88888763211 11222221 1122211 122334 3666662 2 35666444
Q ss_pred HHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEe--ccCC-----------CCC
Q 020423 142 ATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKC--RIGV-----------DDH 208 (326)
Q Consensus 142 aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~--r~g~-----------~~~ 208 (326)
+.+..+++|+++|.|--+ +...+.++++++ .++||.--+ .+.. ...
T Consensus 99 a~r~~~~aGa~aVkiEdg--------------------~~~~~~I~al~~-agIpV~gHiGL~pq~~~~~gg~~i~grt~ 157 (264)
T PRK00311 99 AGRLMKEAGAHAVKLEGG--------------------EEVAETIKRLVE-RGIPVMGHLGLTPQSVNVLGGYKVQGRDE 157 (264)
T ss_pred HHHHHHHhCCeEEEEcCc--------------------HHHHHHHHHHHH-CCCCEeeeecccceeecccCCeeeecCCH
Confidence 455556699999998421 123455555543 377874111 1110 111
Q ss_pred ccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeC
Q 020423 209 DSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNG 274 (326)
Q Consensus 209 ~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~G 274 (326)
+..+++++. ++.++++|+|.|.+.+-. -+..+++.++. ++|+|+-|
T Consensus 158 ~~a~~~i~r-a~a~~eAGA~~i~lE~v~------------------~~~~~~i~~~l-~iP~igiG 203 (264)
T PRK00311 158 EAAEKLLED-AKALEEAGAFALVLECVP------------------AELAKEITEAL-SIPTIGIG 203 (264)
T ss_pred HHHHHHHHH-HHHHHHCCCCEEEEcCCC------------------HHHHHHHHHhC-CCCEEEec
Confidence 224455553 456788999999876421 24556666664 89998765
|
|
| >cd00945 Aldolase_Class_I Class I aldolases | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.35 Score=41.52 Aligned_cols=130 Identities=16% Similarity=0.102 Sum_probs=77.7
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC---CCcEEEEeccCCCCCccH
Q 020423 135 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT---NVPVSVKCRIGVDDHDSY 211 (326)
Q Consensus 135 ~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~---~~pv~vK~r~g~~~~~~~ 211 (326)
+.+.+.+.++.+.+.|+|+|.++. ++++.+++.+ +.|+.+++..+... ...
T Consensus 11 d~~~~~~~~~~~~~~gv~gi~~~g-------------------------~~i~~~~~~~~~~~~~v~~~v~~~~~~-~~~ 64 (201)
T cd00945 11 TLEDIAKLCDEAIEYGFAAVCVNP-------------------------GYVRLAADALAGSDVPVIVVVGFPTGL-TTT 64 (201)
T ss_pred CHHHHHHHHHHHHHhCCcEEEECH-------------------------HHHHHHHHHhCCCCCeEEEEecCCCCC-CcH
Confidence 778899999999999999999963 3444444433 37888887664322 224
Q ss_pred HHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcC-CCceEEEe---CCCCCHHHHHHHH-
Q 020423 212 NQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF-PDLTFTLN---GGINTVDEVNAAL- 286 (326)
Q Consensus 212 ~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~-~~iPVIa~---GgI~s~~da~~~l- 286 (326)
++..+. ++...+.|+|.+.+..-... ..+. ......+.++++.+.. .++||+.- +...+++...++.
T Consensus 65 ~~~~~~-a~~a~~~Gad~i~v~~~~~~--~~~~-----~~~~~~~~~~~i~~~~~~~~pv~iy~~p~~~~~~~~~~~~~~ 136 (201)
T cd00945 65 EVKVAE-VEEAIDLGADEIDVVINIGS--LKEG-----DWEEVLEEIAAVVEAADGGLPLKVILETRGLKTADEIAKAAR 136 (201)
T ss_pred HHHHHH-HHHHHHcCCCEEEEeccHHH--HhCC-----CHHHHHHHHHHHHHHhcCCceEEEEEECCCCCCHHHHHHHHH
Confidence 445553 34556799999998743210 0000 0011245556666553 37887652 2223677666542
Q ss_pred ---HhCCChhhhhHH
Q 020423 287 ---RKGAHHVMVGRA 298 (326)
Q Consensus 287 ---~~GaD~V~iGRa 298 (326)
+.|+|+|-...+
T Consensus 137 ~~~~~g~~~iK~~~~ 151 (201)
T cd00945 137 IAAEAGADFIKTSTG 151 (201)
T ss_pred HHHHhCCCEEEeCCC
Confidence 378888866543
|
The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin. |
| >cd03327 MR_like_2 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 2 | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.25 Score=47.08 Aligned_cols=86 Identities=12% Similarity=0.022 Sum_probs=52.2
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHH
Q 020423 133 GSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYN 212 (326)
Q Consensus 133 g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~ 212 (326)
..+++++.+.++.+.+.||..+-+..+... ...+ ...+.-.+.++++|+.++..+.+.+-.+ ..-+.+
T Consensus 118 ~~~~~~~~~~a~~~~~~Gf~~~Kikvg~~~-~~~~---------~~~~~d~~~v~avr~~~g~~~~l~vDan--~~~~~~ 185 (341)
T cd03327 118 PTDLDELPDEAKEYLKEGYRGMKMRFGYGP-SDGH---------AGLRKNVELVRAIREAVGYDVDLMLDCY--MSWNLN 185 (341)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEECCCCCC-Ccch---------HHHHHHHHHHHHHHHHhCCCCcEEEECC--CCCCHH
Confidence 357888988888888899999999875310 0000 2346667888999988754333332222 112344
Q ss_pred HHHHHHHHHhhhCCccEEE
Q 020423 213 QLCDFIYKVSSLSPTRHFI 231 (326)
Q Consensus 213 e~~~~ia~~le~~Gvd~I~ 231 (326)
+..+ +.+.+++.++.++.
T Consensus 186 ~A~~-~~~~l~~~~~~~iE 203 (341)
T cd03327 186 YAIK-MARALEKYELRWIE 203 (341)
T ss_pred HHHH-HHHHhhhcCCcccc
Confidence 4444 34556667777664
|
Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown. |
| >PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.29 Score=45.07 Aligned_cols=109 Identities=14% Similarity=0.078 Sum_probs=62.3
Q ss_pred hhhcCCCCCcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCc
Q 020423 117 FLAFSPEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVP 196 (326)
Q Consensus 117 ~~~~~~~~~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~p 196 (326)
+.+.+..+.|+++ +...+ .-.|+.+.++|||.|-+ |.....+. .+ |-....-..+.+...+++|++.++.|
T Consensus 7 lr~~~~~g~~i~~-~tayD----~~sArl~e~aG~d~i~v--Gds~~~~~-lG-~~Dt~~vtl~em~~h~~~V~r~~~~p 77 (264)
T PRK00311 7 LQKMKQEGEKIVM-LTAYD----YPFAKLFDEAGVDVILV--GDSLGMVV-LG-YDSTLPVTLDDMIYHTKAVARGAPRA 77 (264)
T ss_pred HHHHHhCCCCEEE-EeCCC----HHHHHHHHHcCCCEEEE--CHHHHHHH-cC-CCCCCCcCHHHHHHHHHHHHhcCCCC
Confidence 3334555555532 23334 34678889999999964 32111000 00 11111234566777778877777776
Q ss_pred -EEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecC
Q 020423 197 -VSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSR 235 (326)
Q Consensus 197 -v~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~ 235 (326)
+.+-+-.+.. ..+.++..+...++++++|++.+.+.++
T Consensus 78 ~vvaD~pfg~y-~~~~~~av~~a~r~~~~aGa~aVkiEdg 116 (264)
T PRK00311 78 LVVADMPFGSY-QASPEQALRNAGRLMKEAGAHAVKLEGG 116 (264)
T ss_pred cEEEeCCCCCc-cCCHHHHHHHHHHHHHHhCCeEEEEcCc
Confidence 6666643322 1345555555677788899999999764
|
|
| >TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.031 Score=55.44 Aligned_cols=62 Identities=23% Similarity=0.355 Sum_probs=48.3
Q ss_pred hhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhh
Q 020423 222 SSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVG 296 (326)
Q Consensus 222 le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iG 296 (326)
+.++|+|.|.|.... |.+ ...++.++++++.++++||++ |+|.|++++..+++.|||+|-+|
T Consensus 232 L~~aG~d~I~vd~a~----g~~--------~~~~~~i~~i~~~~~~~~vi~-G~v~t~~~a~~l~~aGad~i~vg 293 (450)
T TIGR01302 232 LVKAGVDVIVIDSSH----GHS--------IYVIDSIKEIKKTYPDLDIIA-GNVATAEQAKALIDAGADGLRVG 293 (450)
T ss_pred HHHhCCCEEEEECCC----CcH--------hHHHHHHHHHHHhCCCCCEEE-EeCCCHHHHHHHHHhCCCEEEEC
Confidence 346999999997543 111 123667888888878999888 99999999999999999999654
|
This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models. |
| >cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.54 Score=43.04 Aligned_cols=155 Identities=12% Similarity=0.113 Sum_probs=83.4
Q ss_pred CCChHHHHHHHHHcCCCcEEEecceee-cccccccc---chhhhhh-----cCCCCCc-EEEEec-C---CCHHHHHHHH
Q 020423 78 DWTDNHYRTLARLISKHAWLYTEMLAA-ETIIYQQG---NLDRFLA-----FSPEQHP-IVLQIG-G---SNLDNLAKAT 143 (326)
Q Consensus 78 ~~s~~~~r~~~~~~Gg~gli~te~~~~-~~~~~~~~---~~~~~~~-----~~~~~~p-iivQL~-g---~~~~~f~~aA 143 (326)
+.-|.....++.+.| +..+.++.... ..+.+.+. ..+..+. ....+.| +++-+- + +++++..+.+
T Consensus 18 ~ayD~~sA~l~e~aG-~d~i~vGds~~~~~lG~pDt~~vtl~em~~~~~~V~r~~~~p~viaD~~fg~y~~~~~~av~~a 96 (254)
T cd06557 18 TAYDYPTAKLADEAG-VDVILVGDSLGMVVLGYDSTLPVTLDEMIYHTRAVRRGAPRALVVADMPFGSYQTSPEQALRNA 96 (254)
T ss_pred eCCCHHHHHHHHHcC-CCEEEECHHHHHHHcCCCCCCCcCHHHHHHHHHHHHhcCCCCeEEEeCCCCcccCCHHHHHHHH
Confidence 555666666666655 88887773221 11222221 1122211 2334557 565552 2 4577776666
Q ss_pred HHHH-HCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEecc--C-------C----CCCc
Q 020423 144 ELAN-AYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRI--G-------V----DDHD 209 (326)
Q Consensus 144 ~~a~-~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~--g-------~----~~~~ 209 (326)
.++. ++|+++|.|--+ ....+.++++++ .++||.--+-+ . . ...+
T Consensus 97 ~r~~~~aGa~aVkiEd~--------------------~~~~~~I~al~~-agipV~gHiGL~pq~~~~~gg~~~~grt~~ 155 (254)
T cd06557 97 ARLMKEAGADAVKLEGG--------------------AEVAETIRALVD-AGIPVMGHIGLTPQSVNQLGGYKVQGKTEE 155 (254)
T ss_pred HHHHHHhCCeEEEEcCc--------------------HHHHHHHHHHHH-cCCCeeccccccceeeeccCCceeccCCHH
Confidence 5555 499999998421 133444455443 36776522111 0 0 0111
Q ss_pred cHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeC
Q 020423 210 SYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNG 274 (326)
Q Consensus 210 ~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~G 274 (326)
..+++++. ++.++++|+|.|.+.+- + -+..+++.++. ++|+|+-|
T Consensus 156 ~a~~~i~r-a~a~~~AGA~~i~lE~v----------------~--~~~~~~i~~~v-~iP~igiG 200 (254)
T cd06557 156 EAERLLED-ALALEEAGAFALVLECV----------------P--AELAKEITEAL-SIPTIGIG 200 (254)
T ss_pred HHHHHHHH-HHHHHHCCCCEEEEcCC----------------C--HHHHHHHHHhC-CCCEEEec
Confidence 24455553 45678899999987642 1 24566666664 89998765
|
Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis. |
| >PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.35 Score=45.05 Aligned_cols=151 Identities=13% Similarity=0.169 Sum_probs=94.9
Q ss_pred CCCcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEec
Q 020423 123 EQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCR 202 (326)
Q Consensus 123 ~~~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r 202 (326)
..-|+.++|-|... | +..+++.++||+-|-+-.+. . .++.+.+..+++++..+. .++.|-.-+-
T Consensus 73 ~~VPValHLDHg~~--~-e~i~~ai~~GFtSVM~DgS~-l-----------p~eeNi~~T~evv~~Ah~-~gv~VEaElG 136 (286)
T PRK12738 73 YNMPLALHLDHHES--L-DDIRRKVHAGVRSAMIDGSH-F-----------PFAENVKLVKSVVDFCHS-QDCSVEAELG 136 (286)
T ss_pred CCCCEEEECCCCCC--H-HHHHHHHHcCCCeEeecCCC-C-----------CHHHHHHHHHHHHHHHHH-cCCeEEEEEE
Confidence 35677777755432 2 24445667788888886431 1 134678888888887754 3444443321
Q ss_pred -c-CCCC----------CccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceE
Q 020423 203 -I-GVDD----------HDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTF 270 (326)
Q Consensus 203 -~-g~~~----------~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPV 270 (326)
+ |.++ ..+.++..+ ..++.|+|.+-|+-++.. +-+. ..|.++++.++++.+.. ++|+
T Consensus 137 ~igg~ed~~~~~~~~~~~T~peea~~----Fv~~TgvD~LAvaiGt~H-G~Y~-----~~p~Ldfd~l~~I~~~~-~vPL 205 (286)
T PRK12738 137 RLGGVEDDMSVDAESAFLTDPQEAKR----FVELTGVDSLAVAIGTAH-GLYS-----KTPKIDFQRLAEIREVV-DVPL 205 (286)
T ss_pred eeCCccCCcccccchhcCCCHHHHHH----HHHHhCCCEEEeccCccc-CCCC-----CCCcCCHHHHHHHHHHh-CCCE
Confidence 1 1111 113444433 445689999999876641 1111 12457799999988775 9999
Q ss_pred EEeCCCCCH-HHHHHHHHhCCChhhhhHHHH
Q 020423 271 TLNGGINTV-DEVNAALRKGAHHVMVGRAAY 300 (326)
Q Consensus 271 Ia~GgI~s~-~da~~~l~~GaD~V~iGRall 300 (326)
+.=||=..+ +++.++++.|..=|=+++.+.
T Consensus 206 VLHGgSG~~~e~~~kai~~GI~KiNi~T~l~ 236 (286)
T PRK12738 206 VLHGASDVPDEFVRRTIELGVTKVNVATELK 236 (286)
T ss_pred EEeCCCCCCHHHHHHHHHcCCeEEEeCcHHH
Confidence 999987666 457788889988888887764
|
|
| >PRK15072 bifunctional D-altronate/D-mannonate dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.45 Score=46.52 Aligned_cols=97 Identities=12% Similarity=0.180 Sum_probs=54.4
Q ss_pred cCCCHHHHHHHHHHHHHCCCCEEEecCCCCCC--ccc-CCC---Ccccc----------c--cCCHHHHHHHHHHHHhcC
Q 020423 132 GGSNLDNLAKATELANAYNYDEINLNCGCPSP--KVA-GHG---CFGVS----------L--MLDPKFVGEAMSVIAANT 193 (326)
Q Consensus 132 ~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~--~~~-r~d---~yGgs----------l--~~r~~~l~eiv~avr~~~ 193 (326)
.+.+++++.+.++.+.+.||..+-+..|.|.. ... ..+ .++-. + ....+...+.+++||+.+
T Consensus 124 ~~~~~~~~~~~a~~~~~~Gf~~~KiKvg~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~v~avre~~ 203 (404)
T PRK15072 124 NGRDIDELLDDVARHLELGYKAIRVQCGVPGLKTTYGVSKGKGLAYEPATKGLLPEEELWSTEKYLRFVPKLFEAVRNKF 203 (404)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEecCCCCcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHhhh
Confidence 45577888787887888999999999864320 000 000 00000 0 011345568899999988
Q ss_pred CCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEE
Q 020423 194 NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFI 231 (326)
Q Consensus 194 ~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~ 231 (326)
+..+.+.+-.+ ..-+.++..+ +.+.+++.++.+|.
T Consensus 204 G~~~~l~vDaN--~~w~~~~A~~-~~~~l~~~~l~~iE 238 (404)
T PRK15072 204 GFDLHLLHDVH--HRLTPIEAAR-LGKSLEPYRLFWLE 238 (404)
T ss_pred CCCceEEEECC--CCCCHHHHHH-HHHhccccCCcEEE
Confidence 54333332222 2223555555 34556778887775
|
|
| >PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.47 Score=45.29 Aligned_cols=162 Identities=10% Similarity=0.143 Sum_probs=95.8
Q ss_pred CcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEecc-
Q 020423 125 HPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRI- 203 (326)
Q Consensus 125 ~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~- 203 (326)
.|+.+.|-|..- |. ...++.++||+-|-+-.+.-...+.+ -.++.+.+...++++... ..|++|-.-+-.
T Consensus 76 VPValHLDHg~~--~e-~i~~ai~~GftSVMiDgS~l~~~~~~-----~p~eENI~~Tkevve~Ah-~~Gv~VEaELG~v 146 (347)
T PRK09196 76 IPVVMHQDHGNS--PA-TCQRAIQLGFTSVMMDGSLKADGKTP-----ASYEYNVDVTRKVVEMAH-ACGVSVEGELGCL 146 (347)
T ss_pred CcEEEECCCCCC--HH-HHHHHHHcCCCEEEecCCCCcccCCC-----CCHHHHHHHHHHHHHHHH-HcCCeEEEEEeec
Confidence 578888765431 22 25557778888888865431111111 134577888888888763 345555443311
Q ss_pred -CCC-------C-------------CccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHH
Q 020423 204 -GVD-------D-------------HDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALL 262 (326)
Q Consensus 204 -g~~-------~-------------~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~ 262 (326)
+.+ + ..+.++.. +..++.|+|.+-|+-++.. +-+.....+..+.++++.++++.
T Consensus 147 gg~e~~~~g~~~~~~~~~~~~~~~~~T~PeeA~----~Fv~~TgvD~LAvaiGT~H-G~Yk~~~~p~~~~LdfdrL~eI~ 221 (347)
T PRK09196 147 GSLETGMGGEEDGHGAEGKLSHDQLLTDPEEAA----DFVKKTQVDALAIAIGTSH-GAYKFTRKPTGDVLAIDRIKEIH 221 (347)
T ss_pred cCccccccccccCcccccccchhhcCCCHHHHH----HHHHHhCcCeEhhhhcccc-CCCCCCCCCChhhccHHHHHHHH
Confidence 111 0 11244443 4456789999988766541 11110000111236799999988
Q ss_pred hcCCCceEEEeCCCCCH----------------------HHHHHHHHhCCChhhhhHHHH
Q 020423 263 RDFPDLTFTLNGGINTV----------------------DEVNAALRKGAHHVMVGRAAY 300 (326)
Q Consensus 263 ~~~~~iPVIa~GgI~s~----------------------~da~~~l~~GaD~V~iGRall 300 (326)
+..+++|++.=||-..+ +++.++++.|+.=|=+++.+.
T Consensus 222 ~~v~~vPLVLHGgSG~~~~~~~~~~~~g~~~~~~~G~~~e~i~~ai~~GI~KINi~Tdl~ 281 (347)
T PRK09196 222 ARLPNTHLVMHGSSSVPQELLDIINEYGGDMPETYGVPVEEIQEGIKHGVRKVNIDTDLR 281 (347)
T ss_pred hcCCCCCEEEeCCCCCCHHHHHHHHHhcCCccccCCCCHHHHHHHHHCCCceEEeChHHH
Confidence 77547999999987553 668888999988888877664
|
|
| >PF01487 DHquinase_I: Type I 3-dehydroquinase; InterPro: IPR001381 3-dehydroquinate dehydratase (4 | Back alignment and domain information |
|---|
Probab=95.41 E-value=1.4 Score=39.19 Aligned_cols=93 Identities=14% Similarity=0.179 Sum_probs=62.3
Q ss_pred EEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCC
Q 020423 129 LQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDH 208 (326)
Q Consensus 129 vQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~ 208 (326)
+.|.+.+.+++.+.++.+...|+|.||+.+.. +.. ...+.+.+.+..+++.++.|+.+-+|...+..
T Consensus 2 v~l~~~~~~~~~~~~~~~~~~~~D~vElRlD~----------l~~---~~~~~~~~~l~~lr~~~~~piI~T~R~~~eGG 68 (224)
T PF01487_consen 2 VPLTGSTLEELLAELEEAESSGADAVELRLDY----------LEN---DSAEDISEQLAELRRSLDLPIIFTVRTKEEGG 68 (224)
T ss_dssp EEE--SSHHHHHHHHHHHHHTTTSEEEEEGGG----------STT---TSHHHHHHHHHHHHHHCTSEEEEE--BGGGTS
T ss_pred EeeCCCCHHHHHHHHHHHHhcCCCEEEEEecc----------ccc---cChHHHHHHHHHHHHhCCCCEEEEecccccCC
Confidence 67788899999999998888899999997532 221 45678889999999888999999888632221
Q ss_pred ---ccHHHHHHHHHHHhhhCCccEEEEecC
Q 020423 209 ---DSYNQLCDFIYKVSSLSPTRHFIIHSR 235 (326)
Q Consensus 209 ---~~~~e~~~~ia~~le~~Gvd~I~v~~~ 235 (326)
.+-++-.+.+...+ +.|+|+|+|.-.
T Consensus 69 ~~~~~~~~~~~ll~~~~-~~~~d~iDiE~~ 97 (224)
T PF01487_consen 69 RFQGSEEEYLELLERAI-RLGPDYIDIELD 97 (224)
T ss_dssp SBSS-HHHHHHHHHHHH-HHTSSEEEEEGG
T ss_pred CCcCCHHHHHHHHHHHH-HcCCCEEEEEcc
Confidence 12223334444444 467999999754
|
2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. The best studied type I enzyme is from Escherichia coli (gene aroD) and related bacteria where it is a homodimeric protein. In fungi, dehydroquinase is part of a multifunctional enzyme which catalyzes five consecutive steps in the shikimate pathway. A histidine [] is involved in the catalytic mechanism.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 2O7Q_A 2GPT_A 2O7S_A 1SFL_A 2OCZ_A 2OX1_C 1GQN_A 1QFE_B 1L9W_D 3L9C_A .... |
| >COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.39 E-value=0.57 Score=41.47 Aligned_cols=119 Identities=19% Similarity=0.238 Sum_probs=77.4
Q ss_pred CCcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEecc
Q 020423 124 QHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRI 203 (326)
Q Consensus 124 ~~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~ 203 (326)
..|++.=|.+.++++-...++.+.+.|++.|||.+.+|. ..|.++++++..+ ++-+
T Consensus 12 ~~~vI~Vlr~~~~e~a~~~a~Ali~gGi~~IEITl~sp~-------------------a~e~I~~l~~~~p-----~~lI 67 (211)
T COG0800 12 AQPVVPVIRGDDVEEALPLAKALIEGGIPAIEITLRTPA-------------------ALEAIRALAKEFP-----EALI 67 (211)
T ss_pred HCCeeEEEEeCCHHHHHHHHHHHHHcCCCeEEEecCCCC-------------------HHHHHHHHHHhCc-----ccEE
Confidence 457777788899999999999999999999999775554 2356667766643 2222
Q ss_pred CCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHH
Q 020423 204 GVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVN 283 (326)
Q Consensus 204 g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~ 283 (326)
|.-...+.++.. .+.++|.+++. +.. .+-+.++.. .+. ++|++ =|+.|+.++.
T Consensus 68 GAGTVL~~~q~~-----~a~~aGa~fiV-sP~-----------------~~~ev~~~a-~~~-~ip~~--PG~~TptEi~ 120 (211)
T COG0800 68 GAGTVLNPEQAR-----QAIAAGAQFIV-SPG-----------------LNPEVAKAA-NRY-GIPYI--PGVATPTEIM 120 (211)
T ss_pred ccccccCHHHHH-----HHHHcCCCEEE-CCC-----------------CCHHHHHHH-HhC-CCccc--CCCCCHHHHH
Confidence 322222333332 23469999885 321 122333333 333 55543 5889999999
Q ss_pred HHHHhCCChh
Q 020423 284 AALRKGAHHV 293 (326)
Q Consensus 284 ~~l~~GaD~V 293 (326)
.+++.|++.+
T Consensus 121 ~Ale~G~~~l 130 (211)
T COG0800 121 AALELGASAL 130 (211)
T ss_pred HHHHcChhhe
Confidence 9999988765
|
|
| >PRK13306 ulaD 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=95.37 E-value=0.25 Score=44.07 Aligned_cols=144 Identities=15% Similarity=0.124 Sum_probs=83.4
Q ss_pred CCCcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEec
Q 020423 123 EQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCR 202 (326)
Q Consensus 123 ~~~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r 202 (326)
.+.++.+-|.-.++..+...+ +.++|+|.+.+|..+. .+-+.+.++++++ .+.-+.|-+-
T Consensus 55 ~~~~v~~DLK~~Di~~~v~~~--~~~~Gad~vTvH~~a~-----------------~~~i~~~~~~~~~-~g~~~~V~ll 114 (216)
T PRK13306 55 PDKIIVADTKIADAGKILAKM--AFEAGADWVTVICAAH-----------------IPTIKAALKVAKE-FNGEIQIELY 114 (216)
T ss_pred CCCEEEEEEeecCCcHHHHHH--HHHCCCCEEEEeCCCC-----------------HHHHHHHHHHHHH-cCCEEEEEEC
Confidence 367899999878877776644 7789999999996321 3345556666553 2444444433
Q ss_pred cCCCCCccHHHHHHHHHHHhhhCCccEEEEecC-CcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHH
Q 020423 203 IGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSR-KALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDE 281 (326)
Q Consensus 203 ~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~-~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~d 281 (326)
.+. +.+++ . ...+.|++.+.+|-. .....|. ...+...+.++++.+. +..+...||| +++.
T Consensus 115 ts~----~~~~l----~-~~~~~~~~~~vl~~a~~~~~~G~------v~s~~~~~~ir~~~~~--~~~i~V~gGI-~~~~ 176 (216)
T PRK13306 115 GNW----TWEQA----Q-QWRDAGISQVIYHRSRDAQLAGV------AWGEKDLNKVKKLSDM--GFKVSVTGGL-VVED 176 (216)
T ss_pred CCC----CHHHH----H-HHHcCChhhhhhhhhhhhhhcCC------CCCHHHHHHHHHHhcC--CCeEEEcCCC-CHhh
Confidence 332 12222 1 223456666655532 2211111 0111123345554432 4458899999 4555
Q ss_pred HHHHHHhCCChhhhhHHHHhCCc
Q 020423 282 VNAALRKGAHHVMVGRAAYQNPW 304 (326)
Q Consensus 282 a~~~l~~GaD~V~iGRall~dP~ 304 (326)
+....+.|||.+.+||++...++
T Consensus 177 ~~~~~~~~ad~~VvGr~I~~a~d 199 (216)
T PRK13306 177 LKLFKGIPVKTFIAGRAIRGAAD 199 (216)
T ss_pred HHHHhcCCCCEEEECCcccCCCC
Confidence 55556679999999999886665
|
|
| >PLN02424 ketopantoate hydroxymethyltransferase | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.23 Score=46.89 Aligned_cols=130 Identities=10% Similarity=0.053 Sum_probs=80.8
Q ss_pred hhhhhcCCCCCcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCC
Q 020423 115 DRFLAFSPEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTN 194 (326)
Q Consensus 115 ~~~~~~~~~~~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~ 194 (326)
..+.+.+..+.|++ =+...+ .-.|+.+.++|+|.|=+--+-.. +. -+|-..+.-..+.+...+++|++.+.
T Consensus 25 ~~l~~~k~~g~kiv-mlTAyD----~~sA~i~d~aGvD~ILVGDSlgm--v~--lG~~~T~~Vtld~mi~H~~aV~Rga~ 95 (332)
T PLN02424 25 RTLRQKYRRGEPIT-MVTAYD----YPSAVHVDSAGIDVCLVGDSAAM--VV--HGHDTTLPITLDEMLVHCRAVARGAN 95 (332)
T ss_pred HHHHHHHhCCCcEE-EEecCC----HHHHHHHHHcCCCEEEECCcHHH--Hh--cCCCCCCCcCHHHHHHHHHHHhccCC
Confidence 34444555655554 344445 34677888999999987421111 00 11222333456777888888888888
Q ss_pred CcEEE-EeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEE
Q 020423 195 VPVSV-KCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFT 271 (326)
Q Consensus 195 ~pv~v-K~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVI 271 (326)
.|++| -+..+... .+.++.++...+++.++|++.|.+.|+.. ...+.++.+.+. .|||+
T Consensus 96 ~a~vVaDmPfgSY~-~s~e~av~nA~rl~~eaGa~aVKlEGg~~---------------~~~~~I~~l~~~--GIPV~ 155 (332)
T PLN02424 96 RPLLVGDLPFGSYE-SSTDQAVESAVRMLKEGGMDAVKLEGGSP---------------SRVTAAKAIVEA--GIAVM 155 (332)
T ss_pred CCEEEeCCCCCCCC-CCHHHHHHHHHHHHHHhCCcEEEECCCcH---------------HHHHHHHHHHHc--CCCEE
Confidence 89887 77776322 34566666677777789999999987521 013455666633 79998
|
|
| >PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2 | Back alignment and domain information |
|---|
Probab=95.33 E-value=0.14 Score=43.97 Aligned_cols=95 Identities=15% Similarity=0.216 Sum_probs=59.2
Q ss_pred HHHHHHHHHhcCCCc--EEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccH-HHH
Q 020423 182 VGEAMSVIAANTNVP--VSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKY-EYY 258 (326)
Q Consensus 182 l~eiv~avr~~~~~p--v~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~-~~i 258 (326)
+.+.++++++..+.. +.|.. ++.++..+ .+ ++|+|.|-+...+. ... +.+
T Consensus 66 i~~av~~~~~~~~~~~~I~VEv-------~~~ee~~e----a~-~~g~d~I~lD~~~~---------------~~~~~~v 118 (169)
T PF01729_consen 66 IEEAVKAARQAAPEKKKIEVEV-------ENLEEAEE----AL-EAGADIIMLDNMSP---------------EDLKEAV 118 (169)
T ss_dssp HHHHHHHHHHHSTTTSEEEEEE-------SSHHHHHH----HH-HTT-SEEEEES-CH---------------HHHHHHH
T ss_pred HHHHHHHHHHhCCCCceEEEEc-------CCHHHHHH----HH-HhCCCEEEecCcCH---------------HHHHHHH
Confidence 456677777765322 44432 23444433 23 48999998875321 112 233
Q ss_pred HHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhCCc
Q 020423 259 YALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW 304 (326)
Q Consensus 259 ~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~dP~ 304 (326)
..+....+++.+.++||| +++.+.++.+.|+|.+.+|.....-|+
T Consensus 119 ~~l~~~~~~v~ie~SGGI-~~~ni~~ya~~gvD~isvg~~~~~a~~ 163 (169)
T PF01729_consen 119 EELRELNPRVKIEASGGI-TLENIAEYAKTGVDVISVGSLTHSAPP 163 (169)
T ss_dssp HHHHHHTTTSEEEEESSS-STTTHHHHHHTT-SEEEECHHHHSBE-
T ss_pred HHHhhcCCcEEEEEECCC-CHHHHHHHHhcCCCEEEcChhhcCCcc
Confidence 333334567999999999 889999999999999999988766554
|
4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D .... |
| >cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds | Back alignment and domain information |
|---|
Probab=95.32 E-value=0.23 Score=45.10 Aligned_cols=144 Identities=8% Similarity=-0.017 Sum_probs=83.5
Q ss_pred HHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCC-CcEEEEeccCCCCCccHHHHHHHHH
Q 020423 141 KATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTN-VPVSVKCRIGVDDHDSYNQLCDFIY 219 (326)
Q Consensus 141 ~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~-~pv~vK~r~g~~~~~~~~e~~~~ia 219 (326)
-.|+.++++|||.|-+-.+.........| ...-..+.+.+.+++|++.+. .|+++-+-.|+.. +.++..+.+.
T Consensus 23 ~sA~i~e~aG~dai~v~~s~~a~~~G~pD----~~~vtl~em~~~~~~I~r~~~~~pviaD~~~G~g~--~~~~~~~~~~ 96 (240)
T cd06556 23 SMAKQFADAGLNVMLVGDSQGMTVAGYDD----TLPYPVNDVPYHVRAVRRGAPLALIVADLPFGAYG--APTAAFELAK 96 (240)
T ss_pred HHHHHHHHcCCCEEEEChHHHHHhcCCCC----CCCcCHHHHHHHHHHHHhhCCCCCEEEeCCCCCCc--CHHHHHHHHH
Confidence 45778888999999885321110000011 111246677778888888775 6999998888654 2344555444
Q ss_pred HHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCC---------------CHHHHH-
Q 020423 220 KVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGIN---------------TVDEVN- 283 (326)
Q Consensus 220 ~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~---------------s~~da~- 283 (326)
++ .++|++.|++.+... ..+.++.+++. .+||++==|.. +.+.++
T Consensus 97 ~l-~~aGa~gv~iED~~~----------------~~~~i~ai~~a--~i~ViaRtd~~pq~~~~~gg~~~~~~~~~~~~~ 157 (240)
T cd06556 97 TF-MRAGAAGVKIEGGEW----------------HIETLQMLTAA--AVPVIAHTGLTPQSVNTSGGDEGQYRGDEAGEQ 157 (240)
T ss_pred HH-HHcCCcEEEEcCcHH----------------HHHHHHHHHHc--CCeEEEEeCCchhhhhccCCceeeccCHHHHHH
Confidence 44 469999999976320 13345555443 47887654431 122233
Q ss_pred ------HHHHhCCChhhhhHHHHhCCchhHHhHHHh
Q 020423 284 ------AALRKGAHHVMVGRAAYQNPWYTLGHVDTA 313 (326)
Q Consensus 284 ------~~l~~GaD~V~iGRall~dP~l~~~~i~~~ 313 (326)
.+.+.|||+|.+= + . ++. ..+++.+.
T Consensus 158 ai~Ra~ay~~AGAd~i~~e-~-~-~~e-~~~~i~~~ 189 (240)
T cd06556 158 LIADALAYAPAGADLIVME-C-V-PVE-LAKQITEA 189 (240)
T ss_pred HHHHHHHHHHcCCCEEEEc-C-C-CHH-HHHHHHHh
Confidence 3334799999884 2 2 444 34444443
|
Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT). |
| >PRK13399 fructose-1,6-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=95.30 E-value=0.74 Score=44.00 Aligned_cols=161 Identities=13% Similarity=0.162 Sum_probs=96.5
Q ss_pred CcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEec-c
Q 020423 125 HPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCR-I 203 (326)
Q Consensus 125 ~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r-~ 203 (326)
.|+++.|-|..- |. ..+++.++||+-|-+-.+.-. . +.-+-+++.+.+..+++++..+ ..|++|-.-+- +
T Consensus 76 VPVaLHLDHg~~--~e-~i~~Ai~~GFtSVMiDgS~l~-~----~~~~~~~eeNI~~Trevve~Ah-~~GvsVEaELG~i 146 (347)
T PRK13399 76 IPICLHQDHGNS--PA-TCQSAIRSGFTSVMMDGSLLA-D----GKTPASYDYNVDVTRRVTEMAH-AVGVSVEGELGCL 146 (347)
T ss_pred CcEEEECCCCCC--HH-HHHHHHhcCCCEEEEeCCCCC-C----CCCccCHHHHHHHHHHHHHHHH-HcCCeEEEEeeec
Confidence 577777755431 11 246667788888888654321 1 1123356678888888888753 34655554432 1
Q ss_pred C-CC-------C-------------CccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHH
Q 020423 204 G-VD-------D-------------HDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALL 262 (326)
Q Consensus 204 g-~~-------~-------------~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~ 262 (326)
+ .+ + ..+.++..+ ..++.|+|.+-++-++.. +-+.+...+..+.++++.++++.
T Consensus 147 gg~e~~~~g~ed~~~~~~~~~~~~~~T~PeeA~~----Fv~~TgvD~LAvaiGt~H-G~Yk~~~~p~~~~L~~drl~eI~ 221 (347)
T PRK13399 147 GSLETGEAGEEDGVGAEGKLSHDQMLTDPDQAVD----FVQRTGVDALAIAIGTSH-GAYKFTRKPDGDILAIDRIEEIH 221 (347)
T ss_pred cCcccccccccCCccccccccccccCCCHHHHHH----HHHHHCcCEEhhhhcccc-CCcCCCCCCChhhccHHHHHHHH
Confidence 1 01 1 112444433 445689999988765531 11111000111226789999888
Q ss_pred hcCCCceEEEeCCCCCH----------------------HHHHHHHHhCCChhhhhHHH
Q 020423 263 RDFPDLTFTLNGGINTV----------------------DEVNAALRKGAHHVMVGRAA 299 (326)
Q Consensus 263 ~~~~~iPVIa~GgI~s~----------------------~da~~~l~~GaD~V~iGRal 299 (326)
+..+++|++.=||-..+ +++.++++.|..=|-+++.+
T Consensus 222 ~~v~~vPLVLHGgSGvp~~~~~~~~~~g~~~~~~~g~~~e~~~kai~~GI~KINi~Tdl 280 (347)
T PRK13399 222 ARLPNTHLVMHGSSSVPQELQEIINAYGGKMKETYGVPVEEIQRGIKHGVRKVNIDTDI 280 (347)
T ss_pred hhcCCCCEEEeCCCCCCHHHHHHHHHhcCCccccCCCCHHHHHHHHHCCCeEEEeChHH
Confidence 77547999999997765 77889999998777777665
|
|
| >TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial | Back alignment and domain information |
|---|
Probab=95.29 E-value=0.12 Score=48.95 Aligned_cols=65 Identities=17% Similarity=0.221 Sum_probs=47.6
Q ss_pred HHHHhhhCC--ccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhh
Q 020423 218 IYKVSSLSP--TRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMV 295 (326)
Q Consensus 218 ia~~le~~G--vd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~i 295 (326)
+.+++ ++| +|+|.+.... |++ ..-.+.++.+++.+ ..|.+..|.|.+++++..+++.|||+|-+
T Consensus 99 ~~~lv-~a~~~~d~i~~D~ah----g~s--------~~~~~~i~~i~~~~-p~~~vi~GnV~t~e~a~~l~~aGad~I~V 164 (321)
T TIGR01306 99 VTQLA-EEALTPEYITIDIAH----GHS--------NSVINMIKHIKTHL-PDSFVIAGNVGTPEAVRELENAGADATKV 164 (321)
T ss_pred HHHHH-hcCCCCCEEEEeCcc----Cch--------HHHHHHHHHHHHhC-CCCEEEEecCCCHHHHHHHHHcCcCEEEE
Confidence 34444 467 6999886532 211 11256677777776 67889999999999999999999999876
Q ss_pred h
Q 020423 296 G 296 (326)
Q Consensus 296 G 296 (326)
|
T Consensus 165 ~ 165 (321)
T TIGR01306 165 G 165 (321)
T ss_pred C
Confidence 6
|
A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages. |
| >TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype | Back alignment and domain information |
|---|
Probab=95.28 E-value=0.87 Score=43.48 Aligned_cols=162 Identities=10% Similarity=0.122 Sum_probs=96.9
Q ss_pred CcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEecc-
Q 020423 125 HPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRI- 203 (326)
Q Consensus 125 ~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~- 203 (326)
.|+.+.|-|..- | +..+++.++||+-|-+-.+.-... +-.-.++.+.+..+++++.... .|+.|-.-+-.
T Consensus 74 VPValHLDHg~~--~-e~i~~Ai~~GFtSVMiDgS~l~~~-----~~~~p~eENI~~Tkevve~Ah~-~GvsVEaELG~i 144 (347)
T TIGR01521 74 IPVVMHQDHGNS--P-ATCQRAIQLGFTSVMMDGSLREDA-----KTPADYDYNVRVTAEVVAFAHA-VGASVEGELGCL 144 (347)
T ss_pred CcEEEECCCCCC--H-HHHHHHHHcCCCEEeecCcCCccc-----CCCCCHHHHHHHHHHHHHHHHH-cCCeEEEEeeec
Confidence 588888865421 1 235566778999888875531110 1122455778888888887644 34444332211
Q ss_pred -CCC-------C-------------CccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHH
Q 020423 204 -GVD-------D-------------HDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALL 262 (326)
Q Consensus 204 -g~~-------~-------------~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~ 262 (326)
+.+ + ..+.++.. +..++.|+|.+-++-++.. +-+.+...+..+.++++.++++.
T Consensus 145 gg~e~~~~g~~d~~~~~~~~~~~~~~T~PeeA~----~Fv~~TgvD~LAvaiGt~H-G~Yk~~~~p~~~~Ld~~rL~eI~ 219 (347)
T TIGR01521 145 GSLETGMGEAEDGHGFEGVLDHSQLLTDPEEAA----DFVKKTKVDALAVAIGTSH-GAYKFTRKPTGEVLAIQRIEEIH 219 (347)
T ss_pred ccccccccccccCcccccccchhhcCCCHHHHH----HHHHHHCcCEEehhccccc-CCcCCCCCCChhhcCHHHHHHHH
Confidence 111 1 11234433 4456689999998766541 11110000011126789998887
Q ss_pred hcCCCceEEEeCCCCCH----------------------HHHHHHHHhCCChhhhhHHHH
Q 020423 263 RDFPDLTFTLNGGINTV----------------------DEVNAALRKGAHHVMVGRAAY 300 (326)
Q Consensus 263 ~~~~~iPVIa~GgI~s~----------------------~da~~~l~~GaD~V~iGRall 300 (326)
+...++|++.=||-..+ +++.++++.|..=|=+++.+.
T Consensus 220 ~~v~~vPLVLHGgSG~p~~~~~~~~~~~~~~~~~~g~p~e~i~~ai~~GI~KVNi~Tdl~ 279 (347)
T TIGR01521 220 ARLPDTHLVMHGSSSVPQEWLDIINEYGGEIKETYGVPVEEIVEGIKYGVRKVNIDTDLR 279 (347)
T ss_pred ccCCCCCEEEeCCCCCchHhhHHHHhhcccccccCCCCHHHHHHHHHCCCeeEEeChHHH
Confidence 76547999999998766 788899999988887777663
|
Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle. |
| >TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase | Back alignment and domain information |
|---|
Probab=95.26 E-value=0.22 Score=45.71 Aligned_cols=109 Identities=11% Similarity=-0.042 Sum_probs=63.8
Q ss_pred hhhhcCCCCCcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCC
Q 020423 116 RFLAFSPEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNV 195 (326)
Q Consensus 116 ~~~~~~~~~~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~ 195 (326)
.+.+.+..+.|+++ +...+ .-.|+.+.++|+|.|=+- .....+. -+|-..+.-..+.+...+++|++....
T Consensus 6 ~~~~~~~~g~~i~m-~tayD----~~sA~i~~~aG~d~ilvG--dSlgm~~--lG~~~t~~vtldem~~h~~aV~rg~~~ 76 (263)
T TIGR00222 6 SLLQKKKQEEKIVA-ITAYD----YSFAKLFADAGVDVILVG--DSLGMVV--LGHDSTLPVTVADMIYHTAAVKRGAPN 76 (263)
T ss_pred HHHHHHhCCCcEEE-EeccC----HHHHHHHHHcCCCEEEEC--ccHhHHh--cCCCCCCCcCHHHHHHHHHHHHhhCCC
Confidence 34444555665542 33344 346788889999999863 2211110 112222334567777788888887544
Q ss_pred cEEE-EeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecC
Q 020423 196 PVSV-KCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSR 235 (326)
Q Consensus 196 pv~v-K~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~ 235 (326)
|+.| .+..+... +.++..+...++++++|++.+.+.++
T Consensus 77 ~~vv~DmPf~sy~--~~e~a~~na~rl~~eaGa~aVkiEgg 115 (263)
T TIGR00222 77 CLIVTDLPFMSYA--TPEQALKNAARVMQETGANAVKLEGG 115 (263)
T ss_pred ceEEeCCCcCCCC--CHHHHHHHHHHHHHHhCCeEEEEcCc
Confidence 4333 33433222 25566666777888899999999875
|
Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase. |
| >cd03322 rpsA The starvation sensing protein RpsA from E | Back alignment and domain information |
|---|
Probab=95.25 E-value=0.53 Score=45.26 Aligned_cols=74 Identities=14% Similarity=0.075 Sum_probs=46.0
Q ss_pred ecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCcc
Q 020423 131 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDS 210 (326)
Q Consensus 131 L~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~ 210 (326)
+.+.+++++.+.++.+.+.||..+-+.. .+.++++|+.++..+.+.+-.+ ..-+
T Consensus 122 ~~~~~~~~~~~~a~~~~~~Gf~~~KiKv------------------------~~~v~avre~~G~~~~l~vDaN--~~w~ 175 (361)
T cd03322 122 ASGRDIPELLEAVERHLAQGYRAIRVQL------------------------PKLFEAVREKFGFEFHLLHDVH--HRLT 175 (361)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCeEeeCH------------------------HHHHHHHHhccCCCceEEEECC--CCCC
Confidence 3445677888888877888999888743 5668888888754333322221 1123
Q ss_pred HHHHHHHHHHHhhhCCccEEE
Q 020423 211 YNQLCDFIYKVSSLSPTRHFI 231 (326)
Q Consensus 211 ~~e~~~~ia~~le~~Gvd~I~ 231 (326)
.++..+ +.+.+++.++.++.
T Consensus 176 ~~~A~~-~~~~l~~~~l~~iE 195 (361)
T cd03322 176 PNQAAR-FGKDVEPYRLFWME 195 (361)
T ss_pred HHHHHH-HHHHhhhcCCCEEE
Confidence 445444 34456777887775
|
coli and its homologs are lactonizing enzymes whose putative targets are homoserine lactone (HSL)-derivative. They are part of the mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subfamily share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and catalytic residues, a partially conserved Lys-X-Lys motif and a conserved histidine-aspartate dyad. |
| >cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain | Back alignment and domain information |
|---|
Probab=95.25 E-value=0.8 Score=42.40 Aligned_cols=108 Identities=10% Similarity=0.056 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHhc-CCCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHH
Q 020423 180 KFVGEAMSVIAAN-TNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYY 258 (326)
Q Consensus 180 ~~l~eiv~avr~~-~~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i 258 (326)
+...+-+...++. .+.|+.+-+... +.++..+ .++.+++.|+|+|.++........... ....+....+.+
T Consensus 83 ~~~~~~i~~~~~~~~~~pvi~si~g~-----~~~~~~~-~a~~~~~~G~d~ielN~~cP~~~~~~~--~~~~~~~~~eiv 154 (289)
T cd02810 83 DVWLQDIAKAKKEFPGQPLIASVGGS-----SKEDYVE-LARKIERAGAKALELNLSCPNVGGGRQ--LGQDPEAVANLL 154 (289)
T ss_pred HHHHHHHHHHHhccCCCeEEEEeccC-----CHHHHHH-HHHHHHHhCCCEEEEEcCCCCCCCCcc--cccCHHHHHHHH
Confidence 3333333333343 578888876653 2334444 345566789999999865332111000 000011113445
Q ss_pred HHHHhcCCCceEEE-eCCCCCHHH----HHHHHHhCCChhhhh
Q 020423 259 YALLRDFPDLTFTL-NGGINTVDE----VNAALRKGAHHVMVG 296 (326)
Q Consensus 259 ~~i~~~~~~iPVIa-~GgI~s~~d----a~~~l~~GaD~V~iG 296 (326)
.++++.. ++||+. .+...+.++ +..+.+.|+|+|.+-
T Consensus 155 ~~vr~~~-~~pv~vKl~~~~~~~~~~~~a~~l~~~Gad~i~~~ 196 (289)
T cd02810 155 KAVKAAV-DIPLLVKLSPYFDLEDIVELAKAAERAGADGLTAI 196 (289)
T ss_pred HHHHHcc-CCCEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEE
Confidence 5555544 888875 233345333 333445899999874
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of |
| >TIGR00167 cbbA ketose-bisphosphate aldolases | Back alignment and domain information |
|---|
Probab=95.24 E-value=0.49 Score=44.14 Aligned_cols=150 Identities=13% Similarity=0.168 Sum_probs=92.5
Q ss_pred CCcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEecc
Q 020423 124 QHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRI 203 (326)
Q Consensus 124 ~~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~ 203 (326)
..|++++|-|..- | +..+++.++||+-|-+-.+. -.++.+.+...++++..+. .|++|-.-+..
T Consensus 77 ~VPV~lHLDHg~~--~-e~i~~ai~~GftSVMiDgS~------------lp~eeNi~~T~~vv~~Ah~-~gv~VEaElG~ 140 (288)
T TIGR00167 77 GVPVALHLDHGAS--E-EDCAQAVKAGFSSVMIDGSH------------EPFEENIELTKKVVERAHK-MGVSVEAELGT 140 (288)
T ss_pred CCcEEEECCCCCC--H-HHHHHHHHcCCCEEEecCCC------------CCHHHHHHHHHHHHHHHHH-cCCEEEEEEee
Confidence 4467777654321 1 22444455677777665332 1234667788888777543 35554443321
Q ss_pred --CCCC----------CccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCC-ccHHHHHHHHhcCCCceE
Q 020423 204 --GVDD----------HDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPP-LKYEYYYALLRDFPDLTF 270 (326)
Q Consensus 204 --g~~~----------~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~-~~~~~i~~i~~~~~~iPV 270 (326)
|.++ ..++++. .+..++.|+|.+-|+-++.. +.+.+ .+. ++++.++++.+.. ++|+
T Consensus 141 vgg~e~~~~~~~~~~~~T~peea----~~Fv~~TgvD~LAvaiGt~H-G~y~~-----~p~~Ld~~~L~~I~~~v-~vPL 209 (288)
T TIGR00167 141 LGGEEDGVSVADESALYTDPEEA----KEFVKLTGVDSLAAAIGNVH-GVYKG-----EPKGLDFERLEEIQKYV-NLPL 209 (288)
T ss_pred ccCccCCcccccccccCCCHHHH----HHHHhccCCcEEeeccCccc-cccCC-----CCCccCHHHHHHHHHHh-CCCE
Confidence 1111 1123443 34456789999999876641 11111 123 6799999987765 9999
Q ss_pred EEeCCCCCH-HHHHHHHHhCCChhhhhHHHH
Q 020423 271 TLNGGINTV-DEVNAALRKGAHHVMVGRAAY 300 (326)
Q Consensus 271 Ia~GgI~s~-~da~~~l~~GaD~V~iGRall 300 (326)
+.=||-..+ +++.++++.|+.=|=+++.+.
T Consensus 210 VlHGgSG~~~e~~~~ai~~Gi~KiNi~T~l~ 240 (288)
T TIGR00167 210 VLHGGSGIPDEEIKKAISLGVVKVNIDTELQ 240 (288)
T ss_pred EEeCCCCCCHHHHHHHHHcCCeEEEcChHHH
Confidence 999998888 568889999988888888764
|
fructose-bisphosphate and tagatose-bisphosphate aldolase. |
| >TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase | Back alignment and domain information |
|---|
Probab=95.23 E-value=0.23 Score=46.45 Aligned_cols=178 Identities=13% Similarity=0.098 Sum_probs=92.0
Q ss_pred hhhcCCCCCcEE-EEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCc-ccCCCCccccccCCHHHHHHHHHHHHhcCC
Q 020423 117 FLAFSPEQHPIV-LQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPK-VAGHGCFGVSLMLDPKFVGEAMSVIAANTN 194 (326)
Q Consensus 117 ~~~~~~~~~pii-vQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~-~~r~d~yGgsl~~r~~~l~eiv~avr~~~~ 194 (326)
+.++|..+.+++ .+. .+ +-.|+.++++||+.+-+....-... ....|. | + -..+.+.+.++.|...++
T Consensus 8 ~r~l~~~~~~l~~p~v--~D----a~SArl~e~aGf~ai~~sg~~~~as~lG~pD~-g--~-l~~~e~~~~~~~I~~~~~ 77 (294)
T TIGR02319 8 FRELMNAPEILVVPSA--YD----ALSAKVIQQAGFPAVHMTGSGTSASMLGLPDL-G--F-TSVSEQAINAKNIVLAVD 77 (294)
T ss_pred HHHHhcCCCcEEeecC--cC----HHHHHHHHHcCCCEEEecHHHHHHHHcCCCCc-C--C-CCHHHHHHHHHHHHhccC
Confidence 444555555554 222 23 3467888899999998742111100 011121 2 1 234556667777778889
Q ss_pred CcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCc-ccCCCCcCCcCCCCCcc-HHHHHHHHhcCCCceEEE
Q 020423 195 VPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKA-LLNGISPAENRTIPPLK-YEYYYALLRDFPDLTFTL 272 (326)
Q Consensus 195 ~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~-~~~g~~~~~~~~~~~~~-~~~i~~i~~~~~~iPVIa 272 (326)
+||++-+-.|+-+..++ .+. .+.++++|+..|++..... ...|+.+. ...++... .+.++..++...+.+++.
T Consensus 78 lPv~aD~dtGyG~~~~v---~r~-V~~~~~aGaagi~IEDq~~pK~cg~~~~-k~lv~~ee~~~kI~Aa~~A~~~~d~~I 152 (294)
T TIGR02319 78 VPVIMDADAGYGNAMSV---WRA-TREFERVGIVGYHLEDQVNPKRCGHLEG-KRLISTEEMTGKIEAAVEAREDEDFTI 152 (294)
T ss_pred CCEEEECCCCCCCcHHH---HHH-HHHHHHcCCeEEEEECCCCccccCCCCC-ccccCHHHHHHHHHHHHHhccCCCeEE
Confidence 99999988887654433 332 3455789999999975432 12232110 01111111 123333332222333444
Q ss_pred eCCCCC-----HHHH----HHHHHhCCChhhhhHHHHhCCchhHHhHHH
Q 020423 273 NGGINT-----VDEV----NAALRKGAHHVMVGRAAYQNPWYTLGHVDT 312 (326)
Q Consensus 273 ~GgI~s-----~~da----~~~l~~GaD~V~iGRall~dP~l~~~~i~~ 312 (326)
+..... .+++ ..+.+.|||.|.+-. +.+++. .+.+.+
T Consensus 153 ~ARTDa~~~~g~deaI~Ra~aY~eAGAD~ifi~~--~~~~~e-i~~~~~ 198 (294)
T TIGR02319 153 IARTDARESFGLDEAIRRSREYVAAGADCIFLEA--MLDVEE-MKRVRD 198 (294)
T ss_pred EEEecccccCCHHHHHHHHHHHHHhCCCEEEecC--CCCHHH-HHHHHH
Confidence 433322 2332 334458999999942 566663 333333
|
This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization. |
| >PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=95.22 E-value=0.41 Score=44.54 Aligned_cols=150 Identities=12% Similarity=0.176 Sum_probs=93.0
Q ss_pred CCcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEec-
Q 020423 124 QHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCR- 202 (326)
Q Consensus 124 ~~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r- 202 (326)
..|++++|-|... | +..+++.++||+-|-+-.+. . +++.+.+..+++++..+. .|+.|-.-+-
T Consensus 74 ~VPV~lHLDHg~~--~-e~i~~Ai~~GftSVM~DgS~-l-----------~~eeNi~~T~~vv~~Ah~-~gv~VEaElG~ 137 (284)
T PRK09195 74 HHPLALHLDHHEK--F-DDIAQKVRSGVRSVMIDGSH-L-----------PFAQNISLVKEVVDFCHR-FDVSVEAELGR 137 (284)
T ss_pred CCCEEEECCCCCC--H-HHHHHHHHcCCCEEEeCCCC-C-----------CHHHHHHHHHHHHHHHHH-cCCEEEEEEec
Confidence 4566666654321 1 33455566777777775321 1 234677888888877654 3544443322
Q ss_pred c-CCCC----------CccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEE
Q 020423 203 I-GVDD----------HDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFT 271 (326)
Q Consensus 203 ~-g~~~----------~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVI 271 (326)
+ |.++ ..++++..+ ..++.|+|.+-|+-++.. +-+. ..|.++++.++++.+.. ++|++
T Consensus 138 vgg~e~~~~~~~~~~~~T~peea~~----Fv~~TgvD~LAvaiGt~H-G~y~-----~~p~Ld~~~L~~I~~~~-~vPLV 206 (284)
T PRK09195 138 LGGQEDDLQVDEADALYTDPAQARE----FVEATGIDSLAVAIGTAH-GMYK-----GEPKLDFDRLENIRQWV-NIPLV 206 (284)
T ss_pred ccCcccCcccccccccCCCHHHHHH----HHHHHCcCEEeeccCccc-cccC-----CCCcCCHHHHHHHHHHh-CCCeE
Confidence 1 1111 123444444 445689999999866641 1111 12456799999987764 99999
Q ss_pred EeCCCCCH-HHHHHHHHhCCChhhhhHHHH
Q 020423 272 LNGGINTV-DEVNAALRKGAHHVMVGRAAY 300 (326)
Q Consensus 272 a~GgI~s~-~da~~~l~~GaD~V~iGRall 300 (326)
.=||=..+ +++.++++.|+.=|=++|.+.
T Consensus 207 LHGgSG~~~e~~~~ai~~Gi~KiNi~T~l~ 236 (284)
T PRK09195 207 LHGASGLPTKDIQQTIKLGICKVNVATELK 236 (284)
T ss_pred EecCCCCCHHHHHHHHHcCCeEEEeCcHHH
Confidence 99987666 457788889998888888875
|
|
| >PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants | Back alignment and domain information |
|---|
Probab=95.21 E-value=0.93 Score=42.04 Aligned_cols=140 Identities=17% Similarity=0.193 Sum_probs=86.3
Q ss_pred CCCCcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEe
Q 020423 122 PEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKC 201 (326)
Q Consensus 122 ~~~~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~ 201 (326)
+...|+++++.+.+.++-.+.++.++++|+|++-+.. |... . ...+-+.+..+.|.++++.|+.+--
T Consensus 68 ~~~~~vi~gv~~~st~~~i~~a~~a~~~Gad~v~v~~--P~~~-------~----~s~~~l~~y~~~ia~~~~~pi~iYn 134 (289)
T PF00701_consen 68 AGRVPVIAGVGANSTEEAIELARHAQDAGADAVLVIP--PYYF-------K----PSQEELIDYFRAIADATDLPIIIYN 134 (289)
T ss_dssp TTSSEEEEEEESSSHHHHHHHHHHHHHTT-SEEEEEE--STSS-------S----CCHHHHHHHHHHHHHHSSSEEEEEE
T ss_pred cCceEEEecCcchhHHHHHHHHHHHhhcCceEEEEec--cccc-------c----chhhHHHHHHHHHHhhcCCCEEEEE
Confidence 3457899999999999999999999999999999853 3311 1 2355677888888888899998865
Q ss_pred ccCCCC-CccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcC-CCceEEEeCCCCCH
Q 020423 202 RIGVDD-HDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF-PDLTFTLNGGINTV 279 (326)
Q Consensus 202 r~g~~~-~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~-~~iPVIa~GgI~s~ 279 (326)
.+.... .-+.+ + +.++.+.-.+-.+-.+.+ ++..+.++.+.. .++. +.+| +-
T Consensus 135 ~P~~tg~~ls~~-~---l~~L~~~~nv~giK~s~~------------------~~~~~~~~~~~~~~~~~-v~~G---~d 188 (289)
T PF00701_consen 135 NPARTGNDLSPE-T---LARLAKIPNVVGIKDSSG------------------DLERLIQLLRAVGPDFS-VFCG---DD 188 (289)
T ss_dssp BHHHHSSTSHHH-H---HHHHHTSTTEEEEEESSS------------------BHHHHHHHHHHSSTTSE-EEES---SG
T ss_pred CCCccccCCCHH-H---HHHHhcCCcEEEEEcCch------------------hHHHHHHHhhhcccCee-eecc---cc
Confidence 441111 11222 2 233433233444443221 133344444443 2443 4455 33
Q ss_pred HHHHHHHHhCCChhhhhHHHH
Q 020423 280 DEVNAALRKGAHHVMVGRAAY 300 (326)
Q Consensus 280 ~da~~~l~~GaD~V~iGRall 300 (326)
+.+...+..|+++++.+.+-+
T Consensus 189 ~~~~~~l~~G~~G~is~~~n~ 209 (289)
T PF00701_consen 189 ELLLPALAAGADGFISGLANV 209 (289)
T ss_dssp GGHHHHHHTTSSEEEESGGGT
T ss_pred ccccccccccCCEEEEccccc
Confidence 346678889999999887644
|
The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A .... |
| >cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases | Back alignment and domain information |
|---|
Probab=95.20 E-value=0.41 Score=44.34 Aligned_cols=151 Identities=11% Similarity=0.195 Sum_probs=97.9
Q ss_pred CCCcEEEEecCC-CHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEe
Q 020423 123 EQHPIVLQIGGS-NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKC 201 (326)
Q Consensus 123 ~~~piivQL~g~-~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~ 201 (326)
...|++++|-|. +.+.. .++.++||+-|-+-.+. . .++.+.+..+++++..++. |+.|-.-+
T Consensus 68 ~~VPV~lHLDH~~~~~~i----~~ai~~GftSVMiD~S~-l-----------~~eeNi~~t~~vv~~ah~~-gv~VEaEl 130 (276)
T cd00947 68 ASVPVALHLDHGSSFELI----KRAIRAGFSSVMIDGSH-L-----------PFEENVAKTKEVVELAHAY-GVSVEAEL 130 (276)
T ss_pred CCCCEEEECCCCCCHHHH----HHHHHhCCCEEEeCCCC-C-----------CHHHHHHHHHHHHHHHHHc-CCeEEEEE
Confidence 467899999664 33322 45567899999886532 1 2336678888888877553 44444332
Q ss_pred cc--CCCC--------CccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEE
Q 020423 202 RI--GVDD--------HDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFT 271 (326)
Q Consensus 202 r~--g~~~--------~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVI 271 (326)
-. |.++ ..++++..+ ..++.|+|.+-++-++.. +.+.+ ..+.++++.++++.+.. ++|++
T Consensus 131 G~i~g~e~~~~~~~~~~T~pe~a~~----Fv~~TgvD~LAvsiGt~H-G~Y~~----~~p~L~~~~L~~i~~~~-~vPLV 200 (276)
T cd00947 131 GRIGGEEDGVVGDEGLLTDPEEAEE----FVEETGVDALAVAIGTSH-GAYKG----GEPKLDFDRLKEIAERV-NVPLV 200 (276)
T ss_pred eeecCccCCcccccccCCCHHHHHH----HHHHHCCCEEEeccCccc-cccCC----CCCccCHHHHHHHHHHh-CCCEE
Confidence 11 1111 123444433 445679999998866541 11110 12457799999998775 99999
Q ss_pred EeCCCCCHH-HHHHHHHhCCChhhhhHHHH
Q 020423 272 LNGGINTVD-EVNAALRKGAHHVMVGRAAY 300 (326)
Q Consensus 272 a~GgI~s~~-da~~~l~~GaD~V~iGRall 300 (326)
.=||=..++ ++.++++.|+.=|-+++.+.
T Consensus 201 lHGgSG~~~e~~~~ai~~Gi~KiNi~T~l~ 230 (276)
T cd00947 201 LHGGSGIPDEQIRKAIKLGVCKININTDLR 230 (276)
T ss_pred EeCCCCCCHHHHHHHHHcCCeEEEeChHHH
Confidence 999988774 58889999988888888864
|
TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures. |
| >PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=95.20 E-value=0.15 Score=47.35 Aligned_cols=95 Identities=15% Similarity=0.152 Sum_probs=58.4
Q ss_pred HHHHHHHHHhcC-CCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccH-HHHH
Q 020423 182 VGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKY-EYYY 259 (326)
Q Consensus 182 l~eiv~avr~~~-~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~-~~i~ 259 (326)
+.+.++.+|+.. ..++.|- .++.++..+ .+ ++|+|.|-+..-+. ... +.+.
T Consensus 169 i~~av~~~r~~~~~~kIeVE-------v~~leea~~----a~-~agaDiI~LDn~~~---------------e~l~~~v~ 221 (278)
T PRK08385 169 LEEAIRRAKEFSVYKVVEVE-------VESLEDALK----AA-KAGADIIMLDNMTP---------------EEIREVIE 221 (278)
T ss_pred HHHHHHHHHHhCCCCcEEEE-------eCCHHHHHH----HH-HcCcCEEEECCCCH---------------HHHHHHHH
Confidence 345555555543 2334432 234555433 33 58999987764321 112 2222
Q ss_pred HHHhcC--CCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhCCc
Q 020423 260 ALLRDF--PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW 304 (326)
Q Consensus 260 ~i~~~~--~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~dP~ 304 (326)
.+.+.. +++.+.++||| +.+.+.++.++|+|.+.+|.....-|+
T Consensus 222 ~l~~~~~~~~~~leaSGGI-~~~ni~~yA~tGvD~Is~galt~sa~~ 267 (278)
T PRK08385 222 ALKREGLRERVKIEVSGGI-TPENIEEYAKLDVDVISLGALTHSVRN 267 (278)
T ss_pred HHHhcCcCCCEEEEEECCC-CHHHHHHHHHcCCCEEEeChhhcCCCc
Confidence 233222 47889999999 999999999999999999987663443
|
|
| >PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional | Back alignment and domain information |
|---|
Probab=95.18 E-value=2.4 Score=38.63 Aligned_cols=201 Identities=12% Similarity=0.047 Sum_probs=104.7
Q ss_pred CccccccCeecCCcEEEccCCC-CChHHHHHH---HHHcCCCcEEEecceeecccccccc-----chhhhhh-cCCCCCc
Q 020423 57 TKAEMVARQYLPPWFSVAPMMD-WTDNHYRTL---ARLISKHAWLYTEMLAAETIIYQQG-----NLDRFLA-FSPEQHP 126 (326)
Q Consensus 57 ~~p~~ig~~~l~nrivlAPM~~-~s~~~~r~~---~~~~Gg~gli~te~~~~~~~~~~~~-----~~~~~~~-~~~~~~p 126 (326)
...+++++....+..++|-.+. -|..++... +++.| +.++.-+........+..+ ..+.+.+ ..+.+-|
T Consensus 3 ~~~~~~~~~~~~~~~~iaGPC~vEs~e~~~~~a~~~~~~g-~~~~r~g~~kpRts~~sf~G~G~~gl~~L~~~~~~~Gl~ 81 (250)
T PRK13397 3 DIMSDFQNKTCSKNNFIVGPCSIESYDHIRLAASSAKKLG-YNYFRGGAYKPRTSAASFQGLGLQGIRYLHEVCQEFGLL 81 (250)
T ss_pred cceEEecCccCCCCcEEeccCccCCHHHHHHHHHHHHHcC-CCEEEecccCCCCCCcccCCCCHHHHHHHHHHHHHcCCC
Confidence 3456677777776566654443 355544433 44444 6676666554333222211 1222222 2345667
Q ss_pred EEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCC
Q 020423 127 IVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVD 206 (326)
Q Consensus 127 iivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~ 206 (326)
++-.++. +++ ++.+.+. .|.+.|- +..+++.++ ++++. ..+.||.+|-...
T Consensus 82 ~~Tev~d--~~~----v~~~~e~-vdilqIg---------------s~~~~n~~L----L~~va-~tgkPVilk~G~~-- 132 (250)
T PRK13397 82 SVSEIMS--ERQ----LEEAYDY-LDVIQVG---------------ARNMQNFEF----LKTLS-HIDKPILFKRGLM-- 132 (250)
T ss_pred EEEeeCC--HHH----HHHHHhc-CCEEEEC---------------cccccCHHH----HHHHH-ccCCeEEEeCCCC--
Confidence 7766643 322 2333443 6777772 222344444 44443 3589999984422
Q ss_pred CCccHHHHHHHHHHHhhhCCcc-EEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEe----CCCCC--H
Q 020423 207 DHDSYNQLCDFIYKVSSLSPTR-HFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLN----GGINT--V 279 (326)
Q Consensus 207 ~~~~~~e~~~~ia~~le~~Gvd-~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~----GgI~s--~ 279 (326)
.+++|+...+ +.+.+.|.. .+.+|-++..+.. ......+...+..+++.+ ++|||.. +|.+. +
T Consensus 133 --~t~~e~~~A~-e~i~~~Gn~~i~L~eRg~~~Y~~------~~~n~~dl~ai~~lk~~~-~lPVivd~SHs~G~r~~v~ 202 (250)
T PRK13397 133 --ATIEEYLGAL-SYLQDTGKSNIILCERGVRGYDV------ETRNMLDIMAVPIIQQKT-DLPIIVDVSHSTGRRDLLL 202 (250)
T ss_pred --CCHHHHHHHH-HHHHHcCCCeEEEEccccCCCCC------ccccccCHHHHHHHHHHh-CCCeEECCCCCCcccchHH
Confidence 3455665543 344567774 4555622221110 111134455666666555 8999884 44433 2
Q ss_pred HHHHHHHHhCCChhhhhH
Q 020423 280 DEVNAALRKGAHHVMVGR 297 (326)
Q Consensus 280 ~da~~~l~~GaD~V~iGR 297 (326)
.-+..++..|||+++|=+
T Consensus 203 ~~a~AAvA~GAdGl~IE~ 220 (250)
T PRK13397 203 PAAKIAKAVGANGIMMEV 220 (250)
T ss_pred HHHHHHHHhCCCEEEEEe
Confidence 456677779999888754
|
|
| >PRK04147 N-acetylneuraminate lyase; Provisional | Back alignment and domain information |
|---|
Probab=95.18 E-value=2.7 Score=39.12 Aligned_cols=67 Identities=16% Similarity=0.195 Sum_probs=51.0
Q ss_pred CCCCcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEe
Q 020423 122 PEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKC 201 (326)
Q Consensus 122 ~~~~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~ 201 (326)
....|++++....+.++-.+.++.++++|+|++-+.. |... . ...+-+.+-.+.|.++++.|+.+=-
T Consensus 71 ~~~~~viagvg~~~t~~ai~~a~~a~~~Gad~v~v~~--P~y~-------~----~~~~~l~~~f~~va~a~~lPv~iYn 137 (293)
T PRK04147 71 KGKVKLIAQVGSVNTAEAQELAKYATELGYDAISAVT--PFYY-------P----FSFEEICDYYREIIDSADNPMIVYN 137 (293)
T ss_pred CCCCCEEecCCCCCHHHHHHHHHHHHHcCCCEEEEeC--CcCC-------C----CCHHHHHHHHHHHHHhCCCCEEEEe
Confidence 4456899999888999999999999999999999863 3211 1 1245677777777777888988753
|
|
| >TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic | Back alignment and domain information |
|---|
Probab=95.16 E-value=0.077 Score=50.15 Aligned_cols=66 Identities=20% Similarity=0.291 Sum_probs=47.0
Q ss_pred HHHHhhh-CCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhh
Q 020423 218 IYKVSSL-SPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVG 296 (326)
Q Consensus 218 ia~~le~-~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iG 296 (326)
+..+++. .|+|+|++.... |++. ...+.++.+++.+++ +.+..|.|.|++++.++++.|||+|-||
T Consensus 112 ~~~L~~a~~~~d~iviD~Ah----Ghs~--------~~i~~ik~ir~~~p~-~~viaGNV~T~e~a~~Li~aGAD~ikVg 178 (343)
T TIGR01305 112 MTSILEAVPQLKFICLDVAN----GYSE--------HFVEFVKLVREAFPE-HTIMAGNVVTGEMVEELILSGADIVKVG 178 (343)
T ss_pred HHHHHhcCCCCCEEEEECCC----CcHH--------HHHHHHHHHHhhCCC-CeEEEecccCHHHHHHHHHcCCCEEEEc
Confidence 3444442 369999997543 2211 125667778777755 5677899999999999999999998766
|
A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences. |
| >TIGR01182 eda Entner-Doudoroff aldolase | Back alignment and domain information |
|---|
Probab=95.16 E-value=0.1 Score=46.17 Aligned_cols=67 Identities=15% Similarity=0.226 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCC
Q 020423 211 YNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGA 290 (326)
Q Consensus 211 ~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~Ga 290 (326)
.++..+ +++.+.+.|++.+.|.-++. ...+.++++++++++ -++++|-|.|.++++++++.||
T Consensus 19 ~e~a~~-~~~al~~~Gi~~iEit~~t~---------------~a~~~i~~l~~~~~~-~~vGAGTVl~~~~a~~a~~aGA 81 (204)
T TIGR01182 19 VDDALP-LAKALIEGGLRVLEVTLRTP---------------VALDAIRLLRKEVPD-ALIGAGTVLNPEQLRQAVDAGA 81 (204)
T ss_pred HHHHHH-HHHHHHHcCCCEEEEeCCCc---------------cHHHHHHHHHHHCCC-CEEEEEeCCCHHHHHHHHHcCC
Confidence 334444 45566689999999986442 236778888887766 4699999999999999999999
Q ss_pred Chhh
Q 020423 291 HHVM 294 (326)
Q Consensus 291 D~V~ 294 (326)
++++
T Consensus 82 ~Fiv 85 (204)
T TIGR01182 82 QFIV 85 (204)
T ss_pred CEEE
Confidence 9984
|
2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida |
| >cd00408 DHDPS-like Dihydrodipicolinate synthase family | Back alignment and domain information |
|---|
Probab=95.09 E-value=0.81 Score=42.17 Aligned_cols=126 Identities=14% Similarity=0.100 Sum_probs=77.1
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC--CCcEEEEeccCCCCCccHH
Q 020423 135 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYN 212 (326)
Q Consensus 135 ~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~--~~pv~vK~r~g~~~~~~~~ 212 (326)
+.+.+.+-.+.+.+.|.++|-++... ++ +-+ -..+.-.++++.+++.+ +.|+.+.+... +..
T Consensus 16 D~~~~~~~i~~l~~~Gv~gi~~~Gst--------GE-~~~--ls~~Er~~l~~~~~~~~~~~~~vi~gv~~~-----~~~ 79 (281)
T cd00408 16 DLDALRRLVEFLIEAGVDGLVVLGTT--------GE-APT--LTDEERKEVIEAVVEAVAGRVPVIAGVGAN-----STR 79 (281)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCC--------cc-ccc--CCHHHHHHHHHHHHHHhCCCCeEEEecCCc-----cHH
Confidence 67889999999999999999987531 22 111 12233344444444443 47887765442 334
Q ss_pred HHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEE------eCCCCCHHHHHHHH
Q 020423 213 QLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTL------NGGINTVDEVNAAL 286 (326)
Q Consensus 213 e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa------~GgI~s~~da~~~l 286 (326)
+..+ .++..++.|+|.+.+....... .+ ...-.+++.++.+. +++||+. +|--.+++.+.++.
T Consensus 80 ~~i~-~a~~a~~~Gad~v~v~pP~y~~--~~-------~~~~~~~~~~ia~~-~~~pi~iYn~P~~tg~~l~~~~~~~L~ 148 (281)
T cd00408 80 EAIE-LARHAEEAGADGVLVVPPYYNK--PS-------QEGIVAHFKAVADA-SDLPVILYNIPGRTGVDLSPETIARLA 148 (281)
T ss_pred HHHH-HHHHHHHcCCCEEEECCCcCCC--CC-------HHHHHHHHHHHHhc-CCCCEEEEECccccCCCCCHHHHHHHh
Confidence 4555 4556678999999987532110 00 01124556666665 5889873 46677888877776
Q ss_pred H
Q 020423 287 R 287 (326)
Q Consensus 287 ~ 287 (326)
+
T Consensus 149 ~ 149 (281)
T cd00408 149 E 149 (281)
T ss_pred c
Confidence 5
|
A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family. |
| >cd00408 DHDPS-like Dihydrodipicolinate synthase family | Back alignment and domain information |
|---|
Probab=95.06 E-value=2.8 Score=38.61 Aligned_cols=139 Identities=17% Similarity=0.147 Sum_probs=84.4
Q ss_pred CCCCcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEe
Q 020423 122 PEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKC 201 (326)
Q Consensus 122 ~~~~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~ 201 (326)
....|++++..+.+.++..+.++.++++|+|+|-+.. |... . ...+-+.+..++|.++++.|+.+--
T Consensus 64 ~~~~~vi~gv~~~~~~~~i~~a~~a~~~Gad~v~v~p--P~y~-------~----~~~~~~~~~~~~ia~~~~~pi~iYn 130 (281)
T cd00408 64 AGRVPVIAGVGANSTREAIELARHAEEAGADGVLVVP--PYYN-------K----PSQEGIVAHFKAVADASDLPVILYN 130 (281)
T ss_pred CCCCeEEEecCCccHHHHHHHHHHHHHcCCCEEEECC--CcCC-------C----CCHHHHHHHHHHHHhcCCCCEEEEE
Confidence 3467899999998999999999999999999999953 3211 1 2356677778888777899998865
Q ss_pred ccCCCC-CccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCC-CceEEEeCCCCCH
Q 020423 202 RIGVDD-HDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFP-DLTFTLNGGINTV 279 (326)
Q Consensus 202 r~g~~~-~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~-~iPVIa~GgI~s~ 279 (326)
.+.... .-+.+. +.++.+.-.+..|-.+. .+...+.++++... ++ .+.+|. -
T Consensus 131 ~P~~tg~~l~~~~----~~~L~~~~~v~giK~s~------------------~d~~~~~~~~~~~~~~~-~v~~G~---d 184 (281)
T cd00408 131 IPGRTGVDLSPET----IARLAEHPNIVGIKDSS------------------GDLDRLTRLIALLGPDF-AVLSGD---D 184 (281)
T ss_pred CccccCCCCCHHH----HHHHhcCCCEEEEEeCC------------------CCHHHHHHHHHhcCCCe-EEEEcc---h
Confidence 543211 112322 23333222343433221 12334444444432 33 344453 3
Q ss_pred HHHHHHHHhCCChhhhhHHH
Q 020423 280 DEVNAALRKGAHHVMVGRAA 299 (326)
Q Consensus 280 ~da~~~l~~GaD~V~iGRal 299 (326)
+.+...+..|+++.+.|.+-
T Consensus 185 ~~~~~~l~~G~~G~i~~~~n 204 (281)
T cd00408 185 DLLLPALALGADGAISGAAN 204 (281)
T ss_pred HHHHHHHHcCCCEEEehHHh
Confidence 45556677889888888654
|
A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family. |
| >PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=95.03 E-value=0.48 Score=44.11 Aligned_cols=150 Identities=13% Similarity=0.158 Sum_probs=92.9
Q ss_pred CCcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEec-
Q 020423 124 QHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCR- 202 (326)
Q Consensus 124 ~~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r- 202 (326)
..|++++|-|... -+...++.++||+-|-+-.+. . .++.+.+..+++++..++ .|+.|-.-+-
T Consensus 74 ~VPValHLDH~~~---~e~i~~ai~~GftSVMiDgS~-l-----------p~eeNi~~T~~vv~~Ah~-~gvsVEaElG~ 137 (284)
T PRK12737 74 NIPLALHLDHHED---LDDIKKKVRAGIRSVMIDGSH-L-----------SFEENIAIVKEVVEFCHR-YDASVEAELGR 137 (284)
T ss_pred CCCEEEECCCCCC---HHHHHHHHHcCCCeEEecCCC-C-----------CHHHHHHHHHHHHHHHHH-cCCEEEEEEee
Confidence 4567777654321 123455666777777775431 1 233667888888887654 3544443322
Q ss_pred c-CCCC----------CccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEE
Q 020423 203 I-GVDD----------HDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFT 271 (326)
Q Consensus 203 ~-g~~~----------~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVI 271 (326)
+ |.++ ..+.++..+ ..++.|+|.+-|+-++.. +-+. ..|.++++.++++.+.. ++|++
T Consensus 138 igg~e~~~~~~~~~~~~T~peeA~~----Fv~~TgvD~LAvaiGt~H-G~y~-----~~p~Ld~~~L~~I~~~~-~iPLV 206 (284)
T PRK12737 138 LGGQEDDLVVDEKDAMYTNPDAAAE----FVERTGIDSLAVAIGTAH-GLYK-----GEPKLDFERLAEIREKV-SIPLV 206 (284)
T ss_pred ccCccCCcccccccccCCCHHHHHH----HHHHhCCCEEeeccCccc-cccC-----CCCcCCHHHHHHHHHHh-CCCEE
Confidence 1 1111 123444444 445689999999866641 1111 12446799999987664 99999
Q ss_pred EeCCCCCHH-HHHHHHHhCCChhhhhHHHH
Q 020423 272 LNGGINTVD-EVNAALRKGAHHVMVGRAAY 300 (326)
Q Consensus 272 a~GgI~s~~-da~~~l~~GaD~V~iGRall 300 (326)
.=||=..++ ++.++++.|+.=|=+++.+.
T Consensus 207 lHGgSG~~~e~~~kai~~Gi~KiNi~T~l~ 236 (284)
T PRK12737 207 LHGASGVPDEDVKKAISLGICKVNVATELK 236 (284)
T ss_pred EeCCCCCCHHHHHHHHHCCCeEEEeCcHHH
Confidence 999877665 57778889988888888764
|
|
| >COG0284 PyrF Orotidine-5'-phosphate decarboxylase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.00 E-value=0.78 Score=41.63 Aligned_cols=146 Identities=18% Similarity=0.224 Sum_probs=77.8
Q ss_pred CCCCCcEEEEecC-CCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEE
Q 020423 121 SPEQHPIVLQIGG-SNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSV 199 (326)
Q Consensus 121 ~~~~~piivQL~g-~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~v 199 (326)
++.++++++-+-- .-|.....+++.+.+.|+|.+.+|. |+| .+-+....+...+...+.+.|
T Consensus 59 ~~~~~~VflDlK~~DIpnT~~~~~~~~~~~g~d~vtvH~------------~~G-----~~~~~~~~e~~~~~~~~vl~v 121 (240)
T COG0284 59 KARGKKVFLDLKLADIPNTVALAAKAAADLGADAVTVHA------------FGG-----FDMLRAAKEALEAGGPFVLAV 121 (240)
T ss_pred HHhCCceEEeeecccchHHHHHHHHHhhhcCCcEEEEeC------------cCC-----HHHHHHHHHHHhhcCceEEEE
Confidence 3345588888854 3467777888889999999999984 332 233334444332221122222
Q ss_pred EeccCCCCC--------ccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEE
Q 020423 200 KCRIGVDDH--------DSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFT 271 (326)
Q Consensus 200 K~r~g~~~~--------~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVI 271 (326)
-.-.+..+. ..+.+.+..+++....+|.|.+.++... ...+++... ++. .|
T Consensus 122 T~lts~~~~~~~~~~~~~~~~~~v~~~a~~~~~~G~dgvv~~~~e------------------~~~ir~~~g--~~~-~i 180 (240)
T COG0284 122 TSLTSMGELQLAELGINSSLEEQVLRLAKLAGEAGLDGVVCSAEE------------------VAAIREILG--PDF-LI 180 (240)
T ss_pred EeCCCchhhhhhhccccchHHHHHHHHHHHhccCCceEEEcCHHH------------------HHHHHHhcC--CCc-EE
Confidence 111111111 1233333445555566788888765321 122222221 133 23
Q ss_pred EeCCCCC------HHH---HHHHHHhCCChhhhhHHHHhCCc
Q 020423 272 LNGGINT------VDE---VNAALRKGAHHVMVGRAAYQNPW 304 (326)
Q Consensus 272 a~GgI~s------~~d---a~~~l~~GaD~V~iGRall~dP~ 304 (326)
.+=||+- ... ..+++..|+|.+.+||+++..++
T Consensus 181 ltPGIg~~~~~gdQ~~~~t~~~A~~~Gad~ivVGR~I~~a~~ 222 (240)
T COG0284 181 LTPGIGAGSQGGDQGRVMTPGEAVRAGADYIVVGRPITQAGD 222 (240)
T ss_pred ECCCcCcCcCCCCcccccCHHHHHhcCCCEEEEChhhhcCCC
Confidence 3334443 222 33456689999999999997655
|
|
| >cd04725 OMP_decarboxylase_like Orotidine 5'-phosphate decarboxylase (ODCase) is a dimeric enzyme that decarboxylates orotidine 5'-monophosphate (OMP) to form uridine 5'-phosphate (UMP), an essential step in the pyrimidine biosynthetic pathway | Back alignment and domain information |
|---|
Probab=95.00 E-value=0.65 Score=41.32 Aligned_cols=143 Identities=17% Similarity=0.164 Sum_probs=86.0
Q ss_pred CCCcEEEEecCCCH-HHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC-CCcEEEE
Q 020423 123 EQHPIVLQIGGSNL-DNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVK 200 (326)
Q Consensus 123 ~~~piivQL~g~~~-~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~-~~pv~vK 200 (326)
.+.++++-+--.|. .....+++.+.++|+|.+.+|.. +| .+-+...++..++.- ++-+.+.
T Consensus 48 ~~~~i~~DlK~~DIg~tv~~~~~~~~~~gad~~Tvh~~------------~G-----~~~l~~~~~~~~~~~~~~~~v~~ 110 (216)
T cd04725 48 LGFLVFLDLKLGDIPNTVAAAAEALLGLGADAVTVHPY------------GG-----SDMLKAALEAAEEKGKGLFAVTV 110 (216)
T ss_pred CCCcEEEEeecCchHHHHHHHHHHHHhcCCCEEEECCc------------CC-----HHHHHHHHHHHhccCCeEEEEEc
Confidence 44788888865554 44555666777889999999852 21 344555555544321 1122333
Q ss_pred eccCCCCC-------ccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEe
Q 020423 201 CRIGVDDH-------DSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLN 273 (326)
Q Consensus 201 ~r~g~~~~-------~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~ 273 (326)
++ +++.. ...++....+++..++.|++.+.+++.. .+.+.+. ..++.+ +.+
T Consensus 111 ls-s~~~~~~q~~~~~~~~~~~~~~~~~a~~~g~~G~V~~~~~------------------~~~i~~~--~~~~~~-~lt 168 (216)
T cd04725 111 LS-SPGALDLQEGIPGSLEDLVERLAKLAREAGVDGVVCGATE------------------PEALRRA--LGPDFL-ILT 168 (216)
T ss_pred CC-CCCHHHHHhhhcCCHHHHHHHHHHHHHHHCCCEEEECCcc------------------hHHHHHh--hCCCCe-EEc
Confidence 33 22211 0234445556667778898888776532 1222222 223555 778
Q ss_pred CCCCCH---------HHHHHHHHhCCChhhhhHHHHhCCc
Q 020423 274 GGINTV---------DEVNAALRKGAHHVMVGRAAYQNPW 304 (326)
Q Consensus 274 GgI~s~---------~da~~~l~~GaD~V~iGRall~dP~ 304 (326)
+||+-. .+..++++.|++++.+||+++..++
T Consensus 169 PGI~~~~~~~dq~r~~~~~~a~~~g~~~ivvGR~I~~a~~ 208 (216)
T cd04725 169 PGIGAQGSGDDQKRGGTPEDAIRAGADYIVVGRPITQAAD 208 (216)
T ss_pred CCcCCCCCccccccccCHHHHHHcCCcEEEEChhhccCCC
Confidence 888742 2567788899999999999998877
|
In mammals, UMP synthase contains two domains: the orotate phosphoribosyltransferase (OPRTase) domain that catalyzes the transfer of phosphoribosyl 5'-pyrophosphate (PRPP) to orotate to form OMP, and the orotidine-5'-phosphate decarboxylase (ODCase) domain that decarboxylates OMP to form UMP. |
| >PRK05835 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=94.97 E-value=0.64 Score=43.66 Aligned_cols=151 Identities=12% Similarity=0.177 Sum_probs=92.9
Q ss_pred CcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEec-c
Q 020423 125 HPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCR-I 203 (326)
Q Consensus 125 ~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r-~ 203 (326)
.|+.+.|-|..- .+..+++.++||+-|-+-.+. . .++.+.+..+++++..+. .++.|-.-+- +
T Consensus 75 VPValHLDHg~~---~e~i~~ai~~GftSVM~DgS~-l-----------~~eeNi~~T~~vve~Ah~-~gv~VEaElG~v 138 (307)
T PRK05835 75 IPVALHLDHGTT---FESCEKAVKAGFTSVMIDASH-H-----------AFEENLELTSKVVKMAHN-AGVSVEAELGRL 138 (307)
T ss_pred CeEEEECCCCCC---HHHHHHHHHcCCCEEEEeCCC-C-----------CHHHHHHHHHHHHHHHHH-cCCEEEEEeccc
Confidence 577777755421 223445667788877775431 1 123567777787777643 3444443321 1
Q ss_pred -CCCC----------CccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEE
Q 020423 204 -GVDD----------HDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTL 272 (326)
Q Consensus 204 -g~~~----------~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa 272 (326)
|.++ ..++++.. +..++.|+|++-++-++.. +-+.. ...|.++|+.+.++.+.. ++|++.
T Consensus 139 gg~ed~~~~~~~~~~~TdPeeA~----~Fv~~TgvD~LAvaiGt~H-G~Yk~---~~~p~L~f~~L~~I~~~~-~iPLVL 209 (307)
T PRK05835 139 MGIEDNISVDEKDAVLVNPKEAE----QFVKESQVDYLAPAIGTSH-GAFKF---KGEPKLDFERLQEVKRLT-NIPLVL 209 (307)
T ss_pred CCccCCcccccccccCCCHHHHH----HHHHhhCCCEEEEccCccc-cccCC---CCCCccCHHHHHHHHHHh-CCCEEE
Confidence 1111 11244443 3455689999999866541 11110 012457899999987765 999999
Q ss_pred eCCCCCHH----------------------HHHHHHHhCCChhhhhHHHH
Q 020423 273 NGGINTVD----------------------EVNAALRKGAHHVMVGRAAY 300 (326)
Q Consensus 273 ~GgI~s~~----------------------da~~~l~~GaD~V~iGRall 300 (326)
=||-..++ ++.++++.|..=|=+++.+.
T Consensus 210 HGgSGip~e~~~~~~~~g~~~~~~~g~~~e~~~kai~~GI~KiNi~T~l~ 259 (307)
T PRK05835 210 HGASAIPDDVRKSYLDAGGDLKGSKGVPFEFLQESVKGGINKVNTDTDLR 259 (307)
T ss_pred eCCCCCchHHhhhhhhhccccccccCCCHHHHHHHHHcCceEEEeChHHH
Confidence 99988787 68888888988888887764
|
|
| >PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=94.96 E-value=0.25 Score=45.99 Aligned_cols=65 Identities=17% Similarity=0.176 Sum_probs=45.7
Q ss_pred hCCccEEEEecCCcccCCCCcCCcCCCCCccH-HHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhC
Q 020423 224 LSPTRHFIIHSRKALLNGISPAENRTIPPLKY-EYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN 302 (326)
Q Consensus 224 ~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~-~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~d 302 (326)
++|+|.|-+..-+ +... +.+..+.+..+++.+.++||| +++.+.++.++|+|.+.+|.....-
T Consensus 217 ~~gaDiI~LDnm~---------------~e~vk~av~~~~~~~~~v~ieaSGGI-~~~ni~~yA~tGvD~Is~galt~sa 280 (289)
T PRK07896 217 AEGAELVLLDNFP---------------VWQTQEAVQRRDARAPTVLLESSGGL-TLDTAAAYAETGVDYLAVGALTHSV 280 (289)
T ss_pred HcCCCEEEeCCCC---------------HHHHHHHHHHHhccCCCEEEEEECCC-CHHHHHHHHhcCCCEEEeChhhcCC
Confidence 5899999876321 1111 122222223457899999999 8999999999999999999876644
Q ss_pred Cc
Q 020423 303 PW 304 (326)
Q Consensus 303 P~ 304 (326)
|+
T Consensus 281 ~~ 282 (289)
T PRK07896 281 PV 282 (289)
T ss_pred Cc
Confidence 44
|
|
| >PRK06843 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=94.96 E-value=0.085 Score=51.38 Aligned_cols=62 Identities=21% Similarity=0.260 Sum_probs=47.1
Q ss_pred hhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhh
Q 020423 222 SSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVG 296 (326)
Q Consensus 222 le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iG 296 (326)
+.++|+|.|.+..... .+ ....+.++++++++++++ +..|+|.|.+++..+++.|||+|.+|
T Consensus 161 lv~aGvDvI~iD~a~g----~~--------~~~~~~v~~ik~~~p~~~-vi~g~V~T~e~a~~l~~aGaD~I~vG 222 (404)
T PRK06843 161 LVKAHVDILVIDSAHG----HS--------TRIIELVKKIKTKYPNLD-LIAGNIVTKEAALDLISVGADCLKVG 222 (404)
T ss_pred HHhcCCCEEEEECCCC----CC--------hhHHHHHHHHHhhCCCCc-EEEEecCCHHHHHHHHHcCCCEEEEC
Confidence 3469999999865431 11 112567888888777877 56788999999999999999998776
|
|
| >PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=94.91 E-value=0.14 Score=48.63 Aligned_cols=82 Identities=20% Similarity=0.291 Sum_probs=52.2
Q ss_pred cEEEEeccCCCCCccHHHHHHHHHHHhhhCCc--cEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEe
Q 020423 196 PVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPT--RHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLN 273 (326)
Q Consensus 196 pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gv--d~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~ 273 (326)
.+.+-+..+... +..++ +.+++ ++|+ |.|.+.... |++ ....+.++++++.++++||| .
T Consensus 85 ~l~v~~~vg~~~-~~~~~----~~~Lv-~ag~~~d~i~iD~a~----gh~--------~~~~e~I~~ir~~~p~~~vi-~ 145 (326)
T PRK05458 85 GLIASISVGVKD-DEYDF----VDQLA-AEGLTPEYITIDIAH----GHS--------DSVINMIQHIKKHLPETFVI-A 145 (326)
T ss_pred ccEEEEEecCCH-HHHHH----HHHHH-hcCCCCCEEEEECCC----Cch--------HHHHHHHHHHHhhCCCCeEE-E
Confidence 345655665322 12222 33343 4754 999996543 111 11256688888887667654 5
Q ss_pred CCCCCHHHHHHHHHhCCChhhhh
Q 020423 274 GGINTVDEVNAALRKGAHHVMVG 296 (326)
Q Consensus 274 GgI~s~~da~~~l~~GaD~V~iG 296 (326)
|.|.|.+++..+.+.|+|++.+|
T Consensus 146 g~V~t~e~a~~l~~aGad~i~vg 168 (326)
T PRK05458 146 GNVGTPEAVRELENAGADATKVG 168 (326)
T ss_pred EecCCHHHHHHHHHcCcCEEEEC
Confidence 66889999999999999998866
|
|
| >PRK02227 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.86 E-value=0.6 Score=42.13 Aligned_cols=130 Identities=16% Similarity=0.087 Sum_probs=70.6
Q ss_pred HHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHHHH
Q 020423 142 ATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKV 221 (326)
Q Consensus 142 aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia~~ 221 (326)
-|..+.++|+|-|++. +...|.-|+ +.|..+.+|++.+... .|++..+.--..+.. +....+..
T Consensus 12 EA~~Al~~GaDiIDvK-------~P~~GaLGA---~~p~vir~Iv~~~~~~--~pvSAtiGD~p~~p~---~~~~aa~~- 75 (238)
T PRK02227 12 EALEALAGGADIIDVK-------NPKEGSLGA---NFPWVIREIVAAVPGR--KPVSATIGDVPYKPG---TISLAALG- 75 (238)
T ss_pred HHHHHHhcCCCEEEcc-------CCCCCCCCC---CCHHHHHHHHHHhCCC--CCceeeccCCCCCch---HHHHHHHH-
Confidence 4566778899999994 233455564 6688888888777543 577665432222222 22222222
Q ss_pred hhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHH---Hhc-CCCceEEEeCCCC-------CHHHHHHHH-HhC
Q 020423 222 SSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYAL---LRD-FPDLTFTLNGGIN-------TVDEVNAAL-RKG 289 (326)
Q Consensus 222 le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i---~~~-~~~iPVIa~GgI~-------s~~da~~~l-~~G 289 (326)
....|+|||-|--- +... .....+.+..+ .+. ..+..|++++=-. ++.++.+.. +.|
T Consensus 76 ~a~~GvDyVKvGl~-----~~~~------~~~~~~~~~~v~~a~~~~~~~~~vVav~yaD~~r~~~~~~~~l~~~a~~aG 144 (238)
T PRK02227 76 AAATGADYVKVGLY-----GGKT------AEEAVEVMKAVVRAVKDLDPGKIVVAAGYADAHRVGSVSPLSLPAIAADAG 144 (238)
T ss_pred HHhhCCCEEEEcCC-----CCCc------HHHHHHHHHHHHHhhhhcCCCCeEEEEEecccccccCCChHHHHHHHHHcC
Confidence 23589999987321 1000 00112333222 222 2356777765322 444444444 599
Q ss_pred CChhhhhHH
Q 020423 290 AHHVMVGRA 298 (326)
Q Consensus 290 aD~V~iGRa 298 (326)
++++|+=|+
T Consensus 145 f~g~MlDTa 153 (238)
T PRK02227 145 FDGAMLDTA 153 (238)
T ss_pred CCEEEEecc
Confidence 999999554
|
|
| >COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.85 E-value=1 Score=41.07 Aligned_cols=190 Identities=17% Similarity=0.163 Sum_probs=103.7
Q ss_pred CcEEEccCCCCChHHHHHHHH--HcCCCcEEEecceeeccccccccc-----hhhhhh-cCCCCCcEEEEecCCCHHHHH
Q 020423 69 PWFSVAPMMDWTDNHYRTLAR--LISKHAWLYTEMLAAETIIYQQGN-----LDRFLA-FSPEQHPIVLQIGGSNLDNLA 140 (326)
Q Consensus 69 nrivlAPM~~~s~~~~r~~~~--~~Gg~gli~te~~~~~~~~~~~~~-----~~~~~~-~~~~~~piivQL~g~~~~~f~ 140 (326)
.+++..|-+--+..+.+..++ ...|+.++-.+...+....|+-+. +..+.+ -++.|-|++..++ ++.++.
T Consensus 46 ~~viAGPCsvEs~E~i~~~A~~vk~~Ga~~lRGgafKPRTSPYsFQGlge~gL~~l~~a~~~~Gl~vvtEvm--~~~~~e 123 (286)
T COG2876 46 LRVIAGPCSVESEEQVRETAESVKAAGAKALRGGAFKPRTSPYSFQGLGEEGLKLLKRAADETGLPVVTEVM--DVRDVE 123 (286)
T ss_pred eEEEecCcccCCHHHHHHHHHHHHHcchhhccCCcCCCCCCcccccccCHHHHHHHHHHHHHcCCeeEEEec--CHHHHH
Confidence 356666766556676665532 233467777776665544433221 111212 3557788888874 555555
Q ss_pred HHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHHH
Q 020423 141 KATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYK 220 (326)
Q Consensus 141 ~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia~ 220 (326)
.+++. +|.+.| |+..+++.+++.++ .+.+.||.+|-..+ .+++|.+.. ++
T Consensus 124 ~~~~y-----~Dilqv---------------GARNMQNF~LLke~-----G~~~kPvLLKRg~~----aTieEwL~A-AE 173 (286)
T COG2876 124 AAAEY-----ADILQV---------------GARNMQNFALLKEV-----GRQNKPVLLKRGLS----ATIEEWLNA-AE 173 (286)
T ss_pred HHHhh-----hhHHHh---------------cccchhhhHHHHHh-----cccCCCeEEecCcc----ccHHHHHHH-HH
Confidence 54443 233333 44444566655544 44589999995554 467777653 44
Q ss_pred HhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCC----CCCHH--HHHHHHHhCCChhh
Q 020423 221 VSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGG----INTVD--EVNAALRKGAHHVM 294 (326)
Q Consensus 221 ~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~Gg----I~s~~--da~~~l~~GaD~V~ 294 (326)
..-..|-.-+++--|. ....+.......+...+..+++. .++|||+.=- =++.- .+..++..|||++|
T Consensus 174 YI~s~GN~~vILCERG-----IRtfe~~TRntLDi~aV~~~kq~-THLPVivDpSH~~Grr~lv~pla~AA~AaGAdglm 247 (286)
T COG2876 174 YILSHGNGNVILCERG-----IRTFEKATRNTLDISAVPILKQE-THLPVIVDPSHATGRRDLVEPLAKAAIAAGADGLM 247 (286)
T ss_pred HHHhCCCCcEEEEecc-----cccccccccceechHHHHHHHhh-cCCCEEECCCCcccchhhHHHHHHHHHhccCCeeE
Confidence 4445665555553221 11111122334556666666554 5999998522 22221 24455668999999
Q ss_pred hh
Q 020423 295 VG 296 (326)
Q Consensus 295 iG 296 (326)
+=
T Consensus 248 iE 249 (286)
T COG2876 248 IE 249 (286)
T ss_pred EE
Confidence 73
|
|
| >PRK02412 aroD 3-dehydroquinate dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=94.84 E-value=3.1 Score=38.02 Aligned_cols=97 Identities=18% Similarity=0.151 Sum_probs=66.6
Q ss_pred CcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC-CCcEEEEecc
Q 020423 125 HPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCRI 203 (326)
Q Consensus 125 ~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~-~~pv~vK~r~ 203 (326)
..+++-|.+.+.+++.+.++.+.+.|+|.||+-+. .|.. + .+.+.+.+++..+++.. +.|+.+-+|.
T Consensus 16 ~~i~v~l~~~~~~e~~~~~~~~~~~~aD~vElRlD----------~l~~-~-~~~~~~~~~~~~l~~~~~~~PiI~T~R~ 83 (253)
T PRK02412 16 PKIIVPIMGKTLEEVLAEALAISKYDADIIEWRAD----------FLEK-I-SDVESVLAAAPAIREKFAGKPLLFTFRT 83 (253)
T ss_pred cEEEEEeCCCCHHHHHHHHHHHhhcCCCEEEEEec----------hhhc-c-CCHHHHHHHHHHHHHhcCCCcEEEEECC
Confidence 35788999999999999999988889999999653 2221 1 24567778888888765 6899998887
Q ss_pred CCCCC---ccHHHHHHHHHHHhhhCC-ccEEEEec
Q 020423 204 GVDDH---DSYNQLCDFIYKVSSLSP-TRHFIIHS 234 (326)
Q Consensus 204 g~~~~---~~~~e~~~~ia~~le~~G-vd~I~v~~ 234 (326)
.++.. .+.++-.+.+...+ +.| +|+|+|.-
T Consensus 84 ~~eGG~~~~~~~~~~~ll~~~~-~~~~~d~vDiEl 117 (253)
T PRK02412 84 AKEGGEIALSDEEYLALIKAVI-KSGLPDYIDVEL 117 (253)
T ss_pred hhhCCCCCCCHHHHHHHHHHHH-hcCCCCEEEEec
Confidence 54322 12223333333333 467 89999963
|
|
| >cd03318 MLE Muconate Lactonizing Enzyme (MLE), an homooctameric enzyme, catalyses the conversion of cis,cis-muconate (CCM) to muconolactone (ML) in the catechol branch of the beta-ketoadipate pathway | Back alignment and domain information |
|---|
Probab=94.84 E-value=0.95 Score=43.47 Aligned_cols=82 Identities=10% Similarity=-0.010 Sum_probs=47.3
Q ss_pred ecCCCHHHHHHHHHHHHHCC-CCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCc
Q 020423 131 IGGSNLDNLAKATELANAYN-YDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHD 209 (326)
Q Consensus 131 L~g~~~~~f~~aA~~a~~aG-~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~ 209 (326)
+...++++..+.++...+.| |..+.+..|. ..++.-.+.++++|+.++..+ ++++.....-
T Consensus 138 ~~~~~~~~~~~~~~~~~~~G~f~~~KiKvg~----------------~~~~~d~~~v~avr~~~g~~~--~l~iDaN~~~ 199 (365)
T cd03318 138 LASGDTERDIAEAEEMLEAGRHRRFKLKMGA----------------RPPADDLAHVEAIAKALGDRA--SVRVDVNQAW 199 (365)
T ss_pred EeCCCHHHHHHHHHHHHhCCCceEEEEEeCC----------------CChHHHHHHHHHHHHHcCCCc--EEEEECCCCC
Confidence 33345565666666666788 9999997541 123334567788888775333 3343322223
Q ss_pred cHHHHHHHHHHHhhhCCccEEE
Q 020423 210 SYNQLCDFIYKVSSLSPTRHFI 231 (326)
Q Consensus 210 ~~~e~~~~ia~~le~~Gvd~I~ 231 (326)
+.++..++ .+.+++.++.+|.
T Consensus 200 ~~~~A~~~-~~~l~~~~~~~iE 220 (365)
T cd03318 200 DESTAIRA-LPRLEAAGVELIE 220 (365)
T ss_pred CHHHHHHH-HHHHHhcCcceee
Confidence 44555553 4556778887764
|
This pathway is used in soil microbes to breakdown lignin-derived aromatics, catechol and protocatechuate, to citric acid cycle intermediates. Some bacterial species are also capable of dehalogenating chloroaromatic compounds by the action of chloromuconate lactonizing enzymes (Cl-MLEs). MLEs are members of the enolase superfamily characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion. |
| >TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase | Back alignment and domain information |
|---|
Probab=94.84 E-value=0.24 Score=46.12 Aligned_cols=147 Identities=10% Similarity=0.027 Sum_probs=76.7
Q ss_pred HHHHHHHHC---------CCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccH
Q 020423 141 KATELANAY---------NYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSY 211 (326)
Q Consensus 141 ~aA~~a~~a---------G~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~ 211 (326)
-.|+.++++ ||++|-+...+-.......| + .++ ..+.+.+.++.|...+..||++-.-.| .+ .
T Consensus 20 ~SA~~~e~~~~~~~~~~~Gf~ai~~ss~~~a~s~G~pD--~-~~~-~~~e~~~~~~~I~~a~~~Pv~~D~d~G-g~---~ 91 (285)
T TIGR02320 20 LSALIAEEARVEVGGESLGFDGIWSSSLTDSTSRGVPD--I-EEA-SWTQRLDVVEFMFDVTTKPIILDGDTG-GN---F 91 (285)
T ss_pred HHHHHHHHhhhcccCcCCCcCEEEechHHHHHHCCCCC--c-CcC-CHHHHHHHHHHHHhhcCCCEEEecCCC-CC---H
Confidence 456778888 99999885321110001112 1 122 244455567777788899999987777 33 3
Q ss_pred HHHHHHHHHHhhhCCccEEEEecCCc-ccCCCCcCC--cCCCCCc-cHHHHHHHHhc--CCCceEEEeCC----CCCHHH
Q 020423 212 NQLCDFIYKVSSLSPTRHFIIHSRKA-LLNGISPAE--NRTIPPL-KYEYYYALLRD--FPDLTFTLNGG----INTVDE 281 (326)
Q Consensus 212 ~e~~~~ia~~le~~Gvd~I~v~~~~~-~~~g~~~~~--~~~~~~~-~~~~i~~i~~~--~~~iPVIa~Gg----I~s~~d 281 (326)
..+.+.+ +.++++|+..|++..... ...|+.+.. ...++.. ..+.++..++. ..+++|++--+ -...++
T Consensus 92 ~~v~r~V-~~l~~aGvaGi~iEDq~~pk~cg~~~~~~~~~l~s~ee~~~kI~Aa~~a~~~~~~~IiARTDa~~~~~~~~e 170 (285)
T TIGR02320 92 EHFRRLV-RKLERRGVSAVCIEDKLGLKKNSLFGNDVAQPQASVEEFCGKIRAGKDAQTTEDFMIIARVESLILGKGMED 170 (285)
T ss_pred HHHHHHH-HHHHHcCCeEEEEeccCCCccccccCCCCcccccCHHHHHHHHHHHHHhccCCCeEEEEecccccccCCHHH
Confidence 3343433 345679999999954321 111221110 0111110 12233333322 23677777622 113344
Q ss_pred H----HHHHHhCCChhhhh
Q 020423 282 V----NAALRKGAHHVMVG 296 (326)
Q Consensus 282 a----~~~l~~GaD~V~iG 296 (326)
+ ..+.+.|||+|++=
T Consensus 171 Ai~Ra~ay~eAGAD~ifv~ 189 (285)
T TIGR02320 171 ALKRAEAYAEAGADGIMIH 189 (285)
T ss_pred HHHHHHHHHHcCCCEEEec
Confidence 3 33445899999984
|
A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model. |
| >TIGR01093 aroD 3-dehydroquinate dehydratase, type I | Back alignment and domain information |
|---|
Probab=94.83 E-value=2.8 Score=37.53 Aligned_cols=95 Identities=9% Similarity=0.078 Sum_probs=58.4
Q ss_pred EEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhc-CCCcEEEEeccCC
Q 020423 127 IVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAAN-TNVPVSVKCRIGV 205 (326)
Q Consensus 127 iivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~-~~~pv~vK~r~g~ 205 (326)
+++.+.+.+.++....++.+ +.|+|.||+-...-. .. ...+.+.++++.++.. .+.|+.+-+|..+
T Consensus 2 i~v~~~~~~~~~~~~~~~~~-~~~aD~vElRlD~l~----------~~--~~~~~~~~~~~~~~~~~~~~piI~T~R~~~ 68 (228)
T TIGR01093 2 IFVPLTAPDLEEALATAEKI-CKGADIVELRVDLLK----------DP--SSNNDVDALIEQLSQLRPDKPLIFTIRTIS 68 (228)
T ss_pred EEEEccCCCHHHHHHHHHHh-ccCCCEEEEEechhc----------cc--CcHHHHHHHHHHHHHhcCCCcEEEEECChh
Confidence 67888888988888877777 779999999654211 00 1233344455554432 3689999888754
Q ss_pred CCC---ccHHHHHHHHHHHhhhCCccEEEEec
Q 020423 206 DDH---DSYNQLCDFIYKVSSLSPTRHFIIHS 234 (326)
Q Consensus 206 ~~~---~~~~e~~~~ia~~le~~Gvd~I~v~~ 234 (326)
+.. .+.++-.+.+.......++|+|+|.-
T Consensus 69 eGG~~~~~~~~~~~ll~~~~~~~~~d~vDiEl 100 (228)
T TIGR01093 69 EGGKFPGNEEEYLEELKRAADSPGPDFVDIEL 100 (228)
T ss_pred hCCCCCCCHHHHHHHHHHHHHhCCCCEEEEEc
Confidence 321 12223333344443567899999964
|
Type II 3-dehydroquinate dehydratase, designated AroQ, is described by TIGR01088. |
| >PRK07259 dihydroorotate dehydrogenase 1B; Reviewed | Back alignment and domain information |
|---|
Probab=94.82 E-value=1.1 Score=41.75 Aligned_cols=141 Identities=13% Similarity=0.174 Sum_probs=72.7
Q ss_pred HHHHHHHHCCCCEEEecCCCC-------CCcccCCCCccccccCC-------H-HHHHHHHHHHHhcCCCcEEEEeccCC
Q 020423 141 KATELANAYNYDEINLNCGCP-------SPKVAGHGCFGVSLMLD-------P-KFVGEAMSVIAANTNVPVSVKCRIGV 205 (326)
Q Consensus 141 ~aA~~a~~aG~d~Iein~g~P-------~~~~~r~d~yGgsl~~r-------~-~~l~eiv~avr~~~~~pv~vK~r~g~ 205 (326)
+.++.+.+.||.+|++..-.+ .+...+. ...+.|. . .++.++.+. ++..+.|+.+-+...
T Consensus 27 ~~~~~~~~~g~g~v~~kti~~~~~~g~~~pr~~~~---~~~~~n~~g~~~~g~~~~~~~~~~~-~~~~~~p~i~si~g~- 101 (301)
T PRK07259 27 EYARFYDLNGLGAIVTKSTTLEPREGNPTPRIAET---PGGMLNAIGLQNPGVDAFIEEELPW-LEEFDTPIIANVAGS- 101 (301)
T ss_pred HHHHHhhhcCCcEEEeCCCCCCCCCCCCCCcEEec---CCceeecCCCCCcCHHHHHHHHHHH-HhccCCcEEEEeccC-
Confidence 445556788999999964322 2111111 1223332 1 334444443 234478888877542
Q ss_pred CCCccHHHHHHHHHHHhhhCC-ccEEEEecCCcc--cCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeC--CCCCHH
Q 020423 206 DDHDSYNQLCDFIYKVSSLSP-TRHFIIHSRKAL--LNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNG--GINTVD 280 (326)
Q Consensus 206 ~~~~~~~e~~~~ia~~le~~G-vd~I~v~~~~~~--~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~G--gI~s~~ 280 (326)
+.++..+ .++.++++| +|+|.+...-+. .+|... ...+....+.+..+++. .++||++=- .+.+..
T Consensus 102 ----~~~~~~~-~a~~~~~aG~~D~iElN~~cP~~~~gg~~~---~~~~~~~~eiv~~vr~~-~~~pv~vKl~~~~~~~~ 172 (301)
T PRK07259 102 ----TEEEYAE-VAEKLSKAPNVDAIELNISCPNVKHGGMAF---GTDPELAYEVVKAVKEV-VKVPVIVKLTPNVTDIV 172 (301)
T ss_pred ----CHHHHHH-HHHHHhccCCcCEEEEECCCCCCCCCcccc---ccCHHHHHHHHHHHHHh-cCCCEEEEcCCCchhHH
Confidence 2445555 455667898 999998543211 111110 01111224455555554 489988733 343433
Q ss_pred HHHHHH-HhCCChhhh
Q 020423 281 EVNAAL-RKGAHHVMV 295 (326)
Q Consensus 281 da~~~l-~~GaD~V~i 295 (326)
.+.+.+ +.|+|++.+
T Consensus 173 ~~a~~l~~~G~d~i~~ 188 (301)
T PRK07259 173 EIAKAAEEAGADGLSL 188 (301)
T ss_pred HHHHHHHHcCCCEEEE
Confidence 444434 489998754
|
|
| >PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=94.81 E-value=0.62 Score=43.36 Aligned_cols=150 Identities=13% Similarity=0.174 Sum_probs=92.7
Q ss_pred CCcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEec-
Q 020423 124 QHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCR- 202 (326)
Q Consensus 124 ~~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r- 202 (326)
..|++++|-|..- | +...++.++||+-|-+-.+. . .++.+.+...++++..+. .++.|-.-+-
T Consensus 74 ~VPValHLDH~~~--~-e~i~~ai~~GftSVM~DgS~-l-----------p~eeNi~~T~~vv~~Ah~-~gvsVEaElG~ 137 (284)
T PRK12857 74 SVPVALHLDHGTD--F-EQVMKCIRNGFTSVMIDGSK-L-----------PLEENIALTKKVVEIAHA-VGVSVEAELGK 137 (284)
T ss_pred CCCEEEECCCCCC--H-HHHHHHHHcCCCeEEEeCCC-C-----------CHHHHHHHHHHHHHHHHH-cCCEEEEEeee
Confidence 4577777754321 1 13445566788877775432 1 234678888888887653 3444443322
Q ss_pred c-CCCC----------CccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEE
Q 020423 203 I-GVDD----------HDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFT 271 (326)
Q Consensus 203 ~-g~~~----------~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVI 271 (326)
+ |.++ ..++++..+ ..++.|+|.+-|+-++.. +.+. ..|.++++.++++.+.. ++|++
T Consensus 138 vgg~e~~~~~~~~~~~~T~pe~a~~----Fv~~TgvD~LAvaiGt~H-G~y~-----~~p~Ld~~~L~~i~~~~-~vPLV 206 (284)
T PRK12857 138 IGGTEDDITVDEREAAMTDPEEARR----FVEETGVDALAIAIGTAH-GPYK-----GEPKLDFDRLAKIKELV-NIPIV 206 (284)
T ss_pred cCCccCCCCcccchhhcCCHHHHHH----HHHHHCCCEEeeccCccc-cccC-----CCCcCCHHHHHHHHHHh-CCCEE
Confidence 1 1111 113444433 445689999999866641 1111 12456799999987765 99999
Q ss_pred EeCCCCCHH-HHHHHHHhCCChhhhhHHHH
Q 020423 272 LNGGINTVD-EVNAALRKGAHHVMVGRAAY 300 (326)
Q Consensus 272 a~GgI~s~~-da~~~l~~GaD~V~iGRall 300 (326)
.=||=..++ ++.++++.|+.=|=+++.+.
T Consensus 207 lHGgSG~~~e~~~~ai~~Gi~KiNi~T~~~ 236 (284)
T PRK12857 207 LHGSSGVPDEAIRKAISLGVRKVNIDTNIR 236 (284)
T ss_pred EeCCCCCCHHHHHHHHHcCCeEEEeCcHHH
Confidence 999877664 57778889988888888764
|
|
| >PRK13957 indole-3-glycerol-phosphate synthase; Provisional | Back alignment and domain information |
|---|
Probab=94.77 E-value=0.11 Score=47.35 Aligned_cols=72 Identities=10% Similarity=-0.001 Sum_probs=56.9
Q ss_pred HHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhH
Q 020423 218 IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGR 297 (326)
Q Consensus 218 ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGR 297 (326)
+++.++++|++.|.|-.-..+.+ .+++.+..+++. +++||+.-+.|-++.++.++...|||+|.+=-
T Consensus 66 ~A~~y~~~GA~aISVlTe~~~F~------------Gs~~~l~~v~~~-v~~PvL~KDFIid~~QI~ea~~~GADavLLI~ 132 (247)
T PRK13957 66 IAKTYETLGASAISVLTDQSYFG------------GSLEDLKSVSSE-LKIPVLRKDFILDEIQIREARAFGASAILLIV 132 (247)
T ss_pred HHHHHHHCCCcEEEEEcCCCcCC------------CCHHHHHHHHHh-cCCCEEeccccCCHHHHHHHHHcCCCEEEeEH
Confidence 45667889999999876443322 237778777665 49999999999999999999999999998777
Q ss_pred HHHhC
Q 020423 298 AAYQN 302 (326)
Q Consensus 298 all~d 302 (326)
++|.+
T Consensus 133 ~~L~~ 137 (247)
T PRK13957 133 RILTP 137 (247)
T ss_pred hhCCH
Confidence 66643
|
|
| >cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure | Back alignment and domain information |
|---|
Probab=94.75 E-value=0.59 Score=39.65 Aligned_cols=135 Identities=19% Similarity=0.203 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHH
Q 020423 137 DNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 216 (326)
Q Consensus 137 ~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~ 216 (326)
+.+.+.++.+.+.|++.|++-.-.+...... . ..+ +.+..+++..+.|+.+.+...... + ...
T Consensus 12 ~~~~~~~~~~~~~G~~~v~~~~~~~~~~~~~--~------~~~----~~~~~~~~~~~~~~~~~~~~~~~~--~---~~~ 74 (200)
T cd04722 12 GDPVELAKAAAEAGADAIIVGTRSSDPEEAE--T------DDK----EVLKEVAAETDLPLGVQLAINDAA--A---AVD 74 (200)
T ss_pred HHHHHHHHHHHcCCCCEEEEeeEEECcccCC--C------ccc----cHHHHHHhhcCCcEEEEEccCCch--h---hhh
Confidence 5677788888898999998864322211010 0 111 445555556688888876653211 1 111
Q ss_pred HHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhh
Q 020423 217 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVG 296 (326)
Q Consensus 217 ~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iG 296 (326)
..++.+.++|+|+|++|...... +....+.+.++++.++++||+..-..........+.+.|+|.+.+.
T Consensus 75 ~~a~~~~~~g~d~v~l~~~~~~~-----------~~~~~~~~~~i~~~~~~~~v~~~~~~~~~~~~~~~~~~g~d~i~~~ 143 (200)
T cd04722 75 IAAAAARAAGADGVEIHGAVGYL-----------AREDLELIRELREAVPDVKVVVKLSPTGELAAAAAEEAGVDEVGLG 143 (200)
T ss_pred HHHHHHHHcCCCEEEEeccCCcH-----------HHHHHHHHHHHHHhcCCceEEEEECCCCccchhhHHHcCCCEEEEc
Confidence 12345567999999999754210 0112445666665544778776654333222222456899999886
Q ss_pred HHH
Q 020423 297 RAA 299 (326)
Q Consensus 297 Ral 299 (326)
...
T Consensus 144 ~~~ 146 (200)
T cd04722 144 NGG 146 (200)
T ss_pred CCc
Confidence 543
|
Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN. |
| >PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4 | Back alignment and domain information |
|---|
Probab=94.74 E-value=0.074 Score=46.72 Aligned_cols=62 Identities=27% Similarity=0.336 Sum_probs=44.4
Q ss_pred HHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhh
Q 020423 218 IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMV 295 (326)
Q Consensus 218 ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~i 295 (326)
+++.+-+.|+..+.|+-++. ...+.+++++++++++ ++++|-|.|.++++++++.||++++.
T Consensus 25 ~~~al~~gGi~~iEiT~~t~---------------~a~~~I~~l~~~~p~~-~vGAGTV~~~e~a~~a~~aGA~FivS 86 (196)
T PF01081_consen 25 IAEALIEGGIRAIEITLRTP---------------NALEAIEALRKEFPDL-LVGAGTVLTAEQAEAAIAAGAQFIVS 86 (196)
T ss_dssp HHHHHHHTT--EEEEETTST---------------THHHHHHHHHHHHTTS-EEEEES--SHHHHHHHHHHT-SEEEE
T ss_pred HHHHHHHCCCCEEEEecCCc---------------cHHHHHHHHHHHCCCC-eeEEEeccCHHHHHHHHHcCCCEEEC
Confidence 34455679999999986542 2367777787777775 79999999999999999999998763
|
1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A .... |
| >TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase | Back alignment and domain information |
|---|
Probab=94.62 E-value=0.69 Score=42.47 Aligned_cols=156 Identities=10% Similarity=0.082 Sum_probs=81.5
Q ss_pred CCCChHHHHHHHHHcCCCcEEEecceeecc-cccccc---chhhhhh-----cCCCCCcEEE-Ee--cCC-CHHHHHHHH
Q 020423 77 MDWTDNHYRTLARLISKHAWLYTEMLAAET-IIYQQG---NLDRFLA-----FSPEQHPIVL-QI--GGS-NLDNLAKAT 143 (326)
Q Consensus 77 ~~~s~~~~r~~~~~~Gg~gli~te~~~~~~-~~~~~~---~~~~~~~-----~~~~~~piiv-QL--~g~-~~~~f~~aA 143 (326)
.+.=|...+.++.+.| +.+|.++-..... +.+.+. ..+.++. ......++++ .+ .+. ++++..+.|
T Consensus 20 ~tayD~~sA~i~~~aG-~d~ilvGdSlgm~~lG~~~t~~vtldem~~h~~aV~rg~~~~~vv~DmPf~sy~~~e~a~~na 98 (263)
T TIGR00222 20 ITAYDYSFAKLFADAG-VDVILVGDSLGMVVLGHDSTLPVTVADMIYHTAAVKRGAPNCLIVTDLPFMSYATPEQALKNA 98 (263)
T ss_pred EeccCHHHHHHHHHcC-CCEEEECccHhHHhcCCCCCCCcCHHHHHHHHHHHHhhCCCceEEeCCCcCCCCCHHHHHHHH
Confidence 4555666676666665 8888777322211 112111 1122211 1223344443 33 122 466655555
Q ss_pred HH-HHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEE---------EEeccCCC----CCc
Q 020423 144 EL-ANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVS---------VKCRIGVD----DHD 209 (326)
Q Consensus 144 ~~-a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~---------vK~r~g~~----~~~ 209 (326)
.+ .+++|+++|.|-.+ ....+.++.+.+ .++||. ++.-.|+. +.+
T Consensus 99 ~rl~~eaGa~aVkiEgg--------------------~~~~~~i~~l~~-~gIpV~gHiGltPq~a~~~ggy~~qgrt~~ 157 (263)
T TIGR00222 99 ARVMQETGANAVKLEGG--------------------EWLVETVQMLTE-RGVPVVGHLGLTPQSVNILGGYKVQGKDEE 157 (263)
T ss_pred HHHHHHhCCeEEEEcCc--------------------HhHHHHHHHHHH-CCCCEEEecCCCceeEeecCCeeecCCCHH
Confidence 54 55699999999532 122344455433 477777 33212121 112
Q ss_pred cHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeC
Q 020423 210 SYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNG 274 (326)
Q Consensus 210 ~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~G 274 (326)
..+++++. ++.++++|++.|.+.+-. .+..+++.++ +++|+|+-|
T Consensus 158 ~a~~~i~~-A~a~e~AGA~~ivlE~vp------------------~~~a~~It~~-l~iP~iGIG 202 (263)
T TIGR00222 158 AAKKLLED-ALALEEAGAQLLVLECVP------------------VELAAKITEA-LAIPVIGIG 202 (263)
T ss_pred HHHHHHHH-HHHHHHcCCCEEEEcCCc------------------HHHHHHHHHh-CCCCEEeec
Confidence 24455553 556789999999876421 3455566665 489998764
|
Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase. |
| >PLN02274 inosine-5'-monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=94.58 E-value=0.066 Score=53.87 Aligned_cols=63 Identities=17% Similarity=0.309 Sum_probs=47.3
Q ss_pred HhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhh
Q 020423 221 VSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVG 296 (326)
Q Consensus 221 ~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iG 296 (326)
.+.++|+|.|.+.... |.+ ...|+.++++++.+++++ +..|+|.|.+++..+++.|||+|.+|
T Consensus 255 ~l~~ag~d~i~iD~~~----g~~--------~~~~~~i~~ik~~~p~~~-vi~g~v~t~e~a~~a~~aGaD~i~vg 317 (505)
T PLN02274 255 HLVKAGVDVVVLDSSQ----GDS--------IYQLEMIKYIKKTYPELD-VIGGNVVTMYQAQNLIQAGVDGLRVG 317 (505)
T ss_pred HHHHcCCCEEEEeCCC----CCc--------HHHHHHHHHHHHhCCCCc-EEEecCCCHHHHHHHHHcCcCEEEEC
Confidence 3446999999997632 211 123788888888776665 44688999999999999999999654
|
|
| >cd03317 NAAAR N-acylamino acid racemase (NAAAR), an octameric enzyme that catalyzes the racemization of N-acylamino acids | Back alignment and domain information |
|---|
Probab=94.48 E-value=1 Score=43.11 Aligned_cols=72 Identities=13% Similarity=0.105 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHH
Q 020423 136 LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLC 215 (326)
Q Consensus 136 ~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~ 215 (326)
++++.+.++.+.+.||..+-+..+ | +.-.+.++++|+.++ .+++++.....-+.++.
T Consensus 138 ~~~~~~~~~~~~~~Gf~~~KiKv~-~------------------~~d~~~l~~vr~~~g---~~~l~lDaN~~~~~~~a- 194 (354)
T cd03317 138 VEQLLKQIERYLEEGYKRIKLKIK-P------------------GWDVEPLKAVRERFP---DIPLMADANSAYTLADI- 194 (354)
T ss_pred HHHHHHHHHHHHHcCCcEEEEecC-h------------------HHHHHHHHHHHHHCC---CCeEEEECCCCCCHHHH-
Confidence 378888888888899999999752 1 112456777887764 34555543332334443
Q ss_pred HHHHHHhhhCCccEEE
Q 020423 216 DFIYKVSSLSPTRHFI 231 (326)
Q Consensus 216 ~~ia~~le~~Gvd~I~ 231 (326)
.. .+.+++.++.+|.
T Consensus 195 ~~-~~~l~~~~i~~iE 209 (354)
T cd03317 195 PL-LKRLDEYGLLMIE 209 (354)
T ss_pred HH-HHHhhcCCccEEE
Confidence 33 4556777887775
|
NAAARs act on a broad range of N-acylamino acids rather than amino acids. Enantiopure amino acids are of industrial interest as chiral building blocks for antibiotics, herbicides, and drugs. NAAAR is a member of the enolase superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. |
| >PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=94.43 E-value=0.086 Score=52.85 Aligned_cols=63 Identities=17% Similarity=0.279 Sum_probs=46.9
Q ss_pred HhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhh
Q 020423 221 VSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVG 296 (326)
Q Consensus 221 ~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iG 296 (326)
.+.++|+|.|.+..... .. ..-.+.+..++++.+++||++ |++.|.+++..+++.|||+|-+|
T Consensus 235 ~L~~agvdvivvD~a~g----~~--------~~vl~~i~~i~~~~p~~~vi~-g~v~t~e~a~~l~~aGad~i~vg 297 (486)
T PRK05567 235 ALVEAGVDVLVVDTAHG----HS--------EGVLDRVREIKAKYPDVQIIA-GNVATAEAARALIEAGADAVKVG 297 (486)
T ss_pred HHHHhCCCEEEEECCCC----cc--------hhHHHHHHHHHhhCCCCCEEE-eccCCHHHHHHHHHcCCCEEEEC
Confidence 34469999988754321 10 112566777777777899888 99999999999999999999764
|
|
| >cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins | Back alignment and domain information |
|---|
Probab=94.42 E-value=1.8 Score=41.00 Aligned_cols=108 Identities=10% Similarity=-0.003 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCc-ccCCCCcCCcCCCCCccHHHH
Q 020423 180 KFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKA-LLNGISPAENRTIPPLKYEYY 258 (326)
Q Consensus 180 ~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~-~~~g~~~~~~~~~~~~~~~~i 258 (326)
+...+.+...++..+.|+.+.+.. .+.++..+ +++.++++|+|+|.++-... ...+..+. ..+....+.+
T Consensus 85 ~~~~~~i~~~~~~~~~pvi~si~g-----~~~~~~~~-~a~~~~~~gad~iElN~s~~~~~~~~~g~---~~~~~~~eiv 155 (325)
T cd04739 85 EEYLELIRRAKRAVSIPVIASLNG-----VSAGGWVD-YARQIEEAGADALELNIYALPTDPDISGA---EVEQRYLDIL 155 (325)
T ss_pred HHHHHHHHHHHhccCCeEEEEeCC-----CCHHHHHH-HHHHHHhcCCCEEEEeCCCCCCCCCcccc---hHHHHHHHHH
Confidence 333444444444557899887633 12344444 45566788999999975421 00111110 0001113455
Q ss_pred HHHHhcCCCceEEEe--CCCCCHHHHHHH-HHhCCChhhhhH
Q 020423 259 YALLRDFPDLTFTLN--GGINTVDEVNAA-LRKGAHHVMVGR 297 (326)
Q Consensus 259 ~~i~~~~~~iPVIa~--GgI~s~~da~~~-l~~GaD~V~iGR 297 (326)
..+++. .++||++= ..+.+..++.+. .+.|+|+|.+.-
T Consensus 156 ~~v~~~-~~iPv~vKl~p~~~~~~~~a~~l~~~Gadgi~~~n 196 (325)
T cd04739 156 RAVKSA-VTIPVAVKLSPFFSALAHMAKQLDAAGADGLVLFN 196 (325)
T ss_pred HHHHhc-cCCCEEEEcCCCccCHHHHHHHHHHcCCCeEEEEc
Confidence 555544 48999874 445555555444 458999987743
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive. |
| >TIGR01928 menC_lowGC/arch o-succinylbenzoic acid (OSB) synthetase | Back alignment and domain information |
|---|
Probab=94.38 E-value=0.85 Score=43.18 Aligned_cols=123 Identities=13% Similarity=0.114 Sum_probs=71.4
Q ss_pred ecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCcc
Q 020423 131 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDS 210 (326)
Q Consensus 131 L~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~ 210 (326)
+...+++++.+.++...+.||..+-+..+ | + .+ .+.++++|+..+ .++++......-+
T Consensus 128 ~~~~~~~~~~~~a~~~~~~Gf~~~KiKv~-~-------~-------~d----~~~v~~vr~~~~---~~~l~vDaN~~~~ 185 (324)
T TIGR01928 128 SGLANDEQMLKQIESLKATGYKRIKLKIT-P-------Q-------IM----HQLVKLRRLRFP---QIPLVIDANESYD 185 (324)
T ss_pred cCCCCHHHHHHHHHHHHHcCCcEEEEEeC-C-------c-------hh----HHHHHHHHHhCC---CCcEEEECCCCCC
Confidence 44457788888888888899999999752 1 0 11 356777777662 2344443322223
Q ss_pred HHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhC-
Q 020423 211 YNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKG- 289 (326)
Q Consensus 211 ~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~G- 289 (326)
.++. .. .+.+++.++.++. . .+++-+++.++++++.. ++||.+.=.+.+..++.++++.|
T Consensus 186 ~~~a-~~-~~~l~~~~~~~iE----e------------P~~~~~~~~~~~l~~~~-~~pia~dEs~~~~~~~~~~~~~~~ 246 (324)
T TIGR01928 186 LQDF-PR-LKELDRYQLLYIE----E------------PFKIDDLSMLDELAKGT-ITPICLDESITSLDDARNLIELGN 246 (324)
T ss_pred HHHH-HH-HHHHhhCCCcEEE----C------------CCChhHHHHHHHHHhhc-CCCEeeCCCcCCHHHHHHHHHcCC
Confidence 3332 32 4566778887774 1 11222345555555443 66766655666777777766643
Q ss_pred CChhh
Q 020423 290 AHHVM 294 (326)
Q Consensus 290 aD~V~ 294 (326)
+|.++
T Consensus 247 ~dvi~ 251 (324)
T TIGR01928 247 VKVIN 251 (324)
T ss_pred CCEEE
Confidence 55554
|
This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are low GC gram positive bacteria and archaea. Also included in the seed and in the model are enzymes with the com-name of N-acylamino acid racemase (or the more general term, racemase / racemase family), which refers to the enzyme's industrial application as racemases, and not to its biological function as o-succinylbenzoic acid synthetase. |
| >COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.38 E-value=3.5 Score=36.59 Aligned_cols=126 Identities=18% Similarity=0.293 Sum_probs=77.3
Q ss_pred HHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHH
Q 020423 140 AKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIY 219 (326)
Q Consensus 140 ~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia 219 (326)
.+..+.+.+.++|.|+||.. ..+++ ++.+++..++|++-=++...... . + .
T Consensus 65 ~~i~~i~~~~~ld~VQlHG~-----------------e~~~~----~~~l~~~~~~~v~kai~v~~~~~--~-~-----~ 115 (208)
T COG0135 65 EEILEIAEELGLDAVQLHGD-----------------EDPEY----IDQLKEELGVPVIKAISVSEEGD--L-E-----L 115 (208)
T ss_pred HHHHHHHHhcCCCEEEECCC-----------------CCHHH----HHHHHhhcCCceEEEEEeCCccc--h-h-----h
Confidence 34455667788999999952 12344 34444444677765555542211 1 1 1
Q ss_pred HHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCC-ChhhhhHH
Q 020423 220 KVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGA-HHVMVGRA 298 (326)
Q Consensus 220 ~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~Ga-D~V~iGRa 298 (326)
......-+|.+.+........|-++ .+.+|+.+... ....|++.+||+ +++.+.++++.+. .+|=+.++
T Consensus 116 ~~~~~~~~d~~LlDa~~~~~~GGtG------~~fDW~~l~~~---~~~~~~~LAGGL-~p~NV~~ai~~~~p~gvDvSSG 185 (208)
T COG0135 116 AAREEGPVDAILLDAKVPGLPGGTG------QTFDWNLLPKL---RLSKPVMLAGGL-NPDNVAEAIALGPPYGVDVSSG 185 (208)
T ss_pred hhhccCCccEEEEcCCCCCCCCCCC------cEECHHHhccc---cccCCEEEECCC-CHHHHHHHHHhcCCceEEeccc
Confidence 1123466888888764332122122 23458776554 136789999999 8999999999776 88877777
Q ss_pred HHhCCc
Q 020423 299 AYQNPW 304 (326)
Q Consensus 299 ll~dP~ 304 (326)
.=.+|-
T Consensus 186 VE~~pG 191 (208)
T COG0135 186 VESSPG 191 (208)
T ss_pred cccCCC
Confidence 655543
|
|
| >cd03323 D-glucarate_dehydratase D-Glucarate dehydratase (GlucD) catalyzes the dehydration of both D-glucarate and L-idarate to form 5-keto-4-deoxy-D-glucarate (5-KDG) , the initial reaction of the catabolic pathway for (D)-glucarate | Back alignment and domain information |
|---|
Probab=94.38 E-value=0.77 Score=44.77 Aligned_cols=76 Identities=14% Similarity=0.097 Sum_probs=46.0
Q ss_pred CHHHHHHHHHHHHH-CCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHH
Q 020423 135 NLDNLAKATELANA-YNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQ 213 (326)
Q Consensus 135 ~~~~f~~aA~~a~~-aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e 213 (326)
+++++.+.++.+.+ .||..+-++.|- .+++.-.+.++++|+.++ . ++++......-+.++
T Consensus 168 ~~e~~~~~a~~~~~~~Gf~~~KiKvG~----------------~~~~~di~~v~avRea~~-~--~~l~vDaN~~w~~~~ 228 (395)
T cd03323 168 TPEGVVRLARAAIDRYGFKSFKLKGGV----------------LPGEEEIEAVKALAEAFP-G--ARLRLDPNGAWSLET 228 (395)
T ss_pred CHHHHHHHHHHHHHhcCCcEEEEecCC----------------CCHHHHHHHHHHHHHhCC-C--CcEEEeCCCCcCHHH
Confidence 67888888877764 699999997532 124444678888888773 2 333332222223455
Q ss_pred HHHHHHHHhhhCCccEEE
Q 020423 214 LCDFIYKVSSLSPTRHFI 231 (326)
Q Consensus 214 ~~~~ia~~le~~Gvd~I~ 231 (326)
..++ .+.+++ ++.++.
T Consensus 229 A~~~-~~~l~~-~l~~iE 244 (395)
T cd03323 229 AIRL-AKELEG-VLAYLE 244 (395)
T ss_pred HHHH-HHhcCc-CCCEEE
Confidence 5553 445666 777664
|
GlucD belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion. |
| >PRK05437 isopentenyl pyrophosphate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=94.36 E-value=0.57 Score=45.01 Aligned_cols=108 Identities=10% Similarity=0.094 Sum_probs=66.9
Q ss_pred CCHHHHHHHHHHHHhcC-CCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccH
Q 020423 177 LDPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKY 255 (326)
Q Consensus 177 ~r~~~l~eiv~avr~~~-~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~ 255 (326)
.+++ +.+-.+.+|+.. +.|+.+-+-.......+.++. .+..+..++|++.+|-.... .-..+ + ...++
T Consensus 103 ~~~~-~~~~~~~vr~~~p~~p~~aNl~~~~~~~~~~~~~----~~~~~~~~adal~l~l~~~q-e~~~p-~----g~~~f 171 (352)
T PRK05437 103 KDPE-LADSFSVVRKVAPDGLLFANLGAVQLYGYGVEEA----QRAVEMIEADALQIHLNPLQ-ELVQP-E----GDRDF 171 (352)
T ss_pred cChh-hHHHHHHHHHHCCCceEEeecCccccCCCCHHHH----HHHHHhcCCCcEEEeCccch-hhcCC-C----CcccH
Confidence 4677 777888888876 788888655432222223333 33445567889888853210 00000 0 01123
Q ss_pred ----HHHHHHHhcCCCceEEE--eCCCCCHHHHHHHHHhCCChhhhh
Q 020423 256 ----EYYYALLRDFPDLTFTL--NGGINTVDEVNAALRKGAHHVMVG 296 (326)
Q Consensus 256 ----~~i~~i~~~~~~iPVIa--~GgI~s~~da~~~l~~GaD~V~iG 296 (326)
+.+.++++.. ++||+. +|.-.+.+++..+.+.|+|+|.++
T Consensus 172 ~~~le~i~~i~~~~-~vPVivK~~g~g~s~~~a~~l~~~Gvd~I~Vs 217 (352)
T PRK05437 172 RGWLDNIAEIVSAL-PVPVIVKEVGFGISKETAKRLADAGVKAIDVA 217 (352)
T ss_pred HHHHHHHHHHHHhh-CCCEEEEeCCCCCcHHHHHHHHHcCCCEEEEC
Confidence 4566666654 899997 566678999999999999999883
|
|
| >TIGR02534 mucon_cyclo muconate and chloromuconate cycloisomerases | Back alignment and domain information |
|---|
Probab=94.35 E-value=0.87 Score=43.84 Aligned_cols=82 Identities=15% Similarity=0.108 Sum_probs=45.2
Q ss_pred ecCCCHHH-HHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCc
Q 020423 131 IGGSNLDN-LAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHD 209 (326)
Q Consensus 131 L~g~~~~~-f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~ 209 (326)
+...++++ +.++.+..++.||..+-+..|. .+++.-.+.++++|+.++..+ ++++.....-
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~Gf~~~KiKvg~----------------~~~~~d~~~v~~~re~~g~~~--~l~~DaN~~~ 198 (368)
T TIGR02534 137 LASGDTDRDIAEAEERIEEKRHRSFKLKIGA----------------RDPADDVAHVVAIAKALGDRA--SVRVDVNAAW 198 (368)
T ss_pred EeCCCHHHHHHHHHHHHHhcCcceEEEEeCC----------------CCcHHHHHHHHHHHHhcCCCc--EEEEECCCCC
Confidence 33344443 4344444446799999986531 123444567888888775443 3344333333
Q ss_pred cHHHHHHHHHHHhhhCCccEEE
Q 020423 210 SYNQLCDFIYKVSSLSPTRHFI 231 (326)
Q Consensus 210 ~~~e~~~~ia~~le~~Gvd~I~ 231 (326)
+.++..++ .+.+++.++.+|.
T Consensus 199 ~~~~A~~~-~~~l~~~~~~~iE 219 (368)
T TIGR02534 199 DERTALHY-LPQLADAGVELIE 219 (368)
T ss_pred CHHHHHHH-HHHHHhcChhheE
Confidence 45555553 4456777777664
|
This model encompasses muconate cycloisomerase (EC 5.5.1.1) and chloromuconate cycloisomerase (EC 5.5.1.7), enzymes that often overlap in specificity. It excludes more distantly related proteins such as mandelate racemase (5.1.2.2). |
| >PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=94.31 E-value=0.51 Score=42.05 Aligned_cols=68 Identities=12% Similarity=0.083 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCc--eEEEeCCCCCHHHHHHHHHh
Q 020423 211 YNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDL--TFTLNGGINTVDEVNAALRK 288 (326)
Q Consensus 211 ~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~i--PVIa~GgI~s~~da~~~l~~ 288 (326)
.++..+ +++.+.+.|+..+.|+-++. ...+.++++++++.+- -++++|-|.|.++++++++.
T Consensus 24 ~~~a~~-~~~al~~~Gi~~iEit~~~~---------------~a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a~~a 87 (213)
T PRK06552 24 KEEALK-ISLAVIKGGIKAIEVTYTNP---------------FASEVIKELVELYKDDPEVLIGAGTVLDAVTARLAILA 87 (213)
T ss_pred HHHHHH-HHHHHHHCCCCEEEEECCCc---------------cHHHHHHHHHHHcCCCCCeEEeeeeCCCHHHHHHHHHc
Confidence 334444 45566679999999986542 2367788887776432 37999999999999999999
Q ss_pred CCChhh
Q 020423 289 GAHHVM 294 (326)
Q Consensus 289 GaD~V~ 294 (326)
||++++
T Consensus 88 GA~Fiv 93 (213)
T PRK06552 88 GAQFIV 93 (213)
T ss_pred CCCEEE
Confidence 999987
|
|
| >TIGR01334 modD putative molybdenum utilization protein ModD | Back alignment and domain information |
|---|
Probab=94.25 E-value=0.33 Score=45.02 Aligned_cols=94 Identities=15% Similarity=0.160 Sum_probs=60.7
Q ss_pred HHHHHHHHHhcC-CCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCcc-HHHHH
Q 020423 182 VGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLK-YEYYY 259 (326)
Q Consensus 182 l~eiv~avr~~~-~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~-~~~i~ 259 (326)
+.+.++.+|+.. ...+.|-+ .+.++..+ .+ ++|+|.|-++.-+. .. -+.+.
T Consensus 175 i~~av~~~r~~~~~~kIeVEv-------~tleea~e----a~-~~GaDiI~lDn~~~---------------e~l~~~v~ 227 (277)
T TIGR01334 175 WGGAIGRLKQTAPERKITVEA-------DTIEQALT----VL-QASPDILQLDKFTP---------------QQLHHLHE 227 (277)
T ss_pred HHHHHHHHHHhCCCCCEEEEC-------CCHHHHHH----HH-HcCcCEEEECCCCH---------------HHHHHHHH
Confidence 556777777654 33444432 24444433 33 58999999884321 11 12233
Q ss_pred HHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhCC
Q 020423 260 ALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNP 303 (326)
Q Consensus 260 ~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~dP 303 (326)
.+....+++.|.++||| +++.+.++.+.|+|.+.+|-...+.|
T Consensus 228 ~l~~~~~~~~leasGGI-~~~ni~~ya~~GvD~is~gal~~a~~ 270 (277)
T TIGR01334 228 RLKFFDHIPTLAAAGGI-NPENIADYIEAGIDLFITSAPYYAAP 270 (277)
T ss_pred HHhccCCCEEEEEECCC-CHHHHHHHHhcCCCEEEeCcceecCc
Confidence 33223457889999999 89999999999999999997644444
|
The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown. |
| >PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=94.24 E-value=0.43 Score=44.26 Aligned_cols=92 Identities=17% Similarity=0.151 Sum_probs=56.7
Q ss_pred HHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHH
Q 020423 183 GEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALL 262 (326)
Q Consensus 183 ~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~ 262 (326)
.+.++.+|+..+ ...|+.. +.++.+|..+ .+ ++|+|.|-+..-+ .+.+++..
T Consensus 181 ~~ai~~~r~~~~--~~~kIeV---Ev~tleea~e----a~-~~gaDiI~LDn~s------------------~e~l~~av 232 (281)
T PRK06106 181 REAIRRARAGVG--HLVKIEV---EVDTLDQLEE----AL-ELGVDAVLLDNMT------------------PDTLREAV 232 (281)
T ss_pred HHHHHHHHHhCC--CCCcEEE---EeCCHHHHHH----HH-HcCCCEEEeCCCC------------------HHHHHHHH
Confidence 455556666543 1222222 1234555443 22 5899999876422 22233333
Q ss_pred hcC-CCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhCC
Q 020423 263 RDF-PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNP 303 (326)
Q Consensus 263 ~~~-~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~dP 303 (326)
+.. ...|+-++||| +.+.+.++.++|+|.+.+|.....-|
T Consensus 233 ~~~~~~~~leaSGGI-~~~ni~~yA~tGVD~Is~Galthsa~ 273 (281)
T PRK06106 233 AIVAGRAITEASGRI-TPETAPAIAASGVDLISVGWLTHSAP 273 (281)
T ss_pred HHhCCCceEEEECCC-CHHHHHHHHhcCCCEEEeChhhcCCC
Confidence 221 25789999999 89999999999999999998655333
|
|
| >TIGR03849 arch_ComA phosphosulfolactate synthase | Back alignment and domain information |
|---|
Probab=94.21 E-value=1.4 Score=39.89 Aligned_cols=84 Identities=11% Similarity=0.111 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCC-----CccH
Q 020423 137 DNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDD-----HDSY 211 (326)
Q Consensus 137 ~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~-----~~~~ 211 (326)
..|.+..+.+++.|||.|||+-|.-. -..+...++++.+++. -+-||--.|..+ ..+.
T Consensus 71 ~~~~~Yl~~~k~lGf~~IEiS~G~~~--------------i~~~~~~rlI~~~~~~---g~~v~~EvG~K~~~~~~~~~~ 133 (237)
T TIGR03849 71 GKFDEYLNECDELGFEAVEISDGSME--------------ISLEERCNLIERAKDN---GFMVLSEVGKKSPEKDSELTP 133 (237)
T ss_pred hhHHHHHHHHHHcCCCEEEEcCCccC--------------CCHHHHHHHHHHHHhC---CCeEeccccccCCcccccCCH
Confidence 56777788999999999999865322 1123334455555432 222222222111 2345
Q ss_pred HHHHHHHHHHhhhCCccEEEEecCCcc
Q 020423 212 NQLCDFIYKVSSLSPTRHFIIHSRKAL 238 (326)
Q Consensus 212 ~e~~~~ia~~le~~Gvd~I~v~~~~~~ 238 (326)
.+.++.+.+.+ ++|+++|.+.+|+..
T Consensus 134 ~~~i~~~~~~L-eAGA~~ViiEarEsg 159 (237)
T TIGR03849 134 DDRIKLINKDL-EAGADYVIIEGRESG 159 (237)
T ss_pred HHHHHHHHHHH-HCCCcEEEEeehhcC
Confidence 66666665556 599999999998653
|
This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679. |
| >PRK15452 putative protease; Provisional | Back alignment and domain information |
|---|
Probab=94.18 E-value=1.6 Score=43.24 Aligned_cols=129 Identities=14% Similarity=0.111 Sum_probs=78.5
Q ss_pred HHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHHH
Q 020423 141 KATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYK 220 (326)
Q Consensus 141 ~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia~ 220 (326)
+.++.|.++|+|.|-+-....... .+...| ..+-+.+.++..++ -+..+.+.+..-..+ .+.+++.+.+.+
T Consensus 14 e~l~aAi~~GADaVY~G~~~~~~R-~~~~~f------~~edl~eav~~ah~-~g~kvyvt~n~i~~e-~el~~~~~~l~~ 84 (443)
T PRK15452 14 KNMRYAFAYGADAVYAGQPRYSLR-VRNNEF------NHENLALGINEAHA-LGKKFYVVVNIAPHN-AKLKTFIRDLEP 84 (443)
T ss_pred HHHHHHHHCCCCEEEECCCccchh-hhccCC------CHHHHHHHHHHHHH-cCCEEEEEecCcCCH-HHHHHHHHHHHH
Confidence 345567789999999954322211 111122 13445555555543 366666665443222 345555554444
Q ss_pred HhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeC--CCCCHHHHHHHHHhCCChhhhhHH
Q 020423 221 VSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNG--GINTVDEVNAALRKGAHHVMVGRA 298 (326)
Q Consensus 221 ~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~G--gI~s~~da~~~l~~GaD~V~iGRa 298 (326)
+.+.|+|.|.|+. +..+..+++..+++||.++- .|.+...+..+.+.|++.|.+.|-
T Consensus 85 -l~~~gvDgvIV~d--------------------~G~l~~~ke~~p~l~ih~stqlni~N~~a~~f~~~lG~~rvvLSrE 143 (443)
T PRK15452 85 -VIAMKPDALIMSD--------------------PGLIMMVREHFPEMPIHLSVQANAVNWATVKFWQQMGLTRVILSRE 143 (443)
T ss_pred -HHhCCCCEEEEcC--------------------HHHHHHHHHhCCCCeEEEEecccCCCHHHHHHHHHCCCcEEEECCc
Confidence 3469999999874 22233344445688888875 578888888888899999988886
Q ss_pred H
Q 020423 299 A 299 (326)
Q Consensus 299 l 299 (326)
+
T Consensus 144 L 144 (443)
T PRK15452 144 L 144 (443)
T ss_pred C
Confidence 5
|
|
| >cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate | Back alignment and domain information |
|---|
Probab=94.15 E-value=0.98 Score=40.11 Aligned_cols=120 Identities=13% Similarity=0.128 Sum_probs=74.3
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCC-----c
Q 020423 135 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDH-----D 209 (326)
Q Consensus 135 ~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~-----~ 209 (326)
+.....++++.+.++|...++++ .+ +.++.+++.+++|+..-.+.+.++. .
T Consensus 25 ~~~~i~~~a~~~~~~G~~~~~~~--------------------~~----~~~~~i~~~~~iPil~~~~~~~~~~~~~ig~ 80 (219)
T cd04729 25 SPEIMAAMALAAVQGGAVGIRAN--------------------GV----EDIRAIRARVDLPIIGLIKRDYPDSEVYITP 80 (219)
T ss_pred cHHHHHHHHHHHHHCCCeEEEcC--------------------CH----HHHHHHHHhCCCCEEEEEecCCCCCCceeCC
Confidence 56778899999999998887741 11 3456666667889865334333221 1
Q ss_pred cHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhC
Q 020423 210 SYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKG 289 (326)
Q Consensus 210 ~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~G 289 (326)
+.++ + +.+.++|+|+|.+....... + + .....+.+.++.+.. ++|++. ++.|++++..+.+.|
T Consensus 81 ~~~~----~-~~a~~aGad~I~~~~~~~~~----p-~----~~~~~~~i~~~~~~g-~~~iiv--~v~t~~ea~~a~~~G 143 (219)
T cd04729 81 TIEE----V-DALAAAGADIIALDATDRPR----P-D----GETLAELIKRIHEEY-NCLLMA--DISTLEEALNAAKLG 143 (219)
T ss_pred CHHH----H-HHHHHcCCCEEEEeCCCCCC----C-C----CcCHHHHHHHHHHHh-CCeEEE--ECCCHHHHHHHHHcC
Confidence 1221 2 23346999988775432100 0 0 001234555555554 678776 678999999999999
Q ss_pred CChhhh
Q 020423 290 AHHVMV 295 (326)
Q Consensus 290 aD~V~i 295 (326)
+|.+.+
T Consensus 144 ~d~i~~ 149 (219)
T cd04729 144 FDIIGT 149 (219)
T ss_pred CCEEEc
Confidence 999965
|
This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates. |
| >cd03320 OSBS o-Succinylbenzoate synthase (OSBS) catalyzes the conversion of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate (SHCHC) to 4-(2'-carboxyphenyl)-4-oxobutyrate (o-succinylbenzoate or OSB), a reaction in the menaquinone biosynthetic pathway | Back alignment and domain information |
|---|
Probab=94.14 E-value=1.3 Score=40.43 Aligned_cols=130 Identities=12% Similarity=0.152 Sum_probs=67.9
Q ss_pred cEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCC
Q 020423 126 PIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGV 205 (326)
Q Consensus 126 piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~ 205 (326)
|+..-+...++ +..+.++...+.||..+-+..|. ..++.-.+.++++|+.++..+.+ +...
T Consensus 74 ~~~~~~~~~~~-~~~~~~~~~~~~Gf~~~KiKvg~----------------~~~~~d~~~v~~vr~~~g~~~~l--~vDa 134 (263)
T cd03320 74 PVNALLPAGDA-AALGEAKAAYGGGYRTVKLKVGA----------------TSFEEDLARLRALREALPADAKL--RLDA 134 (263)
T ss_pred ceeEEecCCCH-HHHHHHHHHHhCCCCEEEEEECC----------------CChHHHHHHHHHHHHHcCCCCeE--EEeC
Confidence 33333444555 45566677778899999997541 12344457788888877543333 3322
Q ss_pred CCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHH
Q 020423 206 DDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAA 285 (326)
Q Consensus 206 ~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~ 285 (326)
...-+.++..++ .+.+++.++.++. . ..++.+++.+.++. ..+||.+.=.+.+..++.++
T Consensus 135 N~~w~~~~A~~~-~~~l~~~~i~~iE----q------------P~~~~d~~~~~~l~---~~~PIa~dEs~~~~~~~~~~ 194 (263)
T cd03320 135 NGGWSLEEALAF-LEALAAGRIEYIE----Q------------PLPPDDLAELRRLA---AGVPIALDESLRRLDDPLAL 194 (263)
T ss_pred CCCCCHHHHHHH-HHhhcccCCceEE----C------------CCChHHHHHHHHhh---cCCCeeeCCccccccCHHHH
Confidence 222234455553 4455667777774 0 01112233333332 25566555555555566655
Q ss_pred HHhC-CChhh
Q 020423 286 LRKG-AHHVM 294 (326)
Q Consensus 286 l~~G-aD~V~ 294 (326)
++.+ +|.|+
T Consensus 195 ~~~~~~d~v~ 204 (263)
T cd03320 195 AAAGALGALV 204 (263)
T ss_pred HhcCCCCEEE
Confidence 5543 44443
|
Menaquinone is an essential cofactor for anaerobic growth in eubacteria and some archaea. OSBS belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. |
| >PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=94.14 E-value=0.4 Score=42.31 Aligned_cols=68 Identities=10% Similarity=0.135 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCC
Q 020423 211 YNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGA 290 (326)
Q Consensus 211 ~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~Ga 290 (326)
.++..+ +++.+.+.|+..|.|+-++. ...+.+.++++++++ -+|++|-|.|.++++++++.||
T Consensus 15 ~~~a~~-ia~al~~gGi~~iEit~~tp---------------~a~~~I~~l~~~~~~-~~vGAGTVl~~e~a~~ai~aGA 77 (201)
T PRK06015 15 VEHAVP-LARALAAGGLPAIEITLRTP---------------AALDAIRAVAAEVEE-AIVGAGTILNAKQFEDAAKAGS 77 (201)
T ss_pred HHHHHH-HHHHHHHCCCCEEEEeCCCc---------------cHHHHHHHHHHHCCC-CEEeeEeCcCHHHHHHHHHcCC
Confidence 334444 45566679999999986542 236778888777755 4799999999999999999999
Q ss_pred Chhhh
Q 020423 291 HHVMV 295 (326)
Q Consensus 291 D~V~i 295 (326)
++++.
T Consensus 78 ~FivS 82 (201)
T PRK06015 78 RFIVS 82 (201)
T ss_pred CEEEC
Confidence 98763
|
|
| >PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate | Back alignment and domain information |
|---|
Probab=94.12 E-value=0.27 Score=45.87 Aligned_cols=153 Identities=14% Similarity=0.218 Sum_probs=90.3
Q ss_pred CCcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEecc
Q 020423 124 QHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRI 203 (326)
Q Consensus 124 ~~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~ 203 (326)
..|+.++|-|... .+..+++.++||+-|-+-.+. -+++.+.+..+++++..++ .++.|-.-+-.
T Consensus 73 ~vPValHLDH~~~---~e~i~~ai~~GftSVM~DgS~------------l~~eeNi~~T~~vv~~ah~-~gv~VEaElG~ 136 (287)
T PF01116_consen 73 SVPVALHLDHGKD---FEDIKRAIDAGFTSVMIDGSA------------LPFEENIAITREVVEYAHA-YGVSVEAELGH 136 (287)
T ss_dssp TSEEEEEEEEE-S---HHHHHHHHHHTSSEEEEE-TT------------S-HHHHHHHHHHHHHHHHH-TT-EEEEEESB
T ss_pred CCCEEeecccCCC---HHHHHHHHHhCcccccccCCc------------CCHHHHHHHHHHHHHhhhh-hCCEEEEEeee
Confidence 4566666643221 233444555688888775431 1233667788888877654 35555444321
Q ss_pred -C-CCCC-----------ccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceE
Q 020423 204 -G-VDDH-----------DSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTF 270 (326)
Q Consensus 204 -g-~~~~-----------~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPV 270 (326)
+ .++. .++++.. +..++.|+|.+-|+-++.. +.+.+ ...|.++++.++++.+..+++|+
T Consensus 137 i~g~ed~~~~~~~~~~~~TdP~~a~----~Fv~~TgvD~LAvaiGt~H-G~y~~---~~~p~Ld~~~L~~I~~~~~~iPL 208 (287)
T PF01116_consen 137 IGGKEDGIESEEETESLYTDPEEAK----EFVEETGVDALAVAIGTAH-GMYKG---GKKPKLDFDRLKEIREAVPDIPL 208 (287)
T ss_dssp SSSSCTTCSSSTT-TTCSSSHHHHH----HHHHHHTTSEEEE-SSSBS-SSBSS---SSSTC--HHHHHHHHHHHHTSEE
T ss_pred eeccCCCccccccccccccCHHHHH----HHHHHhCCCEEEEecCccc-cccCC---CCCcccCHHHHHHHHHhcCCCCE
Confidence 1 1111 1344443 4456789999999876641 21111 01345679999998776439999
Q ss_pred EEeCCCCCHH-HHHHHHHhCCChhhhhHHHH
Q 020423 271 TLNGGINTVD-EVNAALRKGAHHVMVGRAAY 300 (326)
Q Consensus 271 Ia~GgI~s~~-da~~~l~~GaD~V~iGRall 300 (326)
+.=||-..++ ++.++++.|+.=|=++|.+.
T Consensus 209 VlHGgSG~~~e~~~~ai~~Gi~KiNi~T~~~ 239 (287)
T PF01116_consen 209 VLHGGSGLPDEQIRKAIKNGISKINIGTELR 239 (287)
T ss_dssp EESSCTTS-HHHHHHHHHTTEEEEEESHHHH
T ss_pred EEECCCCCCHHHHHHHHHcCceEEEEehHHH
Confidence 9999988876 78899999988888888765
|
There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B .... |
| >PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=94.03 E-value=1.5 Score=38.93 Aligned_cols=121 Identities=16% Similarity=0.084 Sum_probs=74.8
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccC-----CCCCc
Q 020423 135 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIG-----VDDHD 209 (326)
Q Consensus 135 ~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g-----~~~~~ 209 (326)
++++..+.|+.+.++|..++++. + .+.++++|+.++.|+....+.. ..-..
T Consensus 21 ~~~~~~~~a~a~~~~G~~~~~~~--------------~----------~~~i~~i~~~~~~Pil~~~~~d~~~~~~~~~~ 76 (221)
T PRK01130 21 SPEIMAAMALAAVQGGAVGIRAN--------------G----------VEDIKAIRAVVDVPIIGIIKRDYPDSEVYITP 76 (221)
T ss_pred CHHHHHHHHHHHHHCCCeEEEcC--------------C----------HHHHHHHHHhCCCCEEEEEecCCCCCCceECC
Confidence 46778888898999999888872 0 3567788888899986444421 10001
Q ss_pred cHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhC
Q 020423 210 SYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKG 289 (326)
Q Consensus 210 ~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~G 289 (326)
..++ + +.+.++|+|+|.+...... .+. .....+.+..+.+. .++|++. ++.+.+++..+.+.|
T Consensus 77 ~~~~----v-~~a~~aGad~I~~d~~~~~----~p~-----~~~~~~~i~~~~~~-~~i~vi~--~v~t~ee~~~a~~~G 139 (221)
T PRK01130 77 TLKE----V-DALAAAGADIIALDATLRP----RPD-----GETLAELVKRIKEY-PGQLLMA--DCSTLEEGLAAQKLG 139 (221)
T ss_pred CHHH----H-HHHHHcCCCEEEEeCCCCC----CCC-----CCCHHHHHHHHHhC-CCCeEEE--eCCCHHHHHHHHHcC
Confidence 1112 2 2334699998877643210 000 00113444444443 4788775 567999999988999
Q ss_pred CChhhhh
Q 020423 290 AHHVMVG 296 (326)
Q Consensus 290 aD~V~iG 296 (326)
+|.+.++
T Consensus 140 ~d~i~~~ 146 (221)
T PRK01130 140 FDFIGTT 146 (221)
T ss_pred CCEEEcC
Confidence 9999773
|
|
| >TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase | Back alignment and domain information |
|---|
Probab=94.02 E-value=0.97 Score=41.53 Aligned_cols=109 Identities=15% Similarity=0.120 Sum_probs=62.0
Q ss_pred ccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEE-EecCCcccCCCCcCCcCCCC
Q 020423 173 VSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFI-IHSRKALLNGISPAENRTIP 251 (326)
Q Consensus 173 gsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~-v~~~~~~~~g~~~~~~~~~~ 251 (326)
+...++..+ ++++ ...+.||.+|-... .+++|+...+.. +.+.|.+-|. +|-+...+.+. ...
T Consensus 116 s~~~~n~~L----L~~~-a~~gkPVilk~G~~----~t~~e~~~Ave~-i~~~Gn~~i~l~~rG~s~y~~~------~~~ 179 (260)
T TIGR01361 116 ARNMQNFEL----LKEV-GKQGKPVLLKRGMG----NTIEEWLYAAEY-ILSSGNGNVILCERGIRTFEKA------TRN 179 (260)
T ss_pred cccccCHHH----HHHH-hcCCCcEEEeCCCC----CCHHHHHHHHHH-HHHcCCCcEEEEECCCCCCCCC------CcC
Confidence 333455554 4444 34689999984443 245565554443 4457775444 46434322111 112
Q ss_pred CccHHHHHHHHhcCCCceEEE-eCCCCC-----HHHHHHHHHhCCChhhhhHH
Q 020423 252 PLKYEYYYALLRDFPDLTFTL-NGGINT-----VDEVNAALRKGAHHVMVGRA 298 (326)
Q Consensus 252 ~~~~~~i~~i~~~~~~iPVIa-~GgI~s-----~~da~~~l~~GaD~V~iGRa 298 (326)
..++..+..+++.+ ++||+. ++-... +..+..++..|||++++=+-
T Consensus 180 ~~dl~~i~~lk~~~-~~pV~~ds~Hs~G~r~~~~~~~~aAva~Ga~gl~iE~H 231 (260)
T TIGR01361 180 TLDLSAVPVLKKET-HLPIIVDPSHAAGRRDLVIPLAKAAIAAGADGLMIEVH 231 (260)
T ss_pred CcCHHHHHHHHHhh-CCCEEEcCCCCCCccchHHHHHHHHHHcCCCEEEEEeC
Confidence 35677777777665 899999 333222 45566777899998876543
|
The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis. |
| >PRK01261 aroD 3-dehydroquinate dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=93.97 E-value=2.6 Score=37.94 Aligned_cols=87 Identities=9% Similarity=-0.009 Sum_probs=61.3
Q ss_pred CCcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEecc
Q 020423 124 QHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRI 203 (326)
Q Consensus 124 ~~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~ 203 (326)
...+++.|.+.+.++....++.+...|+|.||+-.. .|.. .+...+.++++.+++. +.|+.+-+|.
T Consensus 20 ~p~Icvpi~~~~~ee~~~~~~~~~~~~aDivE~RlD----------~l~~---~~~~~~~~~~~~l~~~-~~p~I~T~R~ 85 (229)
T PRK01261 20 QPIVVESIFFKDIKEMKERFKTKVLSDKNLYEIRFD----------LFHD---HSIESEPEIISALNEM-DIDYIFTYRG 85 (229)
T ss_pred CcEEEEEeCCCCHHHHHHHHHHhhcCCCCEEEEEee----------ccCC---CChHHHHHHHHHHhhc-CCCEEEEEcC
Confidence 345789999999999998889899889999999653 2221 2345566777777654 8899999995
Q ss_pred CCCCCccHHHHHHHHHHHhhhCCccEEEEe
Q 020423 204 GVDDHDSYNQLCDFIYKVSSLSPTRHFIIH 233 (326)
Q Consensus 204 g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~ 233 (326)
+ + . .++ +..+.+ .++|++++.
T Consensus 86 ~-~---~-~~~---l~~a~~-~~~d~vDIE 106 (229)
T PRK01261 86 V-D---A-RKY---YETAID-KMPPAVDLD 106 (229)
T ss_pred C-C---H-HHH---HHHHHh-hCCCEEEEE
Confidence 4 1 1 222 233333 678999985
|
|
| >COG0149 TpiA Triosephosphate isomerase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.94 E-value=0.75 Score=41.86 Aligned_cols=47 Identities=13% Similarity=0.190 Sum_probs=39.6
Q ss_pred CCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhCCchhHHhHHHh
Q 020423 266 PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTA 313 (326)
Q Consensus 266 ~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~dP~l~~~~i~~~ 313 (326)
.++||+..|+|....+.+.+.+.++|++.||++.|.-.+ |...++..
T Consensus 201 ~~v~IlYGGSV~~~N~~e~~~~~~idG~LVGgAslka~~-f~~ii~~~ 247 (251)
T COG0149 201 EKVRILYGGSVKPGNAAELAAQPDIDGALVGGASLKADD-FLAILEAL 247 (251)
T ss_pred CCeEEEEeCCcChhHHHHHhcCCCCCeEEEcceeecchh-HHHHHHHH
Confidence 489999999998888888777899999999999998777 66666653
|
|
| >PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B | Back alignment and domain information |
|---|
Probab=93.92 E-value=0.13 Score=46.59 Aligned_cols=89 Identities=18% Similarity=0.192 Sum_probs=52.8
Q ss_pred HHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHH
Q 020423 140 AKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIY 219 (326)
Q Consensus 140 ~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia 219 (326)
+-.|+.++++||+++-+...+-.......|. | + -..+.+.+.++.|...+++|+++-+..|+-+ +...+.+.+
T Consensus 19 ~~SAr~~e~~Gf~ai~~sg~~~a~s~G~pD~-~--~-lt~~e~~~~~~~I~~~~~iPv~vD~d~GyG~--~~~~v~~tv- 91 (238)
T PF13714_consen 19 ALSARLAERAGFDAIATSGAGVAASLGYPDG-G--L-LTLTEMLAAVRRIARAVSIPVIVDADTGYGN--DPENVARTV- 91 (238)
T ss_dssp HHHHHHHHHTT-SEEEEHHHHHHHHTTS-SS-S----S-HHHHHHHHHHHHHHSSSEEEEE-TTTSSS--SHHHHHHHH-
T ss_pred HHHHHHHHHcCCCEEEechHHHHHHcCCCCC-C--C-CCHHHHHHHHHHHHhhhcCcEEEEcccccCc--hhHHHHHHH-
Confidence 3467888999999988842110000001121 1 1 2345566778888888899999999988765 123333333
Q ss_pred HHhhhCCccEEEEecC
Q 020423 220 KVSSLSPTRHFIIHSR 235 (326)
Q Consensus 220 ~~le~~Gvd~I~v~~~ 235 (326)
+.++++|+..|++...
T Consensus 92 ~~~~~aG~agi~IEDq 107 (238)
T PF13714_consen 92 RELERAGAAGINIEDQ 107 (238)
T ss_dssp HHHHHCT-SEEEEESB
T ss_pred HHHHHcCCcEEEeecc
Confidence 3456899999999765
|
... |
| >PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=93.82 E-value=0.28 Score=43.70 Aligned_cols=68 Identities=12% Similarity=0.193 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCC
Q 020423 211 YNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGA 290 (326)
Q Consensus 211 ~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~Ga 290 (326)
.++..+ +++.+.+.|++.|.|.-++. ...+.++++++++++ -+|++|-|.+.++++.+++.||
T Consensus 26 ~~~a~~-i~~al~~~Gi~~iEitl~~~---------------~~~~~I~~l~~~~p~-~~IGAGTVl~~~~a~~a~~aGA 88 (212)
T PRK05718 26 LEDAVP-LAKALVAGGLPVLEVTLRTP---------------AALEAIRLIAKEVPE-ALIGAGTVLNPEQLAQAIEAGA 88 (212)
T ss_pred HHHHHH-HHHHHHHcCCCEEEEecCCc---------------cHHHHHHHHHHHCCC-CEEEEeeccCHHHHHHHHHcCC
Confidence 444444 45566679999999874321 236778888888866 4799999999999999999999
Q ss_pred Chhhh
Q 020423 291 HHVMV 295 (326)
Q Consensus 291 D~V~i 295 (326)
|+++.
T Consensus 89 ~Fivs 93 (212)
T PRK05718 89 QFIVS 93 (212)
T ss_pred CEEEC
Confidence 98864
|
|
| >cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis | Back alignment and domain information |
|---|
Probab=93.71 E-value=2 Score=39.71 Aligned_cols=126 Identities=14% Similarity=0.106 Sum_probs=74.3
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC--CCcEEEEeccCCCCCccHH
Q 020423 135 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYN 212 (326)
Q Consensus 135 ~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~--~~pv~vK~r~g~~~~~~~~ 212 (326)
+.+.+.+-.+++.+.|.+++-++... ++ + ..-..+.-.++++.+++.+ +.|+.+.+.. .+.+
T Consensus 19 D~~~~~~~i~~l~~~Gv~gl~v~Gst--------GE-~--~~lt~~Er~~l~~~~~~~~~~~~~vi~gv~~-----~~~~ 82 (284)
T cd00950 19 DFDALERLIEFQIENGTDGLVVCGTT--------GE-S--PTLSDEEHEAVIEAVVEAVNGRVPVIAGTGS-----NNTA 82 (284)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCC--------cc-h--hhCCHHHHHHHHHHHHHHhCCCCcEEeccCC-----ccHH
Confidence 67889999999999999999997432 11 1 1112233344444444444 4677665443 2344
Q ss_pred HHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEE------eCCCCCHHHHHHHH
Q 020423 213 QLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTL------NGGINTVDEVNAAL 286 (326)
Q Consensus 213 e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa------~GgI~s~~da~~~l 286 (326)
+.++ .++..++.|+|.+.+...... ..+ ...-.+++.++.+. .++||+. .|--.+++.+.++.
T Consensus 83 ~~~~-~a~~a~~~G~d~v~~~~P~~~--~~~-------~~~l~~~~~~ia~~-~~~pi~lYn~P~~~g~~ls~~~~~~L~ 151 (284)
T cd00950 83 EAIE-LTKRAEKAGADAALVVTPYYN--KPS-------QEGLYAHFKAIAEA-TDLPVILYNVPGRTGVNIEPETVLRLA 151 (284)
T ss_pred HHHH-HHHHHHHcCCCEEEEcccccC--CCC-------HHHHHHHHHHHHhc-CCCCEEEEEChhHhCCCCCHHHHHHHh
Confidence 5555 455667899999988743210 000 01124556666655 4788763 46566777777766
Q ss_pred H
Q 020423 287 R 287 (326)
Q Consensus 287 ~ 287 (326)
+
T Consensus 152 ~ 152 (284)
T cd00950 152 E 152 (284)
T ss_pred c
Confidence 5
|
It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways. |
| >cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA) | Back alignment and domain information |
|---|
Probab=93.68 E-value=1.7 Score=40.83 Aligned_cols=126 Identities=12% Similarity=-0.001 Sum_probs=71.7
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC--CCcEEEEeccCCCCCccHH
Q 020423 135 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYN 212 (326)
Q Consensus 135 ~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~--~~pv~vK~r~g~~~~~~~~ 212 (326)
+.+.+.+..++..+.|.+||=++... |+ +-+ -..+.-.++++.+++.+ ++||.+.+... +++
T Consensus 27 D~~~l~~lv~~li~~Gv~Gi~v~Gst--------GE-~~~--Lt~eEr~~v~~~~~~~~~grvpvi~Gv~~~-----~t~ 90 (309)
T cd00952 27 DLDETARLVERLIAAGVDGILTMGTF--------GE-CAT--LTWEEKQAFVATVVETVAGRVPVFVGATTL-----NTR 90 (309)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECccc--------cc-chh--CCHHHHHHHHHHHHHHhCCCCCEEEEeccC-----CHH
Confidence 67889999999999999999997532 22 111 12333344444444433 47888765432 234
Q ss_pred HHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEE------eCCCCCHHHHHHHH
Q 020423 213 QLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTL------NGGINTVDEVNAAL 286 (326)
Q Consensus 213 e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa------~GgI~s~~da~~~l 286 (326)
+.++ .++..++.|+|.+-+..-.. ...+ ...-.++++++.+..+++||+. .|--.+++.+.++.
T Consensus 91 ~ai~-~a~~A~~~Gad~vlv~~P~y--~~~~-------~~~l~~yf~~va~a~~~lPv~iYn~P~~tg~~l~~~~l~~L~ 160 (309)
T cd00952 91 DTIA-RTRALLDLGADGTMLGRPMW--LPLD-------VDTAVQFYRDVAEAVPEMAIAIYANPEAFKFDFPRAAWAELA 160 (309)
T ss_pred HHHH-HHHHHHHhCCCEEEECCCcC--CCCC-------HHHHHHHHHHHHHhCCCCcEEEEcCchhcCCCCCHHHHHHHh
Confidence 5555 45666789999998875321 0000 0112445555555432577653 23344566666554
|
HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases. |
| >COG1954 GlpP Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription] | Back alignment and domain information |
|---|
Probab=93.57 E-value=0.43 Score=40.71 Aligned_cols=56 Identities=20% Similarity=0.144 Sum_probs=43.1
Q ss_pred HhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhh
Q 020423 221 VSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVM 294 (326)
Q Consensus 221 ~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~ 294 (326)
..++.+.|+|.|-.+- --..+.++.++. ++|||+.|-|.+-|++.+++++||-.|.
T Consensus 116 ~i~~~~pD~iEvLPGv-----------------~Pkvi~~i~~~t-~~piIAGGLi~t~Eev~~Al~aGA~avS 171 (181)
T COG1954 116 QIEKSEPDFIEVLPGV-----------------MPKVIKEITEKT-HIPIIAGGLIETEEEVREALKAGAVAVS 171 (181)
T ss_pred HHHHcCCCEEEEcCcc-----------------cHHHHHHHHHhc-CCCEEeccccccHHHHHHHHHhCcEEEe
Confidence 3456889999875431 134556666664 9999999999999999999999987776
|
|
| >PRK11572 copper homeostasis protein CutC; Provisional | Back alignment and domain information |
|---|
Probab=93.54 E-value=1.9 Score=39.24 Aligned_cols=125 Identities=7% Similarity=0.035 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHH
Q 020423 137 DNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 216 (326)
Q Consensus 137 ~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~ 216 (326)
+.+.+-++.++++|+|||-+-+-.|.. . -+.+.+.++++... +.|+++--.+ +...+..+.
T Consensus 73 ~~M~~di~~~~~~GadGvV~G~L~~dg------~------vD~~~~~~Li~~a~---~~~vTFHRAf--D~~~d~~~a-- 133 (248)
T PRK11572 73 AAMLEDIATVRELGFPGLVTGVLDVDG------H------VDMPRMRKIMAAAG---PLAVTFHRAF--DMCANPLNA-- 133 (248)
T ss_pred HHHHHHHHHHHHcCCCEEEEeeECCCC------C------cCHHHHHHHHHHhc---CCceEEechh--hccCCHHHH--
Confidence 445566678899999999986533321 1 35666777776652 4666654333 222233232
Q ss_pred HHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhh
Q 020423 217 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMV 295 (326)
Q Consensus 217 ~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~i 295 (326)
+. .+.+.|++.|--||+... -....+.++++.+...+.-|+..||| +++.+.++.++|+.-+=.
T Consensus 134 -l~-~l~~lG~~rILTSGg~~~------------a~~g~~~L~~lv~~a~~~~Im~GgGV-~~~Nv~~l~~tG~~~~H~ 197 (248)
T PRK11572 134 -LK-QLADLGVARILTSGQQQD------------AEQGLSLIMELIAASDGPIIMAGAGV-RLSNLHKFLDAGVREVHS 197 (248)
T ss_pred -HH-HHHHcCCCEEECCCCCCC------------HHHHHHHHHHHHHhcCCCEEEeCCCC-CHHHHHHHHHcCCCEEee
Confidence 22 234579999977765421 01125667777765544447778888 677788887788776654
|
|
| >TIGR01740 pyrF orotidine 5'-phosphate decarboxylase, subfamily 1 | Back alignment and domain information |
|---|
Probab=93.52 E-value=1.8 Score=38.31 Aligned_cols=142 Identities=15% Similarity=0.047 Sum_probs=78.1
Q ss_pred CCCcEEEEec-CCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCC--cEEE
Q 020423 123 EQHPIVLQIG-GSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNV--PVSV 199 (326)
Q Consensus 123 ~~~piivQL~-g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~--pv~v 199 (326)
.+.++++-+- +.-++....+++.+.++|+|.+.+|.. +| .+-+...++..++. +. -+.+
T Consensus 48 ~~~~v~lD~K~~Dig~t~~~~~~~~~~~gad~vTvh~~------------~g-----~~~l~~~~~~~~~~-~~~v~~v~ 109 (213)
T TIGR01740 48 LNKLIFLDLKFADIPNTVKLQYESKIKQGADMVNVHGV------------AG-----SESVEAAKEAASEG-GRGLLAVT 109 (213)
T ss_pred cCCCEEEEEeecchHHHHHHHHHHHHhcCCCEEEEcCC------------CC-----HHHHHHHHHHhhcC-CCeEEEEE
Confidence 3456777764 223445556666677899999999852 11 33355555555432 22 1223
Q ss_pred Eecc-CCCC-CccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCC
Q 020423 200 KCRI-GVDD-HDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGIN 277 (326)
Q Consensus 200 K~r~-g~~~-~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~ 277 (326)
.++. +..+ ...+.+....+++...+.|++.+..+ -+.+..+++...+ -++.++||+
T Consensus 110 ~lss~~~~~~~~~~~~~v~~~a~~~~~~g~~g~v~~---------------------~~~~~~ir~~~~~-~~~vtPGI~ 167 (213)
T TIGR01740 110 ELTSMGSLDYGEDTMEKVLEYAKEAKAFGLDGPVCS---------------------AEEAKEIRKFTGD-FLILTPGIR 167 (213)
T ss_pred cCCCCChhhhCcCHHHHHHHHHHHhhhcCCeEEEeC---------------------HHHHHHHHHhcCC-ceEEeCCcC
Confidence 3332 2111 11232222223444455677666422 1223334443333 468889987
Q ss_pred CHH--H--------HHHHHHhCCChhhhhHHHHhCCc
Q 020423 278 TVD--E--------VNAALRKGAHHVMVGRAAYQNPW 304 (326)
Q Consensus 278 s~~--d--------a~~~l~~GaD~V~iGRall~dP~ 304 (326)
-.. . +.++.+.|+|.+.+||+++..++
T Consensus 168 ~~g~~~~dq~~~~~~~~~~~~Gad~iVvGr~I~~~~d 204 (213)
T TIGR01740 168 LQSKGADDQQRVVTLEDAKEAGADVIIVGRGIYAAED 204 (213)
T ss_pred CCCCCcCCccccCCHHHHHHcCCCEEEEChhhcCCCC
Confidence 431 1 25677899999999999998777
|
This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. In many eukaryotes, the region hit by this model is part of a multifunctional protein. |
| >TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase | Back alignment and domain information |
|---|
Probab=93.45 E-value=2.1 Score=37.35 Aligned_cols=130 Identities=12% Similarity=0.069 Sum_probs=74.7
Q ss_pred EEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC-CCcEEEEeccCC
Q 020423 127 IVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCRIGV 205 (326)
Q Consensus 127 iivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~-~~pv~vK~r~g~ 205 (326)
+++-|-..+.++..+.++.+ +.|+|.||+.. +.. . .+| .++++.+|+.. +..+.+-+..-
T Consensus 2 l~~alD~~~~~~a~~~~~~l-~~~v~~iev~~--~l~--~---~~g----------~~~i~~l~~~~~~~~i~~d~k~~- 62 (206)
T TIGR03128 2 LQLALDLLDIEEALELAEKV-ADYVDIIEIGT--PLI--K---NEG----------IEAVKEMKEAFPDRKVLADLKTM- 62 (206)
T ss_pred eEEEecCCCHHHHHHHHHHc-ccCeeEEEeCC--HHH--H---HhC----------HHHHHHHHHHCCCCEEEEEEeec-
Confidence 34445567788888888888 77899999932 110 1 123 35666666653 34444333221
Q ss_pred CCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEe-CCCCC-HHHHH
Q 020423 206 DDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLN-GGINT-VDEVN 283 (326)
Q Consensus 206 ~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~-GgI~s-~~da~ 283 (326)
+..+. + .+.+.++|+|+|.+|.-.. +.....+.+..++. +++++.. =+..+ .+++.
T Consensus 63 -d~~~~-~-----~~~~~~~Gad~i~vh~~~~--------------~~~~~~~i~~~~~~-g~~~~~~~~~~~t~~~~~~ 120 (206)
T TIGR03128 63 -DAGEY-E-----AEQAFAAGADIVTVLGVAD--------------DATIKGAVKAAKKH-GKEVQVDLINVKDKVKRAK 120 (206)
T ss_pred -cchHH-H-----HHHHHHcCCCEEEEeccCC--------------HHHHHHHHHHHHHc-CCEEEEEecCCCChHHHHH
Confidence 11111 1 2233469999999996421 01122233334454 7887764 24444 47788
Q ss_pred HHHHhCCChhhhhH
Q 020423 284 AALRKGAHHVMVGR 297 (326)
Q Consensus 284 ~~l~~GaD~V~iGR 297 (326)
.+.+.|+|.|.+..
T Consensus 121 ~~~~~g~d~v~~~p 134 (206)
T TIGR03128 121 ELKELGADYIGVHT 134 (206)
T ss_pred HHHHcCCCEEEEcC
Confidence 88888999998753
|
at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase. |
| >cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases | Back alignment and domain information |
|---|
Probab=93.41 E-value=6.6 Score=36.49 Aligned_cols=69 Identities=16% Similarity=0.101 Sum_probs=51.1
Q ss_pred CCCCcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEe
Q 020423 122 PEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKC 201 (326)
Q Consensus 122 ~~~~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~ 201 (326)
....|+++++.. +.++-.+.++.++++|+|++-+- .|. |-. ...+-+.+..+.|.++++.|+.+=-
T Consensus 67 ~~~~pvi~gv~~-~t~~~i~~a~~a~~~Gad~v~~~--pP~--------y~~---~~~~~i~~~f~~v~~~~~~pi~lYn 132 (289)
T cd00951 67 AGRVPVLAGAGY-GTATAIAYAQAAEKAGADGILLL--PPY--------LTE---APQEGLYAHVEAVCKSTDLGVIVYN 132 (289)
T ss_pred CCCCCEEEecCC-CHHHHHHHHHHHHHhCCCEEEEC--CCC--------CCC---CCHHHHHHHHHHHHhcCCCCEEEEe
Confidence 345789999976 88888999999999999999883 232 110 2356677777888778899988865
Q ss_pred ccC
Q 020423 202 RIG 204 (326)
Q Consensus 202 r~g 204 (326)
+.+
T Consensus 133 ~~g 135 (289)
T cd00951 133 RAN 135 (289)
T ss_pred CCC
Confidence 544
|
The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate. |
| >COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.41 E-value=0.88 Score=40.29 Aligned_cols=67 Identities=18% Similarity=0.237 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCC
Q 020423 211 YNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGA 290 (326)
Q Consensus 211 ~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~Ga 290 (326)
.++... +++.+-+.|++.|.|.-++. ...+.++++++++++ -+|+.|=|-+++++.++.+.||
T Consensus 24 ~e~a~~-~a~Ali~gGi~~IEITl~sp---------------~a~e~I~~l~~~~p~-~lIGAGTVL~~~q~~~a~~aGa 86 (211)
T COG0800 24 VEEALP-LAKALIEGGIPAIEITLRTP---------------AALEAIRALAKEFPE-ALIGAGTVLNPEQARQAIAAGA 86 (211)
T ss_pred HHHHHH-HHHHHHHcCCCeEEEecCCC---------------CHHHHHHHHHHhCcc-cEEccccccCHHHHHHHHHcCC
Confidence 444444 45566679999999986542 236788888888864 4899999999999999999999
Q ss_pred Chhh
Q 020423 291 HHVM 294 (326)
Q Consensus 291 D~V~ 294 (326)
+++.
T Consensus 87 ~fiV 90 (211)
T COG0800 87 QFIV 90 (211)
T ss_pred CEEE
Confidence 9875
|
|
| >PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=93.40 E-value=0.98 Score=40.50 Aligned_cols=67 Identities=16% Similarity=0.253 Sum_probs=47.6
Q ss_pred HHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHH----hcCCCceEEEeCCCCCHHHHHHHHH
Q 020423 212 NQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALL----RDFPDLTFTLNGGINTVDEVNAALR 287 (326)
Q Consensus 212 ~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~----~~~~~iPVIa~GgI~s~~da~~~l~ 287 (326)
++..+ +++.+.+.|+..+.|+-++. ...+.+.+++ ++++++ ++++|-|.|.++++++++
T Consensus 27 ~~a~~-~~~al~~gGi~~iEiT~~tp---------------~a~~~i~~l~~~~~~~~p~~-~vGaGTVl~~e~a~~a~~ 89 (222)
T PRK07114 27 EVAKK-VIKACYDGGARVFEFTNRGD---------------FAHEVFAELVKYAAKELPGM-ILGVGSIVDAATAALYIQ 89 (222)
T ss_pred HHHHH-HHHHHHHCCCCEEEEeCCCC---------------cHHHHHHHHHHHHHhhCCCe-EEeeEeCcCHHHHHHHHH
Confidence 34444 45566679999999986542 1244455443 334443 799999999999999999
Q ss_pred hCCChhhh
Q 020423 288 KGAHHVMV 295 (326)
Q Consensus 288 ~GaD~V~i 295 (326)
.||++++.
T Consensus 90 aGA~FiVs 97 (222)
T PRK07114 90 LGANFIVT 97 (222)
T ss_pred cCCCEEEC
Confidence 99998863
|
|
| >PRK09016 quinolinate phosphoribosyltransferase; Validated | Back alignment and domain information |
|---|
Probab=93.40 E-value=0.59 Score=43.68 Aligned_cols=62 Identities=10% Similarity=0.140 Sum_probs=44.6
Q ss_pred hCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcC-CCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhC
Q 020423 224 LSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF-PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN 302 (326)
Q Consensus 224 ~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~-~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~d 302 (326)
++|+|.|-+..-+ .+.++++.+.. .++.+.++||| +.+.+.++.++|+|.+.+|.....-
T Consensus 226 ~~gaDiI~LDn~s------------------~e~~~~av~~~~~~~~ieaSGGI-~~~ni~~yA~tGVD~Is~galthsa 286 (296)
T PRK09016 226 KAGADIIMLDNFT------------------TEQMREAVKRTNGRALLEVSGNV-TLETLREFAETGVDFISVGALTKHV 286 (296)
T ss_pred HcCCCEEEeCCCC------------------hHHHHHHHHhhcCCeEEEEECCC-CHHHHHHHHhcCCCEEEeCccccCC
Confidence 5899999876422 12233333221 27889999999 8999999999999999999865544
Q ss_pred Cc
Q 020423 303 PW 304 (326)
Q Consensus 303 P~ 304 (326)
|+
T Consensus 287 ~~ 288 (296)
T PRK09016 287 QA 288 (296)
T ss_pred Cc
Confidence 54
|
|
| >TIGR03247 glucar-dehydr glucarate dehydratase | Back alignment and domain information |
|---|
Probab=93.36 E-value=1.7 Score=43.10 Aligned_cols=121 Identities=13% Similarity=0.045 Sum_probs=65.7
Q ss_pred CHHHHHHHHHHHH-HCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHH
Q 020423 135 NLDNLAKATELAN-AYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQ 213 (326)
Q Consensus 135 ~~~~f~~aA~~a~-~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e 213 (326)
+++++.+.|++.. +.||..+-+..|.+ +++.-.+.++++|++++ .++++......-+.++
T Consensus 180 ~~e~~~~~a~~~~~~~Gf~a~KiKvG~~----------------~~~~Di~~v~avRea~~---d~~L~vDAN~~wt~~~ 240 (441)
T TIGR03247 180 TPEAVVRLAEAAYDRYGFRDFKLKGGVL----------------RGEEEIEAVTALAKRFP---QARITLDPNGAWSLDE 240 (441)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEecCCC----------------ChHHHHHHHHHHHHhCC---CCeEEEECCCCCCHHH
Confidence 5677777776554 46999999976422 12333567788887762 2233332222223445
Q ss_pred HHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCcc----HHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhC
Q 020423 214 LCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLK----YEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKG 289 (326)
Q Consensus 214 ~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~----~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~G 289 (326)
..++ .+.+++. +.++. . ..++.+ ++.++++++.. ++||.+.=.+.+..++.++++.|
T Consensus 241 Ai~~-~~~Le~~-~~~iE----e------------Pv~~~d~~~~~~~la~Lr~~~-~iPIa~dEs~~~~~~~~~li~~~ 301 (441)
T TIGR03247 241 AIAL-CKDLKGV-LAYAE----D------------PCGAEQGYSGREVMAEFRRAT-GLPTATNMIATDWRQMGHALQLQ 301 (441)
T ss_pred HHHH-HHHhhhh-hceEe----C------------CCCcccccchHHHHHHHHHhC-CCCEEcCCccCCHHHHHHHHHhC
Confidence 4553 3445555 55442 0 111222 45555665543 77776655666777777777644
Q ss_pred -CChh
Q 020423 290 -AHHV 293 (326)
Q Consensus 290 -aD~V 293 (326)
+|.+
T Consensus 302 avdi~ 306 (441)
T TIGR03247 302 AVDIP 306 (441)
T ss_pred CCCEE
Confidence 5553
|
Glucarate dehydratase converts D-glucarate (and L-idarate, a stereoisomer) to 5-dehydro-4-deoxyglucarate which is subsequently acted on by GarL, tartronate semialdehyde reductase and glycerate kinase (, GenProp0716). The E. coli enzyme has been well-characterized. |
| >PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=93.32 E-value=2.5 Score=40.29 Aligned_cols=109 Identities=17% Similarity=0.113 Sum_probs=61.1
Q ss_pred cccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEE-EecCCcccCCCCcCCcCCC
Q 020423 172 GVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFI-IHSRKALLNGISPAENRTI 250 (326)
Q Consensus 172 Ggsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~-v~~~~~~~~g~~~~~~~~~ 250 (326)
|+..+++..++.++ ...+.||.+|-... .+++|+...+ +.+...|-+-++ +|-+...+.+ ...
T Consensus 183 gAr~~~N~~LL~~v-----a~~~kPViLk~G~~----~ti~E~l~A~-e~i~~~GN~~viL~erG~~tf~~------~~~ 246 (335)
T PRK08673 183 GARNMQNFDLLKEV-----GKTNKPVLLKRGMS----ATIEEWLMAA-EYILAEGNPNVILCERGIRTFET------ATR 246 (335)
T ss_pred CcccccCHHHHHHH-----HcCCCcEEEeCCCC----CCHHHHHHHH-HHHHHcCCCeEEEEECCCCCCCC------cCh
Confidence 33344566655544 34689999995443 2455655533 334456765444 4533322211 112
Q ss_pred CCccHHHHHHHHhcCCCceEEEe----CCCCC--HHHHHHHHHhCCChhhhhH
Q 020423 251 PPLKYEYYYALLRDFPDLTFTLN----GGINT--VDEVNAALRKGAHHVMVGR 297 (326)
Q Consensus 251 ~~~~~~~i~~i~~~~~~iPVIa~----GgI~s--~~da~~~l~~GaD~V~iGR 297 (326)
...++..+..+++.. +.|||+. +|.++ +..+..++..|||++++=+
T Consensus 247 ~~ldl~ai~~lk~~~-~lPVi~d~sH~~G~~~~v~~~a~AAvA~GAdGliIE~ 298 (335)
T PRK08673 247 NTLDLSAVPVIKKLT-HLPVIVDPSHATGKRDLVEPLALAAVAAGADGLIVEV 298 (335)
T ss_pred hhhhHHHHHHHHHhc-CCCEEEeCCCCCccccchHHHHHHHHHhCCCEEEEEe
Confidence 234566666666554 7999884 33321 2456777789999888754
|
|
| >cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS) | Back alignment and domain information |
|---|
Probab=93.29 E-value=1.6 Score=37.91 Aligned_cols=129 Identities=9% Similarity=0.102 Sum_probs=79.5
Q ss_pred EEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhc-CCCcEEEEeccCC
Q 020423 127 IVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAAN-TNVPVSVKCRIGV 205 (326)
Q Consensus 127 iivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~-~~~pv~vK~r~g~ 205 (326)
+++-|-..+.++..+.++.+.+. ++.+|++. |. .. .+| .+.++.+++. .+.|+.+-+...
T Consensus 3 ~~~a~d~~~~~~~~~~~~~l~~~-i~~ieig~--~~--~~---~~g----------~~~i~~i~~~~~~~~i~~~~~v~- 63 (202)
T cd04726 3 LQVALDLLDLEEALELAKKVPDG-VDIIEAGT--PL--IK---SEG----------MEAVRALREAFPDKIIVADLKTA- 63 (202)
T ss_pred eEEEEcCCCHHHHHHHHHHhhhc-CCEEEcCC--HH--HH---HhC----------HHHHHHHHHHCCCCEEEEEEEec-
Confidence 34444445778888888888888 99999953 21 11 123 4567777765 477877643332
Q ss_pred CCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEe-CCCCCHHHHHH
Q 020423 206 DDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLN-GGINTVDEVNA 284 (326)
Q Consensus 206 ~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~-GgI~s~~da~~ 284 (326)
+... . ..+.+.++|+|++++|.... +...+.+.+..++. +++++.. =+..|++++.+
T Consensus 64 -~~~~--~----~~~~~~~aGad~i~~h~~~~--------------~~~~~~~i~~~~~~-g~~~~v~~~~~~t~~e~~~ 121 (202)
T cd04726 64 -DAGA--L----EAEMAFKAGADIVTVLGAAP--------------LSTIKKAVKAAKKY-GKEVQVDLIGVEDPEKRAK 121 (202)
T ss_pred -cccH--H----HHHHHHhcCCCEEEEEeeCC--------------HHHHHHHHHHHHHc-CCeEEEEEeCCCCHHHHHH
Confidence 1111 1 12234469999999997431 00122223333444 6777663 77789999988
Q ss_pred HHHhCCChhhhh
Q 020423 285 ALRKGAHHVMVG 296 (326)
Q Consensus 285 ~l~~GaD~V~iG 296 (326)
++..|+|.|.+.
T Consensus 122 ~~~~~~d~v~~~ 133 (202)
T cd04726 122 LLKLGVDIVILH 133 (202)
T ss_pred HHHCCCCEEEEc
Confidence 778899998874
|
KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates. |
| >cd00003 PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase domain; pyridoxal 5'-phosphate is the active form of vitamin B6 that acts as an essential, ubiquitous coenzyme in amino acid metabolism | Back alignment and domain information |
|---|
Probab=93.25 E-value=1 Score=40.51 Aligned_cols=150 Identities=13% Similarity=0.088 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHHCCCCEEEecCC----------------------------------------------CCCCcccCCCC
Q 020423 137 DNLAKATELANAYNYDEINLNCG----------------------------------------------CPSPKVAGHGC 170 (326)
Q Consensus 137 ~~f~~aA~~a~~aG~d~Iein~g----------------------------------------------~P~~~~~r~d~ 170 (326)
.+..++|..+.++|+|+|.+|.- -|......+-+
T Consensus 21 Pdpv~aA~~a~~aGAdgITvHlReDrRHI~d~Dv~~L~~~~~~~lNlE~a~t~em~~ia~~~kP~~vtLVPEkr~E~TTe 100 (234)
T cd00003 21 PDPVEAALLAEKAGADGITVHLREDRRHIQDRDVRLLRELVRTELNLEMAPTEEMLEIALEVKPHQVTLVPEKREELTTE 100 (234)
T ss_pred CCHHHHHHHHHHcCCCEEEecCCCCcCcCCHHHHHHHHHHcCCCEEeccCCCHHHHHHHHHCCCCEEEECCCCCCCccCC
Confidence 45678899999999999999742 12222122333
Q ss_pred ccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCC
Q 020423 171 FGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 250 (326)
Q Consensus 171 yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~ 250 (326)
=|-++..+.+.+.++++.+++. |+.+++-+-+. .++ ++ ...+.|+|.|.+|.+.... .+... ..
T Consensus 101 gGldv~~~~~~l~~~i~~l~~~-gI~VSLFiDPd------~~q-i~----~A~~~GAd~VELhTG~Ya~-a~~~~---~~ 164 (234)
T cd00003 101 GGLDVAGQAEKLKPIIERLKDA-GIRVSLFIDPD------PEQ-IE----AAKEVGADRVELHTGPYAN-AYDKA---ER 164 (234)
T ss_pred ccchhhcCHHHHHHHHHHHHHC-CCEEEEEeCCC------HHH-HH----HHHHhCcCEEEEechhhhc-CCCch---hH
Confidence 2667778889999999998654 77777765442 222 12 2246899999999764211 00000 00
Q ss_pred CCccHHHHHHHHhcC--CCceEEEeCCCCCHHHHHHHHH-hCCChhhhhHHHHhCCc
Q 020423 251 PPLKYEYYYALLRDF--PDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQNPW 304 (326)
Q Consensus 251 ~~~~~~~i~~i~~~~--~~iPVIa~GgI~s~~da~~~l~-~GaD~V~iGRall~dP~ 304 (326)
..-++.+....+.. ..+-|=+.-|+ +.+.+..+.+ -+.+=|.||.+++++--
T Consensus 165 -~~el~~i~~aa~~a~~~GL~VnAGHgL-ny~Nv~~i~~ip~i~ElnIGHsiia~Al 219 (234)
T cd00003 165 -EAELERIAKAAKLARELGLGVNAGHGL-NYENVKPIAKIPGIAELNIGHAIISRAL 219 (234)
T ss_pred -HHHHHHHHHHHHHHHHcCCEEecCCCC-CHHHHHHHHhCCCCeEEccCHHHHHHHH
Confidence 00122222222211 25666666666 6777777666 56888899998887654
|
In bacteria, formation of pyridoxine 5'-phosphate is a step in the biosynthesis of vitamin B6. PNP synthase, a homooctameric enzyme, catalyzes the final step in PNP biosynthesis, the condensation of 1-amino-acetone 3-phosphate and 1-deoxy-D-xylulose 5-phosphate. PNP synthase adopts a TIM barrel topology, intersubunit contacts are mediated by three ''extra'' helices, generating a tetramer of symmetric dimers with shared active sites; the open state has been proposed to accept substrates and to release products, while most of the catalytic events are likely to occur in the closed state; a hydrophilic channel running through the center of the barrel was identified as the essential structural feature that enables PNP synthase to release water molecules produced during the reaction from the closed, |
| >cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes | Back alignment and domain information |
|---|
Probab=93.18 E-value=0.97 Score=42.30 Aligned_cols=85 Identities=18% Similarity=0.244 Sum_probs=56.5
Q ss_pred CCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEe
Q 020423 194 NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLN 273 (326)
Q Consensus 194 ~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~ 273 (326)
+.|+.+.+-... +.+ ...+. .+.+++.|+|.|.++......+. . ..|+.+.++++.. ++||+.-
T Consensus 115 ~~~~~~ql~~~~-~~~---~~~~~-i~~~~~~g~~~i~l~~~~p~~~~------~----~~~~~i~~l~~~~-~~pvivK 178 (299)
T cd02809 115 PGPRWFQLYVPR-DRE---ITEDL-LRRAEAAGYKALVLTVDTPVLGR------R----LTWDDLAWLRSQW-KGPLILK 178 (299)
T ss_pred CCCeEEEEeecC-CHH---HHHHH-HHHHHHcCCCEEEEecCCCCCCC------C----CCHHHHHHHHHhc-CCCEEEe
Confidence 467777765432 222 22222 23445689999999865432110 0 2477788887664 7898876
Q ss_pred CCCCCHHHHHHHHHhCCChhhh
Q 020423 274 GGINTVDEVNAALRKGAHHVMV 295 (326)
Q Consensus 274 GgI~s~~da~~~l~~GaD~V~i 295 (326)
+ +.+.+++..+.+.|+|+|.+
T Consensus 179 ~-v~s~~~a~~a~~~G~d~I~v 199 (299)
T cd02809 179 G-ILTPEDALRAVDAGADGIVV 199 (299)
T ss_pred e-cCCHHHHHHHHHCCCCEEEE
Confidence 4 78999999999999999977
|
This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. |
| >COG1411 Uncharacterized protein related to proFAR isomerase (HisA) [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.12 E-value=0.65 Score=40.63 Aligned_cols=48 Identities=23% Similarity=0.396 Sum_probs=40.4
Q ss_pred cHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhC
Q 020423 254 KYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN 302 (326)
Q Consensus 254 ~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~d 302 (326)
+++++..+... ..-||+..|||.-.|+.+.+...|+++|.+|||+...
T Consensus 169 ~~E~l~~~~~~-s~~pVllGGGV~g~Edlel~~~~Gv~gvLvaTalh~G 216 (229)
T COG1411 169 DYELLTKVLEL-SEHPVLLGGGVGGMEDLELLLGMGVSGVLVATALHEG 216 (229)
T ss_pred CHHHHHHHHHh-ccCceeecCCcCcHHHHHHHhcCCCceeeehhhhhcC
Confidence 36777666543 3679999999999999999999999999999999764
|
|
| >TIGR00683 nanA N-acetylneuraminate lyase | Back alignment and domain information |
|---|
Probab=93.04 E-value=3.5 Score=38.38 Aligned_cols=127 Identities=10% Similarity=0.081 Sum_probs=70.5
Q ss_pred CHHHHHHHHHHHHHCC-CCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC--CCcEEEEeccCCCCCccH
Q 020423 135 NLDNLAKATELANAYN-YDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSY 211 (326)
Q Consensus 135 ~~~~f~~aA~~a~~aG-~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~--~~pv~vK~r~g~~~~~~~ 211 (326)
+.+.+.+..+++.+.| .|+|=++.. +++ +.+ -..+.-.++++.+++.+ .+||.+.+... +.
T Consensus 19 D~~~~~~~i~~~i~~G~v~gi~~~Gs--------tGE-~~~--Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~~-----~t 82 (290)
T TIGR00683 19 NEKGLRQIIRHNIDKMKVDGLYVGGS--------TGE-NFM--LSTEEKKEIFRIAKDEAKDQIALIAQVGSV-----NL 82 (290)
T ss_pred CHHHHHHHHHHHHhCCCcCEEEECCc--------ccc-ccc--CCHHHHHHHHHHHHHHhCCCCcEEEecCCC-----CH
Confidence 6788999999999999 999999753 122 111 12233333444444433 46877765432 34
Q ss_pred HHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEE------eCCCCCHHHHHHH
Q 020423 212 NQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTL------NGGINTVDEVNAA 285 (326)
Q Consensus 212 ~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa------~GgI~s~~da~~~ 285 (326)
++.++ .++..++.|+|.+.+..-.. ...+ ...-++++.++.+...++||+. .|--.+++.+.++
T Consensus 83 ~~~i~-la~~a~~~Gad~v~v~~P~y--~~~~-------~~~i~~yf~~v~~~~~~lpv~lYn~P~~tg~~l~~~~i~~L 152 (290)
T TIGR00683 83 KEAVE-LGKYATELGYDCLSAVTPFY--YKFS-------FPEIKHYYDTIIAETGGLNMIVYSIPFLTGVNMGIEQFGEL 152 (290)
T ss_pred HHHHH-HHHHHHHhCCCEEEEeCCcC--CCCC-------HHHHHHHHHHHHhhCCCCCEEEEeCccccccCcCHHHHHHH
Confidence 45555 45566889999998864221 1000 0111344555554433567652 3545566666655
Q ss_pred HH
Q 020423 286 LR 287 (326)
Q Consensus 286 l~ 287 (326)
.+
T Consensus 153 ~~ 154 (290)
T TIGR00683 153 YK 154 (290)
T ss_pred hc
Confidence 43
|
N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate. |
| >PRK02714 O-succinylbenzoate synthase; Provisional | Back alignment and domain information |
|---|
Probab=93.04 E-value=2.6 Score=39.79 Aligned_cols=123 Identities=7% Similarity=0.126 Sum_probs=70.6
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHH
Q 020423 135 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQL 214 (326)
Q Consensus 135 ~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~ 214 (326)
.+++..+.++...+.||..+-+..|- ..++.-.+.++++|+.++..+.+.+-. ...-+.++.
T Consensus 118 ~~~~~~~~a~~~~~~G~~~~KvKvG~----------------~~~~~d~~~v~air~~~g~~~~l~vDa--N~~w~~~~A 179 (320)
T PRK02714 118 AGEAALQQWQTLWQQGYRTFKWKIGV----------------DPLEQELKIFEQLLERLPAGAKLRLDA--NGGLSLEEA 179 (320)
T ss_pred CCHHHHHHHHHHHHcCCCEEEEEECC----------------CChHHHHHHHHHHHHhcCCCCEEEEEC--CCCCCHHHH
Confidence 44677778888888899999886431 123444677888888775433333222 222234444
Q ss_pred HHHHHHHhhh---CCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhC-C
Q 020423 215 CDFIYKVSSL---SPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKG-A 290 (326)
Q Consensus 215 ~~~ia~~le~---~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~G-a 290 (326)
.++ .+.+++ .++.+|. . ..++.+++.+.++.+.. ++||.+.=.+.+..++..+++.| +
T Consensus 180 ~~~-~~~l~~l~~~~i~~iE----q------------P~~~~~~~~~~~l~~~~-~~Pia~DEs~~~~~d~~~~~~~~a~ 241 (320)
T PRK02714 180 KRW-LQLCDRRLSGKIEFIE----Q------------PLPPDQFDEMLQLSQDY-QTPIALDESVANLAQLQQCYQQGWR 241 (320)
T ss_pred HHH-HHHHhhccCCCccEEE----C------------CCCcccHHHHHHHHHhC-CCCEEECCccCCHHHHHHHHHcCCC
Confidence 443 334444 4666663 0 11222355555665543 67777766777777777777754 4
Q ss_pred Chh
Q 020423 291 HHV 293 (326)
Q Consensus 291 D~V 293 (326)
|.|
T Consensus 242 d~v 244 (320)
T PRK02714 242 GIF 244 (320)
T ss_pred CEE
Confidence 444
|
|
| >PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=93.01 E-value=0.81 Score=42.68 Aligned_cols=63 Identities=13% Similarity=0.201 Sum_probs=45.7
Q ss_pred hCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcC-CCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhC
Q 020423 224 LSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF-PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN 302 (326)
Q Consensus 224 ~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~-~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~d 302 (326)
++|+|.|-+..-+ .+.+++..+.. .++.+-++||| +.+.+.++.++|+|.+.+|.....-
T Consensus 223 ~aGaDiImLDnms------------------pe~l~~av~~~~~~~~lEaSGGI-t~~ni~~yA~tGVD~IS~galthsa 283 (294)
T PRK06978 223 AHGAQSVLLDNFT------------------LDMMREAVRVTAGRAVLEVSGGV-NFDTVRAFAETGVDRISIGALTKDV 283 (294)
T ss_pred HcCCCEEEECCCC------------------HHHHHHHHHhhcCCeEEEEECCC-CHHHHHHHHhcCCCEEEeCccccCC
Confidence 5999999876432 22233333221 26789999999 8999999999999999999876665
Q ss_pred Cch
Q 020423 303 PWY 305 (326)
Q Consensus 303 P~l 305 (326)
|++
T Consensus 284 ~~l 286 (294)
T PRK06978 284 RAT 286 (294)
T ss_pred ccc
Confidence 653
|
|
| >COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=92.99 E-value=2.7 Score=39.45 Aligned_cols=127 Identities=16% Similarity=0.115 Sum_probs=76.8
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC--CCcEEEEeccCCCCCccH
Q 020423 134 SNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSY 211 (326)
Q Consensus 134 ~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~--~~pv~vK~r~g~~~~~~~ 211 (326)
-+.+.+.+.+++..+.|.|+|-++.. +|+ +.+ -..+.-.++++.+++.+ .+|+.+..... +.
T Consensus 22 vD~~a~~~lv~~li~~Gv~gi~~~Gt--------tGE-~~~--Ls~eEr~~v~~~~v~~~~grvpviaG~g~~-----~t 85 (299)
T COG0329 22 VDEEALRRLVEFLIAAGVDGLVVLGT--------TGE-SPT--LTLEERKEVLEAVVEAVGGRVPVIAGVGSN-----ST 85 (299)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECCC--------Ccc-chh--cCHHHHHHHHHHHHHHHCCCCcEEEecCCC-----cH
Confidence 36788999999999999999999753 122 111 22333445555555555 36777764432 34
Q ss_pred HHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEE-e-----CCCCCHHHHHHH
Q 020423 212 NQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTL-N-----GGINTVDEVNAA 285 (326)
Q Consensus 212 ~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa-~-----GgI~s~~da~~~ 285 (326)
+|.++ +++..++.|+|.+-+..... ... ....-++.++.+.+.. ++|||. | |--.+++.+.++
T Consensus 86 ~eai~-lak~a~~~Gad~il~v~PyY--~k~-------~~~gl~~hf~~ia~a~-~lPvilYN~P~~tg~~l~~e~i~~l 154 (299)
T COG0329 86 AEAIE-LAKHAEKLGADGILVVPPYY--NKP-------SQEGLYAHFKAIAEAV-DLPVILYNIPSRTGVDLSPETIARL 154 (299)
T ss_pred HHHHH-HHHHHHhcCCCEEEEeCCCC--cCC-------ChHHHHHHHHHHHHhc-CCCEEEEeCccccCCCCCHHHHHHH
Confidence 45555 56677899999998875321 100 0112245666666665 888654 3 444566666665
Q ss_pred HH
Q 020423 286 LR 287 (326)
Q Consensus 286 l~ 287 (326)
-+
T Consensus 155 a~ 156 (299)
T COG0329 155 AE 156 (299)
T ss_pred hc
Confidence 54
|
|
| >PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=92.98 E-value=0.47 Score=42.00 Aligned_cols=70 Identities=11% Similarity=0.086 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCC
Q 020423 211 YNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGA 290 (326)
Q Consensus 211 ~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~Ga 290 (326)
.++..+ +++.+-+.|+..+.+.-++. ...+.+.++.+++++--+|++|.|.+.+++..+++.||
T Consensus 21 ~~~~~~-~~~a~~~gGi~~iEvt~~~~---------------~~~~~i~~l~~~~~~~~~iGaGTV~~~~~~~~a~~aGA 84 (206)
T PRK09140 21 PDEALA-HVGALIEAGFRAIEIPLNSP---------------DPFDSIAALVKALGDRALIGAGTVLSPEQVDRLADAGG 84 (206)
T ss_pred HHHHHH-HHHHHHHCCCCEEEEeCCCc---------------cHHHHHHHHHHHcCCCcEEeEEecCCHHHHHHHHHcCC
Confidence 334444 34455579999999874331 12567778887775434799999999999999999999
Q ss_pred Chhhhh
Q 020423 291 HHVMVG 296 (326)
Q Consensus 291 D~V~iG 296 (326)
|++..+
T Consensus 85 ~fivsp 90 (206)
T PRK09140 85 RLIVTP 90 (206)
T ss_pred CEEECC
Confidence 999885
|
|
| >cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid) | Back alignment and domain information |
|---|
Probab=92.97 E-value=4.1 Score=37.82 Aligned_cols=127 Identities=11% Similarity=0.027 Sum_probs=72.9
Q ss_pred CHHHHHHHHHHHHHC-CCCEEEecCCCCCCcccCCCCcccc--ccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccH
Q 020423 135 NLDNLAKATELANAY-NYDEINLNCGCPSPKVAGHGCFGVS--LMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSY 211 (326)
Q Consensus 135 ~~~~f~~aA~~a~~a-G~d~Iein~g~P~~~~~r~d~yGgs--l~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~ 211 (326)
+.+.+.+.++++.+. |.++|-++.. ++++ -+ .+.|.+++..+++++.. .+|+.+.+.. .++
T Consensus 19 D~~~~~~~i~~l~~~~Gv~gi~~~Gs--------tGE~-~~Lt~~Er~~~~~~~~~~~~~--~~~viagv~~-----~~~ 82 (288)
T cd00954 19 NEDVLRAIVDYLIEKQGVDGLYVNGS--------TGEG-FLLSVEERKQIAEIVAEAAKG--KVTLIAHVGS-----LNL 82 (288)
T ss_pred CHHHHHHHHHHHHhcCCCCEEEECcC--------CcCc-ccCCHHHHHHHHHHHHHHhCC--CCeEEeccCC-----CCH
Confidence 678899999999999 9999998753 2331 11 11233344444443322 3677775433 234
Q ss_pred HHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEE------eCCCCCHHHHHHH
Q 020423 212 NQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTL------NGGINTVDEVNAA 285 (326)
Q Consensus 212 ~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa------~GgI~s~~da~~~ 285 (326)
++.++ .++..++.|+|.+-+...... ..+ ...-++++.++.+..+++||+. .|---+++.+.++
T Consensus 83 ~~ai~-~a~~a~~~Gad~v~~~~P~y~--~~~-------~~~i~~~~~~v~~a~~~lpi~iYn~P~~tg~~l~~~~~~~L 152 (288)
T cd00954 83 KESQE-LAKHAEELGYDAISAITPFYY--KFS-------FEEIKDYYREIIAAAASLPMIIYHIPALTGVNLTLEQFLEL 152 (288)
T ss_pred HHHHH-HHHHHHHcCCCEEEEeCCCCC--CCC-------HHHHHHHHHHHHHhcCCCCEEEEeCccccCCCCCHHHHHHH
Confidence 45555 455668899999987643211 000 0112455666665543788763 3545577777666
Q ss_pred HH
Q 020423 286 LR 287 (326)
Q Consensus 286 l~ 287 (326)
.+
T Consensus 153 ~~ 154 (288)
T cd00954 153 FE 154 (288)
T ss_pred hc
Confidence 54
|
It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases. |
| >PRK06256 biotin synthase; Validated | Back alignment and domain information |
|---|
Probab=92.94 E-value=1.3 Score=42.06 Aligned_cols=148 Identities=18% Similarity=0.145 Sum_probs=76.4
Q ss_pred HHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHHH
Q 020423 141 KATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYK 220 (326)
Q Consensus 141 ~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia~ 220 (326)
+.++.++++|++.+.+++-+ +...... ... ....+...+.++.+++ .|+++..-+-+|. .++.++..+.+ .
T Consensus 153 e~l~~LkeaG~~~v~~~lEt-s~~~~~~--i~~--~~t~~~~i~~i~~a~~-~Gi~v~~~~I~Gl--gEt~ed~~~~~-~ 223 (336)
T PRK06256 153 EQAERLKEAGVDRYNHNLET-SRSYFPN--VVT--THTYEDRIDTCEMVKA-AGIEPCSGGIIGM--GESLEDRVEHA-F 223 (336)
T ss_pred HHHHHHHHhCCCEEecCCcc-CHHHHhh--cCC--CCCHHHHHHHHHHHHH-cCCeeccCeEEeC--CCCHHHHHHHH-H
Confidence 45567899999999887765 3221111 110 0234445555555544 3666554444443 23455555533 3
Q ss_pred HhhhCCccEEEEecCCcccCCCCcCCcCCCCCc-cHHHHH--HHHh-cCCCceEEEeCCC-CCHHH-HHHHHHhCCChhh
Q 020423 221 VSSLSPTRHFIIHSRKALLNGISPAENRTIPPL-KYEYYY--ALLR-DFPDLTFTLNGGI-NTVDE-VNAALRKGAHHVM 294 (326)
Q Consensus 221 ~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~-~~~~i~--~i~~-~~~~iPVIa~GgI-~s~~d-a~~~l~~GaD~V~ 294 (326)
.+.+.+++.+.++.-.+.. |.. .. ..++. ..+.++ .+.+ -.++..|..+||= ....+ ....+ .||++++
T Consensus 224 ~l~~l~~~~v~i~~l~P~p-GT~-l~--~~~~~~~~e~l~~ia~~Rl~~p~~~I~~~~gr~~~~~~~~~~~~-~g~~~~~ 298 (336)
T PRK06256 224 FLKELDADSIPINFLNPIP-GTP-LE--NHPELTPLECLKTIAIFRLINPDKEIRIAGGREVNLRSLQPLGL-GGANSVI 298 (336)
T ss_pred HHHhCCCCEEeecccccCC-CCC-CC--CCCCCCHHHHHHHHHHHHHHCCCCeeEecCchhhhchhhHHHHh-ccCceee
Confidence 4567899998887433211 110 00 01111 122221 2222 3467788677663 23333 33444 6999999
Q ss_pred hhHHHHhC
Q 020423 295 VGRAAYQN 302 (326)
Q Consensus 295 iGRall~d 302 (326)
+|=-|-..
T Consensus 299 ~g~~lt~~ 306 (336)
T PRK06256 299 VGNYLTTV 306 (336)
T ss_pred ECCcccCC
Confidence 99765443
|
|
| >PF02548 Pantoate_transf: Ketopantoate hydroxymethyltransferase; InterPro: IPR003700 The panB gene from Escherichia coli encodes the first enzyme of the pantothenate biosynthesis pathway, ketopantoate hydroxymethyltransferase (KPHMT) 2 | Back alignment and domain information |
|---|
Probab=92.93 E-value=1.8 Score=39.73 Aligned_cols=120 Identities=10% Similarity=0.006 Sum_probs=69.4
Q ss_pred EEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCc-EEEEeccCC
Q 020423 127 IVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVP-VSVKCRIGV 205 (326)
Q Consensus 127 iivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~p-v~vK~r~g~ 205 (326)
-+..|...+. ..|+.+.++|.|.|=+-= ...++. -+|...+.-..+....-.++||+..+.+ +.+-+..+.
T Consensus 17 ki~~lTaYD~----~~A~~~d~agvD~iLVGD--Slgmv~--~G~~sT~~vtld~mi~h~~aV~Rga~~~~vv~DmPf~s 88 (261)
T PF02548_consen 17 KIVMLTAYDY----PSARIADEAGVDIILVGD--SLGMVV--LGYDSTLPVTLDEMIYHTKAVRRGAPNAFVVADMPFGS 88 (261)
T ss_dssp -EEEEE--SH----HHHHHHHHTT-SEEEE-T--THHHHT--T--SSSTT--HHHHHHHHHHHHHH-TSSEEEEE--TTS
T ss_pred cEEEEecccH----HHHHHHHHcCCCEEEeCC--cHHHhe--eCCCCCcCcCHHHHHHHHHHHHhcCCCceEEecCCccc
Confidence 3457777663 577889999999988731 111111 1234444456778888889998877555 445666664
Q ss_pred CCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEe
Q 020423 206 DDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLN 273 (326)
Q Consensus 206 ~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~ 273 (326)
.. .+.++.++...++++++|+|.+-+.|+.. ..+.++.+.+. .|||++-
T Consensus 89 y~-~s~e~av~nA~rl~ke~GadaVKlEGg~~----------------~~~~i~~l~~~--GIPV~gH 137 (261)
T PF02548_consen 89 YQ-ASPEQAVRNAGRLMKEAGADAVKLEGGAE----------------IAETIKALVDA--GIPVMGH 137 (261)
T ss_dssp ST-SSHHHHHHHHHHHHHTTT-SEEEEEBSGG----------------GHHHHHHHHHT--T--EEEE
T ss_pred cc-CCHHHHHHHHHHHHHhcCCCEEEeccchh----------------HHHHHHHHHHC--CCcEEEE
Confidence 43 34566666667777789999999987531 14566777655 8999984
|
1.2.11 from EC. Fungal ketopantoate hydroxymethyltransferase is essential for the biosynthesis of coenzyme A, while the pathway intermediate 4'-phosphopantetheine is required for penicillin production [].; GO: 0003864 3-methyl-2-oxobutanoate hydroxymethyltransferase activity, 0015940 pantothenate biosynthetic process; PDB: 3VAV_G 1M3U_A 3EZ4_J 1O68_C 1O66_A 1OY0_D. |
| >PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=92.92 E-value=0.84 Score=42.37 Aligned_cols=92 Identities=15% Similarity=0.156 Sum_probs=56.9
Q ss_pred HHHHHHHHHhcCC--CcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHH
Q 020423 182 VGEAMSVIAANTN--VPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYY 259 (326)
Q Consensus 182 l~eiv~avr~~~~--~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~ 259 (326)
+.+.++.+|+..+ .++.|- .++.++..+ .+ ++|+|.|-+..-+ .+.++
T Consensus 179 i~~av~~~r~~~~~~~kIeVE-------v~slee~~e----a~-~~gaDiImLDn~s------------------~e~l~ 228 (281)
T PRK06543 179 LTEALRHVRAQLGHTTHVEVE-------VDRLDQIEP----VL-AAGVDTIMLDNFS------------------LDDLR 228 (281)
T ss_pred HHHHHHHHHHhCCCCCcEEEE-------eCCHHHHHH----HH-hcCCCEEEECCCC------------------HHHHH
Confidence 3455555565543 233332 234555433 22 5899999876422 22222
Q ss_pred HHHhcC-CCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhCCc
Q 020423 260 ALLRDF-PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW 304 (326)
Q Consensus 260 ~i~~~~-~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~dP~ 304 (326)
+..+.. ....+.++||| +.+.+.++.++|+|.+.+|.....-|+
T Consensus 229 ~av~~~~~~~~leaSGgI-~~~ni~~yA~tGVD~Is~galths~~~ 273 (281)
T PRK06543 229 EGVELVDGRAIVEASGNV-NLNTVGAIASTGVDVISVGALTHSVRA 273 (281)
T ss_pred HHHHHhCCCeEEEEECCC-CHHHHHHHHhcCCCEEEeCccccCCcc
Confidence 222211 14589999999 899999999999999999986555454
|
|
| >PRK06096 molybdenum transport protein ModD; Provisional | Back alignment and domain information |
|---|
Probab=92.88 E-value=0.93 Score=42.17 Aligned_cols=92 Identities=13% Similarity=0.170 Sum_probs=56.4
Q ss_pred HHHHHHHHHhcCC-CcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHH
Q 020423 182 VGEAMSVIAANTN-VPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYA 260 (326)
Q Consensus 182 l~eiv~avr~~~~-~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~ 260 (326)
+.+.++.+|+..+ ..+.|-+ ++.++..+ .+ ++|+|.|-+...+ |.......+
T Consensus 176 i~~av~~~r~~~~~~kIeVEv-------~tleqa~e----a~-~agaDiI~LDn~~---------------~e~l~~av~ 228 (284)
T PRK06096 176 WSGAINQLRRHAPEKKIVVEA-------DTPKEAIA----AL-RAQPDVLQLDKFS---------------PQQATEIAQ 228 (284)
T ss_pred HHHHHHHHHHhCCCCCEEEEC-------CCHHHHHH----HH-HcCCCEEEECCCC---------------HHHHHHHHH
Confidence 3456666666542 3344422 34555433 33 5899999875322 111222222
Q ss_pred HHh-cCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHh
Q 020423 261 LLR-DFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 301 (326)
Q Consensus 261 i~~-~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~ 301 (326)
+.+ ..+++.+-++||| +++.+.++.+.|+|.+.+|....+
T Consensus 229 ~~~~~~~~~~leaSGGI-~~~ni~~yA~tGvD~Is~gal~~a 269 (284)
T PRK06096 229 IAPSLAPHCTLSLAGGI-NLNTLKNYADCGIRLFITSAPYYA 269 (284)
T ss_pred HhhccCCCeEEEEECCC-CHHHHHHHHhcCCCEEEECccccC
Confidence 222 2357889999999 899999999999999988865333
|
|
| >PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed | Back alignment and domain information |
|---|
Probab=92.87 E-value=3.6 Score=39.64 Aligned_cols=115 Identities=17% Similarity=0.112 Sum_probs=65.4
Q ss_pred cccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCcc-EEEEecCCcccCCCCcCCcCCC
Q 020423 172 GVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTR-HFIIHSRKALLNGISPAENRTI 250 (326)
Q Consensus 172 Ggsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd-~I~v~~~~~~~~g~~~~~~~~~ 250 (326)
|+..+++..+ ++++ ...+.||.+|-... .+++|+...+..+ ...|.+ .+.+|-+...+.. ...
T Consensus 208 ~s~~~~n~~L----L~~~-a~~gkPVilk~G~~----~t~~e~~~Ave~i-~~~Gn~~i~L~erg~s~yp~------~~~ 271 (360)
T PRK12595 208 GARNMQNFEL----LKAA-GRVNKPVLLKRGLS----ATIEEFIYAAEYI-MSQGNGQIILCERGIRTYEK------ATR 271 (360)
T ss_pred CcccccCHHH----HHHH-HccCCcEEEeCCCC----CCHHHHHHHHHHH-HHCCCCCEEEECCccCCCCC------CCC
Confidence 3344455444 4444 34589999984432 2455665544443 456774 5555522322210 111
Q ss_pred CCccHHHHHHHHhcCCCceEEEeCCCCCH------HHHHHHHHhCCChhhhhHHHHhCCch
Q 020423 251 PPLKYEYYYALLRDFPDLTFTLNGGINTV------DEVNAALRKGAHHVMVGRAAYQNPWY 305 (326)
Q Consensus 251 ~~~~~~~i~~i~~~~~~iPVIa~GgI~s~------~da~~~l~~GaD~V~iGRall~dP~l 305 (326)
...++..+..+++.+ ++||+..-+-..+ .-+..++..|||++++=+-+ ||+.
T Consensus 272 ~~ldl~~i~~lk~~~-~~PV~~d~~Hs~G~r~~~~~~a~aAva~GAdg~~iE~H~--dp~~ 329 (360)
T PRK12595 272 NTLDISAVPILKQET-HLPVMVDVTHSTGRRDLLLPTAKAALAIGADGVMAEVHP--DPAV 329 (360)
T ss_pred CCcCHHHHHHHHHHh-CCCEEEeCCCCCcchhhHHHHHHHHHHcCCCeEEEEecC--CCCC
Confidence 234677787777665 8999994333222 24455677999999988776 6664
|
|
| >PF04476 DUF556: Protein of unknown function (DUF556); InterPro: IPR007565 The proteins in this entry are functionally uncharacterised | Back alignment and domain information |
|---|
Probab=92.82 E-value=2.4 Score=38.15 Aligned_cols=131 Identities=20% Similarity=0.147 Sum_probs=68.3
Q ss_pred HHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHHHH
Q 020423 142 ATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKV 221 (326)
Q Consensus 142 aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia~~ 221 (326)
-|..+.+.|+|-|++. +...|.-|+ +.+..+.+|++.+.. ..|++.-+.--..+..++. . .+.-
T Consensus 12 EA~~a~~~gaDiID~K-------~P~~GaLGA---~~~~vi~~i~~~~~~--~~pvSAtiGDlp~~p~~~~---~-aa~~ 75 (235)
T PF04476_consen 12 EAEEALAGGADIIDLK-------NPAEGALGA---LFPWVIREIVAAVPG--RKPVSATIGDLPMKPGTAS---L-AALG 75 (235)
T ss_pred HHHHHHhCCCCEEEcc-------CCCCCCCCC---CCHHHHHHHHHHcCC--CCceEEEecCCCCCchHHH---H-HHHH
Confidence 4566778899999994 333466664 456777777665432 3677765432222222221 1 1111
Q ss_pred hhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHH---HhcC-CCceEEEeCCCC-------CHHHHHHHH-HhC
Q 020423 222 SSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYAL---LRDF-PDLTFTLNGGIN-------TVDEVNAAL-RKG 289 (326)
Q Consensus 222 le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i---~~~~-~~iPVIa~GgI~-------s~~da~~~l-~~G 289 (326)
....|+|||-|--- +... .....+.+..+ .+.. .+..||+++--. ++.++.+.. +.|
T Consensus 76 ~a~~GvdyvKvGl~-----g~~~------~~~a~e~l~~v~~av~~~~~~~~vVAv~yAD~~r~~~~~p~~l~~~a~~aG 144 (235)
T PF04476_consen 76 AAATGVDYVKVGLF-----GCKD------YDEAIEALEAVVRAVKDFDPDKKVVAVGYADAQRVGSISPLDLPEIAAEAG 144 (235)
T ss_pred HHhcCCCEEEEecC-----CCCC------HHHHHHHHHHHHHHHhhhCCCcEEEEEEecchhhhcCCCHHHHHHHHHHcC
Confidence 22479999987321 0000 00112323222 2222 245677775322 344555554 589
Q ss_pred CChhhhhHHH
Q 020423 290 AHHVMVGRAA 299 (326)
Q Consensus 290 aD~V~iGRal 299 (326)
++++|+=|+.
T Consensus 145 ~~gvMlDTa~ 154 (235)
T PF04476_consen 145 FDGVMLDTAD 154 (235)
T ss_pred CCEEEEeccc
Confidence 9999996654
|
|
| >PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=92.72 E-value=0.3 Score=45.45 Aligned_cols=93 Identities=9% Similarity=0.039 Sum_probs=57.1
Q ss_pred HHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHH
Q 020423 183 GEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALL 262 (326)
Q Consensus 183 ~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~ 262 (326)
.+.++.+|+..+ ...|+-. +.++.++..+ .+ ++|+|.|-+..-+ .+.+++..
T Consensus 184 ~~av~~~r~~~~--~~~kIeV---Ev~tleea~~----a~-~agaDiImLDnms------------------pe~l~~av 235 (290)
T PRK06559 184 QKAIAQARAYAP--FVKMVEV---EVESLAAAEE----AA-AAGADIIMLDNMS------------------LEQIEQAI 235 (290)
T ss_pred HHHHHHHHHhCC--CCCeEEE---ECCCHHHHHH----HH-HcCCCEEEECCCC------------------HHHHHHHH
Confidence 345555555543 2223332 1234555433 33 5899999876422 22233332
Q ss_pred hcC-CCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhCCc
Q 020423 263 RDF-PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW 304 (326)
Q Consensus 263 ~~~-~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~dP~ 304 (326)
+.. .++.+-++||| +.+.+.++.++|+|.+.+|.....-|+
T Consensus 236 ~~~~~~~~leaSGGI-~~~ni~~yA~tGVD~Is~galthsa~~ 277 (290)
T PRK06559 236 TLIAGRSRIECSGNI-DMTTISRFRGLAIDYVSSGSLTHSAKS 277 (290)
T ss_pred HHhcCceEEEEECCC-CHHHHHHHHhcCCCEEEeCccccCCcc
Confidence 221 26789999999 899999999999999999986653444
|
|
| >PF04309 G3P_antiterm: Glycerol-3-phosphate responsive antiterminator; InterPro: IPR006699 Glycerol enters bacterial cells via facilitated diffusion, an energy-independent transport process catalysed by the glycerol transport facilitator GlpF, an integral membrane protein of the aquaporin family | Back alignment and domain information |
|---|
Probab=92.71 E-value=0.071 Score=45.90 Aligned_cols=61 Identities=20% Similarity=0.187 Sum_probs=39.8
Q ss_pred HHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHH
Q 020423 220 KVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRA 298 (326)
Q Consensus 220 ~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRa 298 (326)
+.+++...|++.+-.+. ....+.++.++ .++|||+.|=|.+.+++.++++.||++|.-...
T Consensus 111 ~~i~~~~PD~vEilPg~-----------------~p~vi~~i~~~-~~~PiIAGGLI~~~e~v~~al~aGa~aVSTS~~ 171 (175)
T PF04309_consen 111 KQIEQSKPDAVEILPGV-----------------MPKVIKKIREE-TNIPIIAGGLIRTKEDVEEALKAGADAVSTSNK 171 (175)
T ss_dssp HHHHHHT-SEEEEESCC-----------------HHHHHCCCCCC-CSS-EEEESS--SHHHHHHHCCTTCEEEEE--H
T ss_pred HHHhhcCCCEEEEchHH-----------------HHHHHHHHHHh-cCCCEEeecccCCHHHHHHHHHcCCEEEEcCCh
Confidence 34566789999876431 02233333333 489999999999999999999999999987654
|
Intracellular glycerol is usually converted to glycerol-3-P in an ATP-requiring phosphorylation reaction catalysed by glycerol kinase (GlpK). Glycerol-3-P, the inducer of the glpFK operon, is not a substrate for GlpF and hence remains entrapped in the cell where it is metabolized further. In some bacterial species, for example Bacillus firmus, glycerol-3-P activates the antiterminator GlpP []. In B. subtilis, glpF and glpK are organised in an operon followed by the glycerol-3-P dehydrogenase-encoding glpD gene and preceded by glpP coding for an antiterminator regulating the expression of glpFK, glpD and glpTQ. Their induction requires the inducer glycerol-3-P, which activates the antiterminator GlpP by allowing it to bind to the leader region of glpD and presumably also of glpFK and glpTQ mRNAs.; GO: 0006355 regulation of transcription, DNA-dependent, 0009607 response to biotic stimulus; PDB: 1VKF_A 3KTS_G. |
| >TIGR00674 dapA dihydrodipicolinate synthase | Back alignment and domain information |
|---|
Probab=92.65 E-value=3.7 Score=38.01 Aligned_cols=127 Identities=15% Similarity=0.133 Sum_probs=72.0
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCc-cccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHH
Q 020423 135 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCF-GVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQ 213 (326)
Q Consensus 135 ~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~y-Ggsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e 213 (326)
+.+.+.+..+++.+.|.|+|=++... +++ --+.+.|.+++..+++.+.. ..||.+.+.. .+.++
T Consensus 17 D~~~~~~~i~~l~~~Gv~Gi~~~Gst--------GE~~~Ls~~Er~~~~~~~~~~~~~--~~~vi~gv~~-----~s~~~ 81 (285)
T TIGR00674 17 DFAALEKLIDFQIENGTDAIVVVGTT--------GESPTLSHEEHKKVIEFVVDLVNG--RVPVIAGTGS-----NATEE 81 (285)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECccC--------cccccCCHHHHHHHHHHHHHHhCC--CCeEEEeCCC-----ccHHH
Confidence 67889999999999999999986421 221 11112334444444444322 3677776433 23455
Q ss_pred HHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEE------eCCCCCHHHHHHHHH
Q 020423 214 LCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTL------NGGINTVDEVNAALR 287 (326)
Q Consensus 214 ~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa------~GgI~s~~da~~~l~ 287 (326)
.++ .++..++.|+|.+.+...... ..+ ...-++++.++.+.. ++||+. .|--.+++.+.++.+
T Consensus 82 ~i~-~a~~a~~~Gad~v~v~pP~y~--~~~-------~~~i~~~~~~i~~~~-~~pi~lYn~P~~tg~~l~~~~l~~L~~ 150 (285)
T TIGR00674 82 AIS-LTKFAEDVGADGFLVVTPYYN--KPT-------QEGLYQHFKAIAEEV-DLPIILYNVPSRTGVSLYPETVKRLAE 150 (285)
T ss_pred HHH-HHHHHHHcCCCEEEEcCCcCC--CCC-------HHHHHHHHHHHHhcC-CCCEEEEECcHHhcCCCCHHHHHHHHc
Confidence 555 456678899999998753211 000 011134555555554 777763 354556666666654
|
Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment. |
| >cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain | Back alignment and domain information |
|---|
Probab=92.62 E-value=1.3 Score=42.32 Aligned_cols=42 Identities=21% Similarity=0.361 Sum_probs=35.1
Q ss_pred ccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhh
Q 020423 253 LKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVG 296 (326)
Q Consensus 253 ~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iG 296 (326)
..|+.+..+++.. ++|||.- ||.+++++..+.+.|+|+|.+.
T Consensus 200 ~~~~~i~~l~~~~-~~PvivK-gv~~~~dA~~a~~~G~d~I~vs 241 (344)
T cd02922 200 LTWDDIKWLRKHT-KLPIVLK-GVQTVEDAVLAAEYGVDGIVLS 241 (344)
T ss_pred CCHHHHHHHHHhc-CCcEEEE-cCCCHHHHHHHHHcCCCEEEEE
Confidence 4588888887665 8998877 6789999999999999998854
|
FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit. |
| >cd08210 RLP_RrRLP Ribulose bisphosphate carboxylase like proteins (RLPs) similar to R | Back alignment and domain information |
|---|
Probab=92.60 E-value=5.6 Score=38.41 Aligned_cols=98 Identities=14% Similarity=0.029 Sum_probs=64.3
Q ss_pred CCCcEEEEec---CCCHHHHHHHHHHHHHCCCCEEEec--CCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcE
Q 020423 123 EQHPIVLQIG---GSNLDNLAKATELANAYNYDEINLN--CGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPV 197 (326)
Q Consensus 123 ~~~piivQL~---g~~~~~f~~aA~~a~~aG~d~Iein--~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv 197 (326)
.++|++..+. |-+++++++.+..+...|.|.|-.. .+.+. =..++.|.+.+.+.+++..+.+|...
T Consensus 124 ~~rPl~~tiiKP~GL~~~~~a~~~~~~~~gGvD~IKdDe~l~~~~---------~~p~~eRv~~v~~av~~a~~eTG~~~ 194 (364)
T cd08210 124 PERPLLCSALKPQGLSAAELAELAYAFALGGIDIIKDDHGLADQP---------FAPFEERVKACQEAVAEANAETGGRT 194 (364)
T ss_pred CCCceEEEEeccccCCHHHHHHHHHHHHhcCCCeeecCccccCcc---------CCCHHHHHHHHHHHHHHHHhhcCCcc
Confidence 5778776654 6789999999999999999999443 22221 12234678888888888887776543
Q ss_pred EEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEec
Q 020423 198 SVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHS 234 (326)
Q Consensus 198 ~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~ 234 (326)
.+=..+. . ..+|+.+. ++..+++|++.+-+..
T Consensus 195 ~y~~Nit--a--~~~em~~r-a~~a~~~Ga~~vMv~~ 226 (364)
T cd08210 195 LYAPNVT--G--PPTQLLER-ARFAKEAGAGGVLIAP 226 (364)
T ss_pred eEEEecC--C--CHHHHHHH-HHHHHHcCCCEEEeec
Confidence 3322332 1 13355553 4455679999988764
|
rubrum RLP. RLP from Rhodospirillum rubrum plays a role in an uncharacterized sulfur salvage pathway and has been shown to catalyze a novel isomerization reaction that converts 5-methylthio-d-ribulose 1-phosphate to a 3:1 mixture of 1-methylthioxylulose 5-phosphate and 1-methylthioribulose 5-phosphate. |
| >PRK05265 pyridoxine 5'-phosphate synthase; Provisional | Back alignment and domain information |
|---|
Probab=92.49 E-value=1.5 Score=39.61 Aligned_cols=149 Identities=13% Similarity=0.102 Sum_probs=90.5
Q ss_pred HHHHHHHHHHHHHCCCCEEEecCC----------------------------------------------CCCCcccCCC
Q 020423 136 LDNLAKATELANAYNYDEINLNCG----------------------------------------------CPSPKVAGHG 169 (326)
Q Consensus 136 ~~~f~~aA~~a~~aG~d~Iein~g----------------------------------------------~P~~~~~r~d 169 (326)
..+..++|..+.++|+|+|.+|.- -|......+-
T Consensus 23 ~Pd~v~aA~~a~~aGAdgITvHlReDrRHI~d~Dv~~L~~~~~~~lNlE~a~~~em~~ia~~~kP~~vtLVPE~r~E~TT 102 (239)
T PRK05265 23 YPDPVRAALIAEQAGADGITVHLREDRRHIRDRDVRLLRETLKTELNLEMAATEEMLDIALEVKPHQVTLVPEKREELTT 102 (239)
T ss_pred CCCHHHHHHHHHHcCCCEEEecCCCCcccCCHHHHHHHHHhcCCCEEeccCCCHHHHHHHHHCCCCEEEECCCCCCCccC
Confidence 345778999999999999999742 1222212222
Q ss_pred CccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCC
Q 020423 170 CFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRT 249 (326)
Q Consensus 170 ~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~ 249 (326)
+=|-++..+.+.+.++++.+++ .|+.+++-+-+ +.+++ + ...+.|+|.|.+|.+..... ....
T Consensus 103 egGldv~~~~~~l~~~i~~L~~-~gIrVSLFidP------~~~qi-~----~A~~~GAd~VELhTG~yA~a-~~~~---- 165 (239)
T PRK05265 103 EGGLDVAGQFDKLKPAIARLKD-AGIRVSLFIDP------DPEQI-E----AAAEVGADRIELHTGPYADA-KTEA---- 165 (239)
T ss_pred CccchhhcCHHHHHHHHHHHHH-CCCEEEEEeCC------CHHHH-H----HHHHhCcCEEEEechhhhcC-CCcc----
Confidence 3266777888999999999955 47777776533 12221 2 23468999999997643111 0000
Q ss_pred CCCccHHHHHHH---HhcCCCceEEEeCCCCCHHHHHHHHH-hCCChhhhhHHHHhCCc
Q 020423 250 IPPLKYEYYYAL---LRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQNPW 304 (326)
Q Consensus 250 ~~~~~~~~i~~i---~~~~~~iPVIa~GgI~s~~da~~~l~-~GaD~V~iGRall~dP~ 304 (326)
...-++.+... ..+ ..+-|=+..|+ +.+.+..+.. -+.+=|.||.+++++--
T Consensus 166 -~~~el~~~~~aa~~a~~-lGL~VnAGHgL-ny~Nv~~i~~ip~i~EvnIGHsiia~Al 221 (239)
T PRK05265 166 -EAAELERIAKAAKLAAS-LGLGVNAGHGL-NYHNVKPIAAIPGIEELNIGHAIIARAL 221 (239)
T ss_pred -hHHHHHHHHHHHHHHHH-cCCEEecCCCC-CHHhHHHHhhCCCCeEEccCHHHHHHHH
Confidence 00012222222 222 25666666676 6777776655 57888999999887654
|
|
| >PRK03170 dihydrodipicolinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=92.40 E-value=4.9 Score=37.28 Aligned_cols=127 Identities=14% Similarity=0.118 Sum_probs=71.7
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCc-cccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHH
Q 020423 135 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCF-GVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQ 213 (326)
Q Consensus 135 ~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~y-Ggsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e 213 (326)
+.+.+.+..+++.+.|.+++=++... +++ --+.+.|.+++..+++.+.. +.|+.+.+.. .++++
T Consensus 20 D~~~l~~~i~~l~~~Gv~gi~~~Gs~--------GE~~~ls~~Er~~~~~~~~~~~~~--~~~vi~gv~~-----~~~~~ 84 (292)
T PRK03170 20 DFAALRKLVDYLIANGTDGLVVVGTT--------GESPTLTHEEHEELIRAVVEAVNG--RVPVIAGTGS-----NSTAE 84 (292)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCcC--------CccccCCHHHHHHHHHHHHHHhCC--CCcEEeecCC-----chHHH
Confidence 67889999999999999999997531 221 11122334444444444321 3677765433 23445
Q ss_pred HHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEE------eCCCCCHHHHHHHHH
Q 020423 214 LCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTL------NGGINTVDEVNAALR 287 (326)
Q Consensus 214 ~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa------~GgI~s~~da~~~l~ 287 (326)
.++ .++..++.|+|.+.+..... ...+ ...-.+++.++.+.. ++||+. .|---+++.+.++.+
T Consensus 85 ~i~-~a~~a~~~G~d~v~~~pP~~--~~~~-------~~~i~~~~~~ia~~~-~~pv~lYn~P~~~g~~l~~~~~~~L~~ 153 (292)
T PRK03170 85 AIE-LTKFAEKAGADGALVVTPYY--NKPT-------QEGLYQHFKAIAEAT-DLPIILYNVPGRTGVDILPETVARLAE 153 (292)
T ss_pred HHH-HHHHHHHcCCCEEEECCCcC--CCCC-------HHHHHHHHHHHHhcC-CCCEEEEECccccCCCCCHHHHHHHHc
Confidence 555 45667889999999864321 0000 011144555565543 677663 354556666666643
|
|
| >PLN02334 ribulose-phosphate 3-epimerase | Back alignment and domain information |
|---|
Probab=92.38 E-value=5.3 Score=35.70 Aligned_cols=91 Identities=13% Similarity=0.141 Sum_probs=56.8
Q ss_pred CCcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEecc
Q 020423 124 QHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRI 203 (326)
Q Consensus 124 ~~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~ 203 (326)
...+..++...+...+.+..+.+.+.|.+.|.+..-. +.|- .+..+=-++++++++.++.++.+-+-.
T Consensus 7 ~~~i~~s~~~~~~~~l~~~l~~~~~~g~~~ihld~~d--------~~f~----~~~~~g~~~~~~l~~~~~~~~~vhlmv 74 (229)
T PLN02334 7 DAIIAPSILSADFANLAEEAKRVLDAGADWLHVDVMD--------GHFV----PNLTIGPPVVKALRKHTDAPLDCHLMV 74 (229)
T ss_pred CceEEeehhhcCHHHHHHHHHHHHHcCCCEEEEeccc--------CCcC----CccccCHHHHHHHHhcCCCcEEEEecc
Confidence 3446677777777889999999999999999985311 1111 122222256777777676676665444
Q ss_pred CCCCCccHHHHHHHHHHHhhhCCccEEEEecC
Q 020423 204 GVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSR 235 (326)
Q Consensus 204 g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~ 235 (326)
. + ..+..+ . +.+.|+|++++|..
T Consensus 75 ~--~---p~d~~~---~-~~~~gad~v~vH~~ 97 (229)
T PLN02334 75 T--N---PEDYVP---D-FAKAGASIFTFHIE 97 (229)
T ss_pred C--C---HHHHHH---H-HHHcCCCEEEEeec
Confidence 2 2 122222 2 23589999999976
|
|
| >PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF | Back alignment and domain information |
|---|
Probab=92.28 E-value=1.8 Score=38.17 Aligned_cols=123 Identities=11% Similarity=0.156 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHH
Q 020423 137 DNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 216 (326)
Q Consensus 137 ~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~ 216 (326)
+.+.+-.+.++++|+|++-+-+-.+. +. -+.+.+.+++++.+ +.|+++--.+ |...+..+.+
T Consensus 72 ~~M~~dI~~~~~~GadG~VfG~L~~d------g~------iD~~~~~~Li~~a~---~~~~tFHRAf--D~~~d~~~al- 133 (201)
T PF03932_consen 72 EIMKEDIRMLRELGADGFVFGALTED------GE------IDEEALEELIEAAG---GMPVTFHRAF--DEVPDPEEAL- 133 (201)
T ss_dssp HHHHHHHHHHHHTT-SEEEE--BETT------SS------B-HHHHHHHHHHHT---TSEEEE-GGG--GGSSTHHHHH-
T ss_pred HHHHHHHHHHHHcCCCeeEEEeECCC------CC------cCHHHHHHHHHhcC---CCeEEEeCcH--HHhCCHHHHH-
Confidence 44556677889999999998543222 11 35677777777753 5677664333 3333333333
Q ss_pred HHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcC-CCceEEEeCCCCCHHHHHHHHH-hCCChh
Q 020423 217 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF-PDLTFTLNGGINTVDEVNAALR-KGAHHV 293 (326)
Q Consensus 217 ~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~-~~iPVIa~GgI~s~~da~~~l~-~GaD~V 293 (326)
..+ .+.|++.|--||+... -....+.++++.+.. .++-|+..||| +.+.+.++++ +|+.-+
T Consensus 134 --~~L-~~lG~~rVLTSGg~~~------------a~~g~~~L~~lv~~a~~~i~Im~GgGv-~~~nv~~l~~~tg~~~~ 196 (201)
T PF03932_consen 134 --EQL-IELGFDRVLTSGGAPT------------ALEGIENLKELVEQAKGRIEIMPGGGV-RAENVPELVEETGVREI 196 (201)
T ss_dssp --HHH-HHHT-SEEEESTTSSS------------TTTCHHHHHHHHHHHTTSSEEEEESS---TTTHHHHHHHHT-SEE
T ss_pred --HHH-HhcCCCEEECCCCCCC------------HHHHHHHHHHHHHHcCCCcEEEecCCC-CHHHHHHHHHhhCCeEE
Confidence 333 3469999977765421 011255666665543 36889999999 5566777776 776543
|
A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B. |
| >PRK05286 dihydroorotate dehydrogenase 2; Reviewed | Back alignment and domain information |
|---|
Probab=92.12 E-value=3.9 Score=39.06 Aligned_cols=156 Identities=13% Similarity=0.157 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHHHCCCCEEEecCCC-------CCCcccCCCCccccccCCHHH----HHHHHHHHHhc-CCCcEEEEecc
Q 020423 136 LDNLAKATELANAYNYDEINLNCGC-------PSPKVAGHGCFGVSLMLDPKF----VGEAMSVIAAN-TNVPVSVKCRI 203 (326)
Q Consensus 136 ~~~f~~aA~~a~~aG~d~Iein~g~-------P~~~~~r~d~yGgsl~~r~~~----l~eiv~avr~~-~~~pv~vK~r~ 203 (326)
.....+..+.+.++||.+|++..=. |.+...+..+ ..++.|..-+ +..+++.+++. .+.|+.+.+.-
T Consensus 68 ~~~~~~~~~~~~~~G~Gavv~ktvt~~p~~gn~~pr~~~~~~-~~~~~N~~gl~n~g~~~~~~~l~~~~~~~pvivsI~~ 146 (344)
T PRK05286 68 FDKNGEAIDALGALGFGFVEVGTVTPRPQPGNPKPRLFRLPE-DEALINRMGFNNDGADALAERLKKAYRGIPLGINIGK 146 (344)
T ss_pred CCCChHHHHHHHHcCCCEEEeCCcCCCCCCCCCCCCEEeccc-ccccccCCCCCCHhHHHHHHHHHHhcCCCcEEEEEec
Confidence 3345567777889999999996432 2222112111 0122332222 44455555443 57888888744
Q ss_pred C--CCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCC----CceEEEe--CC
Q 020423 204 G--VDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFP----DLTFTLN--GG 275 (326)
Q Consensus 204 g--~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~----~iPVIa~--Gg 275 (326)
. .+.....+|..+.+.+ ++ .++|+|.+.-.-+...+... ...+....+.+.++++... ++||++= -+
T Consensus 147 ~~~~~~~~~~~d~~~~~~~-~~-~~ad~lelN~scP~~~g~~~---~~~~~~~~eiv~aVr~~~~~~~~~~PV~vKlsp~ 221 (344)
T PRK05286 147 NKDTPLEDAVDDYLICLEK-LY-PYADYFTVNISSPNTPGLRD---LQYGEALDELLAALKEAQAELHGYVPLLVKIAPD 221 (344)
T ss_pred CCCCCcccCHHHHHHHHHH-HH-hhCCEEEEEccCCCCCCccc---ccCHHHHHHHHHHHHHHHhccccCCceEEEeCCC
Confidence 2 1112345565553333 33 26999988632221111100 0111111344455554432 2888763 23
Q ss_pred CCC--HHHHHH-HHHhCCChhhhhH
Q 020423 276 INT--VDEVNA-ALRKGAHHVMVGR 297 (326)
Q Consensus 276 I~s--~~da~~-~l~~GaD~V~iGR 297 (326)
+.. ...+.+ +.+.|+|+|.+--
T Consensus 222 ~~~~~~~~ia~~l~~~Gadgi~~~n 246 (344)
T PRK05286 222 LSDEELDDIADLALEHGIDGVIATN 246 (344)
T ss_pred CCHHHHHHHHHHHHHhCCcEEEEeC
Confidence 321 223333 3347999998743
|
|
| >TIGR03586 PseI pseudaminic acid synthase | Back alignment and domain information |
|---|
Probab=92.04 E-value=2.3 Score=40.44 Aligned_cols=124 Identities=16% Similarity=0.150 Sum_probs=70.4
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCCc---------ccCCCCccc-c---ccCCHHHHHHHHHHH---HhcCCCcEE
Q 020423 135 NLDNLAKATELANAYNYDEINLNCGCPSPK---------VAGHGCFGV-S---LMLDPKFVGEAMSVI---AANTNVPVS 198 (326)
Q Consensus 135 ~~~~f~~aA~~a~~aG~d~Iein~g~P~~~---------~~r~d~yGg-s---l~~r~~~l~eiv~av---r~~~~~pv~ 198 (326)
+.+...+.++.++++|+|+|-.+.-.+..- ..+.+.|.+ + +.++.++-.|....+ .+..|+++.
T Consensus 15 ~~~~A~~lI~~A~~aGAdavKFQ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~e~~~~L~~~~~~~Gi~~~ 94 (327)
T TIGR03586 15 SLERALAMIEAAKAAGADAIKLQTYTPDTITLDSDRPEFIIKGGLWDGRTLYDLYQEAHTPWEWHKELFERAKELGLTIF 94 (327)
T ss_pred hHHHHHHHHHHHHHhCCCEEEeeeccHHHhhccccccccccccCCcCCccHHHHHHHhhCCHHHHHHHHHHHHHhCCcEE
Confidence 456666777788999999998864322110 001122321 0 111122222332233 344577664
Q ss_pred EEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCC
Q 020423 199 VKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT 278 (326)
Q Consensus 199 vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s 278 (326)
.- + + + .+ .+ ..+++.|++.+-|..++- .++.++.++.+. +.|||.+-|..+
T Consensus 95 st--p-f-d---~~-sv----d~l~~~~v~~~KI~S~~~---------------~n~~LL~~va~~--gkPvilstG~~t 145 (327)
T TIGR03586 95 SS--P-F-D---ET-AV----DFLESLDVPAYKIASFEI---------------TDLPLIRYVAKT--GKPIIMSTGIAT 145 (327)
T ss_pred Ec--c-C-C---HH-HH----HHHHHcCCCEEEECCccc---------------cCHHHHHHHHhc--CCcEEEECCCCC
Confidence 31 1 1 1 11 12 234568999999876542 237777777653 889999988899
Q ss_pred HHHHHHHHH
Q 020423 279 VDEVNAALR 287 (326)
Q Consensus 279 ~~da~~~l~ 287 (326)
.+++..+++
T Consensus 146 ~~Ei~~Av~ 154 (327)
T TIGR03586 146 LEEIQEAVE 154 (327)
T ss_pred HHHHHHHHH
Confidence 999888776
|
|
| >cd00739 DHPS DHPS subgroup of Pterin binding enzymes | Back alignment and domain information |
|---|
Probab=92.03 E-value=2.2 Score=39.12 Aligned_cols=60 Identities=22% Similarity=0.195 Sum_probs=41.8
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEE
Q 020423 135 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSV 199 (326)
Q Consensus 135 ~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~v 199 (326)
+.+...+.|....+.|+|.|||++.+..+... +-+-+...+.+..+++.+++.++.|+++
T Consensus 22 ~~~~~~~~a~~~~~~GAdiIDIG~~st~p~~~-----~i~~~~E~~rl~~~v~~i~~~~~~plSI 81 (257)
T cd00739 22 SLDKAVAHAEKMIAEGADIIDIGGESTRPGAD-----PVSVEEELERVIPVLEALRGELDVLISV 81 (257)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCcCCCCCC-----CCCHHHHHHHHHHHHHHHHhcCCCcEEE
Confidence 56777777888888999999998754433211 1222344567777889998877888866
|
DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. |
| >PF03740 PdxJ: Pyridoxal phosphate biosynthesis protein PdxJ; InterPro: IPR004569 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal) | Back alignment and domain information |
|---|
Probab=91.92 E-value=1.2 Score=40.12 Aligned_cols=150 Identities=13% Similarity=0.111 Sum_probs=83.6
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCC----------------------------------------------CCCCcccCC
Q 020423 135 NLDNLAKATELANAYNYDEINLNCG----------------------------------------------CPSPKVAGH 168 (326)
Q Consensus 135 ~~~~f~~aA~~a~~aG~d~Iein~g----------------------------------------------~P~~~~~r~ 168 (326)
+..+..++|..+.++|+|+|.+|.- -|......+
T Consensus 20 ~~Pdpv~aA~~a~~aGAdgITvHlReDrRHI~d~Dv~~L~~~~~~~lNlE~a~t~e~~~ia~~~kP~~vtLVPE~r~e~T 99 (239)
T PF03740_consen 20 NYPDPVEAARIAEEAGADGITVHLREDRRHIQDRDVRRLRELVKTPLNLEMAPTEEMVDIALKVKPDQVTLVPEKREELT 99 (239)
T ss_dssp S-S-HHHHHHHHHHTT-SEEEEEB-TT-SSS-HHHHHHHHHH-SSEEEEEEESSHHHHHHHHHH--SEEEEE--SGGGBS
T ss_pred CCCCHHHHHHHHHHcCCCEEEeccCCCcCcCCHHHHHHHHHHcccCEEeccCCCHHHHHHHHhCCcCEEEECCCCCCCcC
Confidence 3445788999999999999999753 122222234
Q ss_pred CCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcC
Q 020423 169 GCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENR 248 (326)
Q Consensus 169 d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~ 248 (326)
-+.|-++..+.+.+.++++.+++ .|+.+++-+-+. .++ ++ ...+.|+|+|.+|.+.... -....
T Consensus 100 TegGldv~~~~~~l~~~i~~L~~-~gIrvSLFiDP~------~~q-i~----~A~~~Gad~VELhTG~yA~-a~~~~--- 163 (239)
T PF03740_consen 100 TEGGLDVAGNRDRLKPVIKRLKD-AGIRVSLFIDPD------PEQ-IE----AAKELGADRVELHTGPYAN-AFDDA--- 163 (239)
T ss_dssp TTSSB-TCGGHHHHHHHHHHHHH-TT-EEEEEE-S-------HHH-HH----HHHHTT-SEEEEETHHHHH-HSSHH---
T ss_pred CCcCChhhcCHHHHHHHHHHHHh-CCCEEEEEeCCC------HHH-HH----HHHHcCCCEEEEehhHhhh-hcCCH---
Confidence 44477888889999999999976 477877765542 222 12 2346899999999764210 00000
Q ss_pred CCCCcc---HHHHHHH---HhcCCCceEEEeCCCCCHHHHHHHHH-hCCChhhhhHHHHhCCc
Q 020423 249 TIPPLK---YEYYYAL---LRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQNPW 304 (326)
Q Consensus 249 ~~~~~~---~~~i~~i---~~~~~~iPVIa~GgI~s~~da~~~l~-~GaD~V~iGRall~dP~ 304 (326)
.... ++.+... ..+ ..+-|=+..|+ +.+.+..+.+ -+.+=|.||.+++++--
T Consensus 164 --~~~~~ell~~l~~aa~~a~~-lGL~VnAGHgL-~y~N~~~i~~i~~i~EvnIGHaiia~Al 222 (239)
T PF03740_consen 164 --EEAEEELLERLRDAARYAHE-LGLGVNAGHGL-NYDNVRPIAAIPPIEEVNIGHAIIARAL 222 (239)
T ss_dssp --HHHHHHHHHHHHHHHHHHHH-TT-EEEEETT---TTTHHHHHTSTTEEEEEE-HHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHHHH-cCCEEecCCCC-CHHHHHHHHhCCCceEEecCHHHHHHHH
Confidence 0000 1222221 222 36777778887 5566666666 56888889988887644
|
Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. In Escherichia coli, the pdx genes involved in vitamin B6 have been characterised [, , ]. This entry represents PdxJ, which catalyses the condensation of 1-amino-3-oxo-4-(phosphohydroxy)propan-2-one and 1-deoxy-D-xylulose-5-phosphate to form pyridoxine-5'-phosphate. The product of the PdxJ reaction is then oxidized by PdxH to pyridoxal 5'-phosphate.; GO: 0008615 pyridoxine biosynthetic process, 0005737 cytoplasm; PDB: 3F4N_B 3O6D_A 3O6C_A 1M5W_G 1IXQ_D 1IXP_B 1IXN_A 1HO4_C 1HO1_A 1IXO_D .... |
| >cd00311 TIM Triosephosphate isomerase (TIM) is a glycolytic enzyme that catalyzes the interconversion of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate | Back alignment and domain information |
|---|
Probab=91.88 E-value=1.2 Score=40.59 Aligned_cols=42 Identities=19% Similarity=0.290 Sum_probs=34.9
Q ss_pred CceEEEeCCCCCHHHHHHHHHhC-CChhhhhHHHHhCCchhHHhH
Q 020423 267 DLTFTLNGGINTVDEVNAALRKG-AHHVMVGRAAYQNPWYTLGHV 310 (326)
Q Consensus 267 ~iPVIa~GgI~s~~da~~~l~~G-aD~V~iGRall~dP~l~~~~i 310 (326)
+++|+..|+|.. +++.++++.+ +|++.||++.| ++.-|...+
T Consensus 199 ~~~IlYGGSV~~-~N~~~l~~~~~vDG~LVG~Asl-~~~~f~~Ii 241 (242)
T cd00311 199 KVRILYGGSVNP-ENAAELLAQPDIDGVLVGGASL-KAESFLDII 241 (242)
T ss_pred ceeEEECCCCCH-HHHHHHhcCCCCCEEEeehHhh-CHHHHHHHh
Confidence 689999999966 9999999976 99999999999 455455543
|
The reaction is very efficient and requires neither cofactors nor metal ions. TIM, usually homodimeric, but in some organisms tetrameric, is ubiqitous and conserved in function across eukaryotes, bacteria and archaea. |
| >PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional | Back alignment and domain information |
|---|
Probab=91.85 E-value=2.3 Score=39.17 Aligned_cols=111 Identities=13% Similarity=0.103 Sum_probs=61.0
Q ss_pred cccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEE-EecCCcccCCCCcCCcCCC
Q 020423 172 GVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFI-IHSRKALLNGISPAENRTI 250 (326)
Q Consensus 172 Ggsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~-v~~~~~~~~g~~~~~~~~~ 250 (326)
|+...++..++.++ ...+.||.+|-... .+++|+...+ +.+...|-.-++ ++-+.....+ ...
T Consensus 117 ga~~~~n~~LL~~~-----a~~gkPV~lk~G~~----~s~~e~~~A~-e~i~~~Gn~~i~L~~rG~~t~~~------Y~~ 180 (266)
T PRK13398 117 GSRNMQNFELLKEV-----GKTKKPILLKRGMS----ATLEEWLYAA-EYIMSEGNENVVLCERGIRTFET------YTR 180 (266)
T ss_pred CcccccCHHHHHHH-----hcCCCcEEEeCCCC----CCHHHHHHHH-HHHHhcCCCeEEEEECCCCCCCC------CCH
Confidence 33344555554444 35689999984442 2455655543 344557775444 4432211111 111
Q ss_pred CCccHHHHHHHHhcCCCceEEE-eCCCCC-----HHHHHHHHHhCCChhhhhHHH
Q 020423 251 PPLKYEYYYALLRDFPDLTFTL-NGGINT-----VDEVNAALRKGAHHVMVGRAA 299 (326)
Q Consensus 251 ~~~~~~~i~~i~~~~~~iPVIa-~GgI~s-----~~da~~~l~~GaD~V~iGRal 299 (326)
...++..+..+++.. ++||+. +.-... +..+..++..|||++++=+-+
T Consensus 181 ~~vdl~~i~~lk~~~-~~pV~~D~sHs~G~~~~v~~~~~aAva~Ga~Gl~iE~H~ 234 (266)
T PRK13398 181 NTLDLAAVAVIKELS-HLPIIVDPSHATGRRELVIPMAKAAIAAGADGLMIEVHP 234 (266)
T ss_pred HHHHHHHHHHHHhcc-CCCEEEeCCCcccchhhHHHHHHHHHHcCCCEEEEeccC
Confidence 223455566555554 799999 343333 566677778999988876543
|
|
| >TIGR00559 pdxJ pyridoxine 5'-phosphate synthase | Back alignment and domain information |
|---|
Probab=91.77 E-value=1.9 Score=38.80 Aligned_cols=149 Identities=12% Similarity=0.079 Sum_probs=88.7
Q ss_pred HHHHHHHHHHHHCCCCEEEecCC----------------------------------------------CCCCccc-CCC
Q 020423 137 DNLAKATELANAYNYDEINLNCG----------------------------------------------CPSPKVA-GHG 169 (326)
Q Consensus 137 ~~f~~aA~~a~~aG~d~Iein~g----------------------------------------------~P~~~~~-r~d 169 (326)
.+-.++|..+.++|+|+|.+|.- -|..... .++
T Consensus 21 Pd~v~aA~~a~~aGAdgITvHlReDrRHI~d~Dv~~l~~~~~~~lNlE~a~~~emi~ia~~vkP~~vtLVPEkr~ElTTe 100 (237)
T TIGR00559 21 PDPLRAALIAEQAGADGITVHLREDRRHIQDRDVYDLKEALTTPFNIEMAPTEEMIRIAEEIKPEQVTLVPEARDEVTTE 100 (237)
T ss_pred CCHHHHHHHHHHcCCCEEEecCCCCcCcCCHHHHHHHHHHcCCCEEeccCCCHHHHHHHHHcCCCEEEECCCCCCCccCC
Confidence 44678888999999999998742 1221111 233
Q ss_pred CccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCC
Q 020423 170 CFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRT 249 (326)
Q Consensus 170 ~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~ 249 (326)
+ |-++..+.+++.++++.+++ .|+.+++-+-+. .++ ++ ...+.|+|.|.+|.+.... .+... .
T Consensus 101 g-Gldv~~~~~~l~~~i~~l~~-~gI~VSLFiDP~------~~q-i~----~A~~~GAd~VELhTG~YA~-a~~~~---~ 163 (237)
T TIGR00559 101 G-GLDVARLKDKLCELVKRFHA-AGIEVSLFIDAD------KDQ-IS----AAAEVGADRIEIHTGPYAN-AYNKK---E 163 (237)
T ss_pred c-CchhhhCHHHHHHHHHHHHH-CCCEEEEEeCCC------HHH-HH----HHHHhCcCEEEEechhhhc-CCCch---h
Confidence 3 66777788999999999855 477777754442 222 12 2346899999999764211 00000 0
Q ss_pred CCCccHHHHHHHHhc--CCCceEEEeCCCCCHHHHHHHHH-hC-CChhhhhHHHHhCCc
Q 020423 250 IPPLKYEYYYALLRD--FPDLTFTLNGGINTVDEVNAALR-KG-AHHVMVGRAAYQNPW 304 (326)
Q Consensus 250 ~~~~~~~~i~~i~~~--~~~iPVIa~GgI~s~~da~~~l~-~G-aD~V~iGRall~dP~ 304 (326)
. ..-++.+....+. ...+-|=+.-|+ +.+.+..+.+ .+ .+=|.||.+++++--
T Consensus 164 ~-~~el~~i~~aa~~A~~lGL~VnAGHgL-ny~Nv~~i~~~~~~i~EvnIGHsiia~Al 220 (237)
T TIGR00559 164 M-AEELQRIVKASVHAHSLGLKVNAGHGL-NYHNVKYFAEILPYLDELNIGHAIIADAV 220 (237)
T ss_pred H-HHHHHHHHHHHHHHHHcCCEEecCCCC-CHHhHHHHHhCCCCceEEecCHHHHHHHH
Confidence 0 0012222222211 125666666676 6777777666 34 888999999887654
|
PdxJ is required in the biosynthesis of pyridoxine (vitamin B6), a precursor to the enzyme cofactor pyridoxal phosphate. ECOCYC describes the predicted reaction equation as 1-amino-propan-2-one-3-phosphate + deoxyxylulose-5-phosphate = pyridoxine-5'-phosphate. The product of that reaction is oxidized by PdxH to pyridoxal 5'-phosphate. |
| >PRK11572 copper homeostasis protein CutC; Provisional | Back alignment and domain information |
|---|
Probab=91.68 E-value=4.7 Score=36.73 Aligned_cols=78 Identities=14% Similarity=0.099 Sum_probs=45.4
Q ss_pred HHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCC----CccHHHHHH
Q 020423 141 KATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDD----HDSYNQLCD 216 (326)
Q Consensus 141 ~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~----~~~~~e~~~ 216 (326)
+.|..|+++|+|-|||..+-.. || +--... .++.+++.+++|+.+=+|+-..+ ..+++.+.+
T Consensus 12 ~~a~~A~~~GAdRiELc~~L~~---------GG-lTPS~g----~i~~~~~~~~ipv~vMIRPR~gdF~Ys~~E~~~M~~ 77 (248)
T PRK11572 12 ECALTAQQAGADRIELCAAPKE---------GG-LTPSLG----VLKSVRERVTIPVHPIIRPRGGDFCYSDGEFAAMLE 77 (248)
T ss_pred HHHHHHHHcCCCEEEEccCcCC---------CC-cCCCHH----HHHHHHHhcCCCeEEEEecCCCCCCCCHHHHHHHHH
Confidence 3567788899999999643111 21 111222 34445556678888777764222 123444444
Q ss_pred HHHHHhhhCCccEEEEe
Q 020423 217 FIYKVSSLSPTRHFIIH 233 (326)
Q Consensus 217 ~ia~~le~~Gvd~I~v~ 233 (326)
.+. .+.+.|+|.+.+-
T Consensus 78 di~-~~~~~GadGvV~G 93 (248)
T PRK11572 78 DIA-TVRELGFPGLVTG 93 (248)
T ss_pred HHH-HHHHcCCCEEEEe
Confidence 433 4567999999873
|
|
| >TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein | Back alignment and domain information |
|---|
Probab=91.62 E-value=7.7 Score=36.09 Aligned_cols=109 Identities=11% Similarity=0.086 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHHHHhhhC--CccEEEEecCCcccCCCCcCCcCCCCCccHH
Q 020423 179 PKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLS--PTRHFIIHSRKALLNGISPAENRTIPPLKYE 256 (326)
Q Consensus 179 ~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~--Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~ 256 (326)
.+...+.+....+..+.|+.+-+... +.+++.+ +++.++++ ++|+|.+.-.-+...+... .....+....+
T Consensus 75 ~~~~~~~~~~~~~~~~~pl~~qi~g~-----~~~~~~~-~a~~~~~~~~~~d~ielN~~cP~~~~~g~-~l~~~~~~~~e 147 (300)
T TIGR01037 75 VEAFLEELKPVREEFPTPLIASVYGS-----SVEEFAE-VAEKLEKAPPYVDAYELNLSCPHVKGGGI-AIGQDPELSAD 147 (300)
T ss_pred HHHHHHHHHHHhccCCCcEEEEeecC-----CHHHHHH-HHHHHHhccCccCEEEEECCCCCCCCCcc-ccccCHHHHHH
Confidence 33334444444444567888776432 2345544 34455655 3999998644322222111 00011112244
Q ss_pred HHHHHHhcCCCceEEEeCC--CCCHHHHHH-HHHhCCChhhh
Q 020423 257 YYYALLRDFPDLTFTLNGG--INTVDEVNA-ALRKGAHHVMV 295 (326)
Q Consensus 257 ~i~~i~~~~~~iPVIa~Gg--I~s~~da~~-~l~~GaD~V~i 295 (326)
.+.++++.. ++||++=-. +.+...+.+ +.+.|+|++.+
T Consensus 148 iv~~vr~~~-~~pv~vKi~~~~~~~~~~a~~l~~~G~d~i~v 188 (300)
T TIGR01037 148 VVKAVKDKT-DVPVFAKLSPNVTDITEIAKAAEEAGADGLTL 188 (300)
T ss_pred HHHHHHHhc-CCCEEEECCCChhhHHHHHHHHHHcCCCEEEE
Confidence 555555543 788876543 323333333 33489999987
|
This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase. |
| >PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART) | Back alignment and domain information |
|---|
Probab=91.62 E-value=1.4 Score=40.29 Aligned_cols=75 Identities=23% Similarity=0.270 Sum_probs=35.4
Q ss_pred HhhhCCccEEEEecCCcccCCCCcCCcCCCCCcc--HHH---HHHHHhc-CCCceEEE-eCCCCCHHHHHHHHH--hCCC
Q 020423 221 VSSLSPTRHFIIHSRKALLNGISPAENRTIPPLK--YEY---YYALLRD-FPDLTFTL-NGGINTVDEVNAALR--KGAH 291 (326)
Q Consensus 221 ~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~--~~~---i~~i~~~-~~~iPVIa-~GgI~s~~da~~~l~--~GaD 291 (326)
.+.++|+|.|++|-+... +|..+.. ...... .+. +.+..++ .+++-+++ .|-|.+|+|+..+++ .|++
T Consensus 165 ~M~~AGaDiiv~H~GlT~-gG~~Ga~--~~~sl~~a~~~~~~i~~aa~~v~~dii~l~hGGPI~~p~D~~~~l~~t~~~~ 241 (268)
T PF09370_consen 165 AMAEAGADIIVAHMGLTT-GGSIGAK--TALSLEEAAERIQEIFDAARAVNPDIIVLCHGGPIATPEDAQYVLRNTKGIH 241 (268)
T ss_dssp HHHHHT-SEEEEE-SS-------------S--HHHHHHHHHHHHHHHHCC-TT-EEEEECTTB-SHHHHHHHHHH-TTEE
T ss_pred HHHHcCCCEEEecCCccC-CCCcCcc--ccCCHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHHHHHHhcCCCCC
Confidence 344799999999965431 2332221 111111 112 2222222 34655544 455999999999998 4577
Q ss_pred hhhhhHH
Q 020423 292 HVMVGRA 298 (326)
Q Consensus 292 ~V~iGRa 298 (326)
+..-|+.
T Consensus 242 Gf~G~Ss 248 (268)
T PF09370_consen 242 GFIGASS 248 (268)
T ss_dssp EEEESTT
T ss_pred EEecccc
Confidence 7665544
|
Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C. |
| >cd08205 RuBisCO_IV_RLP Ribulose bisphosphate carboxylase like proteins, Rubisco-Form IV | Back alignment and domain information |
|---|
Probab=91.60 E-value=4.3 Score=39.24 Aligned_cols=100 Identities=13% Similarity=0.006 Sum_probs=65.0
Q ss_pred CCCcEEEEec----CCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEE
Q 020423 123 EQHPIVLQIG----GSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVS 198 (326)
Q Consensus 123 ~~~piivQL~----g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~ 198 (326)
.++|++.-++ +-+++.+++.+..+.+.|.|+|-..-+.-... =.+++.|.+.+.+.++.+.+.+|....
T Consensus 128 ~~rPli~Ti~kp~~gld~~~la~~~~~l~~gGvD~Ikdde~~ge~~-------~~~~eER~~~v~~av~~a~~~TG~~~~ 200 (367)
T cd08205 128 HDRPLLGTIIKPSIGLSPEELAELAYELALGGIDLIKDDELLADQP-------YAPFEERVRACMEAVRRANEETGRKTL 200 (367)
T ss_pred CCCCeeeeeeCCCCCCCHHHHHHHHHHHHhcCCCeeeccccccCcc-------cCCHHHHHHHHHHHHHHHHHhhCCcce
Confidence 4688888865 45789999999999999999996542211110 123446788888888888877754322
Q ss_pred EEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEec
Q 020423 199 VKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHS 234 (326)
Q Consensus 199 vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~ 234 (326)
+=.... . ..+|+.+ .++..+++|+|.+-+..
T Consensus 201 y~~nit--~--~~~e~i~-~a~~a~~~Gad~vmv~~ 231 (367)
T cd08205 201 YAPNIT--G--DPDELRR-RADRAVEAGANALLINP 231 (367)
T ss_pred EEEEcC--C--CHHHHHH-HHHHHHHcCCCEEEEec
Confidence 211221 1 2345555 34556789999998764
|
Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions, like for example 2,3-diketo-5-methylthiopentyl-1-phosphate enolase or 5-methyl |
| >PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating) | Back alignment and domain information |
|---|
Probab=91.57 E-value=1.1 Score=42.14 Aligned_cols=70 Identities=9% Similarity=0.090 Sum_probs=45.5
Q ss_pred CCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcC-CCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhCC
Q 020423 225 SPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF-PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNP 303 (326)
Q Consensus 225 ~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~-~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~dP 303 (326)
+|+|.|-+..-.. ++.+ -. ...+.+++.++.. ...|+-++||| +.+.+.++.++|+|.+.+|.....-|
T Consensus 228 agaDiImLDnm~~-----~~~~-~~---~~~e~l~~av~~~~~~~~lEaSGGI-t~~ni~~yA~tGVD~Is~Galthsa~ 297 (308)
T PLN02716 228 TSLTRVMLDNMVV-----PLEN-GD---VDVSMLKEAVELINGRFETEASGNV-TLDTVHKIGQTGVTYISSGALTHSVK 297 (308)
T ss_pred CCCCEEEeCCCcc-----cccc-cC---CCHHHHHHHHHhhCCCceEEEECCC-CHHHHHHHHHcCCCEEEeCccccCCC
Confidence 8999998875411 0000 00 0133344433321 25789999999 89999999999999999997655334
Q ss_pred c
Q 020423 304 W 304 (326)
Q Consensus 304 ~ 304 (326)
+
T Consensus 298 ~ 298 (308)
T PLN02716 298 A 298 (308)
T ss_pred c
Confidence 3
|
|
| >TIGR00674 dapA dihydrodipicolinate synthase | Back alignment and domain information |
|---|
Probab=91.57 E-value=11 Score=34.77 Aligned_cols=66 Identities=14% Similarity=0.233 Sum_probs=50.4
Q ss_pred CCCCcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEE
Q 020423 122 PEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVK 200 (326)
Q Consensus 122 ~~~~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK 200 (326)
+...|++++....+.++-.+.|+.++++|+|+|-+-. |. |.. ...+-+.+..+.|.++++.|+.+=
T Consensus 65 ~~~~~vi~gv~~~s~~~~i~~a~~a~~~Gad~v~v~p--P~--------y~~---~~~~~i~~~~~~i~~~~~~pi~lY 130 (285)
T TIGR00674 65 NGRVPVIAGTGSNATEEAISLTKFAEDVGADGFLVVT--PY--------YNK---PTQEGLYQHFKAIAEEVDLPIILY 130 (285)
T ss_pred CCCCeEEEeCCCccHHHHHHHHHHHHHcCCCEEEEcC--Cc--------CCC---CCHHHHHHHHHHHHhcCCCCEEEE
Confidence 3456899999888899999999999999999999953 32 110 134667777777777788998765
|
Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment. |
| >PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional | Back alignment and domain information |
|---|
Probab=91.56 E-value=4.7 Score=38.71 Aligned_cols=138 Identities=13% Similarity=0.102 Sum_probs=75.3
Q ss_pred CCCCCcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEE
Q 020423 121 SPEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVK 200 (326)
Q Consensus 121 ~~~~~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK 200 (326)
++.|-+++-.++. +++ ++.+.++ .|.+.| |+..+++..+ ++++ ..++.||.+|
T Consensus 162 ~e~Gl~~~tev~d--~~~----v~~~~~~-~d~lqI---------------ga~~~~n~~L----L~~v-a~t~kPVllk 214 (352)
T PRK13396 162 EATGLGIITEVMD--AAD----LEKIAEV-ADVIQV---------------GARNMQNFSL----LKKV-GAQDKPVLLK 214 (352)
T ss_pred HHcCCcEEEeeCC--HHH----HHHHHhh-CCeEEE---------------CcccccCHHH----HHHH-HccCCeEEEe
Confidence 3456666666543 222 2333344 477666 3333345444 4444 3458999999
Q ss_pred eccCCCCCccHHHHHHHHHHHhhhCCcc-EEEEecCCcccC-CCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeC----
Q 020423 201 CRIGVDDHDSYNQLCDFIYKVSSLSPTR-HFIIHSRKALLN-GISPAENRTIPPLKYEYYYALLRDFPDLTFTLNG---- 274 (326)
Q Consensus 201 ~r~g~~~~~~~~e~~~~ia~~le~~Gvd-~I~v~~~~~~~~-g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~G---- 274 (326)
-... .+++|+...+.. +...|-. .+-+|-+..... ++ .....++..+..+++.+ ++|||..-
T Consensus 215 ~G~~----~t~ee~~~A~e~-i~~~Gn~~viL~erG~rtf~s~y------~~~~~dl~ai~~lk~~~-~lPVi~DpsH~~ 282 (352)
T PRK13396 215 RGMA----ATIDEWLMAAEY-ILAAGNPNVILCERGIRTFDRQY------TRNTLDLSVIPVLRSLT-HLPIMIDPSHGT 282 (352)
T ss_pred CCCC----CCHHHHHHHHHH-HHHcCCCeEEEEecCCccCcCCC------CCCCcCHHHHHHHHHhh-CCCEEECCcccC
Confidence 4443 245566554333 3456764 555565442221 11 12345677787776554 89998762
Q ss_pred CCC--CHHHHHHHHHhCCChhhhhH
Q 020423 275 GIN--TVDEVNAALRKGAHHVMVGR 297 (326)
Q Consensus 275 gI~--s~~da~~~l~~GaD~V~iGR 297 (326)
|.+ .+.-+..++..|||++++=+
T Consensus 283 G~sd~~~~~a~AAva~GAdGliIE~ 307 (352)
T PRK13396 283 GKSEYVPSMAMAAIAAGTDSLMIEV 307 (352)
T ss_pred CcHHHHHHHHHHHHhhCCCeEEEEe
Confidence 222 23445566678999887743
|
|
| >TIGR03569 NeuB_NnaB N-acetylneuraminate synthase | Back alignment and domain information |
|---|
Probab=91.55 E-value=8.8 Score=36.53 Aligned_cols=133 Identities=14% Similarity=0.175 Sum_probs=76.2
Q ss_pred CHHHHHHHHHHHHHCCCCEEEec-----------CCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEecc
Q 020423 135 NLDNLAKATELANAYNYDEINLN-----------CGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRI 203 (326)
Q Consensus 135 ~~~~f~~aA~~a~~aG~d~Iein-----------~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~ 203 (326)
..+++....+.+++.|.+.+--- +++|.-+ -|+.-+++..++.++- ..+.|+.++...
T Consensus 74 ~~e~~~~L~~~~~~~Gi~~~stpfd~~svd~l~~~~v~~~K------IaS~~~~n~pLL~~~A-----~~gkPvilStGm 142 (329)
T TIGR03569 74 SEEDHRELKEYCESKGIEFLSTPFDLESADFLEDLGVPRFK------IPSGEITNAPLLKKIA-----RFGKPVILSTGM 142 (329)
T ss_pred CHHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHhcCCCEEE------ECcccccCHHHHHHHH-----hcCCcEEEECCC
Confidence 45677777777777776665432 2233322 2444446666655543 358999998544
Q ss_pred CCCCCccHHHHHHHHHHHhhhCCcc---EEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHH
Q 020423 204 GVDDHDSYNQLCDFIYKVSSLSPTR---HFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVD 280 (326)
Q Consensus 204 g~~~~~~~~e~~~~ia~~le~~Gvd---~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~ 280 (326)
. +++|+...+ +.+.+.|.+ .+.+|....+ . .+ ....+...+..+++.+ ++||..++=-....
T Consensus 143 a-----tl~Ei~~Av-~~i~~~G~~~~~i~llhC~s~Y-P--~~-----~~~~nL~~I~~Lk~~f-~~pVG~SdHt~G~~ 207 (329)
T TIGR03569 143 A-----TLEEIEAAV-GVLRDAGTPDSNITLLHCTTEY-P--AP-----FEDVNLNAMDTLKEAF-DLPVGYSDHTLGIE 207 (329)
T ss_pred C-----CHHHHHHHH-HHHHHcCCCcCcEEEEEECCCC-C--CC-----cccCCHHHHHHHHHHh-CCCEEECCCCccHH
Confidence 2 445554433 344567764 6666754321 1 11 1234567777777776 79999875443344
Q ss_pred HHHHHHHhCCChh
Q 020423 281 EVNAALRKGAHHV 293 (326)
Q Consensus 281 da~~~l~~GaD~V 293 (326)
-...++..||+.|
T Consensus 208 ~~~aAvalGA~iI 220 (329)
T TIGR03569 208 APIAAVALGATVI 220 (329)
T ss_pred HHHHHHHcCCCEE
Confidence 4555666888844
|
This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine. |
| >TIGR03569 NeuB_NnaB N-acetylneuraminate synthase | Back alignment and domain information |
|---|
Probab=91.46 E-value=2 Score=40.82 Aligned_cols=50 Identities=20% Similarity=0.176 Sum_probs=38.6
Q ss_pred HhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHH
Q 020423 221 VSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR 287 (326)
Q Consensus 221 ~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~ 287 (326)
.+++.|++.+-|..++- .++.++.++.+. +.|||.+-|..+.+++..+++
T Consensus 104 ~l~~~~v~~~KIaS~~~---------------~n~pLL~~~A~~--gkPvilStGmatl~Ei~~Av~ 153 (329)
T TIGR03569 104 FLEDLGVPRFKIPSGEI---------------TNAPLLKKIARF--GKPVILSTGMATLEEIEAAVG 153 (329)
T ss_pred HHHhcCCCEEEECcccc---------------cCHHHHHHHHhc--CCcEEEECCCCCHHHHHHHHH
Confidence 44568999998876542 237777777653 889999999999999988876
|
This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine. |
| >TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase | Back alignment and domain information |
|---|
Probab=91.35 E-value=8.2 Score=35.97 Aligned_cols=127 Identities=11% Similarity=0.106 Sum_probs=70.7
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCc-cccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHH
Q 020423 135 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCF-GVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQ 213 (326)
Q Consensus 135 ~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~y-Ggsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e 213 (326)
+.+.+.+..+++.+.|.++|=++... +++ --+.+.|.+++..+++++.. ++||.+.+.. .+.++
T Consensus 19 D~~~l~~lv~~~~~~Gv~gi~v~Gst--------GE~~~Ls~~Er~~l~~~~~~~~~g--~~pvi~gv~~-----~~t~~ 83 (294)
T TIGR02313 19 DEEALRELIEFQIEGGSHAISVGGTS--------GEPGSLTLEERKQAIENAIDQIAG--RIPFAPGTGA-----LNHDE 83 (294)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECccC--------cccccCCHHHHHHHHHHHHHHhCC--CCcEEEECCc-----chHHH
Confidence 67888999999999999999997532 221 11222344444445544322 4678765433 23445
Q ss_pred HHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEE------eCCCCCHHHHHHHH
Q 020423 214 LCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTL------NGGINTVDEVNAAL 286 (326)
Q Consensus 214 ~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa------~GgI~s~~da~~~l 286 (326)
.++ .++..++.|+|.+.+..... ...+ ...-.+++..+.+..+++||+. .|---+++.+.++.
T Consensus 84 ai~-~a~~A~~~Gad~v~v~pP~y--~~~~-------~~~l~~~f~~ia~a~~~lpv~iYn~P~~tg~~l~~~~l~~L~ 152 (294)
T TIGR02313 84 TLE-LTKFAEEAGADAAMVIVPYY--NKPN-------QEALYDHFAEVADAVPDFPIIIYNIPGRAAQEIAPKTMARLR 152 (294)
T ss_pred HHH-HHHHHHHcCCCEEEEcCccC--CCCC-------HHHHHHHHHHHHHhccCCCEEEEeCchhcCcCCCHHHHHHHH
Confidence 555 34556789999998875321 0000 0011344555554433667653 34444566666554
|
This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism. |
| >PRK03170 dihydrodipicolinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=91.31 E-value=12 Score=34.64 Aligned_cols=67 Identities=15% Similarity=0.209 Sum_probs=50.8
Q ss_pred CCCCcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEe
Q 020423 122 PEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKC 201 (326)
Q Consensus 122 ~~~~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~ 201 (326)
+...|+++++.+.+.++-.+.|+.++++|+|+|-+-. |. |.. ...+-+.+..+.|.+.++.|+.+=-
T Consensus 68 ~~~~~vi~gv~~~~~~~~i~~a~~a~~~G~d~v~~~p--P~--------~~~---~~~~~i~~~~~~ia~~~~~pv~lYn 134 (292)
T PRK03170 68 NGRVPVIAGTGSNSTAEAIELTKFAEKAGADGALVVT--PY--------YNK---PTQEGLYQHFKAIAEATDLPIILYN 134 (292)
T ss_pred CCCCcEEeecCCchHHHHHHHHHHHHHcCCCEEEECC--Cc--------CCC---CCHHHHHHHHHHHHhcCCCCEEEEE
Confidence 4456899999988999999999999999999999953 32 110 1245666777777777889988754
|
|
| >cd00423 Pterin_binding Pterin binding enzymes | Back alignment and domain information |
|---|
Probab=91.27 E-value=3.4 Score=37.76 Aligned_cols=62 Identities=19% Similarity=0.202 Sum_probs=43.7
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEE
Q 020423 134 SNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVK 200 (326)
Q Consensus 134 ~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK 200 (326)
.+.+...+.|+...+.|+|.|||++.+..+..... +.....+.+..+++.+++.++.|+++-
T Consensus 21 ~~~~~~~~~a~~~~~~GAdiIDvG~~st~p~~~~~-----~~~~E~~rl~~~v~~l~~~~~~piSID 82 (258)
T cd00423 21 LSLDKALEHARRMVEEGADIIDIGGESTRPGAEPV-----SVEEELERVIPVLRALAGEPDVPISVD 82 (258)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCcC-----CHHHHHHHHHHHHHHHHhcCCCeEEEe
Confidence 36777888888888999999999987755421111 112334678888888888778888663
|
This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH. |
| >PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=91.18 E-value=0.7 Score=42.44 Aligned_cols=72 Identities=17% Similarity=0.109 Sum_probs=55.7
Q ss_pred HHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhH
Q 020423 218 IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGR 297 (326)
Q Consensus 218 ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGR 297 (326)
+++..+++|++.|.|.....+.+ ..++.+..+++. +++||+.--=|.++.++.++.+.|||+|.+.-
T Consensus 75 ~A~~~~~~GA~aisvlte~~~f~------------g~~~~l~~v~~~-v~iPvl~kdfi~~~~qi~~a~~~GAD~VlLi~ 141 (260)
T PRK00278 75 IAKAYEAGGAACLSVLTDERFFQ------------GSLEYLRAARAA-VSLPVLRKDFIIDPYQIYEARAAGADAILLIV 141 (260)
T ss_pred HHHHHHhCCCeEEEEecccccCC------------CCHHHHHHHHHh-cCCCEEeeeecCCHHHHHHHHHcCCCEEEEEe
Confidence 45677889999998876443222 236777777665 59999998889999999999999999999987
Q ss_pred HHHhC
Q 020423 298 AAYQN 302 (326)
Q Consensus 298 all~d 302 (326)
..+.+
T Consensus 142 ~~l~~ 146 (260)
T PRK00278 142 AALDD 146 (260)
T ss_pred ccCCH
Confidence 77643
|
|
| >PTZ00333 triosephosphate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=91.16 E-value=6.2 Score=36.14 Aligned_cols=43 Identities=14% Similarity=0.294 Sum_probs=33.5
Q ss_pred CceEEEeCCCCCHHHHHHHH-HhCCChhhhhHHHHhCCchhHHhHHH
Q 020423 267 DLTFTLNGGINTVDEVNAAL-RKGAHHVMVGRAAYQNPWYTLGHVDT 312 (326)
Q Consensus 267 ~iPVIa~GgI~s~~da~~~l-~~GaD~V~iGRall~dP~l~~~~i~~ 312 (326)
+++|+..|+|.. +.+.+++ ..++|++.||++.+. +. |...++.
T Consensus 207 ~~~ILYGGSV~~-~N~~~l~~~~~vDG~LvG~asl~-~~-f~~Ii~~ 250 (255)
T PTZ00333 207 ATRIIYGGSVNE-KNCKELIKQPDIDGFLVGGASLK-PD-FVDIIKS 250 (255)
T ss_pred cceEEEcCCCCH-HHHHHHhcCCCCCEEEEehHhhh-hh-HHHHHHH
Confidence 589999999954 4555555 488999999999997 66 7777754
|
|
| >PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds [] | Back alignment and domain information |
|---|
Probab=91.14 E-value=1.7 Score=39.50 Aligned_cols=108 Identities=13% Similarity=0.138 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCc-----c
Q 020423 136 LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHD-----S 210 (326)
Q Consensus 136 ~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~-----~ 210 (326)
...|.+..+.+++.||+.|||.-|+-. -..+.-.++++.+ .+.-+.|+--.|..+.. +
T Consensus 83 q~~~~~yl~~~k~lGf~~IEiSdGti~--------------l~~~~r~~~I~~~---~~~Gf~v~~EvG~K~~~~~~~~~ 145 (244)
T PF02679_consen 83 QGKFDEYLEECKELGFDAIEISDGTID--------------LPEEERLRLIRKA---KEEGFKVLSEVGKKDPESDFSLD 145 (244)
T ss_dssp TT-HHHHHHHHHHCT-SEEEE--SSS-----------------HHHHHHHHHHH---CCTTSEEEEEES-SSHHHHTT--
T ss_pred cChHHHHHHHHHHcCCCEEEecCCcee--------------CCHHHHHHHHHHH---HHCCCEEeecccCCCchhcccCC
Confidence 345677778899999999999755322 1122333444443 33345566666644421 2
Q ss_pred HHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcC
Q 020423 211 YNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF 265 (326)
Q Consensus 211 ~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~ 265 (326)
+.++++.+.+-+ ++|+++|.+.+|+....|.... ......+.+.++.+..
T Consensus 146 ~~~~i~~~~~dL-eAGA~~ViiEarEsG~~Gi~~~----~g~~r~d~v~~i~~~~ 195 (244)
T PF02679_consen 146 PEELIEQAKRDL-EAGADKVIIEARESGKGGIYDN----DGEVRTDLVEKIIERL 195 (244)
T ss_dssp CCHHHHHHHHHH-HHTECEEEE--TTT--STTB-T----TS-B-HHHHHHHHTTS
T ss_pred HHHHHHHHHHHH-HCCCCEEEEeeeccCCCCccCC----CCCccHHHHHHHHHhC
Confidence 345566555555 4899999999987644444321 1233466777776553
|
Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A. |
| >PRK12399 tagatose 1,6-diphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=91.04 E-value=3.2 Score=39.06 Aligned_cols=152 Identities=13% Similarity=0.104 Sum_probs=75.4
Q ss_pred HHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccC---CCCC--cc-----H
Q 020423 142 ATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIG---VDDH--DS-----Y 211 (326)
Q Consensus 142 aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g---~~~~--~~-----~ 211 (326)
.++++++.|.|++-+-.- .+.|+=----..+-.+++++-++.++ -++|+.+-+=.. .++. .. .
T Consensus 110 S~~rike~GadavK~Lly------y~pD~~~~in~~k~a~vervg~eC~a-~dipf~lE~ltY~~~~~d~~~~~yak~kP 182 (324)
T PRK12399 110 SAKRIKEEGADAVKFLLY------YDVDEPDEINEQKKAYIERIGSECVA-EDIPFFLEILTYDEKIADNGSVEYAKVKP 182 (324)
T ss_pred hHHHHHHhCCCeEEEEEE------ECCCCCHHHHHHHHHHHHHHHHHHHH-CCCCeEEEEeeccCcccccccHHHHhhCh
Confidence 578899999999998542 12221000001233455666655543 388887754221 1111 11 1
Q ss_pred HHHHHHHHHHhh--hCCccEEEEecCCc--ccCCCCcCCcCCCCCccHHHHHHHHhcCCCce-EEEeCCCCCHHHHHHHH
Q 020423 212 NQLCDFIYKVSS--LSPTRHFIIHSRKA--LLNGISPAENRTIPPLKYEYYYALLRDFPDLT-FTLNGGINTVDEVNAAL 286 (326)
Q Consensus 212 ~e~~~~ia~~le--~~Gvd~I~v~~~~~--~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iP-VIa~GgI~s~~da~~~l 286 (326)
+.+.+ ..+.+. ..|+|.+-|.-... .-.|....+.-+........+++..+ ..++| |+.++|+ +.+...+.+
T Consensus 183 ~~V~~-a~kefs~~~~gvDVlKvEvPvn~~~veG~~~~e~~yt~~eA~~~f~~~~~-~~~~P~i~LSaGV-~~~~F~~~l 259 (324)
T PRK12399 183 HKVNE-AMKVFSKPRFGVDVLKVEVPVNMKYVEGFAEGEVVYTKEEAAQHFKEQDA-ATHLPYIYLSAGV-SAELFQETL 259 (324)
T ss_pred HHHHH-HHHHhccCCCCCcEEEEecccccccccccCcccccccHHHHHHHHHHHhh-ccCCCEEEEcCCC-CHHHHHHHH
Confidence 22223 233443 37999998853211 11222110000000001112333332 34788 6778898 445444444
Q ss_pred ----HhCC--ChhhhhHHHHhCC
Q 020423 287 ----RKGA--HHVMVGRAAYQNP 303 (326)
Q Consensus 287 ----~~Ga--D~V~iGRall~dP 303 (326)
+.|+ ++|..||+.=.++
T Consensus 260 ~~A~~aGa~fsGvL~GRAtW~~~ 282 (324)
T PRK12399 260 VFAHEAGAKFNGVLCGRATWAGS 282 (324)
T ss_pred HHHHHcCCCcceEEeehhhhHhh
Confidence 4688 7999999986553
|
|
| >PLN02535 glycolate oxidase | Back alignment and domain information |
|---|
Probab=91.03 E-value=2.6 Score=40.70 Aligned_cols=43 Identities=19% Similarity=0.249 Sum_probs=35.2
Q ss_pred CccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhh
Q 020423 252 PLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVG 296 (326)
Q Consensus 252 ~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iG 296 (326)
...|+.++.+++. .++|||+ .||.+++++..+.+.|+|+|.+.
T Consensus 209 ~~tW~~i~~lr~~-~~~Pviv-KgV~~~~dA~~a~~~GvD~I~vs 251 (364)
T PLN02535 209 SLSWKDIEWLRSI-TNLPILI-KGVLTREDAIKAVEVGVAGIIVS 251 (364)
T ss_pred CCCHHHHHHHHhc-cCCCEEE-ecCCCHHHHHHHHhcCCCEEEEe
Confidence 4568888888775 4899664 56789999999999999999774
|
|
| >PRK15440 L-rhamnonate dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=90.99 E-value=2.9 Score=40.76 Aligned_cols=70 Identities=7% Similarity=0.062 Sum_probs=41.7
Q ss_pred HHHCCCCEEEecCCC-CCCcccCCCCccccccCCHHHHHHHHHHHHhcCCC--cEEEEeccCCCCCccHHHHHHHHHHHh
Q 020423 146 ANAYNYDEINLNCGC-PSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNV--PVSVKCRIGVDDHDSYNQLCDFIYKVS 222 (326)
Q Consensus 146 a~~aG~d~Iein~g~-P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~--pv~vK~r~g~~~~~~~~e~~~~ia~~l 222 (326)
+++.||..+-+..+. |. . |. ..++.-.+.++++|+++|. .+.+-...+| +.++..+ +++.+
T Consensus 168 a~~~Gf~~~Kik~~~g~~-----~---g~---~~~~~di~~v~avReavG~d~~l~vDaN~~~----~~~~Ai~-~~~~l 231 (394)
T PRK15440 168 AKEMGFIGGKMPLHHGPA-----D---GD---AGLRKNAAMVADMREKVGDDFWLMLDCWMSL----DVNYATK-LAHAC 231 (394)
T ss_pred HHhCCCCEEEEcCCcCcc-----c---ch---HHHHHHHHHHHHHHHhhCCCCeEEEECCCCC----CHHHHHH-HHHHh
Confidence 356899999997631 21 0 10 1245567888888988854 4444433333 3444455 45566
Q ss_pred hhCCccEEE
Q 020423 223 SLSPTRHFI 231 (326)
Q Consensus 223 e~~Gvd~I~ 231 (326)
++.++.++.
T Consensus 232 e~~~l~wiE 240 (394)
T PRK15440 232 APYGLKWIE 240 (394)
T ss_pred hhcCCccee
Confidence 778887775
|
|
| >PRK07107 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=90.92 E-value=0.5 Score=47.58 Aligned_cols=64 Identities=16% Similarity=0.087 Sum_probs=45.3
Q ss_pred HHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhh
Q 020423 220 KVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMV 295 (326)
Q Consensus 220 ~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~i 295 (326)
+.+.++|+|.|.|.... |.+ ....+.++.+++.+++--.|..|.|.+++++.++++.|||+|-+
T Consensus 248 ~~Lv~aGvd~i~vd~a~----g~~--------~~~~~~i~~ir~~~~~~~~V~aGnV~t~e~a~~li~aGAd~I~v 311 (502)
T PRK07107 248 PALVEAGADVLCIDSSE----GYS--------EWQKRTLDWIREKYGDSVKVGAGNVVDREGFRYLAEAGADFVKV 311 (502)
T ss_pred HHHHHhCCCeEeecCcc----ccc--------HHHHHHHHHHHHhCCCCceEEeccccCHHHHHHHHHcCCCEEEE
Confidence 34556999999986211 211 11245677777766432357889999999999999999999866
|
|
| >PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder | Back alignment and domain information |
|---|
Probab=90.78 E-value=2.7 Score=37.18 Aligned_cols=82 Identities=16% Similarity=0.095 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHh-cCCCcEEEEeccCCCCCccHHHH
Q 020423 136 LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAA-NTNVPVSVKCRIGVDDHDSYNQL 214 (326)
Q Consensus 136 ~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~-~~~~pv~vK~r~g~~~~~~~~e~ 214 (326)
.+...+.|+...++|+|.||||.++-.+... ..+.+...+.+..+++.+++ ..+.|+++-..- . +.
T Consensus 18 ~~~a~~~a~~~~~~GAdiIDIg~~st~p~~~-----~v~~~eE~~rl~~~l~~i~~~~~~~plSIDT~~-------~-~v 84 (210)
T PF00809_consen 18 EDEAVKRAREQVEAGADIIDIGAESTRPGAT-----PVSEEEEMERLVPVLQAIREENPDVPLSIDTFN-------P-EV 84 (210)
T ss_dssp HHHHHHHHHHHHHTT-SEEEEESSTSSTTSS-----SSHHHHHHHHHHHHHHHHHHHHTTSEEEEEESS-------H-HH
T ss_pred HHHHHHHHHHHHHhcCCEEEecccccCCCCC-----cCCHHHHHHHHHHHHHHHhccCCCeEEEEECCC-------H-HH
Confidence 3556666888889999999999876443211 22333456788889999887 568899884211 1 22
Q ss_pred HHHHHHHhhhCCccEEEEec
Q 020423 215 CDFIYKVSSLSPTRHFIIHS 234 (326)
Q Consensus 215 ~~~ia~~le~~Gvd~I~v~~ 234 (326)
++ ..++. |++.|.-..
T Consensus 85 ~~---~aL~~-g~~~ind~~ 100 (210)
T PF00809_consen 85 AE---AALKA-GADIINDIS 100 (210)
T ss_dssp HH---HHHHH-TSSEEEETT
T ss_pred HH---HHHHc-CcceEEecc
Confidence 22 23443 888876543
|
It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B .... |
| >TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2 | Back alignment and domain information |
|---|
Probab=90.76 E-value=2.4 Score=40.36 Aligned_cols=113 Identities=11% Similarity=0.017 Sum_probs=63.2
Q ss_pred CCHHHHHHHHHHHHh-cCCCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccH
Q 020423 177 LDPKFVGEAMSVIAA-NTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKY 255 (326)
Q Consensus 177 ~r~~~l~eiv~avr~-~~~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~ 255 (326)
.+++...+. +.+|+ ..+.|+.+-+..........++..+ ..+..++|++.+|-.... .-.. ++.........
T Consensus 96 ~~~~~~~~~-~~vr~~~~~~p~i~nl~~~~~~~~~~~~~~~----~i~~i~adal~i~ln~~q-~~~~-p~g~~~f~~~l 168 (333)
T TIGR02151 96 KDPETADTF-EVVREEAPNGPLIANIGAPQLVEGGPEEAQE----AIDMIEADALAIHLNVLQ-ELVQ-PEGDRNFKGWL 168 (333)
T ss_pred cChhhHhHH-HHHHHhCCCCcEEeecCchhhccccHHHHHH----HHHHhcCCCEEEcCcccc-cccC-CCCCcCHHHHH
Confidence 467766555 77777 5688988765432111111333322 333445777777642110 0000 00000000012
Q ss_pred HHHHHHHhcCCCceEEE--eCCCCCHHHHHHHHHhCCChhhhhH
Q 020423 256 EYYYALLRDFPDLTFTL--NGGINTVDEVNAALRKGAHHVMVGR 297 (326)
Q Consensus 256 ~~i~~i~~~~~~iPVIa--~GgI~s~~da~~~l~~GaD~V~iGR 297 (326)
+.+..+++.. ++||+. +|.-.+.+.+..+.+.|+|+|-++-
T Consensus 169 e~i~~i~~~~-~vPVivK~~g~g~~~~~a~~L~~aGvd~I~Vsg 211 (333)
T TIGR02151 169 EKIAEICSQL-SVPVIVKEVGFGISKEVAKLLADAGVSAIDVAG 211 (333)
T ss_pred HHHHHHHHhc-CCCEEEEecCCCCCHHHHHHHHHcCCCEEEECC
Confidence 5566676664 899987 4555789999988899999998864
|
Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids. |
| >PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=90.76 E-value=14 Score=34.50 Aligned_cols=69 Identities=17% Similarity=0.166 Sum_probs=51.2
Q ss_pred CCCCcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEe
Q 020423 122 PEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKC 201 (326)
Q Consensus 122 ~~~~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~ 201 (326)
....|+++++.+ +.++-.+.++.++++|+|++-+-- |.. .+ ...+-+.+..++|.++++.|+.+=-
T Consensus 74 ~~~~pvi~gv~~-~t~~~i~~~~~a~~~Gadav~~~p--P~y--~~---------~~~~~i~~~f~~va~~~~lpi~lYn 139 (303)
T PRK03620 74 AGRVPVIAGAGG-GTAQAIEYAQAAERAGADGILLLP--PYL--TE---------APQEGLAAHVEAVCKSTDLGVIVYN 139 (303)
T ss_pred CCCCcEEEecCC-CHHHHHHHHHHHHHhCCCEEEECC--CCC--CC---------CCHHHHHHHHHHHHHhCCCCEEEEc
Confidence 445789999975 888999999999999999998832 321 11 1356677888888888899988854
Q ss_pred ccC
Q 020423 202 RIG 204 (326)
Q Consensus 202 r~g 204 (326)
+.+
T Consensus 140 ~~g 142 (303)
T PRK03620 140 RDN 142 (303)
T ss_pred CCC
Confidence 444
|
|
| >TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase | Back alignment and domain information |
|---|
Probab=90.76 E-value=10 Score=35.27 Aligned_cols=127 Identities=13% Similarity=0.119 Sum_probs=71.3
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHH
Q 020423 135 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQL 214 (326)
Q Consensus 135 ~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~ 214 (326)
+.+.+.+-.+.+.+.|+|+|-++...-.. +--+.+.|.+++..+++.+.. ..||.+.+.. .+++.
T Consensus 24 D~~~l~~li~~l~~~Gv~gi~v~GstGE~-------~~Lt~eEr~~v~~~~~~~~~g--~~pvi~gv~~------~t~~a 88 (296)
T TIGR03249 24 DEAAYRENIEWLLGYGLEALFAAGGTGEF-------FSLTPAEYEQVVEIAVSTAKG--KVPVYTGVGG------NTSDA 88 (296)
T ss_pred CHHHHHHHHHHHHhcCCCEEEECCCCcCc-------ccCCHHHHHHHHHHHHHHhCC--CCcEEEecCc------cHHHH
Confidence 67889999999999999999997532110 111122333444444443322 4688876531 23455
Q ss_pred HHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEE---eCCCCCHHHHHHHHH
Q 020423 215 CDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTL---NGGINTVDEVNAALR 287 (326)
Q Consensus 215 ~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa---~GgI~s~~da~~~l~ 287 (326)
++ .++..++.|+|.+.+.... +...+ ...-.+++.++.+. .++||+. .|--.+++.+.++.+
T Consensus 89 i~-~a~~a~~~Gadav~~~pP~--y~~~s-------~~~i~~~f~~v~~a-~~~pvilYn~~g~~l~~~~~~~La~ 153 (296)
T TIGR03249 89 IE-IARLAEKAGADGYLLLPPY--LINGE-------QEGLYAHVEAVCES-TDLGVIVYQRDNAVLNADTLERLAD 153 (296)
T ss_pred HH-HHHHHHHhCCCEEEECCCC--CCCCC-------HHHHHHHHHHHHhc-cCCCEEEEeCCCCCCCHHHHHHHHh
Confidence 55 4566788999999886432 11100 01124455566554 3788653 232346776666654
|
5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate. |
| >cd08207 RLP_NonPhot Ribulose bisphosphate carboxylase like proteins from nonphototrophic bacteria | Back alignment and domain information |
|---|
Probab=90.71 E-value=8.4 Score=37.76 Aligned_cols=144 Identities=19% Similarity=0.141 Sum_probs=91.5
Q ss_pred CCCcEEEEec----CCCHHHHHHHHHHHHHCCCCEEEe--cCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCc
Q 020423 123 EQHPIVLQIG----GSNLDNLAKATELANAYNYDEINL--NCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVP 196 (326)
Q Consensus 123 ~~~piivQL~----g~~~~~f~~aA~~a~~aG~d~Iei--n~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~p 196 (326)
.++|++..+. |-+++++++.+..+...|.|.|-= ++..+. =..+++|.+.+.+.++...+.+|..
T Consensus 141 ~~RPLigtiiKP~~Glsp~~~a~~~y~~~~GGvD~IKDDE~l~~q~---------~~p~~eRv~~~~~a~~~a~~eTG~~ 211 (406)
T cd08207 141 EDRPLIGTIIKPSVGLTPEETAALVRQLAAAGIDFIKDDELLANPP---------YSPLDERVRAVMRVINDHAQRTGRK 211 (406)
T ss_pred CCCceEEEecccccCCCHHHHHHHHHHHHhCCCCcccccccCCCCC---------CCcHHHHHHHHHHHHHHHHHhhCCc
Confidence 5789988875 567999999999999999888732 222111 1123467778888888887788776
Q ss_pred EEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEE----
Q 020423 197 VSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTL---- 272 (326)
Q Consensus 197 v~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa---- 272 (326)
...-..+. . +.+++.+.. +.+.+.|.+.+-+..... | +..+..++++ .++||.+
T Consensus 212 ~~y~~NiT--~--~~~em~~ra-~~~~~~G~~~~mv~~~~~---G-------------~~~l~~l~~~-~~l~IhaHra~ 269 (406)
T cd08207 212 VMYAFNIT--D--DIDEMRRNH-DLVVEAGGTCVMVSLNSV---G-------------LSGLAALRRH-SQLPIHGHRNG 269 (406)
T ss_pred ceEEEecC--C--CHHHHHHHH-HHHHHhCCCeEEEecccc---c-------------hHHHHHHHhc-CCceEEECCCc
Confidence 54433332 2 255555533 344568998887764321 1 5556666665 4888873
Q ss_pred eC--------CCCCHHHHHHHHH-hCCChhhhhHH
Q 020423 273 NG--------GINTVDEVNAALR-KGAHHVMVGRA 298 (326)
Q Consensus 273 ~G--------gI~s~~da~~~l~-~GaD~V~iGRa 298 (326)
.| ||.. .-.-++.+ .|+|.+.+++.
T Consensus 270 ~ga~~r~p~~Gis~-~vl~kl~RLaGaD~~~~~~~ 303 (406)
T cd08207 270 WGMLTRSPALGISF-QAYQKLWRLAGVDHLHVNGL 303 (406)
T ss_pred ceecccCCCCCCcH-HHHHHHHHHcCCCccccCCC
Confidence 34 4433 33455555 79999988664
|
Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions. The specific function of this subgroup is unknown. |
| >TIGR03586 PseI pseudaminic acid synthase | Back alignment and domain information |
|---|
Probab=90.71 E-value=11 Score=35.75 Aligned_cols=133 Identities=12% Similarity=0.126 Sum_probs=74.1
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecC-----------CCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEecc
Q 020423 135 NLDNLAKATELANAYNYDEINLNC-----------GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRI 203 (326)
Q Consensus 135 ~~~~f~~aA~~a~~aG~d~Iein~-----------g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~ 203 (326)
..+++.+..+.+++.|.+.+---+ ++|.-+ -|+.-+++..++..+- ..+.||.+|.-.
T Consensus 75 ~~e~~~~L~~~~~~~Gi~~~stpfd~~svd~l~~~~v~~~K------I~S~~~~n~~LL~~va-----~~gkPvilstG~ 143 (327)
T TIGR03586 75 PWEWHKELFERAKELGLTIFSSPFDETAVDFLESLDVPAYK------IASFEITDLPLIRYVA-----KTGKPIIMSTGI 143 (327)
T ss_pred CHHHHHHHHHHHHHhCCcEEEccCCHHHHHHHHHcCCCEEE------ECCccccCHHHHHHHH-----hcCCcEEEECCC
Confidence 346667777777777766654322 223211 2333345666655543 358999987444
Q ss_pred CCCCCccHHHHHHHHHHHhhhCCc-cEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHH
Q 020423 204 GVDDHDSYNQLCDFIYKVSSLSPT-RHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEV 282 (326)
Q Consensus 204 g~~~~~~~~e~~~~ia~~le~~Gv-d~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da 282 (326)
.+++|+...+ ..+.+.|. +.+.+|.-.. +. .+ ....+...+..+.+.+ ++||..+.=-....-.
T Consensus 144 -----~t~~Ei~~Av-~~i~~~g~~~i~LlhC~s~-YP--~~-----~~~~nL~~i~~lk~~f-~~pVG~SDHt~G~~~~ 208 (327)
T TIGR03586 144 -----ATLEEIQEAV-EACREAGCKDLVLLKCTSS-YP--AP-----LEDANLRTIPDLAERF-NVPVGLSDHTLGILAP 208 (327)
T ss_pred -----CCHHHHHHHH-HHHHHCCCCcEEEEecCCC-CC--CC-----cccCCHHHHHHHHHHh-CCCEEeeCCCCchHHH
Confidence 2455555533 34456777 5666785322 21 11 1234567777777666 8999777533233444
Q ss_pred HHHHHhCCChh
Q 020423 283 NAALRKGAHHV 293 (326)
Q Consensus 283 ~~~l~~GaD~V 293 (326)
..++..||+.+
T Consensus 209 ~aAva~GA~iI 219 (327)
T TIGR03586 209 VAAVALGACVI 219 (327)
T ss_pred HHHHHcCCCEE
Confidence 55556788743
|
|
| >COG3684 LacD Tagatose-1,6-bisphosphate aldolase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=90.70 E-value=5.7 Score=36.28 Aligned_cols=141 Identities=16% Similarity=0.101 Sum_probs=79.0
Q ss_pred HHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccH--------H
Q 020423 141 KATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSY--------N 212 (326)
Q Consensus 141 ~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~--------~ 212 (326)
-.|+|+++.|.|++-+-.- -|.|+= ---+.+..+++++.+..++ -++|+.+-.=.......+. .
T Consensus 115 isa~riK~~G~~avK~Lvy------~~~D~~-e~neqk~a~ierigsec~a-edi~f~lE~ltyd~~~~d~~eyak~kp~ 186 (306)
T COG3684 115 ISAKRIKEDGGDAVKFLVY------YRSDED-EINEQKLAYIERIGSECHA-EDLPFFLEPLTYDPRIGDKEEYAKRKPQ 186 (306)
T ss_pred hCHHHHHHhcccceEEEEE------EcCCch-HHhHHHHHHHHHHHHHhhh-cCCceeEeeeecCCCCCChHHHHhhchH
Confidence 3578999999999998642 223320 0012334455555555433 3788877643321111111 1
Q ss_pred HHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHh--cCCCce-EEEeCCCCCH---HHHHHHH
Q 020423 213 QLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLR--DFPDLT-FTLNGGINTV---DEVNAAL 286 (326)
Q Consensus 213 e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~--~~~~iP-VIa~GgI~s~---~da~~~l 286 (326)
.+.+ ..+.+.+.|+|.+-|.-.- +-.| ..-+......+ ...++| |+.+-||... +.+.-++
T Consensus 187 kV~~-a~k~fsd~GadvlKvevPv-yveG-----------e~~ea~~~f~~~~~~~~lP~i~LSAGV~~klF~~tv~fA~ 253 (306)
T COG3684 187 KVIE-AMKEFSDSGADVLKVEVPV-YVEG-----------EQEEAAAAFQRQNDHINLPWIYLSAGVSAKLFQRTVRFAM 253 (306)
T ss_pred HHHH-HHHHhccCCCceEEeecce-eccC-----------ccHHHHHHHHHhhcCCCCCeEEEecCccHHHhHHHHHHHH
Confidence 1222 3456667899999886322 1111 01233333332 234788 6778998643 4556667
Q ss_pred HhCCChhhhhHHHHhC
Q 020423 287 RKGAHHVMVGRAAYQN 302 (326)
Q Consensus 287 ~~GaD~V~iGRall~d 302 (326)
+.||++|.-||+.-++
T Consensus 254 eaGAsGvL~GRAtWa~ 269 (306)
T COG3684 254 EAGASGVLAGRATWAG 269 (306)
T ss_pred HcCCceeEechhhhhc
Confidence 7999999999998543
|
|
| >PRK09197 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=90.63 E-value=4.7 Score=38.55 Aligned_cols=156 Identities=10% Similarity=0.083 Sum_probs=94.0
Q ss_pred CCCcEEEEecCCCH--HHHHH-HH-------HHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhc
Q 020423 123 EQHPIVLQIGGSNL--DNLAK-AT-------ELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAAN 192 (326)
Q Consensus 123 ~~~piivQL~g~~~--~~f~~-aA-------~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~ 192 (326)
...|+++.|-|... -++.+ +. .++.++||+-|-+..+. -+++.+.++..++++... .
T Consensus 91 ~~VPValHLDHg~~~~~~~i~~ai~~g~~~v~~a~~~gftSVMiDgS~------------lpfEeNI~~TkevVe~Ah-~ 157 (350)
T PRK09197 91 YGVPVILHTDHCAKKLLPWIDGLLDAGEKHFAAGGKPLFSSHMIDLSE------------EPLEENIEICSKYLERMA-K 157 (350)
T ss_pred CCCCEEEECCCCCCcchHHHHHHHHhhHHHHHhcCCCCceeEEeeCCC------------CCHHHHHHHHHHHHHHHH-H
Confidence 45799999976533 22222 22 22233458888776431 123467888888887764 3
Q ss_pred CCCcEEEEecc--CCCC------------CccHHHHHHHHHHHhhhCCc----cEEEEecCCcccCCCCcCCcCCCCCcc
Q 020423 193 TNVPVSVKCRI--GVDD------------HDSYNQLCDFIYKVSSLSPT----RHFIIHSRKALLNGISPAENRTIPPLK 254 (326)
Q Consensus 193 ~~~pv~vK~r~--g~~~------------~~~~~e~~~~ia~~le~~Gv----d~I~v~~~~~~~~g~~~~~~~~~~~~~ 254 (326)
.+++|-.-+.. |.++ ..+.++..+| .++.|+ |.+-|+-++.. +-+.+ ..+.++
T Consensus 158 ~GvsVEaELG~Igg~Ed~~~~~~~~~~~~~TdPeeA~~F----v~~Tgv~~~~D~LAvaiGt~H-G~Yk~----~~p~Ld 228 (350)
T PRK09197 158 AGMTLEIELGVTGGEEDGVDNSHEDNSKLYTQPEDVLYA----YEALGKISGRFTIAASFGNVH-GVYKP----GNVKLR 228 (350)
T ss_pred cCCEEEEEEeccCCCcCCccccccccccccCCHHHHHHH----HHHhCCCCcceEEeeeccccc-CCcCC----CCCccC
Confidence 45555443321 1111 1234454444 345676 99999866641 11110 124467
Q ss_pred HHHHHHHHhcC--------CCceEEEeCCCCCH-HHHHHHHHhCCChhhhhHHHH
Q 020423 255 YEYYYALLRDF--------PDLTFTLNGGINTV-DEVNAALRKGAHHVMVGRAAY 300 (326)
Q Consensus 255 ~~~i~~i~~~~--------~~iPVIa~GgI~s~-~da~~~l~~GaD~V~iGRall 300 (326)
++.++++.+.. +++|++.=||-..+ +++.++++.|+.=|-+++.+-
T Consensus 229 ~e~L~~I~~~v~~~~~~~~~~vPLVLHGgSGipde~i~~ai~~GI~KINi~T~l~ 283 (350)
T PRK09197 229 PEILKDSQEYVSKKFGLPAKPFDFVFHGGSGSTLEEIREAVSYGVVKMNIDTDTQ 283 (350)
T ss_pred HHHHHHHHHHHHHhhCCCCCCCCEEEeCCCCCCHHHHHHHHHCCCeeEEeCcHHH
Confidence 88888887664 17999999998777 668889999988888887764
|
|
| >TIGR03326 rubisco_III ribulose bisphosphate carboxylase, type III | Back alignment and domain information |
|---|
Probab=90.61 E-value=9.2 Score=37.54 Aligned_cols=146 Identities=11% Similarity=0.029 Sum_probs=92.3
Q ss_pred CCCCcEEEEec----CCCHHHHHHHHHHHHHCCCCEEEec--CCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCC
Q 020423 122 PEQHPIVLQIG----GSNLDNLAKATELANAYNYDEINLN--CGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNV 195 (326)
Q Consensus 122 ~~~~piivQL~----g~~~~~f~~aA~~a~~aG~d~Iein--~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~ 195 (326)
-.++|++..+. |.+++++++.+..+...|.|.|-=. +..+. =..++.|.+.+.+.++...+++|.
T Consensus 141 v~~RPL~gtiiKP~~Glsp~~~a~~~~~~~~GGvD~IKDDE~l~~q~---------~~p~~eRv~~~~~a~~~a~~eTG~ 211 (412)
T TIGR03326 141 IKDRPLLGTVPKPKVGLSTEEHAKVAYELWSGGVDLLKDDENLTSQP---------FNRFEERVEKLYKVRDKVEAETGE 211 (412)
T ss_pred CCCCceEEeeccccccCChHHHHHHHHHHHhcCCceeecCCCCCCCC---------CccHHHHHHHHHHHHHHHHHHhCC
Confidence 35688888875 5679999999999999999988432 22111 122346778888888888788876
Q ss_pred cEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhc--CCCceEEE-
Q 020423 196 PVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRD--FPDLTFTL- 272 (326)
Q Consensus 196 pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~--~~~iPVIa- 272 (326)
....-..+. . ..+++.+. ++...+.|+..+-|..-.. | +..+..+++. ..++||.+
T Consensus 212 ~~~ya~NiT--~--~~~em~~r-a~~~~~~G~~~~mv~~~~~---G-------------~~~l~~l~~~~~~~~l~ih~H 270 (412)
T TIGR03326 212 RKEYLANIT--A--PVREMERR-AELVADLGGQYVMVDVVVC---G-------------WSALQYIRELTEDLGLAIHAH 270 (412)
T ss_pred cceEEEEec--C--CHHHHHHH-HHHHHHhCCCeEEEEeecc---c-------------hHHHHHHHHhhccCCeEEEEc
Confidence 644433332 1 24455553 3344568988887764321 1 4445555552 24788877
Q ss_pred -----------eCCCCCHHHHHHHHH-hCCChhhhhHH
Q 020423 273 -----------NGGINTVDEVNAALR-KGAHHVMVGRA 298 (326)
Q Consensus 273 -----------~GgI~s~~da~~~l~-~GaD~V~iGRa 298 (326)
.-||.. .-.-++.+ .|+|.+.+++.
T Consensus 271 ra~~ga~~~~~~~Gis~-~vl~kl~RLaGaD~~~~~t~ 307 (412)
T TIGR03326 271 RAMHAAFTRNPKHGISM-FALAKLYRLIGVDQLHTGTA 307 (412)
T ss_pred CCcccccccCCCCcCcH-HHHHHHHHHcCCCeeeeCCC
Confidence 225544 33555555 89999998876
|
Members of this protein family are the archaeal, single chain, type III form of ribulose bisphosphate carboxylase, or RuBisCO. Members act is a three-step pathway for conversion of the sugar moiety of AMP to two molecules of 3-phosphoglycerate. Many of these species use ADP-dependent sugar kinases, which form AMP, for glycolysis. |
| >cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid) | Back alignment and domain information |
|---|
Probab=90.60 E-value=14 Score=34.19 Aligned_cols=66 Identities=17% Similarity=0.240 Sum_probs=50.4
Q ss_pred CCCCcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC-CCcEEEE
Q 020423 122 PEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVK 200 (326)
Q Consensus 122 ~~~~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~-~~pv~vK 200 (326)
....|++++..+.+.++-.+.|+.++++|+|++-+.. |... . ...+-+.+..+.|.+++ +.|+.+=
T Consensus 68 ~~~~~viagv~~~~~~~ai~~a~~a~~~Gad~v~~~~--P~y~-------~----~~~~~i~~~~~~v~~a~~~lpi~iY 134 (288)
T cd00954 68 KGKVTLIAHVGSLNLKESQELAKHAEELGYDAISAIT--PFYY-------K----FSFEEIKDYYREIIAAAASLPMIIY 134 (288)
T ss_pred CCCCeEEeccCCCCHHHHHHHHHHHHHcCCCEEEEeC--CCCC-------C----CCHHHHHHHHHHHHHhcCCCCEEEE
Confidence 3456899999888899999999999999999999852 3311 1 12456777777887788 8998884
|
It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases. |
| >COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=90.58 E-value=1 Score=41.47 Aligned_cols=94 Identities=16% Similarity=0.190 Sum_probs=59.4
Q ss_pred HHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHH
Q 020423 183 GEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALL 262 (326)
Q Consensus 183 ~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~ 262 (326)
.+.++..|+. .|...|+-.- .++.+++.+ .+ ++|+|.|-+..-+ .+.+++..
T Consensus 175 ~~Av~~aR~~--~~~~~kIEVE---vesle~~~e----Al-~agaDiImLDNm~------------------~e~~~~av 226 (280)
T COG0157 175 TEAVRRARAA--APFTKKIEVE---VESLEEAEE----AL-EAGADIIMLDNMS------------------PEELKEAV 226 (280)
T ss_pred HHHHHHHHHh--CCCCceEEEE---cCCHHHHHH----HH-HcCCCEEEecCCC------------------HHHHHHHH
Confidence 3444444444 3554555542 234555443 33 4899999876432 12222222
Q ss_pred h---cCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhCCch
Q 020423 263 R---DFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 305 (326)
Q Consensus 263 ~---~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~dP~l 305 (326)
+ ...++-+=++||| +++.+.++..+|+|.+.+|..-..-|++
T Consensus 227 ~~l~~~~~~~lEaSGgI-t~~ni~~yA~tGVD~IS~galths~~~l 271 (280)
T COG0157 227 KLLGLAGRALLEASGGI-TLENIREYAETGVDVISVGALTHSAPAL 271 (280)
T ss_pred HHhccCCceEEEEeCCC-CHHHHHHHhhcCCCEEEeCccccCCccc
Confidence 2 2235778889999 8999999999999999999877776753
|
|
| >PRK07094 biotin synthase; Provisional | Back alignment and domain information |
|---|
Probab=90.52 E-value=3.8 Score=38.53 Aligned_cols=144 Identities=14% Similarity=0.017 Sum_probs=72.4
Q ss_pred HHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHHH
Q 020423 141 KATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYK 220 (326)
Q Consensus 141 ~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia~ 220 (326)
+.++.++++|+|.+.+++-+.++.... .++. -...+...+.++.+++ .|+++..-+-.|... ++.+++.+. .+
T Consensus 130 e~l~~Lk~aG~~~v~~glEs~~~~~~~--~i~~--~~s~~~~~~~i~~l~~-~Gi~v~~~~iiGlpg-et~ed~~~~-l~ 202 (323)
T PRK07094 130 EEYKAWKEAGADRYLLRHETADKELYA--KLHP--GMSFENRIACLKDLKE-LGYEVGSGFMVGLPG-QTLEDLADD-IL 202 (323)
T ss_pred HHHHHHHHcCCCEEEeccccCCHHHHH--HhCC--CCCHHHHHHHHHHHHH-cCCeecceEEEECCC-CCHHHHHHH-HH
Confidence 445678889999999877554322111 1111 0234555566666654 366665555555432 234454443 33
Q ss_pred HhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHH----HHHHHHhcCCC--ceEEEeCCCCCHHHHHHHHHhCCChhh
Q 020423 221 VSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYE----YYYALLRDFPD--LTFTLNGGINTVDEVNAALRKGAHHVM 294 (326)
Q Consensus 221 ~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~----~i~~i~~~~~~--iPVIa~GgI~s~~da~~~l~~GaD~V~ 294 (326)
.+.+.+++.+.+..-.+.. |. +.. ..++...+ .++..+--.++ ++..++=+-..++....++..||+.+|
T Consensus 203 ~l~~l~~~~v~~~~~~P~p-gT-pl~--~~~~~~~~~~~~~~a~~R~~lp~~~i~~~~~~~~~~~~~~~~~l~~Gan~~~ 278 (323)
T PRK07094 203 FLKELDLDMIGIGPFIPHP-DT-PLK--DEKGGSLELTLKVLALLRLLLPDANIPATTALGTLNPDGREKGLKAGANVVM 278 (323)
T ss_pred HHHhCCCCeeeeeccccCC-CC-Ccc--cCCCCCHHHHHHHHHHHHHhCcCCCCcccCCccccCchhHHHHHHcCCceec
Confidence 4556888888776443321 11 000 01111122 22222222333 555532222334556778889999888
Q ss_pred h
Q 020423 295 V 295 (326)
Q Consensus 295 i 295 (326)
.
T Consensus 279 ~ 279 (323)
T PRK07094 279 P 279 (323)
T ss_pred C
Confidence 5
|
|
| >cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain | Back alignment and domain information |
|---|
Probab=90.47 E-value=2.6 Score=39.95 Aligned_cols=108 Identities=13% Similarity=0.119 Sum_probs=63.5
Q ss_pred CCHHHHHHHHHHHHhcCC-CcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccH
Q 020423 177 LDPKFVGEAMSVIAANTN-VPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKY 255 (326)
Q Consensus 177 ~r~~~l~eiv~avr~~~~-~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~ 255 (326)
.+++.. +-.+.+|+..+ .|+.+-+-.......+.++..+ ..+..++|++.+|-........ + + ...++
T Consensus 95 ~~~e~~-~~~~~vr~~~~~~p~~~Nl~~~~~~~~~~~~~~~----~i~~~~adalel~l~~~q~~~~-~-~----~~~df 163 (326)
T cd02811 95 EDPELA-ESFTVVREAPPNGPLIANLGAVQLNGYGVEEARR----AVEMIEADALAIHLNPLQEAVQ-P-E----GDRDF 163 (326)
T ss_pred cChhhh-hHHHHHHHhCCCceEEeecCccccCCCCHHHHHH----HHHhcCCCcEEEeCcchHhhcC-C-C----CCcCH
Confidence 346655 67777777664 8887755442211123444333 3445578888887432100000 0 0 01123
Q ss_pred ----HHHHHHHhcCCCceEEE--eCCCCCHHHHHHHHHhCCChhhhh
Q 020423 256 ----EYYYALLRDFPDLTFTL--NGGINTVDEVNAALRKGAHHVMVG 296 (326)
Q Consensus 256 ----~~i~~i~~~~~~iPVIa--~GgI~s~~da~~~l~~GaD~V~iG 296 (326)
+.++.+++.. ++||+. +|--.+.+++..+.+.|+|+|.++
T Consensus 164 ~~~~~~i~~l~~~~-~vPVivK~~g~g~s~~~a~~l~~~Gvd~I~vs 209 (326)
T cd02811 164 RGWLERIEELVKAL-SVPVIVKEVGFGISRETAKRLADAGVKAIDVA 209 (326)
T ss_pred HHHHHHHHHHHHhc-CCCEEEEecCCCCCHHHHHHHHHcCCCEEEEC
Confidence 4566666654 899988 455578999999999999999874
|
Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway. |
| >cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases | Back alignment and domain information |
|---|
Probab=90.40 E-value=6.8 Score=36.38 Aligned_cols=83 Identities=14% Similarity=0.114 Sum_probs=52.6
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCc-cccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHH
Q 020423 135 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCF-GVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQ 213 (326)
Q Consensus 135 ~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~y-Ggsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e 213 (326)
+.+.+.+-++++.+.|.|+|=++.+. +++ --+.+.|.+++..+++.+. -+.||.+.+.. ++.+
T Consensus 19 D~~~l~~l~~~l~~~Gv~gi~v~Gst--------GE~~~Ls~eEr~~l~~~~~~~~~--~~~pvi~gv~~------~t~~ 82 (289)
T cd00951 19 DEDAYRAHVEWLLSYGAAALFAAGGT--------GEFFSLTPDEYAQVVRAAVEETA--GRVPVLAGAGY------GTAT 82 (289)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECcCC--------cCcccCCHHHHHHHHHHHHHHhC--CCCCEEEecCC------CHHH
Confidence 67889999999999999999997532 221 1122234444444554432 14788876532 2344
Q ss_pred HHHHHHHHhhhCCccEEEEec
Q 020423 214 LCDFIYKVSSLSPTRHFIIHS 234 (326)
Q Consensus 214 ~~~~ia~~le~~Gvd~I~v~~ 234 (326)
.++ .++..++.|+|.+.+..
T Consensus 83 ~i~-~a~~a~~~Gad~v~~~p 102 (289)
T cd00951 83 AIA-YAQAAEKAGADGILLLP 102 (289)
T ss_pred HHH-HHHHHHHhCCCEEEECC
Confidence 555 45566889999998854
|
The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate. |
| >PLN02979 glycolate oxidase | Back alignment and domain information |
|---|
Probab=90.40 E-value=3.7 Score=39.52 Aligned_cols=43 Identities=21% Similarity=0.287 Sum_probs=34.9
Q ss_pred CccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhh
Q 020423 252 PLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVG 296 (326)
Q Consensus 252 ~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iG 296 (326)
...|+.+..+++.. ++|||.= ||.+++|+..+++.|+|+|.++
T Consensus 209 ~ltW~dl~wlr~~~-~~PvivK-gV~~~~dA~~a~~~Gvd~I~Vs 251 (366)
T PLN02979 209 TLSWKDVQWLQTIT-KLPILVK-GVLTGEDARIAIQAGAAGIIVS 251 (366)
T ss_pred CCCHHHHHHHHhcc-CCCEEee-cCCCHHHHHHHHhcCCCEEEEC
Confidence 45688888877664 8997754 5679999999999999998874
|
|
| >PRK04147 N-acetylneuraminate lyase; Provisional | Back alignment and domain information |
|---|
Probab=90.33 E-value=6.6 Score=36.50 Aligned_cols=85 Identities=7% Similarity=-0.029 Sum_probs=52.0
Q ss_pred CHHHHHHHHHHHHH-CCCCEEEecCCCCCCcccCCCCc-cccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHH
Q 020423 135 NLDNLAKATELANA-YNYDEINLNCGCPSPKVAGHGCF-GVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYN 212 (326)
Q Consensus 135 ~~~~f~~aA~~a~~-aG~d~Iein~g~P~~~~~r~d~y-Ggsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~ 212 (326)
+.+.+.+-.+++.+ .|.++|=++.. ++++ --+.+.|.+++..+++.+.. .+||.+.+.. .+++
T Consensus 22 D~~~~~~li~~l~~~~Gv~gi~v~Gs--------tGE~~~Ls~eEr~~~~~~~~~~~~~--~~~viagvg~-----~~t~ 86 (293)
T PRK04147 22 DEQGLRRLVRFNIEKQGIDGLYVGGS--------TGEAFLLSTEEKKQVLEIVAEEAKG--KVKLIAQVGS-----VNTA 86 (293)
T ss_pred CHHHHHHHHHHHHhcCCCCEEEECCC--------ccccccCCHHHHHHHHHHHHHHhCC--CCCEEecCCC-----CCHH
Confidence 67889999999999 99999999752 1221 11122333343444443321 3677775432 2344
Q ss_pred HHHHHHHHHhhhCCccEEEEecC
Q 020423 213 QLCDFIYKVSSLSPTRHFIIHSR 235 (326)
Q Consensus 213 e~~~~ia~~le~~Gvd~I~v~~~ 235 (326)
+.++ .++..++.|+|.+.+...
T Consensus 87 ~ai~-~a~~a~~~Gad~v~v~~P 108 (293)
T PRK04147 87 EAQE-LAKYATELGYDAISAVTP 108 (293)
T ss_pred HHHH-HHHHHHHcCCCEEEEeCC
Confidence 5555 455667899999998753
|
|
| >cd08209 RLP_DK-MTP-1-P-enolase 2,3-diketo-5-methylthiopentyl-1-phosphate enolase | Back alignment and domain information |
|---|
Probab=90.32 E-value=9.7 Score=37.11 Aligned_cols=146 Identities=15% Similarity=0.107 Sum_probs=91.7
Q ss_pred CCCcEEEEec----CCCHHHHHHHHHHHHHCCCCEEEe--cCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCc
Q 020423 123 EQHPIVLQIG----GSNLDNLAKATELANAYNYDEINL--NCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVP 196 (326)
Q Consensus 123 ~~~piivQL~----g~~~~~f~~aA~~a~~aG~d~Iei--n~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~p 196 (326)
.++|++..+. |.+++++++.+..+...|.|.|-= ++..+. =.-++.|.+.+.+.++...+.+|..
T Consensus 122 ~~RPL~~tiiKP~~Glsp~~~a~~~y~~~~GGvD~IKDDE~l~~q~---------~~p~~eRv~a~~~a~~~a~~eTG~~ 192 (391)
T cd08209 122 HDRPLLMSIFKGVLGLDLDDLAEQLREQALGGVDLIKDDEILFDNP---------LAPALERIRACRPVLQEVYEQTGRR 192 (391)
T ss_pred CCCceEEeeeccccCCCHHHHHHHHHHHHhCCCCcccccccCCCCC---------CCCHHHHHHHHHHHHHHHHHhhCCc
Confidence 5789988875 568999999999999999888732 222111 1223467788888888888888776
Q ss_pred EEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhc-CCCceEEE---
Q 020423 197 VSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRD-FPDLTFTL--- 272 (326)
Q Consensus 197 v~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~-~~~iPVIa--- 272 (326)
...-..+. . +.+++.+.. +...+.|.+++-+.-... | |..+..+.+. ..++||.+
T Consensus 193 ~~ya~NiT--~--~~~em~~ra-~~~~~~G~~~~mv~~~~~---G-------------~~~l~~l~~~~~~~lpIhaHra 251 (391)
T cd08209 193 TLYAVNLT--G--PVFTLKEKA-RRLVEAGANALLFNVFAY---G-------------LDVLEALASDPEINVPIFAHPA 251 (391)
T ss_pred ceEEEEcC--C--CHHHHHHHH-HHHHHhCCCEEEEecccc---c-------------hHHHHHHHhcCcCCcEEEecCC
Confidence 54433332 1 245555543 344568998887764321 1 4445555553 12677773
Q ss_pred -eC--------CCCCHHHHHHHHH-hCCChhhhhHH
Q 020423 273 -NG--------GINTVDEVNAALR-KGAHHVMVGRA 298 (326)
Q Consensus 273 -~G--------gI~s~~da~~~l~-~GaD~V~iGRa 298 (326)
.| ||....-.-++.+ .|||.+.+++.
T Consensus 252 ~~ga~~~~~~~Gis~~~~l~kl~RLaGaD~~~~~~~ 287 (391)
T cd08209 252 FAGALYGSPDYGIAASVLLGTLMRLAGADAVLFPSP 287 (391)
T ss_pred cccccccCCCCCCcHHHHHHHHHHHcCCCccccCCc
Confidence 23 4433344556666 89999988775
|
Ribulose bisphosphate carboxylase like proteins (RLPs) similar to B. subtilis YkrW protein, have been identified as 2,3-diketo-5-methylthiopentyl-1-phosphate enolases. They catalyze the tautomerization of 2,3-diketo-5-methylthiopentane 1-phosphate (DK-MTP 1-P). This is an important step in the methionine salvage pathway in which 5-methylthio-D-ribose (MTR) derived from 5'-methylthioadenosine is converted to methionine. |
| >KOG4201 consensus Anthranilate synthase component II [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=90.31 E-value=1.9 Score=38.29 Aligned_cols=49 Identities=20% Similarity=0.327 Sum_probs=40.9
Q ss_pred CceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhCCchhHHhHHHhhhCC
Q 020423 267 DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGA 317 (326)
Q Consensus 267 ~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~dP~l~~~~i~~~~~~~ 317 (326)
++-+++-.||.|++|+..+-+.|+.+|.+|-.++..-+ +++.-..+++.
T Consensus 237 Dvilva~SGi~tpdDia~~q~~GV~avLVGEslmk~sD--p~k~i~eL~~r 285 (289)
T KOG4201|consen 237 DVILVALSGIFTPDDIAKYQKAGVKAVLVGESLMKQSD--PKKFIHELFGR 285 (289)
T ss_pred ceEEEeccCCCCHHHHHHHHHcCceEEEecHHHHhccC--HHHHHHHHhcc
Confidence 67889999999999999999999999999999998766 34445555554
|
|
| >TIGR01927 menC_gamma/gm+ o-succinylbenzoic acid (OSB) synthetase | Back alignment and domain information |
|---|
Probab=90.29 E-value=9.4 Score=35.82 Aligned_cols=126 Identities=10% Similarity=0.097 Sum_probs=67.3
Q ss_pred EEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCC
Q 020423 129 LQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDH 208 (326)
Q Consensus 129 vQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~ 208 (326)
..|...+++...+.+.. +.||..+-+..|- .+++.-.+.++++|+.++..+ +++......
T Consensus 105 ~~l~~~~~~~~~~~~~~--~~Gf~~~KiKvG~----------------~~~~~d~~~v~~vr~~~g~~~--~l~vDaN~~ 164 (307)
T TIGR01927 105 ALLPAGDPALLLLRSAK--AEGFRTFKWKVGV----------------GELAREGMLVNLLLEALPDKA--ELRLDANGG 164 (307)
T ss_pred eeccCCCHHHHHHHHHH--hCCCCEEEEEeCC----------------CChHHHHHHHHHHHHHcCCCC--eEEEeCCCC
Confidence 33444567766655554 6799999886431 124445677888888775323 334433332
Q ss_pred ccHHHHHHHHHHHhhh---CCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHH
Q 020423 209 DSYNQLCDFIYKVSSL---SPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAA 285 (326)
Q Consensus 209 ~~~~e~~~~ia~~le~---~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~ 285 (326)
-+.++..++ .+.+++ .++++|. .+ .+. .+.+.++.+. .++||.+.=.+.+..++.++
T Consensus 165 w~~~~A~~~-~~~l~~~~~~~i~~iE----qP------------~~~--~~~~~~l~~~-~~~Pia~dEs~~~~~d~~~~ 224 (307)
T TIGR01927 165 LSPDEAQQF-LKALDPNLRGRIAFLE----EP------------LPD--ADEMSAFSEA-TGTAIALDESLWELPQLADE 224 (307)
T ss_pred CCHHHHHHH-HHhcccccCCCceEEe----CC------------CCC--HHHHHHHHHh-CCCCEEeCCCcCChHHHHHH
Confidence 344455553 345565 5677764 00 011 1334444444 35666655556666666666
Q ss_pred HHhC-CChhh
Q 020423 286 LRKG-AHHVM 294 (326)
Q Consensus 286 l~~G-aD~V~ 294 (326)
++.+ +|.|+
T Consensus 225 ~~~~~~d~i~ 234 (307)
T TIGR01927 225 YGPGWRGALV 234 (307)
T ss_pred HhcCCCceEE
Confidence 6644 34443
|
This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are gamma proteobacteria and archaea. Many of the com-names of the proteins identified by the model are identified as O-succinylbenzoyl-CoA synthase in error. |
| >TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase | Back alignment and domain information |
|---|
Probab=90.21 E-value=16 Score=34.07 Aligned_cols=69 Identities=19% Similarity=0.162 Sum_probs=50.2
Q ss_pred CCCCcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEe
Q 020423 122 PEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKC 201 (326)
Q Consensus 122 ~~~~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~ 201 (326)
+...|+++++.. +.++-.+.++.++++|+|++-+.. |.-. . ...+-+.+-.+.|.++++.|+.+=-
T Consensus 72 ~g~~pvi~gv~~-~t~~ai~~a~~a~~~Gadav~~~p--P~y~-------~----~s~~~i~~~f~~v~~a~~~pvilYn 137 (296)
T TIGR03249 72 KGKVPVYTGVGG-NTSDAIEIARLAEKAGADGYLLLP--PYLI-------N----GEQEGLYAHVEAVCESTDLGVIVYQ 137 (296)
T ss_pred CCCCcEEEecCc-cHHHHHHHHHHHHHhCCCEEEECC--CCCC-------C----CCHHHHHHHHHHHHhccCCCEEEEe
Confidence 455789999864 688889999999999999998842 3311 1 2246677777778778889988754
Q ss_pred ccC
Q 020423 202 RIG 204 (326)
Q Consensus 202 r~g 204 (326)
+.|
T Consensus 138 ~~g 140 (296)
T TIGR03249 138 RDN 140 (296)
T ss_pred CCC
Confidence 444
|
5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate. |
| >TIGR00433 bioB biotin synthetase | Back alignment and domain information |
|---|
Probab=90.10 E-value=9.2 Score=35.31 Aligned_cols=150 Identities=13% Similarity=0.095 Sum_probs=77.8
Q ss_pred HHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHH
Q 020423 140 AKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIY 219 (326)
Q Consensus 140 ~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia 219 (326)
.+.++.++++|+|.|-+++- -.+...+. ... ....+...+.++.+++ .|+++..-+-.|.. ++.++..+.+
T Consensus 123 ~e~l~~Lk~aG~~~v~i~~E-~~~~~~~~--i~~--~~s~~~~~~ai~~l~~-~Gi~v~~~~i~Gl~--et~~d~~~~~- 193 (296)
T TIGR00433 123 PEQAKRLKDAGLDYYNHNLD-TSQEFYSN--IIS--THTYDDRVDTLENAKK-AGLKVCSGGIFGLG--ETVEDRIGLA- 193 (296)
T ss_pred HHHHHHHHHcCCCEEEEccc-CCHHHHhh--ccC--CCCHHHHHHHHHHHHH-cCCEEEEeEEEeCC--CCHHHHHHHH-
Confidence 45677899999999877654 22111111 110 0345555666666654 37777666555542 2445555533
Q ss_pred HHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccH-H---HHHHHHhcCCCceEEEeCCCC-CHHHHH-H-HHHhCCCh
Q 020423 220 KVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKY-E---YYYALLRDFPDLTFTLNGGIN-TVDEVN-A-ALRKGAHH 292 (326)
Q Consensus 220 ~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~-~---~i~~i~~~~~~iPVIa~GgI~-s~~da~-~-~l~~GaD~ 292 (326)
..+.+.|++.+.++.-.+.. |..- . ..++... + .+...+...++..|...|+=. ...+.. . ++..||+.
T Consensus 194 ~~l~~l~~~~i~l~~l~p~~-gT~l-~--~~~~~s~~~~~~~ia~~r~~lp~~~i~~~~~~~~~~~~~~~~~~l~~G~n~ 269 (296)
T TIGR00433 194 LALANLPPESVPINFLVKIK-GTPL-A--DNKELSADDALKTIALARIIMPKAEIRLAGGREVNMRELQQAMCFMAGANS 269 (296)
T ss_pred HHHHhCCCCEEEeeeeEEcC-CCcc-C--CCCCCCHHHHHHHHHHHHHHCCcceEEEeCCcchhhhhhHHHHHHHhcCce
Confidence 34566899988876443321 1110 0 1122222 2 222223334444454455432 222322 2 67789999
Q ss_pred hhhhHHHHhC
Q 020423 293 VMVGRAAYQN 302 (326)
Q Consensus 293 V~iGRall~d 302 (326)
+++|--+...
T Consensus 270 i~~g~~~~~~ 279 (296)
T TIGR00433 270 IFVGDYLTTT 279 (296)
T ss_pred EEEcCcccCC
Confidence 9988666554
|
Catalyzes the last step of the biotin biosynthesis pathway. |
| >TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II | Back alignment and domain information |
|---|
Probab=90.08 E-value=2.7 Score=39.54 Aligned_cols=90 Identities=16% Similarity=0.178 Sum_probs=62.1
Q ss_pred CHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHH
Q 020423 178 DPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEY 257 (326)
Q Consensus 178 r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~ 257 (326)
.++.+.+.++++|+.++.|+.+-+.... ....+.++ .+.+.|++.|.++.+. | .+.
T Consensus 46 ~~~~l~~~i~~~~~~t~~pfgvn~~~~~---~~~~~~~~----~~~~~~v~~v~~~~g~---------------p--~~~ 101 (307)
T TIGR03151 46 PPDVVRKEIRKVKELTDKPFGVNIMLLS---PFVDELVD----LVIEEKVPVVTTGAGN---------------P--GKY 101 (307)
T ss_pred CHHHHHHHHHHHHHhcCCCcEEeeecCC---CCHHHHHH----HHHhCCCCEEEEcCCC---------------c--HHH
Confidence 4888999999999888889888765421 12233322 2335899999875421 1 244
Q ss_pred HHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhh
Q 020423 258 YYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMV 295 (326)
Q Consensus 258 i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~i 295 (326)
+.++++. .+.|+. .+.+.+.+.++.+.|+|.|.+
T Consensus 102 i~~lk~~--g~~v~~--~v~s~~~a~~a~~~GaD~Ivv 135 (307)
T TIGR03151 102 IPRLKEN--GVKVIP--VVASVALAKRMEKAGADAVIA 135 (307)
T ss_pred HHHHHHc--CCEEEE--EcCCHHHHHHHHHcCCCEEEE
Confidence 5555443 677774 778999999999999999986
|
This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase. |
| >COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=90.04 E-value=4.1 Score=39.53 Aligned_cols=127 Identities=14% Similarity=0.138 Sum_probs=79.2
Q ss_pred HHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHH
Q 020423 140 AKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIY 219 (326)
Q Consensus 140 ~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia 219 (326)
.+-++++.+.|.|.+-|- |. +|++|-+..-++++++. |.-+..-++.......+++...+ ++
T Consensus 101 e~Fv~ka~~nGidvfRiF-----------DA-----lND~RNl~~ai~a~kk~-G~h~q~~i~YT~sPvHt~e~yv~-~a 162 (472)
T COG5016 101 EKFVEKAAENGIDVFRIF-----------DA-----LNDVRNLKTAIKAAKKH-GAHVQGTISYTTSPVHTLEYYVE-LA 162 (472)
T ss_pred HHHHHHHHhcCCcEEEec-----------hh-----ccchhHHHHHHHHHHhc-CceeEEEEEeccCCcccHHHHHH-HH
Confidence 345667888898887772 22 47888888888888764 32333223322223445555555 45
Q ss_pred HHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEe----CCCCCHHHHHHHHHhCCChhhh
Q 020423 220 KVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLN----GGINTVDEVNAALRKGAHHVMV 295 (326)
Q Consensus 220 ~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~----GgI~s~~da~~~l~~GaD~V~i 295 (326)
+.+.+.|+|.|++..-. |.. .|-..+++++.+++.. ++||-.- -|+ +.-...++++.|+|.+=-
T Consensus 163 kel~~~g~DSIciKDma----Gll------tP~~ayelVk~iK~~~-~~pv~lHtH~TsG~-a~m~ylkAvEAGvD~iDT 230 (472)
T COG5016 163 KELLEMGVDSICIKDMA----GLL------TPYEAYELVKAIKKEL-PVPVELHTHATSGM-AEMTYLKAVEAGVDGIDT 230 (472)
T ss_pred HHHHHcCCCEEEeeccc----ccC------ChHHHHHHHHHHHHhc-CCeeEEecccccch-HHHHHHHHHHhCcchhhh
Confidence 56677999999986533 211 1223488888888776 7998764 344 334456677789998754
Q ss_pred h
Q 020423 296 G 296 (326)
Q Consensus 296 G 296 (326)
+
T Consensus 231 A 231 (472)
T COG5016 231 A 231 (472)
T ss_pred h
Confidence 4
|
|
| >PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=89.98 E-value=7.4 Score=36.42 Aligned_cols=83 Identities=14% Similarity=0.126 Sum_probs=51.5
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCc-cccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHH
Q 020423 135 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCF-GVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQ 213 (326)
Q Consensus 135 ~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~y-Ggsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e 213 (326)
+.+.+.+-.+.+.+.|.|||=++... +++ --+.+.|.+++..+++.+.. +.||.+.+.. ++.+
T Consensus 26 D~~~l~~li~~l~~~Gv~Gi~~~Gst--------GE~~~Lt~eEr~~~~~~~~~~~~~--~~pvi~gv~~------~t~~ 89 (303)
T PRK03620 26 DEAAYREHLEWLAPYGAAALFAAGGT--------GEFFSLTPDEYSQVVRAAVETTAG--RVPVIAGAGG------GTAQ 89 (303)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECcCC--------cCcccCCHHHHHHHHHHHHHHhCC--CCcEEEecCC------CHHH
Confidence 67889999999999999999997532 221 11122333444444443321 4788876531 2345
Q ss_pred HHHHHHHHhhhCCccEEEEec
Q 020423 214 LCDFIYKVSSLSPTRHFIIHS 234 (326)
Q Consensus 214 ~~~~ia~~le~~Gvd~I~v~~ 234 (326)
.++ .++..++.|+|.+.+..
T Consensus 90 ~i~-~~~~a~~~Gadav~~~p 109 (303)
T PRK03620 90 AIE-YAQAAERAGADGILLLP 109 (303)
T ss_pred HHH-HHHHHHHhCCCEEEECC
Confidence 555 35566789999998864
|
|
| >PRK14567 triosephosphate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=89.91 E-value=6.9 Score=35.81 Aligned_cols=44 Identities=9% Similarity=0.174 Sum_probs=37.9
Q ss_pred CceEEEeCCCCCHHHHHHHHHhC-CChhhhhHHHHhCCchhHHhHHH
Q 020423 267 DLTFTLNGGINTVDEVNAALRKG-AHHVMVGRAAYQNPWYTLGHVDT 312 (326)
Q Consensus 267 ~iPVIa~GgI~s~~da~~~l~~G-aD~V~iGRall~dP~l~~~~i~~ 312 (326)
+++|+..|+| +++.+.++++.+ +|++.||++.| +|+-|...++.
T Consensus 202 ~v~IlYGGSV-~~~N~~~l~~~~diDG~LVGgasL-~~~~F~~Ii~~ 246 (253)
T PRK14567 202 NIKIVYGGSL-KAENAKDILSLPDVDGGLIGGASL-KAAEFNEIINQ 246 (253)
T ss_pred cceEEEcCcC-CHHHHHHHHcCCCCCEEEeehhhh-cHHHHHHHHHH
Confidence 6899999999 999999999965 99999999998 66557777654
|
|
| >PF00697 PRAI: N-(5'phosphoribosyl)anthranilate (PRA) isomerase; InterPro: IPR001240 Indole-3-glycerol phosphate synthase (IGPS) (see IPR001468 from INTERPRO) catalyzes the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate | Back alignment and domain information |
|---|
Probab=89.90 E-value=1.4 Score=38.67 Aligned_cols=123 Identities=16% Similarity=0.272 Sum_probs=66.1
Q ss_pred HHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHH
Q 020423 139 LAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFI 218 (326)
Q Consensus 139 f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~i 218 (326)
..+..+.+.+++.|.|.+|..- -.+..+.++. +.|+.-.++...+.. ..+
T Consensus 60 ~~~I~~~~~~~~ld~vQLHG~e---------------------~~e~~~~l~~--~~~vi~~~~v~~~~~-~~~------ 109 (197)
T PF00697_consen 60 PEEILEIVEELGLDVVQLHGDE---------------------SPEYIKLLRA--GLPVIKAIHVDKDID-LLD------ 109 (197)
T ss_dssp HHHHHHHHHHCTESEEEE-SGG----------------------HHHHHHHHT--TSEEEEEEEESSCHS-CCH------
T ss_pred HHHHHHHHHHcCCCEEEECCCC---------------------CHHHHHHhhc--CceEEEEEEeCCccc-hHH------
Confidence 4455567889999999998521 1122333332 467777777653221 111
Q ss_pred HHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHH-hCCChhhhhH
Q 020423 219 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGR 297 (326)
Q Consensus 219 a~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~-~GaD~V~iGR 297 (326)
.......+|++-+.+..+ |. + ...+|+.+.++.+.....|++.+||| +++.+.++++ .+..+|=+.+
T Consensus 110 -~~~~~~~~d~~LlD~~~G---gt-G------~~~dw~~~~~~~~~~~~~p~iLAGGl-~p~NV~~ai~~~~p~gvDvsS 177 (197)
T PF00697_consen 110 -YLERYESVDYFLLDSGSG---GT-G------KTFDWSLLKKIVESYSPKPVILAGGL-NPENVREAIRQVRPYGVDVSS 177 (197)
T ss_dssp -HCHCSTT-SEEEEESSST---SS-S------S---GGGGCCCHHT-GTSTEEEESS---TTTHHHHHHHC--SEEEESG
T ss_pred -HHHhcccccEEeEccCCC---cC-C------cccCHHHhhhhhhhcccCcEEEEcCC-ChHHHHHHHHhcCceEEEeCC
Confidence 111122348988884321 11 1 12346666555554347899999999 7888888888 6666666665
Q ss_pred HHHhCC
Q 020423 298 AAYQNP 303 (326)
Q Consensus 298 all~dP 303 (326)
+.=.+|
T Consensus 178 GvE~~p 183 (197)
T PF00697_consen 178 GVETSP 183 (197)
T ss_dssp GGEEET
T ss_pred ccccCC
Confidence 554433
|
In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyzes N-(5-phosphoribosyl)anthranilate isomerase (PRAI) activity, the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (GATase) N-terminal domain (see IPR000991 from INTERPRO). Phosphoribosylanthranilate isomerase (PRAI) is monomeric and labile in most mesophilic microorganisms, but dimeric and stable in the hyperthermophile Thermotoga maritima (tPRAI) []. The comparison to the known 2.0 A structure of PRAI from Escherichia coli (ePRAI) shows that tPRAI has the complete TIM- or (beta alp ha)8-barrel fold, whereas helix alpha5 in ePRAI is replaced by a loop. The subunits of tPRAI associate via the N-terminal faces of their central beta-barrels. Two long, symmetry-related loops that protrude reciprocally into cavities of the other subunit provide for multiple hydrophobic interactions. Moreover, the side chains of the N-terminal methionines and the C-terminal leucines of both subunits are immobilized in a hydrophobic cluster, and the number of salt bridges is increased in tPRAI. These features appear to be mainly responsible for the high thermostability of tPRAI []. ; GO: 0004640 phosphoribosylanthranilate isomerase activity, 0006568 tryptophan metabolic process; PDB: 1V5X_A 1PII_A 1JCM_P 2KZH_A 1LBM_A 1DL3_A 1NSJ_A. |
| >COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=89.90 E-value=17 Score=34.02 Aligned_cols=71 Identities=14% Similarity=0.118 Sum_probs=53.0
Q ss_pred CCCCCcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEE
Q 020423 121 SPEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVK 200 (326)
Q Consensus 121 ~~~~~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK 200 (326)
.....|++++..+++.++-.+.++.+++.|+|++-+-- |.- +. ...+-+.+-.++|.++++.|+.+=
T Consensus 70 ~~grvpviaG~g~~~t~eai~lak~a~~~Gad~il~v~--PyY-~k----------~~~~gl~~hf~~ia~a~~lPvilY 136 (299)
T COG0329 70 VGGRVPVIAGVGSNSTAEAIELAKHAEKLGADGILVVP--PYY-NK----------PSQEGLYAHFKAIAEAVDLPVILY 136 (299)
T ss_pred HCCCCcEEEecCCCcHHHHHHHHHHHHhcCCCEEEEeC--CCC-cC----------CChHHHHHHHHHHHHhcCCCEEEE
Confidence 33446899999999999999999999999999998842 332 11 124567777778878889998876
Q ss_pred eccC
Q 020423 201 CRIG 204 (326)
Q Consensus 201 ~r~g 204 (326)
=.++
T Consensus 137 N~P~ 140 (299)
T COG0329 137 NIPS 140 (299)
T ss_pred eCcc
Confidence 5443
|
|
| >TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2 | Back alignment and domain information |
|---|
Probab=89.81 E-value=6.8 Score=37.35 Aligned_cols=155 Identities=9% Similarity=0.132 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHHHCCCCEEEecCCCC--C-----CcccCCCCccccccCCH----HHHHHHHHHHHh-cCCCcEEEEecc
Q 020423 136 LDNLAKATELANAYNYDEINLNCGCP--S-----PKVAGHGCFGVSLMLDP----KFVGEAMSVIAA-NTNVPVSVKCRI 203 (326)
Q Consensus 136 ~~~f~~aA~~a~~aG~d~Iein~g~P--~-----~~~~r~d~yGgsl~~r~----~~l~eiv~avr~-~~~~pv~vK~r~ 203 (326)
.+...+..+.+.++||.+|++..=.+ . +...+..+ ..++.|.. .-+.++++.+++ ..+.|+.+.+..
T Consensus 65 ~~~~~~~~~~~~~~G~Gavv~kTvt~~p~~gn~~Pr~~~~~~-~~~~iN~~Gl~n~G~~~~l~~i~~~~~~~~i~vsi~~ 143 (335)
T TIGR01036 65 FDKDGEAIDALGAMGFGFLEIGTVTPKPQPGNPRPRLFRLIE-DEALINRMGFNNHGADVLVERLKRARYKGPIGINIGK 143 (335)
T ss_pred cCCCHHHHHHHHhcCCCEEEeCCcCCCCCCCCCCCCEEECcc-ccccccCCCCCChhHHHHHHHHhhccCCCcEEEEEeC
Confidence 44566677788888999999964322 1 11111111 12223322 224445555544 335777776643
Q ss_pred CC--CCCccHHHHHHHHHHHhhhCCccEEEEe--cCCcccCCCCcCCcCCCCCccHHHHHHHHhcC------CCceEEEe
Q 020423 204 GV--DDHDSYNQLCDFIYKVSSLSPTRHFIIH--SRKALLNGISPAENRTIPPLKYEYYYALLRDF------PDLTFTLN 273 (326)
Q Consensus 204 g~--~~~~~~~e~~~~ia~~le~~Gvd~I~v~--~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~------~~iPVIa~ 273 (326)
.. ......+|..+.+.+ +.+ .+|+|.+. .... .+.... ..+....+.++.+++.. .++||++=
T Consensus 144 ~~~~~~~~~~~dy~~~~~~-~~~-~ad~iElNlScPn~--~~~~~~---~~~~~~~~i~~~V~~~~~~~~~~~~~Pv~vK 216 (335)
T TIGR01036 144 NKDTPSEDAKEDYAACLRK-LGP-LADYLVVNVSSPNT--PGLRDL---QYKAELRDLLTAVKQEQDGLRRVHRVPVLVK 216 (335)
T ss_pred CCCCCcccCHHHHHHHHHH-Hhh-hCCEEEEEccCCCC--CCcccc---cCHHHHHHHHHHHHHHHHhhhhccCCceEEE
Confidence 31 122235555543332 332 48999873 2221 121110 11111123334443322 13898763
Q ss_pred --CCCC--CHHHHHH-HHHhCCChhhhhHH
Q 020423 274 --GGIN--TVDEVNA-ALRKGAHHVMVGRA 298 (326)
Q Consensus 274 --GgI~--s~~da~~-~l~~GaD~V~iGRa 298 (326)
-.+. +..++.+ +.+.|+|+|.+---
T Consensus 217 LsP~~~~~~i~~ia~~~~~~GadGi~l~NT 246 (335)
T TIGR01036 217 IAPDLTESDLEDIADSLVELGIDGVIATNT 246 (335)
T ss_pred eCCCCCHHHHHHHHHHHHHhCCcEEEEECC
Confidence 3343 2344334 44589999986543
|
The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region. |
| >TIGR01520 FruBisAldo_II_A fructose-bisphosphate aldolase, class II, yeast/E | Back alignment and domain information |
|---|
Probab=89.75 E-value=10 Score=36.37 Aligned_cols=160 Identities=14% Similarity=0.132 Sum_probs=93.4
Q ss_pred CCCcEEEEecCCCHH--HHHHHHHHH-----HHCC---CCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhc
Q 020423 123 EQHPIVLQIGGSNLD--NLAKATELA-----NAYN---YDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAAN 192 (326)
Q Consensus 123 ~~~piivQL~g~~~~--~f~~aA~~a-----~~aG---~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~ 192 (326)
...|+++.|-|.... ++.+.|..+ ...| |+-|-+-.+. . .++.+.+..+++++... .
T Consensus 98 a~VPValHLDHg~~~~~~~i~~ai~ag~~~~~~~g~~gftSVMiDgS~-l-----------pfeENI~~TrevVe~Ah-~ 164 (357)
T TIGR01520 98 YGVPVVLHTDHCAKKLLPWVDGLLEAGEKYFSAHGKPLFSSHMIDLSE-E-----------PIEENIEICVKYLKRMA-K 164 (357)
T ss_pred CCCCEEEECCCCCCcchHHHHHHHHhhhhhhhhcCCCCCceEEeeCCC-C-----------CHHHHHHHHHHHHHHHH-H
Confidence 457999999765322 333333322 2233 8888876431 1 23367788888887753 3
Q ss_pred CCCcEEEEecc--CCCC------------CccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHH
Q 020423 193 TNVPVSVKCRI--GVDD------------HDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYY 258 (326)
Q Consensus 193 ~~~pv~vK~r~--g~~~------------~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i 258 (326)
.++.|-.-+-. |.++ ..+.++..+|+.+.-.+.|+|.+-++=++.. +-+.+ ..+.++++.+
T Consensus 165 ~GvsVEaELG~vgG~Ed~~~~~~~~~~~~yTdPeeA~~Fv~~t~~~TgvD~LAvAiGT~H-G~Yk~----~~p~Ld~d~L 239 (357)
T TIGR01520 165 IKMWLEIEIGITGGEEDGVDNSHMDAEALYTQPEDVYYAYEELSKISPNFSIAAAFGNVH-GVYKP----GNVKLTPDIL 239 (357)
T ss_pred cCCEEEEEecccCCccCCcccccccccccCCCHHHHHHHHHHhccCCCcceeeeeecccc-CCcCC----CCCccCHHHH
Confidence 45554443321 1111 1234555554433211238999998866541 11100 1244678888
Q ss_pred HHHH---hcCCCce------EEEeCCCCCH-HHHHHHHHhCCChhhhhHHHH
Q 020423 259 YALL---RDFPDLT------FTLNGGINTV-DEVNAALRKGAHHVMVGRAAY 300 (326)
Q Consensus 259 ~~i~---~~~~~iP------VIa~GgI~s~-~da~~~l~~GaD~V~iGRall 300 (326)
+++. ++.+++| ++.=||-..+ +++.++++.|..=|-+++.+-
T Consensus 240 ~~I~~~~~~~~~vP~~~~~pLVLHGgSGi~~e~i~kai~~GI~KINi~Tdl~ 291 (357)
T TIGR01520 240 ADGQEYVSEKLGLPAAKPLFFVFHGGSGSTKQEIKEALSYGVVKMNIDTDTQ 291 (357)
T ss_pred HHHHHHHHHhcCCCcCCCCcEEEeCCCCCCHHHHHHHHHCCCeEEEeCcHHH
Confidence 8873 2234777 9998887776 779999999988888888764
|
coli subtype. This model represents one of two deeply split, architecturally distinct clades of the family that includes class II fructose-bisphosphate aldolases, tagatose-bisphosphate aldolases, and related uncharacterized proteins. This family is well-conserved and includes characterized FBA from Saccharomyces cerevisiae, Escherichia coli, and Corynebacterium glutamicum. Proteins outside the scope of this model may also be designated as class II fructose-bisphosphate aldolases, but are well separated in an alignment-based phylogenetic tree. |
| >PLN02495 oxidoreductase, acting on the CH-CH group of donors | Back alignment and domain information |
|---|
Probab=89.72 E-value=3.8 Score=39.82 Aligned_cols=113 Identities=8% Similarity=-0.059 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHhcC-CCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCccc---CCCCcCCcCCCCCccH
Q 020423 180 KFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALL---NGISPAENRTIPPLKY 255 (326)
Q Consensus 180 ~~l~eiv~avr~~~-~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~---~g~~~~~~~~~~~~~~ 255 (326)
+...+.+..+++.. +.|+++.+..+. +.++..+ +++.+++.|+|+|.+.-.-+.. .+.... . ...+...
T Consensus 98 ~~~l~~i~~~k~~~~~~pvIaSi~~~~----s~~~~~~-~a~~~e~~GaD~iELNiSCPn~~~~r~~g~~-~-gq~~e~~ 170 (385)
T PLN02495 98 ETMLAEFKQLKEEYPDRILIASIMEEY----NKDAWEE-IIERVEETGVDALEINFSCPHGMPERKMGAA-V-GQDCDLL 170 (385)
T ss_pred HHHHHHHHHHHhhCCCCcEEEEccCCC----CHHHHHH-HHHHHHhcCCCEEEEECCCCCCCCcCccchh-h-ccCHHHH
Confidence 33333345566665 679999764422 2334444 4456678999999984321110 110000 0 0011111
Q ss_pred -HHHHHHHhcCCCceEEE--eCCCCCHHHHHH-HHHhCCChhhhhHHHH
Q 020423 256 -EYYYALLRDFPDLTFTL--NGGINTVDEVNA-ALRKGAHHVMVGRAAY 300 (326)
Q Consensus 256 -~~i~~i~~~~~~iPVIa--~GgI~s~~da~~-~l~~GaD~V~iGRall 300 (326)
+.+..+ ++..++||++ +-.+.+...+.+ +.+.|||+|.+--.+.
T Consensus 171 ~~i~~~V-k~~~~iPv~vKLsPn~t~i~~ia~aa~~~Gadgi~liNT~~ 218 (385)
T PLN02495 171 EEVCGWI-NAKATVPVWAKMTPNITDITQPARVALKSGCEGVAAINTIM 218 (385)
T ss_pred HHHHHHH-HHhhcCceEEEeCCChhhHHHHHHHHHHhCCCEEEEecccC
Confidence 222333 3445889876 456666766665 4458999998765544
|
|
| >cd00946 FBP_aldolase_IIA Class II Type A, Fructose-1,6-bisphosphate (FBP) aldolases | Back alignment and domain information |
|---|
Probab=89.55 E-value=9.8 Score=36.43 Aligned_cols=161 Identities=16% Similarity=0.155 Sum_probs=95.2
Q ss_pred CCCCcEEEEecCCCH------HHHH----HHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHh
Q 020423 122 PEQHPIVLQIGGSNL------DNLA----KATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAA 191 (326)
Q Consensus 122 ~~~~piivQL~g~~~------~~f~----~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~ 191 (326)
....|+++.|-|... +... +..+++.+.||+-|-+..+. . .++.+.+..+++++...
T Consensus 85 ~~~VPValHLDHg~~~~~~~~~~~~~a~~~~~~~a~~~GftSVMiDgS~-l-----------p~eENI~~TkevVe~Ah- 151 (345)
T cd00946 85 HYGVPVVLHTDHCAKKLLPWFDGLLEADEEYFKQHGEPLFSSHMLDLSE-E-----------PLEENIEICKKYLERMA- 151 (345)
T ss_pred HCCCCEEEECCCCCCccchhhHHHHHHHHHHHHHhccCCCceEEeeCCC-C-----------CHHHHHHHHHHHHHHHH-
Confidence 346799999976432 2111 12234557799999887542 1 23367788888887763
Q ss_pred cCCCcEEEEecc--CCCC------------CccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHH
Q 020423 192 NTNVPVSVKCRI--GVDD------------HDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEY 257 (326)
Q Consensus 192 ~~~~pv~vK~r~--g~~~------------~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~ 257 (326)
..++.|-.-+-. |.++ ..+.++..+|+.+.-...|+|.+-++-++.. +-+.+ ..+.++++.
T Consensus 152 ~~gvsVEaElG~igg~ed~~~~~~~~~~~~yTdPeeA~~Fv~~t~~~tgvD~LAvaiGt~H-G~Y~~----~~p~L~~~~ 226 (345)
T cd00946 152 KINMWLEMEIGITGGEEDGVDNSGVDNAELYTQPEDVWYVYEALSKISPNFSIAAAFGNVH-GVYKP----GNVKLQPEI 226 (345)
T ss_pred HcCCEEEEEecccCCcccCcccccccccccCCCHHHHHHHHHHhccCCCceeeeeeccccc-cCCCC----CCCccCHHH
Confidence 345554443321 1111 1235555554433211138999998766541 11110 124467888
Q ss_pred HHHH----HhcC-----CCceEEEeCCCCCH-HHHHHHHHhCCChhhhhHHHH
Q 020423 258 YYAL----LRDF-----PDLTFTLNGGINTV-DEVNAALRKGAHHVMVGRAAY 300 (326)
Q Consensus 258 i~~i----~~~~-----~~iPVIa~GgI~s~-~da~~~l~~GaD~V~iGRall 300 (326)
++++ .+.. .++|++.=||-..+ +++.++++.|..=|=++|.+-
T Consensus 227 L~~I~~~i~~~~~~~~~~~ipLVLHGgSG~~~e~i~kai~~GI~KiNi~T~l~ 279 (345)
T cd00946 227 LGEHQDYVREKLGLADDKPLYFVFHGGSGSTKEEIREAISYGVVKMNIDTDTQ 279 (345)
T ss_pred HHHHHHHHHHhhccccCCCCCEEEeCCCCCCHHHHHHHHHcCCeeEEeCcHHH
Confidence 8877 4343 26899999987766 568889999988888887764
|
The enzyme catalyses the zinc-dependent, reversible aldol condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to form fructose-1,6-bisphosphate. FBP aldolase is homodimeric and used in gluconeogenesis and glycolysis. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures. |
| >cd00452 KDPG_aldolase KDPG and KHG aldolase | Back alignment and domain information |
|---|
Probab=89.48 E-value=2.8 Score=36.33 Aligned_cols=69 Identities=20% Similarity=0.238 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCC
Q 020423 211 YNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGA 290 (326)
Q Consensus 211 ~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~Ga 290 (326)
.++..+ +++.+.+.|++.|.+.-.+. ...+.+..+.+.+++ ..++.|.|.+.+++..+++.||
T Consensus 15 ~~~~~~-~~~~l~~~G~~~vev~~~~~---------------~~~~~i~~l~~~~~~-~~iGag~v~~~~~~~~a~~~Ga 77 (190)
T cd00452 15 AEDALA-LAEALIEGGIRAIEITLRTP---------------GALEAIRALRKEFPE-ALIGAGTVLTPEQADAAIAAGA 77 (190)
T ss_pred HHHHHH-HHHHHHHCCCCEEEEeCCCh---------------hHHHHHHHHHHHCCC-CEEEEEeCCCHHHHHHHHHcCC
Confidence 344444 34455579999999875431 124567777777654 4588999999999999999999
Q ss_pred Chhhhh
Q 020423 291 HHVMVG 296 (326)
Q Consensus 291 D~V~iG 296 (326)
|++..+
T Consensus 78 ~~i~~p 83 (190)
T cd00452 78 QFIVSP 83 (190)
T ss_pred CEEEcC
Confidence 999865
|
This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources. |
| >cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP) | Back alignment and domain information |
|---|
Probab=89.31 E-value=5.4 Score=34.86 Aligned_cols=113 Identities=15% Similarity=0.209 Sum_probs=57.6
Q ss_pred HHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC-CCcEEEEeccCCCCCccHHHHHHHHHH
Q 020423 142 ATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFIYK 220 (326)
Q Consensus 142 aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~-~~pv~vK~r~g~~~~~~~~e~~~~ia~ 220 (326)
.++.+.++|+|.|-+-+-.+.+ | | -.++.+.++.+.++... .++|.+ + ++.+++. +
T Consensus 11 d~~~a~~~Gvd~ig~i~~~~s~---R---~-----v~~~~a~~l~~~~~~~~~~V~v~v------n--~~~~~i~----~ 67 (203)
T cd00405 11 DALAAAEAGADAIGFIFAPKSP---R---Y-----VSPEQAREIVAALPPFVKRVGVFV------N--EDLEEIL----E 67 (203)
T ss_pred HHHHHHHcCCCEEEEecCCCCC---C---C-----CCHHHHHHHHHhCCCCCcEEEEEe------C--CCHHHHH----H
Confidence 4566778899999997533221 1 0 23555556555543311 222322 1 1233333 3
Q ss_pred HhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHH--HHHHhCCChhhh
Q 020423 221 VSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVN--AALRKGAHHVMV 295 (326)
Q Consensus 221 ~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~--~~l~~GaD~V~i 295 (326)
+..+.|+|.|++|+.+. .+.+.++++.. ..+++-+=++.+..+.. +....++|.+.+
T Consensus 68 ia~~~~~d~Vqlhg~e~-----------------~~~~~~l~~~~-~~~~i~~i~~~~~~~~~~~~~~~~~aD~il~ 126 (203)
T cd00405 68 IAEELGLDVVQLHGDES-----------------PEYCAQLRARL-GLPVIKAIRVKDEEDLEKAAAYAGEVDAILL 126 (203)
T ss_pred HHHhcCCCEEEECCCCC-----------------HHHHHHHHhhc-CCcEEEEEecCChhhHHHhhhccccCCEEEE
Confidence 44568999999997431 22334444332 44444333444444433 233367888754
|
Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes. |
| >cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily | Back alignment and domain information |
|---|
Probab=89.29 E-value=8.3 Score=34.81 Aligned_cols=140 Identities=19% Similarity=0.140 Sum_probs=74.1
Q ss_pred HHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHH
Q 020423 140 AKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIY 219 (326)
Q Consensus 140 ~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia 219 (326)
.+.++++.++|+|.|.+-+......... .++.+.+...+.+.+.++.+++ .+..+.+-+..-..-..+.+++.+ +.
T Consensus 77 ~~~i~~a~~~g~~~i~i~~~~s~~~~~~--~~~~~~~~~~~~~~~~i~~a~~-~G~~v~~~~~~~~~~~~~~~~l~~-~~ 152 (265)
T cd03174 77 EKGIERALEAGVDEVRIFDSASETHSRK--NLNKSREEDLENAEEAIEAAKE-AGLEVEGSLEDAFGCKTDPEYVLE-VA 152 (265)
T ss_pred hhhHHHHHhCCcCEEEEEEecCHHHHHH--HhCCCHHHHHHHHHHHHHHHHH-CCCeEEEEEEeecCCCCCHHHHHH-HH
Confidence 5567788889999999876543211111 1232222334555555555544 366666655321110134445555 34
Q ss_pred HHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeC----CCCCHHHHHHHHHhCCChhh
Q 020423 220 KVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNG----GINTVDEVNAALRKGAHHVM 294 (326)
Q Consensus 220 ~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~G----gI~s~~da~~~l~~GaD~V~ 294 (326)
+.+.+.|+|.|.+..... ... |....+.+..+++..+++|+-.-+ |.. ...+.++++.||+.|-
T Consensus 153 ~~~~~~g~~~i~l~Dt~G---~~~-------P~~v~~li~~l~~~~~~~~~~~H~Hn~~gla-~an~laA~~aG~~~id 220 (265)
T cd03174 153 KALEEAGADEISLKDTVG---LAT-------PEEVAELVKALREALPDVPLGLHTHNTLGLA-VANSLAALEAGADRVD 220 (265)
T ss_pred HHHHHcCCCEEEechhcC---CcC-------HHHHHHHHHHHHHhCCCCeEEEEeCCCCChH-HHHHHHHHHcCCCEEE
Confidence 455679999999864321 111 111234556666665457776655 332 3345556667876653
|
The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM". |
| >PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase | Back alignment and domain information |
|---|
Probab=89.28 E-value=4.9 Score=38.81 Aligned_cols=43 Identities=21% Similarity=0.272 Sum_probs=34.6
Q ss_pred CccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhh
Q 020423 252 PLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVG 296 (326)
Q Consensus 252 ~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iG 296 (326)
...|+.+..+++.. ++|||. .||.+++|+..+++.|+|+|.+.
T Consensus 210 ~~tW~di~wlr~~~-~~Piiv-KgV~~~~dA~~a~~~Gvd~I~Vs 252 (367)
T PLN02493 210 TLSWKDVQWLQTIT-KLPILV-KGVLTGEDARIAIQAGAAGIIVS 252 (367)
T ss_pred CCCHHHHHHHHhcc-CCCEEe-ecCCCHHHHHHHHHcCCCEEEEC
Confidence 45688888777654 899765 55679999999999999998874
|
|
| >PF05853 DUF849: Prokaryotic protein of unknown function (DUF849); InterPro: IPR008567 This family consists of several hypothetical prokaryotic proteins with no known function | Back alignment and domain information |
|---|
Probab=89.27 E-value=4 Score=37.72 Aligned_cols=87 Identities=10% Similarity=0.069 Sum_probs=52.6
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC-CCcEEEEeccCCCCCccHHH
Q 020423 135 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQ 213 (326)
Q Consensus 135 ~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~-~~pv~vK~r~g~~~~~~~~e 213 (326)
.+++.++.|..+.++|+..|-+|.- .+. .|....+++...|++++||+.+ +..+.+ +.|.....+.++
T Consensus 24 tpeEia~~A~~c~~AGAa~vH~H~R--------~~~-~G~~s~d~~~~~e~~~~IR~~~pd~iv~~--Ttg~~~~~~~~~ 92 (272)
T PF05853_consen 24 TPEEIAADAVACYEAGAAIVHIHAR--------DDE-DGRPSLDPELYAEVVEAIRAACPDLIVQP--TTGGGGGPDPEE 92 (272)
T ss_dssp SHHHHHHHHHHHHHHTESEEEE-EE---------TT-TS-EE--HHHHHHHHHHHHHHSTTSEEEE--ESSTTTTSGHHH
T ss_pred CHHHHHHHHHHHHHcCCcEEEeecC--------CCC-CCCcCCCHHHHHHHHHHHHHHCCCeEEEe--CCCCCCCCCHHH
Confidence 5899999999999999999999842 111 2234578999999999999994 555544 444333334433
Q ss_pred HHHHHHHHhhhCCccEEEEecCC
Q 020423 214 LCDFIYKVSSLSPTRHFIIHSRK 236 (326)
Q Consensus 214 ~~~~ia~~le~~Gvd~I~v~~~~ 236 (326)
=.+.+.. ...|+..+..++
T Consensus 93 R~~~v~~----~~pd~asl~~gs 111 (272)
T PF05853_consen 93 RLAHVEA----WKPDMASLNPGS 111 (272)
T ss_dssp HCTHHHH----H--SEEEEE-S-
T ss_pred HHHHHHh----cCCCeEEecccc
Confidence 3222221 156777776554
|
; PDB: 3C6C_A 2Y7G_B 2Y7F_B 2Y7D_D 2Y7E_B 3LOT_A 3FA5_B 3NO5_C 3E02_A 3E49_B .... |
| >TIGR00683 nanA N-acetylneuraminate lyase | Back alignment and domain information |
|---|
Probab=89.22 E-value=19 Score=33.52 Aligned_cols=147 Identities=12% Similarity=0.060 Sum_probs=82.3
Q ss_pred CCCCcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC-CCcEEEE
Q 020423 122 PEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVK 200 (326)
Q Consensus 122 ~~~~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~-~~pv~vK 200 (326)
....|+++++.+.+.++-.+.++.++++|+|+|-+-. |... . ...+-+.+-.+.|.+++ +.|+.+=
T Consensus 68 ~~~~pvi~gv~~~~t~~~i~la~~a~~~Gad~v~v~~--P~y~-------~----~~~~~i~~yf~~v~~~~~~lpv~lY 134 (290)
T TIGR00683 68 KDQIALIAQVGSVNLKEAVELGKYATELGYDCLSAVT--PFYY-------K----FSFPEIKHYYDTIIAETGGLNMIVY 134 (290)
T ss_pred CCCCcEEEecCCCCHHHHHHHHHHHHHhCCCEEEEeC--CcCC-------C----CCHHHHHHHHHHHHhhCCCCCEEEE
Confidence 3456899999988999999999999999999999942 4321 1 12455666666665555 6888775
Q ss_pred eccCCCCC-ccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCH
Q 020423 201 CRIGVDDH-DSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTV 279 (326)
Q Consensus 201 ~r~g~~~~-~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~ 279 (326)
--++.... -+.+ + +.++.+.-.+-.|--+.+ +...+.++++...+.- +.+|. -
T Consensus 135 n~P~~tg~~l~~~-~---i~~L~~~pnv~giK~s~~------------------d~~~~~~~~~~~~~~~-v~~G~---d 188 (290)
T TIGR00683 135 SIPFLTGVNMGIE-Q---FGELYKNPKVLGVKFTAG------------------DFYLLERLKKAYPNHL-IWAGF---D 188 (290)
T ss_pred eCccccccCcCHH-H---HHHHhcCCCEEEEEeCCC------------------CHHHHHHHHHhCCCCE-EEECc---h
Confidence 33321111 1222 2 233332222333322111 1334444544444554 44553 2
Q ss_pred HHHHHHHHhCCChhhhhHHHHhCCchhHH
Q 020423 280 DEVNAALRKGAHHVMVGRAAYQNPWYTLG 308 (326)
Q Consensus 280 ~da~~~l~~GaD~V~iGRall~dP~l~~~ 308 (326)
+.+...+..|+++...+.+-+. |..+.+
T Consensus 189 ~~~~~~l~~G~~G~i~~~~n~~-P~~~~~ 216 (290)
T TIGR00683 189 EMMLPAASLGVDGAIGSTFNVN-GVRARQ 216 (290)
T ss_pred HHHHHHHHCCCCEEEecHHHhC-HHHHHH
Confidence 3355556678888877655432 554333
|
N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate. |
| >cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases | Back alignment and domain information |
|---|
Probab=89.18 E-value=11 Score=33.33 Aligned_cols=133 Identities=13% Similarity=0.141 Sum_probs=79.3
Q ss_pred CCcEEEEecCCCHHHHHHHHHHHHHC-CCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEec
Q 020423 124 QHPIVLQIGGSNLDNLAKATELANAY-NYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCR 202 (326)
Q Consensus 124 ~~piivQL~g~~~~~f~~aA~~a~~a-G~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r 202 (326)
+.++.+|+.+.+.++..+.|+.+.+. |--.|+| |.+. + | .+.++.+++. ++++.+-.-
T Consensus 51 ~~~v~~qv~~~~~e~~i~~a~~l~~~~~~~~iKI----P~T~-----~-g----------l~ai~~L~~~-gi~v~~T~V 109 (211)
T cd00956 51 DGPVSAQVVSTDAEGMVAEARKLASLGGNVVVKI----PVTE-----D-G----------LKAIKKLSEE-GIKTNVTAI 109 (211)
T ss_pred CCCEEEEEEeCCHHHHHHHHHHHHHhCCCEEEEE----cCcH-----h-H----------HHHHHHHHHc-CCceeeEEe
Confidence 46899999999999999999988886 4334444 3321 1 2 2344444433 554443211
Q ss_pred cCCCCCccHHHHHHHHHHHhhhCCccEEEEe-cCCcccCCCCcCCcCCCCCccHHHH---HHHHhcCCCce-EEEeCCCC
Q 020423 203 IGVDDHDSYNQLCDFIYKVSSLSPTRHFIIH-SRKALLNGISPAENRTIPPLKYEYY---YALLRDFPDLT-FTLNGGIN 277 (326)
Q Consensus 203 ~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~-~~~~~~~g~~~~~~~~~~~~~~~~i---~~i~~~~~~iP-VIa~GgI~ 277 (326)
-+.++. ....++|+++|... +|... .|. . ..+.+ .++.+.. +++ =|...+++
T Consensus 110 ------~s~~Qa-----~~Aa~AGA~yvsP~vgR~~~-~g~--------d--g~~~i~~i~~~~~~~-~~~tkil~As~r 166 (211)
T cd00956 110 ------FSAAQA-----LLAAKAGATYVSPFVGRIDD-LGG--------D--GMELIREIRTIFDNY-GFDTKILAASIR 166 (211)
T ss_pred ------cCHHHH-----HHHHHcCCCEEEEecChHhh-cCC--------C--HHHHHHHHHHHHHHc-CCCceEEecccC
Confidence 122222 12235899997664 32211 111 1 13333 3444443 333 46778899
Q ss_pred CHHHHHHHHHhCCChhhhhHHHH
Q 020423 278 TVDEVNAALRKGAHHVMVGRAAY 300 (326)
Q Consensus 278 s~~da~~~l~~GaD~V~iGRall 300 (326)
+++++.++.+.|||.|-+.=.++
T Consensus 167 ~~~ei~~a~~~Gad~vTv~~~vl 189 (211)
T cd00956 167 NPQHVIEAALAGADAITLPPDVL 189 (211)
T ss_pred CHHHHHHHHHcCCCEEEeCHHHH
Confidence 99999999999999998885544
|
FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase. |
| >PLN02746 hydroxymethylglutaryl-CoA lyase | Back alignment and domain information |
|---|
Probab=89.17 E-value=3.8 Score=39.31 Aligned_cols=142 Identities=12% Similarity=0.016 Sum_probs=69.0
Q ss_pred HHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEe--ccCCCC--CccHHHHHH
Q 020423 141 KATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKC--RIGVDD--HDSYNQLCD 216 (326)
Q Consensus 141 ~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~--r~g~~~--~~~~~e~~~ 216 (326)
+-.+++.++|+|.|.+-+++....+. ...+.+.+.-.+.+.++++..++. +..+.+-+ ..+.++ ..+.+.+.+
T Consensus 125 ~die~A~~~g~~~v~i~~s~Sd~h~~--~n~~~t~~e~l~~~~~~v~~Ak~~-Gl~v~~~is~~fg~p~~~r~~~~~l~~ 201 (347)
T PLN02746 125 KGFEAAIAAGAKEVAVFASASESFSK--SNINCSIEESLVRYREVALAAKKH-SIPVRGYVSCVVGCPIEGPVPPSKVAY 201 (347)
T ss_pred HHHHHHHHcCcCEEEEEEecCHHHHH--HHhCCCHHHHHHHHHHHHHHHHHc-CCeEEEEEEeeecCCccCCCCHHHHHH
Confidence 34455667899998887654322212 123333333334444555555443 55554333 333222 234555666
Q ss_pred HHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCC---CHHHHHHHHHhCCChh
Q 020423 217 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGIN---TVDEVNAALRKGAHHV 293 (326)
Q Consensus 217 ~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~---s~~da~~~l~~GaD~V 293 (326)
. ++.+.+.|+|.|.+....+ .. .|....+++..+++.++..||-.=+==+ -...+..+++.||+.|
T Consensus 202 ~-~~~~~~~Gad~I~l~DT~G----~a------~P~~v~~lv~~l~~~~~~~~i~~H~Hnd~GlA~AN~lAA~~aGa~~v 270 (347)
T PLN02746 202 V-AKELYDMGCYEISLGDTIG----VG------TPGTVVPMLEAVMAVVPVDKLAVHFHDTYGQALANILVSLQMGISTV 270 (347)
T ss_pred H-HHHHHHcCCCEEEecCCcC----Cc------CHHHHHHHHHHHHHhCCCCeEEEEECCCCChHHHHHHHHHHhCCCEE
Confidence 4 4455679999998865432 11 0111245555665555334443322111 1233445556776665
Q ss_pred hhh
Q 020423 294 MVG 296 (326)
Q Consensus 294 ~iG 296 (326)
-..
T Consensus 271 d~s 273 (347)
T PLN02746 271 DSS 273 (347)
T ss_pred EEe
Confidence 443
|
|
| >PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=89.11 E-value=15 Score=32.39 Aligned_cols=61 Identities=13% Similarity=0.277 Sum_probs=36.2
Q ss_pred CccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHH--hCCChhhhhHH
Q 020423 226 PTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR--KGAHHVMVGRA 298 (326)
Q Consensus 226 Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~--~GaD~V~iGRa 298 (326)
.+|++-+.......+|. + .+.+|+.+..+ ...|++.+||| +++.+.+++. .+..+|=+.++
T Consensus 122 ~~d~~LlDs~~~~~GGt-G------~~~dw~~~~~~----~~~p~iLAGGL-~peNV~~a~~~~~~p~gVDvsSG 184 (207)
T PRK13958 122 FVDLFIIDTPSVSYGGT-G------QTYDWTILKHI----KDIPYLIAGGI-NSENIQTVEQLKLSHQGYDIASG 184 (207)
T ss_pred hCCEEEEcCCCCCCCcC-C------cEeChHHhhhc----cCCCEEEECCC-CHHHHHHHHhcCCCCCEEEcccc
Confidence 47888887632222221 1 23458777544 24599999999 8888888764 24444444433
|
|
| >COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=89.10 E-value=13 Score=35.69 Aligned_cols=128 Identities=14% Similarity=0.105 Sum_probs=75.6
Q ss_pred HHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHHHH
Q 020423 142 ATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKV 221 (326)
Q Consensus 142 aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia~~ 221 (326)
..+.+.++|+|.|=+-.. . .+.|.- . ..-..+-+.|.++...+. |..+.|=+..-..+ ...+.+.+.+.+
T Consensus 18 ~l~~ai~~GADaVY~G~~--~-~~~R~~--a--~nfs~~~l~e~i~~ah~~-gkk~~V~~N~~~~~-~~~~~~~~~l~~- 87 (347)
T COG0826 18 DLKAAIAAGADAVYIGEK--E-FGLRRR--A--LNFSVEDLAEAVELAHSA-GKKVYVAVNTLLHN-DELETLERYLDR- 87 (347)
T ss_pred HHHHHHHcCCCEEEeCCc--c-cccccc--c--ccCCHHHHHHHHHHHHHc-CCeEEEEecccccc-chhhHHHHHHHH-
Confidence 345566789999988532 1 112211 0 112233466666665443 55555544432222 223334444443
Q ss_pred hhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEe--CCCCCHHHHHHHHHhCCChhhhhHHH
Q 020423 222 SSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLN--GGINTVDEVNAALRKGAHHVMVGRAA 299 (326)
Q Consensus 222 le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~--GgI~s~~da~~~l~~GaD~V~iGRal 299 (326)
+.+.|+|.|+++. ...+.-+.+..|++|+.++ -.+++++.++..-+.|+.-|.+.|-+
T Consensus 88 l~e~GvDaviv~D--------------------pg~i~l~~e~~p~l~ih~S~q~~v~N~~~~~f~~~~G~~rvVl~rEl 147 (347)
T COG0826 88 LVELGVDAVIVAD--------------------PGLIMLARERGPDLPIHVSTQANVTNAETAKFWKELGAKRVVLPREL 147 (347)
T ss_pred HHHcCCCEEEEcC--------------------HHHHHHHHHhCCCCcEEEeeeEecCCHHHHHHHHHcCCEEEEeCccC
Confidence 4579999999863 2233334556677887766 67889999888888888888888865
|
|
| >PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional | Back alignment and domain information |
|---|
Probab=89.02 E-value=12 Score=34.51 Aligned_cols=127 Identities=16% Similarity=0.133 Sum_probs=76.6
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHH
Q 020423 134 SNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQ 213 (326)
Q Consensus 134 ~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e 213 (326)
.+.+.+.+.|++++++|+..+-...--|.+... .|= .-...-.++++.+++..|+|+..-+ -+...+
T Consensus 38 e~~~~~~~~A~~lk~~g~~~~r~~~~kpRTs~~---s~~----G~g~~gl~~l~~~~~~~Gl~~~te~----~d~~~~-- 104 (266)
T PRK13398 38 ESEEQMVKVAEKLKELGVHMLRGGAFKPRTSPY---SFQ----GLGEEGLKILKEVGDKYNLPVVTEV----MDTRDV-- 104 (266)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeeecCCCCCC---ccC----CcHHHHHHHHHHHHHHcCCCEEEee----CChhhH--
Confidence 367899999999999999877776543432211 111 1123334455566677788886531 111111
Q ss_pred HHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCC-CHHHHHHHHH----h
Q 020423 214 LCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGIN-TVDEVNAALR----K 288 (326)
Q Consensus 214 ~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~-s~~da~~~l~----~ 288 (326)
+ .+.+. +|++-|-+++. .++.++.++. . .+.||+..-|.. +.+++..+.+ .
T Consensus 105 --~----~l~~~-vd~~kIga~~~---------------~n~~LL~~~a-~-~gkPV~lk~G~~~s~~e~~~A~e~i~~~ 160 (266)
T PRK13398 105 --E----EVADY-ADMLQIGSRNM---------------QNFELLKEVG-K-TKKPILLKRGMSATLEEWLYAAEYIMSE 160 (266)
T ss_pred --H----HHHHh-CCEEEECcccc---------------cCHHHHHHHh-c-CCCcEEEeCCCCCCHHHHHHHHHHHHhc
Confidence 2 23345 78998877653 1255666654 3 389999998877 8888777665 4
Q ss_pred CC-ChhhhhH
Q 020423 289 GA-HHVMVGR 297 (326)
Q Consensus 289 Ga-D~V~iGR 297 (326)
|. +.+.+=|
T Consensus 161 Gn~~i~L~~r 170 (266)
T PRK13398 161 GNENVVLCER 170 (266)
T ss_pred CCCeEEEEEC
Confidence 54 4444444
|
|
| >cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis | Back alignment and domain information |
|---|
Probab=88.98 E-value=19 Score=33.19 Aligned_cols=67 Identities=18% Similarity=0.147 Sum_probs=50.3
Q ss_pred CCCCcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEe
Q 020423 122 PEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKC 201 (326)
Q Consensus 122 ~~~~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~ 201 (326)
....|+++++.+.+.++-.+.|+.++++|+|+|-+-. |.. |. ...+-+.+..+.|.+.++.|+.+=-
T Consensus 67 ~~~~~vi~gv~~~~~~~~~~~a~~a~~~G~d~v~~~~--P~~-------~~----~~~~~l~~~~~~ia~~~~~pi~lYn 133 (284)
T cd00950 67 NGRVPVIAGTGSNNTAEAIELTKRAEKAGADAALVVT--PYY-------NK----PSQEGLYAHFKAIAEATDLPVILYN 133 (284)
T ss_pred CCCCcEEeccCCccHHHHHHHHHHHHHcCCCEEEEcc--ccc-------CC----CCHHHHHHHHHHHHhcCCCCEEEEE
Confidence 3456899999888999999999999999999999953 321 11 1245566777777777789988753
|
It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways. |
| >PRK04161 tagatose 1,6-diphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=88.93 E-value=6.9 Score=37.01 Aligned_cols=153 Identities=13% Similarity=0.102 Sum_probs=75.9
Q ss_pred HHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccC---CCCCc--c-----
Q 020423 141 KATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIG---VDDHD--S----- 210 (326)
Q Consensus 141 ~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g---~~~~~--~----- 210 (326)
..++++++.|.|++-+-.- .+.|+=-.--..+-.+++++-++.++ -++|+.+-+=.. .++.. .
T Consensus 111 ws~~rike~GadavK~Lly------y~pD~~~ein~~k~a~vervg~eC~a-~dipf~lE~l~Yd~~~~d~~~~eyak~k 183 (329)
T PRK04161 111 WSVKRLKEAGADAVKFLLY------YDVDGDEEINDQKQAYIERIGSECTA-EDIPFFLELLTYDERISDNNSAAYAKLK 183 (329)
T ss_pred hhHHHHHHhCCCeEEEEEE------ECCCCCHHHHHHHHHHHHHHHHHHHH-CCCCeEEEEeccCCcccccccHHHHhhC
Confidence 3578899999999998542 12221000000233455566555543 388988764321 11111 1
Q ss_pred HHHHHHHHHHHhh--hCCccEEEEecCCc--ccCCCCcCCcCCCCCccHHHHHHHHhcCCCce-EEEeCCCCCHHHHHHH
Q 020423 211 YNQLCDFIYKVSS--LSPTRHFIIHSRKA--LLNGISPAENRTIPPLKYEYYYALLRDFPDLT-FTLNGGINTVDEVNAA 285 (326)
Q Consensus 211 ~~e~~~~ia~~le--~~Gvd~I~v~~~~~--~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iP-VIa~GgI~s~~da~~~ 285 (326)
.+.+.+.+ +.+. ..|+|.+-|.-... .-.|....+.-+........+++..+ ..++| |+.++|+. .+...+.
T Consensus 184 P~~V~~am-kefs~~~~gvDVlKvEvPvn~~~veG~~~g~~~yt~~eA~~~f~~~~~-~~~~P~i~LSaGV~-~~~F~~~ 260 (329)
T PRK04161 184 PHKVNGAM-KVFSDKRFGVDVLKVEVPVNMAYVEGFTEGEVVYSQEEAIKAFKDQEA-ATHLPYIYLSAGVS-AKLFQET 260 (329)
T ss_pred hHHHHHHH-HHhccCCCCCcEEEEecccccccccccCcccccccHHHHHHHHHHHhc-ccCCCEEEEcCCCC-HHHHHHH
Confidence 11223322 3344 37999998853211 11121110000000001122333332 34788 67788984 4444444
Q ss_pred H----HhCCC--hhhhhHHHHhCC
Q 020423 286 L----RKGAH--HVMVGRAAYQNP 303 (326)
Q Consensus 286 l----~~GaD--~V~iGRall~dP 303 (326)
+ +.|+. +|..||+.=.++
T Consensus 261 l~~A~~aGa~fnGvL~GRAtW~~~ 284 (329)
T PRK04161 261 LVFAAEAGAQFNGVLCGRATWAGS 284 (329)
T ss_pred HHHHHhcCCCcccEEeehhhhhhh
Confidence 4 47887 999999986653
|
|
| >PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4 | Back alignment and domain information |
|---|
Probab=88.90 E-value=0.83 Score=41.83 Aligned_cols=74 Identities=16% Similarity=0.077 Sum_probs=50.9
Q ss_pred HHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhH
Q 020423 218 IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGR 297 (326)
Q Consensus 218 ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGR 297 (326)
+++.++++|++.|.|-....+.+ ..++.+..+++.. ++||..--=|-++-++.++...|||+|.+=-
T Consensus 73 ~a~~y~~~GA~aiSVlTe~~~F~------------Gs~~dL~~v~~~~-~~PvL~KDFIid~~QI~eA~~~GADaVLLI~ 139 (254)
T PF00218_consen 73 IAKAYEEAGAAAISVLTEPKFFG------------GSLEDLRAVRKAV-DLPVLRKDFIIDPYQIYEARAAGADAVLLIA 139 (254)
T ss_dssp HHHHHHHTT-SEEEEE--SCCCH------------HHHHHHHHHHHHS-SS-EEEES---SHHHHHHHHHTT-SEEEEEG
T ss_pred HHHHHHhcCCCEEEEECCCCCCC------------CCHHHHHHHHHHh-CCCcccccCCCCHHHHHHHHHcCCCEeehhH
Confidence 45677889999999976543222 3477787777664 9999999999999999999999999998766
Q ss_pred HHHhCCc
Q 020423 298 AAYQNPW 304 (326)
Q Consensus 298 all~dP~ 304 (326)
++|.+-.
T Consensus 140 ~~L~~~~ 146 (254)
T PF00218_consen 140 AILSDDQ 146 (254)
T ss_dssp GGSGHHH
T ss_pred HhCCHHH
Confidence 6665433
|
1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A .... |
| >TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase | Back alignment and domain information |
|---|
Probab=88.87 E-value=20 Score=33.40 Aligned_cols=66 Identities=15% Similarity=0.193 Sum_probs=50.7
Q ss_pred CCCCcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC-CCcEEEE
Q 020423 122 PEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVK 200 (326)
Q Consensus 122 ~~~~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~-~~pv~vK 200 (326)
+...|++++..+.+.++-.+.++.++++|+|++-+-. |... . ...+-+.+-.++|.+++ +.|+.+=
T Consensus 67 ~g~~pvi~gv~~~~t~~ai~~a~~A~~~Gad~v~v~p--P~y~-------~----~~~~~l~~~f~~ia~a~~~lpv~iY 133 (294)
T TIGR02313 67 AGRIPFAPGTGALNHDETLELTKFAEEAGADAAMVIV--PYYN-------K----PNQEALYDHFAEVADAVPDFPIIIY 133 (294)
T ss_pred CCCCcEEEECCcchHHHHHHHHHHHHHcCCCEEEEcC--ccCC-------C----CCHHHHHHHHHHHHHhccCCCEEEE
Confidence 4557899999888999999999999999999999853 3311 1 13466777777777788 8998875
|
This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism. |
| >cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS) | Back alignment and domain information |
|---|
Probab=88.85 E-value=4.3 Score=38.46 Aligned_cols=91 Identities=14% Similarity=0.052 Sum_probs=60.2
Q ss_pred CHHHHHHHHHHHHhc-CCCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHH
Q 020423 178 DPKFVGEAMSVIAAN-TNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYE 256 (326)
Q Consensus 178 r~~~l~eiv~avr~~-~~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~ 256 (326)
.++.+++.++.+++. .+.|+.|.+-.-..+ ...++.++ ++.+.+++.+..+++.+ ..
T Consensus 38 ~~e~l~~~i~~~~~l~tdkPfGVnl~~~~~~-~~~~~~l~----vi~e~~v~~V~~~~G~P-----------------~~ 95 (320)
T cd04743 38 RGEQVKALLEETAELLGDKPWGVGILGFVDT-ELRAAQLA----VVRAIKPTFALIAGGRP-----------------DQ 95 (320)
T ss_pred CHHHHHHHHHHHHHhccCCCeEEEEeccCCC-cchHHHHH----HHHhcCCcEEEEcCCCh-----------------HH
Confidence 588899999999985 689999987432111 22333333 23357899998775321 11
Q ss_pred HHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhh
Q 020423 257 YYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMV 295 (326)
Q Consensus 257 ~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~i 295 (326)
+.++ ++. .+.|+ .-+.|++.+.++.+.|||.|.+
T Consensus 96 -~~~l-k~~-Gi~v~--~~v~s~~~A~~a~~~GaD~vVa 129 (320)
T cd04743 96 -ARAL-EAI-GISTY--LHVPSPGLLKQFLENGARKFIF 129 (320)
T ss_pred -HHHH-HHC-CCEEE--EEeCCHHHHHHHHHcCCCEEEE
Confidence 3333 343 67776 4467999999999999999873
|
NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. |
| >PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF | Back alignment and domain information |
|---|
Probab=88.82 E-value=4.3 Score=35.79 Aligned_cols=78 Identities=18% Similarity=0.134 Sum_probs=41.9
Q ss_pred HHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCC----CccHHHHHH
Q 020423 141 KATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDD----HDSYNQLCD 216 (326)
Q Consensus 141 ~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~----~~~~~e~~~ 216 (326)
+.+..|.+.|+|-|||..+ .. .|| +-... ..++.+++..++|+.|=+|+-..+ ..+++.+.+
T Consensus 11 ~~a~~A~~~GAdRiELc~~------l~---~GG-lTPS~----g~i~~~~~~~~ipv~vMIRpr~gdF~Ys~~E~~~M~~ 76 (201)
T PF03932_consen 11 EDALAAEAGGADRIELCSN------LE---VGG-LTPSL----GLIRQAREAVDIPVHVMIRPRGGDFVYSDEEIEIMKE 76 (201)
T ss_dssp HHHHHHHHTT-SEEEEEBT------GG---GT--B---H----HHHHHHHHHTTSEEEEE--SSSS-S---HHHHHHHHH
T ss_pred HHHHHHHHcCCCEEEECCC------cc---CCC-cCcCH----HHHHHHHhhcCCceEEEECCCCCCccCCHHHHHHHHH
Confidence 4566778899999999642 11 122 11122 345555567788988888773222 123445555
Q ss_pred HHHHHhhhCCccEEEEe
Q 020423 217 FIYKVSSLSPTRHFIIH 233 (326)
Q Consensus 217 ~ia~~le~~Gvd~I~v~ 233 (326)
.+. .+.+.|+|.+.+-
T Consensus 77 dI~-~~~~~GadG~VfG 92 (201)
T PF03932_consen 77 DIR-MLRELGADGFVFG 92 (201)
T ss_dssp HHH-HHHHTT-SEEEE-
T ss_pred HHH-HHHHcCCCeeEEE
Confidence 444 4467999999874
|
A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B. |
| >cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=88.77 E-value=4.5 Score=37.43 Aligned_cols=139 Identities=15% Similarity=0.123 Sum_probs=74.7
Q ss_pred HHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEE--EEeccCCCC--CccHHHHHHH
Q 020423 142 ATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVS--VKCRIGVDD--HDSYNQLCDF 217 (326)
Q Consensus 142 aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~--vK~r~g~~~--~~~~~e~~~~ 217 (326)
-.+++.++|.|.|.+-...... ..+..++.+.++..+.+.+.++..++. |..+. +....+.++ ..+.+.+.+.
T Consensus 78 dv~~A~~~g~~~i~i~~~~Sd~--~~~~~~~~s~~~~~~~~~~~v~~ak~~-G~~v~~~i~~~f~~~~~~~~~~~~~~~~ 154 (274)
T cd07938 78 GAERALAAGVDEVAVFVSASET--FSQKNINCSIAESLERFEPVAELAKAA-GLRVRGYVSTAFGCPYEGEVPPERVAEV 154 (274)
T ss_pred HHHHHHHcCcCEEEEEEecCHH--HHHHHcCCCHHHHHHHHHHHHHHHHHC-CCeEEEEEEeEecCCCCCCCCHHHHHHH
Confidence 4667778899988775543221 111224444444445566666666554 43333 232333222 2245555553
Q ss_pred HHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCC---CHHHHHHHHHhCCChhh
Q 020423 218 IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGIN---TVDEVNAALRKGAHHVM 294 (326)
Q Consensus 218 ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~---s~~da~~~l~~GaD~V~ 294 (326)
++.+.+.|+|.|.+....+ .. .|....+.+..+++..+++||-.=+-=+ -...+..+++.|||.|-
T Consensus 155 -~~~~~~~Ga~~i~l~DT~G----~~------~P~~v~~lv~~l~~~~~~~~i~~H~Hnd~GlA~AN~laA~~aGa~~id 223 (274)
T cd07938 155 -AERLLDLGCDEISLGDTIG----VA------TPAQVRRLLEAVLERFPDEKLALHFHDTRGQALANILAALEAGVRRFD 223 (274)
T ss_pred -HHHHHHcCCCEEEECCCCC----cc------CHHHHHHHHHHHHHHCCCCeEEEEECCCCChHHHHHHHHHHhCCCEEE
Confidence 4455679999998865332 11 1122245667777666668876644322 22334566678877765
|
3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy |
| >PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants | Back alignment and domain information |
|---|
Probab=88.61 E-value=11 Score=34.78 Aligned_cols=126 Identities=13% Similarity=0.114 Sum_probs=71.5
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccc--cCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHH
Q 020423 135 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSL--MLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYN 212 (326)
Q Consensus 135 ~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl--~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~ 212 (326)
+.+.+.+.++...+.|.|++-+... +++ +-+| ..|.+++..+++.+. -+.|+.+.+... +.+
T Consensus 20 d~~~~~~~i~~l~~~Gv~gl~~~Gs--------tGE-~~~Lt~~Er~~l~~~~~~~~~--~~~~vi~gv~~~-----st~ 83 (289)
T PF00701_consen 20 DEDALKRLIDFLIEAGVDGLVVLGS--------TGE-FYSLTDEERKELLEIVVEAAA--GRVPVIAGVGAN-----STE 83 (289)
T ss_dssp -HHHHHHHHHHHHHTTSSEEEESST--------TTT-GGGS-HHHHHHHHHHHHHHHT--TSSEEEEEEESS-----SHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCC--------Ccc-cccCCHHHHHHHHHHHHHHcc--CceEEEecCcch-----hHH
Confidence 5788999999999999999999653 122 2121 233334444444332 247888865542 355
Q ss_pred HHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEE------eCCCCCHHHHHHHH
Q 020423 213 QLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTL------NGGINTVDEVNAAL 286 (326)
Q Consensus 213 e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa------~GgI~s~~da~~~l 286 (326)
+.++ .++..++.|+|.+.+..... ...+. ..-.+++.++.+. +++||+. .|---+++.+.++.
T Consensus 84 ~~i~-~a~~a~~~Gad~v~v~~P~~--~~~s~-------~~l~~y~~~ia~~-~~~pi~iYn~P~~tg~~ls~~~l~~L~ 152 (289)
T PF00701_consen 84 EAIE-LARHAQDAGADAVLVIPPYY--FKPSQ-------EELIDYFRAIADA-TDLPIIIYNNPARTGNDLSPETLARLA 152 (289)
T ss_dssp HHHH-HHHHHHHTT-SEEEEEESTS--SSCCH-------HHHHHHHHHHHHH-SSSEEEEEEBHHHHSSTSHHHHHHHHH
T ss_pred HHHH-HHHHHhhcCceEEEEecccc--ccchh-------hHHHHHHHHHHhh-cCCCEEEEECCCccccCCCHHHHHHHh
Confidence 6666 35566789999998865321 11100 0114555666644 5788764 24455666666655
Q ss_pred H
Q 020423 287 R 287 (326)
Q Consensus 287 ~ 287 (326)
+
T Consensus 153 ~ 153 (289)
T PF00701_consen 153 K 153 (289)
T ss_dssp T
T ss_pred c
Confidence 4
|
The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A .... |
| >PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=88.53 E-value=7.1 Score=34.57 Aligned_cols=125 Identities=17% Similarity=0.213 Sum_probs=66.1
Q ss_pred EEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCC
Q 020423 128 VLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDD 207 (326)
Q Consensus 128 ivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~ 207 (326)
.++++|-... +.|+.+.++|+|.+-+-+...+ .| | -.++.+.++.+.+.... .+|.|-..
T Consensus 4 ~vKICGi~~~---eda~~~~~~Gad~iGfI~~~~S---~R---~-----V~~~~a~~i~~~~~~~i-~~VgVf~~----- 63 (210)
T PRK01222 4 RVKICGITTP---EDAEAAAELGADAIGFVFYPKS---PR---Y-----VSPEQAAELAAALPPFV-KVVGVFVN----- 63 (210)
T ss_pred eEEECCCCcH---HHHHHHHHcCCCEEEEccCCCC---CC---c-----CCHHHHHHHHHhCCCCC-CEEEEEeC-----
Confidence 3667764322 2366677899999988653222 12 1 23677777776653211 23433211
Q ss_pred CccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHH
Q 020423 208 HDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR 287 (326)
Q Consensus 208 ~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~ 287 (326)
.+.+++ .+++++.++|++.+||... .+.+..+++.. +++||-+=.+.+..+...+.+
T Consensus 64 -~~~~~i----~~~~~~~~~d~vQLHg~e~-----------------~~~~~~l~~~~-~~~iik~i~v~~~~~l~~~~~ 120 (210)
T PRK01222 64 -ASDEEI----DEIVETVPLDLLQLHGDET-----------------PEFCRQLKRRY-GLPVIKALRVRSAGDLEAAAA 120 (210)
T ss_pred -CCHHHH----HHHHHhcCCCEEEECCCCC-----------------HHHHHHHHhhc-CCcEEEEEecCCHHHHHHHHh
Confidence 233333 3455679999999997431 23344444433 466665555555444444333
Q ss_pred --hCCChhhh
Q 020423 288 --KGAHHVMV 295 (326)
Q Consensus 288 --~GaD~V~i 295 (326)
..+|.+.+
T Consensus 121 ~~~~~d~~L~ 130 (210)
T PRK01222 121 YYGDADGLLL 130 (210)
T ss_pred hhccCCEEEE
Confidence 23554443
|
|
| >TIGR00284 dihydropteroate synthase-related protein | Back alignment and domain information |
|---|
Probab=88.51 E-value=6.9 Score=39.41 Aligned_cols=60 Identities=20% Similarity=0.235 Sum_probs=42.7
Q ss_pred EEEEecC-CCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEE
Q 020423 127 IVLQIGG-SNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVK 200 (326)
Q Consensus 127 iivQL~g-~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK 200 (326)
+...+.. ..-+...+-|+...+.|+|.|+|++++..+ .++.+..+++++++.++.|+++-
T Consensus 154 v~aEI~~a~~l~~i~~~A~~~~~~GADIIDIG~~st~p--------------~~~~v~~~V~~l~~~~~~pISID 214 (499)
T TIGR00284 154 VVAEIPPTVAEDGIEGLAARMERDGADMVALGTGSFDD--------------DPDVVKEKVKTALDALDSPVIAD 214 (499)
T ss_pred EEEEEcCCcchHHHHHHHHHHHHCCCCEEEECCCcCCC--------------cHHHHHHHHHHHHhhCCCcEEEe
Confidence 4555543 223566777778888999999999865432 14468889999988778888773
|
This protein has been found so far only in the Archaea, and in particular in those archaea that lack a bacterial-type dihydropteroate synthase. The central region of this protein shows considerable homology to the amino-terminal half of dihydropteroate synthases, while the carboxyl-terminal region shows homology to the small, uncharacterized protein slr0651 of Synechocystis PCC6803. |
| >PRK00042 tpiA triosephosphate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=88.46 E-value=3.3 Score=37.85 Aligned_cols=45 Identities=13% Similarity=0.177 Sum_probs=33.9
Q ss_pred CceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhCCchhHHhHHH
Q 020423 267 DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDT 312 (326)
Q Consensus 267 ~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~dP~l~~~~i~~ 312 (326)
+++|+..|+|......+-+...++|++.+|++.| +++-|...++.
T Consensus 203 ~~~IlYGGSV~~~N~~~l~~~~~vDG~LVG~Asl-~~~~f~~ii~~ 247 (250)
T PRK00042 203 KVRILYGGSVKPDNAAELMAQPDIDGALVGGASL-KAEDFLAIVKA 247 (250)
T ss_pred CceEEEcCCCCHHHHHHHhcCCCCCEEEEeeeee-chHHHHHHHHH
Confidence 5899999999655555555558999999999998 55446766653
|
|
| >cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain | Back alignment and domain information |
|---|
Probab=88.33 E-value=6.5 Score=37.75 Aligned_cols=49 Identities=22% Similarity=0.328 Sum_probs=39.0
Q ss_pred ccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhh----hHHHHhCC
Q 020423 253 LKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMV----GRAAYQNP 303 (326)
Q Consensus 253 ~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~i----GRall~dP 303 (326)
..|+.+..+++.. ++||+.=| |.+++++..+.+.|+|+|.+ ||.+...|
T Consensus 208 ~~~~~l~~lr~~~-~~PvivKg-v~~~~dA~~a~~~G~d~I~vsnhGGr~ld~~~ 260 (351)
T cd04737 208 LSPADIEFIAKIS-GLPVIVKG-IQSPEDADVAINAGADGIWVSNHGGRQLDGGP 260 (351)
T ss_pred CCHHHHHHHHHHh-CCcEEEec-CCCHHHHHHHHHcCCCEEEEeCCCCccCCCCc
Confidence 4688888877664 89999774 89999999999999999988 56554444
|
LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). |
| >PRK12330 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=88.30 E-value=23 Score=35.67 Aligned_cols=126 Identities=13% Similarity=0.105 Sum_probs=71.3
Q ss_pred HHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCc-EEEEeccCCCCCccHHHHHHHHH
Q 020423 141 KATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVP-VSVKCRIGVDDHDSYNQLCDFIY 219 (326)
Q Consensus 141 ~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~p-v~vK~r~g~~~~~~~~e~~~~ia 219 (326)
.-.+.+.+.|.|.+-|-. + +|+.+.+...++++++.-... ..+-+..+. ..+.+...+ ++
T Consensus 101 ~fv~~a~~~Gidi~RIfd--~--------------lndv~nl~~ai~~vk~ag~~~~~~i~yt~sp--~~t~e~~~~-~a 161 (499)
T PRK12330 101 RFVEKSAENGMDVFRVFD--A--------------LNDPRNLEHAMKAVKKVGKHAQGTICYTVSP--IHTVEGFVE-QA 161 (499)
T ss_pred HHHHHHHHcCCCEEEEEe--c--------------CChHHHHHHHHHHHHHhCCeEEEEEEEecCC--CCCHHHHHH-HH
Confidence 345567788999977732 1 145677778888887654322 223333332 235555555 45
Q ss_pred HHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCC-CceEEEeCCCC---CHHHHHHHHHhCCChhhh
Q 020423 220 KVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFP-DLTFTLNGGIN---TVDEVNAALRKGAHHVMV 295 (326)
Q Consensus 220 ~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~-~iPVIa~GgI~---s~~da~~~l~~GaD~V~i 295 (326)
+.++++|+|.|.+..-.+ .. .|....+++..+++.++ ++||-.-.-=+ ......++++.|||.|-.
T Consensus 162 ~~l~~~Gad~I~IkDtaG----ll------~P~~~~~LV~~Lk~~~~~~ipI~~H~Hnt~GlA~An~laAieAGad~vDt 231 (499)
T PRK12330 162 KRLLDMGADSICIKDMAA----LL------KPQPAYDIVKGIKEACGEDTRINLHCHSTTGVTLVSLMKAIEAGVDVVDT 231 (499)
T ss_pred HHHHHcCCCEEEeCCCcc----CC------CHHHHHHHHHHHHHhCCCCCeEEEEeCCCCCcHHHHHHHHHHcCCCEEEe
Confidence 556789999999865332 11 11223566667766653 67876543222 223344556677776543
|
|
| >PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional | Back alignment and domain information |
|---|
Probab=88.22 E-value=11 Score=35.73 Aligned_cols=55 Identities=18% Similarity=0.248 Sum_probs=37.1
Q ss_pred HHHHHHHH-HCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEecc
Q 020423 140 AKATELAN-AYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRI 203 (326)
Q Consensus 140 ~~aA~~a~-~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~ 203 (326)
++-|++.. ++|+|.|+||+.+..+. ++| .-++-+.++++.|.+.++.|+.+-.+.
T Consensus 78 ~~~Ak~q~~~~GAd~Idl~~~s~dp~--~~d-------~~~~e~~~~Vk~V~eavd~PL~Id~s~ 133 (319)
T PRK04452 78 AAWAKKCVEEYGADMITLHLISTDPN--GKD-------KSPEEAAKTVEEVLQAVDVPLIIGGSG 133 (319)
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCcc--ccc-------chHHHHHHHHHHHHHhCCCCEEEecCC
Confidence 44445554 89999999997544321 112 235667778999988899999875444
|
|
| >TIGR01232 lacD tagatose 1,6-diphosphate aldolase | Back alignment and domain information |
|---|
Probab=88.17 E-value=7.6 Score=36.65 Aligned_cols=152 Identities=12% Similarity=0.116 Sum_probs=74.7
Q ss_pred HHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCC---CCC--ccH-----
Q 020423 142 ATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGV---DDH--DSY----- 211 (326)
Q Consensus 142 aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~---~~~--~~~----- 211 (326)
.++++++.|.|++-+-.-. +.|+=-.--..+-.+++++-++.++ -++|+.+-+=... .+. .++
T Consensus 111 s~~rike~GadavK~Llyy------~pD~~~ein~~k~a~vervg~ec~a-~dipf~lE~ltYd~~~~~~~~~~yak~kP 183 (325)
T TIGR01232 111 SAKRLKEQGANAVKFLLYY------DVDDAEEINIQKKAYIERIGSECVA-EDIPFFLEVLTYDDNIPDNGSVEFAKVKP 183 (325)
T ss_pred cHHHHHHhCCCeEEEEEEe------CCCCChHHHHHHHHHHHHHHHHHHH-CCCCeEEEEeccCCCCCCCCcHHHHHhCh
Confidence 4678999999999985421 1111000000223455555555433 3888887543211 111 111
Q ss_pred HHHHHHHHHHhhh--CCccEEEEecCCc--ccCCCCcCCcCCCCCccHHHHHHHHhcCCCce-EEEeCCCCCHHHHHHHH
Q 020423 212 NQLCDFIYKVSSL--SPTRHFIIHSRKA--LLNGISPAENRTIPPLKYEYYYALLRDFPDLT-FTLNGGINTVDEVNAAL 286 (326)
Q Consensus 212 ~e~~~~ia~~le~--~Gvd~I~v~~~~~--~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iP-VIa~GgI~s~~da~~~l 286 (326)
+.+.+ ..+.+.+ .|+|.+-|.-... .-.|....+.-+.....-+.+++..+ ..++| |+.++|+ +.+...+.+
T Consensus 184 ~~V~~-a~kefs~~~~gvDVlKvEvPvn~~~veG~~~~e~~yt~~eA~~~f~eq~~-~~~~P~i~LSaGV-~~~~F~~~l 260 (325)
T TIGR01232 184 RKVNE-AMKLFSEPRFNVDVLKVEVPVNVKYVEGFAEGEVVYTKEEAAQHFKDQDA-ATHLPYIYLSAGV-SAELFQETL 260 (325)
T ss_pred HHHHH-HHHHhccCCCCCcEEEEecccccccccccCcccccccHHHHHHHHHHHhh-ccCCCEEEEcCCC-CHHHHHHHH
Confidence 11222 2334444 7999998863211 11121110000000011222333222 34788 6778898 455444444
Q ss_pred ----HhCC--ChhhhhHHHHhCC
Q 020423 287 ----RKGA--HHVMVGRAAYQNP 303 (326)
Q Consensus 287 ----~~Ga--D~V~iGRall~dP 303 (326)
+.|+ ++|..||+.=.++
T Consensus 261 ~~A~~aGa~fsGvL~GRAtW~~~ 283 (325)
T TIGR01232 261 KFAHEAGAKFNGVLCGRATWSGA 283 (325)
T ss_pred HHHHHcCCCcceEEeehhhhHhh
Confidence 3688 7999999986553
|
This family consists of Gram-positive proteins. Tagatose 1,6-diphosphate aldolase is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation. |
| >cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2 | Back alignment and domain information |
|---|
Probab=88.05 E-value=11 Score=35.72 Aligned_cols=100 Identities=13% Similarity=0.132 Sum_probs=60.8
Q ss_pred CCcEEEEec-------CCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCc
Q 020423 124 QHPIVLQIG-------GSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVP 196 (326)
Q Consensus 124 ~~piivQL~-------g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~p 196 (326)
+-++.+=+. +.+.++..+.++.++++|+|.||++.+....... .+..-.....+.-...+..+.+|+.+++|
T Consensus 216 d~~v~vris~~~~~~~g~~~eea~~ia~~Le~~Gvd~iev~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ik~~v~iP 294 (338)
T cd04733 216 GFPVGIKLNSADFQRGGFTEEDALEVVEALEEAGVDLVELSGGTYESPAM-AGAKKESTIAREAYFLEFAEKIRKVTKTP 294 (338)
T ss_pred CCeEEEEEcHHHcCCCCCCHHHHHHHHHHHHHcCCCEEEecCCCCCCccc-cccccCCccccchhhHHHHHHHHHHcCCC
Confidence 446666663 4578888999999999999999999875432111 00000011122233457778888888999
Q ss_pred EEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEe
Q 020423 197 VSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIH 233 (326)
Q Consensus 197 v~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~ 233 (326)
|.+--++ .+.++. .+++++.++|.|-+.
T Consensus 295 Vi~~G~i-----~t~~~a----~~~l~~g~aD~V~lg 322 (338)
T cd04733 295 LMVTGGF-----RTRAAM----EQALASGAVDGIGLA 322 (338)
T ss_pred EEEeCCC-----CCHHHH----HHHHHcCCCCeeeeC
Confidence 8774322 233332 345566679988653
|
Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >PLN02460 indole-3-glycerol-phosphate synthase | Back alignment and domain information |
|---|
Probab=88.03 E-value=1.9 Score=40.99 Aligned_cols=75 Identities=13% Similarity=0.060 Sum_probs=60.2
Q ss_pred HHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhH
Q 020423 218 IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGR 297 (326)
Q Consensus 218 ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGR 297 (326)
+++.+++.|++.|.|-.-..+.+| .++.+.++++..+++||..-==|-++-++.++...|||+|.+=-
T Consensus 144 iA~~Ye~~GA~aISVLTd~~~F~G------------s~e~L~~vr~~~v~lPvLrKDFIID~yQI~eAr~~GADAVLLIa 211 (338)
T PLN02460 144 IAQAYEKGGAACLSVLTDEKYFQG------------SFENLEAIRNAGVKCPLLCKEFIVDAWQIYYARSKGADAILLIA 211 (338)
T ss_pred HHHHHHhCCCcEEEEecCcCcCCC------------CHHHHHHHHHcCCCCCEeeccccCCHHHHHHHHHcCCCcHHHHH
Confidence 567788999999999765433332 37778777765359999999999999999999999999999988
Q ss_pred HHHhCCc
Q 020423 298 AAYQNPW 304 (326)
Q Consensus 298 all~dP~ 304 (326)
++|.+..
T Consensus 212 aiL~~~~ 218 (338)
T PLN02460 212 AVLPDLD 218 (338)
T ss_pred HhCCHHH
Confidence 8886544
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 326 | ||||
| 3b0p_A | 350 | Trna-Dihydrouridine Synthase From Thermus Thermophi | 4e-53 | ||
| 3b0v_C | 363 | Trna-Dihydrouridine Synthase From Thermus Thermophi | 5e-50 | ||
| 1vhn_A | 318 | Crystal Structure Of A Putative Flavin Oxidoreducta | 8e-11 |
| >pdb|3B0P|A Chain A, Trna-Dihydrouridine Synthase From Thermus Thermophilus Length = 350 | Back alignment and structure |
|
| >pdb|3B0V|C Chain C, Trna-Dihydrouridine Synthase From Thermus Thermophilus In Complex With Trna Length = 363 | Back alignment and structure |
|
| >pdb|1VHN|A Chain A, Crystal Structure Of A Putative Flavin Oxidoreductase With Flavin Length = 318 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3b0p_A TRNA-dihydrouridine synthase; TIM barrel, oxidoreductase; HET: FMN; 1.70A {Thermus thermophilus} PDB: 3b0u_X* 3b0v_C* Length = 350 | Back alignment and structure |
|---|
Score = 405 bits (1044), Expect = e-142
Identities = 106/259 (40%), Positives = 154/259 (59%), Gaps = 8/259 (3%)
Query: 67 LPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHP 126
L P SVAPM+D TD H+R L R +S LYTEM + ++ GN +R LAF PE+HP
Sbjct: 2 LDPRLSVAPMVDRTDRHFRFLVRQVSLGVRLYTEMTVDQAVLR--GNRERLLAFRPEEHP 59
Query: 127 IVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAM 186
I LQ+ GS+ +LA+A + A+ YDEINLN GCPS K G +G L+LD V E +
Sbjct: 60 IALQLAGSDPKSLAEAARIGEAFGYDEINLNLGCPSEKA-QEGGYGACLLLDLARVREIL 118
Query: 187 SVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAE 246
+ VPV+VK R+G++ ++Y L + ++ + + F++H+R ALL +S
Sbjct: 119 KAMGEAVRVPVTVKMRLGLEGKETYRGLAQSVEAMAE-AGVKVFVVHARSALL-ALSTKA 176
Query: 247 NRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYT 306
NR IPPL++++ + L DFP LTF NGGI +++E L K VM+GRA Y++P+
Sbjct: 177 NREIPPLRHDWVHRLKGDFPQLTFVTNGGIRSLEEALFHL-KRVDGVMLGRAVYEDPFV- 234
Query: 307 LGHVDTAIYGAPSSGLTRR 325
L D ++G P +R
Sbjct: 235 LEEADRRVFGLPRR-PSRL 252
|
| >1vhn_A Putative flavin oxidoreducatase; structural genomics, unknown function; HET: FMN; 1.59A {Thermotoga maritima} SCOP: c.1.4.1 Length = 318 | Back alignment and structure |
|---|
Score = 125 bits (317), Expect = 6e-34
Identities = 57/239 (23%), Positives = 106/239 (44%), Gaps = 33/239 (13%)
Query: 73 VAPMMDWTDNHYRTLARLISKH--AWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 130
+APM +TD+ +RTLA + + ++EM++A+ + + L P + + +Q
Sbjct: 9 LAPMAGYTDSAFRTLAF---EWGADFAFSEMVSAKGFLMNSQKTEELLPQ-PHERNVAVQ 64
Query: 131 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 190
I GS + L++A + + Y I+LN GCP KV G G +L+ D + + +
Sbjct: 65 IFGSEPNELSEAARI-LSEKYKWIDLNAGCPVRKVVKEGA-GGALLKDLRHFRYIVRELR 122
Query: 191 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYK--VSSLSPTRHFIIH--SRKALLNGISPAE 246
+ + SVK R+G + + ++ + + V + IH + G AE
Sbjct: 123 KSVSGKFSVKTRLGWEK-NEVEEIYRILVEEGVDEVF------IHTRTVVQSFTG--RAE 173
Query: 247 NRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRK-GAHHVMVGRAAYQNPW 304
+ + L+ + P ++G I T ++ AL + G ++V R A PW
Sbjct: 174 WKALSVLE--------KRIP---TFVSGDIFTPEDAKRALEESGCDGLLVARGAIGRPW 221
|
| >1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A* Length = 311 | Back alignment and structure |
|---|
Score = 42.2 bits (100), Expect = 1e-04
Identities = 32/221 (14%), Positives = 63/221 (28%), Gaps = 61/221 (27%)
Query: 117 FLAFSPEQHPIVLQIGGSNLD---NLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGV 173
+ ++ PI I G + + K + ++ E+NL+C P V G
Sbjct: 86 NQKENAQEGPIFFSIAGMSAAENIAMLKKIQESDFSGITELNLSC----PNVPGEPQLAY 141
Query: 174 SLMLDPKFVGEAMSVIAANTNVPVSVK-------------CRIGVDDHDSYNQLCDFIYK 220
D + + + + P+ VK I ++
Sbjct: 142 ----DFEATEKLLKEVFTFFTKPLGVKLPPYFDLVHFDIMAEILNQFP------LTYVNS 191
Query: 221 VSSLSPTRHFIIHSRKALLNGISPAENRTI------PPLK-------YEYYYALLRDFPD 267
V+S+ + ++ + + +K +Y L +
Sbjct: 192 VNSIGNGLFIDPEAESVVI------KPKDGFGGIGGAYIKPTALANVRAFYTRLKPEIQ- 244
Query: 268 LTFTLN----GGINTVDEVNAALRKGAHHVMVGRAA-YQNP 303
GGI T + L GA + +G A + P
Sbjct: 245 ------IIGTGGIETGQDAFEHLLCGATMLQIGTALHKEGP 279
|
| >1ep3_A Dihydroorotate dehydrogenase B (PYRD subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ep2_A* 1ep1_A* Length = 311 | Back alignment and structure |
|---|
Score = 41.0 bits (97), Expect = 3e-04
Identities = 25/86 (29%), Positives = 39/86 (45%), Gaps = 6/86 (6%)
Query: 116 RFLAFSPEQHPIVLQIGGSNL-DNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVS 174
+L + + PI+ + GS D +A ++ +A N I LN CP+ K G FG
Sbjct: 90 PWLNENFPELPIIANVAGSEEADYVAVCAKIGDAANVKAIELNISCPNVKHGGQA-FGT- 147
Query: 175 LMLDPKFVGEAMSVIAANTNVPVSVK 200
DP+ + A + VP+ VK
Sbjct: 148 ---DPEVAAALVKACKAVSKVPLYVK 170
|
| >3oix_A Putative dihydroorotate dehydrogenase; dihydrooro oxidase; TIM barrel, oxidoreductase; HET: MLY FMN; 2.40A {Streptococcus mutans} Length = 345 | Back alignment and structure |
|---|
Score = 40.2 bits (94), Expect = 6e-04
Identities = 32/211 (15%), Positives = 59/211 (27%), Gaps = 33/211 (15%)
Query: 113 NLDRFLAF--SPEQHPIVLQIGGSNL-DNLAKATELANAYNYDEINLNCGCPSPKVAGHG 169
LD P+ L + G + + + + + LN CP+ V G
Sbjct: 115 YLDYVTELQKQPDSKNHFLSLVGMSPEETHTILXMVEASKYQGLVELNLSCPN--VPGXP 172
Query: 170 CFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQL-------CDFIYKVS 222
D + + +S + P+ +K D F+ ++
Sbjct: 173 QIAY----DFETTDQILSEVFTYFTKPLGIKLPPYFDIVHFDQAAAIFNXYPLTFVNCIN 228
Query: 223 SLSPTRHFIIHSRKALL-NGISPAENRTIPPLK----YEYYYALLRDFP----DLTFTLN 273
S+ + NG + P + +Y L
Sbjct: 229 SIGNGLVIEDETVVIXPKNGFGGIGGDYVKPTALANVHAFYKRLNPSIQIIGT------- 281
Query: 274 GGINTVDEVNAALRKGAHHVMVGRAA-YQNP 303
GG+ T + + GA V +G A + P
Sbjct: 282 GGVXTGRDAFEHILCGASMVQIGTALHQEGP 312
|
| >2e6f_A Dihydroorotate dehydrogenase; chagas disease, pyrimidine biosynthesis, fumarate reductase, energy metabolism, redox homeostasis, flavoprotein; HET: FMN OXC; 1.26A {Trypanosoma cruzi} PDB: 2e6a_A* 2e6d_A* 2e68_A* 2djl_A* 2djx_A* 3c3n_A* 2b4g_A* 3c61_A* 3mhu_A* 3mjy_A* Length = 314 | Back alignment and structure |
|---|
Score = 39.5 bits (93), Expect = 8e-04
Identities = 36/209 (17%), Positives = 64/209 (30%), Gaps = 53/209 (25%)
Query: 126 PIVLQIGGSNL-DNLAKATELANAYN----YDEINLNCGCPSPKVAGHGCFGVSLMLDPK 180
P+ L I G ++ +N+A LA E+NL+C P V G D +
Sbjct: 95 PLFLSISGLSVEENVAMVRRLAPVAQEKGVLLELNLSC----PNVPGKPQVAY----DFE 146
Query: 181 FVGEAMSVIAANTNVPVSVKCRIGVDDHD--------SYNQLCDFIYKVSSLSPTRHFII 232
+ + ++ +P VK D + L F+ V+S+
Sbjct: 147 AMRTYLQQVSLAYGLPFGVKMPPYFDIAHFDTAAAVLNEFPLVKFVTCVNSVGNGLVIDA 206
Query: 233 HSRKALLNGISPAENRTI------PPLK-------YEYYYALLRDFPDLTFTLN----GG 275
S ++ + + +Y D GG
Sbjct: 207 ESESVVIK------PKQGFGGLGGKYILPTALANVNA-FYRRCPDKL-------VFGCGG 252
Query: 276 INTVDEVNAALRKGAHHVMVGRAA-YQNP 303
+ + ++ + GA V VG A + P
Sbjct: 253 VYSGEDAFLHILAGASMVQVGTALQEEGP 281
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 326 | |||
| 3b0p_A | 350 | TRNA-dihydrouridine synthase; TIM barrel, oxidored | 100.0 | |
| 3gr7_A | 340 | NADPH dehydrogenase; flavin, FMN, beta-alpha-barre | 100.0 | |
| 1z41_A | 338 | YQJM, probable NADH-dependent flavin oxidoreductas | 100.0 | |
| 3l5a_A | 419 | NADH/flavin oxidoreductase/NADH oxidase; OLD yello | 100.0 | |
| 3hgj_A | 349 | Chromate reductase; TIM barrel, oxidoreductase; HE | 100.0 | |
| 3kru_A | 343 | NADH:flavin oxidoreductase/NADH oxidase; homotetra | 100.0 | |
| 3l5l_A | 363 | Xenobiotic reductase A; TIM barrel, oxidoreductase | 100.0 | |
| 1vyr_A | 364 | Pentaerythritol tetranitrate reductase; oxidoreduc | 100.0 | |
| 2r14_A | 377 | Morphinone reductase; H-tunnelling, flavoprotein, | 100.0 | |
| 2hsa_B | 402 | 12-oxophytodienoate reductase 3; alpha beta 8 barr | 100.0 | |
| 2gou_A | 365 | Oxidoreductase, FMN-binding; OLD yeallow enzyme, f | 100.0 | |
| 1vhn_A | 318 | Putative flavin oxidoreducatase; structural genomi | 100.0 | |
| 1icp_A | 376 | OPR1, 12-oxophytodienoate reductase 1; beta-alpha- | 100.0 | |
| 4ab4_A | 362 | Xenobiotic reductase B; oxidoreductase, OLD yellow | 100.0 | |
| 3gka_A | 361 | N-ethylmaleimide reductase; decode biostructures, | 100.0 | |
| 1o94_A | 729 | Tmadh, trimethylamine dehydrogenase; electron tran | 100.0 | |
| 1ps9_A | 671 | 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel | 100.0 | |
| 3k30_A | 690 | Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi | 100.0 | |
| 4a3u_A | 358 | NCR, NADH\:flavin oxidoreductase/NADH oxidase; HET | 100.0 | |
| 3aty_A | 379 | Tcoye, prostaglandin F2A synthase; alpha/beta barr | 100.0 | |
| 4gbu_A | 400 | NADPH dehydrogenase 1; alpha/beta barrel, enenone | 100.0 | |
| 3tjl_A | 407 | NADPH dehydrogenase; OLD yellow enzyme, flavin mon | 100.0 | |
| 2e6f_A | 314 | Dihydroorotate dehydrogenase; chagas disease, pyri | 99.97 | |
| 1jub_A | 311 | Dihydroorotate dehydrogenase A; homodimer, alpha-b | 99.97 | |
| 1f76_A | 336 | Dihydroorotate dehydrogenase; monomer, alpha-beta- | 99.97 | |
| 4ef8_A | 354 | Dihydroorotate dehydrogenase; phenyl isothiocyanat | 99.97 | |
| 1ep3_A | 311 | Dihydroorotate dehydrogenase B (PYRD subunit); het | 99.96 | |
| 3oix_A | 345 | Putative dihydroorotate dehydrogenase; dihydrooro | 99.96 | |
| 1tv5_A | 443 | Dhodehase, dihydroorotate dehydrogenase homolog, m | 99.96 | |
| 3zwt_A | 367 | Dihydroorotate dehydrogenase (quinone), mitochond; | 99.95 | |
| 1gte_A | 1025 | Dihydropyrimidine dehydrogenase; electron transfer | 99.94 | |
| 3i65_A | 415 | Dihydroorotate dehydrogenase homolog, mitochondria | 99.93 | |
| 3tjx_A | 354 | Dihydroorotate dehydrogenase; PYRD, dhodh, lmdhodh | 99.89 | |
| 2nli_A | 368 | Lactate oxidase; flavoenzyme, FMN, D-lactate, oxid | 99.87 | |
| 2z6i_A | 332 | Trans-2-enoyl-ACP reductase II; fatty acid synthes | 99.87 | |
| 1p0k_A | 349 | Isopentenyl-diphosphate delta-isomerase; terpene b | 99.87 | |
| 1gox_A | 370 | (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoredu | 99.84 | |
| 1kbi_A | 511 | Cytochrome B2, L-LCR; flavocytochrome B2, electron | 99.83 | |
| 2nzl_A | 392 | Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, G | 99.82 | |
| 1vcf_A | 332 | Isopentenyl-diphosphate delta-isomerase; TIM barre | 99.79 | |
| 3bo9_A | 326 | Putative nitroalkan dioxygenase; TM0800, structura | 99.78 | |
| 3bw2_A | 369 | 2-nitropropane dioxygenase; TIM barrel, oxidoreduc | 99.78 | |
| 2gjl_A | 328 | Hypothetical protein PA1024; 2-nitropropane dioxyg | 99.77 | |
| 1ypf_A | 336 | GMP reductase; GUAC, purines, pyrimidines, nucleos | 99.77 | |
| 3sr7_A | 365 | Isopentenyl-diphosphate delta-isomerase; isopenten | 99.74 | |
| 3vkj_A | 368 | Isopentenyl-diphosphate delta-isomerase; type 2 is | 99.73 | |
| 3khj_A | 361 | Inosine-5-monophosphate dehydrogenase; enzyme-inhi | 99.73 | |
| 1p4c_A | 380 | L(+)-mandelate dehydrogenase; TIM barrel, hydroxy | 99.73 | |
| 1eep_A | 404 | Inosine 5'-monophosphate dehydrogenase; alpha-beta | 99.72 | |
| 4fo4_A | 366 | Inosine 5'-monophosphate dehydrogenase; structural | 99.66 | |
| 3r2g_A | 361 | Inosine 5'-monophosphate dehydrogenase; structural | 99.65 | |
| 3ffs_A | 400 | Inosine-5-monophosphate dehydrogenase; beta-alpha | 99.65 | |
| 2qr6_A | 393 | IMP dehydrogenase/GMP reductase; NP_599840.1, G re | 99.61 | |
| 2c6q_A | 351 | GMP reductase 2; TIM barrel, metal-binding, NADP, | 99.56 | |
| 3sgz_A | 352 | Hydroxyacid oxidase 2; flavoprotein, homology, INH | 99.56 | |
| 4avf_A | 490 | Inosine-5'-monophosphate dehydrogenase; oxidoreduc | 99.51 | |
| 4fxs_A | 496 | Inosine-5'-monophosphate dehydrogenase; structural | 99.5 | |
| 1mzh_A | 225 | Deoxyribose-phosphate aldolase; alpha-beta barrel, | 99.5 | |
| 3o07_A | 291 | Pyridoxine biosynthesis protein SNZ1; (beta/alpha) | 99.4 | |
| 2y88_A | 244 | Phosphoribosyl isomerase A; aromatic amino acid bi | 99.34 | |
| 2yzr_A | 330 | Pyridoxal biosynthesis lyase PDXS; redox protein, | 99.31 | |
| 2uva_G | 2060 | Fatty acid synthase beta subunits; fungal, dehydra | 99.26 | |
| 1wv2_A | 265 | Thiazole moeity, thiazole biosynthesis protein THI | 99.26 | |
| 1vzw_A | 244 | Phosphoribosyl isomerase A; histidine biosynthesis | 99.24 | |
| 1jcn_A | 514 | Inosine monophosphate dehydrogenase I; IMPD, IMPDH | 99.23 | |
| 1jvn_A | 555 | Glutamine, bifunctional histidine biosynthesis pro | 99.16 | |
| 3tdn_A | 247 | FLR symmetric alpha-beta TIM barrel; symmetric sup | 99.15 | |
| 1xm3_A | 264 | Thiazole biosynthesis protein THIG; structural gen | 99.14 | |
| 2qjg_A | 273 | Putative aldolase MJ0400; beta-alpha barrel, lyase | 99.13 | |
| 1vrd_A | 494 | Inosine-5'-monophosphate dehydrogenase; TM1347, st | 99.13 | |
| 1y0e_A | 223 | Putative N-acetylmannosamine-6-phosphate 2-epimer; | 99.12 | |
| 3usb_A | 511 | Inosine-5'-monophosphate dehydrogenase; structural | 99.12 | |
| 2uv8_G | 2051 | Fatty acid synthase subunit beta (FAS1); fatty aci | 99.07 | |
| 1thf_D | 253 | HISF protein; thermophIle, TIM-barrel, histidine b | 99.05 | |
| 2agk_A | 260 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) me | 99.05 | |
| 1yxy_A | 234 | Putative N-acetylmannosamine-6-phosphate 2-epimer; | 99.04 | |
| 2pgw_A | 384 | Muconate cycloisomerase; enolase superfamily, octa | 99.03 | |
| 3q58_A | 229 | N-acetylmannosamine-6-phosphate 2-epimerase; TIM b | 99.01 | |
| 1ea0_A | 1479 | Glutamate synthase [NADPH] large chain; oxidoreduc | 99.0 | |
| 3igs_A | 232 | N-acetylmannosamine-6-phosphate 2-epimerase 2; ene | 98.99 | |
| 1ofd_A | 1520 | Ferredoxin-dependent glutamate synthase 2; oxidore | 98.98 | |
| 3tdn_A | 247 | FLR symmetric alpha-beta TIM barrel; symmetric sup | 98.97 | |
| 1ka9_F | 252 | Imidazole glycerol phosphtate synthase; riken stru | 98.97 | |
| 1h5y_A | 253 | HISF; histidine biosynthesis, TIM-barrel; 2.0A {Py | 98.96 | |
| 2nv1_A | 305 | Pyridoxal biosynthesis lyase PDXS; (beta/alpha)8-b | 98.95 | |
| 1qo2_A | 241 | Molecule: N-((5-phosphoribosyl)-formimino)-5-amino | 98.94 | |
| 2htm_A | 268 | Thiazole biosynthesis protein THIG; thiamin biosyn | 98.93 | |
| 2gl5_A | 410 | Putative dehydratase protein; structural genomics, | 98.92 | |
| 1zfj_A | 491 | Inosine monophosphate dehydrogenase; IMPDH, CBS do | 98.89 | |
| 4af0_A | 556 | Inosine-5'-monophosphate dehydrogenase; oxidoreduc | 98.88 | |
| 3zen_D | 3089 | Fatty acid synthase; transferase, mycolic acid bio | 98.86 | |
| 2poz_A | 392 | Putative dehydratase; octamer, structural genomics | 98.85 | |
| 3qja_A | 272 | IGPS, indole-3-glycerol phosphate synthase; struct | 98.82 | |
| 2w6r_A | 266 | Imidazole glycerol phosphate synthase subunit HISF | 98.82 | |
| 1wa3_A | 205 | 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, | 98.81 | |
| 1rd5_A | 262 | Tryptophan synthase alpha chain, chloroplast; hydr | 98.8 | |
| 1mdl_A | 359 | Mandelate racemase; isomerase, mandelate pathway, | 98.8 | |
| 1geq_A | 248 | Tryptophan synthase alpha-subunit; hyperthermophIl | 98.77 | |
| 2ovl_A | 371 | Putative racemase; structural genomics, PSI-2, pro | 98.76 | |
| 1rvk_A | 382 | Isomerase/lactonizing enzyme; enolase superfamily, | 98.76 | |
| 2rdx_A | 379 | Mandelate racemase/muconate lactonizing enzyme, P; | 98.76 | |
| 2nql_A | 388 | AGR_PAT_674P, isomerase/lactonizing enzyme; enolas | 98.75 | |
| 2qq6_A | 410 | Mandelate racemase/muconate lactonizing enzyme- li | 98.7 | |
| 2p8b_A | 369 | Mandelate racemase/muconate lactonizing enzyme fam | 98.66 | |
| 2og9_A | 393 | Mandelate racemase/muconate lactonizing enzyme; NY | 98.66 | |
| 1qo2_A | 241 | Molecule: N-((5-phosphoribosyl)-formimino)-5-amino | 98.65 | |
| 2qgy_A | 391 | Enolase from the environmental genome shotgun sequ | 98.65 | |
| 3tsm_A | 272 | IGPS, indole-3-glycerol phosphate synthase; struct | 98.64 | |
| 2zbt_A | 297 | Pyridoxal biosynthesis lyase PDXS; pyridoxine bios | 98.62 | |
| 3vnd_A | 267 | TSA, tryptophan synthase alpha chain; psychrophili | 98.62 | |
| 1qop_A | 268 | Tryptophan synthase alpha chain; lyase, carbon-oxy | 98.61 | |
| 2ox4_A | 403 | Putative mandelate racemase; enolase, dehydratase, | 98.6 | |
| 4adt_A | 297 | Pyridoxine biosynthetic enzyme PDX1 homologue, PU; | 98.6 | |
| 2hzg_A | 401 | Mandelate racemase/muconate lactonizing enzyme/EN | 98.59 | |
| 1thf_D | 253 | HISF protein; thermophIle, TIM-barrel, histidine b | 98.59 | |
| 2qdd_A | 378 | Mandelate racemase/muconate lactonizing enzyme; en | 98.59 | |
| 3vk5_A | 286 | MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {S | 98.58 | |
| 1nu5_A | 370 | Chloromuconate cycloisomerase; enzyme, dehalogenat | 98.58 | |
| 2o56_A | 407 | Putative mandelate racemase; dehydratase, structur | 98.57 | |
| 3oa3_A | 288 | Aldolase; structural genomics, seattle structural | 98.56 | |
| 2ps2_A | 371 | Putative mandelate racemase/muconate lactonizing e | 98.54 | |
| 2pp0_A | 398 | L-talarate/galactarate dehydratase; enolase superf | 98.53 | |
| 2v82_A | 212 | 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; l | 98.52 | |
| 3stp_A | 412 | Galactonate dehydratase, putative; PSI biology, st | 98.52 | |
| 1tkk_A | 366 | Similar to chloromuconate cycloisomerase; epimeras | 98.51 | |
| 3vzx_A | 228 | Heptaprenylglyceryl phosphate synthase; biosynthes | 98.5 | |
| 3ozy_A | 389 | Putative mandelate racemase; beta-alpha barrel, en | 98.5 | |
| 1xg4_A | 295 | Probable methylisocitrate lyase; 2-methylisocitrat | 98.49 | |
| 1ka9_F | 252 | Imidazole glycerol phosphtate synthase; riken stru | 98.49 | |
| 2qde_A | 397 | Mandelate racemase/muconate lactonizing enzyme FA | 98.49 | |
| 3nav_A | 271 | Tryptophan synthase alpha chain; alpha subunit, st | 98.49 | |
| 3ndo_A | 231 | Deoxyribose-phosphate aldolase; ssgcid, NIH, niaid | 98.48 | |
| 3f4w_A | 211 | Putative hexulose 6 phosphate synthase; humps, mal | 98.46 | |
| 3ngj_A | 239 | Deoxyribose-phosphate aldolase; lyase, structural | 98.45 | |
| 3r12_A | 260 | Deoxyribose-phosphate aldolase; TIM beta/alpha-bar | 98.44 | |
| 2oz8_A | 389 | MLL7089 protein; structural genomics, unknown func | 98.44 | |
| 1tzz_A | 392 | Hypothetical protein L1841; structural genomics, m | 98.43 | |
| 2gdq_A | 382 | YITF; mandelate racemase/muconate lactonizing enzy | 98.43 | |
| 2y88_A | 244 | Phosphoribosyl isomerase A; aromatic amino acid bi | 98.42 | |
| 1w8s_A | 263 | FBP aldolase, fructose-bisphosphate aldolase class | 98.42 | |
| 1vzw_A | 244 | Phosphoribosyl isomerase A; histidine biosynthesis | 98.41 | |
| 3bjs_A | 428 | Mandelate racemase/muconate lactonizing enzyme; en | 98.38 | |
| 3eez_A | 378 | Putative mandelate racemase/muconate lactonizing e | 98.37 | |
| 1h1y_A | 228 | D-ribulose-5-phosphate 3-epimerase; oxidative pent | 98.37 | |
| 1yad_A | 221 | Regulatory protein TENI; TIM barrel, transcription | 98.36 | |
| 3sjn_A | 374 | Mandelate racemase/muconate lactonizing protein; e | 98.36 | |
| 1ub3_A | 220 | Aldolase protein; schiff base, deoxyribose phospha | 98.36 | |
| 3ovp_A | 228 | Ribulose-phosphate 3-epimerase; iron binding, isom | 98.34 | |
| 3rcy_A | 433 | Mandelate racemase/muconate lactonizing enzyme-LI | 98.34 | |
| 2hxt_A | 441 | L-fuconate dehydratase; enolase superfamily, D-ery | 98.34 | |
| 4gj1_A | 243 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) me | 98.34 | |
| 1h5y_A | 253 | HISF; histidine biosynthesis, TIM-barrel; 2.0A {Py | 98.33 | |
| 1tqj_A | 230 | Ribulose-phosphate 3-epimerase; beta-alpha barrel | 98.33 | |
| 1viz_A | 240 | PCRB protein homolog; structural genomics, unknown | 98.33 | |
| 2zad_A | 345 | Muconate cycloisomerase; muconate lactonizing enzy | 98.32 | |
| 1me8_A | 503 | Inosine-5'-monophosphate dehydrogenase; alpha beta | 98.28 | |
| 2yw3_A | 207 | 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deox | 98.28 | |
| 2f6u_A | 234 | GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate sy | 98.27 | |
| 2cu0_A | 486 | Inosine-5'-monophosphate dehydrogenase; structural | 98.26 | |
| 1vc4_A | 254 | Indole-3-glycerol phosphate synthase; lyase, trypt | 98.26 | |
| 2ekc_A | 262 | AQ_1548, tryptophan synthase alpha chain; structur | 98.24 | |
| 3w01_A | 235 | Heptaprenylglyceryl phosphate synthase; biosynthes | 98.23 | |
| 2fli_A | 220 | Ribulose-phosphate 3-epimerase; (beta/alpha)8-barr | 98.23 | |
| 3rr1_A | 405 | GALD, putative D-galactonate dehydratase; enolase, | 98.21 | |
| 3o63_A | 243 | Probable thiamine-phosphate pyrophosphorylase; thi | 98.2 | |
| 1sjd_A | 368 | N-acylamino acid racemase; lyase, isomerase; HET: | 98.17 | |
| 3sbf_A | 401 | Mandelate racemase / muconate lactonizing enzyme; | 98.17 | |
| 1ujp_A | 271 | Tryptophan synthase alpha chain; riken structural | 98.17 | |
| 1rpx_A | 230 | Protein (ribulose-phosphate 3-epimerase); chloropl | 98.16 | |
| 3ajx_A | 207 | 3-hexulose-6-phosphate synthase; HPS, OMPDC supraf | 98.15 | |
| 4dwd_A | 393 | Mandelate racemase/muconate lactonizing enzyme, C | 98.14 | |
| 2tps_A | 227 | Protein (thiamin phosphate synthase); thiamin bios | 98.14 | |
| 3r4e_A | 418 | Mandelate racemase/muconate lactonizing enzyme; en | 98.13 | |
| 4e5t_A | 404 | Mandelate racemase / muconate lactonizing enzyme, | 98.12 | |
| 3inp_A | 246 | D-ribulose-phosphate 3-epimerase; IDP02542, isomer | 98.1 | |
| 3jva_A | 354 | Dipeptide epimerase; enolase superfamily, isomeras | 98.05 | |
| 1n7k_A | 234 | Deoxyribose-phosphate aldolase; A.pernix, tetramer | 98.05 | |
| 3i4k_A | 383 | Muconate lactonizing enzyme; structural genomics, | 98.03 | |
| 4gj1_A | 243 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) me | 98.02 | |
| 3v3w_A | 424 | Starvation sensing protein RSPA; enolase, enzyme f | 98.02 | |
| 4e4u_A | 412 | Mandalate racemase/muconate lactonizing enzyme; ma | 98.0 | |
| 1to3_A | 304 | Putative aldolase YIHT; beta-alpha barrel, structu | 98.0 | |
| 3tji_A | 422 | Mandelate racemase/muconate lactonizing enzyme, N | 98.0 | |
| 2w6r_A | 266 | Imidazole glycerol phosphate synthase subunit HISF | 97.99 | |
| 3vcn_A | 425 | Mannonate dehydratase; enolase, magnesium binding | 97.97 | |
| 1tqx_A | 227 | D-ribulose-5-phosphate 3-epimerase, putative; stru | 97.97 | |
| 3go2_A | 409 | Putative L-alanine-DL-glutamate epimerase; structu | 97.95 | |
| 3glc_A | 295 | Aldolase LSRF; TIM barrel, lyase, schiff base; HET | 97.95 | |
| 3tj4_A | 372 | Mandelate racemase; enolase, dehydratase, enzyme f | 97.91 | |
| 3ddm_A | 392 | Putative mandelate racemase/muconate lactonizing e | 97.91 | |
| 4a29_A | 258 | Engineered retro-aldol enzyme RA95.0; de novo prot | 97.91 | |
| 3p3b_A | 392 | Mandelate racemase/muconate lactonizing protein; e | 97.89 | |
| 4e4f_A | 426 | Mannonate dehydratase; magnesium binding, enzyme f | 97.86 | |
| 1r0m_A | 375 | N-acylamino acid racemase; isomerase; 1.30A {Deino | 97.85 | |
| 3ro6_B | 356 | Putative chloromuconate cycloisomerase; TIM barrel | 97.84 | |
| 3mqt_A | 394 | Mandelate racemase/muconate lactonizing protein; P | 97.83 | |
| 1xi3_A | 215 | Thiamine phosphate pyrophosphorylase; structural g | 97.82 | |
| 2zc8_A | 369 | N-acylamino acid racemase; octamer, TIM beta/alpha | 97.81 | |
| 3toy_A | 383 | Mandelate racemase/muconate lactonizing enzyme FA | 97.81 | |
| 3ugv_A | 390 | Enolase; enzyme function initiative, EFI, lyase; 2 | 97.8 | |
| 3t6c_A | 440 | RSPA, putative MAND family dehydratase; enolase, m | 97.79 | |
| 3q45_A | 368 | Mandelate racemase/muconate lactonizing enzyme FA | 97.78 | |
| 3mkc_A | 394 | Racemase; metabolic process, PSI2, NYSGXRC, struct | 97.77 | |
| 2p10_A | 286 | MLL9387 protein; putative phosphonopyruvate hydrol | 97.76 | |
| 3my9_A | 377 | Muconate cycloisomerase; structural genomics, PSI- | 97.75 | |
| 3tha_A | 252 | Tryptophan synthase alpha chain; structural genomi | 97.75 | |
| 3gd6_A | 391 | Muconate cycloisomerase; structural genomics, NYSG | 97.74 | |
| 3cwo_X | 237 | Beta/alpha-barrel protein based on 1THF and 1TMY; | 97.74 | |
| 3dg3_A | 367 | Muconate cycloisomerase; muconate lactonizing enzy | 97.71 | |
| 2a4a_A | 281 | Deoxyribose-phosphate aldolase; lyase, TIM beta/al | 97.71 | |
| 3ctl_A | 231 | D-allulose-6-phosphate 3-epimerase; D-glucitol 6-p | 97.7 | |
| 1chr_A | 370 | Chloromuconate cycloisomerase; 3.00A {Ralstonia eu | 97.68 | |
| 2czd_A | 208 | Orotidine 5'-phosphate decarboxylase; pyrimidine b | 97.67 | |
| 1i4n_A | 251 | Indole-3-glycerol phosphate synthase; thermostable | 97.64 | |
| 3i6e_A | 385 | Muconate cycloisomerase I; structural genomics, NY | 97.61 | |
| 2h6r_A | 219 | Triosephosphate isomerase; beta-alpha barrel; 2.30 | 97.58 | |
| 1vcv_A | 226 | Probable deoxyribose-phosphate aldolase; DERA, hyp | 97.58 | |
| 3fv9_G | 386 | Mandelate racemase/muconate lactonizing enzyme; st | 97.57 | |
| 3r0u_A | 379 | Enzyme of enolase superfamily; structural genomics | 97.56 | |
| 1p1x_A | 260 | Deoxyribose-phosphate aldolase; alpha-beta barrel, | 97.56 | |
| 3tcs_A | 388 | Racemase, putative; PSI-biology, nysgrc, structura | 97.54 | |
| 4e38_A | 232 | Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho | 97.52 | |
| 2qr6_A | 393 | IMP dehydrogenase/GMP reductase; NP_599840.1, G re | 97.5 | |
| 3mwc_A | 400 | Mandelate racemase/muconate lactonizing protein; e | 97.41 | |
| 1wbh_A | 214 | KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} | 97.4 | |
| 1pii_A | 452 | N-(5'phosphoribosyl)anthranilate isomerase; bifunc | 97.37 | |
| 3dip_A | 410 | Enolase; structural genomics, isomerase, PSI-2, pr | 97.37 | |
| 1jvn_A | 555 | Glutamine, bifunctional histidine biosynthesis pro | 97.35 | |
| 3ih1_A | 305 | Methylisocitrate lyase; alpha-beta structure, TIM- | 97.35 | |
| 4hnl_A | 421 | Mandelate racemase/muconate lactonizing enzyme; de | 97.34 | |
| 3lab_A | 217 | Putative KDPG (2-keto-3-deoxy-6-phosphogluconate) | 97.32 | |
| 4eiv_A | 297 | Deoxyribose-phosphate aldolase; chemotherapy, brai | 97.27 | |
| 1vhc_A | 224 | Putative KHG/KDPG aldolase; structural genomics, u | 97.23 | |
| 3b8i_A | 287 | PA4872 oxaloacetate decarboxylase; alpha/beta barr | 97.23 | |
| 3nl6_A | 540 | Thiamine biosynthetic bifunctional enzyme; thiamin | 97.23 | |
| 3ceu_A | 210 | Thiamine phosphate pyrophosphorylase; TIM barrel-l | 97.2 | |
| 3cu2_A | 237 | Ribulose-5-phosphate 3-epimerase; YP_718263.1, rib | 97.19 | |
| 3jr2_A | 218 | Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulon | 97.19 | |
| 3eoo_A | 298 | Methylisocitrate lyase; seattle structural genomic | 97.15 | |
| 1qap_A | 296 | Quinolinic acid phosphoribosyltransferase; glycosy | 97.09 | |
| 3dgb_A | 382 | Muconate cycloisomerase; muconate lactonizing enzy | 97.08 | |
| 4e8g_A | 391 | Enolase, mandelate racemase/muconate lactonizing e | 97.06 | |
| 3ik4_A | 365 | Mandelate racemase/muconate lactonizing protein; s | 97.02 | |
| 4a35_A | 441 | Mitochondrial enolase superfamily member 1; isomer | 97.02 | |
| 3m47_A | 228 | Orotidine 5'-phosphate decarboxylase; orotidine 5' | 96.98 | |
| 4h3d_A | 258 | 3-dehydroquinate dehydratase; structural genomics, | 96.98 | |
| 1q6o_A | 216 | Humps, 3-keto-L-gulonate 6-phosphate decarboxylase | 96.97 | |
| 4dxk_A | 400 | Mandelate racemase / muconate lactonizing enzyme p | 96.96 | |
| 3ru6_A | 303 | Orotidine 5'-phosphate decarboxylase; structural g | 96.94 | |
| 3iv3_A | 332 | Tagatose 1,6-diphosphate aldolase 2; TIM barrel, p | 96.91 | |
| 1mxs_A | 225 | KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate a | 96.9 | |
| 1zlp_A | 318 | PSR132, petal death protein; TIM-barrel, helix swa | 96.88 | |
| 1yxy_A | 234 | Putative N-acetylmannosamine-6-phosphate 2-epimer; | 96.88 | |
| 3fcp_A | 381 | L-Ala-D/L-Glu epimerase, A muconate lactonizing en | 96.82 | |
| 3o1n_A | 276 | 3-dehydroquinate dehydratase; structural genomics, | 96.82 | |
| 2hjp_A | 290 | Phosphonopyruvate hydrolase; phosporus-Ca cleavage | 96.78 | |
| 2agk_A | 260 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) me | 96.76 | |
| 4dye_A | 398 | Isomerase; enolase family protein, EFI, enzym func | 96.66 | |
| 1x1o_A | 286 | Nicotinate-nucleotide pyrophosphorylase; transfera | 96.65 | |
| 3kts_A | 192 | Glycerol uptake operon antiterminator regulatory; | 96.62 | |
| 3lye_A | 307 | Oxaloacetate acetyl hydrolase; (alpha/beta)8 barre | 96.62 | |
| 2b7n_A | 273 | Probable nicotinate-nucleotide pyrophosphorylase; | 96.62 | |
| 1s2w_A | 295 | Phosphoenolpyruvate phosphomutase; phosphonopyruva | 96.59 | |
| 2yyu_A | 246 | Orotidine 5'-phosphate decarboxylase; TIM barrel, | 96.54 | |
| 3ve9_A | 215 | Orotidine-5'-phosphate decarboxylase; TIM barrel f | 96.51 | |
| 3tr2_A | 239 | Orotidine 5'-phosphate decarboxylase; purines, pyr | 96.5 | |
| 3fa4_A | 302 | 2,3-dimethylmalate lyase; alpha/beta barrel, helix | 96.42 | |
| 3tfx_A | 259 | Orotidine 5'-phosphate decarboxylase; PSI-biology, | 96.39 | |
| 1vc4_A | 254 | Indole-3-glycerol phosphate synthase; lyase, trypt | 96.39 | |
| 1vqt_A | 213 | Orotidine 5'-phosphate decarboxylase; TM0332, stru | 96.39 | |
| 1eix_A | 245 | Orotidine 5'-monophosphate decarboxylase; alpha-be | 96.36 | |
| 1sfl_A | 238 | 3-dehydroquinate dehydratase; 3-dehydroquinase, en | 96.35 | |
| 2ze3_A | 275 | DFA0005; organic waste LEFT-OVER decomposition, al | 96.31 | |
| 1wuf_A | 393 | Hypothetical protein LIN2664; structural genomics, | 96.3 | |
| 3q58_A | 229 | N-acetylmannosamine-6-phosphate 2-epimerase; TIM b | 96.3 | |
| 3khj_A | 361 | Inosine-5-monophosphate dehydrogenase; enzyme-inhi | 96.29 | |
| 2yr1_A | 257 | 3-dehydroquinate dehydratase; amino acid biosynthe | 96.29 | |
| 4fo4_A | 366 | Inosine 5'-monophosphate dehydrogenase; structural | 96.23 | |
| 2jbm_A | 299 | Nicotinate-nucleotide pyrophosphorylase; NAD, enzy | 96.18 | |
| 1dbt_A | 239 | Orotidine 5'-phosphate decarboxylase; UMP, TIM bar | 96.17 | |
| 3exr_A | 221 | RMPD (hexulose-6-phosphate synthase); beta barrel, | 96.12 | |
| 1hg3_A | 225 | Triosephosphate isomerase; thermostability, tetram | 96.07 | |
| 3u9i_A | 393 | Mandelate racemase/muconate lactonizing enzyme, C | 96.07 | |
| 3ldv_A | 255 | Orotidine 5'-phosphate decarboxylase; structural g | 96.05 | |
| 1oy0_A | 281 | Ketopantoate hydroxymethyltransferase; domain swap | 95.98 | |
| 3tsm_A | 272 | IGPS, indole-3-glycerol phosphate synthase; struct | 95.82 | |
| 2ozt_A | 332 | TLR1174 protein; structural genomics, O-succinylbe | 95.78 | |
| 3ih1_A | 305 | Methylisocitrate lyase; alpha-beta structure, TIM- | 95.77 | |
| 3qja_A | 272 | IGPS, indole-3-glycerol phosphate synthase; struct | 95.66 | |
| 4h1z_A | 412 | Enolase Q92ZS5; dehydratase, magnesium binding sit | 95.65 | |
| 1vkf_A | 188 | Glycerol uptake operon antiterminator-related Pro; | 95.65 | |
| 3r2g_A | 361 | Inosine 5'-monophosphate dehydrogenase; structural | 95.59 | |
| 4dbe_A | 222 | Orotidine 5'-phosphate decarboxylase; TIM barrel, | 95.58 | |
| 3s5s_A | 389 | Mandelate racemase/muconate lactonizing enzyme FA | 95.56 | |
| 3igs_A | 232 | N-acetylmannosamine-6-phosphate 2-epimerase 2; ene | 95.55 | |
| 2chr_A | 370 | Chloromuconate cycloisomerase; 3.00A {Cupriavidus | 95.55 | |
| 3fok_A | 307 | Uncharacterized protein CGL0159; CGL0159 ,brevibac | 95.54 | |
| 4hpn_A | 378 | Putative uncharacterized protein; enolase, enzyme | 95.49 | |
| 4aaj_A | 228 | N-(5'-phosphoribosyl)anthranilate isomerase; alpha | 95.48 | |
| 3lab_A | 217 | Putative KDPG (2-keto-3-deoxy-6-phosphogluconate) | 95.42 | |
| 2pge_A | 377 | MENC; OSBS, NYSGXRC, PSI-II, structural genomics, | 95.42 | |
| 3vav_A | 275 | 3-methyl-2-oxobutanoate hydroxymethyltransferase; | 95.41 | |
| 1v5x_A | 203 | PRA isomerase, phosphoribosylanthranilate isomeras | 95.39 | |
| 3paj_A | 320 | Nicotinate-nucleotide pyrophosphorylase, carboxyl; | 95.39 | |
| 1o66_A | 275 | 3-methyl-2-oxobutanoate hydroxymethyltransferase; | 95.38 | |
| 1m3u_A | 264 | 3-methyl-2-oxobutanoate hydroxymethyltransferase; | 95.29 | |
| 4h83_A | 388 | Mandelate racemase/muconate lactonizing enzyme; st | 95.13 | |
| 3c2e_A | 294 | Nicotinate-nucleotide pyrophosphorylase; qprtase, | 95.07 | |
| 3eoo_A | 298 | Methylisocitrate lyase; seattle structural genomic | 95.07 | |
| 3tqv_A | 287 | Nicotinate-nucleotide pyrophosphorylase; glycosylt | 94.96 | |
| 3iwp_A | 287 | Copper homeostasis protein CUTC homolog; conserved | 94.89 | |
| 3cyj_A | 372 | Mandelate racemase/muconate lactonizing enzyme-LI | 94.77 | |
| 4af0_A | 556 | Inosine-5'-monophosphate dehydrogenase; oxidoreduc | 94.77 | |
| 1o4u_A | 285 | Type II quinolic acid phosphoribosyltransferase; s | 94.77 | |
| 1ypf_A | 336 | GMP reductase; GUAC, purines, pyrimidines, nucleos | 94.7 | |
| 3va8_A | 445 | Probable dehydratase; enolase, magnesium binding s | 94.69 | |
| 1o66_A | 275 | 3-methyl-2-oxobutanoate hydroxymethyltransferase; | 94.62 | |
| 1qpo_A | 284 | Quinolinate acid phosphoribosyl transferase; type | 94.61 | |
| 3qw3_A | 255 | Orotidine-5-phosphate decarboxylase/orotate phosph | 94.55 | |
| 1nsj_A | 205 | PRAI, phosphoribosyl anthranilate isomerase; therm | 94.5 | |
| 1xg4_A | 295 | Probable methylisocitrate lyase; 2-methylisocitrat | 94.49 | |
| 2bdq_A | 224 | Copper homeostasis protein CUTC; alpha beta protei | 94.49 | |
| 4e38_A | 232 | Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho | 94.45 | |
| 1wue_A | 386 | Mandelate racemase/muconate lactonizing enzyme FA | 94.45 | |
| 3vdg_A | 445 | Probable glucarate dehydratase; enolase, magnesium | 94.41 | |
| 2wqp_A | 349 | Polysialic acid capsule biosynthesis protein SIAC; | 94.41 | |
| 3flu_A | 297 | DHDPS, dihydrodipicolinate synthase; TIM barrel, b | 94.4 | |
| 1h1y_A | 228 | D-ribulose-5-phosphate 3-epimerase; oxidative pent | 94.34 | |
| 4avf_A | 490 | Inosine-5'-monophosphate dehydrogenase; oxidoreduc | 94.3 | |
| 3gnn_A | 298 | Nicotinate-nucleotide pyrophosphorylase; decode bi | 94.21 | |
| 4fxs_A | 496 | Inosine-5'-monophosphate dehydrogenase; structural | 94.1 | |
| 2vc6_A | 292 | MOSA, dihydrodipicolinate synthase; DHDPS, TIM bar | 94.05 | |
| 1twd_A | 256 | Copper homeostasis protein CUTC; TIM-like protein, | 94.04 | |
| 3qld_A | 388 | Mandelate racemase/muconate lactonizing protein; s | 93.96 | |
| 1w0m_A | 226 | TIM, triosephosphate isomerase; glycolysis, glucon | 93.92 | |
| 1zfj_A | 491 | Inosine monophosphate dehydrogenase; IMPDH, CBS do | 93.91 | |
| 1qwg_A | 251 | PSL synthase;, (2R)-phospho-3-sulfolactate synthas | 93.83 | |
| 1zlp_A | 318 | PSR132, petal death protein; TIM-barrel, helix swa | 93.82 | |
| 2ftp_A | 302 | Hydroxymethylglutaryl-COA lyase; structural genomi | 93.77 | |
| 3p0w_A | 470 | Mandelate racemase/muconate lactonizing protein; s | 93.69 | |
| 1vli_A | 385 | Spore coat polysaccharide biosynthesis protein SP; | 93.66 | |
| 3mzn_A | 450 | Glucarate dehydratase; lyase, structural genomics, | 93.57 | |
| 3vc5_A | 441 | Mandelate racemase/muconate lactonizing protein; d | 93.56 | |
| 1s2w_A | 295 | Phosphoenolpyruvate phosphomutase; phosphonopyruva | 93.54 | |
| 1xky_A | 301 | Dihydrodipicolinate synthase; TIM barrel, , lysine | 93.52 | |
| 1jcn_A | 514 | Inosine monophosphate dehydrogenase I; IMPD, IMPDH | 93.43 | |
| 2yci_X | 271 | 5-methyltetrahydrofolate corrinoid/iron sulfur PR | 93.42 | |
| 3na8_A | 315 | Putative dihydrodipicolinate synthetase; lyase; HE | 93.41 | |
| 3bo9_A | 326 | Putative nitroalkan dioxygenase; TM0800, structura | 93.37 | |
| 2hjp_A | 290 | Phosphonopyruvate hydrolase; phosporus-Ca cleavage | 93.35 | |
| 1m3u_A | 264 | 3-methyl-2-oxobutanoate hydroxymethyltransferase; | 93.34 | |
| 3l0g_A | 300 | Nicotinate-nucleotide pyrophosphorylase; ssgcid, N | 93.32 | |
| 2gjl_A | 328 | Hypothetical protein PA1024; 2-nitropropane dioxyg | 93.25 | |
| 3usb_A | 511 | Inosine-5'-monophosphate dehydrogenase; structural | 93.19 | |
| 2qiw_A | 255 | PEP phosphonomutase; structural genomics, joint ce | 93.08 | |
| 3si9_A | 315 | DHDPS, dihydrodipicolinate synthase; structural ge | 93.04 | |
| 1gox_A | 370 | (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoredu | 93.02 | |
| 2ze3_A | 275 | DFA0005; organic waste LEFT-OVER decomposition, al | 92.94 | |
| 3qze_A | 314 | DHDPS, dihydrodipicolinate synthase; alpha beta ba | 92.93 | |
| 1y0e_A | 223 | Putative N-acetylmannosamine-6-phosphate 2-epimer; | 92.88 | |
| 2vc6_A | 292 | MOSA, dihydrodipicolinate synthase; DHDPS, TIM bar | 92.87 | |
| 1rpx_A | 230 | Protein (ribulose-phosphate 3-epimerase); chloropl | 92.83 | |
| 1xky_A | 301 | Dihydrodipicolinate synthase; TIM barrel, , lysine | 92.73 | |
| 1u83_A | 276 | Phosphosulfolactate synthase; structural genomics, | 92.68 | |
| 3g8r_A | 350 | Probable spore coat polysaccharide biosynthesis P; | 92.66 | |
| 3b8i_A | 287 | PA4872 oxaloacetate decarboxylase; alpha/beta barr | 92.58 | |
| 1oy0_A | 281 | Ketopantoate hydroxymethyltransferase; domain swap | 92.55 | |
| 4h2h_A | 376 | Mandelate racemase/muconate lactonizing enzyme; en | 92.55 | |
| 3pfr_A | 455 | Mandelate racemase/muconate lactonizing protein; e | 92.55 | |
| 3bw2_A | 369 | 2-nitropropane dioxygenase; TIM barrel, oxidoreduc | 92.52 | |
| 2v82_A | 212 | 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; l | 92.51 | |
| 1o5k_A | 306 | DHDPS, dihydrodipicolinate synthase; TM1521, struc | 92.5 | |
| 1vrd_A | 494 | Inosine-5'-monophosphate dehydrogenase; TM1347, st | 92.45 | |
| 3v5c_A | 392 | Mandelate racemase/muconate lactonizing protein; e | 92.43 | |
| 3qw4_B | 453 | UMP synthase; N-terminal orotidine monophosphate d | 92.38 | |
| 3ajx_A | 207 | 3-hexulose-6-phosphate synthase; HPS, OMPDC supraf | 92.31 | |
| 3tak_A | 291 | DHDPS, dihydrodipicolinate synthase; TIM barrel, l | 92.29 | |
| 1m5w_A | 243 | Pyridoxal phosphate biosynthetic protein PDXJ; TIM | 92.27 | |
| 2ehh_A | 294 | DHDPS, dihydrodipicolinate synthase; structural ge | 92.24 | |
| 3l21_A | 304 | DHDPS, dihydrodipicolinate synthase; DAPA, dimer, | 92.21 | |
| 3ctl_A | 231 | D-allulose-6-phosphate 3-epimerase; D-glucitol 6-p | 92.2 | |
| 2z6i_A | 332 | Trans-2-enoyl-ACP reductase II; fatty acid synthes | 92.11 | |
| 2ojp_A | 292 | DHDPS, dihydrodipicolinate synthase; dimer, lysine | 92.1 | |
| 2yxg_A | 289 | DHDPS, dihydrodipicolinate synthase; MJ0244, TIM b | 92.09 | |
| 3flu_A | 297 | DHDPS, dihydrodipicolinate synthase; TIM barrel, b | 92.07 | |
| 2r8w_A | 332 | AGR_C_1641P; APC7498, dihydrodipicolinate synthase | 92.04 | |
| 3na8_A | 315 | Putative dihydrodipicolinate synthetase; lyase; HE | 92.04 | |
| 3vnd_A | 267 | TSA, tryptophan synthase alpha chain; psychrophili | 92.0 | |
| 3b4u_A | 294 | Dihydrodipicolinate synthase; structural genomics, | 91.99 | |
| 1wa3_A | 205 | 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, | 91.97 | |
| 2r8w_A | 332 | AGR_C_1641P; APC7498, dihydrodipicolinate synthase | 91.83 | |
| 3qze_A | 314 | DHDPS, dihydrodipicolinate synthase; alpha beta ba | 91.83 | |
| 2c6q_A | 351 | GMP reductase 2; TIM barrel, metal-binding, NADP, | 91.79 | |
| 3f4w_A | 211 | Putative hexulose 6 phosphate synthase; humps, mal | 91.77 | |
| 3si9_A | 315 | DHDPS, dihydrodipicolinate synthase; structural ge | 91.73 | |
| 1f6k_A | 293 | N-acetylneuraminate lyase; beta barrel; 1.60A {Hae | 91.73 | |
| 3nvt_A | 385 | 3-deoxy-D-arabino-heptulosonate 7-phosphate synth; | 91.65 | |
| 3jr2_A | 218 | Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulon | 91.6 | |
| 2qiw_A | 255 | PEP phosphonomutase; structural genomics, joint ce | 91.58 | |
| 3m5v_A | 301 | DHDPS, dihydrodipicolinate synthase; TIM barrel, c | 91.56 | |
| 3iwp_A | 287 | Copper homeostasis protein CUTC homolog; conserved | 91.46 | |
| 2v9d_A | 343 | YAGE; dihydrodipicolinic acid synthase, N-acetyl n | 91.45 | |
| 3cpr_A | 304 | Dihydrodipicolinate synthetase; (beta/alpha)8-barr | 91.43 | |
| 2wkj_A | 303 | N-acetylneuraminate lyase; directed evolution, sia | 91.37 | |
| 2rfg_A | 297 | Dihydrodipicolinate synthase; beta barrel, amino-a | 91.31 | |
| 3s5o_A | 307 | 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; | 91.21 | |
| 1jub_A | 311 | Dihydroorotate dehydrogenase A; homodimer, alpha-b | 91.2 | |
| 1eep_A | 404 | Inosine 5'-monophosphate dehydrogenase; alpha-beta | 91.19 | |
| 1vli_A | 385 | Spore coat polysaccharide biosynthesis protein SP; | 91.13 | |
| 3ffs_A | 400 | Inosine-5-monophosphate dehydrogenase; beta-alpha | 91.13 | |
| 2rfg_A | 297 | Dihydrodipicolinate synthase; beta barrel, amino-a | 91.06 | |
| 3q94_A | 288 | Fructose-bisphosphate aldolase, class II; structur | 91.04 | |
| 2wkj_A | 303 | N-acetylneuraminate lyase; directed evolution, sia | 91.01 | |
| 1zco_A | 262 | 2-dehydro-3-deoxyphosphoheptonate aldolase; arabin | 90.99 | |
| 3vav_A | 275 | 3-methyl-2-oxobutanoate hydroxymethyltransferase; | 90.95 | |
| 3tak_A | 291 | DHDPS, dihydrodipicolinate synthase; TIM barrel, l | 90.93 | |
| 3n9r_A | 307 | Fructose-bisphosphate aldolase; FBP aldolase, clas | 90.88 | |
| 3eb2_A | 300 | Putative dihydrodipicolinate synthetase; lysine bi | 90.87 | |
| 3daq_A | 292 | DHDPS, dihydrodipicolinate synthase; lysine biosyn | 90.85 | |
| 1ydn_A | 295 | Hydroxymethylglutaryl-COA lyase; TIM-barrel protei | 90.81 | |
| 1twd_A | 256 | Copper homeostasis protein CUTC; TIM-like protein, | 90.8 | |
| 1gvf_A | 286 | Tagatose-bisphosphate aldolase AGAY; lyase, zinc.; | 90.74 | |
| 3ijl_A | 338 | Muconate cycloisomerase; enolase superfamily, dipe | 90.7 | |
| 3gk0_A | 278 | PNP synthase, pyridoxine 5'-phosphate synthase; de | 90.68 | |
| 3m5v_A | 301 | DHDPS, dihydrodipicolinate synthase; TIM barrel, c | 90.64 | |
| 3qfe_A | 318 | Putative dihydrodipicolinate synthase family PROT; | 90.6 | |
| 3daq_A | 292 | DHDPS, dihydrodipicolinate synthase; lysine biosyn | 90.52 | |
| 3d0c_A | 314 | Dihydrodipicolinate synthase; lysine biosynthesis, | 90.5 | |
| 3a5f_A | 291 | Dihydrodipicolinate synthase; TIM barrel, enzyme, | 90.35 | |
| 1f6k_A | 293 | N-acetylneuraminate lyase; beta barrel; 1.60A {Hae | 90.27 | |
| 2isw_A | 323 | Putative fructose-1,6-bisphosphate aldolase; class | 90.24 | |
| 3fkr_A | 309 | L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL f | 89.95 | |
| 3tqp_A | 428 | Enolase; energy metabolism, lyase; 2.20A {Coxiella | 89.92 | |
| 3dz1_A | 313 | Dihydrodipicolinate synthase; lysine biosynthesis, | 89.76 | |
| 4adt_A | 297 | Pyridoxine biosynthetic enzyme PDX1 homologue, PU; | 89.5 | |
| 2r91_A | 286 | 2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM | 88.95 | |
| 3nvt_A | 385 | 3-deoxy-D-arabino-heptulosonate 7-phosphate synth; | 88.9 | |
| 2nuw_A | 288 | 2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho a | 88.88 | |
| 3s5o_A | 307 | 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; | 88.87 | |
| 1w3i_A | 293 | EDA, 2-keto-3-deoxy gluconate aldolase; archaeal m | 88.84 | |
| 3eb2_A | 300 | Putative dihydrodipicolinate synthetase; lysine bi | 88.8 | |
| 2o7s_A | 523 | DHQ-SDH PR, bifunctional 3-dehydroquinate dehydrat | 88.59 | |
| 1vs1_A | 276 | 3-deoxy-7-phosphoheptulonate synthase; (beta/alpha | 88.58 | |
| 1p0k_A | 349 | Isopentenyl-diphosphate delta-isomerase; terpene b | 88.55 | |
| 3fkr_A | 309 | L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL f | 88.44 | |
| 3fa4_A | 302 | 2,3-dimethylmalate lyase; alpha/beta barrel, helix | 88.38 | |
| 3p6l_A | 262 | Sugar phosphate isomerase/epimerase; TIM barrel, s | 88.35 | |
| 1vhc_A | 224 | Putative KHG/KDPG aldolase; structural genomics, u | 88.18 | |
| 2opj_A | 327 | O-succinylbenzoate-COA synthase; TIM barrel, struc | 88.17 | |
| 1vr6_A | 350 | Phospho-2-dehydro-3-deoxyheptonate aldolase; TM034 | 88.04 | |
| 3lye_A | 307 | Oxaloacetate acetyl hydrolase; (alpha/beta)8 barre | 87.98 | |
| 1nsj_A | 205 | PRAI, phosphoribosyl anthranilate isomerase; therm | 87.92 | |
| 2p3z_A | 415 | L-rhamnonate dehydratase; enolase, structural geno | 87.91 | |
| 4g8t_A | 464 | Glucarate dehydratase; enolase, enzyme function IN | 87.79 | |
| 1ydo_A | 307 | HMG-COA lyase; TIM-barrel protein, structural geno | 87.77 | |
| 1f6y_A | 262 | 5-methyltetrahydrofolate corrinoid/iron sulfur PR | 87.76 | |
| 3h5d_A | 311 | DHDPS, dihydrodipicolinate synthase; lysine biosyn | 87.68 | |
| 1vs1_A | 276 | 3-deoxy-7-phosphoheptulonate synthase; (beta/alpha | 87.66 | |
| 3hgj_A | 349 | Chromate reductase; TIM barrel, oxidoreductase; HE | 87.56 | |
| 2bdq_A | 224 | Copper homeostasis protein CUTC; alpha beta protei | 87.49 | |
| 3dz1_A | 313 | Dihydrodipicolinate synthase; lysine biosynthesis, | 87.41 | |
| 1f76_A | 336 | Dihydroorotate dehydrogenase; monomer, alpha-beta- | 87.32 | |
| 1mxs_A | 225 | KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate a | 87.27 | |
| 3qfe_A | 318 | Putative dihydrodipicolinate synthase family PROT; | 87.16 | |
| 1vr6_A | 350 | Phospho-2-dehydro-3-deoxyheptonate aldolase; TM034 | 87.09 | |
| 3ekg_A | 404 | Mandelate racemase/muconate lactonizing enzyme; st | 87.03 | |
| 3nav_A | 271 | Tryptophan synthase alpha chain; alpha subunit, st | 87.03 | |
| 2ekc_A | 262 | AQ_1548, tryptophan synthase alpha chain; structur | 86.99 | |
| 4hb7_A | 270 | Dihydropteroate synthase; transferase; 1.95A {Stap | 86.9 | |
| 1qop_A | 268 | Tryptophan synthase alpha chain; lyase, carbon-oxy | 86.68 | |
| 3cpr_A | 304 | Dihydrodipicolinate synthetase; (beta/alpha)8-barr | 86.64 | |
| 1o60_A | 292 | 2-dehydro-3-deoxyphosphooctonate aldolase; structu | 86.58 | |
| 1zco_A | 262 | 2-dehydro-3-deoxyphosphoheptonate aldolase; arabin | 86.47 | |
| 1geq_A | 248 | Tryptophan synthase alpha-subunit; hyperthermophIl | 86.42 | |
| 3e96_A | 316 | Dihydrodipicolinate synthase; structural genomics, | 86.3 | |
| 3l21_A | 304 | DHDPS, dihydrodipicolinate synthase; DAPA, dimer, | 86.28 | |
| 3l9c_A | 259 | 3-dehydroquinate dehydratase; AROD, amino-acid bio | 86.19 | |
| 2cw6_A | 298 | Hydroxymethylglutaryl-COA lyase, mitochondrial; HM | 86.12 | |
| 3lmz_A | 257 | Putative sugar isomerase; structural genomics, joi | 86.08 | |
| 1wbh_A | 214 | KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} | 86.07 | |
| 2egz_A | 219 | 3-dehydroquinate dehydratase; aquifex aeolicus VF5 | 85.67 | |
| 3g8r_A | 350 | Probable spore coat polysaccharide biosynthesis P; | 85.66 | |
| 3oix_A | 345 | Putative dihydroorotate dehydrogenase; dihydrooro | 85.61 | |
| 3uj2_A | 449 | Enolase 1; enzyme function initiative, EFI, lyase; | 85.56 | |
| 3sgz_A | 352 | Hydroxyacid oxidase 2; flavoprotein, homology, INH | 85.48 | |
| 2dqw_A | 294 | Dihydropteroate synthase; dimer, structural genomi | 85.44 | |
| 3d0c_A | 314 | Dihydrodipicolinate synthase; lysine biosynthesis, | 85.42 | |
| 2yxg_A | 289 | DHDPS, dihydrodipicolinate synthase; MJ0244, TIM b | 85.41 | |
| 2e6f_A | 314 | Dihydroorotate dehydrogenase; chagas disease, pyri | 85.35 | |
| 2vef_A | 314 | Dihydropteroate synthase; antibiotic resistance, t | 85.17 | |
| 3b4u_A | 294 | Dihydrodipicolinate synthase; structural genomics, | 84.99 | |
| 2ehh_A | 294 | DHDPS, dihydrodipicolinate synthase; structural ge | 84.99 | |
| 3qn3_A | 417 | Enolase; structural genomics, center for structura | 84.86 | |
| 2wqp_A | 349 | Polysialic acid capsule biosynthesis protein SIAC; | 84.75 | |
| 1f8m_A | 429 | Isocitrate lyase, ICL; alpha-beta barrel, helix-sw | 84.67 | |
| 2nli_A | 368 | Lactate oxidase; flavoenzyme, FMN, D-lactate, oxid | 84.65 | |
| 1kbi_A | 511 | Cytochrome B2, L-LCR; flavocytochrome B2, electron | 84.6 | |
| 1ep3_A | 311 | Dihydroorotate dehydrogenase B (PYRD subunit); het | 84.37 | |
| 2zbt_A | 297 | Pyridoxal biosynthesis lyase PDXS; pyridoxine bios | 84.36 | |
| 1o5k_A | 306 | DHDPS, dihydrodipicolinate synthase; TM1521, struc | 84.16 |
| >3b0p_A TRNA-dihydrouridine synthase; TIM barrel, oxidoreductase; HET: FMN; 1.70A {Thermus thermophilus} PDB: 3b0u_X* 3b0v_C* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-47 Score=364.30 Aligned_cols=244 Identities=42% Similarity=0.747 Sum_probs=208.6
Q ss_pred ecCCcEEEccCCCCChHHHHHHHHHcCCCcEEEecceeeccccccccchhhhhhcCCCCCcEEEEecCCCHHHHHHHHHH
Q 020423 66 YLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSNLDNLAKATEL 145 (326)
Q Consensus 66 ~l~nrivlAPM~~~s~~~~r~~~~~~Gg~gli~te~~~~~~~~~~~~~~~~~~~~~~~~~piivQL~g~~~~~f~~aA~~ 145 (326)
+|+||+++|||+++|+.++|+++++.||+|+++|||++++.+.+++. +.+.++++++.|+++||+|+++++|+++|++
T Consensus 1 ~l~nriv~APM~g~td~~~r~~~r~~Gg~gli~te~~~~~~~~~~~~--~~~~~~~~~~~p~~vQL~g~~p~~~~~aA~~ 78 (350)
T 3b0p_A 1 MLDPRLSVAPMVDRTDRHFRFLVRQVSLGVRLYTEMTVDQAVLRGNR--ERLLAFRPEEHPIALQLAGSDPKSLAEAARI 78 (350)
T ss_dssp -CCCSEEECCCTTTSSHHHHHHHHHHCSSSBEECCCEEHHHHHHSCH--HHHHCCCGGGCSEEEEEECSCHHHHHHHHHH
T ss_pred CCCCCEEECCCCCCCHHHHHHHHHHcCCCCEEEeCCEEechhhcCCH--HHHhccCCCCCeEEEEeCCCCHHHHHHHHHH
Confidence 48999999999999999999999999999999999999988766553 3566678899999999999999999999999
Q ss_pred HHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHHHHhhhC
Q 020423 146 ANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLS 225 (326)
Q Consensus 146 a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~ 225 (326)
+.++|||+||||+|||.++ .++|+||++++++++++.++++++++.+++||++|+|+|+++..+.++..+ +++.++++
T Consensus 79 a~~~G~D~IeIn~gcP~~~-~~~d~~G~~l~~~~~~~~eiv~av~~~v~~PV~vKiR~g~~~~~~~~~~~~-~a~~l~~a 156 (350)
T 3b0p_A 79 GEAFGYDEINLNLGCPSEK-AQEGGYGACLLLDLARVREILKAMGEAVRVPVTVKMRLGLEGKETYRGLAQ-SVEAMAEA 156 (350)
T ss_dssp HHHTTCSEEEEEECCCSHH-HHHTTCGGGGGGCHHHHHHHHHHHHHHCSSCEEEEEESCBTTCCCHHHHHH-HHHHHHHT
T ss_pred HHHcCCCEEEECCcCCCCc-CcCCCcchhHHhCHHHHHHHHHHHHHHhCCceEEEEecCcCccccHHHHHH-HHHHHHHc
Confidence 9999999999999999964 677999999999999999999999999999999999999887666655555 45677889
Q ss_pred CccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhCCch
Q 020423 226 PTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 305 (326)
Q Consensus 226 Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~dP~l 305 (326)
|+|+|+||+++.+. |+++......++.+|++++++++..+++|||++|||.|++++.++++ |||+||+||+++.|||
T Consensus 157 G~d~I~V~~r~~~~-g~~g~~~~~~~~~~~~~i~~ik~~~~~iPVianGgI~s~eda~~~l~-GaD~V~iGRa~l~~P~- 233 (350)
T 3b0p_A 157 GVKVFVVHARSALL-ALSTKANREIPPLRHDWVHRLKGDFPQLTFVTNGGIRSLEEALFHLK-RVDGVMLGRAVYEDPF- 233 (350)
T ss_dssp TCCEEEEECSCBC-----------CCCCCHHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHT-TSSEEEECHHHHHCGG-
T ss_pred CCCEEEEecCchhc-ccCcccccCCCcccHHHHHHHHHhCCCCeEEEECCcCCHHHHHHHHh-CCCEEEECHHHHhCcH-
Confidence 99999999987642 33332222345567999998887765899999999999999999998 9999999999999999
Q ss_pred hHHhHHHhhhC
Q 020423 306 TLGHVDTAIYG 316 (326)
Q Consensus 306 ~~~~i~~~~~~ 316 (326)
+++++.+.+++
T Consensus 234 l~~~i~~~l~~ 244 (350)
T 3b0p_A 234 VLEEADRRVFG 244 (350)
T ss_dssp GGTTHHHHTTC
T ss_pred HHHHHHHHhcC
Confidence 57777777777
|
| >3gr7_A NADPH dehydrogenase; flavin, FMN, beta-alpha-barrel, oxidoreductase, flavoprotein; HET: FMN; 2.30A {Geobacillus kaustophilus} PDB: 3gr8_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-45 Score=346.73 Aligned_cols=255 Identities=15% Similarity=0.150 Sum_probs=202.4
Q ss_pred ccCCccccccCeecCCcEEEccCCC---------CChHHHHHH-HHHcCCCcEEEecceeeccc---------cccccch
Q 020423 54 ILHTKAEMVARQYLPPWFSVAPMMD---------WTDNHYRTL-ARLISKHAWLYTEMLAAETI---------IYQQGNL 114 (326)
Q Consensus 54 ~~l~~p~~ig~~~l~nrivlAPM~~---------~s~~~~r~~-~~~~Gg~gli~te~~~~~~~---------~~~~~~~ 114 (326)
..||+|++||+++|||||+||||++ .|+.++.|| .|+.||+|||+||.+.+++. +++++++
T Consensus 3 ~~Lf~p~~ig~~~l~NRiv~apm~~~~~~~~~g~~~~~~~~~y~~rA~gG~Glii~e~~~v~~~g~~~~~~~~i~~d~~i 82 (340)
T 3gr7_A 3 TMLFSPYTIRGLTLKNRIVMSPMCMYSCDTKDGAVRTWHKIHYPARAVGQVGLIIVEATGVTPQGRISERDLGIWSDDHI 82 (340)
T ss_dssp CSTTSCEEETTEEESSSEEECCCCCCCCTTSSSCCCHHHHHHHHHHHHTTCSEEEEEEEESSGGGCSSTTSEECSSTTHH
T ss_pred hhcCCCEeECCEEEcCceEECCcCCCcccCCCCCCCHHHHHHHHHHhcCCceEEEEcceEecccccCCCCCcccCCHHHH
Confidence 5799999999999999999999974 367788888 45679999999999887753 2344455
Q ss_pred hhhhh----cCCCCCcEEEEecCCC-----------------------------------HHHHHHHHHHHHHCCCCEEE
Q 020423 115 DRFLA----FSPEQHPIVLQIGGSN-----------------------------------LDNLAKATELANAYNYDEIN 155 (326)
Q Consensus 115 ~~~~~----~~~~~~piivQL~g~~-----------------------------------~~~f~~aA~~a~~aG~d~Ie 155 (326)
+.|.+ +|+.+.++++||+|.. .++|+++|++++++|||+||
T Consensus 83 ~~~~~~~~~vh~~G~~i~~QL~H~Gr~~~~~~~~~~pS~~~~~~~~~~p~~mt~~eI~~ii~~f~~aA~~a~~aGfDgVE 162 (340)
T 3gr7_A 83 AGLRELVGLVKEHGAAIGIQLAHAGRKSQVPGEIIAPSAVPFDDSSPTPKEMTKADIEETVQAFQNGARRAKEAGFDVIE 162 (340)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEECCGGGCCSSSCCEESSSCCSSTTSCCCEECCHHHHHHHHHHHHHHHHHHHHHTCSEEE
T ss_pred HHHHHHHHHHHhCCCeEEEEeccCCCccCCCCCccCCCCccccCCCCCCccCCHHHHHHHHHHHHHHHHHHHHcCCCEEE
Confidence 55443 7899999999997521 37899999999999999999
Q ss_pred ecCCC---------CCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCC--CCccHHHHHHHHHHHhhh
Q 020423 156 LNCGC---------PSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVD--DHDSYNQLCDFIYKVSSL 224 (326)
Q Consensus 156 in~g~---------P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~--~~~~~~e~~~~ia~~le~ 224 (326)
||++| |.. |+|+|+|||+++||++|+.|++++||+++++||.||++.... ...+.++..+ +++.+++
T Consensus 163 ih~a~GyLl~qFlsp~~-N~R~D~yGGslenR~r~~~eiv~avr~~v~~pv~vRls~~~~~~~g~~~~~~~~-la~~L~~ 240 (340)
T 3gr7_A 163 IHAAHGYLINEFLSPLS-NRRQDEYGGSPENRYRFLGEVIDAVREVWDGPLFVRISASDYHPDGLTAKDYVP-YAKRMKE 240 (340)
T ss_dssp EEECTTCHHHHHHCTTT-CCCCSTTSSSHHHHHHHHHHHHHHHHHHCCSCEEEEEESCCCSTTSCCGGGHHH-HHHHHHH
T ss_pred EccccchHHHHcCCCcc-CcCCCcccCCHHHHHHHHHHHHHHHHHhcCCceEEEeccccccCCCCCHHHHHH-HHHHHHH
Confidence 99984 875 689999999999999999999999999999999999998521 1123344444 5667789
Q ss_pred CCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhC-CChhhhhHHHHhCC
Q 020423 225 SPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKG-AHHVMVGRAAYQNP 303 (326)
Q Consensus 225 ~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~G-aD~V~iGRall~dP 303 (326)
+|+|+|+||.+...... ....+...+++++++++.. ++|||++|||+++++++++++.| ||+|++||++++||
T Consensus 241 ~Gvd~i~vs~g~~~~~~-----~~~~~~~~~~~~~~ik~~~-~iPVi~~GgI~s~e~a~~~L~~G~aD~V~iGR~~lanP 314 (340)
T 3gr7_A 241 QGVDLVDVSSGAIVPAR-----MNVYPGYQVPFAELIRREA-DIPTGAVGLITSGWQAEEILQNGRADLVFLGRELLRNP 314 (340)
T ss_dssp TTCCEEEEECCCSSCCC-----CCCCTTTTHHHHHHHHHHT-TCCEEEESSCCCHHHHHHHHHTTSCSEEEECHHHHHCT
T ss_pred cCCCEEEEecCCccCCC-----CCCCccccHHHHHHHHHHc-CCcEEeeCCCCCHHHHHHHHHCCCeeEEEecHHHHhCc
Confidence 99999999964321100 0011223467777777765 99999999999999999999988 99999999999999
Q ss_pred chhHHhHHHhhhCC
Q 020423 304 WYTLGHVDTAIYGA 317 (326)
Q Consensus 304 ~l~~~~i~~~~~~~ 317 (326)
+ |.+++.+.+-..
T Consensus 315 d-l~~ki~~~l~~~ 327 (340)
T 3gr7_A 315 Y-WPYAAARELGAK 327 (340)
T ss_dssp T-HHHHHHHHTTCC
T ss_pred h-HHHHHHHHCCCC
Confidence 9 566666665433
|
| >1z41_A YQJM, probable NADH-dependent flavin oxidoreductase YQJ; FMN, beta-alpha-barrel; HET: FMN; 1.30A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1z42_A* 1z44_A* 1z48_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-45 Score=343.92 Aligned_cols=258 Identities=14% Similarity=0.151 Sum_probs=204.0
Q ss_pred cccCCccccccCeecCCcEEEccCCCC---------ChHHHHHH-HHHcCCCcEEEecceeecccc---------ccccc
Q 020423 53 IILHTKAEMVARQYLPPWFSVAPMMDW---------TDNHYRTL-ARLISKHAWLYTEMLAAETII---------YQQGN 113 (326)
Q Consensus 53 ~~~l~~p~~ig~~~l~nrivlAPM~~~---------s~~~~r~~-~~~~Gg~gli~te~~~~~~~~---------~~~~~ 113 (326)
+..||+|++||+++||||++||||++. |+.++++| .++.||+||++||++.+++.. +++++
T Consensus 2 ~~~Lf~p~~ig~~~l~NRiv~aPm~~~~~~~~~g~~~~~~~~~y~~rA~gG~gliite~~~v~~~g~~~~~~~~i~~d~~ 81 (338)
T 1z41_A 2 ARKLFTPITIKDMTLKNRIVMSPMCMYSSHEKDGKLTPFHMAHYISRAIGQVGLIIVEASAVNPQGRITDQDLGIWSDEH 81 (338)
T ss_dssp CCGGGSCEEETTEEESSSEEECCCCCCCCTTSSSCCCHHHHHHHHHHHHTTCSEEEEEEEESSGGGCSSTTSCBCSSTHH
T ss_pred ccccCCCeeECCEEEcCccEECCcCCCcCCCCCCCCCHHHHHHHHHHHcCCCCEEEeCCeeccccccCCCCCcccCCHHH
Confidence 457999999999999999999999864 56677877 445688999999999876432 23334
Q ss_pred hhhhhh----cCCCCCcEEEEecCC-----------------------C------------HHHHHHHHHHHHHCCCCEE
Q 020423 114 LDRFLA----FSPEQHPIVLQIGGS-----------------------N------------LDNLAKATELANAYNYDEI 154 (326)
Q Consensus 114 ~~~~~~----~~~~~~piivQL~g~-----------------------~------------~~~f~~aA~~a~~aG~d~I 154 (326)
++.+.+ +|+++.++++||+|. . +++|+++|++++++|||+|
T Consensus 82 ~~~~~~~~~~vh~~g~~i~~QL~h~Gr~~~~~~~~~~pS~~~~~~~~~~p~~mt~~eI~~~i~~~~~aA~~a~~aGfDgV 161 (338)
T 1z41_A 82 IEGFAKLTEQVKEQGSKIGIQLAHAGRKAELEGDIFAPSAIAFDEQSATPVEMSAEKVKETVQEFKQAAARAKEAGFDVI 161 (338)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEECCGGGCCCSSCCEESSSCCSSTTSCCCEECCHHHHHHHHHHHHHHHHHHHHTTCSEE
T ss_pred HHHHHHHHHHHHhcCCEEEEEecCCCcccCCCCCCcCCCCCCCCCCCCCCccCCHHHHHHHHHHHHHHHHHHHHcCCCEE
Confidence 333332 688999999999873 2 3789999999999999999
Q ss_pred EecCCC---------CCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCC--CCccHHHHHHHHHHHhh
Q 020423 155 NLNCGC---------PSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVD--DHDSYNQLCDFIYKVSS 223 (326)
Q Consensus 155 ein~g~---------P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~--~~~~~~e~~~~ia~~le 223 (326)
|||++| |.. |.|+|+|||+++||++++.|++++||+++++||.||++.... ...+.++..+ +++.++
T Consensus 162 eih~~~gyLl~qFlsp~~-n~R~d~yGGslenr~r~~~eiv~avr~~v~~pv~vris~~~~~~~g~~~~~~~~-~a~~l~ 239 (338)
T 1z41_A 162 EIHAAHGYLIHEFLSPLS-NHRTDEYGGSPENRYRFLREIIDEVKQVWDGPLFVRVSASDYTDKGLDIADHIG-FAKWMK 239 (338)
T ss_dssp EEEECTTSHHHHHHCTTT-CCCCSTTSSSHHHHHHHHHHHHHHHHHHCCSCEEEEEECCCCSTTSCCHHHHHH-HHHHHH
T ss_pred EeccccchHHHHccCCCc-CCcCcccCcchhhhHHHHHHHHHHHHHHcCCcEEEEecCcccCCCCCCHHHHHH-HHHHHH
Confidence 999986 775 689999999999999999999999999999999999998421 1223555555 566778
Q ss_pred hCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhC-CChhhhhHHHHhC
Q 020423 224 LSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKG-AHHVMVGRAAYQN 302 (326)
Q Consensus 224 ~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~G-aD~V~iGRall~d 302 (326)
+.|+|+|++++++...... +..+...++.++++++.. ++|||++|||.|+++++++++.| ||+|++||+++.|
T Consensus 240 ~~Gvd~i~v~~~~~~~~~~-----~~~~~~~~~~~~~ir~~~-~iPVi~~Ggi~s~~~a~~~l~~G~aD~V~iGR~~i~n 313 (338)
T 1z41_A 240 EQGVDLIDCSSGALVHADI-----NVFPGYQVSFAEKIREQA-DMATGAVGMITDGSMAEEILQNGRADLIFIGRELLRD 313 (338)
T ss_dssp HTTCCEEEEECCCSSCCCC-----CCCTTTTHHHHHHHHHHH-CCEEEECSSCCSHHHHHHHHHTTSCSEEEECHHHHHC
T ss_pred HcCCCEEEEecCccccCCC-----CCCccchHHHHHHHHHHC-CCCEEEECCCCCHHHHHHHHHcCCceEEeecHHHHhC
Confidence 9999999999875321100 011123467777777765 99999999999999999999987 9999999999999
Q ss_pred CchhHHhHHHhhhCCCC
Q 020423 303 PWYTLGHVDTAIYGAPS 319 (326)
Q Consensus 303 P~l~~~~i~~~~~~~~~ 319 (326)
|+ |.+++.+.+-....
T Consensus 314 Pd-l~~ki~~~~~~~i~ 329 (338)
T 1z41_A 314 PF-FARTAAKQLNTEIP 329 (338)
T ss_dssp TT-HHHHHHHHTTCCCC
T ss_pred ch-HHHHHHcCCCcccC
Confidence 99 56777766654433
|
| >3l5a_A NADH/flavin oxidoreductase/NADH oxidase; OLD yellow enzyme family, OYE-like FMN-binding domain, TIM B oxidoreductase; HET: PGE; 1.65A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-45 Score=351.30 Aligned_cols=266 Identities=11% Similarity=0.070 Sum_probs=205.5
Q ss_pred ccccCCccccc-cCeecCCcEEEccCCC--------CChHHHHHHHHHcCCCcEEEecceeeccc---------cccccc
Q 020423 52 NIILHTKAEMV-ARQYLPPWFSVAPMMD--------WTDNHYRTLARLISKHAWLYTEMLAAETI---------IYQQGN 113 (326)
Q Consensus 52 ~~~~l~~p~~i-g~~~l~nrivlAPM~~--------~s~~~~r~~~~~~Gg~gli~te~~~~~~~---------~~~~~~ 113 (326)
.+..||+|++| |+++|||||+||||++ .|+.++.||.++++|+|||+||.+.+++. ++++++
T Consensus 23 ~~~~Lf~P~~i~g~~~lkNRiv~aPm~~~~a~~dg~~t~~~~~yy~~rA~G~GLiIte~~~V~~~g~~~~~~~gi~~d~~ 102 (419)
T 3l5a_A 23 RYKPLLQSIHLPNGIKISNRFVLSPMTVNASTKEGYITKADLAYAARRSNSAGMQVTGAAYIEPYGKLFEYGFNIDHDAC 102 (419)
T ss_dssp TTGGGGSCEECTTSCEESSSEEECCCCCCCSCTTCCCCHHHHHHHHHTTTSCSEEEEEEEESSGGGCCSTTCEECSSGGG
T ss_pred chhhcCCCEEeCCCCEECCCeEeCCCCCCccCCCCCCCHHHHHHHHHHhcCCcEEEecceEeCcccccCCCccccccHHH
Confidence 46789999999 9999999999999974 47888999977777899999999988753 234445
Q ss_pred hhhhhh----cCCCCCcEEEEecCCC----------------------------------------HHHHHHHHHHHHHC
Q 020423 114 LDRFLA----FSPEQHPIVLQIGGSN----------------------------------------LDNLAKATELANAY 149 (326)
Q Consensus 114 ~~~~~~----~~~~~~piivQL~g~~----------------------------------------~~~f~~aA~~a~~a 149 (326)
+..|.+ +|+.+.++++||++.. .++|++||++|+++
T Consensus 103 i~~~k~l~~avh~~G~~i~~QL~H~Gr~~~~~~~~~~~~vapS~i~~~~~~~~~pr~mt~~eI~~ii~~F~~AA~rA~~A 182 (419)
T 3l5a_A 103 IPGLTNMASTMKQHGSLAIIQLAHAGRFSNQAILNFGKVYGPSPMTLHSPIEHVVIAMSHEKINSIIQQYRDATLRAIKA 182 (419)
T ss_dssp HHHHHHHHHHHHTTSCEEEEEEECCGGGCHHHHHHHSEEEESSCEEECSSSSEEEEECCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCCEEEEEeccCCCcccccccCCCceeCCCCCccccCCCCCCccCCHHHHHHHHHHHHHHHHHHHHc
Confidence 555543 7999999999997521 26899999999999
Q ss_pred CCCEEEecCCC---------CCCcccCCCCccccc-cCCHHHHHHHHHHHHhcC------CCcEEEEeccCCC-C---Cc
Q 020423 150 NYDEINLNCGC---------PSPKVAGHGCFGVSL-MLDPKFVGEAMSVIAANT------NVPVSVKCRIGVD-D---HD 209 (326)
Q Consensus 150 G~d~Iein~g~---------P~~~~~r~d~yGgsl-~~r~~~l~eiv~avr~~~------~~pv~vK~r~g~~-~---~~ 209 (326)
|||+||||++| |.. |+|+|+|||++ +||++|+.||+++||+++ ++||.+|++.... + ..
T Consensus 183 GfDgVEIH~ahGYLl~QFlSp~~-N~RtD~yGGs~lenR~Rf~~evv~aVr~~v~~~~~~~f~v~vRis~~~~~~~~~G~ 261 (419)
T 3l5a_A 183 GFDGVEISIAQRLLIQTFFSTFS-NRRTDHYGADSLKNRARLCLEVMRAVQEVIDKEAPDNFILGFRATPEETRGSDLGY 261 (419)
T ss_dssp TCSEEEEECCTTSHHHHHHCTTT-CCCCSTTSTTCHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEEECSCEEETTEEEE
T ss_pred CCCEEEECCccchHHHHccCCcc-cccccCCCCchhhhhhHHHHHHHHHHHHHHhhhcCCCeeEEEecccccccCCCCCC
Confidence 99999999997 875 69999999999 999999999999999987 6789999987311 1 12
Q ss_pred cHHHHHHHHHHHhhh-CCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCC-CceEEEeCCCCCHHHHHHHHH
Q 020423 210 SYNQLCDFIYKVSSL-SPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFP-DLTFTLNGGINTVDEVNAALR 287 (326)
Q Consensus 210 ~~~e~~~~ia~~le~-~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~-~iPVIa~GgI~s~~da~~~l~ 287 (326)
+.++..+ +++.+++ +|+|+|+||+++......... ..-+...+..+..+++.+. ++|||++|||.|+++++++++
T Consensus 262 ~~ed~~~-la~~L~~~~Gvd~I~vs~g~~~~~~~~~~--~~g~~~~~~~a~~Ik~~v~~~iPVI~~GgI~t~e~Ae~~L~ 338 (419)
T 3l5a_A 262 TIDEFNQ-LIDWVMDVSNIQYLAIASWGRHIYQNTSR--TPGDHFGRPVNQIVYEHLAGRIPLIASGGINSPESALDALQ 338 (419)
T ss_dssp CHHHHHH-HHHHHHHHSCCCCEEECCTTCCGGGCBCC--CSSTTTTSBHHHHHHHHHTTSSCEEECSSCCSHHHHHHHGG
T ss_pred CHHHHHH-HHHHHHhhcCCcEEEEeeCCccccccccC--CCCccccHHHHHHHHHHcCCCCeEEEECCCCCHHHHHHHHH
Confidence 4566665 5667788 999999999875310000000 0001112344555555433 699999999999999999999
Q ss_pred hCCChhhhhHHHHhCCchhHHhHHHhhhCCCCCCCC
Q 020423 288 KGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLT 323 (326)
Q Consensus 288 ~GaD~V~iGRall~dP~l~~~~i~~~~~~~~~~~~~ 323 (326)
. ||+|++||++|+||+ |++++.+.......+|++
T Consensus 339 ~-aDlVaiGR~~IanPd-lv~ki~~G~~~~I~~ci~ 372 (419)
T 3l5a_A 339 H-ADMVGMSSPFVTEPD-FVHKLAEQRPHDINLEFS 372 (419)
T ss_dssp G-CSEEEESTHHHHCTT-HHHHHHTTCGGGCCCCCC
T ss_pred h-CCcHHHHHHHHHCcH-HHHHHHcCCcccceecCC
Confidence 9 999999999999999 577777765555666643
|
| >3hgj_A Chromate reductase; TIM barrel, oxidoreductase; HET: FMN; 2.00A {Thermus scotoductus} SCOP: c.1.4.0 PDB: 3hf3_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-44 Score=338.27 Aligned_cols=258 Identities=17% Similarity=0.179 Sum_probs=202.6
Q ss_pred cccCCccccccCeecCCcEEEccCCC--------CChHHHHHH-HHHcCCCcEEEecceeeccc---------cccccch
Q 020423 53 IILHTKAEMVARQYLPPWFSVAPMMD--------WTDNHYRTL-ARLISKHAWLYTEMLAAETI---------IYQQGNL 114 (326)
Q Consensus 53 ~~~l~~p~~ig~~~l~nrivlAPM~~--------~s~~~~r~~-~~~~Gg~gli~te~~~~~~~---------~~~~~~~ 114 (326)
|..||+|++||+++|||||+||||++ .|+.++.|| .|+.||+|||+||.+.+++. +++++++
T Consensus 1 m~~Lf~p~~ig~~~l~NRiv~apm~~~~~~~~g~~~~~~~~~y~~rA~gg~Glii~e~~~v~~~g~~~~~~~~i~~d~~i 80 (349)
T 3hgj_A 1 MALLFTPLELGGLRLKNRLAMSPMCQYSATLEGEVTDWHLLHYPTRALGGVGLILVEATAVEPLGRISPYDLGIWSEDHL 80 (349)
T ss_dssp -CGGGSCEEETTEEESSSEEECCCCCCCSCTTCCCCHHHHHHHHHHHHTTCSEEEEEEEESSGGGCSSTTSCBCSSGGGH
T ss_pred CCcCCCCeeECCEEecCceEECCcCcCCcCCCCCCCHHHHHHHHHHhcCCceEEEecceeecccccCCCCcCccCcHHHH
Confidence 35799999999999999999999975 367888888 45679999999999888753 2344455
Q ss_pred hhhhh----cCCCCCcEEEEecCC----------------C-----------------------------HHHHHHHHHH
Q 020423 115 DRFLA----FSPEQHPIVLQIGGS----------------N-----------------------------LDNLAKATEL 145 (326)
Q Consensus 115 ~~~~~----~~~~~~piivQL~g~----------------~-----------------------------~~~f~~aA~~ 145 (326)
+.|.+ +|+.+.++++||+|. . .++|+++|++
T Consensus 81 ~~~~~~~~~vh~~G~~i~~Ql~H~Gr~~~~~~~~~~~~~~~~~~~~pS~~~~~~~~~~p~~mt~~eI~~ii~~f~~aA~~ 160 (349)
T 3hgj_A 81 PGLKELARRIREAGAVPGIQLAHAGRKAGTARPWEGGKPLGWRVVGPSPIPFDEGYPVPEPLDEAGMERILQAFVEGARR 160 (349)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEECCGGGCCBCCGGGTCCBCCCCCEESSSCCSSTTCCCCEECCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCeEEEEeccCCccccccccccccccCCCcccCCCcccccCCCCCCccCCHHHHHHHHHHHHHHHHH
Confidence 55543 788999999999741 0 3689999999
Q ss_pred HHHCCCCEEEecCCC---------CCCcccCCCCccccccCCHHHHHHHHHHHHhcC--CCcEEEEeccCC--CCCccHH
Q 020423 146 ANAYNYDEINLNCGC---------PSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGV--DDHDSYN 212 (326)
Q Consensus 146 a~~aG~d~Iein~g~---------P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~--~~pv~vK~r~g~--~~~~~~~ 212 (326)
++++|||+||||++| |.. |.|+|+|||+++||++|+.|++++||+++ ++||.+|++... +...+.+
T Consensus 161 a~~aGfDgVEih~a~GyLl~qFlsp~~-N~R~D~yGGslenR~r~~~eiv~aVR~avG~d~pV~vRls~~~~~~~g~~~~ 239 (349)
T 3hgj_A 161 ALRAGFQVIELHMAHGYLLSSFLSPLS-NQRTDAYGGSLENRMRFPLQVAQAVREVVPRELPLFVRVSATDWGEGGWSLE 239 (349)
T ss_dssp HHHTTCCEEEEEECTTSHHHHHHCTTT-CCCCSTTSSSHHHHHHHHHHHHHHHHHHSCTTSCEEEEEESCCCSTTSCCHH
T ss_pred HHHcCCCEEEECCccchHHHHhcCCcc-cccCCCCCcCHHHHHHHHHHHHHHHHHHhcCCceEEEEeccccccCCCCCHH
Confidence 999999999999998 885 68999999999999999999999999999 689999999842 1122455
Q ss_pred HHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhC-CC
Q 020423 213 QLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKG-AH 291 (326)
Q Consensus 213 e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~G-aD 291 (326)
+..+ +++.+++.|+|+|+++.+........ +..+...++.++++++.. ++|||++|||.++++++++++.| ||
T Consensus 240 ~~~~-la~~L~~~Gvd~i~vs~g~~~~~~~~----~~~~~~~~~~~~~ir~~~-~iPVi~~Ggi~t~e~a~~~l~~G~aD 313 (349)
T 3hgj_A 240 DTLA-FARRLKELGVDLLDCSSGGVVLRVRI----PLAPGFQVPFADAVRKRV-GLRTGAVGLITTPEQAETLLQAGSAD 313 (349)
T ss_dssp HHHH-HHHHHHHTTCCEEEEECCCSCSSSCC----CCCTTTTHHHHHHHHHHH-CCEEEECSSCCCHHHHHHHHHTTSCS
T ss_pred HHHH-HHHHHHHcCCCEEEEecCCcCccccc----CCCccccHHHHHHHHHHc-CceEEEECCCCCHHHHHHHHHCCCce
Confidence 6555 56677899999999995321100000 011223466777777664 89999999999999999999988 99
Q ss_pred hhhhhHHHHhCCchhHHhHHHhhhCCC
Q 020423 292 HVMVGRAAYQNPWYTLGHVDTAIYGAP 318 (326)
Q Consensus 292 ~V~iGRall~dP~l~~~~i~~~~~~~~ 318 (326)
+|++||++++||+ |.+++.+.+-...
T Consensus 314 ~V~iGR~~lanPd-l~~k~~~~l~~~~ 339 (349)
T 3hgj_A 314 LVLLGRVLLRDPY-FPLRAAKALGVAP 339 (349)
T ss_dssp EEEESTHHHHCTT-HHHHHHHHTTCCC
T ss_pred EEEecHHHHhCch-HHHHHHHHCCCCC
Confidence 9999999999999 5667766654333
|
| >3kru_A NADH:flavin oxidoreductase/NADH oxidase; homotetramer, dimer of dimers, TIM barrel, thermophilic, OLD enzyme; HET: FMN; 1.60A {Thermoanaerobacter pseudethanolicus AT} SCOP: c.1.4.0 PDB: 3krz_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-44 Score=338.57 Aligned_cols=248 Identities=15% Similarity=0.182 Sum_probs=196.6
Q ss_pred cccCCccccccCeecCCcEEEccCCC--------CChHHHHHH-HHHcCCCcEEEecceeecccc---------ccccch
Q 020423 53 IILHTKAEMVARQYLPPWFSVAPMMD--------WTDNHYRTL-ARLISKHAWLYTEMLAAETII---------YQQGNL 114 (326)
Q Consensus 53 ~~~l~~p~~ig~~~l~nrivlAPM~~--------~s~~~~r~~-~~~~Gg~gli~te~~~~~~~~---------~~~~~~ 114 (326)
|..||+|++||+++|||||+||||++ .|+.++.|| .|+.||+|||+||.+.+++.. ++++++
T Consensus 1 m~~Lf~P~~ig~~~l~NRiv~apm~~~~~~~~g~~t~~~~~yy~~rA~gG~Gliite~~~V~~~g~~~~~~~gi~~d~~i 80 (343)
T 3kru_A 1 MSILHMPLKIKDITIKNRIMMSPMCMYSASTDGMPNDWHIVHYATRAIGGVGLIMQEATAVESRGRITDHDLGIWNDEQV 80 (343)
T ss_dssp -CGGGSCEEETTEEESSSEEECCCCCCCSCTTCCCCHHHHHHHHHHHHTTCSEEEEEEEESSGGGCSSTTSCBCSSHHHH
T ss_pred CccccccceeeeeeeeeeecccchhheecccCCCCCceeeeeeehhhccceeeeeehhhhhhhcCccccccccccCHHHH
Confidence 35799999999999999999999975 467888888 456799999999998887532 333444
Q ss_pred hhhhh----cCCCCCcEEEEecCCC------------------------------------HHHHHHHHHHHHHCCCCEE
Q 020423 115 DRFLA----FSPEQHPIVLQIGGSN------------------------------------LDNLAKATELANAYNYDEI 154 (326)
Q Consensus 115 ~~~~~----~~~~~~piivQL~g~~------------------------------------~~~f~~aA~~a~~aG~d~I 154 (326)
+.|.+ +|+.+.++++||++.. .++|+++|++++++|||+|
T Consensus 81 ~~~~~~~~~vh~~G~~i~~QL~H~Gr~~~~~g~~~~apS~i~~~~~~~~p~~mt~~eI~~ii~~f~~AA~~a~~aGfDgV 160 (343)
T 3kru_A 81 KELKKIVDICKANGAVMGIQLAHAGRKCNISYEDVVGPSPIKAGDRYKLPRELSVEEIKSIVKAFGEAAKRANLAGYDVV 160 (343)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEECCGGGCCCTTSCCEESSSCCSSTTSCCCEECCHHHHHHHHHHHHHHHHHHHHHTCSEE
T ss_pred HHHHHHHHHHhcCCceEeeehhhccCccCcchhhccCCCcCCCCccccCchhcCHHHHHHHHHHHHHHHhhccccCCceE
Confidence 44433 7889999999997521 3789999999999999999
Q ss_pred Eec---------CCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC--CCcEEEEeccC-CCC-CccHHHHHHHHHHH
Q 020423 155 NLN---------CGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIG-VDD-HDSYNQLCDFIYKV 221 (326)
Q Consensus 155 ein---------~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~--~~pv~vK~r~g-~~~-~~~~~e~~~~ia~~ 221 (326)
||| |.||.. |.|+|+|||+++||++|+.|++++||+++ ++||.+|++.. +.+ ..+.++..+ +++.
T Consensus 161 Eih~ahGYLl~qFlsp~~-N~R~D~yGGslenR~rf~~eiv~aVr~avg~d~pv~vRls~~~~~~~g~~~~~~~~-~a~~ 238 (343)
T 3kru_A 161 EIHAAHGYLIHEFLSPLS-NKRKDEYGNSIENRARFLIEVIDEVRKNWPENKPIFVRVSADDYMEGGINIDMMVE-YINM 238 (343)
T ss_dssp EEEECTTSHHHHHHCTTT-CCCCSTTSSSHHHHTHHHHHHHHHHHHTSCTTSCEEEEEECCCSSTTSCCHHHHHH-HHHH
T ss_pred EEecccchhHHHhhcccc-cccchhhccchHhHHHHHHHHHHHHHhcCCccCCeEEEeechhhhccCccHHHHHH-HHHH
Confidence 999 569985 68999999999999999999999999999 68999999984 222 234666666 5677
Q ss_pred hhhCCccEEEEe-cCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhC-CChhhhhHHH
Q 020423 222 SSLSPTRHFIIH-SRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKG-AHHVMVGRAA 299 (326)
Q Consensus 222 le~~Gvd~I~v~-~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~G-aD~V~iGRal 299 (326)
++++ +|+|+++ ++... .. ....+...+++++++++.. ++|||++|||+++++++++++.| ||+|++||++
T Consensus 239 l~~~-vd~i~vs~g~~~~-~~-----~~~~~~~~~~~~~~ir~~~-~iPVi~~Ggi~t~e~Ae~~l~~G~aD~V~iGR~~ 310 (343)
T 3kru_A 239 IKDK-VDLIDVSSGGLLN-VD-----INLYPGYQVKYAETIKKRC-NIKTSAVGLITTQELAEEILSNERADLVALGREL 310 (343)
T ss_dssp HTTT-CSEEEEECCCSSC-CC-----CCCCTTTTHHHHHHHHHHH-TCEEEEESSCCCHHHHHHHHHTTSCSEEEESHHH
T ss_pred hhcc-ccEEeccCCceEe-ee-----ecccCceeehHHHHHHHhc-CcccceeeeeeHHHHHHHHHhchhhHHHHHHHHH
Confidence 7889 9999995 43321 00 0011223467777776664 89999999999999999999977 9999999999
Q ss_pred HhCCchhHHhHH
Q 020423 300 YQNPWYTLGHVD 311 (326)
Q Consensus 300 l~dP~l~~~~i~ 311 (326)
|+||+| ++++.
T Consensus 311 lanPdl-~~k~~ 321 (343)
T 3kru_A 311 LRNPYW-VLHTY 321 (343)
T ss_dssp HHCTTH-HHHTC
T ss_pred hcCCeE-EEEEe
Confidence 999995 55555
|
| >3l5l_A Xenobiotic reductase A; TIM barrel, oxidoreductase; HET: BU3 FMN; 1.03A {Pseudomonas putida} SCOP: c.1.4.0 PDB: 3l5m_A* 3n19_B* 3n16_A* 3l68_A* 3l67_A* 3l65_A* 3l66_A* 3n14_A* 2h8z_A* 2h90_A* 2h8x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-43 Score=336.73 Aligned_cols=254 Identities=15% Similarity=0.137 Sum_probs=199.7
Q ss_pred cccCCccccccCeecCCcEEEccCCC-------CChHHHHHH-HHHcCCCcEEEecceeecccc---------ccccchh
Q 020423 53 IILHTKAEMVARQYLPPWFSVAPMMD-------WTDNHYRTL-ARLISKHAWLYTEMLAAETII---------YQQGNLD 115 (326)
Q Consensus 53 ~~~l~~p~~ig~~~l~nrivlAPM~~-------~s~~~~r~~-~~~~Gg~gli~te~~~~~~~~---------~~~~~~~ 115 (326)
|..||+|++||+++|||||+||||++ .|+.++.|| .|+.||+|||+||.+.+++.. +++++++
T Consensus 1 m~~Lf~P~~ig~~~l~NRiv~apm~~~~~~~g~~~~~~~~~y~~rA~gG~Glii~e~~~v~~~g~~~~~~~~i~~d~~i~ 80 (363)
T 3l5l_A 1 MSALFEPYTLKDVTLRNRIAIPPMCQYMAEDGMINDWHHVHLAGLARGGAGLLVVEATAVAPEGRITPGCAGIWSDAHAQ 80 (363)
T ss_dssp -CGGGSCEEETTEEESSSEEECCCCCCCCBTTBCCHHHHHHHHHHHHTTCSEEEEEEEESSGGGCSSTTCCBCSSHHHHH
T ss_pred CcccCCCeeECCEEeeCceEECCCCCCcCCCCCCCHHHHHHHHHHHccCceEEEecceeeCccccCCCCcceecCHHHHH
Confidence 35799999999999999999999985 478888888 556799999999999887532 3344444
Q ss_pred hhhh----cCCCCCcEEEEecCC------------------------------------C----------------HHHH
Q 020423 116 RFLA----FSPEQHPIVLQIGGS------------------------------------N----------------LDNL 139 (326)
Q Consensus 116 ~~~~----~~~~~~piivQL~g~------------------------------------~----------------~~~f 139 (326)
.|.+ +|+.+.++++||+|. . .++|
T Consensus 81 ~~~~~~~~vh~~G~~i~~QL~H~Gr~~~~~~~~~~~~~~~~~~~~~~~~~~pS~~~~~~~~~~~p~~mt~~eI~~ii~~f 160 (363)
T 3l5l_A 81 AFVPVVQAIKAAGSVPGIQIAHAGRKASANRPWEGDDHIAADDTRGWETIAPSAIAFGAHLPKVPREMTLDDIARVKQDF 160 (363)
T ss_dssp HHHHHHHHHHHTTCEEEEEEECCGGGCSBCCGGGTSSBCCTTCTTCCCCEESSSCCCBTTBCCCCEECCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCEEEEEeccCCccccccccccccccccccccCCCcccCCCCCccCCCCCCCCccCCHHHHHHHHHHH
Confidence 4432 788999999999741 0 2689
Q ss_pred HHHHHHHHHCCCCEEEecCC---------CCCCcccCCCCccccccCCHHHHHHHHHHHHhcC--CCcEEEEeccCC-CC
Q 020423 140 AKATELANAYNYDEINLNCG---------CPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGV-DD 207 (326)
Q Consensus 140 ~~aA~~a~~aG~d~Iein~g---------~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~--~~pv~vK~r~g~-~~ 207 (326)
+++|++++++|||+||||++ ||.. |.|+|+|||+++||++|+.|++++||+++ ++||.+|++... .+
T Consensus 161 ~~aA~~a~~aGfDgVEih~a~GyLl~qFlsp~~-N~R~D~yGGslenR~r~~~eiv~aVr~avg~d~pV~vRis~~~~~~ 239 (363)
T 3l5l_A 161 VDAARRARDAGFEWIELHFAHGYLGQSFFSEHS-NKRTDAYGGSFDNRSRFLLETLAAVREVWPENLPLTARFGVLEYDG 239 (363)
T ss_dssp HHHHHHHHHHTCSEEEEEECTTSHHHHHHCTTT-CCCCSTTSSSHHHHHHHHHHHHHHHHTTSCTTSCEEEEEEEECSSS
T ss_pred HHHHHHHHHcCCCEEEEccccchHHHHccCCCc-CCCCcccCcCHHHHHHHHHHHHHHHHHHcCCCceEEEEecchhcCC
Confidence 99999999999999999987 6885 69999999999999999999999999998 579999999742 11
Q ss_pred -C-ccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHH
Q 020423 208 -H-DSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAA 285 (326)
Q Consensus 208 -~-~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~ 285 (326)
. .+.++..+ +++.+++.|+|+|+++++........ +..+...++.++++++.. ++|||++|||+++++++++
T Consensus 240 ~G~~~~~~~~~-la~~L~~~Gvd~i~vs~g~~~~~~~~----~~~~~~~~~~~~~ir~~~-~iPVi~~GgI~s~e~a~~~ 313 (363)
T 3l5l_A 240 RDEQTLEESIE-LARRFKAGGLDLLSVSVGFTIPDTNI----PWGPAFMGPIAERVRREA-KLPVTSAWGFGTPQLAEAA 313 (363)
T ss_dssp CHHHHHHHHHH-HHHHHHHTTCCEEEEEECCCSSCCCC----CCCTTTTHHHHHHHHHHH-TCCEEECSSTTSHHHHHHH
T ss_pred CCCCCHHHHHH-HHHHHHHcCCCEEEEecCcccccccc----CCCcchhHHHHHHHHHHc-CCcEEEeCCCCCHHHHHHH
Confidence 1 23455555 56778899999999997542111000 001122466677776664 8999999999999999999
Q ss_pred HHhC-CChhhhhHHHHhCCchhHHhHHHhh
Q 020423 286 LRKG-AHHVMVGRAAYQNPWYTLGHVDTAI 314 (326)
Q Consensus 286 l~~G-aD~V~iGRall~dP~l~~~~i~~~~ 314 (326)
++.| ||+|++||++++||+ |.+++.+.+
T Consensus 314 l~~G~aD~V~iGR~~lanPd-l~~k~~~~l 342 (363)
T 3l5l_A 314 LQANQLDLVSVGRAHLADPH-WAYFAAKEL 342 (363)
T ss_dssp HHTTSCSEEECCHHHHHCTT-HHHHHHHHT
T ss_pred HHCCCccEEEecHHHHhCch-HHHHHHHHc
Confidence 9988 999999999999999 566666654
|
| >1vyr_A Pentaerythritol tetranitrate reductase; oxidoreductase, flavoenzyme, explosive degradation, steroid binding; HET: FMN TNF; 0.9A {Enterobacter cloacae} SCOP: c.1.4.1 PDB: 1gvq_A* 1gvr_A* 1gvs_A* 1h50_A* 1h51_A* 1h60_A* 1h61_A* 1h62_A* 1h63_A* 1gvo_A* 2aba_A* 3f03_K* 3kft_A* 3p7y_A* 3p80_A* 3p81_A* 3p62_A* 3p8i_A* 2abb_A* 3p67_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-43 Score=333.14 Aligned_cols=244 Identities=13% Similarity=0.130 Sum_probs=196.7
Q ss_pred cccCCccccccCeecCCcEEEccCCCC---------ChHHHHHHHHHcCCCcEEEecceeecccc---------ccccch
Q 020423 53 IILHTKAEMVARQYLPPWFSVAPMMDW---------TDNHYRTLARLISKHAWLYTEMLAAETII---------YQQGNL 114 (326)
Q Consensus 53 ~~~l~~p~~ig~~~l~nrivlAPM~~~---------s~~~~r~~~~~~Gg~gli~te~~~~~~~~---------~~~~~~ 114 (326)
+..||+|++||+++||||++||||++. |+.++++|++++| +|||+||++.+++.. ++++++
T Consensus 2 ~~~Lf~P~~ig~~~l~NRiv~aPm~~~~a~~~~g~~t~~~~~~y~~rAg-~GLiite~~~v~~~g~~~~~~~gi~~d~~i 80 (364)
T 1vyr_A 2 AEKLFTPLKVGAVTAPNRVFMAPLTRLRSIEPGDIPTPLMGEYYRQRAS-AGLIISEATQISAQAKGYAGAPGLHSPEQI 80 (364)
T ss_dssp CCSTTSCEEETTEEESSSEEECCCCCCCCBTTTTBCCHHHHHHHHHTTT-SSEEEEEEEESSSTTCCSTTCCBSSSHHHH
T ss_pred ccccCCCeeECCEEECCccEECCCCCCcccCCCCCCCHHHHHHHHHHhc-CCEEEEccccccccccCCCCCcccCCHHHH
Confidence 457999999999999999999999864 6888999988875 899999999877432 233343
Q ss_pred hhhhh----cCCCCCcEEEEecC------------------------------------------CCH------------
Q 020423 115 DRFLA----FSPEQHPIVLQIGG------------------------------------------SNL------------ 136 (326)
Q Consensus 115 ~~~~~----~~~~~~piivQL~g------------------------------------------~~~------------ 136 (326)
+.|.+ +|+.+.++++||+| ..|
T Consensus 81 ~~~~~l~~~vh~~g~~i~~QL~H~Gr~~~~~~~~~g~~~~apS~i~~~~~~~~~~~~g~~~~~~~~~p~~mt~~eI~~~i 160 (364)
T 1vyr_A 81 AAWKKITAGVHAEDGRIAVQLWHTGRISHSSIQPGGQAPVSASALNANTRTSLRDENGNAIRVDTTTPRALELDEIPGIV 160 (364)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEECCTTSSCGGGSGGGCCCEESSSCCCCSEEEEECTTSCEEEEECCCCEECCGGGHHHHH
T ss_pred HHHHHHHHHHHhcCCeEEEEeccCCcccCcccccCCCccccCCCcccccccccccccccccccCCCCCCcCCHHHHHHHH
Confidence 33432 68899999999985 112
Q ss_pred HHHHHHHHHHHHCCCCEEEecCCC---------CCCcccCCCCccccccCCHHHHHHHHHHHHhcCC-CcEEEEeccC--
Q 020423 137 DNLAKATELANAYNYDEINLNCGC---------PSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTN-VPVSVKCRIG-- 204 (326)
Q Consensus 137 ~~f~~aA~~a~~aG~d~Iein~g~---------P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~-~pv~vK~r~g-- 204 (326)
++|+++|++++++|||+||||++| |.. |+|+|+|||+++||++++.|++++||++++ .||.+|++.+
T Consensus 161 ~~f~~aA~~a~~aGfDgVeih~a~GyLl~qFlsp~~-N~R~D~yGGslenr~r~~~eiv~avr~~vg~~~v~vrls~~~~ 239 (364)
T 1vyr_A 161 NDFRQAVANAREAGFDLVELHSAHGYLLHQFLSPSS-NQRTDQYGGSVENRARLVLEVVDAVCNEWSADRIGIRVSPIGT 239 (364)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEECTTSHHHHHHCTTT-CCCCSTTSSSHHHHTHHHHHHHHHHHHHSCGGGEEEEECCSSC
T ss_pred HHHHHHHHHHHHcCCCEEEEcCccchHHHhccCCcc-cccCCcCCcchhcChhhHHHHHHHHHHhcCCCcEEEEEccccc
Confidence 699999999999999999999986 764 689999999999999999999999999984 3999999986
Q ss_pred CCC----CccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHH
Q 020423 205 VDD----HDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVD 280 (326)
Q Consensus 205 ~~~----~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~ 280 (326)
+.+ ..+.++..+ +++.+++.|+|+|+++++... .. ++..++.++++++.. ++|||++||| +++
T Consensus 240 ~~~~~~~~~~~~~~~~-~a~~l~~~G~d~i~v~~~~~~-~~---------~~~~~~~~~~v~~~~-~iPvi~~Ggi-t~~ 306 (364)
T 1vyr_A 240 FQNVDNGPNEEADALY-LIEELAKRGIAYLHMSETDLA-GG---------KPYSEAFRQKVRERF-HGVIIGAGAY-TAE 306 (364)
T ss_dssp BTTBCCCTTHHHHHHH-HHHHHHHTTCSEEEEECCBTT-BC---------CCCCHHHHHHHHHHC-CSEEEEESSC-CHH
T ss_pred cccccCCCCCHHHHHH-HHHHHHHhCCCEEEEecCccc-CC---------CcccHHHHHHHHHHC-CCCEEEECCc-CHH
Confidence 321 224555555 567788999999999986421 11 112366777777665 9999999999 899
Q ss_pred HHHHHHHhC-CChhhhhHHHHhCCchhHHhHHH
Q 020423 281 EVNAALRKG-AHHVMVGRAAYQNPWYTLGHVDT 312 (326)
Q Consensus 281 da~~~l~~G-aD~V~iGRall~dP~l~~~~i~~ 312 (326)
+++++++.| ||+|++||+++.||++ .+++.+
T Consensus 307 ~a~~~l~~g~aD~V~~gR~~l~~P~~-~~~~~~ 338 (364)
T 1vyr_A 307 KAEDLIGKGLIDAVAFGRDYIANPDL-VARLQK 338 (364)
T ss_dssp HHHHHHHTTSCSEEEESHHHHHCTTH-HHHHHH
T ss_pred HHHHHHHCCCccEEEECHHHHhChhH-HHHHHc
Confidence 999999977 9999999999999995 555554
|
| >2r14_A Morphinone reductase; H-tunnelling, flavoprotein, NADH, hydride transfer, oxidoreductase; HET: FMN TXD; 1.40A {Pseudomonas putida} PDB: 3gx9_A* 1gwj_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-43 Score=336.00 Aligned_cols=245 Identities=12% Similarity=0.069 Sum_probs=196.1
Q ss_pred cccCCccccccCeecCCcEEEccCCCC-------ChHHHHHHHHHcCCCcEEEecceeecccc---------ccccchhh
Q 020423 53 IILHTKAEMVARQYLPPWFSVAPMMDW-------TDNHYRTLARLISKHAWLYTEMLAAETII---------YQQGNLDR 116 (326)
Q Consensus 53 ~~~l~~p~~ig~~~l~nrivlAPM~~~-------s~~~~r~~~~~~Gg~gli~te~~~~~~~~---------~~~~~~~~ 116 (326)
+..||+|++||+++|||||+||||++. |+.++++|++++| +|||+||++.+++.. +++++++.
T Consensus 8 ~~~Lf~P~~ig~~~l~NRiv~aPm~~~~a~~g~pt~~~~~~y~~rA~-~GLiitE~~~v~~~g~~~~~~~gi~~d~~i~~ 86 (377)
T 2r14_A 8 NPGLFTPLQLGSLSLPNRVIMAPLTRSRTPDSVPGRLQQIYYGQRAS-AGLIISEATNISPTARGYVYTPGIWTDAQEAG 86 (377)
T ss_dssp CCCTTSCEEETTEEESCSEEECCCCCCCCTTSCCCHHHHHHHHHTTT-SSCEEEEEEESSGGGCCBTTCCBSSSHHHHHH
T ss_pred hhhcCCCeeECCEEecCCeEECCCcCCcCCCCCCCHHHHHHHHHHhc-CCEEEEcceeeccccccCCCCcccCCHHHHHH
Confidence 457999999999999999999999975 8999999988876 899999999887432 23334333
Q ss_pred hhh----cCCCCCcEEEEecCC-------------------------------------------CH------------H
Q 020423 117 FLA----FSPEQHPIVLQIGGS-------------------------------------------NL------------D 137 (326)
Q Consensus 117 ~~~----~~~~~~piivQL~g~-------------------------------------------~~------------~ 137 (326)
|.+ +|+++.++++||+|. .| +
T Consensus 87 ~k~l~~avh~~G~~i~~QL~H~Gr~~~~~~~~~~~~~~apS~i~~~~~~~~~~~~~~~~~~~~~~~p~~mt~~eI~~~i~ 166 (377)
T 2r14_A 87 WKGVVEAVHAKGGRIALQLWHVGRVSHELVQPDGQQPVAPSALKAEGAECFVEFEDGTAGLHPTSTPRALETDEIPGIVE 166 (377)
T ss_dssp HHHHHHHHHHTTCCEEEEEECCTTSCCTTTSGGGCCCEESSSCCCTTCEEEEECTTSCEEEEECCCCEECCGGGHHHHHH
T ss_pred HHHHHHHHhhcCCeEEEEccCCccccccccccCCCcccCCCcccccccccccccccccccccCCCCCccCCHHHHHHHHH
Confidence 332 688999999999861 12 7
Q ss_pred HHHHHHHHHHHCCCCEEEecCCC---------CCCcccCCCCccccccCCHHHHHHHHHHHHhcCCC-cEEEEeccCC-C
Q 020423 138 NLAKATELANAYNYDEINLNCGC---------PSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNV-PVSVKCRIGV-D 206 (326)
Q Consensus 138 ~f~~aA~~a~~aG~d~Iein~g~---------P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~-pv~vK~r~g~-~ 206 (326)
+|+++|++++++|||+||||++| |.. |+|+|+|||+++||++++.|++++||++++. ||.+|++... .
T Consensus 167 ~f~~aA~~a~~aGfDgVEIh~a~GYLl~QFlsp~~-N~R~D~yGGslenR~r~~~eiv~aVr~avg~~~v~vrls~~~~~ 245 (377)
T 2r14_A 167 DYRQAAQRAKRAGFDMVEVHAANACLPNQFLATGT-NRRTDQYGGSIENRARFPLEVVDAVAEVFGPERVGIRLTPFLEL 245 (377)
T ss_dssp HHHHHHHHHHHHTCSEEEEEECTTCHHHHHHSTTT-CCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGGGEEEEECTTCCC
T ss_pred HHHHHHHHHHHcCCCEEEEcCcccchHHhccCCcc-ccCCCccCcchhhchHHHHHHHHHHHHHcCCCcEEEEecccccc
Confidence 99999999999999999999987 874 5899999999999999999999999999853 9999999852 1
Q ss_pred ----CCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHH
Q 020423 207 ----DHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEV 282 (326)
Q Consensus 207 ----~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da 282 (326)
+..+.++..+ +++.+++.|+|+|++|+++.. ... ... .++.++++++.+ ++|||++||| +++++
T Consensus 246 ~~~~~~~~~~~~~~-la~~le~~Gvd~i~v~~~~~~-~~~------~~~--~~~~~~~ik~~~-~iPvi~~Ggi-~~~~a 313 (377)
T 2r14_A 246 FGLTDDEPEAMAFY-LAGELDRRGLAYLHFNEPDWI-GGD------ITY--PEGFREQMRQRF-KGGLIYCGNY-DAGRA 313 (377)
T ss_dssp TTCCCSCHHHHHHH-HHHHHHHTTCSEEEEECCC-------------CC--CTTHHHHHHHHC-CSEEEEESSC-CHHHH
T ss_pred CCCCCCCCHHHHHH-HHHHHHHcCCCEEEEeCCccc-CCC------Ccc--hHHHHHHHHHHC-CCCEEEECCC-CHHHH
Confidence 2234555555 567788999999999987531 110 001 256666777665 8999999999 69999
Q ss_pred HHHHHhC-CChhhhhHHHHhCCchhHHhHHH
Q 020423 283 NAALRKG-AHHVMVGRAAYQNPWYTLGHVDT 312 (326)
Q Consensus 283 ~~~l~~G-aD~V~iGRall~dP~l~~~~i~~ 312 (326)
+++++.| ||+|++||++++||+| .+++.+
T Consensus 314 ~~~l~~g~aD~V~igR~~l~~P~l-~~k~~~ 343 (377)
T 2r14_A 314 QARLDDNTADAVAFGRPFIANPDL-PERFRL 343 (377)
T ss_dssp HHHHHTTSCSEEEESHHHHHCTTH-HHHHHH
T ss_pred HHHHHCCCceEEeecHHHHhCchH-HHHHHc
Confidence 9999977 9999999999999995 555554
|
| >2hsa_B 12-oxophytodienoate reductase 3; alpha beta 8 barrel, flavoprotein, jasmonate biosynthesis, oxidoreductase; HET: FMN; 1.50A {Solanum lycopersicum} PDB: 2hs6_A* 3hgs_A* 2hs8_A* 3hgo_A* 1q45_A* 2g5w_A* 2q3o_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-43 Score=336.85 Aligned_cols=255 Identities=13% Similarity=0.096 Sum_probs=194.4
Q ss_pred cccccCCccccccCeecCCcEEEccCCCC-------ChHHHHHHHHHcCCCcEEEecceeecccc---------ccccch
Q 020423 51 QNIILHTKAEMVARQYLPPWFSVAPMMDW-------TDNHYRTLARLISKHAWLYTEMLAAETII---------YQQGNL 114 (326)
Q Consensus 51 ~~~~~l~~p~~ig~~~l~nrivlAPM~~~-------s~~~~r~~~~~~Gg~gli~te~~~~~~~~---------~~~~~~ 114 (326)
..+..||+|++||+++|||||+||||++. |+.++.+|.+++.|+|||+||++.+++.. ++++++
T Consensus 13 ~~~~~Lf~P~~ig~~~L~NRiv~aPm~~~~a~~g~pt~~~~~yy~~rA~G~GLIitE~~~v~~~g~~~~~~~gi~~d~~i 92 (402)
T 2hsa_B 13 DGNNPLFSPYKMGKFNLSHRVVLAPMTRCRALNNIPQAALGEYYEQRATAGGFLITEGTMISPTSAGFPHVPGIFTKEQV 92 (402)
T ss_dssp ----CTTSCEEETTEEESCSEEECCCCCCCSGGGCCCHHHHHHHHHHCCTTCEEECCCEESSTTCCCSTTCCBCSSHHHH
T ss_pred hhhhhcCCCeeECCEEecCCeEECCCCCCcCCCCCCCHHHHHHHHHHhccCCEEEecceeeccccccCCCCcccCCHHHH
Confidence 35568999999999999999999999864 67778888555434999999999887422 333444
Q ss_pred hhhh----hcCCCCCcEEEEecC----------------------------------------CCH------------HH
Q 020423 115 DRFL----AFSPEQHPIVLQIGG----------------------------------------SNL------------DN 138 (326)
Q Consensus 115 ~~~~----~~~~~~~piivQL~g----------------------------------------~~~------------~~ 138 (326)
+.|. .+|+.+.++++||+| ..| ++
T Consensus 93 ~~~k~l~~avh~~G~~i~~QL~H~Gr~~~~~~~~~g~~~~apS~v~~~~~~~~~~~~g~~~~~~~p~~mt~~eI~~ii~~ 172 (402)
T 2hsa_B 93 REWKKIVDVVHAKGAVIFCQLWHVGRASHEVYQPAGAAPISSTEKPISNRWRILMPDGTHGIYPKPRAIGTYEISQVVED 172 (402)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEECCTTSCCGGGCTTCCCCEESCSCCCCTTCEEECTTSCEEECCCCEECCGGGHHHHHHH
T ss_pred HHHHHHHHHHHhcCCeEEEEeccCCcccccccccCCCccccCCCcccccccccccccccccCCCCCccCCHHHHHHHHHH
Confidence 3443 268899999999985 112 79
Q ss_pred HHHHHHHHHHCCCCEEEecCCC---------CCCcccCCCCccccccCCHHHHHHHHHHHHhcCC-CcEEEEeccCC---
Q 020423 139 LAKATELANAYNYDEINLNCGC---------PSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTN-VPVSVKCRIGV--- 205 (326)
Q Consensus 139 f~~aA~~a~~aG~d~Iein~g~---------P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~-~pv~vK~r~g~--- 205 (326)
|+++|++++++|||+||||++| |.. |+|+|+|||+++||++|+.||+++||++++ .||.+|++...
T Consensus 173 f~~AA~~a~~AGfDgVEIh~ahGYLl~QFLsp~~-N~RtD~yGGslenR~rf~~Eiv~aVr~avg~~~V~vRls~~~~~~ 251 (402)
T 2hsa_B 173 YRRSALNAIEAGFDGIEIHGAHGYLIDQFLKDGI-NDRTDEYGGSLANRCKFITQVVQAVVSAIGADRVGVRVSPAIDHL 251 (402)
T ss_dssp HHHHHHHHHHTTCSEEEEECCTTSHHHHHHCTTT-CCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGGGEEEEECSSCCST
T ss_pred HHHHHHHHHHcCCCEEEECCccchHHHhccCCcc-CccCCccCcChhhhhHHHHHHHHHHHHHhCCCcEEEEeccccccC
Confidence 9999999999999999999986 874 689999999999999999999999999985 49999999862
Q ss_pred --CCCccHHHHHHHHHHHhhhCC------ccEEEEecCCcccCCCCcCCcCCCC-C-ccHHHHHHHHhcCCCceEEEeCC
Q 020423 206 --DDHDSYNQLCDFIYKVSSLSP------TRHFIIHSRKALLNGISPAENRTIP-P-LKYEYYYALLRDFPDLTFTLNGG 275 (326)
Q Consensus 206 --~~~~~~~e~~~~ia~~le~~G------vd~I~v~~~~~~~~g~~~~~~~~~~-~-~~~~~i~~i~~~~~~iPVIa~Gg 275 (326)
.+..+.++..+ +++.++++| +|+|++|+++... ...... .... + ..++.++++++.+ ++|||++||
T Consensus 252 g~~~~~~~~~~~~-la~~le~~G~~gg~~vd~i~v~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~vk~~~-~iPvi~~G~ 327 (402)
T 2hsa_B 252 DAMDSNPLSLGLA-VVERLNKIQLHSGSKLAYLHVTQPRYVA-YGQTEA-GRLGSEEEEARLMRTLRNAY-QGTFICSGG 327 (402)
T ss_dssp TCCCSCHHHHHHH-HHHHHHHHHHHHTSCCSEEEEECCCCCT-TTTSSS-TTTTHHHHHHHHHHHHHHHC-SSCEEEESS
T ss_pred CCCCCCCHHHHHH-HHHHHHhcCCccCCceEEEEEecCcccc-ccCCcc-ccccCCcchHHHHHHHHHHC-CCCEEEeCC
Confidence 12234555555 567788899 9999999875311 000000 0000 1 1356666676664 899999999
Q ss_pred CCCHHHHHHHHHhC-CChhhhhHHHHhCCchhHHhHHH
Q 020423 276 INTVDEVNAALRKG-AHHVMVGRAAYQNPWYTLGHVDT 312 (326)
Q Consensus 276 I~s~~da~~~l~~G-aD~V~iGRall~dP~l~~~~i~~ 312 (326)
| ++++++++++.| ||+|++||++|+||+| ++++.+
T Consensus 328 i-~~~~a~~~l~~g~aD~V~igR~~l~dP~l-~~k~~~ 363 (402)
T 2hsa_B 328 Y-TRELGIEAVAQGDADLVSYGRLFISNPDL-VMRIKL 363 (402)
T ss_dssp C-CHHHHHHHHHTTSCSEEEESHHHHHCTTH-HHHHHH
T ss_pred C-CHHHHHHHHHCCCCceeeecHHHHhCchH-HHHHHh
Confidence 9 999999999976 9999999999999995 555544
|
| >2gou_A Oxidoreductase, FMN-binding; OLD yeallow enzyme, flavoenzyme; HET: BOG FMN PE4; 1.40A {Shewanella oneidensis} PDB: 2gq8_A* 2gq9_A* 2gqa_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-43 Score=333.32 Aligned_cols=244 Identities=14% Similarity=0.108 Sum_probs=196.2
Q ss_pred cccCCccccccCeecCCcEEEccCCCC---------ChHHHHHHHHHcCCCcEEEecceeecccc---------ccccch
Q 020423 53 IILHTKAEMVARQYLPPWFSVAPMMDW---------TDNHYRTLARLISKHAWLYTEMLAAETII---------YQQGNL 114 (326)
Q Consensus 53 ~~~l~~p~~ig~~~l~nrivlAPM~~~---------s~~~~r~~~~~~Gg~gli~te~~~~~~~~---------~~~~~~ 114 (326)
+..||+|++||+++|||||+||||++. |+.++++|++++| +|||+||++.+++.. ++++++
T Consensus 2 ~~~Lf~P~~ig~~~l~NRiv~aPm~~~~a~~~~g~~t~~~~~~y~~rA~-~GLiite~~~v~~~g~~~~~~~gi~~d~~i 80 (365)
T 2gou_A 2 TQSLFQPITLGALTLKNRIVMPPMTRSRASQPGDVANHMMAIYYAQRAS-AGLIVSEGTQISPTAKGYAWTPGIYTPEQI 80 (365)
T ss_dssp CTGGGSCEEETTEEESSSEEECCCCCCCCBTTTTBCCHHHHHHHHTTTT-SSEEEEEEEESSGGGCCSTTCCBSSSHHHH
T ss_pred ccccCCCeeECCEEEcCceEECCCCCCcccCCCCCCCHHHHHHHHHHhc-CCEEEECceeecccccCCCCCCccCCHHHH
Confidence 457999999999999999999999875 4788999988776 899999999877432 233343
Q ss_pred hhhhh----cCCCCCcEEEEecC------------------------------------------CCH------------
Q 020423 115 DRFLA----FSPEQHPIVLQIGG------------------------------------------SNL------------ 136 (326)
Q Consensus 115 ~~~~~----~~~~~~piivQL~g------------------------------------------~~~------------ 136 (326)
+.|.+ +|+++.++++||+| ..|
T Consensus 81 ~~~~~l~~~vh~~g~~i~~QL~H~Gr~~~~~~~~g~~~~apS~i~~~~~~~~~~~~~g~~~~~~~~~p~~mt~~eI~~~i 160 (365)
T 2gou_A 81 AGWRIVTEAVHAKGCAIFAQLWHVGRVTHPDNIDGQQPISSSTLKAENVKVFVDNGSDEPGFVDVAVPRAMTKADIAQVI 160 (365)
T ss_dssp HHHHHHHHHHHHHSCEEEEEEECCTTSSCGGGTTTCCCEESSSCCCTTCEEEECCSSSSCEEEECCCCEECCHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCeEEEEeecCCCcccccccCCCCccCCCCccccccccccccccccccccCCCCCCcCCHHHHHHHH
Confidence 33432 68889999999985 112
Q ss_pred HHHHHHHHHHHHCCCCEEEecCCC---------CCCcccCCCCccccccCCHHHHHHHHHHHHhcCCC-cEEEEeccC-C
Q 020423 137 DNLAKATELANAYNYDEINLNCGC---------PSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNV-PVSVKCRIG-V 205 (326)
Q Consensus 137 ~~f~~aA~~a~~aG~d~Iein~g~---------P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~-pv~vK~r~g-~ 205 (326)
++|+++|++++++|||+||||++| |.. |.|+|+|||+++||++++.|++++||++++. ||.+|++.. +
T Consensus 161 ~~f~~aA~~a~~aGfDgVeih~a~gYLl~qFlsp~~-N~R~D~yGGslenr~r~~~eiv~avr~~vg~~pv~vris~~~~ 239 (365)
T 2gou_A 161 ADYRQAALNAMEAGFDGIELHAANGYLINQFIDSEA-NNRSDEYGGSLENRLRFLDEVVAALVDAIGAERVGVRLAPLTT 239 (365)
T ss_dssp HHHHHHHHHHHHTTCSEEEEECCTTSHHHHHHSGGG-CCCCSTTSSSHHHHTHHHHHHHHHHHHHHCGGGEEEEECSSCC
T ss_pred HHHHHHHHHHHHcCCCEEEEecccchhHhhccCCCc-cCcCcccCcchhhhHHHHHHHHHHHHHHcCCCcEEEEEccccc
Confidence 799999999999999999999987 764 6899999999999999999999999999853 999999983 2
Q ss_pred C----CCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHH
Q 020423 206 D----DHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDE 281 (326)
Q Consensus 206 ~----~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~d 281 (326)
. +..+.++..+ +++.+++.|+|+|++++++. .+. +...++.++++++.. ++|||++||| ++++
T Consensus 240 ~~~~~~~~~~~~~~~-~a~~l~~~G~d~i~v~~~~~--~~~--------~~~~~~~~~~i~~~~-~iPvi~~Ggi-~~~~ 306 (365)
T 2gou_A 240 LNGTVDADPILTYTA-AAALLNKHRIVYLHIAEVDW--DDA--------PDTPVSFKRALREAY-QGVLIYAGRY-NAEK 306 (365)
T ss_dssp TTSCCCSSHHHHHHH-HHHHHHHTTCSEEEEECCBT--TBC--------CCCCHHHHHHHHHHC-CSEEEEESSC-CHHH
T ss_pred cCCCCCCCCHHHHHH-HHHHHHHcCCCEEEEeCCCc--CCC--------CCccHHHHHHHHHHC-CCcEEEeCCC-CHHH
Confidence 1 2234555555 56778899999999998642 110 111256677777665 8999999999 9999
Q ss_pred HHHHHHhC-CChhhhhHHHHhCCchhHHhHHH
Q 020423 282 VNAALRKG-AHHVMVGRAAYQNPWYTLGHVDT 312 (326)
Q Consensus 282 a~~~l~~G-aD~V~iGRall~dP~l~~~~i~~ 312 (326)
++++++.| ||+|++||+++.||++ .+++.+
T Consensus 307 a~~~l~~g~aD~V~igR~~i~~P~l-~~~~~~ 337 (365)
T 2gou_A 307 AEQAINDGLADMIGFGRPFIANPDL-PERLRH 337 (365)
T ss_dssp HHHHHHTTSCSEEECCHHHHHCTTH-HHHHHH
T ss_pred HHHHHHCCCcceehhcHHHHhCchH-HHHHHc
Confidence 99999987 9999999999999995 555554
|
| >1vhn_A Putative flavin oxidoreducatase; structural genomics, unknown function; HET: FMN; 1.59A {Thermotoga maritima} SCOP: c.1.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-43 Score=330.53 Aligned_cols=231 Identities=23% Similarity=0.402 Sum_probs=191.1
Q ss_pred eecCCcEEEccCCCCChHHHHHHHHHcCCCcEEEecceeeccccccccchhhhhhcCCCCCcEEEEecCCCHHHHHHHHH
Q 020423 65 QYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSNLDNLAKATE 144 (326)
Q Consensus 65 ~~l~nrivlAPM~~~s~~~~r~~~~~~Gg~gli~te~~~~~~~~~~~~~~~~~~~~~~~~~piivQL~g~~~~~f~~aA~ 144 (326)
++++||+++|||+++|+.+|+.++++.| +|+++|||+++++..+......+.+ +|+++.|+++||+|+++++|+++|+
T Consensus 1 ~~l~nri~~APM~~~t~~~~r~~~~~~G-~gli~te~~~~~~~~~~~~~~~~~l-~~~~~~~~~~QL~g~~~~~~~~aa~ 78 (318)
T 1vhn_A 1 MSLEVKVGLAPMAGYTDSAFRTLAFEWG-ADFAFSEMVSAKGFLMNSQKTEELL-PQPHERNVAVQIFGSEPNELSEAAR 78 (318)
T ss_dssp ----CEEEECCCTTTCSHHHHHHHHTTT-CCCEECSCEEHHHHHTTCHHHHHHS-CCTTCTTEEEEEECSCHHHHHHHHH
T ss_pred CccCCCEEECCCCCCCcHHHHHHHHHHC-cCEEEeCCEEEcccccCCHhHHHhh-hCcCCCeEEEEeCCCCHHHHHHHHH
Confidence 4689999999999999999998877665 7999999999888765543333344 7888999999999999999999999
Q ss_pred HHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHHHHhhh
Q 020423 145 LANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSL 224 (326)
Q Consensus 145 ~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~ 224 (326)
+++++ ||+||||++||.. +.|+|+||+++++|++++.|+++++++.+++||++|+|.|+++.+.. + +++.+++
T Consensus 79 ~a~~~-~d~Iein~gcP~~-~~r~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~G~~~~~~~-~----~a~~l~~ 151 (318)
T 1vhn_A 79 ILSEK-YKWIDLNAGCPVR-KVVKEGAGGALLKDLRHFRYIVRELRKSVSGKFSVKTRLGWEKNEVE-E----IYRILVE 151 (318)
T ss_dssp HHTTT-CSEEEEEECCCCH-HHHHTTCGGGGGSCHHHHHHHHHHHHHHCSSEEEEEEESCSSSCCHH-H----HHHHHHH
T ss_pred HHHHh-CCEEEEECCCCcH-hcCCCCcccchhhCHHHHHHHHHHHHHhhCCCEEEEecCCCChHHHH-H----HHHHHHH
Confidence 99999 9999999999995 46789999999999999999999999999999999999998775433 2 3556788
Q ss_pred CCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHH-hCCChhhhhHHHHhCC
Q 020423 225 SPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQNP 303 (326)
Q Consensus 225 ~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~-~GaD~V~iGRall~dP 303 (326)
+|+|+|+||+++.. .+.+ ++..|+.+.++++ ++|||++|||.|++|+.++++ .|||+||+||+++.||
T Consensus 152 ~G~d~i~v~g~~~~-~~~~-------~~~~~~~i~~i~~---~ipVi~~GgI~s~~da~~~l~~~gad~V~iGR~~l~~P 220 (318)
T 1vhn_A 152 EGVDEVFIHTRTVV-QSFT-------GRAEWKALSVLEK---RIPTFVSGDIFTPEDAKRALEESGCDGLLVARGAIGRP 220 (318)
T ss_dssp TTCCEEEEESSCTT-TTTS-------SCCCGGGGGGSCC---SSCEEEESSCCSHHHHHHHHHHHCCSEEEESGGGTTCT
T ss_pred hCCCEEEEcCCCcc-ccCC-------CCcCHHHHHHHHc---CCeEEEECCcCCHHHHHHHHHcCCCCEEEECHHHHhCc
Confidence 99999999998752 1211 1234666655543 899999999999999999999 7999999999999999
Q ss_pred chhHHhHHHhhh-C
Q 020423 304 WYTLGHVDTAIY-G 316 (326)
Q Consensus 304 ~l~~~~i~~~~~-~ 316 (326)
|+ ..++.+.++ |
T Consensus 221 ~l-~~~~~~~~~~g 233 (318)
T 1vhn_A 221 WI-FKQIKDFLRSG 233 (318)
T ss_dssp TH-HHHHHHHHHHS
T ss_pred ch-HHHHHHHHhCC
Confidence 95 666666665 5
|
| >1icp_A OPR1, 12-oxophytodienoate reductase 1; beta-alpha-barrel, protein-FMN-PEG complex, oxidoreductase; HET: FMN 2PE; 1.90A {Solanum lycopersicum} SCOP: c.1.4.1 PDB: 1icq_A* 1ics_A* 3hgr_A* 1vji_A* 2q3r_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-42 Score=332.08 Aligned_cols=247 Identities=14% Similarity=0.064 Sum_probs=192.5
Q ss_pred cccCCccccccCeecCCcEEEccCCCC-------ChHHHHHHHHHcCCCcEEEecceeecccc---------ccccchhh
Q 020423 53 IILHTKAEMVARQYLPPWFSVAPMMDW-------TDNHYRTLARLISKHAWLYTEMLAAETII---------YQQGNLDR 116 (326)
Q Consensus 53 ~~~l~~p~~ig~~~l~nrivlAPM~~~-------s~~~~r~~~~~~Gg~gli~te~~~~~~~~---------~~~~~~~~ 116 (326)
+..||+|++||+++|||||+||||++. |+.++.||.+++-|+|||+||++.+++.. +++++++.
T Consensus 13 ~~~Lf~P~~ig~~~l~NRiv~aPm~~~~a~~g~pt~~~~~yy~~rA~g~GLiite~~~v~~~g~~~~~~~gi~~d~~i~~ 92 (376)
T 1icp_A 13 KIPLMSPCKMGKFELCHRVVLAPLTRQRSYGYIPQPHAILHYSQRSTNGGLLIGEATVISETGIGYKDVPGIWTKEQVEA 92 (376)
T ss_dssp CCGGGSCEEETTEEESCSEEECCCCCCCCGGGSCCHHHHHHHHHTCCTTCEEECCCEECSGGGCCSTTCCBCSSHHHHHH
T ss_pred hhhcCCCeeECCEEECCccEECCcCcCcCCCCCCCHHHHHHHHHhcCCeeEEEECceeeccccccCcccCccCCHHHHHH
Confidence 457999999999999999999999874 67788888665524999999999987432 23333333
Q ss_pred hh----hcCCCCCcEEEEecCC--------------------------------------CH------------HHHHHH
Q 020423 117 FL----AFSPEQHPIVLQIGGS--------------------------------------NL------------DNLAKA 142 (326)
Q Consensus 117 ~~----~~~~~~~piivQL~g~--------------------------------------~~------------~~f~~a 142 (326)
|. .+|+.+.++++||+|. .| ++|+++
T Consensus 93 ~k~l~~avh~~G~~i~~QL~H~Gr~~~~~~~~~~~~~~apS~~~~~~~~~~~~~~~~~~~~p~~mt~~eI~~~i~~f~~A 172 (376)
T 1icp_A 93 WKPIVDAVHAKGGIFFCQIWHVGRVSNKDFQPNGEDPISCTDRGLTPQIMSNGIDIAHFTRPRRLTTDEIPQIVNEFRVA 172 (376)
T ss_dssp HHHHHHHHHHTTCEEEEEEECCTTSSCTTTSGGGCCCEESSSCCCCCEECTTSSCEECCCCCEECCTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCeEEEEeecCCCCcCcccccCCCceecCCCCCCccccccccccccCCCCCCcCCHHHHHHHHHHHHHH
Confidence 32 2688999999999871 12 699999
Q ss_pred HHHHHHCCCCEEEecCCC---------CCCcccCCCCccccccCCHHHHHHHHHHHHhcCCC-cEEEEeccCC-----CC
Q 020423 143 TELANAYNYDEINLNCGC---------PSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNV-PVSVKCRIGV-----DD 207 (326)
Q Consensus 143 A~~a~~aG~d~Iein~g~---------P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~-pv~vK~r~g~-----~~ 207 (326)
|++++++|||+||||++| |.. |+|+|+|||+++||++++.|++++||++++. ||.+|++... ..
T Consensus 173 A~~a~~aGfDgVEih~a~GyLl~qFlsp~~-N~R~D~yGGslenR~r~~~eiv~aVr~avg~~~V~vrls~~~~~~g~~~ 251 (376)
T 1icp_A 173 ARNAIEAGFDGVEIHGAHGYLIDQFMKDQV-NDRSDKYGGSLENRCRFALEIVEAVANEIGSDRVGIRISPFAHYNEAGD 251 (376)
T ss_dssp HHHHHHTTCSEEEEEECTTSHHHHHHCTTT-CCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGGGEEEEECTTCCTTTCCC
T ss_pred HHHHHHcCCCEEEEcCccchhhhhccCCcc-cCCCCccCccHHHhHHHHHHHHHHHHHHhcCCceEEEeccccccCCCCC
Confidence 999999999999999986 774 6899999999999999999999999999853 9999999752 12
Q ss_pred CccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHH
Q 020423 208 HDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR 287 (326)
Q Consensus 208 ~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~ 287 (326)
..+.++..+ +++.++++|+|+|++|+++....+. . ...++.++++++.. ++|||++||| ++++++++++
T Consensus 252 ~~~~~~~~~-la~~le~~Gvd~i~v~~~~~~~~~~-~-------~~~~~~~~~vr~~~-~iPvi~~G~i-~~~~a~~~l~ 320 (376)
T 1icp_A 252 TNPTALGLY-MVESLNKYDLAYCHVVEPRMKTAWE-K-------IECTESLVPMRKAY-KGTFIVAGGY-DREDGNRALI 320 (376)
T ss_dssp SCHHHHHHH-HHHHHGGGCCSEEEEECCSCCC--------------CCCCSHHHHHHC-CSCEEEESSC-CHHHHHHHHH
T ss_pred CCCHHHHHH-HHHHHHHcCCCEEEEcCCcccCCCC-c-------cccHHHHHHHHHHc-CCCEEEeCCC-CHHHHHHHHH
Confidence 234445554 5678889999999999875321110 0 01123345566554 8999999999 8999999999
Q ss_pred hC-CChhhhhHHHHhCCchhHHhHHH
Q 020423 288 KG-AHHVMVGRAAYQNPWYTLGHVDT 312 (326)
Q Consensus 288 ~G-aD~V~iGRall~dP~l~~~~i~~ 312 (326)
.| ||+|++||++|+||+| ++++.+
T Consensus 321 ~g~aD~V~~gR~~l~~P~l-~~k~~~ 345 (376)
T 1icp_A 321 EDRADLVAYGRLFISNPDL-PKRFEL 345 (376)
T ss_dssp TTSCSEEEESHHHHHCTTH-HHHHHH
T ss_pred CCCCcEEeecHHHHhCccH-HHHHHc
Confidence 76 9999999999999995 555544
|
| >4ab4_A Xenobiotic reductase B; oxidoreductase, OLD yellow enzyme; HET: FMN TNL EDO; 1.50A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-42 Score=328.15 Aligned_cols=239 Identities=15% Similarity=0.132 Sum_probs=189.9
Q ss_pred cccCCccccccCeecCCcEEEccCCC--------CChHHHHHHHHHcCCCcEEEecceeecccc---------ccccchh
Q 020423 53 IILHTKAEMVARQYLPPWFSVAPMMD--------WTDNHYRTLARLISKHAWLYTEMLAAETII---------YQQGNLD 115 (326)
Q Consensus 53 ~~~l~~p~~ig~~~l~nrivlAPM~~--------~s~~~~r~~~~~~Gg~gli~te~~~~~~~~---------~~~~~~~ 115 (326)
|..||+|++||+++|||||+||||++ .|+.++++|.+++. +|||+||.+.+++.. ++++++.
T Consensus 1 M~~Lf~P~~ig~~~lkNRiv~aPm~~~~a~~~g~pt~~~~~yY~~rA~-~GLIite~~~V~~~g~~~~~~~gi~~d~~i~ 79 (362)
T 4ab4_A 1 MTTLFDPIKLGDLQLPNRIIMAPLTRCRADEGRVPNALMAEYYVQRAS-AGLILSEATSVSPMGVGYPDTPGIWNDEQVR 79 (362)
T ss_dssp -CCTTSCEEETTEEESCSEEECCCCCCCCBTTTBCCHHHHHHHHHTTT-SSEEEEEEEESSGGGCCSTTCCBCSSHHHHH
T ss_pred CcccCCCeeECCEEeeCccEECCccCCccCCCCCCCHHHHHHHHHHHh-hCEEeeeeeEecccccCCCCCCCcCCHHHHH
Confidence 35799999999999999999999975 36778888877666 799999998887532 3344444
Q ss_pred hhhh----cCCCCCcEEEEecCCC------------------------------------------------HHHHHHHH
Q 020423 116 RFLA----FSPEQHPIVLQIGGSN------------------------------------------------LDNLAKAT 143 (326)
Q Consensus 116 ~~~~----~~~~~~piivQL~g~~------------------------------------------------~~~f~~aA 143 (326)
.|.+ +|+.+.++++||++.. .++|+++|
T Consensus 80 ~~k~l~~avH~~G~~i~~QL~H~Gr~~~~~~~~g~~~vapS~i~~~~~~~~~~~~~~~~~pr~mt~~eI~~ii~~f~~AA 159 (362)
T 4ab4_A 80 GWNNVTKAVHAAGGRIFLQLWHVGRISHPSYLNGELPVAPSAIQPKGHVSLVRPLSDYPTPRALETEEINDIVEAYRSGA 159 (362)
T ss_dssp HHHHHHHHHHHTTCCEEEEEECCTTSCCGGGTTTCCCEESSCCCCSSBCSSCSSCCBCCCCEECCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCEEEEEeccCcccccccccCCCcccCCCCCCCCccccccccccCCCCCCcCCHHHHHHHHHHHHHHH
Confidence 4433 7889999999996410 36899999
Q ss_pred HHHHHCCCCEEEecCCC---------CCCcccCCCCccccccCCHHHHHHHHHHHHhcCCC-cEEEEeccCCC-----CC
Q 020423 144 ELANAYNYDEINLNCGC---------PSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNV-PVSVKCRIGVD-----DH 208 (326)
Q Consensus 144 ~~a~~aG~d~Iein~g~---------P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~-pv~vK~r~g~~-----~~ 208 (326)
++++++|||+||||++| |.. |+|+|+|||+++||++|+.|++++||++++. ||.+|++.... ..
T Consensus 160 ~~a~~aGfDgVEih~a~GYLl~QFLSp~~-N~RtD~yGGslenR~rf~~eiv~aVr~~vg~~~v~vRls~~~~~~g~~~~ 238 (362)
T 4ab4_A 160 ENAKAAGFDGVEIHGANGYLLDQFLQSST-NQRTDRYGGSLENRARLLLEVTDAAIEVWGAQRVGVHLAPRADAHDMGDA 238 (362)
T ss_dssp HHHHHTTCSEEEEECCTTSHHHHHHSTTT-CCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGGGEEEEECTTCCSSSCCCT
T ss_pred HHHHHcCCCEEEECCcCccHHHhhcCCcc-ccccCCCCCchhhHHHHHHHHHHHHHHhcCCCceEEEeeccccccccCCC
Confidence 99999999999999997 874 6999999999999999999999999999853 99999997521 11
Q ss_pred ccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHh
Q 020423 209 DSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRK 288 (326)
Q Consensus 209 ~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~ 288 (326)
.+.++..+ +++.++++|+|+|++++++. + + +.++++++.+ ++|||++||| ++++++++++.
T Consensus 239 ~~~~~~~~-la~~l~~~Gvd~i~v~~~~~---~---------~----~~~~~ik~~~-~iPvi~~Ggi-t~e~a~~~l~~ 299 (362)
T 4ab4_A 239 DRAETFTY-VARELGKRGIAFICSREREA---D---------D----SIGPLIKEAF-GGPYIVNERF-DKASANAALAS 299 (362)
T ss_dssp THHHHHHH-HHHHHHHTTCSEEEEECCCC---T---------T----CCHHHHHHHH-CSCEEEESSC-CHHHHHHHHHT
T ss_pred CcHHHHHH-HHHHHHHhCCCEEEECCCCC---C---------H----HHHHHHHHHC-CCCEEEeCCC-CHHHHHHHHHc
Confidence 22444444 67778899999999998651 1 0 1234444443 8999999999 99999999997
Q ss_pred C-CChhhhhHHHHhCCchhHHhHHHh
Q 020423 289 G-AHHVMVGRAAYQNPWYTLGHVDTA 313 (326)
Q Consensus 289 G-aD~V~iGRall~dP~l~~~~i~~~ 313 (326)
| ||+|++||++++||+| ++++.+.
T Consensus 300 g~aD~V~iGR~~lanPdl-~~k~~~g 324 (362)
T 4ab4_A 300 GKADAVAFGVPFIANPDL-PARLAAD 324 (362)
T ss_dssp TSCSEEEESHHHHHCTTH-HHHHHTT
T ss_pred CCccEEEECHHhHhCcHH-HHHHHcC
Confidence 7 9999999999999995 5555553
|
| >3gka_A N-ethylmaleimide reductase; decode biostructures, ssgcid, niaid, targetdb bupsa00093A, structural genomics; HET: FMN; 2.30A {Burkholderia pseudomallei} SCOP: c.1.4.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-42 Score=328.29 Aligned_cols=240 Identities=16% Similarity=0.134 Sum_probs=190.8
Q ss_pred ccccCCccccccCeecCCcEEEccCCC--------CChHHHHHHHHHcCCCcEEEecceeecccc---------ccccch
Q 020423 52 NIILHTKAEMVARQYLPPWFSVAPMMD--------WTDNHYRTLARLISKHAWLYTEMLAAETII---------YQQGNL 114 (326)
Q Consensus 52 ~~~~l~~p~~ig~~~l~nrivlAPM~~--------~s~~~~r~~~~~~Gg~gli~te~~~~~~~~---------~~~~~~ 114 (326)
-+..||+|++||+++|||||+||||++ .|+.+++||.+++. +|||+||.+.+++.. ++++++
T Consensus 8 ~~~~~f~P~~ig~~~lkNRiv~aPm~~~~a~~~g~pt~~~~~yY~~rA~-~GLIite~~~V~~~g~~~~~~~gi~~d~~i 86 (361)
T 3gka_A 8 HMPSLFDPLTIGDLTLANRIIMAPLTRARAGDTRTPNALMARYYAERAS-AGLIISEATSVTPQGVGYASTPGIWSPEQV 86 (361)
T ss_dssp -CCCTTSCEEETTEEESCSEEECCCCCCCSTTTTCCCHHHHHHHHTTTT-SSEEEEEEEESSGGGCCSTTCCBSSSHHHH
T ss_pred cCccccCCeeECCEEecCccEECCCCCCccCCCCCCCHHHHHHHHHHHh-CCEEEEcceeecccccCCCCCCccCCHHHH
Confidence 457899999999999999999999975 36778888876665 799999999887532 334444
Q ss_pred hhhhh----cCCCCCcEEEEecCCC------------------------------------------------HHHHHHH
Q 020423 115 DRFLA----FSPEQHPIVLQIGGSN------------------------------------------------LDNLAKA 142 (326)
Q Consensus 115 ~~~~~----~~~~~~piivQL~g~~------------------------------------------------~~~f~~a 142 (326)
+.|.+ +|+.+.++++||++.. .++|+++
T Consensus 87 ~~~k~l~~avH~~G~~i~~QL~H~Gr~~~~~~~~g~~~vapS~i~~~~~~~~~~g~~~~~~pr~mt~~eI~~ii~~f~~A 166 (361)
T 3gka_A 87 DGWRLVTDAVHAAGGRIFLQLWHVGRVSDPVFLDGALPVAPSAIAPGGHVSLVRPQRPYVTPRALELDEIPGVVAAFRRG 166 (361)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEECCTTSCCGGGTTTCCCEESSSCCCSSBCSSCSSCCBCCCCEECCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCeEEEeeccCCccccccccCCCCcccCCCCCCCCcccccccccCCCCCccCCHHHHHHHHHHHHHH
Confidence 44433 7889999999996410 3689999
Q ss_pred HHHHHHCCCCEEEecCCC---------CCCcccCCCCccccccCCHHHHHHHHHHHHhcCCC-cEEEEeccCC-----CC
Q 020423 143 TELANAYNYDEINLNCGC---------PSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNV-PVSVKCRIGV-----DD 207 (326)
Q Consensus 143 A~~a~~aG~d~Iein~g~---------P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~-pv~vK~r~g~-----~~ 207 (326)
|++++++|||+||||++| |.. |+|+|+|||+++||++|+.|++++||++++. ||.+|++... .+
T Consensus 167 A~~A~~aGfDgVEih~a~GYLl~QFLsp~~-N~RtD~yGGslenR~rf~~evv~aVr~~vg~~~v~vRls~~~~~~g~~~ 245 (361)
T 3gka_A 167 AENARAAGFDGVEVHGANGYLLDQFLQDSA-NRRTDAYGGSIENRARLLLEVVDAAIDVWSAARVGVHLAPRGDAHTMGD 245 (361)
T ss_dssp HHHHHHTTCSEEEEECCTTSHHHHHHSTTT-CCCCSTTSSSHHHHSHHHHHHHHHHHHHHCGGGEEEEECTTCCSSSCCC
T ss_pred HHHHHHcCCCEEEECCcCccHHHhccCccc-ccccCCCCCChhhcHHHHHHHHHHHHHHcCCCeEEEecccccccCCCCC
Confidence 999999999999999997 874 6999999999999999999999999999853 9999999742 11
Q ss_pred CccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHH
Q 020423 208 HDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR 287 (326)
Q Consensus 208 ~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~ 287 (326)
..+.++..+ +++.++++|+|+|+++++.. + + +.++++++.+ ++|||++||| ++++++++++
T Consensus 246 ~~~~~~~~~-la~~l~~~Gvd~i~v~~~~~---~---------~----~~~~~ik~~~-~iPvi~~Ggi-t~e~a~~~l~ 306 (361)
T 3gka_A 246 SDPAATFGH-VARELGRRRIAFLFARESFG---G---------D----AIGQQLKAAF-GGPFIVNENF-TLDSAQAALD 306 (361)
T ss_dssp SCHHHHHHH-HHHHHHHTTCSEEEEECCCS---T---------T----CCHHHHHHHH-CSCEEEESSC-CHHHHHHHHH
T ss_pred CCcHHHHHH-HHHHHHHcCCCEEEECCCCC---C---------H----HHHHHHHHHc-CCCEEEeCCC-CHHHHHHHHH
Confidence 123444444 67778899999999998651 1 0 1234444443 8999999999 9999999999
Q ss_pred hC-CChhhhhHHHHhCCchhHHhHHHh
Q 020423 288 KG-AHHVMVGRAAYQNPWYTLGHVDTA 313 (326)
Q Consensus 288 ~G-aD~V~iGRall~dP~l~~~~i~~~ 313 (326)
.| ||+|++||++++||+| .+++.+.
T Consensus 307 ~G~aD~V~iGR~~ladPdl-~~k~~~g 332 (361)
T 3gka_A 307 AGQADAVAWGKLFIANPDL-PRRFKLN 332 (361)
T ss_dssp TTSCSEEEESHHHHHCTTH-HHHHHHT
T ss_pred cCCccEEEECHHhHhCcHH-HHHHHhC
Confidence 77 9999999999999995 5555553
|
| >1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-40 Score=344.06 Aligned_cols=264 Identities=10% Similarity=0.049 Sum_probs=198.6
Q ss_pred ccccCCccccccCeecCCcEEEccCCCC-Ch----HHHHHH-HHHcCCCcEEEecceeecccc----------ccccchh
Q 020423 52 NIILHTKAEMVARQYLPPWFSVAPMMDW-TD----NHYRTL-ARLISKHAWLYTEMLAAETII----------YQQGNLD 115 (326)
Q Consensus 52 ~~~~l~~p~~ig~~~l~nrivlAPM~~~-s~----~~~r~~-~~~~Gg~gli~te~~~~~~~~----------~~~~~~~ 115 (326)
++..||+|++||+++||||++||||++. ++ ...+|| .++.||+|||+||++++++.. +++++++
T Consensus 5 ~~~~Lf~p~~ig~~~l~NRiv~apm~~~~~~~~~~~~~~~y~~ra~gG~Gliite~~~v~~~~~~~~~~~~~~~~~~~~~ 84 (729)
T 1o94_A 5 KHDILFEPIQIGPKTLRNRFYQVPHCIGAGSDKPGFQSAHRSVKAEGGWAALNTEYCSINPESDDTHRLSARIWDEGDVR 84 (729)
T ss_dssp GGGGGGSCEEETTEEESSSEEECCCCCSCTTTCHHHHHHHHHHHHHTTCSEEEEEEEESSTTSCCTTSCCEECSSHHHHH
T ss_pred chhhcCCCeeECCEEECCccEECCCcCCcCCCCcHHHHHHHHHHhcCCCCEEEEcceEecCcccCCCCCCCccCChHHhH
Confidence 4678999999999999999999999864 22 444555 455699999999999886432 1222233
Q ss_pred hhh----hcCCCCCcEEEEecCC------------------------C---------------HHHHHHHHHHHHHCCCC
Q 020423 116 RFL----AFSPEQHPIVLQIGGS------------------------N---------------LDNLAKATELANAYNYD 152 (326)
Q Consensus 116 ~~~----~~~~~~~piivQL~g~------------------------~---------------~~~f~~aA~~a~~aG~d 152 (326)
.|. .+|+.+.++++||+|. . .++|+++|++++++|||
T Consensus 85 ~~~~~~~~vh~~g~~i~~Ql~h~Gr~~~~~~~~~~~~~ps~~~~~~~~~~~p~~~t~~eI~~~i~~f~~aA~~a~~aGfD 164 (729)
T 1o94_A 85 NLKAMTDEVHKYGALAGVELWYGGAHAPNMESRATPRGPSQYASEFETLSYCKEMDLSDIAQVQQFYVDAAKRSRDAGFD 164 (729)
T ss_dssp HHHHHHHHHHTTTCEEEEEEECCGGGSCCTTTCCCCEESSCCBCSSSTTCBCEECCHHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHhCCCeEEEEecCCCccccccccCCCCcCCCcccccccCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 332 2689999999999882 0 37999999999999999
Q ss_pred EEEecCCC---------CCCcccCCCCccccccCCHHHHHHHHHHHHhcC--CCcEEEEeccCCC---CCcc-HHHHHHH
Q 020423 153 EINLNCGC---------PSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVD---DHDS-YNQLCDF 217 (326)
Q Consensus 153 ~Iein~g~---------P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~--~~pv~vK~r~g~~---~~~~-~~e~~~~ 217 (326)
+||||++| |.. |+|+|+|||+++||++|+.|++++||+++ ++||.+|++.... ...+ .++..+
T Consensus 165 gVEih~a~gyLl~qFlsp~~-N~R~D~yGGs~enR~r~~~eiv~avr~~vg~~~pv~vrls~~~~~~~~G~~~~~~~~~- 242 (729)
T 1o94_A 165 IVYVYGAHSYLPLQFLNPYY-NKRTDKYGGSLENRARFWLETLEKVKHAVGSDCAIATRFGVDTVYGPGQIEAEVDGQK- 242 (729)
T ss_dssp EEEEEECTTCHHHHHHCTTT-CCCCSTTSSSHHHHTHHHHHHHHHHHHHHTTTSEEEEEEEEECSSCTTSCCTTTHHHH-
T ss_pred EEEEccccchHHHHhcCCcc-CCCcCcCCCCHHHHhHHHHHHHHHHHHHhCCCceEEEEEccccCcCCCCCCchHHHHH-
Confidence 99999998 774 68999999999999999999999999998 7899999986311 0111 224444
Q ss_pred HHHHhhhCCccEEEEecCCc--ccCCCCcCCcCCCCCc-cHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhC-CChh
Q 020423 218 IYKVSSLSPTRHFIIHSRKA--LLNGISPAENRTIPPL-KYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKG-AHHV 293 (326)
Q Consensus 218 ia~~le~~Gvd~I~v~~~~~--~~~g~~~~~~~~~~~~-~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~G-aD~V 293 (326)
+++.+++ ++|+++++.+.. +.....+. ...++. .+.+++++++. +++|||++|||.++++++++++.| ||+|
T Consensus 243 ~~~~l~~-~~d~~~v~~g~~~~~~~~~~~~--~~~~~~~~~~~~~~i~~~-~~~pvi~~G~i~~~~~a~~~l~~g~aD~V 318 (729)
T 1o94_A 243 FVEMADS-LVDMWDITIGDIAEWGEDAGPS--RFYQQGHTIPWVKLVKQV-SKKPVLGVGRYTDPEKMIEIVTKGYADII 318 (729)
T ss_dssp HHHHHGG-GCSEEEEEECCSTTGGGTSCCT--TTCCTTTTHHHHHHHHTT-CSSCEECCSCCCCHHHHHHHHHTTSCSBE
T ss_pred HHHHHHh-hcCEEEEeeecccccccccCCc--cccCccccHHHHHHHHHH-CCCEEEEeCCCCCHHHHHHHHHCCCCCEE
Confidence 4567776 799999997642 11100000 011222 35666666655 599999999999999999999976 9999
Q ss_pred hhhHHHHhCCchhHHhHHHhhhCCCCCCC
Q 020423 294 MVGRAAYQNPWYTLGHVDTAIYGAPSSGL 322 (326)
Q Consensus 294 ~iGRall~dP~l~~~~i~~~~~~~~~~~~ 322 (326)
++||++|+||+ |.+++.+......++|+
T Consensus 319 ~~gR~~l~~P~-~~~~~~~g~~~~~~~ci 346 (729)
T 1o94_A 319 GCARPSIADPF-LPQKVEQGRYDDIRVCI 346 (729)
T ss_dssp EESHHHHHCTT-HHHHHHTTCGGGCCCCC
T ss_pred EeCchhhcCch-HHHHHHcCCcccccccc
Confidence 99999999999 56777765554555554
|
| >1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-40 Score=340.25 Aligned_cols=263 Identities=13% Similarity=0.063 Sum_probs=200.8
Q ss_pred cccCCccccccCeecCCcEEEccCCC-CC------hHHHHHH-HHHcCCCcEEEecceeecccc---------ccccchh
Q 020423 53 IILHTKAEMVARQYLPPWFSVAPMMD-WT------DNHYRTL-ARLISKHAWLYTEMLAAETII---------YQQGNLD 115 (326)
Q Consensus 53 ~~~l~~p~~ig~~~l~nrivlAPM~~-~s------~~~~r~~-~~~~Gg~gli~te~~~~~~~~---------~~~~~~~ 115 (326)
+..||+|++||+++||||++||||++ .+ +...++| .++.||+||++||++++++.. +++++++
T Consensus 2 ~~~lf~p~~ig~~~l~nRi~~apm~~~~~~~~~~~~~~~~~y~~ra~gg~gliite~~~v~~~~~~~~~~~~~~~~~~~~ 81 (671)
T 1ps9_A 2 YPSLFAPLDLGFTTLKNRVLMGSMHTGLEEYPDGAERLAAFYAERARHGVALIVSGGIAPDLTGVGMEGGAMLNDASQIP 81 (671)
T ss_dssp CTTTTCCEECSSCEESSSEEECCCCCSCTTSTTHHHHHHHHHHHHHHTTCSEEEEEEEBSSSTTCSBTTCCBCCSGGGHH
T ss_pred ccccCCCeeECCEEEcCceEECCccCCcCCCCCCcHHHHHHHHHHhcCCCCEEEecccccCccccCCCCCCccCCHHHHH
Confidence 46899999999999999999999987 32 2335566 455689999999999876321 2344444
Q ss_pred hhhh----cCCCCCcEEEEecCC----------------------CH------------HHHHHHHHHHHHCCCCEEEec
Q 020423 116 RFLA----FSPEQHPIVLQIGGS----------------------NL------------DNLAKATELANAYNYDEINLN 157 (326)
Q Consensus 116 ~~~~----~~~~~~piivQL~g~----------------------~~------------~~f~~aA~~a~~aG~d~Iein 157 (326)
.|.+ +|+++.++++||+|. .| ++|+++|++++++|||+||||
T Consensus 82 ~~~~~~~~vh~~g~~i~~Ql~h~Gr~~~~~~~~~ps~~~~~~~~~~p~~~t~~ei~~~i~~~~~aA~~a~~aGfd~veih 161 (671)
T 1ps9_A 82 HHRTITEAVHQEGGKIALQILHTGRYSYQPHLVAPSALQAPINRFVPHELSHEEILQLIDNFARCAQLAREAGYDGVEVM 161 (671)
T ss_dssp HHHHHHHHHHHTTCCEEEEECCCGGGSBSTTCEESSSCCCTTCSSCCEECCHHHHHHHHHHHHHHHHHHHHTTCSEEEEE
T ss_pred HHHHHHHHHHhcCCEEEEEeccCCcccCCCCCcCCCCcccccCCCCCccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEc
Confidence 4432 688999999999973 22 789999999999999999999
Q ss_pred CCC---------CCCcccCCCCccccccCCHHHHHHHHHHHHhcC--CCcEEEEeccCC--CCCccHHHHHHHHHHHhhh
Q 020423 158 CGC---------PSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGV--DDHDSYNQLCDFIYKVSSL 224 (326)
Q Consensus 158 ~g~---------P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~--~~pv~vK~r~g~--~~~~~~~e~~~~ia~~le~ 224 (326)
++| |.. |+|+|+|||+++||++|+.|++++||+++ ++|+.+|++... ....+.++..+ +++.+++
T Consensus 162 ~~~gyl~~qFlsp~~-n~r~d~yGgs~~~r~r~~~eiv~avr~~vG~~~~v~vrls~~~~~~~g~~~~~~~~-~a~~l~~ 239 (671)
T 1ps9_A 162 GSEGYLINEFLTLRT-NQRSDQWGGDYRNRMRFAVEVVRAVRERVGNDFIIIYRLSMLDLVEDGGTFAETVE-LAQAIEA 239 (671)
T ss_dssp ECBTSHHHHHHCTTT-CCCCSTTSSSHHHHHHHHHHHHHHHHHHHCSSSEEEEEEEEECCSTTCCCHHHHHH-HHHHHHH
T ss_pred cccchHHHHhCCCcc-CCCcCcCCCcHHHHHHHHHHHHHHHHHHcCCCceEEEEECccccCCCCCCHHHHHH-HHHHHHh
Confidence 986 764 68999999999999999999999999998 789999999732 11234556555 5667788
Q ss_pred CCccEEEEecCCcccCCCCcCCcCCCCCc-cHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhC-CChhhhhHHHHhC
Q 020423 225 SPTRHFIIHSRKALLNGISPAENRTIPPL-KYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKG-AHHVMVGRAAYQN 302 (326)
Q Consensus 225 ~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~-~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~G-aD~V~iGRall~d 302 (326)
+|+|+|+++++..... .+......++. .++.++++++. .++|||++|||.++++++++++.| ||+|++||++++|
T Consensus 240 ~g~d~i~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~i~~~-~~iPvi~~Ggi~~~~~a~~~l~~g~aD~V~~gR~~l~~ 316 (671)
T 1ps9_A 240 AGATIINTGIGWHEAR--IPTIATPVPRGAFSWVTRKLKGH-VSLPLVTTNRINDPQVADDILSRGDADMVSMARPFLAD 316 (671)
T ss_dssp HTCSEEEEEECBTTCS--SCSSSTTSCTTTTHHHHHHHTTS-CSSCEEECSSCCSHHHHHHHHHTTSCSEEEESTHHHHC
T ss_pred cCCCEEEcCCCccccc--cccccccCCcchHHHHHHHHHHh-cCceEEEeCCCCCHHHHHHHHHcCCCCEEEeCHHHHhC
Confidence 9999999997643111 00000111222 24566666554 599999999999999999999987 9999999999999
Q ss_pred CchhHHhHHHhhhCCCCCC
Q 020423 303 PWYTLGHVDTAIYGAPSSG 321 (326)
Q Consensus 303 P~l~~~~i~~~~~~~~~~~ 321 (326)
|+ |.+++.+......++|
T Consensus 317 P~-l~~k~~~g~~~~~~~c 334 (671)
T 1ps9_A 317 AE-LLSKAQSGRADEINTC 334 (671)
T ss_dssp TT-HHHHHHTTCGGGCCCC
T ss_pred cH-HHHHHHcCCCCCcccc
Confidence 99 5777776655444444
|
| >3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-40 Score=341.95 Aligned_cols=263 Identities=8% Similarity=0.018 Sum_probs=195.3
Q ss_pred ccccCCccccccCeecCCcEEEccCCCCC----hHHHH-HH-HHHcCCCcEEEecceeecccc----------ccccchh
Q 020423 52 NIILHTKAEMVARQYLPPWFSVAPMMDWT----DNHYR-TL-ARLISKHAWLYTEMLAAETII----------YQQGNLD 115 (326)
Q Consensus 52 ~~~~l~~p~~ig~~~l~nrivlAPM~~~s----~~~~r-~~-~~~~Gg~gli~te~~~~~~~~----------~~~~~~~ 115 (326)
.+..||+|++||+++|||||+||||++.+ ...+. ++ .++.||+|||+||++.+++.. +++++++
T Consensus 10 ~~~~lf~p~~ig~~~l~NRiv~apm~~~~~~~~~~~~~~~~~~~a~gG~gliite~~~v~~~~~~~~~~~~~~~~~~~~~ 89 (690)
T 3k30_A 10 PYDVLFEPVQIGPFTTKNRFYQVPHCNGMGYRDPSAQASMRKIKAEGGWSAVCTEQVEIHATSDIAPFIELRIWDDQDLP 89 (690)
T ss_dssp TGGGGGCCCEETTEECSSSEEECCCCCSCSSSCHHHHHHHHHHHHHTTCSEEEEEEEECSGGGCCTTSCCEECSSGGGHH
T ss_pred cchhcCCCeeECCEEECCCeEeCCCcCCCCCCChHHHHHHHHHHhccCCEEEEecceEeccccccCCCcCCccCCHHHHH
Confidence 56789999999999999999999998642 23333 33 467799999999999877432 3333444
Q ss_pred hhhh----cCCCCCcEEEEecCCC-----------------------------------------HHHHHHHHHHHHHCC
Q 020423 116 RFLA----FSPEQHPIVLQIGGSN-----------------------------------------LDNLAKATELANAYN 150 (326)
Q Consensus 116 ~~~~----~~~~~~piivQL~g~~-----------------------------------------~~~f~~aA~~a~~aG 150 (326)
.|.+ +|+++.++++||+|.. .++|++||++++++|
T Consensus 90 ~~~~~~~~vh~~g~~i~~Ql~h~Gr~~~~~~~~~~~~~ps~~~~~~~~~~~~~p~~~t~~ei~~~i~~f~~aA~~a~~aG 169 (690)
T 3k30_A 90 ALKRIADAIHEGGGLAGIELAHNGMNAPNQLSRETPLGPGHLPVAPDTIAPIQARAMTKQDIDDLRRWHRNAVRRSIEAG 169 (690)
T ss_dssp HHHHHHHHHHHTTCEEEEEEECCGGGCCCTTTCCCCEESSSCBSCSSCCCSCBCEECCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCCEEEEEccCCcccccccccCCCccCCCCCcccccccCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcC
Confidence 4432 6889999999998510 389999999999999
Q ss_pred CCEEEecCCCCC---------CcccCCCCccccccCCHHHHHHHHHHHHhcC--CCcEEEEeccCCC--CCccHHHHHHH
Q 020423 151 YDEINLNCGCPS---------PKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVD--DHDSYNQLCDF 217 (326)
Q Consensus 151 ~d~Iein~g~P~---------~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~--~~pv~vK~r~g~~--~~~~~~e~~~~ 217 (326)
||+||||++|++ ..|+|+|+|||+++||+||+.|++++||+++ ++||.+|++.... ...+.++..+
T Consensus 170 fDgVeih~a~gy~L~~qFlsp~~N~R~D~yGGs~enR~r~~~ei~~avr~~~g~~~~v~~r~s~~~~~~~g~~~~~~~~- 248 (690)
T 3k30_A 170 YDIVYVYGAHGYSGVHHFLSKRYNQRTDEYGGSLENRMRLLRELLEDTLDECAGRAAVACRITVEEEIDGGITREDIEG- 248 (690)
T ss_dssp CSEEEEEECTTCSHHHHHHCTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHHHTTSSEEEEEEECCCCSTTSCCHHHHHH-
T ss_pred CCEEEEcccccchHHHHhCCCccCCCccccCCCHHHHHHHHHHHHHHHHHHhCCCceEEEEECccccCCCCCCHHHHHH-
Confidence 999999988654 1368999999999999999999999999998 5677777766311 1223556555
Q ss_pred HHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCC-ccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhC-CChhhh
Q 020423 218 IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPP-LKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKG-AHHVMV 295 (326)
Q Consensus 218 ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~-~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~G-aD~V~i 295 (326)
+++.+++ |+|+++||++.... ...+. ...++ ..++.+.++++. +++|||++|+|+++++++++++.| ||+|++
T Consensus 249 ~~~~l~~-~~d~~~v~~~~~~~-~~~~~--~~~~~~~~~~~~~~i~~~-~~~pvi~~G~i~~~~~a~~~l~~g~~d~v~~ 323 (690)
T 3k30_A 249 VLRELGE-LPDLWDFAMGSWEG-DSVTS--RFAPEGRQEEFVAGLKKL-TTKPVVGVGRFTSPDAMVRQIKAGILDLIGA 323 (690)
T ss_dssp HHHHHTT-SSSEEEEECSCHHH-HTCCT--TTCCTTTTHHHHTTSGGG-CSSCEEECSCCCCHHHHHHHHHTTSCSEEEE
T ss_pred HHHHHHh-hcCEEEEecccccc-cCCCC--ccCCccccHHHHHHHHHH-cCCeEEEeCCCCCHHHHHHHHHCCCcceEEE
Confidence 5667776 89999999864210 00000 01111 124555555444 599999999999999999999976 999999
Q ss_pred hHHHHhCCchhHHhHHHhhhCCCCCC
Q 020423 296 GRAAYQNPWYTLGHVDTAIYGAPSSG 321 (326)
Q Consensus 296 GRall~dP~l~~~~i~~~~~~~~~~~ 321 (326)
||++++||| |++++.+.......+|
T Consensus 324 gR~~~~~P~-~~~~~~~g~~~~i~~c 348 (690)
T 3k30_A 324 ARPSIADPF-LPNKIRDGRLNLIREC 348 (690)
T ss_dssp SHHHHHCTT-HHHHHHTTCGGGCCCC
T ss_pred cHHhHhCcc-HHHHHHcCCccccccc
Confidence 999999999 5677766544444444
|
| >4a3u_A NCR, NADH\:flavin oxidoreductase/NADH oxidase; HET: FMN; 1.70A {Zymomonas mobilis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-40 Score=316.31 Aligned_cols=247 Identities=14% Similarity=0.078 Sum_probs=184.1
Q ss_pred cccCCccccccCeecCCcEEEccCCC--------CChHHHHHHHHHcCCCcEEEecceeecccc---------ccccchh
Q 020423 53 IILHTKAEMVARQYLPPWFSVAPMMD--------WTDNHYRTLARLISKHAWLYTEMLAAETII---------YQQGNLD 115 (326)
Q Consensus 53 ~~~l~~p~~ig~~~l~nrivlAPM~~--------~s~~~~r~~~~~~Gg~gli~te~~~~~~~~---------~~~~~~~ 115 (326)
|++||+|++||+++|||||+||||+. .|+.++.+|.++++ .|||+||.+.+++.. +++++++
T Consensus 1 Mp~LF~P~~ig~~~lkNRiv~apm~~~~a~~dg~~t~~~~~~y~~rA~-gGliite~~~V~~~g~~~~~~~gi~~d~~i~ 79 (358)
T 4a3u_A 1 MPSLFDPIRFGAFTAKNRIWMAPLTRGRATRDHVPTEIMAEYYAQRAS-AGLIISEATGISQEGLGWPYAPGIWSDAQVE 79 (358)
T ss_dssp -CCTTSCEEETTEEESCSEEECCCCCCCSCTTCCCCHHHHHHHHHTTT-SSSEEEEEEESSTTTCCSTTCCBCSSHHHHH
T ss_pred CCCCCCCceECCEEECCceEEcccCCCccCCCCCCCHHHHHHHHHHcC-CCEEEEeeeEECccccCCCCCcccCchHhHH
Confidence 46899999999999999999999974 47788888877655 499999998876432 3333444
Q ss_pred hhhh----cCCCCCcEEEEecCCC-----------------------------------------------HHHHHHHHH
Q 020423 116 RFLA----FSPEQHPIVLQIGGSN-----------------------------------------------LDNLAKATE 144 (326)
Q Consensus 116 ~~~~----~~~~~~piivQL~g~~-----------------------------------------------~~~f~~aA~ 144 (326)
.|.+ +|+.+.++++||+|.. .++|++||+
T Consensus 80 ~~k~l~~avh~~G~~i~~QL~H~Gr~~~~~~~g~~~~apS~~~~~~~~~~~~~~~~~~~pr~mt~~eI~~ii~~F~~AA~ 159 (358)
T 4a3u_A 80 AWLPITQAVHDAGGLIFAQLWHMGRMVPSNVSGMQPVAPSASQAPGLGHTYDGKKPYDVARALRLDEIPRLLDDYEKAAR 159 (358)
T ss_dssp HHHHHHHHHHHTTCCEEEEEECCGGGCCHHHHSSCCEESSCEECSSEEECSSSEEECCEEEECCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCceeeccccccccccccccccCCCCCcccccCCcccccCCCCCCccCccCCHHHHHHHHHHHHHHHH
Confidence 4433 7899999999997521 368999999
Q ss_pred HHHHCCCCEEEecCC---------CCCCcccCCCCccccccCCHHHHHHHHHHHHhcCC-CcEEEEeccCCC-----CCc
Q 020423 145 LANAYNYDEINLNCG---------CPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTN-VPVSVKCRIGVD-----DHD 209 (326)
Q Consensus 145 ~a~~aG~d~Iein~g---------~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~-~pv~vK~r~g~~-----~~~ 209 (326)
+|+++|||+||||++ +|. .|+|+|+||||++||.||+.||+++||++++ .++.+|++.... +..
T Consensus 160 rA~~AGFDgVEIH~ahGYLl~QFLSp~-tN~RtDeYGGS~eNR~Rf~~Eii~avr~~vg~~~v~vRls~~~~~~g~~~~~ 238 (358)
T 4a3u_A 160 HALKAGFDGVQIHAANGYLIDEFIRDS-TNHRHDEYGGAVENRIRLLKDVTERVIATIGKERTAVRLSPNGEIQGTVDSH 238 (358)
T ss_dssp HHHHTTCSEEEEEECTTSHHHHHHSTT-TCCCCSTTSSSHHHHTHHHHHHHHHHHHHHCGGGEEEEECCSSCBTTBCCSS
T ss_pred HHHHcCCCeEeecccCCCcHHhceecc-cCCeeCCCCCCHHHHHHHHHHHHHHHHHHcCccceEEEeccCcccCCCcccc
Confidence 999999999999987 687 4699999999999999999999999999984 457888876311 111
Q ss_pred cHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhC
Q 020423 210 SYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKG 289 (326)
Q Consensus 210 ~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~G 289 (326)
+.++... +++.+++.|+++++++.+... +..+. ...+. +..++++ ..+.||+ +||+.+++.++++++.|
T Consensus 239 ~~~~~~~-~~~~~~~~~~~~i~~~~~~~~--~~~~~--~~~~~----~a~~ik~-~~~~~v~-~~g~~~~~~ae~~l~~G 307 (358)
T 4a3u_A 239 PEQVFIP-AAKMLSDLDIAFLGMREGAVD--GTFGK--TDQPK----LSPEIRK-VFKPPLV-LNQDYTFETAQAALDSG 307 (358)
T ss_dssp THHHHHH-HHHHHHHHTCSEEEEECCBTT--CSSSB--CSSCC----CHHHHHH-HCCSCEE-EESSCCHHHHHHHHHHT
T ss_pred hHHHHHH-HHHhhhccCcccccccccccc--Ccccc--cccHH----HHHHHHH-hcCCcEE-EeCCCCHHHHHHHHHcC
Confidence 2333333 456677899999999865421 11110 01111 1223333 3366665 57788999999999988
Q ss_pred -CChhhhhHHHHhCCchhHHhHHHh
Q 020423 290 -AHHVMVGRAAYQNPWYTLGHVDTA 313 (326)
Q Consensus 290 -aD~V~iGRall~dP~l~~~~i~~~ 313 (326)
||+|++||++|+||+ |++++++.
T Consensus 308 ~aD~V~~gR~~ladPd-lp~k~~~g 331 (358)
T 4a3u_A 308 VADAISFGRPFIGNPD-LPRRFFEK 331 (358)
T ss_dssp SCSEEEESHHHHHCTT-HHHHHHHT
T ss_pred CceEeHhhHHHHhChh-HHHHHHhC
Confidence 999999999999999 67777764
|
| >3aty_A Tcoye, prostaglandin F2A synthase; alpha/beta barrel, oxidoreductase, flavin mononucleotide; HET: FMN; 1.70A {Trypanosoma cruzi} PDB: 3atz_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-39 Score=308.10 Aligned_cols=242 Identities=11% Similarity=0.064 Sum_probs=190.1
Q ss_pred cccCCccccccCeecCCcEEEccCCC---------CC-hHHHHHHHHHcCCCcEEEecceeeccc---------cccccc
Q 020423 53 IILHTKAEMVARQYLPPWFSVAPMMD---------WT-DNHYRTLARLISKHAWLYTEMLAAETI---------IYQQGN 113 (326)
Q Consensus 53 ~~~l~~p~~ig~~~l~nrivlAPM~~---------~s-~~~~r~~~~~~Gg~gli~te~~~~~~~---------~~~~~~ 113 (326)
+..||+|++||+++|||||+||||++ .| +.++.||.+++| +|||+||.+.+++. ++++++
T Consensus 4 ~~~Lf~P~~ig~~~l~NRiv~apm~~~~a~~~~g~pt~~~~~~yY~~rA~-~GLIite~~~v~~~g~~~~~~~gi~~d~~ 82 (379)
T 3aty_A 4 FPELLRPLKLGRYTLRNRIIMAPLTRCQATEDDHVPRTESMLKYYEDRAS-AGLIIAEATMVQPNYTGFLTEPGIYSDAQ 82 (379)
T ss_dssp STTTTSCEEETTEEESCSEEECCCCCCCBCTTTCCBCHHHHHHHHHTTTT-SSEEEEEEEESSTTCCSSSSCCBSSSHHH
T ss_pred chhcCCCeeECCEEEcCccEECCcCCCcccCCCCccCHHHHHHHHHHHhC-CCeEEECceecccccccCCCCCCcCCHHH
Confidence 56899999999999999999999974 24 777888877664 99999999887743 233444
Q ss_pred hhhhhh----cCCCCCcEEEEecCC-------------------------------------------------------
Q 020423 114 LDRFLA----FSPEQHPIVLQIGGS------------------------------------------------------- 134 (326)
Q Consensus 114 ~~~~~~----~~~~~~piivQL~g~------------------------------------------------------- 134 (326)
+..|.+ +|+.+.++++||+|.
T Consensus 83 i~~~k~~~~avh~~G~~i~~QL~H~Gr~~~~~~~~~~~~~g~~~~~~~~~apS~i~~~~~~~~~~~~~~g~~~~~~~pr~ 162 (379)
T 3aty_A 83 IEEWRKIVDAVHKKGGLIFLQLIHAGRAGIPEKILQQSKSDQDPLAGRLLAASAIPIKDHRIPAYFAASGEKETYGVPEE 162 (379)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEECCGGGSCHHHHTTSCCCSSSTTTTCCEESSSCCCCSCCBCTTTSTTSSCBCCCCCEE
T ss_pred HHHHHHHHHHHHhcCCEEEEEeccCCcccCcccccccccCCCCCccCcccCCCCCccccccccccccccccccCCCCCcc
Confidence 444433 688888899998530
Q ss_pred ---------CHHHHHHHHHHHH-HCCCCEEEecCCC---------CCCcccC-CCCccc-cccCCHHHHHHHHHHHHhcC
Q 020423 135 ---------NLDNLAKATELAN-AYNYDEINLNCGC---------PSPKVAG-HGCFGV-SLMLDPKFVGEAMSVIAANT 193 (326)
Q Consensus 135 ---------~~~~f~~aA~~a~-~aG~d~Iein~g~---------P~~~~~r-~d~yGg-sl~~r~~~l~eiv~avr~~~ 193 (326)
.+++|+++|++++ ++|||+||||++| |.. |.| +|+||| +++||++|+.|++++||+++
T Consensus 163 lt~~eI~~~~i~~f~~AA~~a~~~aGfDgVEih~a~GYLl~QFlsp~~-N~R~~D~yGG~slenR~r~~~eiv~aVr~av 241 (379)
T 3aty_A 163 LTDDEVRDGIIPLFVEGAKNAIFKAGFDGVEIHGANGYLLDAFFRESS-NKRQSGPYAGTTIDTRCQLIYDVTKSVCDAV 241 (379)
T ss_dssp CCHHHHHHTHHHHHHHHHHHHHHTSCCSEEEEEECTTSHHHHHHSTTT-CCCCSSTTCTTSHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHhHHHHHHHHHHHHHHHHhcCCCEEEEcCcCchHHhhccCCCC-CccccCCCCccChhhhHHHHHHHHHHHHHhc
Confidence 1256889999999 9999999999986 774 688 999999 99999999999999999998
Q ss_pred C-CcEEEEeccCC-----CCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCC
Q 020423 194 N-VPVSVKCRIGV-----DDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPD 267 (326)
Q Consensus 194 ~-~pv~vK~r~g~-----~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~ 267 (326)
+ .||.+|++... .+..+.++..+ +++.+++.|+|+|+++++... . +.. + .+ ++++++. .+
T Consensus 242 g~~~v~vRis~~~~~~~~~~~~~~~~~~~-la~~l~~~Gvd~i~v~~~~~~--~------~~~-~--~~-~~~ir~~-~~ 307 (379)
T 3aty_A 242 GSDRVGLRISPLNGVHGMIDSNPEALTKH-LCKKIEPLSLAYLHYLRGDMV--N------QQI-G--DV-VAWVRGS-YS 307 (379)
T ss_dssp CGGGEEEEECTTCCGGGCCCSCHHHHHHH-HHHHHGGGCCSEEEEECSCTT--S------CCC-C--CH-HHHHHTT-CC
T ss_pred CCCeEEEEECcccccccCCCCCCHHHHHH-HHHHHHHhCCCEEEEcCCCcC--C------CCc-c--HH-HHHHHHH-CC
Confidence 5 48999999842 12234555555 567788999999999986421 1 011 1 24 5666655 49
Q ss_pred ceEEEeCCCCCHHHHHHHHHhC-CChhhhhHHHHhCCchhHHhHHH
Q 020423 268 LTFTLNGGINTVDEVNAALRKG-AHHVMVGRAAYQNPWYTLGHVDT 312 (326)
Q Consensus 268 iPVIa~GgI~s~~da~~~l~~G-aD~V~iGRall~dP~l~~~~i~~ 312 (326)
+|||++||| ++++++++++.| ||+|++||++++||+| .+++.+
T Consensus 308 iPvi~~G~i-t~~~a~~~l~~g~aD~V~igR~~l~~P~l-~~k~~~ 351 (379)
T 3aty_A 308 GVKISNLRY-DFEEADQQIREGKVDAVAFGAKFIANPDL-VERAQQ 351 (379)
T ss_dssp SCEEEESSC-CHHHHHHHHHTTSCSEEEESHHHHHCTTH-HHHHHH
T ss_pred CcEEEECCC-CHHHHHHHHHcCCCeEEEecHHHHhCcHH-HHHHHc
Confidence 999999999 999999999977 9999999999999995 555554
|
| >4gbu_A NADPH dehydrogenase 1; alpha/beta barrel, enenone reductase, alkene reductase, NADP oxidoreductase, carvone, enenatioselectivity; HET: 0WV 1PE FMN; 1.18A {Saccharomyces pastorianus} PDB: 4ge8_A* 1oya_A* 1oyb_A* 1oyc_A* 3tx9_A* 3rnd_A* 1k02_A* 1k03_A* 1bwk_A* 1bwl_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-39 Score=313.50 Aligned_cols=252 Identities=10% Similarity=0.039 Sum_probs=177.3
Q ss_pred ccCCccccccCeecCCcEEEccCCCC--------C--hHHHHHH-HHHcCCCcEEEecceeecccc---------ccccc
Q 020423 54 ILHTKAEMVARQYLPPWFSVAPMMDW--------T--DNHYRTL-ARLISKHAWLYTEMLAAETII---------YQQGN 113 (326)
Q Consensus 54 ~~l~~p~~ig~~~l~nrivlAPM~~~--------s--~~~~r~~-~~~~Gg~gli~te~~~~~~~~---------~~~~~ 113 (326)
++||+|++||+++|||||+||||++. + +.+++|| .|+.||+|||+||.+.+++.. +++++
T Consensus 15 s~LF~P~~ig~l~lkNRiv~aPm~~~~a~~~g~v~~~d~~~~yy~~rA~GG~GLIite~~~V~~~g~~~~~~~gi~~d~~ 94 (400)
T 4gbu_A 15 TNLFKPIKIGNNELLHRAVIPPLTRMRALHPGNIPNRDWAVEYYTQRAQRPGTMIITEGAFISPQAGGYDNAPGVWSEEQ 94 (400)
T ss_dssp SGGGSCEEETTEEESSSEEBCCCCCCCCBTTTTBCCTTTHHHHHHHHTCSTTCEEECSCEESSGGGCCCTTSCBSSSHHH
T ss_pred CCCCCCeeECCEEEcCcCEeCCccCCcCCCCCCCCCHHHHHHHHHHHHcCCeEEEEEcCeEECccccCCCCCCccCCHHH
Confidence 57999999999999999999999752 2 4567777 456789999999998887532 33334
Q ss_pred hhhhhh----cCCCCCcEEEEecCCC--------------------------------------------------HHHH
Q 020423 114 LDRFLA----FSPEQHPIVLQIGGSN--------------------------------------------------LDNL 139 (326)
Q Consensus 114 ~~~~~~----~~~~~~piivQL~g~~--------------------------------------------------~~~f 139 (326)
+..|.+ +|+++.++++||+|.. .++|
T Consensus 95 i~~~k~l~davH~~G~~i~~QL~H~Gr~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~pr~mt~~eI~~ii~~F 174 (400)
T 4gbu_A 95 MVEWTKIFNAIHEKKSFVWVQLAVLGWAAFPDNLARDGLRYDSASDNVFMDAEQEAKAKKANNPQHSLTKDEIKQYIKEY 174 (400)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEECCGGGSCHHHHHHTTCCCEESCSSCCSCHHHHHHHHHTTCCCEECCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCceEEeeeecCcccCccccccCCCcccCccccccCCCCcccccccCCCCCccCCHHHHHHHHHHH
Confidence 444432 7899999999997521 2589
Q ss_pred HHHHHHHHHCCCCEEEecCC---------CCCCcccCCCCccccccCCHHHHHHHHHHHHhcC-CCcEEEEeccCC--CC
Q 020423 140 AKATELANAYNYDEINLNCG---------CPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCRIGV--DD 207 (326)
Q Consensus 140 ~~aA~~a~~aG~d~Iein~g---------~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~-~~pv~vK~r~g~--~~ 207 (326)
++||++|++||||+||||.+ +|. .|+|+|+||||++||.||+.||+++||+++ +.||.+|++... ++
T Consensus 175 ~~AA~rA~~AGFDgVEIH~AhGYLl~QFLSp~-tN~RtDeYGGS~ENR~Rf~lEVi~aVr~~vg~d~vgvRlS~~~~~~~ 253 (400)
T 4gbu_A 175 VQAAKNSIAAGADGVEIHSANGYLLNQFLDPH-SNTRTDEYGGSIENRARFTLEVVDALVEAIGHEKVGLRLSPYGVFNS 253 (400)
T ss_dssp HHHHHHHHHTTCSEEEEECCTTSHHHHHHCTT-TCCCCSTTSSSHHHHTHHHHHHHHHHHHHHCGGGEEEEECTTCCTTT
T ss_pred HHHHHHHHhcCcCeeeecccccchHHheecCc-CCCCccccCCcHHHHHHHHHHHHHHHHHHcCCCcEEEEeccccccCC
Confidence 99999999999999999987 677 469999999999999999999999999998 358999887631 11
Q ss_pred ------CccHHHHHHHHHHHhhh---C--CccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCC
Q 020423 208 ------HDSYNQLCDFIYKVSSL---S--PTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 276 (326)
Q Consensus 208 ------~~~~~e~~~~ia~~le~---~--Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI 276 (326)
....++..+ ++..++. . .++++++................. ..... +.+++..++|||++||+
T Consensus 254 ~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~----~~ir~~~~~pvi~~G~~ 327 (400)
T 4gbu_A 254 MSGGAETGIVAQYAY-VAGELEKRAKAGKRLAFVHLVEPRVTNPFLTEGEGEY-EGGSN----DFVYSIWKGPVIRAGNF 327 (400)
T ss_dssp CCGGGSTTHHHHHHH-HHHHHHHHHHTTCCCSEEEEECTTCSSTTSCTTTTCC-CSCCS----THHHHHCCSCEEEESSC
T ss_pred CCccchhhhHHHHHH-HHHHHHHhhccCccccceeeecccCCCcccccccchh-hhHHH----HHHHHHhCCCEEEeCCC
Confidence 112333333 2222322 2 356777654322111000000000 00011 22333458999999999
Q ss_pred CCHHHHHHHHH-hCCChhhhhHHHHhCCchhHHhHHHh
Q 020423 277 NTVDEVNAALR-KGAHHVMVGRAAYQNPWYTLGHVDTA 313 (326)
Q Consensus 277 ~s~~da~~~l~-~GaD~V~iGRall~dP~l~~~~i~~~ 313 (326)
.+..++.+.+. .+||+|.+||++|+||+ |++++++.
T Consensus 328 ~~~~~~~~~~~~~~aDlV~~gR~~iadPd-l~~k~~~G 364 (400)
T 4gbu_A 328 ALHPEVVREEVKDKRTLIGYGRFFISNPD-LVDRLEKG 364 (400)
T ss_dssp TTCHHHHHHHTTSTTEEEECCHHHHHCTT-HHHHHHHT
T ss_pred CChHHHHHHHHcCCCeEhHHHHHHHHCcH-HHHHHHcC
Confidence 87766665554 67999999999999999 67777663
|
| >3tjl_A NADPH dehydrogenase; OLD yellow enzyme, flavin mononucleotide, TIM barrel, NADPH oxidoreductase, enone reductase; HET: FMN; 1.50A {Scheffersomyces stipitis cbs 6054} PDB: 3upw_A* 4df2_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-40 Score=314.01 Aligned_cols=249 Identities=10% Similarity=0.022 Sum_probs=184.2
Q ss_pred ccCCccccccCeecCCcEEEccCCC--------CChHHHHHHHH-HcCCCcEEEecceeecccc----------ccccch
Q 020423 54 ILHTKAEMVARQYLPPWFSVAPMMD--------WTDNHYRTLAR-LISKHAWLYTEMLAAETII----------YQQGNL 114 (326)
Q Consensus 54 ~~l~~p~~ig~~~l~nrivlAPM~~--------~s~~~~r~~~~-~~Gg~gli~te~~~~~~~~----------~~~~~~ 114 (326)
..||+|++||+++|||||+||||++ .|+.++.||.+ +.||+|||+||.+.+++.. ++++++
T Consensus 12 ~~Lf~P~~ig~~~LkNRiv~aPm~~~~a~~~g~pt~~~~~yY~~rA~gG~GLIIte~~~V~~~g~~~~~~~~gi~~d~~i 91 (407)
T 3tjl_A 12 SEAFQSIKVGNNTLQTKIVYPPTTRFRALEDHTPSDLQLQYYGDRSTFPGTLLITEATFVSPQASGYEGAAPGIWTDKHA 91 (407)
T ss_dssp SGGGSCEEETTEEESCSEEBCCCCCCBSCTTSCCBHHHHHHHHHTCCSTTCEEEEEEEESSGGGCCCSSBCCBCSSHHHH
T ss_pred ccCCCCeeECCEEecCCcEECCCCCCccCCCCCCCHHHHHHHHHHHcCCceEEEEcceEECCccCCCCCcCcccCCHHHH
Confidence 5799999999999999999999975 36778888855 5588999999998877532 222333
Q ss_pred hhhhh----cCCCCCcEEEEecCCC-------------------------------------------------HHH-HH
Q 020423 115 DRFLA----FSPEQHPIVLQIGGSN-------------------------------------------------LDN-LA 140 (326)
Q Consensus 115 ~~~~~----~~~~~~piivQL~g~~-------------------------------------------------~~~-f~ 140 (326)
..|.+ +|+.+.++++||+|.. .++ |+
T Consensus 92 ~~~k~l~~avH~~G~~i~~QL~H~Gr~~~~~~~~~~g~~~vapS~i~~~~~~~~~~~~~~~~pr~lt~~eI~~ii~~~~~ 171 (407)
T 3tjl_A 92 KAWKVITDKVHANGSFVSTQLIFLGRVADPAVMKTRGLNPVSASATYESDAAKEAAEAVGNPVRALTTQEVKDLVYEAYT 171 (407)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEECCGGGSCHHHHHHTTCCCEESSSCCSSHHHHHHHHHTTCCCEECCHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHhcCCEEEEEeccCCCccchhhcccCCCcccCCCCcccccccccccccCCCCCCcCCHHHHHHHHHHHHH
Confidence 34432 7899999999997521 146 99
Q ss_pred HHHHHHHHCCCCEEEecCCC---------CCCcccCCCCccccccCCHHHHHHHHHHHHhcCC-CcEEEEeccCCC----
Q 020423 141 KATELANAYNYDEINLNCGC---------PSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTN-VPVSVKCRIGVD---- 206 (326)
Q Consensus 141 ~aA~~a~~aG~d~Iein~g~---------P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~-~pv~vK~r~g~~---- 206 (326)
+||++++++|||+||||++| |.. |+|+|+|||+++||++|+.||+++||++++ .+|.+|++....
T Consensus 172 ~aa~~a~~aGfdgveih~~~GYLl~QFLsp~~-N~r~D~YGGs~enr~r~~~ei~~av~~~~~~~~v~~r~~~~~~~~g~ 250 (407)
T 3tjl_A 172 NAAQKAMDAGFDYIELHAAHGYLLDQFLQPCT-NQRTDEYGGSIENRARLILELIDHLSTIVGADKIGIRISPWATFQNM 250 (407)
T ss_dssp HHHHHHHHTTCSEEEEECCTTSHHHHHHSTTT-CCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGGGEEEEECTTCCGGGC
T ss_pred HHHHHHHHhCCCeEEECCccchHHHHhcCccc-cccCCcCCCChhhChHHHHHHHHHHHHHhCCCeEEEEECcccccCCC
Confidence 99999999999999999998 874 699999999999999999999999999985 489999987211
Q ss_pred -CC-c---cHHHHHHHHHHHh---hhCC--ccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCC
Q 020423 207 -DH-D---SYNQLCDFIYKVS---SLSP--TRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 276 (326)
Q Consensus 207 -~~-~---~~~e~~~~ia~~l---e~~G--vd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI 276 (326)
+. + ..++.. .+++.+ ++.| +|+|+||.+........+. ...+..+..+++.. ++|||++|||
T Consensus 251 ~~~~d~~~~~~~~~-~l~~~L~~~~~~G~~l~ylhv~~~~~~~~~~~~~------~~~~~~~~~ir~~~-~~PvI~~Ggi 322 (407)
T 3tjl_A 251 KAHKDTVHPLTTFS-YLVHELQQRADKGQGIAYISVVEPRVSGNVDVSE------EDQAGDNEFVSKIW-KGVILKAGNY 322 (407)
T ss_dssp CGGGSSSCHHHHHH-HHHHHHHHHHHTTCCCSEEEEECTTEETTEECCG------GGCCCCSHHHHHHC-CSEEEEESCG
T ss_pred cccccccccHHHHH-HHHHHHHhHhhcCCceeEEEEEccccCCCCcCCc------cchhHHHHHHHHHh-CCCEEecCCC
Confidence 11 1 133333 355666 6789 9999998432110000000 00012223344444 7899999999
Q ss_pred CCHHHHHHHHHh----CCChhhhhHHHHhCCchhHHhHHH
Q 020423 277 NTVDEVNAALRK----GAHHVMVGRAAYQNPWYTLGHVDT 312 (326)
Q Consensus 277 ~s~~da~~~l~~----GaD~V~iGRall~dP~l~~~~i~~ 312 (326)
.+.+++.++++. +||+|++||+++.|||| ..++..
T Consensus 323 ~~~~dA~~~i~~~~~g~aDlVa~GR~~iaNPdL-~~ri~~ 361 (407)
T 3tjl_A 323 SYDAPEFKTLKEDIADKRTLVGFSRYFTSNPNL-VWKLRD 361 (407)
T ss_dssp GGGTTTTHHHHHHHTTSSEEEECSHHHHHCTTH-HHHHHH
T ss_pred CCHHHHHHHHHhhccCCCeEEEeChhhhhCchH-HHHHHc
Confidence 999987777764 49999999999999995 455544
|
| >2e6f_A Dihydroorotate dehydrogenase; chagas disease, pyrimidine biosynthesis, fumarate reductase, energy metabolism, redox homeostasis, flavoprotein; HET: FMN OXC; 1.26A {Trypanosoma cruzi} PDB: 2e6a_A* 2e6d_A* 2e68_A* 2djl_A* 2djx_A* 3c3n_A* 2b4g_A* 3c61_A* 3mhu_A* 3mjy_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=4.8e-31 Score=246.79 Aligned_cols=238 Identities=16% Similarity=0.172 Sum_probs=178.0
Q ss_pred cccccCeecCCcEEEccCCCCChHHHHHHHHHcCCCcEEEecceeecccc-------------------ccccchhhhh-
Q 020423 59 AEMVARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETII-------------------YQQGNLDRFL- 118 (326)
Q Consensus 59 p~~ig~~~l~nrivlAPM~~~s~~~~r~~~~~~Gg~gli~te~~~~~~~~-------------------~~~~~~~~~~- 118 (326)
|.++++++++||+++|++.--.+.++...+.+ +|+|+++++++++++.. ..+...+.++
T Consensus 5 ~~~i~g~~l~nPi~~Aag~~~~~~~~~~~~~~-~G~g~v~~~~v~~~~~~gn~~pr~~~~~~~~in~~g~~~~g~~~~~~ 83 (314)
T 2e6f_A 5 KLNLLDHVFANPFMNAAGVLCSTEEDLRCMTA-SSSGALVSKSCTSAPRDGNPEPRYMAFPLGSINSMGLPNLGFDFYLK 83 (314)
T ss_dssp CEEETTEEESSSEEECTTSSCSSHHHHHHHHH-SSCSCEECCCBCSSCBCCSCSCCEEEETTEEEECCCCCBSCHHHHHH
T ss_pred ceEECCEecCCCcEECCCCCCCCHHHHHHHHH-CCCCEEEeCccCCcccCCCCCCcEEecccceeecCCCCCcCHHHHHH
Confidence 68899999999999999762234444444444 56999999999887632 1111122221
Q ss_pred ---hc-CCCCCcEEEEecCCCHHHHHHHHHHHHHCCCC---EEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHh
Q 020423 119 ---AF-SPEQHPIVLQIGGSNLDNLAKATELANAYNYD---EINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAA 191 (326)
Q Consensus 119 ---~~-~~~~~piivQL~g~~~~~f~~aA~~a~~aG~d---~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~ 191 (326)
.. ...+.|+++||.+.++++|.++++++.++|+| +||||++||+. .+.+.|| .+++.+.++++++|+
T Consensus 84 ~~~~~~~~~~~p~~~~i~g~~~~~~~~~a~~~~~~g~d~~~~iein~~~P~~--~g~~~~g----~~~~~~~~ii~~vr~ 157 (314)
T 2e6f_A 84 YASDLHDYSKKPLFLSISGLSVEENVAMVRRLAPVAQEKGVLLELNLSCPNV--PGKPQVA----YDFEAMRTYLQQVSL 157 (314)
T ss_dssp HHHHTCCTTTCCEEEEECCSSHHHHHHHHHHHHHHHHHHCCEEEEECCCCCS--TTCCCGG----GSHHHHHHHHHHHHH
T ss_pred HHHHHhhcCCCcEEEEeCCCCHHHHHHHHHHHHHhCCCcCceEEEEcCCCCC--CCchhhc----CCHHHHHHHHHHHHH
Confidence 11 22468999999999999999999999999999 99999999995 4556676 567789999999999
Q ss_pred cCCCcEEEEeccCCCCCccHHHHHHHHHHHhhhCC-ccEEEEecCCcc------------------cCCCCcCCcCCCCC
Q 020423 192 NTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSP-TRHFIIHSRKAL------------------LNGISPAENRTIPP 252 (326)
Q Consensus 192 ~~~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~G-vd~I~v~~~~~~------------------~~g~~~~~~~~~~~ 252 (326)
.+++|+.+|++.+++ .+++.+ +++.++++| +|+|++|+++.. .+|.++ ....+
T Consensus 158 ~~~~Pv~vK~~~~~~----~~~~~~-~a~~~~~aG~~d~i~v~~~~~~~~~i~~~~~~~~~~~~~~~gG~sg---~~~~p 229 (314)
T 2e6f_A 158 AYGLPFGVKMPPYFD----IAHFDT-AAAVLNEFPLVKFVTCVNSVGNGLVIDAESESVVIKPKQGFGGLGG---KYILP 229 (314)
T ss_dssp HHCSCEEEEECCCCC----HHHHHH-HHHHHHTCTTEEEEEECCCEEEEECEETTTTEESCCGGGGEEEEES---GGGHH
T ss_pred hcCCCEEEEECCCCC----HHHHHH-HHHHHHhcCCceEEEEeCCCCccccccCCCCCcccccCcCCCccCc---ccccH
Confidence 989999999998753 234333 456677899 999999986510 001111 11122
Q ss_pred ccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHh-CCchhHHhHHH
Q 020423 253 LKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ-NPWYTLGHVDT 312 (326)
Q Consensus 253 ~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~-dP~l~~~~i~~ 312 (326)
..++.++++++..+++|||++|||+|++|+.++++.|||+|++||+++. +|++ .+++.+
T Consensus 230 ~~~~~i~~v~~~~~~ipvi~~GGI~~~~da~~~l~~GAd~V~ig~~~l~~~p~~-~~~i~~ 289 (314)
T 2e6f_A 230 TALANVNAFYRRCPDKLVFGCGGVYSGEDAFLHILAGASMVQVGTALQEEGPGI-FTRLED 289 (314)
T ss_dssp HHHHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHHHTCSSEEECHHHHHHCTTH-HHHHHH
T ss_pred HHHHHHHHHHHhcCCCCEEEECCCCCHHHHHHHHHcCCCEEEEchhhHhcCcHH-HHHHHH
Confidence 3467788877665589999999999999999999999999999999996 9995 444444
|
| >1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=5.7e-31 Score=245.96 Aligned_cols=238 Identities=16% Similarity=0.145 Sum_probs=177.4
Q ss_pred cccccCeecCCcEEEccCCCCChHHHHHHHHHcCCCcEEEecceeeccccccc-------------------cchhhhh-
Q 020423 59 AEMVARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQ-------------------GNLDRFL- 118 (326)
Q Consensus 59 p~~ig~~~l~nrivlAPM~~~s~~~~r~~~~~~Gg~gli~te~~~~~~~~~~~-------------------~~~~~~~- 118 (326)
|.+|++++++||+++|+...-.+.+++..+.. +|+|+++|++++.++...+. ...+.++
T Consensus 3 ~~~i~g~~l~npv~~Aag~~~~~~~~~~~~~~-~G~g~i~~~~v~~~~~~gn~~pr~~~~~~~~in~~g~~~~g~~~~~~ 81 (311)
T 1jub_A 3 NTTFANAKFANPFMNASGVHCMTIEDLEELKA-SQAGAYITKSSTLEKREGNPLPRYVDLELGSINSMGLPNLGFDYYLD 81 (311)
T ss_dssp CEEETTEEESSSEEECTTSSCSSHHHHHHHHH-SSCSCCBCCCBCSSCBCCSCSCCEEEETTEEEECCCCCBSCHHHHHH
T ss_pred ceEECCEEcCCCcEECCCCCCCCHHHHHHHHH-CCCCEEEeCccCCcccCCCCCCcEEecccceeecCCCCCccHHHHHH
Confidence 57899999999999998541236666655554 55999999999887632111 0011111
Q ss_pred ---hcC-CC--CCcEEEEecCCCHHHHHHHHHHHHHCCCC-EEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHh
Q 020423 119 ---AFS-PE--QHPIVLQIGGSNLDNLAKATELANAYNYD-EINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAA 191 (326)
Q Consensus 119 ---~~~-~~--~~piivQL~g~~~~~f~~aA~~a~~aG~d-~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~ 191 (326)
... .. +.|+++||.+.++++|.++++++.++|+| +||||++||+. .+.+.|| .+++.+.++++++|+
T Consensus 82 ~~~~~~~~~~~~~p~~~~i~g~~~~~~~~~a~~~~~~g~d~~iein~~~P~~--~g~~~~g----~~~e~~~~iv~~vr~ 155 (311)
T 1jub_A 82 YVLKNQKENAQEGPIFFSIAGMSAAENIAMLKKIQESDFSGITELNLSCPNV--PGEPQLA----YDFEATEKLLKEVFT 155 (311)
T ss_dssp HHHHHHHHTCSSSCCEEEECCSSHHHHHHHHHHHHHSCCCSEEEEESCCCCS--SSCCCGG----GCHHHHHHHHHHHTT
T ss_pred HHHHHHHhcCCCCCEEEEcCCCCHHHHHHHHHHHHhcCCCeEEEEeccCCCC--CCccccc----CCHHHHHHHHHHHHH
Confidence 111 23 68999999999999999999999999999 99999999995 3455666 578889999999999
Q ss_pred cCCCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCc----c--------------cCCCCcCCcCCCCCc
Q 020423 192 NTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKA----L--------------LNGISPAENRTIPPL 253 (326)
Q Consensus 192 ~~~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~----~--------------~~g~~~~~~~~~~~~ 253 (326)
.+++|+.+|++.+++ .+++.+ +++.++++|+|+|++|++.. . .+|+++ ....+.
T Consensus 156 ~~~~Pv~vKi~~~~~----~~~~~~-~a~~~~~~G~d~i~v~~~~~~g~~i~~~~~~~~~~~~~~~gG~sg---~~~~~~ 227 (311)
T 1jub_A 156 FFTKPLGVKLPPYFD----LVHFDI-MAEILNQFPLTYVNSVNSIGNGLFIDPEAESVVIKPKDGFGGIGG---AYIKPT 227 (311)
T ss_dssp TCCSCEEEEECCCCS----HHHHHH-HHHHHTTSCCCEEEECCCEEEEECEETTTTEESCSGGGGEEEEES---GGGHHH
T ss_pred hcCCCEEEEECCCCC----HHHHHH-HHHHHHHcCCcEEEecCCCCcCceeccCCCCcccccCCCCCcccc---ccccHH
Confidence 999999999998752 223333 45677889999999998641 0 011111 111223
Q ss_pred cHHHHHHHHhcCC-CceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHh-CCchhHHhHHH
Q 020423 254 KYEYYYALLRDFP-DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ-NPWYTLGHVDT 312 (326)
Q Consensus 254 ~~~~i~~i~~~~~-~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~-dP~l~~~~i~~ 312 (326)
.++.++++++... ++|||++|||.|++|+.++++.|||+|++||+++. +|++ .+++.+
T Consensus 228 ~~~~i~~v~~~~~~~ipvi~~GGI~~~~da~~~l~~GAd~V~vg~~~l~~~p~~-~~~i~~ 287 (311)
T 1jub_A 228 ALANVRAFYTRLKPEIQIIGTGGIETGQDAFEHLLCGATMLQIGTALHKEGPAI-FDRIIK 287 (311)
T ss_dssp HHHHHHHHHTTSCTTSEEEEESSCCSHHHHHHHHHHTCSEEEECHHHHHHCTHH-HHHHHH
T ss_pred HHHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHcCCCEEEEchHHHhcCcHH-HHHHHH
Confidence 4677777776543 89999999999999999999999999999999997 9995 444443
|
| >1f76_A Dihydroorotate dehydrogenase; monomer, alpha-beta-barrel, FMN binding domain, orotate complex, oxidoreductase; HET: MSE FMN ORO; 2.50A {Bacteria} SCOP: c.1.4.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.9e-30 Score=244.96 Aligned_cols=237 Identities=15% Similarity=0.130 Sum_probs=170.7
Q ss_pred ccccccCeecCCcEEEccCCCCChHHHHHHHHHcCCCcEEEecceeecccccc---------------------ccchhh
Q 020423 58 KAEMVARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQ---------------------QGNLDR 116 (326)
Q Consensus 58 ~p~~ig~~~l~nrivlAPM~~~s~~~~r~~~~~~Gg~gli~te~~~~~~~~~~---------------------~~~~~~ 116 (326)
-|.+|++++++||+++|++.. .+.++...+ +.+|+|++++|++++++.... +...+.
T Consensus 45 l~~~i~g~~l~npi~~aag~~-~~~~~~~~~-a~~G~g~i~~~~~~~~~~~g~~~pr~~~~~~d~~~in~~g~~~~g~~~ 122 (336)
T 1f76_A 45 KPVNCMGLTFKNPLGLAAGLD-KDGECIDAL-GAMGFGSIEIGTVTPRPQPGNDKPRLFRLVDAEGLINRMGFNNLGVDN 122 (336)
T ss_dssp CCEEETTEEESSSEEECTTSS-TTCCCHHHH-HHTTCSEEEEEEECSSCBCCSCSCCEEEETTTTEEEECCCCCBCCHHH
T ss_pred CCeEECCEEcCCCcEeCcccC-CcHHHHHHH-HHcCccEEEeCCCCCCCCCCCCCcceeeccccceeeecCCCCCcCHHH
Confidence 378999999999999997532 222233333 346799999999987643110 011122
Q ss_pred hhh-c--CCCCCcEEEEecCCC-------HHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHH
Q 020423 117 FLA-F--SPEQHPIVLQIGGSN-------LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAM 186 (326)
Q Consensus 117 ~~~-~--~~~~~piivQL~g~~-------~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv 186 (326)
+.+ + ...+.|+++|+.++. +++|.++++++.+ |+|+||||++||+.+ |....++++++.+++
T Consensus 123 ~~~~~~~~~~~~~~~v~i~~~~~~~i~~~~~~~~~aa~~~~~-g~d~iein~~sP~~~-------g~~~~~~~~~~~~il 194 (336)
T 1f76_A 123 LVENVKKAHYDGVLGINIGKNKDTPVEQGKDDYLICMEKIYA-YAGYIAINISSPNTP-------GLRTLQYGEALDDLL 194 (336)
T ss_dssp HHHHHHHCCCCSEEEEEECCCTTSCGGGTHHHHHHHHHHHGG-GCSEEEEECCCSSST-------TGGGGGSHHHHHHHH
T ss_pred HHHHHHhcccCCcEEEEecCCCCCcccccHHHHHHHHHHHhc-cCCEEEEEccCCCCC-------CcccccCHHHHHHHH
Confidence 221 1 123568999999887 8999999999987 999999999999853 233346799999999
Q ss_pred HHHHhcC---------CCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccC------------CCCcC
Q 020423 187 SVIAANT---------NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLN------------GISPA 245 (326)
Q Consensus 187 ~avr~~~---------~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~------------g~~~~ 245 (326)
++||+.+ ++||.+|++.+++. +++.+ +++.++++|+|+|++|+++.... |+++
T Consensus 195 ~~vr~~~~~~~~~~g~~~Pv~vKi~~~~~~----~~~~~-~a~~l~~~Gvd~i~vsn~~~~~~~~~~~~~~~~~gg~~g- 268 (336)
T 1f76_A 195 TAIKNKQNDLQAMHHKYVPIAVKIAPDLSE----EELIQ-VADSLVRHNIDGVIATNTTLDRSLVQGMKNCDQTGGLSG- 268 (336)
T ss_dssp HHHHHHHHHHHHHHTSCCCEEEECCSCCCH----HHHHH-HHHHHHHTTCSEEEECCCBCCCTTSTTSTTTTCSSEEEE-
T ss_pred HHHHHHHHhhhhcccccCceEEEecCCCCH----HHHHH-HHHHHHHcCCcEEEEeCCcccccccccccccccCCCcCC-
Confidence 9999987 89999999986532 33333 46677889999999997642111 1111
Q ss_pred CcCCCCCccHHHHHHHHhcCC-CceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHh-CCchhHHhHHHh
Q 020423 246 ENRTIPPLKYEYYYALLRDFP-DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ-NPWYTLGHVDTA 313 (326)
Q Consensus 246 ~~~~~~~~~~~~i~~i~~~~~-~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~-dP~l~~~~i~~~ 313 (326)
....+..++.++++++... ++|||++|||.|++|+.++++.|||+|++||+++. ||++ .+++.+.
T Consensus 269 --~~~~~~~~~~i~~i~~~~~~~ipVi~~GGI~~~~da~~~l~~GAd~V~igr~~l~~~P~~-~~~i~~~ 335 (336)
T 1f76_A 269 --RPLQLKSTEIIRRLSLELNGRLPIIGVGGIDSVIAAREKIAAGASLVQIYSGFIFKGPPL-IKEIVTH 335 (336)
T ss_dssp --GGGHHHHHHHHHHHHHHHTTSSCEEEESSCCSHHHHHHHHHHTCSEEEESHHHHHHCHHH-HHHHHHH
T ss_pred --chhHHHHHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHCCCCEEEeeHHHHhcCcHH-HHHHHhh
Confidence 0011223466667766543 79999999999999999999999999999999998 9994 5666543
|
| >4ef8_A Dihydroorotate dehydrogenase; phenyl isothiocyanate, PYRD, oxidoreductase, oxidoreductase-oxidor inhibitor complex; HET: FMN; 1.56A {Leishmania major} PDB: 3gye_A* 3gz3_A* 4ef9_A* 3tro_A* 3tjx_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=3.6e-29 Score=236.65 Aligned_cols=238 Identities=15% Similarity=0.149 Sum_probs=176.9
Q ss_pred cccccCeecCCcEEEccCCC-CChHHHHHHHHHcCCCcEEEecceeecccc-------------------ccccchhhhh
Q 020423 59 AEMVARQYLPPWFSVAPMMD-WTDNHYRTLARLISKHAWLYTEMLAAETII-------------------YQQGNLDRFL 118 (326)
Q Consensus 59 p~~ig~~~l~nrivlAPM~~-~s~~~~r~~~~~~Gg~gli~te~~~~~~~~-------------------~~~~~~~~~~ 118 (326)
+.++.|++++||+++|.=.. .+...++.+. .. |+|.+.+..+..++.. .++...+.++
T Consensus 38 ~~~~~Gl~~~NPv~lAAG~~~~~~e~~~~l~-~~-G~G~v~~ktvt~~pq~GNp~PR~~~~~~~~iN~~G~~n~G~~~~~ 115 (354)
T 4ef8_A 38 QVNLLNNTFANPFMNAAGVMCTTTEELVAMT-ES-ASGSLVSKSCTPALREGNPTPRYQALPLGSINSMGLPNNGFDFYL 115 (354)
T ss_dssp CEEETTEEESSSEEECTTSSCSSHHHHHHHH-HS-SCSCEEEEEECSSCBCCSCSCCEEEETTEEEECCCCCBCCHHHHH
T ss_pred ceEECCEECCCCCEeccCCCCCCHHHHHHHH-Hc-CCCeEEeCcccCcccCCCCCCcEEecchhhhccCCCCCcCHHHHH
Confidence 47889999999999987654 3344444443 33 4888888877655321 0111122222
Q ss_pred ----hcC-CCCCcEEEEecCCCHHHHHHHHHHHH---HCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHH
Q 020423 119 ----AFS-PEQHPIVLQIGGSNLDNLAKATELAN---AYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 190 (326)
Q Consensus 119 ----~~~-~~~~piivQL~g~~~~~f~~aA~~a~---~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr 190 (326)
+.. ..+.|+++||+|.++++|.++|+++. ++|+|+||||++||+.. + |..+..+++.+.+++++++
T Consensus 116 ~~l~~~~~~~~~pvivsI~G~~~~d~~~~a~~l~~~~~~g~d~ielNisCPn~~----g--g~~l~~~~e~~~~il~av~ 189 (354)
T 4ef8_A 116 AYAAEQHDYGKKPLFLSMSGLSMRENVEMCKRLAAVATEKGVILELNLSCPNVP----G--KPQVAYDFDAMRQCLTAVS 189 (354)
T ss_dssp HHHHHTCCTTTCCEEEEECCSSHHHHHHHHHHHHHHHHHHCCEEEEECSSCCST----T--SCCGGGSHHHHHHHHHHHH
T ss_pred HHHHHHhhcCCCcEEEEeccCCHHHHHHHHHHHhhhhhcCCCEEEEeCCCCCCC----C--chhhccCHHHHHHHHHHHH
Confidence 122 24689999999999999999999998 57899999999999863 2 5567789999999999999
Q ss_pred hcCCCcEEEEeccCCCCCccHHHHHHHHHHHhhhCC-ccEEEEecCC------------c------ccCCCCcCCcCCCC
Q 020423 191 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSP-TRHFIIHSRK------------A------LLNGISPAENRTIP 251 (326)
Q Consensus 191 ~~~~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~G-vd~I~v~~~~------------~------~~~g~~~~~~~~~~ 251 (326)
+.+++||+||++++++ .+++.+ +++.++++| +|.|+++... . ..+|+++ +.++
T Consensus 190 ~~~~~PV~vKi~p~~d----~~~~~~-~a~~~~~~Gg~d~I~~~NT~~~g~~idi~~~~~~~~~~~~~gGlSG---~~i~ 261 (354)
T 4ef8_A 190 EVYPHSFGVKMPPYFD----FAHFDA-AAEILNEFPKVQFITCINSIGNGLVIDAETESVVIKPKQGFGGLGG---RYVL 261 (354)
T ss_dssp HHCCSCEEEEECCCCS----HHHHHH-HHHHHHTCTTEEEEEECCCEEEEECEETTTTEESCSGGGGEEEEEG---GGGH
T ss_pred HhhCCCeEEEecCCCC----HHHHHH-HHHHHHhCCCccEEEEecccCcceeeeccCCccccccccccCCCCC---CCCc
Confidence 9999999999999863 233333 455666788 9999874321 1 1233333 2344
Q ss_pred CccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhC-CchhHHhHHHh
Q 020423 252 PLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN-PWYTLGHVDTA 313 (326)
Q Consensus 252 ~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~d-P~l~~~~i~~~ 313 (326)
+..|+.++++++...++|||++|||.|++|+.++++.|||+||+||+++.| |+++ +++.+.
T Consensus 262 p~a~~~i~~v~~~~~~ipII~~GGI~s~~da~~~l~aGAd~V~vgra~l~~GP~~~-~~i~~~ 323 (354)
T 4ef8_A 262 PTALANINAFYRRCPGKLIFGCGGVYTGEDAFLHVLAGASMVQVGTALQEEGPSIF-ERLTSE 323 (354)
T ss_dssp HHHHHHHHHHHHHCTTSEEEEESCCCSHHHHHHHHHHTEEEEEECHHHHHHCTTHH-HHHHHH
T ss_pred hHHHHHHHHHHHhCCCCCEEEECCcCCHHHHHHHHHcCCCEEEEhHHHHHhCHHHH-HHHHHH
Confidence 567889999988755899999999999999999999999999999999999 9954 444443
|
| >1ep3_A Dihydroorotate dehydrogenase B (PYRD subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ep2_A* 1ep1_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.3e-29 Score=234.66 Aligned_cols=233 Identities=20% Similarity=0.284 Sum_probs=169.2
Q ss_pred ccccccCeecCCcEEEcc-CCCCChHHHHHHHHHcCCCcEEEecceeecccc-------------------ccccchhhh
Q 020423 58 KAEMVARQYLPPWFSVAP-MMDWTDNHYRTLARLISKHAWLYTEMLAAETII-------------------YQQGNLDRF 117 (326)
Q Consensus 58 ~p~~ig~~~l~nrivlAP-M~~~s~~~~r~~~~~~Gg~gli~te~~~~~~~~-------------------~~~~~~~~~ 117 (326)
-|+++++++++||+++|| |.+.++. ++.+.. .+|+|+++++.+..++.. -.+...+.+
T Consensus 7 l~~~~~g~~l~npi~~aag~~~~~~~-~~~~~~-~~g~G~~~~~si~~~p~~g~~~p~l~~~~~g~~~~~g~~~~~~~~~ 84 (311)
T 1ep3_A 7 LSVKLPGLDLKNPIIPASGCFGFGEE-YAKYYD-LNKLGSIMVKATTLHPRFGNPTPRVAETASGMLNAIGLQNPGLEVI 84 (311)
T ss_dssp TCEEETTEEESSSEEECTTSSTTSTT-GGGTSC-GGGSSCEEEEEECSSCBCCCCSCCEEEETTEEEECCCCCBCCHHHH
T ss_pred cceEECCEECCCCcEECCCCCCCCHH-HHHHHH-hcCCCEEEeCeeccCccCCCCCCeEEECCcccccccCCCCcCHHHH
Confidence 368999999999999999 8887753 332221 356888887765433210 011111121
Q ss_pred ----h-hcCC--CCCcEEEEecCCCHHHHHHHHHHHHH-CCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHH
Q 020423 118 ----L-AFSP--EQHPIVLQIGGSNLDNLAKATELANA-YNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVI 189 (326)
Q Consensus 118 ----~-~~~~--~~~piivQL~g~~~~~f~~aA~~a~~-aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~av 189 (326)
+ .+++ .+.|+++||++.++++|.++++++.+ +|+|+||||++||+. +.+.+.|| .+++++.++++++
T Consensus 85 ~~~~~~~~~~~~~~~p~~v~l~~~~~~~~~~~a~~~~~~~g~d~iei~~~~p~~-~~g~~~~g----~~~~~~~eii~~v 159 (311)
T 1ep3_A 85 MTEKLPWLNENFPELPIIANVAGSEEADYVAVCAKIGDAANVKAIELNISCPNV-KHGGQAFG----TDPEVAAALVKAC 159 (311)
T ss_dssp HHTHHHHHHHHCTTSCEEEEECCSSHHHHHHHHHHHTTSTTEEEEEEECCSEEG-GGTTEEGG----GCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcEEEEEcCCCHHHHHHHHHHHhccCCCCEEEEeCCCCCC-CCchhhhc----CCHHHHHHHHHHH
Confidence 1 1222 37899999999999999999999998 999999999999984 34445566 6899999999999
Q ss_pred HhcCCCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCccc---------------CCCCcCCcCCCCCcc
Q 020423 190 AANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALL---------------NGISPAENRTIPPLK 254 (326)
Q Consensus 190 r~~~~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~---------------~g~~~~~~~~~~~~~ 254 (326)
++.+++|+.+|++.++.+. .+ +++.++++|+|+|++++..... +|+++ ....+..
T Consensus 160 ~~~~~~pv~vk~~~~~~~~---~~----~a~~l~~~G~d~i~v~~~~~g~~i~~~~~~~~~~~~~~g~~g---~~~~~~~ 229 (311)
T 1ep3_A 160 KAVSKVPLYVKLSPNVTDI---VP----IAKAVEAAGADGLTMINTLMGVRFDLKTRQPILANITGGLSG---PAIKPVA 229 (311)
T ss_dssp HHHCSSCEEEEECSCSSCS---HH----HHHHHHHTTCSEEEECCCEEECCBCTTTCSBSSTTSCEEEES---GGGHHHH
T ss_pred HHhcCCCEEEEECCChHHH---HH----HHHHHHHcCCCEEEEeCCCcccccCcccCCccccCCCCcccC---ccchHHH
Confidence 9999999999999876432 22 2445678999999996532100 01111 0001112
Q ss_pred HHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhCCchhHH
Q 020423 255 YEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLG 308 (326)
Q Consensus 255 ~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~dP~l~~~ 308 (326)
++.++++++.. ++|||++|||.+++++.++++.|||+|++||+++.+|+++.+
T Consensus 230 ~~~i~~i~~~~-~ipvia~GGI~~~~d~~~~l~~GAd~V~vg~~~l~~p~~~~~ 282 (311)
T 1ep3_A 230 LKLIHQVAQDV-DIPIIGMGGVANAQDVLEMYMAGASAVAVGTANFADPFVCPK 282 (311)
T ss_dssp HHHHHHHHTTC-SSCEEECSSCCSHHHHHHHHHHTCSEEEECTHHHHCTTHHHH
T ss_pred HHHHHHHHHhc-CCCEEEECCcCCHHHHHHHHHcCCCEEEECHHHHcCcHHHHH
Confidence 46677776654 999999999999999999999999999999999999996433
|
| >3oix_A Putative dihydroorotate dehydrogenase; dihydrooro oxidase; TIM barrel, oxidoreductase; HET: MLY FMN; 2.40A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=99.96 E-value=4.2e-28 Score=228.71 Aligned_cols=239 Identities=14% Similarity=0.168 Sum_probs=172.1
Q ss_pred cccccCeecCCcEEEccCCCCChHHHHHHHHHcCCCcEEEecceeeccccc-------------------cccchhhhh-
Q 020423 59 AEMVARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIY-------------------QQGNLDRFL- 118 (326)
Q Consensus 59 p~~ig~~~l~nrivlAPM~~~s~~~~r~~~~~~Gg~gli~te~~~~~~~~~-------------------~~~~~~~~~- 118 (326)
+.++.|++++||+++|.=..-.+.++....... |+|.+.+..+..++..- ++...+.++
T Consensus 39 ~~~~~Gl~~~NPv~lAaG~~~~~~e~~~~~~~~-G~G~v~~ktvt~~pq~gnp~PR~~~~~~~~iN~~G~~n~G~~~~~~ 117 (345)
T 3oix_A 39 HTTIGSFDFDNCLMNAAGVYCMTREELAAIDHS-EAGSFVTXTGTLEERAGNPQPRYADTKLGSINSMGLPNLGINYYLD 117 (345)
T ss_dssp CEEETTEEESCSEEECTTSSCSSHHHHHHHHTS-SCSBCBCCCBCSSCBCCSCSCCEEECSSEEEECCCCCBSCHHHHHH
T ss_pred CeEECCEECCCCCEEcCCCCCCCHHHHHHHHHc-CCCeEEeeeecCCCCCCCCCCcEEecccchhccCCCCChhHHHHHH
Confidence 578999999999999854333344444444444 48999888887664210 111122222
Q ss_pred ---hc--CCCCCcEEEEecCCCHHHHHHHHHHHHHCCCC-EEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhc
Q 020423 119 ---AF--SPEQHPIVLQIGGSNLDNLAKATELANAYNYD-EINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAAN 192 (326)
Q Consensus 119 ---~~--~~~~~piivQL~g~~~~~f~~aA~~a~~aG~d-~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~ 192 (326)
.. ...+.|+++||+|.++++|.++|++++++|+| +||||++||+.. + |..+..+++.+.++++++++.
T Consensus 118 ~l~~~~~~~~~~pvivsI~g~~~~d~~~~a~~l~~~g~~d~ielNisCPn~~----G--~~~l~~~~e~l~~il~av~~~ 191 (345)
T 3oix_A 118 YVTELQKQPDSKNHFLSLVGMSPEETHTILXMVEASKYQGLVELNLSCPNVP----G--XPQIAYDFETTDQILSEVFTY 191 (345)
T ss_dssp HHHHHHHSTTCCCCEEEECCSSHHHHHHHHHHHHHSSCCSEEEEECSCCCST----T--CCCGGGCHHHHHHHHHHHTTT
T ss_pred HHHHHhhccCCCCEEEEecCCCHHHHHHHHHHHhccCCCcEEEEecCCCCcC----C--chhhcCCHHHHHHHHHHHHHH
Confidence 11 34578999999999999999999999999987 999999999853 2 456668999999999999999
Q ss_pred CCCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEE----------EecCCcc------cCCCCcCCcCCCCCccHH
Q 020423 193 TNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFI----------IHSRKAL------LNGISPAENRTIPPLKYE 256 (326)
Q Consensus 193 ~~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~----------v~~~~~~------~~g~~~~~~~~~~~~~~~ 256 (326)
+++||+||++++. +..++.+. ++.....|++.|. +|.++.. .+|+++ +.+.+..++
T Consensus 192 ~~~PV~vKi~p~~----~~~~~a~~-~~~aga~~i~~int~nt~g~~~~i~~~~~~~~~~~~~gGlSG---~ai~p~a~~ 263 (345)
T 3oix_A 192 FTKPLGIKLPPYF----DIVHFDQA-AAIFNXYPLTFVNCINSIGNGLVIEDETVVIXPKNGFGGIGG---DYVKPTALA 263 (345)
T ss_dssp CCSCEEEEECCCC----CHHHHHHH-HHHHTTSCCSEEEECCCEEEEECEETTEESCSGGGGEEEEEE---GGGHHHHHH
T ss_pred hCCCeEEEECCCC----CHHHHHHH-HHHhCCCceEEEEeecccccceeeccCccccccccccCCcCC---ccccHHHHH
Confidence 9999999999973 23444442 2233345666543 4443321 233333 233445578
Q ss_pred HHHHHHhcCC-CceEEEeCCCCCHHHHHHHHHhCCChhhhhHH-HHhCCchhHHhHHHh
Q 020423 257 YYYALLRDFP-DLTFTLNGGINTVDEVNAALRKGAHHVMVGRA-AYQNPWYTLGHVDTA 313 (326)
Q Consensus 257 ~i~~i~~~~~-~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRa-ll~dP~l~~~~i~~~ 313 (326)
.++++++... ++|||++|||.|++|+.++++.|||+||+||+ ++.+|++ .+++.+.
T Consensus 264 ~v~~i~~~~~~~ipIIg~GGI~s~~da~~~l~aGAd~V~igra~~~~gP~~-~~~i~~~ 321 (345)
T 3oix_A 264 NVHAFYKRLNPSIQIIGTGGVXTGRDAFEHILCGASMVQIGTALHQEGPQI-FKRITKE 321 (345)
T ss_dssp HHHHHHTTSCTTSEEEEESSCCSHHHHHHHHHHTCSEEEESHHHHHHCTHH-HHHHHHH
T ss_pred HHHHHHHHcCCCCcEEEECCCCChHHHHHHHHhCCCEEEEChHHHhcChHH-HHHHHHH
Confidence 8888887754 79999999999999999999999999999999 7899995 4444443
|
| >1tv5_A Dhodehase, dihydroorotate dehydrogenase homolog, mitochondri, dihydroorotate; alpha-beta barrel, TIM barrel, oxidoreductase; HET: A26 FMN ORO N8E; 2.40A {Plasmodium falciparum} SCOP: c.1.4.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=4.1e-28 Score=235.31 Aligned_cols=236 Identities=14% Similarity=0.139 Sum_probs=173.2
Q ss_pred cccccCeecCCcEEEccCCCCChHHHHHHHHHcCCCcEEEecceeeccccc----------c-----------ccchhhh
Q 020423 59 AEMVARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIY----------Q-----------QGNLDRF 117 (326)
Q Consensus 59 p~~ig~~~l~nrivlAPM~~~s~~~~r~~~~~~Gg~gli~te~~~~~~~~~----------~-----------~~~~~~~ 117 (326)
|.+|+++++|||+++|++..-....++.+ ...|+|++.++.+++++..- . +...+.+
T Consensus 83 ~~~i~Gl~~~NPvglAAG~dk~~~~~~~l--~~~GfG~v~~gtvT~~pq~GNp~PR~~rl~e~~~iiN~~GfnN~G~~~~ 160 (443)
T 1tv5_A 83 CTNIKHLDFINPFGVAAGFDKNGVCIDSI--LKLGFSFIEIGTITPRGQTGNAKPRIFRDVESRSIINSCGFNNMGCDKV 160 (443)
T ss_dssp CEEETTEEESSSEEECTTTTTTCSSHHHH--HTTTCSEEEEEEECSSCBCCSCSCCEEEETTTTEEEECCCSCBSCHHHH
T ss_pred CeEECCEEeCCCcEECCcccCccHHHHHH--HhcCCCEEEEeeeecCCCCCCCCccEEeccccceeeeccccCChhHHHH
Confidence 78999999999999998875443455553 34679999999998764321 1 0111111
Q ss_pred hh-cC---C--------CCCcEEEEecCCC-----HHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHH
Q 020423 118 LA-FS---P--------EQHPIVLQIGGSN-----LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPK 180 (326)
Q Consensus 118 ~~-~~---~--------~~~piivQL~g~~-----~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~ 180 (326)
.+ ++ . ...++++||.+++ +++|+++++++.+ ++|+||||++||+.+ |...+++++
T Consensus 161 ~~~l~~~~~~~~~~~~~~~~~vgvni~~~~~~~~~~~dy~~~a~~l~~-~aD~ieiNiscPnt~-------Glr~lq~~~ 232 (443)
T 1tv5_A 161 TENLILFRKRQEEDKLLSKHIVGVSIGKNKDTVNIVDDLKYCINKIGR-YADYIAINVSSPNTP-------GLRDNQEAG 232 (443)
T ss_dssp HHHHHHHHHHHHHCSTTTTCEEEEEECCCTTCSCHHHHHHHHHHHHGG-GCSEEEEECCCTTST-------TGGGGGSHH
T ss_pred HHHHHHHhhhcccccccCCceEEEEecCcccchHHHHHHHHHHHHHhc-CCCEEEEeccCCCCc-------ccccccCHH
Confidence 11 11 0 1457999999987 8999999999988 699999999999853 556668899
Q ss_pred HHHHHHHHHHhc--------------------------------------------------CCCc-EEEEeccCCCCCc
Q 020423 181 FVGEAMSVIAAN--------------------------------------------------TNVP-VSVKCRIGVDDHD 209 (326)
Q Consensus 181 ~l~eiv~avr~~--------------------------------------------------~~~p-v~vK~r~g~~~~~ 209 (326)
.+.+++++|+++ .++| |.||+++++++
T Consensus 233 ~l~~il~~v~~~~~~~~~~~~~~~g~~~~~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~V~vKispd~~~-- 310 (443)
T 1tv5_A 233 KLKNIILSVKEEIDNLEKNNIMNDESTYNEDNKIVEKKNNFNKNNSHMMKDAKDNFLWFNTTKKKPLVFVKLAPDLNQ-- 310 (443)
T ss_dssp HHHHHHHHHHHHHHHHC--------------------------------------CCCCSSSSSCCEEEEEECSCCCH--
T ss_pred HHHHHHHHHHHHHhhhcccCccccccCHHHHHHHHHHhhcccccchhhhhhhhhcchhcccCCCCCeEEEEeCCCCCH--
Confidence 999999999864 3678 99999997643
Q ss_pred cHHHHHHHHHHHhhhCCccEEEEecCCccc----------CCCCcCCcCCCCCccHHHHHHHHhcCC-CceEEEeCCCCC
Q 020423 210 SYNQLCDFIYKVSSLSPTRHFIIHSRKALL----------NGISPAENRTIPPLKYEYYYALLRDFP-DLTFTLNGGINT 278 (326)
Q Consensus 210 ~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~----------~g~~~~~~~~~~~~~~~~i~~i~~~~~-~iPVIa~GgI~s 278 (326)
+++.+ +++.++++|+|+|++++++... +|+++ ....+..++.++++++... ++|||++|||.|
T Consensus 311 --ed~~~-iA~~~~~aGaDgI~v~ntt~~~~d~~~~~~~~GGlSG---~~~~~~sl~~i~~v~~~v~~~iPVIg~GGI~s 384 (443)
T 1tv5_A 311 --EQKKE-IADVLLETNIDGMIISNTTTQINDIKSFENKKGGVSG---AKLKDISTKFICEMYNYTNKQIPIIASGGIFS 384 (443)
T ss_dssp --HHHHH-HHHHHHHTTCSEEEECCCBSCCCCCGGGTTCCSEEEE---HHHHHHHHHHHHHHHHHTTTCSCEEEESSCCS
T ss_pred --HHHHH-HHHHHHHcCCCEEEEECCCcccccccccccccCCcCC---CcchHHHHHHHHHHHHHcCCCCcEEEECCCCC
Confidence 23333 5667788999999999876421 12211 0011223567777776643 899999999999
Q ss_pred HHHHHHHHHhCCChhhhhHHHHh-CCchhHHhHHHh
Q 020423 279 VDEVNAALRKGAHHVMVGRAAYQ-NPWYTLGHVDTA 313 (326)
Q Consensus 279 ~~da~~~l~~GaD~V~iGRall~-dP~l~~~~i~~~ 313 (326)
++|+.++++.|||+||+||+++. +|++ .+++.+.
T Consensus 385 ~~DA~e~l~aGAd~Vqigrall~~gP~l-~~~i~~~ 419 (443)
T 1tv5_A 385 GLDALEKIEAGASVCQLYSCLVFNGMKS-AVQIKRE 419 (443)
T ss_dssp HHHHHHHHHTTEEEEEESHHHHHHGGGH-HHHHHHH
T ss_pred HHHHHHHHHcCCCEEEEcHHHHhcChHH-HHHHHHH
Confidence 99999999999999999999886 9995 5555443
|
| >3zwt_A Dihydroorotate dehydrogenase (quinone), mitochond; oxidoreductase; HET: FMN ORO KFZ; 1.55A {Homo sapiens} PDB: 1d3h_A* 2bxv_A* 2prh_A* 2prl_A* 2prm_A* 3f1q_A* 3fj6_A* 3fjl_A* 3g0u_A* 3g0x_A* 3zws_A* 1d3g_A* 3u2o_A* 2fpv_A* 2fpt_A* 2fpy_A* 2fqi_A* 3kvl_A* 3kvk_A* 3kvj_A* ... | Back alignment and structure |
|---|
Probab=99.95 E-value=3.3e-27 Score=224.66 Aligned_cols=236 Identities=14% Similarity=0.144 Sum_probs=171.5
Q ss_pred cccccCeecCCcEEEccCCCCChHHHHHHHHHcCCCcEEEecceeeccccc---------------------cccchhhh
Q 020423 59 AEMVARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIY---------------------QQGNLDRF 117 (326)
Q Consensus 59 p~~ig~~~l~nrivlAPM~~~s~~~~r~~~~~~Gg~gli~te~~~~~~~~~---------------------~~~~~~~~ 117 (326)
+.++.|++++|++++|.=..-+...++.+.. . |+|.+.+..++.++..- ++...+.+
T Consensus 51 ~~~~~Gl~~~NPvglAaG~~~~~~~~~~~~~-~-g~G~v~~ktvt~~pq~GNp~PR~~~~~~~~~~iN~~G~~N~G~~~~ 128 (367)
T 3zwt_A 51 EVRVLGHKFRNPVGIAAGFDKHGEAVDGLYK-M-GFGFVEIGSVTPKPQEGNPRPRVFRLPEDQAVINRYGFNSHGLSVV 128 (367)
T ss_dssp CEEETTEEESSSEEECTTSSTTSSSHHHHHH-T-TCSEEEEEEECSSCBCCSCSCCEEEEGGGTEEEECCCCCBCCHHHH
T ss_pred cEEECCEEcCCCCEeCCCcCCCHHHHHHHHh-c-CcCeEEeCCccCCCCCCCCCCeEEEecCccceeeccCCCCccHHHH
Confidence 4789999999999999543323344555544 3 58999998887654210 11111121
Q ss_pred hh-cC----------CCCCcEEEEecCC-----CHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHH
Q 020423 118 LA-FS----------PEQHPIVLQIGGS-----NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKF 181 (326)
Q Consensus 118 ~~-~~----------~~~~piivQL~g~-----~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~ 181 (326)
++ +. ..+.|+++||.++ ++++|+++++.+.+. +|+||||++||+.. |..++++++.
T Consensus 129 ~~~l~~~~~~~~~~~~~~~pv~vniggn~~t~~~~~dy~~~~~~~~~~-ad~ielNisCPn~~-------G~~~l~~~~~ 200 (367)
T 3zwt_A 129 EHRLRARQQKQAKLTEDGLPLGVNLGKNKTSVDAAEDYAEGVRVLGPL-ADYLVVNVSSPNTA-------GLRSLQGKAE 200 (367)
T ss_dssp HHHHHTTHHHHHHHHHTTCCEEEEECCCTTCSCHHHHHHHHHHHHGGG-CSEEEEECCCTTST-------TGGGGGSHHH
T ss_pred HHHHHHHhhhccccccCCceEEEEEecCCCCCcCHHHHHHHHHHHhhh-CCEEEEECCCCCCC-------CccccCCHHH
Confidence 11 11 1367999999985 689999999999874 79999999999853 3446788999
Q ss_pred HHHHHHHHHhc-------CCCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcc------------cCCC
Q 020423 182 VGEAMSVIAAN-------TNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKAL------------LNGI 242 (326)
Q Consensus 182 l~eiv~avr~~-------~~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~------------~~g~ 242 (326)
+.+++++++++ +++||+||+++++++ +++.+ +++.++++|+|.|++|+++.. .+|+
T Consensus 201 l~~ll~av~~~~~~~~~~~~~Pv~vKi~p~~~~----~~~~~-ia~~~~~aGadgi~v~ntt~~r~~~~~~~~~~~~gGl 275 (367)
T 3zwt_A 201 LRRLLTKVLQERDGLRRVHRPAVLVKIAPDLTS----QDKED-IASVVKELGIDGLIVTNTTVSRPAGLQGALRSETGGL 275 (367)
T ss_dssp HHHHHHHHHHHHHTSCGGGCCEEEEEECSCCCH----HHHHH-HHHHHHHHTCCEEEECCCBSCCCTTCCCTTTTSSSEE
T ss_pred HHHHHHHHHHHHhhccccCCceEEEEeCCCCCH----HHHHH-HHHHHHHcCCCEEEEeCCCcccccccccccccccCCc
Confidence 99999999764 689999999998653 23333 566778899999999977521 1223
Q ss_pred CcCCcCCCCCccHHHHHHHHhcCC-CceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHH-hCCchhHHhHHHh
Q 020423 243 SPAENRTIPPLKYEYYYALLRDFP-DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAY-QNPWYTLGHVDTA 313 (326)
Q Consensus 243 ~~~~~~~~~~~~~~~i~~i~~~~~-~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall-~dP~l~~~~i~~~ 313 (326)
++ ..+.+..++.++++++... ++|||++|||.|++|+.++++.|||+||+||+++ .+|++ .+++.+.
T Consensus 276 SG---~~i~p~a~~~v~~i~~~v~~~ipvI~~GGI~s~~da~~~l~~GAd~V~vgra~l~~gP~~-~~~i~~~ 344 (367)
T 3zwt_A 276 SG---KPLRDLSTQTIREMYALTQGRVPIIGVGGVSSGQDALEKIRAGASLVQLYTALTFWGPPV-VGKVKRE 344 (367)
T ss_dssp EE---GGGHHHHHHHHHHHHHHTTTCSCEEEESSCCSHHHHHHHHHHTCSEEEESHHHHHHCTHH-HHHHHHH
T ss_pred CC---cccchhHHHHHHHHHHHcCCCceEEEECCCCCHHHHHHHHHcCCCEEEECHHHHhcCcHH-HHHHHHH
Confidence 22 1223445678888887754 7999999999999999999999999999999996 57995 4444443
|
| >1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.3e-25 Score=239.46 Aligned_cols=242 Identities=17% Similarity=0.203 Sum_probs=173.3
Q ss_pred ccccccCeecCCcEEEccCCCCChHHHHHHHHHcCCCcEEEecceeecccc--------cc-------------------
Q 020423 58 KAEMVARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETII--------YQ------------------- 110 (326)
Q Consensus 58 ~p~~ig~~~l~nrivlAPM~~~s~~~~r~~~~~~Gg~gli~te~~~~~~~~--------~~------------------- 110 (326)
-+.++.|++++||+++|||...++.++...+...| .|++.++.+..+... ..
T Consensus 533 ls~~~~G~~~~nPv~lAa~~~~~~~~~~~~~~~~g-~G~vv~~t~~~~~~~~gn~~pr~~~~~~~g~~~~~~~~~~~n~e 611 (1025)
T 1gte_A 533 ISVEMAGLKFINPFGLASAAPTTSSSMIRRAFEAG-WGFALTKTFSLDKDIVTNVSPRIVRGTTSGPMYGPGQSSFLNIE 611 (1025)
T ss_dssp CCEEETTEEESSSEEECSSGGGSSHHHHHHHHHHT-CSEEECCCBCCGGGCCCCCSSCEEECCTTCSCCSSCCSCEEECC
T ss_pred ceeeeccccccCcccccCCCCCCCHHHHHHHHHCC-cCeEEeceecccccccCCCCccEEeccccccccCCchhheeeec
Confidence 35788899999999999998877777766655554 788887766543211 00
Q ss_pred ---ccchhhh----hhcC--CCCCcEEEEe-cCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHH
Q 020423 111 ---QGNLDRF----LAFS--PEQHPIVLQI-GGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPK 180 (326)
Q Consensus 111 ---~~~~~~~----~~~~--~~~~piivQL-~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~ 180 (326)
+...+.+ .++. ..+.|+++|+ .+.++++|.++++++.++|+|+||||++||+. .+.+.||++++++++
T Consensus 612 ~~~~~~~~~~~~~i~~~~~~~~~~~~i~~i~~g~~~~~~~~~a~~~~~~g~d~iein~~~P~~--~~~~~~G~~~~~~~~ 689 (1025)
T 1gte_A 612 LISEKTAAYWCQSVTELKADFPDNIVIASIMCSYNKNDWMELSRKAEASGADALELNLSCPHG--MGERGMGLACGQDPE 689 (1025)
T ss_dssp CSCSSCHHHHHHHHHHHHHHCTTSEEEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECCCBCC--CC-----SBGGGCHH
T ss_pred cccchhHHHHHHHHHHHHhcCCCCCeEEEecCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCC--CCCCCcccccccCHH
Confidence 0001111 1111 1257899988 57899999999999999999999999999986 345679999999999
Q ss_pred HHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCc---------------------cc
Q 020423 181 FVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKA---------------------LL 239 (326)
Q Consensus 181 ~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~---------------------~~ 239 (326)
++.++++++++.+++||++|++.+.++ +.+ +++.++++|+|+|+++.... ..
T Consensus 690 ~~~~iv~~v~~~~~~Pv~vK~~~~~~~---~~~----~a~~~~~~G~d~i~v~Nt~~~~~~~~~~~~~~~~~~~~gr~~~ 762 (1025)
T 1gte_A 690 LVRNICRWVRQAVQIPFFAKLTPNVTD---IVS----IARAAKEGGADGVTATNTVSGLMGLKADGTPWPAVGAGKRTTY 762 (1025)
T ss_dssp HHHHHHHHHHHHCSSCEEEEECSCSSC---HHH----HHHHHHHHTCSEEEECCCEEECCCBCTTSCBSSCBTTTTBBCC
T ss_pred HHHHHHHHHHHhhCCceEEEeCCChHH---HHH----HHHHHHHcCCCEEEEeccccccccccccccccccccccccccC
Confidence 999999999999999999999986542 333 34566789999999953210 01
Q ss_pred CCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhCCchhHHhHHH
Q 020423 240 NGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDT 312 (326)
Q Consensus 240 ~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~dP~l~~~~i~~ 312 (326)
+|+++ ....+..++.++++++...++|||++|||.|++|+.++++.|||+|++||+++.+|+.+.+.+.+
T Consensus 763 gg~sg---~~~~~~~~~~v~~v~~~~~~ipvi~~GGI~s~~da~~~l~~Ga~~v~vg~~~l~~~~~~~~~~~~ 832 (1025)
T 1gte_A 763 GGVSG---TAIRPIALRAVTTIARALPGFPILATGGIDSAESGLQFLHSGASVLQVCSAVQNQDFTVIQDYCT 832 (1025)
T ss_dssp EEEES---GGGHHHHHHHHHHHHHHSTTCCEEEESSCCSHHHHHHHHHTTCSEEEESHHHHTSCTTHHHHHHH
T ss_pred CCCCc---ccchhHHHHHHHHHHHHcCCCCEEEecCcCCHHHHHHHHHcCCCEEEEeeccccCCccHHHHHHH
Confidence 11111 01112224677888777658999999999999999999999999999999999854435554443
|
| >3i65_A Dihydroorotate dehydrogenase homolog, mitochondrial; triazolopyrimidine,inhibitor, DSM1, FAD, flavoprotein, membrane, mitochondrion; HET: JZ8 FMN ORO LDA; 2.00A {Plasmodium falciparum 3D7} PDB: 3i68_A* 3i6r_A* 3o8a_A* 3sfk_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.1e-25 Score=215.63 Aligned_cols=237 Identities=14% Similarity=0.169 Sum_probs=165.9
Q ss_pred ccccccCeecCCcEEEccCCCCChHHHHHHHHHcCCCcEEEecceeecccc-------c--------------cccchhh
Q 020423 58 KAEMVARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETII-------Y--------------QQGNLDR 116 (326)
Q Consensus 58 ~p~~ig~~~l~nrivlAPM~~~s~~~~r~~~~~~Gg~gli~te~~~~~~~~-------~--------------~~~~~~~ 116 (326)
.+.++.|++++||+.+|.=..-.-..+..+. +. |+|.+.+..+..++.. . ++...+.
T Consensus 84 l~v~~~Gl~f~NPvglAAG~dk~~~~~~~l~-~l-GfG~vevgtvT~~pq~GNp~PRlfrl~e~~aiiN~~GfnN~G~d~ 161 (415)
T 3i65_A 84 ACTNIKHLDFINPFGVAAGFDKNGVCIDSIL-KL-GFSFIEIGTITPRGQTGNAKPRIFRDVESRSIINSCGFNNMGCDK 161 (415)
T ss_dssp GCEEETTEEESSSEEECTTSSTTCSSHHHHH-TT-TCSEEEEEEECSSCBCCSCSCCEEEEGGGTEEEECCCSCBCCHHH
T ss_pred ccEEECCEECCCCCEECCCCCCCHHHHHHHH-Hc-CCCeEEeCcccCCcCCCCCCCeEEeccCCCceeecCCCCchhHHH
Confidence 3678999999999999875433333444433 33 4888888877665321 0 1111111
Q ss_pred hhh----cC---C-----CCCcEEEEecCCC-----HHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCH
Q 020423 117 FLA----FS---P-----EQHPIVLQIGGSN-----LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDP 179 (326)
Q Consensus 117 ~~~----~~---~-----~~~piivQL~g~~-----~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~ 179 (326)
+++ .. + ...++++||.++. +++|.++++++.++ +|+||||++||+.. |..+++++
T Consensus 162 ~~~~l~~~~~~~~~~~~~~~~~vgvnIg~nk~t~~~~~Dy~~~a~~l~~~-ad~ieiNiScPNt~-------Gl~~lq~~ 233 (415)
T 3i65_A 162 VTENLILFRKRQEEDKLLSKHIVGVSIGKNKDTVNIVDDLKYCINKIGRY-ADYIAINVSSPNTP-------GLRDNQEA 233 (415)
T ss_dssp HHHHHHHHHHHHTTCGGGTTCEEEEEECCCTTCSCHHHHHHHHHHHHGGG-CSEEEEECCCCC---------------CC
T ss_pred HHHHHHHHHhhccccccccCceEEEEeccccCccccHHHHHHHHHHHHhh-CCEEEEECCCCCCC-------CcccccCH
Confidence 111 11 1 1457899999887 89999999999998 89999999999863 56677899
Q ss_pred HHHHHHHHHHHhc--------------------CCCc-EEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcc
Q 020423 180 KFVGEAMSVIAAN--------------------TNVP-VSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKAL 238 (326)
Q Consensus 180 ~~l~eiv~avr~~--------------------~~~p-v~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~ 238 (326)
+.+.+++++|+++ ..+| |.||+++++++ +++.+ +++.++++|+|.|++++++..
T Consensus 234 ~~l~~ll~aV~~~~~~~~~~~~~~~~~~~~~~~~~~P~V~VKi~pd~~~----~~i~~-iA~~a~~aGaDgIiv~Ntt~~ 308 (415)
T 3i65_A 234 GKLKNIILSVKEEIDNLEKNNIMNDEFLWFNTTKKKPLVFVKLAPDLNQ----EQKKE-IADVLLETNIDGMIISNTTTQ 308 (415)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCSCHHHHCCSSSSSCCEEEEEECSCCCH----HHHHH-HHHHHHHHTCSEEEECCCBSC
T ss_pred HHHHHHHHHHHHHHHhhcccccccccccccccCCCCCeEEEEecCCCCH----HHHHH-HHHHHHHcCCcEEEEeCCCcc
Confidence 9999999999875 2689 99999998754 23333 566778899999999987542
Q ss_pred ----------cCCCCcCCcCCCCCccHHHHHHHHhcCC-CceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhC-Cchh
Q 020423 239 ----------LNGISPAENRTIPPLKYEYYYALLRDFP-DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN-PWYT 306 (326)
Q Consensus 239 ----------~~g~~~~~~~~~~~~~~~~i~~i~~~~~-~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~d-P~l~ 306 (326)
.+|+++ ..+.+..++.++++++... ++|||++|||.|++|+.++++.|||+|||||+++.+ |++
T Consensus 309 r~dl~~~~~~~GGlSG---~a~~p~al~~I~~v~~~v~~~iPIIg~GGI~s~eDa~e~l~aGAd~VqIgra~l~~GP~~- 384 (415)
T 3i65_A 309 INDIKSFENKKGGVSG---AKLKDISTKFICEMYNYTNKQIPIIASGGIFSGLDALEKIEAGASVCQLYSCLVFNGMKS- 384 (415)
T ss_dssp CCCCGGGTTCCSEEEE---GGGHHHHHHHHHHHHHHTTTCSCEEECSSCCSHHHHHHHHHHTEEEEEESHHHHHHGGGH-
T ss_pred cccccccccccCCcCC---ccchHHHHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcCCCEEEEcHHHHhcCHHH-
Confidence 123322 1122334577888877643 799999999999999999999999999999999988 995
Q ss_pred HHhHHHh
Q 020423 307 LGHVDTA 313 (326)
Q Consensus 307 ~~~i~~~ 313 (326)
.+++.+.
T Consensus 385 ~~~i~~~ 391 (415)
T 3i65_A 385 AVQIKRE 391 (415)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444443
|
| >3tjx_A Dihydroorotate dehydrogenase; PYRD, dhodh, lmdhodh, oxidored mutation H174A; HET: FMN; 1.64A {Leishmania major} PDB: 3gz3_A* 3gye_A* 3tro_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=7.3e-22 Score=187.53 Aligned_cols=237 Identities=15% Similarity=0.125 Sum_probs=155.3
Q ss_pred cccccCeecCCcEEEccCC-CCChHHHHHHHHHcCCCcEEEecceeeccccc-------------------cccchhhhh
Q 020423 59 AEMVARQYLPPWFSVAPMM-DWTDNHYRTLARLISKHAWLYTEMLAAETIIY-------------------QQGNLDRFL 118 (326)
Q Consensus 59 p~~ig~~~l~nrivlAPM~-~~s~~~~r~~~~~~Gg~gli~te~~~~~~~~~-------------------~~~~~~~~~ 118 (326)
..++.|+++|||+++|.-. +.+...+..+. .. |+|.+.+..++.++..- ++...+.++
T Consensus 38 ~v~~~Gl~f~NPvglAaG~~~~~~e~~~~l~-~~-G~G~v~~~tvt~~pq~GNp~PR~~~l~~~~iN~~G~~n~G~~~~~ 115 (354)
T 3tjx_A 38 QVNLLNNTFANPFMNAAGVMCTTTEELVAMT-ES-ASGSLVSKSCTPALREGNPTPRYQALPLGSINSMGLPNNGFDFYL 115 (354)
T ss_dssp CEEETTEEESSSEEECTTSSCSSHHHHHHHH-HS-SCSCEEEEEECSSCBCCSCSCCEEEETTEEEECCCCCBCCHHHHH
T ss_pred eEEECCEEcCCCcEEccCCCCCCHHHHHHHH-Hc-CCCEEEeCCcCcccccCCCCCeEEEcccccccccccCCHHHHHHH
Confidence 4788999999999999632 33333444443 33 58888887776553210 111122222
Q ss_pred h-----cCCCCCcEEEEecCCCHHHHHHHHHHHHHC---CCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHH
Q 020423 119 A-----FSPEQHPIVLQIGGSNLDNLAKATELANAY---NYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 190 (326)
Q Consensus 119 ~-----~~~~~~piivQL~g~~~~~f~~aA~~a~~a---G~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr 190 (326)
+ ......|+++|+.+.+++++.+.++++.++ ++|.||||++||+.. -|..+..+++.+.+++++++
T Consensus 116 ~~~~~~~~~~~~pvivsi~g~~~~~~~~~~~~~~~~~~~~ad~ielNiScPn~~------g~~~l~~~~~~~~~i~~~v~ 189 (354)
T 3tjx_A 116 AYAAEQHDYGKKPLFLSMSGLSMRENVEMCKRLAAVATEKGVILELNLSCPNVP------GKPQVAYDFDAMRQCLTAVS 189 (354)
T ss_dssp HHHHHTCCTTTCCEEEEECCSSHHHHHHHHHHHHHHHHHHCCEEEEECC---------------CTTSHHHHHHHHHHHH
T ss_pred HHHHHhhccCCceEEEEEecCChHHHHHHHHHHHHhhhcCCCEEEeeeCCCCCc------chhhhccCHHHHHHHHHHHH
Confidence 1 233467999999999999988888776653 689999999999853 14566688999999999999
Q ss_pred hcCCCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEec----------CCc--------ccCCCCcCCcCCCCC
Q 020423 191 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHS----------RKA--------LLNGISPAENRTIPP 252 (326)
Q Consensus 191 ~~~~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~----------~~~--------~~~g~~~~~~~~~~~ 252 (326)
+.+..|+.+|+++++++. ...... ..+.+..+++.+..-. ++. ..+|+++ +...+
T Consensus 190 ~~~~~pv~vK~~p~~~~~-~~~~~~---~~~~~~~~~~~i~~i~t~~~~~~id~~~~~~~~~~~~~~GGlSG---~~~~~ 262 (354)
T 3tjx_A 190 EVYPHSFGVKMPPYFDFA-AFDAAA---EILNEFPKVQFITCINSIGNGLVIDAETESVVIKPKQGFGGLGG---RYVLP 262 (354)
T ss_dssp HHCCSCEEEEECCCCSHH-HHHHHH---HHHHTCTTEEEEEECCCEEEEECEETTTTEESCSGGGGEEEEEG---GGGHH
T ss_pred HHhhcccccccCCCCCch-hHHHHH---HHHHhhcccchhheecccccccccccccccccccCcccccccCc---hhhHH
Confidence 999999999999987542 122221 2222334555554321 110 1123333 12223
Q ss_pred ccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHH-hCCchhHHhH
Q 020423 253 LKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAY-QNPWYTLGHV 310 (326)
Q Consensus 253 ~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall-~dP~l~~~~i 310 (326)
...+.++++.+...++|||++|||.|++|+.+++..|||+|||||+++ .+|+++.+..
T Consensus 263 ~a~~~v~~~~~~~~~~pIIg~GGI~s~~Da~e~i~aGAs~Vqv~Ta~~y~GP~~~~~I~ 321 (354)
T 3tjx_A 263 TALANINAFYRRCPGKLIFGCGGVYTGEDAFLHVLAGASMVQVGTALQEEGPSIFERLT 321 (354)
T ss_dssp HHHHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHHHTEEEEEECHHHHHHCTTHHHHHH
T ss_pred HHHHHHHHHHHhcCCCcEEEeCCcCCHHHHHHHHHcCCCEEEEChhhhhcCchHHHHHH
Confidence 335567777777778999999999999999999999999999999975 6899654433
|
| >2nli_A Lactate oxidase; flavoenzyme, FMN, D-lactate, oxidoreducta; HET: FMN; 1.59A {Aerococcus viridans} PDB: 2zfa_A* 2du2_A* 2e77_A* 2j6x_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.9e-21 Score=185.22 Aligned_cols=216 Identities=15% Similarity=0.130 Sum_probs=157.8
Q ss_pred ccccccCeecCCcEEEccCC--CCC----hHHHHHHHHHcCCCcEEEecceeeccccccccchhhhhhcCCCCCcEEEEe
Q 020423 58 KAEMVARQYLPPWFSVAPMM--DWT----DNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQI 131 (326)
Q Consensus 58 ~p~~ig~~~l~nrivlAPM~--~~s----~~~~r~~~~~~Gg~gli~te~~~~~~~~~~~~~~~~~~~~~~~~~piivQL 131 (326)
...++.|.++++|+++|||+ +.+ +..++..+++.| ++++++++.+ ..+ +.... ...+.|+.+||
T Consensus 70 ~st~i~G~~l~~Pi~iAPma~~g~~~~~~e~~la~aa~~~G-~~~~~s~~~s-~~l-------e~v~~-~~~~~~~~~QL 139 (368)
T 2nli_A 70 TSTEILGHKIKAPFIMAPIAAHGLAHTTKEAGTARAVSEFG-TIMSISAYSG-ATF-------EEISE-GLNGGPRWFQI 139 (368)
T ss_dssp CCEEETTEEESSSEEECCCSCGGGTCTTHHHHHHHHHHHHT-CCEEECTTCS-SCH-------HHHHH-HHTTCCEEEEE
T ss_pred cceEECCEecCCceeecchhhccCCCcHHHHHHHHHHHHcC-CCEEeechHh-HHH-------HHHHH-hCCCCCEEEEE
Confidence 34778899999999999998 655 467888888887 7888898775 221 11111 11357899999
Q ss_pred cC-CCHHHHHHHHHHHHHCCCCEEEecCCCCCCcc-----------------cC----CCCccccc-----cCCHHHHHH
Q 020423 132 GG-SNLDNLAKATELANAYNYDEINLNCGCPSPKV-----------------AG----HGCFGVSL-----MLDPKFVGE 184 (326)
Q Consensus 132 ~g-~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~-----------------~r----~d~yGgsl-----~~r~~~l~e 184 (326)
++ .+++...+.+++++++|++.++||++||.... .+ ....|+.+ +.++++..+
T Consensus 140 y~~~d~~~~~~~~~ra~~aG~~ai~it~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~g~~l~~~~~~~d~~~~~~ 219 (368)
T 2nli_A 140 YMAKDDQQNRDILDEAKSDGATAIILTADSTVSGNRDRDVKNKFVYPFGMPIVQRYLRGTAEGMSLNNIYGASKQKISPR 219 (368)
T ss_dssp CCBSSHHHHHHHHHHHHHTTCSCEEEESBCC---CBC--------CCSCCHHHHHHHTTSGGGC-----CTTBCSBCCHH
T ss_pred eccCCHHHHHHHHHHHHHCCCCEEEEcCCCCcccchhHHHhhcccCcchhhhhhcccccCCCCchHHhhhhccCchhhHH
Confidence 87 68888899999999999999999999986211 00 02235554 236777888
Q ss_pred HHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhc
Q 020423 185 AMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRD 264 (326)
Q Consensus 185 iv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~ 264 (326)
+++++|+.++.||.+|.- .+.++ ++.++++|+|+|+|++.... .. ...+..++.+.++++.
T Consensus 220 ~i~~lr~~~~~PvivK~v------~~~e~-----a~~a~~~Gad~I~vs~~ggr-~~-------~~g~~~~~~l~~v~~~ 280 (368)
T 2nli_A 220 DIEEIAGHSGLPVFVKGI------QHPED-----ADMAIKRGASGIWVSNHGAR-QL-------YEAPGSFDTLPAIAER 280 (368)
T ss_dssp HHHHHHHHSSSCEEEEEE------CSHHH-----HHHHHHTTCSEEEECCGGGT-SC-------SSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCEEEEcC------CCHHH-----HHHHHHcCCCEEEEcCCCcC-CC-------CCCCChHHHHHHHHHH
Confidence 999999999999999942 12222 34556899999999653210 00 1123457888777765
Q ss_pred CC-CceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhC
Q 020423 265 FP-DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN 302 (326)
Q Consensus 265 ~~-~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~d 302 (326)
.. ++|||++|||++++|+.+++..|||+|+|||+++..
T Consensus 281 v~~~ipVia~GGI~~g~D~~kalalGAd~V~iGr~~l~~ 319 (368)
T 2nli_A 281 VNKRVPIVFDSGVRRGEHVAKALASGADVVALGRPVLFG 319 (368)
T ss_dssp HTTSSCEEECSSCCSHHHHHHHHHTTCSEEEECHHHHHH
T ss_pred hCCCCeEEEECCCCCHHHHHHHHHcCCCEEEECHHHHHH
Confidence 43 699999999999999999999999999999998865
|
| >2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics, oxidoreductase, flavoprotein; HET: FMN; 1.70A {Streptococcus pneumoniae} PDB: 2z6j_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.9e-21 Score=183.07 Aligned_cols=191 Identities=13% Similarity=0.028 Sum_probs=145.9
Q ss_pred ecCCcEEEccCCCCChHHHHHHHHHcCCCcEEEecceeeccccccccchhhhhhcCCCCCcEEEEecCCCHHHHHHHHHH
Q 020423 66 YLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSNLDNLAKATEL 145 (326)
Q Consensus 66 ~l~nrivlAPM~~~s~~~~r~~~~~~Gg~gli~te~~~~~~~~~~~~~~~~~~~~~~~~~piivQL~g~~~~~f~~aA~~ 145 (326)
.+++||++|||.++++..++..+.+.||+|++.+++++.+.+....+.++++ .+.|+.+|++..+++ |.+.++.
T Consensus 10 ~~~~Pii~apM~g~s~~~la~av~~aG~lG~i~~~~~~~~~~~~~i~~i~~~-----~~~p~gvnl~~~~~~-~~~~~~~ 83 (332)
T 2z6i_A 10 KIDYPIFQGGMAWVADGDLAGAVSKAGGLGIIGGGNAPKEVVKANIDKIKSL-----TDKPFGVNIMLLSPF-VEDIVDL 83 (332)
T ss_dssp TCSSSEEECCCTTTCCHHHHHHHHHHTSBEEEECTTCCHHHHHHHHHHHHHH-----CCSCEEEEECTTSTT-HHHHHHH
T ss_pred CCCCCEEeCCCCCCCcHHHHHHHHhCCCcEEeCCCCCCHHHHHHHHHHHHHh-----cCCCEEEEecCCCCC-HHHHHHH
Confidence 3789999999999999999998888898999998876655432222222222 357999999885543 7888999
Q ss_pred HHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHHHHhhhC
Q 020423 146 ANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLS 225 (326)
Q Consensus 146 a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~ 225 (326)
+.++|+|+|++|+++|. ++++.+++ .+.|+.+|+. +.++ ++.+++.
T Consensus 84 a~~~g~d~V~~~~g~p~---------------------~~i~~l~~-~g~~v~~~v~-------~~~~-----a~~~~~~ 129 (332)
T 2z6i_A 84 VIEEGVKVVTTGAGNPS---------------------KYMERFHE-AGIIVIPVVP-------SVAL-----AKRMEKI 129 (332)
T ss_dssp HHHTTCSEEEECSSCGG---------------------GTHHHHHH-TTCEEEEEES-------SHHH-----HHHHHHT
T ss_pred HHHCCCCEEEECCCChH---------------------HHHHHHHH-cCCeEEEEeC-------CHHH-----HHHHHHc
Confidence 99999999999998762 24555655 3889998862 2222 2345679
Q ss_pred CccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhCCch
Q 020423 226 PTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 305 (326)
Q Consensus 226 Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~dP~l 305 (326)
|+|+|.+++... +|..+ ....|+++.++++.. ++|||++|||.+++++.++++.|||+|++||+++.+|+.
T Consensus 130 GaD~i~v~g~~~--GG~~g------~~~~~~ll~~i~~~~-~iPViaaGGI~~~~~~~~al~~GAdgV~vGs~~l~~~e~ 200 (332)
T 2z6i_A 130 GADAVIAEGMEA--GGHIG------KLTTMTLVRQVATAI-SIPVIAAGGIADGEGAAAGFMLGAEAVQVGTRFVVAKES 200 (332)
T ss_dssp TCSCEEEECTTS--SEECC------SSCHHHHHHHHHHHC-SSCEEEESSCCSHHHHHHHHHTTCSEEEECHHHHTBTTC
T ss_pred CCCEEEEECCCC--CCCCC------CccHHHHHHHHHHhc-CCCEEEECCCCCHHHHHHHHHcCCCEEEecHHHhcCccc
Confidence 999999997642 23221 123578888887765 999999999999999999999999999999999999974
|
| >1p0k_A Isopentenyl-diphosphate delta-isomerase; terpene biosynthesis, dimethylallyl diphosphate, flavoprotein; 1.90A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1p0n_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=5.6e-21 Score=181.09 Aligned_cols=220 Identities=12% Similarity=0.069 Sum_probs=147.0
Q ss_pred cccccCeecCCcEEEccCCCCC-------hHHHHHHHHHcCCCcEEEecceeeccccccccc--hhhhhhcCCCCCcEEE
Q 020423 59 AEMVARQYLPPWFSVAPMMDWT-------DNHYRTLARLISKHAWLYTEMLAAETIIYQQGN--LDRFLAFSPEQHPIVL 129 (326)
Q Consensus 59 p~~ig~~~l~nrivlAPM~~~s-------~~~~r~~~~~~Gg~gli~te~~~~~~~~~~~~~--~~~~~~~~~~~~piiv 129 (326)
+.++.|.+++||+++|||++.+ +..++..+++.| +++.++++... ..+... .-++++....+.|+++
T Consensus 46 ~~~i~g~~~~~P~~iApm~g~~~~~~~~~~~~~a~aa~~~G-~~~~~~~~~~~---l~~~~~~~~~~~~~~~~~~~pv~~ 121 (349)
T 1p0k_A 46 STKIGELSSSSPIFINAMTGGGGKLTYEINKSLARAASQAG-IPLAVGSQMSA---LKDPSERLSYEIVRKENPNGLIFA 121 (349)
T ss_dssp CEEETTEEESCSEEEECCCCSCHHHHHHHHHHHHHHHHHHT-CCEECCCCTTT---TTCHHHHHHHHHHHHHCSSSCEEE
T ss_pred eeEECCcccCCceEEcCccccchhhhhHHHHHHHHHHHHcC-CcEEeccchhc---ccCcccccceehhhhhCCCceeEE
Confidence 4678999999999999999988 667777777776 77777776542 111111 1111121235789999
Q ss_pred Eec-CCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHH--HHHHHHHHHhcCCCcEEEEec-cCC
Q 020423 130 QIG-GSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKF--VGEAMSVIAANTNVPVSVKCR-IGV 205 (326)
Q Consensus 130 QL~-g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~--l~eiv~avr~~~~~pv~vK~r-~g~ 205 (326)
|+. +.+++.+.+ .++++|+|+||||++||+.... . .| ++++ +.++++++|+.++.||.+|.. .++
T Consensus 122 ~i~~~~~~~~~~~---~~~~~gad~i~i~~~~~~~~~~--~-~~-----~~~~~~~~~~i~~vr~~~~~Pv~vK~~~~~~ 190 (349)
T 1p0k_A 122 NLGSEATAAQAKE---AVEMIGANALQIHLNVIQEIVM--P-EG-----DRSFSGALKRIEQICSRVSVPVIVKEVGFGM 190 (349)
T ss_dssp EEETTCCHHHHHH---HHHHTTCSEEEEEECTTTTC----------------CTTHHHHHHHHHHHCSSCEEEEEESSCC
T ss_pred eecCCCCHHHHHH---HHHhcCCCeEEecccchhhhcC--C-CC-----CcchHHHHHHHHHHHHHcCCCEEEEecCCCC
Confidence 998 678776654 3566899999999999974321 1 12 3444 788999999989999999984 333
Q ss_pred CCCccHHHHHHHHHHHhhhCCccEEEE--ecCCccc-----CCCCcC-CcCCCCCccHHHHHHHHhcCCCceEEEeCCCC
Q 020423 206 DDHDSYNQLCDFIYKVSSLSPTRHFII--HSRKALL-----NGISPA-ENRTIPPLKYEYYYALLRDFPDLTFTLNGGIN 277 (326)
Q Consensus 206 ~~~~~~~e~~~~ia~~le~~Gvd~I~v--~~~~~~~-----~g~~~~-~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~ 277 (326)
+ .++ ++.++++|+|+|++ ||++... ...... ......+..++.+.++.+...++|||++|||.
T Consensus 191 ~----~~~-----a~~a~~~Gad~I~v~~~ggt~~~~~e~~r~~~~~~~~~~~g~~~~~~l~~v~~~~~~ipvia~GGI~ 261 (349)
T 1p0k_A 191 S----KAS-----AGKLYEAGAAAVDIGGYGGTNFSKIENLRRQRQISFFNSWGISTAASLAEIRSEFPASTMIASGGLQ 261 (349)
T ss_dssp C----HHH-----HHHHHHHTCSEEEEEC---------------CCGGGGTTCSCCHHHHHHHHHHHCTTSEEEEESSCC
T ss_pred C----HHH-----HHHHHHcCCCEEEEcCCCCcchhhHHHhhcccchhhhhccCccHHHHHHHHHHhcCCCeEEEECCCC
Confidence 2 221 33456789999999 4443210 000000 00011223467777777655589999999999
Q ss_pred CHHHHHHHHHhCCChhhhhHHHHhC
Q 020423 278 TVDEVNAALRKGAHHVMVGRAAYQN 302 (326)
Q Consensus 278 s~~da~~~l~~GaD~V~iGRall~d 302 (326)
+++|+.+++..|||+|++||+++..
T Consensus 262 ~~~d~~k~l~~GAd~V~iG~~~l~~ 286 (349)
T 1p0k_A 262 DALDVAKAIALGASCTGMAGHFLKA 286 (349)
T ss_dssp SHHHHHHHHHTTCSEEEECHHHHHH
T ss_pred CHHHHHHHHHcCCCEEEEcHHHHHH
Confidence 9999999999999999999999875
|
| >1gox_A (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoreductase (oxygen(A)); HET: FMN; 2.00A {Spinacia oleracea} SCOP: c.1.4.1 PDB: 1gyl_A* 1al8_A* 1al7_A* 2cdh_0 | Back alignment and structure |
|---|
Probab=99.84 E-value=6.8e-20 Score=174.87 Aligned_cols=214 Identities=14% Similarity=0.146 Sum_probs=152.6
Q ss_pred ccccccCeecCCcEEEccCCCCChHH-------HHHHHHHcCCCcEEEecceeeccccccccchhhhhhcCCCCCcEEEE
Q 020423 58 KAEMVARQYLPPWFSVAPMMDWTDNH-------YRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 130 (326)
Q Consensus 58 ~p~~ig~~~l~nrivlAPM~~~s~~~-------~r~~~~~~Gg~gli~te~~~~~~~~~~~~~~~~~~~~~~~~~piivQ 130 (326)
...+|.|.++++|+++||| ++++.. ++..+++.| ++++++++.+. .++..... .+.+..+|
T Consensus 61 ~~t~i~G~~~~~Pi~iAPm-g~~~l~~~~~e~a~a~aa~~~G-~~~~~s~~~~~--------~ieev~~~--~~~~~~~Q 128 (370)
T 1gox_A 61 MTTTILGFKISMPIMIAPT-AMQKMAHPEGEYATARAASAAG-TIMTLSSWATS--------SVEEVAST--GPGIRFFQ 128 (370)
T ss_dssp CCEEETTEEESSSEEECCC-SCGGGTCTTHHHHHHHHHHHTT-CCEEECTTCSS--------CHHHHHTT--CCCCEEEE
T ss_pred CceEECCcccCCceeEccc-chhhhccchHHHHHHHHHHHcC-CCeeccCCCCC--------CHHHHHhh--cCCCceEE
Confidence 3477889999999999999 655443 777788876 78888887642 12222211 12689999
Q ss_pred ec-CCCHHHHHHHHHHHHHCCCCEEEecCCCCCCc---------------c----cCC-------CCccccc------cC
Q 020423 131 IG-GSNLDNLAKATELANAYNYDEINLNCGCPSPK---------------V----AGH-------GCFGVSL------ML 177 (326)
Q Consensus 131 L~-g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~---------------~----~r~-------d~yGgsl------~~ 177 (326)
|+ +.+++...+.+++++++|++.++|+++||..- . ... ..-|..+ +.
T Consensus 129 Ly~~~d~~~~~~~~~~a~~~G~~ai~it~d~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~~~v~~~~ 208 (370)
T 1gox_A 129 LYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPFLTLKNFEGIDLGKMDKANDSGLSSYVAGQI 208 (370)
T ss_dssp ECCBSSHHHHHHHHHHHHHTTCCEEEEECSCSSCCCCHHHHHTTCCCCTTCCCGGGSSSCCC---------HHHHHHHTB
T ss_pred EecCCCchHHHHHHHHHHHCCCCEEEEeCCCCcccccHHHHHhccCCCcccchhhhhhhhhhccccccCccHHHHHHhhc
Confidence 96 77888888999999999999999999998641 0 000 0113332 33
Q ss_pred CHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHH
Q 020423 178 DPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEY 257 (326)
Q Consensus 178 r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~ 257 (326)
++++..+.++++++.++.|+.+|.... .++ ++.+.++|+|+|+|++.... . . + ..+..++.
T Consensus 209 ~~~~~~~~i~~l~~~~~~pv~vK~~~~------~e~-----a~~a~~~Gad~I~vs~~ggr-~-~---~---~~~~~~~~ 269 (370)
T 1gox_A 209 DRSLSWKDVAWLQTITSLPILVKGVIT------AED-----ARLAVQHGAAGIIVSNHGAR-Q-L---D---YVPATIMA 269 (370)
T ss_dssp CTTCCHHHHHHHHHHCCSCEEEECCCS------HHH-----HHHHHHTTCSEEEECCGGGT-S-S---T---TCCCHHHH
T ss_pred CccchHHHHHHHHHHhCCCEEEEecCC------HHH-----HHHHHHcCCCEEEECCCCCc-c-C---C---CcccHHHH
Confidence 555566789999999999999997642 222 23456799999999542110 0 0 1 11345788
Q ss_pred HHHHHhcCC-CceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhC
Q 020423 258 YYALLRDFP-DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN 302 (326)
Q Consensus 258 i~~i~~~~~-~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~d 302 (326)
+.++.+... ++|||++|||.+++|+.+++..|||+|++||+++..
T Consensus 270 l~~v~~~~~~~ipvia~GGI~~~~D~~k~l~~GAdaV~iGr~~l~~ 315 (370)
T 1gox_A 270 LEEVVKAAQGRIPVFLDGGVRRGTDVFKALALGAAGVFIGRPVVFS 315 (370)
T ss_dssp HHHHHHHTTTSSCEEEESSCCSHHHHHHHHHHTCSEEEECHHHHHH
T ss_pred HHHHHHHhCCCCEEEEECCCCCHHHHHHHHHcCCCEEeecHHHHHH
Confidence 888877653 799999999999999999999999999999999864
|
| >1kbi_A Cytochrome B2, L-LCR; flavocytochrome B2, electron transfer, oxidoreductase; HET: HEM FMN; 2.30A {Saccharomyces cerevisiae} SCOP: c.1.4.1 d.120.1.1 PDB: 1fcb_A* 1lco_A* 1ldc_A* 1sze_A* 2oz0_A* 1szf_A* 1szg_A* 1ltd_A* 1kbj_A* 1qcw_A* 3ks0_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=1.2e-19 Score=179.38 Aligned_cols=218 Identities=11% Similarity=0.071 Sum_probs=155.4
Q ss_pred ccccccCeecCCcEEEccCCC---C----ChHHHHHHHHH--cCCCcEEEecceeeccccccccchhhhhhcC-CCCCcE
Q 020423 58 KAEMVARQYLPPWFSVAPMMD---W----TDNHYRTLARL--ISKHAWLYTEMLAAETIIYQQGNLDRFLAFS-PEQHPI 127 (326)
Q Consensus 58 ~p~~ig~~~l~nrivlAPM~~---~----s~~~~r~~~~~--~Gg~gli~te~~~~~~~~~~~~~~~~~~~~~-~~~~pi 127 (326)
...+|.|.++++|+++|||++ . ++..++..+++ .| ++++++++.... .+...... ..+.+.
T Consensus 179 ~st~i~G~~l~~Pi~iAPma~~~l~~~~~~e~alaraA~~~~~G-~~~~~s~~a~~s--------~e~v~~~~~~~~~~~ 249 (511)
T 1kbi_A 179 ISTDMLGSHVDVPFYVSATALCKLGNPLEGEKDVARGCGQGVTK-VPQMISTLASCS--------PEEIIEAAPSDKQIQ 249 (511)
T ss_dssp CCEEETTEEESSSEEECCCSCGGGTCTTTTHHHHHHHHHSSSSC-CCEEECTTCSSC--------HHHHHHTCCCSSCCE
T ss_pred CccccCCccCCCCeEeccchhccccChhhHHHHHHHHHHHhCCC-eeEEeCCcccCC--------HHHHHhhcCCCCCCe
Confidence 357888999999999999986 3 35667777776 65 788888873311 11111112 235789
Q ss_pred EEEec-CCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcc----------------c-----CCCCccc--ccc---CCHH
Q 020423 128 VLQIG-GSNLDNLAKATELANAYNYDEINLNCGCPSPKV----------------A-----GHGCFGV--SLM---LDPK 180 (326)
Q Consensus 128 ivQL~-g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~----------------~-----r~d~yGg--sl~---~r~~ 180 (326)
.+||+ +.+++...+++++++++|+++|.||++||..-. . ..+.+++ .++ .+++
T Consensus 250 ~~QLy~~~d~~~~~~~~~rae~aG~~al~itvd~p~~g~R~~~~r~g~~~p~~~~~~~~g~~~~~~~g~~~~~~~~~d~~ 329 (511)
T 1kbi_A 250 WYQLYVNSDRKITDDLVKNVEKLGVKALFVTVDAPSLGQREKDMKLKFSNTKAGPKAMKKTNVEESQGASRALSKFIDPS 329 (511)
T ss_dssp EEEECCCSSHHHHHHHHHHHHHHTCSCEEEECSCSSCCCCHHHHHHHHTTCC-------CCCCSSCCCGGGGCBTTBCTT
T ss_pred EEEEeecCCHHHHHHHHHHHHHcCCCEEEEeCCCCCccccHHHHhccCCCCcccccccccccccccccHHHHHhhccChH
Confidence 99998 788999999999999999999999999886210 0 0122222 122 4677
Q ss_pred HHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHH
Q 020423 181 FVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYA 260 (326)
Q Consensus 181 ~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~ 260 (326)
+..++++++|+.++.||.+|.-. +.++ ++.++++|+|+|+|++... ... + ..+..++.+.+
T Consensus 330 ~~~~~i~~lr~~~~~PvivKgv~------~~e~-----A~~a~~aGad~I~vs~hgG----~~~-d---~~~~~~~~l~~ 390 (511)
T 1kbi_A 330 LTWKDIEELKKKTKLPIVIKGVQ------RTED-----VIKAAEIGVSGVVLSNHGG----RQL-D---FSRAPIEVLAE 390 (511)
T ss_dssp CCHHHHHHHHHHCSSCEEEEEEC------SHHH-----HHHHHHTTCSEEEECCTTT----TSS-T---TCCCHHHHHHH
T ss_pred hHHHHHHHHHHHhCCcEEEEeCC------CHHH-----HHHHHHcCCCEEEEcCCCC----ccC-C---CCCchHHHHHH
Confidence 77888999999999999999322 1222 3455689999999965321 100 0 11234676666
Q ss_pred HHhcC------CCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhCC
Q 020423 261 LLRDF------PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNP 303 (326)
Q Consensus 261 i~~~~------~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~dP 303 (326)
+.+.. .++|||++|||++++|+.+++..|||+|+|||+++...
T Consensus 391 v~~~v~~~~~~~~ipVia~GGI~~g~Dv~kaLalGAdaV~iGr~~l~~~ 439 (511)
T 1kbi_A 391 TMPILEQRNLKDKLEVFVDGGVRRGTDVLKALCLGAKGVGLGRPFLYAN 439 (511)
T ss_dssp HHHHHHTTTCBTTBEEEEESSCCSHHHHHHHHHHTCSEEEECHHHHHHH
T ss_pred HHHHHHhhccCCCcEEEEECCCCCHHHHHHHHHcCCCEEEECHHHHHHH
Confidence 65543 37999999999999999999999999999999998654
|
| >2nzl_A Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, GOX, GOX1, structural genomics, structural genom consortium, SGC, oxidoreductase; HET: FMN; 1.35A {Homo sapiens} PDB: 2rdu_A* 2rdt_A* 2rdw_A* 2w0u_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=1.1e-19 Score=174.43 Aligned_cols=216 Identities=14% Similarity=0.127 Sum_probs=152.4
Q ss_pred ccccccCeecCCcEEEccCCCCCh-------HHHHHHHHHcCCCcEEEecceeeccccccccchhhhhhcCCCCCcEEEE
Q 020423 58 KAEMVARQYLPPWFSVAPMMDWTD-------NHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 130 (326)
Q Consensus 58 ~p~~ig~~~l~nrivlAPM~~~s~-------~~~r~~~~~~Gg~gli~te~~~~~~~~~~~~~~~~~~~~~~~~~piivQ 130 (326)
...+|.|.++++|+++||| ++++ ..++..+++.| ++++++++.+ ..+ +.... ...+.|+.+|
T Consensus 84 ~st~i~G~~l~~Pi~iAPm-g~~~l~~~~~e~~laraA~~~G-~~~~~s~~~s-~~l-------e~v~~-~~~~~~~~~Q 152 (392)
T 2nzl_A 84 LSTSVLGQRVSMPICVGAT-AMQRMAHVDGELATVRACQSLG-TGMMLSSWAT-SSI-------EEVAE-AGPEALRWLQ 152 (392)
T ss_dssp CCEEETTEEESSSEEECCC-SCGGGTSTTHHHHHHHHHHHHT-CEEEECTTCS-SCH-------HHHHH-HCTTSEEEEE
T ss_pred cceEECCEecCCceEeccc-cccccccchHHHHHHHHHHHcC-CCeeccchHH-HHH-------HHHHH-hcCCCcEEEE
Confidence 3477889999999999999 5433 34777788877 7888888764 111 11111 1135789999
Q ss_pred ecC-CCHHHHHHHHHHHHHCCCCEEEecCCCCCC---------------cc-cCC-C------------Cccc---cccC
Q 020423 131 IGG-SNLDNLAKATELANAYNYDEINLNCGCPSP---------------KV-AGH-G------------CFGV---SLML 177 (326)
Q Consensus 131 L~g-~~~~~f~~aA~~a~~aG~d~Iein~g~P~~---------------~~-~r~-d------------~yGg---sl~~ 177 (326)
|++ .+++...+.+++++++|++.+.|+++||.. .. .++ . .-|. .++.
T Consensus 153 Ly~~~d~~~~~~~~~ra~~~G~~al~itvd~p~~g~R~~d~r~~~~lp~~~~~~n~~~~~~~~~p~~~~~~g~~~~~~~~ 232 (392)
T 2nzl_A 153 LYIYKDREVTKKLVRQAEKMGYKAIFVTVDTPYLGNRLDDVRNRFKLPPQLRMKNFETSTLSFSPEENFGDDSGLAAYVA 232 (392)
T ss_dssp ECCBSSHHHHHHHHHHHHHTTCCCEEEECSCSSCCCCHHHHHHTCCCCTTCCCTTC-----------------CHHHHHH
T ss_pred EEecCCHHHHHHHHHHHHHCCCCEEEEeCCCCCccchhHhHhhccCCccccchhhhhhhhcccCccccccCcchHHHHHh
Confidence 987 688888999999999999999999999874 11 000 0 0011 1222
Q ss_pred ---CHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCcc
Q 020423 178 ---DPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLK 254 (326)
Q Consensus 178 ---r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~ 254 (326)
++++..+.++++++.++.||.+|.-. +.++ ++.++++|+|+|+|++..... ....+..
T Consensus 233 ~~~d~~~~~~~i~~lr~~~~~PvivKgv~------~~e~-----A~~a~~aGad~I~vs~~ggr~--------~~~g~~~ 293 (392)
T 2nzl_A 233 KAIDPSISWEDIKWLRRLTSLPIVAKGIL------RGDD-----AREAVKHGLNGILVSNHGARQ--------LDGVPAT 293 (392)
T ss_dssp HHBCTTCCHHHHHHHC--CCSCEEEEEEC------CHHH-----HHHHHHTTCCEEEECCGGGTS--------STTCCCH
T ss_pred hcCChHHHHHHHHHHHHhhCCCEEEEecC------CHHH-----HHHHHHcCCCEEEeCCCCCCc--------CCCCcCh
Confidence 66677888999999999999999431 2222 345568999999997543210 0112345
Q ss_pred HHHHHHHHhcCC-CceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhCC
Q 020423 255 YEYYYALLRDFP-DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNP 303 (326)
Q Consensus 255 ~~~i~~i~~~~~-~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~dP 303 (326)
++.+.++++... ++|||++|||++++|+.+++..|||+|++||+++...
T Consensus 294 ~~~l~~v~~av~~~ipVia~GGI~~g~Dv~kalalGAd~V~iGr~~l~~~ 343 (392)
T 2nzl_A 294 IDVLPEIVEAVEGKVEVFLDGGVRKGTDVLKALALGAKAVFVGRPIVWGL 343 (392)
T ss_dssp HHHHHHHHHHHTTSSEEEECSSCCSHHHHHHHHHTTCSEEEECHHHHHHH
T ss_pred HHHHHHHHHHcCCCCEEEEECCCCCHHHHHHHHHhCCCeeEECHHHHHHH
Confidence 777877776543 6999999999999999999999999999999998653
|
| >1vcf_A Isopentenyl-diphosphate delta-isomerase; TIM barrel, structural genomics, riken structural genomics/P initiative, RSGI; HET: FMN; 2.60A {Thermus thermophilus} SCOP: c.1.4.1 PDB: 1vcg_A* 3dh7_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=3.9e-19 Score=167.32 Aligned_cols=221 Identities=14% Similarity=0.090 Sum_probs=142.3
Q ss_pred ccccccCeecCCcEEEccCCCCCh------HHHHHHHHHcCCCcEEEecceeeccccccccchhhhhhc--CCCCCcEE-
Q 020423 58 KAEMVARQYLPPWFSVAPMMDWTD------NHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAF--SPEQHPIV- 128 (326)
Q Consensus 58 ~p~~ig~~~l~nrivlAPM~~~s~------~~~r~~~~~~Gg~gli~te~~~~~~~~~~~~~~~~~~~~--~~~~~pii- 128 (326)
...++++.++++|+++|||++.++ ..++..+++.| .+++++++.+. +. ... ...++.+ ...+.|++
T Consensus 48 ~~~~i~g~~l~~P~~iapm~g~~~~~~~~~~~la~~a~~~G-~~~~~~~~~~~--le-~~~-~~~~~ql~~~~~d~pv~~ 122 (332)
T 1vcf_A 48 LTTPFLGKTLKAPFLIGAMTGGEENGERINLALAEAAEALG-VGMMLGSGRIL--LE-RPE-ALRSFRVRKVAPKALLIA 122 (332)
T ss_dssp CCEEETTEEESSSEEECCCC---CCHHHHHHHHHHHHHHHT-CEEEEEECHHH--HH-CTT-THHHHCCTTTCSSSCEEE
T ss_pred cceEECCcccCCceEEeccccCCcchhHHHHHHHHHHHHcC-CCEEeCCchhc--cc-CCC-ccceEEeeccCCCceeec
Confidence 357889999999999999998654 36777788877 78888888664 21 111 1112122 22467876
Q ss_pred ----EEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEE-ecc
Q 020423 129 ----LQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVK-CRI 203 (326)
Q Consensus 129 ----vQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK-~r~ 203 (326)
.|+.+.+++.+.++++. .++|++++|..+...... .++ ...+.+.++++++|+ ++.||.+| +..
T Consensus 123 ~~~~~q~~~~~~~~~~~a~~~---~~~~a~~i~~n~~~~~~~-----~~~--~~~~~~~~~i~~vr~-~~~Pv~vK~v~~ 191 (332)
T 1vcf_A 123 NLGLAQLRRYGRDDLLRLVEM---LEADALAFHVNPLQEAVQ-----RGD--TDFRGLVERLAELLP-LPFPVMVKEVGH 191 (332)
T ss_dssp EEEGGGGGTCCHHHHHHHHHH---HTCSEEEEECCHHHHHHT-----TSC--CCCTTHHHHHHHHCS-CSSCEEEECSSS
T ss_pred ccChhhhhccChHHHHHHHhh---cCCCceeeccchHHHHhc-----CCC--ccHHHHHHHHHHHHc-CCCCEEEEecCC
Confidence 45566677887777654 367988888643211000 111 111236788999999 99999999 543
Q ss_pred CCCCCccHHHHHHHHHHHhhhCCccEEEEec--CCcc------cCC-CCcCCc-CCCCCccHHHHHHHHhcCCCceEEEe
Q 020423 204 GVDDHDSYNQLCDFIYKVSSLSPTRHFIIHS--RKAL------LNG-ISPAEN-RTIPPLKYEYYYALLRDFPDLTFTLN 273 (326)
Q Consensus 204 g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~--~~~~------~~g-~~~~~~-~~~~~~~~~~i~~i~~~~~~iPVIa~ 273 (326)
++ +.++ ++.++++|+|+|+|++ ++.+ ... ...... ....+..++.+.++++...++|||++
T Consensus 192 g~----~~e~-----a~~~~~~G~d~I~vs~~ggt~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~v~~~~~~ipvia~ 262 (332)
T 1vcf_A 192 GL----SREA-----ALALRDLPLAAVDVAGAGGTSWARVEEWVRFGEVRHPELCEIGIPTARAILEVREVLPHLPLVAS 262 (332)
T ss_dssp CC----CHHH-----HHHHTTSCCSEEECCCBTSCCHHHHHHTC--------CCTTCSCBHHHHHHHHHHHCSSSCEEEE
T ss_pred CC----CHHH-----HHHHHHcCCCEEEeCCCCCCcchhHHHhhccccchhhhHhhccccHHHHHHHHHHhcCCCeEEEE
Confidence 32 2332 3456789999999954 3210 000 000000 01122347777777766547999999
Q ss_pred CCCCCHHHHHHHHHhCCChhhhhHHHHhCC
Q 020423 274 GGINTVDEVNAALRKGAHHVMVGRAAYQNP 303 (326)
Q Consensus 274 GgI~s~~da~~~l~~GaD~V~iGRall~dP 303 (326)
|||.+++|+.+++..|||+|++||+++..+
T Consensus 263 GGI~~~~d~~kal~~GAd~V~igr~~l~~~ 292 (332)
T 1vcf_A 263 GGVYTGTDGAKALALGADLLAVARPLLRPA 292 (332)
T ss_dssp SSCCSHHHHHHHHHHTCSEEEECGGGHHHH
T ss_pred CCCCCHHHHHHHHHhCCChHhhhHHHHHHH
Confidence 999999999999999999999999999543
|
| >3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8} | Back alignment and structure |
|---|
Probab=99.78 E-value=3e-18 Score=160.87 Aligned_cols=194 Identities=10% Similarity=0.038 Sum_probs=142.7
Q ss_pred cCeecCCcEEEccCCCCChHHHHHHHHHcCCCcEEEecceeeccccccccchhhhhhcCCCCCcEEEEecCCCHHHHHHH
Q 020423 63 ARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSNLDNLAKA 142 (326)
Q Consensus 63 g~~~l~nrivlAPM~~~s~~~~r~~~~~~Gg~gli~te~~~~~~~~~~~~~~~~~~~~~~~~~piivQL~g~~~~~f~~a 142 (326)
..+.+++||++|||.++++..++..+.+.||.|++..++++++.+....+.++.. .+.|+.+|++..++ ++.+.
T Consensus 21 ~~l~~~~Pii~apM~gvs~~~la~av~~aGglG~i~~~~~~~~~l~~~i~~i~~~-----~~~p~gVnl~~~~~-~~~~~ 94 (326)
T 3bo9_A 21 DLLEIEHPILMGGMAWAGTPTLAAAVSEAGGLGIIGSGAMKPDDLRKAISELRQK-----TDKPFGVNIILVSP-WADDL 94 (326)
T ss_dssp HHHTCSSSEEECCCTTTSCHHHHHHHHHTTSBEEEECTTCCHHHHHHHHHHHHTT-----CSSCEEEEEETTST-THHHH
T ss_pred HhcCCCCCEEECCCCCCCCHHHHHHHHhCCCcEEeCCCCCCHHHHHHHHHHHHHh-----cCCCEEEEEeccCC-CHHHH
Confidence 3456889999999999999999999999999999987766544332211112211 35799999987544 35677
Q ss_pred HHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHHHHh
Q 020423 143 TELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVS 222 (326)
Q Consensus 143 A~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia~~l 222 (326)
++.+.++|+|.|.+|+++|. ++++.+++ .+.++.+++. +.++ ++.+
T Consensus 95 ~~~~~~~g~d~V~l~~g~p~---------------------~~~~~l~~-~g~~v~~~v~-------s~~~-----a~~a 140 (326)
T 3bo9_A 95 VKVCIEEKVPVVTFGAGNPT---------------------KYIRELKE-NGTKVIPVVA-------SDSL-----ARMV 140 (326)
T ss_dssp HHHHHHTTCSEEEEESSCCH---------------------HHHHHHHH-TTCEEEEEES-------SHHH-----HHHH
T ss_pred HHHHHHCCCCEEEECCCCcH---------------------HHHHHHHH-cCCcEEEEcC-------CHHH-----HHHH
Confidence 77888899999999987652 23344444 3788887652 2222 2234
Q ss_pred hhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhC
Q 020423 223 SLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN 302 (326)
Q Consensus 223 e~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~d 302 (326)
++.|+|+|.+++... +|..+ ....|+.+.++.+.. ++|||++|||.+++++.++++.|||+|++||+++..
T Consensus 141 ~~~GaD~i~v~g~~~--GG~~G------~~~~~~ll~~i~~~~-~iPviaaGGI~~~~dv~~al~~GA~gV~vGs~~~~~ 211 (326)
T 3bo9_A 141 ERAGADAVIAEGMES--GGHIG------EVTTFVLVNKVSRSV-NIPVIAAGGIADGRGMAAAFALGAEAVQMGTRFVAS 211 (326)
T ss_dssp HHTTCSCEEEECTTS--SEECC------SSCHHHHHHHHHHHC-SSCEEEESSCCSHHHHHHHHHHTCSEEEESHHHHTB
T ss_pred HHcCCCEEEEECCCC--CccCC------CccHHHHHHHHHHHc-CCCEEEECCCCCHHHHHHHHHhCCCEEEechHHHcC
Confidence 578999999998653 33322 123588888887765 899999999999999999999999999999999988
Q ss_pred Cch
Q 020423 303 PWY 305 (326)
Q Consensus 303 P~l 305 (326)
++.
T Consensus 212 ~e~ 214 (326)
T 3bo9_A 212 VES 214 (326)
T ss_dssp SSC
T ss_pred ccc
Confidence 763
|
| >3bw2_A 2-nitropropane dioxygenase; TIM barrel, oxidoreductase; HET: FMN; 2.10A {Streptomyces ansochromogenes} PDB: 3bw4_A* 3bw3_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=5.3e-18 Score=161.77 Aligned_cols=197 Identities=13% Similarity=0.110 Sum_probs=142.7
Q ss_pred CCcEEEccCCC-CChHHHHHHHHHcCCCcEEEecceeeccccccccchhhhhhcCCCCCcEEEEecCCCHH---------
Q 020423 68 PPWFSVAPMMD-WTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSNLD--------- 137 (326)
Q Consensus 68 ~nrivlAPM~~-~s~~~~r~~~~~~Gg~gli~te~~~~~~~~~~~~~~~~~~~~~~~~~piivQL~g~~~~--------- 137 (326)
+.+|++|||.+ +++..++..+.+.||.|++.+++.+++.+......++.+ .+.|+.+||+...++
T Consensus 10 ~~Pii~apMaggvs~~~la~av~~aGglG~i~~~~~s~~~l~~~i~~~~~~-----~~~p~gVnl~~~~~~~~~~~~~~~ 84 (369)
T 3bw2_A 10 PLPIVQAPMAGGVSVPQLAAAVCEAGGLGFLAAGYKTADGMYQEIKRLRGL-----TGRPFGVNVFMPQPELAESGAVEV 84 (369)
T ss_dssp SSSEEECCCTTTTSCHHHHHHHHHTTSBEEEECTTSCHHHHHHHHHHHHHH-----CCSCEEEEEECCCCCC---CHHHH
T ss_pred cCCEEeCCCCCCCCcHHHHHHHHHCCCEEEcCCCCCCHHHHHHHHHHHHHh-----CCCCeEEEEecCCCCcccHHHHHH
Confidence 77899999995 999999999999999999988888776654433333333 346899999864321
Q ss_pred -------------------------HHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhc
Q 020423 138 -------------------------NLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAAN 192 (326)
Q Consensus 138 -------------------------~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~ 192 (326)
.+.+.++.+.++|+|.|.+|+++|. .++++.+++
T Consensus 85 ~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~~~g~~~--------------------~~~i~~~~~- 143 (369)
T 3bw2_A 85 YAHQLAGEAAWYETELGDPDGGRDDGYDAKLAVLLDDPVPVVSFHFGVPD--------------------REVIARLRR- 143 (369)
T ss_dssp HHHHTHHHHHHTTCCCCCSCSCSSTTHHHHHHHHHHSCCSEEEEESSCCC--------------------HHHHHHHHH-
T ss_pred HHHHHHHHHHHcCCCcCcccccccccHHHHHHHHHhcCCCEEEEeCCCCc--------------------HHHHHHHHH-
Confidence 1456677888899999999988763 134455554
Q ss_pred CCCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCC-----CccHHHHHHHHhcCCC
Q 020423 193 TNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIP-----PLKYEYYYALLRDFPD 267 (326)
Q Consensus 193 ~~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~-----~~~~~~i~~i~~~~~~ 267 (326)
.+.++.+++. +.++ ++.+++.|+|+|.+++... +|+.+....... ...++.+.++++.. +
T Consensus 144 ~g~~v~~~v~-------t~~~-----a~~a~~~GaD~i~v~g~~~--GGh~g~~~~~~~~~~~~~~~~~~l~~i~~~~-~ 208 (369)
T 3bw2_A 144 AGTLTLVTAT-------TPEE-----ARAVEAAGADAVIAQGVEA--GGHQGTHRDSSEDDGAGIGLLSLLAQVREAV-D 208 (369)
T ss_dssp TTCEEEEEES-------SHHH-----HHHHHHTTCSEEEEECTTC--SEECCCSSCCGGGTTCCCCHHHHHHHHHHHC-S
T ss_pred CCCeEEEECC-------CHHH-----HHHHHHcCCCEEEEeCCCc--CCcCCCcccccccccccccHHHHHHHHHHhc-C
Confidence 3778877652 2332 2344579999999987642 222111000000 12378888887664 9
Q ss_pred ceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhCCch
Q 020423 268 LTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 305 (326)
Q Consensus 268 iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~dP~l 305 (326)
+|||++|||.+++++.++++.|||+|++||+++.+|+.
T Consensus 209 iPViaaGGI~~~~~~~~~l~~GAd~V~vGs~~~~~~e~ 246 (369)
T 3bw2_A 209 IPVVAAGGIMRGGQIAAVLAAGADAAQLGTAFLATDES 246 (369)
T ss_dssp SCEEEESSCCSHHHHHHHHHTTCSEEEESHHHHTSTTC
T ss_pred ceEEEECCCCCHHHHHHHHHcCCCEEEEChHHhCCccc
Confidence 99999999999999999999999999999999999985
|
| >2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=7.9e-18 Score=158.06 Aligned_cols=193 Identities=12% Similarity=0.027 Sum_probs=139.9
Q ss_pred ecCCcEEEccCCCCChHHHHHHHHHcCCCcEEEeccee-eccccccccchhhhhhcCCCCCcEEEEecCCC---HHHHHH
Q 020423 66 YLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLA-AETIIYQQGNLDRFLAFSPEQHPIVLQIGGSN---LDNLAK 141 (326)
Q Consensus 66 ~l~nrivlAPM~~~s~~~~r~~~~~~Gg~gli~te~~~-~~~~~~~~~~~~~~~~~~~~~~piivQL~g~~---~~~f~~ 141 (326)
.++++|++|||.++++..++..+.+.||.|++.+++.. ++.+....+.+++. .+.|+.+|++.+. ..++.+
T Consensus 13 ~~~~Pii~apM~gvs~~~la~av~~aGglG~i~~~~~~s~~~l~~~i~~i~~~-----~~~p~~v~l~v~~~~~~~~~~~ 87 (328)
T 2gjl_A 13 GVEHPIMQGGMQWVGRAEMAAAVANAGGLATLSALTQPSPEALAAEIARCREL-----TDRPFGVNLTLLPTQKPVPYAE 87 (328)
T ss_dssp TCSSSEEECCCTTTCSHHHHHHHHHTTSBCEEETTTSSSHHHHHHHHHHHHHH-----CSSCCEEEEEECCCSSCCCHHH
T ss_pred CCCCCEEECCCCCCCcHHHHHHHHHCCCeEEeCCCCCCCHHHHHHHHHHHHHh-----cCCCeEEEEeccccccCccHHH
Confidence 46889999999999999999999999999999877643 22222111112211 3578999998751 234677
Q ss_pred HHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHHHH
Q 020423 142 ATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKV 221 (326)
Q Consensus 142 aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia~~ 221 (326)
.++.+.++|+|.|.+|+++| .++++.+++. +.++..++. +.++ ++.
T Consensus 88 ~~~~~~~~g~d~V~~~~g~p---------------------~~~~~~l~~~-gi~vi~~v~-------t~~~-----a~~ 133 (328)
T 2gjl_A 88 YRAAIIEAGIRVVETAGNDP---------------------GEHIAEFRRH-GVKVIHKCT-------AVRH-----ALK 133 (328)
T ss_dssp HHHHHHHTTCCEEEEEESCC---------------------HHHHHHHHHT-TCEEEEEES-------SHHH-----HHH
T ss_pred HHHHHHhcCCCEEEEcCCCc---------------------HHHHHHHHHc-CCCEEeeCC-------CHHH-----HHH
Confidence 78888899999999997654 1345556554 788876642 2222 223
Q ss_pred hhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHh
Q 020423 222 SSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 301 (326)
Q Consensus 222 le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~ 301 (326)
.++.|+|+|.+++.+. +|+.+.. ....|+.+.++++.. ++||+++|||.+++++.++++.|||+|++||+++.
T Consensus 134 ~~~~GaD~i~v~g~~~--GG~~G~~----~~~~~~~l~~v~~~~-~iPviaaGGI~~~~~v~~al~~GAdgV~vGs~~~~ 206 (328)
T 2gjl_A 134 AERLGVDAVSIDGFEC--AGHPGED----DIPGLVLLPAAANRL-RVPIIASGGFADGRGLVAALALGADAINMGTRFLA 206 (328)
T ss_dssp HHHTTCSEEEEECTTC--SBCCCSS----CCCHHHHHHHHHTTC-CSCEEEESSCCSHHHHHHHHHHTCSEEEESHHHHT
T ss_pred HHHcCCCEEEEECCCC--CcCCCCc----cccHHHHHHHHHHhc-CCCEEEECCCCCHHHHHHHHHcCCCEEEECHHHHc
Confidence 4579999999987653 2332210 124588888887654 99999999999999999999999999999999999
Q ss_pred CCc
Q 020423 302 NPW 304 (326)
Q Consensus 302 dP~ 304 (326)
+|+
T Consensus 207 ~~e 209 (328)
T 2gjl_A 207 TRE 209 (328)
T ss_dssp SSS
T ss_pred Ccc
Confidence 987
|
| >1ypf_A GMP reductase; GUAC, purines, pyrimidines, nucleosides, nucleotides, nucleo nucleoside interconversions, spine, structural genomics; 1.80A {Bacillus anthracis} PDB: 2a1y_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=6.8e-18 Score=159.07 Aligned_cols=203 Identities=12% Similarity=0.065 Sum_probs=141.8
Q ss_pred cccccCeecCCcEEEccCCCCChHHHHHHHHHcCCCcEEEecceeeccccccccchhhhhh-cCCCCCcEEEEecCCCHH
Q 020423 59 AEMVARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLA-FSPEQHPIVLQIGGSNLD 137 (326)
Q Consensus 59 p~~ig~~~l~nrivlAPM~~~s~~~~r~~~~~~Gg~gli~te~~~~~~~~~~~~~~~~~~~-~~~~~~piivQL~g~~~~ 137 (326)
..++.++++++||++|||++.|+.+++..+.+.||.|++..++.. ....+++ ..+.+.++.+|+ +..++
T Consensus 37 ~t~i~g~~l~~Pi~~a~mag~s~~~la~a~~~~gg~g~~~~~~~~---------~~~~~i~~~~~~g~~v~v~~-g~~~~ 106 (336)
T 1ypf_A 37 TVTLGKHKFKLPVVPANMQTIIDERIATYLAENNYFYIMHRFQPE---------KRISFIRDMQSRGLIASISV-GVKED 106 (336)
T ss_dssp CEEETTEEESSSEEECSSTTTCCHHHHHHHHHTTCCCCCCCSSGG---------GHHHHHHHHHHTTCCCEEEE-CCSHH
T ss_pred eEEECCEEecCcEEECCCCCCChHHHHHHHHhCCCEEEecCCCCH---------HHHHHHHHHHhcCCeEEEeC-CCCHH
Confidence 356778999999999999999999998766777889988766431 1122222 223456889996 66666
Q ss_pred HHHHHHHHHHHCC--CCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHH
Q 020423 138 NLAKATELANAYN--YDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLC 215 (326)
Q Consensus 138 ~f~~aA~~a~~aG--~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~ 215 (326)
++ +.++.+.++| +|.|++|.+. | ++....++++++++.++.++.+|-.. .+.++
T Consensus 107 ~~-~~a~~~~~~g~~~~~i~i~~~~-----------G-----~~~~~~~~i~~lr~~~~~~~vi~G~v-----~s~e~-- 162 (336)
T 1ypf_A 107 EY-EFVQQLAAEHLTPEYITIDIAH-----------G-----HSNAVINMIQHIKKHLPESFVIAGNV-----GTPEA-- 162 (336)
T ss_dssp HH-HHHHHHHHTTCCCSEEEEECSS-----------C-----CSHHHHHHHHHHHHHCTTSEEEEEEE-----CSHHH--
T ss_pred HH-HHHHHHHhcCCCCCEEEEECCC-----------C-----CcHHHHHHHHHHHHhCCCCEEEECCc-----CCHHH--
Confidence 55 4567788888 9999998631 2 46678899999999986454454211 12222
Q ss_pred HHHHHHhhhCCccEEEEe--cCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChh
Q 020423 216 DFIYKVSSLSPTRHFIIH--SRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHV 293 (326)
Q Consensus 216 ~~ia~~le~~Gvd~I~v~--~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V 293 (326)
++.++++|+|.|+++ ++........ .....+...++.+.++++.. ++|||++|||.+++|+.+++..|||+|
T Consensus 163 ---A~~a~~aGad~Ivvs~hgG~~~~~~~~--~~~g~~g~~~~~l~~v~~~~-~ipVIa~GGI~~g~Dv~kalalGAdaV 236 (336)
T 1ypf_A 163 ---VRELENAGADATKVGIGPGKVCITKIK--TGFGTGGWQLAALRWCAKAA-SKPIIADGGIRTNGDVAKSIRFGATMV 236 (336)
T ss_dssp ---HHHHHHHTCSEEEECSSCSTTCHHHHH--HSCSSTTCHHHHHHHHHHTC-SSCEEEESCCCSTHHHHHHHHTTCSEE
T ss_pred ---HHHHHHcCCCEEEEecCCCceeecccc--cCcCCchhHHHHHHHHHHHc-CCcEEEeCCCCCHHHHHHHHHcCCCEE
Confidence 345567999999994 4321100000 00011111467788887765 999999999999999999999999999
Q ss_pred hhhHHHHh
Q 020423 294 MVGRAAYQ 301 (326)
Q Consensus 294 ~iGRall~ 301 (326)
++||+++.
T Consensus 237 ~iGr~~l~ 244 (336)
T 1ypf_A 237 MIGSLFAG 244 (336)
T ss_dssp EESGGGTT
T ss_pred EeChhhhc
Confidence 99999995
|
| >3sr7_A Isopentenyl-diphosphate delta-isomerase; isopentenyl pyrophosphate isomerase, TIM-barrel; 2.04A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=99.74 E-value=2.1e-17 Score=156.58 Aligned_cols=219 Identities=12% Similarity=0.047 Sum_probs=131.3
Q ss_pred ccccccCeecCCcEEEccCCCCChH------HHHHHHHHcCCCcEEEecceeeccccccccchhhh--hhcCCCCCcEEE
Q 020423 58 KAEMVARQYLPPWFSVAPMMDWTDN------HYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRF--LAFSPEQHPIVL 129 (326)
Q Consensus 58 ~p~~ig~~~l~nrivlAPM~~~s~~------~~r~~~~~~Gg~gli~te~~~~~~~~~~~~~~~~~--~~~~~~~~piiv 129 (326)
...++++.++++|++++||++.++. .++..+++.| .++...++...-. +.+. ..+ .+.. .+.+++.
T Consensus 76 ~st~i~g~~l~~Pi~iapMtgg~~~~~~in~~lA~~a~~~G-~~~~vGs~~~~le---~~~~-~~~~v~r~~-P~~~~ia 149 (365)
T 3sr7_A 76 LSTHFAGQDFDFPFYINAMTGGSQKGKEVNEKLAQVADTCG-LLFVTGSYSTALK---NPDD-TSYQVKKSR-PHLLLAT 149 (365)
T ss_dssp CCEEETTEEESSSEEEECC----CCCHHHHHHHHHHHHHHT-CCEEC----------------------------CCEEE
T ss_pred ceEEECCEEccCceEeccccCCCcchhHHHHHHHHHHHHcC-CCeeccccccccc---Cccc-cceEehhhC-CCCcEEE
Confidence 3467889999999999999987653 3777788877 7777766653211 1111 111 1112 3578889
Q ss_pred EecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCc
Q 020423 130 QIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHD 209 (326)
Q Consensus 130 QL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~ 209 (326)
+|...... .++.+.++++|+|.+++|+...+...... | ..+.+-+.+.++++++.++.||.+|. .++..
T Consensus 150 nig~~~~~--e~~~~~ve~~~adal~ihln~~qe~~~p~---G---d~~~~~~~~~I~~l~~~~~~PVivK~-vg~g~-- 218 (365)
T 3sr7_A 150 NIGLDKPY--QAGLQAVRDLQPLFLQVHINLMQELLMPE---G---EREFRSWKKHLSDYAKKLQLPFILKE-VGFGM-- 218 (365)
T ss_dssp EEETTSCH--HHHHHHHHHHCCSCEEEEECHHHHHTSSS---S---CCCCHHHHHHHHHHHHHCCSCEEEEE-CSSCC--
T ss_pred EeCCCCCH--HHHHHHHHhcCCCEEEEeccccccccCCC---C---CCcHHHHHHHHHHHHHhhCCCEEEEE-CCCCC--
Confidence 99764332 25566667789999999986432111111 1 12344577899999999999999994 34322
Q ss_pred cHHHHHHHHHHHhhhCCccEEEEecCCc--ccC--CC-----Cc-CCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCH
Q 020423 210 SYNQLCDFIYKVSSLSPTRHFIIHSRKA--LLN--GI-----SP-AENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTV 279 (326)
Q Consensus 210 ~~~e~~~~ia~~le~~Gvd~I~v~~~~~--~~~--g~-----~~-~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~ 279 (326)
+.++ ++.+.++|+|+|+|+++.. +.. .. .. .+| .......+.++.....++|||++|||+++
T Consensus 219 s~e~-----A~~l~~aGad~I~V~g~GGt~~a~ie~~r~~~~~~~~~~---g~pt~~~L~~v~~~~~~ipvia~GGI~~g 290 (365)
T 3sr7_A 219 DVKT-----IQTAIDLGVKTVDISGRGGTSFAYIENRRGGNRSYLNQW---GQTTAQVLLNAQPLMDKVEILASGGIRHP 290 (365)
T ss_dssp CHHH-----HHHHHHHTCCEEECCCBC--------------CGGGTTC---SCBHHHHHHHHGGGTTTSEEEECSSCCSH
T ss_pred CHHH-----HHHHHHcCCCEEEEeCCCCcccchhhccccccccccccc---cccHHHHHHHHHHhcCCCeEEEeCCCCCH
Confidence 2222 3455679999999976521 100 00 00 011 11123455554332347999999999999
Q ss_pred HHHHHHHHhCCChhhhhHHHHh
Q 020423 280 DEVNAALRKGAHHVMVGRAAYQ 301 (326)
Q Consensus 280 ~da~~~l~~GaD~V~iGRall~ 301 (326)
.|+.+++..|||+|++||++|.
T Consensus 291 ~Dv~KaLalGAdaV~ig~~~l~ 312 (365)
T 3sr7_A 291 LDIIKALVLGAKAVGLSRTMLE 312 (365)
T ss_dssp HHHHHHHHHTCSEEEESHHHHH
T ss_pred HHHHHHHHcCCCEEEECHHHHH
Confidence 9999999999999999999985
|
| >3vkj_A Isopentenyl-diphosphate delta-isomerase; type 2 isopentenyl diphosphate isomerase; HET: FNR; 1.70A {Sulfolobus shibatae} PDB: 2zrv_A* 2zrw_A* 2zrx_A* 2zry_A* 2zrz_A* 3b03_A* 3b04_A* 3b05_A* 3b06_A* 2zru_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=6.1e-17 Score=153.87 Aligned_cols=220 Identities=15% Similarity=0.127 Sum_probs=139.4
Q ss_pred ccccccCeecCCcEEEccCCCCChHH------HHHHHHHcCCCcEEEecceee--ccccccccchhhhhhcCCCCCcEEE
Q 020423 58 KAEMVARQYLPPWFSVAPMMDWTDNH------YRTLARLISKHAWLYTEMLAA--ETIIYQQGNLDRFLAFSPEQHPIVL 129 (326)
Q Consensus 58 ~p~~ig~~~l~nrivlAPM~~~s~~~------~r~~~~~~Gg~gli~te~~~~--~~~~~~~~~~~~~~~~~~~~~piiv 129 (326)
-..++++.++++|++.|||+|.++.+ ++..+++.| .++.+.|+... ++..+...+ ...+.. .+.|++.
T Consensus 49 ~st~~~g~~l~~Pv~ia~MtGgt~~~~~in~~la~~a~~~G-~~~~vGs~~~~l~~~~~~~s~~--~vr~~a-p~~~~~a 124 (368)
T 3vkj_A 49 TKTKFFRKEISVPVMVTGMTGGRNELGRINKIIAEVAEKFG-IPMGVGSQRVAIEKAEARESFA--IVRKVA-PTIPIIA 124 (368)
T ss_dssp CCEEETTEEESSSEEECCCCCSSHHHHHHHHHHHHHHHHHT-CCEECCCCHHHHHCGGGSHHHH--HHHHHC-SSSCEEE
T ss_pred ceeEECCEeccCCeEEecCCCCCchhhHHHHHHHHHHHHhC-CCeeeecchhccCCHHHHhhHH--HHHHhC-cCcceec
Confidence 34678899999999999999999866 577788877 88888888543 222221111 111223 3457776
Q ss_pred EecC------CCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHH-HHHHHHHHHHhcCCCcEEEEec
Q 020423 130 QIGG------SNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPK-FVGEAMSVIAANTNVPVSVKCR 202 (326)
Q Consensus 130 QL~g------~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~-~l~eiv~avr~~~~~pv~vK~r 202 (326)
++.. .+++...++++.+ +.|+++||+. |........ |- .+.+ -..+.++++++.+++||.+|.
T Consensus 125 nlg~~ql~~~~~~~~~~~av~~~---~a~al~Ihln-~~~~~~~p~--g~---~~~~~~~~~~i~~i~~~~~vPVivK~- 194 (368)
T 3vkj_A 125 NLGMPQLVKGYGLKEFQDAIQMI---EADAIAVHLN-PAQEVFQPE--GE---PEYQIYALEKLRDISKELSVPIIVKE- 194 (368)
T ss_dssp EEEGGGGGTTCCHHHHHHHHHHT---TCSEEEEECC-HHHHHHSSS--CC---CBCBTHHHHHHHHHHTTCSSCEEEEC-
T ss_pred CcCeeecCCCCCHHHHHHHHHHh---cCCCeEEEec-chhhhhCCC--CC---chhhHHHHHHHHHHHHHcCCCEEEEe-
Confidence 6654 5667666666655 4566666643 110000000 10 1111 367889999999999999996
Q ss_pred cCCCCCccHHHHHHHHHHHhhhCCccEEEEecC--Cccc-----CC-----------CCcCCcCCCCCccHHHHHHHHhc
Q 020423 203 IGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSR--KALL-----NG-----------ISPAENRTIPPLKYEYYYALLRD 264 (326)
Q Consensus 203 ~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~--~~~~-----~g-----------~~~~~~~~~~~~~~~~i~~i~~~ 264 (326)
.|+.. +.+ .++.++++|+|+|+|+++ +.+. .. ....+| .++ ....+.++.+.
T Consensus 195 vG~g~--s~~-----~A~~l~~aGad~I~V~g~GGt~~~~iE~~R~~~~~~~~~~~~~~~~~~-g~p--t~~~l~~v~~~ 264 (368)
T 3vkj_A 195 SGNGI--SME-----TAKLLYSYGIKNFDTSGQGGTNWIAIEMIRDIRRGNWKAESAKNFLDW-GVP--TAASIMEVRYS 264 (368)
T ss_dssp SSSCC--CHH-----HHHHHHHTTCCEEECCCBTSBCHHHHHHHHHHHTTCTHHHHHHHTTTC-SCB--HHHHHHHHHHH
T ss_pred CCCCC--CHH-----HHHHHHhCCCCEEEEeCCCCCcccchhhhhcccccccchhhccccccc-ccc--HHHHHHHHHHH
Confidence 43322 222 244567899999999653 2110 00 000011 111 23556666666
Q ss_pred CCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHh
Q 020423 265 FPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 301 (326)
Q Consensus 265 ~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~ 301 (326)
..++|||++|||.++.|+.+++..|||+|++||+++.
T Consensus 265 ~~~ipvia~GGI~~~~d~~kal~lGA~~v~ig~~~l~ 301 (368)
T 3vkj_A 265 VPDSFLVGSGGIRSGLDAAKAIALGADIAGMALPVLK 301 (368)
T ss_dssp STTCEEEEESSCCSHHHHHHHHHHTCSEEEECHHHHH
T ss_pred cCCCcEEEECCCCCHHHHHHHHHcCCCEEEEcHHHHH
Confidence 5569999999999999999999999999999999984
|
| >3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=99.73 E-value=4e-17 Score=154.92 Aligned_cols=201 Identities=14% Similarity=0.077 Sum_probs=136.2
Q ss_pred cCeecCCcEEEccCCCCChHHHHHHHHHcCCCcEEEecceeeccccccccchhhhhhcC-CCCCcEEEEecCCCHHHHHH
Q 020423 63 ARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFS-PEQHPIVLQIGGSNLDNLAK 141 (326)
Q Consensus 63 g~~~l~nrivlAPM~~~s~~~~r~~~~~~Gg~gli~te~~~~~~~~~~~~~~~~~~~~~-~~~~piivQL~g~~~~~f~~ 141 (326)
.++.++.|+++|||.++++..++....+.||.|++... ..++... +...++. ....|+.+++.... .+
T Consensus 40 ~~~~l~~Pii~apM~~vt~~~lA~avA~~GGlgii~~~-~s~e~~~------~~I~~vk~~~~~pvga~ig~~~----~e 108 (361)
T 3khj_A 40 KNVSLKIPLISSAMDTVTEHLMAVGMARLGGIGIIHKN-MDMESQV------NEVLKVKNSGGLRVGAAIGVNE----IE 108 (361)
T ss_dssp SSCEESSSEEECSSTTTCSHHHHHHHHHTTCEEEECSS-SCHHHHH------HHHHHHHHTTCCCCEEEECTTC----HH
T ss_pred cccccCCCEEeecCCCCCcHHHHHHHHHcCCCeEEecC-CCHHHHH------HHHHHHHhccCceEEEEeCCCH----HH
Confidence 46778999999999999999999877778988877431 1111111 1111121 23568999997655 56
Q ss_pred HHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHHHH
Q 020423 142 ATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKV 221 (326)
Q Consensus 142 aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia~~ 221 (326)
.++.+.++|+|.|+||.+. | +++.+.+.++.+++..+.|+.++.- .+.++ ++.
T Consensus 109 ~a~~l~eaGad~I~ld~a~-----------G-----~~~~~~~~i~~i~~~~~~~Vivg~v------~t~e~-----A~~ 161 (361)
T 3khj_A 109 RAKLLVEAGVDVIVLDSAH-----------G-----HSLNIIRTLKEIKSKMNIDVIVGNV------VTEEA-----TKE 161 (361)
T ss_dssp HHHHHHHTTCSEEEECCSC-----------C-----SBHHHHHHHHHHHHHCCCEEEEEEE------CSHHH-----HHH
T ss_pred HHHHHHHcCcCeEEEeCCC-----------C-----CcHHHHHHHHHHHHhcCCcEEEccC------CCHHH-----HHH
Confidence 6777888999999998532 1 3567788899998888899988522 22332 334
Q ss_pred hhhCCccEEEEecCCcccCCCCcCC-cCCCCCccHHHHHHH---HhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhH
Q 020423 222 SSLSPTRHFIIHSRKALLNGISPAE-NRTIPPLKYEYYYAL---LRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGR 297 (326)
Q Consensus 222 le~~Gvd~I~v~~~~~~~~g~~~~~-~~~~~~~~~~~i~~i---~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGR 297 (326)
+.++|+|+|.+..... +..... ........+..+.++ .+. .++|||+.|||.+++++.++++.|||+|++||
T Consensus 162 l~~aGaD~I~VG~~~G---s~~~tr~~~g~g~p~~~~i~~v~~~~~~-~~iPVIA~GGI~~~~di~kala~GAd~V~vGs 237 (361)
T 3khj_A 162 LIENGADGIKVGIGPG---SICTTRIVAGVGVPQITAIEKCSSVASK-FGIPIIADGGIRYSGDIGKALAVGASSVMIGS 237 (361)
T ss_dssp HHHTTCSEEEECSSCC---TTCCHHHHTCBCCCHHHHHHHHHHHHHH-HTCCEEEESCCCSHHHHHHHHHHTCSEEEEST
T ss_pred HHHcCcCEEEEecCCC---cCCCcccccCCCCCcHHHHHHHHHHHhh-cCCeEEEECCCCCHHHHHHHHHcCCCEEEECh
Confidence 5679999999942211 000000 000111234545444 333 38999999999999999999999999999999
Q ss_pred HHHhCCch
Q 020423 298 AAYQNPWY 305 (326)
Q Consensus 298 all~dP~l 305 (326)
+++..++-
T Consensus 238 ~~~~t~Es 245 (361)
T 3khj_A 238 ILAGTEES 245 (361)
T ss_dssp TTTTBTTS
T ss_pred hhhcCCcC
Confidence 99998763
|
| >1p4c_A L(+)-mandelate dehydrogenase; TIM barrel, hydroxy acid oxidizing enzyme, oxidoreductase; HET: FMN MES; 1.35A {Pseudomonas putida} SCOP: c.1.4.1 PDB: 1huv_A* 1p5b_A* 3giy_A* 2a7p_A* 2a85_A* 2a7n_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=8.6e-17 Score=153.83 Aligned_cols=213 Identities=16% Similarity=0.062 Sum_probs=147.4
Q ss_pred ccccccCeecCCcEEEccCCC--C----ChHHHHHHHHHcCCCcEEEecceeeccccccccchhhhhhcCCCCCcEEEEe
Q 020423 58 KAEMVARQYLPPWFSVAPMMD--W----TDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQI 131 (326)
Q Consensus 58 ~p~~ig~~~l~nrivlAPM~~--~----s~~~~r~~~~~~Gg~gli~te~~~~~~~~~~~~~~~~~~~~~~~~~piivQL 131 (326)
...++.|.++++|+++|||.+ . ++..++..+++.| +++++++.. ..++. .... . .+.+...||
T Consensus 62 ~st~i~G~~l~~Pv~iap~~~~~~~~~~~~~~~a~aa~~~G-~~~~vss~s-~~~le----~i~~---~--~~~~~~fQl 130 (380)
T 1p4c_A 62 LQAEVLGKRQSMPLLIGPTGLNGALWPKGDLALARAATKAG-IPFVLSTAS-NMSIE----DLAR---Q--CDGDLWFQL 130 (380)
T ss_dssp CCEEETTEEESSSEEECCCSCGGGTSTTHHHHHHHHHHHHT-CCEEECTTC-SSCHH----HHHH---H--CCSCEEEEE
T ss_pred ceeEECCeecCCceEecCccccccCCCcHHHHHHHHHHHcC-CCeecCccc-cCCHH----HHHh---c--cCCCeEEEE
Confidence 347888999999999999965 4 6778888888887 678777632 11111 1111 0 257899999
Q ss_pred cCCCHHHHHHHHHHHHHCCCCEEEecC--------------CCCCCcc--c--------CC-CCcccc-c---cC---CH
Q 020423 132 GGSNLDNLAKATELANAYNYDEINLNC--------------GCPSPKV--A--------GH-GCFGVS-L---ML---DP 179 (326)
Q Consensus 132 ~g~~~~~f~~aA~~a~~aG~d~Iein~--------------g~P~~~~--~--------r~-d~yGgs-l---~~---r~ 179 (326)
+....+...+..++++++|++.++|.. +|+.+.. . +. +.-|++ + .. ++
T Consensus 131 y~~~~~~~~~~i~~a~~aG~~al~vTvd~p~~g~r~~d~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~ala~~~~~~~~p 210 (380)
T 1p4c_A 131 YVIHREIAQGMVLKALHTGYTTLVLTTDVAVNGYRERDLHNRFKIPPFLTLKNFEGIDLGKMDKANLEMQAALMSRQMDA 210 (380)
T ss_dssp CCSSHHHHHHHHHHHHHTTCCEEEEECSCSSCCCCHHHHHHTCCCCTTCCCGGGTTCCCSCCSSTTTTTHHHHTSSCCCT
T ss_pred EechHHHHHHHHHHHHHcCCCEEEEeecCccccchhHHHhcCCCCccccCHHHhhhhhhhccCcccchHHHHHHHhhcCc
Confidence 865566677788899999999998743 4432100 0 00 000211 1 11 56
Q ss_pred HHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEE--ecCCcccCCCCcCCcCCCCCccHHH
Q 020423 180 KFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFII--HSRKALLNGISPAENRTIPPLKYEY 257 (326)
Q Consensus 180 ~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v--~~~~~~~~g~~~~~~~~~~~~~~~~ 257 (326)
++..++++++++.++.|+.+|.- .+.++ ++.+.++|+|.|.| |++..... .+..++.
T Consensus 211 ~~~~~~i~~i~~~~~~Pv~vkgv------~t~e~-----a~~a~~aGad~I~vs~~gg~~~d~----------~~~~~~~ 269 (380)
T 1p4c_A 211 SFNWEALRWLRDLWPHKLLVKGL------LSAED-----ADRCIAEGADGVILSNHGGRQLDC----------AISPMEV 269 (380)
T ss_dssp TCCHHHHHHHHHHCCSEEEEEEE------CCHHH-----HHHHHHTTCSEEEECCGGGTSCTT----------CCCGGGT
T ss_pred cccHHHHHHHHHhcCCCEEEEec------CcHHH-----HHHHHHcCCCEEEEcCCCCCcCCC----------CcCHHHH
Confidence 77789999999999999999942 12322 33456799999999 44432111 1234677
Q ss_pred HHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhCC
Q 020423 258 YYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNP 303 (326)
Q Consensus 258 i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~dP 303 (326)
+.++++.. ++|||++|||++++|+.+++..|||+|++||+++...
T Consensus 270 l~~v~~~~-~~pVia~GGI~~~~dv~kal~~GAdaV~iGr~~l~~~ 314 (380)
T 1p4c_A 270 LAQSVAKT-GKPVLIDSGFRRGSDIVKALALGAEAVLLGRATLYGL 314 (380)
T ss_dssp HHHHHHHH-CSCEEECSSCCSHHHHHHHHHTTCSCEEESHHHHHHH
T ss_pred HHHHHHHc-CCeEEEECCCCCHHHHHHHHHhCCcHhhehHHHHHHH
Confidence 77777654 6799999999999999999999999999999998654
|
| >1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1 | Back alignment and structure |
|---|
Probab=99.72 E-value=3.5e-17 Score=157.87 Aligned_cols=214 Identities=10% Similarity=0.026 Sum_probs=138.6
Q ss_pred cccc-CeecCCcEEEccCCCCChHHHHHHHHHcCCCcEEEecceeeccccccccchhhh-------------------h-
Q 020423 60 EMVA-RQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRF-------------------L- 118 (326)
Q Consensus 60 ~~ig-~~~l~nrivlAPM~~~s~~~~r~~~~~~Gg~gli~te~~~~~~~~~~~~~~~~~-------------------~- 118 (326)
.++. ++.+++||++|||++.++.+++..+.+.||.|++. ..++.+.+.......+++ .
T Consensus 33 t~l~~g~~l~~Pii~Apm~~~~~~ela~a~a~aGglg~i~-~~~s~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~ 111 (404)
T 1eep_A 33 TQLTKNISLNIPFLSSAMDTVTESQMAIAIAKEGGIGIIH-KNMSIEAQRKEIEKVKTYKFQKTINTNGDTNEQKPEIFT 111 (404)
T ss_dssp EESSSSCEESSSEEECCCTTTCSHHHHHHHHHHTSEEEEC-SSSCHHHHHHHHHHHHTCC--------------------
T ss_pred eeccCCcccCCCEEeCCCCCCCCHHHHHHHHHCCCEEEEC-CCCCHHHHHHHHHHHHhhccCCCceeccccccccccccc
Confidence 3444 78999999999999999999998888889988876 334433322111100000 0
Q ss_pred ------------h----------cCC--CCCcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCcccc
Q 020423 119 ------------A----------FSP--EQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVS 174 (326)
Q Consensus 119 ------------~----------~~~--~~~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgs 174 (326)
+ +.+ ...++++++... +++.+.++.+.++|+|.|+||.++ |
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~i~~~--~~~~~~a~~~~~~G~d~i~i~~~~-----------g-- 176 (404)
T 1eep_A 112 AKQHLEKSDAYKNAEHKEDFPNACKDLNNKLRVGAAVSID--IDTIERVEELVKAHVDILVIDSAH-----------G-- 176 (404)
T ss_dssp ------------------CCTTCCBCTTSCBCCEEEECSC--TTHHHHHHHHHHTTCSEEEECCSC-----------C--
T ss_pred cCCCCCHHHHHHHHHHhhhcchhhhhcccCceEEEEeCCC--hhHHHHHHHHHHCCCCEEEEeCCC-----------C--
Confidence 0 000 122467777542 235666777889999999998532 1
Q ss_pred ccCCHHHHHHHHHHHHhcC-CCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCc
Q 020423 175 LMLDPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPL 253 (326)
Q Consensus 175 l~~r~~~l~eiv~avr~~~-~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~ 253 (326)
+++++.++++++|+.+ +.|+.++-- .+.++ ++.++++|+|+|.+..+........... .....
T Consensus 177 ---~~~~~~e~i~~ir~~~~~~pviv~~v------~~~~~-----a~~a~~~Gad~I~vg~~~G~~~~~~~~~--~~g~p 240 (404)
T 1eep_A 177 ---HSTRIIELIKKIKTKYPNLDLIAGNI------VTKEA-----ALDLISVGADCLKVGIGPGSICTTRIVA--GVGVP 240 (404)
T ss_dssp ---SSHHHHHHHHHHHHHCTTCEEEEEEE------CSHHH-----HHHHHTTTCSEEEECSSCSTTSHHHHHH--CCCCC
T ss_pred ---ChHHHHHHHHHHHHHCCCCeEEEcCC------CcHHH-----HHHHHhcCCCEEEECCCCCcCcCccccC--CCCcc
Confidence 2578889999999988 789987411 12222 3445679999999932111000000000 00111
Q ss_pred cHHHHHHHHh--cCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhCCch
Q 020423 254 KYEYYYALLR--DFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 305 (326)
Q Consensus 254 ~~~~i~~i~~--~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~dP~l 305 (326)
.+..+..+.+ ...++|||++|||.+++|+.++++.|||+|++||+++.+|+.
T Consensus 241 ~~~~l~~v~~~~~~~~ipVia~GGI~~~~d~~~ala~GAd~V~iG~~~l~~~e~ 294 (404)
T 1eep_A 241 QITAICDVYEACNNTNICIIADGGIRFSGDVVKAIAAGADSVMIGNLFAGTKES 294 (404)
T ss_dssp HHHHHHHHHHHHTTSSCEEEEESCCCSHHHHHHHHHHTCSEEEECHHHHTBTTS
T ss_pred hHHHHHHHHHHHhhcCceEEEECCCCCHHHHHHHHHcCCCHHhhCHHHhcCCCC
Confidence 2444444443 224899999999999999999999999999999999998874
|
| >4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A | Back alignment and structure |
|---|
Probab=99.66 E-value=3e-16 Score=148.82 Aligned_cols=204 Identities=10% Similarity=0.002 Sum_probs=130.4
Q ss_pred cCeecCCcEEEccCCCCChHHHHHHHHHcCCCcEEEecceeeccccccccchhhhhhcCCCCCcEEEEecCCCHHHHHHH
Q 020423 63 ARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSNLDNLAKA 142 (326)
Q Consensus 63 g~~~l~nrivlAPM~~~s~~~~r~~~~~~Gg~gli~te~~~~~~~~~~~~~~~~~~~~~~~~~piivQL~g~~~~~f~~a 142 (326)
..+.++.||++|||.++++..+...+.+.||.|++-.. .+++.. .+.+.++.+. .++.+++......++.+.
T Consensus 41 ~~~~l~~Pii~apM~~vs~~~lA~avA~aGGlg~i~~~-~s~e~~------~~~i~~vk~~-~~l~vga~vg~~~~~~~~ 112 (366)
T 4fo4_A 41 KNIALNIPMVSASMDTVTEARLAIALAQEGGIGFIHKN-MSIEQQ------AAQVHQVKIS-GGLRVGAAVGAAPGNEER 112 (366)
T ss_dssp TTEEESSSEEECCCTTTCSHHHHHHHHHTTCEEEECSS-SCHHHH------HHHHHHHHTT-TSCCCEEECCSCTTCHHH
T ss_pred cccccCCCEEeCCCCCCChHHHHHHHHHcCCceEeecC-CCHHHH------HHHHHHHHhc-CceeEEEEeccChhHHHH
Confidence 46778999999999999999999888888988876432 111111 1111112221 233333321112346677
Q ss_pred HHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC-CCcEEEEeccCCCCCccHHHHHHHHHHH
Q 020423 143 TELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFIYKV 221 (326)
Q Consensus 143 A~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~-~~pv~vK~r~g~~~~~~~~e~~~~ia~~ 221 (326)
++.+.++|+|.|+|+... | +++.+.+.++.+++.. +.|+.++.- .+.++ ++.
T Consensus 113 ~~~lieaGvd~I~idta~-----------G-----~~~~~~~~I~~ik~~~p~v~Vi~G~v------~t~e~-----A~~ 165 (366)
T 4fo4_A 113 VKALVEAGVDVLLIDSSH-----------G-----HSEGVLQRIRETRAAYPHLEIIGGNV------ATAEG-----ARA 165 (366)
T ss_dssp HHHHHHTTCSEEEEECSC-----------T-----TSHHHHHHHHHHHHHCTTCEEEEEEE------CSHHH-----HHH
T ss_pred HHHHHhCCCCEEEEeCCC-----------C-----CCHHHHHHHHHHHHhcCCCceEeeee------CCHHH-----HHH
Confidence 888899999999997421 1 2456778888998887 778776421 23332 233
Q ss_pred hhhCCccEEEEecCCcccCCCCcC-CcCCCCCccHHHHHHHHh--cCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHH
Q 020423 222 SSLSPTRHFIIHSRKALLNGISPA-ENRTIPPLKYEYYYALLR--DFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRA 298 (326)
Q Consensus 222 le~~Gvd~I~v~~~~~~~~g~~~~-~~~~~~~~~~~~i~~i~~--~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRa 298 (326)
++++|+|+|.+ |... ++.... .........+..+.++.+ +..++|||+.|||.+++++.+++..|||+|++|++
T Consensus 166 a~~aGAD~I~v-G~gp--Gs~~~tr~~~g~g~p~~~~l~~v~~~~~~~~iPVIA~GGI~~~~di~kala~GAd~V~vGs~ 242 (366)
T 4fo4_A 166 LIEAGVSAVKV-GIGP--GSICTTRIVTGVGVPQITAIADAAGVANEYGIPVIADGGIRFSGDISKAIAAGASCVMVGSM 242 (366)
T ss_dssp HHHHTCSEEEE-CSSC--STTBCHHHHHCCCCCHHHHHHHHHHHHGGGTCCEEEESCCCSHHHHHHHHHTTCSEEEESTT
T ss_pred HHHcCCCEEEE-ecCC--CCCCCcccccCcccchHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEEChH
Confidence 45789999999 3211 111000 000011123555555543 12489999999999999999999999999999999
Q ss_pred HHhCCc
Q 020423 299 AYQNPW 304 (326)
Q Consensus 299 ll~dP~ 304 (326)
++..++
T Consensus 243 f~~t~E 248 (366)
T 4fo4_A 243 FAGTEE 248 (366)
T ss_dssp TTTBTT
T ss_pred hhcCCC
Confidence 998766
|
| >3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.1e-15 Score=144.27 Aligned_cols=199 Identities=15% Similarity=0.117 Sum_probs=134.1
Q ss_pred cccCeecCCcEEEccCCCCChHHHHHHHHHcCCCcEEEecceeeccccccccchhhhhhcCCCCCcEEEEecCCCHHHHH
Q 020423 61 MVARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSNLDNLA 140 (326)
Q Consensus 61 ~ig~~~l~nrivlAPM~~~s~~~~r~~~~~~Gg~gli~te~~~~~~~~~~~~~~~~~~~~~~~~~piivQL~g~~~~~f~ 140 (326)
++++++++.||++|||.++++..++..+.+.||.|.+-+ ..+.+.+.. .. .+....+...+ + ..+...
T Consensus 35 ~l~g~~l~~Pii~ApM~~vte~~lA~A~a~~Gg~gvi~~-~~s~ee~~~------~i---~~~~~~~~~~~-g-~~~~~~ 102 (361)
T 3r2g_A 35 RLGKLTLNLPVISANMDTITESNMANFMHSKGAMGALHR-FMTIEENIQ------EF---KKCKGPVFVSV-G-CTENEL 102 (361)
T ss_dssp TTSSCEESSCEEECCSTTTCSHHHHHHHHHTTCEEBCCS-CSCHHHHHH------HH---HTCCSCCBEEE-C-SSHHHH
T ss_pred EECCEEcCCCEEECCCCCchHHHHHHHHHHcCCCEEEeC-CCCHHHHHH------HH---hhcceEEEEEc-C-CCHHHH
Confidence 458889999999999999999999999898998776543 222222211 11 11112233333 2 345677
Q ss_pred HHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC-CCcEEEEeccCCCCCccHHHHHHHHH
Q 020423 141 KATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFIY 219 (326)
Q Consensus 141 ~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~-~~pv~vK~r~g~~~~~~~~e~~~~ia 219 (326)
+.++++.++|+|.|+++..+.. ++.+.++++.+|+.. +.||.+|-- .+.++ +
T Consensus 103 e~~~~a~~aGvdvI~id~a~G~----------------~~~~~e~I~~ir~~~~~~~Vi~G~V------~T~e~-----A 155 (361)
T 3r2g_A 103 QRAEALRDAGADFFCVDVAHAH----------------AKYVGKTLKSLRQLLGSRCIMAGNV------ATYAG-----A 155 (361)
T ss_dssp HHHHHHHHTTCCEEEEECSCCS----------------SHHHHHHHHHHHHHHTTCEEEEEEE------CSHHH-----H
T ss_pred HHHHHHHHcCCCEEEEeCCCCC----------------cHhHHHHHHHHHHhcCCCeEEEcCc------CCHHH-----H
Confidence 7899999999999999864321 245678899999876 789988621 23332 3
Q ss_pred HHhhhCCccEEEEecCCcccCCCCcC-C-cCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhH
Q 020423 220 KVSSLSPTRHFIIHSRKALLNGISPA-E-NRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGR 297 (326)
Q Consensus 220 ~~le~~Gvd~I~v~~~~~~~~g~~~~-~-~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGR 297 (326)
+.+.++|+|+|.|.... |.... . ........+..+.++.+.. + |||+.|||.+++|+.++++.|||+||+||
T Consensus 156 ~~a~~aGaD~I~Vg~g~----G~~~~tr~~~g~g~p~l~aI~~~~~~~-~-PVIAdGGI~~~~di~kALa~GAd~V~iGr 229 (361)
T 3r2g_A 156 DYLASCGADIIKAGIGG----GSVCSTRIKTGFGVPMLTCIQDCSRAD-R-SIVADGGIKTSGDIVKALAFGADFVMIGG 229 (361)
T ss_dssp HHHHHTTCSEEEECCSS----SSCHHHHHHHCCCCCHHHHHHHHTTSS-S-EEEEESCCCSHHHHHHHHHTTCSEEEESG
T ss_pred HHHHHcCCCEEEEcCCC----CcCccccccCCccHHHHHHHHHHHHhC-C-CEEEECCCCCHHHHHHHHHcCCCEEEECh
Confidence 44567999999994221 11000 0 0000111366666665443 3 99999999999999999999999999999
Q ss_pred HHHhCCc
Q 020423 298 AAYQNPW 304 (326)
Q Consensus 298 all~dP~ 304 (326)
+++...+
T Consensus 230 ~f~~t~E 236 (361)
T 3r2g_A 230 MLAGSAP 236 (361)
T ss_dssp GGTTBTT
T ss_pred HHhCCcc
Confidence 9998754
|
| >3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=99.65 E-value=9.4e-16 Score=146.74 Aligned_cols=208 Identities=13% Similarity=0.013 Sum_probs=129.7
Q ss_pred cCeecCCcEEEccCCCCChHHHHHHHHHcCCCcEEEecceeeccccccccchhhh-------------------------
Q 020423 63 ARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRF------------------------- 117 (326)
Q Consensus 63 g~~~l~nrivlAPM~~~s~~~~r~~~~~~Gg~gli~te~~~~~~~~~~~~~~~~~------------------------- 117 (326)
+.+.++.||++|||.++|+..+...+.+.||.|.|-. ..+++.+.......+++
T Consensus 37 ~~l~l~~PIi~a~M~~Vs~~~lA~Ava~aGGlGvi~~-~~~~e~~~~~i~~vk~~~~g~~~~P~~~~~nL~~~~~~~~~~ 115 (400)
T 3ffs_A 37 KNVSLKIPLISSAMDTVTEHLMAVGMARLGGIGIIHK-NMDMESQVNEVLKVKNWISNLEKNESTPDQNLDKESTDGKDT 115 (400)
T ss_dssp SSCEESSSEEECSCTTTCSSHHHHHHHTTTCEEEECS-SSCHHHHHHHHHHHHCCC------------------------
T ss_pred cccCCCCCEEeCCCCCcCcHHHHHHHHHCCCEEEeCC-CCCHHHHHHHHHHHHhhccCcccCCCCccccccCCCCCHHHH
Confidence 5677899999999999999999999888999998754 44433221111000000
Q ss_pred ---hh--cC-----CCCCcE--EEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHH
Q 020423 118 ---LA--FS-----PEQHPI--VLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEA 185 (326)
Q Consensus 118 ---~~--~~-----~~~~pi--ivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~ei 185 (326)
.+ .. ++...+ .+-+...+ .+.++.+.++|+|.|.++.+. | .++.+.++
T Consensus 116 ~~~~~~~~~p~~~~d~~g~l~v~~~v~~~~----~e~~~~lveaGvdvIvldta~-----------G-----~~~~~~e~ 175 (400)
T 3ffs_A 116 KSNNNIDAYSNENLDNKGRLRVGAAIGVNE----IERAKLLVEAGVDVIVLDSAH-----------G-----HSLNIIRT 175 (400)
T ss_dssp -------CCTTCCBCTTSSBCCEEEECCC-----CHHHHHHHHHTCSEEEECCSC-----------C-----SBHHHHHH
T ss_pred HHHHHhhhCcchhhccccceeEEeecCCCH----HHHHHHHHHcCCCEEEEeCCC-----------C-----CcccHHHH
Confidence 00 00 011111 11111111 466777888899999986421 2 24567788
Q ss_pred HHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhc-
Q 020423 186 MSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRD- 264 (326)
Q Consensus 186 v~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~- 264 (326)
++.+++..+.|+.++.- .+.++ ++.++++|+|+|.+.. .....+. ...........+..+.++.+.
T Consensus 176 I~~ik~~~~i~Vi~g~V------~t~e~-----A~~a~~aGAD~I~vG~-g~Gs~~~-tr~~~g~g~p~~~al~~v~~~~ 242 (400)
T 3ffs_A 176 LKEIKSKMNIDVIVGNV------VTEEA-----TKELIENGADGIKVGI-GPGSICT-TRIVAGVGVPQITAIEKCSSVA 242 (400)
T ss_dssp HHHHHTTCCCEEEEEEE------CSHHH-----HHHHHHTTCSEEEECC-----------CCSCBCCCHHHHHHHHHHHH
T ss_pred HHHHHhcCCCeEEEeec------CCHHH-----HHHHHHcCCCEEEEeC-CCCcCcc-cccccccchhHHHHHHHHHHHH
Confidence 89998888889887521 22332 3345679999999932 2100000 000001112235666665542
Q ss_pred -CCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhCCc
Q 020423 265 -FPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW 304 (326)
Q Consensus 265 -~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~dP~ 304 (326)
..++|||+.|||.+++|+.++++.|||+||+||+|+..++
T Consensus 243 ~~~~IPVIA~GGI~~~~di~kalalGAd~V~vGt~f~~t~E 283 (400)
T 3ffs_A 243 SKFGIPIIADGGIRYSGDIGKALAVGASSVMIGSILAGTEE 283 (400)
T ss_dssp TTTTCCEEEESCCCSHHHHHHHHTTTCSEEEECGGGTTBTT
T ss_pred HhcCCCEEecCCCCCHHHHHHHHHcCCCEEEEChHHhcCCC
Confidence 2489999999999999999999999999999999998765
|
| >2qr6_A IMP dehydrogenase/GMP reductase; NP_599840.1, G reductase domain, structural genomics, joint center for STR genomics, JCSG; HET: MSE; 1.50A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.61 E-value=4.3e-15 Score=142.72 Aligned_cols=215 Identities=10% Similarity=0.006 Sum_probs=135.8
Q ss_pred ccccCeecCCcEEEccCCCCChHHHHHHHHHcCCCcEEEecceeec---------ccc---c------------------
Q 020423 60 EMVARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAE---------TII---Y------------------ 109 (326)
Q Consensus 60 ~~ig~~~l~nrivlAPM~~~s~~~~r~~~~~~Gg~gli~te~~~~~---------~~~---~------------------ 109 (326)
.++.++++++|+++|||++++++.++..+.+.|+.|++.+|+.... .+. .
T Consensus 59 t~l~g~~l~~Pii~Apm~g~~~~~~a~a~a~~G~~gvl~~~~~~~~~~~~~~~~eeia~~~~~~d~~~g~~~~~q~~~~~ 138 (393)
T 2qr6_A 59 WHIDAYKFDLPFMNHPSDALASPEFVIEMGKQGGLGVINAEGLWGRHADLDEAIAKVIAAYEEGDQAAATRTLQELHAAP 138 (393)
T ss_dssp EEETTEEESSSEEECCCTTTCCHHHHHHHHHTTSBCEEETTSSTTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred eEEcccccCCCeEeCCCCCcccHHHHHHHHHcCCcEEEEecceecccCCchhHHHHHHHHHHhcCCCccchhhhhccccc
Confidence 4567899999999999999999999988889999999998762211 000 0
Q ss_pred -cccchhhhh-hcCCCCCcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHH
Q 020423 110 -QQGNLDRFL-AFSPEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMS 187 (326)
Q Consensus 110 -~~~~~~~~~-~~~~~~~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~ 187 (326)
+.+....++ +..+.+.++++.+.+... .+.++.+.++|+|.+.+|. .+.. .+|++ ++...+-+.
T Consensus 139 ~d~~~~~~~i~~~~~~g~~v~~~v~~~~~---~e~a~~~~~agad~i~i~~-~~~~-----~~~~~-----~~~~~~~i~ 204 (393)
T 2qr6_A 139 LDTELLSERIAQVRDSGEIVAVRVSPQNV---REIAPIVIKAGADLLVIQG-TLIS-----AEHVN-----TGGEALNLK 204 (393)
T ss_dssp CCHHHHHHHHHHHHHTTSCCEEEECTTTH---HHHHHHHHHTTCSEEEEEC-SSCC-----SSCCC-----C-----CHH
T ss_pred CCHHHHHHHHHHHhhcCCeEEEEeCCccH---HHHHHHHHHCCCCEEEEeC-Cccc-----cccCC-----CcccHHHHH
Confidence 000001111 122346788888866544 3445566678999999984 2211 11332 111112256
Q ss_pred HHHhcCCCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhc---
Q 020423 188 VIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRD--- 264 (326)
Q Consensus 188 avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~--- 264 (326)
++++.++.|+.+|- . .+.++ ++.+.++|+|.|.|. ... +.+. ......+..++.+.++.+.
T Consensus 205 ~l~~~~~~pvi~gg---i---~t~e~-----a~~~~~~Gad~i~vg-~Gg-~~~~---~~~~~g~~~~~~l~~v~~~~~~ 268 (393)
T 2qr6_A 205 EFIGSLDVPVIAGG---V---NDYTT-----ALHMMRTGAVGIIVG-GGE-NTNS---LALGMEVSMATAIADVAAARRD 268 (393)
T ss_dssp HHHHHCSSCEEEEC---C---CSHHH-----HHHHHTTTCSEEEES-CCS-CCHH---HHTSCCCCHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCEEECC---c---CCHHH-----HHHHHHcCCCEEEEC-CCc-cccc---ccCCCCCChHHHHHHHHHHHHH
Confidence 67777899999962 2 22333 233456999999993 211 1110 0001112235666555443
Q ss_pred ----CC--CceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhCCc
Q 020423 265 ----FP--DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW 304 (326)
Q Consensus 265 ----~~--~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~dP~ 304 (326)
.. ++|||++|||.+++|+.+++..|||+|++||+++..+.
T Consensus 269 ~~~~~~~~~ipvia~GGI~~~~dv~kalalGA~~V~iG~~~l~~~e 314 (393)
T 2qr6_A 269 YLDETGGRYVHIIADGSIENSGDVVKAIACGADAVVLGSPLARAEE 314 (393)
T ss_dssp HHHHHTSCCCEEEECSSCCSHHHHHHHHHHTCSEEEECGGGGGSTT
T ss_pred hHhhcCCcceEEEEECCCCCHHHHHHHHHcCCCEEEECHHHHcCCC
Confidence 22 29999999999999999999999999999999988875
|
| >2c6q_A GMP reductase 2; TIM barrel, metal-binding, NADP, oxidoreductase, potassium; HET: IMP NDP; 1.70A {Homo sapiens} PDB: 2bzn_A* 2a7r_A* 2ble_A* 2bwg_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=4e-14 Score=133.89 Aligned_cols=202 Identities=11% Similarity=0.044 Sum_probs=128.4
Q ss_pred cCeecCCcEEEccCCCCChHHHHHHHHHcCCCcEEEecceeeccccccccchhhhhhcCCC-CCcEEEEecCCCHHHHHH
Q 020423 63 ARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPE-QHPIVLQIGGSNLDNLAK 141 (326)
Q Consensus 63 g~~~l~nrivlAPM~~~s~~~~r~~~~~~Gg~gli~te~~~~~~~~~~~~~~~~~~~~~~~-~~piivQL~g~~~~~f~~ 141 (326)
+++.++.||++|||.+.++..+...+.+.||.|++...+ +.+.... ..+. .+. -.++.+.+ +...+++.+
T Consensus 52 ~~~~l~~PIi~ApM~~~~~~~lA~Ava~~Gglg~i~~~~-s~e~~~~---~i~~----~p~~l~~v~~~~-g~~~~~~~~ 122 (351)
T 2c6q_A 52 KQTYSGVPIIAANMDTVGTFEMAKVLCKFSLFTAVHKHY-SLVQWQE---FAGQ----NPDCLEHLAASS-GTGSSDFEQ 122 (351)
T ss_dssp CCEEEECCEEECSSTTTSCHHHHHHHHHTTCEEECCTTC-CHHHHHH---HHHH----CGGGCTTEEEEE-CSSHHHHHH
T ss_pred cCccccCCEEECCCCCCCcHHHHHHHHHCCCEEEEcCCC-CHHHHHH---HHhh----CchhhheeEeec-CCChHHHHH
Confidence 378899999999999999999998888889877664432 2111111 0100 000 12466665 445666655
Q ss_pred HHHHHHH-CCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC-CCcEEEEeccCCCCCccHHHHHHHHH
Q 020423 142 ATELANA-YNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFIY 219 (326)
Q Consensus 142 aA~~a~~-aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~-~~pv~vK~r~g~~~~~~~~e~~~~ia 219 (326)
+...+.. .|+|.++++... | ++..+.+.++++|+.+ +.|+.+|.-. +.++ +
T Consensus 123 ~~~l~~~~~g~~~i~i~~~~-----------g-----~~~~~~~~i~~lr~~~~~~~vi~g~v~------t~e~-----A 175 (351)
T 2c6q_A 123 LEQILEAIPQVKYICLDVAN-----------G-----YSEHFVEFVKDVRKRFPQHTIMAGNVV------TGEM-----V 175 (351)
T ss_dssp HHHHHHHCTTCCEEEEECSC-----------T-----TBHHHHHHHHHHHHHCTTSEEEEEEEC------SHHH-----H
T ss_pred HHHHHhccCCCCEEEEEecC-----------C-----CcHHHHHHHHHHHHhcCCCeEEEEeCC------CHHH-----H
Confidence 4444332 389999997521 2 2456778899999988 7899887322 2332 3
Q ss_pred HHhhhCCccEEEEecCCc-ccCCCCcCCcCCCCCccHHHHHHH---HhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhh
Q 020423 220 KVSSLSPTRHFIIHSRKA-LLNGISPAENRTIPPLKYEYYYAL---LRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMV 295 (326)
Q Consensus 220 ~~le~~Gvd~I~v~~~~~-~~~g~~~~~~~~~~~~~~~~i~~i---~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~i 295 (326)
+.+.++|+|+|.|+.+.. +..+.. ......+ ....+.++ .+. .++|||+.|||.++.|+.+++..|||+|++
T Consensus 176 ~~a~~aGaD~I~v~~g~G~~~~~r~-~~g~~~p--~~~~l~~v~~~~~~-~~ipvIa~GGI~~g~di~kAlalGA~~V~v 251 (351)
T 2c6q_A 176 EELILSGADIIKVGIGPGSVCTTRK-KTGVGYP--QLSAVMECADAAHG-LKGHIISDGGCSCPGDVAKAFGAGADFVML 251 (351)
T ss_dssp HHHHHTTCSEEEECSSCSTTBCHHH-HHCBCCC--HHHHHHHHHHHHHH-TTCEEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHhCCCEEEECCCCCcCcCccc-cCCCCcc--HHHHHHHHHHHHhh-cCCcEEEeCCCCCHHHHHHHHHcCCCceec
Confidence 345679999999863211 000000 0000111 23333333 333 379999999999999999999999999999
Q ss_pred hHHHHhCCc
Q 020423 296 GRAAYQNPW 304 (326)
Q Consensus 296 GRall~dP~ 304 (326)
||+++..++
T Consensus 252 G~~fl~~~E 260 (351)
T 2c6q_A 252 GGMLAGHSE 260 (351)
T ss_dssp STTTTTBTT
T ss_pred cHHHhcCcc
Confidence 999987544
|
| >3sgz_A Hydroxyacid oxidase 2; flavoprotein, homology, INH oxidoreductase-oxidoreductase inhibitor complex; HET: FMN HO6; 1.35A {Rattus norvegicus} PDB: 1tb3_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=4e-14 Score=133.12 Aligned_cols=214 Identities=14% Similarity=0.195 Sum_probs=139.6
Q ss_pred ccccCeecCCcEEEccCCC----CChHH--HHHHHHHcCCCcEEEecceeeccccccccchhhhhhcCCCCCcEEEEecC
Q 020423 60 EMVARQYLPPWFSVAPMMD----WTDNH--YRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGG 133 (326)
Q Consensus 60 ~~ig~~~l~nrivlAPM~~----~s~~~--~r~~~~~~Gg~gli~te~~~~~~~~~~~~~~~~~~~~~~~~~piivQL~g 133 (326)
.++=|.+++-|+.+||+.. ..+.+ ..+.+.+.| .-.+.+-+.+ ..++..... ..+.+...||+-
T Consensus 61 t~llG~~~~~P~~iaP~g~~~l~~~~ge~~~araa~~~g-i~~~lSt~ss--------~s~e~v~~~-~~~~~~wfQlY~ 130 (352)
T 3sgz_A 61 TTIQGQEISAPICISPTAFHSIAWPDGEKSTARAAQEAN-ICYVISSYAS--------YSLEDIVAA-APEGFRWFQLYM 130 (352)
T ss_dssp EEETTEEESSSEEECCCSCGGGTCTTHHHHHHHHHHHHT-CEEEECTTCS--------SCHHHHHHH-STTCEEEEECCC
T ss_pred eEECCcccCCcceechHHHHHhcCccHHHHHHHHHHHcC-CCeEeCCCCC--------CCHHHHHHh-ccCccceecccc
Confidence 4555678888999999865 23333 334455554 4333322211 112222211 124678999975
Q ss_pred C-CHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCC--------------Cc--------ccc---ccCCHHHHHHHHH
Q 020423 134 S-NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHG--------------CF--------GVS---LMLDPKFVGEAMS 187 (326)
Q Consensus 134 ~-~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d--------------~y--------Ggs---l~~r~~~l~eiv~ 187 (326)
. +.+.-.+..++++++|+..+-+....|..-+...| .+ ++. ..-++.+.-+.++
T Consensus 131 ~~d~~~~~~l~~ra~~aG~~alvlTvD~p~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~w~~i~ 210 (352)
T 3sgz_A 131 KSDWDFNKQMVQRAEALGFKALVITIDTPVLGNRRRDKRNQLNLEANILKAALRALKEEKPTQSVPVLFPKASFCWNDLS 210 (352)
T ss_dssp CSCHHHHHHHHHHHHHTTCCCEEEECSCSSCCCCHHHHHHHHHSCHHHHTTCC---------------CCCTTCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEEeCCCCCCcchhhhhcCCCCCcccchhhhcccccccccchhhhhccCCCCCHHHHH
Confidence 4 56666677899999999999998877753211000 00 000 1124556668899
Q ss_pred HHHhcCCCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCC-
Q 020423 188 VIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFP- 266 (326)
Q Consensus 188 avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~- 266 (326)
++|+.++.|+.+|.... .++ ++.++++|+|.|+|++... ... + ..+..++.+.++.+...
T Consensus 211 ~lr~~~~~PvivK~v~~------~e~-----A~~a~~~GaD~I~vsn~GG----~~~-d---~~~~~~~~L~~i~~av~~ 271 (352)
T 3sgz_A 211 LLQSITRLPIILKGILT------KED-----AELAMKHNVQGIVVSNHGG----RQL-D---EVSASIDALREVVAAVKG 271 (352)
T ss_dssp HHHHHCCSCEEEEEECS------HHH-----HHHHHHTTCSEEEECCGGG----TSS-C---SSCCHHHHHHHHHHHHTT
T ss_pred HHHHhcCCCEEEEecCc------HHH-----HHHHHHcCCCEEEEeCCCC----Ccc-C---CCccHHHHHHHHHHHhCC
Confidence 99999999999997632 222 3455679999999975321 100 0 12345787877766532
Q ss_pred CceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhC
Q 020423 267 DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN 302 (326)
Q Consensus 267 ~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~d 302 (326)
++|||++|||++++|+.+++..|||+|++||++|..
T Consensus 272 ~ipVia~GGI~~g~Dv~kaLalGA~aV~iGr~~l~~ 307 (352)
T 3sgz_A 272 KIEVYMDGGVRTGTDVLKALALGARCIFLGRPILWG 307 (352)
T ss_dssp SSEEEEESSCCSHHHHHHHHHTTCSEEEESHHHHHH
T ss_pred CCeEEEECCCCCHHHHHHHHHcCCCEEEECHHHHHH
Confidence 799999999999999999999999999999999853
|
| >4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.51 E-value=9.7e-14 Score=136.82 Aligned_cols=138 Identities=12% Similarity=0.019 Sum_probs=94.0
Q ss_pred HHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC-CCcEEEEeccCCCCCccHHHHHH
Q 020423 138 NLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCD 216 (326)
Q Consensus 138 ~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~-~~pv~vK~r~g~~~~~~~~e~~~ 216 (326)
++.+.++.+.++|+|.|+|+.+++. .+.+.+.++++++.. +.|+.++-- .+.++
T Consensus 229 ~~~~~a~~l~~aG~d~I~id~a~g~----------------~~~~~~~v~~i~~~~p~~~Vi~g~v------~t~e~--- 283 (490)
T 4avf_A 229 DTGERVAALVAAGVDVVVVDTAHGH----------------SKGVIERVRWVKQTFPDVQVIGGNI------ATAEA--- 283 (490)
T ss_dssp THHHHHHHHHHTTCSEEEEECSCCS----------------BHHHHHHHHHHHHHCTTSEEEEEEE------CSHHH---
T ss_pred chHHHHHHHhhcccceEEecccCCc----------------chhHHHHHHHHHHHCCCceEEEeee------CcHHH---
Confidence 4566677788899999999976542 346678899999887 778888521 22322
Q ss_pred HHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhc--CCCceEEEeCCCCCHHHHHHHHHhCCChhh
Q 020423 217 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRD--FPDLTFTLNGGINTVDEVNAALRKGAHHVM 294 (326)
Q Consensus 217 ~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~--~~~iPVIa~GgI~s~~da~~~l~~GaD~V~ 294 (326)
++.+.++|+|+|.|..+.....+ ...........+..+.++.+. ..++|||+.|||.+++|+.++++.|||+||
T Consensus 284 --a~~l~~aGaD~I~vg~g~Gs~~~--t~~~~g~g~p~~~~l~~v~~~~~~~~iPVIa~GGI~~~~di~kal~~GAd~V~ 359 (490)
T 4avf_A 284 --AKALAEAGADAVKVGIGPGSICT--TRIVAGVGVPQISAIANVAAALEGTGVPLIADGGIRFSGDLAKAMVAGAYCVM 359 (490)
T ss_dssp --HHHHHHTTCSEEEECSSCSTTCH--HHHHTCBCCCHHHHHHHHHHHHTTTTCCEEEESCCCSHHHHHHHHHHTCSEEE
T ss_pred --HHHHHHcCCCEEEECCCCCcCCC--ccccCCCCccHHHHHHHHHHHhccCCCcEEEeCCCCCHHHHHHHHHcCCCeee
Confidence 33456799999998432110000 000001112246666665542 137999999999999999999999999999
Q ss_pred hhHHHHhCCc
Q 020423 295 VGRAAYQNPW 304 (326)
Q Consensus 295 iGRall~dP~ 304 (326)
+|++++...+
T Consensus 360 vGs~~~~~~E 369 (490)
T 4avf_A 360 MGSMFAGTEE 369 (490)
T ss_dssp ECTTTTTBTT
T ss_pred ecHHHhcCCC
Confidence 9999987553
|
| >4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.1e-13 Score=136.58 Aligned_cols=138 Identities=9% Similarity=0.017 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC-CCcEEEEeccCCCCCccHHHHH
Q 020423 137 DNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLC 215 (326)
Q Consensus 137 ~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~-~~pv~vK~r~g~~~~~~~~e~~ 215 (326)
+++.+.++.+.++|+|.|+||.+++. .+.+.++++++++.. +.|+.++-- .+.++
T Consensus 230 ~d~~~~a~~l~~aG~d~I~id~a~g~----------------~~~~~~~i~~ir~~~p~~~Vi~g~v------~t~e~-- 285 (496)
T 4fxs_A 230 PGNEERVKALVEAGVDVLLIDSSHGH----------------SEGVLQRIRETRAAYPHLEIIGGNV------ATAEG-- 285 (496)
T ss_dssp SCCHHHHHHHHHTTCSEEEEECSCTT----------------SHHHHHHHHHHHHHCTTCCEEEEEE------CSHHH--
T ss_pred cchHHHHHHHHhccCceEEecccccc----------------chHHHHHHHHHHHHCCCceEEEccc------CcHHH--
Confidence 34566777788899999999987652 345678899999887 788888421 12222
Q ss_pred HHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHh---cCCCceEEEeCCCCCHHHHHHHHHhCCCh
Q 020423 216 DFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLR---DFPDLTFTLNGGINTVDEVNAALRKGAHH 292 (326)
Q Consensus 216 ~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~---~~~~iPVIa~GgI~s~~da~~~l~~GaD~ 292 (326)
++.+.++|+|+|.|..+....... ..........+..+.++.+ +. ++|||+.|||.+++|+.++++.|||+
T Consensus 286 ---a~~l~~aGaD~I~Vg~g~Gs~~~t--r~~~g~g~p~~~~i~~v~~~~~~~-~iPVIa~GGI~~~~di~kala~GAd~ 359 (496)
T 4fxs_A 286 ---ARALIEAGVSAVKVGIGPGSICTT--RIVTGVGVPQITAIADAAGVANEY-GIPVIADGGIRFSGDISKAIAAGASC 359 (496)
T ss_dssp ---HHHHHHHTCSEEEECSSCCTTBCH--HHHHCCCCCHHHHHHHHHHHHGGG-TCCEEEESCCCSHHHHHHHHHTTCSE
T ss_pred ---HHHHHHhCCCEEEECCCCCcCccc--ccccCCCccHHHHHHHHHHHhccC-CCeEEEeCCCCCHHHHHHHHHcCCCe
Confidence 334557899999987432210000 0000011123555555544 33 79999999999999999999999999
Q ss_pred hhhhHHHHhCCc
Q 020423 293 VMVGRAAYQNPW 304 (326)
Q Consensus 293 V~iGRall~dP~ 304 (326)
||+||+++...+
T Consensus 360 V~iGs~f~~t~E 371 (496)
T 4fxs_A 360 VMVGSMFAGTEE 371 (496)
T ss_dssp EEESTTTTTBTT
T ss_pred EEecHHHhcCCC
Confidence 999999987553
|
| >1mzh_A Deoxyribose-phosphate aldolase; alpha-beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Aquifex aeolicus} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=99.50 E-value=3.9e-14 Score=126.02 Aligned_cols=183 Identities=11% Similarity=0.087 Sum_probs=115.9
Q ss_pred EEccCCCCChHHHHHHHH---HcCCCcEEE--ecceee-ccccccccchhhhhhcCCCCCcEEEEecCCCHHHHHHHHHH
Q 020423 72 SVAPMMDWTDNHYRTLAR---LISKHAWLY--TEMLAA-ETIIYQQGNLDRFLAFSPEQHPIVLQIGGSNLDNLAKATEL 145 (326)
Q Consensus 72 vlAPM~~~s~~~~r~~~~---~~Gg~gli~--te~~~~-~~~~~~~~~~~~~~~~~~~~~piivQL~g~~~~~f~~aA~~ 145 (326)
.+.|+ .|+..++.+++ ++| ++.++ .+++.. ..... . . ..... .+.|+..|+ .+.-...+++
T Consensus 12 ~l~p~--~t~~~i~~l~~~a~~~g-~~~v~v~~~~v~~~~~~l~-~--v-~v~~v--~~~P~g~~~----~~~k~~~~~~ 78 (225)
T 1mzh_A 12 ALKPH--LSEKEIEEFVLKSEELG-IYAVCVNPYHVKLASSIAK-K--V-KVCCV--IGFPLGLNK----TSVKVKEAVE 78 (225)
T ss_dssp ECCTT--CCHHHHHHHHHHHHHTT-CSEEEECGGGHHHHHHHCS-S--S-EEEEE--ESTTTCCSC----HHHHHHHHHH
T ss_pred ccCCC--CCHHHHHHHHHHHHHhC-CeEEEECHHHHHHHHHHhc-C--C-ceeeE--ecCCCCccc----hhhhHHHHHH
Confidence 35676 58999999877 454 66643 344432 11111 0 0 00000 123444443 2333344578
Q ss_pred HHHCCCCEEE--ecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEe---ccCCCCCccHHHHHHHHHH
Q 020423 146 ANAYNYDEIN--LNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKC---RIGVDDHDSYNQLCDFIYK 220 (326)
Q Consensus 146 a~~aG~d~Ie--in~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~---r~g~~~~~~~~e~~~~ia~ 220 (326)
+.+.|+|+|| +|++| .+.+ +.+.+.+.+++++++++ |+.+|+ +.++++ ++..+ +++
T Consensus 79 A~~~Gad~Id~viN~g~-----~~~~--------~~~~~~~~i~~v~~a~~-pv~vKvi~e~~~l~~----~~~~~-~a~ 139 (225)
T 1mzh_A 79 AVRDGAQELDIVWNLSA-----FKSE--------KYDFVVEELKEIFRETP-SAVHKVIVETPYLNE----EEIKK-AVE 139 (225)
T ss_dssp HHHTTCSEEEEECCHHH-----HHTT--------CHHHHHHHHHHHHHTCT-TSEEEEECCGGGCCH----HHHHH-HHH
T ss_pred HHHcCCCEEEEEecHHH-----HhcC--------ChHHHHHHHHHHHHHhc-CceEEEEEeCCCCCH----HHHHH-HHH
Confidence 8889999999 67776 2223 24567777999999888 999999 655432 23333 566
Q ss_pred HhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcC-CCceEEEeCCCCCHHHHHHHHHhCCChhhhhHH
Q 020423 221 VSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF-PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRA 298 (326)
Q Consensus 221 ~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~-~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRa 298 (326)
.++++|+|+|..+.+. ..| ...++.++.+++.. .++||+++|||+|++++.++++.|||.|+++++
T Consensus 140 ~a~eaGad~I~tstg~--~~g----------ga~~~~i~~v~~~v~~~ipVia~GGI~t~~da~~~l~aGA~~iG~s~~ 206 (225)
T 1mzh_A 140 ICIEAGADFIKTSTGF--APR----------GTTLEEVRLIKSSAKGRIKVKASGGIRDLETAISMIEAGADRIGTSSG 206 (225)
T ss_dssp HHHHHTCSEEECCCSC--SSS----------CCCHHHHHHHHHHHTTSSEEEEESSCCSHHHHHHHHHTTCSEEEESCH
T ss_pred HHHHhCCCEEEECCCC--CCC----------CCCHHHHHHHHHHhCCCCcEEEECCCCCHHHHHHHHHhCchHHHHccH
Confidence 7788999999544321 111 12467776666543 279999999999999999999999996655554
|
| >3o07_A Pyridoxine biosynthesis protein SNZ1; (beta/alpha)8-barrel, pyridoxal 5-phosphate synthase, PLP G3 SNO1, biosynthetic protein; HET: 1GP; 1.80A {Saccharomyces cerevisiae} PDB: 3o06_A 3o05_A* 3fem_A | Back alignment and structure |
|---|
Probab=99.40 E-value=5.4e-13 Score=119.75 Aligned_cols=163 Identities=18% Similarity=0.208 Sum_probs=116.0
Q ss_pred HHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHH
Q 020423 140 AKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIY 219 (326)
Q Consensus 140 ~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia 219 (326)
.+.|+.++++|+..|....+||.. .|..+ |.+-+++|+.+.+ |++++.+||.-|.|.|. +. + +
T Consensus 21 ~eqa~iae~aGa~av~~l~~~p~d--~r~~g-Gv~Rm~dp~~I~~----I~~aVsIPVm~k~righ-----~~---E--A 83 (291)
T 3o07_A 21 PEQAKIAEKSGACAVMALESIPAD--MRKSG-KVCRMSDPKMIKD----IMNSVSIPVMAKVRIGH-----FV---E--A 83 (291)
T ss_dssp HHHHHHHHHHTCSEEEECSSCHHH--HHTTT-CCCCCCCHHHHHH----HHTTCSSCEEEEEETTC-----HH---H--H
T ss_pred HHHHHHHHHhCchhhhhccCCCch--hhhcC-CccccCCHHHHHH----HHHhCCCCeEEEEecCc-----HH---H--H
Confidence 456888999999999999999985 33333 5567788876554 56778999999999974 22 2 4
Q ss_pred HHhhhCCccEEEEecCCc----------c-cC-------------------C----------------------------
Q 020423 220 KVSSLSPTRHFIIHSRKA----------L-LN-------------------G---------------------------- 241 (326)
Q Consensus 220 ~~le~~Gvd~I~v~~~~~----------~-~~-------------------g---------------------------- 241 (326)
++++..|+|+|+-+.... . .+ |
T Consensus 84 qilea~GaD~IDesevltpad~~~~I~k~~f~vpfv~~~~~l~EAlrri~eGA~mIrTtge~gtg~v~~av~h~r~~~~~ 163 (291)
T 3o07_A 84 QIIEALEVDYIDESEVLTPADWTHHIEKDKFKVPFVCGAKDLGEALRRINEGAAMIRTKGEAGTGDVSEAVKHIRRITEE 163 (291)
T ss_dssp HHHHHTTCSEEEEETTSCCSCSSCCCCGGGCSSCEEEEESSHHHHHHHHHHTCSEEEECCCTTSCCTHHHHHHHHHHHHH
T ss_pred HHHHHcCCCEEecccCCCHHHHHHHhhhhcCCCcEEeeCCCHHHHHHHHHCCCCEEEecCcCCCccHHHHHHHHHHHHHH
Confidence 567788999987653210 0 00 0
Q ss_pred ------C-CcCCc--C-CCCCccHHHHHHHHhcCCCceE--EEeCCCCCHHHHHHHHHhCCChhhhhHHHHh--CCchhH
Q 020423 242 ------I-SPAEN--R-TIPPLKYEYYYALLRDFPDLTF--TLNGGINTVDEVNAALRKGAHHVMVGRAAYQ--NPWYTL 307 (326)
Q Consensus 242 ------~-~~~~~--~-~~~~~~~~~i~~i~~~~~~iPV--Ia~GgI~s~~da~~~l~~GaD~V~iGRall~--dP~l~~ 307 (326)
+ ...+. . .....+|++++++++. +++|| |++|||.|++++.++++.|||+|+|||+++. ||+.+.
T Consensus 164 i~~l~g~~t~~el~~~a~~~~ad~elI~~Ike~-~~IPVV~IAnGGI~TpedA~~~le~GaDGVmVGrAI~~s~DP~~~A 242 (291)
T 3o07_A 164 IKACQQLKSEDDIAKVAEEMRVPVSLLKDVLEK-GKLPVVNFAAGGVATPADAALLMQLGCDGVFVGSGIFKSSNPVRLA 242 (291)
T ss_dssp HHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHH-TSCSSCEEBCSSCCSHHHHHHHHHTTCSCEEECGGGGGSSCHHHHH
T ss_pred HHHHHcCCCHHHhhhcccccCCCHHHHHHHHHc-cCCCEEEecCCCCCCHHHHHHHHHhCCCEEEEchHHhCCCCHHHHH
Confidence 1 00000 0 0002348888888776 58998 5699999999999999999999999999997 677777
Q ss_pred HhHHHhhhCCCCC
Q 020423 308 GHVDTAIYGAPSS 320 (326)
Q Consensus 308 ~~i~~~~~~~~~~ 320 (326)
+.+...+....+|
T Consensus 243 kafv~Av~~~~~~ 255 (291)
T 3o07_A 243 TAVVEATTHFDNP 255 (291)
T ss_dssp HHHHHHHHTTTCH
T ss_pred HHHHHHHHhccCH
Confidence 7777776655544
|
| >2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=9.7e-12 Score=111.27 Aligned_cols=155 Identities=14% Similarity=0.224 Sum_probs=109.5
Q ss_pred CCCcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC----CCc--
Q 020423 123 EQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT----NVP-- 196 (326)
Q Consensus 123 ~~~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~----~~p-- 196 (326)
.+.|+++..+-.++++ ++.+.++|+|.|-++. .++.+++++.++++.+.... +.+
T Consensus 73 ~~ipv~v~ggi~~~~~----~~~~l~~Gad~V~lg~---------------~~l~~p~~~~~~~~~~g~~~~~~ld~~~~ 133 (244)
T 2y88_A 73 LDVQVELSGGIRDDES----LAAALATGCARVNVGT---------------AALENPQWCARVIGEHGDQVAVGLDVQII 133 (244)
T ss_dssp CSSEEEEESSCCSHHH----HHHHHHTTCSEEEECH---------------HHHHCHHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred cCCcEEEECCCCCHHH----HHHHHHcCCCEEEECc---------------hHhhChHHHHHHHHHcCCCEEEEEecccc
Confidence 4678888876677764 5555668999998742 33456888888888875432 222
Q ss_pred ---EEEEeccCCCCCc-cHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEE
Q 020423 197 ---VSVKCRIGVDDHD-SYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTL 272 (326)
Q Consensus 197 ---v~vK~r~g~~~~~-~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa 272 (326)
..||++ +|.+.. +..+. ++.+++.|++.|.+|+++.. +. . ...+++.+.++.+. .++|||+
T Consensus 134 ~~~~~v~~~-g~~~~~~~~~e~----~~~~~~~G~~~i~~~~~~~~--~~------~-~g~~~~~~~~l~~~-~~ipvia 198 (244)
T 2y88_A 134 DGEHRLRGR-GWETDGGDLWDV----LERLDSEGCSRFVVTDITKD--GT------L-GGPNLDLLAGVADR-TDAPVIA 198 (244)
T ss_dssp TTEEEEEEG-GGTEEEEEHHHH----HHHHHHTTCCCEEEEETTTT--TT------T-SCCCHHHHHHHHTT-CSSCEEE
T ss_pred CCCCEEEEC-CccCCCCCHHHH----HHHHHhCCCCEEEEEecCCc--cc------c-CCCCHHHHHHHHHh-CCCCEEE
Confidence 246666 665422 22232 33456789999999987642 11 0 11258888888765 4999999
Q ss_pred eCCCCCHHHHHHHHHh---CCChhhhhHHHHhCCchhHHhHHH
Q 020423 273 NGGINTVDEVNAALRK---GAHHVMVGRAAYQNPWYTLGHVDT 312 (326)
Q Consensus 273 ~GgI~s~~da~~~l~~---GaD~V~iGRall~dP~l~~~~i~~ 312 (326)
+|||.+++++.++++. |||+|++||+++.+|+. ..++.+
T Consensus 199 ~GGI~~~~d~~~~~~~~~~Gad~v~vG~al~~~~~~-~~~~~~ 240 (244)
T 2y88_A 199 SGGVSSLDDLRAIATLTHRGVEGAIVGKALYARRFT-LPQALA 240 (244)
T ss_dssp ESCCCSHHHHHHHHTTGGGTEEEEEECHHHHTTSSC-HHHHHH
T ss_pred ECCCCCHHHHHHHHhhccCCCCEEEEcHHHHCCCcC-HHHHHH
Confidence 9999999999999987 99999999999999995 444444
|
| >2yzr_A Pyridoxal biosynthesis lyase PDXS; redox protein, pyridoxal phosphate, structural genomi NPPSFA; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.31 E-value=2.4e-12 Score=118.67 Aligned_cols=171 Identities=19% Similarity=0.223 Sum_probs=109.5
Q ss_pred HHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCC-----------
Q 020423 140 AKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDH----------- 208 (326)
Q Consensus 140 ~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~----------- 208 (326)
.+.|+.++++|+++|.... |.++..|... |..++++++.+.++.+ ++++||..|.|.||.+.
T Consensus 27 ~e~A~~ae~aGA~aI~~l~--~v~~d~~~~~-G~arm~~p~~i~~I~~----av~iPV~~K~rig~~~e~qilea~GaD~ 99 (330)
T 2yzr_A 27 VEQAQIAEEAGAVAVMALE--RVPADIRAAG-GVARMSDPALIEEIMD----AVSIPVMAKCRIGHTTEALVLEAIGVDM 99 (330)
T ss_dssp HHHHHHHHHHTCSEEEECS--SCHHHHC--C-CCCCCCCHHHHHHHHH----HCSSCEEEEEETTCHHHHHHHHHTTCSE
T ss_pred HHHHHHHHHcCCCEEEecC--CccccccCCc-chhhcCCHHHHHHHHH----hcCCCeEEEEeecchHHHHHHHHcCCCE
Confidence 5688888999999995543 5555555544 6689999999888764 56899999999987310
Q ss_pred -------------c-------------cHHHHHHHHHHHhhhCCccEEEEec--------------CC------------
Q 020423 209 -------------D-------------SYNQLCDFIYKVSSLSPTRHFIIHS--------------RK------------ 236 (326)
Q Consensus 209 -------------~-------------~~~e~~~~ia~~le~~Gvd~I~v~~--------------~~------------ 236 (326)
. ...++-+.+. .. +.|+++|.+|| |+
T Consensus 100 Id~s~~l~p~d~~~~i~k~~~~~~~~~~a~~lgea~r-~~-~~Ga~~i~t~ge~g~~~~ve~v~H~r~~~~~~~~~s~~~ 177 (330)
T 2yzr_A 100 IDESEVLTQADPFFHIYKKKFNVPFVCGARNLGEAVR-RI-WEGAAMIRTKGEAGTGNIVEAVRHMRLMNEAIAQLQRMT 177 (330)
T ss_dssp EEEETTSCCSCSSCCCCGGGCSSCEEEECSSHHHHHH-HH-HHTCSEEEECCCTTSCCTHHHHHHHHHHHHHHHHHTTSC
T ss_pred EehhccCCHHHHHHHhhhhhcccchhhccccHHHHHH-HH-hcCcceeeccCCCCcccchhHHHHHHHHHHHHHHhccCC
Confidence 0 0001222222 22 46777777777 11
Q ss_pred c--ccCC--CCcCCc---------------CC--CC------------CccHHHHHHHHhcCCCceE--EEeCCCCCHHH
Q 020423 237 A--LLNG--ISPAEN---------------RT--IP------------PLKYEYYYALLRDFPDLTF--TLNGGINTVDE 281 (326)
Q Consensus 237 ~--~~~g--~~~~~~---------------~~--~~------------~~~~~~i~~i~~~~~~iPV--Ia~GgI~s~~d 281 (326)
. .+.. ..+.++ +. .. ...++.+.++.+.. ++|| |+.|||.|+++
T Consensus 178 ~~El~~~A~~~gadyv~~~~~vt~~~G~~~r~Lg~G~Vf~T~TK~~~~~~~lell~~i~~~~-~IPVV~VAeGGI~Tped 256 (330)
T 2yzr_A 178 DEEVYGVAKFYANRYAELAKTVREGMGLPATVLENEPIYEGFTLAEIIDGLYEVLLEVKKLG-RLPVVNFAAGGVATPAD 256 (330)
T ss_dssp HHHHHHHHHHHHGGGGHHHHHHHHHTTSCSCCCTTSEEETTEEHHHHHHHHHHHHHHHHHHT-SCSSEEEECSCCCSHHH
T ss_pred HHHHHHHHHHcCCCEeecccchhhhccccccccccccccCCCcccCCCcchHHHHHHHHHhC-CCCeEEEEECCCCCHHH
Confidence 0 0000 000000 00 00 01126676766654 8998 69999999999
Q ss_pred HHHHHHhCCChhhhhHHHH--hCCchhHHhHHHhhhCCCCC
Q 020423 282 VNAALRKGAHHVMVGRAAY--QNPWYTLGHVDTAIYGAPSS 320 (326)
Q Consensus 282 a~~~l~~GaD~V~iGRall--~dP~l~~~~i~~~~~~~~~~ 320 (326)
+.++++.|||+|+|||+++ .||....+.+.+.+....+|
T Consensus 257 a~~~l~~GaDgV~VGsaI~~a~dP~~aar~l~~ai~~~~~~ 297 (330)
T 2yzr_A 257 AALMMQLGSDGVFVGSGIFKSENPLERARAIVEATYNYDKP 297 (330)
T ss_dssp HHHHHHTTCSCEEESHHHHTSSCHHHHHHHHHHHHHTTTCH
T ss_pred HHHHHHcCcCEEeeHHHHhcCCCHHHHHHHHHHHHHhcCCH
Confidence 9999999999999999999 67777777777666554443
|
| >2uva_G Fatty acid synthase beta subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; HET: FMN; 3.10A {Thermomyces lanuginosus} PDB: 2uvc_G* | Back alignment and structure |
|---|
Probab=99.26 E-value=2.8e-11 Score=135.37 Aligned_cols=214 Identities=13% Similarity=0.038 Sum_probs=138.3
Q ss_pred CCcEEEccCC-CCChHHHHHHHHHcCCCcEE-EecceeeccccccccchhhhhhcCCCCCcEEEEecCCCHH---HHHHH
Q 020423 68 PPWFSVAPMM-DWTDNHYRTLARLISKHAWL-YTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSNLD---NLAKA 142 (326)
Q Consensus 68 ~nrivlAPM~-~~s~~~~r~~~~~~Gg~gli-~te~~~~~~~~~~~~~~~~~~~~~~~~~piivQL~g~~~~---~f~~a 142 (326)
+.+|++|||. ++++..+...+.++||.|.+ ..++...+.+... +++..+..+.++|+++|++..+++ .+.+.
T Consensus 582 ~~PIi~a~M~~~vs~~~LaaAva~aGglG~i~g~g~~~~e~l~~~---i~~vk~~~~~~~p~gvN~~~~~p~~~~~~~~~ 658 (2060)
T 2uva_G 582 VPPVMVAGMTPTTVPWDFVAATMNAGYHIELAGGGYYNAQKMSDA---ISKIEKAIPPGRGITVNLIYVNPRAMGWQIPL 658 (2060)
T ss_dssp SCSEEECCCTTTTCSHHHHHHHHHTTCEECEEGGGCCSHHHHHHH---HHHHGGGSCTTCCEEEEEETTCTTHHHHHHHH
T ss_pred cceEEecCCCCccccHHHHHHHHHCCCEEEECcCCCCCHHHHHHH---HHHHHhhcccCCCeEecccccCcccchhHHHH
Confidence 6799999999 68999999999999998877 3333333332222 222222222368999999875543 35677
Q ss_pred HHHHHHCCCCE--EEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHHH
Q 020423 143 TELANAYNYDE--INLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYK 220 (326)
Q Consensus 143 A~~a~~aG~d~--Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia~ 220 (326)
.+.+.+.|++. |.+..|.|. .+ ++++.+++ .++++... -.+ ..+..+.+.
T Consensus 659 ~~~~~~~gv~i~gv~~~~G~p~----------------~e---~~~~~l~~-~gi~~i~~-v~~------~~~a~~~v~- 710 (2060)
T 2uva_G 659 LGRLRADGVPIEGLTIGAGVPS----------------IE---VANEYIQT-LGIRHISF-KPG------SVDAIQQVI- 710 (2060)
T ss_dssp HHHHHTTTCCEEEEEEESSCCC----------------HH---HHHHHHHH-SCCSEEEE-CCC------SHHHHHHHH-
T ss_pred HHHHHHcCCCcceEeecCCCCC----------------HH---HHHHHHHH-cCCeEEEe-cCC------HHHHHHHHH-
Confidence 78888999888 888776553 22 23333333 37777633 222 122223222
Q ss_pred HhhhCCccEEE---EecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHH-----------
Q 020423 221 VSSLSPTRHFI---IHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAAL----------- 286 (326)
Q Consensus 221 ~le~~Gvd~I~---v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l----------- 286 (326)
.+.++|+|.|+ ++|.+. +|+.+. ..........+.++++. .++|||+.|||.+++++.+++
T Consensus 711 ~l~~aG~D~iV~~q~~G~ea--GGH~g~--~d~~~~~l~lv~~i~~~-~~ipviaaGGI~~g~~i~aaltg~ws~~~g~p 785 (2060)
T 2uva_G 711 NIAKANPTFPIILQWTGGRG--GGHHSF--EDFHQPILLMYSRIRKC-SNIVLVAGSGFGGSEDTYPYLTGSWSTKFGYP 785 (2060)
T ss_dssp HHHHHCTTSCEEEEECCTTS--SSSCCS--CCSHHHHHHHHHHHHTS-TTEEEEEESSCCSHHHHHHHHHTCGGGTTTSC
T ss_pred HHHHcCCCEEEEeeeEcccC--CCCCCc--ccccchHHHHHHHHHHH-cCCCEEEeCCCCCHHHHHHHhcCcchhhcCCC
Confidence 34578999999 787654 233221 01112235677777765 499999999999999999999
Q ss_pred HhCCChhhhhHHHHhCCch-hHHhHHHhhhCC
Q 020423 287 RKGAHHVMVGRAAYQNPWY-TLGHVDTAIYGA 317 (326)
Q Consensus 287 ~~GaD~V~iGRall~dP~l-~~~~i~~~~~~~ 317 (326)
..|||+|+||+.++...+- .....++.+...
T Consensus 786 alGAdgV~~GT~f~~t~Ea~~s~~~K~~lv~a 817 (2060)
T 2uva_G 786 PMPFDGCMFGSRMMTAKEAHTSKQAKQAIVDA 817 (2060)
T ss_dssp CCCCSCEEESGGGGGBTTSCCCHHHHHHHHTS
T ss_pred CCCCCEEEEchhhhcCcCCCCCHHHHHHHHhC
Confidence 8999999999999987553 233444444443
|
| >1wv2_A Thiazole moeity, thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI; 2.90A {Pseudomonas aeruginosa} SCOP: c.1.31.1 | Back alignment and structure |
|---|
Probab=99.26 E-value=3e-09 Score=94.83 Aligned_cols=221 Identities=12% Similarity=0.097 Sum_probs=136.5
Q ss_pred CccccccCeecCCcEEEccCCCCChH-HHHHHHHHcCCCcEEEecceeeccccccccchhhhhh-cCCCCCcEEEEecC-
Q 020423 57 TKAEMVARQYLPPWFSVAPMMDWTDN-HYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLA-FSPEQHPIVLQIGG- 133 (326)
Q Consensus 57 ~~p~~ig~~~l~nrivlAPM~~~s~~-~~r~~~~~~Gg~gli~te~~~~~~~~~~~~~~~~~~~-~~~~~~piivQL~g- 133 (326)
-++++|++.++..|+++. -..+.+. .++...++.| ..++..-.=.+ .+.+ ....+.+++ +.+.+..+..|-.|
T Consensus 8 ~d~l~i~~~~f~SRl~~G-tgky~~~~~~~~a~~asg-~e~vtva~rR~-~~~~-~~~~~~~~~~i~~~~~~~lpNTag~ 83 (265)
T 1wv2_A 8 DTPFVIAGRTYGSRLLVG-TGKYKDLDETRRAIEASG-AEIVTVAVRRT-NIGQ-NPDEPNLLDVIPPDRYTILPNTAGC 83 (265)
T ss_dssp -CCEEETTEEESCCEEEC-CSCSSSHHHHHHHHHHSC-CSEEEEEGGGC-CC--------------CTTTSEEEEECTTC
T ss_pred CCCeEECCEEeecceEEe-cCCCCCHHHHHHHHHHhC-CCeEEEEEEee-cccc-CCCcchHHhhhhhcCCEECCcCCCC
Confidence 467999999999999883 3346555 4455555544 55544333221 1100 111233333 33345567777654
Q ss_pred CCHHHHHHHHHHHHH-C-CCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccH
Q 020423 134 SNLDNLAKATELANA-Y-NYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSY 211 (326)
Q Consensus 134 ~~~~~f~~aA~~a~~-a-G~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~ 211 (326)
.+.++-++.|+.++| + |-++|.|-.-.-. . .++.++....+..+.+.+. |+.+..-+.. ++
T Consensus 84 ~ta~eAv~~a~lare~~~~~~~iKlEv~~d~-------~---~llpD~~~tv~aa~~L~~~-Gf~Vlpy~~d------d~ 146 (265)
T 1wv2_A 84 YDAVEAVRTCRLARELLDGHNLVKLEVLADQ-------K---TLFPNVVETLKAAEQLVKD-GFDVMVYTSD------DP 146 (265)
T ss_dssp CSHHHHHHHHHHHHTTTTSCCEEEECCBSCT-------T---TCCBCHHHHHHHHHHHHTT-TCEEEEEECS------CH
T ss_pred CCHHHHHHHHHHHHHHcCCCCeEEEEeecCc-------c---ccCcCHHHHHHHHHHHHHC-CCEEEEEeCC------CH
Confidence 688999999999999 5 5688877542111 1 1335666666666655432 5554422221 12
Q ss_pred HHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCC
Q 020423 212 NQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAH 291 (326)
Q Consensus 212 ~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD 291 (326)
. +++.+++.|.+.+...+..- |.. ....+++++..+++. +++|||+.|||.+++|+..+++.|||
T Consensus 147 ~-----~akrl~~~G~~aVmPlg~pI---GsG------~Gi~~~~lI~~I~e~-~~vPVI~eGGI~TPsDAa~AmeLGAd 211 (265)
T 1wv2_A 147 I-----IARQLAEIGCIAVMPLAGLI---GSG------LGICNPYNLRIILEE-AKVPVLVDAGVGTASDAAIAMELGCE 211 (265)
T ss_dssp H-----HHHHHHHSCCSEEEECSSST---TCC------CCCSCHHHHHHHHHH-CSSCBEEESCCCSHHHHHHHHHHTCS
T ss_pred H-----HHHHHHHhCCCEEEeCCccC---CCC------CCcCCHHHHHHHHhc-CCCCEEEeCCCCCHHHHHHHHHcCCC
Confidence 1 35677889999997655421 110 112347888888775 59999999999999999999999999
Q ss_pred hhhhhHHHHh--CCchhHHhHHHh
Q 020423 292 HVMVGRAAYQ--NPWYTLGHVDTA 313 (326)
Q Consensus 292 ~V~iGRall~--dP~l~~~~i~~~ 313 (326)
+|.+|+++.. ||..+.+.+...
T Consensus 212 gVlVgSAI~~a~dP~~ma~af~~A 235 (265)
T 1wv2_A 212 AVLMNTAIAHAKDPVMMAEAMKHA 235 (265)
T ss_dssp EEEESHHHHTSSSHHHHHHHHHHH
T ss_pred EEEEChHHhCCCCHHHHHHHHHHH
Confidence 9999999974 677666555543
|
| >1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A | Back alignment and structure |
|---|
Probab=99.24 E-value=8.9e-11 Score=105.10 Aligned_cols=153 Identities=16% Similarity=0.200 Sum_probs=104.5
Q ss_pred CCCcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEE--
Q 020423 123 EQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVK-- 200 (326)
Q Consensus 123 ~~~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK-- 200 (326)
.+.|+++..+-.++++ ++.+.++|+|.|-++. ..+.+++++.++++.....+...+.++
T Consensus 74 ~~ipv~v~ggI~~~~~----~~~~l~~Gad~V~lg~---------------~~l~~p~~~~~~~~~~g~~~~~~l~~~~g 134 (244)
T 1vzw_A 74 MDIKVELSGGIRDDDT----LAAALATGCTRVNLGT---------------AALETPEWVAKVIAEHGDKIAVGLDVRGT 134 (244)
T ss_dssp CSSEEEEESSCCSHHH----HHHHHHTTCSEEEECH---------------HHHHCHHHHHHHHHHHGGGEEEEEEEETT
T ss_pred cCCcEEEECCcCCHHH----HHHHHHcCCCEEEECc---------------hHhhCHHHHHHHHHHcCCcEEEEEEccCC
Confidence 4678888876677664 5556668999988742 233568888888887654333334433
Q ss_pred --eccCCCCCc-cHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCC
Q 020423 201 --CRIGVDDHD-SYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGIN 277 (326)
Q Consensus 201 --~r~g~~~~~-~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~ 277 (326)
.+.+|.+.. +..+. ++.+++.|+|.|.+++.+.. +. . ...+++.+.++.+.. ++|||++|||.
T Consensus 135 ~v~~~g~~~~~~~~~e~----~~~~~~~G~~~i~~~~~~~~--~~------~-~g~~~~~~~~i~~~~-~ipvia~GGI~ 200 (244)
T 1vzw_A 135 TLRGRGWTRDGGDLYET----LDRLNKEGCARYVVTDIAKD--GT------L-QGPNLELLKNVCAAT-DRPVVASGGVS 200 (244)
T ss_dssp EECCSSSCCCCCBHHHH----HHHHHHTTCCCEEEEEC----------------CCCHHHHHHHHHTC-SSCEEEESCCC
T ss_pred EEEEcCcccCCCCHHHH----HHHHHhCCCCEEEEeccCcc--cc------c-CCCCHHHHHHHHHhc-CCCEEEECCCC
Confidence 123554432 33332 23456799999999986541 11 0 112588888887764 89999999999
Q ss_pred CHHHHHHHHHh---CCChhhhhHHHHhCCchhHH
Q 020423 278 TVDEVNAALRK---GAHHVMVGRAAYQNPWYTLG 308 (326)
Q Consensus 278 s~~da~~~l~~---GaD~V~iGRall~dP~l~~~ 308 (326)
+++++.++++. |||+|++||+++.+|+.+.+
T Consensus 201 ~~~d~~~~~~~~~~Gadgv~vG~al~~~~~~~~~ 234 (244)
T 1vzw_A 201 SLDDLRAIAGLVPAGVEGAIVGKALYAKAFTLEE 234 (244)
T ss_dssp SHHHHHHHHTTGGGTEEEEEECHHHHTTSSCHHH
T ss_pred CHHHHHHHHhhccCCCceeeeeHHHHcCCCCHHH
Confidence 99999999997 99999999999999985433
|
| >1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=6.8e-11 Score=117.25 Aligned_cols=140 Identities=17% Similarity=0.057 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC-CCcEEEEeccCCCCCccHHHHHH
Q 020423 138 NLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCD 216 (326)
Q Consensus 138 ~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~-~~pv~vK~r~g~~~~~~~~e~~~ 216 (326)
+..+.++++.++|+|.|+||.++. .+++..++++++++.+ +.|+.+|-- .+.++
T Consensus 255 ~~~~~a~~~~~aG~d~v~i~~~~G----------------~~~~~~~~i~~i~~~~~~~pvi~~~v------~t~~~--- 309 (514)
T 1jcn_A 255 DDKYRLDLLTQAGVDVIVLDSSQG----------------NSVYQIAMVHYIKQKYPHLQVIGGNV------VTAAQ--- 309 (514)
T ss_dssp THHHHHHHHHHTTCSEEEECCSCC----------------CSHHHHHHHHHHHHHCTTCEEEEEEE------CSHHH---
T ss_pred hhHHHHHHHHHcCCCEEEeeccCC----------------cchhHHHHHHHHHHhCCCCceEeccc------chHHH---
Confidence 356677888899999999997542 1357789999999988 889988611 22322
Q ss_pred HHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCC-CccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhh
Q 020423 217 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIP-PLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMV 295 (326)
Q Consensus 217 ~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~-~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~i 295 (326)
++.++++|+|+|.+..+...............+ +..+..+.++.+.. ++|||++|||.+++|+.++++.|||+|++
T Consensus 310 --a~~l~~aGad~I~vg~~~G~~~~t~~~~~~g~~~~~~~~~~~~~~~~~-~ipVia~GGI~~~~di~kala~GAd~V~i 386 (514)
T 1jcn_A 310 --AKNLIDAGVDGLRVGMGCGSICITQEVMACGRPQGTAVYKVAEYARRF-GVPIIADGGIQTVGHVVKALALGASTVMM 386 (514)
T ss_dssp --HHHHHHHTCSEEEECSSCSCCBTTBCCCSCCCCHHHHHHHHHHHHGGG-TCCEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred --HHHHHHcCCCEEEECCCCCcccccccccCCCccchhHHHHHHHHHhhC-CCCEEEECCCCCHHHHHHHHHcCCCeeeE
Confidence 344567999999993211100000000000111 22356667777664 89999999999999999999999999999
Q ss_pred hHHHHhCCch
Q 020423 296 GRAAYQNPWY 305 (326)
Q Consensus 296 GRall~dP~l 305 (326)
||+++.+|+.
T Consensus 387 G~~~l~~~e~ 396 (514)
T 1jcn_A 387 GSLLAATTEA 396 (514)
T ss_dssp STTTTTSTTS
T ss_pred CHHHHcCCcC
Confidence 9999998863
|
| >1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A | Back alignment and structure |
|---|
Probab=99.16 E-value=3e-11 Score=120.73 Aligned_cols=211 Identities=8% Similarity=0.030 Sum_probs=125.5
Q ss_pred HHcCCCcEEEecceeecccccccc-chhhhhhcCCCCCcEEEEecCCC--HHH-------HHHHHHHHHHCCCCEEEecC
Q 020423 89 RLISKHAWLYTEMLAAETIIYQQG-NLDRFLAFSPEQHPIVLQIGGSN--LDN-------LAKATELANAYNYDEINLNC 158 (326)
Q Consensus 89 ~~~Gg~gli~te~~~~~~~~~~~~-~~~~~~~~~~~~~piivQL~g~~--~~~-------f~~aA~~a~~aG~d~Iein~ 158 (326)
.+.|.-++.+.+............ ..+.+.++.+ ..++-+|+.|.- .++ ..+.++.+.++|+|.|.|+.
T Consensus 290 ~~~Ga~~l~~~dl~~~~~~~~~~~~~~~~i~~i~~-~~~ipi~vgGGIr~~~d~~~~~~~~~~~a~~~l~aGad~V~igt 368 (555)
T 1jvn_A 290 YQQGADEVTFLNITSFRDCPLKDTPMLEVLKQAAK-TVFVPLTVGGGIKDIVDVDGTKIPALEVASLYFRSGADKVSIGT 368 (555)
T ss_dssp HHTTCSEEEEEEEC---CCCGGGCHHHHHHHHHTT-TCCSCEEEESSCSCEECTTCCEECHHHHHHHHHHHTCSEEEECH
T ss_pred HHcCCCEEEEEeCCccccccCCCchHHHHHHHHHh-hCCCcEEEeCccccchhcccccchHHHHHHHHHHcCCCEEEECC
Confidence 344544677777654332111111 1111112222 234556776633 212 44677778889999999997
Q ss_pred CCCCCcccCCCCccccccCCHHHHHHHHHHHHh-cCCCcEEEE--------------------------------eccCC
Q 020423 159 GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAA-NTNVPVSVK--------------------------------CRIGV 205 (326)
Q Consensus 159 g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~-~~~~pv~vK--------------------------------~r~g~ 205 (326)
.|-. +..+... ++..+.+++++.++.+..-+ .+-..+.+| ...||
T Consensus 369 ~~~~-~~~~~~~-~~~~~~~~~~i~~~~~~~g~~~ivv~iD~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~Gw 446 (555)
T 1jvn_A 369 DAVY-AAEKYYE-LGNRGDGTSPIETISKAYGAQAVVISVDPKRVYVNSQADTKNKVFETEYPGPNGEKYCWYQCTIKGG 446 (555)
T ss_dssp HHHH-HHHHHHH-TTSCCCSCSHHHHHHHHHCGGGEEEEECEEEEEESSGGGCSSCCEECSSCCTTCCCEEEEEEEETTT
T ss_pred HHhh-Cchhhcc-ccccccCHHHHHHHHHHhCCCcEEEEEEccccccccccccccccccccccCCCCCcceeEEEEEecC
Confidence 7621 1000000 22345778999999887742 221222222 11244
Q ss_pred CCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHH
Q 020423 206 DDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAA 285 (326)
Q Consensus 206 ~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~ 285 (326)
.+.... +..+ .++.+++.|++.|.+|+++.. |.. ...+|++++++.+.. ++|||++|||.+++|+.++
T Consensus 447 ~~~~~~-~~~e-~a~~~~~~Ga~~il~t~~~~d--G~~-------~G~d~~li~~l~~~~-~iPVIasGGi~s~~d~~~~ 514 (555)
T 1jvn_A 447 RESRDL-GVWE-LTRACEALGAGEILLNCIDKD--GSN-------SGYDLELIEHVKDAV-KIPVIASSGAGVPEHFEEA 514 (555)
T ss_dssp TEEEEE-EHHH-HHHHHHHTTCCEEEECCGGGT--TTC-------SCCCHHHHHHHHHHC-SSCEEECSCCCSHHHHHHH
T ss_pred ccCCCC-CHHH-HHHHHHHcCCCEEEEeCCCCC--CCC-------CCCCHHHHHHHHHhC-CccEEEECCCCCHHHHHHH
Confidence 432211 1122 345667899999999987641 210 113589998888764 9999999999999999999
Q ss_pred HH-hCCChhhhhHHHHhCCchhHHhHHHhhh
Q 020423 286 LR-KGAHHVMVGRAAYQNPWYTLGHVDTAIY 315 (326)
Q Consensus 286 l~-~GaD~V~iGRall~dP~l~~~~i~~~~~ 315 (326)
++ .|||+|++||+++.+++. ..++.+.+.
T Consensus 515 ~~~~G~~gvivg~a~~~~~~~-~~e~~~~l~ 544 (555)
T 1jvn_A 515 FLKTRADACLGAGMFHRGEFT-VNDVKEYLL 544 (555)
T ss_dssp HHHSCCSEEEESHHHHTTSCC-HHHHHHHHH
T ss_pred HHhcCChHHHHHHHHHcCCCC-HHHHHHHHH
Confidence 98 899999999999999995 555555443
|
| >1xm3_A Thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI, NESG, northeast structural genomics consortium; 1.80A {Bacillus subtilis} SCOP: c.1.31.1 PDB: 1tyg_A | Back alignment and structure |
|---|
Probab=99.14 E-value=1.5e-09 Score=98.56 Aligned_cols=209 Identities=11% Similarity=0.042 Sum_probs=118.6
Q ss_pred ccccccCeecCCcEEEccCCCCChHHHHHHHHHcCCCcEEEecceeeccccccccchhhhhh-cCCCCCcEEEEecC-CC
Q 020423 58 KAEMVARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLA-FSPEQHPIVLQIGG-SN 135 (326)
Q Consensus 58 ~p~~ig~~~l~nrivlAPM~~~s~~~~r~~~~~~Gg~gli~te~~~~~~~~~~~~~~~~~~~-~~~~~~piivQL~g-~~ 135 (326)
+|++|++++++||++++.-...+-..+.....+ +|+.++-.+.=..+.. ....+.+++ +.+...+++.|..+ .+
T Consensus 2 ~~~~i~~~~~~~~~~~~t~g~p~~~~~~~~l~~-~Gad~ielg~pr~~~~---g~~~~~~~~~l~~~~~~~~pn~~~~~~ 77 (264)
T 1xm3_A 2 SMLTIGGKSFQSRLLLGTGKYPSFDIQKEAVAV-SESDILTFAVRRMNIF---EASQPNFLEQLDLSKYTLLPNTAGAST 77 (264)
T ss_dssp CCEEETTEEESCCEEEECSCSSCHHHHHHHHHH-HTCSEEEEETTSSTTC----------CTTCCGGGSEEEEECTTCSS
T ss_pred CCeEECCEEecCCCEEEecCCCCHHHHHHHHHH-cCCeEEEEcccccccC---CCCHHHHHHHHHhcCCeEcCCccccCC
Confidence 578999999999999876544343344433333 3577774443111110 112233322 22234566678765 67
Q ss_pred HHHHHHHHHHHHHCC-CCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC--CCcEEEEeccCCCCCccHH
Q 020423 136 LDNLAKATELANAYN-YDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYN 212 (326)
Q Consensus 136 ~~~f~~aA~~a~~aG-~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~--~~pv~vK~r~g~~~~~~~~ 212 (326)
+++..+.++.++++| .+.|+++.- |. ..+. .+-..++++.+++.+ ++.+..-.. .+.+
T Consensus 78 ~~~~~~f~~~a~~agg~~~i~l~i~-~d------~~~~------~~e~~~~~~~a~~~~~~g~~vi~~~~------~~~~ 138 (264)
T 1xm3_A 78 AEEAVRIARLAKASGLCDMIKVEVI-GC------SRSL------LPDPVETLKASEQLLEEGFIVLPYTS------DDVV 138 (264)
T ss_dssp HHHHHHHHHHHHHTTCCSSEEECCB-CC------TTTC------CBCHHHHHHHHHHHHHTTCCEEEEEC------SCHH
T ss_pred HHHHHHHHHHHHHcCCCCeEEEeec-CC------Cccc------ccchHHHHHHHHHHHCCCeEEEEEcC------CCHH
Confidence 787777777788874 567776541 11 0000 111335555555543 444432111 1222
Q ss_pred HHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCCh
Q 020423 213 QLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHH 292 (326)
Q Consensus 213 e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~ 292 (326)
+ ++.+++.|.|+|...+... |.. .. ...++.+..+++. .++||++.|||.+++++.++++.|||+
T Consensus 139 ~-----a~~~~~~gad~v~~~~~~~---Gt~----~~--~~~~~~l~~i~~~-~~iPviv~gGI~t~eda~~~~~~GAdg 203 (264)
T 1xm3_A 139 L-----ARKLEELGVHAIMPGASPI---GSG----QG--ILNPLNLSFIIEQ-AKVPVIVDAGIGSPKDAAYAMELGADG 203 (264)
T ss_dssp H-----HHHHHHHTCSCBEECSSST---TCC----CC--CSCHHHHHHHHHH-CSSCBEEESCCCSHHHHHHHHHTTCSE
T ss_pred H-----HHHHHHhCCCEEEECCccc---CCC----CC--CCCHHHHHHHHhc-CCCCEEEEeCCCCHHHHHHHHHcCCCE
Confidence 2 2233467999983323221 100 00 1125666666664 599999999999999999999999999
Q ss_pred hhhhHHHHhCCc
Q 020423 293 VMVGRAAYQNPW 304 (326)
Q Consensus 293 V~iGRall~dP~ 304 (326)
|.+|++++..++
T Consensus 204 ViVGSAi~~a~d 215 (264)
T 1xm3_A 204 VLLNTAVSGADD 215 (264)
T ss_dssp EEESHHHHTSSS
T ss_pred EEEcHHHhCCCC
Confidence 999999996544
|
| >2qjg_A Putative aldolase MJ0400; beta-alpha barrel, lyase; HET: F2P; 2.60A {Methanocaldococcus jannaschii} PDB: 2qjh_A 2qji_A | Back alignment and structure |
|---|
Probab=99.13 E-value=4.8e-10 Score=101.99 Aligned_cols=197 Identities=13% Similarity=0.108 Sum_probs=121.2
Q ss_pred ecCCcEEEccCCCCChHH-HHHHHHHcCCCcEEEecceeeccccccccchhhhhhcCCCCCcEEEEecCCC-----H--H
Q 020423 66 YLPPWFSVAPMMDWTDNH-YRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSN-----L--D 137 (326)
Q Consensus 66 ~l~nrivlAPM~~~s~~~-~r~~~~~~Gg~gli~te~~~~~~~~~~~~~~~~~~~~~~~~~piivQL~g~~-----~--~ 137 (326)
.+.+.+.++||.+..+.. +...+.+.| +..+.+.. ...... .+ ......|+++|+.+.. + +
T Consensus 31 ~id~~~~l~p~~~~~~~~~~~~~~~~~g-~~~i~~~~----~~~~~~---~~---~~~~~~~~~v~~~~~~~~~~d~~~~ 99 (273)
T 2qjg_A 31 PMDHGVSNGPIKGLIDIRKTVNDVAEGG-ANAVLLHK----GIVRHG---HR---GYGKDVGLIIHLSGGTAISPNPLKK 99 (273)
T ss_dssp ECCHHHHHCSCTTSSSHHHHHHHHHHHT-CSEEEECH----HHHHSC---CC---SSSCCCEEEEECEECCTTSSSTTCC
T ss_pred EcccccccCCCcchhhHHHHHHHHHhcC-CCEEEeCH----HHHHHH---HH---hhcCCCCEEEEEcCCCcCCCCcccc
Confidence 456677789998887764 333344555 55555432 111111 00 0113467888986543 1 2
Q ss_pred HHHHHHHHHHHCCCCEE--EecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEecc-CCC--CCccHH
Q 020423 138 NLAKATELANAYNYDEI--NLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRI-GVD--DHDSYN 212 (326)
Q Consensus 138 ~f~~aA~~a~~aG~d~I--ein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~-g~~--~~~~~~ 212 (326)
.+.+.++.+.++|+|.| .++.+++.. . ...+.+.++++..++ .+.|+.+.+-. |.. +..+.+
T Consensus 100 ~~~~~v~~a~~~Ga~~v~~~l~~~~~~~--------~----~~~~~~~~v~~~~~~-~g~~viv~~~~~G~~l~~~~~~~ 166 (273)
T 2qjg_A 100 VIVTTVEEAIRMGADAVSIHVNVGSDED--------W----EAYRDLGMIAETCEY-WGMPLIAMMYPRGKHIQNERDPE 166 (273)
T ss_dssp EECSCHHHHHHTTCSEEEEEEEETSTTH--------H----HHHHHHHHHHHHHHH-HTCCEEEEEEECSTTCSCTTCHH
T ss_pred hHHHHHHHHHHcCCCEEEEEEecCCCCH--------H----HHHHHHHHHHHHHHH-cCCCEEEEeCCCCcccCCCCCHh
Confidence 23566778888999999 666654421 0 112345555555543 48888887521 111 111222
Q ss_pred HHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCC--HHH----HHHHH
Q 020423 213 QLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT--VDE----VNAAL 286 (326)
Q Consensus 213 e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s--~~d----a~~~l 286 (326)
+. +.+++..++.|+|+|.++. +.+++.+.++.+.. ++||++.|||.+ .++ +.+++
T Consensus 167 ~~-~~~a~~a~~~Gad~i~~~~-----------------~~~~~~l~~i~~~~-~ipvva~GGi~~~~~~~~~~~~~~~~ 227 (273)
T 2qjg_A 167 LV-AHAARLGAELGADIVKTSY-----------------TGDIDSFRDVVKGC-PAPVVVAGGPKTNTDEEFLQMIKDAM 227 (273)
T ss_dssp HH-HHHHHHHHHTTCSEEEECC-----------------CSSHHHHHHHHHHC-SSCEEEECCSCCSSHHHHHHHHHHHH
T ss_pred HH-HHHHHHHHHcCCCEEEECC-----------------CCCHHHHHHHHHhC-CCCEEEEeCCCCCCHHHHHHHHHHHH
Confidence 22 2234556789999998872 12378888887765 899999999994 778 55555
Q ss_pred HhCCChhhhhHHHHhCCch
Q 020423 287 RKGAHHVMVGRAAYQNPWY 305 (326)
Q Consensus 287 ~~GaD~V~iGRall~dP~l 305 (326)
+.||++|++||+++..|+.
T Consensus 228 ~~Ga~gv~vg~~i~~~~~~ 246 (273)
T 2qjg_A 228 EAGAAGVAVGRNIFQHDDV 246 (273)
T ss_dssp HHTCSEEECCHHHHTSSSH
T ss_pred HcCCcEEEeeHHhhCCCCH
Confidence 7999999999999998874
|
| >1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1 | Back alignment and structure |
|---|
Probab=99.13 E-value=1.7e-10 Score=113.84 Aligned_cols=139 Identities=17% Similarity=0.160 Sum_probs=95.1
Q ss_pred HHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC-CCcEEEEeccCCCCCccHHHHH
Q 020423 137 DNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLC 215 (326)
Q Consensus 137 ~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~-~~pv~vK~r~g~~~~~~~~e~~ 215 (326)
+++.+.++++.++|+|.|++++.. | .++...+.++++++.+ ++|+.++-- .+.++
T Consensus 236 ~~~~~~a~~l~~aGvd~v~i~~~~-----------G-----~~~~~~e~i~~i~~~~p~~pvi~g~~------~t~e~-- 291 (494)
T 1vrd_A 236 PETMERVEKLVKAGVDVIVIDTAH-----------G-----HSRRVIETLEMIKADYPDLPVVAGNV------ATPEG-- 291 (494)
T ss_dssp TTHHHHHHHHHHTTCSEEEECCSC-----------C-----SSHHHHHHHHHHHHHCTTSCEEEEEE------CSHHH--
T ss_pred HhHHHHHHHHHHhCCCEEEEEecC-----------C-----chHHHHHHHHHHHHHCCCceEEeCCc------CCHHH--
Confidence 456778889999999999998631 2 2456778999999988 789988521 22333
Q ss_pred HHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHH---HhcCCCceEEEeCCCCCHHHHHHHHHhCCCh
Q 020423 216 DFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYAL---LRDFPDLTFTLNGGINTVDEVNAALRKGAHH 292 (326)
Q Consensus 216 ~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i---~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~ 292 (326)
++.++++|+|+|.+++...........+....+ .+..+..+ .+. .++|||++|||.+++|+.++++.|||+
T Consensus 292 ---a~~l~~~G~d~I~v~~~~G~~~~~~~~~~~g~p--~~~~l~~v~~~~~~-~~ipvia~GGI~~~~di~kala~GAd~ 365 (494)
T 1vrd_A 292 ---TEALIKAGADAVKVGVGPGSICTTRVVAGVGVP--QLTAVMECSEVARK-YDVPIIADGGIRYSGDIVKALAAGAES 365 (494)
T ss_dssp ---HHHHHHTTCSEEEECSSCSTTCHHHHHHCCCCC--HHHHHHHHHHHHHT-TTCCEEEESCCCSHHHHHHHHHTTCSE
T ss_pred ---HHHHHHcCCCEEEEcCCCCccccccccCCCCcc--HHHHHHHHHHHHhh-cCCCEEEECCcCCHHHHHHHHHcCCCE
Confidence 234567999999995432100000000000111 23333333 333 389999999999999999999999999
Q ss_pred hhhhHHHHhCCch
Q 020423 293 VMVGRAAYQNPWY 305 (326)
Q Consensus 293 V~iGRall~dP~l 305 (326)
|++||+++.+|+.
T Consensus 366 V~iGr~~l~~~e~ 378 (494)
T 1vrd_A 366 VMVGSIFAGTEEA 378 (494)
T ss_dssp EEESHHHHTBTTS
T ss_pred EEECHHHhcCCcC
Confidence 9999999998884
|
| >1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5 | Back alignment and structure |
|---|
Probab=99.12 E-value=6.2e-10 Score=98.14 Aligned_cols=114 Identities=15% Similarity=0.149 Sum_probs=75.9
Q ss_pred HHHHHHHHHHhcC-CCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHH
Q 020423 181 FVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYY 259 (326)
Q Consensus 181 ~l~eiv~avr~~~-~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~ 259 (326)
.+.++++.+++.. +.++.+++ .+.++. +.+++.|+|+|.+..... .+... . .......++.++
T Consensus 105 ~~~~~i~~~~~~~~~~~v~~~~-------~t~~e~-----~~~~~~G~d~i~~~~~g~--t~~~~-~-~~~~~~~~~~~~ 168 (223)
T 1y0e_A 105 TLDELVSYIRTHAPNVEIMADI-------ATVEEA-----KNAARLGFDYIGTTLHGY--TSYTQ-G-QLLYQNDFQFLK 168 (223)
T ss_dssp CHHHHHHHHHHHCTTSEEEEEC-------SSHHHH-----HHHHHTTCSEEECTTTTS--STTST-T-CCTTHHHHHHHH
T ss_pred CHHHHHHHHHHhCCCceEEecC-------CCHHHH-----HHHHHcCCCEEEeCCCcC--cCCCC-C-CCCCcccHHHHH
Confidence 3467788887765 56665532 123332 224578999997643211 01000 0 000223467788
Q ss_pred HHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhCCchhHHhHHH
Q 020423 260 ALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDT 312 (326)
Q Consensus 260 ~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~dP~l~~~~i~~ 312 (326)
++++.. ++||++.|||.+++++.++++.|||+|++||+++. |+...+.+.+
T Consensus 169 ~~~~~~-~ipvia~GGI~~~~~~~~~~~~Gad~v~vG~al~~-p~~~~~~~~~ 219 (223)
T 1y0e_A 169 DVLQSV-DAKVIAEGNVITPDMYKRVMDLGVHCSVVGGAITR-PKEITKRFVQ 219 (223)
T ss_dssp HHHHHC-CSEEEEESSCCSHHHHHHHHHTTCSEEEECHHHHC-HHHHHHHHHH
T ss_pred HHHhhC-CCCEEEecCCCCHHHHHHHHHcCCCEEEEChHHcC-cHHHHHHHHH
Confidence 887765 89999999999999999999999999999999665 8866666554
|
| >3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=3.3e-10 Score=112.12 Aligned_cols=136 Identities=14% Similarity=0.077 Sum_probs=89.3
Q ss_pred HHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC-CCcEEEEeccCCCCCccHHHHHHH
Q 020423 139 LAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDF 217 (326)
Q Consensus 139 f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~-~~pv~vK~r~g~~~~~~~~e~~~~ 217 (326)
..+.++.+.++|+|.|+++..++. .+.+.++++++++.. +.|+.++-- .+.++
T Consensus 257 ~~era~aLveaGvd~I~Id~a~g~----------------~~~v~~~i~~i~~~~~~~~vi~g~v------~t~e~---- 310 (511)
T 3usb_A 257 AMTRIDALVKASVDAIVLDTAHGH----------------SQGVIDKVKEVRAKYPSLNIIAGNV------ATAEA---- 310 (511)
T ss_dssp HHHHHHHHHHTTCSEEEEECSCTT----------------SHHHHHHHHHHHHHCTTSEEEEEEE------CSHHH----
T ss_pred hHHHHHHHHhhccceEEecccccc----------------hhhhhhHHHHHHHhCCCceEEeeee------ccHHH----
Confidence 455567778899999999865432 345778899998887 478887521 23332
Q ss_pred HHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHH---HhcCCCceEEEeCCCCCHHHHHHHHHhCCChhh
Q 020423 218 IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYAL---LRDFPDLTFTLNGGINTVDEVNAALRKGAHHVM 294 (326)
Q Consensus 218 ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i---~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~ 294 (326)
++.+.++|+|+|.+..+...... ...........+..+.++ .++. ++|||+.|||.+++|+.++++.|||+|+
T Consensus 311 -a~~~~~aGad~i~vg~g~gsi~~--~~~~~g~g~p~~~~l~~v~~~~~~~-~iPVIa~GGI~~~~di~kala~GA~~V~ 386 (511)
T 3usb_A 311 -TKALIEAGANVVKVGIGPGSICT--TRVVAGVGVPQLTAVYDCATEARKH-GIPVIADGGIKYSGDMVKALAAGAHVVM 386 (511)
T ss_dssp -HHHHHHHTCSEEEECSSCSTTCC--HHHHHCCCCCHHHHHHHHHHHHHTT-TCCEEEESCCCSHHHHHHHHHTTCSEEE
T ss_pred -HHHHHHhCCCEEEECCCCccccc--cccccCCCCCcHHHHHHHHHHHHhC-CCcEEEeCCCCCHHHHHHHHHhCchhhe
Confidence 33456789999998322110000 000000111234544443 4443 7999999999999999999999999999
Q ss_pred hhHHHHhCCc
Q 020423 295 VGRAAYQNPW 304 (326)
Q Consensus 295 iGRall~dP~ 304 (326)
+||+++....
T Consensus 387 vGs~~~~~~e 396 (511)
T 3usb_A 387 LGSMFAGVAE 396 (511)
T ss_dssp ESTTTTTBTT
T ss_pred ecHHHhcCcc
Confidence 9999876543
|
| >2uv8_G Fatty acid synthase subunit beta (FAS1); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_G* 3hmj_G* | Back alignment and structure |
|---|
Probab=99.07 E-value=4.3e-10 Score=125.29 Aligned_cols=214 Identities=11% Similarity=0.057 Sum_probs=134.8
Q ss_pred CCcEEEccCC-CCChHHHHHHHHHcCCCcEEEec-ceeeccccccccchhhhhhcCCCCCcEEEEecCCCHH---HHHHH
Q 020423 68 PPWFSVAPMM-DWTDNHYRTLARLISKHAWLYTE-MLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSNLD---NLAKA 142 (326)
Q Consensus 68 ~nrivlAPM~-~~s~~~~r~~~~~~Gg~gli~te-~~~~~~~~~~~~~~~~~~~~~~~~~piivQL~g~~~~---~f~~a 142 (326)
+.+|+++||+ ..+++.+...+.++||.|.+... +..++.+... +++..+..+.++|+.+|++-.++. ...+.
T Consensus 589 ~~PIi~~gM~~~~~~~~lvaAvsnAGglg~l~~~~~~~~e~l~~~---I~~~~~~t~~~~~~gvN~~~~~~~~~~~~~~~ 665 (2051)
T 2uv8_G 589 RPPLLVPGMTPCTVSPDFVAATTNAGYTIELAGGGYFSAAGMTAA---IDSVVSQIEKGSTFGINLIYVNPFMLQWGIPL 665 (2051)
T ss_dssp SCSEEECCCHHHHTCHHHHHHHHHTTCEEEEEGGGCCSHHHHHHH---HHHHHHHSCTTCCEEEEEETTCTTHHHHHHHH
T ss_pred ccceecCCCccccccHHHHHHHHcCCcEEEEccCCCCCHHHHHHH---HHHHHHhcCCCCceEEEEeecChhhhhhhHHH
Confidence 4699999998 45599999999999999987553 3333333222 222223344578999998765442 12267
Q ss_pred HHHHHHCCCCE--EEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHHH
Q 020423 143 TELANAYNYDE--INLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYK 220 (326)
Q Consensus 143 A~~a~~aG~d~--Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia~ 220 (326)
.+.+.+.|... |.+..|.|. .+...++++.+ |+++.... .+ .... ++. +.
T Consensus 666 ~~~~~~~gv~i~~v~~~ag~p~----------------~~~~~~~i~~l----G~~vi~~~-~~-----~~~a-~~~-~~ 717 (2051)
T 2uv8_G 666 IKELRSKGYPIQFLTIGAGVPS----------------LEVASEYIETL----GLKYLGLK-PG-----SIDA-ISQ-VI 717 (2051)
T ss_dssp HHHHHHTTCSEEEEEEESSCCC----------------HHHHHHHHHHS----CCSCEEEC-CC-----SHHH-HHH-HH
T ss_pred HHHHHHcCCCcceEEecCCCCc----------------hhhHHHHHHHc----CCEEEEec-Cc-----hHHH-HHH-HH
Confidence 77888889665 888776553 22334444443 77765421 11 1222 121 23
Q ss_pred HhhhCCccEE---EEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHH-----------
Q 020423 221 VSSLSPTRHF---IIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAAL----------- 286 (326)
Q Consensus 221 ~le~~Gvd~I---~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l----------- 286 (326)
..+++|+|.+ .+.|.++ +|+.+. ..+....+.++.++++. ++||||++|||.+++++..+|
T Consensus 718 ~~~~~g~d~~ii~~~~G~ea--GGH~g~--~d~~~~~l~l~~~v~~~-~~ipviaaGGi~dg~~~~aaL~g~w~~~~g~~ 792 (2051)
T 2uv8_G 718 NIAKAHPNFPIALQWTGGRG--GGHHSF--EDAHTPMLQMYSKIRRH-PNIMLIFGSGFGSADDTYPYLTGEWSTKFDYP 792 (2051)
T ss_dssp HHHHHSTTSCEEEEECCSSC--SEECCS--CCSSHHHHHHHHHHTTC-TTBCCEEESSCCSHHHHTHHHHTCGGGTTTCC
T ss_pred HHHHhCCCceeEEEEEccCc--CCCCCc--ccccccHHHHHHHHHhc-CCceEEEeCCCCCHHHHHHHHccccccccCcc
Confidence 3457899993 5566654 343221 11222234456666654 599999999999999999999
Q ss_pred HhCCChhhhhHHHHhCCch-hHHhHHHhhhCC
Q 020423 287 RKGAHHVMVGRAAYQNPWY-TLGHVDTAIYGA 317 (326)
Q Consensus 287 ~~GaD~V~iGRall~dP~l-~~~~i~~~~~~~ 317 (326)
..|||+|+||+.++...+- ....+++.+...
T Consensus 793 ~lgadGv~~GTrf~~t~Ea~~~~~~K~~iv~a 824 (2051)
T 2uv8_G 793 PMPFDGFLFGSRVMIAKEVKTSPDAKKCIAAC 824 (2051)
T ss_dssp CCCCSCEECSGGGTTSTTSCCCHHHHHHHHTC
T ss_pred CCCCceeeechHHHhCcccccCHHHHHHHHhC
Confidence 6899999999999976542 234445544443
|
| >1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A | Back alignment and structure |
|---|
Probab=99.05 E-value=2.6e-09 Score=95.90 Aligned_cols=152 Identities=11% Similarity=0.085 Sum_probs=101.6
Q ss_pred CCCcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHh-cCCCcEE---
Q 020423 123 EQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAA-NTNVPVS--- 198 (326)
Q Consensus 123 ~~~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~-~~~~pv~--- 198 (326)
.+.|+++.-+-.++++ ++.+.++|+|+|-++ ..++.+++.+.++++.... .....+.
T Consensus 73 ~~ipvi~~ggI~~~~~----~~~~~~~Gad~V~lg---------------~~~l~~p~~~~~~~~~~g~~~i~~~~~~~~ 133 (253)
T 1thf_D 73 IDIPFTVGGGIHDFET----ASELILRGADKVSIN---------------TAAVENPSLITQIAQTFGSQAVVVAIDAKR 133 (253)
T ss_dssp CCSCEEEESSCCSHHH----HHHHHHTTCSEEEES---------------HHHHHCTHHHHHHHHHHCGGGEEEEEEEEE
T ss_pred CCCCEEEeCCCCCHHH----HHHHHHcCCCEEEEC---------------hHHHhChHHHHHHHHHcCCCcEEEEEEEEc
Confidence 4678888766566654 444556899999774 2333567778888777632 1112233
Q ss_pred ------EEeccCCCCCc--cHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceE
Q 020423 199 ------VKCRIGVDDHD--SYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTF 270 (326)
Q Consensus 199 ------vK~r~g~~~~~--~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPV 270 (326)
|++ .+|.+.. +..+. ++.+++.|++.|.+|+.+.. |. . ...+++.+.++.+.. ++||
T Consensus 134 ~~g~~~v~~-~g~~~~~~~~~~e~----~~~~~~~G~~~i~~~~~~~~--g~------~-~g~~~~~~~~l~~~~-~ipv 198 (253)
T 1thf_D 134 VDGEFMVFT-YSGKKNTGILLRDW----VVEVEKRGAGEILLTSIDRD--GT------K-SGYDTEMIRFVRPLT-TLPI 198 (253)
T ss_dssp ETTEEEEEE-TTTTEEEEEEHHHH----HHHHHHTTCSEEEEEETTTT--TS------C-SCCCHHHHHHHGGGC-CSCE
T ss_pred cCCcEEEEE-CCCccccCCCHHHH----HHHHHHCCCCEEEEEeccCC--CC------C-CCCCHHHHHHHHHhc-CCCE
Confidence 333 2444321 23332 23345689999999865531 11 0 112488888887664 9999
Q ss_pred EEeCCCCCHHHHHHHHHhCCChhhhhHHHHhCCchhHH
Q 020423 271 TLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLG 308 (326)
Q Consensus 271 Ia~GgI~s~~da~~~l~~GaD~V~iGRall~dP~l~~~ 308 (326)
|++|||.+++++.++++.|||+|++||+++.+|+.+.+
T Consensus 199 ia~GGI~~~~d~~~~~~~Gadgv~vGsal~~~~~~~~~ 236 (253)
T 1thf_D 199 IASGGAGKMEHFLEAFLAGADAALAASVFHFREIDVRE 236 (253)
T ss_dssp EEESCCCSHHHHHHHHHTTCSEEEESHHHHTTCSCHHH
T ss_pred EEECCCCCHHHHHHHHHcCChHHHHHHHHHcCCCCHHH
Confidence 99999999999999999999999999999999964333
|
| >2agk_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; TIM alpha/beta barrel; HET: CIT; 1.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.05 E-value=1.3e-10 Score=105.40 Aligned_cols=154 Identities=17% Similarity=0.174 Sum_probs=101.6
Q ss_pred cEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCC-----HHHHHHHHHHHH-hcCCCcEEE
Q 020423 126 PIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLD-----PKFVGEAMSVIA-ANTNVPVSV 199 (326)
Q Consensus 126 piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r-----~~~l~eiv~avr-~~~~~pv~v 199 (326)
++-+|+.|.... . ++.+.+ +|+|-|-++ +.++++ |+++.++++++. +.+-.++.+
T Consensus 76 ~~pv~vgGGir~-~-~~~~~l--~Ga~~Viig---------------s~a~~~~g~~~p~~~~~~~~~~g~~~ivv~iD~ 136 (260)
T 2agk_A 76 PQFLQVGGGIND-T-NCLEWL--KWASKVIVT---------------SWLFTKEGHFQLKRLERLTELCGKDRIVVDLSC 136 (260)
T ss_dssp TTTSEEESSCCT-T-THHHHT--TTCSCEEEC---------------GGGBCTTCCBCHHHHHHHHHHHCGGGEEEEEEE
T ss_pred CceEEEeCCCCH-H-HHHHHh--cCCCEEEEC---------------cHHHhhcCCCCHHHHHHHHHHhCcCcEEEEEEe
Confidence 344677665443 3 555555 899987764 333344 999999999997 443344544
Q ss_pred Eec---------cCCCCCc--cHH-HHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCC-
Q 020423 200 KCR---------IGVDDHD--SYN-QLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFP- 266 (326)
Q Consensus 200 K~r---------~g~~~~~--~~~-e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~- 266 (326)
|.+ .||.+.. +.. ++ ++.+++. ++.|.+|+++.. |. . ...+|+.++++.+..+
T Consensus 137 k~~~~~g~~V~~~gw~~~t~~~~~~e~----a~~~~~~-a~~il~t~i~~d--G~------~-~G~d~eli~~l~~~~~~ 202 (260)
T 2agk_A 137 RKTQDGRWIVAMNKWQTLTDLELNADT----FRELRKY-TNEFLIHAADVE--GL------C-GGIDELLVSKLFEWTKD 202 (260)
T ss_dssp EEEETTEEEEEETTTTEEEEEEESHHH----HHHHTTT-CSEEEEEC----------------CCCCHHHHHHHHHHHTT
T ss_pred eecCCCceEEEEcCCccccCccHHHHH----HHHHHHh-cCEEEEEeeccc--cC------c-CCCCHHHHHHHHHhhcc
Confidence 422 2454421 122 33 4456778 999999987641 11 0 1125899988887643
Q ss_pred --CceEEEeCCCCCHHHHHHHHHh--CCChhhhhHHH--HhCC-chhHHhHHHh
Q 020423 267 --DLTFTLNGGINTVDEVNAALRK--GAHHVMVGRAA--YQNP-WYTLGHVDTA 313 (326)
Q Consensus 267 --~iPVIa~GgI~s~~da~~~l~~--GaD~V~iGRal--l~dP-~l~~~~i~~~ 313 (326)
++|||++|||.+++|+.++++. |+|+|++||++ +.+| +. ...+.+.
T Consensus 203 ~~~iPVIasGGi~s~ed~~~l~~~~~G~~gvivg~al~l~~g~~~~-~~~~~~~ 255 (260)
T 2agk_A 203 YDDLKIVYAGGAKSVDDLKLVDELSHGKVDLTFGSSLDIFGGNLVK-FEDCCRW 255 (260)
T ss_dssp CSSCEEEEESCCCCTHHHHHHHHHHTTCEEEECCTTBGGGTCSSBC-HHHHHHH
T ss_pred cCCceEEEeCCCCCHHHHHHHHHhcCCCCEEEeeCCHHHcCCCCCC-HHHHHHH
Confidence 8999999999999999999985 99999999997 8888 75 4444443
|
| >1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural genomics, epimerase, PSI, structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5 | Back alignment and structure |
|---|
Probab=99.04 E-value=1.5e-09 Score=96.51 Aligned_cols=138 Identities=14% Similarity=0.144 Sum_probs=94.4
Q ss_pred HHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC-CCcEEEEeccCCCCCccHHHHHHHH
Q 020423 140 AKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFI 218 (326)
Q Consensus 140 ~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~-~~pv~vK~r~g~~~~~~~~e~~~~i 218 (326)
.+.++.+.++|+|.|.+|...-. +.+ | ..+.++++.+++.. +.++.+.++ +.++
T Consensus 91 ~~~i~~~~~~Gad~V~l~~~~~~----~~~--~-------~~~~~~i~~i~~~~~~~~v~~~~~-------t~~e----- 145 (234)
T 1yxy_A 91 MTEVDQLAALNIAVIAMDCTKRD----RHD--G-------LDIASFIRQVKEKYPNQLLMADIS-------TFDE----- 145 (234)
T ss_dssp HHHHHHHHTTTCSEEEEECCSSC----CTT--C-------CCHHHHHHHHHHHCTTCEEEEECS-------SHHH-----
T ss_pred HHHHHHHHHcCCCEEEEcccccC----CCC--C-------ccHHHHHHHHHHhCCCCeEEEeCC-------CHHH-----
Confidence 34566788999999999864311 000 1 13467888888766 666666432 2333
Q ss_pred HHHhhhCCccEE--EEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhh
Q 020423 219 YKVSSLSPTRHF--IIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVG 296 (326)
Q Consensus 219 a~~le~~Gvd~I--~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iG 296 (326)
++.+.+.|+|+| ++++.+....+ ..+.+++.++++++. ++||++.|||+|++++.++++.|||+|++|
T Consensus 146 a~~a~~~Gad~i~~~v~g~~~~~~~--------~~~~~~~~i~~~~~~--~ipvia~GGI~s~~~~~~~~~~Gad~v~vG 215 (234)
T 1yxy_A 146 GLVAHQAGIDFVGTTLSGYTPYSRQ--------EAGPDVALIEALCKA--GIAVIAEGKIHSPEEAKKINDLGVAGIVVG 215 (234)
T ss_dssp HHHHHHTTCSEEECTTTTSSTTSCC--------SSSCCHHHHHHHHHT--TCCEEEESCCCSHHHHHHHHTTCCSEEEEC
T ss_pred HHHHHHcCCCEEeeeccccCCCCcC--------CCCCCHHHHHHHHhC--CCCEEEECCCCCHHHHHHHHHCCCCEEEEc
Confidence 223456899999 67765421111 122357778887765 899999999999999999999999999999
Q ss_pred HHHHhCCchhHHhHHHh
Q 020423 297 RAAYQNPWYTLGHVDTA 313 (326)
Q Consensus 297 Rall~dP~l~~~~i~~~ 313 (326)
|+++. |....+.+.+.
T Consensus 216 sal~~-p~~~~~~l~~~ 231 (234)
T 1yxy_A 216 GAITR-PKEIAERFIEA 231 (234)
T ss_dssp HHHHC-HHHHHHHHHHH
T ss_pred hHHhC-hHHHHHHHHHH
Confidence 99887 77655655543
|
| >2pgw_A Muconate cycloisomerase; enolase superfamily, octamer, small metabolism, PSI-II, NYSGXRC, structural genomics, PR structure initiative; 1.95A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.03 E-value=7e-09 Score=99.02 Aligned_cols=142 Identities=11% Similarity=0.099 Sum_probs=111.3
Q ss_pred EecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC-CCcEEEEeccCCCCC
Q 020423 130 QIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCRIGVDDH 208 (326)
Q Consensus 130 QL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~-~~pv~vK~r~g~~~~ 208 (326)
.+.+.++++|.++|+++.++||+.|++|+|+ ++++..+++++||+++ ++++.++...+|
T Consensus 142 ~~~~~~~e~~~~~a~~~~~~Gf~~iKik~g~-----------------~~~~~~e~v~avr~a~gd~~l~vD~n~~~--- 201 (384)
T 2pgw_A 142 FLQGETAEELARDAAVGHAQGERVFYLKVGR-----------------GEKLDLEITAAVRGEIGDARLRLDANEGW--- 201 (384)
T ss_dssp ECCCSSHHHHHHHHHHHHHTTCCEEEEECCS-----------------CHHHHHHHHHHHHTTSTTCEEEEECTTCC---
T ss_pred ECCCCCHHHHHHHHHHHHHcCCCEEEECcCC-----------------CHHHHHHHHHHHHHHcCCcEEEEecCCCC---
Confidence 3445689999999999999999999998753 5888899999999998 466777665554
Q ss_pred ccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHh
Q 020423 209 DSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRK 288 (326)
Q Consensus 209 ~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~ 288 (326)
+.++..+ +++.+++.|+++|. .+ .++.+++.++++++.. ++||++.+.+.+++++.++++.
T Consensus 202 -~~~~a~~-~~~~l~~~~i~~iE----qP------------~~~~~~~~~~~l~~~~-~iPI~~de~i~~~~~~~~~i~~ 262 (384)
T 2pgw_A 202 -SVHDAIN-MCRKLEKYDIEFIE----QP------------TVSWSIPAMAHVREKV-GIPIVADQAAFTLYDVYEICRQ 262 (384)
T ss_dssp -CHHHHHH-HHHHHGGGCCSEEE----CC------------SCTTCHHHHHHHHHHC-SSCEEESTTCCSHHHHHHHHHT
T ss_pred -CHHHHHH-HHHHHHhcCCCEEe----CC------------CChhhHHHHHHHHhhC-CCCEEEeCCcCCHHHHHHHHHc
Confidence 3455555 45577889999985 11 1234578888887765 8999999999999999999996
Q ss_pred C-CChhhhhHHHHhCCchhHHhH
Q 020423 289 G-AHHVMVGRAAYQNPWYTLGHV 310 (326)
Q Consensus 289 G-aD~V~iGRall~dP~l~~~~i 310 (326)
| +|+|++-...+..++-+.+.+
T Consensus 263 ~~~d~v~ik~~~~GGit~~~~i~ 285 (384)
T 2pgw_A 263 RAADMICIGPREIGGIQPMMKAA 285 (384)
T ss_dssp TCCSEEEECHHHHTSHHHHHHHH
T ss_pred CCCCEEEEcchhhCCHHHHHHHH
Confidence 5 999999999888877544433
|
| >3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=99.01 E-value=4e-09 Score=93.76 Aligned_cols=133 Identities=14% Similarity=0.058 Sum_probs=93.6
Q ss_pred HHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHHHH
Q 020423 142 ATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKV 221 (326)
Q Consensus 142 aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia~~ 221 (326)
.++.+.++|+|.|-+....- .+|+.+.++++.+++. +.++.+.+. +.++. +.
T Consensus 93 ~i~~~~~aGad~I~l~~~~~---------------~~p~~l~~~i~~~~~~-g~~v~~~v~-------t~eea-----~~ 144 (229)
T 3q58_A 93 DVDALAQAGADIIAFDASFR---------------SRPVDIDSLLTRIRLH-GLLAMADCS-------TVNEG-----IS 144 (229)
T ss_dssp HHHHHHHHTCSEEEEECCSS---------------CCSSCHHHHHHHHHHT-TCEEEEECS-------SHHHH-----HH
T ss_pred HHHHHHHcCCCEEEECcccc---------------CChHHHHHHHHHHHHC-CCEEEEecC-------CHHHH-----HH
Confidence 35567889999998875321 2345677788888664 777776532 33332 23
Q ss_pred hhhCCccEEEE--ecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHH
Q 020423 222 SSLSPTRHFII--HSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAA 299 (326)
Q Consensus 222 le~~Gvd~I~v--~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRal 299 (326)
.++.|+|+|.+ ++.+.. . .....+++.+.++.+. ++|||+.|||.|++++.++++.|||+|++|+++
T Consensus 145 a~~~Gad~Ig~~~~g~t~~--~-------~~~~~~~~li~~l~~~--~ipvIA~GGI~t~~d~~~~~~~GadgV~VGsai 213 (229)
T 3q58_A 145 CHQKGIEFIGTTLSGYTGP--I-------TPVEPDLAMVTQLSHA--GCRVIAEGRYNTPALAANAIEHGAWAVTVGSAI 213 (229)
T ss_dssp HHHTTCSEEECTTTTSSSS--C-------CCSSCCHHHHHHHHTT--TCCEEEESSCCSHHHHHHHHHTTCSEEEECHHH
T ss_pred HHhCCCCEEEecCccCCCC--C-------cCCCCCHHHHHHHHHc--CCCEEEECCCCCHHHHHHHHHcCCCEEEEchHh
Confidence 45799999964 333221 0 0122358888888764 899999999999999999999999999999887
Q ss_pred HhCCchhHHhHHHhh
Q 020423 300 YQNPWYTLGHVDTAI 314 (326)
Q Consensus 300 l~dP~l~~~~i~~~~ 314 (326)
+ +|+.+.+++.+.+
T Consensus 214 ~-~p~~~~~~f~~~~ 227 (229)
T 3q58_A 214 T-RIEHICQWFSHAV 227 (229)
T ss_dssp H-CHHHHHHHHHHHH
T ss_pred c-ChHHHHHHHHHHH
Confidence 7 6887777776654
|
| >1ea0_A Glutamate synthase [NADPH] large chain; oxidoreductase, iron sulphur flavoprotein; HET: OMT FMN AKG; 3.0A {Azospirillum brasilense} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 2vdc_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=1.5e-09 Score=116.62 Aligned_cols=112 Identities=14% Similarity=0.097 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHHhcC-CCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCC---cCCCCCcc
Q 020423 179 PKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAE---NRTIPPLK 254 (326)
Q Consensus 179 ~~~l~eiv~avr~~~-~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~---~~~~~~~~ 254 (326)
++-+.++++.+|+.. +.||.||+-... ...+ .++.++++|+|.|+|+|.....++ ++.. ....+ .
T Consensus 977 ~edl~~~I~~Lk~~~~~~PV~VKlv~~~----gi~~----~A~~a~~AGAD~IvVsG~eGGTga-sp~~~~~~~G~P--t 1045 (1479)
T 1ea0_A 977 IEDLAQLIYDLKQINPDAKVTVKLVSRS----GIGT----IAAGVAKANADIILISGNSGGTGA-SPQTSIKFAGLP--W 1045 (1479)
T ss_dssp HHHHHHHHHHHHHHCTTCEEEEEEECCT----THHH----HHHHHHHTTCSEEEEECTTCCCSS-EETTHHHHSCCC--H
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEEcCCC----ChHH----HHHHHHHcCCcEEEEcCCCCCCCC-CchhhhcCCchh--H
Confidence 566789999999988 889999987642 1112 244556799999999876532111 1100 00111 1
Q ss_pred HHHHHHHHhc---C---CCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHh
Q 020423 255 YEYYYALLRD---F---PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 301 (326)
Q Consensus 255 ~~~i~~i~~~---~---~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~ 301 (326)
...+.++.+. . .++|||+.|||.++.|+.+++..|||+|++||++|.
T Consensus 1046 ~~aL~ev~~al~~~glr~~VpVIAdGGIrtG~DVakALaLGAdaV~iGTafL~ 1098 (1479)
T 1ea0_A 1046 EMGLSEVHQVLTLNRLRHRVRLRTDGGLKTGRDIVIAAMLGAEEFGIGTASLI 1098 (1479)
T ss_dssp HHHHHHHHHHHHTTTCTTTSEEEEESSCCSHHHHHHHHHTTCSEEECCHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCCceEEEECCCCCHHHHHHHHHcCCCeeeEcHHHHH
Confidence 2344444332 1 279999999999999999999999999999999976
|
| >3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0 | Back alignment and structure |
|---|
Probab=98.99 E-value=5.7e-09 Score=92.96 Aligned_cols=133 Identities=15% Similarity=0.066 Sum_probs=93.1
Q ss_pred HHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHHHH
Q 020423 142 ATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKV 221 (326)
Q Consensus 142 aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia~~ 221 (326)
.++.+.++|+|.|-+....- .+|+.+.++++.+++. +.++.+.+. +.++. +.
T Consensus 93 ~i~~~~~~Gad~V~l~~~~~---------------~~p~~l~~~i~~~~~~-g~~v~~~v~-------t~eea-----~~ 144 (232)
T 3igs_A 93 DVDALAQAGAAIIAVDGTAR---------------QRPVAVEALLARIHHH-HLLTMADCS-------SVDDG-----LA 144 (232)
T ss_dssp HHHHHHHHTCSEEEEECCSS---------------CCSSCHHHHHHHHHHT-TCEEEEECC-------SHHHH-----HH
T ss_pred HHHHHHHcCCCEEEECcccc---------------CCHHHHHHHHHHHHHC-CCEEEEeCC-------CHHHH-----HH
Confidence 35567889999998865321 2345677788888664 677776432 33332 23
Q ss_pred hhhCCccEEEEe--cCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHH
Q 020423 222 SSLSPTRHFIIH--SRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAA 299 (326)
Q Consensus 222 le~~Gvd~I~v~--~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRal 299 (326)
+++.|+|+|.+. +.+.. +. ....+++.+.++.+. ++|||+.|||.|++++.++++.|||+|++|+++
T Consensus 145 a~~~Gad~Ig~~~~g~t~~--~~-------~~~~~~~~i~~l~~~--~ipvIA~GGI~t~~d~~~~~~~GadgV~VGsal 213 (232)
T 3igs_A 145 CQRLGADIIGTTMSGYTTP--DT-------PEEPDLPLVKALHDA--GCRVIAEGRYNSPALAAEAIRYGAWAVTVGSAI 213 (232)
T ss_dssp HHHTTCSEEECTTTTSSSS--SC-------CSSCCHHHHHHHHHT--TCCEEEESCCCSHHHHHHHHHTTCSEEEECHHH
T ss_pred HHhCCCCEEEEcCccCCCC--CC-------CCCCCHHHHHHHHhc--CCcEEEECCCCCHHHHHHHHHcCCCEEEEehHh
Confidence 457999999653 32221 00 122358888887764 899999999999999999999999999999888
Q ss_pred HhCCchhHHhHHHhh
Q 020423 300 YQNPWYTLGHVDTAI 314 (326)
Q Consensus 300 l~dP~l~~~~i~~~~ 314 (326)
+ +|+...+++.+.+
T Consensus 214 ~-~p~~~~~~~~~~i 227 (232)
T 3igs_A 214 T-RLEHICGWYNDAL 227 (232)
T ss_dssp H-CHHHHHHHHHHHH
T ss_pred c-CHHHHHHHHHHHH
Confidence 7 6887766665544
|
| >1ofd_A Ferredoxin-dependent glutamate synthase 2; oxidoreductase, complex enzyme, substrate channeling, amidotransferase, flavoprotein, iron-sulphur; HET: FMN AKG; 2.00A {Synechocystis SP} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 1llz_A* 1lm1_A* 1llw_A* 1ofe_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=4e-09 Score=113.71 Aligned_cols=114 Identities=17% Similarity=0.064 Sum_probs=78.1
Q ss_pred CHHHHHHHHHHHHhcC-CCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcC---CcCCCCCc
Q 020423 178 DPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPA---ENRTIPPL 253 (326)
Q Consensus 178 r~~~l~eiv~avr~~~-~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~---~~~~~~~~ 253 (326)
.++-+.++++.+|+.. +.||.||+-... ...+ .++.++++|+|.|+|+|.....++ ++. .....+.
T Consensus 1011 s~edl~~~I~~Lk~~~~~~PV~VKlv~~~----gi~~----~A~~a~kAGAD~IvVsG~eGGTga-sp~~~~~~~GlPt- 1080 (1520)
T 1ofd_A 1011 SIEDLAQLIYDLHQINPEAQVSVKLVAEI----GIGT----IAAGVAKANADIIQISGHDGGTGA-SPLSSIKHAGSPW- 1080 (1520)
T ss_dssp SHHHHHHHHHHHHHHCTTSEEEEEEECST----THHH----HHHHHHHTTCSEEEEECTTCCCSS-EEHHHHHHBCCCH-
T ss_pred CHHHHHHHHHHHHHhCCCCCEEEEecCCC----ChHH----HHHHHHHcCCCEEEEeCCCCccCC-CcchhhcCCchhH-
Confidence 3566788999999988 899999987642 1111 234556799999999876532111 100 0001111
Q ss_pred cHHHHHHHHhc---C---CCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhC
Q 020423 254 KYEYYYALLRD---F---PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN 302 (326)
Q Consensus 254 ~~~~i~~i~~~---~---~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~d 302 (326)
...+.++.+. . .++|||+.|||.++.|+.+++..|||+|++||++|..
T Consensus 1081 -~~aL~ev~~al~~~glr~~IpVIAdGGIrtG~DVakALaLGAdaV~iGTafL~a 1134 (1520)
T 1ofd_A 1081 -ELGVTEVHRVLMENQLRDRVLLRADGGLKTGWDVVMAALMGAEEYGFGSIAMIA 1134 (1520)
T ss_dssp -HHHHHHHHHHHHHTTCGGGCEEEEESSCCSHHHHHHHHHTTCSEEECSHHHHHH
T ss_pred -HHHHHHHHHHHHhcCCCCCceEEEECCCCCHHHHHHHHHcCCCeeEEcHHHHHH
Confidence 2334443321 1 2699999999999999999999999999999999763
|
| >3tdn_A FLR symmetric alpha-beta TIM barrel; symmetric superfold, de novo protein; 1.40A {Synthetic construct} PDB: 3og3_A 3tdm_A | Back alignment and structure |
|---|
Probab=98.97 E-value=2.5e-09 Score=95.87 Aligned_cols=100 Identities=15% Similarity=0.066 Sum_probs=73.6
Q ss_pred EEEEeccCCCCC-ccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCC
Q 020423 197 VSVKCRIGVDDH-DSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGG 275 (326)
Q Consensus 197 v~vK~r~g~~~~-~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~Gg 275 (326)
..||.+.+++.. .+..+ +++.+++.|+|+|+++..+....+ ...+++.++++++.. ++||+++||
T Consensus 22 ~~v~~~~~~~~~~~~~~~----~a~~~~~~G~~~i~v~d~~~~~~~---------~~~~~~~i~~i~~~~-~ipvi~~Gg 87 (247)
T 3tdn_A 22 FMVFTYSGKKNTGILLRD----WVVEVEKRGAGEILLTSIDRDGTK---------SGYDTEMIRFVRPLT-TLPIIASGG 87 (247)
T ss_dssp EEEEETTTTEEEEEEHHH----HHHHHHHTTCSEEEEEETTTTTCS---------SCCCHHHHHHHGGGC-CSCEEEESC
T ss_pred EEEEEcCCeecCCCCHHH----HHHHHHHcCCCEEEEEecCcccCC---------CcccHHHHHHHHHhC-CCCEEEeCC
Confidence 467777543321 13333 355667899999999876532111 123478888887765 999999999
Q ss_pred CCCHHHHHHHHHhCCChhhhhHHHHhCCchhHHhH
Q 020423 276 INTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 310 (326)
Q Consensus 276 I~s~~da~~~l~~GaD~V~iGRall~dP~l~~~~i 310 (326)
|.++++++++++.|||+|++||+++.||+++.+..
T Consensus 88 i~~~~~~~~~l~~Gad~V~ig~~~l~dp~~~~~~~ 122 (247)
T 3tdn_A 88 AGKMEHFLEAFLRGADKVSINTAAVENPSLITQIA 122 (247)
T ss_dssp CCSHHHHHHHHHTTCSEECCSHHHHHCTHHHHHHH
T ss_pred CCCHHHHHHHHHcCCCeeehhhHHhhChHHHHHHH
Confidence 99999999999999999999999999999644433
|
| >1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1 | Back alignment and structure |
|---|
Probab=98.97 E-value=2.4e-09 Score=96.08 Aligned_cols=156 Identities=10% Similarity=0.079 Sum_probs=101.2
Q ss_pred CCCcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHh-c--CCCcE--
Q 020423 123 EQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAA-N--TNVPV-- 197 (326)
Q Consensus 123 ~~~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~-~--~~~pv-- 197 (326)
.+.|+++.=.-.++++ ++.+.++|+|+|-+ |..+..+++++.++.+.... . .+.++
T Consensus 74 ~~iPvi~~Ggi~~~~~----~~~~~~~Gad~V~l---------------g~~~l~~p~~~~~~~~~~~~~~i~~~~~~~~ 134 (252)
T 1ka9_F 74 VFIPLTVGGGVRSLED----ARKLLLSGADKVSV---------------NSAAVRRPELIRELADHFGAQAVVLAIDARW 134 (252)
T ss_dssp CCSCEEEESSCCSHHH----HHHHHHHTCSEEEE---------------CHHHHHCTHHHHHHHHHHCGGGEEEEEEEEE
T ss_pred CCCCEEEECCcCCHHH----HHHHHHcCCCEEEE---------------ChHHHhCcHHHHHHHHHcCCCcEEEEEEEec
Confidence 4678887644445543 44444569999877 33334567778888777632 1 12221
Q ss_pred -----EEEeccCCCCC--ccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceE
Q 020423 198 -----SVKCRIGVDDH--DSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTF 270 (326)
Q Consensus 198 -----~vK~r~g~~~~--~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPV 270 (326)
.+++ .+|.+. .+..+. ++.+++.|++.|.+|+.... |. . ...+++.++++++.. ++||
T Consensus 135 ~~g~~~v~~-~g~~~~~~~~~~e~----~~~~~~~G~~~i~~~~~~~~--g~------~-~g~~~~~i~~l~~~~-~ipv 199 (252)
T 1ka9_F 135 RGDFPEVHV-AGGRVPTGLHAVEW----AVKGVELGAGEILLTSMDRD--GT------K-EGYDLRLTRMVAEAV-GVPV 199 (252)
T ss_dssp ETTEEEEEE-TTTTEEEEEEHHHH----HHHHHHHTCCEEEEEETTTT--TT------C-SCCCHHHHHHHHHHC-SSCE
T ss_pred CCCCEEEEE-CCCccccCCcHHHH----HHHHHHcCCCEEEEecccCC--CC------c-CCCCHHHHHHHHHHc-CCCE
Confidence 2333 245432 122332 23345689999999865421 11 0 112588888888765 9999
Q ss_pred EEeCCCCCHHHHHHHHHhCCChhhhhHHHHhCCchhHHhHHHh
Q 020423 271 TLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTA 313 (326)
Q Consensus 271 Ia~GgI~s~~da~~~l~~GaD~V~iGRall~dP~l~~~~i~~~ 313 (326)
|++|||.+++++.++++.|||+|++|++++.+|+.+ ..+.+.
T Consensus 200 ia~GGI~~~~d~~~~~~~Gadgv~vgsal~~~~~~~-~~~~~~ 241 (252)
T 1ka9_F 200 IASGGAGRMEHFLEAFQAGAEAALAASVFHFGEIPI-PKLKRY 241 (252)
T ss_dssp EEESCCCSHHHHHHHHHTTCSEEEESHHHHTTSSCH-HHHHHH
T ss_pred EEeCCCCCHHHHHHHHHCCCHHHHHHHHHHcCCCCH-HHHHHH
Confidence 999999999999999999999999999999999744 444433
|
| >1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1 | Back alignment and structure |
|---|
Probab=98.96 E-value=5.5e-09 Score=93.10 Aligned_cols=158 Identities=14% Similarity=0.134 Sum_probs=104.7
Q ss_pred CCCcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhc-C----CC--
Q 020423 123 EQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAAN-T----NV-- 195 (326)
Q Consensus 123 ~~~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~-~----~~-- 195 (326)
.+.|+++...-.++++. +.+.++|+|+|.++. .+..+++++.++.+..... + +.
T Consensus 76 ~~ipvi~~g~i~~~~~~----~~~~~~Gad~V~i~~---------------~~~~~~~~~~~~~~~~g~~~i~~~~~~~~ 136 (253)
T 1h5y_A 76 VSIPVLVGGGVRSLEDA----TTLFRAGADKVSVNT---------------AAVRNPQLVALLAREFGSQSTVVAIDAKW 136 (253)
T ss_dssp CSSCEEEESSCCSHHHH----HHHHHHTCSEEEESH---------------HHHHCTHHHHHHHHHHCGGGEEEEEEEEE
T ss_pred cCCCEEEECCCCCHHHH----HHHHHcCCCEEEECh---------------HHhhCcHHHHHHHHHcCCCcEEEEEEeec
Confidence 35788887766676653 445557999999973 1224567777776664321 1 11
Q ss_pred ---cEEEEeccCCCCC-ccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEE
Q 020423 196 ---PVSVKCRIGVDDH-DSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFT 271 (326)
Q Consensus 196 ---pv~vK~r~g~~~~-~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVI 271 (326)
++.++++.+.++. .+..+. ++.+++.|+|+|.+++++.. |.. ....++.++++.+.. ++||+
T Consensus 137 ~~g~~~v~~~~~~~~~~~~~~e~----~~~~~~~G~d~i~~~~~~~~--g~~-------~~~~~~~i~~l~~~~-~~pvi 202 (253)
T 1h5y_A 137 NGEYYEVYVKGGREATGLDAVKW----AKEVEELGAGEILLTSIDRD--GTG-------LGYDVELIRRVADSV-RIPVI 202 (253)
T ss_dssp CSSSEEEEETTTTEEEEEEHHHH----HHHHHHHTCSEEEEEETTTT--TTC-------SCCCHHHHHHHHHHC-SSCEE
T ss_pred CCCcEEEEEeCCeecCCCCHHHH----HHHHHhCCCCEEEEecccCC--CCc-------CcCCHHHHHHHHHhc-CCCEE
Confidence 1466666654321 123332 23445689999999876541 110 112478888887764 89999
Q ss_pred EeCCCCCHHHHHHHHHhCCChhhhhHHHHhCCchhHHhHHHhh
Q 020423 272 LNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAI 314 (326)
Q Consensus 272 a~GgI~s~~da~~~l~~GaD~V~iGRall~dP~l~~~~i~~~~ 314 (326)
++|||.+++++.++++.|||+|++||+++.+++- ...+.+.+
T Consensus 203 a~GGi~~~~~~~~~~~~Ga~~v~vgsal~~~~~~-~~~~~~~l 244 (253)
T 1h5y_A 203 ASGGAGRVEHFYEAAAAGADAVLAASLFHFRVLS-IAQVKRYL 244 (253)
T ss_dssp EESCCCSHHHHHHHHHTTCSEEEESHHHHTTSSC-HHHHHHHH
T ss_pred EeCCCCCHHHHHHHHHcCCcHHHHHHHHHcCCCC-HHHHHHHH
Confidence 9999999999999999999999999999998863 44444433
|
| >2nv1_A Pyridoxal biosynthesis lyase PDXS; (beta/alpha)8-barrel, synthase; 2.08A {Bacillus subtilis} PDB: 2nv2_A* 1znn_A | Back alignment and structure |
|---|
Probab=98.95 E-value=4.9e-09 Score=97.07 Aligned_cols=62 Identities=24% Similarity=0.365 Sum_probs=49.8
Q ss_pred cHHHHHHHHhcCCCceEE--EeCCCCCHHHHHHHHHhCCChhhhhHHHHh--CCchhHHhHHHhhhC
Q 020423 254 KYEYYYALLRDFPDLTFT--LNGGINTVDEVNAALRKGAHHVMVGRAAYQ--NPWYTLGHVDTAIYG 316 (326)
Q Consensus 254 ~~~~i~~i~~~~~~iPVI--a~GgI~s~~da~~~l~~GaD~V~iGRall~--dP~l~~~~i~~~~~~ 316 (326)
.++++.++.+. .++||+ ++|||.+++++.++++.|||+|++||+++. ||+...+.+.+.+..
T Consensus 195 ~~~~i~~i~~~-~~iPvi~~a~GGI~~~~d~~~~~~~GadgV~vGsai~~~~~p~~~~~~l~~~~~~ 260 (305)
T 2nv1_A 195 PYELLLQIKKD-GKLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSDNPAKFAKAIVEATTH 260 (305)
T ss_dssp CHHHHHHHHHH-TSCSSCEEBCSCCCSHHHHHHHHHTTCSCEEECGGGGGSSCHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHh-cCCCEEEEeccCCCCHHHHHHHHHcCCCEEEEcHHHHcCCCHHHHHHHHHHHHHH
Confidence 46777777765 489999 999999999999999999999999999996 454455555555443
|
| >1qo2_A Molecule: N-((5-phosphoribosyl)-formimino)-5-aminoimidazol- 4-carboxamid ribonucleotid...; isomerase, histidine biosynthesis; 1.85A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2cff_A 2w79_A | Back alignment and structure |
|---|
Probab=98.94 E-value=4.6e-09 Score=93.75 Aligned_cols=154 Identities=16% Similarity=0.162 Sum_probs=97.7
Q ss_pred CCCcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEE---
Q 020423 123 EQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSV--- 199 (326)
Q Consensus 123 ~~~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~v--- 199 (326)
.+.|+++.=.-.++++. +.+.++|+|+|-+ |..++.+|+++.++ +...+..-..+.+
T Consensus 72 ~~ipvi~~Ggi~~~~~~----~~~~~~Gad~V~l---------------g~~~l~~p~~~~~~-~~~g~~i~~~~d~~~~ 131 (241)
T 1qo2_A 72 FAEHIQIGGGIRSLDYA----EKLRKLGYRRQIV---------------SSKVLEDPSFLKSL-REIDVEPVFSLDTRGG 131 (241)
T ss_dssp GGGGEEEESSCCSHHHH----HHHHHTTCCEEEE---------------CHHHHHCTTHHHHH-HTTTCEEEEEEEEETT
T ss_pred cCCcEEEECCCCCHHHH----HHHHHCCCCEEEE---------------CchHhhChHHHHHH-HHcCCcEEEEEEecCC
Confidence 34566655333444433 3344579999855 33444567777776 5543211112222
Q ss_pred --EeccCCCCCc--cHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCC
Q 020423 200 --KCRIGVDDHD--SYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGG 275 (326)
Q Consensus 200 --K~r~g~~~~~--~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~Gg 275 (326)
++ .||.+.. +..+. ++.+++.|++.|.+|+++.. |. . ...+++.+.++++.. ++|||++||
T Consensus 132 ~v~~-~g~~~~~~~~~~e~----~~~~~~~G~~~i~~t~~~~~--g~------~-~g~~~~~i~~l~~~~-~iPvia~GG 196 (241)
T 1qo2_A 132 RVAF-KGWLAEEEIDPVSL----LKRLKEYGLEEIVHTEIEKD--GT------L-QEHDFSLTKKIAIEA-EVKVLAAGG 196 (241)
T ss_dssp EECC-TTCSSCSCCCHHHH----HHHHHTTTCCEEEEEETTHH--HH------T-CCCCHHHHHHHHHHH-TCEEEEESS
T ss_pred EEEE-CCceecCCCCHHHH----HHHHHhCCCCEEEEEeeccc--cc------C-CcCCHHHHHHHHHhc-CCcEEEECC
Confidence 22 3554422 33333 33456799999999986531 11 0 112488888887765 999999999
Q ss_pred CCCHHHHHHHHHh-----C-CChhhhhHHHHhCCchhHHhHHH
Q 020423 276 INTVDEVNAALRK-----G-AHHVMVGRAAYQNPWYTLGHVDT 312 (326)
Q Consensus 276 I~s~~da~~~l~~-----G-aD~V~iGRall~dP~l~~~~i~~ 312 (326)
|.+++++.++++. | ||+|++||+++..+.- ...+.+
T Consensus 197 I~~~~d~~~~~~~~~~~~G~adgv~vgsal~~~~~~-~~~~~~ 238 (241)
T 1qo2_A 197 ISSENSLKTAQKVHTETNGLLKGVIVGRAFLEGILT-VEVMKR 238 (241)
T ss_dssp CCSHHHHHHHHHHHHHTTTSEEEEEECHHHHTTSSC-HHHHHH
T ss_pred CCCHHHHHHHHhcccccCCeEeEEEeeHHHHcCCCC-HHHHHH
Confidence 9999999999997 9 9999999999998884 444433
|
| >2htm_A Thiazole biosynthesis protein THIG; thiamin biosynthesis, THIG, thermus thermophilus HB8, structural genomics, NPPSFA; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.93 E-value=1.9e-07 Score=83.54 Aligned_cols=218 Identities=11% Similarity=0.032 Sum_probs=126.9
Q ss_pred ccccccCeecCCcEEEccCCCCChH-HHHHHHHHcCCCcEEEecceeeccccccccchhhhhhcCCCCCcEEEEecC-CC
Q 020423 58 KAEMVARQYLPPWFSVAPMMDWTDN-HYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGG-SN 135 (326)
Q Consensus 58 ~p~~ig~~~l~nrivlAPM~~~s~~-~~r~~~~~~Gg~gli~te~~~~~~~~~~~~~~~~~~~~~~~~~piivQL~g-~~ 135 (326)
++++|++.++..|+++. -..+.+. .++....+.| +.++..-.-.. ... ......+++.-+ +.++..|-.| ++
T Consensus 2 ~~l~i~~~~~~srl~~G-tgky~~~~~~~~ai~asg-~eivtva~rR~-~~~--~~~~~~~~~~i~-~~~~lpntaG~~t 75 (268)
T 2htm_A 2 DTWKVGPVELKSRLILG-SGKYEDFGVMREAIAAAK-AEVVTVSVRRV-ELK--APGHVGLLEALE-GVRLLPNTAGART 75 (268)
T ss_dssp CCEEETTEEECCSEEEE-CSSCSCHHHHHHHHHHTT-CSEEEEEEEEC-C---------CHHHHTT-TSEEEEBCTTCCS
T ss_pred CceEECCEEeecceEEe-cCCCCCHHHHHHHHHHhC-CCEEEEEcccc-CCC--CCCcccHHHHHh-hhhccCcccCCCC
Confidence 46899999999999884 3345554 4555555554 66554442111 110 111123333222 5556666554 68
Q ss_pred HHHHHHHHHHHHHC-CCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHH
Q 020423 136 LDNLAKATELANAY-NYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQL 214 (326)
Q Consensus 136 ~~~f~~aA~~a~~a-G~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~ 214 (326)
.++...+++.++++ |-+.|.|-.- ....| +..++....+-.+.+.+. |+.+...+. +++.
T Consensus 76 aeeAv~~a~lare~~gt~~iKlEvi-------~d~~~---l~pD~~~tv~aa~~L~k~-Gf~Vlpy~~------~D~~-- 136 (268)
T 2htm_A 76 AEEAVRLARLGRLLTGERWVKLEVI-------PDPTY---LLPDPLETLKAAERLIEE-DFLVLPYMG------PDLV-- 136 (268)
T ss_dssp HHHHHHHHHHHHHHHCCSEEBCCCC-------SCTTT---TCCCHHHHHHHHHHHHHT-TCEECCEEC------SCHH--
T ss_pred HHHHHHHHHhhhHhcCcceeeeeec-------cCccc---cCcCHHHHHHHHHHHHHC-CCEEeeccC------CCHH--
Confidence 89999999988875 5567654321 11112 334555555544444332 433321221 1221
Q ss_pred HHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCC-ceEEEeCCCCCHHHHHHHHHhCCChh
Q 020423 215 CDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPD-LTFTLNGGINTVDEVNAALRKGAHHV 293 (326)
Q Consensus 215 ~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~-iPVIa~GgI~s~~da~~~l~~GaD~V 293 (326)
+++.+++.|.+.|---+..- |. + . ...+.+.+..+++...+ +|||..|||.+++|+..+++.|||+|
T Consensus 137 ---~ak~l~~~G~~aVmPlg~pI---Gs-G---~--Gi~~~~~L~~i~~~~~~~vPVI~~GGI~tpsDAa~AmeLGAdgV 204 (268)
T 2htm_A 137 ---LAKRLAALGTATVMPLAAPI---GS-G---W--GVRTRALLELFAREKASLPPVVVDAGLGLPSHAAEVMELGLDAV 204 (268)
T ss_dssp ---HHHHHHHHTCSCBEEBSSST---TT-C---C--CSTTHHHHHHHHHTTTTSSCBEEESCCCSHHHHHHHHHTTCCEE
T ss_pred ---HHHHHHhcCCCEEEecCccC---cC-C---c--ccCCHHHHHHHHHhcCCCCeEEEeCCCCCHHHHHHHHHcCCCEE
Confidence 34566778998883322111 11 0 0 11135567777763458 99999999999999999999999999
Q ss_pred hhhHHHHh--CCchhHHhHHH
Q 020423 294 MVGRAAYQ--NPWYTLGHVDT 312 (326)
Q Consensus 294 ~iGRall~--dP~l~~~~i~~ 312 (326)
.+|+++.. ||....+.+..
T Consensus 205 lVgSAI~~a~dP~~ma~af~~ 225 (268)
T 2htm_A 205 LVNTAIAEAQDPPAMAEAFRL 225 (268)
T ss_dssp EESHHHHTSSSHHHHHHHHHH
T ss_pred EEChHHhCCCCHHHHHHHHHH
Confidence 99999986 56655554444
|
| >2gl5_A Putative dehydratase protein; structural genomics, protein structure initiati nysgxrc; 1.60A {Salmonella typhimurium} SCOP: c.1.11.2 d.54.1.1 PDB: 4e6m_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=2e-08 Score=96.69 Aligned_cols=139 Identities=14% Similarity=0.079 Sum_probs=104.8
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecC------CCCCCcccCCCCcccccc-CCHHHHHHHHHHHHhcC--CCcEEEEeccCC
Q 020423 135 NLDNLAKATELANAYNYDEINLNC------GCPSPKVAGHGCFGVSLM-LDPKFVGEAMSVIAANT--NVPVSVKCRIGV 205 (326)
Q Consensus 135 ~~~~f~~aA~~a~~aG~d~Iein~------g~P~~~~~r~d~yGgsl~-~r~~~l~eiv~avr~~~--~~pv~vK~r~g~ 205 (326)
++++|.+.|+++.+.||+.|+|+. |........++.|||+.. +++++..+++++||+++ ++++.+....+|
T Consensus 150 ~~~~~~~~a~~~~~~Gf~~vKik~~~~~~~G~~~~~~~~~~~~GG~~~~~~~~~~~e~v~avR~a~G~d~~l~vDan~~~ 229 (410)
T 2gl5_A 150 TPEEYAEAARAALDDGYDAIKVDPLEIDRNGDDCVFQNRNRNYSGLLLADQLKMGEARIAAMREAMGDDADIIVEIHSLL 229 (410)
T ss_dssp SHHHHHHHHHHHHHTTCSEEEECSSSBCTTSCBTTTSSCCGGGGSCCCHHHHHHHHHHHHHHHHHHCSSSEEEEECTTCS
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeccccCCcccccccccccccccCccchhHHHHHHHHHHHHHHhcCCCCEEEEECCCCC
Confidence 899999999999999999999996 542100011236899875 57899999999999987 466777665544
Q ss_pred CCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHH
Q 020423 206 DDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAA 285 (326)
Q Consensus 206 ~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~ 285 (326)
+.++..++ .+.+++.|+++|. . ..++.+++.++++++.. ++||++.+.+.+++++.++
T Consensus 230 ----~~~~ai~~-~~~l~~~~i~~iE----~------------P~~~~~~~~~~~l~~~~-~iPIa~dE~~~~~~~~~~~ 287 (410)
T 2gl5_A 230 ----GTNSAIQF-AKAIEKYRIFLYE----E------------PIHPLNSDNMQKVSRST-TIPIATGERSYTRWGYREL 287 (410)
T ss_dssp ----CHHHHHHH-HHHHGGGCEEEEE----C------------SSCSSCHHHHHHHHHHC-SSCEEECTTCCTTHHHHHH
T ss_pred ----CHHHHHHH-HHHHHhcCCCeEE----C------------CCChhhHHHHHHHHhhC-CCCEEecCCcCCHHHHHHH
Confidence 34566664 4567889998875 1 11234577788887775 8999999999999999999
Q ss_pred HHhC-CChhhh
Q 020423 286 LRKG-AHHVMV 295 (326)
Q Consensus 286 l~~G-aD~V~i 295 (326)
++.| +|.|++
T Consensus 288 i~~~~~d~v~i 298 (410)
T 2gl5_A 288 LEKQSIAVAQP 298 (410)
T ss_dssp HHTTCCSEECC
T ss_pred HHcCCCCEEec
Confidence 9965 898876
|
| >1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1 | Back alignment and structure |
|---|
Probab=98.89 E-value=1.9e-08 Score=99.03 Aligned_cols=135 Identities=15% Similarity=0.034 Sum_probs=87.2
Q ss_pred HHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC-CCcEEEEeccCCCCCccHHHHHHHH
Q 020423 140 AKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFI 218 (326)
Q Consensus 140 ~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~-~~pv~vK~r~g~~~~~~~~e~~~~i 218 (326)
.+.++++.++|+|.|.++.. . | +.+...+.++++++.+ +.|+..+-- .+.+.
T Consensus 235 ~~~a~~l~~~G~d~ivi~~a------~-----g-----~~~~~~~~i~~l~~~~p~~pvi~G~v------~t~~~----- 287 (491)
T 1zfj_A 235 FERAEALFEAGADAIVIDTA------H-----G-----HSAGVLRKIAEIRAHFPNRTLIAGNI------ATAEG----- 287 (491)
T ss_dssp HHHHHHHHHHTCSEEEECCS------C-----T-----TCHHHHHHHHHHHHHCSSSCEEEEEE------CSHHH-----
T ss_pred HHHHHHHHHcCCCeEEEeee------c-----C-----cchhHHHHHHHHHHHCCCCcEeCCCc------cCHHH-----
Confidence 46677788889999999751 1 1 1234567888888887 788874411 12222
Q ss_pred HHHhhhCCccEEEEecCCc-ccCCCCcCCcCCCCCccHHHHHHHHhc--CCCceEEEeCCCCCHHHHHHHHHhCCChhhh
Q 020423 219 YKVSSLSPTRHFIIHSRKA-LLNGISPAENRTIPPLKYEYYYALLRD--FPDLTFTLNGGINTVDEVNAALRKGAHHVMV 295 (326)
Q Consensus 219 a~~le~~Gvd~I~v~~~~~-~~~g~~~~~~~~~~~~~~~~i~~i~~~--~~~iPVIa~GgI~s~~da~~~l~~GaD~V~i 295 (326)
++.+.++|+|.|.|..+.. +.....-..+ .....+.+.++.+. ..++|||+.|||++++|+.++++.|||+|++
T Consensus 288 a~~~~~~Gad~I~vg~g~g~~~~tr~~~~~---~~p~~~~l~~~~~~~~~~~ipvia~GGi~~~~di~kal~~GA~~v~v 364 (491)
T 1zfj_A 288 ARALYDAGVDVVKVGIGPGSICTTRVVAGV---GVPQVTAIYDAAAVAREYGKTIIADGGIKYSGDIVKALAAGGNAVML 364 (491)
T ss_dssp HHHHHHTTCSEEEECSSCCTTBCHHHHTCC---CCCHHHHHHHHHHHHHHTTCEEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHcCCCEEEECccCCcceEEeeecCC---CCCcHHHHHHHHHHHhhcCCCEEeeCCCCCHHHHHHHHHcCCcceee
Confidence 2234469999999952211 0000000000 11234555555431 1389999999999999999999999999999
Q ss_pred hHHHHhCCc
Q 020423 296 GRAAYQNPW 304 (326)
Q Consensus 296 GRall~dP~ 304 (326)
||+++..++
T Consensus 365 G~~~~~~~e 373 (491)
T 1zfj_A 365 GSMFAGTDE 373 (491)
T ss_dssp STTTTTBSS
T ss_pred CHHhhCCCc
Confidence 999997654
|
| >4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B* | Back alignment and structure |
|---|
Probab=98.88 E-value=1.1e-07 Score=93.07 Aligned_cols=130 Identities=16% Similarity=0.158 Sum_probs=83.5
Q ss_pred HHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC-CCcEEEEeccCCCCCccHHHHHHH
Q 020423 139 LAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDF 217 (326)
Q Consensus 139 f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~-~~pv~vK~r~g~~~~~~~~e~~~~ 217 (326)
..+-+..+.++|.|.|-|.... | ..+.+.+.++.|++.. +.+|.+. +..+.+.
T Consensus 282 ~~eR~~aLv~AGvD~iviD~ah-----------G-----hs~~v~~~i~~ik~~~p~~~viaG------NVaT~e~---- 335 (556)
T 4af0_A 282 DKDRLKLLAEAGLDVVVLDSSQ-----------G-----NSVYQIEFIKWIKQTYPKIDVIAG------NVVTREQ---- 335 (556)
T ss_dssp HHHHHHHHHHTTCCEEEECCSC-----------C-----CSHHHHHHHHHHHHHCTTSEEEEE------EECSHHH----
T ss_pred HHHHHHHHHhcCCcEEEEeccc-----------c-----ccHHHHHHHHHHHhhCCcceEEec------cccCHHH----
Confidence 3444555678899999886421 1 2456788899998876 5677664 1223332
Q ss_pred HHHHhhhCCccEEEEecCCc---ccCCCCcCCcCCCCCccHHHH---HHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCC
Q 020423 218 IYKVSSLSPTRHFIIHSRKA---LLNGISPAENRTIPPLKYEYY---YALLRDFPDLTFTLNGGINTVDEVNAALRKGAH 291 (326)
Q Consensus 218 ia~~le~~Gvd~I~v~~~~~---~~~g~~~~~~~~~~~~~~~~i---~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD 291 (326)
++.|.++|+|.+-|--+.. ..+-..+. ..|. ...+ ++..+++ .+|||+-|||.+.-|+.+++..|||
T Consensus 336 -a~~Li~aGAD~vkVGiGpGSiCtTr~v~Gv---G~PQ--~tAi~~~a~~a~~~-~vpvIADGGI~~sGDi~KAlaaGAd 408 (556)
T 4af0_A 336 -AAQLIAAGADGLRIGMGSGSICITQEVMAV---GRPQ--GTAVYAVAEFASRF-GIPCIADGGIGNIGHIAKALALGAS 408 (556)
T ss_dssp -HHHHHHHTCSEEEECSSCSTTBCCTTTCCS---CCCH--HHHHHHHHHHHGGG-TCCEEEESCCCSHHHHHHHHHTTCS
T ss_pred -HHHHHHcCCCEEeecCCCCcccccccccCC---CCcH--HHHHHHHHHHHHHc-CCCEEecCCcCcchHHHHHhhcCCC
Confidence 2234468999999853221 11111110 1122 3333 3444554 8999999999999999999999999
Q ss_pred hhhhhHHHHh
Q 020423 292 HVMVGRAAYQ 301 (326)
Q Consensus 292 ~V~iGRall~ 301 (326)
.||+|+.|-.
T Consensus 409 ~VMlGsllAG 418 (556)
T 4af0_A 409 AVMMGGLLAG 418 (556)
T ss_dssp EEEESTTTTT
T ss_pred EEEEchhhcc
Confidence 9999987753
|
| >3zen_D Fatty acid synthase; transferase, mycolic acid biosynthesis, multifunctional ENZY substrate channeling; HET: FMN; 7.50A {Mycobacterium smegmatis} PDB: 4b3y_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=1.8e-09 Score=124.18 Aligned_cols=196 Identities=15% Similarity=0.091 Sum_probs=125.3
Q ss_pred CCcEEEccCCC-CChHHHHHHHHHcCCCcEEEec-ceeeccccccccchhhhhhcCCCCCcEEEEecCCCHHH----H--
Q 020423 68 PPWFSVAPMMD-WTDNHYRTLARLISKHAWLYTE-MLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSNLDN----L-- 139 (326)
Q Consensus 68 ~nrivlAPM~~-~s~~~~r~~~~~~Gg~gli~te-~~~~~~~~~~~~~~~~~~~~~~~~~piivQL~g~~~~~----f-- 139 (326)
+.+|++|||++ .+++.+...+.++||.|.+-.. +...+.+......++. ..+.+.|+.+|++..++.. +
T Consensus 427 ~~PIi~a~M~~~~s~~~LaaAVs~AGglG~l~~~g~~~~~~l~~~i~~~r~---~~~~~~p~~vNl~~~~p~~~~~~~g~ 503 (3089)
T 3zen_D 427 RSPILLAGMTPTTVDAKIVAAAANAGHWAELAGGGQVTEQIFNDRIAELET---LLEPGRAIQFNTLFLDPYLWKLQVGG 503 (3089)
T ss_dssp SCSEEECCCHHHHTSHHHHHHHHHTTCEEEECSTTCCSHHHHHHHHHHHHH---HSCTTCCCEEEEECSCHHHHHHHHHH
T ss_pred CCCEEeCCCcCCcCCHHHHHHHHhCCCceeecCCCCCCHHHHHHHHHHHHH---hcCCCCceeechhhcChhhhhhccCH
Confidence 66899999985 5689999999999999987433 3343333222222222 2334778999998777643 1
Q ss_pred HHHHHHHHHCC--CCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEE-EEeccCCCCCccHHHHHH
Q 020423 140 AKATELANAYN--YDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVS-VKCRIGVDDHDSYNQLCD 216 (326)
Q Consensus 140 ~~aA~~a~~aG--~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~-vK~r~g~~~~~~~~e~~~ 216 (326)
.+..+.+.++| +|+|-+.+|.|. .+...++++.+++. |+.+. ++ . .+.++..+
T Consensus 504 ~~~~~~~~~~g~~vdgv~~~aG~P~----------------~ee~~~~i~~l~~~-Gi~~i~~~--~-----~t~~~a~~ 559 (3089)
T 3zen_D 504 KRLVQRARQSGAPIDGLVVSAGIPD----------------LEEAVDIIDELNEV-GISHVVFK--P-----GTVEQIRS 559 (3089)
T ss_dssp HHHHHHHHHTTCSCCEEEEESSCCC----------------HHHHHHHHTSTTHH-HHCSEEEC--C-----CSHHHHHH
T ss_pred HHHHHHHHHcCCCceEEEEeCCCCc----------------hhHhHHHHHHHHHc-CCEEEEEe--C-----CCHHHHHH
Confidence 35677888899 899999887773 22333444444332 33222 22 1 12332212
Q ss_pred HHHHHhhhCCcc------EEEEecCCcccCCCCcCCcCCCCCccHHHH----HHHHhcCCCceEEEeCCCCCHHHHHHHH
Q 020423 217 FIYKVSSLSPTR------HFIIHSRKALLNGISPAENRTIPPLKYEYY----YALLRDFPDLTFTLNGGINTVDEVNAAL 286 (326)
Q Consensus 217 ~ia~~le~~Gvd------~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i----~~i~~~~~~iPVIa~GgI~s~~da~~~l 286 (326)
+++.|+| .|+++|.++ +|+.+.. ....++ .++ ++..++|||+.|||.+++++..++
T Consensus 560 -----~~~i~~d~~~~~y~vv~~G~ea--GGH~g~~------~~~~ll~~~~~~i-r~~~~iPViaaGGI~d~~~vaaal 625 (3089)
T 3zen_D 560 -----VIRIAAEVPTKPVIVHIEGGRA--GGHHSWE------DLDDLLLATYSEL-RSRSNITICVGGGIGTPERSAEYL 625 (3089)
T ss_dssp -----HHHHHTTSTTSCEEEEECCSSS--SEECCSC------CHHHHHHHHHHHH-TTCTTEEEEEESSCCCTTTTHHHH
T ss_pred -----HHHhhhhcCCCcEEEEEeCCCc--CCCCCcc------cHHHHHHHHHHHH-hhcCCCeEEEEeCCCCHHHHHHHh
Confidence 2234445 788888764 2332210 112333 343 444699999999999999999999
Q ss_pred -----------HhCCChhhhhHHHHhCCc
Q 020423 287 -----------RKGAHHVMVGRAAYQNPW 304 (326)
Q Consensus 287 -----------~~GaD~V~iGRall~dP~ 304 (326)
..|||+|+||++++..++
T Consensus 626 ~g~ws~~~~~p~lGAdGV~vGTrfl~t~E 654 (3089)
T 3zen_D 626 SGRWAEVHGYPLMPIDGILVGTAAMATLE 654 (3089)
T ss_dssp HTGGGGTTTCCCCCCSEEECSSTTTTCTT
T ss_pred ccccccccCccCCCCCEEEecHHHHhCcc
Confidence 889999999999998765
|
| >2poz_A Putative dehydratase; octamer, structural genomics, P protein structure initiative, NEW YORK SGX research center structural genomics, nysgxrc; 2.04A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=98.85 E-value=2.1e-08 Score=95.99 Aligned_cols=138 Identities=8% Similarity=0.013 Sum_probs=107.1
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEecCCCCC---CcccCCCCccccccCCHHHHHHHHHHHHhcC--CCcEEEEeccCCCCC
Q 020423 134 SNLDNLAKATELANAYNYDEINLNCGCPS---PKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDH 208 (326)
Q Consensus 134 ~~~~~f~~aA~~a~~aG~d~Iein~g~P~---~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~--~~pv~vK~r~g~~~~ 208 (326)
.++++|.++|+++.+.||+.++|+.++.. ..+ + ..|||+.++++++..+++++||+++ ++++.+....+|
T Consensus 136 ~~~~~~~~~a~~~~~~Gf~~vKik~g~~~~g~~~~-~-~~~gg~~~~~~~~~~e~v~avr~a~G~d~~l~vD~n~~~--- 210 (392)
T 2poz_A 136 DTPDEFARAVERPLKEGYGALKFYPLAQRVGSALQ-H-VTRRSMSAEAIELAYRRVKAVRDAAGPEIELMVDLSGGL--- 210 (392)
T ss_dssp CSHHHHHHHTHHHHHTTCSEEEECCCCEEETTEEE-C-CBTTBCCHHHHHHHHHHHHHHHHHHCTTSEEEEECTTCS---
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeccccccccccc-c-cccCCcchhhHHHHHHHHHHHHHhcCCCCEEEEECCCCC---
Confidence 57999999999999999999999988532 112 3 3689988889999999999999987 467777665554
Q ss_pred ccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHh
Q 020423 209 DSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRK 288 (326)
Q Consensus 209 ~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~ 288 (326)
+.++..++ .+.+++.|+++|. . ..++.+++.++++++.. ++||++.+.+.+++++.++++.
T Consensus 211 -~~~~a~~~-~~~l~~~~i~~iE----~------------P~~~~~~~~~~~l~~~~-~ipIa~dE~~~~~~~~~~~i~~ 271 (392)
T 2poz_A 211 -TTDETIRF-CRKIGELDICFVE----E------------PCDPFDNGALKVISEQI-PLPIAVGERVYTRFGFRKIFEL 271 (392)
T ss_dssp -CHHHHHHH-HHHHGGGCEEEEE----C------------CSCTTCHHHHHHHHHHC-SSCEEECTTCCHHHHHHHHHTT
T ss_pred -CHHHHHHH-HHHHHhcCCCEEE----C------------CCCcccHHHHHHHHhhC-CCCEEecCCcCCHHHHHHHHHc
Confidence 34566664 4557889998874 1 11233577788887765 8999999999999999999986
Q ss_pred C-CChhhh
Q 020423 289 G-AHHVMV 295 (326)
Q Consensus 289 G-aD~V~i 295 (326)
| +|.|++
T Consensus 272 ~~~d~v~i 279 (392)
T 2poz_A 272 QACGIIQP 279 (392)
T ss_dssp TCCSEECC
T ss_pred CCCCEEec
Confidence 5 898877
|
| >3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=7e-08 Score=87.83 Aligned_cols=51 Identities=16% Similarity=0.242 Sum_probs=44.4
Q ss_pred cHHHHHHHHhcCC-CceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhCCc
Q 020423 254 KYEYYYALLRDFP-DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW 304 (326)
Q Consensus 254 ~~~~i~~i~~~~~-~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~dP~ 304 (326)
+.+.+.++.+..+ ++||++.|||.+++++.++++.|+|+|.||++++..++
T Consensus 199 dl~~~~~l~~~v~~~~pvVaegGI~t~edv~~l~~~GadgvlVGsal~~a~d 250 (272)
T 3qja_A 199 DRDCFARIAPGLPSSVIRIAESGVRGTADLLAYAGAGADAVLVGEGLVTSGD 250 (272)
T ss_dssp CTTHHHHHGGGSCTTSEEEEESCCCSHHHHHHHHHTTCSEEEECHHHHTCSC
T ss_pred CHHHHHHHHHhCcccCEEEEECCCCCHHHHHHHHHcCCCEEEEcHHHhCCCC
Confidence 3555667766654 79999999999999999999999999999999998777
|
| >2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.82 E-value=1.9e-08 Score=90.94 Aligned_cols=158 Identities=11% Similarity=0.042 Sum_probs=89.6
Q ss_pred CCCcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHH---hcC--CCcE
Q 020423 123 EQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA---ANT--NVPV 197 (326)
Q Consensus 123 ~~~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr---~~~--~~pv 197 (326)
.+.|+++.=+-+++++.. .+.++|+|+|-+...... + ..+++.+.++++... +.+ +.++
T Consensus 73 ~~iPvi~~ggi~~~~~i~----~~~~~Gad~v~lg~~~~~---------~---~~~~~~~~~~~~~~g~~~~~i~~~~d~ 136 (266)
T 2w6r_A 73 TTLPIIASGGAGKMEHFL----EAFLAGADKALAASVFHF---------R---EIDMRELKEYLKKHGGSGQAVVVAIDA 136 (266)
T ss_dssp CCSCEEEESCCCSTHHHH----HHHHHTCSEEECCCCC------------------CHHHHHHCC----CCCEEEEEEEE
T ss_pred cCCCEEEECCCCCHHHHH----HHHHcCCcHhhhhHHHHh---------C---CCCHHHHHHHHHHcCCCCCEEEEEEEE
Confidence 467888764445556544 334579999888422110 0 014667777665543 111 1121
Q ss_pred -------EEEeccCCCCC--ccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCc
Q 020423 198 -------SVKCRIGVDDH--DSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDL 268 (326)
Q Consensus 198 -------~vK~r~g~~~~--~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~i 268 (326)
.|+++ +|.+. .+..+. ++.+++.|++.|.+++.+.. |. . ...+++.++++.+. +++
T Consensus 137 ~~~~g~~~v~~~-g~~~~~~~~~~e~----~~~~~~~G~~~i~~t~~~~~--g~------~-~g~~~~~i~~l~~~-~~i 201 (266)
T 2w6r_A 137 KRVDGEFMVFTH-SGKKNTGILLRDW----VVEVEKRGAGEILLTSIDRD--GT------K-SGYDTEMIRFVRPL-TTL 201 (266)
T ss_dssp EEETTEEEEEET-TTTEEEEEEHHHH----HHHHHHTTCSEEEEEETTTT--TT------C-SCCCHHHHHHHGGG-CCS
T ss_pred EecCCCEEEEEC-CCceecchhHHHH----HHHHHHcCCCEEEEEeecCC--CC------c-CCCCHHHHHHHHHH-cCC
Confidence 23332 34321 123333 23445789999999865431 11 0 11248888887766 499
Q ss_pred eEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhCCchhHHhHHH
Q 020423 269 TFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDT 312 (326)
Q Consensus 269 PVIa~GgI~s~~da~~~l~~GaD~V~iGRall~dP~l~~~~i~~ 312 (326)
|||++|||.+++++.++++.|||+|++|++++.+|+. ...+.+
T Consensus 202 pvia~GGI~~~ed~~~~~~~Gadgv~vgsal~~~~~~-~~~~~~ 244 (266)
T 2w6r_A 202 PIIASGGAGKMEHFLEAFLAGADAALAASVFHFREID-MRELKE 244 (266)
T ss_dssp CEEEESCCCSHHHHHHHHHHTCSEEEESTTTC------------
T ss_pred CEEEeCCCCCHHHHHHHHHcCCHHHHccHHHHcCCCC-HHHHHH
Confidence 9999999999999999999999999999999999985 444443
|
| >1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A | Back alignment and structure |
|---|
Probab=98.81 E-value=1.4e-08 Score=88.29 Aligned_cols=150 Identities=17% Similarity=0.230 Sum_probs=96.5
Q ss_pred CCcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEecc
Q 020423 124 QHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRI 203 (326)
Q Consensus 124 ~~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~ 203 (326)
+.|+++.+.+.+.+++.+.++.+.++|++.||+|+.+|. + .+.++.+|+..+..+.++...
T Consensus 9 ~~~~i~~~~~~~~~~~~~~~~~~~~~G~~~iev~~~~~~---------~----------~~~i~~ir~~~~~~~~ig~~~ 69 (205)
T 1wa3_A 9 KHKIVAVLRANSVEEAKEKALAVFEGGVHLIEITFTVPD---------A----------DTVIKELSFLKEKGAIIGAGT 69 (205)
T ss_dssp HHCEEEEECCSSHHHHHHHHHHHHHTTCCEEEEETTSTT---------H----------HHHHHHTHHHHHTTCEEEEES
T ss_pred hCCEEEEEecCCHHHHHHHHHHHHHCCCCEEEEeCCChh---------H----------HHHHHHHHHHCCCCcEEEecc
Confidence 467999999999999999999999999999999986542 1 245666666542223233211
Q ss_pred CCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcc-------------cCC-CCcC----------CcCCCCC---ccHH
Q 020423 204 GVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKAL-------------LNG-ISPA----------ENRTIPP---LKYE 256 (326)
Q Consensus 204 g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~-------------~~g-~~~~----------~~~~~~~---~~~~ 256 (326)
..+.++.. ...+.|+|++ ++..... ..| .++. +.-...+ ...+
T Consensus 70 ----v~~~~~~~-----~a~~~Gad~i-v~~~~~~~~~~~~~~~g~~vi~g~~t~~e~~~a~~~Gad~vk~~~~~~~g~~ 139 (205)
T 1wa3_A 70 ----VTSVEQCR-----KAVESGAEFI-VSPHLDEEISQFCKEKGVFYMPGVMTPTELVKAMKLGHTILKLFPGEVVGPQ 139 (205)
T ss_dssp ----CCSHHHHH-----HHHHHTCSEE-ECSSCCHHHHHHHHHHTCEEECEECSHHHHHHHHHTTCCEEEETTHHHHHHH
T ss_pred ----cCCHHHHH-----HHHHcCCCEE-EcCCCCHHHHHHHHHcCCcEECCcCCHHHHHHHHHcCCCEEEEcCccccCHH
Confidence 11233321 2234789998 6644320 000 0000 0000011 2245
Q ss_pred HHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhCCc
Q 020423 257 YYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW 304 (326)
Q Consensus 257 ~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~dP~ 304 (326)
.++++.+..+++||++.|||+ ++++.++++.|||+|.+|++++. ++
T Consensus 140 ~~~~l~~~~~~~pvia~GGI~-~~~~~~~~~~Ga~~v~vGs~i~~-~d 185 (205)
T 1wa3_A 140 FVKAMKGPFPNVKFVPTGGVN-LDNVCEWFKAGVLAVGVGSALVK-GT 185 (205)
T ss_dssp HHHHHHTTCTTCEEEEBSSCC-TTTHHHHHHHTCSCEEECHHHHC-SC
T ss_pred HHHHHHHhCCCCcEEEcCCCC-HHHHHHHHHCCCCEEEECccccC-CC
Confidence 666666655589999999996 78999999999999999999998 55
|
| >1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A | Back alignment and structure |
|---|
Probab=98.80 E-value=4.6e-08 Score=88.44 Aligned_cols=171 Identities=15% Similarity=0.186 Sum_probs=100.4
Q ss_pred CcEEEEecCCCH--HHHHHHHHHHHHCCCCEEEecCCCCCCccc---------CCCCccccccCCHHHHHHHHHHHHhcC
Q 020423 125 HPIVLQIGGSNL--DNLAKATELANAYNYDEINLNCGCPSPKVA---------GHGCFGVSLMLDPKFVGEAMSVIAANT 193 (326)
Q Consensus 125 ~piivQL~g~~~--~~f~~aA~~a~~aG~d~Iein~g~P~~~~~---------r~d~yGgsl~~r~~~l~eiv~avr~~~ 193 (326)
..++.-+...++ +++.+.++.+.++|+|.||++..+..+... +.-+.| -+++...++++++|+.+
T Consensus 18 ~~~~~~i~~g~~~~~~~~~~~~~l~~~Gad~ielg~p~~dp~~dg~~i~~a~~~al~~g----~~~~~~~~~i~~ir~~~ 93 (262)
T 1rd5_A 18 TAFIPYITAGDPDLATTAEALRLLDGCGADVIELGVPCSDPYIDGPIIQASVARALASG----TTMDAVLEMLREVTPEL 93 (262)
T ss_dssp CEEEEEEETTSSCHHHHHHHHHHHHHTTCSSEEEECCCSCCTTSCHHHHHHHHHHHTTT----CCHHHHHHHHHHHGGGC
T ss_pred ceEEEEeeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCcccCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHhcC
Confidence 345666655444 889999999999999999997654322100 000112 36788899999999988
Q ss_pred CCcEEEEeccCCCCCc------------------cHHHHHHHHHHHhhhCCccEEEE-ecCCcc----------------
Q 020423 194 NVPVSVKCRIGVDDHD------------------SYNQLCDFIYKVSSLSPTRHFII-HSRKAL---------------- 238 (326)
Q Consensus 194 ~~pv~vK~r~g~~~~~------------------~~~e~~~~ia~~le~~Gvd~I~v-~~~~~~---------------- 238 (326)
+.|+.+-...+..... ..++..++ .....+.|++.+.. ...+..
T Consensus 94 ~~Pv~~m~~~~~~~~~~~~~a~~aGadgv~v~d~~~~~~~~~-~~~~~~~g~~~i~~~a~~t~~e~~~~~~~~~~g~v~~ 172 (262)
T 1rd5_A 94 SCPVVLLSYYKPIMFRSLAKMKEAGVHGLIVPDLPYVAAHSL-WSEAKNNNLELVLLTTPAIPEDRMKEITKASEGFVYL 172 (262)
T ss_dssp SSCEEEECCSHHHHSCCTHHHHHTTCCEEECTTCBTTTHHHH-HHHHHHTTCEECEEECTTSCHHHHHHHHHHCCSCEEE
T ss_pred CCCEEEEecCcHHHHHHHHHHHHcCCCEEEEcCCChhhHHHH-HHHHHHcCCceEEEECCCCCHHHHHHHHhcCCCeEEE
Confidence 9998774222100000 00111111 11122333332221 111100
Q ss_pred --cCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhC
Q 020423 239 --LNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN 302 (326)
Q Consensus 239 --~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~d 302 (326)
..|.++.. ...++...+.+.++++.. ++||++.|||++++++.++++.|||+|.+|+++...
T Consensus 173 ~s~~G~tG~~-~~~~~~~~~~i~~v~~~~-~~pI~vgGGI~~~e~~~~~~~~GAdgvvVGSai~~~ 236 (262)
T 1rd5_A 173 VSVNGVTGPR-ANVNPRVESLIQEVKKVT-NKPVAVGFGISKPEHVKQIAQWGADGVIIGSAMVRQ 236 (262)
T ss_dssp ECSSCCBCTT-SCBCTHHHHHHHHHHHHC-SSCEEEESCCCSHHHHHHHHHTTCSEEEECHHHHHH
T ss_pred ecCCCCCCCC-cCCCchHHHHHHHHHhhc-CCeEEEECCcCCHHHHHHHHHcCCCEEEEChHHHhH
Confidence 01111111 012222345677776654 899999999999999999999999999999998753
|
| >1mdl_A Mandelate racemase; isomerase, mandelate pathway, magnesium; HET: RMN SMN; 1.85A {Pseudomonas aeruginosa} SCOP: c.1.11.2 d.54.1.1 PDB: 1mdr_A* 3uxk_A* 3uxl_A* 1dtn_A* 1mra_A* 2mnr_A 1mns_A | Back alignment and structure |
|---|
Probab=98.80 E-value=8.9e-08 Score=90.45 Aligned_cols=141 Identities=9% Similarity=0.019 Sum_probs=105.6
Q ss_pred cEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC--CCcEEEEecc
Q 020423 126 PIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRI 203 (326)
Q Consensus 126 piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~--~~pv~vK~r~ 203 (326)
|+-..+...+++++.++|+++.+.||+.|++|+|++ ++++..+++++||+++ ++++.++...
T Consensus 135 p~~~~~g~~~~~~~~~~a~~~~~~Gf~~iKik~g~~----------------~~~~~~e~v~avr~a~g~~~~l~vDan~ 198 (359)
T 1mdl_A 135 QAYDSHSLDGVKLATERAVTAAELGFRAVKTRIGYP----------------ALDQDLAVVRSIRQAVGDDFGIMVDYNQ 198 (359)
T ss_dssp EEEEECCSCHHHHHHHHHHHHHHTTCSEEEEECCCS----------------SHHHHHHHHHHHHHHHCSSSEEEEECTT
T ss_pred eeeeecCCCCHHHHHHHHHHHHHcCCCEEEEecCCC----------------CHHHHHHHHHHHHHHhCCCCEEEEECCC
Confidence 343333225789999999999999999999998751 3678889999999987 5778887766
Q ss_pred CCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHH
Q 020423 204 GVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVN 283 (326)
Q Consensus 204 g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~ 283 (326)
+|+ .++..++ .+.+++.|+++|. . ..++.+++.++++++.. ++||++.+.+.+++++.
T Consensus 199 ~~~----~~~a~~~-~~~l~~~~i~~iE----~------------P~~~~~~~~~~~l~~~~-~iPI~~de~~~~~~~~~ 256 (359)
T 1mdl_A 199 SLD----VPAAIKR-SQALQQEGVTWIE----E------------PTLQHDYEGHQRIQSKL-NVPVQMGENWLGPEEMF 256 (359)
T ss_dssp CSC----HHHHHHH-HHHHHHHTCSCEE----C------------CSCTTCHHHHHHHHHTC-SSCEEECTTCCSHHHHH
T ss_pred CCC----HHHHHHH-HHHHHHhCCCeEE----C------------CCChhhHHHHHHHHHhC-CCCEEeCCCCCCHHHHH
Confidence 653 4455553 4557788999874 1 11234578888887664 89999999999999999
Q ss_pred HHHHhC-CChhhhhHHHHhCCc
Q 020423 284 AALRKG-AHHVMVGRAAYQNPW 304 (326)
Q Consensus 284 ~~l~~G-aD~V~iGRall~dP~ 304 (326)
++++.| +|+|++-...+....
T Consensus 257 ~~i~~~~~d~v~ik~~~~GGi~ 278 (359)
T 1mdl_A 257 KALSIGACRLAMPDAMKIGGVT 278 (359)
T ss_dssp HHHHTTCCSEECCBTTTTTHHH
T ss_pred HHHHcCCCCEEeecchhhCCHH
Confidence 999965 999999765544443
|
| >1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A | Back alignment and structure |
|---|
Probab=98.77 E-value=3.3e-08 Score=88.48 Aligned_cols=167 Identities=14% Similarity=0.130 Sum_probs=106.4
Q ss_pred CcEEEEecCCCH--HHHHHHHHHHHHCCCCEEEec--CCCCCCcccCCCCcccc-----c--cCCHHHHHHHHHHHHhcC
Q 020423 125 HPIVLQIGGSNL--DNLAKATELANAYNYDEINLN--CGCPSPKVAGHGCFGVS-----L--MLDPKFVGEAMSVIAANT 193 (326)
Q Consensus 125 ~piivQL~g~~~--~~f~~aA~~a~~aG~d~Iein--~g~P~~~~~r~d~yGgs-----l--~~r~~~l~eiv~avr~~~ 193 (326)
..++..|...++ +++.+.++.+.++ +|.||+. +++|... +.+-.. + -.+.....++++++|+.+
T Consensus 5 ~~~~~~i~~~~~~~~~~~~~a~~~~~~-ad~iel~~p~sdp~~D----G~~~~~~~~~al~~g~~~~~~~~~i~~i~~~~ 79 (248)
T 1geq_A 5 GSLIPYLTAGDPDKQSTLNFLLALDEY-AGAIELGIPFSDPIAD----GKTIQESHYRALKNGFKLREAFWIVKEFRRHS 79 (248)
T ss_dssp TEEEEEEETTSSCHHHHHHHHHHHGGG-BSCEEEECCCSCCTTS----CHHHHHHHHHHHHTTCCHHHHHHHHHHHHTTC
T ss_pred ccEEEEEeCCCCCHHHHHHHHHHHHHc-CCEEEECCCCCCCCCC----CHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhC
Confidence 457888887777 6899999999999 9999998 4455421 111000 0 025677889999999988
Q ss_pred CCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCc-----c------c-----------------------
Q 020423 194 NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKA-----L------L----------------------- 239 (326)
Q Consensus 194 ~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~-----~------~----------------------- 239 (326)
+.|+.+....+.......++. +. .+.++|+|.++++.-.. . +
T Consensus 80 ~~pv~~~~~~~~~~~~~~~~~---~~-~~~~~Gad~v~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~t~~e~~~~~~~~ 155 (248)
T 1geq_A 80 STPIVLMTYYNPIYRAGVRNF---LA-EAKASGVDGILVVDLPVFHAKEFTEIAREEGIKTVFLAAPNTPDERLKVIDDM 155 (248)
T ss_dssp CCCEEEEECHHHHHHHCHHHH---HH-HHHHHTCCEEEETTCCGGGHHHHHHHHHHHTCEEEEEECTTCCHHHHHHHHHH
T ss_pred CCCEEEEeccchhhhcCHHHH---HH-HHHHCCCCEEEECCCChhhHHHHHHHHHHhCCCeEEEECCCCHHHHHHHHHhc
Confidence 889887542210000001222 22 23357888888764110 0 0
Q ss_pred ----------CCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhC
Q 020423 240 ----------NGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN 302 (326)
Q Consensus 240 ----------~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~d 302 (326)
.|..+.. ....+...+.++++++.. ++||++.|||++++++.++++.|||+|.+|++++..
T Consensus 156 ~d~~i~~~~~~G~~g~~-~~~~~~~~~~i~~l~~~~-~~pi~~~GGI~~~e~i~~~~~~Gad~vivGsai~~~ 226 (248)
T 1geq_A 156 TTGFVYLVSLYGTTGAR-EEIPKTAYDLLRRAKRIC-RNKVAVGFGVSKREHVVSLLKEGANGVVVGSALVKI 226 (248)
T ss_dssp CSSEEEEECCC--------CCCHHHHHHHHHHHHHC-SSCEEEESCCCSHHHHHHHHHTTCSEEEECHHHHHH
T ss_pred CCCeEEEEECCccCCCC-CCCChhHHHHHHHHHhhc-CCCEEEEeecCCHHHHHHHHHcCCCEEEEcHHHHhh
Confidence 0000000 001122356777777665 899999999999999999999999999999999865
|
| >2ovl_A Putative racemase; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.13A {Streptomyces coelicolor A3} PDB: 3ck5_A | Back alignment and structure |
|---|
Probab=98.76 E-value=8e-08 Score=91.25 Aligned_cols=133 Identities=13% Similarity=0.081 Sum_probs=104.4
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC--CCcEEEEeccCCCCCccHH
Q 020423 135 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYN 212 (326)
Q Consensus 135 ~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~--~~pv~vK~r~g~~~~~~~~ 212 (326)
+++++.++|+++.+.||+.++|++|++ +++...+++++||+++ ++++.++...+|+ .+
T Consensus 146 ~~e~~~~~a~~~~~~Gf~~iKik~g~~----------------~~~~~~e~v~avr~a~G~d~~l~vDan~~~~----~~ 205 (371)
T 2ovl_A 146 PVADLKTQADRFLAGGFRAIKMKVGRP----------------DLKEDVDRVSALREHLGDSFPLMVDANMKWT----VD 205 (371)
T ss_dssp CHHHHHHHHHHHHHTTCSCEEEECCCS----------------SHHHHHHHHHHHHHHHCTTSCEEEECTTCSC----HH
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCC----------------CHHHHHHHHHHHHHHhCCCCeEEEECCCCCC----HH
Confidence 799999999999999999999998753 3677889999999987 5788888776663 44
Q ss_pred HHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhC-CC
Q 020423 213 QLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKG-AH 291 (326)
Q Consensus 213 e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~G-aD 291 (326)
+..++ .+.+++.|+++|. . ..++.+++.++++++.. ++||++.+.+.+++++.++++.| +|
T Consensus 206 ~a~~~-~~~l~~~~i~~iE----q------------P~~~~d~~~~~~l~~~~-~iPI~~dE~~~~~~~~~~~i~~~~~d 267 (371)
T 2ovl_A 206 GAIRA-ARALAPFDLHWIE----E------------PTIPDDLVGNARIVRES-GHTIAGGENLHTLYDFHNAVRAGSLT 267 (371)
T ss_dssp HHHHH-HHHHGGGCCSEEE----C------------CSCTTCHHHHHHHHHHH-CSCEEECTTCCSHHHHHHHHHHTCCS
T ss_pred HHHHH-HHHHHhcCCCEEE----C------------CCCcccHHHHHHHHhhC-CCCEEeCCCCCCHHHHHHHHHcCCCC
Confidence 55554 4567889999884 1 11234577777877764 89999999999999999999965 99
Q ss_pred hhhhhHHHHhCCch
Q 020423 292 HVMVGRAAYQNPWY 305 (326)
Q Consensus 292 ~V~iGRall~dP~l 305 (326)
.|++-..-+..+.-
T Consensus 268 ~v~ik~~~~GGi~~ 281 (371)
T 2ovl_A 268 LPEPDVSNIGGYTT 281 (371)
T ss_dssp EECCCTTTTTSHHH
T ss_pred EEeeCccccCCHHH
Confidence 99997766655553
|
| >1rvk_A Isomerase/lactonizing enzyme; enolase superfamily, MR.GI-17937161, NYSGXRC, target T1522, structural genomics, PSI; 1.70A {Agrobacterium tumefaciens} SCOP: c.1.11.2 d.54.1.1 | Back alignment and structure |
|---|
Probab=98.76 E-value=2.2e-07 Score=88.45 Aligned_cols=139 Identities=9% Similarity=0.013 Sum_probs=107.5
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC--CCcEEEEeccCCCCCccH
Q 020423 134 SNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSY 211 (326)
Q Consensus 134 ~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~--~~pv~vK~r~g~~~~~~~ 211 (326)
.+++++.+.|+++.+.||+.++||.+++. || ++ .+++...+++++||+++ ++++.++...+|+ .
T Consensus 148 ~~~e~~~~~a~~~~~~Gf~~iKik~g~~~--------~~-~~-~~~~~~~e~v~avr~a~g~d~~l~vDan~~~~----~ 213 (382)
T 1rvk_A 148 ATPEDYGRFAETLVKRGYKGIKLHTWMPP--------VS-WA-PDVKMDLKACAAVREAVGPDIRLMIDAFHWYS----R 213 (382)
T ss_dssp SSHHHHHHHHHHHHHHTCSEEEEECCCTT--------ST-TC-CCHHHHHHHHHHHHHHHCTTSEEEEECCTTCC----H
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEcCCcCc--------cc-cc-cchHHHHHHHHHHHHHhCCCCeEEEECCCCCC----H
Confidence 57999999999999999999999988653 22 33 47999999999999987 5778777765553 4
Q ss_pred HHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCC-HHHHHHHHHhC-
Q 020423 212 NQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT-VDEVNAALRKG- 289 (326)
Q Consensus 212 ~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s-~~da~~~l~~G- 289 (326)
++..++ .+.+++.|+++|. . ..++.+++.++++++.. ++||++.+.+.+ ++++.++++.|
T Consensus 214 ~~a~~~-~~~l~~~~i~~iE----~------------P~~~~~~~~~~~l~~~~-~iPIa~dE~~~~~~~~~~~~i~~~~ 275 (382)
T 1rvk_A 214 TDALAL-GRGLEKLGFDWIE----E------------PMDEQSLSSYKWLSDNL-DIPVVGPESAAGKHWHRAEWIKAGA 275 (382)
T ss_dssp HHHHHH-HHHHHTTTCSEEE----C------------CSCTTCHHHHHHHHHHC-SSCEEECSSCSSHHHHHHHHHHTTC
T ss_pred HHHHHH-HHHHHhcCCCEEe----C------------CCChhhHHHHHHHHhhC-CCCEEEeCCccCcHHHHHHHHHcCC
Confidence 555554 4567889999884 1 11234577788887765 899999999999 99999999965
Q ss_pred CChhhhhHHHHhCCc
Q 020423 290 AHHVMVGRAAYQNPW 304 (326)
Q Consensus 290 aD~V~iGRall~dP~ 304 (326)
+|.|++--.-+....
T Consensus 276 ~d~v~ik~~~~GGit 290 (382)
T 1rvk_A 276 CDILRTGVNDVGGIT 290 (382)
T ss_dssp CSEEEECHHHHTSHH
T ss_pred CCEEeeCchhcCCHH
Confidence 999998766554443
|
| >2rdx_A Mandelate racemase/muconate lactonizing enzyme, P; enolase, structural genomics, PSI, protein structu initiative, nysgrc; 2.00A {Roseovarius nubinhibens} | Back alignment and structure |
|---|
Probab=98.76 E-value=1.5e-07 Score=89.58 Aligned_cols=129 Identities=9% Similarity=0.012 Sum_probs=101.3
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC--CCcEEEEeccCCCCCccH
Q 020423 134 SNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSY 211 (326)
Q Consensus 134 ~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~--~~pv~vK~r~g~~~~~~~ 211 (326)
.++++|.++|+++.++||+.|+||+|+ ++++..+++++||+++ ++++.++...+|+ .
T Consensus 144 ~~~~~~~~~a~~~~~~Gf~~iKik~g~-----------------~~~~~~e~v~avr~a~g~d~~l~vDan~~~~----~ 202 (379)
T 2rdx_A 144 RSEAETRAELARHRAAGYRQFQIKVGA-----------------DWQSDIDRIRACLPLLEPGEKAMADANQGWR----V 202 (379)
T ss_dssp SCSHHHHHHHHHHHHTTCCEEEEECCS-----------------CHHHHHHHHHHHGGGSCTTCEEEEECTTCSC----H
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeccC-----------------CHHHHHHHHHHHHHhcCCCCEEEEECCCCCC----H
Confidence 578999999999999999999998764 3688899999999998 4778887766553 4
Q ss_pred HHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhC-C
Q 020423 212 NQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKG-A 290 (326)
Q Consensus 212 ~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~G-a 290 (326)
++..+ +++.+++.|+ +|. . + .+ +++.++++++.. ++||++.+.+.++++++++++.| +
T Consensus 203 ~~a~~-~~~~l~~~~i-~iE----~-----------P-~~--~~~~~~~l~~~~-~iPI~~de~i~~~~~~~~~i~~~~~ 261 (379)
T 2rdx_A 203 DNAIR-LARATRDLDY-ILE----Q-----------P-CR--SYEECQQVRRVA-DQPMKLDECVTGLHMAQRIVADRGA 261 (379)
T ss_dssp HHHHH-HHHHTTTSCC-EEE----C-----------C-SS--SHHHHHHHHTTC-CSCEEECTTCCSHHHHHHHHHHTCC
T ss_pred HHHHH-HHHHHHhCCe-EEe----C-----------C-cC--CHHHHHHHHhhC-CCCEEEeCCcCCHHHHHHHHHcCCC
Confidence 45555 4556788999 773 1 0 11 577788877664 89999999999999999999965 9
Q ss_pred ChhhhhHHHHhCCc
Q 020423 291 HHVMVGRAAYQNPW 304 (326)
Q Consensus 291 D~V~iGRall~dP~ 304 (326)
|.|++-...+....
T Consensus 262 d~v~ik~~~~GGit 275 (379)
T 2rdx_A 262 EICCLKISNLGGLS 275 (379)
T ss_dssp SEEEEETTTTTSHH
T ss_pred CEEEEeccccCCHH
Confidence 99998666555544
|
| >2nql_A AGR_PAT_674P, isomerase/lactonizing enzyme; enolase, structural genomics, protein structure initiative, nysgxrc; 1.80A {Agrobacterium tumefaciens str} PDB: 4dn1_A | Back alignment and structure |
|---|
Probab=98.75 E-value=1.2e-07 Score=90.46 Aligned_cols=141 Identities=5% Similarity=-0.043 Sum_probs=106.6
Q ss_pred cEEEEec-CCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC--CCcEEEEec
Q 020423 126 PIVLQIG-GSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCR 202 (326)
Q Consensus 126 piivQL~-g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~--~~pv~vK~r 202 (326)
|+-..+. ..++++|.++|+++.++||+.++||+|+ .++++ .+++++||+++ ++++.++..
T Consensus 154 p~~~~~g~~~~~e~~~~~a~~~~~~Gf~~vKik~g~----------------~~~~~-~e~v~avr~a~g~d~~l~vDan 216 (388)
T 2nql_A 154 PAYVSGLPERTLKARGELAKYWQDRGFNAFKFATPV----------------ADDGP-AAEIANLRQVLGPQAKIAADMH 216 (388)
T ss_dssp EEEEECCCCSSHHHHHHHHHHHHHTTCCEEEEEGGG----------------CTTCH-HHHHHHHHHHHCTTSEEEEECC
T ss_pred EeeEEeCCCCCHHHHHHHHHHHHHhCCCEEEEeCCC----------------CChHH-HHHHHHHHHHhCCCCEEEEECC
Confidence 3434442 3589999999999999999999998753 13567 89999999987 577888776
Q ss_pred cCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHH
Q 020423 203 IGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEV 282 (326)
Q Consensus 203 ~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da 282 (326)
.+|+ .++..++ .+.+++.|+++|. . ..++.+++.++++++.. ++||++.+.+.+++++
T Consensus 217 ~~~~----~~~a~~~-~~~l~~~~i~~iE----q------------P~~~~d~~~~~~l~~~~-~iPI~~dE~~~~~~~~ 274 (388)
T 2nql_A 217 WNQT----PERALEL-IAEMQPFDPWFAE----A------------PVWTEDIAGLEKVSKNT-DVPIAVGEEWRTHWDM 274 (388)
T ss_dssp SCSC----HHHHHHH-HHHHGGGCCSCEE----C------------CSCTTCHHHHHHHHTSC-CSCEEECTTCCSHHHH
T ss_pred CCCC----HHHHHHH-HHHHhhcCCCEEE----C------------CCChhhHHHHHHHHhhC-CCCEEEeCCcCCHHHH
Confidence 6553 4455554 4567889999884 1 01234578788877664 8999999999999999
Q ss_pred HHHHHhC-CChhhhhHHHHhCCchh
Q 020423 283 NAALRKG-AHHVMVGRAAYQNPWYT 306 (326)
Q Consensus 283 ~~~l~~G-aD~V~iGRall~dP~l~ 306 (326)
.++++.| +|+|++-... ..+.-+
T Consensus 275 ~~~i~~~~~d~v~ik~~~-GGit~~ 298 (388)
T 2nql_A 275 RARIERCRIAIVQPEMGH-KGITNF 298 (388)
T ss_dssp HHHHTTSCCSEECCCHHH-HCHHHH
T ss_pred HHHHHcCCCCEEEecCCC-CCHHHH
Confidence 9999965 9999997777 666543
|
| >2qq6_A Mandelate racemase/muconate lactonizing enzyme- like protein; enolase, Mg ION, PSI-2, NYSGXRC, structural genomics; 2.90A {Rubrobacter xylanophilus dsm 9941} | Back alignment and structure |
|---|
Probab=98.70 E-value=2.4e-07 Score=89.09 Aligned_cols=133 Identities=12% Similarity=0.099 Sum_probs=102.2
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecC----CCCCCcccCCCCcccccc--CCHHHHHHHHHHHHhcCC--CcEEEEeccCCC
Q 020423 135 NLDNLAKATELANAYNYDEINLNC----GCPSPKVAGHGCFGVSLM--LDPKFVGEAMSVIAANTN--VPVSVKCRIGVD 206 (326)
Q Consensus 135 ~~~~f~~aA~~a~~aG~d~Iein~----g~P~~~~~r~d~yGgsl~--~r~~~l~eiv~avr~~~~--~pv~vK~r~g~~ 206 (326)
+++++.+.|+++.+.||+.|+++. |.... . |||++. +++++..+++++||++++ +++.+....+|
T Consensus 149 ~~~~~~~~a~~~~~~Gf~~vKik~~~~~G~~~~-----~-~~G~~~~~~~~~~~~e~v~avRea~G~d~~l~vDan~~~- 221 (410)
T 2qq6_A 149 SNEEYIAVAREAVERGFDAIKLDVDDITGPLHR-----D-FWNGAISPREHEAMVARVAAVREAVGPEVEVAIDMHGRF- 221 (410)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEEECCCSSSTTCS-----C-SSSCCCCHHHHHHHHHHHHHHHHHHCSSSEEEEECTTCC-
T ss_pred CHHHHHHHHHHHHHcCCCEEEeeccccCCcccC-----C-cCccccchhhHHHHHHHHHHHHHhcCCCCEEEEECCCCC-
Confidence 689999999999999999999998 43321 1 677776 478899999999999874 56666655444
Q ss_pred CCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHH
Q 020423 207 DHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAAL 286 (326)
Q Consensus 207 ~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l 286 (326)
+.++..++ .+.+++.|+++|. . ..++.+++.++++.+.. ++||++.+.+.+++++.+++
T Consensus 222 ---~~~~a~~~-~~~l~~~~i~~iE----e------------P~~~~d~~~~~~l~~~~-~iPIa~dE~~~~~~~~~~~i 280 (410)
T 2qq6_A 222 ---DIPSSIRF-ARAMEPFGLLWLE----E------------PTPPENLDALAEVRRST-STPICAGENVYTRFDFRELF 280 (410)
T ss_dssp ---CHHHHHHH-HHHHGGGCCSEEE----C------------CSCTTCHHHHHHHHTTC-SSCEEECTTCCSHHHHHHHH
T ss_pred ---CHHHHHHH-HHHHhhcCCCeEE----C------------CCChhhHHHHHHHHhhC-CCCEEeCCCcCCHHHHHHHH
Confidence 35566664 4567889999875 1 11233577777877664 89999999999999999999
Q ss_pred HhC-CChhhh
Q 020423 287 RKG-AHHVMV 295 (326)
Q Consensus 287 ~~G-aD~V~i 295 (326)
+.| +|.|++
T Consensus 281 ~~~~~d~v~i 290 (410)
T 2qq6_A 281 AKRAVDYVMP 290 (410)
T ss_dssp HTTCCSEECC
T ss_pred HcCCCCEEec
Confidence 966 899887
|
| >2p8b_A Mandelate racemase/muconate lactonizing enzyme family protein; enolase superfamily, prediction of function; HET: NSK; 1.70A {Bacillus cereus atcc 14579} PDB: 2p88_A* 2p8c_A* | Back alignment and structure |
|---|
Probab=98.66 E-value=3.2e-07 Score=86.93 Aligned_cols=140 Identities=10% Similarity=0.165 Sum_probs=107.5
Q ss_pred cEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC--CCcEEEEecc
Q 020423 126 PIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRI 203 (326)
Q Consensus 126 piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~--~~pv~vK~r~ 203 (326)
|+..++.+.+++++.+.|+++.+.||+.++||.|. +++...+++++||+++ ++++.++...
T Consensus 132 ~~~~~i~~~~~~~~~~~a~~~~~~Gf~~iKik~g~-----------------~~~~~~e~v~avr~a~g~~~~l~vDan~ 194 (369)
T 2p8b_A 132 PVTHVLSIADPENMAEEAASMIQKGYQSFKMKVGT-----------------NVKEDVKRIEAVRERVGNDIAIRVDVNQ 194 (369)
T ss_dssp ECCEEECSCCHHHHHHHHHHHHHTTCCEEEEECCS-----------------CHHHHHHHHHHHHHHHCTTSEEEEECTT
T ss_pred eeeEEecCCChHHHHHHHHHHHHcCcCEEEEEeCC-----------------CHHHHHHHHHHHHHHhCCCCeEEEECCC
Confidence 34456666789999999999999999999998752 3778889999999987 5677777666
Q ss_pred CCCCCccHHHHH-HHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHH
Q 020423 204 GVDDHDSYNQLC-DFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEV 282 (326)
Q Consensus 204 g~~~~~~~~e~~-~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da 282 (326)
+|+. ++.. + +.+.+++.|+++|. . ..++.+++.++++++.. ++||++.+.+.+++++
T Consensus 195 ~~~~----~~a~~~-~~~~l~~~~i~~iE----q------------P~~~~d~~~~~~l~~~~-~iPI~~dE~~~~~~~~ 252 (369)
T 2p8b_A 195 GWKN----SANTLT-ALRSLGHLNIDWIE----Q------------PVIADDIDAMAHIRSKT-DLPLMIDEGLKSSREM 252 (369)
T ss_dssp TTBS----HHHHHH-HHHTSTTSCCSCEE----C------------CBCTTCHHHHHHHHHTC-CSCEEESTTCCSHHHH
T ss_pred CCCH----HHHHHH-HHHHHHhCCCcEEE----C------------CCCcccHHHHHHHHHhC-CCCEEeCCCCCCHHHH
Confidence 6542 3444 5 35567889999874 1 11234577788887764 8999999999999999
Q ss_pred HHHHHhC-CChhhhhHHHHhCCc
Q 020423 283 NAALRKG-AHHVMVGRAAYQNPW 304 (326)
Q Consensus 283 ~~~l~~G-aD~V~iGRall~dP~ 304 (326)
.++++.| +|.|++-..-+....
T Consensus 253 ~~~i~~~~~d~v~ik~~~~GGit 275 (369)
T 2p8b_A 253 RQIIKLEAADKVNIKLMKCGGIY 275 (369)
T ss_dssp HHHHHHTCCSEEEECHHHHTSHH
T ss_pred HHHHHhCCCCEEEeecchhCCHH
Confidence 9999965 999999777665554
|
| >2og9_A Mandelate racemase/muconate lactonizing enzyme; NYSGXRC, protein structure initiative (PSI) II, PSI-2, 9382A mandelate racemase; 1.90A {Polaromonas SP} PDB: 3cb3_A* | Back alignment and structure |
|---|
Probab=98.66 E-value=3.6e-07 Score=87.43 Aligned_cols=127 Identities=14% Similarity=0.102 Sum_probs=99.2
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC--CCcEEEEeccCCCCCccHH
Q 020423 135 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYN 212 (326)
Q Consensus 135 ~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~--~~pv~vK~r~g~~~~~~~~ 212 (326)
++++|.++|+++.++||+.|+++.|. .++++..+++++||+++ ++++.+....+| +.+
T Consensus 162 ~~e~~~~~a~~~~~~Gf~~vKik~g~----------------~~~~~~~e~v~avR~avg~d~~l~vDan~~~----~~~ 221 (393)
T 2og9_A 162 PIDQLMVNASASIERGIGGIKLKVGQ----------------PDGALDIARVTAVRKHLGDAVPLMVDANQQW----DRP 221 (393)
T ss_dssp CHHHHHHHHHHHHHTTCCCEEEECCC----------------SCHHHHHHHHHHHHHHHCTTSCEEEECTTCC----CHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecCC----------------CCHHHHHHHHHHHHHHcCCCCEEEEECCCCC----CHH
Confidence 79999999999999999999998651 24788899999999987 577877765555 345
Q ss_pred HHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhC-CC
Q 020423 213 QLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKG-AH 291 (326)
Q Consensus 213 e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~G-aD 291 (326)
+..++ .+.+++.|+++|. . ..++.+++..+++++.. ++||++.+.+.++++++++++.| +|
T Consensus 222 ~a~~~-~~~l~~~~i~~iE----~------------P~~~~~~~~~~~l~~~~-~iPIa~dE~~~~~~~~~~~i~~~~~d 283 (393)
T 2og9_A 222 TAQRM-CRIFEPFNLVWIE----E------------PLDAYDHEGHAALALQF-DTPIATGEMLTSAAEHGDLIRHRAAD 283 (393)
T ss_dssp HHHHH-HHHHGGGCCSCEE----C------------CSCTTCHHHHHHHHHHC-SSCEEECTTCCSHHHHHHHHHTTCCS
T ss_pred HHHHH-HHHHHhhCCCEEE----C------------CCCcccHHHHHHHHHhC-CCCEEeCCCcCCHHHHHHHHHCCCCC
Confidence 65564 4557889999884 1 11233577777887765 89999999999999999999966 99
Q ss_pred hhhhhHHH
Q 020423 292 HVMVGRAA 299 (326)
Q Consensus 292 ~V~iGRal 299 (326)
.|++=-.-
T Consensus 284 ~v~ik~~~ 291 (393)
T 2og9_A 284 YLMPDAPR 291 (393)
T ss_dssp EECCCHHH
T ss_pred EEeeCccc
Confidence 99885443
|
| >1qo2_A Molecule: N-((5-phosphoribosyl)-formimino)-5-aminoimidazol- 4-carboxamid ribonucleotid...; isomerase, histidine biosynthesis; 1.85A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2cff_A 2w79_A | Back alignment and structure |
|---|
Probab=98.65 E-value=1.2e-08 Score=91.08 Aligned_cols=101 Identities=10% Similarity=0.111 Sum_probs=73.2
Q ss_pred EEEEeccCCCCCcc--HHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeC
Q 020423 197 VSVKCRIGVDDHDS--YNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNG 274 (326)
Q Consensus 197 v~vK~r~g~~~~~~--~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~G 274 (326)
..||++.||.+..+ ..+..+ +++.++++|+|+|+++..+....+ ...+++.++++. . .++||+++|
T Consensus 13 ~~vk~~~G~~~~~~~~~~~~~~-~a~~~~~~Gad~i~v~d~~~~~~~---------~~~~~~~i~~i~-~-~~ipvi~~G 80 (241)
T 1qo2_A 13 KVARMIKGRKENTIFYEKDPVE-LVEKLIEEGFTLIHVVDLSNAIEN---------SGENLPVLEKLS-E-FAEHIQIGG 80 (241)
T ss_dssp EEEEEGGGCGGGEEEESSCHHH-HHHHHHHTTCCCEEEEEHHHHHHC---------CCTTHHHHHHGG-G-GGGGEEEES
T ss_pred EEEEEeccccccceecCcCHHH-HHHHHHHcCCCEEEEecccccccC---------CchhHHHHHHHH-h-cCCcEEEEC
Confidence 56788888754321 112233 345667899999999865431001 123477777776 5 489999999
Q ss_pred CCCCHHHHHHHHHhCCChhhhhHHHHhCCchhHHhH
Q 020423 275 GINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 310 (326)
Q Consensus 275 gI~s~~da~~~l~~GaD~V~iGRall~dP~l~~~~i 310 (326)
||.+.+++.++++.|||+|++|++++.||++ ...+
T Consensus 81 gi~~~~~~~~~~~~Gad~V~lg~~~l~~p~~-~~~~ 115 (241)
T 1qo2_A 81 GIRSLDYAEKLRKLGYRRQIVSSKVLEDPSF-LKSL 115 (241)
T ss_dssp SCCSHHHHHHHHHTTCCEEEECHHHHHCTTH-HHHH
T ss_pred CCCCHHHHHHHHHCCCCEEEECchHhhChHH-HHHH
Confidence 9999999999999999999999999999995 4444
|
| >2qgy_A Enolase from the environmental genome shotgun sequencing of the sargasso SEA; structural genomics, unknown function, PSI-2; 1.80A {Environmental sample} | Back alignment and structure |
|---|
Probab=98.65 E-value=5.9e-07 Score=85.85 Aligned_cols=132 Identities=8% Similarity=0.058 Sum_probs=101.7
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC--CCcEEEEeccCCCCCcc
Q 020423 133 GSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDS 210 (326)
Q Consensus 133 g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~--~~pv~vK~r~g~~~~~~ 210 (326)
+.++++|.++|+++.++||+.|+|+.+. + .+++..+++++||+++ ++++.++...+|+
T Consensus 147 ~~~~~~~~~~a~~~~~~Gf~~vKik~g~--------~--------~~~~~~e~v~avR~a~G~d~~l~vDan~~~~---- 206 (391)
T 2qgy_A 147 KKDTNDYLRQIEKFYGKKYGGIKIYPML--------D--------SLSISIQFVEKVREIVGDELPLMLDLAVPED---- 206 (391)
T ss_dssp CCCHHHHHHHHHHHHHTTCSCEEECCCC--------S--------SHHHHHHHHHHHHHHHCSSSCEEEECCCCSC----
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEccCC--------C--------hHHHHHHHHHHHHHHhCCCCEEEEEcCCCCC----
Confidence 4689999999999999999999998651 1 1688899999999987 5788888766653
Q ss_pred HHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhC-
Q 020423 211 YNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKG- 289 (326)
Q Consensus 211 ~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~G- 289 (326)
.++..++ .+.+++.|+++|. .+ .++.+++.++++++.. ++||++.+.+.+++++.++++.|
T Consensus 207 ~~~a~~~-~~~l~~~~i~~iE----qP------------~~~~d~~~~~~l~~~~-~iPIa~dE~~~~~~~~~~~i~~~~ 268 (391)
T 2qgy_A 207 LDQTKSF-LKEVSSFNPYWIE----EP------------VDGENISLLTEIKNTF-NMKVVTGEKQSGLVHFRELISRNA 268 (391)
T ss_dssp HHHHHHH-HHHHGGGCCSEEE----CS------------SCTTCHHHHHHHHHHC-SSCEEECTTCCSHHHHHHHHHTTC
T ss_pred HHHHHHH-HHHHHhcCCCeEe----CC------------CChhhHHHHHHHHhhC-CCCEEEcCCcCCHHHHHHHHHcCC
Confidence 4555554 4557889999884 10 1234577788887765 89999999999999999999965
Q ss_pred CChhhhhHHHHhC
Q 020423 290 AHHVMVGRAAYQN 302 (326)
Q Consensus 290 aD~V~iGRall~d 302 (326)
+|.|++-..-+..
T Consensus 269 ~d~v~ik~~~~GG 281 (391)
T 2qgy_A 269 ADIFNPDISGMGG 281 (391)
T ss_dssp CSEECCBTTTSSC
T ss_pred CCEEEECcchhCC
Confidence 9999985444333
|
| >3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0 | Back alignment and structure |
|---|
Probab=98.64 E-value=1.1e-06 Score=79.66 Aligned_cols=63 Identities=16% Similarity=0.167 Sum_probs=52.0
Q ss_pred cHHHHHHHHhcCC-CceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhCCchhHHhHHHhhhCC
Q 020423 254 KYEYYYALLRDFP-DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGA 317 (326)
Q Consensus 254 ~~~~i~~i~~~~~-~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~dP~l~~~~i~~~~~~~ 317 (326)
+++...++.+..+ ++|||+-|||.+++|+.++.+.|+|+|.||++++..++ ....+.+.+.+.
T Consensus 206 dl~~~~~L~~~ip~~~~vIaesGI~t~edv~~l~~~Ga~gvLVG~almr~~d-~~~~~~~l~~g~ 269 (272)
T 3tsm_A 206 NLAVSERLAKMAPSDRLLVGESGIFTHEDCLRLEKSGIGTFLIGESLMRQHD-VAAATRALLTGA 269 (272)
T ss_dssp CTHHHHHHHHHSCTTSEEEEESSCCSHHHHHHHHTTTCCEEEECHHHHTSSC-HHHHHHHHHHC-
T ss_pred ChHHHHHHHHhCCCCCcEEEECCCCCHHHHHHHHHcCCCEEEEcHHHcCCcC-HHHHHHHHHhcc
Confidence 3555666666654 69999999999999999999999999999999999998 577777766553
|
| >2zbt_A Pyridoxal biosynthesis lyase PDXS; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.65A {Thermus thermophilus} PDB: 2iss_A* | Back alignment and structure |
|---|
Probab=98.62 E-value=1.2e-07 Score=87.22 Aligned_cols=61 Identities=20% Similarity=0.274 Sum_probs=48.0
Q ss_pred cHHHHHHHHhcCCCceEE--EeCCCCCHHHHHHHHHhCCChhhhhHHHHh--CCchhHHhHHHhhh
Q 020423 254 KYEYYYALLRDFPDLTFT--LNGGINTVDEVNAALRKGAHHVMVGRAAYQ--NPWYTLGHVDTAIY 315 (326)
Q Consensus 254 ~~~~i~~i~~~~~~iPVI--a~GgI~s~~da~~~l~~GaD~V~iGRall~--dP~l~~~~i~~~~~ 315 (326)
.++.++++++.. ++||+ +.|||.+++++.++++.|||+|++|++++. ||....+.+.+.+.
T Consensus 195 ~~~~i~~l~~~~-~~pvi~~a~GGI~~~e~i~~~~~aGadgvvvGsai~~~~dp~~~~~~l~~~i~ 259 (297)
T 2zbt_A 195 PFELVKWVHDHG-RLPVVNFAAGGIATPADAALMMHLGMDGVFVGSGIFKSGDPRKRARAIVRAVA 259 (297)
T ss_dssp CHHHHHHHHHHS-SCSSCEEBCSSCCSHHHHHHHHHTTCSEEEECGGGGGSSCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhc-CCCcEEEeeCCCCCHHHHHHHHHcCCCEEEEchHHhCCCCHHHHHHHHHHHHH
Confidence 356677776654 88988 999999999999999999999999999995 56544555544443
|
| >3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina} | Back alignment and structure |
|---|
Probab=98.62 E-value=2.2e-07 Score=84.30 Aligned_cols=167 Identities=14% Similarity=0.109 Sum_probs=98.9
Q ss_pred CcEEEEecCCC--HHHHHHHHHHHHHCCCCEEEecC--CCCCCc---cc----CCCCccccccCCHHHHHHHHHHHHhc-
Q 020423 125 HPIVLQIGGSN--LDNLAKATELANAYNYDEINLNC--GCPSPK---VA----GHGCFGVSLMLDPKFVGEAMSVIAAN- 192 (326)
Q Consensus 125 ~piivQL~g~~--~~~f~~aA~~a~~aG~d~Iein~--g~P~~~---~~----r~d~yGgsl~~r~~~l~eiv~avr~~- 192 (326)
+.++.-+...+ .+.+.+.++.+.++|+|.|||.+ +-|... ++ |-=+.| -+.+.+.++++++|+.
T Consensus 18 ~ali~yi~aGdP~~~~~~~~~~~l~~~GaD~iElgiPfSDP~aDGp~Iq~a~~~AL~~G----~~~~~~~~~v~~ir~~~ 93 (267)
T 3vnd_A 18 GAFVPFVTIGDPSPELSLKIIQTLVDNGADALELGFPFSDPLADGPVIQGANLRSLAAG----TTSSDCFDIITKVRAQH 93 (267)
T ss_dssp CEEEEEEETTSSCHHHHHHHHHHHHHTTCSSEEEECCCSCCTTCCHHHHHHHHHHHHTT----CCHHHHHHHHHHHHHHC
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHhcC
Confidence 44666666544 49999999999999999999984 333311 00 000012 3456778999999987
Q ss_pred CCCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecC--------------------------Cc---------
Q 020423 193 TNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSR--------------------------KA--------- 237 (326)
Q Consensus 193 ~~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~--------------------------~~--------- 237 (326)
++.|+.+-.-.+.-....++. ++. .+.++|+|.+.++.- +.
T Consensus 94 ~~~Pivlm~Y~npv~~~g~e~---f~~-~~~~aGvdgvii~Dlp~ee~~~~~~~~~~~gl~~i~liaP~t~~eri~~i~~ 169 (267)
T 3vnd_A 94 PDMPIGLLLYANLVFANGIDE---FYT-KAQAAGVDSVLIADVPVEESAPFSKAAKAHGIAPIFIAPPNADADTLKMVSE 169 (267)
T ss_dssp TTCCEEEEECHHHHHHHCHHH---HHH-HHHHHTCCEEEETTSCGGGCHHHHHHHHHTTCEEECEECTTCCHHHHHHHHH
T ss_pred CCCCEEEEecCcHHHHhhHHH---HHH-HHHHcCCCEEEeCCCCHhhHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHH
Confidence 788987642111000001111 111 223455555554321 10
Q ss_pred ------c---cCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHh
Q 020423 238 ------L---LNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 301 (326)
Q Consensus 238 ------~---~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~ 301 (326)
+ ..|.++.. ...++...+.+.++++. .++||+..|||++++++.+.+..|||+|.+|++++.
T Consensus 170 ~~~gfvY~vS~~GvTG~~-~~~~~~~~~~v~~vr~~-~~~pv~vGfGI~~~e~~~~~~~~gADgvVVGSaiv~ 240 (267)
T 3vnd_A 170 QGEGYTYLLSRAGVTGTE-SKAGEPIENILTQLAEF-NAPPPLLGFGIAEPEQVRAAIKAGAAGAISGSAVVK 240 (267)
T ss_dssp HCCSCEEESCCCCCC---------CHHHHHHHHHTT-TCCCEEECSSCCSHHHHHHHHHTTCSEEEECHHHHH
T ss_pred hCCCcEEEEecCCCCCCc-cCCcHHHHHHHHHHHHh-cCCCEEEECCcCCHHHHHHHHHcCCCEEEECHHHHH
Confidence 0 01212211 01122234566666554 589999999999999999999999999999999874
|
| >1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ... | Back alignment and structure |
|---|
Probab=98.61 E-value=5.5e-07 Score=81.74 Aligned_cols=166 Identities=16% Similarity=0.154 Sum_probs=99.7
Q ss_pred CcEEEEecCCCH--HHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCcccccc----------CCHHHHHHHHHHHHhc
Q 020423 125 HPIVLQIGGSNL--DNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLM----------LDPKFVGEAMSVIAAN 192 (326)
Q Consensus 125 ~piivQL~g~~~--~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~----------~r~~~l~eiv~avr~~ 192 (326)
+.++.-+...++ +.+.+.++.+.++|+|.||+.. |...... | |-... -+.+...++++++|+.
T Consensus 17 ~~~i~~i~~gdp~~~~~~~~~~~l~~~GaD~ieig~--P~sdp~~-D--G~~i~~a~~~al~~G~~~~~~~~~v~~ir~~ 91 (268)
T 1qop_A 17 GAFVPFVTLGDPGIEQSLKIIDTLIDAGADALELGV--PFSDPLA-D--GPTIQNANLRAFAAGVTPAQCFEMLAIIREK 91 (268)
T ss_dssp CEEEEEEETTSSCHHHHHHHHHHHHHTTCSSEEEEC--CCSCCTT-C--CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred ceEEEEeeCCCCCHHHHHHHHHHHHHCCCCEEEECC--CCCCccC-C--CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhc
Confidence 345666655455 8899999999999999999965 2211000 1 11111 2456777999999998
Q ss_pred -CCCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcc---------------------------------
Q 020423 193 -TNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKAL--------------------------------- 238 (326)
Q Consensus 193 -~~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~--------------------------------- 238 (326)
++.|+.+=...+.-.....++ ++. .+.++|+|.++++.-...
T Consensus 92 ~~~~Pv~lm~y~n~v~~~g~~~---~~~-~~~~aGadgii~~d~~~e~~~~~~~~~~~~g~~~i~l~~p~t~~~~i~~i~ 167 (268)
T 1qop_A 92 HPTIPIGLLMYANLVFNNGIDA---FYA-RCEQVGVDSVLVADVPVEESAPFRQAALRHNIAPIFICPPNADDDLLRQVA 167 (268)
T ss_dssp CSSSCEEEEECHHHHHTTCHHH---HHH-HHHHHTCCEEEETTCCGGGCHHHHHHHHHTTCEEECEECTTCCHHHHHHHH
T ss_pred CCCCCEEEEEcccHHHHhhHHH---HHH-HHHHcCCCEEEEcCCCHHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHH
Confidence 789976611010000001111 122 223456666665432100
Q ss_pred -----------cCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHh
Q 020423 239 -----------LNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 301 (326)
Q Consensus 239 -----------~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~ 301 (326)
..|.++... ...+...+.+.++++. .++||+..|||++++++.+++..|||+|.+|+++..
T Consensus 168 ~~~~g~v~~~s~~G~tG~~~-~~~~~~~~~i~~lr~~-~~~pi~vggGI~t~e~~~~~~~agAD~vVVGSai~~ 239 (268)
T 1qop_A 168 SYGRGYTYLLSRSGVTGAEN-RGALPLHHLIEKLKEY-HAAPALQGFGISSPEQVSAAVRAGAAGAISGSAIVK 239 (268)
T ss_dssp HHCCSCEEEESSSSCCCSSS-CC--CCHHHHHHHHHT-TCCCEEEESSCCSHHHHHHHHHTTCSEEEECHHHHH
T ss_pred hhCCCcEEEEecCCcCCCcc-CCCchHHHHHHHHHhc-cCCcEEEECCCCCHHHHHHHHHcCCCEEEEChHHhh
Confidence 001111110 1112235677777665 489999999999999999999999999999999864
|
| >2ox4_A Putative mandelate racemase; enolase, dehydratase, structural genomics, protein structure initiative, PSI, nysgrc; 1.80A {Zymomonas mobilis} | Back alignment and structure |
|---|
Probab=98.60 E-value=7.9e-07 Score=85.26 Aligned_cols=138 Identities=14% Similarity=0.043 Sum_probs=101.2
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecC------CCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC--CCcEEEEeccCCC
Q 020423 135 NLDNLAKATELANAYNYDEINLNC------GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVD 206 (326)
Q Consensus 135 ~~~~f~~aA~~a~~aG~d~Iein~------g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~--~~pv~vK~r~g~~ 206 (326)
++++|.+.|+++.+.||+.++|+. |++... ...|...++++++..+++++||+++ ++++.+....+|
T Consensus 146 ~~e~~~~~a~~~~~~Gf~~vKik~~~~~~~G~~~~s----~~~g~~~~~~~~~~~e~v~avr~avG~d~~l~vDan~~~- 220 (403)
T 2ox4_A 146 RKEEYAEEALKAVAEGYDAVKVDVLAHDRNGSREGV----FLEGPLPSETIKIGVERVEAIRNAVGPDVDIIVENHGHT- 220 (403)
T ss_dssp SHHHHHHHHHHHHHTTCSEEEECCSSSCTTSCCTTC----CCSSSCCHHHHHHHHHHHHHHHHHHCTTSEEEEECTTCS-
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeccccCCccccccC----cccCCCchHHHHHHHHHHHHHHHHhCCCCeEEEECCCCC-
Confidence 899999999999999999999996 443111 1112222457788999999999987 467777665544
Q ss_pred CCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHH
Q 020423 207 DHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAAL 286 (326)
Q Consensus 207 ~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l 286 (326)
+.++..++ .+.+++.|+++|. . ..++.+++.++++++.. ++||++.+.+.+++++.+++
T Consensus 221 ---~~~~ai~~-~~~l~~~~i~~iE----~------------P~~~~d~~~~~~l~~~~-~iPIa~dE~~~~~~~~~~~i 279 (403)
T 2ox4_A 221 ---DLVSAIQF-AKAIEEFNIFFYE----E------------INTPLNPRLLKEAKKKI-DIPLASGERIYSRWGFLPFL 279 (403)
T ss_dssp ---CHHHHHHH-HHHHGGGCEEEEE----C------------CSCTTSTHHHHHHHHTC-CSCEEECTTCCHHHHHHHHH
T ss_pred ---CHHHHHHH-HHHHHhhCCCEEe----C------------CCChhhHHHHHHHHHhC-CCCEEecCCcCCHHHHHHHH
Confidence 34566664 4567889998874 1 11233477777777664 89999999999999999999
Q ss_pred HhC-CChhhhhHH
Q 020423 287 RKG-AHHVMVGRA 298 (326)
Q Consensus 287 ~~G-aD~V~iGRa 298 (326)
+.| +|.|++--.
T Consensus 280 ~~~~~d~v~ik~~ 292 (403)
T 2ox4_A 280 EDRSIDVIQPDLG 292 (403)
T ss_dssp HTTCCSEECCCHH
T ss_pred HcCCCCEEecCcc
Confidence 965 999887543
|
| >4adt_A Pyridoxine biosynthetic enzyme PDX1 homologue, PU; transferase, pyridoxal 5-phosphate biosynthesis; 2.42A {Plasmodium berghei} PDB: 4adu_A* 4ads_A | Back alignment and structure |
|---|
Probab=98.60 E-value=8.3e-07 Score=81.56 Aligned_cols=64 Identities=19% Similarity=0.247 Sum_probs=50.0
Q ss_pred cHHHHHHHHhcCCCceEE--EeCCCCCHHHHHHHHHhCCChhhhhHHHHh--CCchhHHhHHHhhhCCC
Q 020423 254 KYEYYYALLRDFPDLTFT--LNGGINTVDEVNAALRKGAHHVMVGRAAYQ--NPWYTLGHVDTAIYGAP 318 (326)
Q Consensus 254 ~~~~i~~i~~~~~~iPVI--a~GgI~s~~da~~~l~~GaD~V~iGRall~--dP~l~~~~i~~~~~~~~ 318 (326)
.++.+.++.+.. ++||+ +.|||.+++++.++++.|||+|++|++++. ||....+.+...+....
T Consensus 195 ~~~ll~~i~~~~-~iPVivvA~GGI~t~~dv~~~~~~GAdgVlVGsai~~a~dp~~~~~~l~~ai~~~~ 262 (297)
T 4adt_A 195 PIDLILLTRKLK-RLPVVNFAAGGIATPADAAMCMQLGMDGVFVGSGIFESENPQKMASSIVMAVSNFN 262 (297)
T ss_dssp CHHHHHHHHHHT-SCSSEEEEESCCCSHHHHHHHHHTTCSCEEESHHHHTSSCHHHHHHHHHHHHHTTT
T ss_pred CHHHHHHHHHhc-CCCeEEEecCCCCCHHHHHHHHHcCCCEEEEhHHHHcCCCHHHHHHHHHHHHHhhC
Confidence 356677776664 78886 999999999999999999999999999997 55555555655555443
|
| >2hzg_A Mandelate racemase/muconate lactonizing enzyme/EN superfamily; structural genomics, predicted mandelate racemase, PSI; 2.02A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=98.59 E-value=7.1e-07 Score=85.58 Aligned_cols=147 Identities=5% Similarity=-0.023 Sum_probs=109.0
Q ss_pred CcEEEEec-CCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCH-HHHHHHHHHHHhcC--CCcEEEE
Q 020423 125 HPIVLQIG-GSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDP-KFVGEAMSVIAANT--NVPVSVK 200 (326)
Q Consensus 125 ~piivQL~-g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~-~~l~eiv~avr~~~--~~pv~vK 200 (326)
-|+-..+. +.++++|.++|+++.+.||+.|+++. ||. |+ ++ +...+++++||+++ ++++.++
T Consensus 134 vp~~~~~~~~~~~~~~~~~a~~~~~~Gf~~iKik~-spv---------G~----~~~~~~~e~v~avr~a~G~d~~l~vD 199 (401)
T 2hzg_A 134 KRPYASLLFGDTPQETLERARAARRDGFAAVKFGW-GPI---------GR----GTVAADADQIMAAREGLGPDGDLMVD 199 (401)
T ss_dssp BEEEEEEECCSSHHHHHHHHHHHHHTTCSEEEEES-TTT---------TS----SCHHHHHHHHHHHHHHHCSSSEEEEE
T ss_pred eEeeEEcCCCCCHHHHHHHHHHHHHhCCCeEEEcC-CCC---------CC----CHHHHHHHHHHHHHHHhCCCCeEEEE
Confidence 34443443 56899999999999999999999996 442 43 34 78889999999987 5778888
Q ss_pred eccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHh-cCCCceEEEeCCCCCH
Q 020423 201 CRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLR-DFPDLTFTLNGGINTV 279 (326)
Q Consensus 201 ~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~-~~~~iPVIa~GgI~s~ 279 (326)
...+|.. +.++..++ .+.+++.|+++|. .+ .++.+++.++++++ . .++||++.+.+.++
T Consensus 200 an~~~~~--~~~~a~~~-~~~l~~~~i~~iE----qP------------~~~~d~~~~~~l~~~~-~~iPI~~dE~~~~~ 259 (401)
T 2hzg_A 200 VGQIFGE--DVEAAAAR-LPTLDAAGVLWLE----EP------------FDAGALAAHAALAGRG-ARVRIAGGEAAHNF 259 (401)
T ss_dssp CTTTTTT--CHHHHHTT-HHHHHHTTCSEEE----CC------------SCTTCHHHHHHHHTTC-CSSEEEECTTCSSH
T ss_pred CCCCCCC--CHHHHHHH-HHHHHhcCCCEEE----CC------------CCccCHHHHHHHHhhC-CCCCEEecCCcCCH
Confidence 7766620 23455553 4457889999884 11 12345788888776 5 48999999999999
Q ss_pred HHHHHHHHhC-CChhhhhHHHHhCCch
Q 020423 280 DEVNAALRKG-AHHVMVGRAAYQNPWY 305 (326)
Q Consensus 280 ~da~~~l~~G-aD~V~iGRall~dP~l 305 (326)
+++.++++.| +|.|++-...+....-
T Consensus 260 ~~~~~~i~~~~~d~v~ik~~~~GGit~ 286 (401)
T 2hzg_A 260 HMAQHLMDYGRIGFIQIDCGRIGGLGP 286 (401)
T ss_dssp HHHHHHHHHSCCSEEEECHHHHTSHHH
T ss_pred HHHHHHHHCCCCCEEEeCcchhCCHHH
Confidence 9999999965 9999997777666553
|
| >1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A | Back alignment and structure |
|---|
Probab=98.59 E-value=8.5e-08 Score=85.88 Aligned_cols=85 Identities=21% Similarity=0.257 Sum_probs=65.9
Q ss_pred HHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhH
Q 020423 218 IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGR 297 (326)
Q Consensus 218 ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGR 297 (326)
+++.++++|+|+|+++..+....+ .+..++.++++++. .++||+++|||.+++++.++++.|||+|++|+
T Consensus 35 ~a~~~~~~Gad~i~v~d~~~~~~~---------~~~~~~~i~~i~~~-~~ipvi~~ggI~~~~~~~~~~~~Gad~V~lg~ 104 (253)
T 1thf_D 35 LGKFYSEIGIDELVFLDITASVEK---------RKTMLELVEKVAEQ-IDIPFTVGGGIHDFETASELILRGADKVSINT 104 (253)
T ss_dssp HHHHHHHTTCCEEEEEESSCSSSH---------HHHHHHHHHHHHTT-CCSCEEEESSCCSHHHHHHHHHTTCSEEEESH
T ss_pred HHHHHHHcCCCEEEEECCchhhcC---------CcccHHHHHHHHHh-CCCCEEEeCCCCCHHHHHHHHHcCCCEEEECh
Confidence 345667899999999975431110 12346677777765 48999999999999999999999999999999
Q ss_pred HHHhCCchhHHhHHH
Q 020423 298 AAYQNPWYTLGHVDT 312 (326)
Q Consensus 298 all~dP~l~~~~i~~ 312 (326)
+++.+|+++.+.++.
T Consensus 105 ~~l~~p~~~~~~~~~ 119 (253)
T 1thf_D 105 AAVENPSLITQIAQT 119 (253)
T ss_dssp HHHHCTHHHHHHHHH
T ss_pred HHHhChHHHHHHHHH
Confidence 999999965555443
|
| >2qdd_A Mandelate racemase/muconate lactonizing enzyme; enolase, structural genomics, PSI, protein structu initiative, nysgrc; 2.30A {Roseovarius nubinhibens} PDB: 3fvd_B | Back alignment and structure |
|---|
Probab=98.59 E-value=1.2e-06 Score=83.20 Aligned_cols=141 Identities=13% Similarity=0.088 Sum_probs=106.5
Q ss_pred cEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC--CCcEEEEecc
Q 020423 126 PIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRI 203 (326)
Q Consensus 126 piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~--~~pv~vK~r~ 203 (326)
|+...+...+++++.+.|+++.+.||+.++++.|+| ++++..+++++||+++ ++++.++...
T Consensus 136 ~~~~~~~~~~~e~~~~~a~~~~~~Gf~~iKik~g~~----------------~~~~~~e~v~avr~a~g~~~~l~vDan~ 199 (378)
T 2qdd_A 136 PINSSISTGTPDQMLGLIAEAAAQGYRTHSAKIGGS----------------DPAQDIARIEAISAGLPDGHRVTFDVNR 199 (378)
T ss_dssp EBEEEECSCCHHHHHHHHHHHHHHTCCEEEEECCSS----------------CHHHHHHHHHHHHHSCCTTCEEEEECTT
T ss_pred ceEEEecCCCHHHHHHHHHHHHHHhhhheeecCCCC----------------ChHHHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 444444446899999999999999999999998764 3678889999999988 4677777665
Q ss_pred CCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHH
Q 020423 204 GVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVN 283 (326)
Q Consensus 204 g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~ 283 (326)
+|+ .++..+ +.+.++ .|+ +|. . + .+ +++.++++++.. ++||++.+.+.+++++.
T Consensus 200 ~~~----~~~a~~-~~~~l~-~~i-~iE----q-----------P-~~--d~~~~~~l~~~~-~iPI~~dE~~~~~~~~~ 253 (378)
T 2qdd_A 200 AWT----PAIAVE-VLNSVR-ARD-WIE----Q-----------P-CQ--TLDQCAHVARRV-ANPIMLDECLHEFSDHL 253 (378)
T ss_dssp CCC----HHHHHH-HHTSCC-CCC-EEE----C-----------C-SS--SHHHHHHHHTTC-CSCEEECTTCCSHHHHH
T ss_pred CCC----HHHHHH-HHHHhC-CCc-EEE----c-----------C-CC--CHHHHHHHHHhC-CCCEEECCCcCCHHHHH
Confidence 553 445555 345567 888 762 1 0 11 578888887664 89999999999999999
Q ss_pred HHHHhC-CChhhhhHHHHhCCchhHH
Q 020423 284 AALRKG-AHHVMVGRAAYQNPWYTLG 308 (326)
Q Consensus 284 ~~l~~G-aD~V~iGRall~dP~l~~~ 308 (326)
++++.| +|.|++-...+..+.-+.+
T Consensus 254 ~~i~~~~~d~v~ik~~~~GGi~~~~~ 279 (378)
T 2qdd_A 254 AAWSRGACEGVKIKPNRVGGLTRARQ 279 (378)
T ss_dssp HHHHHTCCSEEEECHHHHTSHHHHHH
T ss_pred HHHHhCCCCEEEecccccCCHHHHHH
Confidence 999855 9999998888777664333
|
| >3vk5_A MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {Streptomyces ghanaensis} PDB: 3vka_A* 3vkb_A* 3vkc_A* 3vkd_A* | Back alignment and structure |
|---|
Probab=98.58 E-value=5.1e-07 Score=81.62 Aligned_cols=161 Identities=13% Similarity=0.071 Sum_probs=100.1
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCC------
Q 020423 135 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDH------ 208 (326)
Q Consensus 135 ~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~------ 208 (326)
.+++..+.++.+.+.|.|+|.|- +.-.+ +-.+.+.++++++|+.+++|+.+|.-+++.+.
T Consensus 51 ~~~~~~~~~~~~~~sGtDai~VG-S~~vt-------------~~~~~~~~~v~~ik~~~~lPvil~fPP~~g~~~~i~~~ 116 (286)
T 3vk5_A 51 PVTEAVEKAAELTRLGFAAVLLA-STDYE-------------SFESHMEPYVAAVKAATPLPVVLHFPPRPGAGFPVVRG 116 (286)
T ss_dssp CHHHHHHHHHHHHHTTCSCEEEE-CSCCS-------------SHHHHHHHHHHHHHHHCSSCEEEECCCBTTTBSCCCTT
T ss_pred CcHHHHHHHHHHHhcCCCEEEEc-cCCCC-------------cchHHHHHHHHHHHHhCCCCEEEECCCCCCCccccccC
Confidence 46778888899999999999995 21110 11567889999999988999999877222110
Q ss_pred ------------ccHHHHH----H-HHHHHh----hhCC----ccEEEEecC-Cc-ccCCCCc-----------------
Q 020423 209 ------------DSYNQLC----D-FIYKVS----SLSP----TRHFIIHSR-KA-LLNGISP----------------- 244 (326)
Q Consensus 209 ------------~~~~e~~----~-~ia~~l----e~~G----vd~I~v~~~-~~-~~~g~~~----------------- 244 (326)
.+..=+. . ..+.++ ++.| .-|++|..+ .. ..-+..+
T Consensus 117 aDa~l~psvlNs~n~~~i~g~~~~~~aa~~v~~~~~~~ge~ip~gYL~v~~g~k~V~fv~~~~~~~~e~A~~~aYa~~ga 196 (286)
T 3vk5_A 117 ADALLLPALLGSGDDYFVWKSFLETLAAFPGRIPREEWPELLLTVALTFGEDPRTGDLLGTVPVSTASTEEIDRYLHVAR 196 (286)
T ss_dssp CSEEEEEEETTBSSHHHHTHHHHHHHHHCSTTSCGGGCCEEEEEEEEECSCCHHHHHHHCBCCCCCSSSHHHHHHHHHHH
T ss_pred CCEEEEEEEecCCCcccccCcHHHHHHhHHHHHHHHHhCCcceEEEEEECCCCceeeeeCCCCCCCHHHHHHHHHHHHHH
Confidence 0111011 1 011223 3444 234445433 10 0000000
Q ss_pred --------CCcCCCCCccHHHHHHHHhcCC-CceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhC--CchhHHhH
Q 020423 245 --------AENRTIPPLKYEYYYALLRDFP-DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN--PWYTLGHV 310 (326)
Q Consensus 245 --------~~~~~~~~~~~~~i~~i~~~~~-~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~d--P~l~~~~i 310 (326)
.+... .+.+.+.++++++... ++||++.|||+|++++.++++.|||.|.+|++++.| |+++.+.+
T Consensus 197 d~G~~lV~LD~~~-~~v~~e~V~~I~~~~~~~iPV~vGGGIrs~Eda~~ll~aGAD~VVVGSAav~d~~Pelv~e~a 272 (286)
T 3vk5_A 197 AFGFHMVYLYSRN-EHVPPEVVRHFRKGLGPDQVLFVSGNVRSGRQVTEYLDSGADYVGFAGALEQPDWRSALAEIA 272 (286)
T ss_dssp HTTCSEEEEECSS-SCCCHHHHHHHHHHSCTTCEEEEESSCCSHHHHHHHHHTTCSEEEESGGGSSTTHHHHHHHHH
T ss_pred HcCCCEEEEcCCC-CcCCHHHHHHHHHhcCCCCCEEEEeCCCCHHHHHHHHHcCCCEEEECchhhcCCCHHHHHHHH
Confidence 00001 2334567777776643 799999999999999999999999999999999999 77443433
|
| >1nu5_A Chloromuconate cycloisomerase; enzyme, dehalogenation; 1.95A {Pseudomonas SP} SCOP: c.1.11.2 d.54.1.1 | Back alignment and structure |
|---|
Probab=98.58 E-value=9.6e-07 Score=83.67 Aligned_cols=135 Identities=8% Similarity=0.035 Sum_probs=102.7
Q ss_pred cCCCHHHHHHHHHHHHH-CCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCC--CcEEEEeccCCCCC
Q 020423 132 GGSNLDNLAKATELANA-YNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTN--VPVSVKCRIGVDDH 208 (326)
Q Consensus 132 ~g~~~~~f~~aA~~a~~-aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~--~pv~vK~r~g~~~~ 208 (326)
...+++++.+.|+++.+ .||+.++||.|++ +++...+++++||++++ +++.++...+|+
T Consensus 139 ~~~~~e~~~~~a~~~~~~~Gf~~iKik~g~~----------------~~~~~~e~v~avr~a~g~~~~l~vDan~~~~-- 200 (370)
T 1nu5_A 139 ASGDTARDIDSALEMIETRRHNRFKVKLGAR----------------TPAQDLEHIRSIVKAVGDRASVRVDVNQGWD-- 200 (370)
T ss_dssp CSSCHHHHHHHHHHHHHTTSCSEEEEECSSS----------------CHHHHHHHHHHHHHHHGGGCEEEEECTTCCC--
T ss_pred cCCCHHHHHHHHHHHHHhCCccEEEEecCCC----------------ChHHHHHHHHHHHHhcCCCCEEEEECCCCCC--
Confidence 34578999999999999 9999999998653 25667889999998774 677777665553
Q ss_pred ccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHh
Q 020423 209 DSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRK 288 (326)
Q Consensus 209 ~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~ 288 (326)
.++..++ .+.+++.|+++|. . ..++.+++.++++++.. ++||++.+.+.+++++.++++.
T Consensus 201 --~~~a~~~-~~~l~~~~i~~iE----q------------P~~~~~~~~~~~l~~~~-~ipIa~dE~~~~~~~~~~~i~~ 260 (370)
T 1nu5_A 201 --EQTASIW-IPRLEEAGVELVE----Q------------PVPRANFGALRRLTEQN-GVAILADESLSSLSSAFELARD 260 (370)
T ss_dssp --HHHHHHH-HHHHHHHTCCEEE----C------------CSCTTCHHHHHHHHHHC-SSEEEESTTCCSHHHHHHHHHT
T ss_pred --HHHHHHH-HHHHHhcCcceEe----C------------CCCcccHHHHHHHHHhC-CCCEEeCCCCCCHHHHHHHHHh
Confidence 4455553 4567888999874 1 11234578888887775 8999999999999999999996
Q ss_pred C-CChhhhhHHHHhCCc
Q 020423 289 G-AHHVMVGRAAYQNPW 304 (326)
Q Consensus 289 G-aD~V~iGRall~dP~ 304 (326)
| +|.|++--.-+....
T Consensus 261 ~~~d~v~ik~~~~GGit 277 (370)
T 1nu5_A 261 HAVDAFSLKLCNMGGIA 277 (370)
T ss_dssp TCCSEEEECHHHHTSHH
T ss_pred CCCCEEEEchhhcCCHH
Confidence 5 999998766655544
|
| >2o56_A Putative mandelate racemase; dehydratase, structural genomics, protein structure initiati 2; 2.00A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=98.57 E-value=6.8e-07 Score=85.79 Aligned_cols=135 Identities=13% Similarity=0.064 Sum_probs=99.3
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecC------CCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC--CCcEEEEeccCCC
Q 020423 135 NLDNLAKATELANAYNYDEINLNC------GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVD 206 (326)
Q Consensus 135 ~~~~f~~aA~~a~~aG~d~Iein~------g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~--~~pv~vK~r~g~~ 206 (326)
++++|.+.|+++.+.||+.|+++. |.... ....|...++++++..+++++||+++ ++++.++...+|
T Consensus 152 ~~~~~~~~a~~~~~~Gf~~vKik~~~~~~~G~~~~----s~~~~~~~~~~~~~~~e~v~avR~a~G~d~~l~vDan~~~- 226 (407)
T 2o56_A 152 EPEQYAQAALTAVSEGYDAIKVDTVAMDRHGNWNQ----QNLNGPLTDKILRLGYDRMAAIRDAVGPDVDIIAEMHAFT- 226 (407)
T ss_dssp SHHHHHHHHHHHHHTTCSEEEECCSSBCTTSCBSC----SCCCSSCCHHHHHHHHHHHHHHHHHHCTTSEEEEECTTCS-
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcccccCCcCcccc----CcccCCCchhHHHHHHHHHHHHHHhcCCCCEEEEECCCCC-
Confidence 799999999999999999999986 33211 01112122357788999999999987 466777665444
Q ss_pred CCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHH
Q 020423 207 DHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAAL 286 (326)
Q Consensus 207 ~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l 286 (326)
+.++..++ .+.+++.|+++|. . ..++.+++.++++++.. ++||++.+.+.+++++.+++
T Consensus 227 ---~~~~a~~~-~~~l~~~~i~~iE----~------------P~~~~~~~~~~~l~~~~-~iPIa~dE~~~~~~~~~~~i 285 (407)
T 2o56_A 227 ---DTTSAIQF-GRMIEELGIFYYE----E------------PVMPLNPAQMKQVADKV-NIPLAAGERIYWRWGYRPFL 285 (407)
T ss_dssp ---CHHHHHHH-HHHHGGGCCSCEE----C------------SSCSSSHHHHHHHHHHC-CSCEEECTTCCHHHHHHHHH
T ss_pred ---CHHHHHHH-HHHHHhcCCCEEe----C------------CCChhhHHHHHHHHHhC-CCCEEeCCCcCCHHHHHHHH
Confidence 34566664 4567889999874 1 11234577788887775 89999999999999999999
Q ss_pred HhC-CChhhh
Q 020423 287 RKG-AHHVMV 295 (326)
Q Consensus 287 ~~G-aD~V~i 295 (326)
+.| +|.|++
T Consensus 286 ~~~~~d~v~i 295 (407)
T 2o56_A 286 ENGSLSVIQP 295 (407)
T ss_dssp HTTCCSEECC
T ss_pred HcCCCCEEec
Confidence 966 888876
|
| >3oa3_A Aldolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, pathogenic fungus; 1.60A {Coccidioides immitis} | Back alignment and structure |
|---|
Probab=98.56 E-value=1.4e-06 Score=79.25 Aligned_cols=145 Identities=12% Similarity=0.078 Sum_probs=100.8
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHH
Q 020423 135 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQL 214 (326)
Q Consensus 135 ~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~ 214 (326)
..+.-..-++.+.+.|+|.|++.+ + +|.-...+.+.+.+-+.+|++.++.+ .+|+-+-.. ..+.+++
T Consensus 124 ~~~~Kv~Ea~~Ai~~GAdEIDmVI-----N------ig~lk~g~~~~v~~eI~~V~~a~~~~-~lKVIlEt~-~Lt~eei 190 (288)
T 3oa3_A 124 STDQKVSEAKRAMQNGASELDMVM-----N------YPWLSEKRYTDVFQDIRAVRLAAKDA-ILKVILETS-QLTADEI 190 (288)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEEEC-----C------HHHHHTTCHHHHHHHHHHHHHHTTTS-EEEEECCGG-GCCHHHH
T ss_pred cHHHHHHHHHHHHHcCCCEEEEEe-----e------hhhhcCCcHHHHHHHHHHHHHHhcCC-CceEEEECC-CCCHHHH
Confidence 445556677888899999999764 1 35444467788999999999988766 377655211 1233444
Q ss_pred HHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhc-CCCceEEEeCCCCCHHHHHHHHHhCCC--
Q 020423 215 CDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRD-FPDLTFTLNGGINTVDEVNAALRKGAH-- 291 (326)
Q Consensus 215 ~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~-~~~iPVIa~GgI~s~~da~~~l~~GaD-- 291 (326)
.. ..++..++|+|+|-.+.+... .|. ...+...+++.++. ..+++|.++|||++.+++.++++.||+
T Consensus 191 ~~-A~~ia~eaGADfVKTSTGf~~-~GA--------T~edv~lmr~~v~~~g~~v~VKAAGGIrt~edAl~mi~aGA~Ri 260 (288)
T 3oa3_A 191 IA-GCVLSSLAGADYVKTSTGFNG-PGA--------SIENVSLMSAVCDSLQSETRVKASGGIRTIEDCVKMVRAGAERL 260 (288)
T ss_dssp HH-HHHHHHHTTCSEEECCCSSSS-CCC--------CHHHHHHHHHHHHHSSSCCEEEEESSCCSHHHHHHHHHTTCSEE
T ss_pred HH-HHHHHHHcCCCEEEcCCCCCC-CCC--------CHHHHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHcCCcee
Confidence 43 456667899999987744320 111 12235566666653 247999999999999999999999999
Q ss_pred hhhhhHHHHhC
Q 020423 292 HVMVGRAAYQN 302 (326)
Q Consensus 292 ~V~iGRall~d 302 (326)
+...|+.++..
T Consensus 261 GtS~g~~I~~~ 271 (288)
T 3oa3_A 261 GASAGVKIVNE 271 (288)
T ss_dssp EESCHHHHHHH
T ss_pred ehhhHHHHHHH
Confidence 88888877643
|
| >2ps2_A Putative mandelate racemase/muconate lactonizing enzyme; structural genomics, NYSGXRC, target 9440A, enolase superfamily, PSI-2; 1.80A {Aspergillus oryzae RIB40} | Back alignment and structure |
|---|
Probab=98.54 E-value=1.7e-06 Score=81.97 Aligned_cols=138 Identities=10% Similarity=0.044 Sum_probs=104.6
Q ss_pred CcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC--CCcEEEEec
Q 020423 125 HPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCR 202 (326)
Q Consensus 125 ~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~--~~pv~vK~r 202 (326)
-|+...+.+.+++++.+.|+++.+.||+.++||.|. ++++..+++++||+++ ++++.++..
T Consensus 136 vp~~~~~~~~~~~~~~~~a~~~~~~Gf~~iKik~g~-----------------~~~~~~e~v~avr~a~g~~~~l~vDan 198 (371)
T 2ps2_A 136 LPLISSIYVGEPEDMRARVAKYRAKGYKGQSVKISG-----------------EPVTDAKRITAALANQQPDEFFIVDAN 198 (371)
T ss_dssp EEBEEEECSCCHHHHHHHHHHHHTTTCCEEEEECCS-----------------CHHHHHHHHHHHTTTCCTTCEEEEECT
T ss_pred eEEEEEeCCCCHHHHHHHHHHHHHhChheEEeecCC-----------------CHHHHHHHHHHHHHhcCCCCEEEEECC
Confidence 345555556789999999999999999999998752 3778889999999988 467777665
Q ss_pred cCCCCCccHHHHHHHHHHHh-hhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHH
Q 020423 203 IGVDDHDSYNQLCDFIYKVS-SLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDE 281 (326)
Q Consensus 203 ~g~~~~~~~~e~~~~ia~~l-e~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~d 281 (326)
.+| +.++..++ .+.+ ++.|+ +|. .+ .+ +++.++++++.. ++||++.+.+.++++
T Consensus 199 ~~~----~~~~a~~~-~~~l~~~~~i-~iE----~P------------~~--~~~~~~~l~~~~-~iPI~~dE~~~~~~~ 253 (371)
T 2ps2_A 199 GKL----SVETALRL-LRLLPHGLDF-ALE----AP------------CA--TWRECISLRRKT-DIPIIYDELATNEMS 253 (371)
T ss_dssp TBC----CHHHHHHH-HHHSCTTCCC-EEE----CC------------BS--SHHHHHHHHTTC-CSCEEESTTCCSHHH
T ss_pred CCc----CHHHHHHH-HHHHHhhcCC-cCc----CC------------cC--CHHHHHHHHhhC-CCCEEeCCCcCCHHH
Confidence 555 34555553 4566 88898 763 10 11 477777777664 899999999999999
Q ss_pred HHHHHHhC-CChhhhhHHHHhCCc
Q 020423 282 VNAALRKG-AHHVMVGRAAYQNPW 304 (326)
Q Consensus 282 a~~~l~~G-aD~V~iGRall~dP~ 304 (326)
+.++++.| +|.|++--.-+....
T Consensus 254 ~~~~i~~~~~d~v~ik~~~~GGit 277 (371)
T 2ps2_A 254 IVKILADDAAEGIDLKISKAGGLT 277 (371)
T ss_dssp HHHHHHHTCCSEEEEEHHHHTSHH
T ss_pred HHHHHHhCCCCEEEechhhcCCHH
Confidence 99999965 999998766655544
|
| >2pp0_A L-talarate/galactarate dehydratase; enolase superfamily, LYA; 2.20A {Salmonella typhimurium} PDB: 2pp1_A* 2pp3_A* | Back alignment and structure |
|---|
Probab=98.53 E-value=1.3e-06 Score=83.73 Aligned_cols=127 Identities=10% Similarity=0.045 Sum_probs=98.8
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC--CCcEEEEeccCCCCCccHH
Q 020423 135 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYN 212 (326)
Q Consensus 135 ~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~--~~pv~vK~r~g~~~~~~~~ 212 (326)
++++|.+.|+++.+.||+.++++.|. .++++..+++++||+++ ++++.+....+| +.+
T Consensus 175 ~~e~~~~~a~~~~~~Gf~~vKik~g~----------------~~~~~d~e~v~avR~avG~d~~l~vDan~~~----~~~ 234 (398)
T 2pp0_A 175 PLDQVLKNVVISRENGIGGIKLKVGQ----------------PNCAEDIRRLTAVREALGDEFPLMVDANQQW----DRE 234 (398)
T ss_dssp CHHHHHHHHHHHHHTTCSCEEEECCC----------------SCHHHHHHHHHHHHHHHCSSSCEEEECTTCS----CHH
T ss_pred CHHHHHHHHHHHHHhCCCeEEEecCC----------------CCHHHHHHHHHHHHHHcCCCCeEEEECCCCC----CHH
Confidence 79999999999999999999998652 34788899999999987 577877766555 345
Q ss_pred HHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhC-CC
Q 020423 213 QLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKG-AH 291 (326)
Q Consensus 213 e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~G-aD 291 (326)
+..++ .+.+++.|+++|. . ..++.+++.++++.+.. ++||++.+.+.+++++.++++.| +|
T Consensus 235 ~ai~~-~~~l~~~~i~~iE----q------------P~~~~d~~~~~~l~~~~-~iPIa~dE~~~~~~~~~~~i~~~~~d 296 (398)
T 2pp0_A 235 TAIRM-GRKMEQFNLIWIE----E------------PLDAYDIEGHAQLAAAL-DTPIATGEMLTSFREHEQLILGNASD 296 (398)
T ss_dssp HHHHH-HHHHGGGTCSCEE----C------------CSCTTCHHHHHHHHHHC-SSCEEECTTCCSHHHHHHHHHTTCCS
T ss_pred HHHHH-HHHHHHcCCceee----C------------CCChhhHHHHHHHHhhC-CCCEEecCCcCCHHHHHHHHHcCCCC
Confidence 55664 4457889999874 1 11234577777887765 89999999999999999999966 99
Q ss_pred hhhhhHHH
Q 020423 292 HVMVGRAA 299 (326)
Q Consensus 292 ~V~iGRal 299 (326)
.|++=-.-
T Consensus 297 ~v~ik~~~ 304 (398)
T 2pp0_A 297 FVQPDAPR 304 (398)
T ss_dssp EECCCHHH
T ss_pred EEEeCccc
Confidence 99875433
|
| >2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A* | Back alignment and structure |
|---|
Probab=98.52 E-value=6.6e-07 Score=78.03 Aligned_cols=139 Identities=13% Similarity=0.214 Sum_probs=88.9
Q ss_pred CCCcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEec
Q 020423 123 EQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCR 202 (326)
Q Consensus 123 ~~~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r 202 (326)
+..|++..|.+.+.+++.+.++.+.+.|++.|++...+|.. .+.++.+++..+.++.+...
T Consensus 5 ~~~~i~~~i~~~d~~~~~~~~~~~~~~G~~~i~l~~~~~~~-------------------~~~i~~i~~~~~~~l~vg~g 65 (212)
T 2v82_A 5 TKLPLIAILRGITPDEALAHVGAVIDAGFDAVEIPLNSPQW-------------------EQSIPAIVDAYGDKALIGAG 65 (212)
T ss_dssp SSSCEEEECTTCCHHHHHHHHHHHHHHTCCEEEEETTSTTH-------------------HHHHHHHHHHHTTTSEEEEE
T ss_pred CCCCEEEEEeCCCHHHHHHHHHHHHHCCCCEEEEeCCChhH-------------------HHHHHHHHHhCCCCeEEEec
Confidence 46789999999999999999999999999999997554321 12233333333445444221
Q ss_pred cCCCCC--------------------------------------ccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCc
Q 020423 203 IGVDDH--------------------------------------DSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISP 244 (326)
Q Consensus 203 ~g~~~~--------------------------------------~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~ 244 (326)
. ..+. .+.++. .+ ..+.|+|+|.+...
T Consensus 66 ~-~~~~~~i~~a~~~Gad~V~~~~~~~~~~~~~~~~g~~~~~g~~t~~e~----~~-a~~~G~d~v~v~~t--------- 130 (212)
T 2v82_A 66 T-VLKPEQVDALARMGCQLIVTPNIHSEVIRRAVGYGMTVCPGCATATEA----FT-ALEAGAQALKIFPS--------- 130 (212)
T ss_dssp C-CCSHHHHHHHHHTTCCEEECSSCCHHHHHHHHHTTCEEECEECSHHHH----HH-HHHTTCSEEEETTH---------
T ss_pred c-ccCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHcCCCEEeecCCHHHH----HH-HHHCCCCEEEEecC---------
Confidence 1 0000 011111 00 11244444443110
Q ss_pred CCcCCCCCccHHHHHHHHhcCC-CceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhC
Q 020423 245 AENRTIPPLKYEYYYALLRDFP-DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN 302 (326)
Q Consensus 245 ~~~~~~~~~~~~~i~~i~~~~~-~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~d 302 (326)
.+..++.++++.+... ++||++.|||+ ++++.++++.|||+|.+|++++..
T Consensus 131 ------~~~g~~~~~~l~~~~~~~ipvia~GGI~-~~~i~~~~~~Ga~gv~vGsai~~~ 182 (212)
T 2v82_A 131 ------SAFGPQYIKALKAVLPSDIAVFAVGGVT-PENLAQWIDAGCAGAGLGSDLYRA 182 (212)
T ss_dssp ------HHHCHHHHHHHHTTSCTTCEEEEESSCC-TTTHHHHHHHTCSEEEECTTTCCT
T ss_pred ------CCCCHHHHHHHHHhccCCCeEEEeCCCC-HHHHHHHHHcCCCEEEEChHHhCC
Confidence 0123567777776654 59999999997 999999999999999999999875
|
| >3stp_A Galactonate dehydratase, putative; PSI biology, structural genomics, NEW YORK structural genomi research consortium; 1.88A {Labrenzia aggregata iam 12614} PDB: 3sqs_A 3ssz_A | Back alignment and structure |
|---|
Probab=98.52 E-value=1.5e-06 Score=83.59 Aligned_cols=144 Identities=9% Similarity=0.063 Sum_probs=107.8
Q ss_pred cEEEE-ecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC--CCcEEEEec
Q 020423 126 PIVLQ-IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCR 202 (326)
Q Consensus 126 piivQ-L~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~--~~pv~vK~r 202 (326)
|+-.. +...+++++++.|+++.+.||+.+.+++++... + |+ ++++...+.+++||+++ ++++.+...
T Consensus 169 ~~y~s~~~~~~~e~~~~~a~~~~~~Gf~~iKik~g~gp~-----d--g~---~~~~~die~v~avReavG~d~~L~vDaN 238 (412)
T 3stp_A 169 PVYYSKLYAGSIEAMQKEAEEAMKGGYKAFKSRFGYGPK-----D--GM---PGMRENLKRVEAVREVIGYDNDLMLECY 238 (412)
T ss_dssp EEEEECCCSCCHHHHHHHHHHHHTTTCSEEEEECCCCGG-----G--HH---HHHHHHHHHHHHHHHHHCSSSEEEEECT
T ss_pred EEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEecccCcc-----c--cc---chHHHHHHHHHHHHHHcCCCCeEEEECC
Confidence 44444 334689999999999999999999999876421 1 32 46788899999999987 567777766
Q ss_pred cCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHH
Q 020423 203 IGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEV 282 (326)
Q Consensus 203 ~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da 282 (326)
.+|+ .++..+ +++.+++.|+++|. . ..++.+++.++++++. .++||++.+.+.+++++
T Consensus 239 ~~~~----~~~Ai~-~~~~Le~~~i~~iE----e------------P~~~~d~~~~~~l~~~-~~iPIa~dE~~~~~~~~ 296 (412)
T 3stp_A 239 MGWN----LDYAKR-MLPKLAPYEPRWLE----E------------PVIADDVAGYAELNAM-NIVPISGGEHEFSVIGC 296 (412)
T ss_dssp TCSC----HHHHHH-HHHHHGGGCCSEEE----C------------CSCTTCHHHHHHHHHT-CSSCEEECTTCCSHHHH
T ss_pred CCCC----HHHHHH-HHHHHHhcCCCEEE----C------------CCCcccHHHHHHHHhC-CCCCEEeCCCCCCHHHH
Confidence 6653 445555 45567889999985 1 1123357778888776 48999999999999999
Q ss_pred HHHHHhC-CChhhhhHHHHh
Q 020423 283 NAALRKG-AHHVMVGRAAYQ 301 (326)
Q Consensus 283 ~~~l~~G-aD~V~iGRall~ 301 (326)
.++++.| +|.|++--.-..
T Consensus 297 ~~li~~~a~D~v~ik~~~~G 316 (412)
T 3stp_A 297 AELINRKAVSVLQYDTNRVG 316 (412)
T ss_dssp HHHHHTTCCSEECCCHHHHT
T ss_pred HHHHHcCCCCEEecChhhcC
Confidence 9999965 999988655543
|
| >1tkk_A Similar to chloromuconate cycloisomerase; epimerase, enolase super family,; 2.10A {Bacillus subtilis} SCOP: c.1.11.2 d.54.1.1 PDB: 1jpm_A | Back alignment and structure |
|---|
Probab=98.51 E-value=2.1e-06 Score=81.21 Aligned_cols=139 Identities=8% Similarity=-0.013 Sum_probs=105.2
Q ss_pred EEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC--CCcEEEEeccCC
Q 020423 128 VLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGV 205 (326)
Q Consensus 128 ivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~--~~pv~vK~r~g~ 205 (326)
-..+...+++++.+.|+++.+.||+.+.++.|++ +++...+.+++||+++ ++++.++...+|
T Consensus 133 ~~~~~~~~~~~~~~~a~~~~~~Gf~~iKik~g~~----------------~~~~d~~~v~avr~a~g~~~~l~vDan~~~ 196 (366)
T 1tkk_A 133 DYTVSVNSPEEMAADAENYLKQGFQTLKIKVGKD----------------DIATDIARIQEIRKRVGSAVKLRLDANQGW 196 (366)
T ss_dssp CEEECSCCHHHHHHHHHHHHHHTCCEEEEECCSS----------------CHHHHHHHHHHHHHHHCSSSEEEEECTTCS
T ss_pred eEEecCCCHHHHHHHHHHHHHcCCCeEEEEeCCC----------------CHHHHHHHHHHHHHHhCCCCeEEEECCCCC
Confidence 3455556899999999999999999999987641 3677889999999987 567777766555
Q ss_pred CCCccHHHHHHHHHHHhhh--CCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHH
Q 020423 206 DDHDSYNQLCDFIYKVSSL--SPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVN 283 (326)
Q Consensus 206 ~~~~~~~e~~~~ia~~le~--~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~ 283 (326)
+ .++..++ .+.+++ .|+++|. . ..++.+++.++++.+.. ++||++.+.+.+++++.
T Consensus 197 ~----~~~a~~~-~~~l~~~~~~i~~iE----q------------P~~~~d~~~~~~l~~~~-~ipIa~dE~~~~~~~~~ 254 (366)
T 1tkk_A 197 R----PKEAVTA-IRKMEDAGLGIELVE----Q------------PVHKDDLAGLKKVTDAT-DTPIMADESVFTPRQAF 254 (366)
T ss_dssp C----HHHHHHH-HHHHHHTTCCEEEEE----C------------CSCTTCHHHHHHHHHHC-SSCEEECTTCCSHHHHH
T ss_pred C----HHHHHHH-HHHHhhcCCCceEEE----C------------CCCcccHHHHHHHHhhC-CCCEEEcCCCCCHHHHH
Confidence 3 4455553 455788 8888884 1 11334578788887765 89999999999999999
Q ss_pred HHHHhC-CChhhhhHHHHhCCc
Q 020423 284 AALRKG-AHHVMVGRAAYQNPW 304 (326)
Q Consensus 284 ~~l~~G-aD~V~iGRall~dP~ 304 (326)
++++.+ +|.|++--.-.....
T Consensus 255 ~~i~~~~~d~v~ik~~~~GGit 276 (366)
T 1tkk_A 255 EVLQTRSADLINIKLMKAGGIS 276 (366)
T ss_dssp HHHHHTCCSEEEECHHHHTSHH
T ss_pred HHHHhCCCCEEEeehhhhcCHH
Confidence 999855 999998766655544
|
| >3vzx_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; 1.54A {Bacillus subtilis} PDB: 3vzy_A* 3vzz_A* 3w00_A* 1viz_A | Back alignment and structure |
|---|
Probab=98.50 E-value=2.6e-06 Score=75.18 Aligned_cols=57 Identities=21% Similarity=0.213 Sum_probs=48.5
Q ss_pred cHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhCCchhHHhHH
Q 020423 254 KYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVD 311 (326)
Q Consensus 254 ~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~dP~l~~~~i~ 311 (326)
+.+.++++++...++||+..|||+|++++.+++ .|||.|.+|+++..||.++.+.++
T Consensus 167 ~~~~i~~i~~~~~~~Pv~vGGGI~t~e~a~~~~-~gAD~VVVGSa~v~~p~~~~~~v~ 223 (228)
T 3vzx_A 167 DIEAVKKTKAVLETSTLFYGGGIKDAETAKQYA-EHADVIVVGNAVYEDFDRALKTVA 223 (228)
T ss_dssp CHHHHHHHHHHCSSSEEEEESSCCSHHHHHHHH-TTCSEEEECTHHHHCHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHH-hCCCEEEEChHHhcCHHHHHHHHH
Confidence 578888887664379999999999999999998 699999999999999996554444
|
| >3ozy_A Putative mandelate racemase; beta-alpha barrel, enolase superfamily member, M-xylarate, U function; HET: DXL; 1.30A {Bordetella bronchiseptica} PDB: 3ozm_A* 3h12_A 3op2_A* | Back alignment and structure |
|---|
Probab=98.50 E-value=3.7e-06 Score=80.29 Aligned_cols=137 Identities=9% Similarity=0.057 Sum_probs=104.5
Q ss_pred CcEEEEe-c-CCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC--CCcEEEE
Q 020423 125 HPIVLQI-G-GSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVK 200 (326)
Q Consensus 125 ~piivQL-~-g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~--~~pv~vK 200 (326)
-|+-..+ . ..+++++++.++.+.+.||+.+.++.|+ +++.-.+++++||+++ +.++.++
T Consensus 139 v~~y~~~~~~~~~~e~~~~~a~~~~~~G~~~iKiKvG~-----------------~~~~d~~~v~avR~a~g~d~~l~vD 201 (389)
T 3ozy_A 139 VRAYASSIYWDLTPDQAADELAGWVEQGFTAAKLKVGR-----------------APRKDAANLRAMRQRVGADVEILVD 201 (389)
T ss_dssp EEEEEEEECSSCCHHHHHHHHHHHHHTTCSEEEEECCS-----------------CHHHHHHHHHHHHHHHCTTSEEEEE
T ss_pred eeeEEecCCCCCCHHHHHHHHHHHHHCCCCEEeeccCC-----------------CHHHHHHHHHHHHHHcCCCceEEEE
Confidence 4566666 3 5789999999999999999999998764 3667788999999987 5678887
Q ss_pred eccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHH-hcCCCceEEEeCCCCCH
Q 020423 201 CRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALL-RDFPDLTFTLNGGINTV 279 (326)
Q Consensus 201 ~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~-~~~~~iPVIa~GgI~s~ 279 (326)
...+|+ .++..+ +++.+++.|+++|. . ..++.+++.+++++ +. .++||++.+.+.++
T Consensus 202 an~~~~----~~~A~~-~~~~l~~~~i~~iE----q------------P~~~~d~~~~~~l~~~~-~~iPIa~dE~i~~~ 259 (389)
T 3ozy_A 202 ANQSLG----RHDALA-MLRILDEAGCYWFE----E------------PLSIDDIEGHRILRAQG-TPVRIATGENLYTR 259 (389)
T ss_dssp CTTCCC----HHHHHH-HHHHHHHTTCSEEE----S------------CSCTTCHHHHHHHHTTC-CSSEEEECTTCCHH
T ss_pred CCCCcC----HHHHHH-HHHHHHhcCCCEEE----C------------CCCcccHHHHHHHHhcC-CCCCEEeCCCCCCH
Confidence 776664 344444 45567889999985 1 11233577777877 55 48999999999999
Q ss_pred HHHHHHHHhC-CChhhhhHHHH
Q 020423 280 DEVNAALRKG-AHHVMVGRAAY 300 (326)
Q Consensus 280 ~da~~~l~~G-aD~V~iGRall 300 (326)
+++.++++.| +|.|++--.-.
T Consensus 260 ~~~~~~i~~~~~d~v~ik~~~~ 281 (389)
T 3ozy_A 260 NAFNDYIRNDAIDVLQADASRA 281 (389)
T ss_dssp HHHHHHHHTTCCSEECCCTTTS
T ss_pred HHHHHHHHcCCCCEEEeCcccc
Confidence 9999999955 99998854443
|
| >1xg4_A Probable methylisocitrate lyase; 2-methylisocitrate lyase/inhibitor complex, isocitrate lyase superfamily; HET: ICT; 1.60A {Escherichia coli} PDB: 1xg3_A* 1mum_A 1oqf_A 1ujq_A 1o5q_A | Back alignment and structure |
|---|
Probab=98.49 E-value=7.2e-07 Score=81.88 Aligned_cols=201 Identities=11% Similarity=0.049 Sum_probs=127.6
Q ss_pred CCChHHHHHHHHHcCCCcEEEecce--eecccccccc---chhhhhh-----cCCCCCcEEEEe---cCCCHHHHHHHHH
Q 020423 78 DWTDNHYRTLARLISKHAWLYTEML--AAETIIYQQG---NLDRFLA-----FSPEQHPIVLQI---GGSNLDNLAKATE 144 (326)
Q Consensus 78 ~~s~~~~r~~~~~~Gg~gli~te~~--~~~~~~~~~~---~~~~~~~-----~~~~~~piivQL---~g~~~~~f~~aA~ 144 (326)
+.-|.....++.+.| +..+++... ....+.+.+. ..+..+. ....+.|+++.+ +|.++++..+.++
T Consensus 23 ~a~D~~sA~~~~~aG-~~ai~vs~~~~a~~~~G~pD~~~vt~~em~~~~~~I~~~~~~PviaD~d~Gyg~~~~~~~~~v~ 101 (295)
T 1xg4_A 23 GTINANHALLAQRAG-YQAIYLSGGGVAAGSLGLPDLGISTLDDVLTDIRRITDVCSLPLLVDADIGFGSSAFNVARTVK 101 (295)
T ss_dssp ECSSHHHHHHHHHTT-CSCEEECHHHHHHTTTCCCSSSCSCHHHHHHHHHHHHHHCCSCEEEECTTCSSSSHHHHHHHHH
T ss_pred cCcCHHHHHHHHHcC-CCEEEECchHhhhhhcCCCCCCCCCHHHHHHHHHHHHhhCCCCEEecCCcccCCCHHHHHHHHH
Confidence 445666666666665 766666543 2112222221 1122211 122457999999 6778999999999
Q ss_pred HHHHCCCCEEEecCCCCCCcccCCCCcccc-ccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHHHHhh
Q 020423 145 LANAYNYDEINLNCGCPSPKVAGHGCFGVS-LMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSS 223 (326)
Q Consensus 145 ~a~~aG~d~Iein~g~P~~~~~r~d~yGgs-l~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia~~le 223 (326)
++.++|+++|.|.-++.. .+.++.||. |....+.+..|..++....+.++.|.-|........+++.++. ++.++
T Consensus 102 ~l~~aGa~gv~iEd~~~~---k~cgH~~gk~L~p~~~~~~~I~Aa~~a~~~~~~~i~aRtda~~~~gl~~ai~r-a~ay~ 177 (295)
T 1xg4_A 102 SMIKAGAAGLHIEDQVGA---KRSGHRPNKAIVSKEEMVDRIRAAVDAKTDPDFVIMARTDALAVEGLDAAIER-AQAYV 177 (295)
T ss_dssp HHHHHTCSEEEEECBCSS---CCCTTSSSCCBCCHHHHHHHHHHHHHHCSSTTSEEEEEECCHHHHCHHHHHHH-HHHHH
T ss_pred HHHHcCCeEEEECCCCCC---cccCCCCCCccCCHHHHHHHHHHHHHhccCCCcEEEEecHHhhhcCHHHHHHH-HHHHH
Confidence 999999999999988732 334555655 5555555555555554444667777767642111234566653 45678
Q ss_pred hCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCC--CCH-HHHHHHHHhCCChhhhhHHHH
Q 020423 224 LSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI--NTV-DEVNAALRKGAHHVMVGRAAY 300 (326)
Q Consensus 224 ~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI--~s~-~da~~~l~~GaD~V~iGRall 300 (326)
++|+|.|.+++.. .++.++++.+.. ++|+++|.-. .++ -...++-+.|++.|++|.+++
T Consensus 178 eAGAd~i~~e~~~-----------------~~~~~~~i~~~~-~iP~~~N~~~~g~~p~~~~~eL~~~G~~~v~~~~~~~ 239 (295)
T 1xg4_A 178 EAGAEMLFPEAIT-----------------ELAMYRQFADAV-QVPILANITEFGATPLFTTDELRSAHVAMALYPLSAF 239 (295)
T ss_dssp HTTCSEEEETTCC-----------------SHHHHHHHHHHH-CSCBEEECCSSSSSCCCCHHHHHHTTCSEEEESSHHH
T ss_pred HcCCCEEEEeCCC-----------------CHHHHHHHHHHc-CCCEEEEecccCCCCCCCHHHHHHcCCCEEEEChHHH
Confidence 8999999998642 256677777765 8999887654 222 235566679999999998877
Q ss_pred h
Q 020423 301 Q 301 (326)
Q Consensus 301 ~ 301 (326)
.
T Consensus 240 ~ 240 (295)
T 1xg4_A 240 R 240 (295)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1 | Back alignment and structure |
|---|
Probab=98.49 E-value=1.8e-07 Score=83.72 Aligned_cols=83 Identities=14% Similarity=0.160 Sum_probs=63.7
Q ss_pred HHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhH
Q 020423 218 IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGR 297 (326)
Q Consensus 218 ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGR 297 (326)
+++.++++|+|+|+++..... +. .....++.++++++. .++||++.|||.+.++++++++.|||+|.+|+
T Consensus 36 ~a~~~~~~Gad~i~v~d~~~~--~~-------~~~~~~~~i~~i~~~-~~iPvi~~Ggi~~~~~~~~~~~~Gad~V~lg~ 105 (252)
T 1ka9_F 36 AARAYDEAGADELVFLDISAT--HE-------ERAILLDVVARVAER-VFIPLTVGGGVRSLEDARKLLLSGADKVSVNS 105 (252)
T ss_dssp HHHHHHHHTCSCEEEEECCSS--TT-------CHHHHHHHHHHHHTT-CCSCEEEESSCCSHHHHHHHHHHTCSEEEECH
T ss_pred HHHHHHHcCCCEEEEEcCCcc--cc-------CccccHHHHHHHHHh-CCCCEEEECCcCCHHHHHHHHHcCCCEEEECh
Confidence 345567899999999865421 10 012245677777766 49999999999999999999999999999999
Q ss_pred HHHhCCchhHHhH
Q 020423 298 AAYQNPWYTLGHV 310 (326)
Q Consensus 298 all~dP~l~~~~i 310 (326)
+++.+|+++.+..
T Consensus 106 ~~l~~p~~~~~~~ 118 (252)
T 1ka9_F 106 AAVRRPELIRELA 118 (252)
T ss_dssp HHHHCTHHHHHHH
T ss_pred HHHhCcHHHHHHH
Confidence 9999999544433
|
| >2qde_A Mandelate racemase/muconate lactonizing enzyme FA protein; PSI-II, NYSGXRC, enolase, structural genomics, protei structure initiative, PSI-2; 1.93A {Azoarcus SP} | Back alignment and structure |
|---|
Probab=98.49 E-value=1.6e-06 Score=83.05 Aligned_cols=127 Identities=11% Similarity=0.111 Sum_probs=97.8
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC--CCcEEEEeccCCCCCccH
Q 020423 134 SNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSY 211 (326)
Q Consensus 134 ~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~--~~pv~vK~r~g~~~~~~~ 211 (326)
.++++|.+.|+++.+.||+.++++.|. ++++..+++++||+++ ++++.+....+| +.
T Consensus 144 ~~~e~~~~~a~~~~~~Gf~~vKik~g~-----------------~~~~~~e~v~avR~a~g~d~~l~vDan~~~----~~ 202 (397)
T 2qde_A 144 GEPEAVAEEALAVLREGFHFVKLKAGG-----------------PLKADIAMVAEVRRAVGDDVDLFIDINGAW----TY 202 (397)
T ss_dssp SCHHHHHHHHHHHHHHTCSCEEEECCS-----------------CHHHHHHHHHHHHHHHCTTSCEEEECTTCC----CH
T ss_pred CCHHHHHHHHHHHHHhhhhheeecccC-----------------CHHHHHHHHHHHHHhhCCCCEEEEECCCCC----CH
Confidence 579999999999999999999998651 3677889999999987 577777765555 34
Q ss_pred HHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhC-C
Q 020423 212 NQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKG-A 290 (326)
Q Consensus 212 ~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~G-a 290 (326)
++..++ .+.+++.|+++|. . ..++.+++.++++.+.. ++||++.+.+.+++++.++++.| +
T Consensus 203 ~~a~~~-~~~l~~~~i~~iE----q------------P~~~~~~~~~~~l~~~~-~iPIa~dE~~~~~~~~~~~i~~~~~ 264 (397)
T 2qde_A 203 DQALTT-IRALEKYNLSKIE----Q------------PLPAWDLDGMARLRGKV-ATPIYADESAQELHDLLAIINKGAA 264 (397)
T ss_dssp HHHHHH-HHHHGGGCCSCEE----C------------CSCTTCHHHHHHHHTTC-SSCEEESTTCCSHHHHHHHHHHTCC
T ss_pred HHHHHH-HHHHHhCCCCEEE----C------------CCChhhHHHHHHHHhhC-CCCEEEeCCcCCHHHHHHHHHcCCC
Confidence 555553 5567889999874 1 11234577777877664 89999999999999999999865 9
Q ss_pred ChhhhhHHH
Q 020423 291 HHVMVGRAA 299 (326)
Q Consensus 291 D~V~iGRal 299 (326)
|.|++=-.-
T Consensus 265 d~v~ik~~~ 273 (397)
T 2qde_A 265 DGLMIKTQK 273 (397)
T ss_dssp SEEEECHHH
T ss_pred CEEEEeccc
Confidence 998874443
|
| >3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4 | Back alignment and structure |
|---|
Probab=98.49 E-value=8.3e-07 Score=80.58 Aligned_cols=169 Identities=14% Similarity=0.088 Sum_probs=96.3
Q ss_pred EEEEecC--CCHHHHHHHHHHHHHCCCCEEEecCC--CCCCc---cc----CCCCccccccCCHHHHHHHHHHHHhc-CC
Q 020423 127 IVLQIGG--SNLDNLAKATELANAYNYDEINLNCG--CPSPK---VA----GHGCFGVSLMLDPKFVGEAMSVIAAN-TN 194 (326)
Q Consensus 127 iivQL~g--~~~~~f~~aA~~a~~aG~d~Iein~g--~P~~~---~~----r~d~yGgsl~~r~~~l~eiv~avr~~-~~ 194 (326)
++.=+.. .+.+.+.+.++.+.++|+|.|||.+- -|... ++ |-=..| -+.+.+.++++++|+. .+
T Consensus 22 li~yi~aGdP~~~~~~~~~~~l~~~GaD~iElGiPfSDP~aDGpvIq~a~~rAL~~G----~~~~~~~~~v~~~r~~~~~ 97 (271)
T 3nav_A 22 FVPFVTIGDPNPEQSLAIMQTLIDAGADALELGMPFSDPLADGPTIQGANLRALAAK----TTPDICFELIAQIRARNPE 97 (271)
T ss_dssp EEEEEETTSSCHHHHHHHHHHHHHTTCSSEEEECCCCCGGGCCSHHHHHHHHHHHTT----CCHHHHHHHHHHHHHHCTT
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHhcCCC
Confidence 4444443 45789999999999999999999753 22210 00 000012 3456788999999987 78
Q ss_pred CcEEEEeccCCCCCccHHHHHH---------------------HHHHHhhhCCccEEEEecC-Cc---------------
Q 020423 195 VPVSVKCRIGVDDHDSYNQLCD---------------------FIYKVSSLSPTRHFIIHSR-KA--------------- 237 (326)
Q Consensus 195 ~pv~vK~r~g~~~~~~~~e~~~---------------------~ia~~le~~Gvd~I~v~~~-~~--------------- 237 (326)
.|+.+-.-.+.-....++.+++ .+.+.+++.|++.|.+-.. +.
T Consensus 98 ~Pivlm~Y~n~v~~~g~~~f~~~~~~aGvdGvIipDlp~ee~~~~~~~~~~~gl~~I~lvap~t~~eri~~i~~~~~gfi 177 (271)
T 3nav_A 98 TPIGLLMYANLVYARGIDDFYQRCQKAGVDSVLIADVPTNESQPFVAAAEKFGIQPIFIAPPTASDETLRAVAQLGKGYT 177 (271)
T ss_dssp SCEEEEECHHHHHHTCHHHHHHHHHHHTCCEEEETTSCGGGCHHHHHHHHHTTCEEEEEECTTCCHHHHHHHHHHCCSCE
T ss_pred CCEEEEecCcHHHHHhHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHHCCCeE
Confidence 8987742111000000111111 1222334455554433211 10
Q ss_pred c---cCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHh
Q 020423 238 L---LNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 301 (326)
Q Consensus 238 ~---~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~ 301 (326)
+ ..|.++.. ...++...+.+.++++. .++||+..+||.+++++.+.+..|||+|.+|+++..
T Consensus 178 Y~vs~~GvTG~~-~~~~~~~~~~v~~vr~~-~~~Pv~vGfGIst~e~~~~~~~~gADgvIVGSAiv~ 242 (271)
T 3nav_A 178 YLLSRAGVTGAE-TKANMPVHALLERLQQF-DAPPALLGFGISEPAQVKQAIEAGAAGAISGSAVVK 242 (271)
T ss_dssp EECCCC---------CCHHHHHHHHHHHHT-TCCCEEECSSCCSHHHHHHHHHTTCSEEEESHHHHH
T ss_pred EEEeccCCCCcc-cCCchhHHHHHHHHHHh-cCCCEEEECCCCCHHHHHHHHHcCCCEEEECHHHHH
Confidence 0 01222211 11122123566666655 489999999999999999999999999999999874
|
| >3ndo_A Deoxyribose-phosphate aldolase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; HET: GOL; 1.25A {Mycobacterium smegmatis} PDB: 3ng3_A | Back alignment and structure |
|---|
Probab=98.48 E-value=2.7e-06 Score=75.23 Aligned_cols=144 Identities=19% Similarity=0.175 Sum_probs=97.3
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCC---ccH
Q 020423 135 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDH---DSY 211 (326)
Q Consensus 135 ~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~---~~~ 211 (326)
..+.-..-++.+.+.|+|.|++.. + +|.-...+.+.+.+-+.+|++.++ ...+|+-+-...- .+.
T Consensus 78 ~~~~K~~E~~~Ai~~GAdEIDmVi-----n------ig~lk~g~~~~v~~ei~~v~~a~~-~~~lKvIiEt~~L~~~~t~ 145 (231)
T 3ndo_A 78 VPGIKATEAELAVAAGATEIDMVI-----D------VGAALAGDLDAVSADITAVRKAVR-AATLKVIVESAALLEFSGE 145 (231)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEEEC-----C------HHHHHTTCHHHHHHHHHHHHHHTT-TSEEEEECCHHHHHHHTCH
T ss_pred cHHHHHHHHHHHHHcCCCEEEEEe-----e------hHhhhcccHHHHHHHHHHHHHHcc-CCceEEEEECcccCCCCCH
Confidence 455556677888899999999975 2 455455678889999999999885 3345755421100 123
Q ss_pred HHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCC
Q 020423 212 NQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAH 291 (326)
Q Consensus 212 ~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD 291 (326)
++... ..++..++|+|+|-.+.+....+|- ...+...+++... .+++|-++|||++.+++.++++.||+
T Consensus 146 eei~~-a~~ia~~aGADfVKTSTGf~~~~gA--------t~edv~lm~~~v~--~~v~VKaaGGIrt~~~a~~~i~aGa~ 214 (231)
T 3ndo_A 146 PLLAD-VCRVARDAGADFVKTSTGFHPSGGA--------SVQAVEIMARTVG--ERLGVKASGGIRTAEQAAAMLDAGAT 214 (231)
T ss_dssp HHHHH-HHHHHHHTTCSEEECCCSCCTTCSC--------CHHHHHHHHHHHT--TTSEEEEESSCCSHHHHHHHHHTTCS
T ss_pred HHHHH-HHHHHHHHCcCEEEcCCCCCCCCCC--------CHHHHHHHHHHhC--CCceEEEeCCCCCHHHHHHHHHhcch
Confidence 33333 5566778999999877543201111 1112344444443 37999999999999999999999999
Q ss_pred --hhhhhHHHHh
Q 020423 292 --HVMVGRAAYQ 301 (326)
Q Consensus 292 --~V~iGRall~ 301 (326)
++..|+.++.
T Consensus 215 RiGtS~g~~I~~ 226 (231)
T 3ndo_A 215 RLGLSGSRAVLD 226 (231)
T ss_dssp EEEESSHHHHHH
T ss_pred hcccchHHHHHh
Confidence 8888887764
|
| >3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0 | Back alignment and structure |
|---|
Probab=98.46 E-value=1.5e-06 Score=75.57 Aligned_cols=143 Identities=12% Similarity=0.090 Sum_probs=92.7
Q ss_pred CCcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEecc
Q 020423 124 QHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRI 203 (326)
Q Consensus 124 ~~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~ 203 (326)
+.|+.+.+.-.++.++ .++.+.++|+|+|-+|...+ .+.+.++++.+++. +.++.+-+..
T Consensus 53 ~~~i~~~~~~~~~~~~--~~~~~~~~Gad~v~v~~~~~-----------------~~~~~~~~~~~~~~-g~~~~v~~~~ 112 (211)
T 3f4w_A 53 HKEVLADAKIMDGGHF--ESQLLFDAGADYVTVLGVTD-----------------VLTIQSCIRAAKEA-GKQVVVDMIC 112 (211)
T ss_dssp TSEEEEEEEECSCHHH--HHHHHHHTTCSEEEEETTSC-----------------HHHHHHHHHHHHHH-TCEEEEECTT
T ss_pred CCEEEEEEEeccchHH--HHHHHHhcCCCEEEEeCCCC-----------------hhHHHHHHHHHHHc-CCeEEEEecC
Confidence 5688888754443322 26777889999999974210 23345666666553 5665553221
Q ss_pred CCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHH
Q 020423 204 GVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVN 283 (326)
Q Consensus 204 g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~ 283 (326)
. .+..+. + +.+.+.|+|+|.++.+.. |.. .++..++.++++++..+++||++.|||+ ++++.
T Consensus 113 -~---~t~~~~---~-~~~~~~g~d~i~v~~g~~---g~~------~~~~~~~~i~~l~~~~~~~~i~~~gGI~-~~~~~ 174 (211)
T 3f4w_A 113 -V---DDLPAR---V-RLLEEAGADMLAVHTGTD---QQA------AGRKPIDDLITMLKVRRKARIAVAGGIS-SQTVK 174 (211)
T ss_dssp -C---SSHHHH---H-HHHHHHTCCEEEEECCHH---HHH------TTCCSHHHHHHHHHHCSSCEEEEESSCC-TTTHH
T ss_pred -C---CCHHHH---H-HHHHHcCCCEEEEcCCCc---ccc------cCCCCHHHHHHHHHHcCCCcEEEECCCC-HHHHH
Confidence 1 122222 2 233457999998874321 100 0112367777777665689999999996 99999
Q ss_pred HHHHhCCChhhhhHHHHhCCc
Q 020423 284 AALRKGAHHVMVGRAAYQNPW 304 (326)
Q Consensus 284 ~~l~~GaD~V~iGRall~dP~ 304 (326)
++++.|||+|.+||+++..++
T Consensus 175 ~~~~~Gad~vvvGsai~~~~d 195 (211)
T 3f4w_A 175 DYALLGPDVVIVGSAITHAAD 195 (211)
T ss_dssp HHHTTCCSEEEECHHHHTCSS
T ss_pred HHHHcCCCEEEECHHHcCCCC
Confidence 999999999999999998766
|
| >3ngj_A Deoxyribose-phosphate aldolase; lyase, structural genomics, structural genomics center for infectious disease, ssgcid; 1.70A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=98.45 E-value=2.8e-06 Score=75.37 Aligned_cols=142 Identities=14% Similarity=0.120 Sum_probs=94.9
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHH
Q 020423 135 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQL 214 (326)
Q Consensus 135 ~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~ 214 (326)
..+.-...++.+.+.|+|.||++. + +|.-...+.+.+.+-+.+|++.++- ..+|+-+-.. .-+-++.
T Consensus 93 ~~~~Kv~Ea~~Ai~~GAdEIDmVi-----N------ig~lk~g~~~~v~~eI~~v~~a~~~-~~lKVIlEt~-~Lt~eei 159 (239)
T 3ngj_A 93 PSEVKAYETKVAVEQGAEEVDMVI-----N------IGMVKAKKYDDVEKDVKAVVDASGK-ALTKVIIECC-YLTNEEK 159 (239)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEEEC-----C------HHHHHTTCHHHHHHHHHHHHHHHTT-SEEEEECCGG-GSCHHHH
T ss_pred chHHHHHHHHHHHHcCCCEEEEEe-----e------hHHhccccHHHHHHHHHHHHHHhcC-CceEEEEecC-CCCHHHH
Confidence 455556677888889999999985 2 4544456778888889999888852 3566543111 1123333
Q ss_pred HHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCC--h
Q 020423 215 CDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAH--H 292 (326)
Q Consensus 215 ~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD--~ 292 (326)
.. +.++..++|+|+|-.+.+... +|. ...+.+.+++... .+++|-++|||++.+++.++++.||+ +
T Consensus 160 ~~-a~~ia~~aGADfVKTSTGf~~-ggA--------t~~dv~lmr~~vg--~~v~VKasGGIrt~~da~~~i~aGA~riG 227 (239)
T 3ngj_A 160 VE-VCKRCVAAGAEYVKTSTGFGT-HGA--------TPEDVKLMKDTVG--DKALVKAAGGIRTFDDAMKMINNGASRIG 227 (239)
T ss_dssp HH-HHHHHHHHTCSEEECCCSSSS-CCC--------CHHHHHHHHHHHG--GGSEEEEESSCCSHHHHHHHHHTTEEEEE
T ss_pred HH-HHHHHHHHCcCEEECCCCCCC-CCC--------CHHHHHHHHHhhC--CCceEEEeCCCCCHHHHHHHHHhccccee
Confidence 33 456667899999998754321 111 1112344444442 37999999999999999999999999 6
Q ss_pred hhhhHHHHh
Q 020423 293 VMVGRAAYQ 301 (326)
Q Consensus 293 V~iGRall~ 301 (326)
+..|+.++.
T Consensus 228 tS~~~~I~~ 236 (239)
T 3ngj_A 228 ASAGIAILN 236 (239)
T ss_dssp ESCHHHHHH
T ss_pred cccHHHHHh
Confidence 677776654
|
| >3r12_A Deoxyribose-phosphate aldolase; TIM beta/alpha-barrel, structural genomics, joint center for structural genomics, JCSG; HET: MSE CIT; 1.75A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1o0y_A* 3r13_A* | Back alignment and structure |
|---|
Probab=98.44 E-value=4e-06 Score=75.16 Aligned_cols=142 Identities=15% Similarity=0.130 Sum_probs=96.8
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHH
Q 020423 135 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQL 214 (326)
Q Consensus 135 ~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~ 214 (326)
..+.-..-++.|.+.|+|.|++.. + +|.-...+.+.+.+-+.+|++.++ ...+|+-+-... .+.++.
T Consensus 109 ~~~~Kv~Ea~~Ai~~GAdEIDmVi-----N------ig~lk~g~~~~v~~eI~~v~~a~~-~~~lKVIlEt~~-Lt~eei 175 (260)
T 3r12_A 109 ETRTKAHEAIFAVESGADEIDMVI-----N------VGMLKAKEWEYVYEDIRSVVESVK-GKVVKVIIETCY-LDTEEK 175 (260)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEC-----C------HHHHHTTCHHHHHHHHHHHHHHTT-TSEEEEECCGGG-CCHHHH
T ss_pred cHHHHHHHHHHHHHcCCCEEEEEe-----e------hhhhccccHHHHHHHHHHHHHhcC-CCcEEEEEeCCC-CCHHHH
Confidence 445556677788888999999975 2 455555678888888999988874 334565542111 123344
Q ss_pred HHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCC--h
Q 020423 215 CDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAH--H 292 (326)
Q Consensus 215 ~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD--~ 292 (326)
.. ..++..++|+|+|-.+.+... .|. ...+...+++... .+++|-++|||+|.+++.++++.||+ +
T Consensus 176 ~~-A~~ia~eaGADfVKTSTGf~~-~GA--------T~edV~lm~~~vg--~~v~VKaAGGIrt~~~al~mi~aGA~RiG 243 (260)
T 3r12_A 176 IA-ACVISKLAGAHFVKTSTGFGT-GGA--------TAEDVHLMKWIVG--DEMGVKASGGIRTFEDAVKMIMYGADRIG 243 (260)
T ss_dssp HH-HHHHHHHTTCSEEECCCSSSS-CCC--------CHHHHHHHHHHHC--TTSEEEEESSCCSHHHHHHHHHTTCSEEE
T ss_pred HH-HHHHHHHhCcCEEEcCCCCCC-CCC--------CHHHHHHHHHHhC--CCceEEEeCCCCCHHHHHHHHHcCCceee
Confidence 33 456677899999987754321 111 1112344444442 37999999999999999999999999 8
Q ss_pred hhhhHHHHh
Q 020423 293 VMVGRAAYQ 301 (326)
Q Consensus 293 V~iGRall~ 301 (326)
...|+.++.
T Consensus 244 tS~g~~I~~ 252 (260)
T 3r12_A 244 TSSGVKIVQ 252 (260)
T ss_dssp ESCHHHHHH
T ss_pred cchHHHHHH
Confidence 888888775
|
| >2oz8_A MLL7089 protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.48A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=98.44 E-value=5.1e-06 Score=79.29 Aligned_cols=124 Identities=9% Similarity=-0.033 Sum_probs=94.7
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC--CCcEEEEeccCCCCCccHH
Q 020423 135 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYN 212 (326)
Q Consensus 135 ~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~--~~pv~vK~r~g~~~~~~~~ 212 (326)
+++++.+.|+++.+.||+.++|+.|+ .++++..+++++||+++ ++++.+....+| +.+
T Consensus 145 ~~~~~~~~a~~~~~~Gf~~vKik~g~----------------~~~~~~~e~v~avR~a~G~~~~l~vDan~~~----~~~ 204 (389)
T 2oz8_A 145 DDDAFVSLFSHAASIGYSAFKIKVGH----------------RDFDRDLRRLELLKTCVPAGSKVMIDPNEAW----TSK 204 (389)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEEECCC----------------SSHHHHHHHHHHHHTTSCTTCEEEEECTTCB----CHH
T ss_pred CHHHHHHHHHHHHHhCCCEEEEccCC----------------CCHHHHHHHHHHHHHhhCCCCeEEEECCCCC----CHH
Confidence 79999999999999999999999764 13577889999999988 466776655544 345
Q ss_pred HHHHHHHHHhhh--CCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhC-
Q 020423 213 QLCDFIYKVSSL--SPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKG- 289 (326)
Q Consensus 213 e~~~~ia~~le~--~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~G- 289 (326)
+..++ .+.+++ .++++|. . ..++.+++.++++++...++||++.+.+ +++++.++++.|
T Consensus 205 ~a~~~-~~~l~~~g~~i~~iE----q------------P~~~~~~~~~~~l~~~~~~iPIa~dE~~-~~~~~~~~i~~~~ 266 (389)
T 2oz8_A 205 EALTK-LVAIREAGHDLLWVE----D------------PILRHDHDGLRTLRHAVTWTQINSGEYL-DLQGKRLLLEAHA 266 (389)
T ss_dssp HHHHH-HHHHHHTTCCCSEEE----S------------CBCTTCHHHHHHHHHHCCSSEEEECTTC-CHHHHHHHHHTTC
T ss_pred HHHHH-HHHHHhcCCCceEEe----C------------CCCCcCHHHHHHHHhhCCCCCEEeCCCC-CHHHHHHHHHcCC
Confidence 55554 455778 7777763 1 1123357777777765327999999999 999999999966
Q ss_pred CChhhhh
Q 020423 290 AHHVMVG 296 (326)
Q Consensus 290 aD~V~iG 296 (326)
+|.|++.
T Consensus 267 ~d~v~ik 273 (389)
T 2oz8_A 267 ADILNVH 273 (389)
T ss_dssp CSEEEEC
T ss_pred CCEEEEC
Confidence 9999997
|
| >1tzz_A Hypothetical protein L1841; structural genomics, mandelate racemase like fold, nysgxrc target T1523, PSI, protein structure initiative; 1.86A {Bradyrhizobium japonicum} SCOP: c.1.11.2 d.54.1.1 PDB: 2dw7_A* 2dw6_A* | Back alignment and structure |
|---|
Probab=98.43 E-value=4e-06 Score=80.08 Aligned_cols=124 Identities=12% Similarity=0.103 Sum_probs=96.0
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC--CCcEEEEeccCCCCCccHH
Q 020423 135 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYN 212 (326)
Q Consensus 135 ~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~--~~pv~vK~r~g~~~~~~~~ 212 (326)
+++++.+.|+++.+.||+.++|+.|+ .+++...+++++||+++ ++++.+....+| +.+
T Consensus 165 ~~~~~~~~a~~~~~~Gf~~iKik~g~----------------~~~~~~~e~v~avr~a~g~~~~l~vDan~~~----~~~ 224 (392)
T 1tzz_A 165 GLSMLRGEMRGYLDRGYNVVKMKIGG----------------APIEEDRMRIEAVLEEIGKDAQLAVDANGRF----NLE 224 (392)
T ss_dssp CHHHHHHHHHHHHTTTCSEEEEECSS----------------SCHHHHHHHHHHHHHHHTTTCEEEEECTTCC----CHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcCCC----------------CCHHHHHHHHHHHHHhcCCCCeEEEECCCCC----CHH
Confidence 78999999999999999999999764 13677889999999987 466777665555 345
Q ss_pred HHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhC---
Q 020423 213 QLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKG--- 289 (326)
Q Consensus 213 e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~G--- 289 (326)
+..++ .+.+++.|+++|. . ..++.+++.++++.+.. ++||++.+.+.+++++.++++.|
T Consensus 225 ~a~~~-~~~l~~~~i~~iE----q------------P~~~~d~~~~~~l~~~~-~iPIa~dE~~~~~~~~~~~i~~~~~~ 286 (392)
T 1tzz_A 225 TGIAY-AKMLRDYPLFWYE----E------------VGDPLDYALQAALAEFY-PGPMATGENLFSHQDARNLLRYGGMR 286 (392)
T ss_dssp HHHHH-HHHHTTSCCSEEE----C------------CSCTTCHHHHHHHTTTC-CSCEEECTTCCSHHHHHHHHHHSCCC
T ss_pred HHHHH-HHHHHHcCCCeec----C------------CCChhhHHHHHHHHhhC-CCCEEECCCCCCHHHHHHHHHcCCCc
Confidence 55564 4557889999874 1 11234577777776654 89999999999999999999966
Q ss_pred --CChhhhh
Q 020423 290 --AHHVMVG 296 (326)
Q Consensus 290 --aD~V~iG 296 (326)
+|.|++-
T Consensus 287 ~~~d~v~ik 295 (392)
T 1tzz_A 287 PDRDWLQFD 295 (392)
T ss_dssp TTTCEECCC
T ss_pred cCCcEEEEC
Confidence 9999874
|
| >2gdq_A YITF; mandelate racemase/muconate lactonizing enzyme, TIM-barrel, octamer, structural genomics, PSI; 1.80A {Bacillus subtilis subsp} SCOP: c.1.11.2 d.54.1.1 PDB: 2gge_A | Back alignment and structure |
|---|
Probab=98.43 E-value=2.7e-06 Score=80.99 Aligned_cols=124 Identities=8% Similarity=0.039 Sum_probs=95.8
Q ss_pred CCH---HHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC--CCcEEEEeccCCCCC
Q 020423 134 SNL---DNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDH 208 (326)
Q Consensus 134 ~~~---~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~--~~pv~vK~r~g~~~~ 208 (326)
.++ +++++.|+++.+.||+.++++.|+ .++++..+++++||+++ ++++.+....+|+
T Consensus 135 ~~~~~~e~~~~~a~~~~~~Gf~~vKik~g~----------------~~~~~d~e~v~avR~a~G~d~~l~vDan~~~~-- 196 (382)
T 2gdq_A 135 DSPQWISRSVSNVEAQLKKGFEQIKVKIGG----------------TSFKEDVRHINALQHTAGSSITMILDANQSYD-- 196 (382)
T ss_dssp SSTTHHHHHHHHHHHHHTTTCCEEEEECSS----------------SCHHHHHHHHHHHHHHHCTTSEEEEECTTCCC--
T ss_pred CCcccHHHHHHHHHHHHHcCCCEEEEcCCC----------------CCHHHHHHHHHHHHHhhCCCCEEEEECCCCCC--
Confidence 577 999999999999999999998754 13678889999999987 4677777655553
Q ss_pred ccHHHHHHHHHHHhhhC-CccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHH
Q 020423 209 DSYNQLCDFIYKVSSLS-PTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR 287 (326)
Q Consensus 209 ~~~~e~~~~ia~~le~~-Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~ 287 (326)
.++..++ .+.+++. |+++|. . ..++.+++.++++++.. ++||++.+.+.+++++.++++
T Consensus 197 --~~~a~~~-~~~l~~~~~i~~iE----q------------P~~~~d~~~~~~l~~~~-~iPIa~dE~~~~~~~~~~~i~ 256 (382)
T 2gdq_A 197 --AAAAFKW-ERYFSEWTNIGWLE----E------------PLPFDQPQDYAMLRSRL-SVPVAGGENMKGPAQYVPLLS 256 (382)
T ss_dssp --HHHHHTT-HHHHTTCSCEEEEE----C------------CSCSSCHHHHHHHHTTC-SSCEEECTTCCSHHHHHHHHH
T ss_pred --HHHHHHH-HHHHhhccCCeEEE----C------------CCCcccHHHHHHHHhhC-CCCEEecCCcCCHHHHHHHHH
Confidence 4555554 4567888 998874 1 11234577777777664 899999999999999999999
Q ss_pred hC-CChhhh
Q 020423 288 KG-AHHVMV 295 (326)
Q Consensus 288 ~G-aD~V~i 295 (326)
.| +|.|++
T Consensus 257 ~~~~d~v~i 265 (382)
T 2gdq_A 257 QRCLDIIQP 265 (382)
T ss_dssp TTCCSEECC
T ss_pred cCCCCEEec
Confidence 65 898887
|
| >2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A* | Back alignment and structure |
|---|
Probab=98.42 E-value=3.8e-07 Score=81.17 Aligned_cols=83 Identities=22% Similarity=0.260 Sum_probs=64.9
Q ss_pred HHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHH
Q 020423 219 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRA 298 (326)
Q Consensus 219 a~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRa 298 (326)
++.++++|+|+|+++..+....+ .+.. +.++++++.. ++||+++|||.+++++.++++.|||.|.+|++
T Consensus 37 a~~~~~~Gad~i~v~~~d~~~~~---------~~~~-~~i~~i~~~~-~ipv~v~ggi~~~~~~~~~l~~Gad~V~lg~~ 105 (244)
T 2y88_A 37 ALGWQRDGAEWIHLVDLDAAFGR---------GSNH-ELLAEVVGKL-DVQVELSGGIRDDESLAAALATGCARVNVGTA 105 (244)
T ss_dssp HHHHHHTTCSEEEEEEHHHHTTS---------CCCH-HHHHHHHHHC-SSEEEEESSCCSHHHHHHHHHTTCSEEEECHH
T ss_pred HHHHHHcCCCEEEEEcCcccccC---------CChH-HHHHHHHHhc-CCcEEEECCCCCHHHHHHHHHcCCCEEEECch
Confidence 44667899999999865432111 1122 6777777765 99999999999999999999999999999999
Q ss_pred HHhCCchhHHhHHH
Q 020423 299 AYQNPWYTLGHVDT 312 (326)
Q Consensus 299 ll~dP~l~~~~i~~ 312 (326)
++.+|+++.+.++.
T Consensus 106 ~l~~p~~~~~~~~~ 119 (244)
T 2y88_A 106 ALENPQWCARVIGE 119 (244)
T ss_dssp HHHCHHHHHHHHHH
T ss_pred HhhChHHHHHHHHH
Confidence 99999965555544
|
| >1w8s_A FBP aldolase, fructose-bisphosphate aldolase class I; TIM barrel, glycolytic, archaeal, catalytic mechanism, reaction intermediate, lyase; HET: FBP; 1.85A {Thermoproteus tenax} SCOP: c.1.10.1 PDB: 1w8r_A* 2yce_A* 1ojx_A 1ok4_A 1ok6_A | Back alignment and structure |
|---|
Probab=98.42 E-value=7.7e-06 Score=73.97 Aligned_cols=132 Identities=13% Similarity=0.082 Sum_probs=85.0
Q ss_pred HHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC---CCcEEEEeccCCCCC---ccHHHH
Q 020423 141 KATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT---NVPVSVKCRIGVDDH---DSYNQL 214 (326)
Q Consensus 141 ~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~---~~pv~vK~r~g~~~~---~~~~e~ 214 (326)
..++.+.+.|+|.|+++.. +|. .+.+...+.+.++++.+ +.|+.+=......+. .+.++.
T Consensus 96 ~~ve~Ai~~Ga~~v~~~~n-----------ig~---~~~~~~~~~~~~v~~~~~~~~~~vIi~~~~~G~~~~~~~s~~~i 161 (263)
T 1w8s_A 96 CSVEEAVSLGASAVGYTIY-----------PGS---GFEWKMFEELARIKRDAVKFDLPLVVESFPRGGKVVNETAPEIV 161 (263)
T ss_dssp SCHHHHHHTTCSEEEEEEC-----------TTS---TTHHHHHHHHHHHHHHHHHHTCCEEEEECCCSTTCCCTTCHHHH
T ss_pred HHHHHHHHCCCCEEEEEEe-----------cCC---cCHHHHHHHHHHHHHHHHHcCCeEEEEeeCCCCccccCCCHHHH
Confidence 4466788899999999651 110 12333444444444433 788876543311110 123333
Q ss_pred HHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCC--CHHHHHHHH----Hh
Q 020423 215 CDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGIN--TVDEVNAAL----RK 288 (326)
Q Consensus 215 ~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~--s~~da~~~l----~~ 288 (326)
. ..+++..+.|+|+|-+.. . ...+.++++++....+||++.|||. +.+++.+.+ +.
T Consensus 162 ~-~a~~~a~~~GAD~vkt~~--~---------------~~~e~~~~~~~~~~~~pV~asGGi~~~~~~~~l~~i~~~~~a 223 (263)
T 1w8s_A 162 A-YAARIALELGADAMKIKY--T---------------GDPKTFSWAVKVAGKVPVLMSGGPKTKTEEDFLKQVEGVLEA 223 (263)
T ss_dssp H-HHHHHHHHHTCSEEEEEC--C---------------SSHHHHHHHHHHTTTSCEEEECCSCCSSHHHHHHHHHHHHHT
T ss_pred H-HHHHHHHHcCCCEEEEcC--C---------------CCHHHHHHHHHhCCCCeEEEEeCCCCCCHHHHHHHHHHHHHc
Confidence 2 234566779999998762 1 1246666666665334999999999 899888777 68
Q ss_pred CCChhhhhHHHHhCCc
Q 020423 289 GAHHVMVGRAAYQNPW 304 (326)
Q Consensus 289 GaD~V~iGRall~dP~ 304 (326)
||+++.+||+++..|+
T Consensus 224 GA~GvsvgraI~~~~d 239 (263)
T 1w8s_A 224 GALGIAVGRNVWQRRD 239 (263)
T ss_dssp TCCEEEESHHHHTSTT
T ss_pred CCeEEEEehhhcCCcC
Confidence 9999999999998776
|
| >1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A | Back alignment and structure |
|---|
Probab=98.41 E-value=3.7e-07 Score=81.33 Aligned_cols=83 Identities=20% Similarity=0.252 Sum_probs=65.1
Q ss_pred HHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHH
Q 020423 219 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRA 298 (326)
Q Consensus 219 a~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRa 298 (326)
++.++++|+|+|+++..+....+ .... +.++++++.. ++|++.+|||.++++++++++.|||.|.+|+.
T Consensus 38 a~~~~~~Gad~i~v~~~d~~~~~---------~~~~-~~i~~i~~~~-~ipv~v~ggI~~~~~~~~~l~~Gad~V~lg~~ 106 (244)
T 1vzw_A 38 ALAWQRSGAEWLHLVDLDAAFGT---------GDNR-ALIAEVAQAM-DIKVELSGGIRDDDTLAAALATGCTRVNLGTA 106 (244)
T ss_dssp HHHHHHTTCSEEEEEEHHHHHTS---------CCCH-HHHHHHHHHC-SSEEEEESSCCSHHHHHHHHHTTCSEEEECHH
T ss_pred HHHHHHcCCCEEEEecCchhhcC---------CChH-HHHHHHHHhc-CCcEEEECCcCCHHHHHHHHHcCCCEEEECch
Confidence 45667899999999865432111 1123 6677777765 99999999999999999999999999999999
Q ss_pred HHhCCchhHHhHHH
Q 020423 299 AYQNPWYTLGHVDT 312 (326)
Q Consensus 299 ll~dP~l~~~~i~~ 312 (326)
++.||+++.+.++.
T Consensus 107 ~l~~p~~~~~~~~~ 120 (244)
T 1vzw_A 107 ALETPEWVAKVIAE 120 (244)
T ss_dssp HHHCHHHHHHHHHH
T ss_pred HhhCHHHHHHHHHH
Confidence 99999966555554
|
| >3bjs_A Mandelate racemase/muconate lactonizing enzyme; enolase, structural genomics, PSI-2, protein struc initiative; 2.70A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=98.38 E-value=2.2e-06 Score=82.96 Aligned_cols=123 Identities=11% Similarity=0.065 Sum_probs=94.1
Q ss_pred CCH-HHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC--CCcEEEEeccCCCCCcc
Q 020423 134 SNL-DNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDS 210 (326)
Q Consensus 134 ~~~-~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~--~~pv~vK~r~g~~~~~~ 210 (326)
.++ +++.+.|+++.+.||+.++++.|+ ++++..+++++||+++ ++++.+....+| +
T Consensus 183 ~~~~e~~~~~a~~~~~~Gf~~vKik~g~-----------------~~~~d~e~v~avR~avG~d~~l~vDan~~~----~ 241 (428)
T 3bjs_A 183 YQPKESLAEEAQEYIARGYKALKLRIGD-----------------AARVDIERVRHVRKVLGDEVDILTDANTAY----T 241 (428)
T ss_dssp SCCHHHHHHHHHHHHHHTCSEEEEECCS-----------------CHHHHHHHHHHHHHHHCTTSEEEEECTTCC----C
T ss_pred CChHHHHHHHHHHHHHCCCCEEEECCCC-----------------CHHHHHHHHHHHHHhcCCCCEEEEECCCCC----C
Confidence 468 999999999999999999998653 3677889999999987 466766655444 3
Q ss_pred HHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCC-ceEEEeCCCCCHHHHHHHHHhC
Q 020423 211 YNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPD-LTFTLNGGINTVDEVNAALRKG 289 (326)
Q Consensus 211 ~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~-iPVIa~GgI~s~~da~~~l~~G 289 (326)
.++..++ .+.+++.|+++|. . ..++.+++.++++++. .+ +||++.+.+.+++++.++++.|
T Consensus 242 ~~eai~~-~~~L~~~~i~~iE----q------------P~~~~d~~~~~~l~~~-~~~iPIa~dE~~~~~~~~~~~i~~~ 303 (428)
T 3bjs_A 242 MADARRV-LPVLAEIQAGWLE----E------------PFACNDFASYREVAKI-TPLVPIAAGENHYTRFEFGQMLDAG 303 (428)
T ss_dssp HHHHHHH-HHHHHHTTCSCEE----C------------CSCTTCHHHHHHHTTT-CSSSCEEECTTCCSHHHHHHHHTTC
T ss_pred HHHHHHH-HHHHHhcCCCEEE----C------------CCCccCHHHHHHHHHh-CCCCcEEcCCCcCCHHHHHHHHHhC
Confidence 4566664 4557889999874 1 1123357777777665 47 9999999999999999999865
Q ss_pred -CChhhh
Q 020423 290 -AHHVMV 295 (326)
Q Consensus 290 -aD~V~i 295 (326)
+|.|++
T Consensus 304 ~~d~v~i 310 (428)
T 3bjs_A 304 AVQVWQP 310 (428)
T ss_dssp CEEEECC
T ss_pred CCCEEEe
Confidence 888876
|
| >3eez_A Putative mandelate racemase/muconate lactonizing enzyme; structural genomics, unknown function, PSI-2, protein structure initiative; 2.80A {Silicibacter pomeroyi} | Back alignment and structure |
|---|
Probab=98.37 E-value=5.5e-06 Score=78.79 Aligned_cols=142 Identities=11% Similarity=0.052 Sum_probs=108.5
Q ss_pred CcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC--CCcEEEEec
Q 020423 125 HPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCR 202 (326)
Q Consensus 125 ~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~--~~pv~vK~r 202 (326)
-|+..++...+++++++.++.+.+.||+.+.+++|+ +++.-.+.+++||+++ +.++.++..
T Consensus 135 v~~~~~~~~~~~e~~~~~a~~~~~~G~~~iKiK~G~-----------------~~~~d~~~v~avR~a~g~~~~l~vDan 197 (378)
T 3eez_A 135 RPIASSVGAKSVEETRAVIDRYRQRGYVAHSVKIGG-----------------DVERDIARIRDVEDIREPGEIVLYDVN 197 (378)
T ss_dssp EEBBCCBCSCCHHHHHHHHHHHHHTTCCEEEEECCS-----------------CHHHHHHHHHHHTTSCCTTCEEEEECT
T ss_pred EEEEEEecCCCHHHHHHHHHHHHhCCCCEEEeccCC-----------------CHHHHHHHHHHHHHHcCCCceEEEECC
Confidence 345556667889999999999999999999998764 2556678899999988 577888877
Q ss_pred cCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHH
Q 020423 203 IGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEV 282 (326)
Q Consensus 203 ~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da 282 (326)
.+|+ .++..+ +++.+++.|+ +|. . ..+ +++.++++++.. ++||++.+.+.+++++
T Consensus 198 ~~~~----~~~a~~-~~~~l~~~~i-~iE----q------------P~~--~~~~~~~l~~~~-~iPIa~dE~~~~~~~~ 252 (378)
T 3eez_A 198 RGWT----RQQALR-VMRATEDLHV-MFE----Q------------PGE--TLDDIAAIRPLH-SAPVSVDECLVTLQDA 252 (378)
T ss_dssp TCCC----HHHHHH-HHHHTGGGTC-CEE----C------------CSS--SHHHHHHTGGGC-CCCEEECTTCCSHHHH
T ss_pred CCCC----HHHHHH-HHHHhccCCe-EEe----c------------CCC--CHHHHHHHHhhC-CCCEEECCCCCCHHHH
Confidence 7765 334444 4556777888 773 1 011 477777776664 8999999999999999
Q ss_pred HHHHHhC-CChhhhhHHHHhCCchhHH
Q 020423 283 NAALRKG-AHHVMVGRAAYQNPWYTLG 308 (326)
Q Consensus 283 ~~~l~~G-aD~V~iGRall~dP~l~~~ 308 (326)
.++++.| +|.|++-..-...+.-+.+
T Consensus 253 ~~~l~~~~~d~v~ik~~~~GGit~~~~ 279 (378)
T 3eez_A 253 ARVARDGLAEVFGIKLNRVGGLTRAAR 279 (378)
T ss_dssp HHHHHTTCCSEEEEEHHHHTSHHHHHH
T ss_pred HHHHHcCCCCEEEeCchhcCCHHHHHH
Confidence 9999965 9999999888877764333
|
| >1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2 PDB: 1h1z_A | Back alignment and structure |
|---|
Probab=98.37 E-value=9.1e-06 Score=71.75 Aligned_cols=144 Identities=15% Similarity=0.237 Sum_probs=93.9
Q ss_pred CCcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEecc
Q 020423 124 QHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRI 203 (326)
Q Consensus 124 ~~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~ 203 (326)
+.++.+-|+.++++.|.+. +.++|+|+|.+|..... +.+.+.++.+++. +..+.+.+.+
T Consensus 64 ~~~~~v~lmv~d~~~~i~~---~~~agad~v~vH~~~~~-----------------~~~~~~~~~i~~~-g~~igv~~~p 122 (228)
T 1h1y_A 64 KAYLDCHLMVTNPSDYVEP---LAKAGASGFTFHIEVSR-----------------DNWQELIQSIKAK-GMRPGVSLRP 122 (228)
T ss_dssp CSEEEEEEESSCGGGGHHH---HHHHTCSEEEEEGGGCT-----------------TTHHHHHHHHHHT-TCEEEEEECT
T ss_pred CCcEEEEEEecCHHHHHHH---HHHcCCCEEEECCCCcc-----------------cHHHHHHHHHHHc-CCCEEEEEeC
Confidence 4588888998888766444 44579999999964211 1113455566543 6677766654
Q ss_pred CCCCCccHHHHHHHHHHHhhhC--CccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHH
Q 020423 204 GVDDHDSYNQLCDFIYKVSSLS--PTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDE 281 (326)
Q Consensus 204 g~~~~~~~~e~~~~ia~~le~~--Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~d 281 (326)
.... +.+ ..+ .+. ++|++-+.+..+..+|. ...+..++.+.++++...++||++.|||+. +.
T Consensus 123 ~t~~-e~~-------~~~-~~~~~~~d~vl~~sv~pg~~g~------~~~~~~l~~i~~~~~~~~~~pi~v~GGI~~-~n 186 (228)
T 1h1y_A 123 GTPV-EEV-------FPL-VEAENPVELVLVMTVEPGFGGQ------KFMPEMMEKVRALRKKYPSLDIEVDGGLGP-ST 186 (228)
T ss_dssp TSCG-GGG-------HHH-HHSSSCCSEEEEESSCTTCSSC------CCCGGGHHHHHHHHHHCTTSEEEEESSCST-TT
T ss_pred CCCH-HHH-------HHH-HhcCCCCCEEEEEeecCCCCcc------cCCHHHHHHHHHHHHhcCCCCEEEECCcCH-HH
Confidence 3221 111 112 234 89999886544321221 112333566666666544899999999976 89
Q ss_pred HHHHHHhCCChhhhhHHHHhCCc
Q 020423 282 VNAALRKGAHHVMVGRAAYQNPW 304 (326)
Q Consensus 282 a~~~l~~GaD~V~iGRall~dP~ 304 (326)
+.++++.|||++.+|++++..|+
T Consensus 187 i~~~~~aGaD~vvvGsai~~~~d 209 (228)
T 1h1y_A 187 IDVAASAGANCIVAGSSIFGAAE 209 (228)
T ss_dssp HHHHHHHTCCEEEESHHHHTSSC
T ss_pred HHHHHHcCCCEEEECHHHHCCCC
Confidence 99999999999999999998766
|
| >1yad_A Regulatory protein TENI; TIM barrel, transcription; 2.10A {Bacillus subtilis} PDB: 3qh2_A* | Back alignment and structure |
|---|
Probab=98.36 E-value=5.2e-06 Score=72.79 Aligned_cols=74 Identities=9% Similarity=0.082 Sum_probs=55.2
Q ss_pred hhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhC
Q 020423 223 SLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN 302 (326)
Q Consensus 223 e~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~d 302 (326)
.+.|+|+|.+........ . +..++..|+.++++.+.. ++||++.||| +++++.++++.|||+|.+|++++.+
T Consensus 127 ~~~gaD~i~~~~~f~~~~--~----~g~~~~~~~~l~~~~~~~-~~pvia~GGI-~~~nv~~~~~~Ga~gv~vgs~i~~~ 198 (221)
T 1yad_A 127 EKEDADYVLFGHVFETDC--K----KGLEGRGVSLLSDIKQRI-SIPVIAIGGM-TPDRLRDVKQAGADGIAVMSGIFSS 198 (221)
T ss_dssp HHTTCSEEEEECCC----------------CHHHHHHHHHHHC-CSCEEEESSC-CGGGHHHHHHTTCSEEEESHHHHTS
T ss_pred HhCCCCEEEECCccccCC--C----CCCCCCCHHHHHHHHHhC-CCCEEEECCC-CHHHHHHHHHcCCCEEEEhHHhhCC
Confidence 458999998865321100 0 001244588888887665 8999999999 9999999999999999999999987
Q ss_pred Cc
Q 020423 303 PW 304 (326)
Q Consensus 303 P~ 304 (326)
++
T Consensus 199 ~d 200 (221)
T 1yad_A 199 AE 200 (221)
T ss_dssp SS
T ss_pred CC
Confidence 76
|
| >3sjn_A Mandelate racemase/muconate lactonizing protein; enolase, magnesium binding site, lyase; 1.90A {Shewanella pealeana} | Back alignment and structure |
|---|
Probab=98.36 E-value=3.6e-06 Score=79.90 Aligned_cols=126 Identities=12% Similarity=0.058 Sum_probs=97.5
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC--CCcEEEEeccCCCCCccHH
Q 020423 135 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYN 212 (326)
Q Consensus 135 ~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~--~~pv~vK~r~g~~~~~~~~ 212 (326)
+++++++.|+++.+.||+.+.++.|++ | .+++...+.+++||+++ +.++.+....+|++ .+
T Consensus 146 ~~e~~~~~a~~~~~~Gf~~iKlk~g~~----------g----~~~~~d~~~v~avR~a~g~~~~l~vDan~~~~d---~~ 208 (374)
T 3sjn_A 146 KPEDNVAIVQGLKDQGFSSIKFGGGVM----------G----DDPDTDYAIVKAVREAAGPEMEVQIDLASKWHT---CG 208 (374)
T ss_dssp SGGGGHHHHHHHHTTTCSEEEEECTTT----------T----SCHHHHHHHHHHHHHHHCSSSEEEEECTTTTCS---HH
T ss_pred CHHHHHHHHHHHHHcCCCEEEeccCCC----------C----CCHHHHHHHHHHHHHHhCCCCeEEEECCCCCCC---HH
Confidence 348999999999999999999998754 2 24788889999999986 56788877766652 34
Q ss_pred HHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHh-CCC
Q 020423 213 QLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRK-GAH 291 (326)
Q Consensus 213 e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~-GaD 291 (326)
+..+ +++.+++.|+++|. . ..++.+++.++++++.. ++||++.+.+.+++++.++++. .+|
T Consensus 209 ~A~~-~~~~l~~~~i~~iE----q------------P~~~~~~~~~~~l~~~~-~iPIa~dE~~~~~~~~~~~l~~~~~d 270 (374)
T 3sjn_A 209 HSAM-MAKRLEEFNLNWIE----E------------PVLADSLISYEKLSRQV-SQKIAGGESLTTRYEFQEFITKSNAD 270 (374)
T ss_dssp HHHH-HHHHSGGGCCSEEE----C------------SSCTTCHHHHHHHHHHC-SSEEEECTTCCHHHHHHHHHHHHCCS
T ss_pred HHHH-HHHHhhhcCceEEE----C------------CCCcccHHHHHHHHhhC-CCCEEeCCCcCCHHHHHHHHHcCCCC
Confidence 4444 45677889999985 1 11233577777887764 8999999999999999999985 589
Q ss_pred hhhh
Q 020423 292 HVMV 295 (326)
Q Consensus 292 ~V~i 295 (326)
.|++
T Consensus 271 ~v~~ 274 (374)
T 3sjn_A 271 IVQP 274 (374)
T ss_dssp EECC
T ss_pred EEEe
Confidence 8876
|
| >1ub3_A Aldolase protein; schiff base, deoxyribose phosphate, carbinolamine, structural genomics, riken structural genomics/proteomics initiative; HET: HPD; 1.40A {Thermus thermophilus} SCOP: c.1.10.1 PDB: 1j2w_A* | Back alignment and structure |
|---|
Probab=98.36 E-value=1.2e-05 Score=70.68 Aligned_cols=142 Identities=13% Similarity=0.100 Sum_probs=96.4
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHH
Q 020423 135 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQL 214 (326)
Q Consensus 135 ~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~ 214 (326)
..+.-...++.+.+.|+|.|+++. + +|.-...+.+.+.+-+.++++.++.+ .+|+-+-... .+.++.
T Consensus 69 ~~~~k~~e~~~Ai~~GAdevd~vi-----n------ig~~~~g~~~~v~~ei~~v~~a~~~~-~lkvIlet~~-l~~e~i 135 (220)
T 1ub3_A 69 EKEVKALEAALACARGADEVDMVL-----H------LGRAKAGDLDYLEAEVRAVREAVPQA-VLKVILETGY-FSPEEI 135 (220)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEEEC-----C------HHHHHTTCHHHHHHHHHHHHHHSTTS-EEEEECCGGG-SCHHHH
T ss_pred chHHHHHHHHHHHHcCCCEEEecc-----c------chhhhCCCHHHHHHHHHHHHHHHcCC-CceEEEecCC-CCHHHH
Confidence 445566677888999999999986 2 34433456788888888888888543 5664332111 123333
Q ss_pred HHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCC--h
Q 020423 215 CDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAH--H 292 (326)
Q Consensus 215 ~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD--~ 292 (326)
....++..++|+|+|-.+.+... +|. .+.+.+.+.+.. . .++||-++|||++.+++.++++.||+ +
T Consensus 136 -~~a~~ia~eaGADfVKTsTGf~~-~ga--------t~~dv~~m~~~v-g-~~v~VkaaGGirt~~~al~~i~aGa~RiG 203 (220)
T 1ub3_A 136 -ARLAEAAIRGGADFLKTSTGFGP-RGA--------SLEDVALLVRVA-Q-GRAQVKAAGGIRDRETALRMLKAGASRLG 203 (220)
T ss_dssp -HHHHHHHHHHTCSEEECCCSSSS-CCC--------CHHHHHHHHHHH-T-TSSEEEEESSCCSHHHHHHHHHTTCSEEE
T ss_pred -HHHHHHHHHhCCCEEEeCCCCCC-CCC--------CHHHHHHHHHhh-C-CCCeEEEECCCCCHHHHHHHHHCCCcccc
Confidence 33566777899999987753310 111 111244444444 2 37999999999999999999999999 9
Q ss_pred hhhhHHHHh
Q 020423 293 VMVGRAAYQ 301 (326)
Q Consensus 293 V~iGRall~ 301 (326)
+..|+.++.
T Consensus 204 ~S~g~~I~~ 212 (220)
T 1ub3_A 204 TSSGVALVA 212 (220)
T ss_dssp ETTHHHHHC
T ss_pred hhHHHHHHH
Confidence 999998764
|
| >3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A | Back alignment and structure |
|---|
Probab=98.34 E-value=1.1e-05 Score=71.52 Aligned_cols=152 Identities=17% Similarity=0.224 Sum_probs=100.3
Q ss_pred cEEEEecCCCHHHHHHHHHHHHHCCCCEEEec--CCCCCCcccCCCCccccccCCHHHHHHHHHHHHhc--CCCcEEEEe
Q 020423 126 PIVLQIGGSNLDNLAKATELANAYNYDEINLN--CGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAAN--TNVPVSVKC 201 (326)
Q Consensus 126 piivQL~g~~~~~f~~aA~~a~~aG~d~Iein--~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~--~~~pv~vK~ 201 (326)
.+..+|...+...+.+..+++.++|.|.+.+- -|.-.++ . .|| + ++++++|+. .+.|+.+++
T Consensus 6 ~i~psil~~D~~~l~~~i~~l~~~g~d~~h~DVmDg~Fvpn-~---~~G------~----~~v~~ir~~~~~~~~~dvhL 71 (228)
T 3ovp_A 6 KIGPSILNSDLANLGAECLRMLDSGADYLHLDVMDGHFVPN-I---TFG------H----PVVESLRKQLGQDPFFDMHM 71 (228)
T ss_dssp EEEEBCTTSCGGGHHHHHHHHHHTTCSCEEEEEEBSSSSSC-B---CBC------H----HHHHHHHHHHCSSSCEEEEE
T ss_pred EeeeeheeCCchhHHHHHHHHHHcCCCEEEEEecCCCcCcc-c---ccC------H----HHHHHHHHhhCCCCcEEEEE
Confidence 46677778888889999999999999966652 2222221 1 156 3 466777776 478898887
Q ss_pred ccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcc-----------c-------------------------------
Q 020423 202 RIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKAL-----------L------------------------------- 239 (326)
Q Consensus 202 r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~-----------~------------------------------- 239 (326)
-.. +...+ +. .+.++|+|+|++|.-... .
T Consensus 72 mv~--~p~~~------i~-~~~~aGad~itvH~Ea~~~~~~~i~~i~~~G~k~gval~p~t~~e~l~~~l~~~D~Vl~ms 142 (228)
T 3ovp_A 72 MVS--KPEQW------VK-PMAVAGANQYTFHLEATENPGALIKDIRENGMKVGLAIKPGTSVEYLAPWANQIDMALVMT 142 (228)
T ss_dssp ECS--CGGGG------HH-HHHHHTCSEEEEEGGGCSCHHHHHHHHHHTTCEEEEEECTTSCGGGTGGGGGGCSEEEEES
T ss_pred EeC--CHHHH------HH-HHHHcCCCEEEEccCCchhHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHhccCCeEEEee
Confidence 763 22221 11 223578888888853100 0
Q ss_pred --CCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhCCc
Q 020423 240 --NGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW 304 (326)
Q Consensus 240 --~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~dP~ 304 (326)
.|..+ ....+..++.++++++...++||...||| +++.+.++.+.|||.+.+||++...++
T Consensus 143 v~pGf~G---q~f~~~~l~ki~~lr~~~~~~~I~VdGGI-~~~t~~~~~~aGAd~~VvGsaIf~a~d 205 (228)
T 3ovp_A 143 VEPGFGG---QKFMEDMMPKVHWLRTQFPSLDIEVDGGV-GPDTVHKCAEAGANMIVSGSAIMRSED 205 (228)
T ss_dssp SCTTTCS---CCCCGGGHHHHHHHHHHCTTCEEEEESSC-STTTHHHHHHHTCCEEEESHHHHTCSC
T ss_pred ecCCCCC---cccCHHHHHHHHHHHHhcCCCCEEEeCCc-CHHHHHHHHHcCCCEEEEeHHHhCCCC
Confidence 01111 11112235567777766667999999999 589999999999999999999997665
|
| >3rcy_A Mandelate racemase/muconate lactonizing enzyme-LI protein; structural genomics, protein structure initiative; HET: RIB; 1.99A {Roseovarius SP} PDB: 3t4w_A | Back alignment and structure |
|---|
Probab=98.34 E-value=8.4e-06 Score=78.89 Aligned_cols=141 Identities=14% Similarity=0.087 Sum_probs=104.6
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCcccc-ccCCHHHHHHHHHHHHhcCC--CcEEEEeccCCCCCcc
Q 020423 134 SNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVS-LMLDPKFVGEAMSVIAANTN--VPVSVKCRIGVDDHDS 210 (326)
Q Consensus 134 ~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgs-l~~r~~~l~eiv~avr~~~~--~pv~vK~r~g~~~~~~ 210 (326)
.+++++++.|+.+.+.||+.+.++.++|... .+|.. ..++.+...+++++||++++ +++.+....+| +
T Consensus 145 ~~~e~~~~~a~~~~~~Gf~~iKlk~g~~~~~-----~~G~~~~~~~~~~d~e~v~avR~avG~d~~L~vDan~~~----t 215 (433)
T 3rcy_A 145 TSADMAAESAADCVARGYTAVKFDPAGPYTL-----RGGHMPAMTDISLSVEFCRKIRAAVGDKADLLFGTHGQF----T 215 (433)
T ss_dssp TCHHHHHHHHHHHHHTTCSEEEECCSCCCBT-----TCCBCCCHHHHHHHHHHHHHHHHHHTTSSEEEECCCSCB----C
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEcCCCCccc-----ccCCCcchhhHHHHHHHHHHHHHHhCCCCeEEEeCCCCC----C
Confidence 5899999999999999999999999988632 12321 12356788899999999874 56666544444 3
Q ss_pred HHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhC-
Q 020423 211 YNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKG- 289 (326)
Q Consensus 211 ~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~G- 289 (326)
.++..+ +++.+++.|+++|. . ..++.+++.++++++.. ++||++.+.+.+++++.++++.|
T Consensus 216 ~~~A~~-~~~~Le~~~i~~iE----e------------P~~~~~~~~~~~l~~~~-~iPIa~dE~~~~~~~~~~~l~~g~ 277 (433)
T 3rcy_A 216 TAGAIR-LGQAIEPYSPLWYE----E------------PVPPDNVGAMAQVARAV-RIPVATGERLTTKAEFAPVLREGA 277 (433)
T ss_dssp HHHHHH-HHHHHGGGCCSEEE----C------------CSCTTCHHHHHHHHHHS-SSCEEECTTCCSHHHHHHHHHTTC
T ss_pred HHHHHH-HHHHhhhcCCCEEE----C------------CCChhhHHHHHHHHhcc-CCCEEecCCCCCHHHHHHHHHcCC
Confidence 455555 45667889999985 1 11233577788887774 89999999999999999999965
Q ss_pred CChhhhhHHHHh
Q 020423 290 AHHVMVGRAAYQ 301 (326)
Q Consensus 290 aD~V~iGRall~ 301 (326)
+|.|++--.-..
T Consensus 278 ~D~v~~d~~~~G 289 (433)
T 3rcy_A 278 AAILQPALGRAG 289 (433)
T ss_dssp CSEECCCHHHHT
T ss_pred CCEEEeCchhcC
Confidence 999988655443
|
| >2hxt_A L-fuconate dehydratase; enolase superfamily, D-erythromohydr unknown function; HET: EHM; 1.70A {Xanthomonas campestris PV} PDB: 1yey_A 2hxu_A* 2hne_A | Back alignment and structure |
|---|
Probab=98.34 E-value=6.6e-06 Score=79.80 Aligned_cols=125 Identities=11% Similarity=0.088 Sum_probs=94.2
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC--CCcEEEEeccCCCCCcc
Q 020423 133 GSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDS 210 (326)
Q Consensus 133 g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~--~~pv~vK~r~g~~~~~~ 210 (326)
+.+++++.+.|+++.+.||+.|+||.|. ++++..+.+++||+++ ++++.+....+| +
T Consensus 196 ~~~~e~~~~~a~~~~~~Gf~~vKik~g~-----------------~~~~d~e~v~avR~a~G~d~~l~vDan~~~----~ 254 (441)
T 2hxt_A 196 GYSDEKLVRLAKEAVADGFRTIKLKVGA-----------------NVQDDIRRCRLARAAIGPDIAMAVDANQRW----D 254 (441)
T ss_dssp TSCHHHHHHHHHHHHHTTCSEEEEECCS-----------------CHHHHHHHHHHHHHHHCSSSEEEEECTTCC----C
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEccCC-----------------CHHHHHHHHHHHHHhcCCCCeEEEECCCCC----C
Confidence 3479999999999999999999998651 3677889999999987 456666654444 3
Q ss_pred HHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhC-
Q 020423 211 YNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKG- 289 (326)
Q Consensus 211 ~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~G- 289 (326)
.++..++ .+.+++.|+++|. . ..++.+++..+++.+....+||++.+.+.+++++.++++.|
T Consensus 255 ~~~a~~~-~~~l~~~~i~~iE----q------------P~~~~d~~~~~~l~~~~~~iPIa~dE~~~~~~~~~~~i~~~~ 317 (441)
T 2hxt_A 255 VGPAIDW-MRQLAEFDIAWIE----E------------PTSPDDVLGHAAIRQGITPVPVSTGEHTQNRVVFKQLLQAGA 317 (441)
T ss_dssp HHHHHHH-HHTTGGGCCSCEE----C------------CSCTTCHHHHHHHHHHHTTSCEEECTTCCSHHHHHHHHHHTC
T ss_pred HHHHHHH-HHHHHhcCCCeee----C------------CCCHHHHHHHHHHHhhCCCCCEEEeCCcCCHHHHHHHHHcCC
Confidence 4565664 4567888999874 1 11233477777776653259999999999999999999866
Q ss_pred CChhhh
Q 020423 290 AHHVMV 295 (326)
Q Consensus 290 aD~V~i 295 (326)
+|.|++
T Consensus 318 ~d~v~i 323 (441)
T 2hxt_A 318 VDLIQI 323 (441)
T ss_dssp CSEECC
T ss_pred CCEEEe
Confidence 888876
|
| >4gj1_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; HISA, csgid, niaid,; 2.15A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=98.34 E-value=7e-06 Score=73.37 Aligned_cols=157 Identities=12% Similarity=0.237 Sum_probs=96.4
Q ss_pred CcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC-CCcEEEEecc
Q 020423 125 HPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCRI 203 (326)
Q Consensus 125 ~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~-~~pv~vK~r~ 203 (326)
..+-+|+.|-- .. .+.++.+-++|+|-|-+|. ....+|+++.++.+..-... -..+.+|..-
T Consensus 74 ~~~pl~vGGGI-rs-~e~~~~~l~~GadkVii~t---------------~a~~~p~li~e~~~~~g~q~iv~~iD~~~~~ 136 (243)
T 4gj1_A 74 VSVNLQVGGGI-RS-KEEVKALLDCGVKRVVIGS---------------MAIKDATLCLEILKEFGSEAIVLALDTILKE 136 (243)
T ss_dssp CCSEEEEESSC-CC-HHHHHHHHHTTCSEEEECT---------------TTTTCHHHHHHHHHHHCTTTEEEEEEEEESS
T ss_pred cCCCeEecccc-cc-HHHHHHHHHcCCCEEEEcc---------------ccccCCchHHHHHhcccCceEEEEEEEEeCC
Confidence 34567886631 11 2345566678999999863 12267999999888764321 2223333221
Q ss_pred -------CCCCCccHHHHHHHHHHHhhhCCccEEEEecCC--cccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeC
Q 020423 204 -------GVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRK--ALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNG 274 (326)
Q Consensus 204 -------g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~--~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~G 274 (326)
+|.+.... ++.++ .+.+++.|+..|.++.-. ....| .+.+.+.++.+..+++|||++|
T Consensus 137 ~~~v~~~gw~~~~~~-~~~~~-~~~~~~~g~~eil~t~Id~DGt~~G-----------~d~~l~~~l~~~~~~ipviasG 203 (243)
T 4gj1_A 137 DYVVAVNAWQEASDK-KLMEV-LDFYSNKGLKHILCTDISKDGTMQG-----------VNVRLYKLIHEIFPNICIQASG 203 (243)
T ss_dssp SEEEC--------CC-BHHHH-HHHHHTTTCCEEEEEETTC-----C-----------CCHHHHHHHHHHCTTSEEEEES
T ss_pred CCEEEecCceecccc-hHHHH-HHHHhhcCCcEEEeeeecccccccC-----------CCHHHHHHHHHhcCCCCEEEEc
Confidence 23332111 12232 334567999999988543 22222 3478888887776689999999
Q ss_pred CCCCHHHHHHHHHhCCChhhhhHHHHhCCchhHHhHHHh
Q 020423 275 GINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTA 313 (326)
Q Consensus 275 gI~s~~da~~~l~~GaD~V~iGRall~dP~l~~~~i~~~ 313 (326)
|+.+.+|+.++ +.++++|.+|++++..-. -.+++.+.
T Consensus 204 Gv~~~~Dl~~l-~~~~~gvivg~Al~~g~i-~l~ea~~~ 240 (243)
T 4gj1_A 204 GVASLKDLENL-KGICSGVIVGKALLDGVF-SVEEGIRC 240 (243)
T ss_dssp CCCSHHHHHHT-TTTCSEEEECHHHHTTSS-CHHHHHHH
T ss_pred CCCCHHHHHHH-HccCchhehHHHHHCCCC-CHHHHHHH
Confidence 99999999875 567999999999976644 34555443
|
| >1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1 | Back alignment and structure |
|---|
Probab=98.33 E-value=8.8e-07 Score=78.65 Aligned_cols=84 Identities=15% Similarity=0.127 Sum_probs=64.6
Q ss_pred HHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHH
Q 020423 219 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRA 298 (326)
Q Consensus 219 a~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRa 298 (326)
++.+++.|+|+|+++..... +. ..+..++.++++++.. ++||+++|+|.++++++++++.|||+|.++++
T Consensus 39 a~~~~~~G~d~i~v~~~~~~--~~-------~~~~~~~~i~~i~~~~-~ipvi~~g~i~~~~~~~~~~~~Gad~V~i~~~ 108 (253)
T 1h5y_A 39 AVRYEEEGADEIAILDITAA--PE-------GRATFIDSVKRVAEAV-SIPVLVGGGVRSLEDATTLFRAGADKVSVNTA 108 (253)
T ss_dssp HHHHHHTTCSCEEEEECCCC--TT-------THHHHHHHHHHHHHHC-SSCEEEESSCCSHHHHHHHHHHTCSEEEESHH
T ss_pred HHHHHHcCCCEEEEEeCCcc--cc-------CCcccHHHHHHHHHhc-CCCEEEECCCCCHHHHHHHHHcCCCEEEEChH
Confidence 45567899999999864321 00 0112366777777765 89999999999999999999999999999999
Q ss_pred HHhCCchhHHhHHH
Q 020423 299 AYQNPWYTLGHVDT 312 (326)
Q Consensus 299 ll~dP~l~~~~i~~ 312 (326)
++.+|+++.+.++.
T Consensus 109 ~~~~~~~~~~~~~~ 122 (253)
T 1h5y_A 109 AVRNPQLVALLARE 122 (253)
T ss_dssp HHHCTHHHHHHHHH
T ss_pred HhhCcHHHHHHHHH
Confidence 99999965554443
|
| >1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2 | Back alignment and structure |
|---|
Probab=98.33 E-value=2.5e-06 Score=75.68 Aligned_cols=161 Identities=17% Similarity=0.237 Sum_probs=99.9
Q ss_pred EEEEecCCCHHHHHHHHHHHHHCCCCEEEecCC--CCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccC
Q 020423 127 IVLQIGGSNLDNLAKATELANAYNYDEINLNCG--CPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIG 204 (326)
Q Consensus 127 iivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g--~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g 204 (326)
++..|...+...+.+..+.+.++|+|.+++-.- .-.++ . .+| .++++++|+.++.|+.+-+-..
T Consensus 7 i~psila~D~~~l~~~i~~~~~~Gad~ihldi~DG~fvp~-~---~~g----------~~~v~~lr~~~~~~~~vhlmv~ 72 (230)
T 1tqj_A 7 VAPSILSADFSRLGEEIKAVDEAGADWIHVDVMDGRFVPN-I---TIG----------PLIVDAIRPLTKKTLDVHLMIV 72 (230)
T ss_dssp EEEBGGGSCGGGHHHHHHHHHHTTCSEEEEEEEBSSSSSC-B---CBC----------HHHHHHHGGGCCSEEEEEEESS
T ss_pred EEEEeeecCHhHHHHHHHHHHHcCCCEEEEEEEecCCCcc-h---hhh----------HHHHHHHHhhcCCcEEEEEEcc
Confidence 667777778888999999999999999877541 11111 1 123 3778888887777887655442
Q ss_pred CCCCccHHHHHHHHHHHhhhCCccEEEEecC--Ccc-----------cC---C--------------------------C
Q 020423 205 VDDHDSYNQLCDFIYKVSSLSPTRHFIIHSR--KAL-----------LN---G--------------------------I 242 (326)
Q Consensus 205 ~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~--~~~-----------~~---g--------------------------~ 242 (326)
+.+.+ + +.+.++|+|.+++|.. ... .+ | .
T Consensus 73 --dp~~~------i-~~~~~aGadgv~vh~e~~~~~~~~~~~~~i~~~g~~~gv~~~p~t~~e~~~~~~~~~D~v~~msv 143 (230)
T 1tqj_A 73 --EPEKY------V-EDFAKAGADIISVHVEHNASPHLHRTLCQIRELGKKAGAVLNPSTPLDFLEYVLPVCDLILIMSV 143 (230)
T ss_dssp --SGGGT------H-HHHHHHTCSEEEEECSTTTCTTHHHHHHHHHHTTCEEEEEECTTCCGGGGTTTGGGCSEEEEESS
T ss_pred --CHHHH------H-HHHHHcCCCEEEECcccccchhHHHHHHHHHHcCCcEEEEEeCCCcHHHHHHHHhcCCEEEEEEe
Confidence 21111 1 1223467777777754 110 00 0 0
Q ss_pred Cc-CCcCCCCCccHHHHHHHHhcC----CCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhCCchhHHhHHH
Q 020423 243 SP-AENRTIPPLKYEYYYALLRDF----PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDT 312 (326)
Q Consensus 243 ~~-~~~~~~~~~~~~~i~~i~~~~----~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~dP~l~~~~i~~ 312 (326)
.+ .......+...+.++++++.. .++||.+-|||+. +.+.++.+.|||++.+|++++..++ ....+++
T Consensus 144 ~pg~ggq~~~~~~~~~i~~lr~~~~~~~~~~~I~v~GGI~~-~~~~~~~~aGad~vvvGSai~~a~d-~~~~~~~ 216 (230)
T 1tqj_A 144 NPGFGGQSFIPEVLPKIRALRQMCDERGLDPWIEVDGGLKP-NNTWQVLEAGANAIVAGSAVFNAPN-YAEAIAG 216 (230)
T ss_dssp CC----CCCCGGGHHHHHHHHHHHHHHTCCCEEEEESSCCT-TTTHHHHHHTCCEEEESHHHHTSSC-HHHHHHH
T ss_pred ccccCCccCcHHHHHHHHHHHHHHHhcCCCCcEEEECCcCH-HHHHHHHHcCCCEEEECHHHHCCCC-HHHHHHH
Confidence 00 000111223355666555432 2799999999987 9999999999999999999998777 3444433
|
| >1viz_A PCRB protein homolog; structural genomics, unknown function; 1.85A {Bacillus subtilis} SCOP: c.1.4.1 | Back alignment and structure |
|---|
Probab=98.33 E-value=1.4e-06 Score=77.68 Aligned_cols=155 Identities=18% Similarity=0.094 Sum_probs=94.8
Q ss_pred HHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEe------ccCCCCC-----
Q 020423 140 AKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKC------RIGVDDH----- 208 (326)
Q Consensus 140 ~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~------r~g~~~~----- 208 (326)
.+.++.+.++|+|.||+-.+ . | -+.+.+.++++++|+ .+.|+.+=. ..|.+-.
T Consensus 23 ~~~~~~l~~~GaD~ielG~S---------~--G----vt~~~~~~~v~~ir~-~~~Pivlm~y~~n~i~~G~dg~iiPdL 86 (240)
T 1viz_A 23 DEQLEILCESGTDAVIIGGS---------D--G----VTEDNVLRMMSKVRR-FLVPCVLEVSAIEAIVPGFDLYFIPSV 86 (240)
T ss_dssp HHHHHHHHTSCCSEEEECC-------------------CHHHHHHHHHHHTT-SSSCEEEECSCGGGCCSCCSEEEEEEE
T ss_pred HHHHHHHHHcCCCEEEECCC---------C--C----CCHHHHHHHHHHhhC-cCCCEEEecCccccccCCCCEEEEccc
Confidence 44567888999999999761 1 3 457789999999998 888987621 1121110
Q ss_pred --ccHHHHH-HHHHHHhhhCC-----ccEEE----Ee-cCCc---c--------------------c--CCCCcCCcCCC
Q 020423 209 --DSYNQLC-DFIYKVSSLSP-----TRHFI----IH-SRKA---L--------------------L--NGISPAENRTI 250 (326)
Q Consensus 209 --~~~~e~~-~~ia~~le~~G-----vd~I~----v~-~~~~---~--------------------~--~g~~~~~~~~~ 250 (326)
++-+++. ..-...+++.| ++.|- +- ..+. . . .++...+...
T Consensus 87 p~ee~~~~~~g~~~~a~~~~g~~~~~l~~i~~gy~l~~P~~~~~rl~~~d~~~~~~~~~~~a~~g~~~~~~~VYl~s~G- 165 (240)
T 1viz_A 87 LNSKNADWIVGMHQKAMKEYGELMSMEEIVAEGYCIANPDCKAAALTEADADLNMDDIVAYARVSELLQLPIFYLEYSG- 165 (240)
T ss_dssp TTBSSGGGTTHHHHHHHHHCHHHHHHSCEEEEEEEECCTTSHHHHHTTBCCCCCHHHHHHHHHHHHHTTCSEEEEECTT-
T ss_pred CcccChhhhcchhHHHHHHcCCCCcceeeeecccEEECCCCceEEeeccCCCCCHHHHHHHHHhCcccCCCEEEEeCCC-
Confidence 0011110 00023345677 77665 31 1100 0 0 0110000001
Q ss_pred CCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhCCchhHHhHHH
Q 020423 251 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDT 312 (326)
Q Consensus 251 ~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~dP~l~~~~i~~ 312 (326)
.+...+.++++++...++||+..|||++++++.++++ |||+|.+|+++..+|+.+.+.++.
T Consensus 166 ~~~~~~~i~~i~~~~~~~Pv~vGgGI~t~e~a~~~~~-gAd~VIVGSa~v~~~~~~~~~v~~ 226 (240)
T 1viz_A 166 VLGDIEAVKKTKAVLETSTLFYGGGIKDAETAKQYAE-HADVIVVGNAVYEDFDRALKTVAA 226 (240)
T ss_dssp SCCCHHHHHHHHHTCSSSEEEEESSCCSHHHHHHHHT-TCSEEEECTHHHHCHHHHHTHHHH
T ss_pred ccChHHHHHHHHHhcCCCCEEEEeccCCHHHHHHHHh-CCCEEEEChHHHhCHHHHHHHHHH
Confidence 1335778888776533899999999999999999999 999999999999999933444543
|
| >2zad_A Muconate cycloisomerase; muconate lactonizing enzyme (MLE), TM0006, struct genomics, NPPSFA; HET: 1PE; 1.60A {Thermotoga maritima} PDB: 3deq_A 3der_A* 3des_A* 3dfy_A | Back alignment and structure |
|---|
Probab=98.32 E-value=1.6e-05 Score=74.44 Aligned_cols=134 Identities=13% Similarity=0.100 Sum_probs=98.4
Q ss_pred ecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCC--CcEEEEeccCCCCC
Q 020423 131 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTN--VPVSVKCRIGVDDH 208 (326)
Q Consensus 131 L~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~--~pv~vK~r~g~~~~ 208 (326)
+...+++++.+.|+++.+.||+.++++.|+ +++...+++++||++ + +++.+....+|
T Consensus 135 ~~~~~~~~~~~~a~~~~~~Gf~~iKik~g~-----------------~~~~d~~~v~avr~~-g~~~~l~vDan~~~--- 193 (345)
T 2zad_A 135 VGIDTVENRVKEAKKIFEEGFRVIKIKVGE-----------------NLKEDIEAVEEIAKV-TRGAKYIVDANMGY--- 193 (345)
T ss_dssp ECSCCHHHHHHHHHHHHHTTCSEEEEECCS-----------------CHHHHHHHHHHHHHH-STTCEEEEECTTCS---
T ss_pred ecCCCHHHHHHHHHHHHHcCcCEEEEeecC-----------------CHHHHHHHHHHHHhh-CCCCeEEEECCCCC---
Confidence 444689999999999999999999998753 356667889999987 5 44444433333
Q ss_pred ccHHHHHHHHHHHhhhCCcc--EEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHH
Q 020423 209 DSYNQLCDFIYKVSSLSPTR--HFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAAL 286 (326)
Q Consensus 209 ~~~~e~~~~ia~~le~~Gvd--~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l 286 (326)
+.++..++ .+.+++.|++ +|. . ..++.+++.++++.+.. ++||++.+.+.+++++.+++
T Consensus 194 -~~~~a~~~-~~~l~~~~i~~~~iE----~------------P~~~~~~~~~~~l~~~~-~ipia~dE~~~~~~~~~~~i 254 (345)
T 2zad_A 194 -TQKEAVEF-ARAVYQKGIDIAVYE----Q------------PVRREDIEGLKFVRFHS-PFPVAADESARTKFDVMRLV 254 (345)
T ss_dssp -CHHHHHHH-HHHHHHTTCCCSEEE----C------------CSCTTCHHHHHHHHHHS-SSCEEESTTCCSHHHHHHHH
T ss_pred -CHHHHHHH-HHHHHhcCCCeeeee----C------------CCCcccHHHHHHHHHhC-CCCEEEeCCcCCHHHHHHHH
Confidence 45566664 4567889999 774 1 11234577777877765 89999999999999999999
Q ss_pred HhC-CChhhh--hHHHHhCCc
Q 020423 287 RKG-AHHVMV--GRAAYQNPW 304 (326)
Q Consensus 287 ~~G-aD~V~i--GRall~dP~ 304 (326)
+.| +|.|++ +++-+....
T Consensus 255 ~~~~~d~v~ik~~~GGit~~~ 275 (345)
T 2zad_A 255 KEEAVDYVNIKLMKSGISDAL 275 (345)
T ss_dssp HHTCCSEEEECHHHHHHHHHH
T ss_pred HhCCCCEEEEecccccHHHHH
Confidence 966 999999 665554443
|
| >1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A* | Back alignment and structure |
|---|
Probab=98.28 E-value=2.8e-06 Score=83.85 Aligned_cols=135 Identities=13% Similarity=0.075 Sum_probs=83.1
Q ss_pred HHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC-C-CcEEEEeccCCCCCccHHHHHH
Q 020423 139 LAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-N-VPVSVKCRIGVDDHDSYNQLCD 216 (326)
Q Consensus 139 f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~-~-~pv~vK~r~g~~~~~~~~e~~~ 216 (326)
..+.++.+.++|.+.+.++... | ++..+.+.++.+++.. + .|+.++--. +.++
T Consensus 243 ~~e~~~~l~e~gv~~l~Vd~~~-----------g-----~~~~~~~~i~~lk~~~~~~~~Vi~G~V~------t~~~--- 297 (503)
T 1me8_A 243 FRERVPALVEAGADVLCIDSSD-----------G-----FSEWQKITIGWIREKYGDKVKVGAGNIV------DGEG--- 297 (503)
T ss_dssp HHHHHHHHHHHTCSEEEECCSC-----------C-----CSHHHHHHHHHHHHHHGGGSCEEEEEEC------SHHH---
T ss_pred HHHHHHHHHhhhccceEEeccc-----------C-----cccchhhHHHHHHHhCCCCceEeecccc------CHHH---
Confidence 3444667777799998886431 1 1234566678887775 4 788775322 2222
Q ss_pred HHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCC--------CceEEEeCCCCCHHHHHHHHHh
Q 020423 217 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFP--------DLTFTLNGGINTVDEVNAALRK 288 (326)
Q Consensus 217 ~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~--------~iPVIa~GgI~s~~da~~~l~~ 288 (326)
++.+.++|+|.+.| |..+.... ...............+.++.+... ++|||+.|||.++.|+.++++.
T Consensus 298 --a~~l~~aGad~I~V-g~~~g~~~-~~r~~~~~g~p~~~~l~~v~~~~~~~~~~~~~~ipvia~GGi~~~~di~kAlal 373 (503)
T 1me8_A 298 --FRYLADAGADFIKI-GIGGGSIC-ITREQKGIGRGQATAVIDVVAERNKYFEETGIYIPVCSDGGIVYDYHMTLALAM 373 (503)
T ss_dssp --HHHHHHHTCSEEEE-CSSCSTTC-CSTTTTCCCCCHHHHHHHHHHHHHHHHHHHSEECCEEEESCCCSHHHHHHHHHT
T ss_pred --HHHHHHhCCCeEEe-cccCCcCc-ccccccCCCCchHHHHHHHHHHHHHHhhhcCCCceEEEeCCCCCHHHHHHHHHc
Confidence 22344689999998 43221000 000000111122444444433211 6999999999999999999999
Q ss_pred CCChhhhhHHHHhC
Q 020423 289 GAHHVMVGRAAYQN 302 (326)
Q Consensus 289 GaD~V~iGRall~d 302 (326)
|||+|++||+++..
T Consensus 374 GA~~V~iG~~~~~~ 387 (503)
T 1me8_A 374 GADFIMLGRYFARF 387 (503)
T ss_dssp TCSEEEESHHHHTB
T ss_pred CCCEEEECchhhcc
Confidence 99999999999854
|
| >2yw3_A 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deoxyphosphogluconate aldolase; structural genomics, NPPSFA; 1.67A {Thermus thermophilus} PDB: 2yw4_A | Back alignment and structure |
|---|
Probab=98.28 E-value=1.1e-06 Score=76.62 Aligned_cols=149 Identities=11% Similarity=0.030 Sum_probs=95.1
Q ss_pred CcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcc--------cCCCCccccccCCHHHH--------------
Q 020423 125 HPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKV--------AGHGCFGVSLMLDPKFV-------------- 182 (326)
Q Consensus 125 ~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~--------~r~d~yGgsl~~r~~~l-------------- 182 (326)
.+++.-+.+.+++++.+.++.+.+.|++.||+..-+|.... ...-.||. +. ..+.+
T Consensus 13 ~~ii~vi~~~~~~~~~~~~~~l~~gGv~~iel~~k~~~~~~~i~~~~~~~~~~gag~-vl-~~d~~~~A~~~GAd~v~~~ 90 (207)
T 2yw3_A 13 SRLLPLLTVRGGEDLLGLARVLEEEGVGALEITLRTEKGLEALKALRKSGLLLGAGT-VR-SPKEAEAALEAGAAFLVSP 90 (207)
T ss_dssp HCEEEEECCCSCCCHHHHHHHHHHTTCCEEEEECSSTHHHHHHHHHTTSSCEEEEES-CC-SHHHHHHHHHHTCSEEEES
T ss_pred CCEEEEEeCCCHHHHHHHHHHHHHcCCCEEEEeCCChHHHHHHHHHhCCCCEEEeCe-Ee-eHHHHHHHHHcCCCEEEcC
Confidence 56888888888888889999999999999999876653210 00112332 21 12222
Q ss_pred ---HHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHH
Q 020423 183 ---GEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYY 259 (326)
Q Consensus 183 ---~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~ 259 (326)
.++++..++ .+.++...+ .+.+|..+ . .+.|+|+|.++.... ....+.++
T Consensus 91 ~~d~~v~~~~~~-~g~~~i~G~-------~t~~e~~~----A-~~~Gad~v~~fpa~~--------------~gG~~~lk 143 (207)
T 2yw3_A 91 GLLEEVAALAQA-RGVPYLPGV-------LTPTEVER----A-LALGLSALKFFPAEP--------------FQGVRVLR 143 (207)
T ss_dssp SCCHHHHHHHHH-HTCCEEEEE-------CSHHHHHH----H-HHTTCCEEEETTTTT--------------TTHHHHHH
T ss_pred CCCHHHHHHHHH-hCCCEEecC-------CCHHHHHH----H-HHCCCCEEEEecCcc--------------ccCHHHHH
Confidence 223333222 344443321 12333322 2 357999998854110 01256677
Q ss_pred HHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhCCc
Q 020423 260 ALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW 304 (326)
Q Consensus 260 ~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~dP~ 304 (326)
++++..+++|+++.|||+ ++++.++++.|+++|.+|++++. ++
T Consensus 144 ~l~~~~~~ipvvaiGGI~-~~n~~~~l~aGa~~vavgSai~~-~d 186 (207)
T 2yw3_A 144 AYAEVFPEVRFLPTGGIK-EEHLPHYAALPNLLAVGGSWLLQ-GN 186 (207)
T ss_dssp HHHHHCTTCEEEEBSSCC-GGGHHHHHTCSSBSCEEESGGGS-SC
T ss_pred HHHhhCCCCcEEEeCCCC-HHHHHHHHhCCCcEEEEehhhhC-CC
Confidence 777666689999999996 79999999999999999999887 44
|
| >2f6u_A GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate synthase; non-canonical TIM-barrel, prenyltransferase, archaeal lipid synthesis, dimer; HET: CIT; 1.55A {Archaeoglobus fulgidus} SCOP: c.1.4.1 PDB: 2f6x_A* | Back alignment and structure |
|---|
Probab=98.27 E-value=3.6e-06 Score=74.63 Aligned_cols=53 Identities=19% Similarity=0.274 Sum_probs=46.2
Q ss_pred ccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhCCchh
Q 020423 253 LKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYT 306 (326)
Q Consensus 253 ~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~dP~l~ 306 (326)
...+.++++++...++||+..|||++++++.++++ |||+|.+|+++..+|.-+
T Consensus 176 ~~~~~i~~i~~~~~~~Pv~vGgGI~s~e~a~~~~~-gAd~VIVGSa~v~~~~~~ 228 (234)
T 2f6u_A 176 GNPELVAEVKKVLDKARLFYGGGIDSREKAREMLR-YADTIIVGNVIYEKGIDA 228 (234)
T ss_dssp CCHHHHHHHHHHCSSSEEEEESCCCSHHHHHHHHH-HSSEEEECHHHHHHCHHH
T ss_pred chHHHHHHHHHhCCCCCEEEEecCCCHHHHHHHHh-CCCEEEEChHHHhCHHHH
Confidence 34778888876643899999999999999999999 999999999999998743
|
| >2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1 | Back alignment and structure |
|---|
Probab=98.26 E-value=5.1e-06 Score=81.62 Aligned_cols=130 Identities=13% Similarity=0.065 Sum_probs=79.7
Q ss_pred HHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHHH
Q 020423 141 KATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYK 220 (326)
Q Consensus 141 ~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia~ 220 (326)
+.+..+.++|.|.+.+... || . .....+.++.+++..+.|+.+|--. +.++ ++
T Consensus 231 ~~a~~l~~~gvd~lvvdta------------~G---~-~~~~L~~I~~l~~~~~vpvi~k~v~------~~~~-----a~ 283 (486)
T 2cu0_A 231 KRAIELDKAGVDVIVVDTA------------HA---H-NLKAIKSMKEMRQKVDADFIVGNIA------NPKA-----VD 283 (486)
T ss_dssp HHHHHHHHTTCSEEEEECS------------CC---C-CHHHHHHHHHHHHTCCSEEEEEEEC------CHHH-----HT
T ss_pred HHHHHHHHhcCCceEEEec------------CC---c-EeehhhHHHHHHHHhCCccccCCcC------CHHH-----HH
Confidence 4566677888887766420 11 1 2234556777888888999887222 2221 22
Q ss_pred HhhhCCccEEEEecCCcccCCCCc--CCcCCCCC-ccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhH
Q 020423 221 VSSLSPTRHFIIHSRKALLNGISP--AENRTIPP-LKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGR 297 (326)
Q Consensus 221 ~le~~Gvd~I~v~~~~~~~~g~~~--~~~~~~~~-~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGR 297 (326)
.+. |+|.|.+ |.......... ..+ ..+. .....+.++.++. ++|||+.|||.+..|+.+++..|||+|++|+
T Consensus 284 ~l~--G~d~v~v-g~g~g~~~~~r~~~~~-g~~~~~~l~~~~~~~~~~-~vpVia~GGi~~~~di~kalalGA~~v~~g~ 358 (486)
T 2cu0_A 284 DLT--FADAVKV-GIGPGSICTTRIVAGV-GVPQITAVAMVADRAQEY-GLYVIADGGIRYSGDIVKAIAAGADAVMLGN 358 (486)
T ss_dssp TCT--TSSEEEE-CSSCSTTBCHHHHTCC-CCCHHHHHHHHHHHHHHH-TCEEEEESCCCSHHHHHHHHHTTCSEEEEST
T ss_pred Hhh--CCCeEEE-eeeeccceeeeEEeec-CcchHHHHHHHHHHHHHc-CCcEEecCCCCCHHHHHHHHHcCCCceeeCh
Confidence 333 9999999 22110000000 000 1111 1133344555554 8999999999999999999999999999999
Q ss_pred HHHhC
Q 020423 298 AAYQN 302 (326)
Q Consensus 298 all~d 302 (326)
+++..
T Consensus 359 ~~~~~ 363 (486)
T 2cu0_A 359 LLAGT 363 (486)
T ss_dssp TTTTB
T ss_pred hhhcC
Confidence 99864
|
| >1vc4_A Indole-3-glycerol phosphate synthase; lyase, tryptophan biosynthesis, riken structural genomics/PR initiative, RSGI, structural genomics; 1.80A {Thermus thermophilus} SCOP: c.1.2.4 | Back alignment and structure |
|---|
Probab=98.26 E-value=6.6e-06 Score=74.03 Aligned_cols=56 Identities=16% Similarity=0.067 Sum_probs=44.0
Q ss_pred HHHHHHHHhcCC----CceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhCCchhHHhHHH
Q 020423 255 YEYYYALLRDFP----DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDT 312 (326)
Q Consensus 255 ~~~i~~i~~~~~----~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~dP~l~~~~i~~ 312 (326)
++.+.++.+..+ ++|+|+.|||.|++|+.++.+ |+|+|.||++++..++ ....+++
T Consensus 192 l~~~~~L~~~i~~~~~~~~vIAegGI~s~~dv~~l~~-Ga~gvlVGsAl~~~~d-~~~~~~~ 251 (254)
T 1vc4_A 192 LETAPRLGRLARKRGFGGVLVAESGYSRKEELKALEG-LFDAVLIGTSLMRAPD-LEAALRE 251 (254)
T ss_dssp TTHHHHHHHHHHHTTCCSEEEEESCCCSHHHHHTTTT-TCSEEEECHHHHTSSC-HHHHHHH
T ss_pred HHHHHHHHHhCccccCCCeEEEEcCCCCHHHHHHHHc-CCCEEEEeHHHcCCCC-HHHHHHH
Confidence 444444444432 689999999999999999999 9999999999999888 3444443
|
| >2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.24 E-value=2.1e-05 Score=71.04 Aligned_cols=156 Identities=15% Similarity=0.120 Sum_probs=89.7
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCC-----------CccccccCCHHHHHHHHHHHHhcC-CCcEEEEe
Q 020423 134 SNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHG-----------CFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKC 201 (326)
Q Consensus 134 ~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d-----------~yGgsl~~r~~~l~eiv~avr~~~-~~pv~vK~ 201 (326)
.+.+...+.++.+.++|+|.|||.. |.......+ ..| -+.+.+.++++++|+.+ +.|+.+ +
T Consensus 28 p~~~~~~~~~~~l~~~G~D~IElG~--P~sdP~adgp~i~~a~~~al~~G----~~~~~~~~~v~~ir~~~~~~Pi~~-m 100 (262)
T 2ekc_A 28 PDYETSLKAFKEVLKNGTDILEIGF--PFSDPVADGPTIQVAHEVALKNG----IRFEDVLELSETLRKEFPDIPFLL-M 100 (262)
T ss_dssp SCHHHHHHHHHHHHHTTCSEEEEEC--CCSCCTTSCHHHHHHHHHHHHTT----CCHHHHHHHHHHHHHHCTTSCEEE-E
T ss_pred CChHHHHHHHHHHHHcCCCEEEECC--CCCCcccccHHHHHHHHHHHHcC----CCHHHHHHHHHHHHhhcCCCCEEE-E
Confidence 4567889999999999999999964 322100000 012 24566788999999988 889877 2
Q ss_pred ccCCCCCccHHHHHHHHHHHhhhCCccEEEEecC--------------------------Cc------------------
Q 020423 202 RIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSR--------------------------KA------------------ 237 (326)
Q Consensus 202 r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~--------------------------~~------------------ 237 (326)
+..+......+.+++ +.+.++|+|.+++..- +.
T Consensus 101 --~y~n~v~~~g~~~f~-~~~~~aG~dgvii~dl~~ee~~~~~~~~~~~gl~~i~l~~p~t~~~rl~~ia~~a~gfiy~v 177 (262)
T 2ekc_A 101 --TYYNPIFRIGLEKFC-RLSREKGIDGFIVPDLPPEEAEELKAVMKKYVLSFVPLGAPTSTRKRIKLICEAADEMTYFV 177 (262)
T ss_dssp --CCHHHHHHHCHHHHH-HHHHHTTCCEEECTTCCHHHHHHHHHHHHHTTCEECCEECTTCCHHHHHHHHHHCSSCEEEE
T ss_pred --ecCcHHHHhhHHHHH-HHHHHcCCCEEEECCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCCCEEEE
Confidence 111000000001111 1122345554443211 00
Q ss_pred ccCCCCcCCcCCCC-CccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhC
Q 020423 238 LLNGISPAENRTIP-PLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN 302 (326)
Q Consensus 238 ~~~g~~~~~~~~~~-~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~d 302 (326)
...|.++... ..+ +...+++.++++.. ++||+..+||.+++++.+ +..|||+|.+|+++...
T Consensus 178 s~~g~TG~~~-~~~~~~~~~~v~~vr~~~-~~pv~vG~GI~t~e~~~~-~~~gADgvIVGSai~~~ 240 (262)
T 2ekc_A 178 SVTGTTGARE-KLPYERIKKKVEEYRELC-DKPVVVGFGVSKKEHARE-IGSFADGVVVGSALVKL 240 (262)
T ss_dssp SSCC----------CHHHHHHHHHHHHHC-CSCEEEESSCCSHHHHHH-HHTTSSEEEECHHHHHH
T ss_pred ecCCccCCCC-CcCcccHHHHHHHHHhhc-CCCEEEeCCCCCHHHHHH-HHcCCCEEEECHHHHhh
Confidence 0001111110 001 11135667776654 899999999999999999 78889999999999865
|
| >3w01_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; HET: PGE; 1.54A {Staphylococcus aureus} PDB: 3w02_A | Back alignment and structure |
|---|
Probab=98.23 E-value=4.5e-06 Score=73.87 Aligned_cols=54 Identities=17% Similarity=0.238 Sum_probs=46.1
Q ss_pred cHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhCCchhHH
Q 020423 254 KYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLG 308 (326)
Q Consensus 254 ~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~dP~l~~~ 308 (326)
+.+.++++++...++||+..|||++++++.++.+ |||+|.+|+++..||..+.+
T Consensus 173 ~~~~v~~ir~~~~~~pv~vGfGI~~~e~a~~~~~-gAD~VVVGSai~~~~~~~~e 226 (235)
T 3w01_A 173 DVSKVQAVSEHLTETQLFYGGGISSEQQATEMAA-IADTIIVGDIIYKDIKKALK 226 (235)
T ss_dssp CHHHHHHHHTTCSSSEEEEESCCCSHHHHHHHHT-TSSEEEECTHHHHCHHHHHH
T ss_pred CHHHHHHHHHhcCCCCEEEECCcCCHHHHHHHHc-CCCEEEECCceecCHHHHHH
Confidence 5778877765533899999999999999999887 99999999999999995443
|
| >2fli_A Ribulose-phosphate 3-epimerase; (beta/alpha)8-barrel, D- xylitol 5-phosphate, isomerase; HET: DX5; 1.80A {Streptococcus pyogenes} SCOP: c.1.2.2 | Back alignment and structure |
|---|
Probab=98.23 E-value=6.3e-06 Score=71.98 Aligned_cols=153 Identities=12% Similarity=0.222 Sum_probs=89.4
Q ss_pred EEEEecCCCHHHHHHHHHHHHHCCCCEEEecC--CC-CCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEecc
Q 020423 127 IVLQIGGSNLDNLAKATELANAYNYDEINLNC--GC-PSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRI 203 (326)
Q Consensus 127 iivQL~g~~~~~f~~aA~~a~~aG~d~Iein~--g~-P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~ 203 (326)
+...+...+..++.+.++.+.+.|.|.+.+-. |+ +. + . .+| .++++++++.++.|+.+-+-.
T Consensus 6 ~~~~i~a~D~~~~~~~~~~~~~~G~~~i~~~~~dg~~~~-~-~---~~g----------~~~i~~i~~~~~~~~~v~l~v 70 (220)
T 2fli_A 6 IAPSILAADYANFASELARIEETDAEYVHIDIMDGQFVP-N-I---SFG----------ADVVASMRKHSKLVFDCHLMV 70 (220)
T ss_dssp EEEBGGGSCGGGHHHHHHHHHHTTCCEEEEEEEBSSSSS-C-B---CBC----------HHHHHHHHTTCCSEEEEEEES
T ss_pred EEEEEEeCCHHHHHHHHHHHHHcCCCEEEEEeecCCCCC-c-c---ccC----------HHHHHHHHHhCCCCEEEEEee
Confidence 45556667788899999999999999977753 22 11 0 0 122 355666777666676665443
Q ss_pred CCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcc-----------cC-----------------------------CCC
Q 020423 204 GVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKAL-----------LN-----------------------------GIS 243 (326)
Q Consensus 204 g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~-----------~~-----------------------------g~~ 243 (326)
. +.... + +.+.++|+|.+++|+.... .+ +..
T Consensus 71 ~--d~~~~------i-~~~~~~gad~v~vh~~~~~~~~~~~~~~~~~g~~i~~~~~~~t~~e~~~~~~~~~d~vl~~~~~ 141 (220)
T 2fli_A 71 V--DPERY------V-EAFAQAGADIMTIHTESTRHIHGALQKIKAAGMKAGVVINPGTPATALEPLLDLVDQVLIMTVN 141 (220)
T ss_dssp S--SGGGG------H-HHHHHHTCSEEEEEGGGCSCHHHHHHHHHHTTSEEEEEECTTSCGGGGGGGTTTCSEEEEESSC
T ss_pred c--CHHHH------H-HHHHHcCCCEEEEccCccccHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHhhCCEEEEEEEC
Confidence 2 21110 1 1223467777766643100 00 000
Q ss_pred -cCCcCCCCCccHHHHHHHHhcC----CCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhCCc
Q 020423 244 -PAENRTIPPLKYEYYYALLRDF----PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW 304 (326)
Q Consensus 244 -~~~~~~~~~~~~~~i~~i~~~~----~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~dP~ 304 (326)
+.+.....+...+.+.++++.. .++||++.|||+ ++++.++++.|+|+|.+||+++..++
T Consensus 142 ~g~~g~~~~~~~~~~i~~~~~~~~~~~~~~~i~v~GGI~-~~~~~~~~~~Gad~vvvGsai~~~~d 206 (220)
T 2fli_A 142 PGFGGQAFIPECLEKVATVAKWRDEKGLSFDIEVDGGVD-NKTIRACYEAGANVFVAGSYLFKASD 206 (220)
T ss_dssp TTCSSCCCCGGGHHHHHHHHHHHHHTTCCCEEEEESSCC-TTTHHHHHHHTCCEEEESHHHHTSSC
T ss_pred CCCcccccCHHHHHHHHHHHHHHHhcCCCceEEEECcCC-HHHHHHHHHcCCCEEEEChHHhCCCC
Confidence 0000011111123344443321 278999999998 89999999999999999999998766
|
| >3rr1_A GALD, putative D-galactonate dehydratase; enolase, magnesium binding site, lyase; 1.95A {Ralstonia pickettii} PDB: 3rra_A | Back alignment and structure |
|---|
Probab=98.21 E-value=2.3e-05 Score=75.14 Aligned_cols=142 Identities=12% Similarity=0.072 Sum_probs=102.7
Q ss_pred CcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC--CCcEEEEec
Q 020423 125 HPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCR 202 (326)
Q Consensus 125 ~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~--~~pv~vK~r 202 (326)
-|+-..+.+.+++++++.++.+.+.||+.+-+ .|++.... . ....+++...+.+++||+++ ++++.+...
T Consensus 115 v~~y~~~~~~~~e~~~~~a~~~~~~G~~~iKl-~G~~~~~~--~-----~~~~~~~~d~e~v~avR~avG~d~~L~vDaN 186 (405)
T 3rr1_A 115 MRTYSWVGGDRPADVIAGMKALQAGGFDHFKL-NGCEEMGI--I-----DTSRAVDAAVARVAEIRSAFGNTVEFGLDFH 186 (405)
T ss_dssp EEEEEECCCSSHHHHHHHHHHHHHTTCCEEEE-ESCCSSSC--B-----CSHHHHHHHHHHHHHHHHTTGGGSEEEEECC
T ss_pred eeeeEeCCCCCHHHHHHHHHHHHHcCCCEEEE-ecCCcccc--c-----ccchhHHHHHHHHHHHHHHhCCCceEEEECC
Confidence 45555666778999999999999999999999 77654211 0 11134566788999999988 567777655
Q ss_pred cCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHH
Q 020423 203 IGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEV 282 (326)
Q Consensus 203 ~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da 282 (326)
.+|+ .++..+ +++.+++.|+++|. .+ .++.+++.++++++. .++||++.+.+.+++++
T Consensus 187 ~~~~----~~~A~~-~~~~L~~~~i~~iE----eP------------~~~~d~~~~~~l~~~-~~iPIa~dE~i~~~~~~ 244 (405)
T 3rr1_A 187 GRVS----APMAKV-LIKELEPYRPLFIE----EP------------VLAEQAETYARLAAH-THLPIAAGERMFSRFDF 244 (405)
T ss_dssp SCBC----HHHHHH-HHHHHGGGCCSCEE----CS------------SCCSSTHHHHHHHTT-CSSCEEECTTCCSHHHH
T ss_pred CCCC----HHHHHH-HHHHHHhcCCCEEE----CC------------CCcccHHHHHHHHhc-CCCCEEecCCcCCHHHH
Confidence 5543 445555 45567889999885 11 123346777777766 48999999999999999
Q ss_pred HHHHHhC-CChhhhh
Q 020423 283 NAALRKG-AHHVMVG 296 (326)
Q Consensus 283 ~~~l~~G-aD~V~iG 296 (326)
.++++.| +|.|++-
T Consensus 245 ~~~l~~~a~d~v~~d 259 (405)
T 3rr1_A 245 KRVLEAGGVSILQPD 259 (405)
T ss_dssp HHHHHHCCCSEECCB
T ss_pred HHHHHHhCCCeEEEC
Confidence 9999865 8888873
|
| >3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin biosynthesis, TIM barrel, transferase; 2.35A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.20 E-value=1.4e-05 Score=71.39 Aligned_cols=75 Identities=16% Similarity=0.059 Sum_probs=55.0
Q ss_pred hhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcC-CCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHh
Q 020423 223 SLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF-PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 301 (326)
Q Consensus 223 e~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~-~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~ 301 (326)
.+.|+|+|-+......... +..++..++.+.++.+.. .++||++-||| +++++.++++.|||+|.++++++.
T Consensus 152 ~~~GaDyI~vgpvf~T~tK------~~~~~~gl~~l~~~~~~~~~~iPvvAiGGI-~~~ni~~~~~aGa~gvav~sai~~ 224 (243)
T 3o63_A 152 AAGDADYFCVGPCWPTPTK------PGRAAPGLGLVRVAAELGGDDKPWFAIGGI-NAQRLPAVLDAGARRIVVVRAITS 224 (243)
T ss_dssp HHSSCSEEEECCSSCCCC-----------CCCHHHHHHHHTC---CCCEEEESSC-CTTTHHHHHHTTCCCEEESHHHHT
T ss_pred hhCCCCEEEEcCccCCCCC------CCcchhhHHHHHHHHHhccCCCCEEEecCC-CHHHHHHHHHcCCCEEEEeHHHhC
Confidence 3589999998754321100 011234578888777653 48999999999 899999999999999999999998
Q ss_pred CCc
Q 020423 302 NPW 304 (326)
Q Consensus 302 dP~ 304 (326)
.++
T Consensus 225 a~d 227 (243)
T 3o63_A 225 ADD 227 (243)
T ss_dssp CSS
T ss_pred CCC
Confidence 666
|
| >1sjd_A N-acylamino acid racemase; lyase, isomerase; HET: NPG; 1.87A {Amycolatopsis SP} SCOP: c.1.11.2 d.54.1.1 PDB: 1sja_A* 1sjb_A* 1sjc_A* | Back alignment and structure |
|---|
Probab=98.17 E-value=9.3e-06 Score=76.78 Aligned_cols=120 Identities=13% Similarity=0.066 Sum_probs=88.7
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCC--CcEEEEeccCCCCCccH
Q 020423 134 SNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTN--VPVSVKCRIGVDDHDSY 211 (326)
Q Consensus 134 ~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~--~pv~vK~r~g~~~~~~~ 211 (326)
.+++++.+.|+++.+.||+.++++.+ | ++..+++++||++++ +++.+....+|+.
T Consensus 140 ~~~~~~~~~a~~~~~~Gf~~vKik~~-~------------------~~~~e~v~avr~~~g~~~~l~vDan~~~~~---- 196 (368)
T 1sjd_A 140 DTIPQLLDVVGGYLDEGYVRIKLKIE-P------------------GWDVEPVRAVRERFGDDVLLQVDANTAYTL---- 196 (368)
T ss_dssp SCHHHHHHHHHHHHHHTCSEEEEECB-T------------------TBSHHHHHHHHHHHCTTSEEEEECTTCCCG----
T ss_pred CCHHHHHHHHHHHHHhCccEEEEecC-c------------------hhHHHHHHHHHHhcCCCceEEEeccCCCCH----
Confidence 47999999999999999999999862 1 233577888888774 5565555445543
Q ss_pred HHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhC-C
Q 020423 212 NQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKG-A 290 (326)
Q Consensus 212 ~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~G-a 290 (326)
++ .+ +.+.+++.|+++|. . ..++.+++..+++.++. ++||++.+.+.+++++.++++.| +
T Consensus 197 ~~-~~-~~~~l~~~~i~~iE----~------------P~~~~~~~~~~~l~~~~-~ipIa~dE~~~~~~~~~~~i~~~~~ 257 (368)
T 1sjd_A 197 GD-AP-QLARLDPFGLLLIE----Q------------PLEEEDVLGHAELARRI-QTPICLDESIVSARAAADAIKLGAV 257 (368)
T ss_dssp GG-HH-HHHTTGGGCCSEEE----C------------CSCTTCHHHHHHHHTTC-SSCEEESTTCCSHHHHHHHHHTTCC
T ss_pred HH-HH-HHHHHHhcCCCeEe----C------------CCChhhHHHHHHHHHhC-CCCEEECCCcCCHHHHHHHHHcCCC
Confidence 34 44 34567889999874 1 11234577777777664 89999999999999999999966 8
Q ss_pred Chhhh
Q 020423 291 HHVMV 295 (326)
Q Consensus 291 D~V~i 295 (326)
|.|++
T Consensus 258 d~v~i 262 (368)
T 1sjd_A 258 QIVNI 262 (368)
T ss_dssp SEEEE
T ss_pred CEEEe
Confidence 88887
|
| >3sbf_A Mandelate racemase / muconate lactonizing enzyme; enolase fold, acid sugar dehydratase, D-araninonate, isomera; HET: EPE D8T; 1.50A {Vibrionales bacterium swat-3} PDB: 3r25_A 3dfh_A 4gis_A 4gir_A 4ggh_A 3gy1_A | Back alignment and structure |
|---|
Probab=98.17 E-value=2.7e-05 Score=74.57 Aligned_cols=151 Identities=10% Similarity=0.045 Sum_probs=104.2
Q ss_pred cEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCccc------CCCCcccccc--CCHHHHHHHHHHHHhcC--CC
Q 020423 126 PIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVA------GHGCFGVSLM--LDPKFVGEAMSVIAANT--NV 195 (326)
Q Consensus 126 piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~------r~d~yGgsl~--~r~~~l~eiv~avr~~~--~~ 195 (326)
|+-..+.+.+++++++.++.+.+.||..+-++.|.+..... .... |..+. ...+...+++++||+++ ++
T Consensus 124 ~~y~~~~~~~~e~~~~~a~~~~~~G~~~~K~KvG~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~d~~~v~avR~a~G~d~ 202 (401)
T 3sbf_A 124 PVYTHATSDTMEGIYDLVEGFLEKGYKHIRCQLGFYGGVPTDLHTTQNPTE-GSYYDQDQYMDNTLTMFKSLREKYGNQF 202 (401)
T ss_dssp EEEEEEEESSHHHHHHHHHHHHHTTCCEEEEEESCCCSCGGGSCCCSSCCS-SEECCHHHHHHHHHHHHHHHHHHHTTSS
T ss_pred eEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEeeccCCcccccccccccccc-cccccchHHHHHHHHHHHHHHHHcCCCC
Confidence 44445556789999999999999999999999886421100 0000 21111 12577888999999987 56
Q ss_pred cEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCC
Q 020423 196 PVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGG 275 (326)
Q Consensus 196 pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~Gg 275 (326)
++.+....+|+ .++..+ +++.+++.|+++|. .+ .++.+++.++++++. .++||++.+.
T Consensus 203 ~l~vDan~~~~----~~~A~~-~~~~L~~~~i~~iE----qP------------~~~~~~~~~~~l~~~-~~iPIa~dE~ 260 (401)
T 3sbf_A 203 HILHDVHERLF----PNQAIQ-FAKEVEQYKPYFIE----DI------------LPPNQTEWLDNIRSQ-SSVSLGLGEL 260 (401)
T ss_dssp EEEEECTTCSC----HHHHHH-HHHHHGGGCCSCEE----CS------------SCTTCGGGHHHHHTT-CCCCEEECTT
T ss_pred EEEEECCCCCC----HHHHHH-HHHHHHhcCCCEEE----CC------------CChhHHHHHHHHHhh-CCCCEEeCCc
Confidence 77777666654 445555 45567888998885 11 122345666677665 4899999999
Q ss_pred CCCHHHHHHHHHhC-CChhhhhHHH
Q 020423 276 INTVDEVNAALRKG-AHHVMVGRAA 299 (326)
Q Consensus 276 I~s~~da~~~l~~G-aD~V~iGRal 299 (326)
+.+++++.++++.| +|.|++--.-
T Consensus 261 ~~~~~~~~~~i~~~~~d~v~~k~~~ 285 (401)
T 3sbf_A 261 FNNPEEWKSLIANRRIDFIRCHVSQ 285 (401)
T ss_dssp CCSHHHHHHHHHTTCCSEECCCGGG
T ss_pred cCCHHHHHHHHhcCCCCEEecCccc
Confidence 99999999999965 8988875443
|
| >1ujp_A Tryptophan synthase alpha chain; riken structural genomics/P initiative, RSGI, structural genomics, lyase; HET: CIT; 1.34A {Thermus thermophilus} SCOP: c.1.2.4 PDB: 1wxj_A* | Back alignment and structure |
|---|
Probab=98.17 E-value=1.4e-05 Score=72.61 Aligned_cols=155 Identities=15% Similarity=0.132 Sum_probs=86.5
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCcccccc----------CCHHHHHHHHHHHHhcCCCcEEEEecc
Q 020423 134 SNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLM----------LDPKFVGEAMSVIAANTNVPVSVKCRI 203 (326)
Q Consensus 134 ~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~----------~r~~~l~eiv~avr~~~~~pv~vK~r~ 203 (326)
.+.+...+.++.+.++ +|.|||.. |...... | |-... -+.+.+.++++++|+.++.|+.+ +
T Consensus 27 P~~~~~~~~~~~l~~~-aD~IElG~--PfsdP~a-d--Gp~Iq~a~~~Al~~G~~~~~~~~~v~~ir~~~~~Pii~-m-- 97 (271)
T 1ujp_A 27 PSREGFLQAVEEVLPY-ADLLEIGL--PYSDPLG-D--GPVIQRASELALRKGMSVQGALELVREVRALTEKPLFL-M-- 97 (271)
T ss_dssp SCHHHHHHHHHHHGGG-CSSEEEEC--CCCC-------CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCCSCEEE-E--
T ss_pred CChHHHHHHHHHHHhc-CCEEEECC--CCCCccc-c--cHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCEEE-E--
Confidence 3557778888888888 99999954 3321110 0 11110 35566789999999888899877 2
Q ss_pred CCCCCccHHHHHHHHHHHhhhCCccEEEEecC-------------------------Cc-------------------cc
Q 020423 204 GVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSR-------------------------KA-------------------LL 239 (326)
Q Consensus 204 g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~-------------------------~~-------------------~~ 239 (326)
+..+........+++. .+.++|+|.+.+-.- +. ..
T Consensus 98 ~y~n~v~~~g~~~f~~-~~~~aG~dGviv~Dl~~ee~~~~~~~~~~~gl~~i~liap~s~~eri~~ia~~~~gfiy~vs~ 176 (271)
T 1ujp_A 98 TYLNPVLAWGPERFFG-LFKQAGATGVILPDLPPDEDPGLVRLAQEIGLETVFLLAPTSTDARIATVVRHATGFVYAVSV 176 (271)
T ss_dssp CCHHHHHHHCHHHHHH-HHHHHTCCEEECTTCCGGGCHHHHHHHHHHTCEEECEECTTCCHHHHHHHHTTCCSCEEEECC
T ss_pred ecCcHHHHhhHHHHHH-HHHHcCCCEEEecCCCHHHHHHHHHHHHHcCCceEEEeCCCCCHHHHHHHHHhCCCCEEEEec
Confidence 1111000000111111 122345554433111 00 00
Q ss_pred CCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhC
Q 020423 240 NGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN 302 (326)
Q Consensus 240 ~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~d 302 (326)
.|.++... ..+....+++.++++. .++||++.|||++++++.++ .|||+|.||+++...
T Consensus 177 ~G~TG~~~-~~~~~~~~~v~~vr~~-~~~Pv~vGfGI~t~e~a~~~--~~ADgVIVGSAi~~~ 235 (271)
T 1ujp_A 177 TGVTGMRE-RLPEEVKDLVRRIKAR-TALPVAVGFGVSGKATAAQA--AVADGVVVGSALVRA 235 (271)
T ss_dssp -------------CCHHHHHHHHTT-CCSCEEEESCCCSHHHHHHH--TTSSEEEECHHHHHH
T ss_pred CcccCCCC-CCCccHHHHHHHHHhh-cCCCEEEEcCCCCHHHHHHh--cCCCEEEEChHHhcc
Confidence 01112111 1111224677777655 59999999999999999996 899999999999864
|
| >1rpx_A Protein (ribulose-phosphate 3-epimerase); chloroplast, calvin cycle, oxidative pentose PH pathway; 2.30A {Solanum tuberosum} SCOP: c.1.2.2 | Back alignment and structure |
|---|
Probab=98.16 E-value=5.8e-05 Score=66.41 Aligned_cols=142 Identities=15% Similarity=0.183 Sum_probs=88.5
Q ss_pred CCcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCC--CCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEe
Q 020423 124 QHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCG--CPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKC 201 (326)
Q Consensus 124 ~~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g--~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~ 201 (326)
+.|+.+-++-++++++.+. +.++|+|+|.+|.. .+ .. ..+.++.+++. +..+.+-+
T Consensus 68 ~~~~~v~l~vnd~~~~v~~---~~~~Gad~v~vh~~~~~~---------------~~---~~~~~~~~~~~-g~~ig~~~ 125 (230)
T 1rpx_A 68 DLPLDVHLMIVEPDQRVPD---FIKAGADIVSVHCEQSST---------------IH---LHRTINQIKSL-GAKAGVVL 125 (230)
T ss_dssp CSCEEEEEESSSHHHHHHH---HHHTTCSEEEEECSTTTC---------------SC---HHHHHHHHHHT-TSEEEEEE
T ss_pred CCcEEEEEEecCHHHHHHH---HHHcCCCEEEEEecCccc---------------hh---HHHHHHHHHHc-CCcEEEEe
Confidence 5688888888887654444 46689999999863 21 01 23455555543 56666666
Q ss_pred ccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcC----CCceEEEeCCCC
Q 020423 202 RIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF----PDLTFTLNGGIN 277 (326)
Q Consensus 202 r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~----~~iPVIa~GgI~ 277 (326)
..+... +. +..+ ..++|+|-+.+......|. ...+...+.++++++.. .++|+++.|||+
T Consensus 126 ~p~t~~-e~-------~~~~--~~~~d~vl~~~~~pg~~g~------~~~~~~~~~i~~l~~~~~~~~~~~pi~v~GGI~ 189 (230)
T 1rpx_A 126 NPGTPL-TA-------IEYV--LDAVDLVLIMSVNPGFGGQ------SFIESQVKKISDLRKICAERGLNPWIEVDGGVG 189 (230)
T ss_dssp CTTCCG-GG-------GTTT--TTTCSEEEEESSCTTCSSC------CCCTTHHHHHHHHHHHHHHHTCCCEEEEESSCC
T ss_pred CCCCCH-HH-------HHHH--HhhCCEEEEEEEcCCCCCc------cccHHHHHHHHHHHHHHHhcCCCceEEEECCCC
Confidence 544221 11 1111 2579998655433211121 11122234444444332 278999999997
Q ss_pred CHHHHHHHHHhCCChhhhhHHHHhCCc
Q 020423 278 TVDEVNAALRKGAHHVMVGRAAYQNPW 304 (326)
Q Consensus 278 s~~da~~~l~~GaD~V~iGRall~dP~ 304 (326)
++.+.++++.|||+|.+||++...++
T Consensus 190 -~~n~~~~~~aGad~vvvgSaI~~a~d 215 (230)
T 1rpx_A 190 -PKNAYKVIEAGANALVAGSAVFGAPD 215 (230)
T ss_dssp -TTTHHHHHHHTCCEEEESHHHHTSSC
T ss_pred -HHHHHHHHHcCCCEEEEChhhhCCCC
Confidence 89999999999999999999998777
|
| >3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A {Mycobacterium gastri} | Back alignment and structure |
|---|
Probab=98.15 E-value=4.4e-05 Score=65.92 Aligned_cols=140 Identities=16% Similarity=0.151 Sum_probs=87.2
Q ss_pred CCcEEEEecCCC-HHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEec
Q 020423 124 QHPIVLQIGGSN-LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCR 202 (326)
Q Consensus 124 ~~piivQL~g~~-~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r 202 (326)
+.|+++-+...+ ++.|. +.+.++|+|+|-+|.... .+-+.++++.+++. +.++.+-+.
T Consensus 53 ~~~i~~~l~~~di~~~~~---~~a~~~Gad~v~vh~~~~-----------------~~~~~~~~~~~~~~-g~~~gv~~~ 111 (207)
T 3ajx_A 53 DKIVFADMKTMDAGELEA---DIAFKAGADLVTVLGSAD-----------------DSTIAGAVKAAQAH-NKGVVVDLI 111 (207)
T ss_dssp TSEEEEEEEECSCHHHHH---HHHHHTTCSEEEEETTSC-----------------HHHHHHHHHHHHHH-TCEEEEECT
T ss_pred CCeEEEEEEecCccHHHH---HHHHhCCCCEEEEeccCC-----------------hHHHHHHHHHHHHc-CCceEEEEe
Confidence 568888776667 66655 567789999999985311 12344555555442 555544332
Q ss_pred cCCCCCccHHHHHHHHHHHhhhCCccEEEEec-CCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHH
Q 020423 203 IGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHS-RKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDE 281 (326)
Q Consensus 203 ~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~-~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~d 281 (326)
+. .+..+..+ .+++.|+|++.++. .+....|. .+.. +.++++.+. ++||++.|||+ +++
T Consensus 112 -s~---~~p~~~~~----~~~~~g~d~v~~~~~~~~~~~g~--------~~~~-~~i~~~~~~--~~pi~v~GGI~-~~~ 171 (207)
T 3ajx_A 112 -GI---EDKATRAQ----EVRALGAKFVEMHAGLDEQAKPG--------FDLN-GLLAAGEKA--RVPFSVAGGVK-VAT 171 (207)
T ss_dssp -TC---SSHHHHHH----HHHHTTCSEEEEECCHHHHTSTT--------CCTH-HHHHHHHHH--TSCEEEESSCC-GGG
T ss_pred -cC---CChHHHHH----HHHHhCCCEEEEEecccccccCC--------CchH-HHHHHhhCC--CCCEEEECCcC-HHH
Confidence 11 12233222 22346899995543 22211121 1222 555555443 68999999997 889
Q ss_pred HHHHHHhCCChhhhhHHHHhCCc
Q 020423 282 VNAALRKGAHHVMVGRAAYQNPW 304 (326)
Q Consensus 282 a~~~l~~GaD~V~iGRall~dP~ 304 (326)
+.++++.|||+|.+||+++..++
T Consensus 172 ~~~~~~aGad~vvvGsaI~~~~d 194 (207)
T 3ajx_A 172 IPAVQKAGAEVAVAGGAIYGAAD 194 (207)
T ss_dssp HHHHHHTTCSEEEESHHHHTSSS
T ss_pred HHHHHHcCCCEEEEeeeccCCCC
Confidence 99999999999999999998766
|
| >4dwd_A Mandelate racemase/muconate lactonizing enzyme, C domain protein; structural genomics, EFI, enzyme function initiative, metal protein; HET: MSE; 1.50A {Paracoccus denitrificans} PDB: 3n4e_A* | Back alignment and structure |
|---|
Probab=98.14 E-value=6.4e-05 Score=71.79 Aligned_cols=139 Identities=9% Similarity=0.076 Sum_probs=103.8
Q ss_pred cEEEEec---CCCHHHHHHHH-HHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC--CCcEEE
Q 020423 126 PIVLQIG---GSNLDNLAKAT-ELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSV 199 (326)
Q Consensus 126 piivQL~---g~~~~~f~~aA-~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~--~~pv~v 199 (326)
|+-..+. ..+++++++.+ +.+.+.||..+-++.|++... ...+++.-.+.+++||+++ +.++.+
T Consensus 127 ~~y~s~~g~~~~~~e~~~~~a~~~~~~~G~~~~KlKvG~~~~~----------~~~~~~~d~~~v~avR~a~g~~~~l~v 196 (393)
T 4dwd_A 127 PCYSSIGGNAARSVDEVVREVARRVEAEQPAAVKIRWDGDRTR----------CDVDIPGDIAKARAVRELLGPDAVIGF 196 (393)
T ss_dssp EEEEEECCCSSSCHHHHHHHHHHHHHHHCCSEEEEECCCCTTC----------CSCCHHHHHHHHHHHHHHHCTTCCEEE
T ss_pred eeEEecCccCCCCHHHHHHHHHHHHHHcCCCEEEEccCCCCcc----------cccCHHHHHHHHHHHHHHhCCCCeEEE
Confidence 4444442 35789999998 888888999999999876421 1246788889999999987 568888
Q ss_pred EeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCH
Q 020423 200 KCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTV 279 (326)
Q Consensus 200 K~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~ 279 (326)
....+|+ .++..+ +.+.+++.|+++|. . ..++.+++.++++++.. ++||.+...+.++
T Consensus 197 DaN~~~~----~~~A~~-~~~~L~~~~i~~iE----q------------P~~~~d~~~~~~l~~~~-~iPIa~dE~~~~~ 254 (393)
T 4dwd_A 197 DANNGYS----VGGAIR-VGRALEDLGYSWFE----E------------PVQHYHVGAMGEVAQRL-DITVSAGEQTYTL 254 (393)
T ss_dssp ECTTCCC----HHHHHH-HHHHHHHTTCSEEE----C------------CSCTTCHHHHHHHHHHC-SSEEEBCTTCCSH
T ss_pred ECCCCCC----HHHHHH-HHHHHHhhCCCEEE----C------------CCCcccHHHHHHHHhhC-CCCEEecCCcCCH
Confidence 7766664 344444 45567889999985 1 11233577777877765 8999999999999
Q ss_pred HHHHHHHHhCCChhhhh
Q 020423 280 DEVNAALRKGAHHVMVG 296 (326)
Q Consensus 280 ~da~~~l~~GaD~V~iG 296 (326)
+++.++++.|+|.|++-
T Consensus 255 ~~~~~~i~~~~d~v~~k 271 (393)
T 4dwd_A 255 QALKDLILSGVRMVQPD 271 (393)
T ss_dssp HHHHHHHHHTCCEECCC
T ss_pred HHHHHHHHcCCCEEEeC
Confidence 99999998669999874
|
| >2tps_A Protein (thiamin phosphate synthase); thiamin biosynthesis, TIM barrel; HET: TPS; 1.25A {Bacillus subtilis} SCOP: c.1.3.1 PDB: 1g4t_A* 3o15_A* 1g6c_A* 1g4e_A* 1g69_A* 3o16_A 1g4s_A* 1g4p_A* 1g67_A* | Back alignment and structure |
|---|
Probab=98.14 E-value=7.1e-05 Score=65.45 Aligned_cols=75 Identities=16% Similarity=0.024 Sum_probs=53.7
Q ss_pred hhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCC-ceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHh
Q 020423 223 SLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPD-LTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 301 (326)
Q Consensus 223 e~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~-iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~ 301 (326)
.+.|+|++.+..-... +..+ ....+..|+.+.++.+.. + +||++.|||+ ++++.++++.|+|+|.+|++++.
T Consensus 133 ~~~g~d~v~~~~v~~t--~~~~---~~~~~~~~~~l~~~~~~~-~~~pvia~GGI~-~~nv~~~~~~Ga~gv~vgs~i~~ 205 (227)
T 2tps_A 133 EEDGADYVGLGPIYPT--ETKK---DTRAVQGVSLIEAVRRQG-ISIPIVGIGGIT-IDNAAPVIQAGADGVSMISAISQ 205 (227)
T ss_dssp HHHTCSEEEECCSSCC--CSSS---SCCCCCTTHHHHHHHHTT-CCCCEEEESSCC-TTTSHHHHHTTCSEEEESHHHHT
T ss_pred HhCCCCEEEECCCcCC--CCCC---CCCCccCHHHHHHHHHhC-CCCCEEEEcCCC-HHHHHHHHHcCCCEEEEhHHhhc
Confidence 3578999987422110 0000 011234578888877665 5 9999999998 99999999999999999999997
Q ss_pred CCc
Q 020423 302 NPW 304 (326)
Q Consensus 302 dP~ 304 (326)
.++
T Consensus 206 ~~d 208 (227)
T 2tps_A 206 AED 208 (227)
T ss_dssp SSC
T ss_pred CCC
Confidence 655
|
| >3r4e_A Mandelate racemase/muconate lactonizing enzyme; enolase fold, mannonate dehydratase, D-mannonate, lyase; HET: CS2; 1.65A {Novosphingobium aromaticivorans} PDB: 2qjj_A 2qjn_A* 2qjm_A* | Back alignment and structure |
|---|
Probab=98.13 E-value=1.4e-05 Score=76.88 Aligned_cols=145 Identities=11% Similarity=0.096 Sum_probs=101.9
Q ss_pred cEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccc--------------------cccCCHHHHHHH
Q 020423 126 PIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGV--------------------SLMLDPKFVGEA 185 (326)
Q Consensus 126 piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGg--------------------sl~~r~~~l~ei 185 (326)
|+-..+.+.+++++++.++.+.+.||..+-++.|+|.... .||. ......+...++
T Consensus 134 ~~y~~~~~~~~e~~~~~a~~~~~~Gf~~~K~k~G~~~~~~----~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~~~d~~~ 209 (418)
T 3r4e_A 134 MVYGHANGSDIAETVEAVGHYIDMGYKAIRAQTGVPGIKD----AYGVGRGKLYYEPADASLPSVTGWDTRKALNYVPKL 209 (418)
T ss_dssp EEEEEEEESSHHHHHHHHHHHHHTTCSEEEEEECCTTC----------------------CCCCEEEECHHHHHHHHHHH
T ss_pred eEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEecCCccccc----cccccccccccccccccccccccccchhHHHHHHHH
Confidence 3433455678999999999999999999999999864221 1221 011125677889
Q ss_pred HHHHHhcC--CCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHh
Q 020423 186 MSVIAANT--NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLR 263 (326)
Q Consensus 186 v~avr~~~--~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~ 263 (326)
+++||+++ ++++.+....+|+ .++..+ +++.+++.|+++|. .+ .++.+++.++++++
T Consensus 210 v~avR~a~G~d~~l~vDaN~~~~----~~~A~~-~~~~L~~~~i~~iE----qP------------~~~~d~~~~~~l~~ 268 (418)
T 3r4e_A 210 FEELRKTYGFDHHLLHDGHHRYT----PQEAAN-LGKMLEPYQLFWLE----DC------------TPAENQEAFRLVRQ 268 (418)
T ss_dssp HHHHHHHHCSSSEEEEECTTCSC----HHHHHH-HHHHHGGGCCSEEE----SC------------SCCSSGGGGHHHHH
T ss_pred HHHHHHHcCCCCeEEEeCCCCCC----HHHHHH-HHHHHHhhCCCEEE----CC------------CCccCHHHHHHHHh
Confidence 99999987 5677777665553 445555 45567889999985 11 12223555666766
Q ss_pred cCCCceEEEeCCCCCHHHHHHHHHhC-CChhhhh
Q 020423 264 DFPDLTFTLNGGINTVDEVNAALRKG-AHHVMVG 296 (326)
Q Consensus 264 ~~~~iPVIa~GgI~s~~da~~~l~~G-aD~V~iG 296 (326)
.. ++||++.+.+.+++++.++++.| +|.|++-
T Consensus 269 ~~-~iPIa~dE~~~~~~~~~~~l~~~a~d~v~~k 301 (418)
T 3r4e_A 269 HT-VTPLAVGEIFNTIWDAKDLIQNQLIDYIRAT 301 (418)
T ss_dssp HC-CSCEEECTTCCSGGGTHHHHHTTCCSEECCC
T ss_pred cC-CCCEEEcCCcCCHHHHHHHHHcCCCCeEecC
Confidence 64 89999999999999999999966 8988874
|
| >4e5t_A Mandelate racemase / muconate lactonizing enzyme, terminal domain protein; aldolase, structural genomics, biology; 2.90A {Labrenzia alexandrii} | Back alignment and structure |
|---|
Probab=98.12 E-value=2.6e-05 Score=74.71 Aligned_cols=136 Identities=15% Similarity=0.072 Sum_probs=98.9
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccc-cCCHHHHHHHHHHHHhcC--CCcEEEEeccCCCCCcc
Q 020423 134 SNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSL-MLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDS 210 (326)
Q Consensus 134 ~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl-~~r~~~l~eiv~avr~~~--~~pv~vK~r~g~~~~~~ 210 (326)
.+++++++.|+.+.+.||..+-++.+++... ..|... ..+++...+.+++||+++ ++++.++...+|+
T Consensus 150 ~~~e~~~~~a~~~~~~G~~~~KlK~g~~~~~-----~~g~~~~~~~~~~d~~~v~avR~a~G~d~~l~vDan~~~~---- 220 (404)
T 4e5t_A 150 NDADMAAEAAAKAVDQGFTAVKFDPAGAYTI-----YDGHQPSLEDLERSEAFCKQIRAAVGTKADLLFGTHGQFT---- 220 (404)
T ss_dssp TCHHHHHHHHHHHHHHTCSEEEECCSCCCBT-----TCSBCCCHHHHHHHHHHHHHHHHHHGGGSEEEECCCSCBC----
T ss_pred CCHHHHHHHHHHHHHcCCCEEeeCCCCCCcc-----cccccccHHHHHHHHHHHHHHHHHcCCCCeEEEeCCCCcC----
Confidence 4789999999999999999999998876421 112111 123667788999999987 4667776555543
Q ss_pred HHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhC-
Q 020423 211 YNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKG- 289 (326)
Q Consensus 211 ~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~G- 289 (326)
.++..+ +++.+++.|+++|. . ..++.+++.+++++++. ++||++.+.+.+++++.++++.|
T Consensus 221 ~~~A~~-~~~~l~~~~i~~iE----e------------P~~~~~~~~~~~l~~~~-~iPIa~dE~~~~~~~~~~~i~~~a 282 (404)
T 4e5t_A 221 VSGAKR-LARRLEAYDPLWFE----E------------PIPPEKPEDMAEVARYT-SIPVATGERLCTKYEFSRVLETGA 282 (404)
T ss_dssp HHHHHH-HHHHHGGGCCSEEE----C------------CSCTTCHHHHHHHHHHC-SSCEEECTTCCHHHHHHHHHHHTC
T ss_pred HHHHHH-HHHHHhhcCCcEEE----C------------CCCcccHHHHHHHHhhC-CCCEEeCCCcCCHHHHHHHHHhCC
Confidence 445555 45667889999985 1 11233577777887775 89999999999999999999966
Q ss_pred CChhhhh
Q 020423 290 AHHVMVG 296 (326)
Q Consensus 290 aD~V~iG 296 (326)
+|.|++-
T Consensus 283 ~d~v~~d 289 (404)
T 4e5t_A 283 ASILQMN 289 (404)
T ss_dssp CSEECCC
T ss_pred CCEEecC
Confidence 8888764
|
| >3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp} | Back alignment and structure |
|---|
Probab=98.10 E-value=2.4e-05 Score=69.92 Aligned_cols=153 Identities=16% Similarity=0.232 Sum_probs=100.1
Q ss_pred CcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecC--CCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC-CCcEEEEe
Q 020423 125 HPIVLQIGGSNLDNLAKATELANAYNYDEINLNC--GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKC 201 (326)
Q Consensus 125 ~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~--g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~-~~pv~vK~ 201 (326)
..+..++...+...+.+..+++.++|+|.+.+-. |.-.++ . .|| + ++++++|+.+ +.|+.+.+
T Consensus 28 ~~i~pSilsaD~~~L~~~i~~l~~~G~d~lHvDVmDg~FVpn-i---t~G------~----~~v~~lr~~~p~~~ldvHL 93 (246)
T 3inp_A 28 IQINPSILSADLARLGDDVKAVLAAGADNIHFDVMDNHYVPN-L---TFG------P----MVLKALRDYGITAGMDVHL 93 (246)
T ss_dssp CEEEEBGGGSCGGGHHHHHHHHHHTTCCCEEEEEEBSSSSSC-B---CCC------H----HHHHHHHHHTCCSCEEEEE
T ss_pred CeeehhhhcCChhhHHHHHHHHHHcCCCEEEEEecCCCcCcc-h---hcC------H----HHHHHHHHhCCCCeEEEEE
Confidence 3477888888888899999999999999665532 322222 1 156 2 5777888887 89999987
Q ss_pred ccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcc-----------c-------------------------------
Q 020423 202 RIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKAL-----------L------------------------------- 239 (326)
Q Consensus 202 r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~-----------~------------------------------- 239 (326)
-.. +.+ +.++ .+.++|+|+|++|.-... .
T Consensus 94 mv~--~p~---~~i~----~~~~aGAd~itvH~Ea~~~~~~~i~~ir~~G~k~Gvalnp~Tp~e~l~~~l~~vD~VlvMs 164 (246)
T 3inp_A 94 MVK--PVD---ALIE----SFAKAGATSIVFHPEASEHIDRSLQLIKSFGIQAGLALNPATGIDCLKYVESNIDRVLIMS 164 (246)
T ss_dssp ECS--SCH---HHHH----HHHHHTCSEEEECGGGCSCHHHHHHHHHTTTSEEEEEECTTCCSGGGTTTGGGCSEEEEEC
T ss_pred eeC--CHH---HHHH----HHHHcCCCEEEEccccchhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHhcCCEEEEee
Confidence 763 222 2222 234578899888743100 0
Q ss_pred --CCCCcCCcCCCCCccHHHHHHHHhc----CCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhCCc
Q 020423 240 --NGISPAENRTIPPLKYEYYYALLRD----FPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW 304 (326)
Q Consensus 240 --~g~~~~~~~~~~~~~~~~i~~i~~~----~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~dP~ 304 (326)
.|..+ ....+..++.++++++. ..+++|.+-|||+ ++.+.++.+.|||.+.+||++...++
T Consensus 165 V~PGfgG---Q~fi~~~l~KI~~lr~~~~~~~~~~~I~VDGGI~-~~ti~~~~~aGAD~~V~GSaIf~a~d 231 (246)
T 3inp_A 165 VNPGFGG---QKFIPAMLDKAKEISKWISSTDRDILLEIDGGVN-PYNIAEIAVCGVNAFVAGSAIFNSDS 231 (246)
T ss_dssp SCTTC-----CCCCTTHHHHHHHHHHHHHHHTSCCEEEEESSCC-TTTHHHHHTTTCCEEEESHHHHTSSC
T ss_pred ecCCCCC---cccchHHHHHHHHHHHHHHhcCCCeeEEEECCcC-HHHHHHHHHcCCCEEEEehHHhCCCC
Confidence 01111 11112234555555432 2368999999997 78999999999999999999997665
|
| >3jva_A Dipeptide epimerase; enolase superfamily, isomerase; 1.70A {Enterococcus faecalis V583} PDB: 3jw7_A* 3jzu_A* 3k1g_A* 3kum_A* | Back alignment and structure |
|---|
Probab=98.05 E-value=0.00011 Score=69.22 Aligned_cols=136 Identities=7% Similarity=0.041 Sum_probs=100.5
Q ss_pred EecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC--CCcEEEEeccCCCC
Q 020423 130 QIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDD 207 (326)
Q Consensus 130 QL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~--~~pv~vK~r~g~~~ 207 (326)
.+...+++++.+.++.+.+.||..+.++.|+. ++.-.+.+++||+++ ++++.+....+|+
T Consensus 134 ~~~~~~~~~~~~~a~~~~~~G~~~~K~K~g~~-----------------~~~d~~~v~avR~a~g~~~~l~vDan~~~~- 195 (354)
T 3jva_A 134 TLGIDEPNVMAQKAVEKVKLGFDTLKIKVGTG-----------------IEADIARVKAIREAVGFDIKLRLDANQAWT- 195 (354)
T ss_dssp EECSCCHHHHHHHHHHHHHTTCSEEEEECCSC-----------------HHHHHHHHHHHHHHHCTTSEEEEECTTCSC-
T ss_pred EeCCCCHHHHHHHHHHHHHhCCCeEEEEeCCC-----------------HHHHHHHHHHHHHHcCCCCeEEEECCCCCC-
Confidence 34456899999999999999999999987532 344567888999887 4667777665553
Q ss_pred CccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHH
Q 020423 208 HDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR 287 (326)
Q Consensus 208 ~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~ 287 (326)
.++..+ +.+.+++.|+++|. . ..++.+++.+++++++. ++||++.+.+.+++++.++++
T Consensus 196 ---~~~a~~-~~~~L~~~~i~~iE----q------------P~~~~d~~~~~~l~~~~-~iPIa~dE~~~~~~~~~~~l~ 254 (354)
T 3jva_A 196 ---PKDAVK-AIQALADYQIELVE----Q------------PVKRRDLEGLKYVTSQV-NTTIMADESCFDAQDALELVK 254 (354)
T ss_dssp ---HHHHHH-HHHHTTTSCEEEEE----C------------CSCTTCHHHHHHHHHHC-SSEEEESTTCCSHHHHHHHHH
T ss_pred ---HHHHHH-HHHHHHhcCCCEEE----C------------CCChhhHHHHHHHHHhC-CCCEEEcCCcCCHHHHHHHHH
Confidence 445555 35567889999885 1 11233577777777765 899999999999999999998
Q ss_pred hC-CChhhhhHHHHhCCc
Q 020423 288 KG-AHHVMVGRAAYQNPW 304 (326)
Q Consensus 288 ~G-aD~V~iGRall~dP~ 304 (326)
.| +|.|++--.-.....
T Consensus 255 ~~~~d~v~~k~~~~GGit 272 (354)
T 3jva_A 255 KGTVDVINIKLMKCGGIH 272 (354)
T ss_dssp HTCCSEEEECHHHHTSHH
T ss_pred cCCCCEEEECchhcCCHH
Confidence 55 899998766655443
|
| >1n7k_A Deoxyribose-phosphate aldolase; A.pernix, tetramer, alpha-beta TIM barrel, riken S genomics/proteomics initiative, RSGI, structural genomics,; 2.00A {Aeropyrum pernix} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=98.05 E-value=9.4e-05 Score=65.49 Aligned_cols=136 Identities=13% Similarity=0.045 Sum_probs=87.5
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC---CCcEEEEeccCCCCCccH
Q 020423 135 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT---NVPVSVKCRIGVDDHDSY 211 (326)
Q Consensus 135 ~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~---~~pv~vK~r~g~~~~~~~ 211 (326)
..+.-..-++.+.+.|+|.|+++. + +|.-.+ .+.+-+.++++.+ +.|+ |+-+.... .+.
T Consensus 86 ~~~~k~~e~~~Av~~GAdEID~vi-----n------ig~~~~----~v~~ei~~v~~a~~~~g~~l--KvIlEt~~-L~~ 147 (234)
T 1n7k_A 86 PLEVKLVEAQTVLEAGATELDVVP-----H------LSLGPE----AVYREVSGIVKLAKSYGAVV--KVILEAPL-WDD 147 (234)
T ss_dssp CHHHHHHHHHHHHHHTCCEEEECC-----C------GGGCHH----HHHHHHHHHHHHHHHTTCEE--EEECCGGG-SCH
T ss_pred cHHHHHHHHHHHHHcCCCEEEEec-----c------chHHHH----HHHHHHHHHHHHHhhcCCeE--EEEEeccC-CCH
Confidence 455566677888889999999975 2 343222 5556666666655 3454 54432111 122
Q ss_pred HHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHH--HHhcCCCceEEEeCCCCCHHHHHHHHHhC
Q 020423 212 NQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYA--LLRDFPDLTFTLNGGINTVDEVNAALRKG 289 (326)
Q Consensus 212 ~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~--i~~~~~~iPVIa~GgI~s~~da~~~l~~G 289 (326)
++. ....++..++|+|+|-.+.+.....| ...+.+.. .++.. .+||-++|||++.+++.++++.|
T Consensus 148 e~i-~~a~ria~eaGADfVKTsTG~~~~~g-----------At~~dv~l~~m~~~v-~v~VKaaGGirt~~~al~~i~aG 214 (234)
T 1n7k_A 148 KTL-SLLVDSSRRAGADIVKTSTGVYTKGG-----------DPVTVFRLASLAKPL-GMGVKASGGIRSGIDAVLAVGAG 214 (234)
T ss_dssp HHH-HHHHHHHHHTTCSEEESCCSSSCCCC-----------SHHHHHHHHHHHGGG-TCEEEEESSCCSHHHHHHHHHTT
T ss_pred HHH-HHHHHHHHHhCCCEEEeCCCCCCCCC-----------CCHHHHHHHHHHHHH-CCCEEEecCCCCHHHHHHHHHcC
Confidence 333 33566777899999987643210011 12233322 33333 39999999999999999999999
Q ss_pred CC--hhhhhHHHHh
Q 020423 290 AH--HVMVGRAAYQ 301 (326)
Q Consensus 290 aD--~V~iGRall~ 301 (326)
|+ ++..|+.++.
T Consensus 215 a~RiG~S~g~~I~~ 228 (234)
T 1n7k_A 215 ADIIGTSSAVKVLE 228 (234)
T ss_dssp CSEEEETTHHHHHH
T ss_pred ccccchHHHHHHHH
Confidence 99 9999998875
|
| >3i4k_A Muconate lactonizing enzyme; structural genomics, NYSGXRC, target 9450D, isomerase, PSI-2, protein structure initiative; 2.20A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=98.03 E-value=0.00012 Score=69.64 Aligned_cols=132 Identities=14% Similarity=0.133 Sum_probs=97.8
Q ss_pred EEecCCCHHHHHHHHHHHHHC-CCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC--CCcEEEEeccCC
Q 020423 129 LQIGGSNLDNLAKATELANAY-NYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGV 205 (326)
Q Consensus 129 vQL~g~~~~~f~~aA~~a~~a-G~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~--~~pv~vK~r~g~ 205 (326)
..+...+++++.+.++...+. ||..+-++.|++ +++.-.+.+++||+.+ +.++.++...+|
T Consensus 142 ~t~~~~~~~~~~~~a~~~~~~~G~~~~K~Kvg~~----------------~~~~d~~~v~avR~a~g~~~~l~vDan~~~ 205 (383)
T 3i4k_A 142 WALGVLPLDVAVAEIEERIEEFGNRSFKLKMGAG----------------DPAEDTRRVAELAREVGDRVSLRIDINARW 205 (383)
T ss_dssp EEECSCCHHHHHHHHHHHHHHHCCSEEEEECCSS----------------CHHHHHHHHHHHHHTTTTTSEEEEECTTCS
T ss_pred EEeeCCCHHHHHHHHHHHHHhcCCcEEEEeeCCC----------------CHHHHHHHHHHHHHHcCCCCEEEEECCCCC
Confidence 345556788888888877776 999999987542 3556678899999987 467888776666
Q ss_pred CCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHH
Q 020423 206 DDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAA 285 (326)
Q Consensus 206 ~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~ 285 (326)
+ .++..+ +.+.+++.|+++|. . ..++.+++.++++.+.. ++||++.+.+.+++++.++
T Consensus 206 ~----~~~A~~-~~~~l~~~~i~~iE----q------------P~~~~d~~~~~~l~~~~-~iPIa~dE~~~~~~~~~~~ 263 (383)
T 3i4k_A 206 D----RRTALH-YLPILAEAGVELFE----Q------------PTPADDLETLREITRRT-NVSVMADESVWTPAEALAV 263 (383)
T ss_dssp C----HHHHHH-HHHHHHHTTCCEEE----S------------CSCTTCHHHHHHHHHHH-CCEEEESTTCSSHHHHHHH
T ss_pred C----HHHHHH-HHHHHHhcCCCEEE----C------------CCChhhHHHHHHHHhhC-CCCEEecCccCCHHHHHHH
Confidence 4 344444 45567889999985 1 11233577777777664 8999999999999999999
Q ss_pred HHhC-CChhhhhHH
Q 020423 286 LRKG-AHHVMVGRA 298 (326)
Q Consensus 286 l~~G-aD~V~iGRa 298 (326)
++.| +|.|++--.
T Consensus 264 i~~~~~d~v~~k~~ 277 (383)
T 3i4k_A 264 VKAQAADVIALKTT 277 (383)
T ss_dssp HHHTCCSEEEECTT
T ss_pred HHcCCCCEEEEccc
Confidence 9965 899887543
|
| >4gj1_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; HISA, csgid, niaid,; 2.15A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=98.02 E-value=3.5e-06 Score=75.32 Aligned_cols=84 Identities=17% Similarity=0.298 Sum_probs=65.8
Q ss_pred HHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHH
Q 020423 219 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRA 298 (326)
Q Consensus 219 a~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRa 298 (326)
++.+++.|+|.+|+-.-++...+ .+.+++.+.++.++. .+|+...|||++.++++++++.|||-|.++++
T Consensus 37 a~~~~~~gad~lhvvDld~a~~~---------~~~~~~~i~~i~~~~-~~pl~vGGGIrs~e~~~~~l~~GadkVii~t~ 106 (243)
T 4gj1_A 37 FKEYEKAGAKELHLVDLTGAKDP---------SKRQFALIEKLAKEV-SVNLQVGGGIRSKEEVKALLDCGVKRVVIGSM 106 (243)
T ss_dssp HHHHHHHTCCEEEEEEHHHHHCG---------GGCCHHHHHHHHHHC-CSEEEEESSCCCHHHHHHHHHTTCSEEEECTT
T ss_pred HHHHHHCCCCEEEEEecCccccc---------chhHHHHHHHHHHhc-CCCeEeccccccHHHHHHHHHcCCCEEEEccc
Confidence 45667789999998643322111 123478888888775 89999999999999999999999999999999
Q ss_pred HHhCCchhHHhHHH
Q 020423 299 AYQNPWYTLGHVDT 312 (326)
Q Consensus 299 ll~dP~l~~~~i~~ 312 (326)
++.||.++.+..+.
T Consensus 107 a~~~p~li~e~~~~ 120 (243)
T 4gj1_A 107 AIKDATLCLEILKE 120 (243)
T ss_dssp TTTCHHHHHHHHHH
T ss_pred cccCCchHHHHHhc
Confidence 99999965554444
|
| >3v3w_A Starvation sensing protein RSPA; enolase, enzyme function initiative, EFI, lyase; HET: NHE; 1.40A {Cellvibrio japonicus} PDB: 3v4b_A* 4f4r_A 3qkf_A* 3qke_A* 3p93_A* 3ow1_A 3pk7_A* 3rgt_A* 3bsm_A | Back alignment and structure |
|---|
Probab=98.02 E-value=7.3e-05 Score=72.11 Aligned_cols=146 Identities=12% Similarity=0.183 Sum_probs=101.9
Q ss_pred cEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCcccc------------------c--cCCHHHHHHH
Q 020423 126 PIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVS------------------L--MLDPKFVGEA 185 (326)
Q Consensus 126 piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgs------------------l--~~r~~~l~ei 185 (326)
|+-.-+.+.+++++++.++.+.+.||..+-+..|.|... ..||.+ + ..+.+...++
T Consensus 140 ~~y~~~~~~~~e~~~~~a~~~~~~Gf~~iKlKvG~~~~~----~~~g~~~~~~~~~~~~~~~p~~~~~d~~~~~~~d~e~ 215 (424)
T 3v3w_A 140 LSYTHANGKDLDSTLEAVRKAKDKGYKAIRVQCGIPGIA----KTYGVSTNTKSYEPADADLPSVEVWSTEKYLNYIPDV 215 (424)
T ss_dssp EEEEEEEESSHHHHHHHHHHHHHTTCSEEEEEECCTTCS----CCTTCC-----CCSCCBSSCCEEEECHHHHHHHHHHH
T ss_pred eEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEeccCcccc----ccccccccccccccccccccccccccchhHHHHHHHH
Confidence 333334557899999999999999999999998864311 012210 0 0125677889
Q ss_pred HHHHHhcC--CCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHh
Q 020423 186 MSVIAANT--NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLR 263 (326)
Q Consensus 186 v~avr~~~--~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~ 263 (326)
+++||+++ ++++.+....+|+ .++..+ +++.+++.|+++|. .+ .++.+++.++++++
T Consensus 216 v~avR~avG~d~~l~vDaN~~~~----~~~A~~-~~~~L~~~~i~~iE----qP------------~~~~d~~~~~~l~~ 274 (424)
T 3v3w_A 216 FAAVRKEFGPDIHLLHDVHHRLT----PIEAAR-LGKALEPYHLFWME----DA------------VPAENQESFKLIRQ 274 (424)
T ss_dssp HHHHHHHHCSSSEEEEECTTCCC----HHHHHH-HHHHHGGGCCSEEE----CC------------SCCSSTTHHHHHHH
T ss_pred HHHHHHHcCCCCcEEEeCCCCCC----HHHHHH-HHHHHHhcCCCEEE----CC------------CChHhHHHHHHHHh
Confidence 99999987 4677776655553 445555 45567889999985 11 12234556677776
Q ss_pred cCCCceEEEeCCCCCHHHHHHHHHhC-CChhhhhH
Q 020423 264 DFPDLTFTLNGGINTVDEVNAALRKG-AHHVMVGR 297 (326)
Q Consensus 264 ~~~~iPVIa~GgI~s~~da~~~l~~G-aD~V~iGR 297 (326)
.. ++||++.+.+.+++++.++++.| +|.|++--
T Consensus 275 ~~-~iPIa~dE~~~~~~~~~~~i~~ga~d~v~~k~ 308 (424)
T 3v3w_A 275 HT-TTPLAVGEVFNSIHDCRELIQNQWIDYIRTTI 308 (424)
T ss_dssp HC-CSCEEECTTCCSGGGTHHHHHTTCCSEECCCT
T ss_pred hC-CCCEEEccCcCCHHHHHHHHHcCCCCeEeecc
Confidence 64 89999999999999999999966 89888753
|
| >4e4u_A Mandalate racemase/muconate lactonizing enzyme; mandelate racemase, aldolase, structural genomics, biology; 1.35A {Unidentified} | Back alignment and structure |
|---|
Probab=98.00 E-value=9.1e-05 Score=71.15 Aligned_cols=136 Identities=11% Similarity=0.066 Sum_probs=98.5
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccc-cCCHHHHHHHHHHHHhcCC--CcEEEEeccCCCCCcc
Q 020423 134 SNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSL-MLDPKFVGEAMSVIAANTN--VPVSVKCRIGVDDHDS 210 (326)
Q Consensus 134 ~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl-~~r~~~l~eiv~avr~~~~--~pv~vK~r~g~~~~~~ 210 (326)
.+++++++.++.+.+.||..+-++.+++... ..|... ..+++...+.+++||++++ +++.+....+| +
T Consensus 143 ~~~e~~~~~a~~~~~~G~~~iKlK~g~~~~~-----~~g~~~~~~~~~~d~~~v~avR~a~G~d~~l~vDaN~~~----~ 213 (412)
T 4e4u_A 143 DDPDLAAECAAENVKLGFTAVKFDPAGPYTA-----YSGHQLSLEVLDRCELFCRRVREAVGSKADLLFGTHGQM----V 213 (412)
T ss_dssp SCHHHHHHHHHHHHHHTCSEEEECCSCCCBT-----TCCBCCCHHHHHHHHHHHHHHHHHHTTSSEEEECCCSCB----C
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECCCCCCcc-----ccccccchhhHHHHHHHHHHHHHHhCCCCeEEEECCCCC----C
Confidence 5789999999999999999999998876421 112111 1135677889999999874 56666555444 3
Q ss_pred HHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhC-
Q 020423 211 YNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKG- 289 (326)
Q Consensus 211 ~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~G- 289 (326)
.++..+ +++.+++.|+++|. . ..++.+++.++++++.. ++||++.+.+.+++++.++++.|
T Consensus 214 ~~~A~~-~~~~L~~~~i~~iE----e------------P~~~~d~~~~~~l~~~~-~iPIa~dE~~~~~~~~~~~i~~~a 275 (412)
T 4e4u_A 214 PSSAIR-LAKRLEKYDPLWFE----E------------PVPPGQEEAIAQVAKHT-SIPIATGERLTTKYEFHKLLQAGG 275 (412)
T ss_dssp HHHHHH-HHHHHGGGCCSEEE----C------------CSCSSCHHHHHHHHHTC-SSCEEECTTCCHHHHHHHHHHTTC
T ss_pred HHHHHH-HHHHhhhcCCcEEE----C------------CCChhhHHHHHHHHhhC-CCCEEecCccCCHHHHHHHHHcCC
Confidence 445555 45667889999985 1 11233577777877764 89999999999999999999966
Q ss_pred CChhhhh
Q 020423 290 AHHVMVG 296 (326)
Q Consensus 290 aD~V~iG 296 (326)
+|.|++-
T Consensus 276 ~d~v~~d 282 (412)
T 4e4u_A 276 ASILQLN 282 (412)
T ss_dssp CSEECCC
T ss_pred CCEEEeC
Confidence 8988874
|
| >1to3_A Putative aldolase YIHT; beta-alpha barrel, structural genomics, PSI, protein structure initiative; 2.70A {Salmonella typhimurium} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=98.00 E-value=0.00011 Score=67.79 Aligned_cols=138 Identities=12% Similarity=0.049 Sum_probs=81.4
Q ss_pred HHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEecc-C--CCCCccHHHHHHH
Q 020423 141 KATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRI-G--VDDHDSYNQLCDF 217 (326)
Q Consensus 141 ~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~-g--~~~~~~~~e~~~~ 217 (326)
..++.+.+.|+|+|.+.+-.. .+. .. ....+.+.++.++.+ ..+.|+.+-+-. + ..+..+..+....
T Consensus 112 ~~ve~a~~~GAdaV~vlv~~~------~d~-~~--~~~~~~i~~v~~~~~-~~G~p~lv~~~~~g~~v~~~~~~~~~v~~ 181 (304)
T 1to3_A 112 INAQAVKRDGAKALKLLVLWR------SDE-DA--QQRLNMVKEFNELCH-SNGLLSIIEPVVRPPRCGDKFDREQAIID 181 (304)
T ss_dssp CCHHHHHHTTCCEEEEEEEEC------TTS-CH--HHHHHHHHHHHHHHH-TTTCEEEEEEEECCCSSCSCCCHHHHHHH
T ss_pred hhHHHHHHcCCCEEEEEEEcC------CCc-cH--HHHHHHHHHHHHHHH-HcCCcEEEEEECCCCccccCCChhHHHHH
Confidence 345678889999999764111 110 00 112233344444432 348998876532 1 1111222133333
Q ss_pred HHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhc---CCCce-EEEeCCCCCH----HHHHHHHHhC
Q 020423 218 IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRD---FPDLT-FTLNGGINTV----DEVNAALRKG 289 (326)
Q Consensus 218 ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~---~~~iP-VIa~GgI~s~----~da~~~l~~G 289 (326)
.++...+.|+|++-++.... +. ..++.+.++.+. ...+| |+..||+ +. +.+..+++.|
T Consensus 182 aa~~a~~lGaD~iKv~~~~~---~~----------g~~~~~~~vv~~~~~~~~~P~Vv~aGG~-~~~~~~~~~~~a~~aG 247 (304)
T 1to3_A 182 AAKELGDSGADLYKVEMPLY---GK----------GARSDLLTASQRLNGHINMPWVILSSGV-DEKLFPRAVRVAMEAG 247 (304)
T ss_dssp HHHHHTTSSCSEEEECCGGG---GC----------SCHHHHHHHHHHHHHTCCSCEEECCTTS-CTTTHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCEEEeCCCcC---CC----------CCHHHHHHHHHhccccCCCCeEEEecCC-CHHHHHHHHHHHHHcC
Confidence 45566779999998875311 10 024555555544 23899 9999999 55 4477788899
Q ss_pred CChhhhhHHHHhC
Q 020423 290 AHHVMVGRAAYQN 302 (326)
Q Consensus 290 aD~V~iGRall~d 302 (326)
+++|.+||++...
T Consensus 248 a~Gv~vGRaI~q~ 260 (304)
T 1to3_A 248 ASGFLAGRAVWSS 260 (304)
T ss_dssp CCEEEESHHHHGG
T ss_pred CeEEEEehHHhCc
Confidence 9999999999976
|
| >3tji_A Mandelate racemase/muconate lactonizing enzyme, N domain protein; enolase, dehydratase, enzyme function initiative, EFI, lyase; 1.80A {Enterobacter SP} | Back alignment and structure |
|---|
Probab=98.00 E-value=5.2e-05 Score=73.11 Aligned_cols=151 Identities=11% Similarity=0.059 Sum_probs=103.2
Q ss_pred cEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCc------ccCCCCccccc--cCCHHHHHHHHHHHHhcC--CC
Q 020423 126 PIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPK------VAGHGCFGVSL--MLDPKFVGEAMSVIAANT--NV 195 (326)
Q Consensus 126 piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~------~~r~d~yGgsl--~~r~~~l~eiv~avr~~~--~~ 195 (326)
|+-..+.+.+++++++.++.+.+.||..+-+..|..... ...... |..+ ....+...+++++||+++ ++
T Consensus 145 ~~y~~~~~~~~e~~~~~a~~~~~~G~~~iKlKvG~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~d~e~v~avR~avG~d~ 223 (422)
T 3tji_A 145 PAYSHASGETLEALFASVDALIAQGYRHIRCQLGFYGGTPSALHAPDNPTP-GAWFDQQEYMSNTVEMFHALREKYGWKL 223 (422)
T ss_dssp EEEEEEEESSHHHHHHHHHHHHHTTCSEEEEEESCCCBCGGGSCCCSSCCS-SEECCHHHHHHHHHHHHHHHHHHHCSSS
T ss_pred EEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEeeccCCcccccccccccccc-cccccchhHHHHHHHHHHHHHHHcCCCC
Confidence 333334567899999999999999999999998764210 000000 1111 112567888999999987 46
Q ss_pred cEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCC
Q 020423 196 PVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGG 275 (326)
Q Consensus 196 pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~Gg 275 (326)
++.+....+|+ .++..+ +++.+++.|+++|. . ..++.+++.++++++.. ++||++.+.
T Consensus 224 ~L~vDaN~~~~----~~~A~~-~~~~Le~~~i~~iE----q------------P~~~~d~~~~~~l~~~~-~iPIa~dE~ 281 (422)
T 3tji_A 224 HILHDVHERLF----PQQAVQ-LAKQLEPFQPYFIE----D------------ILPPQQSAWLEQVRQQS-CVPLALGEL 281 (422)
T ss_dssp EEEEECTTCSC----HHHHHH-HHHHHGGGCCSEEE----C------------CSCGGGGGGHHHHHHHC-CCCEEECTT
T ss_pred EEEEECCCCCC----HHHHHH-HHHHHHhhCCCeEE----C------------CCChhhHHHHHHHHhhC-CCCEEEeCC
Confidence 77777665553 445555 45567889999985 1 11233456667777664 899999999
Q ss_pred CCCHHHHHHHHHhC-CChhhhhHHH
Q 020423 276 INTVDEVNAALRKG-AHHVMVGRAA 299 (326)
Q Consensus 276 I~s~~da~~~l~~G-aD~V~iGRal 299 (326)
+.+++++.++++.| +|.|++--.-
T Consensus 282 ~~~~~~~~~ll~~ga~d~v~~k~~~ 306 (422)
T 3tji_A 282 FNNPAEWHDLIVNRRIDFIRCHVSQ 306 (422)
T ss_dssp CCSGGGTHHHHHTTCCSEECCCGGG
T ss_pred cCCHHHHHHHHhcCCCCEEecCccc
Confidence 99999999999965 8998875433
|
| >2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.99 E-value=5.2e-06 Score=74.77 Aligned_cols=81 Identities=10% Similarity=-0.013 Sum_probs=60.1
Q ss_pred HHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHH
Q 020423 219 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRA 298 (326)
Q Consensus 219 a~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRa 298 (326)
++.+++.|+|.|+++.......+ ....++.+.++.+.. ++||++.|||.+.+++.++++.|||+|.+|++
T Consensus 36 a~~~~~~Ga~~i~v~d~~~~~~~---------~g~~~~~i~~i~~~~-~iPvi~~ggi~~~~~i~~~~~~Gad~v~lg~~ 105 (266)
T 2w6r_A 36 VVEVEKRGAGEILLTSIDRDGTK---------SGYDTEMIRFVRPLT-TLPIIASGGAGKMEHFLEAFLAGADKALAASV 105 (266)
T ss_dssp HHHHHHHTCSEEEEEETTTSSCS---------SCCCHHHHHHHGGGC-CSCEEEESCCCSTHHHHHHHHHTCSEEECCCC
T ss_pred HHHHHHCCCCEEEEEecCcccCC---------CcccHHHHHHHHHhc-CCCEEEECCCCCHHHHHHHHHcCCcHhhhhHH
Confidence 44566799999999765431111 112477888877664 99999999999999999999999999999999
Q ss_pred HH-h--CCchhHHh
Q 020423 299 AY-Q--NPWYTLGH 309 (326)
Q Consensus 299 ll-~--dP~l~~~~ 309 (326)
++ . +|+.+.+.
T Consensus 106 ~~~~~~~~~~~~~~ 119 (266)
T 2w6r_A 106 FHFREIDMRELKEY 119 (266)
T ss_dssp C------CHHHHHH
T ss_pred HHhCCCCHHHHHHH
Confidence 99 5 88854443
|
| >3vcn_A Mannonate dehydratase; enolase, magnesium binding site, enzyme function initiative, lyase; 1.45A {Caulobacter crescentus} PDB: 4gme_A* 4fi4_A 3thu_A | Back alignment and structure |
|---|
Probab=97.97 E-value=6.8e-05 Score=72.34 Aligned_cols=145 Identities=10% Similarity=0.066 Sum_probs=99.7
Q ss_pred EEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCcccc------------------c--cCCHHHHHHHH
Q 020423 127 IVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVS------------------L--MLDPKFVGEAM 186 (326)
Q Consensus 127 iivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgs------------------l--~~r~~~l~eiv 186 (326)
+-..+.+.+++++++.++.+.+.||..+-+..|.|... ..||.+ + ....+...+++
T Consensus 142 ~y~~~~~~~~e~~~~~a~~~~~~Gf~~iKlKvg~~~~~----~~~g~~~~~~~~~~~~~~~p~~~~~d~~~~~~~d~e~v 217 (425)
T 3vcn_A 142 VYGHANGETIEDTIAEAVKYKAMGYKAIRLQTGVPGLA----STYGVSKDKMFYEPADNDLPTENIWSTAKYLNSVPKLF 217 (425)
T ss_dssp EEEEEEESSHHHHHHHHHHHHHTTCSEEEEEECCTTCS----CCTTCSSCSSCCCCCCBSSCCEEEECHHHHHTTTHHHH
T ss_pred EEEeCCCCCHHHHHHHHHHHHHcCCCEEEEeecCcccc----ccccccccccccCcccccccccccccchhHHHHHHHHH
Confidence 33334557899999999999999999999998864210 011110 0 00134567888
Q ss_pred HHHHhcC--CCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhc
Q 020423 187 SVIAANT--NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRD 264 (326)
Q Consensus 187 ~avr~~~--~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~ 264 (326)
++||+++ ++++.+....+|+ .++..+ +++.+++.|+++|. .+ .++.+++.++++++.
T Consensus 218 ~avR~a~G~d~~l~vDaN~~~~----~~~A~~-~~~~L~~~~i~~iE----qP------------~~~~d~~~~~~l~~~ 276 (425)
T 3vcn_A 218 ERAREVLGWDVHLLHDVHHRLT----PIEAAR-LGKDLEPYRLFWLE----DS------------VPAENQAGFRLIRQH 276 (425)
T ss_dssp HHHHHHHCSSSEEEEECTTCCC----HHHHHH-HHHHHGGGCCSEEE----CC------------SCCSSTTHHHHHHHH
T ss_pred HHHHHHcCCCCEEEEECCCCCC----HHHHHH-HHHHHHhcCCCEEE----CC------------CChhhHHHHHHHHhc
Confidence 9999987 4677776655553 445555 45667889999985 11 122245566777766
Q ss_pred CCCceEEEeCCCCCHHHHHHHHHhC-CChhhhhH
Q 020423 265 FPDLTFTLNGGINTVDEVNAALRKG-AHHVMVGR 297 (326)
Q Consensus 265 ~~~iPVIa~GgI~s~~da~~~l~~G-aD~V~iGR 297 (326)
. ++||++.+.+.+++++.++++.| +|.|++--
T Consensus 277 ~-~iPIa~dE~~~~~~~~~~~i~~~a~d~v~~k~ 309 (425)
T 3vcn_A 277 T-TTPLAVGEIFAHVWDAKQLIEEQLIDYLRATV 309 (425)
T ss_dssp C-CSCEEECTTCCSGGGTHHHHHTTCCSEECCCT
T ss_pred C-CCCEEeCCCcCCHHHHHHHHHcCCCCeEecCh
Confidence 4 89999999999999999999966 89888743
|
| >1tqx_A D-ribulose-5-phosphate 3-epimerase, putative; structural genomics, protein structure initiative, PSI; 2.00A {Plasmodium falciparum} SCOP: c.1.2.2 | Back alignment and structure |
|---|
Probab=97.97 E-value=0.00081 Score=59.27 Aligned_cols=52 Identities=15% Similarity=0.332 Sum_probs=43.2
Q ss_pred CccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhCCc
Q 020423 252 PLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW 304 (326)
Q Consensus 252 ~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~dP~ 304 (326)
+..++.++++++...+++|.+-|||+ ++.+.++.+.|||.+.+||+++..++
T Consensus 158 ~~~l~ki~~lr~~~~~~~I~VdGGI~-~~ti~~~~~aGAd~~V~GsaIf~~~d 209 (227)
T 1tqx_A 158 HDMMGKVSFLRKKYKNLNIQVDGGLN-IETTEISASHGANIIVAGTSIFNAED 209 (227)
T ss_dssp GGGHHHHHHHHHHCTTCEEEEESSCC-HHHHHHHHHHTCCEEEESHHHHTCSS
T ss_pred hHHHHHHHHHHHhccCCeEEEECCCC-HHHHHHHHHcCCCEEEEeHHHhCCCC
Confidence 34467777776654478999999995 89999999999999999999998655
|
| >3go2_A Putative L-alanine-DL-glutamate epimerase; structural genomics, isomerase, PSI-2; 1.70A {Burkholderia xenovorans} PDB: 2oo6_A 3sn0_A 3sn1_A* 3sn4_A* | Back alignment and structure |
|---|
Probab=97.95 E-value=0.00011 Score=70.57 Aligned_cols=137 Identities=9% Similarity=0.053 Sum_probs=96.2
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCc--cc------ccc---CCHHHHHHHHHHHHhcC--CCcEEEE
Q 020423 134 SNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCF--GV------SLM---LDPKFVGEAMSVIAANT--NVPVSVK 200 (326)
Q Consensus 134 ~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~y--Gg------sl~---~r~~~l~eiv~avr~~~--~~pv~vK 200 (326)
.+++++++.++.+.+.||..+-+..+.+..... ..| |. ... ...++..+++++||+++ ++++.+.
T Consensus 142 ~~~e~~~~~a~~~~~~Gf~~iKlKv~~~~~~~~--~~~~pG~~~~~~~~~~~~~~~~~~~~e~v~avR~avG~d~~l~vD 219 (409)
T 3go2_A 142 TDLDGVKRTAEEARERQFRAIKTNIFIHDDGPL--HAWRPGFAVPFQPALNVDRKVLRNLRAHLEALRDGAGPDVEILLD 219 (409)
T ss_dssp CSHHHHHHHHHHHHHTTCCEEEECCEECSSSSC--EECBGGGTBSCCTTCCCCHHHHHHHHHHHHHHHHHHCTTSEEEEE
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEcccccccccc--cccccCCCccCCcccccchHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 368999999999999999999998732211100 001 11 000 12567889999999987 5677776
Q ss_pred eccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHH
Q 020423 201 CRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVD 280 (326)
Q Consensus 201 ~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~ 280 (326)
...+|+ .++..+ +++.+++.|+++|... ..+++.++++++.. ++||++.+.+.+++
T Consensus 220 aN~~~~----~~~A~~-~~~~L~~~~i~~iE~P------------------~~d~~~~~~l~~~~-~iPIa~dE~~~~~~ 275 (409)
T 3go2_A 220 LNFNAK----PEGYLK-ILRELADFDLFWVEID------------------SYSPQGLAYVRNHS-PHPISSCETLFGIR 275 (409)
T ss_dssp CTTCSC----HHHHHH-HHHHTTTSCCSEEECC------------------CSCHHHHHHHHHTC-SSCEEECTTCCHHH
T ss_pred CCCCCC----HHHHHH-HHHHHhhcCCeEEEeC------------------cCCHHHHHHHHhhC-CCCEEeCCCcCCHH
Confidence 655553 445555 4566788999999721 12466777777664 89999999999999
Q ss_pred HHHHHHHhC-CChhhhh
Q 020423 281 EVNAALRKG-AHHVMVG 296 (326)
Q Consensus 281 da~~~l~~G-aD~V~iG 296 (326)
++.++++.| +|.|++=
T Consensus 276 ~~~~~i~~~~~d~v~~k 292 (409)
T 3go2_A 276 EFKPFFDANAVDVAIVD 292 (409)
T ss_dssp HHHHHHHTTCCSEEEEC
T ss_pred HHHHHHHhCCCCEEEeC
Confidence 999999966 8998764
|
| >3glc_A Aldolase LSRF; TIM barrel, lyase, schiff base; HET: R5P; 2.50A {Escherichia coli} PDB: 3gnd_A* 3gkf_O | Back alignment and structure |
|---|
Probab=97.95 E-value=0.00011 Score=67.35 Aligned_cols=160 Identities=16% Similarity=0.188 Sum_probs=90.7
Q ss_pred CCcEEEEecCCC-----H--HHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCc
Q 020423 124 QHPIVLQIGGSN-----L--DNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVP 196 (326)
Q Consensus 124 ~~piivQL~g~~-----~--~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~p 196 (326)
+.++++.|.+++ + +.....++.+.+.|+|+|.++.. .+.+.+. ...+.+.+++++.+ ..+.|
T Consensus 105 ~~~lil~l~~~t~~~~~~~~~~l~~~ve~Av~~GAdaV~~~i~------~Gs~~~~----~~l~~i~~v~~~a~-~~Glp 173 (295)
T 3glc_A 105 NRPVVLRASGANSILAELSNEAVALSMDDAVRLNSCAVAAQVY------IGSEYEH----QSIKNIIQLVDAGM-KVGMP 173 (295)
T ss_dssp CCCEEEECEECCCTTSCTTCCEECSCHHHHHHTTCSEEEEEEC------TTSTTHH----HHHHHHHHHHHHHH-TTTCC
T ss_pred CccEEEEEcCCCcCCCCCccchhHHHHHHHHHCCCCEEEEEEE------CCCCcHH----HHHHHHHHHHHHHH-HcCCE
Confidence 557888886543 1 11223456677899999999742 1111111 11222333343332 23788
Q ss_pred EEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCC
Q 020423 197 VSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 276 (326)
Q Consensus 197 v~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI 276 (326)
+.+-...|.....+ .+.+...+++..+.|+|+|-+.- .+ +.+.++.+.. .+||++.||+
T Consensus 174 vIie~~~G~~~~~d-~e~i~~aariA~elGAD~VKt~~-----t~--------------e~~~~vv~~~-~vPVv~~GG~ 232 (295)
T 3glc_A 174 TMAVTGVGKDMVRD-QRYFSLATRIAAEMGAQIIKTYY-----VE--------------KGFERIVAGC-PVPIVIAGGK 232 (295)
T ss_dssp EEEEECC----CCS-HHHHHHHHHHHHHTTCSEEEEEC-----CT--------------TTHHHHHHTC-SSCEEEECCS
T ss_pred EEEECCCCCccCCC-HHHHHHHHHHHHHhCCCEEEeCC-----CH--------------HHHHHHHHhC-CCcEEEEECC
Confidence 87743222111112 23333345667789999998651 01 1134455444 7999999999
Q ss_pred CC-HH----HHHHHHHhCCChhhhhHHHHhC--CchhHHhHHHhhh
Q 020423 277 NT-VD----EVNAALRKGAHHVMVGRAAYQN--PWYTLGHVDTAIY 315 (326)
Q Consensus 277 ~s-~~----da~~~l~~GaD~V~iGRall~d--P~l~~~~i~~~~~ 315 (326)
.. .+ .+.++++.||++|.+||.++.. |..+.+.+.+.++
T Consensus 233 ~~~~~~~l~~v~~ai~aGA~Gv~vGRnI~q~~dp~~~~~al~~ivh 278 (295)
T 3glc_A 233 KLPEREALEMCWQAIDQGASGVDMGRNIFQSDHPVAMMKAVQAVVH 278 (295)
T ss_dssp CCCHHHHHHHHHHHHHTTCSEEEESHHHHTSSSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCeEEEeHHHHhcCcCHHHHHHHHHHHHh
Confidence 84 43 4555667899999999999975 4444555555444
|
| >3tj4_A Mandelate racemase; enolase, dehydratase, enzyme function initiative, EFI, lyase; 1.50A {Agrobacterium tumefaciens} PDB: 4h19_A* | Back alignment and structure |
|---|
Probab=97.91 E-value=0.00031 Score=66.43 Aligned_cols=123 Identities=14% Similarity=0.145 Sum_probs=93.0
Q ss_pred CHHHHHHHHHHHHHC-CCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC--CCcEEEEeccCCCCCccH
Q 020423 135 NLDNLAKATELANAY-NYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSY 211 (326)
Q Consensus 135 ~~~~f~~aA~~a~~a-G~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~--~~pv~vK~r~g~~~~~~~ 211 (326)
+++++.+.++.+.+. ||..+.++.|.+ +++.-.+.+++||+++ +.++.+....+|+ .
T Consensus 151 ~~~~~~~~a~~~~~~~G~~~~K~Kvg~~----------------~~~~d~~~v~avR~~~g~~~~l~vDan~~~~----~ 210 (372)
T 3tj4_A 151 TLEDLLAGSARAVEEDGFTRLKIKVGHD----------------DPNIDIARLTAVRERVDSAVRIAIDGNGKWD----L 210 (372)
T ss_dssp CHHHHHHHHHHHHHTTCCCEEEEECCCS----------------SHHHHHHHHHHHHHHSCTTCEEEEECTTCCC----H
T ss_pred CHHHHHHHHHHHHHccCCCEEEEcCCCC----------------CHHHHHHHHHHHHHHcCCCCcEEeeCCCCCC----H
Confidence 789999999888888 999999987643 2445578899999987 4677777665554 4
Q ss_pred HHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhC-C
Q 020423 212 NQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKG-A 290 (326)
Q Consensus 212 ~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~G-a 290 (326)
++..+ +.+.+++.|+++|. . ..++.+++.++++.++. ++||++...+.+++++.++++.| +
T Consensus 211 ~~a~~-~~~~l~~~~i~~iE----q------------P~~~~d~~~~~~l~~~~-~iPIa~dE~~~~~~~~~~~i~~~~~ 272 (372)
T 3tj4_A 211 PTCQR-FCAAAKDLDIYWFE----E------------PLWYDDVTSHARLARNT-SIPIALGEQLYTVDAFRSFIDAGAV 272 (372)
T ss_dssp HHHHH-HHHHTTTSCEEEEE----S------------CSCTTCHHHHHHHHHHC-SSCEEECTTCCSHHHHHHHHHTTCC
T ss_pred HHHHH-HHHHHhhcCCCEEE----C------------CCCchhHHHHHHHHhhc-CCCEEeCCCccCHHHHHHHHHcCCC
Confidence 45445 34567888998884 1 11233577777777765 89999999999999999999965 8
Q ss_pred Chhhh
Q 020423 291 HHVMV 295 (326)
Q Consensus 291 D~V~i 295 (326)
|.|++
T Consensus 273 d~v~~ 277 (372)
T 3tj4_A 273 AYVQP 277 (372)
T ss_dssp SEECC
T ss_pred CEEEe
Confidence 98887
|
| >3ddm_A Putative mandelate racemase/muconate lactonizing enzyme; structural genomics, NYSGXRC, target 9284B, enolase family, PSI-2; 2.60A {Bordetella bronchiseptica} | Back alignment and structure |
|---|
Probab=97.91 E-value=7e-05 Score=71.49 Aligned_cols=123 Identities=12% Similarity=0.073 Sum_probs=93.9
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC--CCcEEEEeccCCCCCccH
Q 020423 134 SNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSY 211 (326)
Q Consensus 134 ~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~--~~pv~vK~r~g~~~~~~~ 211 (326)
..++++++.++++.+.||+.+.++.|. +++.-.+.+++||+++ +.++.+....+|+ .
T Consensus 154 ~~~e~~~~~a~~~~~~G~~~iKlK~g~-----------------~~~~d~~~v~avR~a~g~~~~l~vDaN~~~~----~ 212 (392)
T 3ddm_A 154 INPENPEDVVARKAAEGYRAFKLKVGF-----------------DDARDVRNALHVRELLGAATPLMADANQGWD----L 212 (392)
T ss_dssp ECSSSHHHHHHHHHHHTCCCEEEECSS-----------------CHHHHHHHHHHHHHHHCSSSCEEEECTTCCC----H
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCC-----------------CHHHHHHHHHHHHHhcCCCceEEEeCCCCCC----H
Confidence 347889999999999999999998753 2556678899999987 5678887766664 3
Q ss_pred HHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCcc-HHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhC-
Q 020423 212 NQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLK-YEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKG- 289 (326)
Q Consensus 212 ~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~-~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~G- 289 (326)
++..+ +++.+++.|+++|. . ..++.+ ++.++++++.. ++||.+.+.+.+++++.++++.|
T Consensus 213 ~~A~~-~~~~L~~~~i~~iE----e------------P~~~~d~~~~~~~l~~~~-~iPIa~dE~~~~~~~~~~~i~~~a 274 (392)
T 3ddm_A 213 PRARQ-MAQRLGPAQLDWLE----E------------PLRADRPAAEWAELAQAA-PMPLAGGENIAGVAAFETALAARS 274 (392)
T ss_dssp HHHHH-HHHHHGGGCCSEEE----C------------CSCTTSCHHHHHHHHHHC-SSCEEECTTCCSHHHHHHHHHHTC
T ss_pred HHHHH-HHHHHHHhCCCEEE----C------------CCCccchHHHHHHHHHhc-CCCEEeCCCCCCHHHHHHHHHcCC
Confidence 44444 45667889999985 1 112334 67777777765 89999999999999999999855
Q ss_pred CChhhh
Q 020423 290 AHHVMV 295 (326)
Q Consensus 290 aD~V~i 295 (326)
+|.|++
T Consensus 275 ~d~v~~ 280 (392)
T 3ddm_A 275 LRVMQP 280 (392)
T ss_dssp EEEECC
T ss_pred CCEEEe
Confidence 888887
|
| >4a29_A Engineered retro-aldol enzyme RA95.0; de novo protein, engineered enzyme, retro-aldolase, directed evolution; HET: 3NK MLT; 1.10A {Synthetic construct} PDB: 4a2s_A* 4a2r_A* 3tc7_A 3tc6_A 3nl8_A* 3nxf_A* 3o6y_X 3ud6_A* 1igs_A 1juk_A 1jul_A* 3hoj_A 1a53_A* 1lbf_A* 1lbl_A* 3nyz_A 3nz1_A* 3uy7_A 3uxd_A* 3uxa_A* ... | Back alignment and structure |
|---|
Probab=97.91 E-value=0.00054 Score=61.03 Aligned_cols=52 Identities=17% Similarity=0.264 Sum_probs=44.7
Q ss_pred cHHHHHHHHhcCC-CceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhCCch
Q 020423 254 KYEYYYALLRDFP-DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 305 (326)
Q Consensus 254 ~~~~i~~i~~~~~-~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~dP~l 305 (326)
+.+...++.+..+ ++.+|+-+||.+++|+..+.+.|+|+|.||.+++.+|+-
T Consensus 190 dl~~t~~L~~~ip~~~~~VsESGI~t~~dv~~l~~~G~~a~LVGealmr~~d~ 242 (258)
T 4a29_A 190 NKENQRKLISMIPSNVVKVAKLGISERNEIEELRKLGVNAFLISSSLMRNPEK 242 (258)
T ss_dssp CHHHHHHHHTTSCTTSEEEEEESSCCHHHHHHHHHTTCCEEEECHHHHHCTTH
T ss_pred CHHHHHHHHhhCCCCCEEEEcCCCCCHHHHHHHHHCCCCEEEECHHHhCCCcH
Confidence 4555566666654 688999999999999999999999999999999999983
|
| >3p3b_A Mandelate racemase/muconate lactonizing protein; enolase superfamily fold, galacturonate dehydratase, D-tartr galacturonate, lyase; HET: TAR; 1.65A {Geobacillus SP} PDB: 3ops_A* 3n4f_A* 3qpe_A* | Back alignment and structure |
|---|
Probab=97.89 E-value=7.9e-05 Score=71.05 Aligned_cols=128 Identities=8% Similarity=-0.065 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC--CCcEEEEeccCCCCCccHHHH
Q 020423 137 DNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYNQL 214 (326)
Q Consensus 137 ~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~--~~pv~vK~r~g~~~~~~~~e~ 214 (326)
++|.+.|+++.++||+.++++.+..... .| + .++.++..+++++||+++ ++++.+...-+| +.++.
T Consensus 150 e~~~~~a~~~~~~Gf~~vKik~g~~~~~---~~----~-~~~~~~~~e~v~avR~~~g~d~~l~vDan~~~----~~~~a 217 (392)
T 3p3b_A 150 ALMQEEAMQGYAKGQRHFKIKVGRGGRH---MP----L-WEGTKRDIAIVRGISEVAGPAGKIMIDANNAY----NLNLT 217 (392)
T ss_dssp HHHHHHHHHHHHTTCCCEEEECCHHHHT---SC----H-HHHHHHHHHHHHHHHHHHCTTCCEEEECTTCC----CHHHH
T ss_pred HHHHHHHHHHHHhCCCEEEECcCcCccc---CC----c-cccHHHHHHHHHHHHHHhCCCCeEEEECCCCC----CHHHH
Confidence 8999999999999999999987532100 01 1 136788889999999987 466666554444 45566
Q ss_pred HHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcC----CCceEEEeCCCCCHHHHHHHHHhC-
Q 020423 215 CDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF----PDLTFTLNGGINTVDEVNAALRKG- 289 (326)
Q Consensus 215 ~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~----~~iPVIa~GgI~s~~da~~~l~~G- 289 (326)
.++ .+.+++.|+++|. .+ .+ .+++.++++++.. .++||++.+ +.+++++.++++.|
T Consensus 218 i~~-~~~l~~~~i~~iE----~P------------~~-~d~~~~~~l~~~l~~~g~~iPIa~dE-~~~~~~~~~~i~~~~ 278 (392)
T 3p3b_A 218 KEV-LAALSDVNLYWLE----EA------------FH-EDEALYEDLKEWLGQRGQNVLIADGE-GLASPHLIEWATRGR 278 (392)
T ss_dssp HHH-HHHTTTSCEEEEE----CS------------SS-CCHHHHHHHHHHHHHHTCCCEEEECC-SSCCTTHHHHHHTTS
T ss_pred HHH-HHHHHhcCCCEEe----cC------------Cc-ccHHHHHHHHHhhccCCCCccEEecC-CCCHHHHHHHHHcCC
Confidence 664 4557889998874 11 12 2466677776651 389999999 99999999999976
Q ss_pred CChhhh
Q 020423 290 AHHVMV 295 (326)
Q Consensus 290 aD~V~i 295 (326)
+|.|++
T Consensus 279 ~d~v~i 284 (392)
T 3p3b_A 279 VDVLQY 284 (392)
T ss_dssp CCEECC
T ss_pred CCEEEe
Confidence 898887
|
| >4e4f_A Mannonate dehydratase; magnesium binding, enzyme function initiative, isomerase; 2.00A {Pectobacterium carotovorum subsp} | Back alignment and structure |
|---|
Probab=97.86 E-value=0.00017 Score=69.61 Aligned_cols=145 Identities=9% Similarity=0.101 Sum_probs=97.4
Q ss_pred cEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccc----------------------cccCCHHHHH
Q 020423 126 PIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGV----------------------SLMLDPKFVG 183 (326)
Q Consensus 126 piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGg----------------------sl~~r~~~l~ 183 (326)
|+-....+.++++..+.++...+.||..+-+..|.|.... .||. ......++..
T Consensus 140 ~~y~~~~~~~~~~~~~~~~~~~~~Gf~~iKikvG~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (426)
T 4e4f_A 140 MVYCHTTGHSIDEVLDDYAKHRDQGFKAIRVQCGVPGMET----TYGMAKGKGLAYEPATKGSLPEEQLWSTEKYLDFTP 215 (426)
T ss_dssp EEEEEECCSSHHHHHHHHHHHHHTTCSEEEECC-----------------------CCSEESSSCCEEEECHHHHHHHHH
T ss_pred eEeEeCCCCCHHHHHHHHHHHHHcCCCEEEEeccCCcccc----ccccccccccccccccccccccccccchhHHHHHHH
Confidence 4444556678888888888888899999999988664210 0110 0111246778
Q ss_pred HHHHHHHhcC--CCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHH
Q 020423 184 EAMSVIAANT--NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYAL 261 (326)
Q Consensus 184 eiv~avr~~~--~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i 261 (326)
+.+++||+++ ++++.+....+|+ .++..+ +++.+++.|+++|.- + .++.+++.++++
T Consensus 216 e~v~avR~a~G~d~~L~vDaN~~~~----~~~A~~-~~~~L~~~~i~~iEe----P------------~~~~d~~~~~~l 274 (426)
T 4e4f_A 216 KLFEAVRDKFGFNEHLLHDMHHRLT----PIEAAR-FGKSVEDYRLFWMED----P------------TPAENQACFRLI 274 (426)
T ss_dssp HHHHHHHHHHTTSSEEEEECTTCSC----HHHHHH-HHHHTGGGCCSEEEC----C------------SCCSSGGGGHHH
T ss_pred HHHHHHHHHhCCCCEEEEECCCCCC----HHHHHH-HHHHHhhcCCCEEEC----C------------CChHHHHHHHHH
Confidence 9999999988 5677776655553 445555 456778899999851 1 122235556666
Q ss_pred HhcCCCceEEEeCCCCCHHHHHHHHHhC-CChhhhh
Q 020423 262 LRDFPDLTFTLNGGINTVDEVNAALRKG-AHHVMVG 296 (326)
Q Consensus 262 ~~~~~~iPVIa~GgI~s~~da~~~l~~G-aD~V~iG 296 (326)
++. .++||++.+.+.+++++.++++.| +|.|++-
T Consensus 275 ~~~-~~iPIa~dE~~~~~~~~~~~i~~ga~d~v~~k 309 (426)
T 4e4f_A 275 RQH-TVTPIAVGEVFNSIWDCKQLIEEQLIDYIRTT 309 (426)
T ss_dssp HTT-CCSCEEECTTCCSGGGTHHHHHTTCCSEECCC
T ss_pred Hhc-CCCCEEeCCCcCCHHHHHHHHHcCCCCEEEeC
Confidence 665 489999999999999999999966 8988763
|
| >1r0m_A N-acylamino acid racemase; isomerase; 1.30A {Deinococcus radiodurans} SCOP: c.1.11.2 d.54.1.1 PDB: 1xpy_A* 1xs2_A 2ggj_A 2ggi_A 2ggh_A* 2ggg_A* 2fkp_A | Back alignment and structure |
|---|
Probab=97.85 E-value=7.3e-05 Score=70.77 Aligned_cols=120 Identities=9% Similarity=0.069 Sum_probs=88.4
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC-CCcEEEEeccCCCCCccHH
Q 020423 134 SNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYN 212 (326)
Q Consensus 134 ~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~-~~pv~vK~r~g~~~~~~~~ 212 (326)
.+++++.+.|+++.+.||+.+.++.+ | +...+.+++||+++ +.++.+....+|+..
T Consensus 147 ~~~~~~~~~a~~~~~~G~~~iKik~~-~------------------~~d~~~v~avr~a~~~~~l~vDan~~~~~~---- 203 (375)
T 1r0m_A 147 ADEQATVDLVRRHVEQGYRRIKLKIK-P------------------GWDVQPVRATREAFPDIRLTVDANSAYTLA---- 203 (375)
T ss_dssp SSHHHHHHHHHHHHHTTCSCEEEECB-T------------------TBSHHHHHHHHHHCTTSCEEEECTTCCCGG----
T ss_pred CCHHHHHHHHHHHHHhcccEEEEecC-h------------------HHHHHHHHHHHHHcCCCeEEEeCCCCCCHH----
Confidence 48999999999999999999999862 1 11235577777766 567878766666432
Q ss_pred HHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhC-CC
Q 020423 213 QLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKG-AH 291 (326)
Q Consensus 213 e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~G-aD 291 (326)
+ .+ +.+.+++.|+++|. . ..++.+++.++++.++. ++||.+.+.+.+++++.++++.| +|
T Consensus 204 ~-~~-~~~~l~~~~i~~iE----q------------P~~~~d~~~~~~l~~~~-~ipIa~dE~~~~~~~~~~~i~~~~~d 264 (375)
T 1r0m_A 204 D-AG-RLRQLDEYDLTYIE----Q------------PLAWDDLVDHAELARRI-RTPLCLDESVASASDARKALALGAGG 264 (375)
T ss_dssp G-HH-HHHTTGGGCCSCEE----C------------CSCTTCSHHHHHHHHHC-SSCEEESTTCCSHHHHHHHHHHTSCS
T ss_pred H-HH-HHHHHHhCCCcEEE----C------------CCCcccHHHHHHHHHhC-CCCEEecCccCCHHHHHHHHHhCCCC
Confidence 3 34 34557888999885 1 11233467777777665 89999999999999999999865 88
Q ss_pred hhhh
Q 020423 292 HVMV 295 (326)
Q Consensus 292 ~V~i 295 (326)
.|++
T Consensus 265 ~v~i 268 (375)
T 1r0m_A 265 VINL 268 (375)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8887
|
| >3ro6_B Putative chloromuconate cycloisomerase; TIM barrel; 2.20A {Methylococcus capsulatus} PDB: 3rit_A | Back alignment and structure |
|---|
Probab=97.84 E-value=8e-05 Score=70.09 Aligned_cols=137 Identities=10% Similarity=0.061 Sum_probs=100.1
Q ss_pred cEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC--CCcEEEEecc
Q 020423 126 PIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRI 203 (326)
Q Consensus 126 piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~--~~pv~vK~r~ 203 (326)
|+...+...+++++.+.++.+.+.||..+.++.|+ +++.-.+.+++||+.+ +.++.+....
T Consensus 131 ~~~~~~~~~~~~~~~~~a~~~~~~G~~~~K~K~G~-----------------~~~~d~~~v~avR~~~g~~~~l~vDan~ 193 (356)
T 3ro6_B 131 PTSVTIGIKPVEETLAEAREHLALGFRVLKVKLCG-----------------DEEQDFERLRRLHETLAGRAVVRVDPNQ 193 (356)
T ss_dssp EBCEEECSCCHHHHHHHHHHHHHTTCCEEEEECCS-----------------CHHHHHHHHHHHHHHHTTSSEEEEECTT
T ss_pred eeeEEEcCCCHHHHHHHHHHHHHcCCCEEEEEeCC-----------------CHHHHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 34445666789999999999999999999998753 2555677888999887 5677777666
Q ss_pred CCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHH
Q 020423 204 GVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVN 283 (326)
Q Consensus 204 g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~ 283 (326)
+|+ .++..+ +.+.+++.|+++|. . ..++.+++.++++.++. ++||++.+.+.+++++.
T Consensus 194 ~~~----~~~a~~-~~~~l~~~~i~~iE----q------------P~~~~d~~~~~~l~~~~-~iPIa~dE~~~~~~~~~ 251 (356)
T 3ro6_B 194 SYD----RDGLLR-LDRLVQELGIEFIE----Q------------PFPAGRTDWLRALPKAI-RRRIAADESLLGPADAF 251 (356)
T ss_dssp CCC----HHHHHH-HHHHHHHTTCCCEE----C------------CSCTTCHHHHHTSCHHH-HHTEEESTTCCSHHHHH
T ss_pred CCC----HHHHHH-HHHHHHhcCCCEEE----C------------CCCCCcHHHHHHHHhcC-CCCEEeCCcCCCHHHHH
Confidence 664 334444 34567789999885 1 11233466666665553 79999999999999999
Q ss_pred HHHHh--CCChhhhhHHHHh
Q 020423 284 AALRK--GAHHVMVGRAAYQ 301 (326)
Q Consensus 284 ~~l~~--GaD~V~iGRall~ 301 (326)
++++. .+|.|++--.-..
T Consensus 252 ~~~~~~~~~d~v~~k~~~~G 271 (356)
T 3ro6_B 252 ALAAPPAACGIFNIKLMKCG 271 (356)
T ss_dssp HHHSSSCSCSEEEECHHHHC
T ss_pred HHHhcCCcCCEEEEcccccC
Confidence 99984 5999988655443
|
| >3mqt_A Mandelate racemase/muconate lactonizing protein; PSI-II, NYSGXRC, muconate lactonizing EN structural genomics, protein structure initiative; 2.10A {Shewanella pealeana} | Back alignment and structure |
|---|
Probab=97.83 E-value=0.00018 Score=68.57 Aligned_cols=124 Identities=8% Similarity=-0.060 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHCCCCEEEec-CCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC--CCcEEEEeccCCCCCccHHHH
Q 020423 138 NLAKATELANAYNYDEINLN-CGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYNQL 214 (326)
Q Consensus 138 ~f~~aA~~a~~aG~d~Iein-~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~--~~pv~vK~r~g~~~~~~~~e~ 214 (326)
++++.++.+.+.||..+-++ .|.+ + .+++.-.+++++||+++ ++++.+....+|. +.++.
T Consensus 155 ~~~~~a~~~~~~G~~~~K~~k~g~~----------~----~~~~~d~~~v~avR~a~G~d~~l~vDan~~~~---~~~~A 217 (394)
T 3mqt_A 155 AYKPLIAKAKERGAKAVKVCIIPND----------K----VSDKEIVAYLRELREVIGWDMDMMVDCLYRWT---DWQKA 217 (394)
T ss_dssp HHHHHHHHHHHTTCSEEEEECCCCT----------T----SCHHHHHHHHHHHHHHHCSSSEEEEECTTCCS---CHHHH
T ss_pred HHHHHHHHHHHcCCCEEEecccCCC----------c----cCHHHHHHHHHHHHHHhCCCCeEEEECCCCCC---CHHHH
Confidence 67778888889999999994 3311 0 24677788999999987 4677777665552 23455
Q ss_pred HHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhC-CChh
Q 020423 215 CDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKG-AHHV 293 (326)
Q Consensus 215 ~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~G-aD~V 293 (326)
.+ +++.+++.|+++|. . ..++.+++.++++++.. ++||++.+.+.+++++.++++.| +|.|
T Consensus 218 ~~-~~~~L~~~~i~~iE----e------------P~~~~~~~~~~~l~~~~-~iPIa~dE~~~~~~~~~~~l~~~~~d~v 279 (394)
T 3mqt_A 218 RW-TFRQLEDIDLYFIE----A------------CLQHDDLIGHQKLAAAI-NTRLCGAEMSTTRFEAQEWLEKTGISVV 279 (394)
T ss_dssp HH-HHHHTGGGCCSEEE----S------------CSCTTCHHHHHHHHHHS-SSEEEECTTCCHHHHHHHHHHHHCCSEE
T ss_pred HH-HHHHHhhcCCeEEE----C------------CCCcccHHHHHHHHhhC-CCCEEeCCCcCCHHHHHHHHHcCCCCeE
Confidence 55 45677889999985 1 11233577777777765 89999999999999999999854 8988
Q ss_pred hhh
Q 020423 294 MVG 296 (326)
Q Consensus 294 ~iG 296 (326)
++-
T Consensus 280 ~~k 282 (394)
T 3mqt_A 280 QSD 282 (394)
T ss_dssp CCC
T ss_pred ecC
Confidence 874
|
| >1xi3_A Thiamine phosphate pyrophosphorylase; structural genomics, southeast collaboratory for structural genomics, hyperthermophIle; 1.70A {Pyrococcus furiosus} SCOP: c.1.3.1 | Back alignment and structure |
|---|
Probab=97.82 E-value=3e-05 Score=67.17 Aligned_cols=74 Identities=15% Similarity=0.087 Sum_probs=56.1
Q ss_pred hhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhC
Q 020423 223 SLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN 302 (326)
Q Consensus 223 e~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~d 302 (326)
.+.|+|++.+++.... +..+ ...+..|+.+.++.+.. ++||++.|||+ ++++.++++.|+|+|.+|++++..
T Consensus 125 ~~~g~d~i~~~~~~~~--~~~~----~~~~~~~~~l~~l~~~~-~~pvia~GGI~-~~nv~~~~~~Ga~gv~vgs~i~~~ 196 (215)
T 1xi3_A 125 EKKGADYLGAGSVFPT--KTKE----DARVIGLEGLRKIVESV-KIPVVAIGGIN-KDNAREVLKTGVDGIAVISAVMGA 196 (215)
T ss_dssp HHHTCSEEEEECSSCC----------CCCCCHHHHHHHHHHHC-SSCEEEESSCC-TTTHHHHHTTTCSEEEESHHHHTS
T ss_pred HhcCCCEEEEcCCccC--CCCC----CCCCcCHHHHHHHHHhC-CCCEEEECCcC-HHHHHHHHHcCCCEEEEhHHHhCC
Confidence 3579999998753211 1000 01234588888877665 89999999998 999999999999999999999987
Q ss_pred Cc
Q 020423 303 PW 304 (326)
Q Consensus 303 P~ 304 (326)
|+
T Consensus 197 ~d 198 (215)
T 1xi3_A 197 ED 198 (215)
T ss_dssp SS
T ss_pred CC
Confidence 76
|
| >2zc8_A N-acylamino acid racemase; octamer, TIM beta/alpha-barrel, metal-binding, metal binding; 1.95A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.81 E-value=0.0001 Score=69.57 Aligned_cols=120 Identities=11% Similarity=0.100 Sum_probs=88.5
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC-CCcEEEEeccCCCCCccHH
Q 020423 134 SNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYN 212 (326)
Q Consensus 134 ~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~-~~pv~vK~r~g~~~~~~~~ 212 (326)
.+++++.+.|+++.+.||+.+.++.+ | +...+.+++||+.+ +.++.+....+|+..
T Consensus 140 ~~~~~~~~~a~~~~~~G~~~iKik~~-~------------------~~d~~~v~avr~a~~~~~l~vDan~~~~~~---- 196 (369)
T 2zc8_A 140 PSVEDTLRVVERHLEEGYRRIKLKIK-P------------------GWDYEVLKAVREAFPEATLTADANSAYSLA---- 196 (369)
T ss_dssp SSHHHHHHHHHHHHHTTCSCEEEECB-T------------------TBSHHHHHHHHHHCTTSCEEEECTTCCCGG----
T ss_pred CCHHHHHHHHHHHHHhhhheeeeecC-h------------------hHHHHHHHHHHHHcCCCeEEEecCCCCCHH----
Confidence 47999999999999999999999862 1 11235577777766 567777766666432
Q ss_pred HHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhC-CC
Q 020423 213 QLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKG-AH 291 (326)
Q Consensus 213 e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~G-aD 291 (326)
+ .+ +.+.+++.|+++|. .+ .++.+++.++++.++. ++||.+.+.+.+++++.++++.| +|
T Consensus 197 ~-~~-~~~~l~~~~i~~iE----qP------------~~~~d~~~~~~l~~~~-~ipIa~dE~~~~~~~~~~~i~~~~~d 257 (369)
T 2zc8_A 197 N-LA-QLKRLDELRLDYIE----QP------------LAYDDLLDHAKLQREL-STPICLDESLTGAEKARKAIELGAGR 257 (369)
T ss_dssp G-HH-HHHGGGGGCCSCEE----CC------------SCTTCSHHHHHHHHHC-SSCEEESTTCCSHHHHHHHHHHTCCS
T ss_pred H-HH-HHHHHHhCCCcEEE----CC------------CCcccHHHHHHHHhhC-CCCEEEcCccCCHHHHHHHHHhCCCC
Confidence 3 34 34567888999886 11 1233466677777665 89999999999999999999966 89
Q ss_pred hhhh
Q 020423 292 HVMV 295 (326)
Q Consensus 292 ~V~i 295 (326)
.|++
T Consensus 258 ~v~i 261 (369)
T 2zc8_A 258 VFNV 261 (369)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8887
|
| >3toy_A Mandelate racemase/muconate lactonizing enzyme FA protein; enolase, magnesium binding site, lyase; HET: P4C; 1.80A {Bradyrhizobium SP} PDB: 3tte_A* | Back alignment and structure |
|---|
Probab=97.81 E-value=0.00064 Score=64.56 Aligned_cols=133 Identities=10% Similarity=0.030 Sum_probs=96.9
Q ss_pred cEEEEecCCCHHHHHHHHHHHHHC-CCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC--CCcEEEEec
Q 020423 126 PIVLQIGGSNLDNLAKATELANAY-NYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCR 202 (326)
Q Consensus 126 piivQL~g~~~~~f~~aA~~a~~a-G~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~--~~pv~vK~r 202 (326)
|+-..+...+++++.+.++.+.+. ||..+-+..|.+ +++.-.+.+++||+++ +.++.+...
T Consensus 158 ~~y~s~g~~~~e~~~~~a~~~~~~~G~~~~KlKvG~~----------------~~~~d~~~v~avR~a~G~~~~l~vDaN 221 (383)
T 3toy_A 158 PAYDSYGVLDARDDERTLRTACDEHGFRAIKSKGGHG----------------DLATDEAMIKGLRALLGPDIALMLDFN 221 (383)
T ss_dssp EEEEECSSCCHHHHHHHHHHHHHTSCCCEEEEECCSS----------------CHHHHHHHHHHHHHHHCTTSEEEEECT
T ss_pred EEeEecCCCCHHHHHHHHHHHHHccCCcEEEEecCCC----------------CHHHHHHHHHHHHHHhCCCCeEEEeCC
Confidence 344444346899999999998888 999999986532 2555677888999887 456777666
Q ss_pred cCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHH
Q 020423 203 IGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEV 282 (326)
Q Consensus 203 ~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da 282 (326)
.+|+ .++..+ +.+.+++.|+++|. . ..++.+++.++++.+.. ++||.+...+.+++++
T Consensus 222 ~~~~----~~~A~~-~~~~l~~~~i~~iE----e------------P~~~~d~~~~~~l~~~~-~iPIa~dE~~~~~~~~ 279 (383)
T 3toy_A 222 QSLD----PAEATR-RIARLADYDLTWIE----E------------PVPQENLSGHAAVRERS-EIPIQAGENWWFPRGF 279 (383)
T ss_dssp TCSC----HHHHHH-HHHHHGGGCCSEEE----C------------CSCTTCHHHHHHHHHHC-SSCEEECTTCCHHHHH
T ss_pred CCCC----HHHHHH-HHHHHHhhCCCEEE----C------------CCCcchHHHHHHHHhhc-CCCEEeCCCcCCHHHH
Confidence 5554 445445 35567888999884 1 11233577777877765 8999999999999999
Q ss_pred HHHHHhC-CChhhhh
Q 020423 283 NAALRKG-AHHVMVG 296 (326)
Q Consensus 283 ~~~l~~G-aD~V~iG 296 (326)
.++++.| +|.|++-
T Consensus 280 ~~~i~~~a~d~v~ik 294 (383)
T 3toy_A 280 AEAIAAGASDFIMPD 294 (383)
T ss_dssp HHHHHHTCCSEECCC
T ss_pred HHHHHcCCCCEEEeC
Confidence 9999865 8888763
|
| >3ugv_A Enolase; enzyme function initiative, EFI, lyase; 2.30A {Alpha proteobacterium BAL199} | Back alignment and structure |
|---|
Probab=97.80 E-value=0.00055 Score=65.20 Aligned_cols=128 Identities=17% Similarity=0.180 Sum_probs=95.6
Q ss_pred CCHHHHHHHHHHHHHC---CCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC--CCcEEEEeccCCCCC
Q 020423 134 SNLDNLAKATELANAY---NYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDH 208 (326)
Q Consensus 134 ~~~~~f~~aA~~a~~a---G~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~--~~pv~vK~r~g~~~~ 208 (326)
.+++++.+.++.+.+. ||..+-+..|.+ +++.-.+.+++||+++ +.++.+....+|+
T Consensus 170 ~~~e~~~~~a~~~~~~~~~G~~~iKlKvG~~----------------~~~~d~~~v~avR~a~G~~~~l~vDaN~~~~-- 231 (390)
T 3ugv_A 170 SPAEVAAEAVELKAEGQGTGFKGLKLRMGRD----------------DPAVDIETAEAVWDAVGRDTALMVDFNQGLD-- 231 (390)
T ss_dssp CHHHHHHHHHHHHHTTCTTCCSEEEEECCCS----------------SHHHHHHHHHHHHHHHCTTSEEEEECTTCCC--
T ss_pred CCHHHHHHHHHHHHHhhhCCCcEEEEecCCC----------------CHHHHHHHHHHHHHHhCCCCEEEEECCCCCC--
Confidence 5789999999998888 999999986532 2555667888999887 4567777665554
Q ss_pred ccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHh
Q 020423 209 DSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRK 288 (326)
Q Consensus 209 ~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~ 288 (326)
.++..+ +.+.+++.|+++|. . ..++.+++.++++.+.. ++||.+...+.+++++.++++.
T Consensus 232 --~~~A~~-~~~~l~~~~i~~iE----q------------P~~~~d~~~~~~l~~~~-~iPIa~dE~~~~~~~~~~~i~~ 291 (390)
T 3ugv_A 232 --MAEAMH-RTRQIDDLGLEWIE----E------------PVVYDNFDGYAQLRHDL-KTPLMIGENFYGPREMHQALQA 291 (390)
T ss_dssp --HHHHHH-HHHHHTTSCCSEEE----C------------CSCTTCHHHHHHHHHHC-SSCEEECTTCCSHHHHHHHHHT
T ss_pred --HHHHHH-HHHHHHhhCCCEEE----C------------CCCcccHHHHHHHHHhc-CCCEEeCCCcCCHHHHHHHHHc
Confidence 445445 45567889999884 1 11233577777877765 8999999999999999999996
Q ss_pred C-CChhhhhHHH
Q 020423 289 G-AHHVMVGRAA 299 (326)
Q Consensus 289 G-aD~V~iGRal 299 (326)
| +|.|++--.-
T Consensus 292 ~a~d~v~ik~~~ 303 (390)
T 3ugv_A 292 GACDLVMPDFMR 303 (390)
T ss_dssp TCCSEECCBHHH
T ss_pred CCCCEEEeCccc
Confidence 5 8998875443
|
| >3t6c_A RSPA, putative MAND family dehydratase; enolase, mannonate dehydratase related protein, enzyme funct intitiative, lyase, hydro-lyases; HET: GCO; 1.60A {Pantoea ananatis} PDB: 3tw9_A 3twa_A 3twb_A* | Back alignment and structure |
|---|
Probab=97.79 E-value=0.00093 Score=64.63 Aligned_cols=152 Identities=9% Similarity=0.039 Sum_probs=102.2
Q ss_pred cEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcc----------cCCCC------------ccccc--cCCHHH
Q 020423 126 PIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKV----------AGHGC------------FGVSL--MLDPKF 181 (326)
Q Consensus 126 piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~----------~r~d~------------yGgsl--~~r~~~ 181 (326)
|+-..+.+.+++++++.++.+.+.||..+-+..|...... ...+. -|..+ ....+.
T Consensus 146 ~~y~~~~~~~~e~~~~~a~~~~~~Gf~~~K~KvG~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (440)
T 3t6c_A 146 ALYVHTDGADEVEVEDSARAKMEEGYQYIRCQMGMYGGAGTDDLRLIANRMVKAKNIQPKRSPRTKAPGIYFDPEAYAKS 225 (440)
T ss_dssp EEEEEECCSSHHHHHHHHHHHHHTTCSEEEECSSSSTTCCBCCHHHHSSCBCCCSSCCCCCCCSSCCSSEECCHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHHHHHcCCCEEEEeeccCCccccccccccccccccccccccccccccccccccccchhhHHH
Confidence 3333455678999999999999999999999887422000 00000 00000 011466
Q ss_pred HHHHHHHHHhcC--CCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHH
Q 020423 182 VGEAMSVIAANT--NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYY 259 (326)
Q Consensus 182 l~eiv~avr~~~--~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~ 259 (326)
..+.+++||+++ +.++.+....+|+ .++..+ +++.+++.|+++|. . ..++.+++.++
T Consensus 226 d~~~v~avR~a~G~d~~L~vDaN~~~~----~~~A~~-~~~~L~~~~i~~iE----e------------P~~~~d~~~~~ 284 (440)
T 3t6c_A 226 IPRLFDHLRNKLGFSVELLHDAHERIT----PINAIH-MAKALEPYQLFFLE----D------------PVAPENTEWLK 284 (440)
T ss_dssp HHHHHHHHHHHHCSSSEEEEECTTCSC----HHHHHH-HHHHTGGGCCSEEE----C------------SSCGGGGGGHH
T ss_pred HHHHHHHHHHhcCCCCeEEEECCCCCC----HHHHHH-HHHHhhhcCCCEEE----C------------CCChhhHHHHH
Confidence 788899999987 4677777666664 345455 45567888999985 1 11233456667
Q ss_pred HHHhcCCCceEEEeCCCCCHHHHHHHHHhC-CChhhhhHHH
Q 020423 260 ALLRDFPDLTFTLNGGINTVDEVNAALRKG-AHHVMVGRAA 299 (326)
Q Consensus 260 ~i~~~~~~iPVIa~GgI~s~~da~~~l~~G-aD~V~iGRal 299 (326)
++.+.. ++||.+...+.+.+++.++++.| +|.|++--.-
T Consensus 285 ~l~~~~-~iPIa~dE~~~~~~~~~~~i~~~a~d~v~~k~~~ 324 (440)
T 3t6c_A 285 MLRQQS-STPIAMGELFVNVNEWKPLIDNKLIDYIRCHISS 324 (440)
T ss_dssp HHHHHC-CSCEEECTTCCSHHHHHHHHHTTCCSEECCCGGG
T ss_pred HHHhhc-CCCEEeCcccCCHHHHHHHHHcCCccceeechhh
Confidence 777664 89999999999999999999965 8988875443
|
| >3q45_A Mandelate racemase/muconate lactonizing enzyme FA possible chloromuconate cycloisomerase...; (beta/alpha)8-barrel; 3.00A {Cytophaga hutchinsonii} PDB: 3q4d_A | Back alignment and structure |
|---|
Probab=97.78 E-value=0.00036 Score=65.89 Aligned_cols=129 Identities=6% Similarity=0.092 Sum_probs=94.3
Q ss_pred EEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC--CCcEEEEeccCCC
Q 020423 129 LQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVD 206 (326)
Q Consensus 129 vQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~--~~pv~vK~r~g~~ 206 (326)
..+...+++++.+.++.+.+.||..+-++.|. +++.-.+.+++||+++ +.++.+....+|+
T Consensus 134 ~~~~~~~~e~~~~~a~~~~~~G~~~~K~KvG~-----------------~~~~d~~~v~avR~~~g~~~~l~vDaN~~~~ 196 (368)
T 3q45_A 134 YTVSIDEPHKMAADAVQIKKNGFEIIKVKVGG-----------------SKELDVERIRMIREAAGDSITLRIDANQGWS 196 (368)
T ss_dssp EEECSCCHHHHHHHHHHHHHTTCSEEEEECCS-----------------CHHHHHHHHHHHHHHHCSSSEEEEECTTCBC
T ss_pred EEecCCCHHHHHHHHHHHHHcCCCeEEEEecC-----------------CHHHHHHHHHHHHHHhCCCCeEEEECCCCCC
Confidence 44555789999999999999999999998652 2455567889999887 4566666555543
Q ss_pred CCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHH
Q 020423 207 DHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAAL 286 (326)
Q Consensus 207 ~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l 286 (326)
.++..+ +.+.+++.|+++|. . ..++.+++.++++.++. ++||.+.+.+.+++++.+++
T Consensus 197 ----~~~A~~-~~~~l~~~~i~~iE----q------------P~~~~~~~~~~~l~~~~-~iPIa~dE~~~~~~~~~~~~ 254 (368)
T 3q45_A 197 ----VETAIE-TLTLLEPYNIQHCE----E------------PVSRNLYTALPKIRQAC-RIPIMADESCCNSFDAERLI 254 (368)
T ss_dssp ----HHHHHH-HHHHHGGGCCSCEE----C------------CBCGGGGGGHHHHHHTC-SSCEEESTTCCSHHHHHHHH
T ss_pred ----hHHHHH-HHHHHhhcCCCEEE----C------------CCChhHHHHHHHHHhhC-CCCEEEcCCcCCHHHHHHHH
Confidence 445555 35567888999885 1 11233455666776664 89999999999999999999
Q ss_pred HhC-CChhhhh
Q 020423 287 RKG-AHHVMVG 296 (326)
Q Consensus 287 ~~G-aD~V~iG 296 (326)
+.| +|.|++=
T Consensus 255 ~~~~~d~v~~k 265 (368)
T 3q45_A 255 QIQACDSFNLK 265 (368)
T ss_dssp HTTCCSEEEEC
T ss_pred HcCCCCeEEec
Confidence 955 8888764
|
| >3mkc_A Racemase; metabolic process, PSI2, NYSGXRC, structu genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; 1.77A {Pseudovibrio SP} PDB: 3nzg_A | Back alignment and structure |
|---|
Probab=97.77 E-value=0.00026 Score=67.51 Aligned_cols=124 Identities=12% Similarity=-0.018 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHCCCCEEEec-CCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC--CCcEEEEeccCCCCCccHHHH
Q 020423 138 NLAKATELANAYNYDEINLN-CGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYNQL 214 (326)
Q Consensus 138 ~f~~aA~~a~~aG~d~Iein-~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~--~~pv~vK~r~g~~~~~~~~e~ 214 (326)
++++.++.+.+.||..+-++ .|.+. .+++.-.+.+++||+++ ++++.+....+|. +.++.
T Consensus 160 ~~~~~a~~~~~~G~~~~K~~k~g~~~--------------~~~~~d~e~v~avR~a~G~d~~l~vDaN~~~~---~~~~A 222 (394)
T 3mkc_A 160 GYAPLLEKAKAHNIRAVKVCVPIKAD--------------WSTKEVAYYLRELRGILGHDTDMMVDYLYRFT---DWYEV 222 (394)
T ss_dssp HHHHHHHHHHHTTCSEEEEECCTTCC--------------CCHHHHHHHHHHHHHHHCSSSEEEEECTTCCC---CHHHH
T ss_pred HHHHHHHHHHHcCCCEEEeCccCCCc--------------cCHHHHHHHHHHHHHHhCCCCeEEEeCCCCCC---CHHHH
Confidence 67778888889999999994 43210 24677788999999987 4677776655552 34455
Q ss_pred HHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhC-CChh
Q 020423 215 CDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKG-AHHV 293 (326)
Q Consensus 215 ~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~G-aD~V 293 (326)
.+ +++.+++.|+++|. . ..++.+++.++++++.. ++||++.+.+.+++++.++++.| +|.|
T Consensus 223 ~~-~~~~L~~~~i~~iE----e------------P~~~~d~~~~~~l~~~~-~iPIa~dE~~~~~~~~~~~l~~~~~d~v 284 (394)
T 3mkc_A 223 AR-LLNSIEDLELYFAE----A------------TLQHDDLSGHAKLVENT-RSRICGAEMSTTRFEAEEWITKGKVHLL 284 (394)
T ss_dssp HH-HHHHTGGGCCSEEE----S------------CSCTTCHHHHHHHHHHC-SSCBEECTTCCHHHHHHHHHHTTCCSEE
T ss_pred HH-HHHHhhhcCCeEEE----C------------CCCchhHHHHHHHHhhC-CCCEEeCCCCCCHHHHHHHHHcCCCCeE
Confidence 55 45567889999985 1 11233577777777765 89999999999999999999965 8988
Q ss_pred hhh
Q 020423 294 MVG 296 (326)
Q Consensus 294 ~iG 296 (326)
++-
T Consensus 285 ~~k 287 (394)
T 3mkc_A 285 QSD 287 (394)
T ss_dssp CCC
T ss_pred ecC
Confidence 873
|
| >2p10_A MLL9387 protein; putative phosphonopyruvate hydrolase, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.15A {Mesorhizobium loti} SCOP: c.1.12.9 | Back alignment and structure |
|---|
Probab=97.76 E-value=5.2e-05 Score=68.39 Aligned_cols=162 Identities=12% Similarity=0.080 Sum_probs=90.4
Q ss_pred CCcEEEEecCCCHH-HHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC--CCcEEEE
Q 020423 124 QHPIVLQIGGSNLD-NLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVK 200 (326)
Q Consensus 124 ~~piivQL~g~~~~-~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~--~~pv~vK 200 (326)
+.|++.|+.+.+|- ......+.++++||.|| +|+. ..- .-.+.|...|+.+.--..+.++.|+++- |.- ++=
T Consensus 94 ~iPV~Agv~~~DP~~~~g~~Le~lk~~Gf~Gv-~N~p--tvg-lidG~fr~~LEE~gm~~~~eve~I~~A~~~gL~-Ti~ 168 (286)
T 2p10_A 94 HTPVLAGVNGTDPFMVMSTFLRELKEIGFAGV-QNFP--TVG-LIDGLFRQNLEETGMSYAQEVEMIAEAHKLDLL-TTP 168 (286)
T ss_dssp SSCEEEEECTTCTTCCHHHHHHHHHHHTCCEE-EECS--CGG-GCCHHHHHHHHHTTCCHHHHHHHHHHHHHTTCE-ECC
T ss_pred CCCEEEEECCcCCCcCHHHHHHHHHHhCCceE-EECC--Ccc-cccchhhhhHhhcCCCHHHHHHHHHHHHHCCCe-EEE
Confidence 67999998877652 23344488899999999 9973 110 1123344444443333344444444332 221 111
Q ss_pred eccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCcc-HHHH----HHHHhcCCCceEEEeC-
Q 020423 201 CRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLK-YEYY----YALLRDFPDLTFTLNG- 274 (326)
Q Consensus 201 ~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~-~~~i----~~i~~~~~~iPVIa~G- 274 (326)
+- .+.++. +.+.++|.|.|.+|.+... +|.-+... ...... -+.+ ..+++..+++.|+.-|
T Consensus 169 ~v------~~~eeA-----~amA~agpDiI~~h~glT~-gglIG~~~-avs~~~~~e~i~~i~~a~~~vnpdvivLc~gG 235 (286)
T 2p10_A 169 YV------FSPEDA-----VAMAKAGADILVCHMGLTT-GGAIGARS-GKSMDDCVSLINECIEAARTIRDDIIILSHGG 235 (286)
T ss_dssp EE------CSHHHH-----HHHHHHTCSEEEEECSCC-----------CCCHHHHHHHHHHHHHHHHHHCSCCEEEEEST
T ss_pred ec------CCHHHH-----HHHHHcCCCEEEECCCCCC-CCcccCCC-cccHHHhHHHHHHHHHHHHHhCCCcEEEecCC
Confidence 11 123332 2234689999999976321 12211110 001111 1222 2233334677777666
Q ss_pred CCCCHHHHHHHHHh--CCChhhhhHHHHhCC
Q 020423 275 GINTVDEVNAALRK--GAHHVMVGRAAYQNP 303 (326)
Q Consensus 275 gI~s~~da~~~l~~--GaD~V~iGRall~dP 303 (326)
+|.+++|+..+++. |+|++..++++..=|
T Consensus 236 pIstpeDv~~~l~~t~G~~G~~gASsier~p 266 (286)
T 2p10_A 236 PIANPEDARFILDSCQGCHGFYGASSMERLP 266 (286)
T ss_dssp TCCSHHHHHHHHHHCTTCCEEEESHHHHHHH
T ss_pred CCCCHHHHHHHHhcCCCccEEEeehhhhcCC
Confidence 99999999999997 999999999998766
|
| >3my9_A Muconate cycloisomerase; structural genomics, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics, nysgx; 2.20A {Azorhizobium caulinodans} | Back alignment and structure |
|---|
Probab=97.75 E-value=0.00044 Score=65.52 Aligned_cols=134 Identities=7% Similarity=0.062 Sum_probs=97.0
Q ss_pred EEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC--CCcEEEEeccCCC
Q 020423 129 LQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVD 206 (326)
Q Consensus 129 vQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~--~~pv~vK~r~g~~ 206 (326)
..+...++++..+.++.+.+.||..+-+..|.. .++.-.+.+++||+.+ +.++.+....+|+
T Consensus 140 ~t~~~~~~~~~~~~a~~~~~~G~~~~K~Kvg~~----------------~~~~d~~~v~avR~~~g~~~~l~vDan~~~~ 203 (377)
T 3my9_A 140 FSIADPDFDADLERMRAMVPAGHTVFKMKTGVK----------------PHAEELRILETMRGEFGERIDLRLDFNQALT 203 (377)
T ss_dssp EEECCSSHHHHHHHHHHHTTTTCCEEEEECSSS----------------CHHHHHHHHHHHHHHHGGGSEEEEECTTCCC
T ss_pred EecCCCCHHHHHHHHHHHHHcCCCEEEEccCCC----------------cHHHHHHHHHHHHHHhCCCCeEEEeCCCCcC
Confidence 344445788888888888888999999986531 2445567888888876 5678888777776
Q ss_pred CCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHH
Q 020423 207 DHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAAL 286 (326)
Q Consensus 207 ~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l 286 (326)
..+ ..+ +.+.+++.|+++|. . ..++.+++.++++.++. ++||.+.+.+.+++++.+++
T Consensus 204 ~~~----A~~-~~~~l~~~~i~~iE----q------------P~~~~d~~~~~~l~~~~-~ipIa~dE~~~~~~~~~~~i 261 (377)
T 3my9_A 204 PFG----AMK-ILRDVDAFRPTFIE----Q------------PVPRRHLDAMAGFAAAL-DTPILADESCFDAVDLMEVV 261 (377)
T ss_dssp TTT----HHH-HHHHHHTTCCSCEE----C------------CSCTTCHHHHHHHHHHC-SSCEEESTTCSSHHHHHHHH
T ss_pred HHH----HHH-HHHHHhhcCCCEEE----C------------CCCccCHHHHHHHHHhC-CCCEEECCccCCHHHHHHHH
Confidence 432 223 34566788998884 1 11233577778887765 89999999999999999999
Q ss_pred HhC-CChhhhhHHHH
Q 020423 287 RKG-AHHVMVGRAAY 300 (326)
Q Consensus 287 ~~G-aD~V~iGRall 300 (326)
+.| +|.|++--.-.
T Consensus 262 ~~~~~d~v~~k~~~~ 276 (377)
T 3my9_A 262 RRQAADAISVKIMKC 276 (377)
T ss_dssp HHTCCSEEECCHHHH
T ss_pred HcCCCCEEEeccccc
Confidence 855 99988754443
|
| >3tha_A Tryptophan synthase alpha chain; structural genomics, center for structural genomics of infec diseases, csgid, lyase; 2.37A {Campylobacter jejuni} | Back alignment and structure |
|---|
Probab=97.75 E-value=3.4e-05 Score=69.08 Aligned_cols=166 Identities=16% Similarity=0.094 Sum_probs=91.0
Q ss_pred cEEEEecC--CCHHHHHHHHHHHHHCCCCEEEecCC--CCCCc---cc----CCCCccccccCCHHHHHHHHHHHHhcCC
Q 020423 126 PIVLQIGG--SNLDNLAKATELANAYNYDEINLNCG--CPSPK---VA----GHGCFGVSLMLDPKFVGEAMSVIAANTN 194 (326)
Q Consensus 126 piivQL~g--~~~~~f~~aA~~a~~aG~d~Iein~g--~P~~~---~~----r~d~yGgsl~~r~~~l~eiv~avr~~~~ 194 (326)
.++.=+.. .+.+...+.++.+.++|+|.|||.+- -|... ++ |--+-| -+.+.+.++++++|+.
T Consensus 15 ali~yitaG~P~~~~t~~~~~~l~~~GaD~iElGiPfSDP~aDGpvIq~a~~rAL~~g----~~~~~~~~~~~~~r~~-- 88 (252)
T 3tha_A 15 ANVAYTVLGYPNLQTSEAFLQRLDQSPIDILELGVAYSDPIADGEIIADAAKIALDQG----VDIHSVFELLARIKTK-- 88 (252)
T ss_dssp EEEEEEETTSSCHHHHHHHHHTGGGSSCSEEEEECCCSCCCSCCCHHHHHHHHHHHTT----CCHHHHHHHHHHCCCS--
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCcHHHHHHHHHHHHCC----CCHHHHHHHHHHHhcC--
Confidence 34444432 56789999999999999999999753 23210 00 000001 2457778888888765
Q ss_pred CcEEEEe------ccCCCCC----------------ccHHHHHHHHHHHhhhCCccEEEEecC-Cc---------ccC--
Q 020423 195 VPVSVKC------RIGVDDH----------------DSYNQLCDFIYKVSSLSPTRHFIIHSR-KA---------LLN-- 240 (326)
Q Consensus 195 ~pv~vK~------r~g~~~~----------------~~~~e~~~~ia~~le~~Gvd~I~v~~~-~~---------~~~-- 240 (326)
.|+.+=. +.|.+.. ..++|.. .+.+.+++.|++.|.+-.. +. .-.
T Consensus 89 ~Pivlm~Y~N~i~~~G~e~F~~~~~~aGvdG~IipDLP~eE~~-~~~~~~~~~Gl~~I~lvaP~t~~eRi~~ia~~a~gF 167 (252)
T 3tha_A 89 KALVFMVYYNLIFSYGLEKFVKKAKSLGICALIVPELSFEESD-DLIKECERYNIALITLVSVTTPKERVKKLVKHAKGF 167 (252)
T ss_dssp SEEEEECCHHHHHHHCHHHHHHHHHHTTEEEEECTTCCGGGCH-HHHHHHHHTTCEECEEEETTSCHHHHHHHHTTCCSC
T ss_pred CCEEEEeccCHHHHhhHHHHHHHHHHcCCCEEEeCCCCHHHHH-HHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHhCCCe
Confidence 5765521 1110000 0011111 1223344556665553211 10 000
Q ss_pred -------CCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHh
Q 020423 241 -------GISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 301 (326)
Q Consensus 241 -------g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~ 301 (326)
|.++... .......+.+.++++. .++||+..+||.+++++.++.+ +||+|.+|++++.
T Consensus 168 iY~Vs~~GvTG~~~-~~~~~~~~~v~~vr~~-~~~Pv~vGfGIst~e~a~~~~~-~ADGVIVGSAiVk 232 (252)
T 3tha_A 168 IYLLASIGITGTKS-VEEAILQDKVKEIRSF-TNLPIFVGFGIQNNQDVKRMRK-VADGVIVGTSIVK 232 (252)
T ss_dssp EEEECCSCSSSCSH-HHHHHHHHHHHHHHTT-CCSCEEEESSCCSHHHHHHHTT-TSSEEEECHHHHH
T ss_pred EEEEecCCCCCccc-CCCHHHHHHHHHHHHh-cCCcEEEEcCcCCHHHHHHHHh-cCCEEEECHHHHH
Confidence 1122110 0000012355555544 5899999999999999998766 6999999999975
|
| >3gd6_A Muconate cycloisomerase; structural genomics, NYSGXRC, target 9375A, divergent enolase, lyase, PSI-2; 1.60A {Oceanobacillus iheyensis HTE831} PDB: 2oqy_A 3es8_A 3es7_A 3fyy_A 3hpf_A* | Back alignment and structure |
|---|
Probab=97.74 E-value=0.00041 Score=66.08 Aligned_cols=131 Identities=9% Similarity=0.066 Sum_probs=98.0
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC--CCcEE-EEeccCCCCCc
Q 020423 133 GSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVS-VKCRIGVDDHD 209 (326)
Q Consensus 133 g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~--~~pv~-vK~r~g~~~~~ 209 (326)
..+++++++.++.+.+.||+.+.++.|+ +++.-.+.+++||+++ ++++. +....+|+
T Consensus 140 ~~~~e~~~~~a~~~~~~G~~~~KiKvG~-----------------~~~~d~~~v~avR~a~g~~~~l~~vDan~~~~--- 199 (391)
T 3gd6_A 140 SEEVESNLDVVRQKLEQGFDVFRLYVGK-----------------NLDADEEFLSRVKEEFGSRVRIKSYDFSHLLN--- 199 (391)
T ss_dssp TTHHHHHHHHHHHHHHTTCCEEEEECSS-----------------CHHHHHHHHHHHHHHHGGGCEEEEEECTTCSC---
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeeCC-----------------CHHHHHHHHHHHHHHcCCCCcEEEecCCCCcC---
Confidence 5678999999999999999999998754 2455678888999887 45677 76655553
Q ss_pred cHHHHHHHHHHHhhhCCc--cEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHH
Q 020423 210 SYNQLCDFIYKVSSLSPT--RHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR 287 (326)
Q Consensus 210 ~~~e~~~~ia~~le~~Gv--d~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~ 287 (326)
.++..+ +++.+++.|+ ++|. . ..++.+++.++++.+.. ++|| ...+.+++++.++++
T Consensus 200 -~~~A~~-~~~~l~~~~i~~~~iE----q------------P~~~~d~~~~~~l~~~~-~iPI--dE~~~~~~~~~~~~~ 258 (391)
T 3gd6_A 200 -WKDAHR-AIKRLTKYDLGLEMIE----S------------PAPRNDFDGLYQLRLKT-DYPI--SEHVWSFKQQQEMIK 258 (391)
T ss_dssp -HHHHHH-HHHHHTTCCSSCCEEE----C------------CSCTTCHHHHHHHHHHC-SSCE--EEECCCHHHHHHHHH
T ss_pred -HHHHHH-HHHHHHhcCCCcceec----C------------CCChhhHHHHHHHHHHc-CCCc--CCCCCCHHHHHHHHH
Confidence 445555 4567788999 8885 1 11233577778887765 8999 888999999999999
Q ss_pred hC-CChhhhhHHHHhCCc
Q 020423 288 KG-AHHVMVGRAAYQNPW 304 (326)
Q Consensus 288 ~G-aD~V~iGRall~dP~ 304 (326)
.| +|.|++--.-.....
T Consensus 259 ~~~~d~v~~k~~~~GGit 276 (391)
T 3gd6_A 259 KDAIDIFNISPVFIGGLT 276 (391)
T ss_dssp HTCCSEEEECHHHHTSHH
T ss_pred cCCCCEEEECchhcCCHH
Confidence 65 999998877665544
|
| >3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima} PDB: 2lle_A | Back alignment and structure |
|---|
Probab=97.74 E-value=0.00014 Score=62.98 Aligned_cols=80 Identities=11% Similarity=0.085 Sum_probs=59.3
Q ss_pred hhCCccEEEEecC--CcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHH
Q 020423 223 SLSPTRHFIIHSR--KALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAY 300 (326)
Q Consensus 223 e~~Gvd~I~v~~~--~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall 300 (326)
...|+..+.+++. ++...| ..++.+.++.+.. ++|||+.||+.+++++.++++.|+|+|++|++++
T Consensus 140 ~~~~~~~vli~~~~~~g~~~g-----------~~~~~i~~~~~~~-~~Pvia~~g~~~~~~~~~~~~~G~~~~~vg~a~~ 207 (237)
T 3cwo_X 140 EKRGAGEILLTSIDRDGTKSG-----------YDTEMIRFVRPLT-TLPIIASGGAGKMEHFLEAFLAGADAALAASVFH 207 (237)
T ss_dssp HHHTCSEEEEEETTTTTCCSC-----------CCHHHHHHHGGGC-CSCEEEESCCCSHHHHHHHHHHTCSEEEESHHHH
T ss_pred hhcCCCeEEEEecCCCCcccc-----------ccHHHHHHHHHhc-CCCEEecCCCCCHHHHHHHHHcCcHHHhhhHHHH
Confidence 4467776767663 221111 1267777776654 8999999999999999999999999999999999
Q ss_pred hCCchhHHhHHHhhh
Q 020423 301 QNPWYTLGHVDTAIY 315 (326)
Q Consensus 301 ~dP~l~~~~i~~~~~ 315 (326)
.+|+. ...+.+.+.
T Consensus 208 ~~~~~-~~~~~~~l~ 221 (237)
T 3cwo_X 208 FREID-VRELKEYLK 221 (237)
T ss_dssp TTSSC-HHHHHHHHH
T ss_pred cCCCC-HHHHHHHHH
Confidence 99985 445544444
|
| >3dg3_A Muconate cycloisomerase; muconate lactonizing enzyme, muconolactone binding; 1.60A {Mycobacterium smegmatis} PDB: 3dg6_A* 3dg7_A* | Back alignment and structure |
|---|
Probab=97.71 E-value=0.00056 Score=64.52 Aligned_cols=132 Identities=10% Similarity=0.087 Sum_probs=95.1
Q ss_pred EEEEecCCCHHHHHHHHHHHHHC-CCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC--CCcEEEEecc
Q 020423 127 IVLQIGGSNLDNLAKATELANAY-NYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRI 203 (326)
Q Consensus 127 iivQL~g~~~~~f~~aA~~a~~a-G~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~--~~pv~vK~r~ 203 (326)
+...+...+++++.+.++.+.+. ||..+-+..|... .+.-.+.+++||+.+ +.++.+....
T Consensus 131 ~~~~~~~~~~~~~~~~a~~~~~~~G~~~~K~K~g~~~----------------~~~d~~~v~avR~a~g~~~~l~vDan~ 194 (367)
T 3dg3_A 131 VSHMLGFDDPVKMVAEAERIRETYGINTFKVKVGRRP----------------VQLDTAVVRALRERFGDAIELYVDGNR 194 (367)
T ss_dssp EEEEEESSCHHHHHHHHHHHHHHHCCCEEEEECCCSS----------------THHHHHHHHHHHHHHGGGSEEEEECTT
T ss_pred EEEEecCCCHHHHHHHHHHHHHhcCccEEEEeeCCCh----------------hhhHHHHHHHHHHHhCCCCEEEEECCC
Confidence 44445556899999999988887 9999999875311 113356788888876 4667776655
Q ss_pred CCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHH
Q 020423 204 GVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVN 283 (326)
Q Consensus 204 g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~ 283 (326)
+|+ .++..+ +.+.+++.|+++|. . ..++.+++.+.++++.. ++||++.+.+.+++++.
T Consensus 195 ~~~----~~~a~~-~~~~l~~~~i~~iE----q------------P~~~~d~~~~~~l~~~~-~iPIa~dE~~~~~~~~~ 252 (367)
T 3dg3_A 195 GWS----AAESLR-AMREMADLDLLFAE----E------------LCPADDVLSRRRLVGQL-DMPFIADESVPTPADVT 252 (367)
T ss_dssp CSC----HHHHHH-HHHHTTTSCCSCEE----S------------CSCTTSHHHHHHHHHHC-SSCEEECTTCSSHHHHH
T ss_pred CCC----HHHHHH-HHHHHHHhCCCEEE----C------------CCCcccHHHHHHHHHhC-CCCEEecCCcCCHHHHH
Confidence 553 445444 45677889998885 1 11233467777777765 89999999999999999
Q ss_pred HHHHhC-CChhhhh
Q 020423 284 AALRKG-AHHVMVG 296 (326)
Q Consensus 284 ~~l~~G-aD~V~iG 296 (326)
++++.| +|.|++=
T Consensus 253 ~~i~~~~~d~v~~k 266 (367)
T 3dg3_A 253 REVLGGSATAISIK 266 (367)
T ss_dssp HHHHHTSCSEEEEC
T ss_pred HHHHcCCCCEEEee
Confidence 999966 8998874
|
| >2a4a_A Deoxyribose-phosphate aldolase; lyase, TIM beta/alpha barrel, DEOC, DERA, structur genomics, structural genomics consortium, SGC; 1.84A {Plasmodium yoelii yoelii} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=97.71 E-value=0.00014 Score=66.05 Aligned_cols=135 Identities=13% Similarity=0.122 Sum_probs=86.6
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHH---HHHHHHHHHHhcCCCcEEEEeccCCCCCccH
Q 020423 135 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPK---FVGEAMSVIAANTNVPVSVKCRIGVDDHDSY 211 (326)
Q Consensus 135 ~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~---~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~ 211 (326)
..+.-..-++.|.+.|+|.|++.+ + +|.-...+.+ .+.+-+.+|+++++ ...+|+-+....-.+
T Consensus 104 ~~~~Kv~E~~~Av~~GAdEIDmVi-----n------ig~lksg~~~~~~~v~~eI~~v~~a~~-~~~lKVIlEt~~L~d- 170 (281)
T 2a4a_A 104 SMEKVLNDTEKALDDGADEIDLVI-----N------YKKIIENTDEGLKEATKLTQSVKKLLT-NKILKVIIEVGELKT- 170 (281)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEC-----C------HHHHHHSHHHHHHHHHHHHHHHHTTCT-TSEEEEECCHHHHCS-
T ss_pred CHHHHHHHHHHHHHcCCCEEEEec-----c------hHhhhCCChhHHHHHHHHHHHHHHHhc-CCceEEEEecccCCc-
Confidence 445555667788888999999975 1 3433334566 88888889988885 345665552111111
Q ss_pred HHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhc--------CCCceEEEeCCCCCHHHHH
Q 020423 212 NQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRD--------FPDLTFTLNGGINTVDEVN 283 (326)
Q Consensus 212 ~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~--------~~~iPVIa~GgI~s~~da~ 283 (326)
++.+....++..++|+|+|-.+.+... +|. .+.+.+.+.+.+++ ..+++|-++|||+|.+++.
T Consensus 171 ~e~i~~A~~ia~eaGADfVKTSTGf~~-~gA--------T~edv~lm~~~v~~~~~~~~~tg~~vgVKaaGGIrt~e~al 241 (281)
T 2a4a_A 171 EDLIIKTTLAVLNGNADFIKTSTGKVQ-INA--------TPSSVEYIIKAIKEYIKNNPEKNNKIGLKVSGGISDLNTAS 241 (281)
T ss_dssp HHHHHHHHHHHHTTTCSEEECCCSCSS-CCC--------CHHHHHHHHHHHHHHHHHCGGGTTCCEEEEESSCCSHHHHH
T ss_pred HHHHHHHHHHHHHhCCCEEEeCCCCCC-CCC--------CHHHHHHHHHHHHHhhcccccCCCCceEEEeCCCCCHHHHH
Confidence 232333456667899999987754320 111 11234455555532 2479999999999999999
Q ss_pred HHHHhCCC
Q 020423 284 AALRKGAH 291 (326)
Q Consensus 284 ~~l~~GaD 291 (326)
++++.|++
T Consensus 242 ~~i~aga~ 249 (281)
T 2a4a_A 242 HYILLARR 249 (281)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhhh
Confidence 99997665
|
| >3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A* | Back alignment and structure |
|---|
Probab=97.70 E-value=0.00017 Score=63.82 Aligned_cols=144 Identities=10% Similarity=0.064 Sum_probs=93.1
Q ss_pred CCCcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEec
Q 020423 123 EQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCR 202 (326)
Q Consensus 123 ~~~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r 202 (326)
.+.|+-+-|+..+|+.|. +.+.++|+|+|-+|...+. .. +.++++.+|+ .|..+.+-+.
T Consensus 56 ~~~~~dvhLmv~dp~~~i---~~~~~aGAd~itvh~Ea~~--------------~~---~~~~i~~i~~-~G~k~gv~ln 114 (231)
T 3ctl_A 56 ATKPLDCHLMVTRPQDYI---AQLARAGADFITLHPETIN--------------GQ---AFRLIDEIRR-HDMKVGLILN 114 (231)
T ss_dssp CCSCEEEEEESSCGGGTH---HHHHHHTCSEEEECGGGCT--------------TT---HHHHHHHHHH-TTCEEEEEEC
T ss_pred cCCcEEEEEEecCHHHHH---HHHHHcCCCEEEECcccCC--------------cc---HHHHHHHHHH-cCCeEEEEEE
Confidence 367899999999998765 5567789999999953311 11 3456677755 3666666665
Q ss_pred cCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhc----CCCceEEEeCCCCC
Q 020423 203 IGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRD----FPDLTFTLNGGINT 278 (326)
Q Consensus 203 ~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~----~~~iPVIa~GgI~s 278 (326)
++... +. +..++ .++|++.+-+..+..+| . ...+..++.++++++. ..+++|.+-|||+
T Consensus 115 p~tp~-~~-------~~~~l--~~~D~VlvmsV~pGfgg---Q---~f~~~~l~kI~~lr~~~~~~~~~~~I~VdGGI~- 177 (231)
T 3ctl_A 115 PETPV-EA-------MKYYI--HKADKITVMTVDPGFAG---Q---PFIPEMLDKLAELKAWREREGLEYEIEVDGSCN- 177 (231)
T ss_dssp TTCCG-GG-------GTTTG--GGCSEEEEESSCTTCSS---C---CCCTTHHHHHHHHHHHHHHHTCCCEEEEESCCS-
T ss_pred CCCcH-HH-------HHHHH--hcCCEEEEeeeccCcCC---c---cccHHHHHHHHHHHHHHhccCCCceEEEECCcC-
Confidence 54221 11 12233 27999987554432222 1 1122335555444432 1368999999995
Q ss_pred HHHHHHHHHhCCChhhhh-HHHHhCCc
Q 020423 279 VDEVNAALRKGAHHVMVG-RAAYQNPW 304 (326)
Q Consensus 279 ~~da~~~l~~GaD~V~iG-Rall~dP~ 304 (326)
.+.+.++.+.|||.+.+| |+++..++
T Consensus 178 ~~~~~~~~~aGAd~~V~G~saif~~~d 204 (231)
T 3ctl_A 178 QATYEKLMAAGADVFIVGTSGLFNHAE 204 (231)
T ss_dssp TTTHHHHHHHTCCEEEECTTTTGGGCS
T ss_pred HHHHHHHHHcCCCEEEEccHHHhCCCC
Confidence 788999999999999999 99997544
|
| >1chr_A Chloromuconate cycloisomerase; 3.00A {Ralstonia eutropha} PDB: 2chr_A | Back alignment and structure |
|---|
Probab=97.68 E-value=0.00054 Score=64.71 Aligned_cols=123 Identities=9% Similarity=0.038 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC--CCcEEEEeccCCCCCccHHH
Q 020423 136 LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYNQ 213 (326)
Q Consensus 136 ~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~--~~pv~vK~r~g~~~~~~~~e 213 (326)
.+.+.++++.+.+.||..+.+..|.. +++.-.+.+++||+.+ +.++.+....+|+.. +
T Consensus 144 ~~~~~~~~~~~~~~G~~~~KiKvg~~----------------~~~~d~~~v~avR~~~g~~~~l~vDan~~~~~~----~ 203 (370)
T 1chr_A 144 KRDLDSAVEMIERRRHNRFKVKLGFR----------------SPQDDLIHMEALSNSLGSKAYLRVDVNQAWDEQ----V 203 (370)
T ss_dssp HHHHHHHHHHHHTTCCCEEEEECSSS----------------CSHHHHHHHHHHHHHSSTTCCEEEECTTCCCTT----H
T ss_pred HHHHHHHHHHHHHCCCCEEEEecCCC----------------CHHHHHHHHHHHHHhcCCCCEEEEECCCCCCHH----H
Confidence 44566666666668999999986532 2445567889999987 468888887777643 3
Q ss_pred HHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhC-CCh
Q 020423 214 LCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKG-AHH 292 (326)
Q Consensus 214 ~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~G-aD~ 292 (326)
..+ +.+.+++.|+++|. . ..++.+++.++++.++. ++||.+.+.+.+.+++.++++.| +|.
T Consensus 204 a~~-~~~~l~~~~i~~iE----q------------P~~~~~~~~~~~l~~~~-~iPia~dE~~~~~~~~~~~~~~~~~d~ 265 (370)
T 1chr_A 204 ASV-YIPELEALGVELIE----Q------------PVGRENTQALRRLSDNN-RVAIMADESLSTLASAFDLARDRSVDV 265 (370)
T ss_dssp HHH-HTHHHHTTTEEEEE----C------------CSCTTCHHHHHHHHHHS-CSEEEESSSCCSHHHHHHHHTTTSCSE
T ss_pred HHH-HHHHHHhcCCCEEE----C------------CCCcccHHHHHHHHhhC-CCCEEeCCCcCCHHHHHHHHHcCCCCE
Confidence 333 34567788998885 1 11233577777877765 89999999999999999999855 888
Q ss_pred hhhh
Q 020423 293 VMVG 296 (326)
Q Consensus 293 V~iG 296 (326)
|++-
T Consensus 266 v~~k 269 (370)
T 1chr_A 266 FSLK 269 (370)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 8763
|
| >2czd_A Orotidine 5'-phosphate decarboxylase; pyrimidine biosynthesis, orotidine 5'-phosphate decarboxylas (ompdecase), structural genomics; 1.60A {Pyrococcus horikoshii} SCOP: c.1.2.3 PDB: 2cz5_A 2cze_A* 2czf_A* | Back alignment and structure |
|---|
Probab=97.67 E-value=0.00046 Score=59.82 Aligned_cols=140 Identities=15% Similarity=0.129 Sum_probs=81.8
Q ss_pred CCcEEEEecCC-CHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEec
Q 020423 124 QHPIVLQIGGS-NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCR 202 (326)
Q Consensus 124 ~~piivQL~g~-~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r 202 (326)
+.++++-+.-. -++.-.+.++.+.++|+|.|.+|... | . +.++.+++.. -+.+...
T Consensus 51 ~~~v~~D~kl~DI~~t~~~~v~~~~~~Gad~vtvh~~~-----------g------~----~~i~~~~~~~--gv~vl~~ 107 (208)
T 2czd_A 51 GVEIIADLKLADIPNTNRLIARKVFGAGADYVIVHTFV-----------G------R----DSVMAVKELG--EIIMVVE 107 (208)
T ss_dssp CCEEEEEEEECSCHHHHHHHHHHHHHTTCSEEEEESTT-----------C------H----HHHHHHHTTS--EEEEECC
T ss_pred CCEEEEEeeeCchHHHHHHHHHHHHhcCCCEEEEeccC-----------C------H----HHHHHHHHhC--CcEEEEe
Confidence 44555554322 23444556667778999999999521 1 1 1255555544 3333333
Q ss_pred cCCCCCccH-HHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCC-HH
Q 020423 203 IGVDDHDSY-NQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT-VD 280 (326)
Q Consensus 203 ~g~~~~~~~-~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s-~~ 280 (326)
...++..+. .+..+.+++...+.|.+.+.+.... .+.+.++++....-+++..|||+. ..
T Consensus 108 t~~~~~~~~~~~~v~~~~~~a~~~G~~G~~~~~~~------------------~~~i~~lr~~~~~~~~iv~gGI~~~g~ 169 (208)
T 2czd_A 108 MSHPGALEFINPLTDRFIEVANEIEPFGVIAPGTR------------------PERIGYIRDRLKEGIKILAPGIGAQGG 169 (208)
T ss_dssp CCSGGGGTTTGGGHHHHHHHHHHHCCSEEECCCSS------------------THHHHHHHHHSCTTCEEEECCCCSSTT
T ss_pred cCCcchhhHHHHHHHHHHHHHHHhCCcEEEECCCC------------------hHHHHHHHHhCCCCeEEEECCCCCCCC
Confidence 222111111 2233445555567899888654311 233444554443345779999986 33
Q ss_pred HHHHHHHhCCChhhhhHHHHhCCc
Q 020423 281 EVNAALRKGAHHVMVGRAAYQNPW 304 (326)
Q Consensus 281 da~~~l~~GaD~V~iGRall~dP~ 304 (326)
++.++++.|||.+.+||+++..++
T Consensus 170 ~~~~~~~aGad~vvvGr~I~~a~d 193 (208)
T 2czd_A 170 KAKDAVKAGADYIIVGRAIYNAPN 193 (208)
T ss_dssp HHHHHHHHTCSEEEECHHHHTSSS
T ss_pred CHHHHHHcCCCEEEEChHHhcCCC
Confidence 788999999999999999998655
|
| >1i4n_A Indole-3-glycerol phosphate synthase; thermostable TIM-barrel protein, salt bridges, electrostatic interactions, lyase; 2.50A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1j5t_A | Back alignment and structure |
|---|
Probab=97.64 E-value=0.00069 Score=60.56 Aligned_cols=146 Identities=18% Similarity=0.173 Sum_probs=99.1
Q ss_pred CCCcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEec
Q 020423 123 EQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCR 202 (326)
Q Consensus 123 ~~~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r 202 (326)
.+-|+.-+=+..++-+ .. .++.+|+|+|=|+... -..+.+.++++..++ .|..+.|-+.
T Consensus 100 v~lPvLrKDfi~~~~q---i~-ea~~~GAD~ilLi~a~----------------l~~~~l~~l~~~a~~-lGl~~lvEv~ 158 (251)
T 1i4n_A 100 TCRPILAKDFYIDTVQ---VK-LASSVGADAILIIARI----------------LTAEQIKEIYEAAEE-LGMDSLVEVH 158 (251)
T ss_dssp CCSCEEEECCCCSTHH---HH-HHHHTTCSEEEEEGGG----------------SCHHHHHHHHHHHHT-TTCEEEEEEC
T ss_pred CCCCEEEeeCCCCHHH---HH-HHHHcCCCEEEEeccc----------------CCHHHHHHHHHHHHH-cCCeEEEEeC
Confidence 4678887765544332 22 3788999999998641 113457777777655 4777666432
Q ss_pred cCCCCCccHHHHHHHHHHHhhhC-CccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCC-CceEEEeCCCCCHH
Q 020423 203 IGVDDHDSYNQLCDFIYKVSSLS-PTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFP-DLTFTLNGGINTVD 280 (326)
Q Consensus 203 ~g~~~~~~~~e~~~~ia~~le~~-Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~-~iPVIa~GgI~s~~ 280 (326)
+.+|+. +. .+. |+|.|-++.|+- .+. ..+++...++.+..+ ++++|+-|||.|++
T Consensus 159 -------~~eE~~----~A-~~l~g~~iIGinnr~l--~t~---------~~d~~~~~~l~~~ip~~~~vIaEsGI~t~e 215 (251)
T 1i4n_A 159 -------SREDLE----KV-FSVIRPKIIGINTRDL--DTF---------EIKKNVLWELLPLVPDDTVVVAESGIKDPR 215 (251)
T ss_dssp -------SHHHHH----HH-HTTCCCSEEEEECBCT--TTC---------CBCTTHHHHHGGGSCTTSEEEEESCCCCGG
T ss_pred -------CHHHHH----HH-HhcCCCCEEEEeCccc--ccC---------CCCHHHHHHHHHhCCCCCEEEEeCCCCCHH
Confidence 344432 22 357 999999998752 111 122444555666554 58999999999999
Q ss_pred HHHHHHHhCCChhhhhHHHHhCCchhHHhHHHhh
Q 020423 281 EVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAI 314 (326)
Q Consensus 281 da~~~l~~GaD~V~iGRall~dP~l~~~~i~~~~ 314 (326)
|+.++.+. +|+|.||.+++..++ ....+++.+
T Consensus 216 dv~~~~~~-a~avLVG~aimr~~d-~~~~~~~l~ 247 (251)
T 1i4n_A 216 ELKDLRGK-VNAVLVGTSIMKAEN-PRRFLEEMR 247 (251)
T ss_dssp GHHHHTTT-CSEEEECHHHHHCSS-HHHHHHHHH
T ss_pred HHHHHHHh-CCEEEEcHHHcCCcC-HHHHHHHHH
Confidence 99999999 999999999999887 455555544
|
| >3i6e_A Muconate cycloisomerase I; structural genomics, NYSGXRC, targer 9468A, muconate lactonizing enzyme, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi} PDB: 3i6t_A | Back alignment and structure |
|---|
Probab=97.61 E-value=0.0013 Score=62.36 Aligned_cols=137 Identities=15% Similarity=0.138 Sum_probs=97.1
Q ss_pred cEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC-CCcEEEEeccC
Q 020423 126 PIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCRIG 204 (326)
Q Consensus 126 piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~-~~pv~vK~r~g 204 (326)
|+-..+...++++..+.++.+.+.||..+-+..|.. .++.-.+.+++||+.+ +.++.+....+
T Consensus 139 ~~~~t~~~~~~~~~~~~a~~~~~~G~~~~K~Kvg~~----------------~~~~d~~~v~avR~a~~~~~l~vDan~~ 202 (385)
T 3i6e_A 139 PLSCSIANPDFDADIALMERLRADGVGLIKLKTGFR----------------DHAFDIMRLELIARDFPEFRVRVDYNQG 202 (385)
T ss_dssp EBEEEECCSSHHHHHHHHHHHHHHTCCEEEEECSSS----------------CHHHHHHHHHHHHHHCTTSEEEEECTTC
T ss_pred EEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEecCCC----------------CHHHHHHHHHHHHHhCCCCeEEEECCCC
Confidence 344445556788888888877778999999986521 2445567788888886 56788887777
Q ss_pred CCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHH
Q 020423 205 VDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNA 284 (326)
Q Consensus 205 ~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~ 284 (326)
|+.. +..+ +.+.+++.|+++|. . ..++.+++.++++.++. ++||.+...+.+.+++.+
T Consensus 203 ~~~~----~A~~-~~~~L~~~~i~~iE----q------------P~~~~d~~~~~~l~~~~-~iPIa~dE~~~~~~~~~~ 260 (385)
T 3i6e_A 203 LEID----EAVP-RVLDVAQFQPDFIE----Q------------PVRAHHFELMARLRGLT-DVPLLADESVYGPEDMVR 260 (385)
T ss_dssp CCGG----GHHH-HHHHHHTTCCSCEE----C------------CSCTTCHHHHHHHHTTC-SSCEEESTTCCSHHHHHH
T ss_pred CCHH----HHHH-HHHHHHhcCCCEEE----C------------CCCcccHHHHHHHHHhC-CCCEEEeCCcCCHHHHHH
Confidence 7542 2233 34566788998884 1 11234577777877664 899999999999999999
Q ss_pred HHHhC-CChhhhhHHHH
Q 020423 285 ALRKG-AHHVMVGRAAY 300 (326)
Q Consensus 285 ~l~~G-aD~V~iGRall 300 (326)
+++.| +|.|++--.-.
T Consensus 261 ~~~~~~~d~v~~k~~~~ 277 (385)
T 3i6e_A 261 AAHEGICDGVSIKIMKS 277 (385)
T ss_dssp HHHHTCCSEEEECHHHH
T ss_pred HHHcCCCCEEEeccccc
Confidence 99855 89888654443
|
| >2h6r_A Triosephosphate isomerase; beta-alpha barrel; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=97.58 E-value=0.0014 Score=57.35 Aligned_cols=140 Identities=13% Similarity=0.081 Sum_probs=82.2
Q ss_pred HHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHHHHh
Q 020423 143 TELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVS 222 (326)
Q Consensus 143 A~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia~~l 222 (326)
+..++++|+|+|-|... .|.-. .+.+.+.++..++. |..+.+-+... . +. +.+
T Consensus 75 ~~~~~~~Gad~Vll~~s------er~l~--------~~e~~~~~~~a~~~-Gl~~iv~v~~~------~-e~-----~~~ 127 (219)
T 2h6r_A 75 AEAIKDCGCKGTLINHS------EKRML--------LADIEAVINKCKNL-GLETIVCTNNI------N-TS-----KAV 127 (219)
T ss_dssp HHHHHHHTCCEEEESBT------TBCCB--------HHHHHHHHHHHHHH-TCEEEEEESSS------H-HH-----HHH
T ss_pred HHHHHHcCCCEEEECCc------cccCC--------HHHHHHHHHHHHHC-CCeEEEEeCCc------h-HH-----HHH
Confidence 36678899999999321 11111 22256666665443 66655544321 1 11 123
Q ss_pred hhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCC-CceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHh
Q 020423 223 SLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFP-DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 301 (326)
Q Consensus 223 e~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~-~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~ 301 (326)
.+.|.++|-+..++..-.|..-. ...+...+...+..++.+ ++||++.|||.+++++..+.+.|+|+|.+|++++.
T Consensus 128 ~~~~~~~i~~~~~~~iGtG~~~~---t~~~~~~~~~~~~ir~~~~~~~ii~ggGI~~~~~~~~~~~~gaDgvlVGsAi~~ 204 (219)
T 2h6r_A 128 AALSPDCIAVEPPELIGTGIPVS---KANPEVVEGTVRAVKEINKDVKVLCGAGISKGEDVKAALDLGAEGVLLASGVVK 204 (219)
T ss_dssp TTTCCSEEEECCCC-----------------CSHHHHHHHHHHCTTCEEEECSSCCSHHHHHHHHTTTCCCEEESHHHHT
T ss_pred HhCCCCEEEEEeccccccCCCCc---cCCHHHHHHHHHHHHhccCCCeEEEEeCcCcHHHHHHHhhCCCCEEEEcHHHhC
Confidence 45688888888765310120000 001111223333344433 79999999999999999999999999999999998
Q ss_pred CCchhHHhHHHh
Q 020423 302 NPWYTLGHVDTA 313 (326)
Q Consensus 302 dP~l~~~~i~~~ 313 (326)
-++ +...+++.
T Consensus 205 ~~d-~~~~~~~l 215 (219)
T 2h6r_A 205 AKN-VEEAIREL 215 (219)
T ss_dssp CSS-HHHHHHHH
T ss_pred ccc-HHHHHHHH
Confidence 887 56665553
|
| >1vcv_A Probable deoxyribose-phosphate aldolase; DERA, hyperthermophIle, archaea, lyase; 2.00A {Pyrobaculum aerophilum} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=97.58 E-value=0.0015 Score=57.34 Aligned_cols=138 Identities=14% Similarity=0.054 Sum_probs=85.6
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHH
Q 020423 135 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQL 214 (326)
Q Consensus 135 ~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~ 214 (326)
..+.-...++. .+.|+|.|++.+ + +|.-...+.+.+.+-+.++++.++- ..+|+-+.... .+.++.
T Consensus 65 ~~~~k~~E~~~-i~~GAdEID~Vi-----n------ig~~~~g~~~~v~~ei~~v~~a~~~-~~lKvIlEt~~-Lt~eei 130 (226)
T 1vcv_A 65 PTASRIALVSR-LAEVADEIDVVA-----P------IGLVKSRRWAEVRRDLISVVGAAGG-RVVKVITEEPY-LRDEER 130 (226)
T ss_dssp CHHHHHHHHHH-HTTTCSEEEEEC-----C------HHHHHTTCHHHHHHHHHHHHHHTTT-SEEEEECCGGG-CCHHHH
T ss_pred chHHHHHHHHH-HHCCCCEEEEec-----c------hhhhcCCCHHHHHHHHHHHHHHHcC-CCceEEEeccC-CCHHHH
Confidence 34444455566 888999999975 2 3443446778888889999888743 25664332111 123333
Q ss_pred HHHHHHHhhhCCccEEEEecCCcc-----cCCCCcCCcCCCCCccHHHHHHHHhcC-CCceEEEeCCCCCHHHHHHHHHh
Q 020423 215 CDFIYKVSSLSPTRHFIIHSRKAL-----LNGISPAENRTIPPLKYEYYYALLRDF-PDLTFTLNGGINTVDEVNAALRK 288 (326)
Q Consensus 215 ~~~ia~~le~~Gvd~I~v~~~~~~-----~~g~~~~~~~~~~~~~~~~i~~i~~~~-~~iPVIa~GgI~s~~da~~~l~~ 288 (326)
....++..++|+|+|-.+.+... ..|..+ ...+.+.+.+.+.++.. .+++|-++|||++.+++.++++.
T Consensus 131 -~~a~~ia~eaGADfVKTSTGf~~~~~~~~~~~~~----gAt~~dv~lm~~~i~~~g~~v~vKaaGGirt~~~al~~i~a 205 (226)
T 1vcv_A 131 -YTLYDIIAEAGAHFIKSSTGFAEEAYAARQGNPV----HSTPERAAAIARYIKEKGYRLGVKMAGGIRTREQAKAIVDA 205 (226)
T ss_dssp -HHHHHHHHHHTCSEEECCCSCCCHHHHHHTTCCS----SCCHHHHHHHHHHHHHHTCCCEEEEESSCCSHHHHHHHHHH
T ss_pred -HHHHHHHHHcCCCEEEeCCCCCccccccccCCCC----CCCHHHHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHH
Confidence 33556667899999988755320 000000 00111234455553333 36999999999999999999998
Q ss_pred ---CCC
Q 020423 289 ---GAH 291 (326)
Q Consensus 289 ---GaD 291 (326)
||+
T Consensus 206 ~~~Ga~ 211 (226)
T 1vcv_A 206 IGWGED 211 (226)
T ss_dssp HCSCSC
T ss_pred HHCCCC
Confidence 987
|
| >3fv9_G Mandelate racemase/muconate lactonizing enzyme; structural genomics, mandelate racemase/muconatelactonizing hydrolase, PSI-2; 1.90A {Roseovarius nubinhibens ism} PDB: 2pce_A | Back alignment and structure |
|---|
Probab=97.57 E-value=0.0027 Score=60.32 Aligned_cols=140 Identities=14% Similarity=0.143 Sum_probs=101.4
Q ss_pred CCcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC--CCcEEEEe
Q 020423 124 QHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKC 201 (326)
Q Consensus 124 ~~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~--~~pv~vK~ 201 (326)
.-|+-..+...+++++.+.++.+.+.||..+-++.|++.. . .+++.-.+.+++||+++ +.++.+..
T Consensus 134 ~v~~y~s~~~~~~e~~~~~a~~~~~~G~~~~K~Kvg~~~~--------~----~~~~~d~~~v~avR~a~G~~~~L~vDa 201 (386)
T 3fv9_G 134 PVPVISSIGGDTPEAMRAKVARHRAQGFKGHSIKIGASEA--------E----GGPALDAERITACLADRQPGEWYLADA 201 (386)
T ss_dssp CBCEEEEECSCCHHHHHHHHHHHHHTTCCEEEEECCCCTT--------T----THHHHHHHHHHHHTTTCCTTCEEEEEC
T ss_pred ceeeeEecCCCCHHHHHHHHHHHHHCCCCEEEEeccCCCC--------C----CCHHHHHHHHHHHHHHcCCCCeEEEEC
Confidence 4466667777889999999999999999999999987631 0 23566778899999987 45677766
Q ss_pred ccCCCCCccHHHHHHHHHHHh-hhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHH
Q 020423 202 RIGVDDHDSYNQLCDFIYKVS-SLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVD 280 (326)
Q Consensus 202 r~g~~~~~~~~e~~~~ia~~l-e~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~ 280 (326)
..+|+ .++..+ +.+.+ +..++ +|. . + .+ +++.++++.+.. ++||.+...+.+.+
T Consensus 202 N~~~~----~~~A~~-~~~~l~~~~~i-~iE----e-----------P-~~--~~~~~~~l~~~~-~iPIa~dE~~~~~~ 256 (386)
T 3fv9_G 202 NNGLT----VEHALR-MLSLLPPGLDI-VLE----A-----------P-CA--SWAETKSLRARC-ALPLLLDELIQTET 256 (386)
T ss_dssp TTCCC----HHHHHH-HHHHSCSSCCC-EEE----C-----------C-CS--SHHHHHHHHTTC-CSCEEESTTCCSHH
T ss_pred CCCCC----HHHHHH-HHHHhhccCCc-EEe----c-----------C-CC--CHHHHHHHHhhC-CCCEEeCCCcCCHH
Confidence 66554 344444 34455 55666 653 1 0 11 477777777664 89999999999999
Q ss_pred HHHHHHHhC-CChhhhhHHHH
Q 020423 281 EVNAALRKG-AHHVMVGRAAY 300 (326)
Q Consensus 281 da~~~l~~G-aD~V~iGRall 300 (326)
++.++++.| +|.|++=-...
T Consensus 257 ~~~~~~~~~a~d~v~~k~~~~ 277 (386)
T 3fv9_G 257 DLIAAIRDDLCDGVGLKVSKQ 277 (386)
T ss_dssp HHHHHHHTTCCSEEEEEHHHH
T ss_pred HHHHHHHhCCCCEEEECcccc
Confidence 999999965 99988754443
|
| >3r0u_A Enzyme of enolase superfamily; structural genomics, putative epimerase, PSI-biolog YORK structural genomics research consortium; HET: MSE TAR; 1.90A {Francisella philomiragia subsp} PDB: 3px5_A* 3r0k_A* 3r10_A 3r11_A 3r1z_A* | Back alignment and structure |
|---|
Probab=97.56 E-value=0.0025 Score=60.40 Aligned_cols=134 Identities=7% Similarity=0.067 Sum_probs=97.8
Q ss_pred EEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCC--CcEEEEeccCC
Q 020423 128 VLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTN--VPVSVKCRIGV 205 (326)
Q Consensus 128 ivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~--~pv~vK~r~g~ 205 (326)
-..+...+++++.+.++.+.+.||..+-++.|. +++.-.+.+++||+.++ .++.+....+|
T Consensus 135 y~t~g~~~~e~~~~~a~~~~~~Gf~~~KlK~g~-----------------~~~~d~~~v~avR~a~g~~~~L~vDaN~~w 197 (379)
T 3r0u_A 135 DVSISCGNVAETIQNIQNGVEANFTAIKVKTGA-----------------DFNRDIQLLKALDNEFSKNIKFRFDANQGW 197 (379)
T ss_dssp CEEECCCCHHHHHHHHHHHHHTTCCEEEEECSS-----------------CHHHHHHHHHHHHHHCCTTSEEEEECTTCC
T ss_pred EEEecCCCHHHHHHHHHHHHHcCCCEEeeecCC-----------------CHHHHHHHHHHHHHhcCCCCeEEEeCCCCc
Confidence 344555688999999999889999999997642 25566788899999884 56777665555
Q ss_pred CCCccHHHHHHHHHHHhhh--CCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHH
Q 020423 206 DDHDSYNQLCDFIYKVSSL--SPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVN 283 (326)
Q Consensus 206 ~~~~~~~e~~~~ia~~le~--~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~ 283 (326)
+ .++..+ +.+.+++ .++++|. . ..++.+++.++++.+.. .+||.+...+.+.+++.
T Consensus 198 ~----~~~A~~-~~~~l~~~~~~l~~iE----e------------P~~~~d~~~~~~l~~~~-~iPIa~dE~~~~~~~~~ 255 (379)
T 3r0u_A 198 N----LAQTKQ-FIEEINKYSLNVEIIE----Q------------PVKYYDIKAMAEITKFS-NIPVVADESVFDAKDAE 255 (379)
T ss_dssp C----HHHHHH-HHHHHHTSCCCEEEEE----C------------CSCTTCHHHHHHHHHHC-SSCEEESTTCSSHHHHH
T ss_pred C----HHHHHH-HHHHHhhcCCCcEEEE----C------------CCCcccHHHHHHHHhcC-CCCEEeCCccCCHHHHH
Confidence 4 444444 4556777 6788874 1 11233577777887765 89999999999999999
Q ss_pred HHHHhC-CChhhhhHHHH
Q 020423 284 AALRKG-AHHVMVGRAAY 300 (326)
Q Consensus 284 ~~l~~G-aD~V~iGRall 300 (326)
++++.| +|.|++--...
T Consensus 256 ~~i~~~a~d~v~~k~~~~ 273 (379)
T 3r0u_A 256 RVIDEQACNMINIKLAKT 273 (379)
T ss_dssp HHHHTTCCSEEEECHHHH
T ss_pred HHHHcCCCCEEEECcccc
Confidence 999966 89888754443
|
| >1p1x_A Deoxyribose-phosphate aldolase; alpha-beta barrel, TIM barrel, lyase; 0.99A {Escherichia coli} SCOP: c.1.10.1 PDB: 1jcl_A 1jcj_A* 1ktn_A 3npv_B 3npu_A 3npw_A 3nq2_A 3npx_A 3nq8_A 3q2d_A* 3nr0_A 3nqv_A | Back alignment and structure |
|---|
Probab=97.56 E-value=0.00026 Score=63.57 Aligned_cols=136 Identities=15% Similarity=0.158 Sum_probs=85.3
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCC-CcEEEEeccCCCCCccHHH
Q 020423 135 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTN-VPVSVKCRIGVDDHDSYNQ 213 (326)
Q Consensus 135 ~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~-~pv~vK~r~g~~~~~~~~e 213 (326)
..+.-..-++.+.+.|+|.|++.+. ||.-...+.+.+.+-+.+|++.++ .+..+|+-+....- +-++
T Consensus 83 ~~~~Kv~E~~~Av~~GAdEIDmVin-----------ig~l~~g~~~~v~~ei~~v~~a~~~~g~~lKvIlEt~~L-~d~e 150 (260)
T 1p1x_A 83 DIDIALAETRAAIAYGADEVDVVFP-----------YRALMAGNEQVGFDLVKACKEACAAANVLLKVIIETGEL-KDEA 150 (260)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEECC-----------HHHHHTTCCHHHHHHHHHHHHHHHHTTCEEEEECCHHHH-CSHH
T ss_pred cHHHHHHHHHHHHHcCCCEEEEecc-----------HHhhhCCCHHHHHHHHHHHHHHhcccCCeEEEEEecccC-CcHH
Confidence 4455556677888899999999752 343334566778888888888763 23456655421111 1123
Q ss_pred HHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhc---CCCceEEEeCCCCCHHHHHHHHHhCC
Q 020423 214 LCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRD---FPDLTFTLNGGINTVDEVNAALRKGA 290 (326)
Q Consensus 214 ~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~---~~~iPVIa~GgI~s~~da~~~l~~Ga 290 (326)
.+....++..++|+|+|-.+.+... +|. .+.+...+.+.+++ ..+++|-++|||++.+++.++++.|+
T Consensus 151 ~i~~a~~ia~eaGADfVKTSTGf~~-~gA--------t~e~v~lm~~~I~~~~~g~~v~VKaaGGIrt~~~al~~i~aga 221 (260)
T 1p1x_A 151 LIRKASEISIKAGADFIKTSTGKVA-VNA--------TPESARIMMEVIRDMGVEKTVGFKPAGGVRTAEDAQKYLAIAD 221 (260)
T ss_dssp HHHHHHHHHHHTTCSEEECCCSCSS-CCC--------CHHHHHHHHHHHHHHTCTTTCEEECBSSCCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCEEEeCCCCCC-CCC--------CHHHHHHHHHHHHHhcCCCCceEEEeCCCCCHHHHHHHHHhhh
Confidence 2333456667899999987754320 110 11123345555442 24799999999999999999999765
Q ss_pred C
Q 020423 291 H 291 (326)
Q Consensus 291 D 291 (326)
+
T Consensus 222 ~ 222 (260)
T 1p1x_A 222 E 222 (260)
T ss_dssp H
T ss_pred h
Confidence 5
|
| >3tcs_A Racemase, putative; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, TIM barrel; HET: PG4; 1.88A {Roseobacter denitrificans} PDB: 3u4f_A 3t9p_A 3t8q_A | Back alignment and structure |
|---|
Probab=97.54 E-value=0.0018 Score=61.62 Aligned_cols=136 Identities=8% Similarity=0.017 Sum_probs=94.2
Q ss_pred CHHHHHHHHHH-HHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC--CCcEEEEeccCCCCCccH
Q 020423 135 NLDNLAKATEL-ANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSY 211 (326)
Q Consensus 135 ~~~~f~~aA~~-a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~--~~pv~vK~r~g~~~~~~~ 211 (326)
++++.++.+.. ..+.||..+-++.|.+... | ....++...+.+++||+++ +.++.+....+|+ .
T Consensus 146 ~~~~~~~~~~~~~~~~Gf~~~K~KvG~~~~~----d-----~~~~~~~~~~~v~avReavG~d~~l~vDaN~~~~----~ 212 (388)
T 3tcs_A 146 TPRDEAERLKRLRDTQGFTAFKVRAGAEVGR----N-----RDEWPGRTEEIIPTMRRELGDDVDLLIDANSCYT----P 212 (388)
T ss_dssp CHHHHHHHHHHHHHHHCCCEEEEECSCTTCT----T-----CCSSTTHHHHHHHHHHHHHCSSSEEEEECTTCCC----H
T ss_pred ChHHHHHHHHHHHHhcCCCEEEEccCCCccc----c-----cccchhHHHHHHHHHHHHhCCCCeEEEeCCCCcC----H
Confidence 56665555444 4578999999998865321 1 1123556678899999987 4677777666664 3
Q ss_pred HHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhC-C
Q 020423 212 NQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKG-A 290 (326)
Q Consensus 212 ~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~G-a 290 (326)
++..+ +++.+++.|+++|. . ..++.+++.++++.+.. .+||.+...+.+.+++.++++.| +
T Consensus 213 ~~A~~-~~~~l~~~~i~~iE----e------------P~~~~d~~~~~~l~~~~-~iPIa~dE~~~~~~~~~~~i~~~a~ 274 (388)
T 3tcs_A 213 DRAIE-VGHMLQDHGFCHFE----E------------PCPYWELAQTKQVTDAL-DIDVTGGEQDCDLPTWQRMIDMRAV 274 (388)
T ss_dssp HHHHH-HHHHHHHTTCCEEE----C------------CSCTTCHHHHHHHHHHC-SSCEEECTTCCCHHHHHHHHHHTCC
T ss_pred HHHHH-HHHHHhhcCCeEEE----C------------CCCccCHHHHHHHHHhc-CCCEEcCCccCCHHHHHHHHHcCCC
Confidence 44445 35567889998884 1 12233577777887765 89999999999999999999865 9
Q ss_pred ChhhhhHHHHh
Q 020423 291 HHVMVGRAAYQ 301 (326)
Q Consensus 291 D~V~iGRall~ 301 (326)
|.|++--.-..
T Consensus 275 d~v~~d~~~~G 285 (388)
T 3tcs_A 275 DIVQPDILYLG 285 (388)
T ss_dssp SEECCCHHHHT
T ss_pred CEEEeCccccC
Confidence 99887654443
|
| >4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3} | Back alignment and structure |
|---|
Probab=97.52 E-value=0.0011 Score=58.63 Aligned_cols=146 Identities=11% Similarity=0.080 Sum_probs=85.3
Q ss_pred CcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCc-----------ccCCCCccccccCCHHHHHHHHHHHHhcC
Q 020423 125 HPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPK-----------VAGHGCFGVSLMLDPKFVGEAMSVIAANT 193 (326)
Q Consensus 125 ~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~-----------~~r~d~yGgsl~~r~~~l~eiv~avr~~~ 193 (326)
.+++.=+.+.++++..+.++.+.+.|++.||+.+..|... ..-.+ .| ... ..+.+...+++
T Consensus 34 ~~vv~Vir~~~~~~a~~~a~al~~gGi~~iEvt~~t~~a~e~I~~l~~~~~~~~iG-aG-TVl-t~~~a~~Ai~A----- 105 (232)
T 4e38_A 34 LKVIPVIAIDNAEDIIPLGKVLAENGLPAAEITFRSDAAVEAIRLLRQAQPEMLIG-AG-TIL-NGEQALAAKEA----- 105 (232)
T ss_dssp HCEEEEECCSSGGGHHHHHHHHHHTTCCEEEEETTSTTHHHHHHHHHHHCTTCEEE-EE-CCC-SHHHHHHHHHH-----
T ss_pred CCEEEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCCCCHHHHHHHHHHhCCCCEEe-EC-CcC-CHHHHHHHHHc-----
Confidence 4677777788999999999999999999999976544310 00000 11 111 12222222221
Q ss_pred CCcEEEEeccCCCC----------------CccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHH
Q 020423 194 NVPVSVKCRIGVDD----------------HDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEY 257 (326)
Q Consensus 194 ~~pv~vK~r~g~~~----------------~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~ 257 (326)
|-.+.+ +++.+. ..+..|+. +. .++|+|++-+..... ....++
T Consensus 106 GA~fIv--sP~~~~~vi~~~~~~gi~~ipGv~TptEi~----~A-~~~Gad~vK~FPa~~--------------~gG~~~ 164 (232)
T 4e38_A 106 GATFVV--SPGFNPNTVRACQEIGIDIVPGVNNPSTVE----AA-LEMGLTTLKFFPAEA--------------SGGISM 164 (232)
T ss_dssp TCSEEE--CSSCCHHHHHHHHHHTCEEECEECSHHHHH----HH-HHTTCCEEEECSTTT--------------TTHHHH
T ss_pred CCCEEE--eCCCCHHHHHHHHHcCCCEEcCCCCHHHHH----HH-HHcCCCEEEECcCcc--------------ccCHHH
Confidence 111211 111100 00122221 11 235666665532110 013578
Q ss_pred HHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHH
Q 020423 258 YYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAY 300 (326)
Q Consensus 258 i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall 300 (326)
+++++..++++|++..||| +++.+.++++.|+.++.+|+.+.
T Consensus 165 lkal~~p~p~ip~~ptGGI-~~~n~~~~l~aGa~~~vgGs~l~ 206 (232)
T 4e38_A 165 VKSLVGPYGDIRLMPTGGI-TPSNIDNYLAIPQVLACGGTWMV 206 (232)
T ss_dssp HHHHHTTCTTCEEEEBSSC-CTTTHHHHHTSTTBCCEEECGGG
T ss_pred HHHHHHHhcCCCeeeEcCC-CHHHHHHHHHCCCeEEEECchhc
Confidence 8888877779999999999 58999999999999988887664
|
| >2qr6_A IMP dehydrogenase/GMP reductase; NP_599840.1, G reductase domain, structural genomics, joint center for STR genomics, JCSG; HET: MSE; 1.50A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=97.50 E-value=0.00033 Score=66.73 Aligned_cols=101 Identities=14% Similarity=0.199 Sum_probs=70.3
Q ss_pred CHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHH
Q 020423 178 DPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEY 257 (326)
Q Consensus 178 r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~ 257 (326)
+++++.++++.+++. +.++.++++.. ...+. ++.++++|+|.+.+|+.... ..... +...|..
T Consensus 140 d~~~~~~~i~~~~~~-g~~v~~~v~~~-----~~~e~----a~~~~~agad~i~i~~~~~~-~~~~~------~~~~~~~ 202 (393)
T 2qr6_A 140 DTELLSERIAQVRDS-GEIVAVRVSPQ-----NVREI----APIVIKAGADLLVIQGTLIS-AEHVN------TGGEALN 202 (393)
T ss_dssp CHHHHHHHHHHHHHT-TSCCEEEECTT-----THHHH----HHHHHHTTCSEEEEECSSCC-SSCCC------C-----C
T ss_pred CHHHHHHHHHHHhhc-CCeEEEEeCCc-----cHHHH----HHHHHHCCCCEEEEeCCccc-cccCC------CcccHHH
Confidence 678888899988776 88999987652 12222 23445689999999865311 11111 1123555
Q ss_pred HHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhH
Q 020423 258 YYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGR 297 (326)
Q Consensus 258 i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGR 297 (326)
+.++++.. ++||++ ||+.+++++..+++.|||+|.+|+
T Consensus 203 i~~l~~~~-~~pvi~-ggi~t~e~a~~~~~~Gad~i~vg~ 240 (393)
T 2qr6_A 203 LKEFIGSL-DVPVIA-GGVNDYTTALHMMRTGAVGIIVGG 240 (393)
T ss_dssp HHHHHHHC-SSCEEE-ECCCSHHHHHHHHTTTCSEEEESC
T ss_pred HHHHHHhc-CCCEEE-CCcCCHHHHHHHHHcCCCEEEECC
Confidence 67777765 899998 899999999999999999999976
|
| >3mwc_A Mandelate racemase/muconate lactonizing protein; enolase, structural genomics, protein structure initiative, nysgrc; 1.80A {Kosmotoga olearia} | Back alignment and structure |
|---|
Probab=97.41 E-value=0.00067 Score=64.79 Aligned_cols=125 Identities=10% Similarity=0.095 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC--CCcEEEEeccCCCCCccHHH
Q 020423 136 LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYNQ 213 (326)
Q Consensus 136 ~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~--~~pv~vK~r~g~~~~~~~~e 213 (326)
++++++.++.+.+.||+.+.++.+ |. .+ .+.+++||+++ +.++.+....+|+..+
T Consensus 164 ~e~~~~~a~~~~~~G~~~iKlKv~-~~--------------~d----~~~v~avR~a~G~~~~L~vDaN~~w~~~~---- 220 (400)
T 3mwc_A 164 IETLIHQVEESLQEGYRRIKIKIK-PG--------------WD----VEPLQETRRAVGDHFPLWTDANSSFELDQ---- 220 (400)
T ss_dssp HHHHHHHHHHHHHHTCSCEEEECB-TT--------------BS----HHHHHHHHHHHCTTSCEEEECTTCCCGGG----
T ss_pred HHHHHHHHHHHHHcCCCEEEEEeC-cc--------------hH----HHHHHHHHHhcCCCCEEEEeCCCCCCHHH----
Confidence 899999999999899999999872 10 12 46677888876 5678888777776432
Q ss_pred HHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhC-CCh
Q 020423 214 LCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKG-AHH 292 (326)
Q Consensus 214 ~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~G-aD~ 292 (326)
.+ +.+.+++.|+++|. . ..++.+++.++++.+.. ++||.+...+.+.+++.++++.| +|.
T Consensus 221 -~~-~~~~l~~~~i~~iE----q------------P~~~~d~~~~~~l~~~~-~iPIa~dE~~~~~~~~~~~~~~~~~d~ 281 (400)
T 3mwc_A 221 -WE-TFKAMDAAKCLFHE----Q------------PLHYEALLDLKELGERI-ETPICLDESLISSRVAEFVAKLGISNI 281 (400)
T ss_dssp -HH-HHHHHGGGCCSCEE----S------------CSCTTCHHHHHHHHHHS-SSCEEESTTCCSHHHHHHHHHTTCCSE
T ss_pred -HH-HHHHHHhcCCCEEe----C------------CCChhhHHHHHHHHhhC-CCCEEEeCCcCCHHHHHHHHhcCCCCE
Confidence 23 34567788998884 1 12233577777877765 89999999999999999999965 899
Q ss_pred hhhhHHHHhC
Q 020423 293 VMVGRAAYQN 302 (326)
Q Consensus 293 V~iGRall~d 302 (326)
|++--.-...
T Consensus 282 v~~k~~~~GG 291 (400)
T 3mwc_A 282 WNIKIQRVGG 291 (400)
T ss_dssp EEECHHHHTS
T ss_pred EEEcchhhCC
Confidence 8876554433
|
| >1wbh_A KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} SCOP: c.1.10.1 PDB: 2c0a_A 1wau_A 1eua_A 1eun_A 1fq0_A* 1fwr_A* | Back alignment and structure |
|---|
Probab=97.40 E-value=0.0013 Score=57.32 Aligned_cols=48 Identities=17% Similarity=0.149 Sum_probs=40.1
Q ss_pred HHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHh-CCChhhhhHHHHhCCc
Q 020423 255 YEYYYALLRDFPDLTFTLNGGINTVDEVNAALRK-GAHHVMVGRAAYQNPW 304 (326)
Q Consensus 255 ~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~-GaD~V~iGRall~dP~ 304 (326)
.++++++.+..+++|+++.||| +++.+.++++. |+++|. |+++...++
T Consensus 144 ~~~lk~i~~~~~~ipvvaiGGI-~~~n~~~~l~agg~~~v~-gS~i~~~~~ 192 (214)
T 1wbh_A 144 VKALQAIAGPFSQVRFCPTGGI-SPANYRDYLALKSVLCIG-GSWLVPADA 192 (214)
T ss_dssp HHHHHHHHTTCTTCEEEEBSSC-CTTTHHHHHTSTTBSCEE-EGGGSCHHH
T ss_pred HHHHHHHhhhCCCCeEEEECCC-CHHHHHHHHhcCCCeEEE-eccccChhh
Confidence 5677787776668999999999 67899999997 899999 998875544
|
| >1pii_A N-(5'phosphoribosyl)anthranilate isomerase; bifunctional(isomerase and synthase); 2.00A {Escherichia coli} SCOP: c.1.2.4 c.1.2.4 PDB: 1jcm_P* 2kzh_A | Back alignment and structure |
|---|
Probab=97.37 E-value=0.002 Score=62.30 Aligned_cols=148 Identities=16% Similarity=0.106 Sum_probs=101.4
Q ss_pred CCCcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEec
Q 020423 123 EQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCR 202 (326)
Q Consensus 123 ~~~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r 202 (326)
.+-|+.-+=+..++-+ .. .++.+|+|.|=|....- ..+.+.++++..++ .|..+.+-+
T Consensus 107 v~lPvLrKDFI~d~~Q---i~-ea~~~GAD~ILLi~a~l----------------~~~~l~~l~~~a~~-lgm~~LvEv- 164 (452)
T 1pii_A 107 APQPILCKDFIIDPYQ---IY-LARYYQADACLLMLSVL----------------DDDQYRQLAAVAHS-LEMGVLTEV- 164 (452)
T ss_dssp CCSCEEEESCCCSHHH---HH-HHHHTTCSEEEEETTTC----------------CHHHHHHHHHHHHH-TTCEEEEEE-
T ss_pred cCCCeEEEeccCCHHH---HH-HHHHcCCCEEEEEcccC----------------CHHHHHHHHHHHHH-cCCeEEEEe-
Confidence 3567776655545432 22 27889999999986421 13457777777655 477766642
Q ss_pred cCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCC-CceEEEeCCCCCHHH
Q 020423 203 IGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFP-DLTFTLNGGINTVDE 281 (326)
Q Consensus 203 ~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~-~iPVIa~GgI~s~~d 281 (326)
.+.+|+.. . .+.|+|.|-+..|+- .. ...+++...++.+..+ ++++|+-|||.|++|
T Consensus 165 ------h~~eE~~~----A-~~lga~iIGinnr~L--~t---------~~~dl~~~~~L~~~ip~~~~vIaEsGI~t~ed 222 (452)
T 1pii_A 165 ------SNEEEQER----A-IALGAKVVGINNRDL--RD---------LSIDLNRTRELAPKLGHNVTVISESGINTYAQ 222 (452)
T ss_dssp ------CSHHHHHH----H-HHTTCSEEEEESEET--TT---------TEECTHHHHHHHHHHCTTSEEEEESCCCCHHH
T ss_pred ------CCHHHHHH----H-HHCCCCEEEEeCCCC--CC---------CCCCHHHHHHHHHhCCCCCeEEEECCCCCHHH
Confidence 23444322 2 358999999887642 11 1123555555555443 689999999999999
Q ss_pred HHHHHHhCCChhhhhHHHHhCCchhHHhHHHhhhC
Q 020423 282 VNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYG 316 (326)
Q Consensus 282 a~~~l~~GaD~V~iGRall~dP~l~~~~i~~~~~~ 316 (326)
+.++.+. +|+|.||.+++..++ ....+.+.+.+
T Consensus 223 v~~~~~~-a~avLVGealmr~~d-~~~~~~~l~~~ 255 (452)
T 1pii_A 223 VRELSHF-ANGFLIGSALMAHDD-LHAAVRRVLLG 255 (452)
T ss_dssp HHHHTTT-CSEEEECHHHHTCSC-HHHHHHHHHHC
T ss_pred HHHHHHh-CCEEEEcHHHcCCcC-HHHHHHHHHHH
Confidence 9999999 999999999999888 57777776654
|
| >3dip_A Enolase; structural genomics, isomerase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics, NYSGXRC, lyase; HET: SIC; 2.50A {Unidentified} | Back alignment and structure |
|---|
Probab=97.37 E-value=0.0019 Score=61.80 Aligned_cols=129 Identities=11% Similarity=-0.078 Sum_probs=86.2
Q ss_pred HHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccc-cCCHHHHHHHHHHHHhcCC--CcEEEEeccCCCCCccHHHHHH
Q 020423 140 AKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSL-MLDPKFVGEAMSVIAANTN--VPVSVKCRIGVDDHDSYNQLCD 216 (326)
Q Consensus 140 ~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl-~~r~~~l~eiv~avr~~~~--~pv~vK~r~g~~~~~~~~e~~~ 216 (326)
.+.++.+.+.||..+-++...+.. .+ -|... ..+++...+.+++||++++ .++.+...-+| +.++..+
T Consensus 161 ~~~a~~~~~~G~~~~K~~~~~~~~--~K---~G~~~~~~~~~~d~e~v~avR~a~g~d~~l~vDaN~~~----~~~~A~~ 231 (410)
T 3dip_A 161 GVLAESLVAEGYAAMKIWPFDDFA--SI---TPHHISLTDLKDGLEPFRKIRAAVGQRIEIMCELHSLW----GTHAAAR 231 (410)
T ss_dssp HHHHHHHHHTTCSEEEECTTHHHH--TT---CTTCCCHHHHHHHHHHHHHHHHHHTTSSEEEEECTTCB----CHHHHHH
T ss_pred HHHHHHHHHcCCCEEEECCccCcc--cc---ccCcCCHHHHHHHHHHHHHHHHHcCCCceEEEECCCCC----CHHHHHH
Confidence 455667778999999995211000 01 12111 0135677889999999884 56666655444 3455555
Q ss_pred HHHHHhhhCCccEEEEecCCcccCCCCcCCcCC-CCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhC-CChhh
Q 020423 217 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRT-IPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKG-AHHVM 294 (326)
Q Consensus 217 ~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~-~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~G-aD~V~ 294 (326)
+++.+++.|+++|.- . .++.+++.++++++.. ++||.+.+.+.+++++.++++.| +|.|+
T Consensus 232 -~~~~L~~~~i~~iEq----------------P~~~~~~~~~~~~l~~~~-~iPIa~dE~~~~~~~~~~~l~~~~~d~v~ 293 (410)
T 3dip_A 232 -ICNALADYGVLWVED----------------PIAKMDNIPAVADLRRQT-RAPICGGENLAGTRRFHEMLCADAIDFVM 293 (410)
T ss_dssp -HHHHGGGGTCSEEEC----------------CBSCTTCHHHHHHHHHHH-CCCEEECTTCCSHHHHHHHHHTTCCSEEE
T ss_pred -HHHHHHhcCCCEEEC----------------CCCCcccHHHHHHHHhhC-CCCEEecCCcCCHHHHHHHHHcCCCCeEe
Confidence 455678899999861 1 1223467777777664 89999999999999999999966 88887
Q ss_pred h
Q 020423 295 V 295 (326)
Q Consensus 295 i 295 (326)
+
T Consensus 294 ~ 294 (410)
T 3dip_A 294 L 294 (410)
T ss_dssp E
T ss_pred e
Confidence 6
|
| >1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00032 Score=69.91 Aligned_cols=78 Identities=14% Similarity=0.138 Sum_probs=57.2
Q ss_pred HHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCH-----------HHHHHHH
Q 020423 218 IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTV-----------DEVNAAL 286 (326)
Q Consensus 218 ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~-----------~da~~~l 286 (326)
+++.+++.|+|.|++-.-+....+. ...+...+.++++.+. .++||+..|||++. +++.+++
T Consensus 285 ~A~~~~~~Ga~~l~~~dl~~~~~~~------~~~~~~~~~i~~i~~~-~~ipi~vgGGIr~~~d~~~~~~~~~~~a~~~l 357 (555)
T 1jvn_A 285 LAQKYYQQGADEVTFLNITSFRDCP------LKDTPMLEVLKQAAKT-VFVPLTVGGGIKDIVDVDGTKIPALEVASLYF 357 (555)
T ss_dssp HHHHHHHTTCSEEEEEEEC---CCC------GGGCHHHHHHHHHTTT-CCSCEEEESSCSCEECTTCCEECHHHHHHHHH
T ss_pred HHHHHHHcCCCEEEEEeCCcccccc------CCCchHHHHHHHHHhh-CCCcEEEeCccccchhcccccchHHHHHHHHH
Confidence 5667778999999986544321110 0112246777777665 49999999999998 5599999
Q ss_pred HhCCChhhhhHHHHhC
Q 020423 287 RKGAHHVMVGRAAYQN 302 (326)
Q Consensus 287 ~~GaD~V~iGRall~d 302 (326)
+.|||.|.+|++.+.|
T Consensus 358 ~aGad~V~igt~~~~~ 373 (555)
T 1jvn_A 358 RSGADKVSIGTDAVYA 373 (555)
T ss_dssp HHTCSEEEECHHHHHH
T ss_pred HcCCCEEEECCHHhhC
Confidence 9999999999999884
|
| >4hnl_A Mandelate racemase/muconate lactonizing enzyme; dehydratase, magnesium binding, enzyme function initiative,; 1.48A {Enterococcus gallinarum EG2} PDB: 3s47_A | Back alignment and structure |
|---|
Probab=97.34 E-value=0.0029 Score=60.71 Aligned_cols=149 Identities=13% Similarity=0.033 Sum_probs=99.1
Q ss_pred CcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCccc----CCCCcccccc---CCHHHHHHHHHHHHhcCCC--
Q 020423 125 HPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVA----GHGCFGVSLM---LDPKFVGEAMSVIAANTNV-- 195 (326)
Q Consensus 125 ~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~----r~d~yGgsl~---~r~~~l~eiv~avr~~~~~-- 195 (326)
-|+.....+.+++++.+.++++.+.||..+.++.|....... ..+.+.+... ...+...+.++++|+++|.
T Consensus 143 v~~y~~~~~~~~~~~~~~a~~~~~~G~~~~K~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~v~avR~a~G~~~ 222 (421)
T 4hnl_A 143 IPAYTHAVADNLDDLYHEIDRFLAAGYRYIRCQLGFYGGNPSQLQTPEEPISGSYFDQTDYMETTLKMFAAIKEKYGNQF 222 (421)
T ss_dssp EEEEEEEEESSHHHHHHHHHHHHHTTCSEEEEEESCCCCCGGGSCCCSSCCSSEECCHHHHHHHHHHHHHHHHHHHTTSS
T ss_pred cceecccCCCCHHHHHHHHHHHHHhhHHHHhhccccccCCchhccccccccccccccchhHHHHHHHHHHHHHHHhCCCc
Confidence 345555566789999999999999999999998875431110 0111122221 2345667788889988854
Q ss_pred cEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCC
Q 020423 196 PVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGG 275 (326)
Q Consensus 196 pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~Gg 275 (326)
.+.+....+| +.++.++ +.+.+++.++.+|. . .+++.+++.++++++.. ++||.+.-.
T Consensus 223 ~l~vDan~~~----~~~~A~~-~~~~l~~~~i~~iE----e------------P~~~~d~~~~~~l~~~~-~ipIa~dE~ 280 (421)
T 4hnl_A 223 QMLHDVHERL----HPNQAIQ-FAKAAEPYQLFFLE----D------------ILPPDQSHWLTQLRSQS-ATPIATGEL 280 (421)
T ss_dssp EEEEECTTCS----CHHHHHH-HHHHHGGGCCSEEE----C------------CSCGGGGGGHHHHHTTC-CCCEEECTT
T ss_pred eEeccccccC----CHHHHHH-HHHHhhhhhhcccc----c------------CCcccchHHHHHHHhcC-CCCeecCcc
Confidence 4444433333 3455555 45667888988874 1 12334566677777664 899999999
Q ss_pred CCCHHHHHHHHHhC-CChhhh
Q 020423 276 INTVDEVNAALRKG-AHHVMV 295 (326)
Q Consensus 276 I~s~~da~~~l~~G-aD~V~i 295 (326)
+.+..++.++++.| +|.|++
T Consensus 281 ~~~~~~~~~~i~~~a~d~v~~ 301 (421)
T 4hnl_A 281 FNNPMEWQELVKNRQIDFMRA 301 (421)
T ss_dssp CCSGGGTHHHHHTTCCSEECC
T ss_pred eehhHHHHHHHhcCCceEEEe
Confidence 99999999999866 788775
|
| >4eiv_A Deoxyribose-phosphate aldolase; chemotherapy, brain cysts, bradyzoite, structural genomics, for structural genomics of infectious diseases; 1.37A {Toxoplasma gondii} PDB: 3qyq_A* | Back alignment and structure |
|---|
Probab=97.27 E-value=0.0025 Score=57.80 Aligned_cols=132 Identities=9% Similarity=0.034 Sum_probs=83.5
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCcccccc---CCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCcc
Q 020423 134 SNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLM---LDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDS 210 (326)
Q Consensus 134 ~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~---~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~ 210 (326)
...+.-..-++.+.+.|+|.||+=+ + ||.-.. .+.+.+.+-+++|++.++ +..+|+-+-...-.+
T Consensus 97 ~~~e~K~~Ea~~Av~~GAdEIDmVi-----n------ig~lk~~~~g~~~~V~~eI~~v~~a~~-~~~lKVIlEt~~Lt~ 164 (297)
T 4eiv_A 97 GTPDTVSLEAVGALKDGADEIECLI-----D------WRRMNENVADGESRIRLLVSEVKKVVG-PKTLKVVLSGGELQG 164 (297)
T ss_dssp CCHHHHHHHHHHHHHTTCSEEEEEC-----C------THHHHHCHHHHHHHHHHHHHHHHHHHT-TSEEEEECCSSCCCC
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeee-----e------HHHHhcccCCcHHHHHHHHHHHHHHhc-CCceEEEEecccCCc
Confidence 3456566677788889999999853 1 344444 467888888899988885 456776653222112
Q ss_pred HHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhc--------------------CCCceE
Q 020423 211 YNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRD--------------------FPDLTF 270 (326)
Q Consensus 211 ~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~--------------------~~~iPV 270 (326)
++.+....++..++|+|+|--+.+... .|. .+.+..++.+.+++ ..++-|
T Consensus 165 -~e~i~~A~~ia~~AGADFVKTSTGf~~-~gA--------T~edV~lM~~~v~~~~~~~~~~~~~~~~~~~~~tg~~vgv 234 (297)
T 4eiv_A 165 -GDIISRAAVAALEGGADFLQTSSGLGA-THA--------TMFTVHLISIALREYMVRENERIRVEGINREGAAVRCIGI 234 (297)
T ss_dssp -HHHHHHHHHHHHHHTCSEEECCCSSSS-CCC--------CHHHHHHHHHHHHHHHCC------------------CCEE
T ss_pred -HHHHHHHHHHHHHhCCCEEEcCCCCCC-CCC--------CHHHHHHHHHHHHHHhccccccccccccccccccCCceeE
Confidence 232222345556799999987765421 111 11223444444431 136889
Q ss_pred EEe-CCCCCHHHHHHHHH
Q 020423 271 TLN-GGINTVDEVNAALR 287 (326)
Q Consensus 271 Ia~-GgI~s~~da~~~l~ 287 (326)
=++ |||+|.+++.++++
T Consensus 235 KAs~GGIrt~e~A~~~i~ 252 (297)
T 4eiv_A 235 KIEVGDVHMAETADFLMQ 252 (297)
T ss_dssp EEECTTCCHHHHHHHHHH
T ss_pred EecCCCCCCHHHHHHHHH
Confidence 999 99999999999998
|
| >1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function; HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=97.23 E-value=0.0024 Score=56.03 Aligned_cols=47 Identities=19% Similarity=0.219 Sum_probs=39.2
Q ss_pred HHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHh-CCChhhhhHHHHhCC
Q 020423 255 YEYYYALLRDFPDLTFTLNGGINTVDEVNAALRK-GAHHVMVGRAAYQNP 303 (326)
Q Consensus 255 ~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~-GaD~V~iGRall~dP 303 (326)
.++++++.+..+++|+++.||| +++.+.++++. |+++|. |+++...+
T Consensus 145 ~~~lk~l~~~~~~ipvvaiGGI-~~~N~~~~l~agga~~v~-gS~i~~~~ 192 (224)
T 1vhc_A 145 VKMIKALLGPYAQLQIMPTGGI-GLHNIRDYLAIPNIVACG-GSWFVEKK 192 (224)
T ss_dssp HHHHHHHHTTTTTCEEEEBSSC-CTTTHHHHHTSTTBCCEE-ECGGGCHH
T ss_pred HHHHHHHHhhCCCCeEEEECCc-CHHHHHHHHhcCCCEEEE-EchhcCcc
Confidence 5677777776668999999999 67899999997 899999 88887533
|
| >3b8i_A PA4872 oxaloacetate decarboxylase; alpha/beta barrel, helix swapping, lyase; 1.90A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=97.23 E-value=0.011 Score=53.78 Aligned_cols=199 Identities=11% Similarity=0.059 Sum_probs=116.9
Q ss_pred CCCCChHHHHHHHHHcCCCcEEEecce--eecccccccc---chhhhhh-----cCCCCCcEEEEe---cCCCHHHHHHH
Q 020423 76 MMDWTDNHYRTLARLISKHAWLYTEML--AAETIIYQQG---NLDRFLA-----FSPEQHPIVLQI---GGSNLDNLAKA 142 (326)
Q Consensus 76 M~~~s~~~~r~~~~~~Gg~gli~te~~--~~~~~~~~~~---~~~~~~~-----~~~~~~piivQL---~g~~~~~f~~a 142 (326)
|.+.-|.....++.+.| +..+++... ....+.+.+. ..+..+. ....+.|+++-+ +| ++++..+.
T Consensus 25 ~~~a~D~~sA~i~e~aG-f~ai~vs~s~~a~~~lG~pD~~~vt~~em~~~~~~I~r~~~~PviaD~d~Gyg-~~~~~~~~ 102 (287)
T 3b8i_A 25 TASVFDPMSARIAADLG-FECGILGGSVASLQVLAAPDFALITLSEFVEQATRIGRVARLPVIADADHGYG-NALNVMRT 102 (287)
T ss_dssp CEECCSHHHHHHHHHTT-CSCEEECHHHHHHHHHSCCSSSCSCHHHHHHHHHHHHTTCSSCEEEECTTCSS-SHHHHHHH
T ss_pred EecCCCHHHHHHHHHcC-CCEEEeCcHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEECCCCCC-CHHHHHHH
Confidence 33555666666666665 766666543 2111222221 1122211 234567888776 34 78899999
Q ss_pred HHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC-CCcEEEEeccCCCCCccHHHHHHHHHHH
Q 020423 143 TELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFIYKV 221 (326)
Q Consensus 143 A~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~-~~pv~vK~r~g~~~~~~~~e~~~~ia~~ 221 (326)
++++.++|+++|.|--+... +|.++..+. +-..+...+-|++++++- +.++.+--|... ....+++.++. ++.
T Consensus 103 v~~l~~aGa~gv~iED~~~p---Krcgh~~gk-l~~~~e~~~~I~aa~~a~~~~~~~i~aRtda-a~~gl~~ai~R-a~a 176 (287)
T 3b8i_A 103 VVELERAGIAALTIEDTLLP---AQFGRKSTD-LICVEEGVGKIRAALEARVDPALTIIARTNA-ELIDVDAVIQR-TLA 176 (287)
T ss_dssp HHHHHHHTCSEEEEECBCCS---CCTTTCTTC-BCCHHHHHHHHHHHHHHCCSTTSEEEEEEET-TTSCHHHHHHH-HHH
T ss_pred HHHHHHhCCeEEEEcCCCCc---cccCCCCCC-ccCHHHHHHHHHHHHHcCCCCCcEEEEechh-hhcCHHHHHHH-HHH
Confidence 99999999999999765432 233444555 455555556666665543 333433333322 22345666664 456
Q ss_pred hhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEe-CCCCCHHHHHHHHHhCCChhhhhHHHH
Q 020423 222 SSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLN-GGINTVDEVNAALRKGAHHVMVGRAAY 300 (326)
Q Consensus 222 le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~-GgI~s~~da~~~l~~GaD~V~iGRall 300 (326)
++++|+|.|.+++-. ..+.+.++.+.. ++|++.. ||-...-+..++-+.|+..|..|-.++
T Consensus 177 y~eAGAd~i~~e~~~-----------------~~~~~~~i~~~~-~~P~ii~~~g~~~~~~~~eL~~lGv~~v~~~~~~~ 238 (287)
T 3b8i_A 177 YQEAGADGICLVGVR-----------------DFAHLEAIAEHL-HIPLMLVTYGNPQLRDDARLARLGVRVVVNGHAAY 238 (287)
T ss_dssp HHHTTCSEEEEECCC-----------------SHHHHHHHHTTC-CSCEEEECTTCGGGCCHHHHHHTTEEEEECCCHHH
T ss_pred HHHcCCCEEEecCCC-----------------CHHHHHHHHHhC-CCCEEEeCCCCCCCCCHHHHHHcCCcEEEEChHHH
Confidence 778999999988531 145666777665 8998843 332222235567778888887775544
|
| >3nl6_A Thiamine biosynthetic bifunctional enzyme; thiamin biosynthesis, eukaryoyes, transferase; HET: TPS ACP; 2.61A {Candida glabrata} PDB: 3nl2_A* 3nl5_A* 3nl3_A* 3nm3_A* 3nm1_A* | Back alignment and structure |
|---|
Probab=97.23 E-value=0.0091 Score=59.10 Aligned_cols=88 Identities=11% Similarity=-0.041 Sum_probs=57.6
Q ss_pred hhCC---ccEEEEecCCcccCCCCcCCcCCC-CCccHHHHHHHHhc-----CCCceEEEeCCCCCHHHHHHHHH------
Q 020423 223 SLSP---TRHFIIHSRKALLNGISPAENRTI-PPLKYEYYYALLRD-----FPDLTFTLNGGINTVDEVNAALR------ 287 (326)
Q Consensus 223 e~~G---vd~I~v~~~~~~~~g~~~~~~~~~-~~~~~~~i~~i~~~-----~~~iPVIa~GgI~s~~da~~~l~------ 287 (326)
.+.| +|||-+..-...... . ... ++..++.+.++.+. ..++||++-||| +++++.++++
T Consensus 125 ~~~G~~~aDYv~~Gpvf~T~tK---~--~~~~~~~G~~~l~~i~~~~~~~~~~~iPvvAIGGI-~~~ni~~v~~~~~~~g 198 (540)
T 3nl6_A 125 SKMGPDMVDYIGVGTLFPTLTK---K--NPKKAPMGTAGAIRVLDALERNNAHWCRTVGIGGL-HPDNIERVLYQCVSSN 198 (540)
T ss_dssp HHTCC--CCEEEESCCSCCCCC---C------CCCHHHHHHHHHHHHHHTTCTTCEEEEESSC-CTTTHHHHHHHCBCTT
T ss_pred HHcCCCCCCEEEEcCCCCCCCC---C--CcCCCCCCHHHHHHHHHHHHhhccCCCCEEEEcCC-CHHHHHHHHHhhcccc
Confidence 3578 999988543221110 0 111 23446666665543 148999999999 7899999998
Q ss_pred --hCCChhhhhHHHHhCCc--hhHHhHHHhhhC
Q 020423 288 --KGAHHVMVGRAAYQNPW--YTLGHVDTAIYG 316 (326)
Q Consensus 288 --~GaD~V~iGRall~dP~--l~~~~i~~~~~~ 316 (326)
.|+|+|.++++++..++ -..+.+.+.+..
T Consensus 199 ~~~GadgvAVvsaI~~a~dp~~a~~~l~~~~~~ 231 (540)
T 3nl6_A 199 GKRSLDGICVVSDIIASLDAAKSTKILRGLIDK 231 (540)
T ss_dssp SSCBCSCEEESHHHHTCTTHHHHHHHHHHHHHC
T ss_pred cccCceEEEEeHHHhcCCCHHHHHHHHHHHHHh
Confidence 78999999999997544 344444444444
|
| >3ceu_A Thiamine phosphate pyrophosphorylase; TIM barrel-like protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00037 Score=60.53 Aligned_cols=74 Identities=12% Similarity=-0.051 Sum_probs=52.9
Q ss_pred CCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcC-CCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhCC
Q 020423 225 SPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF-PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNP 303 (326)
Q Consensus 225 ~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~-~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~dP 303 (326)
.|+|++.+..-.... .. + ...++..++.++++.+.. .++||++.|||+ ++.+.++++.|+++|.+++++...+
T Consensus 106 ~GaDyv~~g~vf~t~-sk-~---~~~~~~g~~~l~~~~~~~~~~iPviaiGGI~-~~nv~~~~~~Ga~gVav~s~i~~~~ 179 (210)
T 3ceu_A 106 HFYDYVFMSPIYDSI-SK-V---NYYSTYTAEELREAQKAKIIDSKVMALGGIN-EDNLLEIKDFGFGGAVVLGDLWNKF 179 (210)
T ss_dssp GGSSEEEECCCC--------------CCCCHHHHHHHHHTTCSSTTEEEESSCC-TTTHHHHHHTTCSEEEESHHHHTTC
T ss_pred hCCCEEEECCcCCCC-CC-C---CCCCCCCHHHHHHHHHhcCCCCCEEEECCCC-HHHHHHHHHhCCCEEEEhHHhHcCC
Confidence 799999886532110 00 0 011234578887777653 489999999997 9999999999999999999998754
Q ss_pred c
Q 020423 304 W 304 (326)
Q Consensus 304 ~ 304 (326)
+
T Consensus 180 d 180 (210)
T 3ceu_A 180 D 180 (210)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >3cu2_A Ribulose-5-phosphate 3-epimerase; YP_718263.1, ribulose-PHOS epimerase family, structural genomics, joint center for STR genomics, JCSG; 1.91A {Haemophilus somnus} | Back alignment and structure |
|---|
Probab=97.19 E-value=0.0014 Score=58.09 Aligned_cols=134 Identities=10% Similarity=0.056 Sum_probs=83.4
Q ss_pred EEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC--------CCcEEE
Q 020423 128 VLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--------NVPVSV 199 (326)
Q Consensus 128 ivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~--------~~pv~v 199 (326)
-+-|+..+++.|.+. +.++|+|+|-+|..... . +.+.++.+++.. |.-+.+
T Consensus 73 DvhLMv~~p~~~i~~---~~~aGAd~itvH~ea~~---------------~---~~~~i~~i~~~~~~~~~~~~g~~~gv 131 (237)
T 3cu2_A 73 DVHLMVRNQLEVAKA---VVANGANLVTLQLEQYH---------------D---FALTIEWLAKQKTTYANQVYPVLIGA 131 (237)
T ss_dssp EEEEECSCHHHHHHH---HHHTTCSEEEEETTCTT---------------S---HHHHHHHHTTCEEEETTEEEECEEEE
T ss_pred CeEEEEECHHHHHHH---HHHcCCCEEEEecCCcc---------------c---HHHHHHHHHhcccccccccCCceEEE
Confidence 677777788766554 56789999999964321 1 345666665531 444555
Q ss_pred EeccCCCCCccHHHHHHHHHHHhhhCCccEEEE---ecCCcccCCCCcCCcCCCCCccHHHHHHHHhcC----CCceEEE
Q 020423 200 KCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFII---HSRKALLNGISPAENRTIPPLKYEYYYALLRDF----PDLTFTL 272 (326)
Q Consensus 200 K~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v---~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~----~~iPVIa 272 (326)
-+.+.... +. +..++ .++|+|-+ +.+.. |. ...+...+.++++++.. .++||.+
T Consensus 132 ~l~p~Tp~-----~~---l~~~l--~~~D~vlvMsv~pgfg---gq------~f~~~~l~ki~~lr~~~~~~~~~~~I~v 192 (237)
T 3cu2_A 132 CLCPETPI-----SE---LEPYL--DQIDVIQLLTLDPRNG---TK------YPSELILDRVIQVEKRLGNRRVEKLINI 192 (237)
T ss_dssp EECTTSCG-----GG---GTTTT--TTCSEEEEESEETTTT---EE------CCHHHHHHHHHHHHHHHGGGGGGCEEEE
T ss_pred EEeCCChH-----HH---HHHHh--hcCceeeeeeeccCcC---Ce------ecChhHHHHHHHHHHHHHhcCCCceEEE
Confidence 55433211 11 12222 37999966 44332 11 11222345555544332 2589999
Q ss_pred eCCCCCHHHHHHHHH--hCCChhhhhHHHHhC
Q 020423 273 NGGINTVDEVNAALR--KGAHHVMVGRAAYQN 302 (326)
Q Consensus 273 ~GgI~s~~da~~~l~--~GaD~V~iGRall~d 302 (326)
-|||+ .+.+.++.+ .|||.+.+||+++..
T Consensus 193 dGGI~-~~~~~~~~~~~aGad~~VvGSaIf~~ 223 (237)
T 3cu2_A 193 DGSMT-LELAKYFKQGTHQIDWLVSGSALFSG 223 (237)
T ss_dssp ESSCC-HHHHHHHHHSSSCCCCEEECGGGGSS
T ss_pred ECCcC-HHHHHHHHHhCCCCcEEEEeeHHhCC
Confidence 99995 899999999 999999999999974
|
| >3jr2_A Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulonate-6-phosphate decarboxylase, ULAD, niaid,CSG bound, biosynthetic protein; HET: MSE; 1.80A {Vibrio cholerae} SCOP: c.1.2.0 PDB: 3ieb_A* | Back alignment and structure |
|---|
Probab=97.19 E-value=0.00031 Score=61.36 Aligned_cols=142 Identities=15% Similarity=0.108 Sum_probs=83.6
Q ss_pred CCcEEEEec-CCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEec
Q 020423 124 QHPIVLQIG-GSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCR 202 (326)
Q Consensus 124 ~~piivQL~-g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r 202 (326)
+.++++-+. ...++.|. +.+.++|+|+|-+|...+ .+.+.++++.+++. +....+. -
T Consensus 59 ~~~i~ld~~l~d~p~~~~---~~~~~aGad~i~vh~~~~-----------------~~~~~~~~~~~~~~-g~~~~~d-~ 116 (218)
T 3jr2_A 59 NHILVCDMKTTDGGAILS---RMAFEAGADWITVSAAAH-----------------IATIAACKKVADEL-NGEIQIE-I 116 (218)
T ss_dssp TSEEEEEEEECSCHHHHH---HHHHHHTCSEEEEETTSC-----------------HHHHHHHHHHHHHH-TCEEEEE-C
T ss_pred CCcEEEEEeecccHHHHH---HHHHhcCCCEEEEecCCC-----------------HHHHHHHHHHHHHh-CCcccee-e
Confidence 345654432 13455544 667788999999985211 23355667776653 5444332 2
Q ss_pred cCCCCCccHHHHHHHHHHHhhhCCccEEEEecC-CcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHH
Q 020423 203 IGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSR-KALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDE 281 (326)
Q Consensus 203 ~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~-~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~d 281 (326)
++.. +.++..+ + .+.|+|++.++.. +....|. ...+...+.++++.. .++||++.||| +++.
T Consensus 117 l~~~---T~~~~~~----~-~~~g~d~v~~~~~~~~~~~g~------~~~~~~l~~i~~~~~--~~~pi~v~GGI-~~~~ 179 (218)
T 3jr2_A 117 YGNW---TMQDAKA----W-VDLGITQAIYHRSRDAELAGI------GWTTDDLDKMRQLSA--LGIELSITGGI-VPED 179 (218)
T ss_dssp CSSC---CHHHHHH----H-HHTTCCEEEEECCHHHHHHTC------CSCHHHHHHHHHHHH--TTCEEEEESSC-CGGG
T ss_pred eecC---CHHHHHH----H-HHcCccceeeeeccccccCCC------cCCHHHHHHHHHHhC--CCCCEEEECCC-CHHH
Confidence 2221 2333222 2 3469999877432 1111111 011122344555443 48999999999 5999
Q ss_pred HHHHHHhCCChhhhhHHHHhCCc
Q 020423 282 VNAALRKGAHHVMVGRAAYQNPW 304 (326)
Q Consensus 282 a~~~l~~GaD~V~iGRall~dP~ 304 (326)
+.++++.|||+|.+||++...++
T Consensus 180 ~~~~~~aGAd~vvvGsaI~~a~d 202 (218)
T 3jr2_A 180 IYLFEGIKTKTFIAGRALAGAEG 202 (218)
T ss_dssp GGGGTTSCEEEEEESGGGSHHHH
T ss_pred HHHHHHcCCCEEEEchhhcCCCC
Confidence 99999999999999999886433
|
| >3eoo_A Methylisocitrate lyase; seattle structural genomics center for infectious disease, ssgcid; 2.90A {Burkholderia pseudomallei 1655} SCOP: c.1.12.7 | Back alignment and structure |
|---|
Probab=97.15 E-value=0.0053 Score=56.13 Aligned_cols=201 Identities=10% Similarity=0.082 Sum_probs=113.7
Q ss_pred CCChHHHHHHHHHcCCCcEEEecceeec--ccccccc---chhhhhh----c-CCCCCcEEEEec-C-CCHHHHHHHHHH
Q 020423 78 DWTDNHYRTLARLISKHAWLYTEMLAAE--TIIYQQG---NLDRFLA----F-SPEQHPIVLQIG-G-SNLDNLAKATEL 145 (326)
Q Consensus 78 ~~s~~~~r~~~~~~Gg~gli~te~~~~~--~~~~~~~---~~~~~~~----~-~~~~~piivQL~-g-~~~~~f~~aA~~ 145 (326)
+.-|.....++.+.| +..+++...+.. .+.+.+. ..+..+. + ...+.|+++-+= | .++++..+.+++
T Consensus 28 ~a~D~~sA~l~e~aG-f~ai~vs~~s~a~~~~G~pD~~~vt~~em~~~~~~I~r~~~~PviaD~d~Gyg~~~~v~~~v~~ 106 (298)
T 3eoo_A 28 GAITAYAAKMAEAVG-FKAVYLSGGGVAANSLGIPDLGISTMDDVLVDANRITNATNLPLLVDIDTGWGGAFNIARTIRS 106 (298)
T ss_dssp ECSSHHHHHHHHHHT-CSCEEECHHHHHHHTTCCCSSSCCCHHHHHHHHHHHHHHCCSCEEEECTTCSSSHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHcC-CCEEEECcHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhhcCCeEEEECCCCCCCHHHHHHHHHH
Confidence 445566666655555 666666532211 1222221 1111111 1 234578888762 2 278889999999
Q ss_pred HHHCCCCEEEecCCCCCCcccCCCCccc-cccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHHHHhhh
Q 020423 146 ANAYNYDEINLNCGCPSPKVAGHGCFGV-SLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSL 224 (326)
Q Consensus 146 a~~aG~d~Iein~g~P~~~~~r~d~yGg-sl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~ 224 (326)
+.++|+.+|.|--.... +|.++.++ .+....+++..|-.++....+.++.+--|........+++.++.. +.+.+
T Consensus 107 l~~aGaagv~iEDq~~~---k~cGh~~gk~l~~~~e~~~ri~Aa~~A~~~~~~~I~ARTDa~~~~gldeai~Ra-~ay~~ 182 (298)
T 3eoo_A 107 FIKAGVGAVHLEDQVGQ---KRCGHRPGKECVPAGEMVDRIKAAVDARTDETFVIMARTDAAAAEGIDAAIERA-IAYVE 182 (298)
T ss_dssp HHHTTCSEEEEECBCCC---CCTTCCCCCCBCCHHHHHHHHHHHHHHCSSTTSEEEEEECTHHHHHHHHHHHHH-HHHHH
T ss_pred HHHhCCeEEEECCCCCC---cccCCCCCCeecCHHHHHHHHHHHHHhccCCCeEEEEeehhhhhcCHHHHHHHH-HhhHh
Confidence 99999999999754321 23343343 344444455555444433335555555555322122355555543 34567
Q ss_pred CCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEe---CCCCCHHHHHHHHHhCCChhhhhHHHHh
Q 020423 225 SPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLN---GGINTVDEVNAALRKGAHHVMVGRAAYQ 301 (326)
Q Consensus 225 ~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~---GgI~s~~da~~~l~~GaD~V~iGRall~ 301 (326)
+|+|.|-+++.. ..+.+.++.+.. ++||.+| +|-...-...++-+.|+..|..|-.++.
T Consensus 183 AGAD~if~~~~~-----------------~~ee~~~~~~~~-~~Pl~~n~~~~g~tp~~~~~eL~~lGv~~v~~~~~~~r 244 (298)
T 3eoo_A 183 AGADMIFPEAMK-----------------TLDDYRRFKEAV-KVPILANLTEFGSTPLFTLDELKGANVDIALYCCGAYR 244 (298)
T ss_dssp TTCSEEEECCCC-----------------SHHHHHHHHHHH-CSCBEEECCTTSSSCCCCHHHHHHTTCCEEEECSHHHH
T ss_pred cCCCEEEeCCCC-----------------CHHHHHHHHHHc-CCCeEEEeccCCCCCCCCHHHHHHcCCeEEEEchHHHH
Confidence 999999988642 145566676665 6898776 4322112355666789999988876654
|
| >1qap_A Quinolinic acid phosphoribosyltransferase; glycosyltransferase, NAD biosynthesis; HET: NTM; 2.80A {Salmonella typhimurium} SCOP: c.1.17.1 d.41.2.1 | Back alignment and structure |
|---|
Probab=97.09 E-value=0.0032 Score=57.60 Aligned_cols=108 Identities=13% Similarity=0.125 Sum_probs=69.9
Q ss_pred cCCCCccccccC--CHHH---HHHHHHHHHhcCCC-cEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCccc
Q 020423 166 AGHGCFGVSLML--DPKF---VGEAMSVIAANTNV-PVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALL 239 (326)
Q Consensus 166 ~r~d~yGgsl~~--r~~~---l~eiv~avr~~~~~-pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~ 239 (326)
+|.+.++.-+.. ...+ +.+-++++|+..+. ++.+- .+++++..+ . .++|+|+|-++..
T Consensus 174 hr~~l~d~vlikdnhi~~~Gti~~ai~~~r~~~~~~kI~ve-------v~tlee~~e----A-~~aGaD~I~ld~~---- 237 (296)
T 1qap_A 174 HRLGLTDAFLIKENHIIASGSVRQAVEKAFWLHPDVPVEVE-------VENLDELDD----A-LKAGADIIMLDNF---- 237 (296)
T ss_dssp CCSSSSSCEEECHHHHHHHSSHHHHHHHHHHHSTTSCEEEE-------ESSHHHHHH----H-HHTTCSEEEESSC----
T ss_pred hccccccEEEEEcCCeeccCCHHHHHHHHHHhCCCCcEEEE-------eCCHHHHHH----H-HHcCCCEEEECCC----
Confidence 444444444433 3444 45667777776643 44442 123444433 2 2589999988642
Q ss_pred CCCCcCCcCCCCCccHHHHHHHHhcC-CCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhCCc
Q 020423 240 NGISPAENRTIPPLKYEYYYALLRDF-PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW 304 (326)
Q Consensus 240 ~g~~~~~~~~~~~~~~~~i~~i~~~~-~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~dP~ 304 (326)
..+.+++.++.. .++||.++||| +.+.+.++.+.|+|.+.+|+....-|+
T Consensus 238 --------------~~e~l~~~v~~~~~~~~I~ASGGI-t~~~i~~~a~~GvD~isvGsli~~a~~ 288 (296)
T 1qap_A 238 --------------NTDQMREAVKRVNGQARLEVSGNV-TAETLREFAETGVDFISVGALTKHVRA 288 (296)
T ss_dssp --------------CHHHHHHHHHTTCTTCCEEECCCS-CHHHHHHHHHTTCSEEECSHHHHEEEC
T ss_pred --------------CHHHHHHHHHHhCCCCeEEEECCC-CHHHHHHHHHcCCCEEEEeHHHcCCCC
Confidence 134455555543 26999999999 999999999999999999996655554
|
| >3dgb_A Muconate cycloisomerase; muconate lactonizing enzyme, muconolactone binding, isomeras structural genomics, PSI-2; HET: MUC; 1.70A {Pseudomonas fluorescens} PDB: 3ct2_A* 3fj4_A* 1muc_A 1bkh_A 3muc_A 2muc_A 1f9c_A | Back alignment and structure |
|---|
Probab=97.08 E-value=0.0083 Score=56.79 Aligned_cols=129 Identities=12% Similarity=0.026 Sum_probs=88.6
Q ss_pred CCHHHH-HHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCC--CcEEEEeccCCCCCcc
Q 020423 134 SNLDNL-AKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTN--VPVSVKCRIGVDDHDS 210 (326)
Q Consensus 134 ~~~~~f-~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~--~pv~vK~r~g~~~~~~ 210 (326)
.++++. .++++.+.+.||..+-+..|.. .++.-.+.+++||++++ .++.+....+|+
T Consensus 147 ~~~~~~~~~~~~~~~~~G~~~~KiKvg~~----------------~~~~d~~~v~avR~a~g~~~~l~vDaN~~~~---- 206 (382)
T 3dgb_A 147 GDTAKDIAEAQKMLDLRRHRIFKLKIGAG----------------EVDRDLAHVIAIKKALGDSASVRVDVNQAWD---- 206 (382)
T ss_dssp SCHHHHHHHHHHHHHTTSCSEEEEECCSS----------------CHHHHHHHHHHHHHHHGGGSEEEEECTTCBC----
T ss_pred CChHHHHHHHHHHHHhCCCCEEEEeeCCC----------------CHHHHHHHHHHHHHHcCCCCeEEEeCCCCCC----
Confidence 355554 4444445557999999976531 24455678888888774 567777666554
Q ss_pred HHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhC-
Q 020423 211 YNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKG- 289 (326)
Q Consensus 211 ~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~G- 289 (326)
.++..+ +.+.+++.|+.+|. . ..++.+++.++++.+.. ++||.+...+.+.+++.++++.+
T Consensus 207 ~~~A~~-~~~~l~~~~i~~iE----q------------P~~~~d~~~~~~l~~~~-~ipIa~dE~~~~~~~~~~~~~~~~ 268 (382)
T 3dgb_A 207 EAVALR-ACRILGGNGIDLIE----Q------------PISRNNRAGMVRLNASS-PAPIMADESIECVEDAFNLAREGA 268 (382)
T ss_dssp HHHHHH-HHHHHHTTTCCCEE----C------------CBCTTCHHHHHHHHHHC-SSCEEESTTCSSHHHHHHHHHHTC
T ss_pred HHHHHH-HHHHHhhcCcCeee----C------------CCCccCHHHHHHHHHhC-CCCEEeCCCcCCHHHHHHHHHcCC
Confidence 344444 35567788988874 1 12334577788887765 89999999999999999999854
Q ss_pred CChhhhhHHHH
Q 020423 290 AHHVMVGRAAY 300 (326)
Q Consensus 290 aD~V~iGRall 300 (326)
+|.|++--.-.
T Consensus 269 ~d~v~~k~~~~ 279 (382)
T 3dgb_A 269 ASVFALKIAKN 279 (382)
T ss_dssp CSEEEECHHHH
T ss_pred CCEEEeccccc
Confidence 89888754433
|
| >4e8g_A Enolase, mandelate racemase/muconate lactonizing enzyme, N domain protein; putative racemase, nysgrc, structural genomics, PSI-biology; 2.00A {Paracoccus denitrificans} | Back alignment and structure |
|---|
Probab=97.06 E-value=0.011 Score=56.20 Aligned_cols=132 Identities=11% Similarity=0.061 Sum_probs=94.3
Q ss_pred EEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCC---CcEEEEeccC
Q 020423 128 VLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTN---VPVSVKCRIG 204 (326)
Q Consensus 128 ivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~---~pv~vK~r~g 204 (326)
-..+...+++++.+.++.+.+.||..+-++.|++ +++.-.+.+++||++++ .++.+....+
T Consensus 157 y~s~~~~~~e~~~~~a~~~~~~G~~~~KlKvg~~----------------~~~~d~~~v~avR~a~gg~~~~L~vDaN~~ 220 (391)
T 4e8g_A 157 YYATGIGQPDEIARIAAEKVAEGFPRLQIKIGGR----------------PVEIDIETVRKVWERIRGTGTRLAVDGNRS 220 (391)
T ss_dssp CEEECSCCHHHHHHHHHHHHHTTCSEEEEECCSS----------------CHHHHHHHHHHHHHHHTTTTCEEEEECTTC
T ss_pred eEEcCCCCHHHHHHHHHHHHHcCCcEEEEcCCCC----------------CHHHHHHHHHHHHHHhCCCCCeEEEeCCCC
Confidence 3445567899999999999999999999987642 24455677888887754 4566665555
Q ss_pred CCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHH
Q 020423 205 VDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNA 284 (326)
Q Consensus 205 ~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~ 284 (326)
|+ .++..+ +.+.+++.++ +|. . |..+++.++++.+.. .+||.+.-.+.+..++.+
T Consensus 221 w~----~~~A~~-~~~~L~~~~i-~iE----e--------------P~~~~~~~~~l~~~~-~iPIa~dE~~~~~~~~~~ 275 (391)
T 4e8g_A 221 LP----SRDALR-LSRECPEIPF-VLE----Q--------------PCNTLEEIAAIRGRV-QHGIYLDESGEDLSTVIR 275 (391)
T ss_dssp CC----HHHHHH-HHHHCTTSCE-EEE----S--------------CSSSHHHHHHHGGGC-CSCEEESTTCCSHHHHHH
T ss_pred CC----HHHHHH-HHHHHhhcCe-EEe----c--------------CCccHHHHHHHHhhC-CCCEEeCCCCCCHHHHHH
Confidence 54 344444 3456677888 762 1 112477777777664 899999999999999999
Q ss_pred HHHhC-CChhhhhHHHH
Q 020423 285 ALRKG-AHHVMVGRAAY 300 (326)
Q Consensus 285 ~l~~G-aD~V~iGRall 300 (326)
+++.| +|.|++--.-.
T Consensus 276 ~~~~~a~d~v~ik~~~~ 292 (391)
T 4e8g_A 276 AAGQGLCDGFGMKLTRI 292 (391)
T ss_dssp HHHTTCCSEEEEEHHHH
T ss_pred HHHcCCCCEEEeCcccc
Confidence 99965 89988755444
|
| >3ik4_A Mandelate racemase/muconate lactonizing protein; structural genomics, enolase, epimerase, PSI-2, protein STRU initiative; 2.10A {Herpetosiphon aurantiacus atcc 23779} | Back alignment and structure |
|---|
Probab=97.02 E-value=0.01 Score=55.79 Aligned_cols=130 Identities=13% Similarity=0.163 Sum_probs=91.5
Q ss_pred EEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC-CCcEEEEeccCCCC
Q 020423 129 LQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCRIGVDD 207 (326)
Q Consensus 129 vQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~-~~pv~vK~r~g~~~ 207 (326)
..+...+++++.+.++.+.+.||..+-+..|.. .++.-.+.+++||+.+ +.++.+....+|
T Consensus 137 ~~~~~~~~e~~~~~a~~~~~~G~~~iK~Kvg~~----------------~~~~d~~~v~avr~~~~~~~l~vDaN~~~-- 198 (365)
T 3ik4_A 137 MTITAGDEVHAAASAKAILARGIKSIKVKTAGV----------------DVAYDLARLRAIHQAAPTAPLIVDGNCGY-- 198 (365)
T ss_dssp EEECCSCHHHHHHHHHHHHHTTCCCEEEECCSS----------------CHHHHHHHHHHHHHHSSSCCEEEECTTCC--
T ss_pred EEecCCCHHHHHHHHHHHHHcCCCEEEEEeCCC----------------CHHHHHHHHHHHHHhCCCCeEEEECCCCC--
Confidence 345557899999999999999999999976421 2556677888888877 344544433444
Q ss_pred CccHHHHHHHHHHHh--hhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHH
Q 020423 208 HDSYNQLCDFIYKVS--SLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAA 285 (326)
Q Consensus 208 ~~~~~e~~~~ia~~l--e~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~ 285 (326)
+.++..++ .+.+ ++.++.+|. . ..++.+++.++++.++. .+||.+.-.+.+.+++.++
T Consensus 199 --~~~~A~~~-~~~L~~~~~~i~~iE----e------------P~~~~d~~~~~~l~~~~-~ipIa~dE~~~~~~~~~~~ 258 (365)
T 3ik4_A 199 --DVERALAF-CAACKAESIPMVLFE----Q------------PLPREDWAGMAQVTAQS-GFAVAADESARSAHDVLRI 258 (365)
T ss_dssp --CHHHHHHH-HHHHHHTTCCEEEEE----C------------CSCTTCHHHHHHHHHHS-SSCEEESTTCSSHHHHHHH
T ss_pred --CHHHHHHH-HHHHhhCCCCceEEE----C------------CCCcccHHHHHHHHhhC-CCCEEECCCCCCHHHHHHH
Confidence 34455553 4456 667777774 1 12233577777887765 8999999999999999999
Q ss_pred HHhC-CChhhhh
Q 020423 286 LRKG-AHHVMVG 296 (326)
Q Consensus 286 l~~G-aD~V~iG 296 (326)
++.| +|.|++=
T Consensus 259 i~~~a~d~v~ik 270 (365)
T 3ik4_A 259 AREGTASVINIK 270 (365)
T ss_dssp HHHTCCSEEEEC
T ss_pred HHhCCCCEEEEc
Confidence 9865 8887764
|
| >4a35_A Mitochondrial enolase superfamily member 1; isomerase; 1.74A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.02 E-value=0.018 Score=55.64 Aligned_cols=125 Identities=8% Similarity=-0.007 Sum_probs=89.5
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCC--CcEEEEeccCCCCCcc
Q 020423 133 GSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTN--VPVSVKCRIGVDDHDS 210 (326)
Q Consensus 133 g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~--~pv~vK~r~g~~~~~~ 210 (326)
+.+++++++.++.+.+.||..+-++.|. +++.-.+.+++||++++ .++.+....+|+
T Consensus 199 ~~~~e~~~~~a~~~~~~Gf~~~KlKvG~-----------------~~~~d~~~v~avR~a~G~~~~l~vDaN~~~~---- 257 (441)
T 4a35_A 199 GYSDDTLKQLCAQALKDGWTRFKVKVGA-----------------DLQDDMRRCQIIRDMIGPEKTLMMDANQRWD---- 257 (441)
T ss_dssp TCCHHHHHHHHHHHHHTTCCEEEEECSS-----------------CHHHHHHHHHHHHHHHCTTSEEEEECTTCCC----
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEcCCC-----------------CHHHHHHHHHHHHHHhCCCCeEEEECCCCCC----
Confidence 4589999999999999999999998643 24555677888888874 566666555553
Q ss_pred HHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhc--CCCceEEEeCCCCCHHHHHHHHHh
Q 020423 211 YNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRD--FPDLTFTLNGGINTVDEVNAALRK 288 (326)
Q Consensus 211 ~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~--~~~iPVIa~GgI~s~~da~~~l~~ 288 (326)
.++..+ +.+.+++.++.+|. . ..++.+++.++++.+. ..++||.+.-.+.+..++.++++.
T Consensus 258 ~~~A~~-~~~~L~~~~~~~iE----e------------P~~~~d~~~~~~l~~~l~~~~iPIa~gE~~~~~~~~~~~l~~ 320 (441)
T 4a35_A 258 VPEAVE-WMSKLAKFKPLWIE----E------------PTSPDDILGHATISKALVPLGIGIATGEQCHNRVIFKQLLQA 320 (441)
T ss_dssp HHHHHH-HHHHHGGGCCSEEE----C------------CSCTTCHHHHHHHHHHHGGGTCEEEECTTCCSHHHHHHHHHT
T ss_pred HHHHHH-HHHhhcccCccEEe----C------------CCCcccHHHHHHHHHhccCCCCCEEeCCccccHHHHHHHHHc
Confidence 344445 35567788888873 1 1223346666666654 137999999999999999999985
Q ss_pred C-CChhhh
Q 020423 289 G-AHHVMV 295 (326)
Q Consensus 289 G-aD~V~i 295 (326)
| +|.|++
T Consensus 321 ~a~div~~ 328 (441)
T 4a35_A 321 KALQFLQI 328 (441)
T ss_dssp TCCSEECC
T ss_pred CCCCEEEE
Confidence 4 887776
|
| >3m47_A Orotidine 5'-phosphate decarboxylase; orotidine 5'-monophosphate decarboxylase, mutant I218A, LYAS; 1.20A {Methanothermobacter thermautotrophicusdelta H} SCOP: c.1.2.3 PDB: 3li1_A 3m5z_A 3lty_A 3ltp_A* 3g18_A* 3g1d_A* 3g1f_A* 3g1h_A* 3g1a_A* 3lv6_A* 1klz_A* 3g1y_A 3g22_A* 3g24_A* 3p5z_A* 3siz_A* 3sy5_A* 1loq_A* 1lor_A* 1kly_A* ... | Back alignment and structure |
|---|
Probab=96.98 E-value=0.011 Score=51.93 Aligned_cols=153 Identities=13% Similarity=0.065 Sum_probs=85.4
Q ss_pred CCcEEEEec-CCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEec
Q 020423 124 QHPIVLQIG-GSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCR 202 (326)
Q Consensus 124 ~~piivQL~-g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r 202 (326)
+.++++-+. +..++....+++.+.++|+|.|.+|. |+| .+-+...++.+++. +..+.+=.+
T Consensus 64 g~~v~lD~Kl~DipnTv~~~~~~~~~~gad~vtvh~------------~~G-----~~~l~~~~~~~~~~-g~~v~vLt~ 125 (228)
T 3m47_A 64 GCRIIADFKVADIPETNEKICRATFKAGADAIIVHG------------FPG-----ADSVRACLNVAEEM-GREVFLLTE 125 (228)
T ss_dssp CCEEEEEEEECSCHHHHHHHHHHHHHTTCSEEEEES------------TTC-----HHHHHHHHHHHHHH-TCEEEEECC
T ss_pred CCeEEEEEeecccHhHHHHHHHHHHhCCCCEEEEec------------cCC-----HHHHHHHHHHHHhc-CCCeEEEEe
Confidence 566776664 34466666777778889999999985 222 23444555555432 333444222
Q ss_pred cCCCCC-ccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCC-ceEEEeCCCCCH-
Q 020423 203 IGVDDH-DSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPD-LTFTLNGGINTV- 279 (326)
Q Consensus 203 ~g~~~~-~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~-iPVIa~GgI~s~- 279 (326)
....+. +...+..+.++++..+.|+|.+.++... .+.+.++++..++ .++ ..+||...
T Consensus 126 ~s~~~~~~~~~~~~~~~a~~a~~~G~~GvV~~at~------------------~~e~~~ir~~~~~~~~i-v~PGI~~~g 186 (228)
T 3m47_A 126 MSHPGAEMFIQGAADEIARMGVDLGVKNYVGPSTR------------------PERLSRLREIIGQDSFL-ISPGVGAQG 186 (228)
T ss_dssp CCSGGGGTTHHHHHHHHHHHHHHTTCCEEECCSSC------------------HHHHHHHHHHHCSSSEE-EECC-----
T ss_pred CCCccHHHHHHHHHHHHHHHHHHhCCcEEEECCCC------------------hHHHHHHHHhcCCCCEE-EecCcCcCC
Confidence 221111 1223444556667778999998765411 2334445544433 555 77787532
Q ss_pred HHHHHHHHhCCChhhhhHHHHhCCc--hhHHhHHHhh
Q 020423 280 DEVNAALRKGAHHVMVGRAAYQNPW--YTLGHVDTAI 314 (326)
Q Consensus 280 ~da~~~l~~GaD~V~iGRall~dP~--l~~~~i~~~~ 314 (326)
.+. ++++.|+|.+.+||+++..++ -..+.+.+.+
T Consensus 187 ~~p-~~~~aGad~iVvGr~I~~a~dp~~a~~~~~~~~ 222 (228)
T 3m47_A 187 GDP-GETLRFADAIIVGRSIYLADNPAAAAAGAIESI 222 (228)
T ss_dssp -----CGGGTCSEEEECHHHHTSSCHHHHHHHHHHHC
T ss_pred CCH-hHHHcCCCEEEECHHHhCCCCHHHHHHHHHHHH
Confidence 245 777899999999999997554 3334444433
|
| >4h3d_A 3-dehydroquinate dehydratase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, aldolase class I; HET: PGE SHL; 1.95A {Clostridium difficile} PDB: 3js3_A* | Back alignment and structure |
|---|
Probab=96.98 E-value=0.054 Score=48.41 Aligned_cols=100 Identities=17% Similarity=0.144 Sum_probs=70.8
Q ss_pred CCCc-EEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC-CCcEEEE
Q 020423 123 EQHP-IVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVK 200 (326)
Q Consensus 123 ~~~p-iivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~-~~pv~vK 200 (326)
+|.| +++.|.+.+.++..+.++.+.+.|+|.||+-+..-.. ..+.+.+.+.+..+|+.. +.|+.+-
T Consensus 17 ~g~PkIcvpl~~~t~~e~l~~a~~~~~~~aD~vElR~D~l~~------------~~~~~~v~~~l~~lr~~~~~lPiI~T 84 (258)
T 4h3d_A 17 EGRPKICVPIIGKNKKDIIKEAKELKDACLDIIEWRVDFFEN------------VENIKEVKEVLYELRSYIHDIPLLFT 84 (258)
T ss_dssp SSSCEEEEEECCSSHHHHHHHHHHHTTSSCSEEEEEGGGCTT------------TTCHHHHHHHHHHHHHHCTTSCEEEE
T ss_pred CCCCEEEEEeCCCCHHHHHHHHHHHhhcCCCEEEEeeccccc------------cCCHHHHHHHHHHHHHhcCCCCEEEE
Confidence 3444 8899999999999999999999999999996532210 135788999999999876 7999999
Q ss_pred eccCCCCC---ccHHHHHHHHHHHhhhCCccEEEEec
Q 020423 201 CRIGVDDH---DSYNQLCDFIYKVSSLSPTRHFIIHS 234 (326)
Q Consensus 201 ~r~g~~~~---~~~~e~~~~ia~~le~~Gvd~I~v~~ 234 (326)
+|..++.. .+-++-.+.+..+.+..++|+|+|.-
T Consensus 85 ~Rt~~EGG~~~~~~~~~~~ll~~~~~~~~~d~iDvEl 121 (258)
T 4h3d_A 85 FRSVVEGGEKLISRDYYTTLNKEISNTGLVDLIDVEL 121 (258)
T ss_dssp CCCGGGTCSCCCCHHHHHHHHHHHHHTTCCSEEEEEG
T ss_pred EechhhCCCCCCCHHHHHHHHHHHHhcCCchhhHHhh
Confidence 98744322 12223333334444444599999863
|
| >1q6o_A Humps, 3-keto-L-gulonate 6-phosphate decarboxylase, D-; beta barrel, lyase; HET: LG6; 1.20A {Escherichia coli} SCOP: c.1.2.3 PDB: 1kw1_A* 1q6l_A* 1kv8_A* 1q6q_A* 1q6r_A* 1xbv_A* 1so5_A* 1so4_A* 1xby_A* 1so3_A* 1so6_A* 1xbz_A* 1xbx_A* | Back alignment and structure |
|---|
Probab=96.97 E-value=0.0038 Score=54.19 Aligned_cols=141 Identities=14% Similarity=0.100 Sum_probs=83.5
Q ss_pred CCcEEEEec-CCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEec
Q 020423 124 QHPIVLQIG-GSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCR 202 (326)
Q Consensus 124 ~~piivQL~-g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r 202 (326)
+.++++-+. +..++.+.+ .+.++|+|.|.+|... | .+-+.+.++.+++ .+.++.+++-
T Consensus 56 ~~~v~lD~kl~dip~t~~~---~~~~~Gad~itvh~~~-----------g------~~~l~~~~~~~~~-~g~~~~~~ll 114 (216)
T 1q6o_A 56 HKIVLADAKIADAGKILSR---MCFEANADWVTVICCA-----------D------INTAKGALDVAKE-FNGDVQIELT 114 (216)
T ss_dssp TSEEEEEEEECSCHHHHHH---HHHHTTCSEEEEETTS-----------C------HHHHHHHHHHHHH-TTCEEEEEEC
T ss_pred CCeEEEEEEecccHHHHHH---HHHhCCCCEEEEeccC-----------C------HHHHHHHHHHHHH-cCCCceeeee
Confidence 345554432 245666655 5778999999999521 1 2234566666665 3677666554
Q ss_pred cCCCCCccHHHHHHHHHHHhhhCCccEEEEecCC-cccCCCCcCCcCCCCCccHHHHHHHHhcCC-CceEEEeCCCCCHH
Q 020423 203 IGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRK-ALLNGISPAENRTIPPLKYEYYYALLRDFP-DLTFTLNGGINTVD 280 (326)
Q Consensus 203 ~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~-~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~-~iPVIa~GgI~s~~ 280 (326)
.... .+ . .+ .+++.|.+.+.+|-.. ....|..+ ..+.+..+++... ++||++.|||+ ++
T Consensus 115 ~~~t--~~--~-~~----~l~~~~~~~~vl~~a~~~~~~G~~g---------~~~~i~~lr~~~~~~~~i~v~GGI~-~~ 175 (216)
T 1q6o_A 115 GYWT--WE--Q-AQ----QWRDAGIGQVVYHRSRDAQAAGVAW---------GEADITAIKRLSDMGFKVTVTGGLA-LE 175 (216)
T ss_dssp SCCC--HH--H-HH----HHHHTTCCEEEEECCHHHHHTTCCC---------CHHHHHHHHHHHHTTCEEEEESSCC-GG
T ss_pred eCCC--hh--h-HH----HHHhcCcHHHHHHHHHHHHhcCCCC---------CHHHHHHHHHhcCCCCcEEEECCcC-hh
Confidence 2222 11 1 11 2234577777665321 11112211 1233333333222 68999999997 78
Q ss_pred HHHHHHHhCCChhhhhHHHHhCCc
Q 020423 281 EVNAALRKGAHHVMVGRAAYQNPW 304 (326)
Q Consensus 281 da~~~l~~GaD~V~iGRall~dP~ 304 (326)
.+.++++.|||.+.+||+++..++
T Consensus 176 ~~~~~~~aGad~ivvG~~I~~a~d 199 (216)
T 1q6o_A 176 DLPLFKGIPIHVFIAGRSIRDAAS 199 (216)
T ss_dssp GGGGGTTSCCSEEEESHHHHTSSC
T ss_pred hHHHHHHcCCCEEEEeehhcCCCC
Confidence 899999999999999999997544
|
| >4dxk_A Mandelate racemase / muconate lactonizing enzyme protein; enolase, mandelate racemase subgroup, enzyme function initia EFI; 1.25A {Agrobacterium tumefaciens} PDB: 4dx3_A 2pod_A | Back alignment and structure |
|---|
Probab=96.96 E-value=0.0052 Score=58.60 Aligned_cols=130 Identities=12% Similarity=-0.046 Sum_probs=86.5
Q ss_pred HHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccc-cCCHHHHHHHHHHHHhcCC--CcEEEEeccCCCCCccHHHHHH
Q 020423 140 AKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSL-MLDPKFVGEAMSVIAANTN--VPVSVKCRIGVDDHDSYNQLCD 216 (326)
Q Consensus 140 ~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl-~~r~~~l~eiv~avr~~~~--~pv~vK~r~g~~~~~~~~e~~~ 216 (326)
.+.++.+.+.||..+-++.+.|... . .+++.. ..+++...+.+++||++++ +++.+....+| +.++..+
T Consensus 157 ~~~a~~~~~~G~~~~Kik~g~~~~~--~--~~~g~~~~~~~~~d~~~v~avR~a~g~~~~l~vDaN~~~----~~~~A~~ 228 (400)
T 4dxk_A 157 DELAHSLLEDGITAMKIWPFDAAAE--K--TRGQYISMPDLKSALEPFEKIRKAVGDKMDIMVEFHSMW----QLLPAMQ 228 (400)
T ss_dssp HHHHHHHHHTTCCEEEECTTHHHHH--H--HTTSCCCHHHHHHHHHHHHHHHHHHGGGSEEEEECTTCB----CHHHHHH
T ss_pred HHHHHHHHHhCCCEEEEcCCCcccc--c--cccCcCCHHHHHHHHHHHHHHHHHcCCCceEEEECCCCC----CHHHHHH
Confidence 4556677889999999976522100 0 001111 1236677889999999874 56666655444 3455555
Q ss_pred HHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhC-CChhhh
Q 020423 217 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKG-AHHVMV 295 (326)
Q Consensus 217 ~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~G-aD~V~i 295 (326)
+.+.+++.|+++|.- + .++.+++.++++++.. ++||.+...+.+++++.++++.| +|.|++
T Consensus 229 -~~~~L~~~~i~~iEe----P------------~~~~~~~~~~~l~~~~-~iPIa~dE~~~~~~~~~~~l~~~a~d~v~~ 290 (400)
T 4dxk_A 229 -IAKALTPYQTFWHED----P------------IKMDSLSSLTRYAAVS-PAPISASETLGSRWAFRDLLETGAAGVVML 290 (400)
T ss_dssp -HHHHTGGGCCSEEEC----C------------BCTTSGGGHHHHHHHC-SSCEEECTTCCHHHHHHHHHHTTCCCEEEE
T ss_pred -HHHHHhhcCCCEEEc----C------------CCcccHHHHHHHHHhC-CCCEEecCCcCCHHHHHHHHHcCCCCEEEe
Confidence 456778899999861 1 1122355566666664 89999999999999999999976 888876
|
| >3ru6_A Orotidine 5'-phosphate decarboxylase; structural genomics, center for structural genomics of infec diseases (csgid), TIM-barrel; 1.80A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=96.94 E-value=0.029 Score=51.31 Aligned_cols=154 Identities=16% Similarity=0.163 Sum_probs=90.7
Q ss_pred CCcEEEEec-CCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEec
Q 020423 124 QHPIVLQIG-GSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCR 202 (326)
Q Consensus 124 ~~piivQL~-g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r 202 (326)
+.++++-+- +.-+.....+++.+.++|+|.+.+|. ||| .+-+...++..++.-..|..+-+.
T Consensus 76 g~~IflDlKl~DIpnTv~~av~~~a~lGaD~vTVHa------------~~G-----~~~m~aa~e~a~~~~~~~~llaVt 138 (303)
T 3ru6_A 76 DFKIFLDLKFHDIPNTMADACEEVSKLGVDMINIHA------------SAG-----KIAIQEVMTRLSKFSKRPLVLAVS 138 (303)
T ss_dssp CCEEEEEEEECSCHHHHHHHHHHHHTTTCSEEEEEG------------GGC-----HHHHHHHHHHHTTSSSCCEEEEEC
T ss_pred CCCEEEEeeeccCchhHHHHHHHHHhcCCCEEEEec------------cCC-----HHHHHHHHHHHHhcCCCceEEEEE
Confidence 667777774 33456666777788899999999985 232 344455555543332233333221
Q ss_pred c--CCCCC-------ccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEe
Q 020423 203 I--GVDDH-------DSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLN 273 (326)
Q Consensus 203 ~--g~~~~-------~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~ 273 (326)
. +.+.. .++.+....+++...+.|+|.++.+..+ +..+++..++-.++.+
T Consensus 139 vLTS~s~~~l~~l~~~~~~e~V~~lA~~a~~~G~dGvV~s~~E---------------------~~~IR~~~~~~fl~VT 197 (303)
T 3ru6_A 139 ALTSFDEENFFSIYRQKIEEAVINFSKISYENGLDGMVCSVFE---------------------SKKIKEHTSSNFLTLT 197 (303)
T ss_dssp SCTTCCHHHHHHHHSSCHHHHHHHHHHHHHHTTCSEEECCTTT---------------------HHHHHHHSCTTSEEEE
T ss_pred EecCCCHHHHHHHHcCCHHHHHHHHHHHHHHcCCCEEEECHHH---------------------HHHHHHhCCCccEEEC
Confidence 1 11110 1223333335556667999998764311 2344444545568889
Q ss_pred CCCCCHH----------HHHHHHHhCCChhhhhHHHHhCCc--hhHHhHHHhhh
Q 020423 274 GGINTVD----------EVNAALRKGAHHVMVGRAAYQNPW--YTLGHVDTAIY 315 (326)
Q Consensus 274 GgI~s~~----------da~~~l~~GaD~V~iGRall~dP~--l~~~~i~~~~~ 315 (326)
+||+-.. ++.++++.|||.+.+||++...++ -..+.+.+.+.
T Consensus 198 PGIr~qG~~~~DQ~Rv~t~~~a~~aGAd~iVvGr~I~~a~dp~~a~~~i~~~i~ 251 (303)
T 3ru6_A 198 PGIRPFGETNDDQKRVANLAMARENLSDYIVVGRPIYKNENPRAVCEKILNKIH 251 (303)
T ss_dssp CCCCTTC--------CCSHHHHHHTTCSEEEECHHHHTSSCHHHHHHHHHHHHC
T ss_pred CCcCcccCCcccccccCCHHHHHHcCCCEEEEChHHhCCCCHHHHHHHHHHHHH
Confidence 9997321 456778899999999999997554 33444544443
|
| >3iv3_A Tagatose 1,6-diphosphate aldolase 2; TIM barrel, phosphate binding, tagatose-bisphosphate aldolas tagatose-1,6-bisphosphate aldolase; HET: MSE; 1.80A {Streptococcus mutans} PDB: 3mhf_A 3mhg_A 3jrk_A 3kao_A* 3myp_A 3myo_A | Back alignment and structure |
|---|
Probab=96.91 E-value=0.018 Score=53.37 Aligned_cols=147 Identities=14% Similarity=0.170 Sum_probs=79.6
Q ss_pred HHHHHHHCCCCEEEecCCCCCCcccCCCCcccccc-----CCHHHHHHHHHHHHhcCCCcEEEEe--cc-CCCCCcc--H
Q 020423 142 ATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLM-----LDPKFVGEAMSVIAANTNVPVSVKC--RI-GVDDHDS--Y 211 (326)
Q Consensus 142 aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~-----~r~~~l~eiv~avr~~~~~pv~vK~--r~-g~~~~~~--~ 211 (326)
.++++++.|+|+|-+++- ||..-+ .+.+++.++.++.+ ..|+|+.+-+ .. +..+..+ .
T Consensus 115 sve~a~~~GADAVk~lv~-----------~g~d~~~e~~~~q~~~l~rv~~ec~-~~GiPlllEil~y~~~~~~~~~~~~ 182 (332)
T 3iv3_A 115 SIKRLKEAGADAVKFLLY-----------YDVDGDPQVNVQKQAYIERIGSECQ-AEDIPFFLEILTYDETISNNSSVEF 182 (332)
T ss_dssp CHHHHHHTTCSEEEEEEE-----------ECTTSCHHHHHHHHHHHHHHHHHHH-HHTCCEEEEEEECBTTBSCTTSHHH
T ss_pred CHHHHHHcCCCEEEEEEE-----------cCCCchHHHHHHHHHHHHHHHHHHH-HcCCceEEEEeccCCCCCCCcchhh
Confidence 367899999999999862 221100 12344555555542 3489988754 22 1112111 1
Q ss_pred ----HHHHHHHHHHh--hhCCccEEEEec-CCc-ccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEE-EeCCCCCHHHH
Q 020423 212 ----NQLCDFIYKVS--SLSPTRHFIIHS-RKA-LLNGISPAENRTIPPLKYEYYYALLRDFPDLTFT-LNGGINTVDEV 282 (326)
Q Consensus 212 ----~e~~~~ia~~l--e~~Gvd~I~v~~-~~~-~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVI-a~GgI~s~~da 282 (326)
.+.+...++.+ .+.|+|.+-+.- ++. .-.|+...+.-+......+.++++.+. ..+|+| .+||+ +.++.
T Consensus 183 a~~~p~~V~~a~R~~~~~elGaDv~Kve~p~~~~~v~g~~~~~~~y~~~ea~~~f~~~~~a-~~~P~v~lsgG~-~~~~f 260 (332)
T 3iv3_A 183 AKVKVHKVNDAMKVFSAERFGIDVLKVEVPVNMVYVEGFAEGEVVYSKEEAAQAFREQEAS-TDLPYIYLSAGV-SAELF 260 (332)
T ss_dssp HTTHHHHHHHHHHHHTSGGGCCSEEEECCSSCGGGBTTTCSSCCCBCHHHHHHHHHHHHHT-CSSCEEEECTTC-CHHHH
T ss_pred hccCHHHHHHHHHHHhhcCcCCcEEEEecCCChhhhcccccccccccHHHHHHHHHHHHhc-CCCCEEEECCCC-CHHHH
Confidence 22333455666 467999998852 111 111221110000000011235555544 489965 79998 45554
Q ss_pred HH----HHHhCC--ChhhhhHHHHhC
Q 020423 283 NA----ALRKGA--HHVMVGRAAYQN 302 (326)
Q Consensus 283 ~~----~l~~Ga--D~V~iGRall~d 302 (326)
.+ +++.|| .+|.+||+...+
T Consensus 261 l~~v~~A~~aGa~f~Gv~~GRnvwq~ 286 (332)
T 3iv3_A 261 QETLVFAHKAGAKFNGVLCGRATWAG 286 (332)
T ss_dssp HHHHHHHHHHTCCCCEEEECHHHHTT
T ss_pred HHHHHHHHHcCCCcceEEeeHHHHHh
Confidence 44 445899 999999999887
|
| >1mxs_A KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate aldolase, sulfate, beta-BA lyase; 2.20A {Pseudomonas putida} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=96.90 E-value=0.0029 Score=55.58 Aligned_cols=46 Identities=17% Similarity=0.161 Sum_probs=38.8
Q ss_pred HHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHH-hCCChhhhhHHHHhC
Q 020423 255 YEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQN 302 (326)
Q Consensus 255 ~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~-~GaD~V~iGRall~d 302 (326)
.++++++.+..+++|+++.||| +++.+.++++ .|+++|. |+++...
T Consensus 154 ~~~lk~i~~~~~~ipvvaiGGI-~~~N~~~~l~~~Ga~~v~-gSai~~~ 200 (225)
T 1mxs_A 154 VAAIKAFGGPFGDIRFCPTGGV-NPANVRNYMALPNVMCVG-TTWMLDS 200 (225)
T ss_dssp HHHHHHHHTTTTTCEEEEBSSC-CTTTHHHHHHSTTBCCEE-ECTTSCH
T ss_pred HHHHHHHHhhCCCCeEEEECCC-CHHHHHHHHhccCCEEEE-EchhcCc
Confidence 4667777766668999999999 7889999999 7999999 9888753
|
| >1zlp_A PSR132, petal death protein; TIM-barrel, helix swapping,2-ethyl-3-methylmalate lyase, 2-P methylmalate lyase, lyase/PEP mutase superfamily; 2.70A {Dianthus caryophyllus} | Back alignment and structure |
|---|
Probab=96.88 E-value=0.0091 Score=55.05 Aligned_cols=200 Identities=7% Similarity=-0.025 Sum_probs=114.7
Q ss_pred CCChHHHHHHHHHcCCCcEEEecceee--cccccccc---chhhhhh----c-CCC-CCcEEEEe---cCCCHHHHHHHH
Q 020423 78 DWTDNHYRTLARLISKHAWLYTEMLAA--ETIIYQQG---NLDRFLA----F-SPE-QHPIVLQI---GGSNLDNLAKAT 143 (326)
Q Consensus 78 ~~s~~~~r~~~~~~Gg~gli~te~~~~--~~~~~~~~---~~~~~~~----~-~~~-~~piivQL---~g~~~~~f~~aA 143 (326)
+.=|.....++.+.| +..+++..... ..+.+.+. ..+..+. + ... +.|+++-+ +| ++++..+.+
T Consensus 45 ~ayD~~sA~i~e~aG-fdai~vs~~~~a~~~lG~pD~~~vt~~em~~~~~~I~r~~~~~PviaD~d~Gyg-~~~~v~~tv 122 (318)
T 1zlp_A 45 GVQDALSAAVVEKTG-FHAAFVSGYSVSAAMLGLPDFGLLTTTEVVEATRRITAAAPNLCVVVDGDTGGG-GPLNVQRFI 122 (318)
T ss_dssp EECSHHHHHHHHHTT-CSEEEECHHHHHHHHHCCCSSSCSCHHHHHHHHHHHHHHSSSSEEEEECTTCSS-SHHHHHHHH
T ss_pred cCCCHHHHHHHHHcC-CCEEEECcHHHhhHhcCCCCCCCCCHHHHHHHHHHHHhhccCCCEEEeCCCCCC-CHHHHHHHH
Confidence 455666666666665 77777765321 11222221 1122111 1 122 67888887 34 788999999
Q ss_pred HHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC-CCcEEEEeccCCCCCccHHHHHHHHHHHh
Q 020423 144 ELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFIYKVS 222 (326)
Q Consensus 144 ~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~-~~pv~vK~r~g~~~~~~~~e~~~~ia~~l 222 (326)
+++.++|+++|.|--+... .+.++.||.-+-..+...+-|++++++. +.++.+--|........+++.++. ++.+
T Consensus 123 ~~l~~aGaagv~iED~~~~---k~cgH~~gk~L~p~~e~~~rI~Aa~~A~~~~~~~I~ARtda~a~~gl~~ai~R-a~Ay 198 (318)
T 1zlp_A 123 RELISAGAKGVFLEDQVWP---KKCGHMRGKAVVPAEEHALKIAAAREAIGDSDFFLVARTDARAPHGLEEGIRR-ANLY 198 (318)
T ss_dssp HHHHHTTCCEEEEECBCSS---CCCSSSSCCCBCCHHHHHHHHHHHHHHHTTSCCEEEEEECTHHHHHHHHHHHH-HHHH
T ss_pred HHHHHcCCcEEEECCCCCC---ccccCCCCCccCCHHHHHHHHHHHHHhcccCCcEEEEeeHHhhhcCHHHHHHH-HHHH
Confidence 9999999999999765422 3345555543344444444455554442 333444334421111123455554 3566
Q ss_pred hhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEe---CCCCCHHHHHHHHHhCCChhhhhHHH
Q 020423 223 SLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLN---GGINTVDEVNAALRKGAHHVMVGRAA 299 (326)
Q Consensus 223 e~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~---GgI~s~~da~~~l~~GaD~V~iGRal 299 (326)
+++|+|.|.+++.. ..+.++++.+.. ++|+.+| ||-...-+..++-+.|+..|..+-.+
T Consensus 199 ~eAGAd~i~~e~~~-----------------~~e~~~~i~~~l-~~P~lan~~~~g~~~~~~~~eL~~lGv~~v~~~~~~ 260 (318)
T 1zlp_A 199 KEAGADATFVEAPA-----------------NVDELKEVSAKT-KGLRIANMIEGGKTPLHTPEEFKEMGFHLIAHSLTA 260 (318)
T ss_dssp HHTTCSEEEECCCC-----------------SHHHHHHHHHHS-CSEEEEEECTTSSSCCCCHHHHHHHTCCEEEECSHH
T ss_pred HHcCCCEEEEcCCC-----------------CHHHHHHHHHhc-CCCEEEEeccCCCCCCCCHHHHHHcCCeEEEEchHH
Confidence 78999999987531 145667777775 8999655 33211223556667899998887766
Q ss_pred Hh
Q 020423 300 YQ 301 (326)
Q Consensus 300 l~ 301 (326)
+.
T Consensus 261 ~r 262 (318)
T 1zlp_A 261 VY 262 (318)
T ss_dssp HH
T ss_pred HH
Confidence 53
|
| >1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural genomics, epimerase, PSI, structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5 | Back alignment and structure |
|---|
Probab=96.88 E-value=0.006 Score=53.41 Aligned_cols=132 Identities=13% Similarity=0.053 Sum_probs=84.5
Q ss_pred CCCCcEEEEecCCC----HH--HHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCC
Q 020423 122 PEQHPIVLQIGGSN----LD--NLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNV 195 (326)
Q Consensus 122 ~~~~piivQL~g~~----~~--~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~ 195 (326)
+.+-.+++|..... ++ +..+.++.+.++|+++++++ + + +.++.+|+.++.
T Consensus 15 ~~~~~~~~~~~~~~p~~~~~~~~~~~~a~~~~~~G~~~i~~~--------------~------~----~~i~~i~~~~~~ 70 (234)
T 1yxy_A 15 KGGIIVSCQALPGEPLYSETGGIMPLMAKAAQEAGAVGIRAN--------------S------V----RDIKEIQAITDL 70 (234)
T ss_dssp TTSCEEECCCCTTSTTCCTTCCSHHHHHHHHHHHTCSEEEEE--------------S------H----HHHHHHHTTCCS
T ss_pred hCCEEEEeeCCCCCCCcCCccchHHHHHHHHHHCCCcEeecC--------------C------H----HHHHHHHHhCCC
Confidence 34556667765533 67 78889999999999999874 1 2 347788888899
Q ss_pred cEEEEeccCCCCC-----ccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceE
Q 020423 196 PVSVKCRIGVDDH-----DSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTF 270 (326)
Q Consensus 196 pv~vK~r~g~~~~-----~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPV 270 (326)
|+.--++.++++. ...++ +. .+.++|+|.|++|....... . .....+.+..+++..++++|
T Consensus 71 p~i~~~~~~~~~~~~~i~~~~~~----i~-~~~~~Gad~V~l~~~~~~~~-----~----~~~~~~~i~~i~~~~~~~~v 136 (234)
T 1yxy_A 71 PIIGIIKKDYPPQEPFITATMTE----VD-QLAALNIAVIAMDCTKRDRH-----D----GLDIASFIRQVKEKYPNQLL 136 (234)
T ss_dssp CEEEECBCCCTTSCCCBSCSHHH----HH-HHHTTTCSEEEEECCSSCCT-----T----CCCHHHHHHHHHHHCTTCEE
T ss_pred CEEeeEcCCCCccccccCChHHH----HH-HHHHcCCCEEEEcccccCCC-----C----CccHHHHHHHHHHhCCCCeE
Confidence 9832223222111 12222 22 23469999999986432100 0 00124566677666556776
Q ss_pred EEeCCCCCHHHHHHHHHhCCChh
Q 020423 271 TLNGGINTVDEVNAALRKGAHHV 293 (326)
Q Consensus 271 Ia~GgI~s~~da~~~l~~GaD~V 293 (326)
+. ++.+++++..+.+.|+|.|
T Consensus 137 ~~--~~~t~~ea~~a~~~Gad~i 157 (234)
T 1yxy_A 137 MA--DISTFDEGLVAHQAGIDFV 157 (234)
T ss_dssp EE--ECSSHHHHHHHHHTTCSEE
T ss_pred EE--eCCCHHHHHHHHHcCCCEE
Confidence 55 6789999999999999999
|
| >3fcp_A L-Ala-D/L-Glu epimerase, A muconate lactonizing enzyme; structural genomics, nysgrc,target 9450E, PSI-2; 1.80A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=96.82 E-value=0.028 Score=53.02 Aligned_cols=136 Identities=8% Similarity=0.007 Sum_probs=89.0
Q ss_pred EecCCCHHHHHHHHHHH-HHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCC--CcEEEEeccCCC
Q 020423 130 QIGGSNLDNLAKATELA-NAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTN--VPVSVKCRIGVD 206 (326)
Q Consensus 130 QL~g~~~~~f~~aA~~a-~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~--~pv~vK~r~g~~ 206 (326)
.+...++++..+.++.. .+.||..+-+..|.. .++.-.+.+++||+.++ .++.+....+|+
T Consensus 142 t~~~~~~~~~~~~~~~~~~~~G~~~~KiKvg~~----------------~~~~d~~~v~avR~a~g~~~~l~vDaN~~~~ 205 (381)
T 3fcp_A 142 TLASGDTAKDIAEGEKLLAEGRHRAFKLKIGAR----------------ELATDLRHTRAIVEALGDRASIRVDVNQAWD 205 (381)
T ss_dssp EECSSCHHHHHHHHHHHTC----CEEEEECCSS----------------CHHHHHHHHHHHHHHTCTTCEEEEECTTCBC
T ss_pred EecCCChHHHHHHHHHHHHhCCCCEEEEecCCC----------------ChHHHHHHHHHHHHHcCCCCeEEEECCCCCC
Confidence 33334566555444444 446999999976531 24555778899999885 566666555553
Q ss_pred CCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHH
Q 020423 207 DHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAAL 286 (326)
Q Consensus 207 ~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l 286 (326)
.++..+ +.+.+++.|+.+|. . ..++.+++.++++.+.. ++||.+...+.+..++.+++
T Consensus 206 ----~~~A~~-~~~~l~~~~i~~iE----e------------P~~~~d~~~~~~l~~~~-~ipIa~dE~~~~~~~~~~~~ 263 (381)
T 3fcp_A 206 ----AATGAK-GCRELAAMGVDLIE----Q------------PVSAHDNAALVRLSQQI-ETAILADEAVATAYDGYQLA 263 (381)
T ss_dssp ----HHHHHH-HHHHHHHTTCSEEE----C------------CBCTTCHHHHHHHHHHS-SSEEEESTTCCSHHHHHHHH
T ss_pred ----HHHHHH-HHHHHhhcCcccee----C------------CCCcccHHHHHHHHHhC-CCCEEECCCcCCHHHHHHHH
Confidence 344444 34566788998884 1 12334577788887765 89999999999999999999
Q ss_pred HhC-CChhhhhHHHHhCC
Q 020423 287 RKG-AHHVMVGRAAYQNP 303 (326)
Q Consensus 287 ~~G-aD~V~iGRall~dP 303 (326)
+.+ +|.|++=-.-....
T Consensus 264 ~~~a~d~v~~k~~~~GGi 281 (381)
T 3fcp_A 264 QQGFTGAYALKIAKAGGP 281 (381)
T ss_dssp HTTCCSEEEECHHHHTST
T ss_pred HcCCCCEEEecccccCCH
Confidence 954 99988865554443
|
| >3o1n_A 3-dehydroquinate dehydratase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, lyase; 1.03A {Salmonella enterica subsp} PDB: 3s42_A 3l2i_A* 3lb0_A 4guf_A 4gug_A* 4guh_A* 3nnt_A* 4guj_A* 3m7w_A 3oex_A 4gfs_A* 4gui_A* 1gqn_A 1l9w_A* 1qfe_A* | Back alignment and structure |
|---|
Probab=96.82 E-value=0.075 Score=47.96 Aligned_cols=97 Identities=12% Similarity=0.093 Sum_probs=68.8
Q ss_pred CcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC-CCcEEEEecc
Q 020423 125 HPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCRI 203 (326)
Q Consensus 125 ~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~-~~pv~vK~r~ 203 (326)
..+++.|.+.+.++....++.+.+.|+|.||+-...-.. ....+.+.+.+..+|+.. +.|+.+-+|.
T Consensus 40 p~i~v~l~~~~~~e~~~~~~~~~~~gaD~VElRvD~l~~------------~~~~~~v~~~l~~lr~~~~~~PiI~T~Rt 107 (276)
T 3o1n_A 40 PKIIVSLMGKTITDVKSEALAYREADFDILEWRVDHFAN------------VTTAESVLEAAGAIREIITDKPLLFTFRS 107 (276)
T ss_dssp CEEEEEECCSSHHHHHHHHHHHTTSCCSEEEEEGGGCTT------------TTCHHHHHHHHHHHHHHCCSSCEEEECCB
T ss_pred cEEEEEeCCCCHHHHHHHHHHHhhCCCCEEEEEeccccc------------cCcHHHHHHHHHHHHHhcCCCCEEEEEEE
Confidence 457899999999999999999998999999996532110 024578899999999987 8999998887
Q ss_pred CCCCC---ccHHHHHHHHHHHhhhCC-ccEEEEec
Q 020423 204 GVDDH---DSYNQLCDFIYKVSSLSP-TRHFIIHS 234 (326)
Q Consensus 204 g~~~~---~~~~e~~~~ia~~le~~G-vd~I~v~~ 234 (326)
.++.. .+-++-.+.+...+ +.| +|+|+|.-
T Consensus 108 ~~eGG~~~~~~~~~~~ll~~~l-~~g~~dyIDvEl 141 (276)
T 3o1n_A 108 AKEGGEQALTTGQYIDLNRAAV-DSGLVDMIDLEL 141 (276)
T ss_dssp GGGTCSBCCCHHHHHHHHHHHH-HHTCCSEEEEEG
T ss_pred hhhCCCCCCCHHHHHHHHHHHH-hcCCCCEEEEEC
Confidence 43221 12233334334444 357 99999964
|
| >2hjp_A Phosphonopyruvate hydrolase; phosporus-Ca cleavage, PEP mutase/isocitrate lyase superfamily; HET: XYS PPR; 1.90A {Variovorax SP} PDB: 2dua_A* 2hrw_A | Back alignment and structure |
|---|
Probab=96.78 E-value=0.029 Score=51.02 Aligned_cols=197 Identities=13% Similarity=0.052 Sum_probs=110.8
Q ss_pred CCChHHHHHHHHHcCCCcEEEecc--eeecccccccc---chhhhhh-----cCCCCCcEEEEe---cCCCHHHHHHHHH
Q 020423 78 DWTDNHYRTLARLISKHAWLYTEM--LAAETIIYQQG---NLDRFLA-----FSPEQHPIVLQI---GGSNLDNLAKATE 144 (326)
Q Consensus 78 ~~s~~~~r~~~~~~Gg~gli~te~--~~~~~~~~~~~---~~~~~~~-----~~~~~~piivQL---~g~~~~~f~~aA~ 144 (326)
+.-|.....++.+.| +..+++.. +... +.+.+. ..+..+. ....+.|+++-+ +| ++++..+.++
T Consensus 21 ~a~D~~sA~~~~~aG-~~ai~vs~~~~a~~-~G~pD~~~vt~~em~~~~~~I~~~~~~PviaD~d~Gyg-~~~~~~~~v~ 97 (290)
T 2hjp_A 21 AAHNPLVAKLAEQAG-FGGIWGSGFELSAS-YAVPDANILSMSTHLEMMRAIASTVSIPLIADIDTGFG-NAVNVHYVVP 97 (290)
T ss_dssp ECSSHHHHHHHHHHT-CSEEEECHHHHHHH-TTSCTTTCSCHHHHHHHHHHHHTTCSSCEEEECTTTTS-SHHHHHHHHH
T ss_pred cCCCHHHHHHHHHcC-CCEEEEChHHHHHh-CCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEECCCCCC-CHHHHHHHHH
Confidence 445666666666665 77777764 2222 332221 1122211 234567888776 24 7889999999
Q ss_pred HHHHCCCCEEEecCCCCCCcccCCCCcc--ccccCCHHHHHHHHHHHHhcC-CCcEEEEeccCCC-CCccHHHHHHHHHH
Q 020423 145 LANAYNYDEINLNCGCPSPKVAGHGCFG--VSLMLDPKFVGEAMSVIAANT-NVPVSVKCRIGVD-DHDSYNQLCDFIYK 220 (326)
Q Consensus 145 ~a~~aG~d~Iein~g~P~~~~~r~d~yG--gsl~~r~~~l~eiv~avr~~~-~~pv~vK~r~g~~-~~~~~~e~~~~ia~ 220 (326)
++.++|+++|.|--+.. ..+.++.| +.-+-..+...+-+++++++. ..++.+--|.... ....+++.++. ++
T Consensus 98 ~l~~aGa~gv~iED~~~---~k~cgH~~~~~k~l~p~~e~~~kI~Aa~~a~~~~~~~i~aRtda~~a~~g~~~ai~R-a~ 173 (290)
T 2hjp_A 98 QYEAAGASAIVMEDKTF---PKDTSLRTDGRQELVRIEEFQGKIAAATAARADRDFVVIARVEALIAGLGQQEAVRR-GQ 173 (290)
T ss_dssp HHHHHTCSEEEEECBCS---SCCC-------CCBCCHHHHHHHHHHHHHHCSSTTSEEEEEECTTTTTCCHHHHHHH-HH
T ss_pred HHHHhCCeEEEEcCCCC---CccccccccCCCcccCHHHHHHHHHHHHHhcccCCcEEEEeehHhhccccHHHHHHH-HH
Confidence 99999999999976542 13345555 333333433344444444442 2233333333211 11235666654 45
Q ss_pred HhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCC--ceEEEe---CCCCCHHHHHHHHHhC-CChhh
Q 020423 221 VSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPD--LTFTLN---GGINTVDEVNAALRKG-AHHVM 294 (326)
Q Consensus 221 ~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~--iPVIa~---GgI~s~~da~~~l~~G-aD~V~ 294 (326)
.++++|+|.|.++++.. ..+.+.++.+.. + +|+++| +...+ ..++-+.| +..|.
T Consensus 174 ay~eAGAd~i~~e~~~~----------------~~~~~~~i~~~~-~~~vP~i~n~~~~~~~~---~~eL~~lG~v~~v~ 233 (290)
T 2hjp_A 174 AYEEAGADAILIHSRQK----------------TPDEILAFVKSW-PGKVPLVLVPTAYPQLT---EADIAALSKVGIVI 233 (290)
T ss_dssp HHHHTTCSEEEECCCCS----------------SSHHHHHHHHHC-CCSSCEEECGGGCTTSC---HHHHHTCTTEEEEE
T ss_pred HHHHcCCcEEEeCCCCC----------------CHHHHHHHHHHc-CCCCCEEEeccCCCCCC---HHHHHhcCCeeEEE
Confidence 66789999999987321 124456666665 5 999986 22333 45666689 88888
Q ss_pred hhHHHHh
Q 020423 295 VGRAAYQ 301 (326)
Q Consensus 295 iGRall~ 301 (326)
.|-.++.
T Consensus 234 ~~~~~~r 240 (290)
T 2hjp_A 234 YGNHAIR 240 (290)
T ss_dssp ECSHHHH
T ss_pred echHHHH
Confidence 8776653
|
| >2agk_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; TIM alpha/beta barrel; HET: CIT; 1.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.76 E-value=0.00049 Score=61.93 Aligned_cols=77 Identities=14% Similarity=0.016 Sum_probs=60.5
Q ss_pred HHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhH
Q 020423 218 IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGR 297 (326)
Q Consensus 218 ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGR 297 (326)
+++.+++.|++.+++-.-++ .+.+.+.++.++. .+||...|||++. ++.+++ .|||-|.+|+
T Consensus 43 ~A~~~~~~Ga~~l~vvDL~~---------------~n~~~i~~i~~~~-~~pv~vgGGir~~-~~~~~l-~Ga~~Viigs 104 (260)
T 2agk_A 43 YAKLYKDRDVQGCHVIKLGP---------------NNDDAAREALQES-PQFLQVGGGINDT-NCLEWL-KWASKVIVTS 104 (260)
T ss_dssp HHHHHHHTTCTTCEEEEESS---------------SCHHHHHHHHHHS-TTTSEEESSCCTT-THHHHT-TTCSCEEECG
T ss_pred HHHHHHHcCCCEEEEEeCCC---------------CCHHHHHHHHhcC-CceEEEeCCCCHH-HHHHHh-cCCCEEEECc
Confidence 35566778999998843221 1367777887775 8999999999987 999999 9999999999
Q ss_pred HHHhC-----CchhHHhHHH
Q 020423 298 AAYQN-----PWYTLGHVDT 312 (326)
Q Consensus 298 all~d-----P~l~~~~i~~ 312 (326)
+++.| |+++.+.++.
T Consensus 105 ~a~~~~g~~~p~~~~~~~~~ 124 (260)
T 2agk_A 105 WLFTKEGHFQLKRLERLTEL 124 (260)
T ss_dssp GGBCTTCCBCHHHHHHHHHH
T ss_pred HHHhhcCCCCHHHHHHHHHH
Confidence 99999 9965555544
|
| >4dye_A Isomerase; enolase family protein, EFI, enzym function initiative; 1.60A {Streptomyces coelicolor} PDB: 2oqh_A | Back alignment and structure |
|---|
Probab=96.66 E-value=0.027 Score=53.52 Aligned_cols=124 Identities=8% Similarity=-0.028 Sum_probs=90.4
Q ss_pred HHHHHHHHHHHHHC-CCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC-CCcEEEEeccCCCCCccHHH
Q 020423 136 LDNLAKATELANAY-NYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQ 213 (326)
Q Consensus 136 ~~~f~~aA~~a~~a-G~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~-~~pv~vK~r~g~~~~~~~~e 213 (326)
++++++.++.+.+. ||..+-+..| .+++.-.+.+++||+.+ +.++.+....+|+ .++
T Consensus 169 ~e~~~~~a~~~~~~~G~~~~K~KvG-----------------~~~~~d~~~v~avR~~~~~~~l~vDaN~~w~----~~~ 227 (398)
T 4dye_A 169 PKAMAEHAVRVVEEGGFDAVKLKGT-----------------TDCAGDVAILRAVREALPGVNLRVDPNAAWS----VPD 227 (398)
T ss_dssp HHHHHHHHHHHHHHHCCSEEEEECC-----------------SCHHHHHHHHHHHHHHCTTSEEEEECTTCSC----HHH
T ss_pred HHHHHHHHHHHHHhcCCCEEEEecC-----------------CCHHHHHHHHHHHHHhCCCCeEEeeCCCCCC----HHH
Confidence 68899988888887 9999999765 12444567888888887 4566666555553 445
Q ss_pred HHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhC-CCh
Q 020423 214 LCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKG-AHH 292 (326)
Q Consensus 214 ~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~G-aD~ 292 (326)
..+ +.+.+++.|+++|. . ..+ +++.++++.+.. ++||.+...+.+.+++.++++.| +|.
T Consensus 228 A~~-~~~~l~~~~i~~iE----q------------P~~--d~~~~~~l~~~~-~iPIa~dE~~~~~~~~~~~i~~~a~d~ 287 (398)
T 4dye_A 228 SVR-AGIALEELDLEYLE----D------------PCV--GIEGMAQVKAKV-RIPLCTNMCVVRFEDFAPAMRLNAVDV 287 (398)
T ss_dssp HHH-HHHHHGGGCCSEEE----C------------CSS--HHHHHHHHHHHC-CSCEEESSSCCSGGGHHHHHHTTCCSE
T ss_pred HHH-HHHHHhhcCCCEEc----C------------CCC--CHHHHHHHHhhC-CCCEEeCCcCCCHHHHHHHHHhCCCCE
Confidence 444 35567788998884 1 111 577777777765 89999999999999999999965 898
Q ss_pred hhhhHHHH
Q 020423 293 VMVGRAAY 300 (326)
Q Consensus 293 V~iGRall 300 (326)
|++--.-.
T Consensus 288 v~~k~~~~ 295 (398)
T 4dye_A 288 IHGDVYKW 295 (398)
T ss_dssp EEECHHHH
T ss_pred EEeCcccc
Confidence 88755444
|
| >1x1o_A Nicotinate-nucleotide pyrophosphorylase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.65 E-value=0.011 Score=53.83 Aligned_cols=109 Identities=19% Similarity=0.219 Sum_probs=67.0
Q ss_pred ccCCCCccccccCCHHHH-----HHHHHHHHhcCC--CcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCc
Q 020423 165 VAGHGCFGVSLMLDPKFV-----GEAMSVIAANTN--VPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKA 237 (326)
Q Consensus 165 ~~r~d~yGgsl~~r~~~l-----~eiv~avr~~~~--~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~ 237 (326)
|+|.+-|+.-+..+.+.. .+.++.+|+..+ .++.+-+ ++.++..+ .+ ++|+|+|-++.-.
T Consensus 160 nHR~~L~d~~LIkdnHi~~aggi~~av~~ar~~~~~~~~IgVev-------~t~eea~e----A~-~aGaD~I~ld~~~- 226 (286)
T 1x1o_A 160 NHRYGLFDGILLKENHVRAAGGVGEAVRRAKARAPHYLKVEVEV-------RSLEELEE----AL-EAGADLILLDNFP- 226 (286)
T ss_dssp CCCSSSSSCEEECHHHHHHHTSHHHHHHHHHHHSCTTSCEEEEE-------SSHHHHHH----HH-HHTCSEEEEESCC-
T ss_pred ccccccccceEEECCHHHHhCCHHHHHHHHHHhCCCCCEEEEEe-------CCHHHHHH----HH-HcCCCEEEECCCC-
Confidence 345444454444444332 445666676664 3454421 23444433 22 4799999887522
Q ss_pred ccCCCCcCCcCCCCCccHHHHHHHHhcC-CCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhCCc
Q 020423 238 LLNGISPAENRTIPPLKYEYYYALLRDF-PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW 304 (326)
Q Consensus 238 ~~~g~~~~~~~~~~~~~~~~i~~i~~~~-~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~dP~ 304 (326)
.+.+++..+.. .++|+.++||| +++.+.++.++|+|+|.+|.....-|+
T Consensus 227 -----------------~~~~k~av~~v~~~ipi~AsGGI-t~eni~~~a~tGvD~IsVgs~~~~a~~ 276 (286)
T 1x1o_A 227 -----------------LEALREAVRRVGGRVPLEASGNM-TLERAKAAAEAGVDYVSVGALTHSAKA 276 (286)
T ss_dssp -----------------HHHHHHHHHHHTTSSCEEEESSC-CHHHHHHHHHHTCSEEECTHHHHSCCC
T ss_pred -----------------HHHHHHHHHHhCCCCeEEEEcCC-CHHHHHHHHHcCCCEEEEcHHHcCCCc
Confidence 12222332221 26899999999 699999999999999999987766554
|
| >3kts_A Glycerol uptake operon antiterminator regulatory; structural genomics, PSI-2, protein structur initiative; HET: UNL; 2.75A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=96.62 E-value=0.00078 Score=57.63 Aligned_cols=47 Identities=19% Similarity=0.209 Sum_probs=40.3
Q ss_pred HHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhCC
Q 020423 256 EYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNP 303 (326)
Q Consensus 256 ~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~dP 303 (326)
+.+.++.+. +++|||+.|+|++.+++.++++.||++|..++.-|.+.
T Consensus 140 ~iI~~i~~~-~~~PiIaGGlI~~~edv~~al~aGA~aVsTs~~~LW~~ 186 (192)
T 3kts_A 140 EQVQKMTQK-LHIPVIAGGLIETSEQVNQVIASGAIAVTTSNKHLWEG 186 (192)
T ss_dssp HHHHHHHHH-HCCCEEEESSCCSHHHHHHHHTTTEEEEEECCGGGGTT
T ss_pred HHHHHHHHh-cCCCEEEECCcCCHHHHHHHHHcCCeEEEeCCHHHhCc
Confidence 566677666 49999999999999999999999999999997766553
|
| >3lye_A Oxaloacetate acetyl hydrolase; (alpha/beta)8 barrel; 1.30A {Cryphonectria parasitica} PDB: 3m0j_A* 3m0k_A | Back alignment and structure |
|---|
Probab=96.62 E-value=0.0084 Score=55.02 Aligned_cols=155 Identities=12% Similarity=0.095 Sum_probs=87.4
Q ss_pred CCcEEEEec-C-CCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCH-HHHHHHHHHHHhc---CCCcE
Q 020423 124 QHPIVLQIG-G-SNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDP-KFVGEAMSVIAAN---TNVPV 197 (326)
Q Consensus 124 ~~piivQL~-g-~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~-~~l~eiv~avr~~---~~~pv 197 (326)
+.|+++-+= | .++++..+.++++.++|+++|.|--.... +|.++.++.-+-.. +++..| ++.+++ .+.++
T Consensus 88 ~~PviaD~d~Gyg~~~~v~~~v~~l~~aGaagv~iEDq~~~---k~cgh~~gk~l~~~~e~~~rI-~Aa~~A~~~~~~d~ 163 (307)
T 3lye_A 88 GPPLIADMDTGYGGPIMVARTVEHYIRSGVAGAHLEDQILT---KRCGHLSGKKVVSRDEYLVRI-RAAVATKRRLRSDF 163 (307)
T ss_dssp SCCEEEECTTCSSSHHHHHHHHHHHHHTTCCEEEECCBCCC---C--------CBCCHHHHHHHH-HHHHHHHHHTTCCC
T ss_pred CCcEEEECCCCCCCHHHHHHHHHHHHHcCCeEEEEcCCCCC---cccCCCCCCeecCHHHHHHHH-HHHHHHHHhcCCCe
Confidence 478888862 2 25888889999999999999999654321 33444444333334 444444 333332 35555
Q ss_pred EEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEe---C
Q 020423 198 SVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLN---G 274 (326)
Q Consensus 198 ~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~---G 274 (326)
.+--|........+++.++.. +.+.++|+|.|-+++.. ..+.+.++.+....+||.+| |
T Consensus 164 ~I~ARTDa~~~~gldeAi~Ra-~ay~eAGAD~ifi~~~~-----------------~~~~~~~i~~~~~~~Pv~~n~~~~ 225 (307)
T 3lye_A 164 VLIARTDALQSLGYEECIERL-RAARDEGADVGLLEGFR-----------------SKEQAAAAVAALAPWPLLLNSVEN 225 (307)
T ss_dssp EEEEEECCHHHHCHHHHHHHH-HHHHHTTCSEEEECCCS-----------------CHHHHHHHHHHHTTSCBEEEEETT
T ss_pred EEEEechhhhccCHHHHHHHH-HHHHHCCCCEEEecCCC-----------------CHHHHHHHHHHccCCceeEEeecC
Confidence 555555321112355665543 44567999999988632 13455566665434787654 3
Q ss_pred CCCCHHHHHHHHHhCCChhhhhHHHH
Q 020423 275 GINTVDEVNAALRKGAHHVMVGRAAY 300 (326)
Q Consensus 275 gI~s~~da~~~l~~GaD~V~iGRall 300 (326)
|-...-...++-+.|+..|..+-.++
T Consensus 226 g~~p~~t~~eL~~lGv~~v~~~~~~~ 251 (307)
T 3lye_A 226 GHSPLITVEEAKAMGFRIMIFSFATL 251 (307)
T ss_dssp SSSCCCCHHHHHHHTCSEEEEETTTH
T ss_pred CCCCCCCHHHHHHcCCeEEEEChHHH
Confidence 32211134566668988887766544
|
| >2b7n_A Probable nicotinate-nucleotide pyrophosphorylase; quinolinate phosphoribosyltransferase, quinolinic acid, HELI pylori, transferase; HET: NTM; 2.30A {Helicobacter pylori} PDB: 2b7p_A* 2b7q_A* | Back alignment and structure |
|---|
Probab=96.62 E-value=0.004 Score=56.29 Aligned_cols=94 Identities=14% Similarity=0.232 Sum_probs=61.9
Q ss_pred HHHHHHHHhcCCC--cEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHH-HH
Q 020423 183 GEAMSVIAANTNV--PVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEY-YY 259 (326)
Q Consensus 183 ~eiv~avr~~~~~--pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~-i~ 259 (326)
.+.++++|+..+. ++.+-+ +++++..+ .+ ++|+|+|-++... +..... ..
T Consensus 169 ~~ai~~~r~~~~~~~~i~vev-------~tlee~~~----A~-~aGaD~I~ld~~~---------------~~~l~~~v~ 221 (273)
T 2b7n_A 169 KSFLTHARKNLPFTAKIEIEC-------ESFEEAKN----AM-NAGADIVMCDNLS---------------VLETKEIAA 221 (273)
T ss_dssp HHHHHHHGGGSCTTCCEEEEE-------SSHHHHHH----HH-HHTCSEEEEETCC---------------HHHHHHHHH
T ss_pred HHHHHHHHHhCCCCceEEEEc-------CCHHHHHH----HH-HcCCCEEEECCCC---------------HHHHHHHHH
Confidence 5667777776643 444421 23444433 22 4799999887421 111222 22
Q ss_pred HHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhCCc
Q 020423 260 ALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW 304 (326)
Q Consensus 260 ~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~dP~ 304 (326)
.+...++++||.++||| +++.+.++.+.|+|.+.+|+.....|+
T Consensus 222 ~l~~~~~~~~i~AsGGI-~~~ni~~~~~aGaD~i~vGs~i~~a~~ 265 (273)
T 2b7n_A 222 YRDAHYPFVLLEASGNI-SLESINAYAKSGVDAISVGALIHQATF 265 (273)
T ss_dssp HHHHHCTTCEEEEESSC-CTTTHHHHHTTTCSEEECTHHHHTCCC
T ss_pred HhhccCCCcEEEEECCC-CHHHHHHHHHcCCcEEEEcHHhcCCCC
Confidence 22234567999999999 999999999999999999999776665
|
| >1s2w_A Phosphoenolpyruvate phosphomutase; phosphonopyruvate, phosphonate biosynthesis pathway, isomera; 1.69A {Mytilus edulis} SCOP: c.1.12.7 PDB: 1m1b_A 1s2t_A 1s2v_A 1pym_A 1s2u_A | Back alignment and structure |
|---|
Probab=96.59 E-value=0.028 Score=51.27 Aligned_cols=200 Identities=10% Similarity=0.058 Sum_probs=106.6
Q ss_pred CCChHHHHHHHHHcCCCcEEEecce-eecccccccc---chhhhhh-----cCCCCCcEEEEec-C-CCHHHHHHHHHHH
Q 020423 78 DWTDNHYRTLARLISKHAWLYTEML-AAETIIYQQG---NLDRFLA-----FSPEQHPIVLQIG-G-SNLDNLAKATELA 146 (326)
Q Consensus 78 ~~s~~~~r~~~~~~Gg~gli~te~~-~~~~~~~~~~---~~~~~~~-----~~~~~~piivQL~-g-~~~~~f~~aA~~a 146 (326)
+.-|.....++.+.| +..+++... ....+.+.+. ..+..+. ....+.|+++-+= | .++++..+.++++
T Consensus 25 ~a~D~~sA~~~~~aG-~~ai~vsg~~~a~~lG~pD~~~vt~~em~~~~~~I~~~~~~PviaD~d~Gyg~~~~v~~~v~~l 103 (295)
T 1s2w_A 25 EAHNGLSARIVQEAG-FKGIWGSGLSVSAQLGVRDSNEASWTQVVEVLEFMSDASDVPILLDADTGYGNFNNARRLVRKL 103 (295)
T ss_dssp EECSHHHHHHHHHHT-CSCEEECCHHHHHTC---------CHHHHHHHHHHHHTCSSCEEEECCSSCSSHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHcC-CCEEEeChHHHHHhCCCCCCCCCCHHHHHHHHHHHHhcCCCCEEecCCCCCCCHHHHHHHHHHH
Confidence 445666666655555 666666632 1112222221 1111111 1335678888762 2 2578888999999
Q ss_pred HHCCCCEEEecCCCCCCcccCCCCccc---cccCCHHHHHHHHHHHHhcCCCcEEEEeccCCC-CCccHHHHHHHHHHHh
Q 020423 147 NAYNYDEINLNCGCPSPKVAGHGCFGV---SLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVD-DHDSYNQLCDFIYKVS 222 (326)
Q Consensus 147 ~~aG~d~Iein~g~P~~~~~r~d~yGg---sl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~-~~~~~~e~~~~ia~~l 222 (326)
.++|+++|.|--+.. ..+.++.|+ .+....+++..|-.++....+.++.+--|.... ....+++.++. ++.+
T Consensus 104 ~~aGaagv~iED~~~---~k~cgH~gg~~k~l~p~~e~~~rI~Aa~~a~~~~~~~i~aRtda~~a~~g~~~ai~R-a~ay 179 (295)
T 1s2w_A 104 EDRGVAGACLEDKLF---PKTNSLHDGRAQPLADIEEFALKIKACKDSQTDPDFCIVARVEAFIAGWGLDEALKR-AEAY 179 (295)
T ss_dssp HHTTCCEEEEECBCC-----------CTTCCBCCHHHHHHHHHHHHHHCSSTTCEEEEEECTTTTTCCHHHHHHH-HHHH
T ss_pred HHcCCcEEEECCCCC---CccccccCCCCCcccCHHHHHHHHHHHHHhcccCCcEEEEeehHHhccccHHHHHHH-HHHH
Confidence 999999999976532 133455553 343333444444333333333344443344222 11235666654 4566
Q ss_pred hhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCC-CceEEEeCC---CCCHHHHHHHHHhCCChhhhhHH
Q 020423 223 SLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFP-DLTFTLNGG---INTVDEVNAALRKGAHHVMVGRA 298 (326)
Q Consensus 223 e~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~-~iPVIa~Gg---I~s~~da~~~l~~GaD~V~iGRa 298 (326)
+++|+|.|.++++.. +.+.++++.+... .+|++++-+ -.+ ..++-+.|+..|..+-.
T Consensus 180 ~eAGAd~i~~e~~~~----------------~~~~~~~i~~~~~~~~P~i~~~~~~~~~~---~~eL~~lGv~~v~~~~~ 240 (295)
T 1s2w_A 180 RNAGADAILMHSKKA----------------DPSDIEAFMKAWNNQGPVVIVPTKYYKTP---TDHFRDMGVSMVIWANH 240 (295)
T ss_dssp HHTTCSEEEECCCSS----------------SSHHHHHHHHHHTTCSCEEECCSTTTTSC---HHHHHHHTCCEEEECSH
T ss_pred HHcCCCEEEEcCCCC----------------CHHHHHHHHHHcCCCCCEEEeCCCCCCCC---HHHHHHcCCcEEEEChH
Confidence 789999999875311 1234455555541 389998833 233 56777789999998877
Q ss_pred HHh
Q 020423 299 AYQ 301 (326)
Q Consensus 299 ll~ 301 (326)
++.
T Consensus 241 ~~r 243 (295)
T 1s2w_A 241 NLR 243 (295)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
|
| >2yyu_A Orotidine 5'-phosphate decarboxylase; TIM barrel, structural genomics, NPPSFA, national project on structural and functional analyses; HET: C5P; 2.20A {Geobacillus kaustophilus} PDB: 2yyt_A* | Back alignment and structure |
|---|
Probab=96.54 E-value=0.026 Score=50.00 Aligned_cols=153 Identities=12% Similarity=0.117 Sum_probs=84.2
Q ss_pred CCcEEEEec-CCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhc--CC--CcEE
Q 020423 124 QHPIVLQIG-GSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAAN--TN--VPVS 198 (326)
Q Consensus 124 ~~piivQL~-g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~--~~--~pv~ 198 (326)
+.++++-+. +..++....+++.+.++|+|.|.+|. |++ .+.+.+.++.+++. .+ .+..
T Consensus 55 ~~~v~lD~kl~Dip~t~~~~~~~~~~~Gad~vTvH~------------~~g-----~~~l~~~~~~~~~~~~~G~~~~~~ 117 (246)
T 2yyu_A 55 GHAVFLDLKLHDIPNTVKQAMKGLARVGADLVNVHA------------AGG-----RRMMEAAIEGLDAGTPSGRMRPRC 117 (246)
T ss_dssp TCEEEEEEEECSCHHHHHHHHHHHHHTTCSEEEEEG------------GGC-----HHHHHHHHHHHHHHSCSSSCCCEE
T ss_pred CCeEEEEeecccchHHHHHHHHHHHhcCCCEEEEEC------------CCC-----HHHHHHHHHHHHhhcccCCcCCCE
Confidence 445655543 35567666677888899999999995 121 33455677777652 33 3422
Q ss_pred EEeccCCCC-CccH----------HHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCC
Q 020423 199 VKCRIGVDD-HDSY----------NQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPD 267 (326)
Q Consensus 199 vK~r~g~~~-~~~~----------~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~ 267 (326)
+-+...... ...+ .+.+..++....+.|.+.+..+. .+ +.++++....
T Consensus 118 lav~~~Ts~~~~~l~~~~~~~~~~~d~Vl~ma~~~~~~G~~g~V~~~--------------------~e-i~~lr~~~~~ 176 (246)
T 2yyu_A 118 IAVTQLTSTDERMLHEELWISRPLVETVAHYAALAKESGLDGVVCSA--------------------NE-AAFIKERCGA 176 (246)
T ss_dssp EEESSCTTCCHHHHHHTSCCCSCHHHHHHHHHHHHHHHTCCEEECCH--------------------HH-HHHHHHHHCT
T ss_pred EEEEeCCCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCEEEeCH--------------------HH-HHHHHHhcCC
Confidence 322221111 0111 12221222222345665543221 23 4444443333
Q ss_pred ceEEEeCCCCCH-H---------HHHHHHHhCCChhhhhHHHHhCCc--hhHHhHHHhh
Q 020423 268 LTFTLNGGINTV-D---------EVNAALRKGAHHVMVGRAAYQNPW--YTLGHVDTAI 314 (326)
Q Consensus 268 iPVIa~GgI~s~-~---------da~~~l~~GaD~V~iGRall~dP~--l~~~~i~~~~ 314 (326)
.+++..|||+.. . .+.++++.|+|.+.+||+++..++ -..+.+.+.+
T Consensus 177 ~~i~V~gGI~~~g~~~~dq~rv~t~~~a~~aGad~iVvGr~I~~a~dp~~a~~~l~~~i 235 (246)
T 2yyu_A 177 SFLAVTPGIRFADDAAHDQVRVVTPRKARALGSDYIVIGRSLTRAADPLRTYARLQHEW 235 (246)
T ss_dssp TSEEEECCCCCCC-------CCCCHHHHHHHTCSEEEECHHHHTSSSHHHHHHHHHHHC
T ss_pred CCEEEeCCcCCCCCCcccccccCCHHHHHHcCCCEEEECHhhcCCCCHHHHHHHHHHHH
Confidence 458999999742 1 477788899999999999998554 3344444433
|
| >3ve9_A Orotidine-5'-phosphate decarboxylase; TIM barrel fold, orotidine 5'-monopho decarboxylase, lyase; 1.45A {Metallosphaera sedula} PDB: 3ve7_A | Back alignment and structure |
|---|
Probab=96.51 E-value=0.017 Score=50.21 Aligned_cols=147 Identities=14% Similarity=0.163 Sum_probs=88.4
Q ss_pred CCCcEEEEec-CCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccc-cccCCHHHHHHHHHHHHhcCCCcEEEE
Q 020423 123 EQHPIVLQIG-GSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGV-SLMLDPKFVGEAMSVIAANTNVPVSVK 200 (326)
Q Consensus 123 ~~~piivQL~-g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGg-sl~~r~~~l~eiv~avr~~~~~pv~vK 200 (326)
.+.++++-+- +.-+.....+++.+.++ +|.+.+|.. || .- -.+-+ + . +.-+.+=
T Consensus 49 ~g~~VflDlK~~DIpnTv~~a~~~~~~~-ad~vTvh~~------------~G~~~--~~~~~----~---~--~~~v~vL 104 (215)
T 3ve9_A 49 VDGIKILDLKLADIDNTMILIVDELKDI-TNSFIAHAF------------VGVEG--SLASL----S---Q--RVDLFLV 104 (215)
T ss_dssp CCSEEEEEEEECSCHHHHHHHHHHHTTT-CSEEEEEGG------------GCTTT--THHHH----H---H--HSEEEEE
T ss_pred cCCcEEEEecccCchhHHHHHHHHHHHh-hheEEEeCC------------CCcHH--HHHhH----h---c--CCCEEEE
Confidence 4678888875 44456666777888889 999999852 22 10 01111 1 1 1224443
Q ss_pred eccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCH-
Q 020423 201 CRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTV- 279 (326)
Q Consensus 201 ~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~- 279 (326)
.+.+..+.. ++....+++..+++|+|.+++++.. .+.+..+++..++ .++..+||+..
T Consensus 105 ts~s~~~~~--~~~v~~~a~~a~~~G~~GvV~sat~------------------~~e~~~ir~~~~~-f~~v~pGI~~~g 163 (215)
T 3ve9_A 105 LSMSHPGWN--DAFYPYLREVARRVNPKGFVAPATR------------------PSMISRVKGDFPD-KLVISPGVGTQG 163 (215)
T ss_dssp CCCSSTTCC--GGGHHHHHHHHHHHCCSEEECCTTS------------------HHHHHHHHHHCTT-SEEEECCTTSTT
T ss_pred EecCCcchH--HHHHHHHHHHHHHcCCCceeeCCCC------------------HHHHHHHHHhCCC-cEEEcCCCCcCc
Confidence 344322211 2223334556667899988875421 2344556666667 78888999742
Q ss_pred HHHHHHHHhCCChhhhhHHHHhCCc--hhHHhHHHhh
Q 020423 280 DEVNAALRKGAHHVMVGRAAYQNPW--YTLGHVDTAI 314 (326)
Q Consensus 280 ~da~~~l~~GaD~V~iGRall~dP~--l~~~~i~~~~ 314 (326)
.+..++++.|+|.+.+||+++..++ -..+.+.+.+
T Consensus 164 ~~~~~a~~~Gad~iVvGr~I~~a~dp~~a~~~i~~~i 200 (215)
T 3ve9_A 164 AKPGIALCHGADYEIVGRSVYQSADPVRKLEEIVRSQ 200 (215)
T ss_dssp CCTTHHHHTTCSEEEECHHHHTSSSHHHHHHHHHHHH
T ss_pred CCHHHHHHcCCCEEEeCHHHcCCCCHHHHHHHHHHHH
Confidence 2567788999999999999997544 3344444433
|
| >3tr2_A Orotidine 5'-phosphate decarboxylase; purines, pyrimidines, nucleosides, nucleotides, lyase; 2.00A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=96.50 E-value=0.27 Score=43.34 Aligned_cols=144 Identities=13% Similarity=0.154 Sum_probs=85.0
Q ss_pred CCCcEEEEec-CCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhc--CCCcEEE
Q 020423 123 EQHPIVLQIG-GSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAAN--TNVPVSV 199 (326)
Q Consensus 123 ~~~piivQL~-g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~--~~~pv~v 199 (326)
.+.++++-+- +.-+.....+++.+.++|+|.+.+|. ||| .+-+...++..++. .+.|..+
T Consensus 58 ~g~~iflDlK~~DI~nTv~~~~~~~~~~gad~vTvh~------------~~G-----~~~~~~a~~~~~~~~~~~~~~l~ 120 (239)
T 3tr2_A 58 KGYRIFLDLKFYDIPQTVAGACRAVAELGVWMMNIHI------------SGG-----RTMMETVVNALQSITLKEKPLLI 120 (239)
T ss_dssp TTCCEEEEEEECSCHHHHHHHHHHHHHTTCSEEEEEG------------GGC-----HHHHHHHHHHHHTCCCSSCCEEE
T ss_pred cCCCEEEEecccccchHHHHHHHHHHhCCCCEEEEec------------cCC-----HHHHHHHHHHHHhcCcCCCceEE
Confidence 4678888875 34466667778889999999999985 332 33444445544332 1234333
Q ss_pred EeccC--CCC--------CccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCce
Q 020423 200 KCRIG--VDD--------HDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLT 269 (326)
Q Consensus 200 K~r~g--~~~--------~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iP 269 (326)
-+..- .++ ...+.+....+++...++|+|.+++++.+ ...+++...+-.
T Consensus 121 ~Vt~LTS~~~~~l~~~g~~~~~~~~v~~~A~~a~~~g~~GvV~s~~e---------------------~~~ir~~~~~~f 179 (239)
T 3tr2_A 121 GVTILTSLDGSDLKTLGIQEKVPDIVCRMATLAKSAGLDGVVCSAQE---------------------AALLRKQFDRNF 179 (239)
T ss_dssp EECSCTTCCHHHHHHTTCCSCHHHHHHHHHHHHHHHTCCEEECCHHH---------------------HHHHHTTCCTTS
T ss_pred EEEEEeeCCHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCEEEECchh---------------------HHHHHHhcCCCc
Confidence 32221 111 01233444445566667899999866421 123344433334
Q ss_pred EEEeCCCCCHH----------HHHHHHHhCCChhhhhHHHHhCCc
Q 020423 270 FTLNGGINTVD----------EVNAALRKGAHHVMVGRAAYQNPW 304 (326)
Q Consensus 270 VIa~GgI~s~~----------da~~~l~~GaD~V~iGRall~dP~ 304 (326)
++.+.||+-.. +..++++.|+|.+.+||+++..++
T Consensus 180 l~vtPGIr~~g~~~~dQ~rv~t~~~~~~aGad~lVvGr~I~~a~d 224 (239)
T 3tr2_A 180 LLVTPGIRLETDEKGDQKRVMTPRAAIQAGSDYLVIGRPITQSTD 224 (239)
T ss_dssp EEEECCBC----------CCBCHHHHHHHTCSEEEECHHHHTSSS
T ss_pred EEECCCcCCCCCCcCcccccCCHHHHHHcCCCEEEEChHHhCCCC
Confidence 67778886322 155678899999999999997554
|
| >3fa4_A 2,3-dimethylmalate lyase; alpha/beta barrel, helix swapping; 2.18A {Aspergillus niger} PDB: 3fa3_A | Back alignment and structure |
|---|
Probab=96.42 E-value=0.025 Score=51.68 Aligned_cols=156 Identities=13% Similarity=0.144 Sum_probs=89.1
Q ss_pred CCcEEEEec-C-CCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccc-cccCCHHHHHHHHHHHHhc--CCCcEE
Q 020423 124 QHPIVLQIG-G-SNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGV-SLMLDPKFVGEAMSVIAAN--TNVPVS 198 (326)
Q Consensus 124 ~~piivQL~-g-~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGg-sl~~r~~~l~eiv~avr~~--~~~pv~ 198 (326)
+.|+++-+= | .++++..+.++++.++|+.+|.|--.... +|.++.++ .+....+++.+|-.++... .+.++.
T Consensus 80 ~~PviaD~d~Gyg~~~~v~~tv~~l~~aGaagv~iEDq~~~---Krcgh~~gk~l~~~~e~~~rI~Aa~~A~~~~~~d~~ 156 (302)
T 3fa4_A 80 STPVIADADTGYGGPIMVARTTEQYSRSGVAAFHIEDQVQT---KRCGHLAGKILVDTDTYVTRIRAAVQARQRIGSDIV 156 (302)
T ss_dssp TSCEEEECTTTTSSHHHHHHHHHHHHHTTCCEEEECSBCCC----------CCCBCCHHHHHHHHHHHHHHHHHHTCCCE
T ss_pred CCCEEEECCCCCCCHHHHHHHHHHHHHcCCcEEEECCCCCC---cccCCCCCCeecCHHHHHHHHHHHHHHHHhcCCCEE
Confidence 678888872 2 25888899999999999999999654321 23344433 3333334444444333221 245555
Q ss_pred EEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEe---CC
Q 020423 199 VKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLN---GG 275 (326)
Q Consensus 199 vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~---Gg 275 (326)
+=-|........++|.++.. +.+.++|+|.|-+++.. ..+.+.++.+.....|+.+| +|
T Consensus 157 I~ARTDa~~~~gldeAi~Ra-~ay~eAGAD~ifi~g~~-----------------~~~ei~~~~~~~~~~Pl~~n~~~~g 218 (302)
T 3fa4_A 157 VIARTDSLQTHGYEESVARL-RAARDAGADVGFLEGIT-----------------SREMARQVIQDLAGWPLLLNMVEHG 218 (302)
T ss_dssp EEEEECCHHHHCHHHHHHHH-HHHHTTTCSEEEETTCC-----------------CHHHHHHHHHHTTTSCEEEECCTTS
T ss_pred EEEEecccccCCHHHHHHHH-HHHHHcCCCEEeecCCC-----------------CHHHHHHHHHHhcCCceeEEEecCC
Confidence 54454321112456666643 34567999999987632 14556667766545788765 33
Q ss_pred CCCHHHHHHHHHhCCChhhhhHHHH
Q 020423 276 INTVDEVNAALRKGAHHVMVGRAAY 300 (326)
Q Consensus 276 I~s~~da~~~l~~GaD~V~iGRall 300 (326)
-...-...++-+.|+..|..+-.++
T Consensus 219 ~~p~~~~~eL~~lGv~~v~~~~~~~ 243 (302)
T 3fa4_A 219 ATPSISAAEAKEMGFRIIIFPFAAL 243 (302)
T ss_dssp SSCCCCHHHHHHHTCSEEEETTTTH
T ss_pred CCCCCCHHHHHHcCCCEEEEchHHH
Confidence 2111234556667888888775554
|
| >3tfx_A Orotidine 5'-phosphate decarboxylase; PSI-biology, nysgrc, 000529, structural genomics, NEW YORK S genomics research consortium; 2.19A {Lactobacillus acidophilus} | Back alignment and structure |
|---|
Probab=96.39 E-value=0.21 Score=44.50 Aligned_cols=153 Identities=12% Similarity=0.101 Sum_probs=90.1
Q ss_pred CCCcEEEEec-CCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC--C--CcE
Q 020423 123 EQHPIVLQIG-GSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--N--VPV 197 (326)
Q Consensus 123 ~~~piivQL~-g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~--~--~pv 197 (326)
.+.++++-+- +.-+.....+++.+.++|+|.+.+|. ||| .+-+...++..++.. + .|.
T Consensus 55 ~g~~VflDlK~~DIpnTv~~a~~~~~~~gad~vTVh~------------~~G-----~~~~~aa~~~~~~~~~~g~~~~~ 117 (259)
T 3tfx_A 55 QGYKIFLDLKMHDIPNTVYNGAKALAKLGITFTTVHA------------LGG-----SQMIKSAKDGLIAGTPAGHSVPK 117 (259)
T ss_dssp TTCEEEEEEEECSCHHHHHHHHHHHHTTTCSEEEEEG------------GGC-----HHHHHHHHHHHHHHSCTTSCCCE
T ss_pred CCCcEEEEecccccchHHHHHHHHHHhcCCCEEEEcC------------CCC-----HHHHHHHHHHHHHhcccCCCCce
Confidence 4677887774 44466667778888899999999985 332 334445555554321 2 333
Q ss_pred EEEecc--CCC------C---CccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCC
Q 020423 198 SVKCRI--GVD------D---HDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFP 266 (326)
Q Consensus 198 ~vK~r~--g~~------~---~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~ 266 (326)
.+-+.. +.+ + ..++.+....+++...++|+|.++++..+ ...+++. ..
T Consensus 118 li~Vt~lTS~~~~~l~~~~g~~~~~~e~v~~~A~~a~~~G~dGvV~s~~e------------------~~~ir~~---~~ 176 (259)
T 3tfx_A 118 LLAVTELTSISDDVLRNEQNCRLPMAEQVLSLAKMAKHSGADGVICSPLE------------------VKKLHEN---IG 176 (259)
T ss_dssp EEEECSCTTCCHHHHHHTSCBSSCHHHHHHHHHHHHHHTTCCEEECCGGG------------------HHHHHHH---HC
T ss_pred EEEEEEeCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCEEEECHHH------------------HHHHHhh---cC
Confidence 332211 111 0 11344444445666677999998865311 2233332 22
Q ss_pred CceEEEeCCCCCHH----------HHHHHHHhCCChhhhhHHHHhCCc--hhHHhHHHh
Q 020423 267 DLTFTLNGGINTVD----------EVNAALRKGAHHVMVGRAAYQNPW--YTLGHVDTA 313 (326)
Q Consensus 267 ~iPVIa~GgI~s~~----------da~~~l~~GaD~V~iGRall~dP~--l~~~~i~~~ 313 (326)
+-.++.+.||+-.. ...++++.|||.+.+||++...++ -..+.+.+.
T Consensus 177 ~~f~~vtPGIr~~g~~~gDQ~Rv~T~~~a~~aGad~iVvGr~I~~a~dp~~a~~~i~~~ 235 (259)
T 3tfx_A 177 DDFLYVTPGIRPAGNAKDDQSRVATPKMAKEWGSSAIVVGRPITLASDPKAAYEAIKKE 235 (259)
T ss_dssp SSSEEEECCCCCC-----------CHHHHHHTTCSEEEECHHHHTSSSHHHHHHHHHHH
T ss_pred CccEEEcCCcCCCCCCcCCccccCCHHHHHHcCCCEEEEChHHhCCCCHHHHHHHHHHH
Confidence 33467788886431 266788899999999999997554 334444443
|
| >1vc4_A Indole-3-glycerol phosphate synthase; lyase, tryptophan biosynthesis, riken structural genomics/PR initiative, RSGI, structural genomics; 1.80A {Thermus thermophilus} SCOP: c.1.2.4 | Back alignment and structure |
|---|
Probab=96.39 E-value=0.017 Score=51.57 Aligned_cols=71 Identities=10% Similarity=-0.074 Sum_probs=56.5
Q ss_pred HHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhH
Q 020423 218 IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGR 297 (326)
Q Consensus 218 ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGR 297 (326)
+++.++++|+++|+|-.-..+.. ...+.+..+++.+ ++||+.-++|.+..++.++++.|||+|.++.
T Consensus 70 ~A~~~~~~GA~~isvlt~~~~f~------------G~~~~l~~i~~~v-~lPvl~kdfI~d~~qi~~a~~~GAD~VlL~~ 136 (254)
T 1vc4_A 70 AALAYARGGARAVSVLTEPHRFG------------GSLLDLKRVREAV-DLPLLRKDFVVDPFMLEEARAFGASAALLIV 136 (254)
T ss_dssp HHHHHHHTTCSEEEEECCCSSSC------------CCHHHHHHHHHHC-CSCEEEESCCCSHHHHHHHHHTTCSEEEEEH
T ss_pred HHHHHHHcCCCEEEEecchhhhc------------cCHHHHHHHHHhc-CCCEEECCcCCCHHHHHHHHHcCCCEEEECc
Confidence 45677889999999954332221 1256677776664 9999999999999999999999999999999
Q ss_pred HHHh
Q 020423 298 AAYQ 301 (326)
Q Consensus 298 all~ 301 (326)
..+.
T Consensus 137 ~~l~ 140 (254)
T 1vc4_A 137 ALLG 140 (254)
T ss_dssp HHHG
T ss_pred cchH
Confidence 9987
|
| >1vqt_A Orotidine 5'-phosphate decarboxylase; TM0332, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.00A {Thermotoga maritima} SCOP: c.1.2.3 | Back alignment and structure |
|---|
Probab=96.39 E-value=0.031 Score=48.53 Aligned_cols=133 Identities=12% Similarity=0.119 Sum_probs=77.9
Q ss_pred CCCCcEEEEec-CCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEE
Q 020423 122 PEQHPIVLQIG-GSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVK 200 (326)
Q Consensus 122 ~~~~piivQL~-g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK 200 (326)
+.+.++++-+- +.-+.....+++.+.++|+|.|.+|. |+| .+ .++...+... |..+-
T Consensus 56 ~~~~~v~lD~K~~DI~nT~~~~v~~~~~~GaD~vTvh~------------~~G-----~~----~l~~~~~~~~-~~~~~ 113 (213)
T 1vqt_A 56 KRNLKIILDLKFCDIPSTVERSIKSWDHPAIIGFTVHS------------CAG-----YE----SVERALSATD-KHVFV 113 (213)
T ss_dssp TTTCEEEEEEEECSCHHHHHHHHHHHCCTTEEEEEEEG------------GGC-----HH----HHHHHHHHCS-SEEEE
T ss_pred HCCCCEEEEeecccCchHHHHHHHHHHHCCCCEEEEec------------cCC-----HH----HHHHHHHhcC-CCeEE
Confidence 34678888874 33456667777888899999999985 232 12 2333333332 32222
Q ss_pred ecc--CCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCC
Q 020423 201 CRI--GVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT 278 (326)
Q Consensus 201 ~r~--g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s 278 (326)
+.. .... . +.+....+++. .+.|+| +..+. +.+.++++.. ..| +..+||+-
T Consensus 114 V~~lts~~~-~-l~~~v~~~a~~-~e~G~d-vV~~~---------------------~~~~~ir~~~-~~~-~v~pGI~~ 166 (213)
T 1vqt_A 114 VVKLTSMEG-S-LEDYMDRIEKL-NKLGCD-FVLPG---------------------PWAKALREKI-KGK-ILVPGIRM 166 (213)
T ss_dssp ECCCTTSCC-C-HHHHHHHHHHH-HHHTCE-EECCH---------------------HHHHHHTTTC-CSC-EEECCBC-
T ss_pred EEEeCCCCH-H-HHHHHHHHHHH-hcCCCE-EEEcH---------------------HHHHHHHHHC-CCC-EEECCCCC
Confidence 221 2222 1 32333445666 778999 44321 2234444444 346 88888864
Q ss_pred HH---H------HHHHHHhCCChhhhhHHHHhCCc
Q 020423 279 VD---E------VNAALRKGAHHVMVGRAAYQNPW 304 (326)
Q Consensus 279 ~~---d------a~~~l~~GaD~V~iGRall~dP~ 304 (326)
.. | ..+ ++.|+|++.+||+++..++
T Consensus 167 ~~~~~dq~rv~t~~~-i~aGad~iVvGR~I~~a~d 200 (213)
T 1vqt_A 167 EVKADDQKDVVTLEE-MKGIANFAVLGREIYLSEN 200 (213)
T ss_dssp --------CCBCHHH-HTTTCSEEEESHHHHTSSC
T ss_pred CCCccchhhcCCHHH-HHCCCCEEEEChhhcCCCC
Confidence 32 1 567 8899999999999998776
|
| >1eix_A Orotidine 5'-monophosphate decarboxylase; alpha-beta-barrel, protein-inhibitor complex, homodimer, lyase; HET: BMQ; 2.50A {Escherichia coli} SCOP: c.1.2.3 PDB: 1jjk_A* 1l2u_A | Back alignment and structure |
|---|
Probab=96.36 E-value=0.052 Score=48.03 Aligned_cols=143 Identities=14% Similarity=0.128 Sum_probs=80.1
Q ss_pred CCcEEEEec-CCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCC-CcEEEEe
Q 020423 124 QHPIVLQIG-GSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTN-VPVSVKC 201 (326)
Q Consensus 124 ~~piivQL~-g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~-~pv~vK~ 201 (326)
+.++++-+. +..++....+++.+.++|+|.|.+|.- ++ .+-+...++.+++.-. .+..+-+
T Consensus 65 ~~~v~lD~kl~Dip~t~~~~i~~~~~~Gad~vTvH~~------------~g-----~~~l~~~~~~~~~~G~~~~~~l~v 127 (245)
T 1eix_A 65 GFDIFLDLKFHDIPNTAAHAVAAAADLGVWMVNVHAS------------GG-----ARMMTAAREALVPFGKDAPLLIAV 127 (245)
T ss_dssp TCCEEEEEEECSCHHHHHHHHHHHHHHTCSEEEEBGG------------GC-----HHHHHHHHHTTGGGGGGCCEEEEE
T ss_pred CCcEEEEeeccccHHHHHHHHHHHHhCCCCEEEEecc------------CC-----HHHHHHHHHHHHHcCCCCCcEEEE
Confidence 445655543 355666666777888899999999952 21 2234456666554311 2422222
Q ss_pred ccCCCC-Cc---------cHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEE
Q 020423 202 RIGVDD-HD---------SYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFT 271 (326)
Q Consensus 202 r~g~~~-~~---------~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVI 271 (326)
...... .. +..+.+..++....+.|.+.+..+. ++ +.++++...+.+++
T Consensus 128 ~~~ts~~~~~l~~~~~~~~~~d~Vl~ma~~~~~~G~~g~V~~~--------------------~e-i~~lr~~~~~~~i~ 186 (245)
T 1eix_A 128 TVLTSMEASDLVDLGMTLSPADYAERLAALTQKCGLDGVVCSA--------------------QE-AVRFKQVFGQEFKL 186 (245)
T ss_dssp CSCTTCCHHHHHTTTCCSCHHHHHHHHHHHHHHTTCSEEECCG--------------------GG-HHHHHHHHCSSSEE
T ss_pred EecCCCCHHHHHHhccCCCHHHHHHHHHHHHHHcCCCeEEeCH--------------------HH-HHHHHHhcCCCCEE
Confidence 221111 01 1112222222223446666654321 22 33343333346899
Q ss_pred EeCCCCCHH----------HHHHHHHhCCChhhhhHHHHhCCc
Q 020423 272 LNGGINTVD----------EVNAALRKGAHHVMVGRAAYQNPW 304 (326)
Q Consensus 272 a~GgI~s~~----------da~~~l~~GaD~V~iGRall~dP~ 304 (326)
..|||+..- .+.++++.|+|.+.+||+++..++
T Consensus 187 v~gGI~~~g~~~~dq~rv~t~~~a~~aGad~iVvGr~I~~a~d 229 (245)
T 1eix_A 187 VTPGIRPQGSEAGDQRRIMTPEQALSAGVDYMVIGRPVTQSVD 229 (245)
T ss_dssp EECCBCCTTCCCTTCCSCBCHHHHHHTTCSEEEECHHHHTSSS
T ss_pred EECCcCCCCCCccchhccCCHHHHHHcCCCEEEECHHHcCCCC
Confidence 999997431 577788999999999999998665
|
| >1sfl_A 3-dehydroquinate dehydratase; 3-dehydroquinase, enzyme turnover, shikimate pathway, lyase; 1.90A {Staphylococcus aureus subsp} SCOP: c.1.10.1 PDB: 1sfj_A* | Back alignment and structure |
|---|
Probab=96.35 E-value=0.13 Score=45.37 Aligned_cols=97 Identities=11% Similarity=0.101 Sum_probs=64.3
Q ss_pred cEEEEecC-CCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC-CCcEEEEecc
Q 020423 126 PIVLQIGG-SNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCRI 203 (326)
Q Consensus 126 piivQL~g-~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~-~~pv~vK~r~ 203 (326)
++++-|.+ .+.++..+.++.+.+.|+|.||+-... |.. .+.+.+.+.+..+|+.. +.|+.+-+|.
T Consensus 5 ~Icvpi~~~~~~~e~~~~~~~~~~~~~D~vElRvD~----------l~~---~~~~~v~~~~~~lr~~~~~~PiI~T~R~ 71 (238)
T 1sfl_A 5 EVVATITPQLSIEETLIQKINHRIDAIDVLELRIDQ----------FEN---VTVDQVAEMITKLKVMQDSFKLLVTYRT 71 (238)
T ss_dssp EEEEEECCCC---CHHHHHHHHTTTTCSEEEEECTT----------STT---CCHHHHHHHHHHHC---CCSEEEEECCB
T ss_pred eEEEEecCCCCHHHHHHHHHHhhhcCCCEEEEEecc----------ccc---CCHHHHHHHHHHHHHhccCCCEEEEeec
Confidence 57889999 899998888988999999999996532 211 13678889999998877 7899998886
Q ss_pred CCCCC---ccHHHHHHHHHHHhhhCCccEEEEecC
Q 020423 204 GVDDH---DSYNQLCDFIYKVSSLSPTRHFIIHSR 235 (326)
Q Consensus 204 g~~~~---~~~~e~~~~ia~~le~~Gvd~I~v~~~ 235 (326)
.++.. .+-++-.+.+...++..++|+|+|.-.
T Consensus 72 ~~eGG~~~~~~~~~~~ll~~~~~~~~~d~iDvEl~ 106 (238)
T 1sfl_A 72 KLQGGYGQFTNDSYLNLISDLANINGIDMIDIEWQ 106 (238)
T ss_dssp GGGTSCBCCCHHHHHHHHHHGGGCTTCCEEEEECC
T ss_pred cccCCCCCCCHHHHHHHHHHHHHhCCCCEEEEEcc
Confidence 43321 123333444455554447999999743
|
| >2ze3_A DFA0005; organic waste LEFT-OVER decomposition, alkaliphilic, ICL/PEPM superfamily, alpha-ketoglutarate LIG isomerase; HET: AKG; 1.65A {Deinococcus ficus} | Back alignment and structure |
|---|
Probab=96.31 E-value=0.068 Score=48.23 Aligned_cols=191 Identities=15% Similarity=0.070 Sum_probs=113.7
Q ss_pred CCChHHHHHHHHHcCCCcEEEecce-eecccccccc---chhhhhh----c-CCCCCcEEEEe---cCCCHHHHHHHHHH
Q 020423 78 DWTDNHYRTLARLISKHAWLYTEML-AAETIIYQQG---NLDRFLA----F-SPEQHPIVLQI---GGSNLDNLAKATEL 145 (326)
Q Consensus 78 ~~s~~~~r~~~~~~Gg~gli~te~~-~~~~~~~~~~---~~~~~~~----~-~~~~~piivQL---~g~~~~~f~~aA~~ 145 (326)
+.-|.....++.+.| +..+++... ....+.+.+. ..+..+. + ...+.|+++-+ +|.++++..+.+++
T Consensus 22 ~a~D~~sA~~~~~aG-~~ai~vsg~s~a~~~G~pD~~~vt~~em~~~~~~I~~~~~~pviaD~d~Gyg~~~~~~~~~v~~ 100 (275)
T 2ze3_A 22 NAWDVASARLLEAAG-FTAIGTTSAGIAHARGRTDGQTLTRDEMGREVEAIVRAVAIPVNADIEAGYGHAPEDVRRTVEH 100 (275)
T ss_dssp EESSHHHHHHHHHHT-CSCEEECHHHHHHHSCCCSSSSSCHHHHHHHHHHHHHHCSSCEEEECTTCSSSSHHHHHHHHHH
T ss_pred cccCHHHHHHHHHcC-CCEEEECcHHHHHhCCCCCCCCCCHHHHHHHHHHHHhhcCCCEEeecCCCCCCCHHHHHHHHHH
Confidence 445566666655555 777776631 1112222221 1112111 1 22346888886 34578999999999
Q ss_pred HHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhc---CCCcEEEEeccCCCCC-------ccHHHHH
Q 020423 146 ANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAAN---TNVPVSVKCRIGVDDH-------DSYNQLC 215 (326)
Q Consensus 146 a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~---~~~pv~vK~r~g~~~~-------~~~~e~~ 215 (326)
+.++|+++|.|--+.... |..+ -..+...+-|++++++ .+.|+.+--|...... +..++.+
T Consensus 101 l~~aGaagv~iED~~~~~--------~k~l-~~~~e~~~~I~aa~~a~~~~g~~~~i~aRtda~~~~~g~~~~~~~~~ai 171 (275)
T 2ze3_A 101 FAALGVAGVNLEDATGLT--------PTEL-YDLDSQLRRIEAARAAIDASGVPVFLNARTDTFLKGHGATDEERLAETV 171 (275)
T ss_dssp HHHTTCSEEEEECBCSSS--------SSCB-CCHHHHHHHHHHHHHHHHHHTSCCEEEEECCTTTTTCSSSHHHHHHHHH
T ss_pred HHHcCCcEEEECCCcCCC--------CCcc-CCHHHHHHHHHHHHHhHhhcCCCeEEEEechhhhccccccchhhHHHHH
Confidence 999999999997543210 2233 3445555555665554 2677766656532111 1356666
Q ss_pred HHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCC--CCCHHHHHHHHHhCCChh
Q 020423 216 DFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGG--INTVDEVNAALRKGAHHV 293 (326)
Q Consensus 216 ~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~Gg--I~s~~da~~~l~~GaD~V 293 (326)
+. ++.++++|+|.|.+++.. ..+.++++.+.. ++|+-.+.+ ..+ ..++-+.|+..|
T Consensus 172 ~R-a~ay~eAGAd~i~~e~~~-----------------~~~~~~~i~~~~-~~P~n~~~~~~~~~---~~eL~~lGv~~v 229 (275)
T 2ze3_A 172 RR-GQAYADAGADGIFVPLAL-----------------QSQDIRALADAL-RVPLNVMAFPGSPV---PRALLDAGAARV 229 (275)
T ss_dssp HH-HHHHHHTTCSEEECTTCC-----------------CHHHHHHHHHHC-SSCEEEECCTTSCC---HHHHHHTTCSEE
T ss_pred HH-HHHHHHCCCCEEEECCCC-----------------CHHHHHHHHHhc-CCCEEEecCCCCCC---HHHHHHcCCcEE
Confidence 54 346678999999887531 145666777775 799866643 333 456777899999
Q ss_pred hhhHHHH
Q 020423 294 MVGRAAY 300 (326)
Q Consensus 294 ~iGRall 300 (326)
..+-.++
T Consensus 230 ~~~~~~~ 236 (275)
T 2ze3_A 230 SFGQSLM 236 (275)
T ss_dssp ECTTHHH
T ss_pred EEChHHH
Confidence 8887765
|
| >1wuf_A Hypothetical protein LIN2664; structural genomics, unknown function, nysgxrc target T2186, superfamily, protein structure initiative, PSI; 2.90A {Listeria innocua} SCOP: c.1.11.2 d.54.1.1 | Back alignment and structure |
|---|
Probab=96.30 E-value=0.011 Score=56.23 Aligned_cols=120 Identities=12% Similarity=0.168 Sum_probs=81.4
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC-CCcEEEEeccCCCCCccHH
Q 020423 134 SNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYN 212 (326)
Q Consensus 134 ~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~-~~pv~vK~r~g~~~~~~~~ 212 (326)
.+++++.+.++++.+.||+.+.+..+ |. .+ .+.+++||+.+ +..+.+-...+|+ .+
T Consensus 160 ~~~e~~~~~a~~~~~~G~~~~KiKvg-~~--------------~d----~~~v~avr~a~~~~~l~vDaN~~~~----~~ 216 (393)
T 1wuf_A 160 QNVETLLQLVNQYVDQGYERVKLKIA-PN--------------KD----IQFVEAVRKSFPKLSLMADANSAYN----RE 216 (393)
T ss_dssp SCHHHHHHHHHHHHHHTCCEEEEECB-TT--------------BS----HHHHHHHHTTCTTSEEEEECTTCCC----GG
T ss_pred CCHHHHHHHHHHHHHHhhHhheeccC-hH--------------HH----HHHHHHHHHHcCCCEEEEECCCCCC----HH
Confidence 36899999898888889999999754 10 12 35577888776 3344444443443 23
Q ss_pred HHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhC-CC
Q 020423 213 QLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKG-AH 291 (326)
Q Consensus 213 e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~G-aD 291 (326)
+. + +.+.+++.++.+|. . ..++.+++.++++.++. ++||.+.-.+.+.+++.++++.| +|
T Consensus 217 ~a-~-~~~~l~~~~i~~iE----q------------P~~~~d~~~~~~l~~~~-~ipIa~dE~~~~~~~~~~~i~~~a~d 277 (393)
T 1wuf_A 217 DF-L-LLKELDQYDLEMIE----Q------------PFGTKDFVDHAWLQKQL-KTRICLDENIRSVKDVEQAHSIGSCR 277 (393)
T ss_dssp GH-H-HHHTTGGGTCSEEE----C------------CSCSSCSHHHHHHHTTC-SSEEEECTTCCSHHHHHHHHHHTCCS
T ss_pred HH-H-HHHHHHhCCCeEEE----C------------CCCCcCHHHHHHHHHhC-CCCEEECCCcCCHHHHHHHHHhCCCC
Confidence 33 4 34567888888885 1 11233466677776654 89999988899999999999866 67
Q ss_pred hhhh
Q 020423 292 HVMV 295 (326)
Q Consensus 292 ~V~i 295 (326)
.|++
T Consensus 278 ~v~i 281 (393)
T 1wuf_A 278 AINL 281 (393)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 7765
|
| >3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=96.30 E-value=0.091 Score=46.01 Aligned_cols=117 Identities=12% Similarity=0.089 Sum_probs=76.0
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCC-----Cc
Q 020423 135 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDD-----HD 209 (326)
Q Consensus 135 ~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~-----~~ 209 (326)
+++...+.|+.+.++|+.+|.++ + .+.++++|+.++.|+.-..+..+.+ ..
T Consensus 34 ~~~~~~~~A~a~~~~Ga~~i~~~--------------~----------~~~i~~ir~~v~~Pvig~~k~~~~~~~~~I~~ 89 (229)
T 3q58_A 34 KPEIVAAMAQAAASAGAVAVRIE--------------G----------IENLRTVRPHLSVPIIGIIKRDLTGSPVRITP 89 (229)
T ss_dssp SHHHHHHHHHHHHHTTCSEEEEE--------------S----------HHHHHHHGGGCCSCEEEECBCCCSSCCCCBSC
T ss_pred CcchHHHHHHHHHHCCCcEEEEC--------------C----------HHHHHHHHHhcCCCEEEEEeecCCCCceEeCc
Confidence 47889999999999999999872 0 2457888999999986433332111 12
Q ss_pred cHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhC
Q 020423 210 SYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKG 289 (326)
Q Consensus 210 ~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~G 289 (326)
+.++. ..+ .++|+|.|.+...... . +....+++..+ ++. ++++++ ++.+.+++.++.+.|
T Consensus 90 ~~~~i----~~~-~~aGad~I~l~~~~~~----~-------p~~l~~~i~~~-~~~-g~~v~~--~v~t~eea~~a~~~G 149 (229)
T 3q58_A 90 YLQDV----DAL-AQAGADIIAFDASFRS----R-------PVDIDSLLTRI-RLH-GLLAMA--DCSTVNEGISCHQKG 149 (229)
T ss_dssp SHHHH----HHH-HHHTCSEEEEECCSSC----C-------SSCHHHHHHHH-HHT-TCEEEE--ECSSHHHHHHHHHTT
T ss_pred cHHHH----HHH-HHcCCCEEEECccccC----C-------hHHHHHHHHHH-HHC-CCEEEE--ecCCHHHHHHHHhCC
Confidence 23332 222 3589999987653210 0 11113444444 343 677665 688999999999999
Q ss_pred CChhhh
Q 020423 290 AHHVMV 295 (326)
Q Consensus 290 aD~V~i 295 (326)
+|.|.+
T Consensus 150 ad~Ig~ 155 (229)
T 3q58_A 150 IEFIGT 155 (229)
T ss_dssp CSEEEC
T ss_pred CCEEEe
Confidence 999954
|
| >3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=96.29 E-value=0.017 Score=54.19 Aligned_cols=95 Identities=12% Similarity=0.151 Sum_probs=66.3
Q ss_pred CHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHH
Q 020423 178 DPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEY 257 (326)
Q Consensus 178 r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~ 257 (326)
.++...+.++.+++....|+.+-+... . .+. ++.+.++|+|.|+++... |. +....+.
T Consensus 79 s~e~~~~~I~~vk~~~~~pvga~ig~~--~----~e~----a~~l~eaGad~I~ld~a~----G~--------~~~~~~~ 136 (361)
T 3khj_A 79 DMESQVNEVLKVKNSGGLRVGAAIGVN--E----IER----AKLLVEAGVDVIVLDSAH----GH--------SLNIIRT 136 (361)
T ss_dssp CHHHHHHHHHHHHHTTCCCCEEEECTT--C----HHH----HHHHHHTTCSEEEECCSC----CS--------BHHHHHH
T ss_pred CHHHHHHHHHHHHhccCceEEEEeCCC--H----HHH----HHHHHHcCcCeEEEeCCC----CC--------cHHHHHH
Confidence 366677888888887778888776442 2 122 223446899999986432 10 1112456
Q ss_pred HHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhh
Q 020423 258 YYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVG 296 (326)
Q Consensus 258 i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iG 296 (326)
+.++++.+ ++||++ |.+.+++++.++.+.|||+|.+|
T Consensus 137 i~~i~~~~-~~~Viv-g~v~t~e~A~~l~~aGaD~I~VG 173 (361)
T 3khj_A 137 LKEIKSKM-NIDVIV-GNVVTEEATKELIENGADGIKVG 173 (361)
T ss_dssp HHHHHHHC-CCEEEE-EEECSHHHHHHHHHTTCSEEEEC
T ss_pred HHHHHHhc-CCcEEE-ccCCCHHHHHHHHHcCcCEEEEe
Confidence 67777666 899887 66789999999999999999985
|
| >2yr1_A 3-dehydroquinate dehydratase; amino acid biosynthesis, 3-dehydroquinase, structural genomi NPPSFA; 2.00A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=96.29 E-value=0.53 Score=41.84 Aligned_cols=97 Identities=10% Similarity=0.022 Sum_probs=69.2
Q ss_pred CcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC-CCcEEEEecc
Q 020423 125 HPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCRI 203 (326)
Q Consensus 125 ~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~-~~pv~vK~r~ 203 (326)
.++++.|.+.+.++....++.+.+.|+|.||+-...-.. ..+.+.+.+.+..+|+.. +.|+.+-+|.
T Consensus 20 p~Icv~l~~~~~~e~~~~~~~~~~~~~D~vElRvD~l~~------------~~~~~~v~~~l~~lr~~~~~~PiI~T~Rt 87 (257)
T 2yr1_A 20 PCICAPVVGEDDRKVLREAEEVCRKQPDLLEWRADFFRA------------IDDQERVLATANGLRNIAGEIPILFTIRS 87 (257)
T ss_dssp CEEEEEECCSSHHHHHHHHHHHHHSCCSEEEEEGGGCTT------------TTCHHHHHHHHHHHHHHSSSCCEEEECCC
T ss_pred cEEEEEecCCCHHHHHHHHHHHhhcCCCEEEEEeecccc------------cCcHHHHHHHHHHHHHhccCCCEEEEEee
Confidence 358899999999999888998999999999996532110 124678889999999887 7899999887
Q ss_pred CCCCC----ccHHHHHHHHHHHhhhCC-ccEEEEec
Q 020423 204 GVDDH----DSYNQLCDFIYKVSSLSP-TRHFIIHS 234 (326)
Q Consensus 204 g~~~~----~~~~e~~~~ia~~le~~G-vd~I~v~~ 234 (326)
.++.. .+.++-.+.+...++ .| +|+|+|.-
T Consensus 88 ~~eGG~~~~~~~~~~~~ll~~~~~-~g~~d~iDvEl 122 (257)
T 2yr1_A 88 EREGGQPIPLNEAEVRRLIEAICR-SGAIDLVDYEL 122 (257)
T ss_dssp TTTTCCCCSSCHHHHHHHHHHHHH-HTCCSEEEEEG
T ss_pred cccCCCCCCCCHHHHHHHHHHHHH-cCCCCEEEEEC
Confidence 54321 122333344444444 56 99999964
|
| >4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A | Back alignment and structure |
|---|
Probab=96.23 E-value=0.016 Score=54.45 Aligned_cols=98 Identities=15% Similarity=0.199 Sum_probs=63.2
Q ss_pred CHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHH
Q 020423 178 DPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEY 257 (326)
Q Consensus 178 r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~ 257 (326)
.++...+.++.+|+.-..++.+- .+... .. .+. ++.+.++|+|.|+++... |. ++...+.
T Consensus 80 s~e~~~~~i~~vk~~~~l~vga~--vg~~~-~~-~~~----~~~lieaGvd~I~idta~----G~--------~~~~~~~ 139 (366)
T 4fo4_A 80 SIEQQAAQVHQVKISGGLRVGAA--VGAAP-GN-EER----VKALVEAGVDVLLIDSSH----GH--------SEGVLQR 139 (366)
T ss_dssp CHHHHHHHHHHHHTTTSCCCEEE--CCSCT-TC-HHH----HHHHHHTTCSEEEEECSC----TT--------SHHHHHH
T ss_pred CHHHHHHHHHHHHhcCceeEEEE--eccCh-hH-HHH----HHHHHhCCCCEEEEeCCC----CC--------CHHHHHH
Confidence 36777788888877533444443 23221 11 122 223446899999986421 11 1112456
Q ss_pred HHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhh
Q 020423 258 YYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVG 296 (326)
Q Consensus 258 i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iG 296 (326)
++++++.++++||++ |.+.|++++.++.+.|||+|.+|
T Consensus 140 I~~ik~~~p~v~Vi~-G~v~t~e~A~~a~~aGAD~I~vG 177 (366)
T 4fo4_A 140 IRETRAAYPHLEIIG-GNVATAEGARALIEAGVSAVKVG 177 (366)
T ss_dssp HHHHHHHCTTCEEEE-EEECSHHHHHHHHHHTCSEEEEC
T ss_pred HHHHHHhcCCCceEe-eeeCCHHHHHHHHHcCCCEEEEe
Confidence 777777777888876 67889999999999999999984
|
| >2jbm_A Nicotinate-nucleotide pyrophosphorylase; NAD, enzyme, metabolism, transferase, polymorphism, glycosyltransferase, pyridine nucleotide biosynthesis; HET: SRT; 2.0A {Homo sapiens} PDB: 3lar_A | Back alignment and structure |
|---|
Probab=96.18 E-value=0.0071 Score=55.41 Aligned_cols=94 Identities=17% Similarity=0.243 Sum_probs=60.4
Q ss_pred HHHHHHHHhcCC--CcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHH-HH
Q 020423 183 GEAMSVIAANTN--VPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEY-YY 259 (326)
Q Consensus 183 ~eiv~avr~~~~--~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~-i~ 259 (326)
.+-++++|+..+ .++.+- .+++++..+ .+ ++|+|+|-++... +..... +.
T Consensus 184 ~~ai~~~r~~~~~~~~i~ve-------v~tlee~~~----A~-~aGaD~I~ld~~~---------------~~~l~~~v~ 236 (299)
T 2jbm_A 184 EKAVRAARQAADFALKVEVE-------CSSLQEAVQ----AA-EAGADLVLLDNFK---------------PEELHPTAT 236 (299)
T ss_dssp HHHHHHHHHHHTTTSCEEEE-------ESSHHHHHH----HH-HTTCSEEEEESCC---------------HHHHHHHHH
T ss_pred HHHHHHHHHhCCcCCeEEEe-------cCCHHHHHH----HH-HcCCCEEEECCCC---------------HHHHHHHHH
Confidence 455666666654 344442 123444433 22 4899999886421 111222 22
Q ss_pred HHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhCCc
Q 020423 260 ALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW 304 (326)
Q Consensus 260 ~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~dP~ 304 (326)
.+...++++||.++||| +.+.+.++.+.|+|.+.+|+.....|+
T Consensus 237 ~l~~~~~~~~I~ASGGI-t~~ni~~~~~aGaD~i~vGs~i~~a~~ 280 (299)
T 2jbm_A 237 VLKAQFPSVAVEASGGI-TLDNLPQFCGPHIDVISMGMLTQAAPA 280 (299)
T ss_dssp HHHHHCTTSEEEEESSC-CTTTHHHHCCTTCCEEECTHHHHSCCC
T ss_pred HhhccCCCeeEEEECCC-CHHHHHHHHHCCCCEEEEChhhcCCCC
Confidence 22223567999999999 999999999999999999997765555
|
| >1dbt_A Orotidine 5'-phosphate decarboxylase; UMP, TIM barrel, lyase; HET: U5P; 2.40A {Bacillus subtilis} SCOP: c.1.2.3 | Back alignment and structure |
|---|
Probab=96.17 E-value=0.12 Score=45.41 Aligned_cols=143 Identities=17% Similarity=0.147 Sum_probs=81.9
Q ss_pred CCcEEEEec-CCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC--CC--c--
Q 020423 124 QHPIVLQIG-GSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NV--P-- 196 (326)
Q Consensus 124 ~~piivQL~-g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~--~~--p-- 196 (326)
+.++++-+. +..++....+++.+.++|+|.|.+|. |+| .+.+...++.+++.. |. |
T Consensus 54 ~~~v~lD~kl~Dip~t~~~~~~~~~~~Gad~vtvH~------------~~g-----~~~l~~~~~~~~~~~~~g~~~~~~ 116 (239)
T 1dbt_A 54 NCELFLDLKLHDIPTTVNKAMKRLASLGVDLVNVHA------------AGG-----KKMMQAALEGLEEGTPAGKKRPSL 116 (239)
T ss_dssp TCEEEEEEEECSCHHHHHHHHHHHHTTTCSEEEEEG------------GGC-----HHHHHHHHHHHHHHSCTTSCCCEE
T ss_pred CCcEEEEeccccchHHHHHHHHHHHhcCCCEEEEeC------------cCC-----HHHHHHHHHHHHhhhccCCCCccE
Confidence 455655543 35567666677888899999999995 121 233456666666541 43 4
Q ss_pred EEEEeccCCC--CC-----c--cHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCC
Q 020423 197 VSVKCRIGVD--DH-----D--SYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPD 267 (326)
Q Consensus 197 v~vK~r~g~~--~~-----~--~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~ 267 (326)
+.|-+..+.+ .. . +..+.+..++....+.|.+.+..+. +.+.++++...+
T Consensus 117 ~~V~~~ts~~~~~l~~~~~~~~~~~d~Vl~ma~~~~~~G~~g~v~~~---------------------~~i~~lr~~~~~ 175 (239)
T 1dbt_A 117 IAVTQLTSTSEQIMKDELLIEKSLIDTVVHYSKQAEESGLDGVVCSV---------------------HEAKAIYQAVSP 175 (239)
T ss_dssp EEECSCTTCCHHHHHHTSCBCSCHHHHHHHHHHHHHHTTCSEEECCG---------------------GGHHHHTTTSCT
T ss_pred EEEEEcCCCCHHHHHHHhccCCCHHHHHHHHHHHHHHhCCCEEEECH---------------------HHHHHHHHhcCC
Confidence 3443322221 00 0 1122222222223456776654332 112333333334
Q ss_pred ceEEEeCCCCCHHH----------HHHHHHhCCChhhhhHHHHhCCc
Q 020423 268 LTFTLNGGINTVDE----------VNAALRKGAHHVMVGRAAYQNPW 304 (326)
Q Consensus 268 iPVIa~GgI~s~~d----------a~~~l~~GaD~V~iGRall~dP~ 304 (326)
.+++..|||+.... ..++++.|+|.+.+||+++..++
T Consensus 176 ~~i~v~gGI~~~~~~~~dq~rv~tp~~a~~aGad~iVvGr~I~~a~d 222 (239)
T 1dbt_A 176 SFLTVTPGIRMSEDAANDQVRVATPAIAREKGSSAIVVGRSITKAED 222 (239)
T ss_dssp TCEEEECCBCCTTSCCTTCSSCBCHHHHHHTTCSEEEECHHHHTSSC
T ss_pred CcEEEeCCcCCCCCCccceeccCCHHHHHHcCCCEEEEChhhcCCCC
Confidence 68999999974322 26788999999999999998655
|
| >3exr_A RMPD (hexulose-6-phosphate synthase); beta barrel, lyase; 1.70A {Streptococcus mutans} SCOP: c.1.2.3 PDB: 3exs_A* 3ext_A | Back alignment and structure |
|---|
Probab=96.12 E-value=0.032 Score=48.70 Aligned_cols=144 Identities=15% Similarity=0.113 Sum_probs=83.5
Q ss_pred CCcEEEEec-CCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEec
Q 020423 124 QHPIVLQIG-GSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCR 202 (326)
Q Consensus 124 ~~piivQL~-g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r 202 (326)
+.++++-+. +..|+.+.++ +.++|+|.+.+|.... .+-+.+.++.+++.-..|..+-+.
T Consensus 58 ~~~iflDlKl~Dip~t~~~~---~~~~Gad~vtVH~~~g-----------------~~~l~~a~~~~~~~g~~~~~~~Vt 117 (221)
T 3exr_A 58 DKIIVADTKCADAGGTVAKN---NAVRGADWMTCICSAT-----------------IPTMKAARKAIEDINPDKGEIQVE 117 (221)
T ss_dssp TSEEEEEEEECSCHHHHHHH---HHTTTCSEEEEETTSC-----------------HHHHHHHHHHHHHHCTTTCEEEEE
T ss_pred CCcEEEEEEeeccHHHHHHH---HHHcCCCEEEEeccCC-----------------HHHHHHHHHHHHhcCCCcceEEEE
Confidence 456666653 3567777765 5789999999996311 233555666665532223333333
Q ss_pred cCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCc-ccCCCCcCCcCCCCCccHHHHHHHHhcC-CCceEEEeCCCCCHH
Q 020423 203 IGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKA-LLNGISPAENRTIPPLKYEYYYALLRDF-PDLTFTLNGGINTVD 280 (326)
Q Consensus 203 ~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~-~~~g~~~~~~~~~~~~~~~~i~~i~~~~-~~iPVIa~GgI~s~~ 280 (326)
..... +.+++. .+ .+.|++.+.++-... ...|. +. ..+.+..+++.. .+++|...||| +++
T Consensus 118 ~lts~--~~~~~~----~~-~~~~~~~~v~~~a~~~~~~Gv-------v~--s~~e~~~ir~~~~~~~~i~v~gGI-~~~ 180 (221)
T 3exr_A 118 LYGDW--TYDQAQ----QW-LDAGISQAIYHQSRDALLAGE-------TW--GEKDLNKVKKLIEMGFRVSVTGGL-SVD 180 (221)
T ss_dssp CCSSC--CHHHHH----HH-HHTTCCEEEEECCHHHHHHTC-------CC--CHHHHHHHHHHHHHTCEEEEESSC-CGG
T ss_pred EcCCC--CHHHHH----HH-HcCCHHHHHHHHHHhcCCCcc-------cc--CHHHHHHHHHhhcCCceEEEECCC-CHH
Confidence 32111 222222 22 347899988874321 11121 11 122333333321 26889999999 677
Q ss_pred HHHHHHHhCCChhhhhHHHHhCCc
Q 020423 281 EVNAALRKGAHHVMVGRAAYQNPW 304 (326)
Q Consensus 281 da~~~l~~GaD~V~iGRall~dP~ 304 (326)
++.++.+.|||.+.+||++...++
T Consensus 181 ~~~~~~~aGad~~VvG~~I~~a~d 204 (221)
T 3exr_A 181 TLKLFEGVDVFTFIAGRGITEAKN 204 (221)
T ss_dssp GGGGGTTCCCSEEEECHHHHTSSS
T ss_pred HHHHHHHCCCCEEEECchhhCCCC
Confidence 888888899999999999996544
|
| >1hg3_A Triosephosphate isomerase; thermostability, tetrameric; 2.7A {Pyrococcus woesei} SCOP: c.1.1.1 | Back alignment and structure |
|---|
Probab=96.07 E-value=0.098 Score=45.75 Aligned_cols=141 Identities=12% Similarity=0.066 Sum_probs=82.2
Q ss_pred HHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHHHHh
Q 020423 143 TELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVS 222 (326)
Q Consensus 143 A~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia~~l 222 (326)
+..++++|+|+|-|..+. +| -.++ .+.+.++...+ .|....+- .+ +..|. +.+
T Consensus 81 ~~~l~~~Ga~~Vllghse-----RR-~~~~--------e~~~k~~~A~~-~GL~~ivc--Vg-----e~~e~-----~~~ 133 (225)
T 1hg3_A 81 PEAVKEAGAVGTLLNHSE-----NR-MILA--------DLEAAIRRAEE-VGLMTMVC--SN-----NPAVS-----AAV 133 (225)
T ss_dssp HHHHHHTTCCEEEESCGG-----GC-CBHH--------HHHHHHHHHHH-HTCEEEEE--ES-----SHHHH-----HHH
T ss_pred HHHHHHcCCCEEEECcch-----hc-CCHH--------HHHHHHHHHHH-CCCEEEEE--eC-----CHHHH-----HHH
Confidence 456888999999997532 22 2223 13344433322 25444442 22 11222 122
Q ss_pred hhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcC-CCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHh
Q 020423 223 SLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF-PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 301 (326)
Q Consensus 223 e~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~-~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~ 301 (326)
...+.+.|-+..++..-.|.+- ....+-..+...++++.. .+++|+..|||.+.+++..+.+.|+|++.||.+++.
T Consensus 134 ~~~~~~iIayep~waiGtG~~v---~t~~~d~~~~~~~~ir~~~~~~~ilyggsV~~~n~~~~~~~~~vDG~LVG~a~l~ 210 (225)
T 1hg3_A 134 AALNPDYVAVEPPELIGTGIPV---SKAKPEVITNTVELVKKVNPEVKVLCGAGISTGEDVKKAIELGTVGVLLASGVTK 210 (225)
T ss_dssp HTTCCSEEEECCTTTTTTSCCT---TTSCTHHHHHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHHTTCSEEEESHHHHT
T ss_pred hcCCCCEEEEeChhhhccCCCC---CCCChhHHHHHHHHHHhccCCCEEEEeCCCCcHHHHHHHHhCCCCEEEeCHHHHC
Confidence 3456677777766532112000 011111133333334433 368999999999999999999999999999999999
Q ss_pred CCchhHHhHHHhh
Q 020423 302 NPWYTLGHVDTAI 314 (326)
Q Consensus 302 dP~l~~~~i~~~~ 314 (326)
-++ |...+++.+
T Consensus 211 a~~-~~~~i~~l~ 222 (225)
T 1hg3_A 211 AKD-PEKAIWDLV 222 (225)
T ss_dssp CSS-HHHHHHHHH
T ss_pred CcC-HHHHHHHHH
Confidence 888 677776643
|
| >3u9i_A Mandelate racemase/muconate lactonizing enzyme, C domain protein; structural genomics, PSI-biology; 2.90A {Roseiflexus SP} | Back alignment and structure |
|---|
Probab=96.07 E-value=0.03 Score=53.18 Aligned_cols=137 Identities=9% Similarity=0.023 Sum_probs=84.9
Q ss_pred ecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCcc
Q 020423 131 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDS 210 (326)
Q Consensus 131 L~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~ 210 (326)
+...+++++++.++.+.+.||..+-+..|.+.... +. . ..++.-.+.+++||++++ .+ +++......-+
T Consensus 161 ~~~~~~e~~~~~a~~~~~~Gf~~iKlKvg~~~~~~---~~-~----~~~~~di~~v~avR~a~~-d~--~L~vDaN~~w~ 229 (393)
T 3u9i_A 161 ITTGSVTAAARAAQAIVARGVTTIKIKIGAGDPDA---TT-I----RTMEHDLARIVAIRDVAP-TA--RLILDGNCGYT 229 (393)
T ss_dssp EC---CHHHHHHHHHHHTTTCCEEEEECC----------C-H----HHHHHHHHHHHHHHHHST-TS--EEEEECCSCCC
T ss_pred ecCCCHHHHHHHHHHHHHcCCCeEEEEeCCCcccc---cc-c----ccHHHHHHHHHHHHHHCC-CC--eEEEEccCCCC
Confidence 34457889999999999999999999887543110 00 1 225556677888888873 22 33333222234
Q ss_pred HHHHHHHHHHHh--hhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHh
Q 020423 211 YNQLCDFIYKVS--SLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRK 288 (326)
Q Consensus 211 ~~e~~~~ia~~l--e~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~ 288 (326)
.++..+ +.+.+ ++.++.+|. . ..++.+++.++++.+.. .+||.+.=.+.+..++.++++.
T Consensus 230 ~~~A~~-~~~~L~~~~~~i~~iE----e------------P~~~~d~~~~~~l~~~~-~iPIa~dE~~~~~~~~~~~i~~ 291 (393)
T 3u9i_A 230 APDALR-LLDMLGVHGIVPALFE----Q------------PVAKDDEEGLRRLTATR-RVPVAADESVASATDAARLARN 291 (393)
T ss_dssp HHHHHH-HHHTTTTTTCCCSEEE----C------------CSCTTCTTHHHHHHHTC-SSCEEESTTCCSHHHHHHHHHT
T ss_pred HHHHHH-HHHHHhhCCCCeEEEE----C------------CCCCCcHHHHHHHHhhC-CCcEEeCCcCCCHHHHHHHHHc
Confidence 555555 34566 566777774 1 12233456666776664 8999888889999999999986
Q ss_pred C-CChhhhh
Q 020423 289 G-AHHVMVG 296 (326)
Q Consensus 289 G-aD~V~iG 296 (326)
| +|.|++=
T Consensus 292 ~a~d~i~~k 300 (393)
T 3u9i_A 292 AAVDVLNIK 300 (393)
T ss_dssp TCCSEEEEC
T ss_pred CCCCEEEec
Confidence 5 8877653
|
| >3ldv_A Orotidine 5'-phosphate decarboxylase; structural genomics, infectious diseases; 1.77A {Vibrio cholerae o1 biovar el tor} PDB: 3uwq_A* | Back alignment and structure |
|---|
Probab=96.05 E-value=0.3 Score=43.46 Aligned_cols=144 Identities=10% Similarity=0.126 Sum_probs=83.2
Q ss_pred CCCcEEEEec-CCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhc-CCCcEEEE
Q 020423 123 EQHPIVLQIG-GSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAAN-TNVPVSVK 200 (326)
Q Consensus 123 ~~~piivQL~-g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~-~~~pv~vK 200 (326)
.+.++++-+- +.-+.....+++.+.++|+|.+.+|. ||| .+-+...++...+. .+.|..+-
T Consensus 77 ~g~~VflDlK~~DIpnTv~~a~~~~~~~gaD~vTVh~------------~~G-----~~~~~~a~~~~~~~g~~~~~li~ 139 (255)
T 3ldv_A 77 RGFSVFLDLKFHDIPNTCSKAVKAAAELGVWMVNVHA------------SGG-----ERMMAASREILEPYGKERPLLIG 139 (255)
T ss_dssp TTCCEEEEEEECSCHHHHHHHHHHHHHTTCSEEEEEG------------GGC-----HHHHHHHHHHHGGGGGGSCEEEE
T ss_pred cCCCEEEEEecccchhHHHHHHHHHHhcCCCEEEEec------------cCC-----HHHHHHHHHHHhhcCCCCceEEE
Confidence 4678888875 33466666777888899999999985 333 33444445544332 12343333
Q ss_pred eccC--CCC--------CccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceE
Q 020423 201 CRIG--VDD--------HDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTF 270 (326)
Q Consensus 201 ~r~g--~~~--------~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPV 270 (326)
+..- .++ ...+.+....+++...++|+|.+++++. .+..+++...+-.+
T Consensus 140 VtvLTS~s~~~l~~~g~~~~~~~~V~~~A~~a~~aG~~GvV~sa~---------------------e~~~iR~~~g~~fl 198 (255)
T 3ldv_A 140 VTVLTSMESADLQGIGILSAPQDHVLRLATLTKNAGLDGVVCSAQ---------------------EASLLKQHLGREFK 198 (255)
T ss_dssp ECSCTTCCHHHHHHTTCCSCHHHHHHHHHHHHHHTTCSEEECCHH---------------------HHHHHHHHHCTTSE
T ss_pred EEEEecCCHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCEEEECHH---------------------HHHHHHHhcCCCcE
Confidence 2221 111 0123333334555566789999986531 12233333333235
Q ss_pred EEeCCCCCHH----------HHHHHHHhCCChhhhhHHHHhCCc
Q 020423 271 TLNGGINTVD----------EVNAALRKGAHHVMVGRAAYQNPW 304 (326)
Q Consensus 271 Ia~GgI~s~~----------da~~~l~~GaD~V~iGRall~dP~ 304 (326)
+.+.||+-.. +..++++.|+|.+.+||+++..++
T Consensus 199 ~VtPGIr~qg~~~~dQ~Rv~t~~~a~~aGad~iVvGr~I~~a~d 242 (255)
T 3ldv_A 199 LVTPGIRPAGSEQGDQRRIMTPAQAIASGSDYLVIGRPITQAAH 242 (255)
T ss_dssp EEEECCCCTTSTTSSCSSSCCHHHHHHTTCSEEEECHHHHTCSC
T ss_pred EEeCCcccCcCCccceeccCCHHHHHHcCCCEEEECHHHhCCCC
Confidence 5666665321 145677899999999999998655
|
| >1oy0_A Ketopantoate hydroxymethyltransferase; domain swapping, structural genomics, PSI, protein structure initiative; 2.80A {Mycobacterium tuberculosis} SCOP: c.1.12.8 | Back alignment and structure |
|---|
Probab=95.98 E-value=0.054 Score=48.89 Aligned_cols=128 Identities=5% Similarity=0.011 Sum_probs=71.1
Q ss_pred hhhhcCCCCCcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCC
Q 020423 116 RFLAFSPEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNV 195 (326)
Q Consensus 116 ~~~~~~~~~~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~ 195 (326)
.+.+.+..+.|+ +-+...+ .-.|+.+.++|||.|=+ |.....+. -+|-..+.-..+.+...+++|++.++.
T Consensus 25 ~lr~~k~~g~~i-~~~tayD----a~sA~l~e~aG~d~ilv--GdSl~~~~--lG~~dt~~vTldemi~h~~aV~r~~~~ 95 (281)
T 1oy0_A 25 HLQRWKADGHKW-AMLTAYD----YSTARIFDEAGIPVLLV--GDSAANVV--YGYDTTVPISIDELIPLVRGVVRGAPH 95 (281)
T ss_dssp HHHHHHHHTCCE-EEEECCS----HHHHHHHHTTTCCEEEE--CTTHHHHT--TCCSSSSSCCGGGTHHHHHHHHHHCTT
T ss_pred HHHHHHhCCCcE-EEEeCcC----HHHHHHHHHcCCCEEEE--CHHHHHHH--cCCCCCCCCCHHHHHHHHHHHHhcCCC
Confidence 333344444444 3455566 44678888999999944 22111100 001111122344556667777777776
Q ss_pred cEEE-EeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEE
Q 020423 196 PVSV-KCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFT 271 (326)
Q Consensus 196 pv~v-K~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVI 271 (326)
|+.+ -+..|.. ..+.++..+...++++++|++.|.+.++.. ..+.++.+.+. .|||+
T Consensus 96 ~~vvaD~pfgsy-~~s~~~a~~na~rl~~eaGa~aVklEdg~e----------------~~~~I~al~~a--gIpV~ 153 (281)
T 1oy0_A 96 ALVVADLPFGSY-EAGPTAALAAATRFLKDGGAHAVKLEGGER----------------VAEQIACLTAA--GIPVM 153 (281)
T ss_dssp SEEEEECCTTSS-TTCHHHHHHHHHHHHHTTCCSEEEEEBSGG----------------GHHHHHHHHHH--TCCEE
T ss_pred CeEEEECCCCcc-cCCHHHHHHHHHHHHHHhCCeEEEECCcHH----------------HHHHHHHHHHC--CCCEE
Confidence 6554 4444321 124566656567778889999999987521 13455555544 68887
|
| >3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0 | Back alignment and structure |
|---|
Probab=95.82 E-value=0.0093 Score=53.84 Aligned_cols=74 Identities=14% Similarity=0.058 Sum_probs=57.6
Q ss_pred HHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhH
Q 020423 218 IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGR 297 (326)
Q Consensus 218 ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGR 297 (326)
+++.++++|+++|+|-.-..+.+| ..+.+.++++. +++||+.-+.|.++.++.++...|||+|.++.
T Consensus 84 ~A~~y~~~GA~~IsVltd~~~f~G------------s~~~L~~ir~~-v~lPVl~Kdfi~d~~qi~ea~~~GAD~VlLi~ 150 (272)
T 3tsm_A 84 LAKAYEEGGAACLSVLTDTPSFQG------------APEFLTAARQA-CSLPALRKDFLFDPYQVYEARSWGADCILIIM 150 (272)
T ss_dssp HHHHHHHTTCSEEEEECCSTTTCC------------CHHHHHHHHHT-SSSCEEEESCCCSTHHHHHHHHTTCSEEEEET
T ss_pred HHHHHHHCCCCEEEEeccccccCC------------CHHHHHHHHHh-cCCCEEECCccCCHHHHHHHHHcCCCEEEEcc
Confidence 466778899999998754332222 36667777655 59999999999999999999999999999998
Q ss_pred HHHhCCc
Q 020423 298 AAYQNPW 304 (326)
Q Consensus 298 all~dP~ 304 (326)
+.+.+..
T Consensus 151 a~L~~~~ 157 (272)
T 3tsm_A 151 ASVDDDL 157 (272)
T ss_dssp TTSCHHH
T ss_pred cccCHHH
Confidence 8775433
|
| >2ozt_A TLR1174 protein; structural genomics, O-succinylbenzoate synthase, PSI, protein structure initiative; 1.42A {Synechococcus elongatus} PDB: 3h7v_A | Back alignment and structure |
|---|
Probab=95.78 E-value=0.13 Score=47.59 Aligned_cols=126 Identities=8% Similarity=0.108 Sum_probs=83.5
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHH
Q 020423 134 SNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQ 213 (326)
Q Consensus 134 ~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e 213 (326)
.+++++.+.++.+.+.||..+-+..|. ..++.-.+.+++||+.++..+.+.+-. ...-+.++
T Consensus 115 ~~~e~~~~~a~~~~~~G~~~~KiKvg~----------------~~~~~d~~~v~avr~~~g~~~~L~vDa--N~~~~~~~ 176 (332)
T 2ozt_A 115 GSGQAALEQWQQSWQRGQTTFKWKVGV----------------MSPEEEQAILKALLAALPPGAKLRLDA--NGSWDRAT 176 (332)
T ss_dssp CTGGGHHHHHHHHHHTTCCEEEEECSS----------------SCHHHHHHHHHHHHHHSCTTCEEEEEC--TTCCCHHH
T ss_pred CChHHHHHHHHHHHHcCCcEEEEEeCC----------------CChHHHHHHHHHHHHHcCCCCEEEEcc--cCCCCHHH
Confidence 467778888888888999999997541 124555678889998875433333222 12223455
Q ss_pred HHHHHHHHhhhC---CccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhC-
Q 020423 214 LCDFIYKVSSLS---PTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKG- 289 (326)
Q Consensus 214 ~~~~ia~~le~~---Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~G- 289 (326)
..+++ +.+++. ++.+|. . ..++.+++.++++.+.. ++||.+-=.+.+..++.++++.|
T Consensus 177 A~~~~-~~l~~~~~~~i~~iE----q------------P~~~~d~~~~~~l~~~~-~ipIa~dEs~~~~~~~~~~~~~~a 238 (332)
T 2ozt_A 177 ANRWF-AWLDRHGNGKIEYVE----Q------------PLPPDQWQALLSLAQTV-TTAIALDESVVSAAEVQRWVDRGW 238 (332)
T ss_dssp HHHHH-HHHHHHCCTTEEEEE----C------------CSCTTCHHHHHHHHHHC-SSCEEESTTCCSHHHHHHHHHTTC
T ss_pred HHHHH-HHHHhhccCCcceeE----C------------CCCCCCHHHHHHHHHhC-CCCEEeCCCCCCHHHHHHHHHhCC
Confidence 55543 445666 776663 1 12334577777777764 89999888899999999999976
Q ss_pred CChhhh
Q 020423 290 AHHVMV 295 (326)
Q Consensus 290 aD~V~i 295 (326)
+|.+++
T Consensus 239 ~~~i~i 244 (332)
T 2ozt_A 239 PGFFVI 244 (332)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 566554
|
| >3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A* | Back alignment and structure |
|---|
Probab=95.66 E-value=0.009 Score=53.95 Aligned_cols=74 Identities=9% Similarity=0.026 Sum_probs=57.7
Q ss_pred HHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhH
Q 020423 218 IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGR 297 (326)
Q Consensus 218 ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGR 297 (326)
+++.+++.|+++|+|..-..+.+ ...+.+.++++. +++||+.-+.|.++.++.++.+.|||+|.++-
T Consensus 77 ~A~~y~~~GA~~isvltd~~~f~------------Gs~~~l~~ir~~-v~lPvl~kdfiid~~qv~~A~~~GAD~VlLi~ 143 (272)
T 3qja_A 77 LAQAYQDGGARIVSVVTEQRRFQ------------GSLDDLDAVRAS-VSIPVLRKDFVVQPYQIHEARAHGADMLLLIV 143 (272)
T ss_dssp HHHHHHHTTCSEEEEECCGGGHH------------HHHHHHHHHHHH-CSSCEEEESCCCSHHHHHHHHHTTCSEEEEEG
T ss_pred HHHHHHHcCCCEEEEecChhhcC------------CCHHHHHHHHHh-CCCCEEECccccCHHHHHHHHHcCCCEEEEec
Confidence 56677889999999975433221 125667777666 49999999999999999999999999999987
Q ss_pred HHHhCCc
Q 020423 298 AAYQNPW 304 (326)
Q Consensus 298 all~dP~ 304 (326)
+.+.+..
T Consensus 144 a~l~~~~ 150 (272)
T 3qja_A 144 AALEQSV 150 (272)
T ss_dssp GGSCHHH
T ss_pred ccCCHHH
Confidence 7775544
|
| >4h1z_A Enolase Q92ZS5; dehydratase, magnesium binding site, enzyme function initiat isomerase; 2.01A {Sinorhizobium meliloti} PDB: 2ppg_A | Back alignment and structure |
|---|
Probab=95.65 E-value=0.27 Score=46.73 Aligned_cols=123 Identities=7% Similarity=0.031 Sum_probs=83.6
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCc--EEEEeccCCCCCccH
Q 020423 134 SNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVP--VSVKCRIGVDDHDSY 211 (326)
Q Consensus 134 ~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~p--v~vK~r~g~~~~~~~ 211 (326)
..+++.++.++...+.||..+-+..+... +...+.++++|++++.. +.+-...+| +.
T Consensus 187 ~~~~~~~~~a~~~~~~G~~~~K~k~g~~~-----------------~~~~~~v~~vR~~~g~~~~l~vDaN~~~----~~ 245 (412)
T 4h1z_A 187 DTRAKRAELAAAWQAKGFSSFKFASPVAD-----------------DGVAKEMEILRERLGPAVRIACDMHWAH----TA 245 (412)
T ss_dssp SSHHHHHHHHHHHHHTTCCEEEEEGGGCT-----------------TCHHHHHHHHHHHHCSSSEEEEECCSCC----CH
T ss_pred CcHHHHHHHHHHHHhcCcceeccccccch-----------------hhHHHHHHHHHhccCCeEEEEeccccCC----CH
Confidence 46788999999999999999998643211 11234567778776544 433333333 34
Q ss_pred HHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhC-C
Q 020423 212 NQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKG-A 290 (326)
Q Consensus 212 ~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~G-a 290 (326)
++..+ +.+.+++.|+.++. . ..++.+++.++++.+.. ++||.+.=.+.+..++.++++.+ +
T Consensus 246 ~~A~~-~~~~l~~~~l~~iE----q------------P~~~~d~~~~~~l~~~~-~iPIa~dE~~~~~~~~~~~i~~~a~ 307 (412)
T 4h1z_A 246 SEAVA-LIKAMEPHGLWFAE----A------------PVRTEDIDGLARVAASV-STAIAVGEEWRTVHDMVPRVARRAL 307 (412)
T ss_dssp HHHHH-HHHHHGGGCEEEEE----C------------CSCTTCHHHHHHHHHHC-SSEEEECTTCCSHHHHHHHHHTTCC
T ss_pred HHHHH-HHHhhcccccceec----C------------CCCccchHHHHHHHhhc-CCccccCCcccchHhHHHHHHcCCC
Confidence 55555 34567788887773 1 12334577788887775 89999888899999999999965 7
Q ss_pred Chhhh
Q 020423 291 HHVMV 295 (326)
Q Consensus 291 D~V~i 295 (326)
|.+++
T Consensus 308 div~~ 312 (412)
T 4h1z_A 308 AIVQP 312 (412)
T ss_dssp SEECC
T ss_pred CEEEe
Confidence 77764
|
| >1vkf_A Glycerol uptake operon antiterminator-related Pro; struc genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: CIT; 1.65A {Thermotoga maritima} SCOP: c.1.29.1 | Back alignment and structure |
|---|
Probab=95.65 E-value=0.0079 Score=51.08 Aligned_cols=40 Identities=18% Similarity=0.207 Sum_probs=34.2
Q ss_pred HhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhC
Q 020423 262 LRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN 302 (326)
Q Consensus 262 ~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~d 302 (326)
.++..++|||+.|+|++.|++.+ ++.|||+|.-++.-|.+
T Consensus 144 I~~v~~~PiIaGGlI~t~edv~~-l~aGA~aIsTs~~~LW~ 183 (188)
T 1vkf_A 144 ARKIPGRTVIAAGLVETEEEARE-ILKHVSAISTSSRILWK 183 (188)
T ss_dssp HTTSTTSEEEEESCCCSHHHHHH-HTTTSSEEEECCHHHHT
T ss_pred HHHhcCCCEEEECCcCCHHHHHH-HHCCCeEEEeCCHHHhC
Confidence 33336899999999999999999 99999999999776644
|
| >3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=95.59 E-value=0.015 Score=54.49 Aligned_cols=65 Identities=11% Similarity=0.046 Sum_probs=48.4
Q ss_pred HHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhh
Q 020423 219 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVG 296 (326)
Q Consensus 219 a~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iG 296 (326)
++.+.++|+|.|+++... |. +...++.+..+++..+++||++ |++.|++++..+.+.|||+|.+|
T Consensus 105 ~~~a~~aGvdvI~id~a~----G~--------~~~~~e~I~~ir~~~~~~~Vi~-G~V~T~e~A~~a~~aGaD~I~Vg 169 (361)
T 3r2g_A 105 AEALRDAGADFFCVDVAH----AH--------AKYVGKTLKSLRQLLGSRCIMA-GNVATYAGADYLASCGADIIKAG 169 (361)
T ss_dssp HHHHHHTTCCEEEEECSC----CS--------SHHHHHHHHHHHHHHTTCEEEE-EEECSHHHHHHHHHTTCSEEEEC
T ss_pred HHHHHHcCCCEEEEeCCC----CC--------cHhHHHHHHHHHHhcCCCeEEE-cCcCCHHHHHHHHHcCCCEEEEc
Confidence 344557899999997532 11 1122667777777666889887 67899999999999999999984
|
| >4dbe_A Orotidine 5'-phosphate decarboxylase; TIM barrel, orotidine 5'-monophosphate decarboxylase, inhibi lyase-lyase inhibitor complex; HET: BMP; 1.79A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=95.58 E-value=0.15 Score=44.42 Aligned_cols=141 Identities=13% Similarity=0.145 Sum_probs=80.6
Q ss_pred CC-cEEEEecCCC-HHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEe
Q 020423 124 QH-PIVLQIGGSN-LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKC 201 (326)
Q Consensus 124 ~~-piivQL~g~~-~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~ 201 (326)
+. ++++-+--.| +.....+++.+.+. |.+.+|..... . +-+...++..++ .+.-+.+=.
T Consensus 52 ~~~~VflDlK~~DI~nTv~~~~~~~~~~--d~vTVh~~~G~-----------~-----~~~~~a~~~~~~-~~~~v~vLt 112 (222)
T 4dbe_A 52 DVEEIIVDFKLADIGYIMKSIVERLSFA--NSFIAHSFIGV-----------K-----GSLDELKRYLDA-NSKNLYLVA 112 (222)
T ss_dssp CCSEEEEEEEECSCHHHHHHHHTTCTTC--SEEEEESTTCT-----------T-----TTHHHHHHHHHH-TTCEEEEEE
T ss_pred CCCeEEEEeeecchHHHHHHHHHHHHhC--CEEEEEcCcCc-----------H-----HHHHHHHHHHHh-cCCcEEEEE
Confidence 66 7888875344 45555555555555 99999853220 1 112223333322 233444433
Q ss_pred ccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHH-
Q 020423 202 RIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVD- 280 (326)
Q Consensus 202 r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~- 280 (326)
+.+.++..+. ....++++.+++|+|.+++++.. .+.+..+++..++ .++.++||+-..
T Consensus 113 s~s~~~~~~~--~~~~~a~~a~~~g~~GvV~sat~------------------p~e~~~ir~~~~~-~~~vtPGI~~~g~ 171 (222)
T 4dbe_A 113 VMSHEGWSTL--FADYIKNVIREISPKGIVVGGTK------------------LDHITQYRRDFEK-MTIVSPGMGSQGG 171 (222)
T ss_dssp ECSSTTCCCT--THHHHHHHHHHHCCSEEEECTTC------------------HHHHHHHHHHCTT-CEEEECCBSTTSB
T ss_pred eCCCcchHHH--HHHHHHHHHHHhCCCEEEECCCC------------------HHHHHHHHHhCCC-CEEEcCCcccCcc
Confidence 4432222111 01224556677899999876521 1334455555656 678889986431
Q ss_pred HHHHHHHhCCChhhhhHHHHhCCc
Q 020423 281 EVNAALRKGAHHVMVGRAAYQNPW 304 (326)
Q Consensus 281 da~~~l~~GaD~V~iGRall~dP~ 304 (326)
+..++++.|+|.+.|||+++.-++
T Consensus 172 tp~~a~~~Gad~iVVGR~I~~A~d 195 (222)
T 4dbe_A 172 SYGDAVCAGADYEIIGRSIYNAGN 195 (222)
T ss_dssp CTTHHHHHTCSEEEECHHHHTSSS
T ss_pred CHHHHHHcCCCEEEECHHhcCCCC
Confidence 466778899999999999997544
|
| >3s5s_A Mandelate racemase/muconate lactonizing enzyme FA protein; PSI-biology, structural genomics, NEW YORK structural genomi research consortium; 2.40A {Sorangium cellulosum} | Back alignment and structure |
|---|
Probab=95.56 E-value=0.082 Score=50.04 Aligned_cols=130 Identities=9% Similarity=0.063 Sum_probs=84.7
Q ss_pred EecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCc
Q 020423 130 QIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHD 209 (326)
Q Consensus 130 QL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~ 209 (326)
.+...+++++.+.++.+.+.||..+-+..|... ++.-.+.+++||+.++ .+ +++......-
T Consensus 139 t~~~~~~e~~~~~a~~~~~~G~~~iKlKvg~~~----------------~~~d~~~v~avR~~~~-~~--~L~vDaN~~w 199 (389)
T 3s5s_A 139 TITTGSPERAEEAARRAAAMGFRALKVKVGGRL----------------AASDPARIEAIHAAAP-GA--SLILDGNGGL 199 (389)
T ss_dssp EECSSCSHHHHHHHHHHHHHTCCEEEEECCGGG----------------TTTHHHHHHHHHHHCT-TC--EEEEECTTCS
T ss_pred eecCCCHHHHHHHHHHHHHcCCCeEEEEecCCC----------------hHHHHHHHHHHHHhCC-CC--eEEEECCCCC
Confidence 344567899999999888889999999765221 2223456777777763 22 3343333323
Q ss_pred cHHHHHHHHHHHh--hhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHH
Q 020423 210 SYNQLCDFIYKVS--SLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR 287 (326)
Q Consensus 210 ~~~e~~~~ia~~l--e~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~ 287 (326)
+.++..++ .+.+ ++.++.+|. . ..++.+++.++++.+.. .+||.+.=.+.+..++.++++
T Consensus 200 ~~~~A~~~-~~~L~~~~~~i~~iE----e------------P~~~~d~~~~~~l~~~~-~iPIa~dEs~~~~~~~~~~i~ 261 (389)
T 3s5s_A 200 TAGEALAL-VAHARRLGADVALLE----Q------------PVPRDDWDGMKEVTRRA-GVDVAADESAASAEDVLRVAA 261 (389)
T ss_dssp CHHHHHHH-HHHHHHTTCEEEEEE----C------------CSCTTCHHHHHHHHHHS-SSCEEESTTCSSHHHHHHHHH
T ss_pred CHHHHHHH-HHHHhhCCCCeEEEE----C------------CCCcccHHHHHHHHhhC-CCCEEECCCCCCHHHHHHHHH
Confidence 45555553 4455 555666653 1 12334577777887765 899998888999999999998
Q ss_pred hC-CChhhhh
Q 020423 288 KG-AHHVMVG 296 (326)
Q Consensus 288 ~G-aD~V~iG 296 (326)
.| +|.|++=
T Consensus 262 ~~a~d~v~~k 271 (389)
T 3s5s_A 262 ERAATVVNIK 271 (389)
T ss_dssp TTCCSEEEEC
T ss_pred cCCCCEEEec
Confidence 65 8887653
|
| >3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0 | Back alignment and structure |
|---|
Probab=95.55 E-value=0.067 Score=46.97 Aligned_cols=105 Identities=15% Similarity=0.088 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHhcCCCcEEEEeccCCCCC-ccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHH
Q 020423 180 KFVGEAMSVIAANTNVPVSVKCRIGVDDH-DSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYY 258 (326)
Q Consensus 180 ~~l~eiv~avr~~~~~pv~vK~r~g~~~~-~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i 258 (326)
..+.++++.+... -.+.|.++.-.++. .+..+..+ +++.++++|+..|.+.+ .+.+
T Consensus 5 ~~~~~~~~~~~~~--~~livscq~~~~~pl~~~~~~~~-~A~a~~~~Ga~~i~~~~--------------------~~~i 61 (232)
T 3igs_A 5 SLLEQLDKNIAAS--GGLIVSCQPVPGSPLDKPEIVAA-MALAAEQAGAVAVRIEG--------------------IDNL 61 (232)
T ss_dssp CHHHHHHHHHHHH--CCEEEECCCCTTCTTCSHHHHHH-HHHHHHHTTCSEEEEES--------------------HHHH
T ss_pred HHHHHHHHHhhhc--CCEEEEEeCCCCCCCCCcchHHH-HHHHHHHCCCeEEEECC--------------------HHHH
Confidence 3455566666322 24667766543332 22333333 67778899999987621 4567
Q ss_pred HHHHhcCCCceEEEe-----CC--C---CCHHHHHHHHHhCCChhhhhHHHHhCCchhHH
Q 020423 259 YALLRDFPDLTFTLN-----GG--I---NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLG 308 (326)
Q Consensus 259 ~~i~~~~~~iPVIa~-----Gg--I---~s~~da~~~l~~GaD~V~iGRall~dP~l~~~ 308 (326)
.++++. +++||++. || + .+.+++.++++.|||.|.++.+...+|....+
T Consensus 62 ~~ir~~-v~~Pvig~~k~d~~~~~~~I~~~~~~i~~~~~~Gad~V~l~~~~~~~p~~l~~ 120 (232)
T 3igs_A 62 RMTRSL-VSVPIIGIIKRDLDESPVRITPFLDDVDALAQAGAAIIAVDGTARQRPVAVEA 120 (232)
T ss_dssp HHHHTT-CCSCEEEECBCCCSSCCCCBSCSHHHHHHHHHHTCSEEEEECCSSCCSSCHHH
T ss_pred HHHHHh-cCCCEEEEEeecCCCcceEeCccHHHHHHHHHcCCCEEEECccccCCHHHHHH
Confidence 777655 59999862 33 3 35678999999999999999888778864333
|
| >2chr_A Chloromuconate cycloisomerase; 3.00A {Cupriavidus necator} SCOP: c.1.11.2 d.54.1.1 | Back alignment and structure |
|---|
Probab=95.55 E-value=0.38 Score=44.82 Aligned_cols=126 Identities=10% Similarity=0.041 Sum_probs=86.7
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCc--EEEEeccCCCCCcc
Q 020423 133 GSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVP--VSVKCRIGVDDHDS 210 (326)
Q Consensus 133 g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~p--v~vK~r~g~~~~~~ 210 (326)
+..++++.+.++.+.+.||..+-+..|. ..++.-.+.++++|+.++.. +.+-...+|+
T Consensus 141 ~~~~~~~~~~~~~~~~~g~~~~K~Kvg~----------------~~~~~d~~~v~avr~~~g~~~~l~vDaN~~~~---- 200 (370)
T 2chr_A 141 GDTKRDLDSAVEMIERRRHNRFKVKLGF----------------RSPQDDLIHMEALSNSLGSKAYLRVDVNQAWD---- 200 (370)
T ss_dssp SCHHHHHHHHHHHHHTTSCCEEEEECSS----------------SCHHHHHHHHHHHHHHTTTTSEEEEECTTCCC----
T ss_pred CchhhhHHHHHHHHhhcccceeeccccc----------------CChHHHHHHHHHHHHhcCCCcEEEecCCCCCC----
Confidence 3456788889999999999999887542 12444556788888887544 4444444443
Q ss_pred HHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhC-
Q 020423 211 YNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKG- 289 (326)
Q Consensus 211 ~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~G- 289 (326)
.++..+ +.+.+++.++.+|. . ..++.+++.++++.+.. ++||.+.=.+.+..++.++++.+
T Consensus 201 ~~~A~~-~~~~l~~~~~~~iE----e------------P~~~~d~~~~~~l~~~~-~ipIa~dE~~~~~~~~~~~~~~~a 262 (370)
T 2chr_A 201 EQVASV-YIPELEALGVELIE----Q------------PVGRENTQALRRLSDNN-RVAIMADESLSTLASAFDLARDRS 262 (370)
T ss_dssp THHHHH-HHHHHHTTTCCEEE----C------------CSCSSCHHHHHHHHHHC-SSEEEESSSCCSHHHHHHHHTTTC
T ss_pred HHHHHH-HHHHHHhcCCceec----C------------CCChhhhhhhhHHhhhc-cCCccCCccCCCHHHHHHHHHcCC
Confidence 334444 34566788888874 1 12334577777887765 89998888899999999999855
Q ss_pred CChhhhh
Q 020423 290 AHHVMVG 296 (326)
Q Consensus 290 aD~V~iG 296 (326)
+|.|++=
T Consensus 263 ~d~i~~d 269 (370)
T 2chr_A 263 VDVFSLK 269 (370)
T ss_dssp CSEECCC
T ss_pred CcEEEeC
Confidence 7877653
|
| >3fok_A Uncharacterized protein CGL0159; CGL0159 ,brevibacterium flavum., structural genomics, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=95.54 E-value=0.03 Score=51.04 Aligned_cols=141 Identities=12% Similarity=0.059 Sum_probs=84.0
Q ss_pred HHHHHHHCCCCEEE----ecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEE--e--ccCC--CCCccH
Q 020423 142 ATELANAYNYDEIN----LNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVK--C--RIGV--DDHDSY 211 (326)
Q Consensus 142 aA~~a~~aG~d~Ie----in~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK--~--r~g~--~~~~~~ 211 (326)
.++.+.+.|+|+|- ++.|+|... ...+.+.+++++. +..+.|+.+- + |.|. .+..+.
T Consensus 133 sVe~AvrlGADaV~~l~~i~~Gs~~e~------------~~l~~la~vv~ea-~~~GlP~~~ep~~y~r~gg~v~~~~dp 199 (307)
T 3fok_A 133 NVSSMVDRGVDFAKTLVRINLSDAGTA------------PTLEATAHAVNEA-AAAQLPIMLEPFMSNWVNGKVVNDLST 199 (307)
T ss_dssp CHHHHHHHTCCEEEEEEEECTTCTTHH------------HHHHHHHHHHHHH-HHTTCCEEEEEEEEEEETTEEEECCSH
T ss_pred CHHHHHHCCCCEEEEEEEECCCChhHH------------HHHHHHHHHHHHH-HHcCCcEEEEeeccccCCCCcCCCCCH
Confidence 45556777999977 344444310 2234455555554 3458897774 2 2121 122233
Q ss_pred HHHHHHHHHHhhhCCcc----EEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCC--CHHHH---
Q 020423 212 NQLCDFIYKVSSLSPTR----HFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGIN--TVDEV--- 282 (326)
Q Consensus 212 ~e~~~~ia~~le~~Gvd----~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~--s~~da--- 282 (326)
+.+...+++..+.|+| ++-+.- + +.+.++.+.. .+||+..||=. +.+++
T Consensus 200 -~~Va~aaRiAaELGADs~~tivK~~y-----------------~---e~f~~Vv~a~-~vPVViaGG~k~~~~~e~L~~ 257 (307)
T 3fok_A 200 -DAVIQSVAIAAGLGNDSSYTWMKLPV-----------------V---EEMERVMEST-TMPTLLLGGEGGNDPDATFAS 257 (307)
T ss_dssp -HHHHHHHHHHHTCSSCCSSEEEEEEC-----------------C---TTHHHHGGGC-SSCEEEECCSCC--CHHHHHH
T ss_pred -HHHHHHHHHHHHhCCCcCCCEEEeCC-----------------c---HHHHHHHHhC-CCCEEEeCCCCCCCHHHHHHH
Confidence 3444456777789999 876521 0 1234566655 79998888865 34444
Q ss_pred -HHHHH-hCCChhhhhHHHHh--C--CchhHHhHHHhhhCC
Q 020423 283 -NAALR-KGAHHVMVGRAAYQ--N--PWYTLGHVDTAIYGA 317 (326)
Q Consensus 283 -~~~l~-~GaD~V~iGRall~--d--P~l~~~~i~~~~~~~ 317 (326)
.++++ .|+.++.+||-++. + |.-+.+.+...+|+.
T Consensus 258 v~~A~~~aGa~Gv~vGRNIfQ~~~~dp~~~v~al~~iVH~~ 298 (307)
T 3fok_A 258 WEHALTLPGVRGLTVGRTLLYPQDGDVAAAVDTAARLVHTD 298 (307)
T ss_dssp HHHHTTSTTEEEEEECTTTSSCSSSCHHHHHHHHHHHHCCC
T ss_pred HHHHHHhCCCeEEeechhhccCCCCCHHHHHHHHHHHHHhh
Confidence 44555 69999999999988 4 454566666666654
|
| >4hpn_A Putative uncharacterized protein; enolase, enzyme function initiative, EFI, structural genomic isomerase; 1.60A {Agrobacterium tumefaciens} PDB: 4ggb_A | Back alignment and structure |
|---|
Probab=95.49 E-value=0.27 Score=46.04 Aligned_cols=121 Identities=8% Similarity=0.043 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCC--cEEEEeccCCCCCccHHH
Q 020423 136 LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNV--PVSVKCRIGVDDHDSYNQ 213 (326)
Q Consensus 136 ~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~--pv~vK~r~g~~~~~~~~e 213 (326)
+++.++.++...+.||..+-+..|. +++.-.+.++++|++++. .+.+-...+| +.++
T Consensus 145 ~~~~~~~~~~~~~~Gf~~~K~k~g~-----------------~~~~di~~v~avr~~~g~~~~l~vDaN~~~----~~~~ 203 (378)
T 4hpn_A 145 VSDNASEMAERRAEGFHACKIKIGF-----------------GVEEDLRVIAAVREAIGPDMRLMIDANHGY----TVTE 203 (378)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEECCS-----------------CHHHHHHHHHHHHHHHTTTSEEEEECTTCC----CHHH
T ss_pred HHHHHHHHHHHHHhccceecccccC-----------------ChHHHHHHHHHHHHhcCCcEEEEEecCccc----CHHH
Confidence 4556666666677899999887531 244456778888888754 4444333334 3455
Q ss_pred HHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhC-CCh
Q 020423 214 LCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKG-AHH 292 (326)
Q Consensus 214 ~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~G-aD~ 292 (326)
..++ .+.+++.++.+|. . ..++.+++.++++.+.. ++||.+.=.+.+..++.++++.| +|.
T Consensus 204 A~~~-~~~l~~~~i~~iE----e------------P~~~~d~~~~~~l~~~~-~ipIa~dE~~~~~~~~~~~i~~~a~d~ 265 (378)
T 4hpn_A 204 AITL-GDRAAGFGIDWFE----E------------PVVPEQLDAYARVRAGQ-PIPVAGGETWHGRYGMWQALSAGAVDI 265 (378)
T ss_dssp HHHH-HHHHGGGCCSCEE----C------------CSCTTCHHHHHHHHHHS-SSCEEECTTCCHHHHHHHHHHTTCCSE
T ss_pred HHHH-Hhhhhhcccchhh----c------------CCCccchhhhHHHHhhC-CceeeCCcCccchHhHHHHHHcCCCCE
Confidence 5553 4556778887763 1 12334577777777765 89998888899999999999855 777
Q ss_pred hhh
Q 020423 293 VMV 295 (326)
Q Consensus 293 V~i 295 (326)
|++
T Consensus 266 i~~ 268 (378)
T 4hpn_A 266 LQP 268 (378)
T ss_dssp ECC
T ss_pred Eee
Confidence 764
|
| >4aaj_A N-(5'-phosphoribosyl)anthranilate isomerase; alpha/beta-barrel, hyperthermophilic, phosphoribo isomerase; 1.75A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=95.48 E-value=0.63 Score=40.62 Aligned_cols=133 Identities=10% Similarity=0.090 Sum_probs=74.6
Q ss_pred cEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCC
Q 020423 126 PIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGV 205 (326)
Q Consensus 126 piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~ 205 (326)
+..+.++. ++++ .+..+.+.++|.|++|.. ..+++ ++.+++..+.|+.=-++...
T Consensus 72 ~~~v~v~v-~~~e---i~~~i~~~~ld~vQLHG~-----------------E~~~~----~~~l~~~~~~~viKa~~v~~ 126 (228)
T 4aaj_A 72 VFLVSTMV-GFSE---WAMAIERTGAQYIQVHSN-----------------ALPQT----IDTLKKEFGVFVMKAFRVPT 126 (228)
T ss_dssp EEEEECCC-CHHH---HHHHHHHHTCSEEEECSC-----------------CCHHH----HHHHHHHHCCEEEEEEECCS
T ss_pred CEEEeccC-chHH---HHHHHHhccchheecccc-----------------cCHHH----HHHHhhccCceEEEEEEecc
Confidence 44455543 4443 445567789999999842 12444 44455556777764455542
Q ss_pred CCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHH
Q 020423 206 DDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAA 285 (326)
Q Consensus 206 ~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~ 285 (326)
......++....+. ......+|++-+... +|. + ...+|+.+..+.+ +.|++.+||+ +++.+.++
T Consensus 127 ~~~~~~~~~~~~~~-~~~~~~~d~~LlDs~----GGt-G------~~fDW~~~~~~~~---~~p~iLAGGL-~peNV~~A 190 (228)
T 4aaj_A 127 ISKNPEEDANRLLS-EISRYNADMVLLDTG----AGS-G------KLHDLRVSSLVAR---KIPVIVAGGL-NAENVEEV 190 (228)
T ss_dssp SCSCHHHHHHHHHH-HHHHSCCSEEEEEC------------------CCCHHHHHHHH---HSCEEEESSC-CTTTHHHH
T ss_pred cccchhhhHHHHHH-HHhccCCCEEccCCC----CCC-c------CcCChHHHHHhhh---cCCeEEECCC-CHHHHHHH
Confidence 22211222222222 233467899887642 221 1 1245877766544 4699999999 78888888
Q ss_pred HH-hCCChhhhhHHH
Q 020423 286 LR-KGAHHVMVGRAA 299 (326)
Q Consensus 286 l~-~GaD~V~iGRal 299 (326)
++ .+..+|=+.++.
T Consensus 191 i~~~~P~gVDVsSGV 205 (228)
T 4aaj_A 191 IKVVKPYGVDVSSGV 205 (228)
T ss_dssp HHHHCCSEEEESGGG
T ss_pred HHHhCCCEEEeCCCC
Confidence 87 555555554443
|
| >2pge_A MENC; OSBS, NYSGXRC, PSI-II, structural genomics, protein structure initiative; 1.60A {Desulfotalea psychrophila LSV54} | Back alignment and structure |
|---|
Probab=95.42 E-value=0.14 Score=48.10 Aligned_cols=128 Identities=14% Similarity=0.085 Sum_probs=82.4
Q ss_pred EecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCC---CcEEEEeccCCC
Q 020423 130 QIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTN---VPVSVKCRIGVD 206 (326)
Q Consensus 130 QL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~---~pv~vK~r~g~~ 206 (326)
.+...+++.+.+.++.+.+.||..+-+..|. .+++.-.+.++++|++++ ..+.+-...+|+
T Consensus 157 ~i~~~~~e~~~~~a~~~~~~G~~~~K~Kvg~----------------~~~~~d~~~v~avr~~~g~~~~~l~vDaN~~~~ 220 (377)
T 2pge_A 157 LIWMGEAAFMQEQIEAKLAEGYGCLKLKIGA----------------IDFDKECALLAGIRESFSPQQLEIRVDANGAFS 220 (377)
T ss_dssp EECCCCHHHHHHHHHHHHHTTCSEEEEEC-------------------CHHHHHHHHHHHHHHSCTTTCEEEEECTTBBC
T ss_pred EecCCCHHHHHHHHHHHHHHhhhhheeecCC----------------CChHHHHHHHHHHHHHcCCCCceEEEECCCCCC
Confidence 3455678889888888889999999987541 135666788888888876 344444444443
Q ss_pred CCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHH--HHH
Q 020423 207 DHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDE--VNA 284 (326)
Q Consensus 207 ~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~d--a~~ 284 (326)
. ++..++ .+.+++.++.+|. . ..++.+++.++++.++. ++||.+.=.+.+..+ +.+
T Consensus 221 ~----~~a~~~-~~~l~~~~i~~iE----q------------P~~~~d~~~~~~l~~~~-~ipIa~dE~~~~~~~~~~~~ 278 (377)
T 2pge_A 221 P----ANAPQR-LKRLSQFHLHSIE----Q------------PIRQHQWSEMAALCANS-PLAIALDEELIGLGAEQRSA 278 (377)
T ss_dssp T----TTHHHH-HHHHHTTCCSEEE----C------------CBCSSCHHHHHHHHHHC-SSCEEESGGGTTCCTHHHHH
T ss_pred H----HHHHHH-HHHHhcCCCcEEE----c------------cCCcccHHHHHHHHhhC-CCcEEECCccCCcchHHHHH
Confidence 2 233443 3566778888874 1 11233467677776664 788877777766666 556
Q ss_pred HHHh-CCChhhh
Q 020423 285 ALRK-GAHHVMV 295 (326)
Q Consensus 285 ~l~~-GaD~V~i 295 (326)
+++. .+|.|++
T Consensus 279 ~i~~~a~d~i~i 290 (377)
T 2pge_A 279 MLDAIRPQYIIL 290 (377)
T ss_dssp HHHHHCCSEEEE
T ss_pred HHHhCCCCEEEE
Confidence 6663 4776655
|
| >3vav_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; structural genomics, seattle structural genomics center for infectious disease; 1.80A {Burkholderia thailandensis} SCOP: c.1.12.8 PDB: 3ez4_A | Back alignment and structure |
|---|
Probab=95.41 E-value=0.29 Score=43.99 Aligned_cols=127 Identities=12% Similarity=0.034 Sum_probs=74.5
Q ss_pred hhhhhcCCCCCcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCC
Q 020423 115 DRFLAFSPEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTN 194 (326)
Q Consensus 115 ~~~~~~~~~~~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~ 194 (326)
..+.+.+..+.|+ +-+...+ .-.|+.+.++|||.| +-..+-. .+ .-| |-..+.-..+.+..-+++|++.++
T Consensus 19 ~~lr~~~~~g~~i-~m~tayD----a~sA~l~e~aG~d~i-lvGdSl~-~~-~lG-~~dt~~vtldem~~h~~aV~r~~~ 89 (275)
T 3vav_A 19 PKLQAMREAGEKI-AMLTCYD----ASFAALLDRANVDVQ-LIGDSLG-NV-LQG-QTTTLPVTLDDIAYHTACVARAQP 89 (275)
T ss_dssp HHHHHHHHHTCCE-EEEECCS----HHHHHHHHHTTCSEE-EECTTHH-HH-TTC-CSSSTTCCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHCCCcE-EEEeCcC----HHHHHHHHHcCCCEE-EECcHHH-HH-HcC-CCCCCccCHHHHHHHHHHHHhcCC
Confidence 3444445555554 3445555 346778899999999 4322211 10 000 111122335666677778877774
Q ss_pred -CcEEEEeccC-CCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEE
Q 020423 195 -VPVSVKCRIG-VDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTL 272 (326)
Q Consensus 195 -~pv~vK~r~g-~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa 272 (326)
.||.+-+-.| + .+.++..+.+.++++ .|++.|.+.++.. ..+.++.+.+. .|||++
T Consensus 90 ~~~vvaD~pfgsY---~s~~~a~~~a~rl~k-aGa~aVklEdg~~----------------~~~~i~~l~~~--GIpv~g 147 (275)
T 3vav_A 90 RALIVADLPFGTY---GTPADAFASAVKLMR-AGAQMVKFEGGEW----------------LAETVRFLVER--AVPVCA 147 (275)
T ss_dssp SSEEEEECCTTSC---SSHHHHHHHHHHHHH-TTCSEEEEECCGG----------------GHHHHHHHHHT--TCCEEE
T ss_pred CCCEEEecCCCCC---CCHHHHHHHHHHHHH-cCCCEEEECCchh----------------HHHHHHHHHHC--CCCEEE
Confidence 7899998885 4 245555555555554 6999999987531 14556666543 788876
|
| >1v5x_A PRA isomerase, phosphoribosylanthranilate isomerase; alpha-beta barrel, TRPF, riken structural genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.1.2.4 | Back alignment and structure |
|---|
Probab=95.39 E-value=0.45 Score=40.76 Aligned_cols=173 Identities=11% Similarity=0.069 Sum_probs=92.9
Q ss_pred CCCChHHHHHHHHHcCCCcEEEecceeeccccccccchhhhhh-cCCCCCcEEEEecCCCHHHHHHHHHHHHHCCCCEEE
Q 020423 77 MDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLA-FSPEQHPIVLQIGGSNLDNLAKATELANAYNYDEIN 155 (326)
Q Consensus 77 ~~~s~~~~r~~~~~~Gg~gli~te~~~~~~~~~~~~~~~~~~~-~~~~~~piivQL~g~~~~~f~~aA~~a~~aG~d~Ie 155 (326)
+|.++.+=..++.+.| ++.+..-+....+..-..++...+.. +.+.- ..+-++.+. +..+..+.+.+++.|.|.
T Consensus 6 CGit~~eda~~a~~~G-aD~iGfif~~~SpR~V~~~~a~~i~~~~~~~~--~~VgVfvn~--~~~~i~~~~~~~~ld~vQ 80 (203)
T 1v5x_A 6 CGITRLEDALLAEALG-AFALGFVLAPGSRRRIAPEAARAIGEALGPFV--VRVGVFRDQ--PPEEVLRLMEEARLQVAQ 80 (203)
T ss_dssp CCCCCHHHHHHHHHHT-CSEEEEECCTTCTTBCCHHHHHHHHHHSCSSS--EEEEEESSC--CHHHHHHHHHHTTCSEEE
T ss_pred cCCCcHHHHHHHHHcC-CCEEEEEecCCCCCcCCHHHHHHHHHhCCCCC--CEEEEEeCC--CHHHHHHHHHhhCCCEEE
Confidence 5666666555555555 55543333222222111222233322 22222 333334332 134455566778999999
Q ss_pred ecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecC
Q 020423 156 LNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSR 235 (326)
Q Consensus 156 in~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~ 235 (326)
+|.. ..++++.++ +. +.|++--++..... ++ . .....+|++-+.+.
T Consensus 81 LHG~-----------------e~~~~~~~l----~~--~~~vika~~v~~~~--~l-~--------~~~~~~d~~LlD~~ 126 (203)
T 1v5x_A 81 LHGE-----------------EPPEWAEAV----GR--FYPVIKAFPLEGPA--RP-E--------WADYPAQALLLDGK 126 (203)
T ss_dssp ECSC-----------------CCHHHHHHH----TT--TSCEEEEEECSSSC--CG-G--------GGGSSCSEEEEECS
T ss_pred ECCC-----------------CCHHHHHHh----cc--CCCEEEEEEcCChH--hh-h--------hhhcCCCEEEEcCC
Confidence 9942 124444333 21 57777666664221 11 1 12233899988753
Q ss_pred CcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHh
Q 020423 236 KALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 301 (326)
Q Consensus 236 ~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~ 301 (326)
. +|. + .+.+|+.+..+.. .+.|++.+||+ +++.+.+++..++.+|=+.+++=.
T Consensus 127 ~---gGt-G------~~fdW~~l~~~~~--~~~p~~LAGGL-~peNV~~ai~~~p~gVDvsSGvE~ 179 (203)
T 1v5x_A 127 R---PGS-G------EAYPRAWAKPLLA--TGRRVILAGGI-APENLEEVLALRPYALDLASGVEE 179 (203)
T ss_dssp S---TTS-C------CCCCGGGGHHHHH--TTSCEEECSSC-CSTTHHHHHHHCCSEEEESGGGEE
T ss_pred C---CCC-C------CccCHHHHHhhhc--cCCcEEEECCC-CHHHHHHHHhcCCCEEEeCCceec
Confidence 3 221 1 2345776655222 26799999999 788887777668888888877653
|
| >3paj_A Nicotinate-nucleotide pyrophosphorylase, carboxyl; TIM barrel, pyridin dicarboxylate, 5-phospho-alpha-D-ribose 1-diphosphate; 2.00A {Vibrio cholerae o1 biovar el tor} | Back alignment and structure |
|---|
Probab=95.39 E-value=0.085 Score=48.49 Aligned_cols=91 Identities=15% Similarity=0.190 Sum_probs=58.0
Q ss_pred HHHHHHHHhcC-CCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHH
Q 020423 183 GEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYAL 261 (326)
Q Consensus 183 ~eiv~avr~~~-~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i 261 (326)
.+.++++|+.. ..++.|- .+++++..+ .+ ++|+|.|-+...+ .+.++++
T Consensus 219 ~~Av~~ar~~~p~~kIeVE-------Vdtldea~e----Al-~aGaD~I~LDn~~------------------~~~l~~a 268 (320)
T 3paj_A 219 RQAISTAKQLNPGKPVEVE-------TETLAELEE----AI-SAGADIIMLDNFS------------------LEMMREA 268 (320)
T ss_dssp HHHHHHHHHHSTTSCEEEE-------ESSHHHHHH----HH-HTTCSEEEEESCC------------------HHHHHHH
T ss_pred HHHHHHHHHhCCCCeEEEE-------ECCHHHHHH----HH-HcCCCEEEECCCC------------------HHHHHHH
Confidence 35555555554 2344442 234555433 22 3799999886521 2334443
Q ss_pred HhcC-CCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhCCc
Q 020423 262 LRDF-PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW 304 (326)
Q Consensus 262 ~~~~-~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~dP~ 304 (326)
++.. .++++.++||| +.+.+.++.++|+|.+.+|..-..-|+
T Consensus 269 v~~l~~~v~ieaSGGI-t~~~I~~~a~tGVD~isvGalt~sa~~ 311 (320)
T 3paj_A 269 VKINAGRAALENSGNI-TLDNLKECAETGVDYISVGALTKHLKA 311 (320)
T ss_dssp HHHHTTSSEEEEESSC-CHHHHHHHHTTTCSEEECTHHHHSBCC
T ss_pred HHHhCCCCeEEEECCC-CHHHHHHHHHcCCCEEEECceecCCCc
Confidence 3322 37999999999 799999999999999999985543344
|
| >1o66_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; structural genomics; HET: MSE; 1.75A {Neisseria meningitidis serogroup B} SCOP: c.1.12.8 PDB: 1o68_A* | Back alignment and structure |
|---|
Probab=95.38 E-value=0.19 Score=45.12 Aligned_cols=122 Identities=8% Similarity=-0.033 Sum_probs=69.6
Q ss_pred CCCCCcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCc-EEE
Q 020423 121 SPEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVP-VSV 199 (326)
Q Consensus 121 ~~~~~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~p-v~v 199 (326)
+..+.|+ +-+...+ .-.|+.+.++|||.|=+ |.....+ . -+|-..+.-..+.+...+++|++.++.| +.+
T Consensus 13 k~~g~~i-~~~tayD----a~sA~l~e~aG~d~ilv--GdSl~~~-~-lG~~dt~~vTldemi~h~~aV~r~~~~~~vva 83 (275)
T 1o66_A 13 KAAGEKI-AMLTAYE----SSFAALMDDAGVEMLLV--GDSLGMA-V-QGRKSTLPVSLRDMCYHTECVARGAKNAMIVS 83 (275)
T ss_dssp HHHTCCE-EEEECCS----HHHHHHHHHTTCCEEEE--CTTHHHH-T-TCCSSSTTCCHHHHHHHHHHHHHHCSSSEEEE
T ss_pred HhCCCcE-EEEeCcC----HHHHHHHHHcCCCEEEE--CHHHHHH-H-cCCCCCCCCCHHHHHHHHHHHHhhCCCCeEEE
Confidence 3344444 3455566 34678888999999944 3211111 0 0122222234667777788888877755 555
Q ss_pred EeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEE
Q 020423 200 KCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFT 271 (326)
Q Consensus 200 K~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVI 271 (326)
-+..|.. ..+.++..+.+.+++ ++|++.|.+.++.. ..+.++.+.+. .|||+
T Consensus 84 D~pfgsy-~~s~~~a~~na~rl~-kaGa~aVklEdg~e----------------~~~~I~al~~a--gIpV~ 135 (275)
T 1o66_A 84 DLPFGAY-QQSKEQAFAAAAELM-AAGAHMVKLEGGVW----------------MAETTEFLQMR--GIPVC 135 (275)
T ss_dssp ECCTTSS-SSCHHHHHHHHHHHH-HTTCSEEEEECSGG----------------GHHHHHHHHHT--TCCEE
T ss_pred ECCCCCc-cCCHHHHHHHHHHHH-HcCCcEEEECCcHH----------------HHHHHHHHHHc--CCCeE
Confidence 5544322 134556665555555 49999999987521 13455555543 78887
|
| >1m3u_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; beta-alpha-barrel, TIM-barrel, ketopantoate, selenomethionin decamer; HET: KPL; 1.80A {Escherichia coli} SCOP: c.1.12.8 | Back alignment and structure |
|---|
Probab=95.29 E-value=0.24 Score=44.22 Aligned_cols=145 Identities=10% Similarity=-0.013 Sum_probs=82.5
Q ss_pred CCCCCcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCc-EEE
Q 020423 121 SPEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVP-VSV 199 (326)
Q Consensus 121 ~~~~~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~p-v~v 199 (326)
+..+.|+ +-+...+ .-.|+.+.++|||.|=+ |.....+ . -+|-..+.-..+.+..-.++|++.++.| +.+
T Consensus 13 k~~g~~i-~~~tayD----~~sA~l~e~aG~d~ilv--Gdsl~~~-~-lG~~dt~~vtldemi~h~~aV~r~~~~~~vva 83 (264)
T 1m3u_A 13 KQEKKRF-ATITAYD----YSFAKLFADEGLNVMLV--GDSLGMT-V-QGHDSTLPVTVADIAYHTAAVRRGAPNCLLLA 83 (264)
T ss_dssp HHHTCCE-EEEECCS----HHHHHHHHHHTCCEEEE--CTTHHHH-T-TCCSSSTTCCHHHHHHHHHHHHHHCTTSEEEE
T ss_pred HHCCCcE-EEEeCcC----HHHHHHHHHcCCCEEEE--CHHHHHH-H-cCCCCCCCcCHHHHHHHHHHHHhhCCCCcEEE
Confidence 3344444 3455566 34678888999999977 3222111 0 0112222234566677778888877755 555
Q ss_pred EeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEE-------
Q 020423 200 KCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTL------- 272 (326)
Q Consensus 200 K~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa------- 272 (326)
-+..|.. .+.++..+.+.+++ ++|++.+.+.++.. ..+.++.+.+. .|||++
T Consensus 84 D~pfgsy--~~~~~a~~~a~rl~-kaGa~aVklEgg~e----------------~~~~I~al~~a--gipV~gHiGLtPq 142 (264)
T 1m3u_A 84 DLPFMAY--ATPEQAFENAATVM-RAGANMVKIEGGEW----------------LVETVQMLTER--AVPVCGHLGLTPQ 142 (264)
T ss_dssp ECCTTSS--SSHHHHHHHHHHHH-HTTCSEEECCCSGG----------------GHHHHHHHHHT--TCCEEEEEESCGG
T ss_pred ECCCCCc--CCHHHHHHHHHHHH-HcCCCEEEECCcHH----------------HHHHHHHHHHC--CCCeEeeecCCce
Confidence 5555322 25566666555555 49999999876521 14455555543 788873
Q ss_pred ----eCCC----CCHHHHH-------HHHHhCCChhhh
Q 020423 273 ----NGGI----NTVDEVN-------AALRKGAHHVMV 295 (326)
Q Consensus 273 ----~GgI----~s~~da~-------~~l~~GaD~V~i 295 (326)
-||. ++.+.++ .+.+.|||+|.+
T Consensus 143 ~v~~~ggf~v~grt~~~a~~~i~rA~a~~eAGA~~ivl 180 (264)
T 1m3u_A 143 SVNIFGGYKVQGRGDEAGDQLLSDALALEAAGAQLLVL 180 (264)
T ss_dssp GHHHHTSSCCCCCSHHHHHHHHHHHHHHHHHTCCEEEE
T ss_pred eecccCCeEEEeCCHHHHHHHHHHHHHHHHCCCcEEEE
Confidence 2443 2433333 333479998866
|
| >4h83_A Mandelate racemase/muconate lactonizing enzyme; structural genomics, enzyme function initiative; 2.09A {Marine actinobacterium PHSC20C1} PDB: 3no1_A 3msy_A | Back alignment and structure |
|---|
Probab=95.13 E-value=0.18 Score=47.62 Aligned_cols=124 Identities=7% Similarity=0.017 Sum_probs=83.4
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCC--cEEEEeccCCCCCccH
Q 020423 134 SNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNV--PVSVKCRIGVDDHDSY 211 (326)
Q Consensus 134 ~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~--pv~vK~r~g~~~~~~~ 211 (326)
...+++++.++.+.+.||..+-+..+. .+++.-.+.++++|++++. .+.+-...+| +.
T Consensus 163 ~~~~~~~~~~~~~~~~G~~~~Kikvg~----------------~~~~~d~~~v~avR~~~G~~~~l~vDaN~~~----~~ 222 (388)
T 4h83_A 163 EPLGSIADEMHNYQELGLAGVKFKVGG----------------LSAAEDAARITAAREAAGDDFIICIDANQGY----KP 222 (388)
T ss_dssp CTTCSHHHHHHHHHHHTBSEEEEECSS----------------SCHHHHHHHHHHHHHHHCSSSEEEEECTTCB----CH
T ss_pred CCHHHHHHHHHHHHHcCCceEeecCCC----------------CCHHHHHHHHHHHHHhcCCCeEEEEecCcCC----CH
Confidence 345778888899999999999997532 1233345667888888754 4444433333 34
Q ss_pred HHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCC-ccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhC-
Q 020423 212 NQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPP-LKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKG- 289 (326)
Q Consensus 212 ~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~-~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~G- 289 (326)
++..+ +.+.+++.++.+|. . ..++ -+++.++++.+.. ++||.+.=.+.+..++.++++.|
T Consensus 223 ~~A~~-~~~~l~~~~~~~iE----e------------P~~~~~d~~~~~~l~~~~-~ipIa~dE~~~~~~~~~~~i~~~a 284 (388)
T 4h83_A 223 AVAVD-LSRRIADLNIRWFE----E------------PVEWHNDKRSMRDVRYQG-SVPVCAGQTEFSASGCRDLMETGA 284 (388)
T ss_dssp HHHHH-HHHHTTTSCCCCEE----S------------CBCSTTHHHHHHHHHHHS-SSCEEECTTCSSHHHHHHHHHHTC
T ss_pred HHHHH-HHHHhhhcCcceee----c------------CcccccchHHHHHHHhhc-CCCccCCccccChHhHHHHHHcCC
Confidence 45555 34566788887763 1 1112 2356666776664 89999888999999999999866
Q ss_pred CChhhh
Q 020423 290 AHHVMV 295 (326)
Q Consensus 290 aD~V~i 295 (326)
+|.|++
T Consensus 285 ~d~i~~ 290 (388)
T 4h83_A 285 IDVCNF 290 (388)
T ss_dssp CSEECC
T ss_pred CCeEee
Confidence 888765
|
| >3c2e_A Nicotinate-nucleotide pyrophosphorylase; qprtase, prtase, BNA6, mechanism, cytoplasm, glycosyltransferase, nucleus; 1.90A {Saccharomyces cerevisiae} PDB: 3c2f_A* 3c2o_A* 3c2v_A* 3c2r_A* | Back alignment and structure |
|---|
Probab=95.07 E-value=0.0073 Score=55.17 Aligned_cols=38 Identities=13% Similarity=0.220 Sum_probs=27.1
Q ss_pred CCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhCCc
Q 020423 266 PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW 304 (326)
Q Consensus 266 ~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~dP~ 304 (326)
+++||.++||| +.+.+.++.+.|+|.+.+|+.....|+
T Consensus 248 ~~v~I~ASGGI-t~~ni~~~~~~GvD~i~vGs~i~~a~~ 285 (294)
T 3c2e_A 248 KHFLLECSGGL-NLDNLEEYLCDDIDIYSTSSIHQGTPV 285 (294)
T ss_dssp -CCEEEEECCC-CC------CCCSCSEEECGGGTSSCCC
T ss_pred CCeEEEEECCC-CHHHHHHHHHcCCCEEEEechhcCCCC
Confidence 35999999999 999999999999999999998655455
|
| >3eoo_A Methylisocitrate lyase; seattle structural genomics center for infectious disease, ssgcid; 2.90A {Burkholderia pseudomallei 1655} SCOP: c.1.12.7 | Back alignment and structure |
|---|
Probab=95.07 E-value=0.21 Score=45.44 Aligned_cols=170 Identities=16% Similarity=0.168 Sum_probs=88.8
Q ss_pred hcCCCCCcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecC-CCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcE
Q 020423 119 AFSPEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNC-GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPV 197 (326)
Q Consensus 119 ~~~~~~~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~-g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv 197 (326)
+.+..+.|++ =+...+ .-.|+.+.++|||.|=+.. +.-.......|. | .-..+-+...++.|.+.++.||
T Consensus 16 ~l~~~~~~i~-~~~a~D----~~sA~l~e~aGf~ai~vs~~s~a~~~~G~pD~-~---~vt~~em~~~~~~I~r~~~~Pv 86 (298)
T 3eoo_A 16 AAVAAEQPLQ-VVGAIT----AYAAKMAEAVGFKAVYLSGGGVAANSLGIPDL-G---ISTMDDVLVDANRITNATNLPL 86 (298)
T ss_dssp HHHHHSSSEE-EEECSS----HHHHHHHHHHTCSCEEECHHHHHHHTTCCCSS-S---CCCHHHHHHHHHHHHHHCCSCE
T ss_pred HHHhCCCcEE-EecCCC----HHHHHHHHHcCCCEEEECcHHHHHHhcCCCCC-C---CCCHHHHHHHHHHHHhhcCCeE
Confidence 3344444443 233444 3356667888999998853 111000001111 1 1235666777777777789999
Q ss_pred EEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCc-ccCCCCcCCcCCCCCcc--HHHHHHHHhcCCCceEEEeC
Q 020423 198 SVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKA-LLNGISPAENRTIPPLK--YEYYYALLRDFPDLTFTLNG 274 (326)
Q Consensus 198 ~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~-~~~g~~~~~~~~~~~~~--~~~i~~i~~~~~~iPVIa~G 274 (326)
++-+-.|+. +.+...+.+ +.++++|++.|++.+... ...|+.+ ...+-+.. .+.++..++...+.+++.++
T Consensus 87 iaD~d~Gyg---~~~~v~~~v-~~l~~aGaagv~iEDq~~~k~cGh~~--gk~l~~~~e~~~ri~Aa~~A~~~~~~~I~A 160 (298)
T 3eoo_A 87 LVDIDTGWG---GAFNIARTI-RSFIKAGVGAVHLEDQVGQKRCGHRP--GKECVPAGEMVDRIKAAVDARTDETFVIMA 160 (298)
T ss_dssp EEECTTCSS---SHHHHHHHH-HHHHHTTCSEEEEECBCCCCCTTCCC--CCCBCCHHHHHHHHHHHHHHCSSTTSEEEE
T ss_pred EEECCCCCC---CHHHHHHHH-HHHHHhCCeEEEECCCCCCcccCCCC--CCeecCHHHHHHHHHHHHHhccCCCeEEEE
Confidence 999988864 333444433 445679999999987643 1122211 11111211 22333333332234455555
Q ss_pred CCCCH---------HHHHHHHHhCCChhhhhHHHHhCCch
Q 020423 275 GINTV---------DEVNAALRKGAHHVMVGRAAYQNPWY 305 (326)
Q Consensus 275 gI~s~---------~da~~~l~~GaD~V~iGRall~dP~l 305 (326)
..... +.+..+.+.|||+|.+=- +.+++.
T Consensus 161 RTDa~~~~gldeai~Ra~ay~~AGAD~if~~~--~~~~ee 198 (298)
T 3eoo_A 161 RTDAAAAEGIDAAIERAIAYVEAGADMIFPEA--MKTLDD 198 (298)
T ss_dssp EECTHHHHHHHHHHHHHHHHHHTTCSEEEECC--CCSHHH
T ss_pred eehhhhhcCHHHHHHHHHhhHhcCCCEEEeCC--CCCHHH
Confidence 54433 223334457999998732 245553
|
| >3tqv_A Nicotinate-nucleotide pyrophosphorylase; glycosyltransferase, transferase; 2.62A {Francisella tularensis subsp} | Back alignment and structure |
|---|
Probab=94.96 E-value=0.079 Score=47.97 Aligned_cols=91 Identities=13% Similarity=0.122 Sum_probs=58.6
Q ss_pred HHHHHHHHhcC-CCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHH
Q 020423 183 GEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYAL 261 (326)
Q Consensus 183 ~eiv~avr~~~-~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i 261 (326)
.+.++.+|+.. ..++.|- .++++|..+ .+ ++|+|.|-++.-+ .+.++++
T Consensus 186 ~~Av~~ar~~~~~~~IeVE-------v~tl~ea~e----Al-~aGaD~I~LDn~~------------------~~~l~~a 235 (287)
T 3tqv_A 186 AKAVTKAKKLDSNKVVEVE-------VTNLDELNQ----AI-AAKADIVMLDNFS------------------GEDIDIA 235 (287)
T ss_dssp HHHHHHHHHHCTTSCEEEE-------ESSHHHHHH----HH-HTTCSEEEEESCC------------------HHHHHHH
T ss_pred HHHHHHHHhhCCCCcEEEE-------eCCHHHHHH----HH-HcCCCEEEEcCCC------------------HHHHHHH
Confidence 35555555543 3455552 234555433 22 4899999886421 2333333
Q ss_pred HhcC-CCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhCCc
Q 020423 262 LRDF-PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW 304 (326)
Q Consensus 262 ~~~~-~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~dP~ 304 (326)
++.. .++++.++||| +++.+.++.+.|+|.+.+|.....-|+
T Consensus 236 v~~~~~~v~ieaSGGI-t~~~i~~~a~tGVD~IsvGalt~sa~~ 278 (287)
T 3tqv_A 236 VSIARGKVALEVSGNI-DRNSIVAIAKTGVDFISVGAITKHIKA 278 (287)
T ss_dssp HHHHTTTCEEEEESSC-CTTTHHHHHTTTCSEEECSHHHHSBCC
T ss_pred HHhhcCCceEEEECCC-CHHHHHHHHHcCCCEEEEChhhcCCcc
Confidence 3321 37899999999 889999999999999999976655554
|
| >3iwp_A Copper homeostasis protein CUTC homolog; conserved sequence motif, metal-binding site, polymorphism, metal binding protein; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.89 E-value=0.37 Score=43.51 Aligned_cols=125 Identities=14% Similarity=0.141 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHH
Q 020423 137 DNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 216 (326)
Q Consensus 137 ~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~ 216 (326)
+.+.+-.+.++++|+|||-+.+-.|.. . -+.+.+.+++++.. +.++++--.+ +...+..+.++
T Consensus 111 ~~M~~dI~~~~~~GAdGvVfG~L~~dg------~------iD~~~~~~Li~~a~---~l~vTFHRAF--D~~~d~~~Ale 173 (287)
T 3iwp_A 111 EVMKADIRLAKLYGADGLVFGALTEDG------H------IDKELCMSLMAICR---PLPVTFHRAF--DMVHDPMAALE 173 (287)
T ss_dssp HHHHHHHHHHHHTTCSEEEECCBCTTS------C------BCHHHHHHHHHHHT---TSCEEECGGG--GGCSCHHHHHH
T ss_pred HHHHHHHHHHHHcCCCEEEEeeeCCCC------C------cCHHHHHHHHHHcC---CCcEEEECch--hccCCHHHHHH
Confidence 445556678899999999997643321 1 35777788877653 3555553222 32223333333
Q ss_pred HHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcC-CCceEEEeCCCCCHHHHHHHHH-hCCChhh
Q 020423 217 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF-PDLTFTLNGGINTVDEVNAALR-KGAHHVM 294 (326)
Q Consensus 217 ~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~-~~iPVIa~GgI~s~~da~~~l~-~GaD~V~ 294 (326)
.+ .+.|+|.|-.+|.... .....+.++++.+.. .+|+|++.||| +.+.+.++++ +|++-+=
T Consensus 174 ---~L-i~lGvdrILTSG~~~~------------a~~Gl~~Lk~Lv~~a~~rI~ImaGGGV-~~~Ni~~l~~~tG~~~~H 236 (287)
T 3iwp_A 174 ---TL-LTLGFERVLTSGCDSS------------ALEGLPLIKRLIEQAKGRIVVMPGGGI-TDRNLQRILEGSGATEFH 236 (287)
T ss_dssp ---HH-HHHTCSEEEECTTSSS------------TTTTHHHHHHHHHHHTTSSEEEECTTC-CTTTHHHHHHHHCCSEEE
T ss_pred ---HH-HHcCCCEEECCCCCCC------------hHHhHHHHHHHHHHhCCCCEEEECCCc-CHHHHHHHHHhhCCCEEe
Confidence 22 3469999987765320 012366677766543 36999999999 6677788777 8876654
Q ss_pred h
Q 020423 295 V 295 (326)
Q Consensus 295 i 295 (326)
.
T Consensus 237 ~ 237 (287)
T 3iwp_A 237 C 237 (287)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >3cyj_A Mandelate racemase/muconate lactonizing enzyme-LI protein; structural genomics, isomerase, PSI-2; 2.30A {Rubrobacter xylanophilus dsm 9941} | Back alignment and structure |
|---|
Probab=94.77 E-value=0.29 Score=45.78 Aligned_cols=122 Identities=11% Similarity=0.015 Sum_probs=80.2
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCC--CcEEEEeccCCCCCccHH
Q 020423 135 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTN--VPVSVKCRIGVDDHDSYN 212 (326)
Q Consensus 135 ~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~--~pv~vK~r~g~~~~~~~~ 212 (326)
+.+++.+.++.+.+.||..+-+..|. +++.-.+.+++||++++ +.+.+...-+| +.+
T Consensus 144 ~~~~~~~~a~~~~~~G~~~~KiKvG~-----------------~~~~d~~~v~avr~a~g~~~~l~vDaN~~~----~~~ 202 (372)
T 3cyj_A 144 PLRRLQEQLGGWAAAGIPRVKMKVGR-----------------EPEKDPERVRAAREAIGESVELMVDANGAY----TRK 202 (372)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEEECCS-----------------SGGGHHHHHHHHHHHHCTTSEEEEECTTCS----CHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcCCC-----------------CHHHHHHHHHHHHHHhCCCCeEEEECCCCC----CHH
Confidence 46778888888888999999997542 23334567777777764 44444433333 345
Q ss_pred HHHHHHHHHhhhC-CccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCC-ceEEEeCCCCCHHHHHHHHHhCC
Q 020423 213 QLCDFIYKVSSLS-PTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPD-LTFTLNGGINTVDEVNAALRKGA 290 (326)
Q Consensus 213 e~~~~ia~~le~~-Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~-iPVIa~GgI~s~~da~~~l~~Ga 290 (326)
+..+++ +.+++. ++.+|. . ..++.+++.++++.++... +||.+-=.+.+..++.++ ...+
T Consensus 203 ~a~~~~-~~l~~~~~i~~iE----q------------P~~~~d~~~~~~l~~~~~~~ipIa~dE~~~~~~~~~~~-~~a~ 264 (372)
T 3cyj_A 203 QALYWA-GAFAREAGISYLE----E------------PVSSEDREGLRLLRDRGPGGVAIAAGEYEWTLPQLHDL-AGCV 264 (372)
T ss_dssp HHHHHH-HHHHHHHCCCEEE----C------------SSCTTCHHHHHHHHHHSCTTCEEEECTTCCSHHHHHHH-HTTC
T ss_pred HHHHHH-HHHHhhcCCcEEE----C------------CCCcccHHHHHHHHHhCCCCCCEECCCCccCHHHHHHH-hCCC
Confidence 555544 446777 888874 1 1233357777777766522 798888888899988887 6557
Q ss_pred Chhhh
Q 020423 291 HHVMV 295 (326)
Q Consensus 291 D~V~i 295 (326)
|.|++
T Consensus 265 d~i~i 269 (372)
T 3cyj_A 265 DILQA 269 (372)
T ss_dssp SEEEE
T ss_pred CEEec
Confidence 77765
|
| >4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B* | Back alignment and structure |
|---|
Probab=94.77 E-value=0.025 Score=55.45 Aligned_cols=64 Identities=16% Similarity=0.302 Sum_probs=48.4
Q ss_pred HhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhH
Q 020423 221 VSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGR 297 (326)
Q Consensus 221 ~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGR 297 (326)
.|.++|+|.|.|.... |++. ...+.++.+++.++++||| +|.|.|.+.+.++++.|||+|-+|-
T Consensus 288 aLv~AGvD~iviD~ah----Ghs~--------~v~~~i~~ik~~~p~~~vi-aGNVaT~e~a~~Li~aGAD~vkVGi 351 (556)
T 4af0_A 288 LLAEAGLDVVVLDSSQ----GNSV--------YQIEFIKWIKQTYPKIDVI-AGNVVTREQAAQLIAAGADGLRIGM 351 (556)
T ss_dssp HHHHTTCCEEEECCSC----CCSH--------HHHHHHHHHHHHCTTSEEE-EEEECSHHHHHHHHHHTCSEEEECS
T ss_pred HHHhcCCcEEEEeccc----cccH--------HHHHHHHHHHhhCCcceEE-eccccCHHHHHHHHHcCCCEEeecC
Confidence 4457999999997643 2211 1256777888888888865 6888999999999999999987663
|
| >1o4u_A Type II quinolic acid phosphoribosyltransferase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.50A {Thermotoga maritima} SCOP: c.1.17.1 d.41.2.1 | Back alignment and structure |
|---|
Probab=94.77 E-value=0.017 Score=52.45 Aligned_cols=95 Identities=12% Similarity=0.145 Sum_probs=60.7
Q ss_pred HHHHHHHHHhcCC--CcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHH-HH
Q 020423 182 VGEAMSVIAANTN--VPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYE-YY 258 (326)
Q Consensus 182 l~eiv~avr~~~~--~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~-~i 258 (326)
+.+.++++|+..+ .++.|-+ ++.++..+ . .++|+|+|-++.-+ +.... .+
T Consensus 179 i~~av~~ar~~~~~~~~I~VEV-------~tleea~e----A-~~aGaD~I~LDn~~---------------~e~l~~av 231 (285)
T 1o4u_A 179 AERAVQEVRKIIPFTTKIEVEV-------ENLEDALR----A-VEAGADIVMLDNLS---------------PEEVKDIS 231 (285)
T ss_dssp HHHHHHHHHTTSCTTSCEEEEE-------SSHHHHHH----H-HHTTCSEEEEESCC---------------HHHHHHHH
T ss_pred HHHHHHHHHHhCCCCceEEEEe-------CCHHHHHH----H-HHcCCCEEEECCCC---------------HHHHHHHH
Confidence 3456666666653 3455431 23444433 2 34899999887521 11122 22
Q ss_pred HHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhCCc
Q 020423 259 YALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW 304 (326)
Q Consensus 259 ~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~dP~ 304 (326)
..+....+++|+.++||| +++.+.++.++|+|++.+|+....-|+
T Consensus 232 ~~l~~~~~~v~ieASGGI-t~eni~~~a~tGVD~IsvGslt~sa~~ 276 (285)
T 1o4u_A 232 RRIKDINPNVIVEVSGGI-TEENVSLYDFETVDVISSSRLTLQEVF 276 (285)
T ss_dssp HHHHHHCTTSEEEEEECC-CTTTGGGGCCTTCCEEEEGGGTSSCCC
T ss_pred HHhhccCCCceEEEECCC-CHHHHHHHHHcCCCEEEEeHHHcCCCC
Confidence 233222347899999999 789999999999999999997665554
|
| >1ypf_A GMP reductase; GUAC, purines, pyrimidines, nucleosides, nucleotides, nucleo nucleoside interconversions, spine, structural genomics; 1.80A {Bacillus anthracis} PDB: 2a1y_A* | Back alignment and structure |
|---|
Probab=94.70 E-value=0.11 Score=48.24 Aligned_cols=92 Identities=14% Similarity=0.203 Sum_probs=58.7
Q ss_pred HHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHHHHhhhCC--ccEEEEecCCcccCCCCcCCcCCCCCccHHHHH
Q 020423 182 VGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSP--TRHFIIHSRKALLNGISPAENRTIPPLKYEYYY 259 (326)
Q Consensus 182 l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~G--vd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~ 259 (326)
..+.++.+++ .+.|+.+.+ +... ++ .+. ++.+.+.| ++++.++... | .+...++.++
T Consensus 83 ~~~~i~~~~~-~g~~v~v~~--g~~~----~~-~~~-a~~~~~~g~~~~~i~i~~~~----G--------~~~~~~~~i~ 141 (336)
T 1ypf_A 83 RISFIRDMQS-RGLIASISV--GVKE----DE-YEF-VQQLAAEHLTPEYITIDIAH----G--------HSNAVINMIQ 141 (336)
T ss_dssp HHHHHHHHHH-TTCCCEEEE--CCSH----HH-HHH-HHHHHHTTCCCSEEEEECSS----C--------CSHHHHHHHH
T ss_pred HHHHHHHHHh-cCCeEEEeC--CCCH----HH-HHH-HHHHHhcCCCCCEEEEECCC----C--------CcHHHHHHHH
Confidence 4455555544 366777763 3221 11 121 33445688 9999886421 1 0223477888
Q ss_pred HHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhh
Q 020423 260 ALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMV 295 (326)
Q Consensus 260 ~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~i 295 (326)
.+++.....||+ .|.|.+++++..+.+.|||+|.+
T Consensus 142 ~lr~~~~~~~vi-~G~v~s~e~A~~a~~aGad~Ivv 176 (336)
T 1ypf_A 142 HIKKHLPESFVI-AGNVGTPEAVRELENAGADATKV 176 (336)
T ss_dssp HHHHHCTTSEEE-EEEECSHHHHHHHHHHTCSEEEE
T ss_pred HHHHhCCCCEEE-ECCcCCHHHHHHHHHcCCCEEEE
Confidence 888776445554 57789999999999999999999
|
| >3va8_A Probable dehydratase; enolase, magnesium binding site, lyase; 2.00A {Gibberella zeae} | Back alignment and structure |
|---|
Probab=94.69 E-value=0.33 Score=46.74 Aligned_cols=121 Identities=12% Similarity=0.134 Sum_probs=81.7
Q ss_pred CCHHHHHHHHHHHHH-CCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC-CCcEEEEeccCCCCCccH
Q 020423 134 SNLDNLAKATELANA-YNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSY 211 (326)
Q Consensus 134 ~~~~~f~~aA~~a~~-aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~-~~pv~vK~r~g~~~~~~~ 211 (326)
.+++++++.|+.+.+ .||..+-+..|.. +++.-.+.+++||+++ +.++.+-...+| +.
T Consensus 190 ~~~e~~~~~a~~~~~~~Gf~~~KlKvG~~----------------~~~~Di~~v~avRea~~~~~L~vDaN~~w----~~ 249 (445)
T 3va8_A 190 LDPEGVVKQAKKIIDEYGFKAIKLKGGVF----------------PPADEVAAIKALHKAFPGVPLRLDPNAAW----TV 249 (445)
T ss_dssp CSHHHHHHHHHHHHHHHCCSCEEEECSSS----------------CHHHHHHHHHHHHHHSTTCCEEEECTTCB----CH
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEccCCC----------------CHHHHHHHHHHHHHhCCCCcEeeeCCCCC----CH
Confidence 578999999988776 5999999975421 2344456788888877 445555444444 34
Q ss_pred HHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhC-C
Q 020423 212 NQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKG-A 290 (326)
Q Consensus 212 ~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~G-a 290 (326)
++.++ +.+.+++. +.+|. . |..+++.++++.+.. .+||.+.-.+.+..++.++++.| +
T Consensus 250 ~~Ai~-~~~~L~~~-l~~iE----e--------------P~~d~~~~~~l~~~~-~iPIa~dE~~~~~~~~~~~i~~~a~ 308 (445)
T 3va8_A 250 ETSKW-VAKELEGI-VEYLE----D--------------PAGEIEGMAAVAKEA-SMPLATNMAVVAFDHLPPSILQDAV 308 (445)
T ss_dssp HHHHH-HHHHTTTT-CSEEE----S--------------CBSHHHHHHHHHTTC-SSCEEESSSCCSGGGHHHHHHTTCC
T ss_pred HHHHH-HHHHHhhh-cCeEe----e--------------cCcCHHHHHHHHHcC-CCCEEeCCccCCHHHHHHHHHcCCC
Confidence 55555 34566767 77763 0 111466677776654 89988877888899998888865 7
Q ss_pred Chhhh
Q 020423 291 HHVMV 295 (326)
Q Consensus 291 D~V~i 295 (326)
|.|++
T Consensus 309 div~~ 313 (445)
T 3va8_A 309 QVILS 313 (445)
T ss_dssp SEEEE
T ss_pred CEEEe
Confidence 87776
|
| >1o66_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; structural genomics; HET: MSE; 1.75A {Neisseria meningitidis serogroup B} SCOP: c.1.12.8 PDB: 1o68_A* | Back alignment and structure |
|---|
Probab=94.62 E-value=0.31 Score=43.75 Aligned_cols=155 Identities=11% Similarity=0.047 Sum_probs=86.6
Q ss_pred CCCChHHHHHHHHHcCCCcEEEecceeec-ccccccc---chhhhhh----c-CCCCC-cEEEEec-C---CCHHHHHHH
Q 020423 77 MDWTDNHYRTLARLISKHAWLYTEMLAAE-TIIYQQG---NLDRFLA----F-SPEQH-PIVLQIG-G---SNLDNLAKA 142 (326)
Q Consensus 77 ~~~s~~~~r~~~~~~Gg~gli~te~~~~~-~~~~~~~---~~~~~~~----~-~~~~~-piivQL~-g---~~~~~f~~a 142 (326)
.+.=|...+.++.+.| +..+.++..... -+.+.+. ..+.++. + ...+. ++++-+- | .++++..+.
T Consensus 22 ~tayDa~sA~l~e~aG-~d~ilvGdSl~~~~lG~~dt~~vTldemi~h~~aV~r~~~~~~vvaD~pfgsy~~s~~~a~~n 100 (275)
T 1o66_A 22 LTAYESSFAALMDDAG-VEMLLVGDSLGMAVQGRKSTLPVSLRDMCYHTECVARGAKNAMIVSDLPFGAYQQSKEQAFAA 100 (275)
T ss_dssp EECCSHHHHHHHHHTT-CCEEEECTTHHHHTTCCSSSTTCCHHHHHHHHHHHHHHCSSSEEEEECCTTSSSSCHHHHHHH
T ss_pred EeCcCHHHHHHHHHcC-CCEEEECHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhhCCCCeEEEECCCCCccCCHHHHHHH
Confidence 3556777777777765 888877642221 1112111 1122221 1 12333 4555542 2 368888888
Q ss_pred HHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCC-------------CCCc
Q 020423 143 TELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGV-------------DDHD 209 (326)
Q Consensus 143 A~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~-------------~~~~ 209 (326)
|.++.++|+++|.|--+ +...+.++++.+ .++||.--+.+.. .+ +
T Consensus 101 a~rl~kaGa~aVklEdg--------------------~e~~~~I~al~~-agIpV~gHiGLtPQs~~~~ggf~v~grt-~ 158 (275)
T 1o66_A 101 AAELMAAGAHMVKLEGG--------------------VWMAETTEFLQM-RGIPVCAHIGLTPQSVFAFGGYKVQGRG-G 158 (275)
T ss_dssp HHHHHHTTCSEEEEECS--------------------GGGHHHHHHHHH-TTCCEEEEEESCGGGTTC------------
T ss_pred HHHHHHcCCcEEEECCc--------------------HHHHHHHHHHHH-cCCCeEeeeccCceeecccCCeEEEeCh-H
Confidence 88888899999999532 012334444433 3778763322110 11 2
Q ss_pred cHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeC
Q 020423 210 SYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNG 274 (326)
Q Consensus 210 ~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~G 274 (326)
..+++++. ++.++++|+|.|.+.+- | .+..+++.++. ++|+|+-|
T Consensus 159 ~a~~~i~r-A~a~~eAGA~~ivlE~v----------------p--~~~a~~it~~l-~iP~igIG 203 (275)
T 1o66_A 159 KAQALLND-AKAHDDAGAAVVLMECV----------------L--AELAKKVTETV-SCPTIGIG 203 (275)
T ss_dssp CHHHHHHH-HHHHHHTTCSEEEEESC----------------C--HHHHHHHHHHC-SSCEEEES
T ss_pred HHHHHHHH-HHHHHHcCCcEEEEecC----------------C--HHHHHHHHHhC-CCCEEEEC
Confidence 24555553 45678899999998652 1 24456666665 89998865
|
| >1qpo_A Quinolinate acid phosphoribosyl transferase; type II prtase, de novo NAD biosynthesis, PRPP, phosphoribos transferase; 2.40A {Mycobacterium tuberculosis H37RV} SCOP: c.1.17.1 d.41.2.1 PDB: 1qpn_A 1qpq_A* 1qpr_A* | Back alignment and structure |
|---|
Probab=94.61 E-value=0.058 Score=48.89 Aligned_cols=94 Identities=14% Similarity=0.166 Sum_probs=59.9
Q ss_pred HHHHHHHHhcCC-CcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccH-HHHHH
Q 020423 183 GEAMSVIAANTN-VPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKY-EYYYA 260 (326)
Q Consensus 183 ~eiv~avr~~~~-~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~-~~i~~ 260 (326)
.+.++++|+..+ .++.|-+. +.++..+ .+ ++|+|.|-++.-+. ... +.+..
T Consensus 182 ~~av~~ar~~~~~~~I~Vev~-------t~eea~e----al-~aGaD~I~LDn~~~---------------~~~~~~v~~ 234 (284)
T 1qpo_A 182 VDALRAVRNAAPDLPCEVEVD-------SLEQLDA----VL-PEKPELILLDNFAV---------------WQTQTAVQR 234 (284)
T ss_dssp HHHHHHHHHHCTTSCEEEEES-------SHHHHHH----HG-GGCCSEEEEETCCH---------------HHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCEEEEeC-------CHHHHHH----HH-HcCCCEEEECCCCH---------------HHHHHHHHH
Confidence 455666666542 24544322 3444332 33 48999998885321 112 23333
Q ss_pred HHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhCCc
Q 020423 261 LLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW 304 (326)
Q Consensus 261 i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~dP~ 304 (326)
+....+++++.++||| +++.+.++.+.|+|.+.+|+....-|+
T Consensus 235 l~~~~~~v~ieaSGGI-t~~~i~~~a~tGVD~isvG~l~~~a~~ 277 (284)
T 1qpo_A 235 RDSRAPTVMLESSGGL-SLQTAATYAETGVDYLAVGALTHSVRV 277 (284)
T ss_dssp HHHHCTTCEEEEESSC-CTTTHHHHHHTTCSEEECGGGTSSBCC
T ss_pred hhccCCCeEEEEECCC-CHHHHHHHHhcCCCEEEECHHHcCCCC
Confidence 3333457899999999 899999999999999999996555554
|
| >3qw3_A Orotidine-5-phosphate decarboxylase/orotate phosphoribosyltransferase, putative (OMPDCASE-OPRTASE,...; orotidine monophosphate decarboxylase; 1.70A {Leishmania infantum} | Back alignment and structure |
|---|
Probab=94.55 E-value=0.93 Score=40.22 Aligned_cols=141 Identities=15% Similarity=0.127 Sum_probs=78.7
Q ss_pred CCCcEEEEec-CCCHHHHHHHHHHHH-HCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEE
Q 020423 123 EQHPIVLQIG-GSNLDNLAKATELAN-AYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVK 200 (326)
Q Consensus 123 ~~~piivQL~-g~~~~~f~~aA~~a~-~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK 200 (326)
.+.++++-+- |.-+.....+++.+. ++|+|.|.+|. ||| . ++++...+..+.-+.|=
T Consensus 75 ~g~~VflDlK~~DI~nTv~~~a~~~~~~lg~d~vTvh~------------~~G-----~----~~l~~~~~~~~~gv~vL 133 (255)
T 3qw3_A 75 AGIPVVLDAKRGDIADTADAYATSAFKHLNAHAITASP------------YMG-----S----DSLQPFMRYPDKAVFVL 133 (255)
T ss_dssp TTCCBEEEEEECCCHHHHHHHHHHHHTTSCCSEEEECC------------TTC-----H----HHHHHHHTCTTSEEEEE
T ss_pred CCCeEEEEeecCCcHHHHHHHHHHHHHHcCCCEEEEcc------------cCC-----H----HHHHHHHHhhCCceEEE
Confidence 5778888874 434555556666664 69999999984 343 1 34444444334444443
Q ss_pred eccCCC------CC----ccH-HHHHHHHHHH-hhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCc
Q 020423 201 CRIGVD------DH----DSY-NQLCDFIYKV-SSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDL 268 (326)
Q Consensus 201 ~r~g~~------~~----~~~-~e~~~~ia~~-le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~i 268 (326)
.+.+.+ +. .++ +.+.+ .++. ..+.|.|.++++... -+.+..+++..++.
T Consensus 134 ~~tS~~~~~~~q~~~~~~~~~~~~V~~-~a~~~~~~~g~~GvV~~at~------------------~~e~~~ir~~~~~~ 194 (255)
T 3qw3_A 134 CKTSNKGSNDLQCLRVGDRYLYEAVAE-RAEGPWNVNGNVGLVVGATD------------------PVALARVRARAPTL 194 (255)
T ss_dssp EECCSGGGGTTTTSEETTEEHHHHHHH-HHHTGGGGGSCEEEEECSSC------------------HHHHHHHHHHCSSC
T ss_pred EeCCCccHHHHHhcccCCCCHHHHHHH-HHHHHhhhhCCeEEEECCCC------------------HHHHHHHHHHCCCC
Confidence 333211 11 122 33333 2333 445899999776421 12344555555565
Q ss_pred eEEEeCCCCC-HHHHHHHHHhCCC----h--hhhhHHHHhCCc
Q 020423 269 TFTLNGGINT-VDEVNAALRKGAH----H--VMVGRAAYQNPW 304 (326)
Q Consensus 269 PVIa~GgI~s-~~da~~~l~~GaD----~--V~iGRall~dP~ 304 (326)
+++ +=||.- ..+..++++.|+| . +.+||+++.-++
T Consensus 195 ~~l-~PGIg~qg~tp~~a~~~G~d~~~~~~livvGR~I~~A~d 236 (255)
T 3qw3_A 195 WFL-VPGIGAQGGSLKASLDAGLRADGSGMLINVSRGLARAAD 236 (255)
T ss_dssp CEE-ECCC-----CHHHHHHHHCCTTSCCEEEEESHHHHTSSC
T ss_pred eEE-ECCcCCCCCCHHHHHHcCCCcccCeeEEEeChhhcCCCC
Confidence 654 444432 2245667778888 4 999999998665
|
| >1nsj_A PRAI, phosphoribosyl anthranilate isomerase; thermostability; 2.00A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1lbm_A 1dl3_A | Back alignment and structure |
|---|
Probab=94.50 E-value=0.62 Score=39.93 Aligned_cols=176 Identities=10% Similarity=0.080 Sum_probs=91.9
Q ss_pred CCCChHHHHHHHHHcCCCcEEEecceeeccccccccchhhhhh-cCCCCCcEEEEecCC-CHHHHHHHHHHHHHCCCCEE
Q 020423 77 MDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLA-FSPEQHPIVLQIGGS-NLDNLAKATELANAYNYDEI 154 (326)
Q Consensus 77 ~~~s~~~~r~~~~~~Gg~gli~te~~~~~~~~~~~~~~~~~~~-~~~~~~piivQL~g~-~~~~f~~aA~~a~~aG~d~I 154 (326)
+|.++.+=...+.+.| ++.+..-+....+..-..++...+.. +.+.- ..+-++.+ +++ +..+.+.+++.|.|
T Consensus 7 CGit~~eda~~a~~~G-aD~iGfif~~~SpR~V~~~~a~~i~~~~~~~~--~~VgVfvn~~~~---~i~~~~~~~~ld~v 80 (205)
T 1nsj_A 7 CGITNLEDALFSVESG-ADAVGFVFYPKSKRYISPEDARRISVELPPFV--FRVGVFVNEEPE---KILDVASYVQLNAV 80 (205)
T ss_dssp CCCCSHHHHHHHHHHT-CSEEEEECCTTCTTBCCHHHHHHHHHHSCSSS--EEEEEESSCCHH---HHHHHHHHHTCSEE
T ss_pred CCCCcHHHHHHHHHcC-CCEEEEEecCCCCCcCCHHHHHHHHHhCCCCC--CEEEEEeCCCHH---HHHHHHHhhCCCEE
Confidence 5677766555555555 55543333222222111222233322 22222 33333433 433 44455667789999
Q ss_pred EecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEec
Q 020423 155 NLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHS 234 (326)
Q Consensus 155 ein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~ 234 (326)
.+|.. ..++++. .+|+ +.|++--++.. +. .++. .. .+..+|++-+.+
T Consensus 81 QLHG~-----------------e~~~~~~----~l~~--~~~vika~~v~--~~---~~l~----~~-~~~~~d~~LlD~ 127 (205)
T 1nsj_A 81 QLHGE-----------------EPIELCR----KIAE--RILVIKAVGVS--NE---RDME----RA-LNYREFPILLDT 127 (205)
T ss_dssp EECSC-----------------CCHHHHH----HHHT--TSEEEEEEEES--SH---HHHH----HH-GGGTTSCEEEEE
T ss_pred EECCC-----------------CCHHHHH----HHhc--CCCEEEEEEcC--CH---HHHH----HH-HHcCCCEEEECC
Confidence 99942 1233333 3332 35766555553 11 1221 11 122389998876
Q ss_pred CCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHH-hCCChhhhhHHHHh
Q 020423 235 RKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQ 301 (326)
Q Consensus 235 ~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~-~GaD~V~iGRall~ 301 (326)
....++|. + .+.+|+.+.... . .+.|++.+||+ +++.+.++++ .++.+|=+.+++=.
T Consensus 128 ~~~~~GGt-G------~~fdw~~l~~~~-~-~~~p~~LAGGL-~peNV~~ai~~~~p~gVDvsSGvE~ 185 (205)
T 1nsj_A 128 KTPEYGGS-G------KTFDWSLILPYR-D-RFRYLVLSGGL-NPENVRSAIDVVRPFAVDVSSGVEA 185 (205)
T ss_dssp SCSSSSSC-C------SCCCGGGTGGGG-G-GSSCEEEESSC-CTTTHHHHHHHHCCSEEEESGGGEE
T ss_pred CCCCCCCC-C------CccCHHHHHhhh-c-CCCcEEEECCC-CHHHHHHHHHhcCCCEEEECCceec
Confidence 43322232 1 234576554321 1 26799999999 8888888876 68888888877653
|
| >1xg4_A Probable methylisocitrate lyase; 2-methylisocitrate lyase/inhibitor complex, isocitrate lyase superfamily; HET: ICT; 1.60A {Escherichia coli} PDB: 1xg3_A* 1mum_A 1oqf_A 1ujq_A 1o5q_A | Back alignment and structure |
|---|
Probab=94.49 E-value=0.38 Score=43.71 Aligned_cols=180 Identities=16% Similarity=0.157 Sum_probs=94.3
Q ss_pred hcCCCCCcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCC-CCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcE
Q 020423 119 AFSPEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCG-CPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPV 197 (326)
Q Consensus 119 ~~~~~~~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g-~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv 197 (326)
+.+..+.|+. =+...+ .-.|+.+.++|||.|=+..+ .-.......|. ..-..+.+.+.++.|.+.++.||
T Consensus 11 ~l~~~~~~i~-~~~a~D----~~sA~~~~~aG~~ai~vs~~~~a~~~~G~pD~----~~vt~~em~~~~~~I~~~~~~Pv 81 (295)
T 1xg4_A 11 AALTKENPLQ-IVGTIN----ANHALLAQRAGYQAIYLSGGGVAAGSLGLPDL----GISTLDDVLTDIRRITDVCSLPL 81 (295)
T ss_dssp HHHHHSSSEE-EEECSS----HHHHHHHHHTTCSCEEECHHHHHHTTTCCCSS----SCSCHHHHHHHHHHHHHHCCSCE
T ss_pred HHHhCCCcEE-EecCcC----HHHHHHHHHcCCCEEEECchHhhhhhcCCCCC----CCCCHHHHHHHHHHHHhhCCCCE
Confidence 3343444443 234455 33577888899999988422 00000011111 12346667777888888889999
Q ss_pred EEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCc-ccCCCCcCCcCCCCCc-cHHHHHHHHhcCCCceEEEeCC
Q 020423 198 SVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKA-LLNGISPAENRTIPPL-KYEYYYALLRDFPDLTFTLNGG 275 (326)
Q Consensus 198 ~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~-~~~g~~~~~~~~~~~~-~~~~i~~i~~~~~~iPVIa~Gg 275 (326)
++-+-.|+.. +.+...+.+.+ ++++|++.|++.+... ...|+.+ .....+.. ..+.++..++...+.++...|.
T Consensus 82 iaD~d~Gyg~--~~~~~~~~v~~-l~~aGa~gv~iEd~~~~k~cgH~~-gk~L~p~~~~~~~I~Aa~~a~~~~~~~i~aR 157 (295)
T 1xg4_A 82 LVDADIGFGS--SAFNVARTVKS-MIKAGAAGLHIEDQVGAKRSGHRP-NKAIVSKEEMVDRIRAAVDAKTDPDFVIMAR 157 (295)
T ss_dssp EEECTTCSSS--SHHHHHHHHHH-HHHHTCSEEEEECBCSSCCCTTSS-SCCBCCHHHHHHHHHHHHHHCSSTTSEEEEE
T ss_pred EecCCcccCC--CHHHHHHHHHH-HHHcCCeEEEECCCCCCcccCCCC-CCccCCHHHHHHHHHHHHHhccCCCcEEEEe
Confidence 9999888542 23344444444 4469999999987642 1112211 00111111 1224444444433445555555
Q ss_pred CCCH---------HHHHHHHHhCCChhhhhHHHHhCCchhHHhHHHhh
Q 020423 276 INTV---------DEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAI 314 (326)
Q Consensus 276 I~s~---------~da~~~l~~GaD~V~iGRall~dP~l~~~~i~~~~ 314 (326)
.... +++..+.+.|||+|.+=- +.+++ ..+.+.+.+
T Consensus 158 tda~~~~gl~~ai~ra~ay~eAGAd~i~~e~--~~~~~-~~~~i~~~~ 202 (295)
T 1xg4_A 158 TDALAVEGLDAAIERAQAYVEAGAEMLFPEA--ITELA-MYRQFADAV 202 (295)
T ss_dssp ECCHHHHCHHHHHHHHHHHHHTTCSEEEETT--CCSHH-HHHHHHHHH
T ss_pred cHHhhhcCHHHHHHHHHHHHHcCCCEEEEeC--CCCHH-HHHHHHHHc
Confidence 4432 233344458999998732 23434 344444444
|
| >2bdq_A Copper homeostasis protein CUTC; alpha beta protein, structural genomics, PSI, protein structure initiative; 2.30A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=94.49 E-value=0.67 Score=40.28 Aligned_cols=129 Identities=11% Similarity=0.092 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHH
Q 020423 137 DNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 216 (326)
Q Consensus 137 ~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~ 216 (326)
+.+.+-.+.++++|+|||-+-+-.+.. . -+.+.+.+++++.. +.++++-..+......+..+.++
T Consensus 76 ~~M~~Di~~~~~~GadGvV~G~Lt~dg------~------iD~~~~~~Li~~a~---~~~vTFHRAFD~~~~~d~~~ale 140 (224)
T 2bdq_A 76 RIMEEDILRAVELESDALVLGILTSNN------H------IDTEAIEQLLPATQ---GLPLVFHMAFDVIPKSDQKKSID 140 (224)
T ss_dssp HHHHHHHHHHHHTTCSEEEECCBCTTS------S------BCHHHHHHHHHHHT---TCCEEECGGGGGSCTTTHHHHHH
T ss_pred HHHHHHHHHHHHcCCCEEEEeeECCCC------C------cCHHHHHHHHHHhC---CCeEEEECchhccCCcCHHHHHH
Confidence 344556678899999999996543321 1 35677788887653 56766643442110022333322
Q ss_pred HHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcC-CCceEEEeCCCCCHHHHHHHHH-hCCChhh
Q 020423 217 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF-PDLTFTLNGGINTVDEVNAALR-KGAHHVM 294 (326)
Q Consensus 217 ~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~-~~iPVIa~GgI~s~~da~~~l~-~GaD~V~ 294 (326)
.+.+.|++.|--||...... -....+.++++.+.. .++-|+..||| +.+.+.++++ +|++-+=
T Consensus 141 ----~L~~lGv~rILTSG~~~~~~----------a~~g~~~L~~Lv~~a~~ri~Im~GgGV-~~~Ni~~l~~~tGv~e~H 205 (224)
T 2bdq_A 141 ----QLVALGFTRILLHGSSNGEP----------IIENIKHIKALVEYANNRIEIMVGGGV-TAENYQYICQETGVKQAH 205 (224)
T ss_dssp ----HHHHTTCCEEEECSCSSCCC----------GGGGHHHHHHHHHHHTTSSEEEECSSC-CTTTHHHHHHHHTCCEEE
T ss_pred ----HHHHcCCCEEECCCCCCCCc----------HHHHHHHHHHHHHhhCCCeEEEeCCCC-CHHHHHHHHHhhCCCEEc
Confidence 34467999998776542100 011256666665543 36888888998 5566777774 7877665
Q ss_pred h
Q 020423 295 V 295 (326)
Q Consensus 295 i 295 (326)
.
T Consensus 206 ~ 206 (224)
T 2bdq_A 206 G 206 (224)
T ss_dssp E
T ss_pred c
Confidence 4
|
| >4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3} | Back alignment and structure |
|---|
Probab=94.45 E-value=0.25 Score=43.36 Aligned_cols=63 Identities=22% Similarity=0.103 Sum_probs=49.9
Q ss_pred HHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhh
Q 020423 218 IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVG 296 (326)
Q Consensus 218 ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iG 296 (326)
+++.+.+.|++.|.+.-++. ...+.++++++++++ .+++.|-+.+.++++.+++.|||+|...
T Consensus 51 ~a~al~~gGi~~iEvt~~t~---------------~a~e~I~~l~~~~~~-~~iGaGTVlt~~~a~~Ai~AGA~fIvsP 113 (232)
T 4e38_A 51 LGKVLAENGLPAAEITFRSD---------------AAVEAIRLLRQAQPE-MLIGAGTILNGEQALAAKEAGATFVVSP 113 (232)
T ss_dssp HHHHHHHTTCCEEEEETTST---------------THHHHHHHHHHHCTT-CEEEEECCCSHHHHHHHHHHTCSEEECS
T ss_pred HHHHHHHCCCCEEEEeCCCC---------------CHHHHHHHHHHhCCC-CEEeECCcCCHHHHHHHHHcCCCEEEeC
Confidence 34455679999999975432 136778888877755 6899999999999999999999999864
|
| >1wue_A Mandelate racemase/muconate lactonizing enzyme FA protein; structural genomics, unknown function, nysgxrc target T2185; 2.10A {Enterococcus faecalis} SCOP: c.1.11.2 d.54.1.1 | Back alignment and structure |
|---|
Probab=94.45 E-value=0.085 Score=49.77 Aligned_cols=120 Identities=18% Similarity=0.245 Sum_probs=79.4
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC-CCcEEEEeccCCCCCccHH
Q 020423 134 SNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYN 212 (326)
Q Consensus 134 ~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~-~~pv~vK~r~g~~~~~~~~ 212 (326)
.+++++.+.++.+.+.||..+-+..+ | ..+ .+.+++||+.+ +..+.+-...+|+. +
T Consensus 160 ~~~~~~~~~a~~~~~~G~~~~KiKvg-~--------------~~d----~~~v~avr~a~~~~~l~vDaN~~~~~----~ 216 (386)
T 1wue_A 160 EDLPQLLKQVQLAVEKGYQRVKLKIR-P--------------GYD----VEPVALIRQHFPNLPLMVDANSAYTL----A 216 (386)
T ss_dssp SCHHHHHHHHHHHHHTTCSCEEEECB-T--------------TBS----HHHHHHHHHHCTTSCEEEECTTCCCG----G
T ss_pred CCHHHHHHHHHHHHHhhhheEEEeeC-c--------------HHH----HHHHHHHHHhCCCCeEEEeCCCCCCH----H
Confidence 46899999898888999999998754 1 012 24467777765 44555555445542 2
Q ss_pred HHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhC-CC
Q 020423 213 QLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKG-AH 291 (326)
Q Consensus 213 e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~G-aD 291 (326)
+. ++ .+.+++.++.+|. . ..++.+++.++++.++. .+||.+-=.+.+.+++.++++.+ +|
T Consensus 217 ~a-~~-~~~l~~~~i~~iE----q------------P~~~~d~~~~~~l~~~~-~ipIa~dE~~~~~~~~~~~i~~~a~d 277 (386)
T 1wue_A 217 DL-PQ-LQRLDHYQLAMIE----Q------------PFAADDFLDHAQLQREL-KTRICLDENIRSLKDCQVALALGSCR 277 (386)
T ss_dssp GH-HH-HHGGGGSCCSCEE----C------------CSCTTCSHHHHHHHTTC-SSCEEECTTCCSHHHHHHHHHHTCCS
T ss_pred HH-HH-HHHHHhCCCeEEe----C------------CCCcccHHHHHHHHHhc-CCCEEeCCccCCHHHHHHHHHcCCCC
Confidence 33 33 4567788887774 1 11233466666766654 78888877888888888888855 77
Q ss_pred hhhh
Q 020423 292 HVMV 295 (326)
Q Consensus 292 ~V~i 295 (326)
.|++
T Consensus 278 ~i~i 281 (386)
T 1wue_A 278 SINL 281 (386)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7765
|
| >3vdg_A Probable glucarate dehydratase; enolase, magnesium binding site, lyase; 1.90A {Mycobacterium smegmatis str} PDB: 3vfc_A* | Back alignment and structure |
|---|
Probab=94.41 E-value=0.41 Score=46.03 Aligned_cols=121 Identities=12% Similarity=0.098 Sum_probs=82.1
Q ss_pred CCHHHHHHHHHHHHH-CCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC-CCcEEEEeccCCCCCccH
Q 020423 134 SNLDNLAKATELANA-YNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSY 211 (326)
Q Consensus 134 ~~~~~f~~aA~~a~~-aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~-~~pv~vK~r~g~~~~~~~ 211 (326)
.+++++++.|+.+.+ .||..+-+..|.. +++.-.+.+++||+++ +.++.+-...+| +.
T Consensus 192 ~~~e~~~~~a~~~~~~~Gf~~~KlKvG~~----------------~~~~Di~~v~avRea~~d~~L~vDaN~~w----~~ 251 (445)
T 3vdg_A 192 LDPDGIVAQARRMIDEYGFSAIKLKGGVF----------------APEEEMAAVEALRAAFPDHPLRLDPNAAW----TP 251 (445)
T ss_dssp CSHHHHHHHHHHHHHHHCCSSEEEECSSS----------------CHHHHHHHHHHHHHHCTTSCEEEECTTCS----CH
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEECCCCC----------------CHHHHHHHHHHHHHhCCCCcEEEECCCCC----CH
Confidence 578999999988776 5999999975421 2344456788888877 445655544444 34
Q ss_pred HHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhC-C
Q 020423 212 NQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKG-A 290 (326)
Q Consensus 212 ~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~G-a 290 (326)
++.++ +.+.+++. +.+|. . + . .+++.++++.+.. .+||.+.-.+.+..++.++++.| +
T Consensus 252 ~~Ai~-~~~~L~~~-l~~iE----e-----------P-~--~~~~~~~~l~~~~-~iPIa~dE~~~~~~~~~~~l~~~a~ 310 (445)
T 3vdg_A 252 QTSVK-VAAGLEGV-LEYLE----D-----------P-T--PGLDGMAEVAAQA-PMPLATNMCVVAFDQLPAAVAKNSV 310 (445)
T ss_dssp HHHHH-HHHHTTTT-CSEEE----C-----------C-S--SSHHHHHHHHHHC-SSCEEESSSCCSGGGHHHHHHHTCC
T ss_pred HHHHH-HHHHHhhH-HHeee----C-----------C-C--CCHHHHHHHHhcC-CCCEEcCCcCCCHHHHHHHHHcCCC
Confidence 45555 34566777 77763 1 1 1 1366677777664 89988877888899998888865 7
Q ss_pred Chhhh
Q 020423 291 HHVMV 295 (326)
Q Consensus 291 D~V~i 295 (326)
|.|++
T Consensus 311 div~~ 315 (445)
T 3vdg_A 311 QVVLS 315 (445)
T ss_dssp SEEEE
T ss_pred CEEee
Confidence 87776
|
| >2wqp_A Polysialic acid capsule biosynthesis protein SIAC; NEUB, inhibitor, TIM barrel, sialic acid synthase, transfera; HET: WQP; 1.75A {Neisseria meningitidis} PDB: 2zdr_A 1xuz_A* 1xuu_A 3cm4_A | Back alignment and structure |
|---|
Probab=94.41 E-value=0.61 Score=43.34 Aligned_cols=203 Identities=11% Similarity=0.041 Sum_probs=108.8
Q ss_pred cccccCeec---CCcEEEccCCC--CChHHHH----HHHHHcCCCcEEEecceeeccccccccchhhhhhcCCCCCcEEE
Q 020423 59 AEMVARQYL---PPWFSVAPMMD--WTDNHYR----TLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVL 129 (326)
Q Consensus 59 p~~ig~~~l---~nrivlAPM~~--~s~~~~r----~~~~~~Gg~gli~te~~~~~~~~~~~~~~~~~~~~~~~~~piiv 129 (326)
.++||+..+ .+.+|+|.+.. ..+.+.. ..+++.| +..+=.....++.+...+. ..+ ...+ + .-
T Consensus 6 ~i~i~~~~iG~~~~~~iIAe~g~NH~gs~e~a~~li~~ak~aG-adavKfq~~k~~tl~s~~~--~~f---q~~~-~-~~ 77 (349)
T 2wqp_A 6 EFKIGNRSVGYNHEPLIICEIGINHEGSLKTAFEMVDAAYNAG-AEVVKHQTHIVEDEMSDEA--KQV---IPGN-A-DV 77 (349)
T ss_dssp EEEETTEEEETTSCCEEEEEEETTTTTCHHHHHHHHHHHHHHT-CSEEEEEECCHHHHCCGGG--GGC---CCTT-C-SS
T ss_pred eEEECCEEECCCCceEEEEecCCcccCCHHHHHHHHHHHHHhC-CCEEeeeecccccccCcch--hcc---ccCC-C-Cc
Confidence 367777665 24789998864 3333322 2345555 6766555444443211111 001 0000 0 00
Q ss_pred Ee------cCCCHHHHHHHHHHHHHCCCCEEEecC-----------CCCCCcccCCCCccccccCCHHHHHHHHHHHHhc
Q 020423 130 QI------GGSNLDNLAKATELANAYNYDEINLNC-----------GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAAN 192 (326)
Q Consensus 130 QL------~g~~~~~f~~aA~~a~~aG~d~Iein~-----------g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~ 192 (326)
|+ .+-..+++....+.+++.|.+.+---+ +.|.-+ -|+.-+++..++.++ ..
T Consensus 78 ~~y~~~~~~~l~~e~~~~L~~~~~~~Gi~~~st~~d~~svd~l~~~~v~~~K------I~S~~~~n~~LL~~v-----a~ 146 (349)
T 2wqp_A 78 SIYEIMERCALNEEDEIKLKEYVESKGMIFISTLFSRAAALRLQRMDIPAYK------IGSGECNNYPLIKLV-----AS 146 (349)
T ss_dssp CHHHHHHHHCCCHHHHHHHHHHHHHTTCEEEEEECSHHHHHHHHHHTCSCEE------ECGGGTTCHHHHHHH-----HT
T ss_pred cHHHHHHHhCCCHHHHHHHHHHHHHhCCeEEEeeCCHHHHHHHHhcCCCEEE------ECcccccCHHHHHHH-----Hh
Confidence 11 123456666666777777755543311 122211 244455676665554 23
Q ss_pred CCCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEE
Q 020423 193 TNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTL 272 (326)
Q Consensus 193 ~~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa 272 (326)
.+.||.+|.-.. +++|+... ++.+...|.+.+-+|+-..+ . . .....++..+..+++.++++||..
T Consensus 147 ~gkPviLstGma-----t~~Ei~~A-ve~i~~~G~~iiLlhc~s~Y-p--~-----~~~~~nL~ai~~lk~~f~~lpVg~ 212 (349)
T 2wqp_A 147 FGKPIILSTGMN-----SIESIKKS-VEIIREAGVPYALLHCTNIY-P--T-----PYEDVRLGGMNDLSEAFPDAIIGL 212 (349)
T ss_dssp TCSCEEEECTTC-----CHHHHHHH-HHHHHHHTCCEEEEECCCCS-S--C-----CGGGCCTHHHHHHHHHCTTSEEEE
T ss_pred cCCeEEEECCCC-----CHHHHHHH-HHHHHHcCCCEEEEeccCCC-C--C-----ChhhcCHHHHHHHHHHCCCCCEEe
Confidence 689999985442 45555543 33444567788888864322 1 1 112345667777776655799987
Q ss_pred eCCCCCHHHHHHHHHhCCChhh
Q 020423 273 NGGINTVDEVNAALRKGAHHVM 294 (326)
Q Consensus 273 ~GgI~s~~da~~~l~~GaD~V~ 294 (326)
++--....-+..++..|||.|-
T Consensus 213 sdHt~G~~~~~AAvAlGA~iIE 234 (349)
T 2wqp_A 213 SDHTLDNYACLGAVALGGSILE 234 (349)
T ss_dssp ECCSSSSHHHHHHHHHTCCEEE
T ss_pred CCCCCcHHHHHHHHHhCCCEEE
Confidence 7654446667778889999543
|
| >3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0 | Back alignment and structure |
|---|
Probab=94.40 E-value=2.5 Score=38.14 Aligned_cols=137 Identities=15% Similarity=0.107 Sum_probs=83.4
Q ss_pred CCCcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEec
Q 020423 123 EQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCR 202 (326)
Q Consensus 123 ~~~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r 202 (326)
...|+++...+.+.++-.+.++.++++|+|++-+- .|.-+ . ...+-+.+-.++|.++++.|+.+=--
T Consensus 75 grvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~--~P~y~-~----------~~~~~l~~~f~~va~a~~lPiilYn~ 141 (297)
T 3flu_A 75 KRVPVIAGTGANNTVEAIALSQAAEKAGADYTLSV--VPYYN-K----------PSQEGIYQHFKTIAEATSIPMIIYNV 141 (297)
T ss_dssp TSSCEEEECCCSSHHHHHHHHHHHHHTTCSEEEEE--CCCSS-C----------CCHHHHHHHHHHHHHHCCSCEEEEEC
T ss_pred CCCcEEEeCCCcCHHHHHHHHHHHHHcCCCEEEEC--CCCCC-C----------CCHHHHHHHHHHHHHhCCCCEEEEEC
Confidence 45799999998999999999999999999999885 34321 1 12456777788888888999987532
Q ss_pred ---cCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcC-CCceEEEeCCCCC
Q 020423 203 ---IGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF-PDLTFTLNGGINT 278 (326)
Q Consensus 203 ---~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~-~~iPVIa~GgI~s 278 (326)
.|.+- +.+ + +.++.+.-.+..|--+. .++..+.++++.. .++.| .+|.
T Consensus 142 P~~tg~~l--~~~-~---~~~La~~pnivgiKdss------------------gd~~~~~~~~~~~~~~f~v-~~G~--- 193 (297)
T 3flu_A 142 PGRTVVSM--TND-T---ILRLAEIPNIVGVKEAS------------------GNIGSNIELINRAPEGFVV-LSGD--- 193 (297)
T ss_dssp HHHHSSCC--CHH-H---HHHHTTSTTEEEEEECS------------------CCHHHHHHHHHHSCTTCEE-EECC---
T ss_pred CchhccCC--CHH-H---HHHHHcCCCEEEEEeCC------------------CCHHHHHHHHHhcCCCeEE-EECc---
Confidence 22222 222 2 23333222343333221 1244455555443 24444 5553
Q ss_pred HHHHHHHHHhCCChhhhhHHHH
Q 020423 279 VDEVNAALRKGAHHVMVGRAAY 300 (326)
Q Consensus 279 ~~da~~~l~~GaD~V~iGRall 300 (326)
-+.+...+..|++++..+.+-+
T Consensus 194 d~~~l~~l~~G~~G~is~~an~ 215 (297)
T 3flu_A 194 DHTALPFMLCGGHGVITVAANA 215 (297)
T ss_dssp GGGHHHHHHTTCCEEEESGGGT
T ss_pred HHHHHHHHhCCCCEEEechHhh
Confidence 2335567778888887766543
|
| >1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2 PDB: 1h1z_A | Back alignment and structure |
|---|
Probab=94.34 E-value=0.14 Score=44.60 Aligned_cols=134 Identities=13% Similarity=0.115 Sum_probs=77.8
Q ss_pred CCcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecC--CCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEe
Q 020423 124 QHPIVLQIGGSNLDNLAKATELANAYNYDEINLNC--GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKC 201 (326)
Q Consensus 124 ~~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~--g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~ 201 (326)
...++..|...+...+.+.++.+.++|+|.+++-. |.-.++ . .+| .++++++|+.++.|+.+-+
T Consensus 6 ~~~i~psi~a~d~~~l~~~i~~~~~~Gad~i~l~i~Dg~fv~~-~---~~~----------~~~~~~lr~~~~~~~~v~l 71 (228)
T 1h1y_A 6 AAKIAPSMLSSDFANLAAEADRMVRLGADWLHMDIMDGHFVPN-L---TIG----------APVIQSLRKHTKAYLDCHL 71 (228)
T ss_dssp CCEEEEBGGGSCGGGHHHHHHHHHHTTCSEEEEEEEBSSSSSC-B---CBC----------HHHHHHHHTTCCSEEEEEE
T ss_pred CCeEEEEeeeCCHHHHHHHHHHHHHcCCCEEEEEEecCCcCcc-h---hhC----------HHHHHHHHhhcCCcEEEEE
Confidence 34567788888888899999999999999987753 111111 0 122 3667777877766777655
Q ss_pred ccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCcc-HHHHHHHHhcCCCceEEEeCCCCCHH
Q 020423 202 RIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLK-YEYYYALLRDFPDLTFTLNGGINTVD 280 (326)
Q Consensus 202 r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~-~~~i~~i~~~~~~iPVIa~GgI~s~~ 280 (326)
-.. +... . +.... ++|+|.+++|+... +.. .+.+.++. +. ++.++..=.-.++.
T Consensus 72 mv~--d~~~---~---i~~~~-~agad~v~vH~~~~--------------~~~~~~~~~~i~-~~-g~~igv~~~p~t~~ 126 (228)
T 1h1y_A 72 MVT--NPSD---Y---VEPLA-KAGASGFTFHIEVS--------------RDNWQELIQSIK-AK-GMRPGVSLRPGTPV 126 (228)
T ss_dssp ESS--CGGG---G---HHHHH-HHTCSEEEEEGGGC--------------TTTHHHHHHHHH-HT-TCEEEEEECTTSCG
T ss_pred Eec--CHHH---H---HHHHH-HcCCCEEEECCCCc--------------ccHHHHHHHHHH-Hc-CCCEEEEEeCCCCH
Confidence 552 2211 1 12222 48999999997531 011 23344443 33 55554433434444
Q ss_pred H-HHHHHHh--CCChhhhh
Q 020423 281 E-VNAALRK--GAHHVMVG 296 (326)
Q Consensus 281 d-a~~~l~~--GaD~V~iG 296 (326)
+ +...+.. ++|.|.++
T Consensus 127 e~~~~~~~~~~~~d~vl~~ 145 (228)
T 1h1y_A 127 EEVFPLVEAENPVELVLVM 145 (228)
T ss_dssp GGGHHHHHSSSCCSEEEEE
T ss_pred HHHHHHHhcCCCCCEEEEE
Confidence 3 4444443 89999873
|
| >4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=94.30 E-value=0.045 Score=53.49 Aligned_cols=62 Identities=21% Similarity=0.231 Sum_probs=48.0
Q ss_pred hhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhh
Q 020423 222 SSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVG 296 (326)
Q Consensus 222 le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iG 296 (326)
+.++|+|.|.++.... . .....+.++++++.++++||++ |++.+.+++.++.+.|||+|.+|
T Consensus 237 l~~aG~d~I~id~a~g----~--------~~~~~~~v~~i~~~~p~~~Vi~-g~v~t~e~a~~l~~aGaD~I~vg 298 (490)
T 4avf_A 237 LVAAGVDVVVVDTAHG----H--------SKGVIERVRWVKQTFPDVQVIG-GNIATAEAAKALAEAGADAVKVG 298 (490)
T ss_dssp HHHTTCSEEEEECSCC----S--------BHHHHHHHHHHHHHCTTSEEEE-EEECSHHHHHHHHHTTCSEEEEC
T ss_pred HhhcccceEEecccCC----c--------chhHHHHHHHHHHHCCCceEEE-eeeCcHHHHHHHHHcCCCEEEEC
Confidence 3468999999985431 1 1123567888888777889887 77999999999999999999874
|
| >3gnn_A Nicotinate-nucleotide pyrophosphorylase; decode biostructures, ssgcid, niaid, SBRI, UWPPG, glycosyltransferase, transferase, structural genomics; 2.25A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=94.21 E-value=0.12 Score=46.97 Aligned_cols=91 Identities=20% Similarity=0.301 Sum_probs=57.4
Q ss_pred HHHHHHHHhcC-CCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHH
Q 020423 183 GEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYAL 261 (326)
Q Consensus 183 ~eiv~avr~~~-~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i 261 (326)
.+.++++|+.. ..++.|- .+++++..+ .+ ++|+|.|-++..+ .+.+++.
T Consensus 197 ~~Av~~~r~~~p~~~ieVE-------vdtlde~~e----Al-~aGaD~I~LDn~~------------------~~~l~~a 246 (298)
T 3gnn_A 197 GEALDAAFALNAEVPVQIE-------VETLDQLRT----AL-AHGARSVLLDNFT------------------LDMMRDA 246 (298)
T ss_dssp HHHHHHHHHHC--CCCEEE-------ESSHHHHHH----HH-HTTCEEEEEESCC------------------HHHHHHH
T ss_pred HHHHHHHHHhCCCCCEEEE-------eCCHHHHHH----HH-HcCCCEEEECCCC------------------HHHHHHH
Confidence 35555666554 2333332 234555433 33 4799999887532 2333333
Q ss_pred Hhc-CCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhCCc
Q 020423 262 LRD-FPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW 304 (326)
Q Consensus 262 ~~~-~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~dP~ 304 (326)
++. ..++++.++||| +.+.+.++.++|+|.+.+|.....-|+
T Consensus 247 v~~i~~~v~ieaSGGI-~~~~i~~~a~tGVD~isvG~lt~sa~~ 289 (298)
T 3gnn_A 247 VRVTEGRAVLEVSGGV-NFDTVRAIAETGVDRISIGALTKDVRA 289 (298)
T ss_dssp HHHHTTSEEEEEESSC-STTTHHHHHHTTCSEEECGGGGTSCCC
T ss_pred HHHhCCCCeEEEEcCC-CHHHHHHHHHcCCCEEEECCeecCCCc
Confidence 332 347899999999 888999999999999999985443344
|
| >4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor} | Back alignment and structure |
|---|
Probab=94.10 E-value=0.057 Score=52.82 Aligned_cols=62 Identities=18% Similarity=0.204 Sum_probs=48.4
Q ss_pred hhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhh
Q 020423 222 SSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVG 296 (326)
Q Consensus 222 le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iG 296 (326)
+.++|+|.|+++.... . .....+.++++++.++++||++ |++.+.+.+.++.+.|||+|.+|
T Consensus 239 l~~aG~d~I~id~a~g----~--------~~~~~~~i~~ir~~~p~~~Vi~-g~v~t~e~a~~l~~aGaD~I~Vg 300 (496)
T 4fxs_A 239 LVEAGVDVLLIDSSHG----H--------SEGVLQRIRETRAAYPHLEIIG-GNVATAEGARALIEAGVSAVKVG 300 (496)
T ss_dssp HHHTTCSEEEEECSCT----T--------SHHHHHHHHHHHHHCTTCCEEE-EEECSHHHHHHHHHHTCSEEEEC
T ss_pred HHhccCceEEeccccc----c--------chHHHHHHHHHHHHCCCceEEE-cccCcHHHHHHHHHhCCCEEEEC
Confidence 3468999999986531 1 1123577888888877899887 77899999999999999999875
|
| >2vc6_A MOSA, dihydrodipicolinate synthase; DHDPS, TIM barrel, schiff base, lyase; HET: MCL; 1.95A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=94.05 E-value=1.4 Score=39.72 Aligned_cols=126 Identities=11% Similarity=0.020 Sum_probs=77.0
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC--CCcEEEEeccCCCCCccHH
Q 020423 135 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYN 212 (326)
Q Consensus 135 ~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~--~~pv~vK~r~g~~~~~~~~ 212 (326)
|.+.+.+.+++..+.|.|++-++.. +++ +.+ -..+.-.++++.+.+.+ ..||.+.+... +..
T Consensus 19 D~~~l~~lv~~li~~Gv~gl~~~Gt--------tGE-~~~--Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~-----~t~ 82 (292)
T 2vc6_A 19 DEVALHDLVEWQIEEGSFGLVPCGT--------TGE-SPT--LSKSEHEQVVEITIKTANGRVPVIAGAGSN-----STA 82 (292)
T ss_dssp CHHHHHHHHHHHHHTTCSEEETTSG--------GGT-GGG--SCHHHHHHHHHHHHHHHTTSSCBEEECCCS-----SHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEECcc--------ccC-hhh--CCHHHHHHHHHHHHHHhCCCCcEEEecCCc-----cHH
Confidence 6788999999999999999988642 233 222 22333344555554433 47888765432 344
Q ss_pred HHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEE------eCCCCCHHHHHHHH
Q 020423 213 QLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTL------NGGINTVDEVNAAL 286 (326)
Q Consensus 213 e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa------~GgI~s~~da~~~l 286 (326)
+.++ .++..++.|+|.+-+.... +...+ ...-++++.++.+.. ++||+. .|--.+++.+.++.
T Consensus 83 ~ai~-la~~A~~~Gadavlv~~P~--y~~~s-------~~~l~~~f~~ia~a~-~lPiilYn~P~~tg~~l~~~~~~~La 151 (292)
T 2vc6_A 83 EAIA-FVRHAQNAGADGVLIVSPY--YNKPT-------QEGIYQHFKAIDAAS-TIPIIVYNIPGRSAIEIHVETLARIF 151 (292)
T ss_dssp HHHH-HHHHHHHTTCSEEEEECCC--SSCCC-------HHHHHHHHHHHHHHC-SSCEEEEECHHHHSCCCCHHHHHHHH
T ss_pred HHHH-HHHHHHHcCCCEEEEcCCC--CCCCC-------HHHHHHHHHHHHHhC-CCCEEEEeCccccCcCCCHHHHHHHH
Confidence 5555 3556678999999886432 11100 011244556666654 899887 46556888887776
Q ss_pred H
Q 020423 287 R 287 (326)
Q Consensus 287 ~ 287 (326)
+
T Consensus 152 ~ 152 (292)
T 2vc6_A 152 E 152 (292)
T ss_dssp H
T ss_pred h
Confidence 5
|
| >1twd_A Copper homeostasis protein CUTC; TIM-like protein, structural genomics, PSI, protein structure initiative; 1.70A {Shigella flexneri} SCOP: c.1.30.1 PDB: 1x7i_A 1x8c_A | Back alignment and structure |
|---|
Probab=94.04 E-value=0.97 Score=40.04 Aligned_cols=127 Identities=9% Similarity=0.033 Sum_probs=76.9
Q ss_pred CCHHH---HHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCcc
Q 020423 134 SNLDN---LAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDS 210 (326)
Q Consensus 134 ~~~~~---f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~ 210 (326)
++.++ +.+-.+.++++|+|||-+-+-.+. +. -+.+.+.+++++.. +.++++--.+ +...+
T Consensus 67 Ys~~E~~~M~~Di~~~~~~GadGvV~G~Lt~d------g~------iD~~~~~~Li~~a~---~~~vTFHRAf--D~~~d 129 (256)
T 1twd_A 67 YSDGEFAAILEDVRTVRELGFPGLVTGVLDVD------GN------VDMPRMEKIMAAAG---PLAVTFHRAF--DMCAN 129 (256)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCSEEEECCBCTT------SS------BCHHHHHHHHHHHT---TSEEEECGGG--GGCSC
T ss_pred CCHHHHHHHHHHHHHHHHcCCCEEEEeeECCC------CC------cCHHHHHHHHHHhC---CCcEEEECch--hccCC
Confidence 45544 445667889999999999654332 11 35677788887653 4566554333 22233
Q ss_pred HHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCC
Q 020423 211 YNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGA 290 (326)
Q Consensus 211 ~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~Ga 290 (326)
..+.++ .+.+.|++.|--||.... -....+.++++.+...++-|++.||| +++.+.+++++|+
T Consensus 130 ~~~ale----~L~~lG~~rILTSG~~~~------------a~~g~~~L~~Lv~~a~~i~Im~GgGv-~~~Ni~~l~~tGv 192 (256)
T 1twd_A 130 PLYTLN----NLAELGIARVLTSGQKSD------------ALQGLSKIMELIAHRDAPIIMAGAGV-RAENLHHFLDAGV 192 (256)
T ss_dssp HHHHHH----HHHHHTCCEEEECTTSSS------------TTTTHHHHHHHHTSSSCCEEEEESSC-CTTTHHHHHHHTC
T ss_pred HHHHHH----HHHHcCCCEEECCCCCCC------------HHHHHHHHHHHHHhhCCcEEEecCCc-CHHHHHHHHHcCC
Confidence 333333 233569999987765321 01126677777765447888888999 4555666667776
Q ss_pred Chhh
Q 020423 291 HHVM 294 (326)
Q Consensus 291 D~V~ 294 (326)
+-+=
T Consensus 193 ~e~H 196 (256)
T 1twd_A 193 LEVH 196 (256)
T ss_dssp SEEE
T ss_pred CeEe
Confidence 6554
|
| >3qld_A Mandelate racemase/muconate lactonizing protein; structural genomics, PSI-2, isomerase; HET: MSE; 1.85A {Alicyclobacillus acidocaldarius LAA1} | Back alignment and structure |
|---|
Probab=93.96 E-value=1.2 Score=41.85 Aligned_cols=128 Identities=16% Similarity=0.220 Sum_probs=82.2
Q ss_pred EEEEecCC-CHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC-CCcEEEEeccC
Q 020423 127 IVLQIGGS-NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCRIG 204 (326)
Q Consensus 127 iivQL~g~-~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~-~~pv~vK~r~g 204 (326)
+-..+... +++++.+.++.+.+.||..+-+..+ | + .+ .+.+++||+.+ +..+.+-..-+
T Consensus 140 ~~~~~~~~~~~e~~~~~~~~~~~~G~~~~K~Kv~-~----------~----~d----~~~v~avR~~~~~~~l~vDaN~~ 200 (388)
T 3qld_A 140 VSATLGMSESLDVLIQSVDAAVEQGFRRVKLKIA-P----------G----RD----RAAIKAVRLRYPDLAIAADANGS 200 (388)
T ss_dssp BEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECB-T----------T----BS----HHHHHHHHHHCTTSEEEEECTTC
T ss_pred EeEEecCCCCHHHHHHHHHHHHHhCCCeEEEEeC-c----------H----HH----HHHHHHHHHHCCCCeEEEECCCC
Confidence 33444434 4899999999999999999999864 1 0 22 35567777766 34455544444
Q ss_pred CCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHH
Q 020423 205 VDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNA 284 (326)
Q Consensus 205 ~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~ 284 (326)
|+.. +... .+.+++.++.+|. . ..++.+++.++++.+.. .+||.+.=.+.+..++.+
T Consensus 201 ~~~~----~A~~--~~~l~~~~i~~iE----e------------P~~~~d~~~~~~l~~~~-~ipIa~dE~~~~~~~~~~ 257 (388)
T 3qld_A 201 YRPE----DAPV--LRQLDAYDLQFIE----Q------------PLPEDDWFDLAKLQASL-RTPVCLDESVRSVRELKL 257 (388)
T ss_dssp CCGG----GHHH--HHHGGGGCCSCEE----C------------CSCTTCHHHHHHHHHHC-SSCEEESTTCCSHHHHHH
T ss_pred CChH----HHHH--HHHHhhCCCcEEE----C------------CCCcccHHHHHHHHHhC-CCCEEeCCCCCCHHHHHH
Confidence 5432 2222 3456777877763 1 12333466677777664 788888778888888888
Q ss_pred HHHhC-CChhhhh
Q 020423 285 ALRKG-AHHVMVG 296 (326)
Q Consensus 285 ~l~~G-aD~V~iG 296 (326)
+++.| +|.|++=
T Consensus 258 ~~~~~a~d~v~~k 270 (388)
T 3qld_A 258 TARLGAARVLNVK 270 (388)
T ss_dssp HHHHTCCSEEEEC
T ss_pred HHHcCCCCEEEEC
Confidence 88855 7776653
|
| >1w0m_A TIM, triosephosphate isomerase; glycolysis, gluconeogenesis; 2.5A {Thermoproteus tenax} SCOP: c.1.1.1 | Back alignment and structure |
|---|
Probab=93.92 E-value=0.12 Score=45.28 Aligned_cols=141 Identities=16% Similarity=0.115 Sum_probs=80.6
Q ss_pred HHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHHHHh
Q 020423 143 TELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVS 222 (326)
Q Consensus 143 A~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia~~l 222 (326)
+..++++|+|+|-|..+.. | -.++ .+.+.++...+ .|....+- .+ + ..|. +.+
T Consensus 78 ~~~l~~~Ga~~VllghseR-----R-~~~~--------e~~~k~~~A~~-~GL~~ivc--Vg----e-~~e~-----~~~ 130 (226)
T 1w0m_A 78 LENIKEAGGSGVILNHSEA-----P-LKLN--------DLARLVAKAKS-LGLDVVVC--AP----D-PRTS-----LAA 130 (226)
T ss_dssp HHHHHHHTCCEEEECCTTS-----C-CBHH--------HHHHHHHHHHH-TTCEEEEE--ES----S-HHHH-----HHH
T ss_pred HHHHHHcCCCEEEEeeeec-----c-CCHH--------HHHHHHHHHHH-CCCEEEEE--eC----C-HHHH-----HHH
Confidence 4557889999999975422 2 1123 13444444322 35444442 22 1 1122 112
Q ss_pred hhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcC-CCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHh
Q 020423 223 SLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF-PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 301 (326)
Q Consensus 223 e~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~-~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~ 301 (326)
...+.+.|-+..++. -|..-+ -....+-..+...++++.. .+++|+..|||.+.+++..+.+.|+|++.||.+++.
T Consensus 131 ~~~~~~iIayep~wa--iGtG~~-v~t~~~d~~~~~~~~ir~~~~~~~ilyggsV~~~n~~~~~~~~giDG~LVG~a~l~ 207 (226)
T 1w0m_A 131 AALGPHAVAVEPPEL--IGTGRA-VSRYKPEAIVETVGLVSRHFPEVSVITGAGIESGDDVAAALRLGTRGVLLASAAVK 207 (226)
T ss_dssp HHTCCSEEEECCGGG--TTTSCC-HHHHCHHHHHHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHHTTCSEEEECHHHHT
T ss_pred hcCCCCEEEEcChhh--hccCCC-CCCCChhHHHHHHHHHHhccCCCEEEEeCCCCcHHHHHHHHhCCCCEEEECHHHHC
Confidence 345667777766543 221100 0000011122233333333 368999999999999999999999999999999999
Q ss_pred CCchhHHhHHHhh
Q 020423 302 NPWYTLGHVDTAI 314 (326)
Q Consensus 302 dP~l~~~~i~~~~ 314 (326)
-++ |...+++..
T Consensus 208 a~~-~~~~i~~l~ 219 (226)
T 1w0m_A 208 AKD-PYAKIVELA 219 (226)
T ss_dssp CSS-HHHHHHHHH
T ss_pred CcC-HHHHHHHHH
Confidence 888 666666543
|
| >1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1 | Back alignment and structure |
|---|
Probab=93.91 E-value=0.034 Score=54.21 Aligned_cols=63 Identities=21% Similarity=0.254 Sum_probs=49.0
Q ss_pred HhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhh
Q 020423 221 VSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVG 296 (326)
Q Consensus 221 ~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iG 296 (326)
.+.++|+|.|.+++.. |. ....++.+.++++..+++||+ .|++.+.+++..+++.|+|+|.+|
T Consensus 240 ~l~~~G~d~ivi~~a~----g~--------~~~~~~~i~~l~~~~p~~pvi-~G~v~t~~~a~~~~~~Gad~I~vg 302 (491)
T 1zfj_A 240 ALFEAGADAIVIDTAH----GH--------SAGVLRKIAEIRAHFPNRTLI-AGNIATAEGARALYDAGVDVVKVG 302 (491)
T ss_dssp HHHHHTCSEEEECCSC----TT--------CHHHHHHHHHHHHHCSSSCEE-EEEECSHHHHHHHHHTTCSEEEEC
T ss_pred HHHHcCCCeEEEeeec----Cc--------chhHHHHHHHHHHHCCCCcEe-CCCccCHHHHHHHHHcCCCEEEEC
Confidence 4456899999998621 21 112366777777776689999 999999999999999999999776
|
| >1qwg_A PSL synthase;, (2R)-phospho-3-sulfolactate synthase; beta-alpha-barrel, lyase; 1.60A {Methanocaldococcus jannaschii} SCOP: c.1.27.1 | Back alignment and structure |
|---|
Probab=93.83 E-value=0.96 Score=39.93 Aligned_cols=106 Identities=11% Similarity=0.105 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCC-----ccHH
Q 020423 138 NLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDH-----DSYN 212 (326)
Q Consensus 138 ~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~-----~~~~ 212 (326)
.|.+..+.+++.|||.|||+-|+-. -..+--.++++.+++. -+.|+.-.|..+. .++.
T Consensus 86 ~~~~yl~~~k~lGf~~iEiS~G~i~--------------l~~~~~~~~I~~~~~~---G~~v~~EvG~k~~~~~~~~~~~ 148 (251)
T 1qwg_A 86 KFDEFLNECEKLGFEAVEISDGSSD--------------ISLEERNNAIKRAKDN---GFMVLTEVGKKMPDKDKQLTID 148 (251)
T ss_dssp CHHHHHHHHHHHTCCEEEECCSSSC--------------CCHHHHHHHHHHHHHT---TCEEEEEECCSSHHHHTTCCHH
T ss_pred cHHHHHHHHHHcCCCEEEECCCccc--------------CCHHHHHHHHHHHHHC---CCEEeeeccccCCcccCCCCHH
Confidence 5667778889999999999765432 1133344455555432 3444555565443 3566
Q ss_pred HHHHHHHHHhhhCCccEEEEecCCcccC-CCCcCCcCCCCCccHHHHHHHHhcC
Q 020423 213 QLCDFIYKVSSLSPTRHFIIHSRKALLN-GISPAENRTIPPLKYEYYYALLRDF 265 (326)
Q Consensus 213 e~~~~ia~~le~~Gvd~I~v~~~~~~~~-g~~~~~~~~~~~~~~~~i~~i~~~~ 265 (326)
++++.+.+-++ +|+++|.+.+|+.... |.... ......+.+.++.+..
T Consensus 149 ~~I~~~~~~Le-AGA~~ViiEarEsG~~iGi~~~----~g~~r~d~v~~i~~~l 197 (251)
T 1qwg_A 149 DRIKLINFDLD-AGADYVIIEGRESGKGKGLFDK----EGKVKENELDVLAKNV 197 (251)
T ss_dssp HHHHHHHHHHH-HTCSEEEECCTTTCCSSTTBCT----TSCBCHHHHHHHHTTS
T ss_pred HHHHHHHHHHH-CCCcEEEEeeecccCCcccCCC----CCCCcHHHHHHHHHhC
Confidence 77776666664 8999999999875332 33221 1223456666666543
|
| >1zlp_A PSR132, petal death protein; TIM-barrel, helix swapping,2-ethyl-3-methylmalate lyase, 2-P methylmalate lyase, lyase/PEP mutase superfamily; 2.70A {Dianthus caryophyllus} | Back alignment and structure |
|---|
Probab=93.82 E-value=0.69 Score=42.42 Aligned_cols=163 Identities=15% Similarity=0.093 Sum_probs=86.3
Q ss_pred hcCCCCCcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCC-CCCCcccCCCCccccccCCHHHHHHHHHHHHhcC-CCc
Q 020423 119 AFSPEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCG-CPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVP 196 (326)
Q Consensus 119 ~~~~~~~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g-~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~-~~p 196 (326)
+.+..+.|+. =+...+ .-.|+.+.++|||.|=+-.. .-.......|. ..-..+.+.+.++.|.+.+ +.|
T Consensus 33 ~l~~~~~~i~-~~~ayD----~~sA~i~e~aGfdai~vs~~~~a~~~lG~pD~----~~vt~~em~~~~~~I~r~~~~~P 103 (318)
T 1zlp_A 33 RLIEEHGSVL-MPGVQD----ALSAAVVEKTGFHAAFVSGYSVSAAMLGLPDF----GLLTTTEVVEATRRITAAAPNLC 103 (318)
T ss_dssp HHHHHSSSEE-EEEECS----HHHHHHHHHTTCSEEEECHHHHHHHHHCCCSS----SCSCHHHHHHHHHHHHHHSSSSE
T ss_pred HHHhCCCcEE-EecCCC----HHHHHHHHHcCCCEEEECcHHHhhHhcCCCCC----CCCCHHHHHHHHHHHHhhccCCC
Confidence 3343444443 233345 34567888899999988531 10000001111 1134566777778888888 899
Q ss_pred EEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCc-ccCCCCcCCcCCCCCcc--HHHHHHHHhcCCCceEEEe
Q 020423 197 VSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKA-LLNGISPAENRTIPPLK--YEYYYALLRDFPDLTFTLN 273 (326)
Q Consensus 197 v~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~-~~~g~~~~~~~~~~~~~--~~~i~~i~~~~~~iPVIa~ 273 (326)
|++-+-.|+. +.++..+.+.+ ++++|++.|++.+... ...|+.+ ....-|.. .+.++.+++...+.++..+
T Consensus 104 viaD~d~Gyg---~~~~v~~tv~~-l~~aGaagv~iED~~~~k~cgH~~--gk~L~p~~e~~~rI~Aa~~A~~~~~~~I~ 177 (318)
T 1zlp_A 104 VVVDGDTGGG---GPLNVQRFIRE-LISAGAKGVFLEDQVWPKKCGHMR--GKAVVPAEEHALKIAAAREAIGDSDFFLV 177 (318)
T ss_dssp EEEECTTCSS---SHHHHHHHHHH-HHHTTCCEEEEECBCSSCCCSSSS--CCCBCCHHHHHHHHHHHHHHHTTSCCEEE
T ss_pred EEEeCCCCCC---CHHHHHHHHHH-HHHcCCcEEEECCCCCCccccCCC--CCccCCHHHHHHHHHHHHHhcccCCcEEE
Confidence 9999999854 33444554444 4569999999987642 1112211 01111211 2234443333212344555
Q ss_pred CCCCCH---------HHHHHHHHhCCChhhhh
Q 020423 274 GGINTV---------DEVNAALRKGAHHVMVG 296 (326)
Q Consensus 274 GgI~s~---------~da~~~l~~GaD~V~iG 296 (326)
|..... +++..+.+.|||+|.+=
T Consensus 178 ARtda~a~~gl~~ai~Ra~Ay~eAGAd~i~~e 209 (318)
T 1zlp_A 178 ARTDARAPHGLEEGIRRANLYKEAGADATFVE 209 (318)
T ss_dssp EEECTHHHHHHHHHHHHHHHHHHTTCSEEEEC
T ss_pred EeeHHhhhcCHHHHHHHHHHHHHcCCCEEEEc
Confidence 554432 12334445899999873
|
| >2ftp_A Hydroxymethylglutaryl-COA lyase; structural genomics, PSI, protein structure initiativ midwest center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=93.77 E-value=0.23 Score=45.24 Aligned_cols=141 Identities=10% Similarity=-0.005 Sum_probs=80.9
Q ss_pred HHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEec--cCCCC--CccHHHHHHH
Q 020423 142 ATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCR--IGVDD--HDSYNQLCDF 217 (326)
Q Consensus 142 aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r--~g~~~--~~~~~e~~~~ 217 (326)
-.+++.++|+|.|.+-.++....+. ..++-+.+...+.+.++++..++. +..+..-+. .+.++ ..+.+++.++
T Consensus 88 ~i~~a~~aG~~~v~i~~~~s~~~~~--~~~~~s~ee~l~~~~~~v~~a~~~-G~~V~~~l~~~~~~e~~~~~~~~~~~~~ 164 (302)
T 2ftp_A 88 GFEAALESGVKEVAVFAAASEAFSQ--RNINCSIKDSLERFVPVLEAARQH-QVRVRGYISCVLGCPYDGDVDPRQVAWV 164 (302)
T ss_dssp HHHHHHHTTCCEEEEEEESCHHHHH--HHHSSCHHHHHHHHHHHHHHHHHT-TCEEEEEEECTTCBTTTBCCCHHHHHHH
T ss_pred HHHHHHhCCcCEEEEEEecCHHHHH--HHhCCCHHHHHHHHHHHHHHHHHC-CCeEEEEEEEEeeCCcCCCCCHHHHHHH
Confidence 3455667899998884433211111 123444555667777777776653 555543333 23221 2345666664
Q ss_pred HHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeC--CCCCH-HHHHHHHHhCCChhh
Q 020423 218 IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNG--GINTV-DEVNAALRKGAHHVM 294 (326)
Q Consensus 218 ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~G--gI~s~-~da~~~l~~GaD~V~ 294 (326)
.+.+.+.|+|.|.+.... |.. .|....+.++++++..+++|+..=| +...+ ..+.++++.|++-|-
T Consensus 165 -~~~~~~~G~d~i~l~DT~----G~~------~P~~~~~lv~~l~~~~~~~~l~~H~Hn~~Gla~An~laAv~aGa~~vd 233 (302)
T 2ftp_A 165 -ARELQQMGCYEVSLGDTI----GVG------TAGATRRLIEAVASEVPRERLAGHFHDTYGQALANIYASLLEGIAVFD 233 (302)
T ss_dssp -HHHHHHTTCSEEEEEESS----SCC------CHHHHHHHHHHHTTTSCGGGEEEEEBCTTSCHHHHHHHHHHTTCCEEE
T ss_pred -HHHHHHcCCCEEEEeCCC----CCc------CHHHHHHHHHHHHHhCCCCeEEEEeCCCccHHHHHHHHHHHhCCCEEE
Confidence 344567999999987432 211 1223356777776665578887766 43333 457778888987765
Q ss_pred hh
Q 020423 295 VG 296 (326)
Q Consensus 295 iG 296 (326)
..
T Consensus 234 ~t 235 (302)
T 2ftp_A 234 SS 235 (302)
T ss_dssp EB
T ss_pred ec
Confidence 44
|
| >3p0w_A Mandelate racemase/muconate lactonizing protein; structural genomics, PSI-2, protein structure initiative; HET: GKR; 1.71A {Ralstonia pickettii} PDB: 4hn8_A 3nxl_A | Back alignment and structure |
|---|
Probab=93.69 E-value=0.51 Score=45.71 Aligned_cols=123 Identities=15% Similarity=0.082 Sum_probs=77.2
Q ss_pred CCHHHHHHHHHHHHH-CCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC-CCcEEEEeccCCCCCccH
Q 020423 134 SNLDNLAKATELANA-YNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSY 211 (326)
Q Consensus 134 ~~~~~f~~aA~~a~~-aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~-~~pv~vK~r~g~~~~~~~ 211 (326)
.+++++++.|+.+.+ .||..+-+..|.+ +++.-.+.+++||++. +..+.+-...+| +.
T Consensus 199 ~~~e~~~~~a~~~~~~~Gf~~~KlKvG~~----------------~~~~Di~rv~avRea~pd~~L~vDaN~~w----~~ 258 (470)
T 3p0w_A 199 MTPAAIARLAEAATERYGFADFKLKGGVM----------------PGAEEMEAIAAIKARFPHARVTLDPNGAW----SL 258 (470)
T ss_dssp CSHHHHHHHHHHHHHHHCCSEEEEECSSS----------------CHHHHHHHHHHHHHHCTTSEEEEECTTBB----CH
T ss_pred CCHHHHHHHHHHHHHhCCCCEEEEeCCCC----------------CHHHHHHHHHHHHHhCCCCeEEeeCCCCC----CH
Confidence 578999999988776 6999999986532 1233356778888875 333434332333 45
Q ss_pred HHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCcc----HHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHH
Q 020423 212 NQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLK----YEYYYALLRDFPDLTFTLNGGINTVDEVNAALR 287 (326)
Q Consensus 212 ~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~----~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~ 287 (326)
++..+ +.+.+++. +.+|. . ..++.+ ++.++++.+.. .+||.+.=-+.+..++.++++
T Consensus 259 ~~Ai~-~~~~Le~~-l~~iE----e------------P~~~~d~~~~~~~~~~l~~~~-~iPIa~dE~~~~~~~~~~~l~ 319 (470)
T 3p0w_A 259 NEAIA-LCKGQGHL-VAYAE----D------------PCGPEAGYSGREVMAEFKRAT-GIPTATNMIATDWRQMGHAVQ 319 (470)
T ss_dssp HHHHH-HHTTCTTT-CSEEE----S------------CBCCBTTBCHHHHHHHHHHHH-CCCEEESSSSCSHHHHHHHHH
T ss_pred HHHHH-HHHhcccc-ceeec----C------------CCChhhccchHHHHHHHHhcC-CCCEEeCCccCCHHHHHHHHH
Confidence 55555 34455655 66653 1 112222 45666776664 789877556778888888888
Q ss_pred hC-CChhhh
Q 020423 288 KG-AHHVMV 295 (326)
Q Consensus 288 ~G-aD~V~i 295 (326)
.| +|.+++
T Consensus 320 ~~a~div~~ 328 (470)
T 3p0w_A 320 LHAVDIPLA 328 (470)
T ss_dssp TTCCSEEBC
T ss_pred cCCCCEEEe
Confidence 65 777754
|
| >1vli_A Spore coat polysaccharide biosynthesis protein SP; 2636322, JCSG, protein structure initiative, BS SPSE, PSI; 2.38A {Bacillus subtilis} SCOP: b.85.1.1 c.1.10.6 | Back alignment and structure |
|---|
Probab=93.66 E-value=1.1 Score=42.16 Aligned_cols=202 Identities=11% Similarity=0.048 Sum_probs=106.9
Q ss_pred ccccCeec---CCcEEEccCC--CCChHHHH----HHHHHcCCCcEEEecceeeccccccccchhhhhhcCCCCCcEEEE
Q 020423 60 EMVARQYL---PPWFSVAPMM--DWTDNHYR----TLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 130 (326)
Q Consensus 60 ~~ig~~~l---~nrivlAPM~--~~s~~~~r----~~~~~~Gg~gli~te~~~~~~~~~~~~~~~~~~~~~~~~~piivQ 130 (326)
++||+..+ .+.+|.|=+. ...+.+.. ..+.++| ++.+=.+...++.+...+. ..+. . .+ +-.-|
T Consensus 16 ~~~~~~~ig~~~~~~IIAEiG~NH~Gsle~A~~li~~Ak~aG-AdavKfQ~~k~~tl~s~~~--~~fq-~--~~-~~~~~ 88 (385)
T 1vli_A 16 FQIANKTVGKDAPVFIIAEAGINHDGKLDQAFALIDAAAEAG-ADAVKFQMFQADRMYQKDP--GLYK-T--AA-GKDVS 88 (385)
T ss_dssp EEETTEEEETTSCCEEEEEEETTTTTCHHHHHHHHHHHHHHT-CSEEEECCBCGGGGTSCCC---------------CCC
T ss_pred eeECCEEeCCCCCcEEEEeecCcccccHHHHHHHHHHHHHhC-CCEEeeeeeccCcccCcch--hhhc-c--CC-CCCcc
Confidence 67777766 3578888663 23333322 2345555 7777666655554321111 0010 0 00 00001
Q ss_pred e------cCCCHHHHHHHHHHHHHCCCCEEEec-----------CCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC
Q 020423 131 I------GGSNLDNLAKATELANAYNYDEINLN-----------CGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT 193 (326)
Q Consensus 131 L------~g~~~~~f~~aA~~a~~aG~d~Iein-----------~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~ 193 (326)
+ .+-..+++....+.+++.|.+.+--- .+.|.-+ -|+.-+++..++.++ ...
T Consensus 89 ~ye~~~~~~l~~e~~~~L~~~~~~~Gi~~~stpfD~~svd~l~~~~vd~~K------IgS~~~~N~pLL~~v-----a~~ 157 (385)
T 1vli_A 89 IFSLVQSMEMPAEWILPLLDYCREKQVIFLSTVCDEGSADLLQSTSPSAFK------IASYEINHLPLLKYV-----ARL 157 (385)
T ss_dssp HHHHGGGBSSCGGGHHHHHHHHHHTTCEEECBCCSHHHHHHHHTTCCSCEE------ECGGGTTCHHHHHHH-----HTT
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHcCCcEEEccCCHHHHHHHHhcCCCEEE------ECcccccCHHHHHHH-----Hhc
Confidence 1 12245666666666777665544221 1122211 245555676665554 336
Q ss_pred CCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCc-cEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEE
Q 020423 194 NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPT-RHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTL 272 (326)
Q Consensus 194 ~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gv-d~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa 272 (326)
+.||.+|.-. .+++|+... ++.+.+.|. +.+-+|+-..+ . .+ ....++..+..+++.++++||..
T Consensus 158 gKPViLStGm-----aTl~Ei~~A-ve~i~~~Gn~~iiLlhc~s~Y-P--tp-----~~~~nL~aI~~Lk~~f~~lpVG~ 223 (385)
T 1vli_A 158 NRPMIFSTAG-----AEISDVHEA-WRTIRAEGNNQIAIMHCVAKY-P--AP-----PEYSNLSVIPMLAAAFPEAVIGF 223 (385)
T ss_dssp CSCEEEECTT-----CCHHHHHHH-HHHHHTTTCCCEEEEEECSSS-S--CC-----GGGCCTTHHHHHHHHSTTSEEEE
T ss_pred CCeEEEECCC-----CCHHHHHHH-HHHHHHCCCCcEEEEeccCCC-C--CC-----hhhcCHHHHHHHHHHcCCCCEEe
Confidence 8999998544 245565553 345556787 77777854321 1 11 12244566767766655799977
Q ss_pred eCCCCC-HHHHHHHHHhCCChh
Q 020423 273 NGGINT-VDEVNAALRKGAHHV 293 (326)
Q Consensus 273 ~GgI~s-~~da~~~l~~GaD~V 293 (326)
++=-.. ..-...++..||+.|
T Consensus 224 SdHt~G~~~~~~AAvAlGA~iI 245 (385)
T 1vli_A 224 SDHSEHPTEAPCAAVRLGAKLI 245 (385)
T ss_dssp EECCSSSSHHHHHHHHTTCSEE
T ss_pred CCCCCCchHHHHHHHHcCCCEE
Confidence 754444 667777888999954
|
| >3mzn_A Glucarate dehydratase; lyase, structural genomics, protein structure initiative, PS nysgrc; 1.85A {Chromohalobacter salexigens} PDB: 3nfu_A | Back alignment and structure |
|---|
Probab=93.57 E-value=0.62 Score=44.86 Aligned_cols=123 Identities=7% Similarity=0.023 Sum_probs=76.8
Q ss_pred CCHHHHHHHHHHHHH-CCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC-CCcEEEEeccCCCCCccH
Q 020423 134 SNLDNLAKATELANA-YNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSY 211 (326)
Q Consensus 134 ~~~~~f~~aA~~a~~-aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~-~~pv~vK~r~g~~~~~~~ 211 (326)
.+++++++.|+.+.+ .||..+-+..|.+ +++.-.+.+++||++. +..+.+-...+| +.
T Consensus 181 ~~~e~~~~~a~~~~~~~Gf~~~KlKvG~~----------------~~~~Di~~v~avRea~pd~~L~vDaN~~w----~~ 240 (450)
T 3mzn_A 181 MTPEAVANLARAAYDRYGFKDFKLKGGVL----------------RGEEEADCIRALHEAFPEARLALDPNGAW----KL 240 (450)
T ss_dssp CSHHHHHHHHHHHHHHHCCSEEEEECSSS----------------CHHHHHHHHHHHHHHCTTSEEEEECTTCB----CH
T ss_pred CCHHHHHHHHHHHHHhCCCCEEEECCCCC----------------CHHHHHHHHHHHHHhCCCCeEEEECCCCC----CH
Confidence 478999999988776 6999999976532 1233356778888875 333444333333 45
Q ss_pred HHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCcc----HHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHH
Q 020423 212 NQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLK----YEYYYALLRDFPDLTFTLNGGINTVDEVNAALR 287 (326)
Q Consensus 212 ~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~----~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~ 287 (326)
++..+ +.+.+++. +.+|. .+ .++.+ ++.++++.+.. .+||.+.=-+.+..++.++++
T Consensus 241 ~~A~~-~~~~L~~~-i~~iE----eP------------~~~~d~~~~~~~~~~l~~~~-~iPIa~dE~~~~~~~~~~~i~ 301 (450)
T 3mzn_A 241 DEAVR-VLEPIKHL-LSYAE----DP------------CGQEGGFSGRETMAEFKKRT-GLPTATNMIATDYKQLQYAVQ 301 (450)
T ss_dssp HHHHH-HHGGGGGG-CSEEE----SS------------BCCBTTBCHHHHHHHHHHHH-CCCEEESSSSSSHHHHHHHHH
T ss_pred HHHHH-HHHHhhhc-cceee----CC------------CCcccccchHHHHHHHHHhc-CCCEEeCCccCCHHHHHHHHH
Confidence 55555 34566666 66653 11 12222 45666666654 788777556778888888888
Q ss_pred hC-CChhhh
Q 020423 288 KG-AHHVMV 295 (326)
Q Consensus 288 ~G-aD~V~i 295 (326)
.| +|.+++
T Consensus 302 ~~a~di~~~ 310 (450)
T 3mzn_A 302 LNSVDIPLA 310 (450)
T ss_dssp HTCCSEEBC
T ss_pred cCCCCEEEe
Confidence 65 777654
|
| >3vc5_A Mandelate racemase/muconate lactonizing protein; dehydratase, magnesium binding, enzyme function initiative, enolase, isomerase; 1.50A {Thermobispora bispora} PDB: 3vc6_A 4dhg_A | Back alignment and structure |
|---|
Probab=93.56 E-value=0.77 Score=44.07 Aligned_cols=121 Identities=12% Similarity=0.147 Sum_probs=78.1
Q ss_pred CCHHHHHHHHHHHHH-CCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC-CCcEEEEeccCCCCCccH
Q 020423 134 SNLDNLAKATELANA-YNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSY 211 (326)
Q Consensus 134 ~~~~~f~~aA~~a~~-aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~-~~pv~vK~r~g~~~~~~~ 211 (326)
.+++++++.|+.+.+ .||..+-+..|.. +++.-.+.+++||+++ +..+.+-..-+| +.
T Consensus 187 ~~~e~~~~~a~~~~~~~Gf~~~KlKvG~~----------------~~~~Di~rv~avRea~pd~~L~vDaN~~w----~~ 246 (441)
T 3vc5_A 187 LDPDGIVAQARLLIGEYGFRSIKLKGGVF----------------PPEQEAEAIQALRDAFPGLPLRLDPNAAW----TV 246 (441)
T ss_dssp CSHHHHHHHHHHHHHHHCCSSEEEECSSS----------------CHHHHHHHHHHHHHHSTTCCEEEECTTCS----CH
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEccCCC----------------CHHHHHHHHHHHHHhCCCCcEeccCCCCC----CH
Confidence 578999999988765 5999999975421 2344456788888877 445555544444 34
Q ss_pred HHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhC-C
Q 020423 212 NQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKG-A 290 (326)
Q Consensus 212 ~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~G-a 290 (326)
++.++ +.+.+++. +.+|. . + . .+++.++++.+.. .+||.+.=.+.+..++.++++.| +
T Consensus 247 ~~Ai~-~~~~L~~~-l~~iE----e-----------P-~--~~~~~~~~l~~~~-~iPIa~dE~~~~~~~~~~~l~~~a~ 305 (441)
T 3vc5_A 247 ETSIR-VGRALDGV-LEYLE----D-----------P-T--PGIDGMARVAAEV-PMPLATNMCVVTPEHLPAAVERRPI 305 (441)
T ss_dssp HHHHH-HHHHTTTT-CSEEE----C-----------C-S--SSHHHHHHHHTTS-SSCEEESSSCCSGGGHHHHHHHCCC
T ss_pred HHHHH-HHHHHHHH-HHHhh----c-----------c-C--CCHHHHHHHHhcC-CCCEEeCCCCCCHHHHHHHHHhCCC
Confidence 45555 34556666 77763 1 0 1 1356666666553 78887766677888888877754 7
Q ss_pred Chhhh
Q 020423 291 HHVMV 295 (326)
Q Consensus 291 D~V~i 295 (326)
|.+++
T Consensus 306 dii~~ 310 (441)
T 3vc5_A 306 GVLLI 310 (441)
T ss_dssp SEEEE
T ss_pred CEEee
Confidence 77665
|
| >1s2w_A Phosphoenolpyruvate phosphomutase; phosphonopyruvate, phosphonate biosynthesis pathway, isomera; 1.69A {Mytilus edulis} SCOP: c.1.12.7 PDB: 1m1b_A 1s2t_A 1s2v_A 1pym_A 1s2u_A | Back alignment and structure |
|---|
Probab=93.54 E-value=0.47 Score=43.08 Aligned_cols=106 Identities=8% Similarity=0.088 Sum_probs=61.0
Q ss_pred hhhcCCCCCcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCC-CCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCC
Q 020423 117 FLAFSPEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCG-CPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNV 195 (326)
Q Consensus 117 ~~~~~~~~~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g-~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~ 195 (326)
+.+.+..+.|+. =+...+ .-.|+.+.++|||.|=+... .-.. ....|. | .-..+-+.+.++.|.+.++.
T Consensus 11 lr~l~~~~~~i~-~~~a~D----~~sA~~~~~aG~~ai~vsg~~~a~~-lG~pD~-~---~vt~~em~~~~~~I~~~~~~ 80 (295)
T 1s2w_A 11 LKQMLNSKDLEF-IMEAHN----GLSARIVQEAGFKGIWGSGLSVSAQ-LGVRDS-N---EASWTQVVEVLEFMSDASDV 80 (295)
T ss_dssp HHHHHHSSSCEE-EEEECS----HHHHHHHHHHTCSCEEECCHHHHHT-C-------------CHHHHHHHHHHHHTCSS
T ss_pred HHHHHhCCCcEE-EecCCC----HHHHHHHHHcCCCEEEeChHHHHHh-CCCCCC-C---CCCHHHHHHHHHHHHhcCCC
Confidence 333444455543 233345 34567778889999988521 1110 011111 1 12344566677777788899
Q ss_pred cEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCC
Q 020423 196 PVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRK 236 (326)
Q Consensus 196 pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~ 236 (326)
||++-+-.|+.+ .++..+.+.+ ++++|++.|++.+..
T Consensus 81 PviaD~d~Gyg~---~~~v~~~v~~-l~~aGaagv~iED~~ 117 (295)
T 1s2w_A 81 PILLDADTGYGN---FNNARRLVRK-LEDRGVAGACLEDKL 117 (295)
T ss_dssp CEEEECCSSCSS---HHHHHHHHHH-HHHTTCCEEEEECBC
T ss_pred CEEecCCCCCCC---HHHHHHHHHH-HHHcCCcEEEECCCC
Confidence 999999888543 3344454444 457999999998764
|
| >1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A* | Back alignment and structure |
|---|
Probab=93.52 E-value=4.1 Score=36.76 Aligned_cols=137 Identities=15% Similarity=0.134 Sum_probs=82.8
Q ss_pred CCCcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEec
Q 020423 123 EQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCR 202 (326)
Q Consensus 123 ~~~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r 202 (326)
...|+++...+.+.++-.+.++.++++|+|++-+- .|..+ . ...+-+.+-.++|.++++.|+.+=--
T Consensus 80 grvpViaGvg~~~t~~ai~la~~A~~~Gadavlv~--~P~y~-~----------~s~~~l~~~f~~va~a~~lPiilYn~ 146 (301)
T 1xky_A 80 KRVPVIAGTGSNNTHASIDLTKKATEVGVDAVMLV--APYYN-K----------PSQEGMYQHFKAIAESTPLPVMLYNV 146 (301)
T ss_dssp TSSCEEEECCCSCHHHHHHHHHHHHHTTCSEEEEE--CCCSS-C----------CCHHHHHHHHHHHHHTCSSCEEEEEC
T ss_pred CCceEEeCCCCCCHHHHHHHHHHHHhcCCCEEEEc--CCCCC-C----------CCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 45789999998899999999999999999999885 24321 1 13566777888888888999887532
Q ss_pred ---cCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCC-CceEEEeCCCCC
Q 020423 203 ---IGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFP-DLTFTLNGGINT 278 (326)
Q Consensus 203 ---~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~-~iPVIa~GgI~s 278 (326)
.|.+- +.+.+ .++.+.-.+..|--+.+ +...+.++++... ++. +.+|.
T Consensus 147 P~~tg~~l--~~~~~----~~La~~pnIvgiKdssg------------------d~~~~~~~~~~~~~~f~-v~~G~--- 198 (301)
T 1xky_A 147 PGRSIVQI--SVDTV----VRLSEIENIVAIKDAGG------------------DVLTMTEIIEKTADDFA-VYSGD--- 198 (301)
T ss_dssp HHHHSSCC--CHHHH----HHHHTSTTEEEEEECSS------------------CHHHHHHHHHHSCTTCE-EEESS---
T ss_pred ccccCCCC--CHHHH----HHHHcCCCEEEEEcCCC------------------CHHHHHHHHHhcCCCeE-EEECc---
Confidence 23221 22222 23332223434432221 2444445554432 343 35553
Q ss_pred HHHHHHHHHhCCChhhhhHHHH
Q 020423 279 VDEVNAALRKGAHHVMVGRAAY 300 (326)
Q Consensus 279 ~~da~~~l~~GaD~V~iGRall 300 (326)
-+.+...+..|++++..+.+-+
T Consensus 199 d~~~l~~l~~G~~G~is~~an~ 220 (301)
T 1xky_A 199 DGLTLPAMAVGAKGIVSVASHV 220 (301)
T ss_dssp GGGHHHHHHTTCCEEEESTHHH
T ss_pred HHHHHHHHHcCCCEEEcCHHHh
Confidence 1235566778888877765543
|
| >1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A* | Back alignment and structure |
|---|
Probab=93.43 E-value=0.083 Score=51.82 Aligned_cols=63 Identities=14% Similarity=0.262 Sum_probs=47.8
Q ss_pred HhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhh
Q 020423 221 VSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVG 296 (326)
Q Consensus 221 ~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iG 296 (326)
.+.++|+|.|++|... |. +...++.+.++++.++++||++ |++.+.+++..+.+.|||+|.+|
T Consensus 262 ~~~~aG~d~v~i~~~~----G~--------~~~~~~~i~~i~~~~~~~pvi~-~~v~t~~~a~~l~~aGad~I~vg 324 (514)
T 1jcn_A 262 LLTQAGVDVIVLDSSQ----GN--------SVYQIAMVHYIKQKYPHLQVIG-GNVVTAAQAKNLIDAGVDGLRVG 324 (514)
T ss_dssp HHHHTTCSEEEECCSC----CC--------SHHHHHHHHHHHHHCTTCEEEE-EEECSHHHHHHHHHHTCSEEEEC
T ss_pred HHHHcCCCEEEeeccC----Cc--------chhHHHHHHHHHHhCCCCceEe-cccchHHHHHHHHHcCCCEEEEC
Confidence 3456999999998642 11 1123577888877766899876 67899999999999999999774
|
| >2yci_X 5-methyltetrahydrofolate corrinoid/iron sulfur PR methyltransferase; 1.78A {Carboxydothermus hydrogenoformans} PDB: 2ycj_A* 2yck_X* | Back alignment and structure |
|---|
Probab=93.42 E-value=1.3 Score=39.72 Aligned_cols=53 Identities=8% Similarity=0.076 Sum_probs=42.0
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEE
Q 020423 135 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVK 200 (326)
Q Consensus 135 ~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK 200 (326)
+.+...+.|+...+.|+|.|+|++.++. .+..+.+..+++++++.++.|+++-
T Consensus 32 ~~~~a~~~a~~~v~~GAdiIDIg~~s~~-------------~eE~~rv~~vi~~l~~~~~~pisID 84 (271)
T 2yci_X 32 DPRPIQEWARRQAEKGAHYLDVNTGPTA-------------DDPVRVMEWLVKTIQEVVDLPCCLD 84 (271)
T ss_dssp CCHHHHHHHHHHHHTTCSEEEEECCSCS-------------SCHHHHHHHHHHHHHHHCCCCEEEE
T ss_pred CHHHHHHHHHHHHHCCCCEEEEcCCcCc-------------hhHHHHHHHHHHHHHHhCCCeEEEe
Confidence 3466667777788899999999987632 1348889999999998889999884
|
| >3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=93.41 E-value=3.9 Score=37.23 Aligned_cols=67 Identities=12% Similarity=0.138 Sum_probs=52.6
Q ss_pred CCCCcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEe
Q 020423 122 PEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKC 201 (326)
Q Consensus 122 ~~~~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~ 201 (326)
....|+++...+.+.++-.+.++.++++|+|++-+- .|..+ . ...+-+.+-.++|.++++.|+.+=-
T Consensus 91 ~grvpViaGvg~~~t~~ai~la~~A~~~Gadavlv~--~P~y~-~----------~s~~~l~~~f~~va~a~~lPiilYn 157 (315)
T 3na8_A 91 AHRVPTIVSVSDLTTAKTVRRAQFAESLGAEAVMVL--PISYW-K----------LNEAEVFQHYRAVGEAIGVPVMLYN 157 (315)
T ss_dssp TTSSCBEEECCCSSHHHHHHHHHHHHHTTCSEEEEC--CCCSS-C----------CCHHHHHHHHHHHHHHCSSCEEEEE
T ss_pred CCCCcEEEecCCCCHHHHHHHHHHHHhcCCCEEEEC--CCCCC-C----------CCHHHHHHHHHHHHHhCCCcEEEEe
Confidence 345789999988999999999999999999999984 34421 1 1356677888888888899998753
|
| >3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8} | Back alignment and structure |
|---|
Probab=93.37 E-value=0.45 Score=43.75 Aligned_cols=90 Identities=16% Similarity=0.139 Sum_probs=62.9
Q ss_pred CHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHH
Q 020423 178 DPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEY 257 (326)
Q Consensus 178 r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~ 257 (326)
.++.+.+.++.+++.++.|+.|.+-.. + .+.++..+ .+.+.|+|.|+++.+.. .+.
T Consensus 61 ~~~~l~~~i~~i~~~~~~p~gVnl~~~-~--~~~~~~~~----~~~~~g~d~V~l~~g~p-----------------~~~ 116 (326)
T 3bo9_A 61 KPDDLRKAISELRQKTDKPFGVNIILV-S--PWADDLVK----VCIEEKVPVVTFGAGNP-----------------TKY 116 (326)
T ss_dssp CHHHHHHHHHHHHTTCSSCEEEEEETT-S--TTHHHHHH----HHHHTTCSEEEEESSCC-----------------HHH
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEEecc-C--CCHHHHHH----HHHHCCCCEEEECCCCc-----------------HHH
Confidence 478888999999988888888876542 1 12333332 34468999999876421 233
Q ss_pred HHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhh
Q 020423 258 YYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMV 295 (326)
Q Consensus 258 i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~i 295 (326)
+..+. +. +++|+. .+.+.+++..+.+.|+|+|.+
T Consensus 117 ~~~l~-~~-g~~v~~--~v~s~~~a~~a~~~GaD~i~v 150 (326)
T 3bo9_A 117 IRELK-EN-GTKVIP--VVASDSLARMVERAGADAVIA 150 (326)
T ss_dssp HHHHH-HT-TCEEEE--EESSHHHHHHHHHTTCSCEEE
T ss_pred HHHHH-Hc-CCcEEE--EcCCHHHHHHHHHcCCCEEEE
Confidence 44443 33 778875 678999999999999999988
|
| >2hjp_A Phosphonopyruvate hydrolase; phosporus-Ca cleavage, PEP mutase/isocitrate lyase superfamily; HET: XYS PPR; 1.90A {Variovorax SP} PDB: 2dua_A* 2hrw_A | Back alignment and structure |
|---|
Probab=93.35 E-value=0.72 Score=41.77 Aligned_cols=102 Identities=12% Similarity=0.094 Sum_probs=62.7
Q ss_pred CCCCCcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCC-CCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEE
Q 020423 121 SPEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCG-CPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSV 199 (326)
Q Consensus 121 ~~~~~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g-~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~v 199 (326)
+..+.|+. =+...+ .-.|+.+.++|||.|=+... .-.. ....|. ..-..+.+.+.++.|.+.++.||++
T Consensus 11 ~~~~~~i~-~~~a~D----~~sA~~~~~aG~~ai~vs~~~~a~~-~G~pD~----~~vt~~em~~~~~~I~~~~~~Pvia 80 (290)
T 2hjp_A 11 LDSGRLFT-AMAAHN----PLVAKLAEQAGFGGIWGSGFELSAS-YAVPDA----NILSMSTHLEMMRAIASTVSIPLIA 80 (290)
T ss_dssp HHHCCCEE-EEECSS----HHHHHHHHHHTCSEEEECHHHHHHH-TTSCTT----TCSCHHHHHHHHHHHHTTCSSCEEE
T ss_pred HhCCCcEE-EecCCC----HHHHHHHHHcCCCEEEEChHHHHHh-CCCCCC----CCCCHHHHHHHHHHHHhcCCCCEEE
Confidence 33344443 344455 34577788899999988521 0000 001111 1234667777888888888999999
Q ss_pred EeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCC
Q 020423 200 KCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRK 236 (326)
Q Consensus 200 K~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~ 236 (326)
-+-.|+. +.++..+.+.+ ++++|++.|++.+..
T Consensus 81 D~d~Gyg---~~~~~~~~v~~-l~~aGa~gv~iED~~ 113 (290)
T 2hjp_A 81 DIDTGFG---NAVNVHYVVPQ-YEAAGASAIVMEDKT 113 (290)
T ss_dssp ECTTTTS---SHHHHHHHHHH-HHHHTCSEEEEECBC
T ss_pred ECCCCCC---CHHHHHHHHHH-HHHhCCeEEEEcCCC
Confidence 9988854 33444554444 456999999998764
|
| >1m3u_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; beta-alpha-barrel, TIM-barrel, ketopantoate, selenomethionin decamer; HET: KPL; 1.80A {Escherichia coli} SCOP: c.1.12.8 | Back alignment and structure |
|---|
Probab=93.34 E-value=0.33 Score=43.37 Aligned_cols=156 Identities=8% Similarity=0.032 Sum_probs=86.2
Q ss_pred CCCChHHHHHHHHHcCCCcEEEecceeec-ccccccc---chhhhhh----c-CCCC-CcEEEEec-C-C-CHHHHHHHH
Q 020423 77 MDWTDNHYRTLARLISKHAWLYTEMLAAE-TIIYQQG---NLDRFLA----F-SPEQ-HPIVLQIG-G-S-NLDNLAKAT 143 (326)
Q Consensus 77 ~~~s~~~~r~~~~~~Gg~gli~te~~~~~-~~~~~~~---~~~~~~~----~-~~~~-~piivQL~-g-~-~~~~f~~aA 143 (326)
.+.-|...+.++.+.| +..+.++..... -+.+.+. ..+.++. + ...+ .++++-+- | . ++++..+.|
T Consensus 22 ~tayD~~sA~l~e~aG-~d~ilvGdsl~~~~lG~~dt~~vtldemi~h~~aV~r~~~~~~vvaD~pfgsy~~~~~a~~~a 100 (264)
T 1m3u_A 22 ITAYDYSFAKLFADEG-LNVMLVGDSLGMTVQGHDSTLPVTVADIAYHTAAVRRGAPNCLLLADLPFMAYATPEQAFENA 100 (264)
T ss_dssp EECCSHHHHHHHHHHT-CCEEEECTTHHHHTTCCSSSTTCCHHHHHHHHHHHHHHCTTSEEEEECCTTSSSSHHHHHHHH
T ss_pred EeCcCHHHHHHHHHcC-CCEEEECHHHHHHHcCCCCCCCcCHHHHHHHHHHHHhhCCCCcEEEECCCCCcCCHHHHHHHH
Confidence 3555777777777766 888888642211 1111111 1122221 1 1233 34555542 1 1 788888888
Q ss_pred HHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEecc---------CC----CCCcc
Q 020423 144 ELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRI---------GV----DDHDS 210 (326)
Q Consensus 144 ~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~---------g~----~~~~~ 210 (326)
.++.++|+++|.|--+ +...+.++++.+ .++||.--+.+ ++ .+...
T Consensus 101 ~rl~kaGa~aVklEgg--------------------~e~~~~I~al~~-agipV~gHiGLtPq~v~~~ggf~v~grt~~~ 159 (264)
T 1m3u_A 101 ATVMRAGANMVKIEGG--------------------EWLVETVQMLTE-RAVPVCGHLGLTPQSVNIFGGYKVQGRGDEA 159 (264)
T ss_dssp HHHHHTTCSEEECCCS--------------------GGGHHHHHHHHH-TTCCEEEEEESCGGGHHHHTSSCCCCCSHHH
T ss_pred HHHHHcCCCEEEECCc--------------------HHHHHHHHHHHH-CCCCeEeeecCCceeecccCCeEEEeCCHHH
Confidence 8888899999998432 012334444433 37887632221 11 11112
Q ss_pred HHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeC
Q 020423 211 YNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNG 274 (326)
Q Consensus 211 ~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~G 274 (326)
.+++++. ++.++++|+|.|.+.+-. .+..+++.++. ++|+|+-|
T Consensus 160 a~~~i~r-A~a~~eAGA~~ivlE~vp------------------~~~a~~it~~l-~iP~igIG 203 (264)
T 1m3u_A 160 GDQLLSD-ALALEAAGAQLLVLECVP------------------VELAKRITEAL-AIPVIGIG 203 (264)
T ss_dssp HHHHHHH-HHHHHHHTCCEEEEESCC------------------HHHHHHHHHHC-SSCEEEES
T ss_pred HHHHHHH-HHHHHHCCCcEEEEecCC------------------HHHHHHHHHhC-CCCEEEeC
Confidence 3455553 456788999999987521 24455666664 89998865
|
| >3l0g_A Nicotinate-nucleotide pyrophosphorylase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.05A {Ehrlichia chaffeensis} | Back alignment and structure |
|---|
Probab=93.32 E-value=0.23 Score=45.12 Aligned_cols=86 Identities=10% Similarity=0.128 Sum_probs=55.0
Q ss_pred HHHHHHHHhcC-CCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHH
Q 020423 183 GEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYAL 261 (326)
Q Consensus 183 ~eiv~avr~~~-~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i 261 (326)
.+.++.+|+.. ..++.|- .++++|..+ .+ ++|+|.|-+..-+ .+.+++.
T Consensus 195 ~~Av~~ar~~~p~~kIeVE-------v~tl~e~~e----Al-~aGaDiImLDn~s------------------~~~l~~a 244 (300)
T 3l0g_A 195 TLAIQRLRKNLKNEYIAIE-------CDNISQVEE----SL-SNNVDMILLDNMS------------------ISEIKKA 244 (300)
T ss_dssp HHHHHHHHHHSSSCCEEEE-------ESSHHHHHH----HH-HTTCSEEEEESCC------------------HHHHHHH
T ss_pred HHHHHHHHHhCCCCCEEEE-------ECCHHHHHH----HH-HcCCCEEEECCCC------------------HHHHHHH
Confidence 45566666654 3444442 234555443 23 4899999876421 2233333
Q ss_pred Hhc-CCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHH
Q 020423 262 LRD-FPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAA 299 (326)
Q Consensus 262 ~~~-~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRal 299 (326)
++. ..++.+.++||| +++.+.++.++|+|.+.+|...
T Consensus 245 v~~~~~~v~leaSGGI-t~~~i~~~A~tGVD~IsvGalt 282 (300)
T 3l0g_A 245 VDIVNGKSVLEVSGCV-NIRNVRNIALTGVDYISIGCIT 282 (300)
T ss_dssp HHHHTTSSEEEEESSC-CTTTHHHHHTTTCSEEECGGGT
T ss_pred HHhhcCceEEEEECCC-CHHHHHHHHHcCCCEEEeCccc
Confidence 321 137899999999 8899999999999999999543
|
| >2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A* | Back alignment and structure |
|---|
Probab=93.25 E-value=0.61 Score=42.68 Aligned_cols=93 Identities=14% Similarity=0.095 Sum_probs=63.0
Q ss_pred CHHHHHHHHHHHHhcCCCcEEEEeccCCC-CCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHH
Q 020423 178 DPKFVGEAMSVIAANTNVPVSVKCRIGVD-DHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYE 256 (326)
Q Consensus 178 r~~~l~eiv~avr~~~~~pv~vK~r~g~~-~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~ 256 (326)
.++.+.+.++.+++.++.|+.+-+-.... ...+.++.++ .+.+.|+|.|++|.+. | .+
T Consensus 51 s~~~l~~~i~~i~~~~~~p~~v~l~v~~~~~~~~~~~~~~----~~~~~g~d~V~~~~g~---------------p--~~ 109 (328)
T 2gjl_A 51 SPEALAAEIARCRELTDRPFGVNLTLLPTQKPVPYAEYRA----AIIEAGIRVVETAGND---------------P--GE 109 (328)
T ss_dssp SHHHHHHHHHHHHHHCSSCCEEEEEECCCSSCCCHHHHHH----HHHHTTCCEEEEEESC---------------C--HH
T ss_pred CHHHHHHHHHHHHHhcCCCeEEEEeccccccCccHHHHHH----HHHhcCCCEEEEcCCC---------------c--HH
Confidence 47778888999988777787776544310 0122333333 3446899999998532 1 34
Q ss_pred HHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhh
Q 020423 257 YYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMV 295 (326)
Q Consensus 257 ~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~i 295 (326)
.+..+. +. ++||+. .+.+.+++..+.+.|+|+|.+
T Consensus 110 ~~~~l~-~~-gi~vi~--~v~t~~~a~~~~~~GaD~i~v 144 (328)
T 2gjl_A 110 HIAEFR-RH-GVKVIH--KCTAVRHALKAERLGVDAVSI 144 (328)
T ss_dssp HHHHHH-HT-TCEEEE--EESSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHH-Hc-CCCEEe--eCCCHHHHHHHHHcCCCEEEE
Confidence 454444 33 788885 478999999999999999988
|
| >3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A* | Back alignment and structure |
|---|
Probab=93.19 E-value=0.15 Score=50.11 Aligned_cols=62 Identities=15% Similarity=0.238 Sum_probs=47.1
Q ss_pred HhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhh
Q 020423 221 VSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMV 295 (326)
Q Consensus 221 ~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~i 295 (326)
.+.++|+|.|.+..... . ....++.++++++.++++||+ .|+|.+.+++..+.+.|+|+|.+
T Consensus 263 aLveaGvd~I~Id~a~g----~--------~~~v~~~i~~i~~~~~~~~vi-~g~v~t~e~a~~~~~aGad~i~v 324 (511)
T 3usb_A 263 ALVKASVDAIVLDTAHG----H--------SQGVIDKVKEVRAKYPSLNII-AGNVATAEATKALIEAGANVVKV 324 (511)
T ss_dssp HHHHTTCSEEEEECSCT----T--------SHHHHHHHHHHHHHCTTSEEE-EEEECSHHHHHHHHHHTCSEEEE
T ss_pred HHHhhccceEEeccccc----c--------hhhhhhHHHHHHHhCCCceEE-eeeeccHHHHHHHHHhCCCEEEE
Confidence 34468999999985431 0 112256788888887778887 47899999999999999999976
|
| >2qiw_A PEP phosphonomutase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: P6G; 1.80A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=93.08 E-value=0.56 Score=41.65 Aligned_cols=190 Identities=14% Similarity=0.089 Sum_probs=108.8
Q ss_pred CCCCChHHHHHHHHHcCCCcEEEecc--eeecccccccc---chhhhhh-----cCCCCCcEEEEe---cCCCHHHHHHH
Q 020423 76 MMDWTDNHYRTLARLISKHAWLYTEM--LAAETIIYQQG---NLDRFLA-----FSPEQHPIVLQI---GGSNLDNLAKA 142 (326)
Q Consensus 76 M~~~s~~~~r~~~~~~Gg~gli~te~--~~~~~~~~~~~---~~~~~~~-----~~~~~~piivQL---~g~~~~~f~~a 142 (326)
|.+.-|.....++.+.| +..+++.. +. ..+.+.+. ..+..+. ....+.|+++-+ ++..+ .+.
T Consensus 24 ~~~ayD~~sA~~~~~aG-~dai~vg~~s~a-~~~G~pD~~~vt~~em~~~~~~I~r~~~~pviaD~~~Gyg~~~---~~~ 98 (255)
T 2qiw_A 24 LPTVWDTWSAGLVEEAG-FSGLTIGSHPVA-DATGSSDGENMNFADYMAVVKKITSAVSIPVSVDVESGYGLSP---ADL 98 (255)
T ss_dssp CCEESSHHHHHHHHHTT-CSCEEECHHHHH-HHTTCCTTTCSCHHHHHHHHHHHHHHCSSCEEEECTTCTTCCH---HHH
T ss_pred EecCcCHHHHHHHHHcC-CCEEEEChHHHH-HhCCCCCCCCcCHHHHHHHHHHHHhcCCCCEEeccCCCcCcHH---HHH
Confidence 44566777777766665 77777763 22 12222221 1122211 122347888876 23344 777
Q ss_pred HHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhc---CCCcEEEEeccC-----CCC-CccHHH
Q 020423 143 TELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAAN---TNVPVSVKCRIG-----VDD-HDSYNQ 213 (326)
Q Consensus 143 A~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~---~~~pv~vK~r~g-----~~~-~~~~~e 213 (326)
++++.++|+++|.|--+... . |..+ -..+...+.|++++++ .++|+.|--|.+ ..+ .+..++
T Consensus 99 ~~~l~~aGa~gv~iEd~~~~-----~---~k~l-~~~~e~~~~I~a~~~a~~~~g~~~~v~aRtd~~~~g~~~~~~~~~~ 169 (255)
T 2qiw_A 99 IAQILEAGAVGINVEDVVHS-----E---GKRV-REAQEHADYIAAARQAADVAGVDVVINGRTDAVKLGADVFEDPMVE 169 (255)
T ss_dssp HHHHHHTTCCEEEECSEEGG-----G---TTEE-CCHHHHHHHHHHHHHHHHHHTCCCEEEEEECHHHHCTTTSSSHHHH
T ss_pred HHHHHHcCCcEEEECCCCCC-----C---CCcc-cCHHHHHHHHHHHHHHHHhcCCCeEEEEEechhhccCCcchHHHHH
Confidence 88888899999999644210 0 2222 2344555556666554 267755544443 111 223566
Q ss_pred HHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEe--CCCCCH-HHHHHHHHhCC
Q 020423 214 LCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLN--GGINTV-DEVNAALRKGA 290 (326)
Q Consensus 214 ~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~--GgI~s~-~da~~~l~~Ga 290 (326)
+++. ++.++++|+|.|.+.+-. ..+.++++.++. ++|+-.+ ++-.++ -...++-+.|+
T Consensus 170 ai~r-a~a~~eAGAd~i~~e~~~-----------------~~~~~~~i~~~~-~~P~n~~~~~~~~~p~~~~~eL~~lGv 230 (255)
T 2qiw_A 170 AIKR-IKLMEQAGARSVYPVGLS-----------------TAEQVERLVDAV-SVPVNITAHPVDGHGAGDLATLAGLGV 230 (255)
T ss_dssp HHHH-HHHHHHHTCSEEEECCCC-----------------SHHHHHHHHTTC-SSCBEEECBTTTBBTTBCHHHHHHTTC
T ss_pred HHHH-HHHHHHcCCcEEEEcCCC-----------------CHHHHHHHHHhC-CCCEEEEecCCCCCCCCCHHHHHHcCC
Confidence 6664 456678999999987521 145666777665 7887666 332122 23566777999
Q ss_pred ChhhhhHH
Q 020423 291 HHVMVGRA 298 (326)
Q Consensus 291 D~V~iGRa 298 (326)
..|..|-.
T Consensus 231 ~~v~~~~~ 238 (255)
T 2qiw_A 231 RRVTFGPL 238 (255)
T ss_dssp CEEECTTH
T ss_pred CEEEEHHH
Confidence 99998876
|
| >3si9_A DHDPS, dihydrodipicolinate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 2.10A {Bartonella henselae} | Back alignment and structure |
|---|
Probab=93.04 E-value=3.6 Score=37.47 Aligned_cols=67 Identities=15% Similarity=0.198 Sum_probs=52.4
Q ss_pred CCCCcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEe
Q 020423 122 PEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKC 201 (326)
Q Consensus 122 ~~~~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~ 201 (326)
....|+++...+.+.++-.+.++.++++|+|++-+- .|..+ . ...+-+.+-.++|.++++.|+.+=-
T Consensus 89 ~grvpViaGvg~~st~~ai~la~~A~~~Gadavlv~--~P~y~-~----------~~~~~l~~~f~~va~a~~lPiilYn 155 (315)
T 3si9_A 89 AKRVPVVAGAGSNSTSEAVELAKHAEKAGADAVLVV--TPYYN-R----------PNQRGLYTHFSSIAKAISIPIIIYN 155 (315)
T ss_dssp TTSSCBEEECCCSSHHHHHHHHHHHHHTTCSEEEEE--CCCSS-C----------CCHHHHHHHHHHHHHHCSSCEEEEE
T ss_pred CCCCcEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEC--CCCCC-C----------CCHHHHHHHHHHHHHcCCCCEEEEe
Confidence 345799999999999999999999999999999885 34421 1 1346677888888888899998753
|
| >1gox_A (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoreductase (oxygen(A)); HET: FMN; 2.00A {Spinacia oleracea} SCOP: c.1.4.1 PDB: 1gyl_A* 1al8_A* 1al7_A* 2cdh_0 | Back alignment and structure |
|---|
Probab=93.02 E-value=0.57 Score=43.88 Aligned_cols=42 Identities=21% Similarity=0.299 Sum_probs=35.0
Q ss_pred ccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhh
Q 020423 253 LKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVG 296 (326)
Q Consensus 253 ~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iG 296 (326)
..|+.+.++++.. ++||+. +++.+++++..+.+.|+|+|.++
T Consensus 212 ~~~~~i~~l~~~~-~~pv~v-K~~~~~e~a~~a~~~Gad~I~vs 253 (370)
T 1gox_A 212 LSWKDVAWLQTIT-SLPILV-KGVITAEDARLAVQHGAAGIIVS 253 (370)
T ss_dssp CCHHHHHHHHHHC-CSCEEE-ECCCSHHHHHHHHHTTCSEEEEC
T ss_pred chHHHHHHHHHHh-CCCEEE-EecCCHHHHHHHHHcCCCEEEEC
Confidence 3467788887775 899985 77899999999999999999883
|
| >2ze3_A DFA0005; organic waste LEFT-OVER decomposition, alkaliphilic, ICL/PEPM superfamily, alpha-ketoglutarate LIG isomerase; HET: AKG; 1.65A {Deinococcus ficus} | Back alignment and structure |
|---|
Probab=92.94 E-value=1.2 Score=40.02 Aligned_cols=143 Identities=12% Similarity=0.105 Sum_probs=80.0
Q ss_pred HHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHHH
Q 020423 141 KATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYK 220 (326)
Q Consensus 141 ~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia~ 220 (326)
-.|+.+.++|||.|=+...+-.......| ...-..+.+.+.++.|.+.++.||++-+-.|+.+ +.++..+.+.+
T Consensus 27 ~sA~~~~~aG~~ai~vsg~s~a~~~G~pD----~~~vt~~em~~~~~~I~~~~~~pviaD~d~Gyg~--~~~~~~~~v~~ 100 (275)
T 2ze3_A 27 ASARLLEAAGFTAIGTTSAGIAHARGRTD----GQTLTRDEMGREVEAIVRAVAIPVNADIEAGYGH--APEDVRRTVEH 100 (275)
T ss_dssp HHHHHHHHHTCSCEEECHHHHHHHSCCCS----SSSSCHHHHHHHHHHHHHHCSSCEEEECTTCSSS--SHHHHHHHHHH
T ss_pred HHHHHHHHcCCCEEEECcHHHHHhCCCCC----CCCCCHHHHHHHHHHHHhhcCCCEEeecCCCCCC--CHHHHHHHHHH
Confidence 45677788899999885210000000111 1123456677777888888889999999998542 33444444444
Q ss_pred HhhhCCccEEEEecCCcccCCCCcCCcCCCCCc-cHHHHHHHHhcCC--CceEEEeCCCCC--------H-HHHHHH---
Q 020423 221 VSSLSPTRHFIIHSRKALLNGISPAENRTIPPL-KYEYYYALLRDFP--DLTFTLNGGINT--------V-DEVNAA--- 285 (326)
Q Consensus 221 ~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~-~~~~i~~i~~~~~--~iPVIa~GgI~s--------~-~da~~~--- 285 (326)
+.++|++.+++.+... +.+. ..++.. ..+.++.+++... ++|+..+|.... + +.++++
T Consensus 101 -l~~aGaagv~iED~~~-~~~k-----~l~~~~e~~~~I~aa~~a~~~~g~~~~i~aRtda~~~~~g~~~~~~~~~ai~R 173 (275)
T 2ze3_A 101 -FAALGVAGVNLEDATG-LTPT-----ELYDLDSQLRRIEAARAAIDASGVPVFLNARTDTFLKGHGATDEERLAETVRR 173 (275)
T ss_dssp -HHHTTCSEEEEECBCS-SSSS-----CBCCHHHHHHHHHHHHHHHHHHTSCCEEEEECCTTTTTCSSSHHHHHHHHHHH
T ss_pred -HHHcCCcEEEECCCcC-CCCC-----ccCCHHHHHHHHHHHHHhHhhcCCCeEEEEechhhhccccccchhhHHHHHHH
Confidence 4569999999987643 1111 111111 1223443333211 577777776654 1 223333
Q ss_pred ----HHhCCChhhhh
Q 020423 286 ----LRKGAHHVMVG 296 (326)
Q Consensus 286 ----l~~GaD~V~iG 296 (326)
.+.|||+|.+=
T Consensus 174 a~ay~eAGAd~i~~e 188 (275)
T 2ze3_A 174 GQAYADAGADGIFVP 188 (275)
T ss_dssp HHHHHHTTCSEEECT
T ss_pred HHHHHHCCCCEEEEC
Confidence 33799999874
|
| >3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A | Back alignment and structure |
|---|
Probab=92.93 E-value=5.3 Score=36.32 Aligned_cols=136 Identities=13% Similarity=0.068 Sum_probs=82.8
Q ss_pred CCCcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEec
Q 020423 123 EQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCR 202 (326)
Q Consensus 123 ~~~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r 202 (326)
...|+++...+.+.++-.+.++.++++|+|++-+- .|... . ...+-+.+-.++|.++++.|+.+=--
T Consensus 91 grvpViaGvg~~st~eai~la~~A~~~Gadavlv~--~P~y~-~----------~s~~~l~~~f~~va~a~~lPiilYn~ 157 (314)
T 3qze_A 91 GRIPVIAGTGANSTREAVALTEAAKSGGADACLLV--TPYYN-K----------PTQEGMYQHFRHIAEAVAIPQILYNV 157 (314)
T ss_dssp TSSCEEEECCCSSHHHHHHHHHHHHHTTCSEEEEE--CCCSS-C----------CCHHHHHHHHHHHHHHSCSCEEEEEC
T ss_pred CCCcEEEeCCCcCHHHHHHHHHHHHHcCCCEEEEc--CCCCC-C----------CCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 45799999998999999999999999999999985 34421 1 13566778888888888999987532
Q ss_pred c---CCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCC-CceEEEeCCCCC
Q 020423 203 I---GVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFP-DLTFTLNGGINT 278 (326)
Q Consensus 203 ~---g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~-~iPVIa~GgI~s 278 (326)
+ |.+- +.+. +.++.+.-.+-.|--+.+ ++..+.++++... +..| .+|.=
T Consensus 158 P~~tg~~l--~~~~----~~~La~~pnIvgiKdssg------------------d~~~~~~~~~~~~~~f~v-~~G~d-- 210 (314)
T 3qze_A 158 PGRTSCDM--LPET----VERLSKVPNIIGIKEATG------------------DLQRAKEVIERVGKDFLV-YSGDD-- 210 (314)
T ss_dssp HHHHSCCC--CHHH----HHHHHTSTTEEEEEECSC------------------CHHHHHHHHHHSCTTSEE-EESCG--
T ss_pred ccccCCCC--CHHH----HHHHhcCCCEEEEEcCCC------------------CHHHHHHHHHHcCCCeEE-EecCh--
Confidence 2 3222 2222 223332223433332211 2444555554432 3443 55541
Q ss_pred HHHHHHHHHhCCChhhhhHHH
Q 020423 279 VDEVNAALRKGAHHVMVGRAA 299 (326)
Q Consensus 279 ~~da~~~l~~GaD~V~iGRal 299 (326)
+.+...+..|++++..+.+-
T Consensus 211 -~~~l~~l~~Ga~G~is~~an 230 (314)
T 3qze_A 211 -ATAVELMLLGGKGNISVTAN 230 (314)
T ss_dssp -GGHHHHHHTTCCEEEESGGG
T ss_pred -HHHHHHHHCCCCEEEecHHh
Confidence 23566677888888766543
|
| >1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5 | Back alignment and structure |
|---|
Probab=92.88 E-value=0.4 Score=41.11 Aligned_cols=130 Identities=16% Similarity=0.082 Sum_probs=84.1
Q ss_pred EEEEecCC----CHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEec
Q 020423 127 IVLQIGGS----NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCR 202 (326)
Q Consensus 127 iivQL~g~----~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r 202 (326)
+.+|..+. +++...+.|+.+.++|++++.++ + + +.++++++.++.|+.-.++
T Consensus 9 ~~~q~~~~~p~~~~~~~~~~a~~~~~~Ga~~i~~~--------------~------~----~~i~~i~~~~~~pv~~~~~ 64 (223)
T 1y0e_A 9 VSCQALPDEPLHSSFIMSKMALAAYEGGAVGIRAN--------------T------K----EDILAIKETVDLPVIGIVK 64 (223)
T ss_dssp EECCCCTTSTTCCHHHHHHHHHHHHHHTCSEEEEE--------------S------H----HHHHHHHHHCCSCEEEECB
T ss_pred EEecCCCCCCCCCCccHHHHHHHHHHCCCeeeccC--------------C------H----HHHHHHHHhcCCCEEeeec
Confidence 55777766 67889999999999999999763 1 2 4577788888999843222
Q ss_pred cCCCC-----CccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCC
Q 020423 203 IGVDD-----HDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGIN 277 (326)
Q Consensus 203 ~g~~~-----~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~ 277 (326)
....+ ..+.+++ .. +.++|+|.++++..... .+ . ....+.+..+++.+++++++. ++.
T Consensus 65 ~~~~~~~~~i~~~~~~i----~~-~~~~Gad~v~l~~~~~~----~p----~--~~~~~~i~~~~~~~~~~~v~~--~~~ 127 (223)
T 1y0e_A 65 RDYDHSDVFITATSKEV----DE-LIESQCEVIALDATLQQ----RP----K--ETLDELVSYIRTHAPNVEIMA--DIA 127 (223)
T ss_dssp CCCTTCCCCBSCSHHHH----HH-HHHHTCSEEEEECSCSC----CS----S--SCHHHHHHHHHHHCTTSEEEE--ECS
T ss_pred cCCCccccccCCcHHHH----HH-HHhCCCCEEEEeeeccc----Cc----c--cCHHHHHHHHHHhCCCceEEe--cCC
Confidence 22111 0122222 22 23589999999864310 00 0 011456666666655777765 668
Q ss_pred CHHHHHHHHHhCCChhhhhH
Q 020423 278 TVDEVNAALRKGAHHVMVGR 297 (326)
Q Consensus 278 s~~da~~~l~~GaD~V~iGR 297 (326)
+++++.++.+.|+|+|+++-
T Consensus 128 t~~e~~~~~~~G~d~i~~~~ 147 (223)
T 1y0e_A 128 TVEEAKNAARLGFDYIGTTL 147 (223)
T ss_dssp SHHHHHHHHHTTCSEEECTT
T ss_pred CHHHHHHHHHcCCCEEEeCC
Confidence 99999998889999997653
|
| >2vc6_A MOSA, dihydrodipicolinate synthase; DHDPS, TIM barrel, schiff base, lyase; HET: MCL; 1.95A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=92.87 E-value=4 Score=36.65 Aligned_cols=65 Identities=14% Similarity=0.178 Sum_probs=50.8
Q ss_pred CCCcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEE
Q 020423 123 EQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVK 200 (326)
Q Consensus 123 ~~~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK 200 (326)
...|+++...+.+.++-.+.++.++++|+|++-+.. |..+ . ...+-+.+-.++|.++++.|+.+=
T Consensus 68 gr~pviaGvg~~~t~~ai~la~~A~~~Gadavlv~~--P~y~-~----------~s~~~l~~~f~~ia~a~~lPiilY 132 (292)
T 2vc6_A 68 GRVPVIAGAGSNSTAEAIAFVRHAQNAGADGVLIVS--PYYN-K----------PTQEGIYQHFKAIDAASTIPIIVY 132 (292)
T ss_dssp TSSCBEEECCCSSHHHHHHHHHHHHHTTCSEEEEEC--CCSS-C----------CCHHHHHHHHHHHHHHCSSCEEEE
T ss_pred CCCcEEEecCCccHHHHHHHHHHHHHcCCCEEEEcC--CCCC-C----------CCHHHHHHHHHHHHHhCCCCEEEE
Confidence 457899999988999999999999999999998863 4321 1 134667777778888889998874
|
| >1rpx_A Protein (ribulose-phosphate 3-epimerase); chloroplast, calvin cycle, oxidative pentose PH pathway; 2.30A {Solanum tuberosum} SCOP: c.1.2.2 | Back alignment and structure |
|---|
Probab=92.83 E-value=0.29 Score=42.31 Aligned_cols=87 Identities=14% Similarity=0.124 Sum_probs=55.9
Q ss_pred EEEEecCCCHHHHHHHHHHHHHCCCCEEEecCC-CCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCC
Q 020423 127 IVLQIGGSNLDNLAKATELANAYNYDEINLNCG-CPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGV 205 (326)
Q Consensus 127 iivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g-~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~ 205 (326)
++..+...+++.+.+.++.+.++|+|.+++-.. -+...+.+ +| .++++++++.++.|+.+-+-..
T Consensus 13 i~p~i~a~d~~~~~~~i~~~~~~G~d~i~l~~~dg~f~~~~~---~~----------~~~i~~l~~~~~~~~~v~l~vn- 78 (230)
T 1rpx_A 13 VSPSILSANFSKLGEQVKAIEQAGCDWIHVDVMDGRFVPNIT---IG----------PLVVDSLRPITDLPLDVHLMIV- 78 (230)
T ss_dssp EEEBGGGSCGGGHHHHHHHHHHTTCCCEEEEEEBSSSSSCBC---CC----------HHHHHHHGGGCCSCEEEEEESS-
T ss_pred EEEEeecCCHHHHHHHHHHHHHCCCCEEEEeeccCCcccccc---cC----------HHHHHHHHhccCCcEEEEEEec-
Confidence 556667778888999999999999999998631 11101111 12 3667777777777777665442
Q ss_pred CCCccHHHHHHHHHHHhhhCCccEEEEecC
Q 020423 206 DDHDSYNQLCDFIYKVSSLSPTRHFIIHSR 235 (326)
Q Consensus 206 ~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~ 235 (326)
+ .++. +... .++|+|.+++|+.
T Consensus 79 -d---~~~~---v~~~-~~~Gad~v~vh~~ 100 (230)
T 1rpx_A 79 -E---PDQR---VPDF-IKAGADIVSVHCE 100 (230)
T ss_dssp -S---HHHH---HHHH-HHTTCSEEEEECS
T ss_pred -C---HHHH---HHHH-HHcCCCEEEEEec
Confidence 2 2222 2223 4699999999975
|
| >1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A* | Back alignment and structure |
|---|
Probab=92.73 E-value=2.1 Score=38.76 Aligned_cols=126 Identities=15% Similarity=0.070 Sum_probs=76.0
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC--CCcEEEEeccCCCCCccHH
Q 020423 135 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYN 212 (326)
Q Consensus 135 ~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~--~~pv~vK~r~g~~~~~~~~ 212 (326)
|.+.+.+.+++..+.|.|+|-++.. +++ +.+| ..+.-.++++.+++.+ ..||.+.+.. .+..
T Consensus 31 D~~~l~~lv~~li~~Gv~gl~v~Gt--------TGE-~~~L--s~eEr~~v~~~~~~~~~grvpViaGvg~-----~~t~ 94 (301)
T 1xky_A 31 DFAKTTKLVNYLIDNGTTAIVVGGT--------TGE-SPTL--TSEEKVALYRHVVSVVDKRVPVIAGTGS-----NNTH 94 (301)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEESST--------TTT-GGGS--CHHHHHHHHHHHHHHHTTSSCEEEECCC-----SCHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEECcc--------ccC-hhhC--CHHHHHHHHHHHHHHhCCCceEEeCCCC-----CCHH
Confidence 6788999999999999999999642 233 2222 2333344445444433 4788876443 2344
Q ss_pred HHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEE-e-----CCCCCHHHHHHHH
Q 020423 213 QLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTL-N-----GGINTVDEVNAAL 286 (326)
Q Consensus 213 e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa-~-----GgI~s~~da~~~l 286 (326)
+.++ .++..++.|+|.+-+.... +...+ ...-++++.++.+.. ++||+. | |--.+++.+.++.
T Consensus 95 ~ai~-la~~A~~~Gadavlv~~P~--y~~~s-------~~~l~~~f~~va~a~-~lPiilYn~P~~tg~~l~~~~~~~La 163 (301)
T 1xky_A 95 ASID-LTKKATEVGVDAVMLVAPY--YNKPS-------QEGMYQHFKAIAEST-PLPVMLYNVPGRSIVQISVDTVVRLS 163 (301)
T ss_dssp HHHH-HHHHHHHTTCSEEEEECCC--SSCCC-------HHHHHHHHHHHHHTC-SSCEEEEECHHHHSSCCCHHHHHHHH
T ss_pred HHHH-HHHHHHhcCCCEEEEcCCC--CCCCC-------HHHHHHHHHHHHHhc-CCCEEEEeCccccCCCCCHHHHHHHH
Confidence 5555 3556678999999886432 11100 011245566666554 899866 3 4446888887775
Q ss_pred H
Q 020423 287 R 287 (326)
Q Consensus 287 ~ 287 (326)
+
T Consensus 164 ~ 164 (301)
T 1xky_A 164 E 164 (301)
T ss_dssp T
T ss_pred c
Confidence 4
|
| >1u83_A Phosphosulfolactate synthase; structural genomics, phosphosulfolactate PSI, protein structure initiative, midwest center for struc genomics; 2.20A {Bacillus subtilis} SCOP: c.1.27.1 | Back alignment and structure |
|---|
Probab=92.68 E-value=0.43 Score=42.64 Aligned_cols=85 Identities=13% Similarity=0.176 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCC-----ccHH
Q 020423 138 NLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDH-----DSYN 212 (326)
Q Consensus 138 ~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~-----~~~~ 212 (326)
.|.+..+.+++.|||.|||+-|+-.- ..+.-.++++ ++.+. +.|+.-.|..+. .++.
T Consensus 111 ~~~~yl~~~k~lGF~~IEISdGti~l--------------~~~~~~~lI~---~a~~~-f~Vl~EvG~K~~~~~~~~~~~ 172 (276)
T 1u83_A 111 KVNEFHRYCTYFGCEYIEISNGTLPM--------------TNKEKAAYIA---DFSDE-FLVLSEVGSKDAELASRQSSE 172 (276)
T ss_dssp CHHHHHHHHHHTTCSEEEECCSSSCC--------------CHHHHHHHHH---HHTTT-SEEEEECSCCC------CCST
T ss_pred cHHHHHHHHHHcCCCEEEECCCcccC--------------CHHHHHHHHH---HHHhh-cEEeeeccccCccccCCCCHH
Confidence 56677788899999999997654321 1222333333 33444 777777765443 2345
Q ss_pred HHHHHHHHHhhhCCccEEEEecCCcccCC
Q 020423 213 QLCDFIYKVSSLSPTRHFIIHSRKALLNG 241 (326)
Q Consensus 213 e~~~~ia~~le~~Gvd~I~v~~~~~~~~g 241 (326)
++++.+.+-+ ++|+++|.+.+|+....|
T Consensus 173 ~~I~~~~~dL-eAGA~~ViiEaRESG~~G 200 (276)
T 1u83_A 173 EWLEYIVEDM-EAGAEKVITEARESGTGG 200 (276)
T ss_dssp HHHHHHHHHH-HHTEEEEEEC--------
T ss_pred HHHHHHHHHH-HCCCcEEEEeeeccCCCC
Confidence 6666566555 489999999998753334
|
| >3g8r_A Probable spore coat polysaccharide biosynthesis P; structural genomics, protein structure initiative; 2.49A {Chromobacterium violaceum atcc 12472} | Back alignment and structure |
|---|
Probab=92.66 E-value=3.5 Score=38.19 Aligned_cols=97 Identities=12% Similarity=0.123 Sum_probs=57.1
Q ss_pred cCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccH
Q 020423 176 MLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKY 255 (326)
Q Consensus 176 ~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~ 255 (326)
+++..++.++ ...+.||.+|... .+++|+... ++.+.+.|-+.+-+|.-..+ ..+ ....++
T Consensus 122 ~~N~pLL~~v-----a~~gKPviLstGm-----stl~Ei~~A-ve~i~~~g~~viLlhC~s~Y---Pt~-----~~~~nL 182 (350)
T 3g8r_A 122 FTDWPLLERI-----ARSDKPVVASTAG-----ARREDIDKV-VSFMLHRGKDLTIMHCVAEY---PTP-----DDHLHL 182 (350)
T ss_dssp TTCHHHHHHH-----HTSCSCEEEECTT-----CCHHHHHHH-HHHHHTTTCCEEEEECCCCS---SCC-----GGGCCT
T ss_pred ccCHHHHHHH-----HhhCCcEEEECCC-----CCHHHHHHH-HHHHHHcCCCEEEEecCCCC---CCC-----cccCCH
Confidence 3555655544 2469999998544 245565553 33445567787777764321 111 123456
Q ss_pred HHHHHHHhcCCCceEEEe----CCCCCHHHHHHHHHhCCChh
Q 020423 256 EYYYALLRDFPDLTFTLN----GGINTVDEVNAALRKGAHHV 293 (326)
Q Consensus 256 ~~i~~i~~~~~~iPVIa~----GgI~s~~da~~~l~~GaD~V 293 (326)
..+..+++.++++||..+ |+.. .-+..++..||+.|
T Consensus 183 ~aI~~Lk~~fp~lpVG~SdHt~g~~~--~~~~AAvAlGA~vI 222 (350)
T 3g8r_A 183 ARIKTLRQQYAGVRIGYSTHEDPDLM--EPIMLAVAQGATVF 222 (350)
T ss_dssp THHHHHHHHCTTSEEEEEECCCSSCC--HHHHHHHHTTCCEE
T ss_pred HHHHHHHHHCCCCCEEcCCCCCCCcc--HHHHHHHHcCCCEE
Confidence 677777777768999777 3331 23456777888754
|
| >3b8i_A PA4872 oxaloacetate decarboxylase; alpha/beta barrel, helix swapping, lyase; 1.90A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=92.58 E-value=0.99 Score=40.79 Aligned_cols=164 Identities=12% Similarity=0.060 Sum_probs=87.3
Q ss_pred hhhcCCCCCcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCC-CCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCC
Q 020423 117 FLAFSPEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCG-CPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNV 195 (326)
Q Consensus 117 ~~~~~~~~~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g-~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~ 195 (326)
+.+.+..+.|+. =+...+ .-.|+.+.++|||.|=+..+ .-.......|. ..-..+.+.+.++.|.+.++.
T Consensus 13 lr~l~~~~~~i~-~~~a~D----~~sA~i~e~aGf~ai~vs~s~~a~~~lG~pD~----~~vt~~em~~~~~~I~r~~~~ 83 (287)
T 3b8i_A 13 FRALLDSSRCYH-TASVFD----PMSARIAADLGFECGILGGSVASLQVLAAPDF----ALITLSEFVEQATRIGRVARL 83 (287)
T ss_dssp HHHHHHSSCCEE-CEECCS----HHHHHHHHHTTCSCEEECHHHHHHHHHSCCSS----SCSCHHHHHHHHHHHHTTCSS
T ss_pred HHHHHhCCCcEE-EecCCC----HHHHHHHHHcCCCEEEeCcHHHHHHhcCCCCC----CCCCHHHHHHHHHHHHhcCCC
Confidence 333444455443 234455 34677888899999987421 00000001111 113456677778888888899
Q ss_pred cEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCc-ccCCCCcCCcCCCCCcc--HHHHHHHHhcCCCceEEE
Q 020423 196 PVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKA-LLNGISPAENRTIPPLK--YEYYYALLRDFPDLTFTL 272 (326)
Q Consensus 196 pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~-~~~g~~~~~~~~~~~~~--~~~i~~i~~~~~~iPVIa 272 (326)
||++-+-.|+. +.++..+.+.++ +++|++.|++.+... ...|+.. .. +-+.. .+.++.+++...+-++..
T Consensus 84 PviaD~d~Gyg---~~~~~~~~v~~l-~~aGa~gv~iED~~~pKrcgh~~--gk-l~~~~e~~~~I~aa~~a~~~~~~~i 156 (287)
T 3b8i_A 84 PVIADADHGYG---NALNVMRTVVEL-ERAGIAALTIEDTLLPAQFGRKS--TD-LICVEEGVGKIRAALEARVDPALTI 156 (287)
T ss_dssp CEEEECTTCSS---SHHHHHHHHHHH-HHHTCSEEEEECBCCSCCTTTCT--TC-BCCHHHHHHHHHHHHHHCCSTTSEE
T ss_pred CEEEECCCCCC---CHHHHHHHHHHH-HHhCCeEEEEcCCCCccccCCCC--CC-ccCHHHHHHHHHHHHHcCCCCCcEE
Confidence 99999988854 344455544444 469999999987642 1122221 11 12211 233444444322222333
Q ss_pred eCCCC--------CHHHHHHHHHhCCChhhhh
Q 020423 273 NGGIN--------TVDEVNAALRKGAHHVMVG 296 (326)
Q Consensus 273 ~GgI~--------s~~da~~~l~~GaD~V~iG 296 (326)
+|... ..+++..+.+.|||+|.+=
T Consensus 157 ~aRtdaa~~gl~~ai~Ra~ay~eAGAd~i~~e 188 (287)
T 3b8i_A 157 IARTNAELIDVDAVIQRTLAYQEAGADGICLV 188 (287)
T ss_dssp EEEEETTTSCHHHHHHHHHHHHHTTCSEEEEE
T ss_pred EEechhhhcCHHHHHHHHHHHHHcCCCEEEec
Confidence 33322 2233444555899999874
|
| >1oy0_A Ketopantoate hydroxymethyltransferase; domain swapping, structural genomics, PSI, protein structure initiative; 2.80A {Mycobacterium tuberculosis} SCOP: c.1.12.8 | Back alignment and structure |
|---|
Probab=92.55 E-value=0.75 Score=41.39 Aligned_cols=155 Identities=14% Similarity=0.112 Sum_probs=81.4
Q ss_pred CCCChHHHHHHHHHcCCCcEEEecceeec-ccccccc---chhhhhh----c-CCCCCcEE-EEec-C---CCHHHHHH-
Q 020423 77 MDWTDNHYRTLARLISKHAWLYTEMLAAE-TIIYQQG---NLDRFLA----F-SPEQHPIV-LQIG-G---SNLDNLAK- 141 (326)
Q Consensus 77 ~~~s~~~~r~~~~~~Gg~gli~te~~~~~-~~~~~~~---~~~~~~~----~-~~~~~pii-vQL~-g---~~~~~f~~- 141 (326)
.+.=|...+.++.+.| +..+.++..... -+.+.+. ..+.++. + .....+++ +-+- | .++++-.+
T Consensus 39 ~tayDa~sA~l~e~aG-~d~ilvGdSl~~~~lG~~dt~~vTldemi~h~~aV~r~~~~~~vvaD~pfgsy~~s~~~a~~n 117 (281)
T 1oy0_A 39 LTAYDYSTARIFDEAG-IPVLLVGDSAANVVYGYDTTVPISIDELIPLVRGVVRGAPHALVVADLPFGSYEAGPTAALAA 117 (281)
T ss_dssp EECCSHHHHHHHHTTT-CCEEEECTTHHHHTTCCSSSSSCCGGGTHHHHHHHHHHCTTSEEEEECCTTSSTTCHHHHHHH
T ss_pred EeCcCHHHHHHHHHcC-CCEEEECHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCCCeEEEECCCCcccCCHHHHHHH
Confidence 3556777777766665 888877642221 1111111 1122211 1 12334444 4432 2 25766555
Q ss_pred HHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCC-------------CCC
Q 020423 142 ATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGV-------------DDH 208 (326)
Q Consensus 142 aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~-------------~~~ 208 (326)
+.+..+++|+++|.|--+ +...+.++++.+ .++||.--+-+.. .+.
T Consensus 118 a~rl~~eaGa~aVklEdg--------------------~e~~~~I~al~~-agIpV~gHiGLtPqsv~~~ggf~v~grt~ 176 (281)
T 1oy0_A 118 ATRFLKDGGAHAVKLEGG--------------------ERVAEQIACLTA-AGIPVMAHIGFTPQSVNTLGGFRVQGRGD 176 (281)
T ss_dssp HHHHHHTTCCSEEEEEBS--------------------GGGHHHHHHHHH-HTCCEEEEEECCC--------------CH
T ss_pred HHHHHHHhCCeEEEECCc--------------------HHHHHHHHHHHH-CCCCEEeeecCCcceecccCCeEEEeCcH
Confidence 555556699999999532 012333444433 2678762221110 111
Q ss_pred ccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeC
Q 020423 209 DSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNG 274 (326)
Q Consensus 209 ~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~G 274 (326)
..+++++. ++.++++|+|.|.+.+-. .+..+++.++. ++|+|+-|
T Consensus 177 -~a~~~i~r-A~a~~eAGA~~ivlE~vp------------------~~~a~~it~~l-~iP~igIG 221 (281)
T 1oy0_A 177 -AAEQTIAD-AIAVAEAGAFAVVMEMVP------------------AELATQITGKL-TIPTVGIG 221 (281)
T ss_dssp -HHHHHHHH-HHHHHHHTCSEEEEESCC------------------HHHHHHHHHHC-SSCEEEES
T ss_pred -HHHHHHHH-HHHHHHcCCcEEEEecCC------------------HHHHHHHHHhC-CCCEEEeC
Confidence 23455553 456788999999987521 24456666665 89998865
|
| >4h2h_A Mandelate racemase/muconate lactonizing enzyme; enolase, mandelate racemase subgroup, enzyme function initia EFI, structural genomics; HET: 0XW; 1.70A {Pelagibaca bermudensis} PDB: 2pmq_A* | Back alignment and structure |
|---|
Probab=92.55 E-value=3 Score=38.80 Aligned_cols=129 Identities=11% Similarity=0.077 Sum_probs=80.3
Q ss_pred cEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC-C--CcEEEEec
Q 020423 126 PIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-N--VPVSVKCR 202 (326)
Q Consensus 126 piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~-~--~pv~vK~r 202 (326)
|+-..+...++++..+.++...+.||..+-+..|.. ..+.-.+.++++|+++ + +.+.+-..
T Consensus 141 ~~y~s~~~~~~~~~~~~a~~~~~~G~~~~KiKvg~~----------------~~~~di~~v~~vr~a~~g~~~~l~vDaN 204 (376)
T 4h2h_A 141 SSYYSLGVMEPDEAARQALEKQREGYSRLQVKLGAR----------------PIEIDIEAIRKVWEAVRGTGIALAADGN 204 (376)
T ss_dssp ECEEEECSCCHHHHHHHHHHHHHHTCSEEEEECCSS----------------CHHHHHHHHHHHHHHHTTSCCEEEEECT
T ss_pred eEeeecccCCHHHHHHHHHHHHhcCceEEEEecCCC----------------CHHHHHHHHHHHHhhccCCeeEEEEeec
Confidence 344556667899999999888889999999976521 1233345666676655 3 34444433
Q ss_pred cCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHH
Q 020423 203 IGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEV 282 (326)
Q Consensus 203 ~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da 282 (326)
.+| +.++..++ .+.+++.++ ++. . + .+ .++.+.++++. .++||.+-=.+.+..++
T Consensus 205 ~~~----~~~~A~~~-~~~l~~~~~-~iE----e-----------P-~~--~~~~~~~l~~~-~~~pia~dE~~~~~~~~ 259 (376)
T 4h2h_A 205 RGW----TTRDALRF-SRECPDIPF-VME----Q-----------P-CN--SFEDLEAIRPL-CHHALYMDEDGTSLNTV 259 (376)
T ss_dssp TCC----CHHHHHHH-HHHCTTSCE-EEE----S-----------C-SS--SHHHHHHHGGG-CCSCEEESTTCCSHHHH
T ss_pred cCC----CHHHHHHH-HHHHhhccc-ccc----C-----------C-cc--hhhhHhhhhhc-ccCccccCcccCCHHHH
Confidence 344 34455553 445566654 331 0 0 11 25555666555 47888877778888998
Q ss_pred HHHHHhC-CChhhh
Q 020423 283 NAALRKG-AHHVMV 295 (326)
Q Consensus 283 ~~~l~~G-aD~V~i 295 (326)
.++++.| +|.|++
T Consensus 260 ~~~~~~~~~d~v~~ 273 (376)
T 4h2h_A 260 ITAAATSLVDGFGM 273 (376)
T ss_dssp HHHHHTTCCSEECC
T ss_pred HHHHHhhccCcccc
Confidence 8888865 677664
|
| >3pfr_A Mandelate racemase/muconate lactonizing protein; emolase superfamily fold, D-glucarate dehydratase, D-glucara isomerase; HET: GKR; 1.90A {Actinobacillus succinogenes} PDB: 3n6j_A 3n6h_A* 4gyp_C* | Back alignment and structure |
|---|
Probab=92.55 E-value=0.72 Score=44.44 Aligned_cols=123 Identities=8% Similarity=-0.004 Sum_probs=76.4
Q ss_pred CCHHHHHHHHHHHHH-CCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC-CCcEEEEeccCCCCCccH
Q 020423 134 SNLDNLAKATELANA-YNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSY 211 (326)
Q Consensus 134 ~~~~~f~~aA~~a~~-aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~-~~pv~vK~r~g~~~~~~~ 211 (326)
.+++++++.|+.+.+ .||..+-+..|.+ +++.-.+.+++||++. +..+.+-...+| +.
T Consensus 184 ~~~e~~~~~a~~~~~~~Gf~~~KlKvG~~----------------~~~~Di~~v~avRea~pd~~L~vDaN~~w----~~ 243 (455)
T 3pfr_A 184 MDTQAVIELAAASKDRYGFKDFKLKGGVF----------------EGSKEIDTVIELKKHFPDARITLDPNGCW----SL 243 (455)
T ss_dssp CSHHHHHHHHHHHHHHHCCSCEEEECSSS----------------CHHHHHHHHHHHHHHCTTCCEEEECTTBS----CH
T ss_pred CCHHHHHHHHHHHHHhCCCCEEEEcCCCC----------------CHHHHHHHHHHHHHhCCCCeEeecCCCCC----CH
Confidence 478999998888765 6999999976532 1223346678888875 344544433333 34
Q ss_pred HHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCcc----HHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHH
Q 020423 212 NQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLK----YEYYYALLRDFPDLTFTLNGGINTVDEVNAALR 287 (326)
Q Consensus 212 ~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~----~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~ 287 (326)
++..+ +.+.+++. +.+|. . ..++.+ ++.++++.+.. .+||.+.=-+.+.+++.++++
T Consensus 244 ~~A~~-~~~~L~~~-l~~iE----e------------P~~~~d~~~~~~~~~~l~~~~-~iPIa~dE~~~~~~~~~~~i~ 304 (455)
T 3pfr_A 244 DEAIQ-LCKGLNDV-LTYAE----D------------PCIGENGYSGREIMAEFRRRT-GIPTATNMIATNWREMCHAIM 304 (455)
T ss_dssp HHHHH-HHTTCTTT-CSEEE----S------------CBCCBTTBCHHHHHHHHHHHH-CCCEEESSSCCSHHHHHHHHH
T ss_pred HHHHH-HHHhhccc-ceeee----c------------CCChhhccchHHHHHHHHhcC-CCCEEeCCCcCCHHHHHHHHH
Confidence 55555 34455655 66653 1 112222 46666776654 788777556778888888888
Q ss_pred hC-CChhhh
Q 020423 288 KG-AHHVMV 295 (326)
Q Consensus 288 ~G-aD~V~i 295 (326)
.| +|.+++
T Consensus 305 ~~a~di~~~ 313 (455)
T 3pfr_A 305 LQSVDIPLA 313 (455)
T ss_dssp HTCCSEEBC
T ss_pred cCCCCEEEe
Confidence 65 777654
|
| >3bw2_A 2-nitropropane dioxygenase; TIM barrel, oxidoreductase; HET: FMN; 2.10A {Streptomyces ansochromogenes} PDB: 3bw4_A* 3bw3_A* | Back alignment and structure |
|---|
Probab=92.52 E-value=0.94 Score=42.22 Aligned_cols=100 Identities=17% Similarity=0.094 Sum_probs=64.6
Q ss_pred CHHHHHHHHHHHHhcCCCcEEEEeccCCCC---CccHHHH-------------------------HHHHHHHhhhCCccE
Q 020423 178 DPKFVGEAMSVIAANTNVPVSVKCRIGVDD---HDSYNQL-------------------------CDFIYKVSSLSPTRH 229 (326)
Q Consensus 178 r~~~l~eiv~avr~~~~~pv~vK~r~g~~~---~~~~~e~-------------------------~~~ia~~le~~Gvd~ 229 (326)
.++.+.+.++.+++.++.|+.|.+-..... .....+. .+...+.+.+.|+|.
T Consensus 46 s~~~l~~~i~~~~~~~~~p~gVnl~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 125 (369)
T 3bw2_A 46 TADGMYQEIKRLRGLTGRPFGVNVFMPQPELAESGAVEVYAHQLAGEAAWYETELGDPDGGRDDGYDAKLAVLLDDPVPV 125 (369)
T ss_dssp CHHHHHHHHHHHHHHCCSCEEEEEECCCCCC---CHHHHHHHHTHHHHHHTTCCCCCSCSCSSTTHHHHHHHHHHSCCSE
T ss_pred CHHHHHHHHHHHHHhCCCCeEEEEecCCCCcccHHHHHHHHHHHHHHHHHcCCCcCcccccccccHHHHHHHHHhcCCCE
Confidence 478888889999888877887765432221 0111111 011233445689999
Q ss_pred EEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhh-hH
Q 020423 230 FIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMV-GR 297 (326)
Q Consensus 230 I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~i-GR 297 (326)
|++|.+.. ..+.+.++++ . ++||+. .+.+.+++..+.+.|+|+|.+ |+
T Consensus 126 V~~~~g~~----------------~~~~i~~~~~-~-g~~v~~--~v~t~~~a~~a~~~GaD~i~v~g~ 174 (369)
T 3bw2_A 126 VSFHFGVP----------------DREVIARLRR-A-GTLTLV--TATTPEEARAVEAAGADAVIAQGV 174 (369)
T ss_dssp EEEESSCC----------------CHHHHHHHHH-T-TCEEEE--EESSHHHHHHHHHTTCSEEEEECT
T ss_pred EEEeCCCC----------------cHHHHHHHHH-C-CCeEEE--ECCCHHHHHHHHHcCCCEEEEeCC
Confidence 99986421 1455555544 3 778776 478999999999999999988 53
|
| >2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A* | Back alignment and structure |
|---|
Probab=92.51 E-value=0.47 Score=40.41 Aligned_cols=82 Identities=11% Similarity=0.032 Sum_probs=53.5
Q ss_pred CCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCce-EEE
Q 020423 194 NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLT-FTL 272 (326)
Q Consensus 194 ~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iP-VIa 272 (326)
+.|+..-++.. +.+++.+. ++.+.+.|+++|++...+. ...+.+.++.+.+ ++| +++
T Consensus 6 ~~~i~~~i~~~-----d~~~~~~~-~~~~~~~G~~~i~l~~~~~---------------~~~~~i~~i~~~~-~~~l~vg 63 (212)
T 2v82_A 6 KLPLIAILRGI-----TPDEALAH-VGAVIDAGFDAVEIPLNSP---------------QWEQSIPAIVDAY-GDKALIG 63 (212)
T ss_dssp SSCEEEECTTC-----CHHHHHHH-HHHHHHHTCCEEEEETTST---------------THHHHHHHHHHHH-TTTSEEE
T ss_pred CCCEEEEEeCC-----CHHHHHHH-HHHHHHCCCCEEEEeCCCh---------------hHHHHHHHHHHhC-CCCeEEE
Confidence 45666555442 23444443 3345568999999854321 1245566666554 454 456
Q ss_pred eCCCCCHHHHHHHHHhCCChhhhhH
Q 020423 273 NGGINTVDEVNAALRKGAHHVMVGR 297 (326)
Q Consensus 273 ~GgI~s~~da~~~l~~GaD~V~iGR 297 (326)
.|++.+.+++..+++.|||+|.++.
T Consensus 64 ~g~~~~~~~i~~a~~~Gad~V~~~~ 88 (212)
T 2v82_A 64 AGTVLKPEQVDALARMGCQLIVTPN 88 (212)
T ss_dssp EECCCSHHHHHHHHHTTCCEEECSS
T ss_pred eccccCHHHHHHHHHcCCCEEEeCC
Confidence 7899999999999999999998764
|
| >1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, J protein structure initiative, joint center for structural G lyase; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 3pb2_A 3pb0_A | Back alignment and structure |
|---|
Probab=92.50 E-value=3.4 Score=37.44 Aligned_cols=125 Identities=12% Similarity=0.092 Sum_probs=75.1
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC--CCcEEEEeccCCCCCccHH
Q 020423 135 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYN 212 (326)
Q Consensus 135 ~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~--~~pv~vK~r~g~~~~~~~~ 212 (326)
|.+.+.+.+++..+.|.|++-++.. +++ +.+| ..+.-.++++.+++.+ ..||.+.+... +..
T Consensus 31 D~~~l~~lv~~li~~Gv~gl~v~Gt--------TGE-~~~L--s~eEr~~vi~~~~~~~~grvpViaGvg~~-----st~ 94 (306)
T 1o5k_A 31 DLESYERLVRYQLENGVNALIVLGT--------TGE-SPTV--NEDEREKLVSRTLEIVDGKIPVIVGAGTN-----STE 94 (306)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEESSG--------GGT-GGGC--CHHHHHHHHHHHHHHHTTSSCEEEECCCS-----CHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCcc--------ccc-hhhC--CHHHHHHHHHHHHHHhCCCCeEEEcCCCc-----cHH
Confidence 6788999999999999999999642 233 2222 2333344444444433 47888765432 344
Q ss_pred HHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEE-e-----CCCCCHHHHHHHH
Q 020423 213 QLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTL-N-----GGINTVDEVNAAL 286 (326)
Q Consensus 213 e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa-~-----GgI~s~~da~~~l 286 (326)
+.++ .++..++.|+|.+-+.... +...+ ...-++++.++.+. .++||+. | |--.+++.+.++.
T Consensus 95 ~ai~-la~~A~~~Gadavlv~~P~--y~~~s-------~~~l~~~f~~va~a-~~lPiilYn~P~~tg~~l~~~~~~~La 163 (306)
T 1o5k_A 95 KTLK-LVKQAEKLGANGVLVVTPY--YNKPT-------QEGLYQHYKYISER-TDLGIVVYNVPGRTGVNVLPETAARIA 163 (306)
T ss_dssp HHHH-HHHHHHHHTCSEEEEECCC--SSCCC-------HHHHHHHHHHHHTT-CSSCEEEEECHHHHSCCCCHHHHHHHH
T ss_pred HHHH-HHHHHHhcCCCEEEECCCC--CCCCC-------HHHHHHHHHHHHHh-CCCCEEEEeCccccCcCCCHHHHHHHH
Confidence 5555 3556678999999886432 11100 01124455666655 4899866 3 4445888888776
|
| >1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1 | Back alignment and structure |
|---|
Probab=92.45 E-value=0.13 Score=50.07 Aligned_cols=62 Identities=23% Similarity=0.306 Sum_probs=47.7
Q ss_pred HhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhh
Q 020423 221 VSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMV 295 (326)
Q Consensus 221 ~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~i 295 (326)
.+.++|+|.+.++... |. +...++.+.++++.++++||+. |++.+.+++..+.+.|+|+|.+
T Consensus 244 ~l~~aGvd~v~i~~~~----G~--------~~~~~e~i~~i~~~~p~~pvi~-g~~~t~e~a~~l~~~G~d~I~v 305 (494)
T 1vrd_A 244 KLVKAGVDVIVIDTAH----GH--------SRRVIETLEMIKADYPDLPVVA-GNVATPEGTEALIKAGADAVKV 305 (494)
T ss_dssp HHHHTTCSEEEECCSC----CS--------SHHHHHHHHHHHHHCTTSCEEE-EEECSHHHHHHHHHTTCSEEEE
T ss_pred HHHHhCCCEEEEEecC----Cc--------hHHHHHHHHHHHHHCCCceEEe-CCcCCHHHHHHHHHcCCCEEEE
Confidence 4456999999997532 11 1123677888887776899877 6788999999999999999988
|
| >3v5c_A Mandelate racemase/muconate lactonizing protein; enolase fold, galacturonate dehydratase, double Mg site, LYA; 1.53A {Paenibacillus SP} PDB: 3v5f_A* 3p3b_A* 3ops_A* 3n4f_A* 3qpe_A* | Back alignment and structure |
|---|
Probab=92.43 E-value=1.1 Score=42.33 Aligned_cols=129 Identities=8% Similarity=-0.033 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC--CCcEEEEeccCCCCCccHHH
Q 020423 136 LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYNQ 213 (326)
Q Consensus 136 ~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~--~~pv~vK~r~g~~~~~~~~e 213 (326)
++++.+.|+.+.+.||..+-+..|.+.... +. ...++.-.+.+++||+++ +.++.+-...+| +.++
T Consensus 149 ~e~~~~~a~~~~~~Gf~~~KlKvg~~~~~~---~~-----~~~~~~d~~~v~avR~a~g~~~~l~vDaN~~w----~~~~ 216 (392)
T 3v5c_A 149 VALMQEEAMQGYAKGQRHFKIKVGRGGRHM---PL-----WEGTKRDIAIVRGISEVAGPAGKIMIDANNAY----NLNL 216 (392)
T ss_dssp HHHHHHHHHHHHHTTCCCEEEECCTTTTTS---CH-----HHHHHHHHHHHHHHHHHHCTTCCEEEECTTCC----CHHH
T ss_pred HHHHHHHHHHHHHCCCCEEEECCCCCCccc---cc-----cccHHHHHHHHHHHHHHcCCCCcEEeeCCCCc----CHHH
Confidence 467778888888899999999887432110 00 012455677888898876 455655544444 3445
Q ss_pred HHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhc----CCCceEEEeCCCCCHHHHHHHHHhC
Q 020423 214 LCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRD----FPDLTFTLNGGINTVDEVNAALRKG 289 (326)
Q Consensus 214 ~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~----~~~iPVIa~GgI~s~~da~~~l~~G 289 (326)
..+ +.+.+++.++.+|. . + .+ .+++.+.++.+. ...+||...=.+. ..++.++++.|
T Consensus 217 A~~-~~~~L~~~~l~~iE----e-----------P-~~-~d~~~~~~l~~~~~~~~~~ipIa~gE~~~-~~~~~~li~~~ 277 (392)
T 3v5c_A 217 TKE-VLAALSDVNLYWLE----A-----------A-FH-EDEALYEDLKEWLGQRGQNVLIADGEGLA-SPHLIEWATRG 277 (392)
T ss_dssp HHH-HHHHTTTSCCCEEE----C-----------S-SS-CCHHHHHHHHHHHHHHTCCCEEEECCSSC-CTTHHHHHHTT
T ss_pred HHH-HHHhcccCCCeEEe----C-----------C-CC-cCHHHHHHHHHhhccCCCCCcEECCCccc-HHHHHHHHHcC
Confidence 555 35567778887774 1 0 11 134445555442 1367765544555 66677777755
Q ss_pred -CChhhh
Q 020423 290 -AHHVMV 295 (326)
Q Consensus 290 -aD~V~i 295 (326)
+|.|++
T Consensus 278 a~dii~~ 284 (392)
T 3v5c_A 278 RVDVLQY 284 (392)
T ss_dssp SCCEECC
T ss_pred CCcEEEe
Confidence 777665
|
| >3qw4_B UMP synthase; N-terminal orotidine monophosphate decarboxylase domain C-TE orotate phosphoribosyltransferase domain, transferase, LYAS; HET: U5P; 3.00A {Leishmania donovani} | Back alignment and structure |
|---|
Probab=92.38 E-value=3.4 Score=39.73 Aligned_cols=141 Identities=15% Similarity=0.136 Sum_probs=78.7
Q ss_pred CCCcEEEEec-CCCHHHHHHHHHHHH-HCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEE
Q 020423 123 EQHPIVLQIG-GSNLDNLAKATELAN-AYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVK 200 (326)
Q Consensus 123 ~~~piivQL~-g~~~~~f~~aA~~a~-~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK 200 (326)
.+.++++-+- |.-+.....+++.+. ++|+|.|.+|. ||| . +.++...+..+.-++|=
T Consensus 76 ~g~~VflDlK~~DIpnT~~~~a~~~~~~lg~d~vTvh~------------~~G-----~----~~l~~~~~~~~~~v~vL 134 (453)
T 3qw4_B 76 AGIPVVLDAKRGDIADTADAYATSAFKHLNAHAITASP------------YMG-----S----DSLQPFMRYPDKAVFVL 134 (453)
T ss_dssp TTSCBEEEEEECCCHHHHHHHHHHHHTTSCCSEEEECS------------TTC-----H----HHHHHHHTCTTSEEEEE
T ss_pred CCCeEEEEeecCChHHHHHHHHHHHHHHcCCCEEEEcc------------cCC-----H----HHHHHHHHhhCCcEEEE
Confidence 4778888875 444556666666655 49999999984 343 1 23444433334444444
Q ss_pred eccCCC------CC----ccHH-HHHHHHHH-HhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCc
Q 020423 201 CRIGVD------DH----DSYN-QLCDFIYK-VSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDL 268 (326)
Q Consensus 201 ~r~g~~------~~----~~~~-e~~~~ia~-~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~i 268 (326)
.+.+.+ +. .++. ...+ .++ ...+.|.|.+.+++.. -+.+..+++..++.
T Consensus 135 ~~tS~~~~~~lq~~~~~~~~~~~~V~~-~a~~~~~~~g~~GvV~gat~------------------~~e~~~ir~~~~~~ 195 (453)
T 3qw4_B 135 CKTSNKGSNDLQCLRVGDRYLYEAVAE-RAEGPWNVNGNVGLVVGATD------------------PVALARVRARAPTL 195 (453)
T ss_dssp EECSSGGGGGTTTSEETTEEHHHHHHH-HHTTTTCTTSCEEEEECTTC------------------HHHHHHHHHHCSSC
T ss_pred EeCCCcchHHHHhcccCCCCHHHHHHH-HHHHHHhhcCCeEEEECCCC------------------HHHHHHHHHhCCCC
Confidence 333221 10 1222 2222 222 3335788888775421 12344555555566
Q ss_pred eEEEeCCCCC-HHHHHHHHHhCCCh------hhhhHHHHhCCc
Q 020423 269 TFTLNGGINT-VDEVNAALRKGAHH------VMVGRAAYQNPW 304 (326)
Q Consensus 269 PVIa~GgI~s-~~da~~~l~~GaD~------V~iGRall~dP~ 304 (326)
+++. =||.. ..+..++++.|+|. +.+||+++.-++
T Consensus 196 ~~l~-PGig~qg~tp~~a~~~g~d~~~~~~livvgR~I~~A~d 237 (453)
T 3qw4_B 196 WFLV-PGIGAQGGSLKASLDAGLRADGSGMLINVSRGLARAAD 237 (453)
T ss_dssp CEEE-CCSSTTCCCHHHHHHHHCCTTSCCEEEEESHHHHSCSC
T ss_pred eEEE-CCcCCCCCCHHHHHHhcCCcccCCceEecChhhccCCC
Confidence 6554 33321 12455677788888 999999997555
|
| >3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A {Mycobacterium gastri} | Back alignment and structure |
|---|
Probab=92.31 E-value=0.58 Score=39.56 Aligned_cols=128 Identities=9% Similarity=-0.017 Sum_probs=71.6
Q ss_pred EEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC-CCcEEEEeccCC
Q 020423 127 IVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCRIGV 205 (326)
Q Consensus 127 iivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~-~~pv~vK~r~g~ 205 (326)
+++-+-..+.++..+.++.+.+ |+|.+|+..+. +. .+| .++++++|+.. +.|+.+-+-..
T Consensus 3 li~a~d~~~~~~~~~~~~~~~~-~v~~iev~~~~----~~---~~g----------~~~i~~l~~~~~~~~i~~~l~~~- 63 (207)
T 3ajx_A 3 LQVAIDLLSTEAALELAGKVAE-YVDIIELGTPL----IK---AEG----------LSVITAVKKAHPDKIVFADMKTM- 63 (207)
T ss_dssp EEEEECCSCHHHHHHHHHHHGG-GCSEEEECHHH----HH---HHC----------THHHHHHHHHSTTSEEEEEEEEC-
T ss_pred EEEEeCCCCHHHHHHHHHHhhc-cCCEEEECcHH----HH---hhC----------HHHHHHHHHhCCCCeEEEEEEec-
Confidence 4555555677877888887777 88999995421 11 123 24567777776 77887633332
Q ss_pred CCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceE-EEeCCCCCHHH-HH
Q 020423 206 DDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTF-TLNGGINTVDE-VN 283 (326)
Q Consensus 206 ~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPV-Ia~GgI~s~~d-a~ 283 (326)
+. .+.. .+.+.++|+|++++|.... ......+.+..++. ++++ +..-...++++ +.
T Consensus 64 -di--~~~~----~~~a~~~Gad~v~vh~~~~--------------~~~~~~~~~~~~~~-g~~~gv~~~s~~~p~~~~~ 121 (207)
T 3ajx_A 64 -DA--GELE----ADIAFKAGADLVTVLGSAD--------------DSTIAGAVKAAQAH-NKGVVVDLIGIEDKATRAQ 121 (207)
T ss_dssp -SC--HHHH----HHHHHHTTCSEEEEETTSC--------------HHHHHHHHHHHHHH-TCEEEEECTTCSSHHHHHH
T ss_pred -Cc--cHHH----HHHHHhCCCCEEEEeccCC--------------hHHHHHHHHHHHHc-CCceEEEEecCCChHHHHH
Confidence 21 1221 2234469999999996421 00122232333332 4554 21223447766 55
Q ss_pred HHHHhCCChhhh
Q 020423 284 AALRKGAHHVMV 295 (326)
Q Consensus 284 ~~l~~GaD~V~i 295 (326)
++.+.|+|.|.+
T Consensus 122 ~~~~~g~d~v~~ 133 (207)
T 3ajx_A 122 EVRALGAKFVEM 133 (207)
T ss_dssp HHHHTTCSEEEE
T ss_pred HHHHhCCCEEEE
Confidence 555679999833
|
| >3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A* 3tdf_A 3u8g_A 3uqn_A 4dxv_A | Back alignment and structure |
|---|
Probab=92.29 E-value=5.7 Score=35.62 Aligned_cols=136 Identities=15% Similarity=0.132 Sum_probs=81.6
Q ss_pred CCCcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEec
Q 020423 123 EQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCR 202 (326)
Q Consensus 123 ~~~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r 202 (326)
...|+++...+.+.++-.+.++.++++|+|++-+- .|.-. . ...+-+.+-.++|.++++.|+.+=--
T Consensus 69 gr~pviaGvg~~~t~~ai~la~~a~~~Gadavlv~--~P~y~-~----------~~~~~l~~~f~~ia~a~~lPiilYn~ 135 (291)
T 3tak_A 69 KRIPIIAGTGANSTREAIELTKAAKDLGADAALLV--TPYYN-K----------PTQEGLYQHYKAIAEAVELPLILYNV 135 (291)
T ss_dssp TSSCEEEECCCSSHHHHHHHHHHHHHHTCSEEEEE--CCCSS-C----------CCHHHHHHHHHHHHHHCCSCEEEEEC
T ss_pred CCCeEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEc--CCCCC-C----------CCHHHHHHHHHHHHHhcCCCEEEEec
Confidence 45799999998899999999999999999999885 34321 1 12456777888888888999987532
Q ss_pred ---cCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcC-CCceEEEeCCCCC
Q 020423 203 ---IGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF-PDLTFTLNGGINT 278 (326)
Q Consensus 203 ---~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~-~~iPVIa~GgI~s 278 (326)
.|.+- +.+. +.++.+.-.+-.|--+.+ ++..+.++++.. .++.| .+|.
T Consensus 136 P~~tg~~l--~~~~----~~~La~~pnivgiK~ssg------------------d~~~~~~~~~~~~~~f~v-~~G~--- 187 (291)
T 3tak_A 136 PGRTGVDL--SNDT----AVRLAEIPNIVGIKDATG------------------DVPRGKALIDALNGKMAV-YSGD--- 187 (291)
T ss_dssp HHHHSCCC--CHHH----HHHHTTSTTEEEEEECSC------------------CHHHHHHHHHHHTTSSEE-EECC---
T ss_pred ccccCCCC--CHHH----HHHHHcCCCEEEEEeCCC------------------CHHHHHHHHHHcCCCeEE-EECc---
Confidence 22221 2222 233332223433332211 233344444332 24444 4554
Q ss_pred HHHHHHHHHhCCChhhhhHHH
Q 020423 279 VDEVNAALRKGAHHVMVGRAA 299 (326)
Q Consensus 279 ~~da~~~l~~GaD~V~iGRal 299 (326)
-+.+...+..|++++..+.+-
T Consensus 188 d~~~~~~l~~G~~G~is~~~n 208 (291)
T 3tak_A 188 DETAWELMLLGADGNISVTAN 208 (291)
T ss_dssp HHHHHHHHHTTCCEEEESGGG
T ss_pred HHHHHHHHHCCCCEEEechhh
Confidence 344556677888888766543
|
| >1m5w_A Pyridoxal phosphate biosynthetic protein PDXJ; TIM barrel, protein-substrate complex, multi-binding states; HET: DXP; 1.96A {Escherichia coli} SCOP: c.1.24.1 PDB: 1ho1_A 1ho4_A* 1ixn_A* 1ixo_A* 1ixp_A 1ixq_A 3f4n_A* | Back alignment and structure |
|---|
Probab=92.27 E-value=0.47 Score=41.54 Aligned_cols=149 Identities=15% Similarity=0.108 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHHCCCCEEEecCC----------------------------------------------CCCCcccCCCC
Q 020423 137 DNLAKATELANAYNYDEINLNCG----------------------------------------------CPSPKVAGHGC 170 (326)
Q Consensus 137 ~~f~~aA~~a~~aG~d~Iein~g----------------------------------------------~P~~~~~r~d~ 170 (326)
.+..++|..++++|+|+|.+|.- -|......+-+
T Consensus 25 Pdpv~aA~~ae~aGAdgITvHlReDrRHI~d~Dv~~L~~~~~~~lNlE~a~t~emi~ia~~~kP~~vtLVPE~r~e~TTe 104 (243)
T 1m5w_A 25 PDPVQAAFIAEQAGADGITVHLREDRRHITDRDVRILRQTLDTRMNLEMAVTEEMLAIAVETKPHFCCLVPEKRQEVTTE 104 (243)
T ss_dssp SCHHHHHHHHHTTTCSEEEEECCTTCSSSCHHHHHHHHHHCSSEEEEEECSSHHHHHHHHHHCCSEEEECCCCSSCSSCC
T ss_pred CCHHHHHHHHHHcCCCEEEeCCCCCcccCCHHHHHHHHHhcCCCEEeccCCCHHHHHHHHHcCCCEEEECCCCCCCcCCC
Confidence 44678888999999999999753 13222233444
Q ss_pred ccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCC
Q 020423 171 FGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 250 (326)
Q Consensus 171 yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~ 250 (326)
.|-++..+.+++.++++.+++ .|+.+++-+-+. .+. ++ ...+.|+|.|.+|.+...... ...+
T Consensus 105 gGldv~~~~~~l~~~i~~L~~-~GIrVSLFIDpd------~~q-i~----aA~~~GA~~IELhTG~Ya~a~-~~~~---- 167 (243)
T 1m5w_A 105 GGLDVAGQRDKMRDACKRLAD-AGIQVSLFIDAD------EEQ-IK----AAAEVGAPFIEIHTGCYADAK-TDAE---- 167 (243)
T ss_dssp SCCCSGGGHHHHHHHHHHHHH-TTCEEEEEECSC------HHH-HH----HHHHTTCSEEEEECHHHHHCC-SHHH----
T ss_pred cchhHHhhHHHHHHHHHHHHH-CCCEEEEEeCCC------HHH-HH----HHHHhCcCEEEEechhhhcCC-Cchh----
Confidence 477788889999999999965 478888765542 222 12 224689999999975421000 0000
Q ss_pred CCccHHHHHH---HHhcCCCceEEEeCCCCCHHHHHHHHH-hCCChhhhhHHHHhCCc
Q 020423 251 PPLKYEYYYA---LLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQNPW 304 (326)
Q Consensus 251 ~~~~~~~i~~---i~~~~~~iPVIa~GgI~s~~da~~~l~-~GaD~V~iGRall~dP~ 304 (326)
...-++.+.+ ...+ ..+-|=+.-|+ +.+.+..+.. -+..=|.||.+++++--
T Consensus 168 ~~~el~~i~~aa~~A~~-lGL~VnAGHgL-~y~Nv~~ia~ip~i~ElnIGHaiia~Al 223 (243)
T 1m5w_A 168 QAQELARIAKAATFAAS-LGLKVNAGHGL-TYHNVKAIAAIPEMHELNIGHAIIGRAV 223 (243)
T ss_dssp HHHHHHHHHHHHHHHHH-TTCEEEEESSC-CTTTHHHHHTCTTEEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-cCCEEecCCCC-CHHHHHHHhhCCCCeEEccCHHHHHHHH
Confidence 0001222222 2223 36777777777 4555555544 56777888888876643
|
| >2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=92.24 E-value=4.5 Score=36.33 Aligned_cols=125 Identities=11% Similarity=0.068 Sum_probs=75.5
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC--CCcEEEEeccCCCCCccHH
Q 020423 135 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYN 212 (326)
Q Consensus 135 ~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~--~~pv~vK~r~g~~~~~~~~ 212 (326)
|.+.+.+.+++..+.|.|++-++.. +++ +.+| ..+.-.++++.+++.+ ..||.+.+.. .+..
T Consensus 19 D~~~l~~lv~~li~~Gv~gl~~~Gt--------tGE-~~~L--s~~Er~~v~~~~~~~~~grvpviaGvg~-----~~t~ 82 (294)
T 2ehh_A 19 DYEALGNLIEFHVDNGTDAILVCGT--------TGE-SPTL--TFEEHEKVIEFAVKRAAGRIKVIAGTGG-----NATH 82 (294)
T ss_dssp CHHHHHHHHHHHHTTTCCEEEESST--------TTT-GGGS--CHHHHHHHHHHHHHHHTTSSEEEEECCC-----SCHH
T ss_pred CHHHHHHHHHHHHHCCCCEEEECcc--------ccC-hhhC--CHHHHHHHHHHHHHHhCCCCcEEEecCC-----CCHH
Confidence 6788999999999999999999642 233 2222 2333344445444433 4788776443 2344
Q ss_pred HHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEE-e-----CCCCCHHHHHHHH
Q 020423 213 QLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTL-N-----GGINTVDEVNAAL 286 (326)
Q Consensus 213 e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa-~-----GgI~s~~da~~~l 286 (326)
+.++ .++..++.|+|.+-+.... +...+ ...-++++.++.+.. ++||+. | |---+++.+.++.
T Consensus 83 ~ai~-la~~A~~~Gadavlv~~P~--y~~~s-------~~~l~~~f~~va~a~-~lPiilYn~P~~tg~~l~~~~~~~La 151 (294)
T 2ehh_A 83 EAVH-LTAHAKEVGADGALVVVPY--YNKPT-------QRGLYEHFKTVAQEV-DIPIIIYNIPSRTCVEISVDTMFKLA 151 (294)
T ss_dssp HHHH-HHHHHHHTTCSEEEEECCC--SSCCC-------HHHHHHHHHHHHHHC-CSCEEEEECHHHHSCCCCHHHHHHHH
T ss_pred HHHH-HHHHHHhcCCCEEEECCCC--CCCCC-------HHHHHHHHHHHHHhc-CCCEEEEeCCcccCcCCCHHHHHHHH
Confidence 5555 3556678999999886432 11100 011245566666654 899866 3 5446888888876
|
| >3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A | Back alignment and structure |
|---|
Probab=92.21 E-value=1.9 Score=39.10 Aligned_cols=126 Identities=9% Similarity=-0.011 Sum_probs=74.2
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC--CCcEEEEeccCCCCCccHH
Q 020423 135 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYN 212 (326)
Q Consensus 135 ~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~--~~pv~vK~r~g~~~~~~~~ 212 (326)
+.+.+.+.+++..+.|.|+|-++.. +++ +.+| ..+.-.++++.+.+.+ ..||.+.+.. .+..
T Consensus 34 D~~~l~~lv~~li~~Gv~gi~v~Gt--------tGE-~~~L--t~~Er~~v~~~~~~~~~grvpviaGvg~-----~~t~ 97 (304)
T 3l21_A 34 DTATAARLANHLVDQGCDGLVVSGT--------TGE-SPTT--TDGEKIELLRAVLEAVGDRARVIAGAGT-----YDTA 97 (304)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEESST--------TTT-GGGS--CHHHHHHHHHHHHHHHTTTSEEEEECCC-----SCHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCcc--------ccc-hhhC--CHHHHHHHHHHHHHHhCCCCeEEEeCCC-----CCHH
Confidence 6788999999999999999988652 233 2222 2333344455544443 4688886433 2345
Q ss_pred HHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEe------CCCCCHHHHHHHH
Q 020423 213 QLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLN------GGINTVDEVNAAL 286 (326)
Q Consensus 213 e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~------GgI~s~~da~~~l 286 (326)
+.++ .++..++.|+|.+-+.... +...+ ...-++++.++.+.. ++||+.= |---+++.+.++.
T Consensus 98 ~ai~-la~~a~~~Gadavlv~~P~--y~~~s-------~~~l~~~f~~va~a~-~lPiilYn~P~~tg~~l~~~~~~~La 166 (304)
T 3l21_A 98 HSIR-LAKACAAEGAHGLLVVTPY--YSKPP-------QRGLQAHFTAVADAT-ELPMLLYDIPGRSAVPIEPDTIRALA 166 (304)
T ss_dssp HHHH-HHHHHHHHTCSEEEEECCC--SSCCC-------HHHHHHHHHHHHTSC-SSCEEEEECHHHHSSCCCHHHHHHHH
T ss_pred HHHH-HHHHHHHcCCCEEEECCCC--CCCCC-------HHHHHHHHHHHHHhc-CCCEEEEeCccccCCCCCHHHHHHHh
Confidence 5555 3556678999999887432 11100 011244555665554 8887642 5555777776665
Q ss_pred H
Q 020423 287 R 287 (326)
Q Consensus 287 ~ 287 (326)
+
T Consensus 167 ~ 167 (304)
T 3l21_A 167 S 167 (304)
T ss_dssp T
T ss_pred c
Confidence 3
|
| >3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A* | Back alignment and structure |
|---|
Probab=92.20 E-value=0.44 Score=41.67 Aligned_cols=85 Identities=13% Similarity=0.133 Sum_probs=55.8
Q ss_pred EEEEecCCCHHHHHHHHHHHHHCCCCEEEe--cCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccC
Q 020423 127 IVLQIGGSNLDNLAKATELANAYNYDEINL--NCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIG 204 (326)
Q Consensus 127 iivQL~g~~~~~f~~aA~~a~~aG~d~Iei--n~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g 204 (326)
+..+|...+..++.++.+.+ ++|+|.+.+ --|.-.++ . .|| .++++++|+.++.|+.+-+-..
T Consensus 3 i~pSila~D~~~l~~~i~~~-~~gad~lHvDvmDG~fvpn-~---t~G----------~~~v~~lr~~~~~~~dvhLmv~ 67 (231)
T 3ctl_A 3 ISPSLMCMDLLKFKEQIEFI-DSHADYFHIDIMDGHFVPN-L---TLS----------PFFVSQVKKLATKPLDCHLMVT 67 (231)
T ss_dssp EEEBGGGSCGGGHHHHHHHH-HTTCSCEEEEEECSSSSSC-C---CBC----------HHHHHHHHTTCCSCEEEEEESS
T ss_pred EEeehhhCChhhHHHHHHHH-HcCCCEEEEEEEeCccCcc-c---hhc----------HHHHHHHHhccCCcEEEEEEec
Confidence 45667777778888999999 999997544 33431221 1 255 3478888887788888876663
Q ss_pred CCCCccHHHHHHHHHHHhhhCCccEEEEecC
Q 020423 205 VDDHDSYNQLCDFIYKVSSLSPTRHFIIHSR 235 (326)
Q Consensus 205 ~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~ 235 (326)
+.+.+ + +.+.++|+|++++|..
T Consensus 68 --dp~~~------i-~~~~~aGAd~itvh~E 89 (231)
T 3ctl_A 68 --RPQDY------I-AQLARAGADFITLHPE 89 (231)
T ss_dssp --CGGGT------H-HHHHHHTCSEEEECGG
T ss_pred --CHHHH------H-HHHHHcCCCEEEECcc
Confidence 22221 1 2234689999999963
|
| >2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics, oxidoreductase, flavoprotein; HET: FMN; 1.70A {Streptococcus pneumoniae} PDB: 2z6j_A* | Back alignment and structure |
|---|
Probab=92.11 E-value=0.96 Score=41.52 Aligned_cols=90 Identities=11% Similarity=0.094 Sum_probs=61.7
Q ss_pred CHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHH
Q 020423 178 DPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEY 257 (326)
Q Consensus 178 r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~ 257 (326)
.++.+.+.++.+++.++.|+.+.+-... ..+.+. .+.+.+.|+|.|++|++.. .+.
T Consensus 47 ~~~~~~~~i~~i~~~~~~p~gvnl~~~~---~~~~~~----~~~a~~~g~d~V~~~~g~p-----------------~~~ 102 (332)
T 2z6i_A 47 PKEVVKANIDKIKSLTDKPFGVNIMLLS---PFVEDI----VDLVIEEGVKVVTTGAGNP-----------------SKY 102 (332)
T ss_dssp CHHHHHHHHHHHHHHCCSCEEEEECTTS---TTHHHH----HHHHHHTTCSEEEECSSCG-----------------GGT
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEecCCC---CCHHHH----HHHHHHCCCCEEEECCCCh-----------------HHH
Confidence 4677788888888877888888765421 123333 2344568999999987421 122
Q ss_pred HHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhh
Q 020423 258 YYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMV 295 (326)
Q Consensus 258 i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~i 295 (326)
+..++ +. ++||+. .+.+.+++..+.+.|+|+|.+
T Consensus 103 i~~l~-~~-g~~v~~--~v~~~~~a~~~~~~GaD~i~v 136 (332)
T 2z6i_A 103 MERFH-EA-GIIVIP--VVPSVALAKRMEKIGADAVIA 136 (332)
T ss_dssp HHHHH-HT-TCEEEE--EESSHHHHHHHHHTTCSCEEE
T ss_pred HHHHH-Hc-CCeEEE--EeCCHHHHHHHHHcCCCEEEE
Confidence 33343 33 788885 378999999998999999988
|
| >2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A | Back alignment and structure |
|---|
Probab=92.10 E-value=3.5 Score=37.05 Aligned_cols=126 Identities=15% Similarity=0.068 Sum_probs=75.4
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC--CCcEEEEeccCCCCCccHH
Q 020423 135 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYN 212 (326)
Q Consensus 135 ~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~--~~pv~vK~r~g~~~~~~~~ 212 (326)
|.+.+.+.+++..+.|.|++-++.. +++ +.+| ..+.-.++++.+.+.+ ..||.+.+.. .+..
T Consensus 20 D~~~l~~lv~~li~~Gv~gl~~~Gt--------tGE-~~~L--s~~Er~~v~~~~~~~~~gr~pviaGvg~-----~~t~ 83 (292)
T 2ojp_A 20 CRASLKKLIDYHVASGTSAIVSVGT--------TGE-SATL--NHDEHADVVMMTLDLADGRIPVIAGTGA-----NATA 83 (292)
T ss_dssp CHHHHHHHHHHHHHHTCCEEEESST--------TTT-GGGS--CHHHHHHHHHHHHHHHTTSSCEEEECCC-----SSHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEECcc--------ccc-hhhC--CHHHHHHHHHHHHHHhCCCCcEEEecCC-----ccHH
Confidence 6788999999999999999999652 233 2222 2333344444444433 4788876433 2345
Q ss_pred HHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEE-e-----CCCCCHHHHHHHH
Q 020423 213 QLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTL-N-----GGINTVDEVNAAL 286 (326)
Q Consensus 213 e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa-~-----GgI~s~~da~~~l 286 (326)
+.++ .++..++.|+|.+-+.... +...+ ...-++++.++.+. .++||+. | |--.+++.+.++.
T Consensus 84 ~ai~-la~~a~~~Gadavlv~~P~--y~~~s-------~~~l~~~f~~ia~a-~~lPiilYn~P~~tg~~l~~~~~~~La 152 (292)
T 2ojp_A 84 EAIS-LTQRFNDSGIVGCLTVTPY--YNRPS-------QEGLYQHFKAIAEH-TDLPQILYNVPSRTGCDLLPETVGRLA 152 (292)
T ss_dssp HHHH-HHHHTTTSSCSEEEEECCC--SSCCC-------HHHHHHHHHHHHTT-CSSCEEEECCHHHHSCCCCHHHHHHHH
T ss_pred HHHH-HHHHHHhcCCCEEEECCCC--CCCCC-------HHHHHHHHHHHHHh-cCCCEEEEeCcchhccCCCHHHHHHHH
Confidence 5555 4556788999999886432 11100 01124455666655 4899866 3 4445888877775
Q ss_pred H
Q 020423 287 R 287 (326)
Q Consensus 287 ~ 287 (326)
+
T Consensus 153 ~ 153 (292)
T 2ojp_A 153 K 153 (292)
T ss_dssp T
T ss_pred c
Confidence 4
|
| >2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661} | Back alignment and structure |
|---|
Probab=92.09 E-value=4 Score=36.60 Aligned_cols=125 Identities=10% Similarity=0.018 Sum_probs=75.3
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC--CCcEEEEeccCCCCCccHH
Q 020423 135 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYN 212 (326)
Q Consensus 135 ~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~--~~pv~vK~r~g~~~~~~~~ 212 (326)
|.+.+.+.+++..+.|.|++-++.. +++ +.+| ..+.-.++++.+.+.+ ..||.+.+.. .+..
T Consensus 19 D~~~l~~lv~~li~~Gv~gl~~~Gt--------tGE-~~~L--s~~Er~~v~~~~~~~~~gr~pviaGvg~-----~~t~ 82 (289)
T 2yxg_A 19 DFDGLEENINFLIENGVSGIVAVGT--------TGE-SPTL--SHEEHKKVIEKVVDVVNGRVQVIAGAGS-----NCTE 82 (289)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEESST--------TTT-GGGS--CHHHHHHHHHHHHHHHTTSSEEEEECCC-----SSHH
T ss_pred CHHHHHHHHHHHHHCCCCEEEECcc--------ccC-hhhC--CHHHHHHHHHHHHHHhCCCCcEEEeCCC-----CCHH
Confidence 6788999999999999999999642 233 2222 2333344455444433 4788776443 2344
Q ss_pred HHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEE-e-----CCCCCHHHHHHHH
Q 020423 213 QLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTL-N-----GGINTVDEVNAAL 286 (326)
Q Consensus 213 e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa-~-----GgI~s~~da~~~l 286 (326)
+.++ .++..++.|+|.+-+.... +...+ ...-++++.++.+.. ++||+. | |--.+++.+.++.
T Consensus 83 ~ai~-la~~a~~~Gadavlv~~P~--y~~~s-------~~~l~~~f~~ia~a~-~lPiilYn~P~~tg~~l~~~~~~~La 151 (289)
T 2yxg_A 83 EAIE-LSVFAEDVGADAVLSITPY--YNKPT-------QEGLRKHFGKVAESI-NLPIVLYNVPSRTAVNLEPKTVKLLA 151 (289)
T ss_dssp HHHH-HHHHHHHHTCSEEEEECCC--SSCCC-------HHHHHHHHHHHHHHC-SSCEEEEECHHHHSCCCCHHHHHHHH
T ss_pred HHHH-HHHHHHhcCCCEEEECCCC--CCCCC-------HHHHHHHHHHHHHhc-CCCEEEEeCccccCcCCCHHHHHHHH
Confidence 5555 3556678999999886432 11100 011245566666654 889766 3 5446888888776
|
| >3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0 | Back alignment and structure |
|---|
Probab=92.07 E-value=2.8 Score=37.86 Aligned_cols=126 Identities=10% Similarity=0.038 Sum_probs=76.1
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC--CCcEEEEeccCCCCCccHH
Q 020423 135 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYN 212 (326)
Q Consensus 135 ~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~--~~pv~vK~r~g~~~~~~~~ 212 (326)
+.+.+.+.+++..+.|.|++-++.. +++ +.+| ..+.-.++++.+.+.+ ..||.+.+.. .+..
T Consensus 26 D~~~l~~lv~~li~~Gv~gl~~~Gt--------tGE-~~~L--s~~Er~~v~~~~~~~~~grvpviaGvg~-----~~t~ 89 (297)
T 3flu_A 26 HYEQLRDLIDWHIENGTDGIVAVGT--------TGE-SATL--SVEEHTAVIEAVVKHVAKRVPVIAGTGA-----NNTV 89 (297)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEESST--------TTT-GGGS--CHHHHHHHHHHHHHHHTTSSCEEEECCC-----SSHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCcc--------ccC-cccC--CHHHHHHHHHHHHHHhCCCCcEEEeCCC-----cCHH
Confidence 6788999999999999999999753 233 2222 2333344444444433 4788886433 2345
Q ss_pred HHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEe------CCCCCHHHHHHHH
Q 020423 213 QLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLN------GGINTVDEVNAAL 286 (326)
Q Consensus 213 e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~------GgI~s~~da~~~l 286 (326)
+.++ .++..++.|+|.+-+.... +...+ ...-++++.++.+.. ++||+.= |---+++.+.++.
T Consensus 90 ~ai~-la~~a~~~Gadavlv~~P~--y~~~~-------~~~l~~~f~~va~a~-~lPiilYn~P~~tg~~l~~~~~~~La 158 (297)
T 3flu_A 90 EAIA-LSQAAEKAGADYTLSVVPY--YNKPS-------QEGIYQHFKTIAEAT-SIPMIIYNVPGRTVVSMTNDTILRLA 158 (297)
T ss_dssp HHHH-HHHHHHHTTCSEEEEECCC--SSCCC-------HHHHHHHHHHHHHHC-CSCEEEEECHHHHSSCCCHHHHHHHT
T ss_pred HHHH-HHHHHHHcCCCEEEECCCC--CCCCC-------HHHHHHHHHHHHHhC-CCCEEEEECCchhccCCCHHHHHHHH
Confidence 5555 3556678999999886432 11100 011245666666665 8998652 5556788777765
Q ss_pred H
Q 020423 287 R 287 (326)
Q Consensus 287 ~ 287 (326)
+
T Consensus 159 ~ 159 (297)
T 3flu_A 159 E 159 (297)
T ss_dssp T
T ss_pred c
Confidence 4
|
| >2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium tumefac C58, structural genomics, PSI-2; HET: MSE; 1.80A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=92.04 E-value=7.2 Score=35.74 Aligned_cols=65 Identities=18% Similarity=0.195 Sum_probs=50.9
Q ss_pred CCCcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEE
Q 020423 123 EQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVK 200 (326)
Q Consensus 123 ~~~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK 200 (326)
...|+++...+.+.++-.+.++.++++|+|++-+- .|..+ . ...+-+.+-.++|.++++.|+.+=
T Consensus 102 grvpViaGvg~~st~eai~la~~A~~~Gadavlv~--~P~Y~-~----------~s~~~l~~~f~~VA~a~~lPiilY 166 (332)
T 2r8w_A 102 GRRTLMAGIGALRTDEAVALAKDAEAAGADALLLA--PVSYT-P----------LTQEEAYHHFAAVAGATALPLAIY 166 (332)
T ss_dssp TSSEEEEEECCSSHHHHHHHHHHHHHHTCSEEEEC--CCCSS-C----------CCHHHHHHHHHHHHHHCSSCEEEE
T ss_pred CCCcEEEecCCCCHHHHHHHHHHHHhcCCCEEEEC--CCCCC-C----------CCHHHHHHHHHHHHHhcCCCEEEE
Confidence 45789999999899999999999999999999884 34421 1 134667777788888889998874
|
| >3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=92.04 E-value=2.1 Score=38.99 Aligned_cols=124 Identities=14% Similarity=0.070 Sum_probs=74.5
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC--CCcEEEEeccCCCCCccHH
Q 020423 135 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYN 212 (326)
Q Consensus 135 ~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~--~~pv~vK~r~g~~~~~~~~ 212 (326)
|.+.+.+.+++..+.|.|+|-++.. +++ +.+| ..+.-.++++.+.+.+ ..||.+.+.. .++.
T Consensus 43 D~~~l~~lv~~li~~Gv~Gi~v~Gt--------TGE-~~~L--s~~Er~~v~~~~v~~~~grvpViaGvg~-----~~t~ 106 (315)
T 3na8_A 43 DLPALGRSIERLIDGGVHAIAPLGS--------TGE-GAYL--SDPEWDEVVDFTLKTVAHRVPTIVSVSD-----LTTA 106 (315)
T ss_dssp CHHHHHHHHHHHHHTTCSEEECSSG--------GGT-GGGS--CHHHHHHHHHHHHHHHTTSSCBEEECCC-----SSHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEECcc--------ccC-hhhC--CHHHHHHHHHHHHHHhCCCCcEEEecCC-----CCHH
Confidence 6788999999999999999998642 233 2222 2333344455544433 4788886433 2345
Q ss_pred HHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEE-e-----CCCCCHHHHHHH
Q 020423 213 QLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTL-N-----GGINTVDEVNAA 285 (326)
Q Consensus 213 e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa-~-----GgI~s~~da~~~ 285 (326)
+.++ .++..++.|+|.+-+.... +...+ ...-++++.++.+.. ++||+. | |---+++.+.++
T Consensus 107 ~ai~-la~~A~~~Gadavlv~~P~--y~~~s-------~~~l~~~f~~va~a~-~lPiilYn~P~~tg~~l~~~~~~~L 174 (315)
T 3na8_A 107 KTVR-RAQFAESLGAEAVMVLPIS--YWKLN-------EAEVFQHYRAVGEAI-GVPVMLYNNPGTSGIDMSVELILRI 174 (315)
T ss_dssp HHHH-HHHHHHHTTCSEEEECCCC--SSCCC-------HHHHHHHHHHHHHHC-SSCEEEEECHHHHSCCCCHHHHHHH
T ss_pred HHHH-HHHHHHhcCCCEEEECCCC--CCCCC-------HHHHHHHHHHHHHhC-CCcEEEEeCcchhCcCCCHHHHHHH
Confidence 5555 3556678999999886432 11100 011245566666654 788764 2 555577777777
|
| >3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina} | Back alignment and structure |
|---|
Probab=92.00 E-value=0.21 Score=44.76 Aligned_cols=128 Identities=10% Similarity=0.001 Sum_probs=69.3
Q ss_pred HHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCC--cccCCCCcCC------cCCCC-
Q 020423 181 FVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRK--ALLNGISPAE------NRTIP- 251 (326)
Q Consensus 181 ~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~--~~~~g~~~~~------~~~~~- 251 (326)
.+.+..+.+++.-...+..-+..|..+.+ .+.+ +.+.++++|+|.|.+.--. +...|..-.. .....
T Consensus 4 ri~~~f~~~~~~~~~ali~yi~aGdP~~~---~~~~-~~~~l~~~GaD~iElgiPfSDP~aDGp~Iq~a~~~AL~~G~~~ 79 (267)
T 3vnd_A 4 RYQAKFAALKAQDKGAFVPFVTIGDPSPE---LSLK-IIQTLVDNGADALELGFPFSDPLADGPVIQGANLRSLAAGTTS 79 (267)
T ss_dssp HHHHHHHHHHHHTCCEEEEEEETTSSCHH---HHHH-HHHHHHHTTCSSEEEECCCSCCTTCCHHHHHHHHHHHHTTCCH
T ss_pred HHHHHHHHHHhcCCCeEEEEEeCCCCCHH---HHHH-HHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCH
Confidence 35566666666555667777777765433 3444 3445678999999996321 1111100000 00000
Q ss_pred CccHHHHHHHHhcCCCceEEEeCCCCC------HHHHHHHHHhCCChhhhhHHHHhCCchhHHhHHH
Q 020423 252 PLKYEYYYALLRDFPDLTFTLNGGINT------VDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDT 312 (326)
Q Consensus 252 ~~~~~~i~~i~~~~~~iPVIa~GgI~s------~~da~~~l~~GaD~V~iGRall~dP~l~~~~i~~ 312 (326)
...++.++++++..+++||+.-+-.+. .+-+.++.+.|+|+|.+.-.-+.+..-+.+.+++
T Consensus 80 ~~~~~~v~~ir~~~~~~Pivlm~Y~npv~~~g~e~f~~~~~~aGvdgvii~Dlp~ee~~~~~~~~~~ 146 (267)
T 3vnd_A 80 SDCFDIITKVRAQHPDMPIGLLLYANLVFANGIDEFYTKAQAAGVDSVLIADVPVEESAPFSKAAKA 146 (267)
T ss_dssp HHHHHHHHHHHHHCTTCCEEEEECHHHHHHHCHHHHHHHHHHHTCCEEEETTSCGGGCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCEEEEecCcHHHHhhHHHHHHHHHHcCCCEEEeCCCCHhhHHHHHHHHHH
Confidence 011456677766646899988754322 2346666779999998854433333333343333
|
| >3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MC protein structure initiative, midwest center for structural genomics; 1.20A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=91.99 E-value=2.4 Score=38.19 Aligned_cols=126 Identities=13% Similarity=0.117 Sum_probs=78.4
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC--CCcEEEEeccCCCCCccHH
Q 020423 135 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYN 212 (326)
Q Consensus 135 ~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~--~~pv~vK~r~g~~~~~~~~ 212 (326)
|.+.+.+.+++..+.|.|++-++.. +++ +.+ -..+.-.++++.+.+.+ ..||.+.+... +..
T Consensus 22 D~~~l~~lv~~li~~Gv~gl~~~Gt--------tGE-~~~--Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~-----~t~ 85 (294)
T 3b4u_A 22 DIDAMIAHARRCLSNGCDSVTLFGT--------TGE-GCS--VGSRERQAILSSFIAAGIAPSRIVTGVLVD-----SIE 85 (294)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEESST--------TTT-GGG--SCHHHHHHHHHHHHHTTCCGGGEEEEECCS-----SHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEECcc--------ccC-hhh--CCHHHHHHHHHHHHHHhCCCCcEEEeCCCc-----cHH
Confidence 6788999999999999999999652 233 222 23444456666666655 47888765442 344
Q ss_pred HHHHHHHHHhhhCCccEEEEecCCcccCC-CCcCCcCCCCCccHHHHHHHHhcCC--CceEEE-e-----CCCCCHHHHH
Q 020423 213 QLCDFIYKVSSLSPTRHFIIHSRKALLNG-ISPAENRTIPPLKYEYYYALLRDFP--DLTFTL-N-----GGINTVDEVN 283 (326)
Q Consensus 213 e~~~~ia~~le~~Gvd~I~v~~~~~~~~g-~~~~~~~~~~~~~~~~i~~i~~~~~--~iPVIa-~-----GgI~s~~da~ 283 (326)
+.++ .++..++.|+|.+-+.... +.. .+ ...-++++.++.+..+ ++||+. | |---+++.+.
T Consensus 86 ~ai~-la~~A~~~Gadavlv~~P~--y~~~~s-------~~~l~~~f~~va~a~p~~~lPiilYn~P~~tg~~l~~~~~~ 155 (294)
T 3b4u_A 86 DAAD-QSAEALNAGARNILLAPPS--YFKNVS-------DDGLFAWFSAVFSKIGKDARDILVYNIPSVTMVTLSVELVG 155 (294)
T ss_dssp HHHH-HHHHHHHTTCSEEEECCCC--SSCSCC-------HHHHHHHHHHHHHHHCTTCCCEEEEECHHHHSCCCCHHHHH
T ss_pred HHHH-HHHHHHhcCCCEEEEcCCc--CCCCCC-------HHHHHHHHHHHHHhcCCCCCcEEEEECcchhCcCCCHHHHH
Confidence 5555 3556678999999886432 111 10 0112455566665543 789765 3 4446888887
Q ss_pred HHH
Q 020423 284 AAL 286 (326)
Q Consensus 284 ~~l 286 (326)
++.
T Consensus 156 ~La 158 (294)
T 3b4u_A 156 RLK 158 (294)
T ss_dssp HHH
T ss_pred HHH
Confidence 776
|
| >1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A | Back alignment and structure |
|---|
Probab=91.97 E-value=0.48 Score=40.04 Aligned_cols=79 Identities=13% Similarity=-0.003 Sum_probs=51.6
Q ss_pred CcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCC-CceEEEe
Q 020423 195 VPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFP-DLTFTLN 273 (326)
Q Consensus 195 ~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~-~iPVIa~ 273 (326)
.|+.+-+|.. +.++..+ +++.+.+.|++.|.++.+.. ...+.+.++++..+ ++ +++.
T Consensus 10 ~~~i~~~~~~-----~~~~~~~-~~~~~~~~G~~~iev~~~~~---------------~~~~~i~~ir~~~~~~~-~ig~ 67 (205)
T 1wa3_A 10 HKIVAVLRAN-----SVEEAKE-KALAVFEGGVHLIEITFTVP---------------DADTVIKELSFLKEKGA-IIGA 67 (205)
T ss_dssp HCEEEEECCS-----SHHHHHH-HHHHHHHTTCCEEEEETTST---------------THHHHHHHTHHHHHTTC-EEEE
T ss_pred CCEEEEEecC-----CHHHHHH-HHHHHHHCCCCEEEEeCCCh---------------hHHHHHHHHHHHCCCCc-EEEe
Confidence 3566655552 2334444 45566789999999986431 11334555555433 33 4667
Q ss_pred CCCCCHHHHHHHHHhCCChhhhh
Q 020423 274 GGINTVDEVNAALRKGAHHVMVG 296 (326)
Q Consensus 274 GgI~s~~da~~~l~~GaD~V~iG 296 (326)
|-+.+++++.++.+.|||+| ++
T Consensus 68 ~~v~~~~~~~~a~~~Gad~i-v~ 89 (205)
T 1wa3_A 68 GTVTSVEQCRKAVESGAEFI-VS 89 (205)
T ss_dssp ESCCSHHHHHHHHHHTCSEE-EC
T ss_pred cccCCHHHHHHHHHcCCCEE-Ec
Confidence 77899999999999999999 55
|
| >2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium tumefac C58, structural genomics, PSI-2; HET: MSE; 1.80A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=91.83 E-value=3 Score=38.36 Aligned_cols=126 Identities=9% Similarity=0.044 Sum_probs=76.5
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC--CCcEEEEeccCCCCCccHH
Q 020423 135 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYN 212 (326)
Q Consensus 135 ~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~--~~pv~vK~r~g~~~~~~~~ 212 (326)
|.+.+.+.+++..+.|.|+|-++.. +++ +.+| ..+.-.++++.+++.+ .+||.+.+... +..
T Consensus 53 D~~~l~~lv~~li~~Gv~Gl~v~Gt--------TGE-~~~L--s~eEr~~vi~~~ve~~~grvpViaGvg~~-----st~ 116 (332)
T 2r8w_A 53 DIEAFSALIARLDAAEVDSVGILGS--------TGI-YMYL--TREERRRAIEAAATILRGRRTLMAGIGAL-----RTD 116 (332)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEESST--------TTT-GGGS--CHHHHHHHHHHHHHHHTTSSEEEEEECCS-----SHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEECcc--------ccC-hhhC--CHHHHHHHHHHHHHHhCCCCcEEEecCCC-----CHH
Confidence 6788999999999999999999652 233 2222 2333344555554443 47888865442 344
Q ss_pred HHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEE-e-----CCCCCHHHHHHHH
Q 020423 213 QLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTL-N-----GGINTVDEVNAAL 286 (326)
Q Consensus 213 e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa-~-----GgI~s~~da~~~l 286 (326)
+.++ .++..++.|+|.+-+.... +...+ ...-++++.++.+.. ++||+. | |---+++.+.++.
T Consensus 117 eai~-la~~A~~~Gadavlv~~P~--Y~~~s-------~~~l~~~f~~VA~a~-~lPiilYn~P~~tg~~l~~e~~~~La 185 (332)
T 2r8w_A 117 EAVA-LAKDAEAAGADALLLAPVS--YTPLT-------QEEAYHHFAAVAGAT-ALPLAIYNNPTTTRFTFSDELLVRLA 185 (332)
T ss_dssp HHHH-HHHHHHHHTCSEEEECCCC--SSCCC-------HHHHHHHHHHHHHHC-SSCEEEECCHHHHCCCCCHHHHHHHH
T ss_pred HHHH-HHHHHHhcCCCEEEECCCC--CCCCC-------HHHHHHHHHHHHHhc-CCCEEEEeCccccCcCCCHHHHHHHH
Confidence 5555 3555678999999876422 11100 011245566666654 899876 3 4445888887775
Q ss_pred H
Q 020423 287 R 287 (326)
Q Consensus 287 ~ 287 (326)
+
T Consensus 186 ~ 186 (332)
T 2r8w_A 186 Y 186 (332)
T ss_dssp T
T ss_pred c
Confidence 4
|
| >3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A | Back alignment and structure |
|---|
Probab=91.83 E-value=2.3 Score=38.72 Aligned_cols=126 Identities=12% Similarity=0.100 Sum_probs=76.1
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC--CCcEEEEeccCCCCCccHH
Q 020423 135 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYN 212 (326)
Q Consensus 135 ~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~--~~pv~vK~r~g~~~~~~~~ 212 (326)
+.+.+.+.+++..+.|.|++-++.. +++ +.+| ..+.-.++++.+.+.+ .+||.+.+.. .+..
T Consensus 42 D~~~l~~lv~~li~~Gv~Gl~v~Gt--------TGE-~~~L--s~~Er~~v~~~~v~~~~grvpViaGvg~-----~st~ 105 (314)
T 3qze_A 42 DWDSLAKLVDFHLQEGTNAIVAVGT--------TGE-SATL--DVEEHIQVIRRVVDQVKGRIPVIAGTGA-----NSTR 105 (314)
T ss_dssp CHHHHHHHHHHHHHHTCCEEEESSG--------GGT-GGGC--CHHHHHHHHHHHHHHHTTSSCEEEECCC-----SSHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEECcc--------ccC-hhhC--CHHHHHHHHHHHHHHhCCCCcEEEeCCC-----cCHH
Confidence 6788999999999999999988642 233 2222 2333334444444433 4788885433 2345
Q ss_pred HHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEE------eCCCCCHHHHHHHH
Q 020423 213 QLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTL------NGGINTVDEVNAAL 286 (326)
Q Consensus 213 e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa------~GgI~s~~da~~~l 286 (326)
+.++ .++..++.|+|.+-+.... +...+ ...-++++.++.+.. ++||+. .|---+++.+.++.
T Consensus 106 eai~-la~~A~~~Gadavlv~~P~--y~~~s-------~~~l~~~f~~va~a~-~lPiilYn~P~~tg~~l~~~~~~~La 174 (314)
T 3qze_A 106 EAVA-LTEAAKSGGADACLLVTPY--YNKPT-------QEGMYQHFRHIAEAV-AIPQILYNVPGRTSCDMLPETVERLS 174 (314)
T ss_dssp HHHH-HHHHHHHTTCSEEEEECCC--SSCCC-------HHHHHHHHHHHHHHS-CSCEEEEECHHHHSCCCCHHHHHHHH
T ss_pred HHHH-HHHHHHHcCCCEEEEcCCC--CCCCC-------HHHHHHHHHHHHHhc-CCCEEEEeCccccCCCCCHHHHHHHh
Confidence 5555 3556678999999886432 11100 011245666666665 899865 25566788877766
Q ss_pred H
Q 020423 287 R 287 (326)
Q Consensus 287 ~ 287 (326)
+
T Consensus 175 ~ 175 (314)
T 3qze_A 175 K 175 (314)
T ss_dssp T
T ss_pred c
Confidence 4
|
| >2c6q_A GMP reductase 2; TIM barrel, metal-binding, NADP, oxidoreductase, potassium; HET: IMP NDP; 1.70A {Homo sapiens} PDB: 2bzn_A* 2a7r_A* 2ble_A* 2bwg_A* | Back alignment and structure |
|---|
Probab=91.79 E-value=0.28 Score=45.67 Aligned_cols=59 Identities=20% Similarity=0.320 Sum_probs=44.0
Q ss_pred CCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhh
Q 020423 225 SPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVG 296 (326)
Q Consensus 225 ~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iG 296 (326)
.|+|.+.+|... |. +...++.++++++..+++||+ .|++.+++++..+.+.|+|+|.++
T Consensus 131 ~g~~~i~i~~~~----g~--------~~~~~~~i~~lr~~~~~~~vi-~g~v~t~e~A~~a~~aGaD~I~v~ 189 (351)
T 2c6q_A 131 PQVKYICLDVAN----GY--------SEHFVEFVKDVRKRFPQHTIM-AGNVVTGEMVEELILSGADIIKVG 189 (351)
T ss_dssp TTCCEEEEECSC----TT--------BHHHHHHHHHHHHHCTTSEEE-EEEECSHHHHHHHHHTTCSEEEEC
T ss_pred CCCCEEEEEecC----CC--------cHHHHHHHHHHHHhcCCCeEE-EEeCCCHHHHHHHHHhCCCEEEEC
Confidence 389998887421 10 112367788887776689988 467889999999999999999664
|
| >3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0 | Back alignment and structure |
|---|
Probab=91.77 E-value=1 Score=38.05 Aligned_cols=129 Identities=12% Similarity=0.053 Sum_probs=73.4
Q ss_pred EEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhc-CCCcEEEEeccCC
Q 020423 127 IVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAAN-TNVPVSVKCRIGV 205 (326)
Q Consensus 127 iivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~-~~~pv~vK~r~g~ 205 (326)
+++.+--.+.++..+.++.+. .|+|.||+.. |.. . .+| .++++++|+. .+.|+.+-+-..
T Consensus 3 li~a~D~~~~~~~~~~~~~~~-~~~diie~G~--p~~--~---~~g----------~~~i~~ir~~~~~~~i~~~~~~~- 63 (211)
T 3f4w_A 3 LQLALDELTLPEAMVFMDKVV-DDVDIIEVGT--PFL--I---REG----------VNAIKAIKEKYPHKEVLADAKIM- 63 (211)
T ss_dssp EEEEECSCCHHHHHHHHHHHG-GGCSEEEECH--HHH--H---HHT----------THHHHHHHHHCTTSEEEEEEEEC-
T ss_pred EEEEeCCCCHHHHHHHHHHhh-cCccEEEeCc--HHH--H---hcc----------HHHHHHHHHhCCCCEEEEEEEec-
Confidence 444444456677777777664 5899999864 431 1 123 3677888876 478875532221
Q ss_pred CCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEe-CCCCCH-HHHH
Q 020423 206 DDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLN-GGINTV-DEVN 283 (326)
Q Consensus 206 ~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~-GgI~s~-~da~ 283 (326)
+. .+.. .+.+.++|+|.+++|.... ......+.+..++. +++++.. =...++ +.+.
T Consensus 64 -~~--~~~~----~~~~~~~Gad~v~v~~~~~--------------~~~~~~~~~~~~~~-g~~~~v~~~~~~t~~~~~~ 121 (211)
T 3f4w_A 64 -DG--GHFE----SQLLFDAGADYVTVLGVTD--------------VLTIQSCIRAAKEA-GKQVVVDMICVDDLPARVR 121 (211)
T ss_dssp -SC--HHHH----HHHHHHTTCSEEEEETTSC--------------HHHHHHHHHHHHHH-TCEEEEECTTCSSHHHHHH
T ss_pred -cc--hHHH----HHHHHhcCCCEEEEeCCCC--------------hhHHHHHHHHHHHc-CCeEEEEecCCCCHHHHHH
Confidence 11 1111 2233469999999986421 01123333334444 5666542 345565 5678
Q ss_pred HHHHhCCChhhhh
Q 020423 284 AALRKGAHHVMVG 296 (326)
Q Consensus 284 ~~l~~GaD~V~iG 296 (326)
.+.+.|+|.|.+.
T Consensus 122 ~~~~~g~d~i~v~ 134 (211)
T 3f4w_A 122 LLEEAGADMLAVH 134 (211)
T ss_dssp HHHHHTCCEEEEE
T ss_pred HHHHcCCCEEEEc
Confidence 8888999998753
|
| >3si9_A DHDPS, dihydrodipicolinate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 2.10A {Bartonella henselae} | Back alignment and structure |
|---|
Probab=91.73 E-value=2.6 Score=38.48 Aligned_cols=126 Identities=10% Similarity=0.089 Sum_probs=73.8
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC--CCcEEEEeccCCCCCccHH
Q 020423 135 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYN 212 (326)
Q Consensus 135 ~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~--~~pv~vK~r~g~~~~~~~~ 212 (326)
|.+.+.+.+++..+.|.|++-++.. +++ +.+| ..+.-.++++.+.+.+ .+||.+.+.. .+..
T Consensus 41 D~~~l~~li~~li~~Gv~Gl~v~Gt--------TGE-~~~L--s~~Er~~v~~~~v~~~~grvpViaGvg~-----~st~ 104 (315)
T 3si9_A 41 DEKAFCNFVEWQITQGINGVSPVGT--------TGE-SPTL--THEEHKRIIELCVEQVAKRVPVVAGAGS-----NSTS 104 (315)
T ss_dssp CHHHHHHHHHHHHHTTCSEEECSST--------TTT-GGGS--CHHHHHHHHHHHHHHHTTSSCBEEECCC-----SSHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCcc--------ccC-cccc--CHHHHHHHHHHHHHHhCCCCcEEEeCCC-----CCHH
Confidence 6788999999999999999988642 233 2222 2333344444444433 4788886433 2345
Q ss_pred HHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEE------eCCCCCHHHHHHHH
Q 020423 213 QLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTL------NGGINTVDEVNAAL 286 (326)
Q Consensus 213 e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa------~GgI~s~~da~~~l 286 (326)
+.++ .++..++.|+|.+-+.... +...+ ...-++++.++.+.. ++||+. .|---+++.+.++.
T Consensus 105 ~ai~-la~~A~~~Gadavlv~~P~--y~~~~-------~~~l~~~f~~va~a~-~lPiilYn~P~~tg~~l~~~~~~~La 173 (315)
T 3si9_A 105 EAVE-LAKHAEKAGADAVLVVTPY--YNRPN-------QRGLYTHFSSIAKAI-SIPIIIYNIPSRSVIDMAVETMRDLC 173 (315)
T ss_dssp HHHH-HHHHHHHTTCSEEEEECCC--SSCCC-------HHHHHHHHHHHHHHC-SSCEEEEECHHHHSCCCCHHHHHHHH
T ss_pred HHHH-HHHHHHhcCCCEEEECCCC--CCCCC-------HHHHHHHHHHHHHcC-CCCEEEEeCchhhCCCCCHHHHHHHH
Confidence 5555 3556678999999886432 11100 011244555665554 788754 25555677766665
Q ss_pred H
Q 020423 287 R 287 (326)
Q Consensus 287 ~ 287 (326)
+
T Consensus 174 ~ 174 (315)
T 3si9_A 174 R 174 (315)
T ss_dssp H
T ss_pred h
Confidence 4
|
| >1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A* | Back alignment and structure |
|---|
Probab=91.73 E-value=7.1 Score=35.01 Aligned_cols=137 Identities=15% Similarity=0.139 Sum_probs=82.4
Q ss_pred CCCcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEe-
Q 020423 123 EQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKC- 201 (326)
Q Consensus 123 ~~~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~- 201 (326)
...|+++...+.+.++-.+.++.++++|+|++-+- .|..+ . ...+-+.+-.++|.++++.|+.+=-
T Consensus 72 grvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~--~P~y~-------~----~~~~~l~~~f~~va~a~~lPiilYn~ 138 (293)
T 1f6k_A 72 DQIALIAQVGSVNLKEAVELGKYATELGYDCLSAV--TPFYY-------K----FSFPEIKHYYDTIIAETGSNMIVYSI 138 (293)
T ss_dssp TSSEEEEECCCSCHHHHHHHHHHHHHHTCSEEEEE--CCCSS-------C----CCHHHHHHHHHHHHHHHCCCEEEEEC
T ss_pred CCCeEEEecCCCCHHHHHHHHHHHHhcCCCEEEEC--CCCCC-------C----CCHHHHHHHHHHHHHhCCCCEEEEEC
Confidence 45789999998899999999999999999999885 34421 1 1245677777777777889988753
Q ss_pred --ccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCH
Q 020423 202 --RIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTV 279 (326)
Q Consensus 202 --r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~ 279 (326)
+.|.+- +.+.+ .++.+.-.+-.|--+.+ +...+.++++...++. +.+|. -
T Consensus 139 P~~tg~~l--~~~~~----~~La~~pnIvgiK~s~g------------------d~~~~~~~~~~~~~f~-v~~G~---d 190 (293)
T 1f6k_A 139 PFLTGVNM--GIEQF----GELYKNPKVLGVKFTAG------------------DFYLLERLKKAYPNHL-IWAGF---D 190 (293)
T ss_dssp HHHHCCCC--CHHHH----HHHHTSTTEEEEEECSC------------------CHHHHHHHHHHCTTSE-EEECC---G
T ss_pred ccccCcCC--CHHHH----HHHhcCCCEEEEEECCC------------------CHHHHHHHHHhCCCeE-EEECc---H
Confidence 223222 22222 23332223434332221 1344444444333444 34443 1
Q ss_pred HHHHHHHHhCCChhhhhHHHH
Q 020423 280 DEVNAALRKGAHHVMVGRAAY 300 (326)
Q Consensus 280 ~da~~~l~~GaD~V~iGRall 300 (326)
+.+...+..|++++..+.+-+
T Consensus 191 ~~~~~~l~~G~~G~is~~~n~ 211 (293)
T 1f6k_A 191 EMMLPAASLGVDGAIGSTFNV 211 (293)
T ss_dssp GGHHHHHHTTCSEEEESTHHH
T ss_pred HHHHHHHHCCCcEEEeCHHHh
Confidence 235667778888888776643
|
| >3nvt_A 3-deoxy-D-arabino-heptulosonate 7-phosphate synth; bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismat listeria monocytogenes EGD-E; 1.95A {Listeria monocytogenes} PDB: 3tfc_A* | Back alignment and structure |
|---|
Probab=91.65 E-value=8.8 Score=35.97 Aligned_cols=109 Identities=14% Similarity=0.116 Sum_probs=59.8
Q ss_pred cccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCc-cEEEEecCCcccCCCCcCCcCCC
Q 020423 172 GVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPT-RHFIIHSRKALLNGISPAENRTI 250 (326)
Q Consensus 172 Ggsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gv-d~I~v~~~~~~~~g~~~~~~~~~ 250 (326)
|+..+++..+ ++++ ...+.||.+|-... .+++|+...+. .+.+.|. +.+-+|.++..+... ..
T Consensus 232 gs~~~~n~~L----L~~~-a~~gkPVilk~G~~----~t~~e~~~Ave-~i~~~Gn~~i~L~~rG~s~yp~~------~~ 295 (385)
T 3nvt_A 232 GARNMQNFEL----LKAA-GRVDKPILLKRGLS----ATIEEFIGAAE-YIMSQGNGKIILCERGIRTYEKA------TR 295 (385)
T ss_dssp CGGGTTCHHH----HHHH-HTSSSCEEEECCTT----CCHHHHHHHHH-HHHTTTCCCEEEEECCBCCSCCS------SS
T ss_pred CcccccCHHH----HHHH-HccCCcEEEecCCC----CCHHHHHHHHH-HHHHcCCCeEEEEECCCCCCCCC------Cc
Confidence 4444455544 4444 34689999984442 34566655443 4455776 455556544322210 11
Q ss_pred CCccHHHHHHHHhcCCCceEEEe----CCCCCH--HHHHHHHHhCCChhhhhH
Q 020423 251 PPLKYEYYYALLRDFPDLTFTLN----GGINTV--DEVNAALRKGAHHVMVGR 297 (326)
Q Consensus 251 ~~~~~~~i~~i~~~~~~iPVIa~----GgI~s~--~da~~~l~~GaD~V~iGR 297 (326)
...++..+..+++.+ ++||+.. +|-+.. .-+..++..|||+++|=+
T Consensus 296 ~~ldl~~i~~lk~~~-~lpV~~D~th~~G~r~~v~~~a~AAvA~GA~gl~iE~ 347 (385)
T 3nvt_A 296 NTLDISAVPILKKET-HLPVMVDVTHSTGRKDLLLPCAKAALAIEADGVMAEV 347 (385)
T ss_dssp SBCCTTHHHHHHHHB-SSCEEEEHHHHHCCGGGHHHHHHHHHHTTCSEEEEEB
T ss_pred cccCHHHHHHHHHhc-CCCEEEcCCCCCCccchHHHHHHHHHHhCCCEEEEEe
Confidence 224566666666555 8998653 232222 345667789999887754
|
| >3jr2_A Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulonate-6-phosphate decarboxylase, ULAD, niaid,CSG bound, biosynthetic protein; HET: MSE; 1.80A {Vibrio cholerae} SCOP: c.1.2.0 PDB: 3ieb_A* | Back alignment and structure |
|---|
Probab=91.60 E-value=1.4 Score=37.75 Aligned_cols=127 Identities=14% Similarity=0.109 Sum_probs=73.6
Q ss_pred cEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC-CCcE--EEEec
Q 020423 126 PIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPV--SVKCR 202 (326)
Q Consensus 126 piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~-~~pv--~vK~r 202 (326)
++++-+--.+.++-.+.++.+ +.|.|.+|+++ |. +.. +| .++++++|+.. +.|+ .+|+-
T Consensus 8 ~lilalD~~~~~~~~~~~~~~-~~~vd~ie~g~--~~--~~~---~G----------~~~i~~lr~~~~~~~i~ld~~l~ 69 (218)
T 3jr2_A 8 MIQIALDQTNLTDAVAVASNV-ASYVDVIEVGT--IL--AFA---EG----------MKAVSTLRHNHPNHILVCDMKTT 69 (218)
T ss_dssp EEEEEECCSSHHHHHHHHHHH-GGGCSEEEECH--HH--HHH---HT----------THHHHHHHHHCTTSEEEEEEEEC
T ss_pred CeEEEeCCCCHHHHHHHHHHh-cCCceEEEeCc--HH--HHh---cC----------HHHHHHHHHhCCCCcEEEEEeec
Confidence 466666566777777777765 45799999974 11 111 23 35777887763 5555 45543
Q ss_pred cCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEE-eCCCCCHHH
Q 020423 203 IGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTL-NGGINTVDE 281 (326)
Q Consensus 203 ~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa-~GgI~s~~d 281 (326)
+.. +.. .+.+.++|+|++++|.-.. ....+.+.+..++. +++.+. .=++.|+++
T Consensus 70 ---d~p---~~~----~~~~~~aGad~i~vh~~~~--------------~~~~~~~~~~~~~~-g~~~~~d~l~~~T~~~ 124 (218)
T 3jr2_A 70 ---DGG---AIL----SRMAFEAGADWITVSAAAH--------------IATIAACKKVADEL-NGEIQIEIYGNWTMQD 124 (218)
T ss_dssp ---SCH---HHH----HHHHHHHTCSEEEEETTSC--------------HHHHHHHHHHHHHH-TCEEEEECCSSCCHHH
T ss_pred ---ccH---HHH----HHHHHhcCCCEEEEecCCC--------------HHHHHHHHHHHHHh-CCccceeeeecCCHHH
Confidence 111 111 2334568999999996421 00122222233333 555443 333457888
Q ss_pred HHHHHHhCCChhhh
Q 020423 282 VNAALRKGAHHVMV 295 (326)
Q Consensus 282 a~~~l~~GaD~V~i 295 (326)
+.++.+.|+|.+.+
T Consensus 125 ~~~~~~~g~d~v~~ 138 (218)
T 3jr2_A 125 AKAWVDLGITQAIY 138 (218)
T ss_dssp HHHHHHTTCCEEEE
T ss_pred HHHHHHcCccceee
Confidence 88888889997654
|
| >2qiw_A PEP phosphonomutase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: P6G; 1.80A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=91.58 E-value=1 Score=39.97 Aligned_cols=104 Identities=12% Similarity=0.087 Sum_probs=62.3
Q ss_pred hhhcCCCCCcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecC-CCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCC
Q 020423 117 FLAFSPEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNC-GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNV 195 (326)
Q Consensus 117 ~~~~~~~~~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~-g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~ 195 (326)
+.+.|..+.|++ =+...+ .-.|+.+.++|||.|=+-. +.-. ... |-....-..+.+...++.|.+.++.
T Consensus 12 lr~l~~~~~~i~-~~~ayD----~~sA~~~~~aG~dai~vg~~s~a~--~~G---~pD~~~vt~~em~~~~~~I~r~~~~ 81 (255)
T 2qiw_A 12 FASDHESGKLLV-LPTVWD----TWSAGLVEEAGFSGLTIGSHPVAD--ATG---SSDGENMNFADYMAVVKKITSAVSI 81 (255)
T ss_dssp HHHHHHTCCCEE-CCEESS----HHHHHHHHHTTCSCEEECHHHHHH--HTT---CCTTTCSCHHHHHHHHHHHHHHCSS
T ss_pred HHHHHhCCCcEE-EecCcC----HHHHHHHHHcCCCEEEEChHHHHH--hCC---CCCCCCcCHHHHHHHHHHHHhcCCC
Confidence 334454555543 233344 3456778889999998852 1100 000 1111123456677777888888889
Q ss_pred cEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCC
Q 020423 196 PVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRK 236 (326)
Q Consensus 196 pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~ 236 (326)
||++-+-.|+.+.. .+.+.++ .++|++.|++.+..
T Consensus 82 pviaD~~~Gyg~~~-----~~~~~~l-~~aGa~gv~iEd~~ 116 (255)
T 2qiw_A 82 PVSVDVESGYGLSP-----ADLIAQI-LEAGAVGINVEDVV 116 (255)
T ss_dssp CEEEECTTCTTCCH-----HHHHHHH-HHTTCCEEEECSEE
T ss_pred CEEeccCCCcCcHH-----HHHHHHH-HHcCCcEEEECCCC
Confidence 99999999864432 2323344 46999999998754
|
| >3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid biosynthesis, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.1.10.0 PDB: 3ler_A* | Back alignment and structure |
|---|
Probab=91.56 E-value=4.6 Score=36.46 Aligned_cols=127 Identities=13% Similarity=0.120 Sum_probs=77.0
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC---CCcEEEEeccCCCCCccH
Q 020423 135 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT---NVPVSVKCRIGVDDHDSY 211 (326)
Q Consensus 135 ~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~---~~pv~vK~r~g~~~~~~~ 211 (326)
|.+.+.+..++..+.|.|++-++.. +++ +.+| ..+.-.++++.+.+.+ ..||.+.+.. .+.
T Consensus 26 D~~~l~~lv~~li~~Gv~gl~v~Gt--------tGE-~~~L--s~~Er~~v~~~~~~~~~g~rvpviaGvg~-----~~t 89 (301)
T 3m5v_A 26 DEQSYARLIKRQIENGIDAVVPVGT--------TGE-SATL--THEEHRTCIEIAVETCKGTKVKVLAGAGS-----NAT 89 (301)
T ss_dssp CHHHHHHHHHHHHHTTCCEEECSST--------TTT-GGGS--CHHHHHHHHHHHHHHHTTSSCEEEEECCC-----SSH
T ss_pred CHHHHHHHHHHHHHcCCCEEEECcc--------ccC-hhhC--CHHHHHHHHHHHHHHhCCCCCeEEEeCCC-----CCH
Confidence 6788999999999999999988652 233 2222 2333344455444443 3688776433 234
Q ss_pred HHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEE------eCCCCCHHHHHHH
Q 020423 212 NQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTL------NGGINTVDEVNAA 285 (326)
Q Consensus 212 ~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa------~GgI~s~~da~~~ 285 (326)
.+.++ .++..++.|+|.+-+.... +...+ ...-++++.++.+.. ++||+. .|---+++.+.++
T Consensus 90 ~~ai~-la~~a~~~Gadavlv~~P~--y~~~s-------~~~l~~~f~~va~a~-~lPiilYn~P~~tg~~l~~~~~~~L 158 (301)
T 3m5v_A 90 HEAVG-LAKFAKEHGADGILSVAPY--YNKPT-------QQGLYEHYKAIAQSV-DIPVLLYNVPGRTGCEISTDTIIKL 158 (301)
T ss_dssp HHHHH-HHHHHHHTTCSEEEEECCC--SSCCC-------HHHHHHHHHHHHHHC-SSCEEEEECHHHHSCCCCHHHHHHH
T ss_pred HHHHH-HHHHHHHcCCCEEEEcCCC--CCCCC-------HHHHHHHHHHHHHhC-CCCEEEEeCchhhCcCCCHHHHHHH
Confidence 55555 3556678999999887432 11100 011245566666665 899874 3656688887777
Q ss_pred HHh
Q 020423 286 LRK 288 (326)
Q Consensus 286 l~~ 288 (326)
.+.
T Consensus 159 a~~ 161 (301)
T 3m5v_A 159 FRD 161 (301)
T ss_dssp HHH
T ss_pred Hhc
Confidence 653
|
| >3iwp_A Copper homeostasis protein CUTC homolog; conserved sequence motif, metal-binding site, polymorphism, metal binding protein; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.46 E-value=2.6 Score=37.98 Aligned_cols=89 Identities=16% Similarity=0.186 Sum_probs=54.0
Q ss_pred EEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCC
Q 020423 127 IVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVD 206 (326)
Q Consensus 127 iivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~ 206 (326)
+.+.+...+.+ .+..|.+.|+|-|||..+-.. || +.-.+ .+++.+++.+++||-+=+|+-..
T Consensus 40 ~~lEvc~~s~~----~a~~A~~gGAdRIELc~~l~~---------GG-lTPS~----g~i~~a~~~~~ipV~vMIRPRgG 101 (287)
T 3iwp_A 40 FLMEVCVDSVE----SAVNAERGGADRIELCSGLSE---------GG-TTPSM----GVLQVVKQSVQIPVFVMIRPRGG 101 (287)
T ss_dssp SEEEEEESSHH----HHHHHHHHTCSEEEECBCGGG---------TC-BCCCH----HHHHHHHTTCCSCEEEECCSSSS
T ss_pred ceEEEEeCCHH----HHHHHHHhCCCEEEECCCCCC---------CC-CCCCH----HHHHHHHHhcCCCeEEEEecCCC
Confidence 56677666654 455677889999999632111 11 11112 35666677778998887776322
Q ss_pred C----CccHHHHHHHHHHHhhhCCccEEEEec
Q 020423 207 D----HDSYNQLCDFIYKVSSLSPTRHFIIHS 234 (326)
Q Consensus 207 ~----~~~~~e~~~~ia~~le~~Gvd~I~v~~ 234 (326)
+ ..+++.+.+.+. .+.++|+|.|++..
T Consensus 102 dF~Ys~~E~~~M~~dI~-~~~~~GAdGvVfG~ 132 (287)
T 3iwp_A 102 DFLYSDREIEVMKADIR-LAKLYGADGLVFGA 132 (287)
T ss_dssp CSCCCHHHHHHHHHHHH-HHHHTTCSEEEECC
T ss_pred CcccCHHHHHHHHHHHH-HHHHcCCCEEEEee
Confidence 2 123444444443 44579999999874
|
| >2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A 3nev_A* 3n2x_A* | Back alignment and structure |
|---|
Probab=91.45 E-value=2.2 Score=39.44 Aligned_cols=125 Identities=12% Similarity=0.026 Sum_probs=75.2
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC--CCcEEEEeccCCCCCccHH
Q 020423 135 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYN 212 (326)
Q Consensus 135 ~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~--~~pv~vK~r~g~~~~~~~~ 212 (326)
|.+.+.+.+++..+.|.|+|-++.. +++ +.+| ..+.-.++++.+++.+ .+||.+.+.. .+..
T Consensus 50 D~~~l~~lv~~li~~Gv~Gl~v~Gt--------TGE-~~~L--s~eEr~~vi~~~ve~~~grvpViaGvg~-----~st~ 113 (343)
T 2v9d_A 50 DKPGTAALIDDLIKAGVDGLFFLGS--------GGE-FSQL--GAEERKAIARFAIDHVDRRVPVLIGTGG-----TNAR 113 (343)
T ss_dssp CHHHHHHHHHHHHHTTCSCEEESST--------TTT-GGGS--CHHHHHHHHHHHHHHHTTSSCEEEECCS-----SCHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCcc--------ccC-hhhC--CHHHHHHHHHHHHHHhCCCCcEEEecCC-----CCHH
Confidence 6788999999999999999999652 233 2222 2333344455444433 4788876443 2344
Q ss_pred HHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEE-e-----CCCCCHHHHHHHH
Q 020423 213 QLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTL-N-----GGINTVDEVNAAL 286 (326)
Q Consensus 213 e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa-~-----GgI~s~~da~~~l 286 (326)
+.++ .++..++.|+|.+-+.... +...+ ...-++++.++.+. .++||+. | |--.+++.+.++.
T Consensus 114 eai~-la~~A~~~Gadavlv~~P~--Y~~~s-------~~~l~~~f~~VA~a-~~lPiilYn~P~~tg~~l~~e~~~~La 182 (343)
T 2v9d_A 114 ETIE-LSQHAQQAGADGIVVINPY--YWKVS-------EANLIRYFEQVADS-VTLPVMLYNFPALTGQDLTPALVKTLA 182 (343)
T ss_dssp HHHH-HHHHHHHHTCSEEEEECCS--SSCCC-------HHHHHHHHHHHHHT-CSSCEEEEECHHHHSSCCCHHHHHHHH
T ss_pred HHHH-HHHHHHhcCCCEEEECCCC--CCCCC-------HHHHHHHHHHHHHh-cCCCEEEEeCchhcCcCCCHHHHHHHH
Confidence 5555 3556678999999886432 11100 01124455666655 4889765 3 4445888887776
|
| >3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=91.43 E-value=3.3 Score=37.52 Aligned_cols=126 Identities=7% Similarity=0.026 Sum_probs=73.8
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC--CCcEEEEeccCCCCCccHH
Q 020423 135 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYN 212 (326)
Q Consensus 135 ~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~--~~pv~vK~r~g~~~~~~~~ 212 (326)
|.+.+.+.+++..+.|.|+|-++.. +|+ +.+| ..+.-.++++.+++.+ ..||.+.+.. .+..
T Consensus 35 D~~~l~~lv~~li~~Gv~gl~v~Gt--------tGE-~~~L--s~~Er~~v~~~~~~~~~grvpviaGvg~-----~st~ 98 (304)
T 3cpr_A 35 DIAAGREVAAYLVDKGLDSLVLAGT--------TGE-SPTT--TAAEKLELLKAVREEVGDRAKLIAGVGT-----NNTR 98 (304)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEESST--------TTT-TTTS--CHHHHHHHHHHHHHHHTTTSEEEEECCC-----SCHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEECcc--------ccC-hhhC--CHHHHHHHHHHHHHHhCCCCcEEecCCC-----CCHH
Confidence 6788999999999999999998653 233 1111 2233344444444433 4788776443 2344
Q ss_pred HHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEE-e-----CCCCCHHHHHHHH
Q 020423 213 QLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTL-N-----GGINTVDEVNAAL 286 (326)
Q Consensus 213 e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa-~-----GgI~s~~da~~~l 286 (326)
+.++ .++..++.|+|.+-+.... +...+ ...-++++.++.+.. ++||+. | |---+++.+.++.
T Consensus 99 ~ai~-la~~A~~~Gadavlv~~P~--y~~~~-------~~~l~~~f~~ia~a~-~lPiilYn~P~~tg~~l~~~~~~~La 167 (304)
T 3cpr_A 99 TSVE-LAEAAASAGADGLLVVTPY--YSKPS-------QEGLLAHFGAIAAAT-EVPICLYDIPGRSGIPIESDTMRRLS 167 (304)
T ss_dssp HHHH-HHHHHHHTTCSEEEEECCC--SSCCC-------HHHHHHHHHHHHHHC-CSCEEEEECHHHHSSCCCHHHHHHHT
T ss_pred HHHH-HHHHHHhcCCCEEEECCCC--CCCCC-------HHHHHHHHHHHHHhc-CCCEEEEeCccccCcCCCHHHHHHHH
Confidence 5555 3556678999999886431 11100 011244556666554 788765 3 4445777776664
Q ss_pred H
Q 020423 287 R 287 (326)
Q Consensus 287 ~ 287 (326)
+
T Consensus 168 ~ 168 (304)
T 3cpr_A 168 E 168 (304)
T ss_dssp T
T ss_pred c
Confidence 3
|
| >2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A | Back alignment and structure |
|---|
Probab=91.37 E-value=7.9 Score=34.90 Aligned_cols=137 Identities=16% Similarity=0.189 Sum_probs=81.9
Q ss_pred CCCcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCC-CcEEEEe
Q 020423 123 EQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTN-VPVSVKC 201 (326)
Q Consensus 123 ~~~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~-~pv~vK~ 201 (326)
...|+++...+.+.++-.+.++.++++|+|++-+- .|..+ . ...+-+.+-.++|.++++ .|+.+=-
T Consensus 79 grvpViaGvg~~~t~~ai~la~~A~~~Gadavlv~--~P~y~-~----------~s~~~l~~~f~~va~a~~~lPiilYn 145 (303)
T 2wkj_A 79 GKIKLIAHVGCVSTAESQQLAASAKRYGFDAVSAV--TPFYY-P----------FSFEEHCDHYRAIIDSADGLPMVVYN 145 (303)
T ss_dssp TTSEEEEECCCSSHHHHHHHHHHHHHHTCSEEEEE--CCCSS-C----------CCHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCcEEEecCCCCHHHHHHHHHHHHhCCCCEEEec--CCCCC-C----------CCHHHHHHHHHHHHHhCCCCCEEEEe
Confidence 45789999988899999999999999999999885 34421 1 135667777777777777 9988753
Q ss_pred ---ccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCC
Q 020423 202 ---RIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT 278 (326)
Q Consensus 202 ---r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s 278 (326)
+.|.+- +.+.+ .++.+.-.+..|--+.+ +...+.++++...++.| .+|.
T Consensus 146 ~P~~tg~~l--~~~~~----~~La~~pnIvgiK~s~g------------------d~~~~~~~~~~~~~f~v-~~G~--- 197 (303)
T 2wkj_A 146 IPALSGVKL--TLDQI----NTLVTLPGVGALXQTSG------------------DLYQMEQIRREHPDLVL-YNGY--- 197 (303)
T ss_dssp CHHHHCCCC--CHHHH----HHHHTSTTEEEEEECCC------------------CHHHHHHHHHHCTTCEE-EECC---
T ss_pred CccccCCCC--CHHHH----HHHhcCCCEEEEeCCCC------------------CHHHHHHHHHhCCCeEE-EeCc---
Confidence 223222 22222 23333223444432221 13334444443334443 4443
Q ss_pred HHHHHHHHHhCCChhhhhHHHH
Q 020423 279 VDEVNAALRKGAHHVMVGRAAY 300 (326)
Q Consensus 279 ~~da~~~l~~GaD~V~iGRall 300 (326)
-+.+...+..|++++..+.+-+
T Consensus 198 d~~~~~~l~~G~~G~is~~an~ 219 (303)
T 2wkj_A 198 DNIFASGLLAGADGGIGSTYNI 219 (303)
T ss_dssp GGGHHHHHHHTCCEEEETTHHH
T ss_pred HHHHHHHHHCCCCEEEeCHHHh
Confidence 1235666778888888776543
|
| >2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis, diaminopimelate biosyn lyase, lysine biosynthesis, schiff base; 1.50A {Hahella chejuensis} | Back alignment and structure |
|---|
Probab=91.31 E-value=5.6 Score=35.81 Aligned_cols=66 Identities=11% Similarity=0.111 Sum_probs=51.5
Q ss_pred CCCcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEe
Q 020423 123 EQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKC 201 (326)
Q Consensus 123 ~~~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~ 201 (326)
...|+++...+.+.++-.+.++.++++|+|++-+- .|..+ . ...+-+.+-.++|.++++.|+.+=-
T Consensus 68 grvpviaGvg~~~t~~ai~la~~A~~~Gadavlv~--~P~y~-~----------~s~~~l~~~f~~va~a~~lPiilYn 133 (297)
T 2rfg_A 68 GRVPVIAGAGSNNPVEAVRYAQHAQQAGADAVLCV--AGYYN-R----------PSQEGLYQHFKMVHDAIDIPIIVYN 133 (297)
T ss_dssp TSSCBEEECCCSSHHHHHHHHHHHHHHTCSEEEEC--CCTTT-C----------CCHHHHHHHHHHHHHHCSSCEEEEE
T ss_pred CCCeEEEccCCCCHHHHHHHHHHHHhcCCCEEEEc--CCCCC-C----------CCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 45789999998899999999999999999999885 34421 1 1356677777888888899988753
|
| >3s5o_A 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; beta barrel, schiff base, hydroxyproline metabolis; HET: KPI; 1.97A {Homo sapiens} SCOP: c.1.10.0 PDB: 3s5n_A | Back alignment and structure |
|---|
Probab=91.21 E-value=2.9 Score=37.92 Aligned_cols=128 Identities=11% Similarity=0.019 Sum_probs=76.1
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC--CCcEEEEeccCCCCCccHH
Q 020423 135 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYN 212 (326)
Q Consensus 135 ~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~--~~pv~vK~r~g~~~~~~~~ 212 (326)
+.+.+.+.+++..+.|.|++-++.. +++ +.+ -..+.-.++++.+++.+ ..||.+.+.. .+..
T Consensus 33 D~~~l~~lv~~li~~Gv~Gl~v~Gt--------TGE-~~~--Ls~~Er~~v~~~~~~~~~gr~pviaGvg~-----~~t~ 96 (307)
T 3s5o_A 33 DYGKLEENLHKLGTFPFRGFVVQGS--------NGE-FPF--LTSSERLEVVSRVRQAMPKNRLLLAGSGC-----ESTQ 96 (307)
T ss_dssp CHHHHHHHHHHHTTSCCSEEEESSG--------GGT-GGG--SCHHHHHHHHHHHHHTSCTTSEEEEECCC-----SSHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEECcc--------ccc-hhh--CCHHHHHHHHHHHHHHcCCCCcEEEecCC-----CCHH
Confidence 6788999999999999999998642 233 222 23444456677776665 5678775432 2344
Q ss_pred HHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEE-e-----CCCCCHHHHHHHH
Q 020423 213 QLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTL-N-----GGINTVDEVNAAL 286 (326)
Q Consensus 213 e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa-~-----GgI~s~~da~~~l 286 (326)
+.++ +++..++.|+|.+-+..-..+....+ ...-++++.++.+.. ++||+. | |---+++.+.++.
T Consensus 97 ~ai~-la~~A~~~Gadavlv~~P~y~~~~~s-------~~~l~~~f~~ia~a~-~lPiilYn~P~~tg~~l~~~~~~~La 167 (307)
T 3s5o_A 97 ATVE-MTVSMAQVGADAAMVVTPCYYRGRMS-------SAALIHHYTKVADLS-PIPVVLYSVPANTGLDLPVDAVVTLS 167 (307)
T ss_dssp HHHH-HHHHHHHTTCSEEEEECCCTTGGGCC-------HHHHHHHHHHHHHHC-SSCEEEEECHHHHSCCCCHHHHHHHH
T ss_pred HHHH-HHHHHHHcCCCEEEEcCCCcCCCCCC-------HHHHHHHHHHHHhhc-CCCEEEEeCCcccCCCCCHHHHHHHh
Confidence 5555 35566789999998864321100000 011244556666554 788764 2 4345777776665
Q ss_pred H
Q 020423 287 R 287 (326)
Q Consensus 287 ~ 287 (326)
+
T Consensus 168 ~ 168 (307)
T 3s5o_A 168 Q 168 (307)
T ss_dssp T
T ss_pred c
Confidence 4
|
| >1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A* | Back alignment and structure |
|---|
Probab=91.20 E-value=2.6 Score=38.03 Aligned_cols=143 Identities=7% Similarity=-0.146 Sum_probs=71.4
Q ss_pred HHHHHHHHCCCCEEEecCCCCCCc--cc-----CCC-----CccccccCC-HHHHHHHHHHHHhcC--CCcEEEEeccCC
Q 020423 141 KATELANAYNYDEINLNCGCPSPK--VA-----GHG-----CFGVSLMLD-PKFVGEAMSVIAANT--NVPVSVKCRIGV 205 (326)
Q Consensus 141 ~aA~~a~~aG~d~Iein~g~P~~~--~~-----r~d-----~yGgsl~~r-~~~l~eiv~avr~~~--~~pv~vK~r~g~ 205 (326)
+..+.+.+.|+..|++..-++.+. +. +.. .+| +.++ .+.+.+.++..++.. +.|+.+-+..
T Consensus 27 ~~~~~~~~~G~g~i~~~~v~~~~~~gn~~pr~~~~~~~~in~~g--~~~~g~~~~~~~~~~~~~~~~~~~p~~~~i~g-- 102 (311)
T 1jub_A 27 EDLEELKASQAGAYITKSSTLEKREGNPLPRYVDLELGSINSMG--LPNLGFDYYLDYVLKNQKENAQEGPIFFSIAG-- 102 (311)
T ss_dssp HHHHHHHHSSCSCCBCCCBCSSCBCCSCSCCEEEETTEEEECCC--CCBSCHHHHHHHHHHHHHHTCSSSCCEEEECC--
T ss_pred HHHHHHHHCCCCEEEeCccCCcccCCCCCCcEEecccceeecCC--CCCccHHHHHHHHHHHHHhcCCCCCEEEEcCC--
Confidence 334556788998888755443321 10 000 012 1111 333334444444344 6888877652
Q ss_pred CCCccHHHHHHHHHHHhhhCCcc-EEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEE--eCCCCCHHHH
Q 020423 206 DDHDSYNQLCDFIYKVSSLSPTR-HFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTL--NGGINTVDEV 282 (326)
Q Consensus 206 ~~~~~~~e~~~~ia~~le~~Gvd-~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa--~GgI~s~~da 282 (326)
.+.++..+ .++.++++|+| +|.++-..+...+. .....-+...++.+.++++. .++||+. +.++ +.+++
T Consensus 103 ---~~~~~~~~-~a~~~~~~g~d~~iein~~~P~~~g~--~~~g~~~e~~~~iv~~vr~~-~~~Pv~vKi~~~~-~~~~~ 174 (311)
T 1jub_A 103 ---MSAAENIA-MLKKIQESDFSGITELNLSCPNVPGE--PQLAYDFEATEKLLKEVFTF-FTKPLGVKLPPYF-DLVHF 174 (311)
T ss_dssp ---SSHHHHHH-HHHHHHHSCCCSEEEEESCCCCSSSC--CCGGGCHHHHHHHHHHHTTT-CCSCEEEEECCCC-SHHHH
T ss_pred ---CCHHHHHH-HHHHHHhcCCCeEEEEeccCCCCCCc--ccccCCHHHHHHHHHHHHHh-cCCCEEEEECCCC-CHHHH
Confidence 23445555 45566789999 99998643322110 00000000113445554443 4889875 4444 55554
Q ss_pred HH----HHHhCCChhhh
Q 020423 283 NA----ALRKGAHHVMV 295 (326)
Q Consensus 283 ~~----~l~~GaD~V~i 295 (326)
.+ +.+.|+|+|.+
T Consensus 175 ~~~a~~~~~~G~d~i~v 191 (311)
T 1jub_A 175 DIMAEILNQFPLTYVNS 191 (311)
T ss_dssp HHHHHHHTTSCCCEEEE
T ss_pred HHHHHHHHHcCCcEEEe
Confidence 33 33379998765
|
| >1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1 | Back alignment and structure |
|---|
Probab=91.19 E-value=0.21 Score=47.40 Aligned_cols=62 Identities=21% Similarity=0.280 Sum_probs=45.7
Q ss_pred hhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhh
Q 020423 222 SSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVG 296 (326)
Q Consensus 222 le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iG 296 (326)
+.++|+|.|.++... |. +...++.+..+++..+++||++ |++.+.+++..+.+.|+|+|.+|
T Consensus 161 ~~~~G~d~i~i~~~~----g~--------~~~~~e~i~~ir~~~~~~pviv-~~v~~~~~a~~a~~~Gad~I~vg 222 (404)
T 1eep_A 161 LVKAHVDILVIDSAH----GH--------STRIIELIKKIKTKYPNLDLIA-GNIVTKEAALDLISVGADCLKVG 222 (404)
T ss_dssp HHHTTCSEEEECCSC----CS--------SHHHHHHHHHHHHHCTTCEEEE-EEECSHHHHHHHHTTTCSEEEEC
T ss_pred HHHCCCCEEEEeCCC----CC--------hHHHHHHHHHHHHHCCCCeEEE-cCCCcHHHHHHHHhcCCCEEEEC
Confidence 346899999985321 10 1223667777777655899987 67889999999999999999883
|
| >1vli_A Spore coat polysaccharide biosynthesis protein SP; 2636322, JCSG, protein structure initiative, BS SPSE, PSI; 2.38A {Bacillus subtilis} SCOP: b.85.1.1 c.1.10.6 | Back alignment and structure |
|---|
Probab=91.13 E-value=2.8 Score=39.32 Aligned_cols=131 Identities=12% Similarity=0.070 Sum_probs=78.0
Q ss_pred EEEEecC---CCHHHHHHHHHHHHHCCCCEEEecCCCCCCc-------ccCCCCccccc-------cCCHHHHHHHHHHH
Q 020423 127 IVLQIGG---SNLDNLAKATELANAYNYDEINLNCGCPSPK-------VAGHGCFGVSL-------MLDPKFVGEAMSVI 189 (326)
Q Consensus 127 iivQL~g---~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~-------~~r~d~yGgsl-------~~r~~~l~eiv~av 189 (326)
+|..+.. .+.+...+.++.|+++|+|.|-...-.|... .+..+.+|.++ +-..+... .+...
T Consensus 31 IIAEiG~NH~Gsle~A~~li~~Ak~aGAdavKfQ~~k~~tl~s~~~~~fq~~~~~~~~~ye~~~~~~l~~e~~~-~L~~~ 109 (385)
T 1vli_A 31 IIAEAGINHDGKLDQAFALIDAAAEAGADAVKFQMFQADRMYQKDPGLYKTAAGKDVSIFSLVQSMEMPAEWIL-PLLDY 109 (385)
T ss_dssp EEEEEETTTTTCHHHHHHHHHHHHHHTCSEEEECCBCGGGGTSCCC---------CCCHHHHGGGBSSCGGGHH-HHHHH
T ss_pred EEEeecCcccccHHHHHHHHHHHHHhCCCEEeeeeeccCcccCcchhhhccCCCCCccHHHHHHhcCCCHHHHH-HHHHH
Confidence 5565642 2567777888899999999999875444321 01111122111 11223333 33444
Q ss_pred HhcCCCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCce
Q 020423 190 AANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLT 269 (326)
Q Consensus 190 r~~~~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iP 269 (326)
++..|+++.. .-+ +.+ .+ ..+++.|+|.+-|..++- .++.+++++.+. +.|
T Consensus 110 ~~~~Gi~~~s---tpf----D~~-sv----d~l~~~~vd~~KIgS~~~---------------~N~pLL~~va~~--gKP 160 (385)
T 1vli_A 110 CREKQVIFLS---TVC----DEG-SA----DLLQSTSPSAFKIASYEI---------------NHLPLLKYVARL--NRP 160 (385)
T ss_dssp HHHTTCEEEC---BCC----SHH-HH----HHHHTTCCSCEEECGGGT---------------TCHHHHHHHHTT--CSC
T ss_pred HHHcCCcEEE---ccC----CHH-HH----HHHHhcCCCEEEECcccc---------------cCHHHHHHHHhc--CCe
Confidence 4556777632 111 121 12 244568999999877642 237778777653 899
Q ss_pred EEEeCCCCCHHHHHHHHH
Q 020423 270 FTLNGGINTVDEVNAALR 287 (326)
Q Consensus 270 VIa~GgI~s~~da~~~l~ 287 (326)
||.+=|..|.+++..+++
T Consensus 161 ViLStGmaTl~Ei~~Ave 178 (385)
T 1vli_A 161 MIFSTAGAEISDVHEAWR 178 (385)
T ss_dssp EEEECTTCCHHHHHHHHH
T ss_pred EEEECCCCCHHHHHHHHH
Confidence 999999999999888776
|
| >3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=91.13 E-value=0.21 Score=47.45 Aligned_cols=62 Identities=13% Similarity=0.212 Sum_probs=44.9
Q ss_pred HhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhh
Q 020423 221 VSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVG 296 (326)
Q Consensus 221 ~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iG 296 (326)
.+.++|+|.|.+.... |. +....+.++++++.+ ++||++ |++.+.+++..+.+.|||+|.+|
T Consensus 151 ~lveaGvdvIvldta~----G~--------~~~~~e~I~~ik~~~-~i~Vi~-g~V~t~e~A~~a~~aGAD~I~vG 212 (400)
T 3ffs_A 151 LLVEAGVDVIVLDSAH----GH--------SLNIIRTLKEIKSKM-NIDVIV-GNVVTEEATKELIENGADGIKVG 212 (400)
T ss_dssp HHHHHTCSEEEECCSC----CS--------BHHHHHHHHHHHTTC-CCEEEE-EEECSHHHHHHHHHTTCSEEEEC
T ss_pred HHHHcCCCEEEEeCCC----CC--------cccHHHHHHHHHhcC-CCeEEE-eecCCHHHHHHHHHcCCCEEEEe
Confidence 3346899999875321 11 111245677776665 889886 67899999999999999999995
|
| >2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis, diaminopimelate biosyn lyase, lysine biosynthesis, schiff base; 1.50A {Hahella chejuensis} | Back alignment and structure |
|---|
Probab=91.06 E-value=2.5 Score=38.15 Aligned_cols=126 Identities=10% Similarity=0.025 Sum_probs=74.2
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC--CCcEEEEeccCCCCCccHH
Q 020423 135 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYN 212 (326)
Q Consensus 135 ~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~--~~pv~vK~r~g~~~~~~~~ 212 (326)
|.+.+.+.+++..+.|.|++-++.. +++ +.+| ..+.-.++++.+++.+ .+||.+.+.. .+..
T Consensus 19 D~~~l~~lv~~li~~Gv~gi~v~Gt--------tGE-~~~L--s~~Er~~v~~~~~~~~~grvpviaGvg~-----~~t~ 82 (297)
T 2rfg_A 19 DEKALAGLVDWQIKHGAHGLVPVGT--------TGE-SPTL--TEEEHKRVVALVAEQAQGRVPVIAGAGS-----NNPV 82 (297)
T ss_dssp CHHHHHHHHHHHHHTTCSEEECSSG--------GGT-GGGS--CHHHHHHHHHHHHHHHTTSSCBEEECCC-----SSHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEECcc--------ccc-hhhC--CHHHHHHHHHHHHHHhCCCCeEEEccCC-----CCHH
Confidence 6788999999999999999998642 233 2222 2333344445444433 4788876443 2344
Q ss_pred HHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEE-e-----CCCCCHHHHHHHH
Q 020423 213 QLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTL-N-----GGINTVDEVNAAL 286 (326)
Q Consensus 213 e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa-~-----GgI~s~~da~~~l 286 (326)
+.++ .++..++.|+|.+-+.... +...+ ...-++++.++.+.. ++||+. | |--.+++.+.++.
T Consensus 83 ~ai~-la~~A~~~Gadavlv~~P~--y~~~s-------~~~l~~~f~~va~a~-~lPiilYn~P~~tg~~l~~~~~~~La 151 (297)
T 2rfg_A 83 EAVR-YAQHAQQAGADAVLCVAGY--YNRPS-------QEGLYQHFKMVHDAI-DIPIIVYNIPPRAVVDIKPETMARLA 151 (297)
T ss_dssp HHHH-HHHHHHHHTCSEEEECCCT--TTCCC-------HHHHHHHHHHHHHHC-SSCEEEEECHHHHSCCCCHHHHHHHH
T ss_pred HHHH-HHHHHHhcCCCEEEEcCCC--CCCCC-------HHHHHHHHHHHHHhc-CCCEEEEeCccccCCCCCHHHHHHHH
Confidence 5555 3556678999999886422 11100 011244555666554 788765 3 4445777777765
Q ss_pred H
Q 020423 287 R 287 (326)
Q Consensus 287 ~ 287 (326)
+
T Consensus 152 ~ 152 (297)
T 2rfg_A 152 A 152 (297)
T ss_dssp T
T ss_pred c
Confidence 4
|
| >3q94_A Fructose-bisphosphate aldolase, class II; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta barrel; HET: 13P; 2.30A {Bacillus anthracis} SCOP: c.1.10.0 | Back alignment and structure |
|---|
Probab=91.04 E-value=4.5 Score=36.42 Aligned_cols=149 Identities=11% Similarity=0.139 Sum_probs=91.6
Q ss_pred CCCcEEEEecCC-CHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEe
Q 020423 123 EQHPIVLQIGGS-NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKC 201 (326)
Q Consensus 123 ~~~piivQL~g~-~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~ 201 (326)
.+-|++++|-|. +.+ ..+++.++||+-|-+-.+. -.++.+.+...++++...+ .|+.|-.-+
T Consensus 79 ~~VPValHlDHg~~~e----~i~~ai~~GFtSVMiDgS~------------~p~eeNi~~Tk~vv~~ah~-~gvsVEaEl 141 (288)
T 3q94_A 79 ITVPVAIHLDHGSSFE----KCKEAIDAGFTSVMIDASH------------HPFEENVETTKKVVEYAHA-RNVSVEAEL 141 (288)
T ss_dssp CCSCEEEEEEEECSHH----HHHHHHHHTCSEEEECCTT------------SCHHHHHHHHHHHHHHHHT-TTCEEEEEE
T ss_pred CCCcEEEECCCCCCHH----HHHHHHHcCCCeEEEeCCC------------CCHHHHHHHHHHHHHHHHH-cCCeEEEEe
Confidence 456677776443 322 2344555677777775431 1234667788888877643 355554443
Q ss_pred cc--CCCC--------CccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEE
Q 020423 202 RI--GVDD--------HDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFT 271 (326)
Q Consensus 202 r~--g~~~--------~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVI 271 (326)
-. |.++ ..+.++..+ ..++.|+|.+-++-++.. +-+. ..+.++++.++++.+.. ++|++
T Consensus 142 G~vgG~Ed~~~~~~~~yT~Peea~~----Fv~~TgvD~LAvaiGt~H-G~Y~-----~~p~Ld~~~L~~I~~~v-~vpLV 210 (288)
T 3q94_A 142 GTVGGQEDDVIAEGVIYADPAECKH----LVEATGIDCLAPALGSVH-GPYK-----GEPNLGFAEMEQVRDFT-GVPLV 210 (288)
T ss_dssp SBCBCSCSSCGGGGCBCCCHHHHHH----HHHHHCCSEEEECSSCBS-SCCS-----SSCCCCHHHHHHHHHHH-CSCEE
T ss_pred eeeccccCCcCCccccCCCHHHHHH----HHHHHCCCEEEEEcCccc-CCcC-----CCCccCHHHHHHHHHhc-CCCEE
Confidence 21 2222 123555544 345679999999866541 1111 11456789998887765 89999
Q ss_pred EeCCCCCHH-HHHHHHHhCCChhhhhHHH
Q 020423 272 LNGGINTVD-EVNAALRKGAHHVMVGRAA 299 (326)
Q Consensus 272 a~GgI~s~~-da~~~l~~GaD~V~iGRal 299 (326)
.=||-..++ ++.++++.|+.=|-+++-+
T Consensus 211 lHGgSG~~~e~i~~ai~~Gv~KiNi~Tdl 239 (288)
T 3q94_A 211 LHGGTGIPTADIEKAISLGTSKINVNTEN 239 (288)
T ss_dssp ECCCTTCCHHHHHHHHHTTEEEEEECHHH
T ss_pred EeCCCCCCHHHHHHHHHcCCeEEEEChHH
Confidence 999877664 5888999997777777665
|
| >2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A | Back alignment and structure |
|---|
Probab=91.01 E-value=3.9 Score=36.99 Aligned_cols=126 Identities=12% Similarity=0.101 Sum_probs=75.1
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC--CCcEEEEeccCCCCCccHH
Q 020423 135 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYN 212 (326)
Q Consensus 135 ~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~--~~pv~vK~r~g~~~~~~~~ 212 (326)
+.+.+.+.+++..+.|.|+|-++.. +++ +.+| ..+.-.++++.+++.+ ..||.+.+.. .+..
T Consensus 30 D~~~l~~lv~~li~~Gv~Gl~v~Gt--------TGE-~~~L--s~eEr~~v~~~~~~~~~grvpViaGvg~-----~~t~ 93 (303)
T 2wkj_A 30 DKASLRRLVQFNIQQGIDGLYVGGS--------TGE-AFVQ--SLSEREQVLEIVAEEAKGKIKLIAHVGC-----VSTA 93 (303)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEESST--------TTT-GGGS--CHHHHHHHHHHHHHHHTTTSEEEEECCC-----SSHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEECee--------ccC-hhhC--CHHHHHHHHHHHHHHhCCCCcEEEecCC-----CCHH
Confidence 6788999999999999999999642 233 2222 2333344455444433 4788876433 1344
Q ss_pred HHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCC-ceEEE-e-----CCCCCHHHHHHH
Q 020423 213 QLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPD-LTFTL-N-----GGINTVDEVNAA 285 (326)
Q Consensus 213 e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~-iPVIa-~-----GgI~s~~da~~~ 285 (326)
+.++ .++..++.|+|.+-+.... +...+ ...-++++.++.+.. + +||+. | |--.+++.+.++
T Consensus 94 ~ai~-la~~A~~~Gadavlv~~P~--y~~~s-------~~~l~~~f~~va~a~-~~lPiilYn~P~~tg~~l~~~~~~~L 162 (303)
T 2wkj_A 94 ESQQ-LAASAKRYGFDAVSAVTPF--YYPFS-------FEEHCDHYRAIIDSA-DGLPMVVYNIPALSGVKLTLDQINTL 162 (303)
T ss_dssp HHHH-HHHHHHHHTCSEEEEECCC--SSCCC-------HHHHHHHHHHHHHHH-TTCCEEEEECHHHHCCCCCHHHHHHH
T ss_pred HHHH-HHHHHHhCCCCEEEecCCC--CCCCC-------HHHHHHHHHHHHHhC-CCCCEEEEeCccccCCCCCHHHHHHH
Confidence 5555 3555678999999886432 11100 011244556666554 5 89866 3 434588888777
Q ss_pred HH
Q 020423 286 LR 287 (326)
Q Consensus 286 l~ 287 (326)
.+
T Consensus 163 a~ 164 (303)
T 2wkj_A 163 VT 164 (303)
T ss_dssp HT
T ss_pred hc
Confidence 54
|
| >1zco_A 2-dehydro-3-deoxyphosphoheptonate aldolase; arabino-heptulosonate, synthase, shikimate, DAHP, DAH7P, DAH DAH7PS, lyase; HET: PEP; 2.25A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=90.99 E-value=6.1 Score=34.99 Aligned_cols=116 Identities=11% Similarity=0.101 Sum_probs=74.3
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHH
Q 020423 135 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQL 214 (326)
Q Consensus 135 ~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~ 214 (326)
+.+...+.+++++++|+|.|-...--|.+. .||-.=. .+.-.+++..+++..|+|+..- + -+..++
T Consensus 35 ~~e~a~~~a~~l~~~Ga~~vk~~~fkprts-----~~~~~g~--~~egl~~l~~~~~~~Gl~~~te--~--~d~~~~--- 100 (262)
T 1zco_A 35 SREQIMKVAEFLAEVGIKVLRGGAFKPRTS-----PYSFQGY--GEKALRWMREAADEYGLVTVTE--V--MDTRHV--- 100 (262)
T ss_dssp CHHHHHHHHHHHHHTTCCEEECBSSCCCSS-----TTSCCCC--THHHHHHHHHHHHHHTCEEEEE--C--CCGGGH---
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEecccCCC-----cccccCc--cHHHHHHHHHHHHHcCCcEEEe--e--CCHHhH---
Confidence 678888999999999999988765445322 1221100 1233345555566778888653 1 122222
Q ss_pred HHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCC-CHHHHHHHHH
Q 020423 215 CDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGIN-TVDEVNAALR 287 (326)
Q Consensus 215 ~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~-s~~da~~~l~ 287 (326)
+ .+++. +|++-|.+++. .++.++.++.+ .+.||+..-|.. +.+++..+++
T Consensus 101 -~----~l~~~-vd~~kIga~~~---------------~n~~ll~~~a~--~~kPV~lk~G~~~t~~e~~~Av~ 151 (262)
T 1zco_A 101 -E----LVAKY-SDILQIGARNS---------------QNFELLKEVGK--VENPVLLKRGMGNTIQELLYSAE 151 (262)
T ss_dssp -H----HHHHH-CSEEEECGGGT---------------TCHHHHHHHTT--SSSCEEEECCTTCCHHHHHHHHH
T ss_pred -H----HHHhh-CCEEEECcccc---------------cCHHHHHHHHh--cCCcEEEecCCCCCHHHHHHHHH
Confidence 2 22345 89999887653 12556666654 489999999987 9999888775
|
| >3vav_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; structural genomics, seattle structural genomics center for infectious disease; 1.80A {Burkholderia thailandensis} SCOP: c.1.12.8 PDB: 3ez4_A | Back alignment and structure |
|---|
Probab=90.95 E-value=2 Score=38.48 Aligned_cols=155 Identities=11% Similarity=0.090 Sum_probs=88.3
Q ss_pred CCChHHHHHHHHHcCCCcEEEecceeec-ccccccc---chhhhhh----c-CCC-CCcEEEEec-C--CCHHHHHHHHH
Q 020423 78 DWTDNHYRTLARLISKHAWLYTEMLAAE-TIIYQQG---NLDRFLA----F-SPE-QHPIVLQIG-G--SNLDNLAKATE 144 (326)
Q Consensus 78 ~~s~~~~r~~~~~~Gg~gli~te~~~~~-~~~~~~~---~~~~~~~----~-~~~-~~piivQL~-g--~~~~~f~~aA~ 144 (326)
+.-|...+.++.+.| +..+.++..... -+.+.+. ..+.++. + ... ..|+++-+= | .++++..+.+.
T Consensus 35 tayDa~sA~l~e~aG-~d~ilvGdSl~~~~lG~~dt~~vtldem~~h~~aV~r~~~~~~vvaD~pfgsY~s~~~a~~~a~ 113 (275)
T 3vav_A 35 TCYDASFAALLDRAN-VDVQLIGDSLGNVLQGQTTTLPVTLDDIAYHTACVARAQPRALIVADLPFGTYGTPADAFASAV 113 (275)
T ss_dssp ECCSHHHHHHHHHTT-CSEEEECTTHHHHTTCCSSSTTCCHHHHHHHHHHHHHTCCSSEEEEECCTTSCSSHHHHHHHHH
T ss_pred eCcCHHHHHHHHHcC-CCEEEECcHHHHHHcCCCCCCccCHHHHHHHHHHHHhcCCCCCEEEecCCCCCCCHHHHHHHHH
Confidence 556777777766665 888877732211 1112221 1122221 1 122 356787763 3 47888888888
Q ss_pred HHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEecc---------CC----CCCccH
Q 020423 145 LANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRI---------GV----DDHDSY 211 (326)
Q Consensus 145 ~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~---------g~----~~~~~~ 211 (326)
++.++|+++|.|--+ . ...+.++++++ .++|+.--+.+ ++ .+.+..
T Consensus 114 rl~kaGa~aVklEdg--------------~------~~~~~i~~l~~-~GIpv~gHlgltPq~~~~~gg~~vqgrt~~~a 172 (275)
T 3vav_A 114 KLMRAGAQMVKFEGG--------------E------WLAETVRFLVE-RAVPVCAHVGLTPQSVHAFGGFKVQGKTEAGA 172 (275)
T ss_dssp HHHHTTCSEEEEECC--------------G------GGHHHHHHHHH-TTCCEEEEEESCGGGHHHHC---CCCCSHHHH
T ss_pred HHHHcCCCEEEECCc--------------h------hHHHHHHHHHH-CCCCEEEecCCCceEEeccCCeEEEcCCHHHH
Confidence 888889999998532 0 12445555544 36777533221 11 111224
Q ss_pred HHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeC
Q 020423 212 NQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNG 274 (326)
Q Consensus 212 ~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~G 274 (326)
+++++. ++.++++|+|.|.+.+-. -+..+++.++. ++|+|+-|
T Consensus 173 ~~~i~r-A~a~~eAGA~~ivlE~vp------------------~~~a~~It~~l-~iP~igIG 215 (275)
T 3vav_A 173 AQLLRD-ARAVEEAGAQLIVLEAVP------------------TLVAAEVTREL-SIPTIGIG 215 (275)
T ss_dssp HHHHHH-HHHHHHHTCSEEEEESCC------------------HHHHHHHHHHC-SSCEEEES
T ss_pred HHHHHH-HHHHHHcCCCEEEecCCC------------------HHHHHHHHHhC-CCCEEEEc
Confidence 455553 456788999999986521 23456666664 89998765
|
| >3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A* 3tdf_A 3u8g_A 3uqn_A 4dxv_A | Back alignment and structure |
|---|
Probab=90.93 E-value=2.8 Score=37.70 Aligned_cols=126 Identities=14% Similarity=0.102 Sum_probs=75.4
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC--CCcEEEEeccCCCCCccHH
Q 020423 135 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYN 212 (326)
Q Consensus 135 ~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~--~~pv~vK~r~g~~~~~~~~ 212 (326)
+.+.+.+..++..+.|.|++-++.. +++ +.+| ..+.-.++++.+.+.+ ..||.+.+.. .+..
T Consensus 20 D~~~l~~lv~~li~~Gv~gl~~~Gt--------tGE-~~~L--s~~Er~~v~~~~~~~~~gr~pviaGvg~-----~~t~ 83 (291)
T 3tak_A 20 DWKSLEKLVEWHIEQGTNSIVAVGT--------TGE-ASTL--SMEEHTQVIKEIIRVANKRIPIIAGTGA-----NSTR 83 (291)
T ss_dssp CHHHHHHHHHHHHHHTCCEEEESST--------TTT-GGGS--CHHHHHHHHHHHHHHHTTSSCEEEECCC-----SSHH
T ss_pred CHHHHHHHHHHHHHCCCCEEEECcc--------ccc-cccC--CHHHHHHHHHHHHHHhCCCCeEEEeCCC-----CCHH
Confidence 6788999999999999999988642 233 2222 2333344555544433 4788886433 2345
Q ss_pred HHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEE------eCCCCCHHHHHHHH
Q 020423 213 QLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTL------NGGINTVDEVNAAL 286 (326)
Q Consensus 213 e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa------~GgI~s~~da~~~l 286 (326)
+.++ .++..++.|+|.+-+.... +...+ ...-++++.++.+.. ++||+. .|---+++.+.++.
T Consensus 84 ~ai~-la~~a~~~Gadavlv~~P~--y~~~~-------~~~l~~~f~~ia~a~-~lPiilYn~P~~tg~~l~~~~~~~La 152 (291)
T 3tak_A 84 EAIE-LTKAAKDLGADAALLVTPY--YNKPT-------QEGLYQHYKAIAEAV-ELPLILYNVPGRTGVDLSNDTAVRLA 152 (291)
T ss_dssp HHHH-HHHHHHHHTCSEEEEECCC--SSCCC-------HHHHHHHHHHHHHHC-CSCEEEEECHHHHSCCCCHHHHHHHT
T ss_pred HHHH-HHHHHHhcCCCEEEEcCCC--CCCCC-------HHHHHHHHHHHHHhc-CCCEEEEecccccCCCCCHHHHHHHH
Confidence 5555 3556678999999886432 11100 011245566666664 899865 25556778777765
Q ss_pred H
Q 020423 287 R 287 (326)
Q Consensus 287 ~ 287 (326)
+
T Consensus 153 ~ 153 (291)
T 3tak_A 153 E 153 (291)
T ss_dssp T
T ss_pred c
Confidence 4
|
| >3n9r_A Fructose-bisphosphate aldolase; FBP aldolase, class II, inhibitor, lyase; HET: TD3; 1.80A {Helicobacter pylori} SCOP: c.1.10.0 PDB: 3c52_A* 3c56_A* 3c4u_A* 3n9s_A* | Back alignment and structure |
|---|
Probab=90.88 E-value=2.9 Score=38.03 Aligned_cols=151 Identities=12% Similarity=0.216 Sum_probs=90.4
Q ss_pred CCCcEEEEecCC-CHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEe
Q 020423 123 EQHPIVLQIGGS-NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKC 201 (326)
Q Consensus 123 ~~~piivQL~g~-~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~ 201 (326)
.+-|++++|-|. +. +..+++.++||+-|-+-.+.- .++.+.+...++++...+ .|+.|-.-+
T Consensus 73 ~~VPValHLDHg~~~----e~~~~ai~~GFtSVMiDgS~~------------p~eeNi~~Tk~vv~~ah~-~gvsVEaEL 135 (307)
T 3n9r_A 73 PHIPVALHLDHGTTF----ESCEKAVKAGFTSVMIDASHH------------AFEENLELTSKVVKMAHN-AGVSVEAEL 135 (307)
T ss_dssp TTSCEEEEEEEECSH----HHHHHHHHHTCSEEEECCTTS------------CHHHHHHHHHHHHHHHHH-TTCEEEEEE
T ss_pred CCCcEEEECCCCCCH----HHHHHHHHhCCCcEEEECCCC------------CHHHHHHHHHHHHHHHHH-cCCeEEEEe
Confidence 456888888543 33 333445677888888864311 234567788888887654 355544433
Q ss_pred cc--CCCC----------CccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCce
Q 020423 202 RI--GVDD----------HDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLT 269 (326)
Q Consensus 202 r~--g~~~----------~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iP 269 (326)
-. |.++ ..+.++..+| .++.|+|.+-++-++.. +-+.. +..+.++++.++++.+ .+++|
T Consensus 136 G~igG~Ed~~~~~~~~~~yT~Peea~~F----v~~TgvD~LAvaiGt~H-G~Yk~---~~~p~Ld~~~L~~I~~-~~~~P 206 (307)
T 3n9r_A 136 GRLMGIEDNISVDEKDAVLVNPKEAEQF----VKESQVDYLAPAIGTSH-GAFKF---KGEPKLDFERLQEVKR-LTNIP 206 (307)
T ss_dssp SCCCCC----------CCSCCHHHHHHH----HHHHCCSEEEECSSCCS-SSBCC---SSSCCCCHHHHHHHHH-HHCSC
T ss_pred eeeccccCCcccccccccCCCHHHHHHH----HHHHCCCEEEEecCCcc-cccCC---CCCCccCHHHHHHHHh-cCCCC
Confidence 21 1111 1235555444 44579999999866541 11110 0124567888888854 45899
Q ss_pred EEEeCCC---------------------C-CHHHHHHHHHhCCChhhhhHHH
Q 020423 270 FTLNGGI---------------------N-TVDEVNAALRKGAHHVMVGRAA 299 (326)
Q Consensus 270 VIa~GgI---------------------~-s~~da~~~l~~GaD~V~iGRal 299 (326)
++.=||- . +.+++.++++.|+.=|-+++-+
T Consensus 207 LVlHGgS~vp~~~~~~~~~~gg~~~~~~G~p~e~i~~ai~~GV~KiNi~Tdl 258 (307)
T 3n9r_A 207 LVLHGASAIPDNVRKSYLDAGGDLKGSKGVPFEFLQESVKGGINKVNTDTDL 258 (307)
T ss_dssp EEESSCCCCCHHHHHHHHHTTCCCTTCBCCCHHHHHHHHHTTEEEEEECHHH
T ss_pred eEEeCCCCcchHHHHHHHHhcCccCCCCCCCHHHHHHHHHcCceEEEechHH
Confidence 9999976 3 3466888888887666666554
|
| >3eb2_A Putative dihydrodipicolinate synthetase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2., structural genomics; HET: PGE; 2.04A {Rhodopseudomonas palustris} SCOP: c.1.10.0 | Back alignment and structure |
|---|
Probab=90.87 E-value=8.8 Score=34.54 Aligned_cols=69 Identities=14% Similarity=0.171 Sum_probs=53.1
Q ss_pred CCCCcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEe
Q 020423 122 PEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKC 201 (326)
Q Consensus 122 ~~~~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~ 201 (326)
....|+++...+.+.++-.+.++.++++|+|++-+- .|..+ . ...+-+.+-.++|.++++.|+.+=-
T Consensus 71 ~grvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~--~P~y~-------~----~~~~~l~~~f~~va~a~~lPiilYn 137 (300)
T 3eb2_A 71 QRRVPVVAGVASTSVADAVAQAKLYEKLGADGILAI--LEAYF-------P----LKDAQIESYFRAIADAVEIPVVIYT 137 (300)
T ss_dssp TTSSCBEEEEEESSHHHHHHHHHHHHHHTCSEEEEE--ECCSS-------C----CCHHHHHHHHHHHHHHCSSCEEEEE
T ss_pred CCCCcEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEc--CCCCC-------C----CCHHHHHHHHHHHHHHCCCCEEEEE
Confidence 345689999998999999999999999999999884 34321 1 2356677888888888899998864
Q ss_pred cc
Q 020423 202 RI 203 (326)
Q Consensus 202 r~ 203 (326)
-+
T Consensus 138 ~P 139 (300)
T 3eb2_A 138 NP 139 (300)
T ss_dssp CT
T ss_pred Cc
Confidence 33
|
| >3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, diaminopimelate biosynthesis, lyase, schiff B; 1.45A {Staphylococcus aureus} SCOP: c.1.10.0 PDB: 3di1_A 3di0_A | Back alignment and structure |
|---|
Probab=90.85 E-value=8.7 Score=34.42 Aligned_cols=137 Identities=16% Similarity=0.175 Sum_probs=82.6
Q ss_pred CCCCcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEe
Q 020423 122 PEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKC 201 (326)
Q Consensus 122 ~~~~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~ 201 (326)
....|+++...+.+.++-.+.++.++++|+|++-+- .|.-+ . ...+-+.+-.++|.++++.|+.+=-
T Consensus 69 ~grvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~--~P~y~-~----------~~~~~l~~~f~~ia~a~~lPiilYn 135 (292)
T 3daq_A 69 DKRVPVIAGTGTNDTEKSIQASIQAKALGADAIMLI--TPYYN-K----------TNQRGLVKHFEAIADAVKLPVVLYN 135 (292)
T ss_dssp TTSSCEEEECCCSCHHHHHHHHHHHHHHTCSEEEEE--CCCSS-C----------CCHHHHHHHHHHHHHHHCSCEEEEE
T ss_pred CCCCcEEEeCCcccHHHHHHHHHHHHHcCCCEEEEC--CCCCC-C----------CCHHHHHHHHHHHHHhCCCCEEEEe
Confidence 345799999988899999999999999999999885 34321 1 1245677777788777899998753
Q ss_pred c---cCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCC--ceEEEeCCC
Q 020423 202 R---IGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPD--LTFTLNGGI 276 (326)
Q Consensus 202 r---~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~--iPVIa~GgI 276 (326)
- .|.+- +.+. +.++.+.-.+-.|--+. .++..+.++++...+ +. +.+|.
T Consensus 136 ~P~~tg~~l--~~~~----~~~La~~pnivgiK~ss------------------gd~~~~~~~~~~~~~~~f~-v~~G~- 189 (292)
T 3daq_A 136 VPSRTNMTI--EPET----VEILSQHPYIVALKDAT------------------NDFEYLEEVKKRIDTNSFA-LYSGN- 189 (292)
T ss_dssp CHHHHSCCC--CHHH----HHHHHTSTTEEEEEECC------------------CCHHHHHHHHTTSCTTTSE-EEESC-
T ss_pred cccccCCCC--CHHH----HHHHhcCCCEEEEEeCC------------------CCHHHHHHHHHHCCCCCEE-EEECC-
Confidence 2 23222 2222 23333322333332221 124555566655432 43 44554
Q ss_pred CCHHHHHHHHHhCCChhhhhHHH
Q 020423 277 NTVDEVNAALRKGAHHVMVGRAA 299 (326)
Q Consensus 277 ~s~~da~~~l~~GaD~V~iGRal 299 (326)
-+.+...+..|++++..+.+-
T Consensus 190 --d~~~~~~l~~G~~G~is~~~n 210 (292)
T 3daq_A 190 --DDNVVEYYQRGGQGVISVIAN 210 (292)
T ss_dssp --GGGHHHHHHTTCCEEEESGGG
T ss_pred --HHHHHHHHhcCCCEEEeCHHH
Confidence 133556677888888766553
|
| >1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=90.81 E-value=3.2 Score=37.24 Aligned_cols=142 Identities=11% Similarity=0.043 Sum_probs=79.3
Q ss_pred HHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEec--cCCCC--CccHHHHHH
Q 020423 141 KATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCR--IGVDD--HDSYNQLCD 216 (326)
Q Consensus 141 ~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r--~g~~~--~~~~~e~~~ 216 (326)
+..+++.++|++.|-+-.+....... ...+-+.+...+.+.++++..++. |..+..-+. .+.++ ..+.+++.+
T Consensus 83 ~~i~~a~~~G~~~V~i~~~~S~~h~~--~~~~~~~~e~~~~~~~~v~~a~~~-G~~V~~~l~~~~~~e~~~~~~~~~~~~ 159 (295)
T 1ydn_A 83 KGYEAAAAAHADEIAVFISASEGFSK--ANINCTIAESIERLSPVIGAAIND-GLAIRGYVSCVVECPYDGPVTPQAVAS 159 (295)
T ss_dssp HHHHHHHHTTCSEEEEEEESCHHHHH--HHTSSCHHHHHHHHHHHHHHHHHT-TCEEEEEEECSSEETTTEECCHHHHHH
T ss_pred HHHHHHHHCCCCEEEEEEecCHHHHH--HHcCCCHHHHHHHHHHHHHHHHHc-CCeEEEEEEEEecCCcCCCCCHHHHHH
Confidence 44567778999998885422110101 111223334556666677766553 666653333 32222 234566666
Q ss_pred HHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeC--CCC-CHHHHHHHHHhCCChh
Q 020423 217 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNG--GIN-TVDEVNAALRKGAHHV 293 (326)
Q Consensus 217 ~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~G--gI~-s~~da~~~l~~GaD~V 293 (326)
+ .+.+.+.|+|.|.+.... |.. .|....+.+..+++..+++|+..-+ +-. ....+.++++.|++.|
T Consensus 160 ~-~~~~~~~G~d~i~l~Dt~----G~~------~P~~~~~lv~~l~~~~~~~~l~~H~Hn~~Gla~an~l~Ai~aG~~~v 228 (295)
T 1ydn_A 160 V-TEQLFSLGCHEVSLGDTI----GRG------TPDTVAAMLDAVLAIAPAHSLAGHYHDTGGRALDNIRVSLEKGLRVF 228 (295)
T ss_dssp H-HHHHHHHTCSEEEEEETT----SCC------CHHHHHHHHHHHHTTSCGGGEEEEEBCTTSCHHHHHHHHHHHTCCEE
T ss_pred H-HHHHHhcCCCEEEecCCC----CCc------CHHHHHHHHHHHHHhCCCCeEEEEECCCcchHHHHHHHHHHhCCCEE
Confidence 4 444557899999997422 211 1223356777777665448887655 222 2345677788898877
Q ss_pred hhh
Q 020423 294 MVG 296 (326)
Q Consensus 294 ~iG 296 (326)
-..
T Consensus 229 d~s 231 (295)
T 1ydn_A 229 DAS 231 (295)
T ss_dssp EEB
T ss_pred Eec
Confidence 654
|
| >1twd_A Copper homeostasis protein CUTC; TIM-like protein, structural genomics, PSI, protein structure initiative; 1.70A {Shigella flexneri} SCOP: c.1.30.1 PDB: 1x7i_A 1x8c_A | Back alignment and structure |
|---|
Probab=90.80 E-value=5.3 Score=35.28 Aligned_cols=78 Identities=12% Similarity=0.084 Sum_probs=46.5
Q ss_pred HHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCC--C--ccHHHHHH
Q 020423 141 KATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDD--H--DSYNQLCD 216 (326)
Q Consensus 141 ~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~--~--~~~~e~~~ 216 (326)
+.|..|++.|+|-|||..+-.. || +-.... +++.+++.+++||-+=+|+-..+ + .+++.+.+
T Consensus 12 ~~a~~A~~~GAdRIELc~~L~~---------GG-lTPS~g----~i~~~~~~~~ipv~vMIRPR~GdF~Ys~~E~~~M~~ 77 (256)
T 1twd_A 12 ECALTAQQNGADRVELCAAPKE---------GG-LTPSLG----VLKSVRQRVTIPVHPIIRPRGGDFCYSDGEFAAILE 77 (256)
T ss_dssp HHHHHHHHTTCSEEEECBCGGG---------TC-BCCCHH----HHHHHHHHCCSCEEEBCCSSSSCSCCCHHHHHHHHH
T ss_pred HHHHHHHHcCCCEEEEcCCccc---------CC-CCCCHH----HHHHHHHHcCCceEEEECCCCCCCcCCHHHHHHHHH
Confidence 4567788899999999643111 11 111122 34555677789998888872222 1 23444444
Q ss_pred HHHHHhhhCCccEEEEe
Q 020423 217 FIYKVSSLSPTRHFIIH 233 (326)
Q Consensus 217 ~ia~~le~~Gvd~I~v~ 233 (326)
.+. .+.+.|+|.+.+-
T Consensus 78 Di~-~~~~~GadGvV~G 93 (256)
T 1twd_A 78 DVR-TVRELGFPGLVTG 93 (256)
T ss_dssp HHH-HHHHTTCSEEEEC
T ss_pred HHH-HHHHcCCCEEEEe
Confidence 343 4567999999874
|
| >1gvf_A Tagatose-bisphosphate aldolase AGAY; lyase, zinc.; HET: PGH; 1.45A {Escherichia coli} SCOP: c.1.10.2 | Back alignment and structure |
|---|
Probab=90.74 E-value=2.4 Score=38.23 Aligned_cols=149 Identities=13% Similarity=0.154 Sum_probs=90.8
Q ss_pred CCCcEEEEecCC-CHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEe
Q 020423 123 EQHPIVLQIGGS-NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKC 201 (326)
Q Consensus 123 ~~~piivQL~g~-~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~ 201 (326)
.+-|+++.|-|. +. +..+++.++||.-|-+-.+. . .++.+.+...++++...+ .|+.|-.-+
T Consensus 73 ~~VPValHlDHg~~~----e~i~~ai~~GFtSVMiDgS~-l-----------p~eeNi~~Tk~vv~~ah~-~gvsVEaEl 135 (286)
T 1gvf_A 73 YNMPLALHLDHHESL----DDIRRKVHAGVRSAMIDGSH-F-----------PFAENVKLVKSVVDFCHS-QDCSVEAEL 135 (286)
T ss_dssp TTSCBEEEEEEECCH----HHHHHHHHTTCCEEEECCTT-S-----------CHHHHHHHHHHHHHHHHH-TTCEEEEEE
T ss_pred CCCcEEEEcCCCCCH----HHHHHHHHcCCCeEEECCCC-C-----------CHHHHHHHHHHHHHHHHH-cCCEEEEEE
Confidence 345666666432 32 23444566788888775431 1 234667888888887654 355544443
Q ss_pred cc-CC-CC----------CccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCce
Q 020423 202 RI-GV-DD----------HDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLT 269 (326)
Q Consensus 202 r~-g~-~~----------~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iP 269 (326)
-. |. ++ ..+.++..+ ..++.|+|.+-++-++.. +-+. ..+.++++.++++.+.. ++|
T Consensus 136 G~vgg~ed~~~~~~~~~~~T~Peea~~----Fv~~TgvD~LAvaiGt~H-G~Y~-----~~p~Ld~~~L~~I~~~~-~vp 204 (286)
T 1gvf_A 136 GRLGGVEDDMSVDAESAFLTDPQEAKR----FVELTGVDSLAVAIGTAH-GLYS-----KTPKIDFQRLAEIREVV-DVP 204 (286)
T ss_dssp SCCC-----------CCSSCCHHHHHH----HHHHHCCSEEEECSSCCS-SCCS-----SCCCCCHHHHHHHHHHC-CSC
T ss_pred eeccCcccCcccccccccCCCHHHHHH----HHHHHCCCEEEeecCccc-cCcC-----CCCccCHHHHHHHHHhc-CCC
Confidence 21 11 11 123455444 445689999999866541 1111 12457789999988765 899
Q ss_pred EEEeCCCCCH-HHHHHHHHhCCChhhhhHHH
Q 020423 270 FTLNGGINTV-DEVNAALRKGAHHVMVGRAA 299 (326)
Q Consensus 270 VIa~GgI~s~-~da~~~l~~GaD~V~iGRal 299 (326)
++.=||=..+ +++.++++.|+.=|=+++.+
T Consensus 205 LVlHGgSG~~~e~i~~ai~~Gv~KiNi~Tdl 235 (286)
T 1gvf_A 205 LVLHGASDVPDEFVRRTIELGVTKVNVATEL 235 (286)
T ss_dssp EEECCCTTCCHHHHHHHHHTTEEEEEECHHH
T ss_pred EEEECCCCCCHHHHHHHHHCCCeEEEEChHH
Confidence 9999987655 45888999997777776665
|
| >3ijl_A Muconate cycloisomerase; enolase superfamily, dipeptide epimerase, L-Pro-D-Glu, nonpr binding; HET: DGL; 1.50A {Bacteroides thetaiotaomicron} PDB: 3iji_A* 3ijq_A* | Back alignment and structure |
|---|
Probab=90.70 E-value=1.3 Score=40.69 Aligned_cols=121 Identities=12% Similarity=0.115 Sum_probs=72.0
Q ss_pred cCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccH
Q 020423 132 GGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSY 211 (326)
Q Consensus 132 ~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~ 211 (326)
...+++++.+.++...+ ||..+-+..|.. . -.+.+++||+..+..+.+-...+|. +.
T Consensus 131 ~~~~~e~~~~~a~~~~~-g~~~~K~Kvg~~---------------~----d~~~v~avR~~~~~~l~vDaN~~~t---~~ 187 (338)
T 3ijl_A 131 GIDTPDVVRAKTKECAG-LFNILKVKLGRD---------------N----DKEMIETIRSVTDLPIAVDANQGWK---DR 187 (338)
T ss_dssp CCCCHHHHHHHHHHHHT-TCSSEEEECSSS---------------C----HHHHHHHHHTTCCCCEEEECTTCCC---CH
T ss_pred eCCCHHHHHHHHHHHHh-cccEEEEecCcH---------------H----HHHHHHHHHhhcCCcEEEECcCCCC---CH
Confidence 34578989888888766 899999976421 1 2456788888877655555444442 14
Q ss_pred HHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCC
Q 020423 212 NQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAH 291 (326)
Q Consensus 212 ~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD 291 (326)
++..+ +.+.+++.++.+|. . ..++.+++.++++.++. .+||.+-=.+.+..++.+++ ..+|
T Consensus 188 ~~A~~-~~~~l~~~~i~~iE----e------------P~~~~d~~~~~~l~~~~-~ipIa~dE~~~~~~~~~~~~-~a~d 248 (338)
T 3ijl_A 188 QYALD-MIHWLKEKGIVMIE----Q------------PMPKEQLDDIAWVTQQS-PLPVFADESLQRLGDVAALK-GAFT 248 (338)
T ss_dssp HHHHH-HHHHHHHTTEEEEE----C------------CSCTTCHHHHHHHHHTC-SSCEEESTTCCSGGGTGGGB-TTBS
T ss_pred HHHHH-HHHHHhhCCCCEEE----C------------CCCCCcHHHHHHHHhcC-CCCEEECCCCCCHHHHHHHH-hhCC
Confidence 44445 34556778887764 1 11233456666666553 67776655555555554443 2344
Q ss_pred hhh
Q 020423 292 HVM 294 (326)
Q Consensus 292 ~V~ 294 (326)
.|+
T Consensus 249 ~i~ 251 (338)
T 3ijl_A 249 GIN 251 (338)
T ss_dssp EEE
T ss_pred EEE
Confidence 443
|
| >3gk0_A PNP synthase, pyridoxine 5'-phosphate synthase; decode, ssgcid, niaid, SBRI, cytoplasm, pyridoxine biosynthesis, transferase; HET: DXP; 2.28A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=90.68 E-value=0.7 Score=41.10 Aligned_cols=160 Identities=17% Similarity=0.114 Sum_probs=93.7
Q ss_pred cEEEEec---------CCCHHHHHHHHHHHHHCCCCEEEecCC-------------------------------------
Q 020423 126 PIVLQIG---------GSNLDNLAKATELANAYNYDEINLNCG------------------------------------- 159 (326)
Q Consensus 126 piivQL~---------g~~~~~f~~aA~~a~~aG~d~Iein~g------------------------------------- 159 (326)
.+.||+- +....+..++|..++++|+|+|.+|.-
T Consensus 33 ~LgVNIDhVAtLRnARg~~~PDpv~aA~~ae~aGAdGITvHlReDrRHI~d~Dv~~L~~~i~t~lNlEma~t~emi~ial 112 (278)
T 3gk0_A 33 DLGVNIDHVATLRNARGTAYPDPVRAALAAEDAGADAITLHLREDRRHIVDADVRTLRPRVKTRMNLECAVTPEMLDIAC 112 (278)
T ss_dssp EEEEECHHHHHHHHHHSSSCSCHHHHHHHHHHTTCSEEEEECCTTCSSSCHHHHHHHHHHCSSCEEEEECSSHHHHHHHH
T ss_pred EEEechHhhhhhhccCCCCCCCHHHHHHHHHHcCCCEEEeccCCCcccCCHHHHHHHHHHcCCCEEeecCCCHHHHHHHH
Confidence 4677773 223345778899999999999999753
Q ss_pred ---------CCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEE
Q 020423 160 ---------CPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHF 230 (326)
Q Consensus 160 ---------~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I 230 (326)
-|......+-+-|-++..+.+++.++++.+++ .|+.+++-+-+. .+. ++ ...+.|+|+|
T Consensus 113 ~~kP~~vtLVPEkreE~TTegGlDv~~~~~~L~~~i~~L~~-~GIrVSLFIDpd------~~q-I~----aA~~~GAd~I 180 (278)
T 3gk0_A 113 EIRPHDACLVPEKRSELTTEGGLDVVGHFDAVRAACKQLAD-AGVRVSLFIDPD------EAQ-IR----AAHETGAPVI 180 (278)
T ss_dssp HHCCSEEEECCCSGGGBCSSSSBCTTTTHHHHHHHHHHHHH-TTCEEEEEECSC------HHH-HH----HHHHHTCSEE
T ss_pred HcCCCEEEECCCCCCCcCCCcchhhhccHHHHHHHHHHHHH-CCCEEEEEeCCC------HHH-HH----HHHHhCcCEE
Confidence 12222223444466788899999999999866 578887766431 222 22 2235799999
Q ss_pred EEecCCcccCCCCcCCcCCCCCccHHHHHHH---HhcCCCceEEEeCCCCCHHHHHHHHH-hCCChhhhhHHHHhCCc
Q 020423 231 IIHSRKALLNGISPAENRTIPPLKYEYYYAL---LRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQNPW 304 (326)
Q Consensus 231 ~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i---~~~~~~iPVIa~GgI~s~~da~~~l~-~GaD~V~iGRall~dP~ 304 (326)
.+|.+..... ..... ...-++.+.+. ..+ ..+-|=+.-|+ +.+.+..+.+ -+..=|.||.+++++--
T Consensus 181 ELhTG~YA~a-~~~~~----~~~el~rl~~aA~~A~~-lGL~VnAGHGL-~y~Nv~~ia~ip~i~ElnIGHaiIa~Al 251 (278)
T 3gk0_A 181 ELHTGRYADA-HDAAE----QQREFERIATGVDAGIA-LGLKVNAGHGL-HYTNVQAIAALPGIAELNIGHAIVAHAV 251 (278)
T ss_dssp EECCHHHHTC-SSHHH----HHHHHHHHHHHHHHHHH-TTCEEEECTTC-CTTTHHHHHTCTTEEEEEECHHHHHHHH
T ss_pred EEecchhhcc-CCchh----HHHHHHHHHHHHHHHHH-cCCEEecCCCC-CHHHHHHHHhCCCCeEEecCHHHHHHHH
Confidence 9997532100 00000 00012222222 223 36777777777 4444444433 56777888888776643
|
| >3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid biosynthesis, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.1.10.0 PDB: 3ler_A* | Back alignment and structure |
|---|
Probab=90.64 E-value=9.2 Score=34.39 Aligned_cols=135 Identities=16% Similarity=0.124 Sum_probs=83.0
Q ss_pred CCcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEec-
Q 020423 124 QHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCR- 202 (326)
Q Consensus 124 ~~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r- 202 (326)
..|+++...+.+.++-.+.++.++++|+|++-+- .|..+ . ...+-+.+-.++|.++++.|+.+=--
T Consensus 77 rvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~--~P~y~-~----------~s~~~l~~~f~~va~a~~lPiilYn~P 143 (301)
T 3m5v_A 77 KVKVLAGAGSNATHEAVGLAKFAKEHGADGILSV--APYYN-K----------PTQQGLYEHYKAIAQSVDIPVLLYNVP 143 (301)
T ss_dssp SCEEEEECCCSSHHHHHHHHHHHHHTTCSEEEEE--CCCSS-C----------CCHHHHHHHHHHHHHHCSSCEEEEECH
T ss_pred CCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEc--CCCCC-C----------CCHHHHHHHHHHHHHhCCCCEEEEeCc
Confidence 5799999988899999999999999999999985 34421 1 13466777888888888999987532
Q ss_pred --cCCCCCccHHHHHHHHHHHhhh-CCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCH
Q 020423 203 --IGVDDHDSYNQLCDFIYKVSSL-SPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTV 279 (326)
Q Consensus 203 --~g~~~~~~~~e~~~~ia~~le~-~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~ 279 (326)
.|.+- +.+.+ .++.+. -.+-.|--+.+ ++..+.++++...++.| .+|. -
T Consensus 144 ~~tg~~l--~~~~~----~~La~~~pnivgiKdssg------------------d~~~~~~~~~~~~~f~v-~~G~---d 195 (301)
T 3m5v_A 144 GRTGCEI--STDTI----IKLFRDCENIYGVKEASG------------------NIDKCVDLLAHEPRMML-ISGE---D 195 (301)
T ss_dssp HHHSCCC--CHHHH----HHHHHHCTTEEEEEECSS------------------CHHHHHHHHHHCTTSEE-EECC---G
T ss_pred hhhCcCC--CHHHH----HHHHhcCCCEEEEEeCCC------------------CHHHHHHHHHhCCCeEE-EEcc---H
Confidence 23222 23222 223333 23444432221 24444455544334544 5553 1
Q ss_pred HHHHHHHHhCCChhhhhHHH
Q 020423 280 DEVNAALRKGAHHVMVGRAA 299 (326)
Q Consensus 280 ~da~~~l~~GaD~V~iGRal 299 (326)
+.+...+..|++++..+.+-
T Consensus 196 ~~~~~~l~~G~~G~is~~~n 215 (301)
T 3m5v_A 196 AINYPILSNGGKGVISVTSN 215 (301)
T ss_dssp GGHHHHHHTTCCEEEESGGG
T ss_pred HHHHHHHHcCCCEEEehHHH
Confidence 23556677888888766543
|
| >3qfe_A Putative dihydrodipicolinate synthase family PROT; seattle structural genomics center for infectious disease, S coccidioides, valley fever; 2.35A {Coccidioides immitis} | Back alignment and structure |
|---|
Probab=90.60 E-value=2.8 Score=38.23 Aligned_cols=128 Identities=10% Similarity=0.104 Sum_probs=74.6
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC--CCcEEEEeccCCCCCccHH
Q 020423 135 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYN 212 (326)
Q Consensus 135 ~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~--~~pv~vK~r~g~~~~~~~~ 212 (326)
|.+.+.+.+++..+.|.|++-++.. +++ +.+| ..+.-.++++.+.+.+ ..||.+.+.. .+..
T Consensus 30 D~~~l~~lv~~li~~Gv~gl~v~Gt--------TGE-~~~L--s~~Er~~v~~~~~~~~~grvpviaGvg~-----~~t~ 93 (318)
T 3qfe_A 30 DLASQERYYAYLARSGLTGLVILGT--------NAE-AFLL--TREERAQLIATARKAVGPDFPIMAGVGA-----HSTR 93 (318)
T ss_dssp CHHHHHHHHHHHHTTTCSEEEESSG--------GGT-GGGS--CHHHHHHHHHHHHHHHCTTSCEEEECCC-----SSHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCcc--------ccC-hhhC--CHHHHHHHHHHHHHHhCCCCcEEEeCCC-----CCHH
Confidence 6788999999999999999998642 233 2222 2333344555555443 4788886433 2344
Q ss_pred HHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEE-e------CCCCCHHHHHHH
Q 020423 213 QLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTL-N------GGINTVDEVNAA 285 (326)
Q Consensus 213 e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa-~------GgI~s~~da~~~ 285 (326)
+.++ .++..++.|+|.+-+..-..+....+ ...-++++.++.+.. ++||+. | |--.+++.+.++
T Consensus 94 ~ai~-la~~a~~~Gadavlv~~P~y~~kp~~-------~~~l~~~f~~ia~a~-~lPiilYn~P~~t~g~~l~~~~~~~L 164 (318)
T 3qfe_A 94 QVLE-HINDASVAGANYVLVLPPAYFGKATT-------PPVIKSFFDDVSCQS-PLPVVIYNFPGVCNGIDLDSDMITTI 164 (318)
T ss_dssp HHHH-HHHHHHHHTCSEEEECCCCC---CCC-------HHHHHHHHHHHHHHC-SSCEEEEECCC----CCCCHHHHHHH
T ss_pred HHHH-HHHHHHHcCCCEEEEeCCcccCCCCC-------HHHHHHHHHHHHhhC-CCCEEEEeCCcccCCCCCCHHHHHHH
Confidence 5555 34566789999998864311100000 011245566666654 788765 1 333578877777
Q ss_pred HH
Q 020423 286 LR 287 (326)
Q Consensus 286 l~ 287 (326)
.+
T Consensus 165 a~ 166 (318)
T 3qfe_A 165 AR 166 (318)
T ss_dssp HH
T ss_pred Hh
Confidence 65
|
| >3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, diaminopimelate biosynthesis, lyase, schiff B; 1.45A {Staphylococcus aureus} SCOP: c.1.10.0 PDB: 3di1_A 3di0_A | Back alignment and structure |
|---|
Probab=90.52 E-value=3 Score=37.52 Aligned_cols=126 Identities=12% Similarity=0.047 Sum_probs=75.1
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC--CCcEEEEeccCCCCCccHH
Q 020423 135 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYN 212 (326)
Q Consensus 135 ~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~--~~pv~vK~r~g~~~~~~~~ 212 (326)
+.+.+.+.+++..+.|.|++-++.. +++ +.+| ..+.-.++++.+.+.+ ..||.+.+.. .+..
T Consensus 21 D~~~l~~lv~~li~~Gv~gl~v~Gt--------tGE-~~~L--t~~Er~~v~~~~~~~~~grvpviaGvg~-----~~t~ 84 (292)
T 3daq_A 21 NLEALKAHVNFLLENNAQAIIVNGT--------TAE-SPTL--TTDEKELILKTVIDLVDKRVPVIAGTGT-----NDTE 84 (292)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEESSG--------GGT-GGGS--CHHHHHHHHHHHHHHHTTSSCEEEECCC-----SCHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEECcc--------ccc-cccC--CHHHHHHHHHHHHHHhCCCCcEEEeCCc-----ccHH
Confidence 6788999999999999999988642 233 2222 2233334444444433 4788886433 2344
Q ss_pred HHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEE------eCCCCCHHHHHHHH
Q 020423 213 QLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTL------NGGINTVDEVNAAL 286 (326)
Q Consensus 213 e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa------~GgI~s~~da~~~l 286 (326)
+.++ .++..++.|+|.+-+.... +...+ ...-++++.++.+.. ++||+. .|---+++.+.++.
T Consensus 85 ~ai~-la~~a~~~Gadavlv~~P~--y~~~~-------~~~l~~~f~~ia~a~-~lPiilYn~P~~tg~~l~~~~~~~La 153 (292)
T 3daq_A 85 KSIQ-ASIQAKALGADAIMLITPY--YNKTN-------QRGLVKHFEAIADAV-KLPVVLYNVPSRTNMTIEPETVEILS 153 (292)
T ss_dssp HHHH-HHHHHHHHTCSEEEEECCC--SSCCC-------HHHHHHHHHHHHHHH-CSCEEEEECHHHHSCCCCHHHHHHHH
T ss_pred HHHH-HHHHHHHcCCCEEEECCCC--CCCCC-------HHHHHHHHHHHHHhC-CCCEEEEecccccCCCCCHHHHHHHh
Confidence 5555 3556677899999886432 11100 011244566666554 889865 25566788877776
Q ss_pred H
Q 020423 287 R 287 (326)
Q Consensus 287 ~ 287 (326)
+
T Consensus 154 ~ 154 (292)
T 3daq_A 154 Q 154 (292)
T ss_dssp T
T ss_pred c
Confidence 5
|
| >3d0c_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI-2, structural genomics; 1.90A {Oceanobacillus iheyensis HTE831} | Back alignment and structure |
|---|
Probab=90.50 E-value=3.9 Score=37.22 Aligned_cols=124 Identities=15% Similarity=0.096 Sum_probs=74.3
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC--CCcEEEEeccCCCCCccHH
Q 020423 135 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYN 212 (326)
Q Consensus 135 ~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~--~~pv~vK~r~g~~~~~~~~ 212 (326)
|.+.+.+.+++..+.|.|+|-++.. +++ +.+| ..+.-.++++.+++.+ ..||.+.+.. +..
T Consensus 31 D~~~l~~lv~~li~~Gv~gl~v~Gt--------TGE-~~~L--s~eEr~~vi~~~~~~~~grvpViaGvg~------st~ 93 (314)
T 3d0c_A 31 DWKGLDDNVEFLLQNGIEVIVPNGN--------TGE-FYAL--TIEEAKQVATRVTELVNGRATVVAGIGY------SVD 93 (314)
T ss_dssp CHHHHHHHHHHHHHTTCSEECTTSG--------GGT-GGGS--CHHHHHHHHHHHHHHHTTSSEEEEEECS------SHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEECcc--------cCC-hhhC--CHHHHHHHHHHHHHHhCCCCeEEecCCc------CHH
Confidence 6788999999999999999988542 233 2222 2333344555544433 4788876433 233
Q ss_pred HHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEE---eCCCCCHHHHHHHHH
Q 020423 213 QLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTL---NGGINTVDEVNAALR 287 (326)
Q Consensus 213 e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa---~GgI~s~~da~~~l~ 287 (326)
+.++ .++..++.|+|.+-+.... +...+ ...-++++.++.+.. ++||+. .|- .+++.+.++.+
T Consensus 94 ~ai~-la~~A~~~Gadavlv~~P~--y~~~s-------~~~l~~~f~~va~a~-~lPiilYn~tg~-l~~~~~~~La~ 159 (314)
T 3d0c_A 94 TAIE-LGKSAIDSGADCVMIHQPV--HPYIT-------DAGAVEYYRNIIEAL-DAPSIIYFKDAH-LSDDVIKELAP 159 (314)
T ss_dssp HHHH-HHHHHHHTTCSEEEECCCC--CSCCC-------HHHHHHHHHHHHHHS-SSCEEEEECCTT-SCTHHHHHHTT
T ss_pred HHHH-HHHHHHHcCCCEEEECCCC--CCCCC-------HHHHHHHHHHHHHhC-CCCEEEEeCCCC-cCHHHHHHHHc
Confidence 4455 3556678999999886432 11100 011245566666654 799876 344 67888777654
|
| >3a5f_A Dihydrodipicolinate synthase; TIM barrel, enzyme, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; HET: KPI; 1.19A {Clostridium botulinum A} PDB: 3bi8_A* 3ird_A* | Back alignment and structure |
|---|
Probab=90.35 E-value=3.9 Score=36.67 Aligned_cols=84 Identities=12% Similarity=0.122 Sum_probs=53.4
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC--CCcEEEEeccCCCCCccH
Q 020423 134 SNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSY 211 (326)
Q Consensus 134 ~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~--~~pv~vK~r~g~~~~~~~ 211 (326)
-|.+.+.+.+++..+.|.|++-++.. +++ +.+| ..+.-.++++.+.+.+ ..||.+.+.. .+.
T Consensus 19 iD~~~l~~lv~~li~~Gv~gl~~~Gt--------tGE-~~~L--s~~Er~~v~~~~~~~~~gr~pvi~Gvg~-----~~t 82 (291)
T 3a5f_A 19 VDFDKLSELIEWHIKSKTDAIIVCGT--------TGE-ATTM--TETERKETIKFVIDKVNKRIPVIAGTGS-----NNT 82 (291)
T ss_dssp BCHHHHHHHHHHHHHTTCCEEEESSG--------GGT-GGGS--CHHHHHHHHHHHHHHHTTSSCEEEECCC-----SSH
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECcc--------ccC-hhhC--CHHHHHHHHHHHHHHhCCCCcEEEeCCc-----ccH
Confidence 36788899999999999999998642 233 2222 2333344444444433 4788876443 234
Q ss_pred HHHHHHHHHHhhhCCccEEEEec
Q 020423 212 NQLCDFIYKVSSLSPTRHFIIHS 234 (326)
Q Consensus 212 ~e~~~~ia~~le~~Gvd~I~v~~ 234 (326)
.+.++ .++..++.|+|.+-+..
T Consensus 83 ~~ai~-la~~a~~~Gadavlv~~ 104 (291)
T 3a5f_A 83 AASIA-MSKWAESIGVDGLLVIT 104 (291)
T ss_dssp HHHHH-HHHHHHHTTCSEEEEEC
T ss_pred HHHHH-HHHHHHhcCCCEEEEcC
Confidence 45555 35566789999998864
|
| >1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A* | Back alignment and structure |
|---|
Probab=90.27 E-value=3.1 Score=37.45 Aligned_cols=126 Identities=10% Similarity=0.091 Sum_probs=74.8
Q ss_pred CHHHHHHHHHHHHH-CCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC--CCcEEEEeccCCCCCccH
Q 020423 135 NLDNLAKATELANA-YNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSY 211 (326)
Q Consensus 135 ~~~~f~~aA~~a~~-aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~--~~pv~vK~r~g~~~~~~~ 211 (326)
|.+.+.+.+++..+ .|.|++-++.. +++ +.+ -..+.-.++++.+.+.+ ..||.+.+.. .+.
T Consensus 22 D~~~l~~lv~~li~~~Gv~gl~~~Gt--------tGE-~~~--Ls~~Er~~v~~~~~~~~~grvpviaGvg~-----~~t 85 (293)
T 1f6k_A 22 NEKGLRQIIRHNIDKMKVDGLYVGGS--------TGE-NFM--LSTEEKKEIFRIAKDEAKDQIALIAQVGS-----VNL 85 (293)
T ss_dssp CHHHHHHHHHHHHHTSCCSEEEESSG--------GGT-GGG--SCHHHHHHHHHHHHHHHTTSSEEEEECCC-----SCH
T ss_pred CHHHHHHHHHHHHhhCCCcEEEeCcc--------ccc-hhh--CCHHHHHHHHHHHHHHhCCCCeEEEecCC-----CCH
Confidence 67889999999999 99999999642 233 212 22333344555554433 4788776433 234
Q ss_pred HHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEE-e-----CCCCCHHHHHHH
Q 020423 212 NQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTL-N-----GGINTVDEVNAA 285 (326)
Q Consensus 212 ~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa-~-----GgI~s~~da~~~ 285 (326)
.+.++ .++..++.|+|.+-+.... +...+ ...-++++.++.+.. ++||+. | |--.+++.+.++
T Consensus 86 ~~ai~-la~~a~~~Gadavlv~~P~--y~~~~-------~~~l~~~f~~va~a~-~lPiilYn~P~~tg~~l~~~~~~~L 154 (293)
T 1f6k_A 86 KEAVE-LGKYATELGYDCLSAVTPF--YYKFS-------FPEIKHYYDTIIAET-GSNMIVYSIPFLTGVNMGIEQFGEL 154 (293)
T ss_dssp HHHHH-HHHHHHHHTCSEEEEECCC--SSCCC-------HHHHHHHHHHHHHHH-CCCEEEEECHHHHCCCCCHHHHHHH
T ss_pred HHHHH-HHHHHHhcCCCEEEECCCC--CCCCC-------HHHHHHHHHHHHHhC-CCCEEEEECccccCcCCCHHHHHHH
Confidence 45555 3555678999999886432 11100 011244556666554 788765 3 444588888777
Q ss_pred HH
Q 020423 286 LR 287 (326)
Q Consensus 286 l~ 287 (326)
.+
T Consensus 155 a~ 156 (293)
T 1f6k_A 155 YK 156 (293)
T ss_dssp HT
T ss_pred hc
Confidence 54
|
| >2isw_A Putative fructose-1,6-bisphosphate aldolase; class II fructose-1,6-bisphosphate aldolase, glycolytic pathway, giardia lamblia, drug target; HET: PGH; 1.75A {Giardia intestinalis} PDB: 2isv_A* 3ohi_A* 3gay_A* 3gak_A* 3gb6_A* | Back alignment and structure |
|---|
Probab=90.24 E-value=5.3 Score=36.58 Aligned_cols=151 Identities=11% Similarity=0.198 Sum_probs=88.1
Q ss_pred CCCcEEEEecCC-CHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEe
Q 020423 123 EQHPIVLQIGGS-NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKC 201 (326)
Q Consensus 123 ~~~piivQL~g~-~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~ 201 (326)
.+-|++++|-|. +.+. .+++.++||.-|-+-.+ .. .++.+.+...++++...+ .|+.|-.-+
T Consensus 74 ~~VPValHlDHg~~~e~----i~~ai~~GFtSVMiDgS-~~-----------p~eENi~~Tk~vv~~ah~-~gvsVEaEL 136 (323)
T 2isw_A 74 PDIPICIHLDHGDTLES----VKMAIDLGFSSVMIDAS-HH-----------PFDENVRITKEVVAYAHA-RSVSVEAEL 136 (323)
T ss_dssp TTSCEEEEEEEECSHHH----HHHHHHTTCSEEEECCT-TS-----------CHHHHHHHHHHHHHHHHT-TTCEEEEEE
T ss_pred CCCcEEEECCCCCCHHH----HHHHHHcCCCeEEecCC-CC-----------CHHHHHHHHHHHHHHHHH-cCCeEEEEe
Confidence 345777777543 3322 44566778888888643 11 234667788888877643 354444333
Q ss_pred cc-CC-CC-------CccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCC--ccHHHHHHHHhcCCCceE
Q 020423 202 RI-GV-DD-------HDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPP--LKYEYYYALLRDFPDLTF 270 (326)
Q Consensus 202 r~-g~-~~-------~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~--~~~~~i~~i~~~~~~iPV 270 (326)
-. |. ++ ..+.++..+| .++.|+|.+-++-++.. +-+... ..+. ++++.++++.+.. ++|+
T Consensus 137 G~vgg~Ed~v~~~~~yTdPeea~~F----v~~TgvD~LAvaiGt~H-G~Yk~~---~~p~~~L~~~~L~~I~~~~-~vpL 207 (323)
T 2isw_A 137 GTLGGIEEDVQNTVQLTEPQDAKKF----VELTGVDALAVAIGTSH-GAYKFK---SESDIRLAIDRVKTISDLT-GIPL 207 (323)
T ss_dssp SCC----------CCCCCHHHHHHH----HHHHCCSEEEECSSCCS-SSBCCC---C----CCCCHHHHHHHHHH-CSCE
T ss_pred CCccCCccCcccccccCCHHHHHHH----HHHHCCCEEEEecCccc-cccCCC---CCcccccCHHHHHHHHHHh-CCCe
Confidence 21 11 21 1235555443 45679999999866541 111100 1134 6688888887765 8999
Q ss_pred EEeCCC---------------------C-CHHHHHHHHHhCCChhhhhHHH
Q 020423 271 TLNGGI---------------------N-TVDEVNAALRKGAHHVMVGRAA 299 (326)
Q Consensus 271 Ia~GgI---------------------~-s~~da~~~l~~GaD~V~iGRal 299 (326)
+.=||= . ..+++.++++.|+.=|-+++-+
T Consensus 208 VlHGgSsvp~~~~~~~~~~gg~~~~~~Gvp~e~i~~ai~~GV~KiNi~Tdl 258 (323)
T 2isw_A 208 VMHGSSSVPKDVKDMINKYGGKMPDAVGVPIESIVHAIGEGVCKINVDSDS 258 (323)
T ss_dssp EECSCCCCCHHHHHHHHHTTCCCTTCBCCCHHHHHHHHHTTEEEEEECHHH
T ss_pred EEECCCCCCHHHHHHHHHhccccccCCCCCHHHHHHHHHCCCeEEEEChHH
Confidence 999954 2 4467888888886666665544
|
| >3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A | Back alignment and structure |
|---|
Probab=89.95 E-value=4.3 Score=36.80 Aligned_cols=128 Identities=10% Similarity=0.064 Sum_probs=75.3
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC--CCcEEEEeccCCCCCccHH
Q 020423 135 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYN 212 (326)
Q Consensus 135 ~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~--~~pv~vK~r~g~~~~~~~~ 212 (326)
+.+.+.+.+++..+.|.|++-++.. +|+ +.+| ..+.-.++++.+.+.+ .+||.+.+.. .+..
T Consensus 27 D~~~l~~lv~~li~~Gv~gl~v~Gt--------TGE-~~~L--s~~Er~~v~~~~~~~~~grvpviaGvg~-----~~t~ 90 (309)
T 3fkr_A 27 DLASQKRAVDFMIDAGSDGLCILAN--------FSE-QFAI--TDDERDVLTRTILEHVAGRVPVIVTTSH-----YSTQ 90 (309)
T ss_dssp CHHHHHHHHHHHHHTTCSCEEESSG--------GGT-GGGS--CHHHHHHHHHHHHHHHTTSSCEEEECCC-----SSHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEECcc--------ccC-cccC--CHHHHHHHHHHHHHHhCCCCcEEEecCC-----chHH
Confidence 6788999999999999999999642 233 2222 2333344555554443 4788887543 2344
Q ss_pred HHHHHHHHHhhhCCccEEEEecCCcccCC-CCcCCcCCCCCccHHHHHHHHhcCCCceEEE-----eCCCCCHHHHHHHH
Q 020423 213 QLCDFIYKVSSLSPTRHFIIHSRKALLNG-ISPAENRTIPPLKYEYYYALLRDFPDLTFTL-----NGGINTVDEVNAAL 286 (326)
Q Consensus 213 e~~~~ia~~le~~Gvd~I~v~~~~~~~~g-~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa-----~GgI~s~~da~~~l 286 (326)
+.++ +++..++.|+|.+-+... ++.. ..+. ...-+++++++.+.. ++||+. .|--.+++.+.++.
T Consensus 91 ~ai~-la~~A~~~Gadavlv~~P--yy~~~~~~s-----~~~l~~~f~~va~a~-~lPiilYn~P~tg~~l~~~~~~~La 161 (309)
T 3fkr_A 91 VCAA-RSLRAQQLGAAMVMAMPP--YHGATFRVP-----EAQIFEFYARVSDAI-AIPIMVQDAPASGTALSAPFLARMA 161 (309)
T ss_dssp HHHH-HHHHHHHTTCSEEEECCS--CBTTTBCCC-----HHHHHHHHHHHHHHC-SSCEEEEECGGGCCCCCHHHHHHHH
T ss_pred HHHH-HHHHHHHcCCCEEEEcCC--CCccCCCCC-----HHHHHHHHHHHHHhc-CCCEEEEeCCCCCCCCCHHHHHHHH
Confidence 5555 355667899999988642 2210 0000 011244556666554 777754 25456777777776
Q ss_pred H
Q 020423 287 R 287 (326)
Q Consensus 287 ~ 287 (326)
+
T Consensus 162 ~ 162 (309)
T 3fkr_A 162 R 162 (309)
T ss_dssp H
T ss_pred h
Confidence 3
|
| >3tqp_A Enolase; energy metabolism, lyase; 2.20A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=89.92 E-value=1.7 Score=41.53 Aligned_cols=102 Identities=10% Similarity=0.149 Sum_probs=61.7
Q ss_pred CCHHHHHHHHHHHHhc---CCCcEEEEeccC---------C---CCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCC
Q 020423 177 LDPKFVGEAMSVIAAN---TNVPVSVKCRIG---------V---DDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNG 241 (326)
Q Consensus 177 ~r~~~l~eiv~avr~~---~~~pv~vK~r~g---------~---~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g 241 (326)
.+.+.+..++++||++ .|..+.+-+-.. + ...-+.++.++++.+++++.++.+|. .
T Consensus 216 ~~~e~l~~i~~Air~agy~~G~dv~l~vD~aase~~~~g~Y~l~~~~~t~~eai~~~~~ll~~y~i~~IE----d----- 286 (428)
T 3tqp_A 216 NNEAAFELILEAIEDANYVPGKDIYLALDAASSELYQNGRYDFENNQLTSEEMIDRLTEWTKKYPVISIE----D----- 286 (428)
T ss_dssp SHHHHHHHHHHHHHHTTCCBTTTBEEEEECCGGGSEETTEECCSSSCBCHHHHHHHHHHHHHHSCEEEEE----C-----
T ss_pred cHHHHHHHHHHHHHHhhcccCCceEEEEecchhhhccCCceeccccccCHHHHHHHHHHHHhhcccceEe----C-----
Confidence 3445556668999988 654443333221 0 11225667777666667888877763 1
Q ss_pred CCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCC---CCCHHHHHHHHHhC-CChhhh
Q 020423 242 ISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGG---INTVDEVNAALRKG-AHHVMV 295 (326)
Q Consensus 242 ~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~Gg---I~s~~da~~~l~~G-aD~V~i 295 (326)
..++-+|+.++++.+.. ..||-.+|+ +++++++.++++.+ +|.|++
T Consensus 287 -------Pl~~dD~eg~~~L~~~~-~~pI~ivGDel~vt~~~~~~~~i~~~a~d~i~i 336 (428)
T 3tqp_A 287 -------GLSENDWAGWKLLTERL-ENKVQLVGDDIFVTNPDILEKGIKKNIANAILV 336 (428)
T ss_dssp -------CSCTTCHHHHHHHHHHH-TTTSEEEESTTTTTCHHHHHHHHHTTCCSEEEE
T ss_pred -------CCCcccHHHHHHHHHhc-CCCcceeccccccCCHHHHHHHHHhCCCCEEEe
Confidence 12334577777777664 444433344 45999999999866 777654
|
| >3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} SCOP: c.1.10.0 | Back alignment and structure |
|---|
Probab=89.76 E-value=7.5 Score=35.22 Aligned_cols=126 Identities=10% Similarity=0.071 Sum_probs=76.7
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC-CCcEEEEeccCCCCCccHHH
Q 020423 135 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQ 213 (326)
Q Consensus 135 ~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~-~~pv~vK~r~g~~~~~~~~e 213 (326)
+.+.+.+.+++..+.|.|+|-++.. +++ +.+| ..+.-.++++.+.+.+ ..||.+.+.. .++.+
T Consensus 27 D~~~l~~lv~~li~~Gv~Gl~v~Gt--------TGE-~~~L--t~~Er~~v~~~~v~~~grvpViaGvg~-----~~t~~ 90 (313)
T 3dz1_A 27 DDVSIDRLTDFYAEVGCEGVTVLGI--------LGE-APKL--DAAEAEAVATRFIKRAKSMQVIVGVSA-----PGFAA 90 (313)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEESTG--------GGT-GGGS--CHHHHHHHHHHHHHHCTTSEEEEECCC-----SSHHH
T ss_pred CHHHHHHHHHHHHHCCCCEEEeCcc--------CcC-hhhC--CHHHHHHHHHHHHHHcCCCcEEEecCC-----CCHHH
Confidence 6788999999999999999988642 233 2222 2333345555555444 5788775433 23455
Q ss_pred HHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCC-CceEEE------eCCCCCHHHHHHHH
Q 020423 214 LCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFP-DLTFTL------NGGINTVDEVNAAL 286 (326)
Q Consensus 214 ~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~-~iPVIa------~GgI~s~~da~~~l 286 (326)
.++ +++..++.|+|.+-+..-. +. .+ ...-+++++++.+... ++||+. .|---+++.+.++.
T Consensus 91 ai~-la~~A~~~Gadavlv~~P~--~~-~s-------~~~l~~~f~~va~a~~~~lPiilYn~P~~tg~~l~~~~~~~La 159 (313)
T 3dz1_A 91 MRR-LARLSMDAGAAGVMIAPPP--SL-RT-------DEQITTYFRQATEAIGDDVPWVLQDYPLTLSVVMTPKVIRQIV 159 (313)
T ss_dssp HHH-HHHHHHHHTCSEEEECCCT--TC-CS-------HHHHHHHHHHHHHHHCTTSCEEEEECHHHHCCCCCHHHHHHHH
T ss_pred HHH-HHHHHHHcCCCEEEECCCC--CC-CC-------HHHHHHHHHHHHHhCCCCCcEEEEeCccccCcCCCHHHHHHHH
Confidence 555 3556678999999885321 10 00 0112455666666542 399876 36566888888876
Q ss_pred H
Q 020423 287 R 287 (326)
Q Consensus 287 ~ 287 (326)
+
T Consensus 160 ~ 160 (313)
T 3dz1_A 160 M 160 (313)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >4adt_A Pyridoxine biosynthetic enzyme PDX1 homologue, PU; transferase, pyridoxal 5-phosphate biosynthesis; 2.42A {Plasmodium berghei} PDB: 4adu_A* 4ads_A | Back alignment and structure |
|---|
Probab=89.50 E-value=0.73 Score=41.86 Aligned_cols=68 Identities=7% Similarity=-0.019 Sum_probs=49.0
Q ss_pred HHHHhhhCCccEEEEecCC----cccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChh
Q 020423 218 IYKVSSLSPTRHFIIHSRK----ALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHV 293 (326)
Q Consensus 218 ia~~le~~Gvd~I~v~~~~----~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V 293 (326)
+++.++++|+|.|.+-... ...+|. ......+.+.++++.+ ++||++-+++...+++..+.+.|||.|
T Consensus 33 ~A~~ye~~GA~~lsvLe~~~~Di~~~~g~-------~R~~~~~~i~~i~~~v-~iPvl~k~~i~~ide~qil~aaGAD~I 104 (297)
T 4adt_A 33 QAKIAEKAGAIGVMILENIPSELRNTDGV-------ARSVDPLKIEEIRKCI-SINVLAKVRIGHFVEAQILEELKVDML 104 (297)
T ss_dssp HHHHHHHHTCSEEEECCCCC-----CCCC-------CCCCCHHHHHHHHTTC-CSEEEEEEETTCHHHHHHHHHTTCSEE
T ss_pred HHHHHHHcCCCEEEEecCCCCcchhcCCc-------ccCCCHHHHHHHHHhc-CCCEEEeccCCcHHHHHHHHHcCCCEE
Confidence 4667889999999876311 111121 1112478888887664 999999988988999998889999999
|
| >2r91_A 2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM barrel, thermophilic, lyase; 2.00A {Thermoproteus tenax} PDB: 2r94_A | Back alignment and structure |
|---|
Probab=88.95 E-value=8.5 Score=34.34 Aligned_cols=122 Identities=12% Similarity=0.053 Sum_probs=73.6
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHH
Q 020423 135 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQL 214 (326)
Q Consensus 135 ~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~ 214 (326)
|.+.+.+.+++..+.|.|++-++.. +++ +.+ -..+.-.++++.+++.++- |.+.+.. .+..+.
T Consensus 17 D~~~l~~lv~~li~~Gv~gl~v~Gt--------tGE-~~~--Ls~~Er~~v~~~~~~~~~g-vi~Gvg~-----~~t~~a 79 (286)
T 2r91_A 17 DPELFANHVKNITSKGVDVVFVAGT--------TGL-GPA--LSLQEKMELTDAATSAARR-VIVQVAS-----LNADEA 79 (286)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEETST--------TTT-GGG--SCHHHHHHHHHHHHHHCSS-EEEECCC-----SSHHHH
T ss_pred CHHHHHHHHHHHHHCCCCEEEECcc--------ccC-hhh--CCHHHHHHHHHHHHHHhCC-EEEeeCC-----CCHHHH
Confidence 6788999999999999999998642 233 222 2344445666666666543 6554322 234455
Q ss_pred HHHHHHHhhhCCccEEEEecCCcccCC-CCcCCcCCCCCccHHHHHHHHhcCCCceEEE-e-----CCCCCHHHHHH
Q 020423 215 CDFIYKVSSLSPTRHFIIHSRKALLNG-ISPAENRTIPPLKYEYYYALLRDFPDLTFTL-N-----GGINTVDEVNA 284 (326)
Q Consensus 215 ~~~ia~~le~~Gvd~I~v~~~~~~~~g-~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa-~-----GgI~s~~da~~ 284 (326)
++ .++..++.|+|.+-+.... +.. .+ ...-++++.++.+.. ++||+. | |--.+++.+.+
T Consensus 80 i~-la~~A~~~Gadavlv~~P~--y~~~~s-------~~~l~~~f~~va~a~-~lPiilYn~P~~tg~~l~~~~~~~ 145 (286)
T 2r91_A 80 IA-LAKYAESRGAEAVASLPPY--YFPRLS-------ERQIAKYFRDLCSAV-SIPVFLYNYPAAVGRDVDARAAKE 145 (286)
T ss_dssp HH-HHHHHHHTTCSEEEECCSC--SSTTCC-------HHHHHHHHHHHHHHC-SSCEEEEECHHHHSSCCCHHHHHH
T ss_pred HH-HHHHHHhcCCCEEEEcCCc--CCCCCC-------HHHHHHHHHHHHHhc-CCCEEEEeChhhcCCCCCHHHHHh
Confidence 55 3556678999999886432 111 10 011245566666654 899866 2 43457777766
|
| >3nvt_A 3-deoxy-D-arabino-heptulosonate 7-phosphate synth; bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismat listeria monocytogenes EGD-E; 1.95A {Listeria monocytogenes} PDB: 3tfc_A* | Back alignment and structure |
|---|
Probab=88.90 E-value=15 Score=34.37 Aligned_cols=117 Identities=18% Similarity=0.121 Sum_probs=75.1
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHH
Q 020423 134 SNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQ 213 (326)
Q Consensus 134 ~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e 213 (326)
++.+...+.|+.++++|+|.|-...--|.+. ...|-| -..+ -.+++..+++..|+|+..- + -+...+
T Consensus 153 es~e~a~~~a~~~k~aGa~~vk~q~fkprts---~~~f~g---l~~e-gl~~L~~~~~~~Gl~~~te--~--~d~~~~-- 219 (385)
T 3nvt_A 153 ESYEQVAAVAESIKAKGLKLIRGGAFKPRTS---PYDFQG---LGLE-GLKILKRVSDEYGLGVISE--I--VTPADI-- 219 (385)
T ss_dssp CCHHHHHHHHHHHHHTTCCEEECBSSCCCSS---TTSCCC---CTHH-HHHHHHHHHHHHTCEEEEE--C--CSGGGH--
T ss_pred CCHHHHHHHHHHHHHcCCCeEEcccccCCCC---hHhhcC---CCHH-HHHHHHHHHHHcCCEEEEe--c--CCHHHH--
Confidence 4678888999999999999998875444322 111211 1123 2356666677779998653 1 222222
Q ss_pred HHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCC-CCHHHHHHHHH
Q 020423 214 LCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI-NTVDEVNAALR 287 (326)
Q Consensus 214 ~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI-~s~~da~~~l~ 287 (326)
+ .+.+. +|++-|.+++. .++.++.++.+ .+.||+..-|. .+.+++..+++
T Consensus 220 --~----~l~~~-vd~lkIgs~~~---------------~n~~LL~~~a~--~gkPVilk~G~~~t~~e~~~Ave 270 (385)
T 3nvt_A 220 --E----VALDY-VDVIQIGARNM---------------QNFELLKAAGR--VDKPILLKRGLSATIEEFIGAAE 270 (385)
T ss_dssp --H----HHTTT-CSEEEECGGGT---------------TCHHHHHHHHT--SSSCEEEECCTTCCHHHHHHHHH
T ss_pred --H----HHHhh-CCEEEECcccc---------------cCHHHHHHHHc--cCCcEEEecCCCCCHHHHHHHHH
Confidence 1 23456 99999877652 12566666543 38999999888 89998887776
|
| >2nuw_A 2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho aldolase; TIM barrel, lyase; 1.80A {Sulfolobus acidocaldarius dsm 639} PDB: 2nux_A 2nuy_A | Back alignment and structure |
|---|
Probab=88.88 E-value=8 Score=34.57 Aligned_cols=123 Identities=16% Similarity=0.116 Sum_probs=76.0
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHH
Q 020423 135 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQL 214 (326)
Q Consensus 135 ~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~ 214 (326)
|.+.+.+.+++..+.|.|++-++.. +|+ +.+ -..+.-.++++.+++.++- |.+.+.. .+..+.
T Consensus 18 D~~~l~~lv~~li~~Gv~gl~v~Gt--------TGE-~~~--Ls~eEr~~v~~~~~~~~~g-ViaGvg~-----~~t~~a 80 (288)
T 2nuw_A 18 NVDALKTHAKNLLEKGIDAIFVNGT--------TGL-GPA--LSKDEKRQNLNALYDVTHK-LIFQVGS-----LNLNDV 80 (288)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEETST--------TTT-GGG--SCHHHHHHHHHHHTTTCSC-EEEECCC-----SCHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEECcc--------ccC-hhh--CCHHHHHHHHHHHHHHhCC-eEEeeCC-----CCHHHH
Confidence 6788999999999999999998652 233 222 2345556777777776644 5554322 234455
Q ss_pred HHHHHHHhhhCCccEEEEecCCcccCC-CCcCCcCCCCCccHHHHHHHHhcCCCceEEE-e-----CCCCCHHHHHHH
Q 020423 215 CDFIYKVSSLSPTRHFIIHSRKALLNG-ISPAENRTIPPLKYEYYYALLRDFPDLTFTL-N-----GGINTVDEVNAA 285 (326)
Q Consensus 215 ~~~ia~~le~~Gvd~I~v~~~~~~~~g-~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa-~-----GgI~s~~da~~~ 285 (326)
++ .++..++.|+|.+-+.... +.. .+ ...-++++.++.+.. ++||+. | |--.+++.+.++
T Consensus 81 i~-la~~A~~~Gadavlv~~P~--y~~~~s-------~~~l~~~f~~va~a~-~lPiilYn~P~~tg~~l~~~~~~~L 147 (288)
T 2nuw_A 81 ME-LVKFSNEMDILGVSSHSPY--YFPRLP-------EKFLAKYYEEIARIS-SHSLYIYNYPAATGYDIPPSILKSL 147 (288)
T ss_dssp HH-HHHHHHTSCCSEEEECCCC--SSCSCC-------HHHHHHHHHHHHHHC-CSCEEEEECHHHHSCCCCHHHHTTT
T ss_pred HH-HHHHHHhcCCCEEEEcCCc--CCCCCC-------HHHHHHHHHHHHHhc-CCCEEEEECchHhCcCCCHHHHhcc
Confidence 55 4556678999999886432 111 00 011245566666664 899866 3 444577777665
|
| >3s5o_A 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; beta barrel, schiff base, hydroxyproline metabolis; HET: KPI; 1.97A {Homo sapiens} SCOP: c.1.10.0 PDB: 3s5n_A | Back alignment and structure |
|---|
Probab=88.87 E-value=13 Score=33.53 Aligned_cols=139 Identities=13% Similarity=0.085 Sum_probs=83.0
Q ss_pred CCCCcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEe
Q 020423 122 PEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKC 201 (326)
Q Consensus 122 ~~~~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~ 201 (326)
....|+++...+.+.++-.+.++.++++|+|++-+- .|..+ . .. -..+-+.+-.++|.++++.|+.+=-
T Consensus 81 ~gr~pviaGvg~~~t~~ai~la~~A~~~Gadavlv~--~P~y~-~------~~--~s~~~l~~~f~~ia~a~~lPiilYn 149 (307)
T 3s5o_A 81 PKNRLLLAGSGCESTQATVEMTVSMAQVGADAAMVV--TPCYY-R------GR--MSSAALIHHYTKVADLSPIPVVLYS 149 (307)
T ss_dssp CTTSEEEEECCCSSHHHHHHHHHHHHHTTCSEEEEE--CCCTT-G------GG--CCHHHHHHHHHHHHHHCSSCEEEEE
T ss_pred CCCCcEEEecCCCCHHHHHHHHHHHHHcCCCEEEEc--CCCcC-C------CC--CCHHHHHHHHHHHHhhcCCCEEEEe
Confidence 345689999988899999999999999999999985 34421 1 00 1356677888888888899998753
Q ss_pred cc---CCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcC--CCceEEEeCCC
Q 020423 202 RI---GVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF--PDLTFTLNGGI 276 (326)
Q Consensus 202 r~---g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~--~~iPVIa~GgI 276 (326)
-+ |.+- +.+. +.++.+.-.+-.|--+.+ ++..+.++++.. .++.| .+|.
T Consensus 150 ~P~~tg~~l--~~~~----~~~La~~pnIvgiKdssg------------------d~~~~~~~~~~~~~~~f~v-~~G~- 203 (307)
T 3s5o_A 150 VPANTGLDL--PVDA----VVTLSQHPNIVGMXDSGG------------------DVTRIGLIVHKTRKQDFQV-LAGS- 203 (307)
T ss_dssp CHHHHSCCC--CHHH----HHHHHTSTTEEEEEECSC------------------CHHHHHHHHHHTTTSSCEE-EESS-
T ss_pred CCcccCCCC--CHHH----HHHHhcCCCEEEEEcCCC------------------CHHHHHHHHHhccCCCeEE-EeCc-
Confidence 22 2221 2222 223332223433332211 244444554432 24544 4554
Q ss_pred CCHHHHHHHHHhCCChhhhhHHH
Q 020423 277 NTVDEVNAALRKGAHHVMVGRAA 299 (326)
Q Consensus 277 ~s~~da~~~l~~GaD~V~iGRal 299 (326)
-+.+...+..|++++..+.+-
T Consensus 204 --d~~~l~~l~~G~~G~is~~an 224 (307)
T 3s5o_A 204 --AGFLMASYALGAVGGVCALAN 224 (307)
T ss_dssp --GGGHHHHHHHTCCEEECGGGG
T ss_pred --HHHHHHHHHcCCCEEEechhh
Confidence 123556677888888777654
|
| >1w3i_A EDA, 2-keto-3-deoxy gluconate aldolase; archaeal metabolism, pyruvate; 1.7A {Sulfolobus solfataricus} SCOP: c.1.10.1 PDB: 1w37_A 1w3n_A* 1w3t_A* 2yda_A* | Back alignment and structure |
|---|
Probab=88.84 E-value=9.7 Score=34.12 Aligned_cols=122 Identities=16% Similarity=0.067 Sum_probs=75.3
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHH
Q 020423 135 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQL 214 (326)
Q Consensus 135 ~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~ 214 (326)
+.+.+.+.+++..+.|.|++-++.. +++ +.+ -..+.-.++++.+++.++- |.+.+.. .+..+.
T Consensus 18 D~~~l~~lv~~li~~Gv~gl~~~Gt--------tGE-~~~--Ls~eEr~~v~~~~~~~~~g-viaGvg~-----~~t~~a 80 (293)
T 1w3i_A 18 DKEKLKIHAENLIRKGIDKLFVNGT--------TGL-GPS--LSPEEKLENLKAVYDVTNK-IIFQVGG-----LNLDDA 80 (293)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEESST--------TTT-GGG--SCHHHHHHHHHHHHTTCSC-EEEECCC-----SCHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEECcc--------ccC-hhh--CCHHHHHHHHHHHHHHcCC-EEEecCC-----CCHHHH
Confidence 6788999999999999999999642 233 222 2344556777777776644 5554322 234555
Q ss_pred HHHHHHHhhhCCccEEEEecCCcccCC-CCcCCcCCCCCccHHHHHHHHhcCCCceEEE-e-----CCCCCHHHHHH
Q 020423 215 CDFIYKVSSLSPTRHFIIHSRKALLNG-ISPAENRTIPPLKYEYYYALLRDFPDLTFTL-N-----GGINTVDEVNA 284 (326)
Q Consensus 215 ~~~ia~~le~~Gvd~I~v~~~~~~~~g-~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa-~-----GgI~s~~da~~ 284 (326)
++ .++..++.|+|.+-+.... +.. .+ ...-++++.++.+.. ++||+. | |--.+++.+.+
T Consensus 81 i~-la~~A~~~Gadavlv~~P~--y~~~~s-------~~~l~~~f~~va~a~-~lPiilYn~P~~tg~~l~~~~~~~ 146 (293)
T 1w3i_A 81 IR-LAKLSKDFDIVGIASYAPY--YYPRMS-------EKHLVKYFKTLCEVS-PHPVYLYNYPTATGKDIDAKVAKE 146 (293)
T ss_dssp HH-HHHHGGGSCCSEEEEECCC--SCSSCC-------HHHHHHHHHHHHHHC-SSCEEEEECHHHHSCCCCHHHHHH
T ss_pred HH-HHHHHHhcCCCEEEEcCCC--CCCCCC-------HHHHHHHHHHHHhhC-CCCEEEEECchhhCcCCCHHHHHh
Confidence 55 4556788999999886432 111 10 011245566666654 889865 3 43457777766
|
| >3eb2_A Putative dihydrodipicolinate synthetase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2., structural genomics; HET: PGE; 2.04A {Rhodopseudomonas palustris} SCOP: c.1.10.0 | Back alignment and structure |
|---|
Probab=88.80 E-value=2.5 Score=38.22 Aligned_cols=125 Identities=10% Similarity=0.007 Sum_probs=71.0
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC--CCcEEEEeccCCCCCccHH
Q 020423 135 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYN 212 (326)
Q Consensus 135 ~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~--~~pv~vK~r~g~~~~~~~~ 212 (326)
|.+.+.+.+++..+.|.|++-++.. +++ +.+| ..+.-.++++.+.+.+ .+||.+.+... +..
T Consensus 23 D~~~l~~lv~~li~~Gv~gl~v~Gt--------tGE-~~~L--s~~Er~~v~~~~~~~~~grvpviaGvg~~-----~t~ 86 (300)
T 3eb2_A 23 RADVMGRLCDDLIQAGVHGLTPLGS--------TGE-FAYL--GTAQREAVVRATIEAAQRRVPVVAGVAST-----SVA 86 (300)
T ss_dssp CHHHHHHHHHHHHHTTCSCBBTTSG--------GGT-GGGC--CHHHHHHHHHHHHHHHTTSSCBEEEEEES-----SHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEECcc--------ccC-cccc--CHHHHHHHHHHHHHHhCCCCcEEEeCCCC-----CHH
Confidence 6788999999999999999977542 233 2222 2333344444444433 47888865542 344
Q ss_pred HHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEE-e-----CCCCCHHHHHHHH
Q 020423 213 QLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTL-N-----GGINTVDEVNAAL 286 (326)
Q Consensus 213 e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa-~-----GgI~s~~da~~~l 286 (326)
+.++ .++..++.|+|.+-+..... ...+ ...-+++++++.+.. ++||+. | |--.+++.+.++.
T Consensus 87 ~ai~-la~~a~~~Gadavlv~~P~y--~~~~-------~~~l~~~f~~va~a~-~lPiilYn~P~~tg~~l~~~~~~~La 155 (300)
T 3eb2_A 87 DAVA-QAKLYEKLGADGILAILEAY--FPLK-------DAQIESYFRAIADAV-EIPVVIYTNPQFQRSDLTLDVIARLA 155 (300)
T ss_dssp HHHH-HHHHHHHHTCSEEEEEECCS--SCCC-------HHHHHHHHHHHHHHC-SSCEEEEECTTTCSSCCCHHHHHHHH
T ss_pred HHHH-HHHHHHHcCCCEEEEcCCCC--CCCC-------HHHHHHHHHHHHHHC-CCCEEEEECccccCCCCCHHHHHHHH
Confidence 5555 34566789999998864321 1100 011134555555554 677654 2 3344666666553
|
| >2o7s_A DHQ-SDH PR, bifunctional 3-dehydroquinate dehydratase/shikima dehydrogenase; shikimate, NADPH, dehydroshikimate, bifunctional enzyme; HET: DHK TLA NAP; 1.78A {Arabidopsis thaliana} PDB: 2o7q_A* 2gpt_A* | Back alignment and structure |
|---|
Probab=88.59 E-value=6.6 Score=38.26 Aligned_cols=92 Identities=13% Similarity=0.129 Sum_probs=58.9
Q ss_pred CcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccC
Q 020423 125 HPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIG 204 (326)
Q Consensus 125 ~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g 204 (326)
..+++.|.+.+.++....++.+.+.|+|.||+-..+-.. ..+ .+-++.+++..+.|+.+-+|..
T Consensus 5 ~~icv~l~~~~~~~~~~~~~~~~~~g~D~vElRvD~l~~-------------~~~---~~~l~~l~~~~~~PiI~T~R~~ 68 (523)
T 2o7s_A 5 SLICAPVMADSIDKMVIETSKAHELGADLVEIRLDWLKD-------------FNP---LEDLKTIIKKSPLPTLFTYRPK 68 (523)
T ss_dssp CEEEEEECCSSHHHHHHHHHHHHHHTCSEEEEEGGGCSS-------------CCH---HHHHHHHHHHCSSCEEEECCBG
T ss_pred CEEEEEecCCCHHHHHHHHHHhhhcCCCEEEEEEecccc-------------cCh---HHHHHHHHhcCCCcEEEEeccc
Confidence 358899999999998888888888899999996532210 011 1233445556789999988864
Q ss_pred CCCC---ccHHHHHHHHHHHhhhCCccEEEEe
Q 020423 205 VDDH---DSYNQLCDFIYKVSSLSPTRHFIIH 233 (326)
Q Consensus 205 ~~~~---~~~~e~~~~ia~~le~~Gvd~I~v~ 233 (326)
++.. .+.++-.+.+...+ +.|+|+|+|.
T Consensus 69 ~eGG~~~~~~~~~~~ll~~~~-~~~~~yiDvE 99 (523)
T 2o7s_A 69 WEGGQYEGDENERRDVLRLAM-ELGADYIDVE 99 (523)
T ss_dssp GGTSSBCSCHHHHHHHHHHHH-HHTCSEEEEE
T ss_pred ccCCCCCCCHHHHHHHHHHHH-HhCCCEEEEE
Confidence 3321 12223333333333 3679999986
|
| >1vs1_A 3-deoxy-7-phosphoheptulonate synthase; (beta/alpha)8 barrel, transferase; HET: PEP; 2.30A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=88.58 E-value=5.8 Score=35.44 Aligned_cols=109 Identities=17% Similarity=0.157 Sum_probs=62.5
Q ss_pred cccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCc-cEEEEe-cCCcccCCCCcCCcCC
Q 020423 172 GVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPT-RHFIIH-SRKALLNGISPAENRT 249 (326)
Q Consensus 172 Ggsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gv-d~I~v~-~~~~~~~g~~~~~~~~ 249 (326)
|+...++..++.++- .++.||.+|-... .+++|+...+.. +...|. +.+.+| |... +.+. .
T Consensus 128 gs~~~~n~~ll~~~a-----~~~kPV~lk~G~~----~t~~ei~~Ave~-i~~~Gn~~i~L~~Rg~~~-yp~y------~ 190 (276)
T 1vs1_A 128 GARNMQNFPLLREVG-----RSGKPVLLKRGFG----NTVEELLAAAEY-ILLEGNWQVVLVERGIRT-FEPS------T 190 (276)
T ss_dssp CGGGTTCHHHHHHHH-----HHTCCEEEECCTT----CCHHHHHHHHHH-HHHTTCCCEEEEECCBCC-SCCS------S
T ss_pred CcccccCHHHHHHHH-----ccCCeEEEcCCCC----CCHHHHHHHHHH-HHHcCCCeEEEEeCCcCC-CCCc------C
Confidence 555566676666554 3589999984442 245555553333 345776 555556 4322 1111 1
Q ss_pred CCCccHHHHHHHHhcCCCceEEE-e---CCCCC--HHHHHHHHHhCCChhhhhHH
Q 020423 250 IPPLKYEYYYALLRDFPDLTFTL-N---GGINT--VDEVNAALRKGAHHVMVGRA 298 (326)
Q Consensus 250 ~~~~~~~~i~~i~~~~~~iPVIa-~---GgI~s--~~da~~~l~~GaD~V~iGRa 298 (326)
....++..+..+++.+ ++||++ + +|..+ ..-...++..|||+++|=+-
T Consensus 191 ~~~vdl~~i~~lk~~~-~lpVi~dssH~~g~~~~~~~~~~aAva~Ga~Gl~IE~H 244 (276)
T 1vs1_A 191 RFTLDVAAVAVLKEAT-HLPVIVDPSHPAGRRSLVPALAKAGLAAGADGLIVEVH 244 (276)
T ss_dssp SSBCBHHHHHHHHHHB-SSCEEECCHHHHCSGGGHHHHHHHHHHTTCSEEEEEBC
T ss_pred cchhCHHHHHHHHHHh-CCCEEEeCCCCCCccchHHHHHHHHHHcCCCEEEEEec
Confidence 1234566676666654 789876 2 24333 45566677799998887543
|
| >1p0k_A Isopentenyl-diphosphate delta-isomerase; terpene biosynthesis, dimethylallyl diphosphate, flavoprotein; 1.90A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1p0n_A* | Back alignment and structure |
|---|
Probab=88.55 E-value=1.3 Score=40.80 Aligned_cols=94 Identities=13% Similarity=0.065 Sum_probs=57.9
Q ss_pred cCCCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEE
Q 020423 192 NTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFT 271 (326)
Q Consensus 192 ~~~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVI 271 (326)
..+.|+.+.+..+.+ .++. .+.++..|+|+|.++...... ...+...+.. ...++.+.++++.. ++||+
T Consensus 114 ~~~~pv~~~i~~~~~----~~~~----~~~~~~~gad~i~i~~~~~~~-~~~~~~~~~~-~~~~~~i~~vr~~~-~~Pv~ 182 (349)
T 1p0k_A 114 NPNGLIFANLGSEAT----AAQA----KEAVEMIGANALQIHLNVIQE-IVMPEGDRSF-SGALKRIEQICSRV-SVPVI 182 (349)
T ss_dssp CSSSCEEEEEETTCC----HHHH----HHHHHHTTCSEEEEEECTTTT-C--------C-TTHHHHHHHHHHHC-SSCEE
T ss_pred CCCceeEEeecCCCC----HHHH----HHHHHhcCCCeEEecccchhh-hcCCCCCcch-HHHHHHHHHHHHHc-CCCEE
Confidence 457888887765432 2222 234566899999988653211 1111000000 01246677777665 89998
Q ss_pred Ee--CCCCCHHHHHHHHHhCCChhhhh
Q 020423 272 LN--GGINTVDEVNAALRKGAHHVMVG 296 (326)
Q Consensus 272 a~--GgI~s~~da~~~l~~GaD~V~iG 296 (326)
.- |...+++++..+.+.|+|+|.+.
T Consensus 183 vK~~~~~~~~~~a~~a~~~Gad~I~v~ 209 (349)
T 1p0k_A 183 VKEVGFGMSKASAGKLYEAGAAAVDIG 209 (349)
T ss_dssp EEEESSCCCHHHHHHHHHHTCSEEEEE
T ss_pred EEecCCCCCHHHHHHHHHcCCCEEEEc
Confidence 85 55578999999999999999983
|
| >3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A | Back alignment and structure |
|---|
Probab=88.44 E-value=7.1 Score=35.33 Aligned_cols=70 Identities=11% Similarity=0.124 Sum_probs=52.9
Q ss_pred CCCCcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEe
Q 020423 122 PEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKC 201 (326)
Q Consensus 122 ~~~~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~ 201 (326)
....|+++...+.+.++-.+.++.++++|+|++-+- .|. |+...--..+-+.+-.++|.++++.|+.+--
T Consensus 75 ~grvpviaGvg~~~t~~ai~la~~A~~~Gadavlv~--~Py--------y~~~~~~s~~~l~~~f~~va~a~~lPiilYn 144 (309)
T 3fkr_A 75 AGRVPVIVTTSHYSTQVCAARSLRAQQLGAAMVMAM--PPY--------HGATFRVPEAQIFEFYARVSDAIAIPIMVQD 144 (309)
T ss_dssp TTSSCEEEECCCSSHHHHHHHHHHHHHTTCSEEEEC--CSC--------BTTTBCCCHHHHHHHHHHHHHHCSSCEEEEE
T ss_pred CCCCcEEEecCCchHHHHHHHHHHHHHcCCCEEEEc--CCC--------CccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 345799999998999999999999999999999984 243 2110012356777888888888899988753
|
| >3fa4_A 2,3-dimethylmalate lyase; alpha/beta barrel, helix swapping; 2.18A {Aspergillus niger} PDB: 3fa3_A | Back alignment and structure |
|---|
Probab=88.38 E-value=0.99 Score=41.06 Aligned_cols=82 Identities=15% Similarity=0.149 Sum_probs=53.2
Q ss_pred HHHHHHHHHCCCCEEEecC--------CCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC-CCcEEEEeccCCCCCcc
Q 020423 140 AKATELANAYNYDEINLNC--------GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDS 210 (326)
Q Consensus 140 ~~aA~~a~~aG~d~Iein~--------g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~-~~pv~vK~r~g~~~~~~ 210 (326)
.-.|+.+.++|||.|=+.. |.|.. | .-..+-+..-++.|++.. +.||++-+-.|+.+
T Consensus 28 ~~sA~l~e~aGf~ai~vsG~~~a~~~~G~pD~--------~---~vt~~em~~~~~~I~~~~~~~PviaD~d~Gyg~--- 93 (302)
T 3fa4_A 28 GLSARVALSAGFDALYMTGAGTAASVHGQADL--------G---ICTLNDMRANAEMISNISPSTPVIADADTGYGG--- 93 (302)
T ss_dssp HHHHHHHHTTTCSCEEECHHHHHHHHHSCCSS--------S---CCCHHHHHHHHHHHHTTSTTSCEEEECTTTTSS---
T ss_pred HHHHHHHHHcCCCEEEeCcHHHHHHHcCCCCC--------C---cCCHHHHHHHHHHHHhhccCCCEEEECCCCCCC---
Confidence 3457778899999998842 22321 1 122444555566776654 89999999998643
Q ss_pred HHHHHHHHHHHhhhCCccEEEEecCC
Q 020423 211 YNQLCDFIYKVSSLSPTRHFIIHSRK 236 (326)
Q Consensus 211 ~~e~~~~ia~~le~~Gvd~I~v~~~~ 236 (326)
.+...+. .+.++++|++.+++.+..
T Consensus 94 ~~~v~~t-v~~l~~aGaagv~iEDq~ 118 (302)
T 3fa4_A 94 PIMVART-TEQYSRSGVAAFHIEDQV 118 (302)
T ss_dssp HHHHHHH-HHHHHHTTCCEEEECSBC
T ss_pred HHHHHHH-HHHHHHcCCcEEEECCCC
Confidence 3344443 344567999999998754
|
| >3p6l_A Sugar phosphate isomerase/epimerase; TIM barrel, structural genomics, joint center for structural genomics, JCSG; HET: CIT; 1.85A {Parabacteroides distasonis} | Back alignment and structure |
|---|
Probab=88.35 E-value=2.4 Score=36.72 Aligned_cols=137 Identities=10% Similarity=0.117 Sum_probs=73.5
Q ss_pred CCcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccc---cccCCHHHHHHHHHHHHhcCCCcEEEE
Q 020423 124 QHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGV---SLMLDPKFVGEAMSVIAANTNVPVSVK 200 (326)
Q Consensus 124 ~~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGg---sl~~r~~~l~eiv~avr~~~~~pv~vK 200 (326)
+-++.+|.+......+.++.+.++++|||+||+....|... .|.+ .....++.+.++.+.+++ .|+.+..-
T Consensus 9 ~mklg~~~~~~~~~~~~~~l~~~~~~G~~~vEl~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~l~~-~gl~i~~~ 82 (262)
T 3p6l_A 9 GWRLGMQSYSFHLFPLTEALDKTQELGLKYIEIYPGHKLGG-----KWGDKVFDFNLDAQTQKEIKELAAS-KGIKIVGT 82 (262)
T ss_dssp TEEEEEEGGGGTTSCHHHHHHHHHHTTCCEEEECTTEECCG-----GGTTCEESTTCCHHHHHHHHHHHHH-TTCEEEEE
T ss_pred CcEEEEEecccCCCCHHHHHHHHHHcCCCEEeecCCccccc-----ccccccccccCCHHHHHHHHHHHHH-cCCeEEEE
Confidence 34678887654444688899999999999999976543210 0111 111235555565555533 45554432
Q ss_pred eccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEe---C-C-
Q 020423 201 CRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLN---G-G- 275 (326)
Q Consensus 201 ~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~---G-g- 275 (326)
........+.+.+.+ +.....|++.|.++.+. ..|..+.+..++. ++.+..- + -
T Consensus 83 ~~~~~~~~~~~~~~i----~~A~~lGa~~v~~~~~~----------------~~~~~l~~~a~~~-gv~l~~En~~~~~~ 141 (262)
T 3p6l_A 83 GVYVAEKSSDWEKMF----KFAKAMDLEFITCEPAL----------------SDWDLVEKLSKQY-NIKISVHNHPQPSD 141 (262)
T ss_dssp EEECCSSTTHHHHHH----HHHHHTTCSEEEECCCG----------------GGHHHHHHHHHHH-TCEEEEECCSSSSS
T ss_pred eccCCccHHHHHHHH----HHHHHcCCCEEEecCCH----------------HHHHHHHHHHHHh-CCEEEEEeCCCccc
Confidence 211111122333333 34456899999998531 1255555554443 3433221 1 1
Q ss_pred CCCHHHHHHHHH
Q 020423 276 INTVDEVNAALR 287 (326)
Q Consensus 276 I~s~~da~~~l~ 287 (326)
..+++++.++++
T Consensus 142 ~~~~~~~~~ll~ 153 (262)
T 3p6l_A 142 YWKPENLLKAIS 153 (262)
T ss_dssp SSSHHHHHHHHT
T ss_pred cCCHHHHHHHHH
Confidence 246777777775
|
| >1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function; HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=88.18 E-value=3.7 Score=35.46 Aligned_cols=61 Identities=20% Similarity=0.148 Sum_probs=45.5
Q ss_pred HHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhh
Q 020423 220 KVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVG 296 (326)
Q Consensus 220 ~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iG 296 (326)
+.+.+.|++.|.+.-.+. ...+.++++.++++++ +++.|-+.+.+++..+++.|||+|..+
T Consensus 36 ~al~~gGv~~iel~~k~~---------------~~~~~i~~l~~~~~~l-~vgaGtvl~~d~~~~A~~aGAd~v~~p 96 (224)
T 1vhc_A 36 DTLAKNGLSVAEITFRSE---------------AAADAIRLLRANRPDF-LIAAGTVLTAEQVVLAKSSGADFVVTP 96 (224)
T ss_dssp HHHHHTTCCEEEEETTST---------------THHHHHHHHHHHCTTC-EEEEESCCSHHHHHHHHHHTCSEEECS
T ss_pred HHHHHcCCCEEEEeccCc---------------hHHHHHHHHHHhCcCc-EEeeCcEeeHHHHHHHHHCCCCEEEEC
Confidence 344569999998864321 1256677777777665 466677889999999999999999877
|
| >2opj_A O-succinylbenzoate-COA synthase; TIM barrel, structural genomics, protein structure initiative; 1.60A {Thermobifida fusca} PDB: 2qvh_A* | Back alignment and structure |
|---|
Probab=88.17 E-value=1 Score=41.35 Aligned_cols=123 Identities=7% Similarity=0.008 Sum_probs=60.6
Q ss_pred cCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCC--cEEEEeccCCCCCc
Q 020423 132 GGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNV--PVSVKCRIGVDDHD 209 (326)
Q Consensus 132 ~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~--pv~vK~r~g~~~~~ 209 (326)
...++++..+.++ +.||..+-+..|.+ |.++ +.-.+.+++||+.++. .+.+-...+|
T Consensus 77 ~~~~~e~~~~~~~---~~G~~~~KiKvg~~----------g~~~----~~d~~~v~avR~~~G~~~~L~vDaN~~w---- 135 (327)
T 2opj_A 77 PAVGPEEAARIVA---SSGCTTAKVKVAER----------GQSE----ANDVARVEAVRDALGPRGRVRIDVNGAW---- 135 (327)
T ss_dssp CSCCHHHHHHHHH---HHCCSEEEEECCC--------------------CHHHHHHHHHHHHCTTSEEEEECTTCS----
T ss_pred CCCCHHHHHHHHH---HCCCCEEEEEeCCC----------CCCH----HHHHHHHHHHHHHhCCCCEEEEECCCCC----
Confidence 3346666444333 46999999987532 1111 2224667888887643 3444333333
Q ss_pred cHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhC
Q 020423 210 SYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKG 289 (326)
Q Consensus 210 ~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~G 289 (326)
+.++..++ .+.+++.++.+|. . + .+ .++.++++.+.. ++||.+-=.+.+..++.++++.|
T Consensus 136 ~~~~A~~~-~~~L~~~~l~~iE----q-----------P-~~--~~~~~~~l~~~~-~iPIa~dEs~~~~~~~~~~i~~~ 195 (327)
T 2opj_A 136 DVDTAVRM-IRLLDRFELEYVE----Q-----------P-CA--TVDELAEVRRRV-SVPIAADESIRRAEDPLRVRDAE 195 (327)
T ss_dssp CHHHHHHH-HHHHGGGCEEEEE----C-----------C-SS--SHHHHHHHHHHC-SSCEEC-----------CTTTTT
T ss_pred CHHHHHHH-HHHHHhcCCcEEe----C-----------C-CC--CHHHHHHHHhhC-CCCEEcCCCCCCHHHHHHHHHhC
Confidence 34555554 4456777887763 0 0 11 245555665554 67777766677777766666544
Q ss_pred -CChhhh
Q 020423 290 -AHHVMV 295 (326)
Q Consensus 290 -aD~V~i 295 (326)
+|.|++
T Consensus 196 a~d~i~i 202 (327)
T 2opj_A 196 AADVVVL 202 (327)
T ss_dssp CCSBEEE
T ss_pred CCCEEEe
Confidence 666655
|
| >1vr6_A Phospho-2-dehydro-3-deoxyheptonate aldolase; TM0343, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative; 1.92A {Thermotoga maritima} SCOP: c.1.10.4 PDB: 1rzm_A* 3pg9_A* 3pg8_A* | Back alignment and structure |
|---|
Probab=88.04 E-value=14 Score=34.06 Aligned_cols=125 Identities=12% Similarity=0.049 Sum_probs=79.5
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHH
Q 020423 135 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQL 214 (326)
Q Consensus 135 ~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~ 214 (326)
+.+...+.|+.++++|+|.+-...--|.+.. ..|=|- -+.-.+++..+++..|+|+..- + -+..+++
T Consensus 118 s~e~a~~~a~~~k~aGa~~vr~q~fKprTs~---~~f~gl----g~egl~~l~~~~~e~Gl~~~te--~--~d~~~~~-- 184 (350)
T 1vr6_A 118 GREMLMETAHFLSELGVKVLRGGAYKPRTSP---YSFQGL----GEKGLEYLREAADKYGMYVVTE--A--LGEDDLP-- 184 (350)
T ss_dssp CHHHHHHHHHHHHHTTCCEEECBSCCCCCST---TSCCCC----THHHHHHHHHHHHHHTCEEEEE--C--SSGGGHH--
T ss_pred CHHHHHHHHHHHHHcCCCeeeeeEEeCCCCh---HhhcCC----CHHHHHHHHHHHHHcCCcEEEE--e--CCHHHHH--
Confidence 6788889999999999999887765554321 112211 1233455566667779998663 1 2222222
Q ss_pred HHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCC-CHHHHHHHHH----hC
Q 020423 215 CDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGIN-TVDEVNAALR----KG 289 (326)
Q Consensus 215 ~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~-s~~da~~~l~----~G 289 (326)
.+++. +|++-|.+++. .++.++.++.+ .+.||+..-|.. |.+++..+++ .|
T Consensus 185 ------~l~~~-vd~lkIgAr~~---------------~n~~LL~~va~--~~kPVilk~G~~~tl~ei~~Ave~i~~~G 240 (350)
T 1vr6_A 185 ------KVAEY-ADIIQIGARNA---------------QNFRLLSKAGS--YNKPVLLKRGFMNTIEEFLLSAEYIANSG 240 (350)
T ss_dssp ------HHHHH-CSEEEECGGGT---------------TCHHHHHHHHT--TCSCEEEECCTTCCHHHHHHHHHHHHHTT
T ss_pred ------HHHHh-CCEEEECcccc---------------cCHHHHHHHHc--cCCcEEEcCCCCCCHHHHHHHHHHHHHCC
Confidence 22345 89999887653 13666777663 389999999997 8888776665 56
Q ss_pred CChhhhh
Q 020423 290 AHHVMVG 296 (326)
Q Consensus 290 aD~V~iG 296 (326)
.+-|.+.
T Consensus 241 N~~viLc 247 (350)
T 1vr6_A 241 NTKIILC 247 (350)
T ss_dssp CCCEEEE
T ss_pred CCeEEEE
Confidence 6444443
|
| >3lye_A Oxaloacetate acetyl hydrolase; (alpha/beta)8 barrel; 1.30A {Cryphonectria parasitica} PDB: 3m0j_A* 3m0k_A | Back alignment and structure |
|---|
Probab=87.98 E-value=0.68 Score=42.25 Aligned_cols=82 Identities=10% Similarity=0.059 Sum_probs=53.8
Q ss_pred HHHHHHHHHCCCCEEEecC--------CCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCC--CcEEEEeccCCCCCc
Q 020423 140 AKATELANAYNYDEINLNC--------GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTN--VPVSVKCRIGVDDHD 209 (326)
Q Consensus 140 ~~aA~~a~~aG~d~Iein~--------g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~--~pv~vK~r~g~~~~~ 209 (326)
.-.|+.+.++|||.|=+.. |.|.. + .-..+-+.+.++.|++.++ .||++-+-.|+.+
T Consensus 35 ~~sA~l~e~aGf~ai~vsG~~~a~s~~G~pD~--------~---~vt~~em~~~~~~i~r~~~~~~PviaD~d~Gyg~-- 101 (307)
T 3lye_A 35 GLSARTAMELGFKSLYMTGAGTTASRLGQPDL--------A---IAQLHDMRDNADMIANLDPFGPPLIADMDTGYGG-- 101 (307)
T ss_dssp HHHHHHHHHTTCSCEEECHHHHHHHHHCCCSS--------S---CSCHHHHHHHHHHHHTSSTTSCCEEEECTTCSSS--
T ss_pred HHHHHHHHHcCCCEEEeccHHHHHHhcCCCCC--------C---CCCHHHHHHHHHhhhccCCCCCcEEEECCCCCCC--
Confidence 3457778899999998842 22321 1 1234555666777776654 8999999988643
Q ss_pred cHHHHHHHHHHHhhhCCccEEEEecCC
Q 020423 210 SYNQLCDFIYKVSSLSPTRHFIIHSRK 236 (326)
Q Consensus 210 ~~~e~~~~ia~~le~~Gvd~I~v~~~~ 236 (326)
.+...+. .+.++++|++.+++.+..
T Consensus 102 -~~~v~~~-v~~l~~aGaagv~iEDq~ 126 (307)
T 3lye_A 102 -PIMVART-VEHYIRSGVAGAHLEDQI 126 (307)
T ss_dssp -HHHHHHH-HHHHHHTTCCEEEECCBC
T ss_pred -HHHHHHH-HHHHHHcCCeEEEEcCCC
Confidence 3344443 344567999999998754
|
| >1nsj_A PRAI, phosphoribosyl anthranilate isomerase; thermostability; 2.00A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1lbm_A 1dl3_A | Back alignment and structure |
|---|
Probab=87.92 E-value=3.9 Score=34.83 Aligned_cols=122 Identities=11% Similarity=0.139 Sum_probs=67.8
Q ss_pred EEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCC
Q 020423 129 LQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDH 208 (326)
Q Consensus 129 vQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~ 208 (326)
+.++|-.. .+.++.+.++|+|++-+.+.-++ .| | -.++.+.++.+.+... ...|.+-.+
T Consensus 4 vKICGit~---~eda~~a~~~GaD~iGfif~~~S---pR---~-----V~~~~a~~i~~~~~~~---~~~VgVfvn---- 62 (205)
T 1nsj_A 4 VKICGITN---LEDALFSVESGADAVGFVFYPKS---KR---Y-----ISPEDARRISVELPPF---VFRVGVFVN---- 62 (205)
T ss_dssp EEECCCCS---HHHHHHHHHHTCSEEEEECCTTC---TT---B-----CCHHHHHHHHHHSCSS---SEEEEEESS----
T ss_pred EEECCCCc---HHHHHHHHHcCCCEEEEEecCCC---CC---c-----CCHHHHHHHHHhCCCC---CCEEEEEeC----
Confidence 45555331 23456677889999999874222 22 1 2467777777665321 222222121
Q ss_pred ccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHh
Q 020423 209 DSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRK 288 (326)
Q Consensus 209 ~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~ 288 (326)
.+.+++ .++.++.++|++.+||.+. .+++.++++ ++|||-+=.+.+.+++..+...
T Consensus 63 ~~~~~i----~~~~~~~~ld~vQLHG~e~-----------------~~~~~~l~~---~~~vika~~v~~~~~l~~~~~~ 118 (205)
T 1nsj_A 63 EEPEKI----LDVASYVQLNAVQLHGEEP-----------------IELCRKIAE---RILVIKAVGVSNERDMERALNY 118 (205)
T ss_dssp CCHHHH----HHHHHHHTCSEEEECSCCC-----------------HHHHHHHHT---TSEEEEEEEESSHHHHHHHGGG
T ss_pred CCHHHH----HHHHHhhCCCEEEECCCCC-----------------HHHHHHHhc---CCCEEEEEEcCCHHHHHHHHHc
Confidence 233333 3345568999999997431 234444432 4677776667777776654444
Q ss_pred CCChhhh
Q 020423 289 GAHHVMV 295 (326)
Q Consensus 289 GaD~V~i 295 (326)
.+|.+.+
T Consensus 119 ~~d~~Ll 125 (205)
T 1nsj_A 119 REFPILL 125 (205)
T ss_dssp TTSCEEE
T ss_pred CCCEEEE
Confidence 4665554
|
| >2p3z_A L-rhamnonate dehydratase; enolase, structural genomics, PSI, protein structure initiat YORK structural genomics research consortium; 1.80A {Salmonella typhimurium LT2} PDB: 3box_A 3cxo_A* 2gsh_A 3d47_A 3d46_A 2i5q_A | Back alignment and structure |
|---|
Probab=87.91 E-value=2 Score=40.78 Aligned_cols=119 Identities=12% Similarity=0.123 Sum_probs=73.6
Q ss_pred HHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCC--cEEEEeccCCCCCccHHHHHHHHHHHhh
Q 020423 146 ANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNV--PVSVKCRIGVDDHDSYNQLCDFIYKVSS 223 (326)
Q Consensus 146 a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~--pv~vK~r~g~~~~~~~~e~~~~ia~~le 223 (326)
+.+.||..+-+..+-. +. ||. .+.+.-.+.++++|++++. .+.+-...+| +.++..+++ +.++
T Consensus 182 ~~~~G~~~~KiK~g~g-------~~-~G~--~~~~~d~~~v~avrea~G~~~~L~vDaN~~~----~~~~Ai~~~-~~l~ 246 (415)
T 2p3z_A 182 AKEMGFIGGKMPTHWG-------PH-DGD--AGIRKDAAMVADMREKCGPDFWLMLDCWMSQ----DVNYATKLA-HACA 246 (415)
T ss_dssp HHHHTCSEEEEECCCC-------GG-GHH--HHHHHHHHHHHHHHHHHCSSSEEEEECTTCC----CHHHHHHHH-HHHG
T ss_pred HHHhCcceEEEecccC-------cc-ccc--ccHHHHHHHHHHHHHHhCCCCEEEEECCCCC----CHHHHHHHH-HHHh
Confidence 3556899988864210 11 221 1344556778888887643 3433332233 455666654 4467
Q ss_pred hCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCC-CceEEEeCCCCCHHHHHHHHHhCCChhhh
Q 020423 224 LSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFP-DLTFTLNGGINTVDEVNAALRKGAHHVMV 295 (326)
Q Consensus 224 ~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~-~iPVIa~GgI~s~~da~~~l~~GaD~V~i 295 (326)
+.++.+|. . ..++.+++.++++.+... .+||.+-=.+.+..++.++++.++|.|++
T Consensus 247 ~~~i~~iE----q------------Pl~~~d~~~~~~l~~~~~~~ipIa~dE~~~~~~~~~~~i~~~~d~i~i 303 (415)
T 2p3z_A 247 PFNLKWIE----E------------CLPPQQYEGYRELKRNAPAGMMVTSGEHHGTLQSFRTLAETGIDIMQP 303 (415)
T ss_dssp GGTCCEEE----C------------CSCTTCHHHHHHHHHHSCTTCEEEECTTCCSHHHHHHHHHTTCSEECC
T ss_pred hcCCceEe----C------------CCCcchHHHHHHHHHhcCCCCcEEcCCCCCCHHHHHHHHHcCCCEEEe
Confidence 78888774 1 123335777777777652 28877777788999999998866888876
|
| >4g8t_A Glucarate dehydratase; enolase, enzyme function INI EFI, structural genomics, lyase; 1.70A {Actinobacillus succinogenes} PDB: 1ec7_A 1ec8_A* 1ec9_A* 1ecq_A* 1jdf_A* 3pwi_A* 1jct_A* 3pwg_A* 1bqg_A | Back alignment and structure |
|---|
Probab=87.79 E-value=4.2 Score=39.11 Aligned_cols=126 Identities=13% Similarity=0.066 Sum_probs=74.3
Q ss_pred CHHHHHHHHH-HHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC-CCcEEEEeccCCCCCccHH
Q 020423 135 NLDNLAKATE-LANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYN 212 (326)
Q Consensus 135 ~~~~f~~aA~-~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~-~~pv~vK~r~g~~~~~~~~ 212 (326)
++++.++.++ ...+.||+.+-+..|.. +++.-.+.++++|+++ +.++.+-...+| +.+
T Consensus 202 ~~~~~~~~~~~~~~~~Gf~~~KlKvG~~----------------~~~~di~~v~avrea~pd~~L~vDaN~~w----t~~ 261 (464)
T 4g8t_A 202 TPESVVRLAEAAYEKYGFNDFKLKGGVL----------------DGFEEAEAVTALAKRFPDARITLDPNGAW----SLD 261 (464)
T ss_dssp SHHHHHHHHHHHHHHHCCSCEEEECSSS----------------CHHHHHHHHHHHHHHSTTCCEEEECTTCB----CHH
T ss_pred CHHHHHHHHHHHHHHcCCCeEEEeCCCC----------------CHHHHHHHHHHHHhhCCCceEEEECCCcc----CHH
Confidence 3455555544 44566999999976522 2333456788888877 444444433333 455
Q ss_pred HHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhC-CC
Q 020423 213 QLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKG-AH 291 (326)
Q Consensus 213 e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~G-aD 291 (326)
+.++ +.+.+++. +.++. .+ .+++ . .....+.++++++.. ++||.+.=.+.+..++.++++.+ +|
T Consensus 262 ~Ai~-~~~~le~~-l~wiE----eP-----~~~~--d-~~~~~e~~a~lr~~~-~iPIa~gE~~~~~~~~~~~i~~~avd 326 (464)
T 4g8t_A 262 EAVK-IGKQLKGV-LAYAE----DP-----CGAE--Q-GYSGREIMAEFRRAT-GLPTATNMIATDWRQMGHTISLQSVD 326 (464)
T ss_dssp HHHH-HHHHTTTT-CSCEE----SC-----BCCB--T-TBCHHHHHHHHHHHH-CCCEEESSSSCSHHHHHHHHHHTCCS
T ss_pred HHHH-HHHHhhhc-cceee----cC-----cCcc--c-ccchHHHHHhhhccC-CCCccccccccchhhHHHHHHhhCCC
Confidence 5555 45556654 55542 11 0000 0 011235566666654 89998888899999999999866 67
Q ss_pred hhhh
Q 020423 292 HVMV 295 (326)
Q Consensus 292 ~V~i 295 (326)
.++.
T Consensus 327 i~~~ 330 (464)
T 4g8t_A 327 IPLA 330 (464)
T ss_dssp EEBC
T ss_pred EEec
Confidence 6553
|
| >1ydo_A HMG-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG,; 2.71A {Bacillus subtilis subsp} | Back alignment and structure |
|---|
Probab=87.77 E-value=1.7 Score=39.56 Aligned_cols=138 Identities=13% Similarity=0.038 Sum_probs=74.9
Q ss_pred HHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEec--cCCCC--CccHHHHHHHH
Q 020423 143 TELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCR--IGVDD--HDSYNQLCDFI 218 (326)
Q Consensus 143 A~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r--~g~~~--~~~~~e~~~~i 218 (326)
.+++.++|.|.|.+-.++... ..+...+-+.+...+.+.++++.+++. +..+.+-+. .+.++ ..+.+.+.+ +
T Consensus 87 i~~a~~~g~~~v~i~~~~sd~--~~~~~l~~s~~e~l~~~~~~v~~ak~~-G~~v~~~i~~~~~~~~~~~~~~~~~~~-~ 162 (307)
T 1ydo_A 87 LENALEGGINEACVFMSASET--HNRKNINKSTSESLHILKQVNNDAQKA-NLTTRAYLSTVFGCPYEKDVPIEQVIR-L 162 (307)
T ss_dssp HHHHHHHTCSEEEEEEESSHH--HHHTTTCSCHHHHHHHHHHHHHHHHHT-TCEEEEEEECTTCBTTTBCCCHHHHHH-H
T ss_pred HHHHHhCCcCEEEEEeecCHH--HHHHHhCCCHHHHHHHHHHHHHHHHHC-CCEEEEEEEEEecCCcCCCCCHHHHHH-H
Confidence 555667799998886543211 111223444444455666667666553 555543333 33221 234555555 3
Q ss_pred HHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeC----CCCCHHHHHHHHHhCCChhh
Q 020423 219 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNG----GINTVDEVNAALRKGAHHVM 294 (326)
Q Consensus 219 a~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~G----gI~s~~da~~~l~~GaD~V~ 294 (326)
++.+.+.|+|.|.+....+ .. .|....+.+..+++..+++||-.=+ |. -......+++.||+.|-
T Consensus 163 ~~~~~~~Ga~~i~l~DT~G----~~------~P~~v~~lv~~l~~~~~~~~l~~H~Hnd~Gl-a~AN~laAv~aGa~~vd 231 (307)
T 1ydo_A 163 SEALFEFGISELSLGDTIG----AA------NPAQVETVLEALLARFPANQIALHFHDTRGT-ALANMVTALQMGITVFD 231 (307)
T ss_dssp HHHHHHHTCSCEEEECSSC----CC------CHHHHHHHHHHHHTTSCGGGEEEECBGGGSC-HHHHHHHHHHHTCCEEE
T ss_pred HHHHHhcCCCEEEEcCCCC----Cc------CHHHHHHHHHHHHHhCCCCeEEEEECCCCch-HHHHHHHHHHhCCCEEE
Confidence 4555679999999875332 11 1112245666666665567765532 33 23445666778877665
Q ss_pred h
Q 020423 295 V 295 (326)
Q Consensus 295 i 295 (326)
.
T Consensus 232 ~ 232 (307)
T 1ydo_A 232 G 232 (307)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >1f6y_A 5-methyltetrahydrofolate corrinoid/iron sulfur PR methyltransferase; carbon dioxide fixation, cobalamin, methyltatrahydrofolate; 2.20A {Moorella thermoacetica} SCOP: c.1.21.2 PDB: 2e7f_A* 4djd_A* 4dje_A* 4djf_A* 2ogy_A* | Back alignment and structure |
|---|
Probab=87.76 E-value=5.2 Score=35.42 Aligned_cols=53 Identities=9% Similarity=0.048 Sum_probs=38.8
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEE
Q 020423 135 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVK 200 (326)
Q Consensus 135 ~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK 200 (326)
+.+...+.|+...+.|+|.|+|+++.+. ....+.+.+++..|++.++.|+++-
T Consensus 23 ~~~~a~~~a~~~v~~GAdiIDIg~g~~~-------------v~~~ee~~rvv~~i~~~~~~pisID 75 (262)
T 1f6y_A 23 DPAPVQEWARRQEEGGARALDLNVGPAV-------------QDKVSAMEWLVEVTQEVSNLTLCLD 75 (262)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEBCC-----------------CHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred CHHHHHHHHHHHHHCCCcEEEECCCCCC-------------CChHHHHHHHHHHHHHhCCCeEEEe
Confidence 5666777778888899999999985432 1236778888888887778888874
|
| >3h5d_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, schiff base, cytoplasm, diaminopimelate biosy lyase; HET: MES; 1.99A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=87.68 E-value=7.1 Score=35.38 Aligned_cols=111 Identities=16% Similarity=0.057 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC--CCcEEEEeccCCCCCccHH
Q 020423 135 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYN 212 (326)
Q Consensus 135 ~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~--~~pv~vK~r~g~~~~~~~~ 212 (326)
+.+.+.+.+++..+.|.|++-++ |.-|-...-..+.-.++++.+.+.+ ..||.+.+.. .+..
T Consensus 26 D~~~l~~lv~~li~~Gv~Gl~v~-----------GtTGE~~~Ls~~Er~~v~~~~~~~~~grvpViaGvg~-----~~t~ 89 (311)
T 3h5d_A 26 NFDAIPALIEHLLAHHTDGILLA-----------GTTAESPTLTHDEELELFAAVQKVVNGRVPLIAGVGT-----NDTR 89 (311)
T ss_dssp CTTHHHHHHHHHHHTTCCCEEES-----------STTTTGGGSCHHHHHHHHHHHHHHSCSSSCEEEECCC-----SSHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEEC-----------ccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCCC-----cCHH
Q ss_pred HHHHHHHHHhhhCCc-cEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEE
Q 020423 213 QLCDFIYKVSSLSPT-RHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTL 272 (326)
Q Consensus 213 e~~~~ia~~le~~Gv-d~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa 272 (326)
+.++ .++..++.|+ |.+-+......... ...-++++.++.+.. ++||+.
T Consensus 90 ~ai~-la~~A~~~Ga~davlv~~P~y~~~s---------~~~l~~~f~~va~a~-~lPiil 139 (311)
T 3h5d_A 90 DSIE-FVKEVAEFGGFAAGLAIVPYYNKPS---------QEGMYQHFKAIADAS-DLPIII 139 (311)
T ss_dssp HHHH-HHHHHHHSCCCSEEEEECCCSSCCC---------HHHHHHHHHHHHHSC-SSCEEE
T ss_pred HHHH-HHHHHHhcCCCcEEEEcCCCCCCCC---------HHHHHHHHHHHHHhC-CCCEEE
|
| >1vs1_A 3-deoxy-7-phosphoheptulonate synthase; (beta/alpha)8 barrel, transferase; HET: PEP; 2.30A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=87.66 E-value=15 Score=32.81 Aligned_cols=135 Identities=16% Similarity=0.130 Sum_probs=83.0
Q ss_pred EEEEecC-CCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCC
Q 020423 127 IVLQIGG-SNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGV 205 (326)
Q Consensus 127 iivQL~g-~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~ 205 (326)
+|+..++ .+.+...+.|+.++++|+|.+-...--|.+.. ..|=|- -+.-.++++.+++..|+|+..- .
T Consensus 41 vIAgpc~~~~~e~a~~~a~~~k~~ga~~~k~~~~kprts~---~~f~g~----g~~gl~~l~~~~~~~Gl~~~te----~ 109 (276)
T 1vs1_A 41 VIAGPCSVESWEQVREAALAVKEAGAHMLRGGAFKPRTSP---YSFQGL----GLEGLKLLRRAGDEAGLPVVTE----V 109 (276)
T ss_dssp EEEECSBCCCHHHHHHHHHHHHHHTCSEEECBSSCCCSST---TSCCCC----THHHHHHHHHHHHHHTCCEEEE----C
T ss_pred EEEecCCCCCHHHHHHHHHHHHHhCCCEEEeEEEeCCCCh---hhhcCC----CHHHHHHHHHHHHHcCCcEEEe----c
Confidence 4444543 36788889999999999999887765554321 112211 1333455566667779998653 1
Q ss_pred CCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCC-CHHHHHH
Q 020423 206 DDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGIN-TVDEVNA 284 (326)
Q Consensus 206 ~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~-s~~da~~ 284 (326)
-+..++ + .+++. +|++-|.+++. .++.++.++.+. +.||+..-|.. +.+++..
T Consensus 110 ~d~~~~----~----~l~~~-vd~~kIgs~~~---------------~n~~ll~~~a~~--~kPV~lk~G~~~t~~ei~~ 163 (276)
T 1vs1_A 110 LDPRHV----E----TVSRY-ADMLQIGARNM---------------QNFPLLREVGRS--GKPVLLKRGFGNTVEELLA 163 (276)
T ss_dssp CCGGGH----H----HHHHH-CSEEEECGGGT---------------TCHHHHHHHHHH--TCCEEEECCTTCCHHHHHH
T ss_pred CCHHHH----H----HHHHh-CCeEEECcccc---------------cCHHHHHHHHcc--CCeEEEcCCCCCCHHHHHH
Confidence 222222 2 22345 89999887653 125566666543 89999999997 8888877
Q ss_pred HHH----hCC-ChhhhhHH
Q 020423 285 ALR----KGA-HHVMVGRA 298 (326)
Q Consensus 285 ~l~----~Ga-D~V~iGRa 298 (326)
+++ .|. +.+.+=|+
T Consensus 164 Ave~i~~~Gn~~i~L~~Rg 182 (276)
T 1vs1_A 164 AAEYILLEGNWQVVLVERG 182 (276)
T ss_dssp HHHHHHHTTCCCEEEEECC
T ss_pred HHHHHHHcCCCeEEEEeCC
Confidence 665 465 44443333
|
| >3hgj_A Chromate reductase; TIM barrel, oxidoreductase; HET: FMN; 2.00A {Thermus scotoductus} SCOP: c.1.4.0 PDB: 3hf3_A* | Back alignment and structure |
|---|
Probab=87.56 E-value=3.7 Score=37.93 Aligned_cols=95 Identities=11% Similarity=0.127 Sum_probs=56.9
Q ss_pred CCCCcEEEEec-------CCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCC
Q 020423 122 PEQHPIVLQIG-------GSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTN 194 (326)
Q Consensus 122 ~~~~piivQL~-------g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~ 194 (326)
..+.|+.+-|. +.+.+++.+.++.++++|+|.|+++.+.......... + +..-.+.++.+++.++
T Consensus 217 G~d~pV~vRls~~~~~~~g~~~~~~~~la~~L~~~Gvd~i~vs~g~~~~~~~~~~--~------~~~~~~~~~~ir~~~~ 288 (349)
T 3hgj_A 217 PRELPLFVRVSATDWGEGGWSLEDTLAFARRLKELGVDLLDCSSGGVVLRVRIPL--A------PGFQVPFADAVRKRVG 288 (349)
T ss_dssp CTTSCEEEEEESCCCSTTSCCHHHHHHHHHHHHHTTCCEEEEECCCSCSSSCCCC--C------TTTTHHHHHHHHHHHC
T ss_pred cCCceEEEEeccccccCCCCCHHHHHHHHHHHHHcCCCEEEEecCCcCcccccCC--C------ccccHHHHHHHHHHcC
Confidence 34678888776 4568899999999999999999998653221100000 1 1112345667777778
Q ss_pred CcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEe
Q 020423 195 VPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIH 233 (326)
Q Consensus 195 ~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~ 233 (326)
+||..- -+.. +.++. .+++++..+|.|.+-
T Consensus 289 iPVi~~--Ggi~---t~e~a----~~~l~~G~aD~V~iG 318 (349)
T 3hgj_A 289 LRTGAV--GLIT---TPEQA----ETLLQAGSADLVLLG 318 (349)
T ss_dssp CEEEEC--SSCC---CHHHH----HHHHHTTSCSEEEES
T ss_pred ceEEEE--CCCC---CHHHH----HHHHHCCCceEEEec
Confidence 888652 2222 23332 234444449998763
|
| >2bdq_A Copper homeostasis protein CUTC; alpha beta protein, structural genomics, PSI, protein structure initiative; 2.30A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=87.49 E-value=4.1 Score=35.29 Aligned_cols=76 Identities=8% Similarity=-0.032 Sum_probs=43.8
Q ss_pred HHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHH---hcCCCcEEEEeccCCCC--C--ccHHHHH
Q 020423 143 TELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA---ANTNVPVSVKCRIGVDD--H--DSYNQLC 215 (326)
Q Consensus 143 A~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr---~~~~~pv~vK~r~g~~~--~--~~~~e~~ 215 (326)
|..|++.|+|-|||..+-.. || +--.... ++.++ +.+++||.+=+|+-..+ + .+++.+.
T Consensus 14 a~~A~~~GAdRIELc~~L~~---------GG-lTPS~g~----i~~~~~~~~~~~ipV~vMIRPR~GdF~Ys~~E~~~M~ 79 (224)
T 2bdq_A 14 LTRLDKAIISRVELCDNLAV---------GG-TTPSYGV----IKEANQYLHEKGISVAVMIRPRGGNFVYNDLELRIME 79 (224)
T ss_dssp GGGCCTTTCCEEEEEBCGGG---------TC-BCCCHHH----HHHHHHHHHHTTCEEEEECCSSSSCSCCCHHHHHHHH
T ss_pred HHHHHHcCCCEEEEcCCccc---------CC-cCCCHHH----HHHHHHhhhhcCCceEEEECCCCCCCcCCHHHHHHHH
Confidence 45577889999999743111 11 1111223 33444 66789998888872222 1 2344444
Q ss_pred HHHHHHhhhCCccEEEEe
Q 020423 216 DFIYKVSSLSPTRHFIIH 233 (326)
Q Consensus 216 ~~ia~~le~~Gvd~I~v~ 233 (326)
+-+. .+.+.|+|.+.+-
T Consensus 80 ~Di~-~~~~~GadGvV~G 96 (224)
T 2bdq_A 80 EDIL-RAVELESDALVLG 96 (224)
T ss_dssp HHHH-HHHHTTCSEEEEC
T ss_pred HHHH-HHHHcCCCEEEEe
Confidence 4333 4567999999874
|
| >3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} SCOP: c.1.10.0 | Back alignment and structure |
|---|
Probab=87.41 E-value=1.2 Score=40.60 Aligned_cols=82 Identities=5% Similarity=-0.030 Sum_probs=46.5
Q ss_pred cHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHH---
Q 020423 210 SYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAAL--- 286 (326)
Q Consensus 210 ~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l--- 286 (326)
+.+.+.+.+ +.+.+.|+|.|.+-|.++....++. ....+.+..+++...++|||+.=|=.+.+++.+..
T Consensus 27 D~~~l~~lv-~~li~~Gv~Gl~v~GtTGE~~~Lt~-------~Er~~v~~~~v~~~grvpViaGvg~~~t~~ai~la~~A 98 (313)
T 3dz1_A 27 DDVSIDRLT-DFYAEVGCEGVTVLGILGEAPKLDA-------AEAEAVATRFIKRAKSMQVIVGVSAPGFAAMRRLARLS 98 (313)
T ss_dssp CHHHHHHHH-HHHHHTTCSEEEESTGGGTGGGSCH-------HHHHHHHHHHHHHCTTSEEEEECCCSSHHHHHHHHHHH
T ss_pred CHHHHHHHH-HHHHHCCCCEEEeCccCcChhhCCH-------HHHHHHHHHHHHHcCCCcEEEecCCCCHHHHHHHHHHH
Confidence 444444433 3445699999998876542111111 11133444444444479988754444555444433
Q ss_pred -HhCCChhhhhHHH
Q 020423 287 -RKGAHHVMVGRAA 299 (326)
Q Consensus 287 -~~GaD~V~iGRal 299 (326)
+.|||++++-.+.
T Consensus 99 ~~~Gadavlv~~P~ 112 (313)
T 3dz1_A 99 MDAGAAGVMIAPPP 112 (313)
T ss_dssp HHHTCSEEEECCCT
T ss_pred HHcCCCEEEECCCC
Confidence 3799999998765
|
| >1f76_A Dihydroorotate dehydrogenase; monomer, alpha-beta-barrel, FMN binding domain, orotate complex, oxidoreductase; HET: MSE FMN ORO; 2.50A {Bacteria} SCOP: c.1.4.1 | Back alignment and structure |
|---|
Probab=87.32 E-value=4.3 Score=37.04 Aligned_cols=100 Identities=12% Similarity=0.019 Sum_probs=59.3
Q ss_pred CCcEEEEecC-CCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccC----CCCccccc-cCCHHHHHHHHHHHHhcC--CC
Q 020423 124 QHPIVLQIGG-SNLDNLAKATELANAYNYDEINLNCGCPSPKVAG----HGCFGVSL-MLDPKFVGEAMSVIAANT--NV 195 (326)
Q Consensus 124 ~~piivQL~g-~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r----~d~yGgsl-~~r~~~l~eiv~avr~~~--~~ 195 (326)
+.|+++-+.. .+.++..+.|+.+.++|+|+|.++.+.......+ ...+|+-- ........+.+..+++.+ ++
T Consensus 211 ~~Pv~vKi~~~~~~~~~~~~a~~l~~~Gvd~i~vsn~~~~~~~~~~~~~~~~~gg~~g~~~~~~~~~~i~~i~~~~~~~i 290 (336)
T 1f76_A 211 YVPIAVKIAPDLSEEELIQVADSLVRHNIDGVIATNTTLDRSLVQGMKNCDQTGGLSGRPLQLKSTEIIRRLSLELNGRL 290 (336)
T ss_dssp CCCEEEECCSCCCHHHHHHHHHHHHHTTCSEEEECCCBCCCTTSTTSTTTTCSSEEEEGGGHHHHHHHHHHHHHHHTTSS
T ss_pred cCceEEEecCCCCHHHHHHHHHHHHHcCCcEEEEeCCcccccccccccccccCCCcCCchhHHHHHHHHHHHHHHhCCCC
Confidence 6799999864 3567888999999999999999975421100000 01223210 011224457778888877 67
Q ss_pred cEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEe
Q 020423 196 PVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIH 233 (326)
Q Consensus 196 pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~ 233 (326)
||.. ..|..+ .++..+ .++ .|+|.+.+.
T Consensus 291 pVi~--~GGI~~---~~da~~----~l~-~GAd~V~ig 318 (336)
T 1f76_A 291 PIIG--VGGIDS---VIAARE----KIA-AGASLVQIY 318 (336)
T ss_dssp CEEE--ESSCCS---HHHHHH----HHH-HTCSEEEES
T ss_pred CEEE--ECCCCC---HHHHHH----HHH-CCCCEEEee
Confidence 8765 334333 333332 333 689999774
|
| >1mxs_A KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate aldolase, sulfate, beta-BA lyase; 2.20A {Pseudomonas putida} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=87.27 E-value=3.8 Score=35.41 Aligned_cols=90 Identities=13% Similarity=0.087 Sum_probs=57.7
Q ss_pred HHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHH
Q 020423 182 VGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYAL 261 (326)
Q Consensus 182 l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i 261 (326)
..++++.+++. ++..=+|.. +.++..++ ++.+.+.|++.|.+.-.+ +...+.++++
T Consensus 16 ~~~~~~~l~~~---~ii~V~r~~--~~~~~~~~----~~al~~gGv~~iel~~k~---------------~~~~~~i~~l 71 (225)
T 1mxs_A 16 AARIDAICEKA---RILPVITIA--REEDILPL----ADALAAGGIRTLEVTLRS---------------QHGLKAIQVL 71 (225)
T ss_dssp HHHHHHHHHHH---SEEEEECCS--CGGGHHHH----HHHHHHTTCCEEEEESSS---------------THHHHHHHHH
T ss_pred HHHHHHHHHHC---CEEEEEeCC--CHHHHHHH----HHHHHHCCCCEEEEecCC---------------ccHHHHHHHH
Confidence 44455555443 444444542 22233232 334456999999886432 1124567767
Q ss_pred HhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhh
Q 020423 262 LRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVG 296 (326)
Q Consensus 262 ~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iG 296 (326)
.++++++. ++.|-+.+.+++..+++.|||+|.++
T Consensus 72 ~~~~~~~~-igagtvl~~d~~~~A~~aGAd~v~~p 105 (225)
T 1mxs_A 72 REQRPELC-VGAGTVLDRSMFAAVEAAGAQFVVTP 105 (225)
T ss_dssp HHHCTTSE-EEEECCCSHHHHHHHHHHTCSSEECS
T ss_pred HHhCcccE-EeeCeEeeHHHHHHHHHCCCCEEEeC
Confidence 77776664 66677899999999999999999887
|
| >3qfe_A Putative dihydrodipicolinate synthase family PROT; seattle structural genomics center for infectious disease, S coccidioides, valley fever; 2.35A {Coccidioides immitis} | Back alignment and structure |
|---|
Probab=87.16 E-value=17 Score=32.94 Aligned_cols=141 Identities=13% Similarity=0.136 Sum_probs=82.6
Q ss_pred CCCCcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEe
Q 020423 122 PEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKC 201 (326)
Q Consensus 122 ~~~~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~ 201 (326)
....|+++...+.+.++-.+.++.++++|+|++-+- .|...+.. ...+-+.+-.++|.++++.|+.+=-
T Consensus 78 ~grvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~--~P~y~~kp---------~~~~~l~~~f~~ia~a~~lPiilYn 146 (318)
T 3qfe_A 78 GPDFPIMAGVGAHSTRQVLEHINDASVAGANYVLVL--PPAYFGKA---------TTPPVIKSFFDDVSCQSPLPVVIYN 146 (318)
T ss_dssp CTTSCEEEECCCSSHHHHHHHHHHHHHHTCSEEEEC--CCCC---C---------CCHHHHHHHHHHHHHHCSSCEEEEE
T ss_pred CCCCcEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEe--CCcccCCC---------CCHHHHHHHHHHHHhhCCCCEEEEe
Confidence 345799999988999999999999999999999884 34321100 1356677788888888899998864
Q ss_pred ccCCC-CC-ccHHHHHHHHHHHhhh-CCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCC--CceEEEeCCC
Q 020423 202 RIGVD-DH-DSYNQLCDFIYKVSSL-SPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFP--DLTFTLNGGI 276 (326)
Q Consensus 202 r~g~~-~~-~~~~e~~~~ia~~le~-~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~--~iPVIa~GgI 276 (326)
-++.. .. -+.+ + +.++.++ -.+-.|--+.+ ++..+.++.+... ++. +.+|.
T Consensus 147 ~P~~t~g~~l~~~-~---~~~La~~~pnIvgiKdssg------------------d~~~~~~~~~~~~~~~f~-v~~G~- 202 (318)
T 3qfe_A 147 FPGVCNGIDLDSD-M---ITTIARKNPNVVGVKLTCA------------------SVGKITRLAATLPPAAFS-VFGGQ- 202 (318)
T ss_dssp CCC----CCCCHH-H---HHHHHHHCTTEEEEEESSC------------------CHHHHHHHHHHSCGGGCE-EEESC-
T ss_pred CCcccCCCCCCHH-H---HHHHHhhCCCEEEEEeCCC------------------CHHHHHHHHHhcCCCCEE-EEEec-
Confidence 44321 11 1232 2 2333332 23433332211 2444445544331 333 34443
Q ss_pred CCHHHHHHHHHhCCChhhhhHHH
Q 020423 277 NTVDEVNAALRKGAHHVMVGRAA 299 (326)
Q Consensus 277 ~s~~da~~~l~~GaD~V~iGRal 299 (326)
-+.+...+..|++++..+.+-
T Consensus 203 --d~~~l~~l~~G~~G~is~~an 223 (318)
T 3qfe_A 203 --SDFLIGGLSVGSAGCIAAFAN 223 (318)
T ss_dssp --GGGHHHHHHTTCCEEECGGGG
T ss_pred --HHHHHHHHHCCCCEEEecHHH
Confidence 123456677888888777653
|
| >1vr6_A Phospho-2-dehydro-3-deoxyheptonate aldolase; TM0343, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative; 1.92A {Thermotoga maritima} SCOP: c.1.10.4 PDB: 1rzm_A* 3pg9_A* 3pg8_A* | Back alignment and structure |
|---|
Probab=87.09 E-value=3.4 Score=38.30 Aligned_cols=108 Identities=18% Similarity=0.183 Sum_probs=60.7
Q ss_pred cccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEE--ecCCcccCCCCcCCcCC
Q 020423 172 GVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFII--HSRKALLNGISPAENRT 249 (326)
Q Consensus 172 Ggsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v--~~~~~~~~g~~~~~~~~ 249 (326)
|+..+++..++.++- ..+.||.+|-... .+++|+...+. .+...|-.-+++ +|... +.+ +.
T Consensus 196 gAr~~~n~~LL~~va-----~~~kPVilk~G~~----~tl~ei~~Ave-~i~~~GN~~viLceRG~~t-yp~------~~ 258 (350)
T 1vr6_A 196 GARNAQNFRLLSKAG-----SYNKPVLLKRGFM----NTIEEFLLSAE-YIANSGNTKIILCERGIRT-FEK------AT 258 (350)
T ss_dssp CGGGTTCHHHHHHHH-----TTCSCEEEECCTT----CCHHHHHHHHH-HHHHTTCCCEEEEECCBCC-SCC------SS
T ss_pred CcccccCHHHHHHHH-----ccCCcEEEcCCCC----CCHHHHHHHHH-HHHHCCCCeEEEEeCCCCC-CCC------cC
Confidence 555556676666553 4689999984442 24555555333 334577644444 33221 111 11
Q ss_pred CCCccHHHHHHHHhcCCCceEEE-e---CCCCC--HHHHHHHHHhCCChhhhhH
Q 020423 250 IPPLKYEYYYALLRDFPDLTFTL-N---GGINT--VDEVNAALRKGAHHVMVGR 297 (326)
Q Consensus 250 ~~~~~~~~i~~i~~~~~~iPVIa-~---GgI~s--~~da~~~l~~GaD~V~iGR 297 (326)
....++..+..+++.+ ++||++ + +|-++ ..-+..++..|||+++|=+
T Consensus 259 ~~~vdl~ai~~lk~~~-~lpVi~dssHs~G~~~~v~~~a~AAvA~GA~Gl~IE~ 311 (350)
T 1vr6_A 259 RNTLDISAVPIIRKES-HLPILVDPSHSGGRRDLVIPLSRAAIAVGAHGIIVEV 311 (350)
T ss_dssp SSBCCTTHHHHHHHHB-SSCEEECHHHHHCSGGGHHHHHHHHHHHTCSEEEEEB
T ss_pred hhhhhHHHHHHHHHhh-CCCEEEeCCCCCcccchHHHHHHHHHHhCCCEEEEEe
Confidence 2234555666666554 789877 2 24333 4556667778999888754
|
| >3ekg_A Mandelate racemase/muconate lactonizing enzyme; structural genomics, nysgrc, L-rhamnonate dehydratase,target PSI-2; HET: TLA; 1.60A {Azotobacter vinelandii avop} PDB: 2oz3_A* | Back alignment and structure |
|---|
Probab=87.03 E-value=3.1 Score=39.32 Aligned_cols=118 Identities=14% Similarity=0.087 Sum_probs=73.4
Q ss_pred HHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCC--CcEEEEeccCCCCCccHHHHHHHHHHHhh
Q 020423 146 ANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTN--VPVSVKCRIGVDDHDSYNQLCDFIYKVSS 223 (326)
Q Consensus 146 a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~--~pv~vK~r~g~~~~~~~~e~~~~ia~~le 223 (326)
+++.||..+-+..+.... .|. ...+.-.+.+++||+++| .++.+-...+| +.++..+ +.+.++
T Consensus 170 ~~~~Gf~~~K~Kv~~g~~-------~g~---~~~~~di~~v~avRea~G~~~~L~vDaN~~w----~~~~A~~-~~~~Le 234 (404)
T 3ekg_A 170 AQKMGFIGGKMPLHHGPS-------EGE---EGLKKNLEELATMRERVGPDFWLMFDCWMSL----DLNYATR-LARGAR 234 (404)
T ss_dssp HHHTTCSEEEEECCCCGG-------GHH---HHHHHHHHHHHHHHHHHCSSSEEEEECTTCC----CHHHHHH-HHHHHG
T ss_pred HHHcCCCEEEEecCCCCc-------ccc---ccHHHHHHHHHHHHHHhCCCCeEEecCCCCC----CHHHHHH-HHHHHh
Confidence 457899999997641100 021 124556778889998875 44544443344 3445555 345667
Q ss_pred hCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceE-EEeC-CCCCHHHHHHHHHhC-CChhhh
Q 020423 224 LSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTF-TLNG-GINTVDEVNAALRKG-AHHVMV 295 (326)
Q Consensus 224 ~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPV-Ia~G-gI~s~~da~~~l~~G-aD~V~i 295 (326)
+.++.+|. . ..++.+++.++++.+.. ++|| |+.| .+.+..++.++++.| +|.|++
T Consensus 235 ~~~l~~iE----e------------P~~~~d~~~~a~l~~~~-~~pi~Ia~gE~~~~~~~~~~li~~~a~dii~~ 292 (404)
T 3ekg_A 235 EYGLKWIE----E------------ALPPDDYWGYAELRRNA-PTGMMVTTGEHEATRWGFRMLLEMGCCDIIQP 292 (404)
T ss_dssp GGTCCEEE----C------------CSCTTCHHHHHHHHHHS-CTTCEEEECTTCCHHHHHHHHHHTTCCSEECC
T ss_pred hcCCcEEe----c------------CCCcccHHHHHHHHHhc-CCCeEEEecCccCCHHHHHHHHHcCCCCeEec
Confidence 88888874 1 12334577777777765 6664 3444 578889999999865 777765
|
| >3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4 | Back alignment and structure |
|---|
Probab=87.03 E-value=1.8 Score=38.67 Aligned_cols=111 Identities=13% Similarity=0.062 Sum_probs=63.1
Q ss_pred HHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCC--cccCCCCcCC------cCCCC-C
Q 020423 182 VGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRK--ALLNGISPAE------NRTIP-P 252 (326)
Q Consensus 182 l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~--~~~~g~~~~~------~~~~~-~ 252 (326)
+.+..+.+++.-...+..-+..|+.+. +...+ +.+.++++|+|.|.+.--. +...|..=.. ..... .
T Consensus 7 i~~~f~~~~~~~~~ali~yi~aGdP~~---~~~~~-~~~~l~~~GaD~iElGiPfSDP~aDGpvIq~a~~rAL~~G~~~~ 82 (271)
T 3nav_A 7 YQALFQRLSAAQQGAFVPFVTIGDPNP---EQSLA-IMQTLIDAGADALELGMPFSDPLADGPTIQGANLRALAAKTTPD 82 (271)
T ss_dssp HHHHHHHHHHTTBCEEEEEEETTSSCH---HHHHH-HHHHHHHTTCSSEEEECCCCCGGGCCSHHHHHHHHHHHTTCCHH
T ss_pred HHHHHHHHHhcCCCeEEEEEeCCCCCH---HHHHH-HHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHH
Confidence 556666766654556666777776553 34444 3445678999999986332 1111110000 00000 0
Q ss_pred ccHHHHHHHHhcCCCceEEEeCCCC-----C-HHHHHHHHHhCCChhhhh
Q 020423 253 LKYEYYYALLRDFPDLTFTLNGGIN-----T-VDEVNAALRKGAHHVMVG 296 (326)
Q Consensus 253 ~~~~~i~~i~~~~~~iPVIa~GgI~-----s-~~da~~~l~~GaD~V~iG 296 (326)
-.++.+++++++.+++||+.-|-.+ . .+-+.++.+.|+|+|.+.
T Consensus 83 ~~~~~v~~~r~~~~~~Pivlm~Y~n~v~~~g~~~f~~~~~~aGvdGvIip 132 (271)
T 3nav_A 83 ICFELIAQIRARNPETPIGLLMYANLVYARGIDDFYQRCQKAGVDSVLIA 132 (271)
T ss_dssp HHHHHHHHHHHHCTTSCEEEEECHHHHHHTCHHHHHHHHHHHTCCEEEET
T ss_pred HHHHHHHHHHhcCCCCCEEEEecCcHHHHHhHHHHHHHHHHCCCCEEEEC
Confidence 1145677777665689998865322 1 334666777999998884
|
| >2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=86.99 E-value=4.5 Score=35.66 Aligned_cols=111 Identities=17% Similarity=0.175 Sum_probs=57.4
Q ss_pred HHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCc--ccCCCCcC------CcCCCC-C
Q 020423 182 VGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKA--LLNGISPA------ENRTIP-P 252 (326)
Q Consensus 182 l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~--~~~g~~~~------~~~~~~-~ 252 (326)
+.+..+..++.-...+..=+..|..+ .++..+ +++.++++|+|.|.+..... ...|..-. -..... .
T Consensus 4 ~~~~f~~~~~~~~~~~i~~i~~g~p~---~~~~~~-~~~~l~~~G~D~IElG~P~sdP~adgp~i~~a~~~al~~G~~~~ 79 (262)
T 2ekc_A 4 ISDKFTELKEKREKALVSYLMVGYPD---YETSLK-AFKEVLKNGTDILEIGFPFSDPVADGPTIQVAHEVALKNGIRFE 79 (262)
T ss_dssp HHHHHHHHHHHTBCEEEEEEETTSSC---HHHHHH-HHHHHHHTTCSEEEEECCCSCCTTSCHHHHHHHHHHHHTTCCHH
T ss_pred HHHHHHHHHhcCCceEEEEecCCCCC---hHHHHH-HHHHHHHcCCCEEEECCCCCCcccccHHHHHHHHHHHHcCCCHH
Confidence 34555555544333444445566544 334444 45567789999999953221 00000000 000000 0
Q ss_pred ccHHHHHHHHhcCCCceEEEeCCCCC------HHHHHHHHHhCCChhhhh
Q 020423 253 LKYEYYYALLRDFPDLTFTLNGGINT------VDEVNAALRKGAHHVMVG 296 (326)
Q Consensus 253 ~~~~~i~~i~~~~~~iPVIa~GgI~s------~~da~~~l~~GaD~V~iG 296 (326)
..++.+.++++..+++|++.-|-.+. .+.+..+.+.|+|++.+.
T Consensus 80 ~~~~~v~~ir~~~~~~Pi~~m~y~n~v~~~g~~~f~~~~~~aG~dgvii~ 129 (262)
T 2ekc_A 80 DVLELSETLRKEFPDIPFLLMTYYNPIFRIGLEKFCRLSREKGIDGFIVP 129 (262)
T ss_dssp HHHHHHHHHHHHCTTSCEEEECCHHHHHHHCHHHHHHHHHHTTCCEEECT
T ss_pred HHHHHHHHHHhhcCCCCEEEEecCcHHHHhhHHHHHHHHHHcCCCEEEEC
Confidence 01345667766644899988643321 245566777999998884
|
| >4hb7_A Dihydropteroate synthase; transferase; 1.95A {Staphylococcus aureus} PDB: 1ad1_A 1ad4_A* | Back alignment and structure |
|---|
Probab=86.90 E-value=4.1 Score=36.29 Aligned_cols=60 Identities=20% Similarity=0.160 Sum_probs=38.0
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEE
Q 020423 135 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVK 200 (326)
Q Consensus 135 ~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK 200 (326)
+.+...+.|+...+.|+|.|||..-+-.+ +.---+.+...+.+.-+++++++ .++|++|-
T Consensus 28 ~~~~a~~~a~~m~~~GAdiIDIGgeSTRP-----ga~~vs~eeE~~Rv~pvi~~l~~-~~v~iSID 87 (270)
T 4hb7_A 28 NVETAINRVKAMIDEGADIIDVGGVSTRP-----GHEMVTLEEELNRVLPVVEAIVG-FDVKISVD 87 (270)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEEESCCCST-----TCCCCCHHHHHHHHHHHHHHHTT-SSSEEEEE
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCccCCC-----CCCCCchHHHHHHHHHHHHHhhc-CCCeEEEE
Confidence 45666677777888999999997543322 11112233345567777777764 57788775
|
| >1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ... | Back alignment and structure |
|---|
Probab=86.68 E-value=2.1 Score=38.03 Aligned_cols=127 Identities=9% Similarity=-0.013 Sum_probs=63.7
Q ss_pred HHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCc--ccCCCCcC------CcCCCC-C
Q 020423 182 VGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKA--LLNGISPA------ENRTIP-P 252 (326)
Q Consensus 182 l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~--~~~g~~~~------~~~~~~-~ 252 (326)
+.+..+..++.-...+..-+-.|..+ .+++.+ +++.++++|+|+|++..... ...|..-. -..... .
T Consensus 4 ~~~~f~~~~~~~~~~~i~~i~~gdp~---~~~~~~-~~~~l~~~GaD~ieig~P~sdp~~DG~~i~~a~~~al~~G~~~~ 79 (268)
T 1qop_A 4 YENLFAQLNDRREGAFVPFVTLGDPG---IEQSLK-IIDTLIDAGADALELGVPFSDPLADGPTIQNANLRAFAAGVTPA 79 (268)
T ss_dssp HHHHHHHHHHTTCCEEEEEEETTSSC---HHHHHH-HHHHHHHTTCSSEEEECCCSCCTTCCHHHHHHHHHHHHTTCCHH
T ss_pred HHHHHHHHHhcCCceEEEEeeCCCCC---HHHHHH-HHHHHHHCCCCEEEECCCCCCccCCCHHHHHHHHHHHHcCCCHH
Confidence 44555555544333444455555433 334444 34566789999999964221 01110000 000000 0
Q ss_pred ccHHHHHHHHhcCCCceEEEeCCCCC------HHHHHHHHHhCCChhhhhHHHHhCCchhHHhHHH
Q 020423 253 LKYEYYYALLRDFPDLTFTLNGGINT------VDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDT 312 (326)
Q Consensus 253 ~~~~~i~~i~~~~~~iPVIa~GgI~s------~~da~~~l~~GaD~V~iGRall~dP~l~~~~i~~ 312 (326)
..++.++++++..+++||++-+..+. .+.+..+.+.|+|++.+--..+.+..-+.+.+++
T Consensus 80 ~~~~~v~~ir~~~~~~Pv~lm~y~n~v~~~g~~~~~~~~~~aGadgii~~d~~~e~~~~~~~~~~~ 145 (268)
T 1qop_A 80 QCFEMLAIIREKHPTIPIGLLMYANLVFNNGIDAFYARCEQVGVDSVLVADVPVEESAPFRQAALR 145 (268)
T ss_dssp HHHHHHHHHHHHCSSSCEEEEECHHHHHTTCHHHHHHHHHHHTCCEEEETTCCGGGCHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCEEEEEcccHHHHhhHHHHHHHHHHcCCCEEEEcCCCHHHHHHHHHHHHH
Confidence 01345677776646899887532211 3566777779999888754433333333444443
|
| >3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=86.64 E-value=0.8 Score=41.66 Aligned_cols=87 Identities=15% Similarity=0.100 Sum_probs=48.4
Q ss_pred cHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcC-CCceEEEe-CCCCCHHHHHHH--
Q 020423 210 SYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF-PDLTFTLN-GGINTVDEVNAA-- 285 (326)
Q Consensus 210 ~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~-~~iPVIa~-GgI~s~~da~~~-- 285 (326)
+.+.+.+.+ +.+.+.|+|.|.+-|.++....++. ....+.+...++.. .++|||+. |+..+.+.++.+
T Consensus 35 D~~~l~~lv-~~li~~Gv~gl~v~GttGE~~~Ls~-------~Er~~v~~~~~~~~~grvpviaGvg~~st~~ai~la~~ 106 (304)
T 3cpr_A 35 DIAAGREVA-AYLVDKGLDSLVLAGTTGESPTTTA-------AEKLELLKAVREEVGDRAKLIAGVGTNNTRTSVELAEA 106 (304)
T ss_dssp CHHHHHHHH-HHHHHTTCCEEEESSTTTTTTTSCH-------HHHHHHHHHHHHHHTTTSEEEEECCCSCHHHHHHHHHH
T ss_pred CHHHHHHHH-HHHHHcCCCEEEECccccChhhCCH-------HHHHHHHHHHHHHhCCCCcEEecCCCCCHHHHHHHHHH
Confidence 444444433 3445689999999876642111111 01123333333332 36898765 554444443332
Q ss_pred -HHhCCChhhhhHHHHhCCc
Q 020423 286 -LRKGAHHVMVGRAAYQNPW 304 (326)
Q Consensus 286 -l~~GaD~V~iGRall~dP~ 304 (326)
.+.|||++++-.+.+..|.
T Consensus 107 A~~~Gadavlv~~P~y~~~~ 126 (304)
T 3cpr_A 107 AASAGADGLLVVTPYYSKPS 126 (304)
T ss_dssp HHHTTCSEEEEECCCSSCCC
T ss_pred HHhcCCCEEEECCCCCCCCC
Confidence 2379999999988776664
|
| >1o60_A 2-dehydro-3-deoxyphosphooctonate aldolase; structural genomics, transferase; 1.80A {Haemophilus influenzae} SCOP: c.1.10.4 PDB: 3e9a_A | Back alignment and structure |
|---|
Probab=86.58 E-value=2.2 Score=38.59 Aligned_cols=109 Identities=12% Similarity=0.087 Sum_probs=55.9
Q ss_pred cccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEE-ecCCcccCCCCcCCcCCC
Q 020423 172 GVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFII-HSRKALLNGISPAENRTI 250 (326)
Q Consensus 172 Ggsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v-~~~~~~~~g~~~~~~~~~ 250 (326)
|+..+.+.++++++ . ..+.||.+|-.... +++|+...+ ..+...|-+-+++ +-+. .+ ++. .
T Consensus 115 gA~~~~n~~Ll~~~----a-~~~kPV~lk~G~~~----t~~ei~~Av-~~i~~~Gn~~i~L~~rg~-~~-~y~------~ 176 (292)
T 1o60_A 115 PAFLARQTDLVEAM----A-KTGAVINVKKPQFL----SPSQMGNIV-EKIEECGNDKIILCDRGT-NF-GYD------N 176 (292)
T ss_dssp CGGGTTCHHHHHHH----H-HTTCEEEEECCTTS----CGGGHHHHH-HHHHHTTCCCEEEEECCE-EC-STT------C
T ss_pred CcccccCHHHHHHH----H-cCCCcEEEeCCCCC----CHHHHHHHH-HHHHHcCCCeEEEEECCC-CC-CCC------c
Confidence 55555666654443 3 46899999955431 222333332 3345578654444 4332 11 110 0
Q ss_pred CCccHHHHHHHHhcCCCceEEE-----------eCCCCCH------HHHHHHHHhCCChhhhhHH
Q 020423 251 PPLKYEYYYALLRDFPDLTFTL-----------NGGINTV------DEVNAALRKGAHHVMVGRA 298 (326)
Q Consensus 251 ~~~~~~~i~~i~~~~~~iPVIa-----------~GgI~s~------~da~~~l~~GaD~V~iGRa 298 (326)
...+...+..+++.++++||+. +|+-... .-+..++..|||+++|=+-
T Consensus 177 ~~~dl~~i~~lk~~~~~~pV~~D~sH~~q~p~~~~~~~~g~~~~~~~ia~aAva~Ga~Gl~IE~H 241 (292)
T 1o60_A 177 LIVDMLGFSVMKKASKGSPVIFDVTHSLQCRDPFGAASSGRRAQVTELARSGLAVGIAGLFLEAH 241 (292)
T ss_dssp EECCTTHHHHHHHHTTSCCEEEEHHHHCC------------CTTHHHHHHHHHHHCCSEEEEEEE
T ss_pred cccCHHHHHHHHhhCCCCCEEEECCCcccccCccccCCCCChhHHHHHHHHHHHcCCCEEEEEec
Confidence 1134555656666554789988 2222222 3455666789998887543
|
| >1zco_A 2-dehydro-3-deoxyphosphoheptonate aldolase; arabino-heptulosonate, synthase, shikimate, DAHP, DAH7P, DAH DAH7PS, lyase; HET: PEP; 2.25A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=86.47 E-value=4.5 Score=35.86 Aligned_cols=110 Identities=16% Similarity=0.109 Sum_probs=58.7
Q ss_pred cccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEE-EecCCcccCCCCcCCcCCC
Q 020423 172 GVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFI-IHSRKALLNGISPAENRTI 250 (326)
Q Consensus 172 Ggsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~-v~~~~~~~~g~~~~~~~~~ 250 (326)
|+...++..+++++.+ .+.||.+|-... .+++++.+.+. .+...|...++ +|-+.....++ ..
T Consensus 113 ga~~~~n~~ll~~~a~-----~~kPV~lk~G~~----~t~~e~~~Av~-~i~~~Gn~~i~L~~RG~~~~~~y------~~ 176 (262)
T 1zco_A 113 GARNSQNFELLKEVGK-----VENPVLLKRGMG----NTIQELLYSAE-YIMAQGNENVILCERGIRTFETA------TR 176 (262)
T ss_dssp CGGGTTCHHHHHHHTT-----SSSCEEEECCTT----CCHHHHHHHHH-HHHTTTCCCEEEEECCBCCSCCS------SS
T ss_pred CcccccCHHHHHHHHh-----cCCcEEEecCCC----CCHHHHHHHHH-HHHHCCCCeEEEEECCCCCCCCc------Ch
Confidence 3334455555555432 689999984442 24566666443 44567764444 45321111111 11
Q ss_pred CCccHHHHHHHHhcCCCceEEEe----CCCCC--HHHHHHHHHhCCChhhhhHH
Q 020423 251 PPLKYEYYYALLRDFPDLTFTLN----GGINT--VDEVNAALRKGAHHVMVGRA 298 (326)
Q Consensus 251 ~~~~~~~i~~i~~~~~~iPVIa~----GgI~s--~~da~~~l~~GaD~V~iGRa 298 (326)
...+...+..+++.+ ++|||+- +|... +.-+..+...||++++|=+-
T Consensus 177 ~~v~L~ai~~lk~~~-~~pVi~d~sH~~g~~~~v~~~~~aAva~Ga~Gl~iE~H 229 (262)
T 1zco_A 177 FTLDISAVPVVKELS-HLPIIVDPSHPAGRRSLVIPLAKAAYAIGADGIMVEVH 229 (262)
T ss_dssp SBCCTTHHHHHHHHB-SSCEEECSSTTTCSGGGHHHHHHHHHHTTCSEEEEEBC
T ss_pred hhcCHHHHHHHHhhh-CCCEEEEcCCCCCccchHHHHHHHHHHcCCCEEEEEec
Confidence 223445565665554 7898664 33322 13355567789998887654
|
| >1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A | Back alignment and structure |
|---|
Probab=86.42 E-value=0.41 Score=41.78 Aligned_cols=56 Identities=11% Similarity=-0.025 Sum_probs=38.2
Q ss_pred HHHHHHHHhcCCCceEEEeCCCCC------HHHHHHHHHhCCChhhhhHHHHhCCchhHHhHH
Q 020423 255 YEYYYALLRDFPDLTFTLNGGINT------VDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVD 311 (326)
Q Consensus 255 ~~~i~~i~~~~~~iPVIa~GgI~s------~~da~~~l~~GaD~V~iGRall~dP~l~~~~i~ 311 (326)
.+.++++++. .++||..-++++. .+.++.+++.|||+|.++.....++..+.+.++
T Consensus 69 ~~~i~~i~~~-~~~pv~~~~~~~~~~~~~~~~~~~~~~~~Gad~v~~~~~~~~~~~~~~~~~~ 130 (248)
T 1geq_A 69 FWIVKEFRRH-SSTPIVLMTYYNPIYRAGVRNFLAEAKASGVDGILVVDLPVFHAKEFTEIAR 130 (248)
T ss_dssp HHHHHHHHTT-CCCCEEEEECHHHHHHHCHHHHHHHHHHHTCCEEEETTCCGGGHHHHHHHHH
T ss_pred HHHHHHHHhh-CCCCEEEEeccchhhhcCHHHHHHHHHHCCCCEEEECCCChhhHHHHHHHHH
Confidence 4566777665 4899887766554 478888889999999998544444443433333
|
| >3e96_A Dihydrodipicolinate synthase; structural genomics, nysgrc, target 9375C, operon, PSI-2; 1.80A {Bacillus clausii ksm-k16} SCOP: c.1.10.0 | Back alignment and structure |
|---|
Probab=86.30 E-value=5.1 Score=36.40 Aligned_cols=125 Identities=8% Similarity=-0.004 Sum_probs=74.2
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC--CCcEEEEeccCCCCCccHH
Q 020423 135 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYN 212 (326)
Q Consensus 135 ~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~--~~pv~vK~r~g~~~~~~~~ 212 (326)
+.+.+.+.+++..+.|.|+|-++.. +++ +.+| ..+.-.++++.+.+.+ .+||.+.+. . +..
T Consensus 31 D~~~l~~lv~~li~~Gv~Gl~v~Gt--------TGE-~~~L--s~eEr~~v~~~~v~~~~grvpViaGvg--~----~t~ 93 (316)
T 3e96_A 31 DWHHYKETVDRIVDNGIDVIVPCGN--------TSE-FYAL--SLEEAKEEVRRTVEYVHGRALVVAGIG--Y----ATS 93 (316)
T ss_dssp CHHHHHHHHHHHHTTTCCEECTTSG--------GGT-GGGS--CHHHHHHHHHHHHHHHTTSSEEEEEEC--S----SHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCcc--------ccC-cccC--CHHHHHHHHHHHHHHhCCCCcEEEEeC--c----CHH
Confidence 6788999999999999999988642 233 2222 2333344455544443 478888763 1 244
Q ss_pred HHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEE-e-CCCCCHHHHHHHHH
Q 020423 213 QLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTL-N-GGINTVDEVNAALR 287 (326)
Q Consensus 213 e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa-~-GgI~s~~da~~~l~ 287 (326)
+.++ .++..++.|+|.+-+.... +...+ ...-++++.++.+.. ++||+. | |--.+++.+.++.+
T Consensus 94 ~ai~-la~~A~~~Gadavlv~~P~--y~~~s-------~~~l~~~f~~va~a~-~lPiilYn~g~~l~~~~~~~La~ 159 (316)
T 3e96_A 94 TAIE-LGNAAKAAGADAVMIHMPI--HPYVT-------AGGVYAYFRDIIEAL-DFPSLVYFKDPEISDRVLVDLAP 159 (316)
T ss_dssp HHHH-HHHHHHHHTCSEEEECCCC--CSCCC-------HHHHHHHHHHHHHHH-TSCEEEEECCTTSCTHHHHHHTT
T ss_pred HHHH-HHHHHHhcCCCEEEEcCCC--CCCCC-------HHHHHHHHHHHHHhC-CCCEEEEeCCCCCCHHHHHHHHc
Confidence 5555 3556678999999876321 11100 011245566666554 788754 4 55567777766654
|
| >3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A | Back alignment and structure |
|---|
Probab=86.28 E-value=0.73 Score=41.93 Aligned_cols=87 Identities=13% Similarity=0.079 Sum_probs=49.6
Q ss_pred cHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcC-CCceEEEeCCCCCHHHHHHHH--
Q 020423 210 SYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF-PDLTFTLNGGINTVDEVNAAL-- 286 (326)
Q Consensus 210 ~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~-~~iPVIa~GgI~s~~da~~~l-- 286 (326)
+.+.+.+.+ +.+.+.|+|.|.+-|.++....++. ....+.+...++.. .++|||+.=|=.+.+++.+..
T Consensus 34 D~~~l~~lv-~~li~~Gv~gi~v~GttGE~~~Lt~-------~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~ 105 (304)
T 3l21_A 34 DTATAARLA-NHLVDQGCDGLVVSGTTGESPTTTD-------GEKIELLRAVLEAVGDRARVIAGAGTYDTAHSIRLAKA 105 (304)
T ss_dssp CHHHHHHHH-HHHHHTTCSEEEESSTTTTGGGSCH-------HHHHHHHHHHHHHHTTTSEEEEECCCSCHHHHHHHHHH
T ss_pred CHHHHHHHH-HHHHHcCCCEEEeCccccchhhCCH-------HHHHHHHHHHHHHhCCCCeEEEeCCCCCHHHHHHHHHH
Confidence 444544433 3445689999999876642111111 11123333333332 368988754444555544433
Q ss_pred --HhCCChhhhhHHHHhCCc
Q 020423 287 --RKGAHHVMVGRAAYQNPW 304 (326)
Q Consensus 287 --~~GaD~V~iGRall~dP~ 304 (326)
+.|||+|++..+.+..|.
T Consensus 106 a~~~Gadavlv~~P~y~~~s 125 (304)
T 3l21_A 106 CAAEGAHGLLVVTPYYSKPP 125 (304)
T ss_dssp HHHHTCSEEEEECCCSSCCC
T ss_pred HHHcCCCEEEECCCCCCCCC
Confidence 379999999988876664
|
| >3l9c_A 3-dehydroquinate dehydratase; AROD, amino-acid biosynthesis, aromatic amino acid biosynthe schiff base, lyase; 1.60A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=86.19 E-value=1.2 Score=39.57 Aligned_cols=94 Identities=13% Similarity=0.071 Sum_probs=56.4
Q ss_pred CCCcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHh-cCCCcEEEEe
Q 020423 123 EQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAA-NTNVPVSVKC 201 (326)
Q Consensus 123 ~~~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~-~~~~pv~vK~ 201 (326)
...++++.|.+.+.++.. .+..++..|+|.||+-.. .+. ...+.++.+.+++ ..+.|+.+-+
T Consensus 33 g~pkIcvpl~~~t~~e~~-~~~~~~~~gaD~VElRvD----------~l~------~~~~~~v~~~l~~~~~~~PiI~T~ 95 (259)
T 3l9c_A 33 GSMKIVVPVMPQNIEEAN-QLDLTRIDSTDIIEWRAD----------YLV------KDDILTVAPAIFEKFSGHEVIFTL 95 (259)
T ss_dssp -CCEEEEEECCSSHHHHH-HCCCTTCCTTCEEEEEGG----------GSC------GGGHHHHHHHHHHHTTTSEEEEEC
T ss_pred CCcEEEEEecCCCHHHHH-HHHHhhccCCCEEEEEec----------ccc------chhHHHHHHHHHHhcCCCcEEEEE
Confidence 345688999999988875 344455679999999542 222 1123344444544 4588999988
Q ss_pred ccCCCCC---ccHHHHHHHHHHHhhhCCccEEEEe
Q 020423 202 RIGVDDH---DSYNQLCDFIYKVSSLSPTRHFIIH 233 (326)
Q Consensus 202 r~g~~~~---~~~~e~~~~ia~~le~~Gvd~I~v~ 233 (326)
|..++.. .+-++-.+.+...++..|+|+|+|.
T Consensus 96 Rt~~EGG~~~~~~~~y~~ll~~~~~~~~~dyIDVE 130 (259)
T 3l9c_A 96 RTEKEGGNISLSNEDYLAIIRDIAALYQPDYIDFE 130 (259)
T ss_dssp CBGGGTCSBCCCHHHHHHHHHHHHHHHCCSEEEEE
T ss_pred eehhhCCCCCCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 8743321 1122333334444444689999996
|
| >2cw6_A Hydroxymethylglutaryl-COA lyase, mitochondrial; HMG-COA lyase, ketogenic enzyme; HET: 3HG; 2.10A {Homo sapiens} PDB: 3mp3_A* 3mp4_A 3mp5_A* | Back alignment and structure |
|---|
Probab=86.12 E-value=2 Score=38.78 Aligned_cols=139 Identities=14% Similarity=0.110 Sum_probs=76.2
Q ss_pred HHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEec--cCCCC--CccHHHHHHH
Q 020423 142 ATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCR--IGVDD--HDSYNQLCDF 217 (326)
Q Consensus 142 aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r--~g~~~--~~~~~e~~~~ 217 (326)
-.+++.++|+|.|.+-.+.... .....++.+.+...+.+.+.++.+++. |.++.+-+. .+.++ ..+.+.+.+
T Consensus 85 ~i~~a~~ag~~~v~i~~~~sd~--~~~~~~~~~~~e~l~~~~~~i~~a~~~-G~~v~~~l~~~~~~~~~~~~~~~~~~~- 160 (298)
T 2cw6_A 85 GFEAAVAAGAKEVVIFGAASEL--FTKKNINCSIEESFQRFDAILKAAQSA-NISVRGYVSCALGCPYEGKISPAKVAE- 160 (298)
T ss_dssp HHHHHHHTTCSEEEEEEESCHH--HHHHHHSCCHHHHHHHHHHHHHHHHHT-TCEEEEEEETTTCBTTTBSCCHHHHHH-
T ss_pred hHHHHHHCCCCEEEEEecCCHH--HHHHHhCCCHHHHHHHHHHHHHHHHHC-CCeEEEEEEEEeeCCcCCCCCHHHHHH-
Confidence 3566778899998885433211 111123333334445566666666553 666655444 33222 234556655
Q ss_pred HHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeC----CCCCHHHHHHHHHhCCChh
Q 020423 218 IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNG----GINTVDEVNAALRKGAHHV 293 (326)
Q Consensus 218 ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~G----gI~s~~da~~~l~~GaD~V 293 (326)
+.+.+.+.|+|.|.+.... |.. .|....+.+..+++..+++|+-.-+ |. -......+++.||+.|
T Consensus 161 ~~~~~~~~Ga~~i~l~DT~----G~~------~P~~~~~lv~~l~~~~~~~~i~~H~Hn~~Gl-a~An~laA~~aGa~~v 229 (298)
T 2cw6_A 161 VTKKFYSMGCYEISLGDTI----GVG------TPGIMKDMLSAVMQEVPLAALAVHCHDTYGQ-ALANTLMALQMGVSVV 229 (298)
T ss_dssp HHHHHHHTTCSEEEEEETT----SCC------CHHHHHHHHHHHHHHSCGGGEEEEEBCTTSC-HHHHHHHHHHTTCCEE
T ss_pred HHHHHHHcCCCEEEecCCC----CCc------CHHHHHHHHHHHHHhCCCCeEEEEECCCCch-HHHHHHHHHHhCCCEE
Confidence 4455678999999987532 211 1122245667777666567765532 22 1334566777888866
Q ss_pred hh
Q 020423 294 MV 295 (326)
Q Consensus 294 ~i 295 (326)
..
T Consensus 230 d~ 231 (298)
T 2cw6_A 230 DS 231 (298)
T ss_dssp EE
T ss_pred Ee
Confidence 43
|
| >3lmz_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS isomerase; HET: MSE CIT PGE; 1.44A {Parabacteroides distasonis} | Back alignment and structure |
|---|
Probab=86.08 E-value=9.9 Score=32.66 Aligned_cols=129 Identities=6% Similarity=-0.049 Sum_probs=70.8
Q ss_pred CcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccC
Q 020423 125 HPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIG 204 (326)
Q Consensus 125 ~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g 204 (326)
-++.+|.+......+.++.+.++++|||+||+....- . ++ ..++.+.++.+.+++ .|+.+..= ...
T Consensus 18 ~klg~~~~~~~~~~~~~~l~~~~~~G~~~vEl~~~~~-----~---~~----~~~~~~~~~~~~l~~-~gl~i~~~-~~~ 83 (257)
T 3lmz_A 18 FHLGMAGYTFVNFDLDTTLKTLERLDIHYLCIKDFHL-----P---LN----STDEQIRAFHDKCAA-HKVTGYAV-GPI 83 (257)
T ss_dssp SEEEECGGGGTTSCHHHHHHHHHHTTCCEEEECTTTS-----C---TT----CCHHHHHHHHHHHHH-TTCEEEEE-EEE
T ss_pred eEEEEEEEeecCCCHHHHHHHHHHhCCCEEEEecccC-----C---CC----CCHHHHHHHHHHHHH-cCCeEEEE-ecc
Confidence 4577777654444688899999999999999975410 0 11 235555555555543 45554321 111
Q ss_pred CCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEe-C-----CCCC
Q 020423 205 VDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLN-G-----GINT 278 (326)
Q Consensus 205 ~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~-G-----gI~s 278 (326)
.. ...+.+.+ ..+...+.|+..|.++.+. ..+..+.+..++. ++.+..- - -+.+
T Consensus 84 ~~--~~~~~~~~-~i~~A~~lGa~~v~~~p~~----------------~~l~~l~~~a~~~-gv~l~lEn~~~~~~~~~~ 143 (257)
T 3lmz_A 84 YM--KSEEEIDR-AFDYAKRVGVKLIVGVPNY----------------ELLPYVDKKVKEY-DFHYAIHLHGPDIKTYPD 143 (257)
T ss_dssp EE--CSHHHHHH-HHHHHHHHTCSEEEEEECG----------------GGHHHHHHHHHHH-TCEEEEECCCTTCSSSCS
T ss_pred cc--CCHHHHHH-HHHHHHHhCCCEEEecCCH----------------HHHHHHHHHHHHc-CCEEEEecCCCcccccCC
Confidence 11 22333333 2334456899999987431 1244454444443 4443321 1 2457
Q ss_pred HHHHHHHHH
Q 020423 279 VDEVNAALR 287 (326)
Q Consensus 279 ~~da~~~l~ 287 (326)
++++.++++
T Consensus 144 ~~~~~~ll~ 152 (257)
T 3lmz_A 144 ATDVWVHTK 152 (257)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHH
Confidence 777777775
|
| >1wbh_A KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} SCOP: c.1.10.1 PDB: 2c0a_A 1wau_A 1eua_A 1eun_A 1fq0_A* 1fwr_A* | Back alignment and structure |
|---|
Probab=86.07 E-value=2.4 Score=36.41 Aligned_cols=80 Identities=13% Similarity=0.140 Sum_probs=53.5
Q ss_pred CcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeC
Q 020423 195 VPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNG 274 (326)
Q Consensus 195 ~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~G 274 (326)
.|+..=+|.. +.++. .+ +.+.+.+.|++.+.+.-.+. ...+.++++.++++++ +++.|
T Consensus 16 ~~~i~v~r~~--~~~~~---~~-~~~al~~gGv~~iel~~k~~---------------~~~~~i~~l~~~~~~~-~vgag 73 (214)
T 1wbh_A 16 GPVVPVIVVK--KLEHA---VP-MAKALVAGGVRVLNVTLRTE---------------CAVDAIRAIAKEVPEA-IVGAG 73 (214)
T ss_dssp CSEEEEECCS--SGGGH---HH-HHHHHHHTTCCEEEEESCST---------------THHHHHHHHHHHCTTS-EEEEE
T ss_pred CCEEEEEECC--CHHHH---HH-HHHHHHHcCCCEEEEeCCCh---------------hHHHHHHHHHHHCcCC-EEeeC
Confidence 3555555552 22233 33 23344569999998874321 1256677777777654 56677
Q ss_pred CCCCHHHHHHHHHhCCChhhhh
Q 020423 275 GINTVDEVNAALRKGAHHVMVG 296 (326)
Q Consensus 275 gI~s~~da~~~l~~GaD~V~iG 296 (326)
-+.+.+++..+++.|||+|..+
T Consensus 74 tvi~~d~~~~A~~aGAd~v~~p 95 (214)
T 1wbh_A 74 TVLNPQQLAEVTEAGAQFAISP 95 (214)
T ss_dssp SCCSHHHHHHHHHHTCSCEEES
T ss_pred EEEEHHHHHHHHHcCCCEEEcC
Confidence 7999999999999999999877
|
| >2egz_A 3-dehydroquinate dehydratase; aquifex aeolicus VF5, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TLA; 1.75A {Aquifex aeolicus} PDB: 2ysw_A | Back alignment and structure |
|---|
Probab=85.67 E-value=4.4 Score=34.83 Aligned_cols=86 Identities=14% Similarity=0.161 Sum_probs=55.6
Q ss_pred EEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCC
Q 020423 127 IVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVD 206 (326)
Q Consensus 127 iivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~ 206 (326)
+++.|.+.+.++..+.++. +|+|.||+-... +.. ...+.+.+++..+|+. +.|+.+-+|..++
T Consensus 3 icv~l~~~~~~~~~~~~~~---~~~D~vElRvD~----------l~~---~~~~~v~~~~~~lr~~-~~PiI~T~R~~~e 65 (219)
T 2egz_A 3 IAVPLDDTNFSENLKKAKE---KGADIVELRVDQ----------FSD---TSLNYVKEKLEEVHSQ-GLKTILTIRSPEE 65 (219)
T ss_dssp EEEEECSTTHHHHHHHHHH---HTCSEEEEEGGG----------CSC---CCHHHHHHHHHHHHHT-TCEEEEECCCGGG
T ss_pred EEEEeCCCCHHHHHHHHHH---cCCCEEEEEecc----------ccc---cCHHHHHHHHHHHHhc-CCcEEEEEeehhc
Confidence 5678888887776555444 489999996532 110 1246788888999886 7999998886433
Q ss_pred ---CCccHHHHHHHHHHHhhhCCccEEEEec
Q 020423 207 ---DHDSYNQLCDFIYKVSSLSPTRHFIIHS 234 (326)
Q Consensus 207 ---~~~~~~e~~~~ia~~le~~Gvd~I~v~~ 234 (326)
+.+...++ +...+ +. +|+|+|.-
T Consensus 66 GG~~~~~~~~l---l~~~~-~~-~d~iDvEl 91 (219)
T 2egz_A 66 GGREVKNREEL---FEELS-PL-SDYTDIEL 91 (219)
T ss_dssp TCCCCTTHHHH---HHHHT-TT-SSEEEEET
T ss_pred cCCCHHHHHHH---HHHHH-hc-CCEEEEEc
Confidence 22233333 33333 34 89999864
|
| >3g8r_A Probable spore coat polysaccharide biosynthesis P; structural genomics, protein structure initiative; 2.49A {Chromobacterium violaceum atcc 12472} | Back alignment and structure |
|---|
Probab=85.66 E-value=11 Score=34.96 Aligned_cols=50 Identities=8% Similarity=0.055 Sum_probs=39.2
Q ss_pred HhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHH
Q 020423 221 VSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR 287 (326)
Q Consensus 221 ~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~ 287 (326)
.+++.|+|.+-|..++- .++.+++++.+. +.|||.+-|..|.+++..+++
T Consensus 106 ~l~~~~v~~~KI~S~~~---------------~N~pLL~~va~~--gKPviLstGmstl~Ei~~Ave 155 (350)
T 3g8r_A 106 LIEAHGIEIIKIASCSF---------------TDWPLLERIARS--DKPVVASTAGARREDIDKVVS 155 (350)
T ss_dssp HHHHTTCCEEEECSSST---------------TCHHHHHHHHTS--CSCEEEECTTCCHHHHHHHHH
T ss_pred HHHHcCCCEEEECcccc---------------cCHHHHHHHHhh--CCcEEEECCCCCHHHHHHHHH
Confidence 44568999999977642 247788777653 899999999999999888776
|
| >3oix_A Putative dihydroorotate dehydrogenase; dihydrooro oxidase; TIM barrel, oxidoreductase; HET: MLY FMN; 2.40A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=85.61 E-value=17 Score=33.44 Aligned_cols=141 Identities=6% Similarity=-0.067 Sum_probs=71.0
Q ss_pred HHHHHHHHCCCCEEEecCCCCC-------CcccCCCCccccccCC-------HH-HHHHHHHHHHhcCCCcEEEEeccCC
Q 020423 141 KATELANAYNYDEINLNCGCPS-------PKVAGHGCFGVSLMLD-------PK-FVGEAMSVIAANTNVPVSVKCRIGV 205 (326)
Q Consensus 141 ~aA~~a~~aG~d~Iein~g~P~-------~~~~r~d~yGgsl~~r-------~~-~l~eiv~avr~~~~~pv~vK~r~g~ 205 (326)
+..+.+.+.||-+|++..-.|. +...+.. ..+.|+ .+ ++.++.+..++..+.|+.+-+.-
T Consensus 63 e~~~~~~~~G~G~v~~ktvt~~pq~gnp~PR~~~~~---~~~iN~~G~~n~G~~~~~~~l~~~~~~~~~~pvivsI~g-- 137 (345)
T 3oix_A 63 EELAAIDHSEAGSFVTXTGTLEERAGNPQPRYADTK---LGSINSMGLPNLGINYYLDYVTELQKQPDSKNHFLSLVG-- 137 (345)
T ss_dssp HHHHHHHTSSCSBCBCCCBCSSCBCCSCSCCEEECS---SEEEECCCCCBSCHHHHHHHHHHHHHSTTCCCCEEEECC--
T ss_pred HHHHHHHHcCCCeEEeeeecCCCCCCCCCCcEEecc---cchhccCCCCChhHHHHHHHHHHHhhccCCCCEEEEecC--
Confidence 4455667889999998643322 2222221 112222 23 33333333334467898887643
Q ss_pred CCCccHHHHHHHHHHHhhhCCcc-EEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEE--eCCCCCHHHH
Q 020423 206 DDHDSYNQLCDFIYKVSSLSPTR-HFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTL--NGGINTVDEV 282 (326)
Q Consensus 206 ~~~~~~~e~~~~ia~~le~~Gvd-~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa--~GgI~s~~da 282 (326)
.+.++..+ .++.++++|.| +|.+.-.-+...|... ...-+....+.+..++ +..++||+. .-+ .+.+++
T Consensus 138 ---~~~~d~~~-~a~~l~~~g~~d~ielNisCPn~~G~~~--l~~~~e~l~~il~av~-~~~~~PV~vKi~p~-~~~~~~ 209 (345)
T 3oix_A 138 ---MSPEETHT-ILXMVEASKYQGLVELNLSCPNVPGXPQ--IAYDFETTDQILSEVF-TYFTKPLGIKLPPY-FDIVHF 209 (345)
T ss_dssp ---SSHHHHHH-HHHHHHHSSCCSEEEEECSCCCSTTCCC--GGGCHHHHHHHHHHHT-TTCCSCEEEEECCC-CCHHHH
T ss_pred ---CCHHHHHH-HHHHHhccCCCcEEEEecCCCCcCCchh--hcCCHHHHHHHHHHHH-HHhCCCeEEEECCC-CCHHHH
Confidence 23455555 45566778877 9988643321122110 0000001123333333 345789865 233 467776
Q ss_pred HHHHH-hCCChhh
Q 020423 283 NAALR-KGAHHVM 294 (326)
Q Consensus 283 ~~~l~-~GaD~V~ 294 (326)
.++++ .|+|+|.
T Consensus 210 a~~~~~aga~~i~ 222 (345)
T 3oix_A 210 DQAAAIFNXYPLT 222 (345)
T ss_dssp HHHHHHHTTSCCS
T ss_pred HHHHHHhCCCceE
Confidence 66666 7887764
|
| >3uj2_A Enolase 1; enzyme function initiative, EFI, lyase; 2.00A {Anaerostipes caccae} | Back alignment and structure |
|---|
Probab=85.56 E-value=6 Score=37.95 Aligned_cols=100 Identities=5% Similarity=0.114 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHhc---CCCcEEEEeccC----CCC------------CccHHHHHHHHHHHhhhCCccEEEEecCCcccC
Q 020423 180 KFVGEAMSVIAAN---TNVPVSVKCRIG----VDD------------HDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLN 240 (326)
Q Consensus 180 ~~l~eiv~avr~~---~~~pv~vK~r~g----~~~------------~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~ 240 (326)
+.+..+.++||++ +|..+.+-+-.. |+. .-+.++.++++.+++++.++.+|. +
T Consensus 241 e~l~~i~~AIr~agy~~G~dv~l~vD~aase~~~~~~g~Y~l~~~~~~~t~~eai~~~~~lle~y~i~~IE----d---- 312 (449)
T 3uj2_A 241 EAIEYILEAVKLAGYEPGRDFVLAMDAASSEWKGEKKGEYILPKCKRKFASEELVAHWKSLCERYPIVSIE----D---- 312 (449)
T ss_dssp HHHHHHHHHHHHTTCCBTTTBEEEEECCGGGCBCSSTTEEECTTTCCEEEHHHHHHHHHHHHHHSCEEEEE----S----
T ss_pred HHHHHHHHHHHHhccccCCceEEEEEcchhhhccccCceeeccCcccccCHHHHHHHHHHHHHhcCceEEE----C----
Confidence 3344455899887 654444433332 110 125677777766778888877763 1
Q ss_pred CCCcCCcCCCCCccHHHHHHHHhcCC-CceEEEeCCCC-CHHHHHHHHHhC-CChhhh
Q 020423 241 GISPAENRTIPPLKYEYYYALLRDFP-DLTFTLNGGIN-TVDEVNAALRKG-AHHVMV 295 (326)
Q Consensus 241 g~~~~~~~~~~~~~~~~i~~i~~~~~-~iPVIa~GgI~-s~~da~~~l~~G-aD~V~i 295 (326)
..++-+|+.++++.+... .+||++-=-+. ++.++.++++.+ +|.|++
T Consensus 313 --------Pl~~dD~eg~~~L~~~~~~~ipI~gDE~~~tn~~~~~~~i~~~a~d~i~i 362 (449)
T 3uj2_A 313 --------GLDEEDWEGWQYMTRELGDKIQLVGDDLFVTNTERLNKGIKERCGNSILI 362 (449)
T ss_dssp --------CSCTTCHHHHHHHHHHHTTTSEEEESTTTTTCHHHHHHHHHTTCCSEEEE
T ss_pred --------CCCcchHHHHHHHHHHhCCCceEECCcceeCCHHHHHHHHHcCCCCEEEE
Confidence 123345777777766542 57766433343 699999999965 777664
|
| >3sgz_A Hydroxyacid oxidase 2; flavoprotein, homology, INH oxidoreductase-oxidoreductase inhibitor complex; HET: FMN HO6; 1.35A {Rattus norvegicus} PDB: 1tb3_A* | Back alignment and structure |
|---|
Probab=85.48 E-value=4.5 Score=37.52 Aligned_cols=43 Identities=19% Similarity=0.271 Sum_probs=36.0
Q ss_pred CCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhh
Q 020423 251 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMV 295 (326)
Q Consensus 251 ~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~i 295 (326)
+...|+.++.+++.. ++||+.-| +.+.+++..+.+.|+|+|.+
T Consensus 202 ~~~~w~~i~~lr~~~-~~PvivK~-v~~~e~A~~a~~~GaD~I~v 244 (352)
T 3sgz_A 202 ASFCWNDLSLLQSIT-RLPIILKG-ILTKEDAELAMKHNVQGIVV 244 (352)
T ss_dssp TTCCHHHHHHHHHHC-CSCEEEEE-ECSHHHHHHHHHTTCSEEEE
T ss_pred CCCCHHHHHHHHHhc-CCCEEEEe-cCcHHHHHHHHHcCCCEEEE
Confidence 345689998888775 89998765 57999999999999999987
|
| >2dqw_A Dihydropteroate synthase; dimer, structural genomics; 1.65A {Thermus thermophilus} PDB: 2dza_A* 2dzb_A* | Back alignment and structure |
|---|
Probab=85.44 E-value=2.9 Score=37.86 Aligned_cols=59 Identities=19% Similarity=0.194 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEE
Q 020423 136 LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVK 200 (326)
Q Consensus 136 ~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK 200 (326)
.+...+.|+...+.|+|.|||++-+..+... .-+.+...+.+..+++++++. +.|+++-
T Consensus 51 ~~~a~~~a~~~v~~GAdIIDIGgeSTrPga~-----~v~~~eE~~Rv~pvI~~l~~~-~vpiSID 109 (294)
T 2dqw_A 51 PERALERAREMVAEGADILDLGAESTRPGAA-----PVPVEEEKRRLLPVLEAVLSL-GVPVSVD 109 (294)
T ss_dssp --CCHHHHHHHHHHTCSEEEEECC----------------CCHHHHHHHHHHHHHTT-CSCEEEE
T ss_pred HHHHHHHHHHHHHCCCCEEEECCCcCCCCCC-----CCCHHHHHHHHHHHHHHHHhC-CCeEEEE
Confidence 4455566777778899999999744222101 122335567788888888876 8888774
|
| >3d0c_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI-2, structural genomics; 1.90A {Oceanobacillus iheyensis HTE831} | Back alignment and structure |
|---|
Probab=85.42 E-value=21 Score=32.27 Aligned_cols=134 Identities=14% Similarity=0.094 Sum_probs=81.8
Q ss_pred CCCcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEec
Q 020423 123 EQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCR 202 (326)
Q Consensus 123 ~~~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r 202 (326)
...|+++...+ +.++-.+.++.++++|+|++-+- .|..+ . ...+-+.+-.++|.++++.|+.+=-+
T Consensus 80 grvpViaGvg~-st~~ai~la~~A~~~Gadavlv~--~P~y~-~----------~s~~~l~~~f~~va~a~~lPiilYn~ 145 (314)
T 3d0c_A 80 GRATVVAGIGY-SVDTAIELGKSAIDSGADCVMIH--QPVHP-Y----------ITDAGAVEYYRNIIEALDAPSIIYFK 145 (314)
T ss_dssp TSSEEEEEECS-SHHHHHHHHHHHHHTTCSEEEEC--CCCCS-C----------CCHHHHHHHHHHHHHHSSSCEEEEEC
T ss_pred CCCeEEecCCc-CHHHHHHHHHHHHHcCCCEEEEC--CCCCC-C----------CCHHHHHHHHHHHHHhCCCCEEEEeC
Confidence 45789999988 99999999999999999999885 34421 1 12456777778888888999887555
Q ss_pred cCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCC---CceEEEeCCCCCH
Q 020423 203 IGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFP---DLTFTLNGGINTV 279 (326)
Q Consensus 203 ~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~---~iPVIa~GgI~s~ 279 (326)
.|. - +.+. +.++.+.-.+..|--+.+ +...+.++++... ++. +.+|. -
T Consensus 146 tg~-l--~~~~----~~~La~~pnIvgiKdssg------------------d~~~~~~~~~~~~~~~~f~-v~~G~---d 196 (314)
T 3d0c_A 146 DAH-L--SDDV----IKELAPLDKLVGIKYAIN------------------DIQRVTQVMRAVPKSSNVA-FICGT---A 196 (314)
T ss_dssp CTT-S--CTHH----HHHHTTCTTEEEEEECCC------------------CHHHHHHHHHHSCGGGCCE-EEETT---H
T ss_pred CCC-c--CHHH----HHHHHcCCCEEEEEeCCC------------------CHHHHHHHHHhcCCCCCEE-EEEeC---c
Confidence 554 2 2222 223332223434332221 2444445554432 333 45553 2
Q ss_pred H-HHHHHHHhCCChhhhhHHH
Q 020423 280 D-EVNAALRKGAHHVMVGRAA 299 (326)
Q Consensus 280 ~-da~~~l~~GaD~V~iGRal 299 (326)
+ .+...+..|++++..+.+-
T Consensus 197 ~~~~~~~l~~G~~G~is~~an 217 (314)
T 3d0c_A 197 EKWAPFFYHAGAVGFTSGLVN 217 (314)
T ss_dssp HHHHHHHHHHTCCEEEESGGG
T ss_pred HHHHHHHHHcCCCEEEecHHH
Confidence 3 4566677888887776543
|
| >2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661} | Back alignment and structure |
|---|
Probab=85.41 E-value=0.86 Score=41.07 Aligned_cols=86 Identities=12% Similarity=0.072 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcC-CCceEEEe-CCCCCHHHHHHH---
Q 020423 211 YNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF-PDLTFTLN-GGINTVDEVNAA--- 285 (326)
Q Consensus 211 ~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~-~~iPVIa~-GgI~s~~da~~~--- 285 (326)
.+.+.+.+ +.+.+.|+|.|.+-|.++....++. ....+.+...++.. .++|||+. |+..+.+.++.+
T Consensus 20 ~~~l~~lv-~~li~~Gv~gl~~~GttGE~~~Ls~-------~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~a 91 (289)
T 2yxg_A 20 FDGLEENI-NFLIENGVSGIVAVGTTGESPTLSH-------EEHKKVIEKVVDVVNGRVQVIAGAGSNCTEEAIELSVFA 91 (289)
T ss_dssp HHHHHHHH-HHHHHTTCSEEEESSTTTTGGGSCH-------HHHHHHHHHHHHHHTTSSEEEEECCCSSHHHHHHHHHHH
T ss_pred HHHHHHHH-HHHHHCCCCEEEECccccChhhCCH-------HHHHHHHHHHHHHhCCCCcEEEeCCCCCHHHHHHHHHHH
Confidence 44444433 3445689999999876542111111 01123333333332 26898765 554444443322
Q ss_pred HHhCCChhhhhHHHHhCCc
Q 020423 286 LRKGAHHVMVGRAAYQNPW 304 (326)
Q Consensus 286 l~~GaD~V~iGRall~dP~ 304 (326)
-+.|||+|++-.+.+..|.
T Consensus 92 ~~~Gadavlv~~P~y~~~s 110 (289)
T 2yxg_A 92 EDVGADAVLSITPYYNKPT 110 (289)
T ss_dssp HHHTCSEEEEECCCSSCCC
T ss_pred HhcCCCEEEECCCCCCCCC
Confidence 2379999999988876654
|
| >2e6f_A Dihydroorotate dehydrogenase; chagas disease, pyrimidine biosynthesis, fumarate reductase, energy metabolism, redox homeostasis, flavoprotein; HET: FMN OXC; 1.26A {Trypanosoma cruzi} PDB: 2e6a_A* 2e6d_A* 2e68_A* 2djl_A* 2djx_A* 3c3n_A* 2b4g_A* 3c61_A* 3mhu_A* 3mjy_A* | Back alignment and structure |
|---|
Probab=85.35 E-value=4.2 Score=36.62 Aligned_cols=93 Identities=8% Similarity=-0.013 Sum_probs=50.5
Q ss_pred CCCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCcc---EEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCce
Q 020423 193 TNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTR---HFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLT 269 (326)
Q Consensus 193 ~~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd---~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iP 269 (326)
.+.|+.+-+.. .+.++..+ .++.++++|+| +|.++-..+...+ +.....-+...++.+.++++.. ++|
T Consensus 92 ~~~p~~~~i~g-----~~~~~~~~-~a~~~~~~g~d~~~~iein~~~P~~~g--~~~~g~~~~~~~~ii~~vr~~~-~~P 162 (314)
T 2e6f_A 92 SKKPLFLSISG-----LSVEENVA-MVRRLAPVAQEKGVLLELNLSCPNVPG--KPQVAYDFEAMRTYLQQVSLAY-GLP 162 (314)
T ss_dssp TTCCEEEEECC-----SSHHHHHH-HHHHHHHHHHHHCCEEEEECCCCCSTT--CCCGGGSHHHHHHHHHHHHHHH-CSC
T ss_pred CCCcEEEEeCC-----CCHHHHHH-HHHHHHHhCCCcCceEEEEcCCCCCCC--chhhcCCHHHHHHHHHHHHHhc-CCC
Confidence 46888887653 23445554 34456678999 9999864332211 0000000011134555655553 788
Q ss_pred EEE--eCCCCCHHHH----HHHHHhC-CChhhh
Q 020423 270 FTL--NGGINTVDEV----NAALRKG-AHHVMV 295 (326)
Q Consensus 270 VIa--~GgI~s~~da----~~~l~~G-aD~V~i 295 (326)
|+. ..++ +.+++ ..+.+.| +|+|.+
T Consensus 163 v~vK~~~~~-~~~~~~~~a~~~~~aG~~d~i~v 194 (314)
T 2e6f_A 163 FGVKMPPYF-DIAHFDTAAAVLNEFPLVKFVTC 194 (314)
T ss_dssp EEEEECCCC-CHHHHHHHHHHHHTCTTEEEEEE
T ss_pred EEEEECCCC-CHHHHHHHHHHHHhcCCceEEEE
Confidence 875 3444 66663 3444589 998854
|
| >2vef_A Dihydropteroate synthase; antibiotic resistance, transferase, folate biosynthesis; 1.8A {Streptococcus pneumoniae} PDB: 2veg_A* | Back alignment and structure |
|---|
Probab=85.17 E-value=3.1 Score=37.96 Aligned_cols=61 Identities=15% Similarity=0.167 Sum_probs=41.3
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEE
Q 020423 135 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVK 200 (326)
Q Consensus 135 ~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK 200 (326)
+.+...+.|+...+.|+|.|||++-+-.+ +.=.-+.+...+.+..+++++++..+.|++|-
T Consensus 31 ~~~~a~~~a~~~v~~GAdIIDIGgeSTrP-----Ga~~v~~~eE~~Rv~pvI~~l~~~~~vpiSID 91 (314)
T 2vef_A 31 ALEQALQQARKLIAEGASMLDIGGESTRP-----GSSYVEIEEEIQRVVPVIKAIRKESDVLISID 91 (314)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEEECCC----------CHHHHHHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCcCCC-----CCCCCCHHHHHHHHHHHHHHHHhhCCceEEEe
Confidence 45666677788888999999998744221 11012233456778888888988888898885
|
| >3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MC protein structure initiative, midwest center for structural genomics; 1.20A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=84.99 E-value=0.91 Score=41.04 Aligned_cols=87 Identities=5% Similarity=-0.002 Sum_probs=48.7
Q ss_pred cHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcC-CCceEEE-eCCCCCHHHHHHHH-
Q 020423 210 SYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF-PDLTFTL-NGGINTVDEVNAAL- 286 (326)
Q Consensus 210 ~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~-~~iPVIa-~GgI~s~~da~~~l- 286 (326)
+.+.+.+.+ +.+.+.|+|.|.+-|.++....++. ....+.+...++.. .++|||+ +|+..+.+.++.+.
T Consensus 22 D~~~l~~lv-~~li~~Gv~gl~~~GttGE~~~Ls~-------~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~ 93 (294)
T 3b4u_A 22 DIDAMIAHA-RRCLSNGCDSVTLFGTTGEGCSVGS-------RERQAILSSFIAAGIAPSRIVTGVLVDSIEDAADQSAE 93 (294)
T ss_dssp CHHHHHHHH-HHHHHTTCSEEEESSTTTTGGGSCH-------HHHHHHHHHHHHTTCCGGGEEEEECCSSHHHHHHHHHH
T ss_pred CHHHHHHHH-HHHHHcCCCEEEECccccChhhCCH-------HHHHHHHHHHHHHhCCCCcEEEeCCCccHHHHHHHHHH
Confidence 444444433 3445689999999876642111111 11123444444443 2589875 45554444433322
Q ss_pred --HhCCChhhhhHHHHhC-Cc
Q 020423 287 --RKGAHHVMVGRAAYQN-PW 304 (326)
Q Consensus 287 --~~GaD~V~iGRall~d-P~ 304 (326)
+.|||+|++..+.+.. |.
T Consensus 94 A~~~Gadavlv~~P~y~~~~s 114 (294)
T 3b4u_A 94 ALNAGARNILLAPPSYFKNVS 114 (294)
T ss_dssp HHHTTCSEEEECCCCSSCSCC
T ss_pred HHhcCCCEEEEcCCcCCCCCC
Confidence 3799999999887766 53
|
| >2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=84.99 E-value=0.93 Score=40.96 Aligned_cols=86 Identities=14% Similarity=0.136 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcC-CCceEEEe-CCCCCHHHHHHH---
Q 020423 211 YNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF-PDLTFTLN-GGINTVDEVNAA--- 285 (326)
Q Consensus 211 ~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~-~~iPVIa~-GgI~s~~da~~~--- 285 (326)
.+.+.+. .+.+.+.|+|.|.+-|.++....++. ....+.+...++.. .++|||+. |+..+.+.++.+
T Consensus 20 ~~~l~~l-v~~li~~Gv~gl~~~GttGE~~~Ls~-------~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~A 91 (294)
T 2ehh_A 20 YEALGNL-IEFHVDNGTDAILVCGTTGESPTLTF-------EEHEKVIEFAVKRAAGRIKVIAGTGGNATHEAVHLTAHA 91 (294)
T ss_dssp HHHHHHH-HHHHHTTTCCEEEESSTTTTGGGSCH-------HHHHHHHHHHHHHHTTSSEEEEECCCSCHHHHHHHHHHH
T ss_pred HHHHHHH-HHHHHHCCCCEEEECccccChhhCCH-------HHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHH
Confidence 4444443 33445689999999876542111111 01123333333332 26898765 554444443322
Q ss_pred HHhCCChhhhhHHHHhCCc
Q 020423 286 LRKGAHHVMVGRAAYQNPW 304 (326)
Q Consensus 286 l~~GaD~V~iGRall~dP~ 304 (326)
.+.|||+|++-.+.+..|.
T Consensus 92 ~~~Gadavlv~~P~y~~~s 110 (294)
T 2ehh_A 92 KEVGADGALVVVPYYNKPT 110 (294)
T ss_dssp HHTTCSEEEEECCCSSCCC
T ss_pred HhcCCCEEEECCCCCCCCC
Confidence 2379999999988876664
|
| >3qn3_A Enolase; structural genomics, center for structural genomics of infec diseases, csgid, glycolysis, lyase; 2.13A {Campylobacter jejuni} | Back alignment and structure |
|---|
Probab=84.86 E-value=4.8 Score=38.20 Aligned_cols=70 Identities=14% Similarity=0.161 Sum_probs=47.6
Q ss_pred cHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCC-CceEEEeCCCCC-HHHHHHHHH
Q 020423 210 SYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFP-DLTFTLNGGINT-VDEVNAALR 287 (326)
Q Consensus 210 ~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~-~iPVIa~GgI~s-~~da~~~l~ 287 (326)
+.++.++++.+++++.++.+|. + ..++-+|+.++++.++.. ++||++-=-+.+ ++++.++++
T Consensus 262 t~~eai~~~~~ll~~y~i~~IE----d------------Pl~~dD~e~~~~L~~~~g~~ipI~gDE~~~tn~~~~~~~i~ 325 (417)
T 3qn3_A 262 SSEALIERYVELCAKYPICSIE----D------------GLAENDFEGWIKLTEKLGNKIQLVGDDLFVTNEDILREGII 325 (417)
T ss_dssp CHHHHHHHHHHHHHHSCEEEEE----S------------SSCTTCHHHHHHHHHHHTTTSEEEESTTTTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhcceeEEe----c------------CCCcccHHHHHHHHHhhCCCCceecCCcccCCHHHHHHHHH
Confidence 4667777777767888877763 1 112345777777776643 589765555666 999999998
Q ss_pred hC-CChhhh
Q 020423 288 KG-AHHVMV 295 (326)
Q Consensus 288 ~G-aD~V~i 295 (326)
.+ +|.|++
T Consensus 326 ~~a~d~i~i 334 (417)
T 3qn3_A 326 KKMANAVLI 334 (417)
T ss_dssp HTCCSEEEE
T ss_pred hCCCCEEEe
Confidence 65 777654
|
| >2wqp_A Polysialic acid capsule biosynthesis protein SIAC; NEUB, inhibitor, TIM barrel, sialic acid synthase, transfera; HET: WQP; 1.75A {Neisseria meningitidis} PDB: 2zdr_A 1xuz_A* 1xuu_A 3cm4_A | Back alignment and structure |
|---|
Probab=84.75 E-value=5.1 Score=37.10 Aligned_cols=137 Identities=12% Similarity=0.114 Sum_probs=81.8
Q ss_pred EEEEecC---CCHHHHHHHHHHHHHCCCCEEEecCCCCCCc-------ccCCCCccccc-------cCCHHHHHHHHHHH
Q 020423 127 IVLQIGG---SNLDNLAKATELANAYNYDEINLNCGCPSPK-------VAGHGCFGVSL-------MLDPKFVGEAMSVI 189 (326)
Q Consensus 127 iivQL~g---~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~-------~~r~d~yGgsl-------~~r~~~l~eiv~av 189 (326)
+|.-+.. .+.+...+.++.++++|+|.|-...-.|... .+..+. |.++ +-..+.+ +.+...
T Consensus 22 iIAe~g~NH~gs~e~a~~li~~ak~aGadavKfq~~k~~tl~s~~~~~fq~~~~-~~~~y~~~~~~~l~~e~~-~~L~~~ 99 (349)
T 2wqp_A 22 IICEIGINHEGSLKTAFEMVDAAYNAGAEVVKHQTHIVEDEMSDEAKQVIPGNA-DVSIYEIMERCALNEEDE-IKLKEY 99 (349)
T ss_dssp EEEEEETTTTTCHHHHHHHHHHHHHHTCSEEEEEECCHHHHCCGGGGGCCCTTC-SSCHHHHHHHHCCCHHHH-HHHHHH
T ss_pred EEEecCCcccCCHHHHHHHHHHHHHhCCCEEeeeecccccccCcchhccccCCC-CccHHHHHHHhCCCHHHH-HHHHHH
Confidence 4555542 2577788888999999999999875433210 011111 2122 1223333 344444
Q ss_pred HhcCCCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCce
Q 020423 190 AANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLT 269 (326)
Q Consensus 190 r~~~~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iP 269 (326)
++..|+++..- + + + .+ .++ .+++.|+|.+-|..++- .++.+++++.+ .+.|
T Consensus 100 ~~~~Gi~~~st--~-~-d---~~-svd----~l~~~~v~~~KI~S~~~---------------~n~~LL~~va~--~gkP 150 (349)
T 2wqp_A 100 VESKGMIFIST--L-F-S---RA-AAL----RLQRMDIPAYKIGSGEC---------------NNYPLIKLVAS--FGKP 150 (349)
T ss_dssp HHHTTCEEEEE--E-C-S---HH-HHH----HHHHHTCSCEEECGGGT---------------TCHHHHHHHHT--TCSC
T ss_pred HHHhCCeEEEe--e-C-C---HH-HHH----HHHhcCCCEEEECcccc---------------cCHHHHHHHHh--cCCe
Confidence 55668877542 1 1 1 11 122 34557899999977642 23778877765 3899
Q ss_pred EEEeCCCCCHHHHHHHHH----hCCChhh
Q 020423 270 FTLNGGINTVDEVNAALR----KGAHHVM 294 (326)
Q Consensus 270 VIa~GgI~s~~da~~~l~----~GaD~V~ 294 (326)
||.+=|..|.+++..+++ .|.+.+.
T Consensus 151 viLstGmat~~Ei~~Ave~i~~~G~~iiL 179 (349)
T 2wqp_A 151 IILSTGMNSIESIKKSVEIIREAGVPYAL 179 (349)
T ss_dssp EEEECTTCCHHHHHHHHHHHHHHTCCEEE
T ss_pred EEEECCCCCHHHHHHHHHHHHHcCCCEEE
Confidence 999999999999887776 4554443
|
| >1f8m_A Isocitrate lyase, ICL; alpha-beta barrel, helix-swapping, closed conformation, bromopyuvate modification, structural genomics; 1.80A {Mycobacterium tuberculosis H37RV} SCOP: c.1.12.7 PDB: 1f61_A 1f8i_A | Back alignment and structure |
|---|
Probab=84.67 E-value=12 Score=35.54 Aligned_cols=108 Identities=12% Similarity=0.063 Sum_probs=63.9
Q ss_pred CCcEEEEec-C-CCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhc---CCCcEE
Q 020423 124 QHPIVLQIG-G-SNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAAN---TNVPVS 198 (326)
Q Consensus 124 ~~piivQL~-g-~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~---~~~pv~ 198 (326)
..|+++-+= | .++....+.++.+.++|+.||.|-=..+. .+|.++.||.-+-..+...+-|+++|.+ .+.++.
T Consensus 148 ~~PIiaD~DtGfG~~~nv~~tvk~~i~AGaaGi~IEDq~~~--~KkCGH~~gk~lvp~~e~v~rI~AAr~A~~~~g~d~v 225 (429)
T 1f8m_A 148 LAPIVADGEAGFGGALNVYELQKALIAAGVAGSHWEDQLAS--EKKCGHLGGKVLIPTQQHIRTLTSARLAADVADVPTV 225 (429)
T ss_dssp SCCEEEECTTTTSSHHHHHHHHHHHHHTTCSEEEEECBCGG--GCCCTTSSCCEECCHHHHHHHHHHHHHHHHHTTCCCE
T ss_pred CCCEEEECCCCCCCcHHHHHHHHHHHHcCCEEEEEecCCCc--cccccCCCCCeeeCHHHHHHHHHHHHHHHHhcCCCEE
Confidence 378998873 2 24457889999999999999999633211 1345666765444444444444444443 355655
Q ss_pred EEeccCCCC----------------------------CccHHHHHHHHHHHhhhCCccEEEEecC
Q 020423 199 VKCRIGVDD----------------------------HDSYNQLCDFIYKVSSLSPTRHFIIHSR 235 (326)
Q Consensus 199 vK~r~g~~~----------------------------~~~~~e~~~~ia~~le~~Gvd~I~v~~~ 235 (326)
+=-|..... ...+++.++... .+.+ |+|.|-++++
T Consensus 226 IiARTDa~~a~li~s~~d~~d~~fl~g~~~~eg~y~~~~gld~AI~Ra~-AYa~-gAD~if~e~~ 288 (429)
T 1f8m_A 226 VIARTDAEAATLITSDVDERDQPFITGERTREGFYRTKNGIEPCIARAK-AYAP-FADLIWMETG 288 (429)
T ss_dssp EEEEECTTTCCEESCCCSTTTGGGEEEEECTTSCEEECCSHHHHHHHHH-HHGG-GCSEEEECCS
T ss_pred EEEEechhhhccccccccccccccccCCCCcccccccccCHHHHHHHHH-HHHh-cCCEEEeCCC
Confidence 544443211 124566665443 3445 8999988753
|
| >2nli_A Lactate oxidase; flavoenzyme, FMN, D-lactate, oxidoreducta; HET: FMN; 1.59A {Aerococcus viridans} PDB: 2zfa_A* 2du2_A* 2e77_A* 2j6x_A* | Back alignment and structure |
|---|
Probab=84.65 E-value=2.1 Score=39.92 Aligned_cols=42 Identities=17% Similarity=0.287 Sum_probs=35.2
Q ss_pred CccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhh
Q 020423 252 PLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMV 295 (326)
Q Consensus 252 ~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~i 295 (326)
...|+.+..+++.. ++||+.-| +.+++++..+.+.|+|+|.+
T Consensus 215 ~~~~~~i~~lr~~~-~~PvivK~-v~~~e~a~~a~~~Gad~I~v 256 (368)
T 2nli_A 215 KISPRDIEEIAGHS-GLPVFVKG-IQHPEDADMAIKRGASGIWV 256 (368)
T ss_dssp BCCHHHHHHHHHHS-SSCEEEEE-ECSHHHHHHHHHTTCSEEEE
T ss_pred hhhHHHHHHHHHHc-CCCEEEEc-CCCHHHHHHHHHcCCCEEEE
Confidence 34588888887765 89998875 68999999999999999988
|
| >1kbi_A Cytochrome B2, L-LCR; flavocytochrome B2, electron transfer, oxidoreductase; HET: HEM FMN; 2.30A {Saccharomyces cerevisiae} SCOP: c.1.4.1 d.120.1.1 PDB: 1fcb_A* 1lco_A* 1ldc_A* 1sze_A* 2oz0_A* 1szf_A* 1szg_A* 1ltd_A* 1kbj_A* 1qcw_A* 3ks0_A* | Back alignment and structure |
|---|
Probab=84.60 E-value=3.9 Score=39.90 Aligned_cols=41 Identities=20% Similarity=0.347 Sum_probs=34.3
Q ss_pred ccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhh
Q 020423 253 LKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMV 295 (326)
Q Consensus 253 ~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~i 295 (326)
..|+.+..+++.. ++||+.- |+.+++++..+.+.|+|+|.+
T Consensus 330 ~~~~~i~~lr~~~-~~PvivK-gv~~~e~A~~a~~aGad~I~v 370 (511)
T 1kbi_A 330 LTWKDIEELKKKT-KLPIVIK-GVQRTEDVIKAAEIGVSGVVL 370 (511)
T ss_dssp CCHHHHHHHHHHC-SSCEEEE-EECSHHHHHHHHHTTCSEEEE
T ss_pred hHHHHHHHHHHHh-CCcEEEE-eCCCHHHHHHHHHcCCCEEEE
Confidence 4588888887765 8999877 466899999999999999988
|
| >1ep3_A Dihydroorotate dehydrogenase B (PYRD subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ep2_A* 1ep1_A* | Back alignment and structure |
|---|
Probab=84.37 E-value=3.7 Score=36.78 Aligned_cols=106 Identities=8% Similarity=0.059 Sum_probs=59.7
Q ss_pred HHHHHHHHHHh-cCCCcEEEEeccCCCCCccHHHHHHHHHHHhhh-CCccEEEEecCCccc-CCCCcCCcCCCCCccHHH
Q 020423 181 FVGEAMSVIAA-NTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSL-SPTRHFIIHSRKALL-NGISPAENRTIPPLKYEY 257 (326)
Q Consensus 181 ~l~eiv~avr~-~~~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~-~Gvd~I~v~~~~~~~-~g~~~~~~~~~~~~~~~~ 257 (326)
++.++++.+++ ..+.|+.+-+..+ +.++..+ .++.+++ +|+|+|.+|-..+.. .+ +......+....+.
T Consensus 84 ~~~~~~~~~~~~~~~~p~~v~l~~~-----~~~~~~~-~a~~~~~~~g~d~iei~~~~p~~~~g--~~~~g~~~~~~~ei 155 (311)
T 1ep3_A 84 IMTEKLPWLNENFPELPIIANVAGS-----EEADYVA-VCAKIGDAANVKAIELNISCPNVKHG--GQAFGTDPEVAAAL 155 (311)
T ss_dssp HHHTHHHHHHHHCTTSCEEEEECCS-----SHHHHHH-HHHHHTTSTTEEEEEEECCSEEGGGT--TEEGGGCHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCcEEEEEcCC-----CHHHHHH-HHHHHhccCCCCEEEEeCCCCCCCCc--hhhhcCCHHHHHHH
Confidence 33445666766 3378888876543 2344444 4456666 899999998542211 00 00000000111445
Q ss_pred HHHHHhcCCCceEEE--eCCCCCHHH-HHHHHHhCCChhhh
Q 020423 258 YYALLRDFPDLTFTL--NGGINTVDE-VNAALRKGAHHVMV 295 (326)
Q Consensus 258 i~~i~~~~~~iPVIa--~GgI~s~~d-a~~~l~~GaD~V~i 295 (326)
+.++++.. ++||+. ..++.+..+ +..+.+.|+|+|.+
T Consensus 156 i~~v~~~~-~~pv~vk~~~~~~~~~~~a~~l~~~G~d~i~v 195 (311)
T 1ep3_A 156 VKACKAVS-KVPLYVKLSPNVTDIVPIAKAVEAAGADGLTM 195 (311)
T ss_dssp HHHHHHHC-SSCEEEEECSCSSCSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHhc-CCCEEEEECCChHHHHHHHHHHHHcCCCEEEE
Confidence 56665554 788875 235666555 56666799999988
|
| >2zbt_A Pyridoxal biosynthesis lyase PDXS; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.65A {Thermus thermophilus} PDB: 2iss_A* | Back alignment and structure |
|---|
Probab=84.36 E-value=1.7 Score=39.12 Aligned_cols=67 Identities=7% Similarity=0.027 Sum_probs=45.8
Q ss_pred HHHhhhCCccEEEEecCCc----ccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChh
Q 020423 219 YKVSSLSPTRHFIIHSRKA----LLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHV 293 (326)
Q Consensus 219 a~~le~~Gvd~I~v~~~~~----~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V 293 (326)
++.++++|++.|++-.... ..+|.. .....+.+.++++.. ++|++...++.+.++++.+++.|||+|
T Consensus 34 a~~~~~~Ga~~i~~~e~v~~~~~~~~G~~-------~~~~~~~i~~i~~~~-~~Pvi~~~~~~~~~~~~~~~~aGad~v 104 (297)
T 2zbt_A 34 AVIAEEAGAVAVMALERVPADIRAQGGVA-------RMSDPKIIKEIMAAV-SIPVMAKVRIGHFVEAMILEAIGVDFI 104 (297)
T ss_dssp HHHHHHHTCSEEEECSSCHHHHHHTTCCC-------CCCCHHHHHHHHTTC-SSCEEEEEETTCHHHHHHHHHTTCSEE
T ss_pred HHHHHHCCCcEEEeccccchHHHhhcCCc-------cCCCHHHHHHHHHhc-CCCeEEEeccCCHHHHHHHHHCCCCEE
Confidence 4455678999998732110 011211 111356777777664 899999888888999999999999999
|
| >1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, J protein structure initiative, joint center for structural G lyase; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 3pb2_A 3pb0_A | Back alignment and structure |
|---|
Probab=84.16 E-value=0.83 Score=41.57 Aligned_cols=86 Identities=12% Similarity=0.104 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcC-CCceEEEe-CCCCCHHHHHHH---
Q 020423 211 YNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF-PDLTFTLN-GGINTVDEVNAA--- 285 (326)
Q Consensus 211 ~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~-~~iPVIa~-GgI~s~~da~~~--- 285 (326)
.+.+.+. .+.+.+.|+|.|.+-|.++....++. ....+.+...++.. .++|||+. |+..+.+.++.+
T Consensus 32 ~~~l~~l-v~~li~~Gv~gl~v~GtTGE~~~Ls~-------eEr~~vi~~~~~~~~grvpViaGvg~~st~~ai~la~~A 103 (306)
T 1o5k_A 32 LESYERL-VRYQLENGVNALIVLGTTGESPTVNE-------DEREKLVSRTLEIVDGKIPVIVGAGTNSTEKTLKLVKQA 103 (306)
T ss_dssp HHHHHHH-HHHHHHTTCCEEEESSGGGTGGGCCH-------HHHHHHHHHHHHHHTTSSCEEEECCCSCHHHHHHHHHHH
T ss_pred HHHHHHH-HHHHHHcCCCEEEeCccccchhhCCH-------HHHHHHHHHHHHHhCCCCeEEEcCCCccHHHHHHHHHHH
Confidence 4444443 33445689999999876542111111 01123333333332 36898755 554444443332
Q ss_pred HHhCCChhhhhHHHHhCCc
Q 020423 286 LRKGAHHVMVGRAAYQNPW 304 (326)
Q Consensus 286 l~~GaD~V~iGRall~dP~ 304 (326)
.+.|||+|++-.+.+..|.
T Consensus 104 ~~~Gadavlv~~P~y~~~s 122 (306)
T 1o5k_A 104 EKLGANGVLVVTPYYNKPT 122 (306)
T ss_dssp HHHTCSEEEEECCCSSCCC
T ss_pred HhcCCCEEEECCCCCCCCC
Confidence 2379999999988876664
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 326 | ||||
| d1vhna_ | 305 | c.1.4.1 (A:) Putative flavin oxidoreducatase TM009 | 1e-24 | |
| d1ep3a_ | 311 | c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactoco | 7e-19 | |
| d1gtea2 | 312 | c.1.4.1 (A:533-844) Dihydropyrimidine dehydrogenas | 7e-10 | |
| d1ps9a1 | 330 | c.1.4.1 (A:1-330) 2,4-dienoyl-CoA reductase, N-ter | 2e-05 | |
| d1djqa1 | 340 | c.1.4.1 (A:1-340) Trimethylamine dehydrogenase, N- | 6e-04 | |
| d1yxya1 | 230 | c.1.2.5 (A:4-233) Putative N-acetylmannosamine-6-p | 0.003 | |
| d1y0ea_ | 222 | c.1.2.5 (A:) Putative N-acetylmannosamine-6-phosph | 0.003 |
| >d1vhna_ c.1.4.1 (A:) Putative flavin oxidoreducatase TM0096 {Thermotoga maritima [TaxId: 2336]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Putative flavin oxidoreducatase TM0096 species: Thermotoga maritima [TaxId: 2336]
Score = 99.3 bits (246), Expect = 1e-24
Identities = 54/235 (22%), Positives = 97/235 (41%), Gaps = 21/235 (8%)
Query: 71 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 130
+APM +TD+ +RTLA + ++EM++A+ + + L P + + +Q
Sbjct: 3 VGLAPMAGYTDSAFRTLAFEWGAD-FAFSEMVSAKGFLMNSQKTEELL-PQPHERNVAVQ 60
Query: 131 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 190
I GS + L++A + + Y I+LN GCP KV G G L D + + +
Sbjct: 61 IFGSEPNELSEAARILS-EKYKWIDLNAGCPVRKVVKEGAGGALLK-DLRHFRYIVRELR 118
Query: 191 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 250
+ + SVK R+G + ++ + IH+R + +
Sbjct: 119 KSVSGKFSVKTRLGWEKNEVEEIYRILVE-----EGVDEVFIHTRTVVQS---------- 163
Query: 251 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRK-GAHHVMVGRAAYQNPW 304
+ AL + ++G I T ++ AL + G ++V R A PW
Sbjct: 164 -FTGRAEWKALSVLEKRIPTFVSGDIFTPEDAKRALEESGCDGLLVARGAIGRPW 217
|
| >d1ep3a_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus lactis, isozyme B [TaxId: 1358]} Length = 311 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Lactococcus lactis, isozyme B [TaxId: 1358]
Score = 83.1 bits (204), Expect = 7e-19
Identities = 43/217 (19%), Positives = 75/217 (34%), Gaps = 12/217 (5%)
Query: 94 HAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSNLDNLAKATE-LANAYNYD 152
L L + +L + + PI+ + GS + + +A N
Sbjct: 68 SGMLNAIGLQNPGLEVIMTEKLPWLNENFPELPIIANVAGSEEADYVAVCAKIGDAANVK 127
Query: 153 EINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYN 212
I LN CP+ K G DP+ + A + VP+ VK V D
Sbjct: 128 AIELNISCPNVKHGGQAF-----GTDPEVAAALVKACKAVSKVPLYVKLSPNVTDIVPIA 182
Query: 213 QLC-----DFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPD 267
+ D + +++L R + + L N I P+ + + + +D
Sbjct: 183 KAVEAAGADGLTMINTLMGVRFDLKTRQPILANITGGLSGPAIKPVALKLIHQVAQDVD- 241
Query: 268 LTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW 304
+ GG+ +V GA V VG A + +P+
Sbjct: 242 IPIIGMGGVANAQDVLEMYMAGASAVAVGTANFADPF 278
|
| >d1gtea2 c.1.4.1 (A:533-844) Dihydropyrimidine dehydrogenase, domain 4 {Pig (Sus scrofa) [TaxId: 9823]} Length = 312 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydropyrimidine dehydrogenase, domain 4 species: Pig (Sus scrofa) [TaxId: 9823]
Score = 56.9 bits (136), Expect = 7e-10
Identities = 37/221 (16%), Positives = 66/221 (29%), Gaps = 14/221 (6%)
Query: 96 WLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSNLDNLAKATELANAYNYDEIN 155
+L E+++ +T Y ++ A P+ I + N ++ + + A A D +
Sbjct: 75 FLNIELISEKTAAYWCQSVTELKADFPDNIVIASIMCSYNKNDWMELSRKAEASGADALE 134
Query: 156 LNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLC 215
LN CP + DP+ V + +P K V D S +
Sbjct: 135 LNLSCPHGMGERGMGL--ACGQDPELVRNICRWVRQAVQIPFFAKLTPNVTDIVSIARAA 192
Query: 216 -----------DFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRD 264
+ + + L I P+ + R
Sbjct: 193 KEGGADGVTATNTVSGLMGLKADGTPWPAVGAGKRTTYGGVSGTAIRPIALRAVTTIARA 252
Query: 265 FPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAA-YQNPW 304
P GGI++ + L GA + V A Q+
Sbjct: 253 LPGFPILATGGIDSAESGLQFLHSGASVLQVCSAVQNQDFT 293
|
| >d1ps9a1 c.1.4.1 (A:1-330) 2,4-dienoyl-CoA reductase, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 330 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: 2,4-dienoyl-CoA reductase, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 43.4 bits (101), Expect = 2e-05
Identities = 18/136 (13%), Positives = 39/136 (28%), Gaps = 2/136 (1%)
Query: 170 CFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDS-YNQLCDFIYKVSSLSPTR 228
+G +F E + + + R+ + D + + ++
Sbjct: 182 QWGGDYRNRMRFAVEVVRAVRERVGNDFIIIYRLSMLDLVEDGGTFAETVELAQAIEAAG 241
Query: 229 HFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRK 288
II++ P +P + + L+ L IN + L +
Sbjct: 242 ATIINTGIGWHEARIPTIATPVPRGAFSWVTRKLKGHVSLPLVTTNRINDPQVADDILSR 301
Query: 289 G-AHHVMVGRAAYQNP 303
G A V + R +
Sbjct: 302 GDADMVSMARPFLADA 317
|
| >d1djqa1 c.1.4.1 (A:1-340) Trimethylamine dehydrogenase, N-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} Length = 340 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Trimethylamine dehydrogenase, N-terminal domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Score = 38.8 bits (89), Expect = 6e-04
Identities = 20/152 (13%), Positives = 41/152 (26%), Gaps = 5/152 (3%)
Query: 157 NCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 216
+G SL +F E + + ++ R GVD Q+
Sbjct: 177 LQFLNPYYNKRTDKYGGSLENRARFWLETLEKVKHAVGSDCAIATRFGVDTVYGPGQIEA 236
Query: 217 FIYKVSSLSPTRHFI----IHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTL 272
+ + + I G +R + L++
Sbjct: 237 EVDGQKFVEMADSLVDMWDITIGDIAEWGEDAGPSRFYQQGHTIPWVKLVKQVSKKPVLG 296
Query: 273 NGGINTVDEVNAALRKG-AHHVMVGRAAYQNP 303
G +++ + KG A + R + +P
Sbjct: 297 VGRYTDPEKMIEIVTKGYADIIGCARPSIADP 328
|
| >d1yxya1 c.1.2.5 (A:4-233) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Streptococcus pyogenes [TaxId: 1314]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: NanE-like domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE species: Streptococcus pyogenes [TaxId: 1314]
Score = 36.0 bits (82), Expect = 0.003
Identities = 23/208 (11%), Positives = 48/208 (23%), Gaps = 11/208 (5%)
Query: 100 EMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCG 159
E L I+ Q E I+ + + + A + + EI
Sbjct: 9 EQLKGGIIVSCQALPGE--PLYSETGGIMPLMAKAAQEAGAVGIRANSVRDIKEIQAITD 66
Query: 160 CPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIY 219
P + + + + R D D + +
Sbjct: 67 LPIIGIIKKDYPPQEPFITATMTEVDQLAALNIAVIAMDCTKRDRHDGLDIASFIRQVKE 126
Query: 220 K---------VSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTF 270
K +S+ + +S + + +
Sbjct: 127 KYPNQLLMADISTFDEGLVAHQAGIDFVGTTLSGYTPYSRQEAGPDVALIEALCKAGIAV 186
Query: 271 TLNGGINTVDEVNAALRKGAHHVMVGRA 298
G I++ +E G ++VG A
Sbjct: 187 IAEGKIHSPEEAKKINDLGVAGIVVGGA 214
|
| >d1y0ea_ c.1.2.5 (A:) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Staphylococcus aureus [TaxId: 1280]} Length = 222 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: NanE-like domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE species: Staphylococcus aureus [TaxId: 1280]
Score = 36.0 bits (82), Expect = 0.003
Identities = 9/33 (27%), Positives = 12/33 (36%), Gaps = 1/33 (3%)
Query: 272 LNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW 304
G + T D + G H +VG A P
Sbjct: 180 AEGNVITPDMYKRVMDLGVHCSVVGG-AITRPK 211
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 326 | |||
| d1z41a1 | 337 | NADPH dehydrogenase NamA {Bacillus subtilis [TaxId | 100.0 | |
| d1ps9a1 | 330 | 2,4-dienoyl-CoA reductase, N-terminal domain {Esch | 100.0 | |
| d1vhna_ | 305 | Putative flavin oxidoreducatase TM0096 {Thermotoga | 100.0 | |
| d1djqa1 | 340 | Trimethylamine dehydrogenase, N-terminal domain {M | 100.0 | |
| d1vyra_ | 363 | Pentaerythritol tetranirate reductase {Enterobacte | 100.0 | |
| d1gwja_ | 374 | Morphinone reductase {Pseudomonas putida [TaxId: 3 | 100.0 | |
| d1oyaa_ | 399 | Old yellow enzyme (OYE) {Lager yeast (Saccharomyce | 100.0 | |
| d1icpa_ | 364 | 12-oxophytodienoate reductase (OPR, OYE homolog) { | 100.0 | |
| d1q45a_ | 380 | 12-oxophytodienoate reductase (OPR, OYE homolog) { | 100.0 | |
| d1ep3a_ | 311 | Dihydroorotate dehydrogenase {Lactococcus lactis, | 99.93 | |
| d1gtea2 | 312 | Dihydropyrimidine dehydrogenase, domain 4 {Pig (Su | 99.93 | |
| d1juba_ | 311 | Dihydroorotate dehydrogenase {Lactococcus lactis, | 99.86 | |
| d2b4ga1 | 312 | Dihydroorotate dehydrogenase {Trypanosoma brucei [ | 99.83 | |
| d1f76a_ | 336 | Dihydroorotate dehydrogenase {Escherichia coli [Ta | 99.78 | |
| d1d3ga_ | 367 | Dihydroorotate dehydrogenase {Human (Homo sapiens) | 99.78 | |
| d1tv5a1 | 409 | Dihydroorotate dehydrogenase {Plasmodium falciparu | 99.77 | |
| d1p0ka_ | 329 | Isopentenyl-diphosphate delta-isomerase {Bacillus | 99.5 | |
| d1vcfa1 | 310 | Isopentenyl-diphosphate delta-isomerase {Thermus t | 99.34 | |
| d1vrda1 | 330 | Inosine monophosphate dehydrogenase (IMPDH) {Therm | 99.32 | |
| d1jr1a1 | 378 | Inosine monophosphate dehydrogenase (IMPDH) {Chine | 99.29 | |
| d1tb3a1 | 349 | Hydroxyacid oxidase {Rat (Rattus norvegicus) [TaxI | 99.23 | |
| d1eepa_ | 388 | Inosine monophosphate dehydrogenase (IMPDH) {Lyme | 99.2 | |
| d1y0ea_ | 222 | Putative N-acetylmannosamine-6-phosphate 2-epimera | 99.12 | |
| d1zfja1 | 365 | Inosine monophosphate dehydrogenase (IMPDH) {Strep | 99.08 | |
| d1yxya1 | 230 | Putative N-acetylmannosamine-6-phosphate 2-epimera | 99.05 | |
| d1p4ca_ | 353 | Membrane-associated (S)-mandelate dehydrogenase {P | 99.02 | |
| d1goxa_ | 359 | Glycolate oxidase {Spinach (Spinacia oleracea) [Ta | 99.01 | |
| d1kbia1 | 414 | Flavocytochrome b2, C-terminal domain {Baker's yea | 98.97 | |
| d1pvna1 | 362 | Inosine monophosphate dehydrogenase (IMPDH) {Tritr | 98.95 | |
| d2cu0a1 | 368 | Inosine monophosphate dehydrogenase (IMPDH) {Pyroc | 98.76 | |
| d1wv2a_ | 243 | Thiazole biosynthesis protein ThiG {Pseudomonas ae | 98.68 | |
| d1xm3a_ | 251 | Thiazole biosynthesis protein ThiG {Bacillus subti | 98.59 | |
| d1ea0a2 | 771 | Alpha subunit of glutamate synthase, central and F | 98.58 | |
| d1znna1 | 254 | Pyridoxal biosynthesis lyase PdxS {Bacillus stearo | 98.28 | |
| d1ofda2 | 809 | Alpha subunit of glutamate synthase, central and F | 98.27 | |
| d1thfd_ | 253 | Cyclase subunit (or domain) of imidazoleglycerolph | 98.22 | |
| d1ka9f_ | 251 | Cyclase subunit (or domain) of imidazoleglycerolph | 98.22 | |
| d1h5ya_ | 252 | Cyclase subunit (or domain) of imidazoleglycerolph | 98.19 | |
| d1jvna1 | 323 | Cyclase subunit (or domain) of imidazoleglycerolph | 98.17 | |
| d1rd5a_ | 261 | Trp synthase alpha-subunit {Maize (Zea mays) [TaxI | 98.15 | |
| d1qopa_ | 267 | Trp synthase alpha-subunit {Salmonella typhimurium | 98.08 | |
| d1vzwa1 | 239 | Phosphoribosylformimino-5-aminoimidazole carboxami | 98.02 | |
| d1ub3a_ | 211 | Deoxyribose-phosphate aldolase DeoC {Thermus therm | 98.01 | |
| d1wa3a1 | 202 | KDPG aldolase {Thermotoga maritima [TaxId: 2336]} | 97.97 | |
| d1thfd_ | 253 | Cyclase subunit (or domain) of imidazoleglycerolph | 97.97 | |
| d1a53a_ | 247 | Indole-3-glycerophosphate synthase, IPGS {Archaeon | 97.92 | |
| d1h5ya_ | 252 | Cyclase subunit (or domain) of imidazoleglycerolph | 97.88 | |
| d1mzha_ | 225 | Deoxyribose-phosphate aldolase DeoC {Aquifex aeoli | 97.87 | |
| d1geqa_ | 248 | Trp synthase alpha-subunit {Archaeon Pyrococcus fu | 97.85 | |
| d1qo2a_ | 241 | Phosphoribosylformimino-5-aminoimidazole carboxami | 97.76 | |
| d1n7ka_ | 234 | Deoxyribose-phosphate aldolase DeoC {Archaeon Aero | 97.75 | |
| d1vc4a_ | 254 | Indole-3-glycerophosphate synthase, IPGS {Thermus | 97.73 | |
| d1ka9f_ | 251 | Cyclase subunit (or domain) of imidazoleglycerolph | 97.73 | |
| d1o0ya_ | 251 | Deoxyribose-phosphate aldolase DeoC {Thermotoga ma | 97.72 | |
| d2flia1 | 217 | D-ribulose-5-phosphate 3-epimerase {Streptococcus | 97.72 | |
| d2gl5a1 | 278 | Putative dehydratase protein STM2273 {Salmonella t | 97.7 | |
| d1h1ya_ | 220 | D-ribulose-5-phosphate 3-epimerase {Rice (Oryza sa | 97.66 | |
| d1jvna1 | 323 | Cyclase subunit (or domain) of imidazoleglycerolph | 97.62 | |
| d1xi3a_ | 206 | Thiamin phosphate synthase {Archaeon (Pyrococcus f | 97.59 | |
| d1rvka1 | 255 | Hypothetical protein Atu3453 {Agrobacterium tumefa | 97.57 | |
| d1i4na_ | 251 | Indole-3-glycerophosphate synthase, IPGS {Thermoto | 97.52 | |
| d1vzwa1 | 239 | Phosphoribosylformimino-5-aminoimidazole carboxami | 97.47 | |
| d1piia2 | 254 | Indole-3-glycerophosphate synthase, IPGS {Escheric | 97.41 | |
| d1p1xa_ | 250 | Deoxyribose-phosphate aldolase DeoC {Escherichia c | 97.37 | |
| d2tpsa_ | 226 | Thiamin phosphate synthase {Bacillus subtilis [Tax | 97.36 | |
| d1rpxa_ | 230 | D-ribulose-5-phosphate 3-epimerase {Potato (Solanu | 97.35 | |
| d1ujpa_ | 271 | Trp synthase alpha-subunit {Thermus thermophilus [ | 97.3 | |
| d2chra1 | 244 | Chlormuconate cycloisomerase {Alcaligenes eutrophu | 97.24 | |
| d1ojxa_ | 251 | Archaeal fructose 1,6-bisphosphate aldolase {Archa | 97.23 | |
| d1tzza1 | 247 | Hypothetical protein Bll6730 {Bradyrhizobium japon | 97.21 | |
| d1qo2a_ | 241 | Phosphoribosylformimino-5-aminoimidazole carboxami | 97.11 | |
| d1hg3a_ | 224 | Triosephosphate isomerase {Archaeon Pyrococcus woe | 97.09 | |
| d1yeya1 | 252 | RTS beta protein {Xanthomonas campestris pv. campe | 97.04 | |
| d1tqja_ | 221 | D-ribulose-5-phosphate 3-epimerase {Synechocystis | 96.96 | |
| d1jpma1 | 234 | L-Ala-D/L-Glu epimerase {Bacillus subtilis [TaxId: | 96.95 | |
| d2mnra1 | 227 | Mandelate racemase {Pseudomonas putida [TaxId: 303 | 96.87 | |
| d1w0ma_ | 226 | Triosephosphate isomerase {Thermoproteus tenax [Ta | 96.81 | |
| d1nu5a1 | 243 | Chlormuconate cycloisomerase {Pseudomonas sp. p51 | 96.76 | |
| d1wbha1 | 213 | KDPG aldolase {Escherichia coli [TaxId: 562]} | 96.71 | |
| d1muca1 | 242 | Muconate-lactonizing enzyme {Pseudomonas putida [T | 96.65 | |
| d1vhca_ | 212 | Hypothetical protein HI0047 {Haemophilus influenza | 96.64 | |
| d2a4aa1 | 256 | Fructose-1,6-bisphosphate aldolase {Plasmodium yoe | 96.61 | |
| d1tqxa_ | 221 | D-ribulose-5-phosphate 3-epimerase {Plasmodium fal | 96.6 | |
| d1viza_ | 229 | PcrB protein homolog YerE {Bacillus subtilis [TaxI | 96.52 | |
| d1gqna_ | 252 | Type I 3-dehydroquinate dehydratase {Salmonella ty | 96.49 | |
| d1to3a_ | 291 | Putative aldolase YihT {Salmonella typhimurium [Ta | 96.39 | |
| d2f6ua1 | 231 | (S)-3-O-geranylgeranylglyceryl phosphate synthase | 96.22 | |
| d1vcva1 | 226 | Deoxyribose-phosphate aldolase DeoC {Archaeon Pyro | 96.14 | |
| d1muma_ | 289 | 2-methylisocitrate lyase {Escherichia coli [TaxId: | 96.13 | |
| d1wufa1 | 244 | N-acylamino acid racemase {Listeria innocua [TaxId | 96.1 | |
| d1s2wa_ | 275 | Phosphoenolpyruvate mutase {Blue mussel (Mytilus e | 95.94 | |
| d1q6oa_ | 213 | 3-keto-L-gulonate 6-phosphate decarboxylase {Esche | 95.82 | |
| d1sjda1 | 242 | N-acylamino acid racemase {Amycolatopsis sp. [TaxI | 95.78 | |
| d2gdqa1 | 256 | Hypothetical protein YitF {Bacillus subtilis [TaxI | 95.74 | |
| d1mxsa_ | 216 | KDPG aldolase {Pseudomonas putida [TaxId: 303]} | 95.72 | |
| d2czda1 | 206 | Orotidine 5'-monophosphate decarboxylase (OMP deca | 95.5 | |
| d1wbha1 | 213 | KDPG aldolase {Escherichia coli [TaxId: 562]} | 95.38 | |
| d1f74a_ | 293 | N-acetylneuraminate lyase {Haemophilus influenzae | 95.26 | |
| d1zfja1 | 365 | Inosine monophosphate dehydrogenase (IMPDH) {Strep | 95.23 | |
| d1vhca_ | 212 | Hypothetical protein HI0047 {Haemophilus influenza | 95.22 | |
| d1mxsa_ | 216 | KDPG aldolase {Pseudomonas putida [TaxId: 303]} | 95.18 | |
| d1eixa_ | 231 | Orotidine 5'-monophosphate decarboxylase (OMP deca | 95.16 | |
| d1dbta_ | 237 | Orotidine 5'-monophosphate decarboxylase (OMP deca | 95.13 | |
| d1r0ma1 | 243 | N-acylamino acid racemase {Deinococcus radiodurans | 95.12 | |
| d1eepa_ | 388 | Inosine monophosphate dehydrogenase (IMPDH) {Lyme | 95.08 | |
| d1w3ia_ | 293 | 2-keto-3-deoxy gluconate aldolase Eda {Sulfolobus | 94.73 | |
| d1jr1a1 | 378 | Inosine monophosphate dehydrogenase (IMPDH) {Chine | 94.52 | |
| d1km4a_ | 212 | Orotidine 5'-monophosphate decarboxylase (OMP deca | 94.35 | |
| d1wuea1 | 241 | N-acylamino acid racemase {Enterococcus faecalis [ | 94.17 | |
| d1twda_ | 247 | Copper homeostasis protein CutC {Shigella flexneri | 94.04 | |
| d1xkya1 | 292 | Dihydrodipicolinate synthase {Bacillus anthracis [ | 93.95 | |
| d1qapa1 | 167 | Quinolinic acid phosphoribosyltransferase (Nicotin | 93.89 | |
| d1vrda1 | 330 | Inosine monophosphate dehydrogenase (IMPDH) {Therm | 93.86 | |
| d1gvfa_ | 284 | Tagatose-1,6-bisphosphate aldolase {Escherichia co | 93.69 | |
| d1jdfa1 | 309 | D-glucarate dehydratase {Escherichia coli [TaxId: | 93.67 | |
| d1vc4a_ | 254 | Indole-3-glycerophosphate synthase, IPGS {Thermus | 93.6 | |
| d1wa3a1 | 202 | KDPG aldolase {Thermotoga maritima [TaxId: 2336]} | 93.25 | |
| d1o66a_ | 260 | Ketopantoate hydroxymethyltransferase PanB {Neisse | 93.17 | |
| d1s2wa_ | 275 | Phosphoenolpyruvate mutase {Blue mussel (Mytilus e | 93.0 | |
| d1qpoa1 | 169 | Quinolinic acid phosphoribosyltransferase (Nicotin | 92.29 | |
| d1xkya1 | 292 | Dihydrodipicolinate synthase {Bacillus anthracis [ | 92.17 | |
| d1hl2a_ | 295 | N-acetylneuraminate lyase {Escherichia coli [TaxId | 91.85 | |
| d1rvga_ | 305 | Fructose-bisphosphate aldolase (FBP aldolase) {The | 91.82 | |
| d1pkla2 | 258 | Pyruvate kinase, N-terminal domain {Leishmania mex | 91.53 | |
| d1o5ka_ | 295 | Dihydrodipicolinate synthase {Thermotoga maritima | 91.48 | |
| d1krwa_ | 123 | NTRC receiver domain {Salmonella typhimurium [TaxI | 91.47 | |
| d1v5xa_ | 200 | N-(5'phosphoribosyl)antranilate isomerase, PRAI {T | 91.46 | |
| d1y0ea_ | 222 | Putative N-acetylmannosamine-6-phosphate 2-epimera | 91.45 | |
| d1ykwa1 | 283 | Ribulose 1,5-bisphosphate carboxylase-oxygenase {C | 91.32 | |
| d1m5wa_ | 242 | Pyridoxine 5'-phosphate synthase {Escherichia coli | 91.31 | |
| d2p10a1 | 197 | Uncharacterized protein Mll9387 {Mesorhizobium lot | 91.31 | |
| d1gtea2 | 312 | Dihydropyrimidine dehydrogenase, domain 4 {Pig (Su | 90.68 | |
| d1hl2a_ | 295 | N-acetylneuraminate lyase {Escherichia coli [TaxId | 90.67 | |
| d1muma_ | 289 | 2-methylisocitrate lyase {Escherichia coli [TaxId: | 90.64 | |
| d1ykwa1 | 283 | Ribulose 1,5-bisphosphate carboxylase-oxygenase {C | 90.18 | |
| d1xxxa1 | 296 | Dihydrodipicolinate synthase {Mycobacterium tuberc | 89.97 | |
| d1qkka_ | 140 | Transcriptional regulatory protein DctD, receiver | 89.82 | |
| d1jpdx1 | 208 | L-Ala-D/L-Glu epimerase {Escherichia coli [TaxId: | 89.56 | |
| d1oy0a_ | 262 | Ketopantoate hydroxymethyltransferase PanB {Mycoba | 89.42 | |
| d2pl1a1 | 119 | PhoP receiver domain {Escherichia coli [TaxId: 562 | 89.35 | |
| d1twda_ | 247 | Copper homeostasis protein CutC {Shigella flexneri | 89.04 | |
| d1o4ua1 | 170 | Quinolinic acid phosphoribosyltransferase (Nicotin | 88.74 | |
| d2a6na1 | 292 | Dihydrodipicolinate synthase {Escherichia coli [Ta | 88.6 | |
| d1m3ua_ | 262 | Ketopantoate hydroxymethyltransferase PanB {Escher | 88.47 | |
| d1piia1 | 198 | N-(5'phosphoribosyl)antranilate isomerase, PRAI {E | 88.46 | |
| d1wdda1 | 325 | Ribulose 1,5-bisphosphate carboxylase-oxygenase {R | 88.35 | |
| d1o66a_ | 260 | Ketopantoate hydroxymethyltransferase PanB {Neisse | 88.34 | |
| d1dbwa_ | 123 | Transcriptional regulatory protein FixJ, receiver | 88.15 | |
| d1vqta1 | 198 | Orotidine 5'-monophosphate decarboxylase (OMP deca | 87.88 | |
| d1xxxa1 | 296 | Dihydrodipicolinate synthase {Mycobacterium tuberc | 87.72 | |
| d1geha1 | 307 | Ribulose 1,5-bisphosphate carboxylase-oxygenase {A | 87.64 | |
| d1ny5a1 | 137 | Transcriptional activator sigm54 (NtrC1), N-termin | 87.51 | |
| d3bofa1 | 260 | Cobalamin-dependent methionine synthase MetH, C-te | 87.32 | |
| d1p0ka_ | 329 | Isopentenyl-diphosphate delta-isomerase {Bacillus | 87.28 | |
| d1e0ta2 | 246 | Pyruvate kinase, N-terminal domain {Escherichia co | 86.67 | |
| d2a6na1 | 292 | Dihydrodipicolinate synthase {Escherichia coli [Ta | 86.61 | |
| d1dosa_ | 358 | Fructose-bisphosphate aldolase (FBP aldolase) {Esc | 86.22 | |
| d1qwga_ | 251 | (2r)-phospho-3-sulfolactate synthase ComA {Archaeo | 86.06 | |
| d1peya_ | 119 | Sporulation response regulator Spo0F {Bacillus sub | 85.78 | |
| d1o5ka_ | 295 | Dihydrodipicolinate synthase {Thermotoga maritima | 85.11 | |
| d1nsja_ | 205 | N-(5'phosphoribosyl)antranilate isomerase, PRAI {T | 85.03 | |
| d1nvma2 | 289 | 4-hydroxy-2-oxovalerate aldolase DmpG, catalytic d | 84.16 | |
| d2a9pa1 | 117 | DNA-binding response regulator MicA, N-terminal do | 84.04 | |
| d1f6ya_ | 262 | Methyltetrahydrofolate: corrinoid/iron-sulfur prot | 83.9 | |
| d1m3ua_ | 262 | Ketopantoate hydroxymethyltransferase PanB {Escher | 83.89 | |
| d1u0sy_ | 118 | CheY protein {Thermotoga maritima [TaxId: 2336]} | 83.04 | |
| d2cu0a1 | 368 | Inosine monophosphate dehydrogenase (IMPDH) {Pyroc | 82.91 | |
| d1vr6a1 | 338 | 3-deoxy-D-arabino-heptulosonate-7-phosphate syntha | 82.27 | |
| d1pvna1 | 362 | Inosine monophosphate dehydrogenase (IMPDH) {Tritr | 81.87 | |
| d1sfla_ | 236 | Type I 3-dehydroquinate dehydratase {Staphylococcu | 81.83 | |
| d2ayxa1 | 133 | Sensor kinase protein RcsC, C-terminal domain {Esc | 81.68 | |
| d1kkoa1 | 251 | beta-Methylaspartase {Citrobacter amalonaticus [Ta | 81.53 | |
| d2q02a1 | 271 | Putative cytoplasmic protein STM4435 {Salmonella t | 80.8 | |
| d1yxya1 | 230 | Putative N-acetylmannosamine-6-phosphate 2-epimera | 80.25 |
| >d1z41a1 c.1.4.1 (A:2-338) NADPH dehydrogenase NamA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: NADPH dehydrogenase NamA species: Bacillus subtilis [TaxId: 1423]
Probab=100.00 E-value=4.2e-45 Score=343.00 Aligned_cols=255 Identities=14% Similarity=0.139 Sum_probs=203.1
Q ss_pred ccCCccccccCeecCCcEEEccCCC---------CChHHHHHH-HHHcCCCcEEEecceeecccc---------ccccch
Q 020423 54 ILHTKAEMVARQYLPPWFSVAPMMD---------WTDNHYRTL-ARLISKHAWLYTEMLAAETII---------YQQGNL 114 (326)
Q Consensus 54 ~~l~~p~~ig~~~l~nrivlAPM~~---------~s~~~~r~~-~~~~Gg~gli~te~~~~~~~~---------~~~~~~ 114 (326)
+.||+|++||+++|||||+||||+. .|+..+++| .|+.||+|||+||.+.+++.. +.++++
T Consensus 2 k~LF~P~~ig~~~lkNRiv~aPm~~~~~~~~~G~~t~~~~~~y~~rA~gG~GlIite~~~V~~~~~~~~~~~~~~~d~~i 81 (337)
T d1z41a1 2 RKLFTPITIKDMTLKNRIVMSPMCMYSSHEKDGKLTPFHMAHYISRAIGQVGLIIVEASAVNPQGRITDQDLGIWSDEHI 81 (337)
T ss_dssp CGGGSCEEETTEEESSSEEECCCCCCCCTTSSSCCCHHHHHHHHHHHHTTCSEEEEEEEESSGGGCSSTTSCBCSSTHHH
T ss_pred CCCCCCceECCEEECCCEEeCccCCCccCCCCCCCCHHHHHHHHHHHcCCceEEEECcEEEccccccccCccccccHHHH
Confidence 4799999999999999999999953 467888888 556799999999998877432 333344
Q ss_pred hhhhh----cCCCCCcEEEEecCCC-----------------------------------HHHHHHHHHHHHHCCCCEEE
Q 020423 115 DRFLA----FSPEQHPIVLQIGGSN-----------------------------------LDNLAKATELANAYNYDEIN 155 (326)
Q Consensus 115 ~~~~~----~~~~~~piivQL~g~~-----------------------------------~~~f~~aA~~a~~aG~d~Ie 155 (326)
..+.+ +|+++.++++||++.. .++|+++|++|+++|||+||
T Consensus 82 ~~~k~l~~avh~~G~~i~~QL~h~Gr~~~~~~~~~~ps~~~~~~~~~~p~~lt~~eI~~ii~~f~~AA~ra~~AGfDGVE 161 (337)
T d1z41a1 82 EGFAKLTEQVKEQGSKIGIQLAHAGRKAELEGDIFAPSAIAFDEQSATPVEMSAEKVKETVQEFKQAAARAKEAGFDVIE 161 (337)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEECCGGGCCCSSCCEESSSCCSSTTSCCCEECCHHHHHHHHHHHHHHHHHHHHTTCSEEE
T ss_pred HHHHHHHHHhhccccccchhhhcCCCcccccCCCCCCcccccccCCCCCcccCHHHHHHHHHHHHHHHHHHHHcCCCeEE
Confidence 44432 7899999999997531 37899999999999999999
Q ss_pred ecCC---------CCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCC--CccHHHHHHHHHHHhhh
Q 020423 156 LNCG---------CPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDD--HDSYNQLCDFIYKVSSL 224 (326)
Q Consensus 156 in~g---------~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~--~~~~~e~~~~ia~~le~ 224 (326)
||.+ +|. .|+|+|+|||+++||.||+.||+++||+.++.|+.+|++..... ..+.++..+ +++.+++
T Consensus 162 iH~ahGyLl~qFlSp~-~N~RtDeYGGs~enR~Rf~~Eiv~air~~~~~~~~vr~~~~~~~~~g~~~~~~~~-~~~~l~~ 239 (337)
T d1z41a1 162 IHAAHGYLIHEFLSPL-SNHRTDEYGGSPENRYRFLREIIDEVKQVWDGPLFVRVSASDYTDKGLDIADHIG-FAKWMKE 239 (337)
T ss_dssp EEECTTSHHHHHHCTT-TCCCCSTTSSSHHHHHHHHHHHHHHHHHHCCSCEEEEEECCCCSTTSCCHHHHHH-HHHHHHH
T ss_pred eeccCcceeeeecCCc-cccccccccchhhhhhhHHHHHHHHHhhhhcccceEEecccccccCccchhhhHH-HHHHHHH
Confidence 9987 677 46999999999999999999999999999999999999875322 235667666 5667889
Q ss_pred CCccEEEEecCCcccCCCCcCCcCCCCCcc-HHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhC-CChhhhhHHHHhC
Q 020423 225 SPTRHFIIHSRKALLNGISPAENRTIPPLK-YEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKG-AHHVMVGRAAYQN 302 (326)
Q Consensus 225 ~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~-~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~G-aD~V~iGRall~d 302 (326)
+|+|+++++.+...... ....+.. ......+ |+.+++||+++|+|+++++++++|+.| ||+|++||++++|
T Consensus 240 ~g~d~~~~s~g~~~~~~------~~~~~~~~~~~~~~i-k~~~~~pvi~~G~i~~~~~ae~~l~~g~~D~V~~gR~~iad 312 (337)
T d1z41a1 240 QGVDLIDCSSGALVHAD------INVFPGYQVSFAEKI-REQADMATGAVGMITDGSMAEEILQNGRADLIFIGRELLRD 312 (337)
T ss_dssp TTCCEEEEECCCSSCCC------CCCCTTTTHHHHHHH-HHHHCCEEEECSSCCSHHHHHHHHHTTSCSEEEECHHHHHC
T ss_pred cCCcccccccccccccc------cccCCcccHHHHHHH-HHhcCceEEEeCCcCCHHHHHHHHHCCCcceehhhHHHHhC
Confidence 99999999876532211 1112222 3344444 444599999999999999999999987 9999999999999
Q ss_pred CchhHHhHHHhhhCCC
Q 020423 303 PWYTLGHVDTAIYGAP 318 (326)
Q Consensus 303 P~l~~~~i~~~~~~~~ 318 (326)
|+ |++++.+.+....
T Consensus 313 Pd-~~~k~~~~~~~~i 327 (337)
T d1z41a1 313 PF-FARTAAKQLNTEI 327 (337)
T ss_dssp TT-HHHHHHHHTTCCC
T ss_pred ch-HHHHHHhhCCCCC
Confidence 99 6888877765553
|
| >d1ps9a1 c.1.4.1 (A:1-330) 2,4-dienoyl-CoA reductase, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: 2,4-dienoyl-CoA reductase, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=4.8e-45 Score=341.69 Aligned_cols=255 Identities=13% Similarity=0.125 Sum_probs=196.9
Q ss_pred cccCCccccccCeecCCcEEEccCCC-------CChHHHHHH-HHHcCCCcEEEecceeeccc---------cccccchh
Q 020423 53 IILHTKAEMVARQYLPPWFSVAPMMD-------WTDNHYRTL-ARLISKHAWLYTEMLAAETI---------IYQQGNLD 115 (326)
Q Consensus 53 ~~~l~~p~~ig~~~l~nrivlAPM~~-------~s~~~~r~~-~~~~Gg~gli~te~~~~~~~---------~~~~~~~~ 115 (326)
++.||+|++||+++|||||+||||.. .++..++|| .|+.||+|||+||++.++.. ++++.+++
T Consensus 2 y~~LF~P~~ig~~~lkNRiv~apm~~~~~~~~~~~~~~~~yy~~rA~gG~glIi~e~~~v~~~~~~~~~~~~~~~d~~i~ 81 (330)
T d1ps9a1 2 YPSLFAPLDLGFTTLKNRVLMGSMHTGLEEYPDGAERLAAFYAERARHGVALIVSGGIAPDLTGVGMEGGAMLNDASQIP 81 (330)
T ss_dssp CTTTTCCEECSSCEESSSEEECCCCCSCTTSTTHHHHHHHHHHHHHHTTCSEEEEEEEBSSSTTCSBTTCCBCCSGGGHH
T ss_pred chhhCCCccCCCEEeCCCcEeCCCCCCcCCCCCCcHHHHHHHHHHHhCCeEEEEEeeeEEcCCccccCCCcccCCccccc
Confidence 67999999999999999999999964 245667777 55779999999999987642 23344444
Q ss_pred hhhh----cCCCCCcEEEEecCCC----------------------------------HHHHHHHHHHHHHCCCCEEEec
Q 020423 116 RFLA----FSPEQHPIVLQIGGSN----------------------------------LDNLAKATELANAYNYDEINLN 157 (326)
Q Consensus 116 ~~~~----~~~~~~piivQL~g~~----------------------------------~~~f~~aA~~a~~aG~d~Iein 157 (326)
.|.+ +|+++.++++||++.. .++|+++|++|+++|||+||||
T Consensus 82 ~~k~l~~~vh~~g~~i~~QL~H~Gr~~~~~~~~~ps~~~~~~~~~~p~~lt~~eI~~ii~~f~~aA~ra~~AGfDgVEIh 161 (330)
T d1ps9a1 82 HHRTITEAVHQEGGKIALQILHTGRYSYQPHLVAPSALQAPINRFVPHELSHEEILQLIDNFARCAQLAREAGYDGVEVM 161 (330)
T ss_dssp HHHHHHHHHHHTTCCEEEEECCCGGGSBSTTCEESSSCCCTTCSSCCEECCHHHHHHHHHHHHHHHHHHHHTTCSEEEEE
T ss_pred ccccceeeeecCCCeehhhhhhcCCccccCcccCCccccccccCCCChhcChhHHHHHHHHHHHHHHHHHHhCcCeeeec
Confidence 4433 7999999999998531 3789999999999999999999
Q ss_pred CC---------CCCCcccCCCCccccccCCHHHHHHHHHHHHhcCC--CcEEEEeccC--CCCCccHHHHHHHHHHHhhh
Q 020423 158 CG---------CPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTN--VPVSVKCRIG--VDDHDSYNQLCDFIYKVSSL 224 (326)
Q Consensus 158 ~g---------~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~--~pv~vK~r~g--~~~~~~~~e~~~~ia~~le~ 224 (326)
++ +|.. |.|+|+|||+++||.||+.|++++||++++ +++.+|++.. .++..+.++..+ +++.+++
T Consensus 162 ~ahGyLl~qFlSp~~-N~RtDeYGGs~enR~Rf~~Eii~air~~vg~d~~v~~R~s~~d~~~~g~~~~~~~~-~~~~l~~ 239 (330)
T d1ps9a1 162 GSEGYLINEFLTLRT-NQRSDQWGGDYRNRMRFAVEVVRAVRERVGNDFIIIYRLSMLDLVEDGGTFAETVE-LAQAIEA 239 (330)
T ss_dssp ECBTSHHHHHHCTTT-CCCCSTTSSSHHHHHHHHHHHHHHHHHHHCSSSEEEEEEEEECCSTTCCCHHHHHH-HHHHHHH
T ss_pred cchHHHHHHHHHhhc-ccccccCCccHhhhhHHHHHHHHHHHHHcCCCceeEecccccccccCCCCHHHHHH-HHHHHHH
Confidence 87 6774 699999999999999999999999999985 4555555542 122335677776 5667788
Q ss_pred CCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhC-CChhhhhHHHHhCC
Q 020423 225 SPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKG-AHHVMVGRAAYQNP 303 (326)
Q Consensus 225 ~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~G-aD~V~iGRall~dP 303 (326)
.|+|+++++.+...... +......+...+..+.+.+|+.+++|||++|+|++++.++++++.| ||+|++||++|+||
T Consensus 240 ~g~d~~~~~~g~~~~~~--~~~~~~~~~~~~~~~~~~ik~~~~~pvi~~G~i~~~~~ae~~l~~g~~D~V~~gR~~iadP 317 (330)
T d1ps9a1 240 AGATIINTGIGWHEARI--PTIATPVPRGAFSWVTRKLKGHVSLPLVTTNRINDPQVADDILSRGDADMVSMARPFLADA 317 (330)
T ss_dssp HTCSEEEEEECBTTCSS--CSSSTTSCTTTTHHHHHHHTTSCSSCEEECSSCCSHHHHHHHHHTTSCSEEEESTHHHHCT
T ss_pred hhhhhhhcccccccccc--cccCCCCcchhHHHHHHHHHhhCCceEEEeCCCCCHHHHHHHHHCCCcchhHhhHHHHhCh
Confidence 99999999865431111 1111112223344555556666799999999999999999999987 99999999999999
Q ss_pred chhHHhHHH
Q 020423 304 WYTLGHVDT 312 (326)
Q Consensus 304 ~l~~~~i~~ 312 (326)
+ |++++.+
T Consensus 318 ~-~~~k~~~ 325 (330)
T d1ps9a1 318 E-LLSKAQS 325 (330)
T ss_dssp T-HHHHHHT
T ss_pred h-HHHHHHc
Confidence 9 5777654
|
| >d1vhna_ c.1.4.1 (A:) Putative flavin oxidoreducatase TM0096 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Putative flavin oxidoreducatase TM0096 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=1.1e-44 Score=335.70 Aligned_cols=229 Identities=24% Similarity=0.392 Sum_probs=191.9
Q ss_pred cEEEccCCCCChHHHHHHHHHcCCCcEEEecceeeccccccccchhhhhhcCCCCCcEEEEecCCCHHHHHHHHHHHHHC
Q 020423 70 WFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSNLDNLAKATELANAY 149 (326)
Q Consensus 70 rivlAPM~~~s~~~~r~~~~~~Gg~gli~te~~~~~~~~~~~~~~~~~~~~~~~~~piivQL~g~~~~~f~~aA~~a~~a 149 (326)
|+.+|||+++||.+||.+++..| +++++|||++++.+.+.......+. .++.++|+++||+|++++.++++|+.+.+
T Consensus 2 ki~LAPM~g~td~~fR~l~~~~g-~~~~~Temi~~~~~~~~~~~~~~~~-~~~~e~p~~~Ql~g~~p~~~~~aa~~~~~- 78 (305)
T d1vhna_ 2 KVGLAPMAGYTDSAFRTLAFEWG-ADFAFSEMVSAKGFLMNSQKTEELL-PQPHERNVAVQIFGSEPNELSEAARILSE- 78 (305)
T ss_dssp EEEECCCTTTCSHHHHHHHHTTT-CCCEECSCEEHHHHHTTCHHHHHHS-CCTTCTTEEEEEECSCHHHHHHHHHHHTT-
T ss_pred eEEEECcCCCccHHHHHHHHHHC-cCEEEECCEEechhhhCChhhHhhc-cCCCCCCeEEEEeccchhhhhhhhhhhhh-
Confidence 68999999999999999999886 7999999999999887665544443 56778899999999999999999987655
Q ss_pred CCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccE
Q 020423 150 NYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRH 229 (326)
Q Consensus 150 G~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~ 229 (326)
|+|+|+||+|||.+.+.+ ++||+.|+++|+.+.++++++++.+++||++|+|.|+++.. ..+ +++.++++|++.
T Consensus 79 ~~~~IdlN~GCP~~~v~~-~g~Ga~Ll~~p~~~~~iv~~~~~~~~~pvsvK~RlG~d~~~-~~~----~~~~l~~~G~~~ 152 (305)
T d1vhna_ 79 KYKWIDLNAGCPVRKVVK-EGAGGALLKDLRHFRYIVRELRKSVSGKFSVKTRLGWEKNE-VEE----IYRILVEEGVDE 152 (305)
T ss_dssp TCSEEEEEECCCCHHHHH-TTCGGGGGSCHHHHHHHHHHHHHHCSSEEEEEEESCSSSCC-HHH----HHHHHHHTTCCE
T ss_pred heeeeeEEEEecchhhcc-cccceeeccCHHHHHHHhhhhhhhcccccccccccCcccch-hhH----HHHHHHHhCCcE
Confidence 999999999999987665 45799999999999999999999999999999999997654 333 344667899999
Q ss_pred EEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHH-hCCChhhhhHHHHhCCchhHH
Q 020423 230 FIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQNPWYTLG 308 (326)
Q Consensus 230 I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~-~GaD~V~iGRall~dP~l~~~ 308 (326)
|+||+|+..+... .+.+|+.+++++ .++|||+||||.|.+|+.++++ +|||+||+||+++.|||+|.
T Consensus 153 itvH~Rt~~q~~~--------~~a~~~~i~~~~---~~ipvi~NGdI~s~~d~~~~l~~tg~dgVMiGRgal~nP~if~- 220 (305)
T d1vhna_ 153 VFIHTRTVVQSFT--------GRAEWKALSVLE---KRIPTFVSGDIFTPEDAKRALEESGCDGLLVARGAIGRPWIFK- 220 (305)
T ss_dssp EEEESSCTTTTTS--------SCCCGGGGGGSC---CSSCEEEESSCCSHHHHHHHHHHHCCSEEEESGGGTTCTTHHH-
T ss_pred EEechhhhhhccc--------cchhhhHHHhhh---hhhhhhcccccccHHHHHHHHHhcCCCeEehhHHHHHhhhHhh-
Confidence 9999999754332 234577665543 2799999999999999999998 79999999999999999654
Q ss_pred hHHHhhhCCCC
Q 020423 309 HVDTAIYGAPS 319 (326)
Q Consensus 309 ~i~~~~~~~~~ 319 (326)
++++.+++.+.
T Consensus 221 ~i~~~l~~~~~ 231 (305)
T d1vhna_ 221 QIKDFLRSGKY 231 (305)
T ss_dssp HHHHHHHHSCC
T ss_pred hhhhhhcCCCc
Confidence 56666665443
|
| >d1djqa1 c.1.4.1 (A:1-340) Trimethylamine dehydrogenase, N-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Trimethylamine dehydrogenase, N-terminal domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=100.00 E-value=6e-43 Score=328.86 Aligned_cols=258 Identities=12% Similarity=0.054 Sum_probs=188.3
Q ss_pred ccccCCccccccCeecCCcEEEccCCCC-----ChHHHHHH-HHHcCCCcEEEecceeeccc----------cccccchh
Q 020423 52 NIILHTKAEMVARQYLPPWFSVAPMMDW-----TDNHYRTL-ARLISKHAWLYTEMLAAETI----------IYQQGNLD 115 (326)
Q Consensus 52 ~~~~l~~p~~ig~~~l~nrivlAPM~~~-----s~~~~r~~-~~~~Gg~gli~te~~~~~~~----------~~~~~~~~ 115 (326)
++..||+|++||+++|||||+||||+.. ++....++ .++.||+|||+||++.+.+. +++++.++
T Consensus 5 ~~~~LF~P~~ig~~~l~NRiv~apm~~~~~~~~~~~~~~~~~~rA~gG~gliite~~~v~~~~~~~~~~~~~~~~d~~i~ 84 (340)
T d1djqa1 5 KHDILFEPIQIGPKTLRNRFYQVPHAIGAGSDKPGFQSAHRSVKAEGGWAALNTEYCSINPESDDTHRLSARIWDEGDVR 84 (340)
T ss_dssp GGGGGGSCEEETTEEESSSEEECCCCCSCTTTCHHHHHHHHHHHHHTTCSEEEEEEEESSTTSCCTTSCCEECSSHHHHH
T ss_pred ChhhcCCCceECCEEECCCeEeCCCCCCCCCCCCHHHHHHHHHHhccCeEEEEEEEEEeccccccCCCCCccccceeecc
Confidence 4568999999999999999999999753 22344454 56789999999999987742 22233344
Q ss_pred hhhh----cCCCCCcEEEEecCCC---------------------------------------HHHHHHHHHHHHHCCCC
Q 020423 116 RFLA----FSPEQHPIVLQIGGSN---------------------------------------LDNLAKATELANAYNYD 152 (326)
Q Consensus 116 ~~~~----~~~~~~piivQL~g~~---------------------------------------~~~f~~aA~~a~~aG~d 152 (326)
.|.+ +|+++.++++||++.. .++|+++|++|+++|||
T Consensus 85 ~~~~l~~~vh~~g~~i~~Ql~H~Gr~~~~~~~~~~~~~~s~~~~~~~~~~~~~~mt~~eI~~ii~~f~~aA~~a~~aGfD 164 (340)
T d1djqa1 85 NLKAMTDEVHKYGALAGVELWYGGAHAPNMESRATPRGPSQYASEFETLSYCKEMDLSDIAQVQQFYVDAAKRSRDAGFD 164 (340)
T ss_dssp HHHHHHHHHHHTTCEEEEEEECCGGGSCCTTTCCCCEESSCCBCSSSTTCBCEECCHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred hhhhhHHHhhcccceeeEeeeeccccccccccCCcccccccccccccCCCCCccCCHHHHHHHHHHHHHHHHHHHHhccc
Confidence 4432 7899999999997521 36899999999999999
Q ss_pred EEEecCC---------CCCCcccCCCCccccccCCHHHHHHHHHHHHhcC--CCcEEEEeccCCC--CC-ccHHHHHHHH
Q 020423 153 EINLNCG---------CPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVD--DH-DSYNQLCDFI 218 (326)
Q Consensus 153 ~Iein~g---------~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~--~~pv~vK~r~g~~--~~-~~~~e~~~~i 218 (326)
+||||++ ||. +|+|+|+|||+++||.||+.||+++||+++ ++||.+|++.... .. .+.++... .
T Consensus 165 gVEih~ahGyLl~qFls~~-~N~R~D~yGGs~enR~Rf~~EIi~aIr~~vg~~~~i~~R~s~~~~~~~~~~~~e~~~~-~ 242 (340)
T d1djqa1 165 IVYVYGAHSYLPLQFLNPY-YNKRTDKYGGSLENRARFWLETLEKVKHAVGSDCAIATRFGVDTVYGPGQIEAEVDGQ-K 242 (340)
T ss_dssp EEEEEECTTCHHHHHHCTT-TCCCCSTTSSSHHHHHHHHHHHHHHHHHHHTTTSEEEEEEEEECSSCTTSCCTTTHHH-H
T ss_pred eeeeeccccchhhhhhhhc-cccccccccccHHhhhHHHHHHHHHHHHHHhhhhhceeeccccccccCCCCchhhhHH-H
Confidence 9999987 787 469999999999999999999999999998 4677777765211 00 01111111 1
Q ss_pred HHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhC-CChhhhhH
Q 020423 219 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKG-AHHVMVGR 297 (326)
Q Consensus 219 a~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~G-aD~V~iGR 297 (326)
...+++.|+|+++|+.+.....+..........+..+..+.+.+|+.+++|||++|+|+|+++++++++.| ||+|++||
T Consensus 243 ~~~l~~~~vd~~~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~pVi~~G~i~~~~~a~~~l~~G~aDlV~~gR 322 (340)
T d1djqa1 243 FVEMADSLVDMWDITIGDIAEWGEDAGPSRFYQQGHTIPWVKLVKQVSKKPVLGVGRYTDPEKMIEIVTKGYADIIGCAR 322 (340)
T ss_dssp HHHHHTTTCSEEEEEESCSTTGGGTSCCTTTCCTTTTHHHHHHHHTTCSSCEEECSCCCCHHHHHHHHHTTSCSBEEESH
T ss_pred HHHHHhhccceeeeeecccccccccccccccCCccccHHHHHHHHHHcCCeEEEECCCCCHHHHHHHHHCCCccchhhHH
Confidence 23456799999999876432111110000111122223334455566699999999999999999999988 99999999
Q ss_pred HHHhCCchhHHhHHH
Q 020423 298 AAYQNPWYTLGHVDT 312 (326)
Q Consensus 298 all~dP~l~~~~i~~ 312 (326)
++++||+ |++++++
T Consensus 323 ~~iadPd-l~~k~~~ 336 (340)
T d1djqa1 323 PSIADPF-LPQKVEQ 336 (340)
T ss_dssp HHHHCTT-HHHHHHT
T ss_pred HHHHCcc-HHHHHHc
Confidence 9999999 6777765
|
| >d1vyra_ c.1.4.1 (A:) Pentaerythritol tetranirate reductase {Enterobacter cloacae [TaxId: 550]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Pentaerythritol tetranirate reductase species: Enterobacter cloacae [TaxId: 550]
Probab=100.00 E-value=1.2e-39 Score=308.61 Aligned_cols=245 Identities=13% Similarity=0.117 Sum_probs=184.7
Q ss_pred ccCCccccccCeecCCcEEEccCCC--------C-ChHHHHHHHHHcCCCcEEEecceeecccc---------ccccchh
Q 020423 54 ILHTKAEMVARQYLPPWFSVAPMMD--------W-TDNHYRTLARLISKHAWLYTEMLAAETII---------YQQGNLD 115 (326)
Q Consensus 54 ~~l~~p~~ig~~~l~nrivlAPM~~--------~-s~~~~r~~~~~~Gg~gli~te~~~~~~~~---------~~~~~~~ 115 (326)
..||+|++||+++||||++|+||++ + ++....++.+ .+|.||++||.+.+++.. +.++.++
T Consensus 2 e~LF~P~~ig~~~lkNRiv~apm~~~~a~~~g~~~~~~~~~yy~~-ra~~Glii~e~~~V~~~~~~~~~~~~l~~d~~i~ 80 (363)
T d1vyra_ 2 EKLFTPLKVGAVTAPNRVFMAPLTRLRSIEPGDIPTPLMGEYYRQ-RASAGLIISEATQISAQAKGYAGAPGLHSPEQIA 80 (363)
T ss_dssp CSTTSCEEETTEEESSSEEECCCCCCCCBTTTTBCCHHHHHHHHH-TTTSSEEEEEEEESSSTTCCSTTCCBSSSHHHHH
T ss_pred cccCCCccCCCEEECCCeEEccccCCcCCCCCCCCHHHHHHHHHH-HcCcCEEEEeeeEECccccCCCCCCccCChhhcc
Confidence 3799999999999999999999964 2 3344456654 456799999998887532 2223333
Q ss_pred hhhh----cCCCCCcEEEEecCCC------------------------------------------------------HH
Q 020423 116 RFLA----FSPEQHPIVLQIGGSN------------------------------------------------------LD 137 (326)
Q Consensus 116 ~~~~----~~~~~~piivQL~g~~------------------------------------------------------~~ 137 (326)
.+.+ +|+++.++++||+|.. .+
T Consensus 81 ~~k~l~~~vh~~G~~i~~QL~H~Gr~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~p~~mt~~eI~~ii~ 160 (363)
T d1vyra_ 81 AWKKITAGVHAEDGRIAVQLWHTGRISHSSIQPGGQAPVSASALNANTRTSLRDENGNAIRVDTTTPRALELDEIPGIVN 160 (363)
T ss_dssp HHHHHHHHHHHTTCCEEEEEECCTTSSCGGGSGGGCCCEESSSCCCCSEEEEECTTSCEEEEECCCCEECCGGGHHHHHH
T ss_pred cchhhhhhhhhcCCeeeeeeeccCccccccccCCCcceeecccccccccccccCcccccccCCCCCchhhhHHHHHHHHH
Confidence 3322 6899999999996421 26
Q ss_pred HHHHHHHHHHHCCCCEEEecCC---------CCCCcccCCCCccccccCCHHHHHHHHHHHHhcCC-CcEEEEeccCC--
Q 020423 138 NLAKATELANAYNYDEINLNCG---------CPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTN-VPVSVKCRIGV-- 205 (326)
Q Consensus 138 ~f~~aA~~a~~aG~d~Iein~g---------~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~-~pv~vK~r~g~-- 205 (326)
+|++||++|+++|||+||||++ +|. .|+|+|+|||+++||.||+.||+++||++++ .+|.++++...
T Consensus 161 ~f~~AA~rA~~aGfDgVEIH~ahGYLl~qFlSp~-~N~RtDeYGGs~eNR~Rf~~Eii~aIr~~~g~d~i~~r~s~~~~~ 239 (363)
T d1vyra_ 161 DFRQAVANAREAGFDLVELHSAHGYLLHQFLSPS-SNQRTDQYGGSVENRARLVLEVVDAVCNEWSADRIGIRVSPIGTF 239 (363)
T ss_dssp HHHHHHHHHHHTTCSEEEEEECTTSHHHHHHCTT-TCCCCSTTSSSHHHHTHHHHHHHHHHHHHSCGGGEEEEECCSSCB
T ss_pred HHHHHHHHHHHhccceeeecccCceeeeeeecCc-ccccccccccchhhhhHhHHHHHhhhhhhcCCCCcceeecccccc
Confidence 8999999999999999999987 677 4699999999999999999999999999985 34778877521
Q ss_pred CC----CccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHH
Q 020423 206 DD----HDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDE 281 (326)
Q Consensus 206 ~~----~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~d 281 (326)
++ ..+.+|.++ +.+.+++.|+|+|+++.+... +. ++. ...+.+..++..++||+++|++ |++.
T Consensus 240 ~~~~~gg~~~~e~~~-~~~~l~~~gvd~i~vs~~~~~--~~--------~~~-~~~~~~~~~~~~~~~vi~~G~~-t~~~ 306 (363)
T d1vyra_ 240 QNVDNGPNEEADALY-LIEELAKRGIAYLHMSETDLA--GG--------KPY-SEAFRQKVRERFHGVIIGAGAY-TAEK 306 (363)
T ss_dssp TTBCCCTTHHHHHHH-HHHHHHHTTCSEEEEECCBTT--BC--------CCC-CHHHHHHHHHHCCSEEEEESSC-CHHH
T ss_pred cchhhcccchHHHHH-HHHHHHhcCCeeeecccCCcc--CC--------ccc-cHHHHHHHHHhcCceEEecCCC-CHHH
Confidence 11 234566665 456678899999999865421 10 111 2333344444458899988855 8999
Q ss_pred HHHHHHhC-CChhhhhHHHHhCCchhHHhHHHhh
Q 020423 282 VNAALRKG-AHHVMVGRAAYQNPWYTLGHVDTAI 314 (326)
Q Consensus 282 a~~~l~~G-aD~V~iGRall~dP~l~~~~i~~~~ 314 (326)
++++++.| ||+|.+||++|+||+ |++++++..
T Consensus 307 ae~~l~~G~~DlV~~gR~liadP~-~~~K~~~g~ 339 (363)
T d1vyra_ 307 AEDLIGKGLIDAVAFGRDYIANPD-LVARLQKKA 339 (363)
T ss_dssp HHHHHHTTSCSEEEESHHHHHCTT-HHHHHHHTC
T ss_pred HHHHHHCCCcceehhhHHHHHCcc-HHHHHHhCC
Confidence 99999988 999999999999999 677777643
|
| >d1gwja_ c.1.4.1 (A:) Morphinone reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Morphinone reductase species: Pseudomonas putida [TaxId: 303]
Probab=100.00 E-value=2.2e-39 Score=307.84 Aligned_cols=247 Identities=12% Similarity=0.080 Sum_probs=184.7
Q ss_pred cccCCccccccCeecCCcEEEccCCC-------CChHHHHHHHHHcCCCcEEEecceeecccc---------ccccchhh
Q 020423 53 IILHTKAEMVARQYLPPWFSVAPMMD-------WTDNHYRTLARLISKHAWLYTEMLAAETII---------YQQGNLDR 116 (326)
Q Consensus 53 ~~~l~~p~~ig~~~l~nrivlAPM~~-------~s~~~~r~~~~~~Gg~gli~te~~~~~~~~---------~~~~~~~~ 116 (326)
.+.||+|++||+++|||||++|||.. .++.++++|.++++ .|++++|.+.+++.. ++++.+..
T Consensus 5 ~P~LF~Pl~Ig~~~lkNRiv~apm~~~~~~dg~~t~~~~~yy~~rA~-gGlii~e~~~V~~~~~~~~~~~~i~~d~~i~~ 83 (374)
T d1gwja_ 5 NPGLFTPLQLGSLSLPNRVIMAPLTRSRTPDSVPGRLQQIYYGQRAS-AGLIISEATNISPTARGYVYTPGIWTDAQEAG 83 (374)
T ss_dssp CCCTTSCEEETTEEESCSEEECCCCCCCCSSSCCCHHHHHHHHHTTT-SSEEEEEEEESSGGGCCBTTCCBCSSHHHHHH
T ss_pred cCCCCCCeeECCEEECCCeEEcccCCCCCCCCCCCHHHHHHHHHHhC-CCEEEEEeEEECCccCCCCCCCccchhhhhhh
Confidence 45899999999999999999999964 47788888876655 489999998887532 22333333
Q ss_pred hhh----cCCCCCcEEEEecCCC-------------------------------------------------------HH
Q 020423 117 FLA----FSPEQHPIVLQIGGSN-------------------------------------------------------LD 137 (326)
Q Consensus 117 ~~~----~~~~~~piivQL~g~~-------------------------------------------------------~~ 137 (326)
+.+ +|+++.++++||+|.. .+
T Consensus 84 ~k~l~~~vh~~G~~i~~QL~H~Gr~~~~~~~~~g~~~~~ps~~~~~~~~~~~~~~~~~~~~~~~~~p~~mt~~eI~~ii~ 163 (374)
T d1gwja_ 84 WKGVVEAVHAKGGRIALQLWHVGRVSHELVQPDGQQPVAPSALKAEGAECFVEFEDGTAGLHPTSTPRALETDGIPGIVE 163 (374)
T ss_dssp HHHHHHHHHHTTCCEEEEEECCTTSCCTTTSGGGCCCEESSSCCCTTCEEEEECTTSCEEEEECCCCEECCGGGHHHHHH
T ss_pred hhhHHHHHhccCcceEeeeeccCcccccccCCCCCceeccccccccCccccccccccccccCCCCCccccCHHHHHHHHH
Confidence 332 7899999999996421 36
Q ss_pred HHHHHHHHHHHCCCCEEEecCC---------CCCCcccCCCCccccccCCHHHHHHHHHHHHhcCC-CcEEEEeccCCCC
Q 020423 138 NLAKATELANAYNYDEINLNCG---------CPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTN-VPVSVKCRIGVDD 207 (326)
Q Consensus 138 ~f~~aA~~a~~aG~d~Iein~g---------~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~-~pv~vK~r~g~~~ 207 (326)
+|+++|++|+++|||+||||++ +|. .|+|+|+|||+++||.||+.||+++||++++ ..+.+++....+.
T Consensus 164 ~f~~AA~rA~~AGfDgVEIH~ahGYLl~qFLSp~-~N~RtDeYGGSlENR~Rf~~EIi~aIR~~vg~~~v~~r~~~~~~~ 242 (374)
T d1gwja_ 164 DYRQAAQRAKRAGFDMVEVHAANACLPNQFLATG-TNRRTDQYGGSIENRARFPLEVVDAVAEVFGPERVGIRLTPFLEL 242 (374)
T ss_dssp HHHHHHHHHHHTTCSEEEEEECTTCHHHHHHSTT-TCCCCSTTSSSHHHHTHHHHHHHHHHHHHHCGGGEEEEECTTCCC
T ss_pred HHHHHHHHHHHhCCCEEEeccchhhhHHHHHHhh-cCccccccccchhhhhhhHHHHHHHHHHHcCCcceeeeeeeeccc
Confidence 8999999999999999999987 577 4699999999999999999999999999985 4455665542211
Q ss_pred C----ccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHH
Q 020423 208 H----DSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVN 283 (326)
Q Consensus 208 ~----~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~ 283 (326)
. ...+.....++..++..|+|+++++........ ...+. . +...+++. +++|||++|+| +++.++
T Consensus 243 ~g~~~~~~~~~~~~~~~~ld~~~i~~~~~~~~~~~~~~------~~~~~-~--~~~~i~~~-~~~pvi~~G~i-~~~~ae 311 (374)
T d1gwja_ 243 FGLTDDEPEAMAFYLAGELDRRGLAYLHFNEPDWIGGD------ITYPE-G--FREQMRQR-FKGGLIYCGNY-DAGRAQ 311 (374)
T ss_dssp TTCCCSCHHHHHHHHHHHHHHHTCSEEEEECSCBTTBC------CCCCT-T--HHHHHHHH-CCSEEEEESSC-CHHHHH
T ss_pred cCCcccchHHHHHHhhccccccCceEEEeccCcccCCC------cchhH-H--HHHHHHHH-cCCCEEEECCc-CHHHHH
Confidence 1 112222233455677889999999865421110 01111 1 22334444 59999999999 799999
Q ss_pred HHHHhC-CChhhhhHHHHhCCchhHHhHHHh
Q 020423 284 AALRKG-AHHVMVGRAAYQNPWYTLGHVDTA 313 (326)
Q Consensus 284 ~~l~~G-aD~V~iGRall~dP~l~~~~i~~~ 313 (326)
++++.| ||+|++||++|+||+ |++++++.
T Consensus 312 ~~l~~g~aDlV~~gR~~iadPd-~~~K~~~G 341 (374)
T d1gwja_ 312 ARLDDNTADAVAFGRPFIANPD-LPERFRLG 341 (374)
T ss_dssp HHHHTTSCSEEEESHHHHHCTT-HHHHHHHT
T ss_pred HHHHcCCCcEehhhHHHHHCcc-HHHHHHcC
Confidence 999977 999999999999999 67777764
|
| >d1oyaa_ c.1.4.1 (A:) Old yellow enzyme (OYE) {Lager yeast (Saccharomyces pastorianus) [TaxId: 27292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Old yellow enzyme (OYE) species: Lager yeast (Saccharomyces pastorianus) [TaxId: 27292]
Probab=100.00 E-value=2.3e-39 Score=310.05 Aligned_cols=254 Identities=10% Similarity=0.024 Sum_probs=177.3
Q ss_pred ccccCCccccccCeecCCcEEEccCCCC--------C--hHHHHHH-HHHcCCCcEEEecceeecccc---------ccc
Q 020423 52 NIILHTKAEMVARQYLPPWFSVAPMMDW--------T--DNHYRTL-ARLISKHAWLYTEMLAAETII---------YQQ 111 (326)
Q Consensus 52 ~~~~l~~p~~ig~~~l~nrivlAPM~~~--------s--~~~~r~~-~~~~Gg~gli~te~~~~~~~~---------~~~ 111 (326)
+.+.||+|++||+++|||||+|+||.+. + +.++++| .|+.||+|||+||.+.+++.. +++
T Consensus 12 ~~~~LFsP~~Ig~~~lkNRiv~apm~~~~a~~~G~~~~~d~~i~yy~~rA~GG~GlIi~e~~~V~~~g~~~~~~~~l~~d 91 (399)
T d1oyaa_ 12 GDTNLFKPIKIGNNELLHRAVIPPLTRMRALHPGNIPNRDWAVEYYTQRAQRPGTMIITEGAFISPQAGGYDNAPGVWSE 91 (399)
T ss_dssp TTSGGGSCEEETTEEESSSEEBCCCCCCCCBTTTTBCCTTTHHHHHHHHTCSTTCEEEEEEEESSGGGCCCTTSCBSSSH
T ss_pred CCCCCCCCeeECCEEecCccEECCccCCcCCCCCCCCCHHHHHHHHHHHHcCCeEEEEeccEEECcccCCCCCCCccCCH
Confidence 3458999999999999999999999752 2 4467777 456799999999998877532 223
Q ss_pred cchhhhhh----cCCCCCcEEEEecCCC--------------------------------------------------HH
Q 020423 112 GNLDRFLA----FSPEQHPIVLQIGGSN--------------------------------------------------LD 137 (326)
Q Consensus 112 ~~~~~~~~----~~~~~~piivQL~g~~--------------------------------------------------~~ 137 (326)
+.+..+.+ +|+++.++++||+|.. .+
T Consensus 92 ~~i~~~k~l~~~vh~~Ga~i~~QL~H~Gr~~~~~~~~~~g~~~~~~s~~~~~~~~~~~~~~~~~~~p~~mt~~eI~~ii~ 171 (399)
T d1oyaa_ 92 EQMVEWTKIFNAIHEKKSFVWVQLWVLGWAAFPDNLARDGLRYDSASDNVFMDAEQEAKAKKANNPQHSLTKDEIKQYIK 171 (399)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEEECCGGGSCHHHHHHTTCCEEESCSSCCSCHHHHHHHHHTTCCEEECCHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHhhccccchhhhhhccccCccccccccccccCccccccCCCCCCcccccCCCCcchhhhHHHHHHHH
Confidence 33333332 7899999999997520 26
Q ss_pred HHHHHHHHHHHCCCCEEEecCC---------CCCCcccCCCCccccccCCHHHHHHHHHHHHhcC-CCcEEEEeccCC--
Q 020423 138 NLAKATELANAYNYDEINLNCG---------CPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCRIGV-- 205 (326)
Q Consensus 138 ~f~~aA~~a~~aG~d~Iein~g---------~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~-~~pv~vK~r~g~-- 205 (326)
+|++||++|+++|||+||||++ +|. +|+|+|+|||+++||.||+.||+++||+++ +.||.+|++...
T Consensus 172 ~f~~AA~rA~~AGfDgVEIH~aHGYLl~qFLSp~-tN~RtDeYGGSlENR~Rf~~Eii~aIR~~vg~~~IgvRls~~d~~ 250 (399)
T d1oyaa_ 172 EYVQAAKNSIAAGADGVEIHSANGYLLNQFLDPH-SNTRTDEYGGSIENRARFTLEVVDALVEAIGHEKVGLRLSPYGVF 250 (399)
T ss_dssp HHHHHHHHHHHTTCSEEEEECCTTSHHHHHHCTT-TCCCCSTTSSSHHHHTHHHHHHHHHHHHHHCGGGEEEEECTTCCT
T ss_pred HHHHHHHHHHHhCCceEehhhhHHHHHHHhhccc-ccccccccCcchhhhhHHHHHHHHhhhheeeccCceEEechhhcc
Confidence 8999999999999999999986 677 469999999999999999999999999998 357888887531
Q ss_pred CC------CccHHHHHHHHHHHhhhC-----CccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeC
Q 020423 206 DD------HDSYNQLCDFIYKVSSLS-----PTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNG 274 (326)
Q Consensus 206 ~~------~~~~~e~~~~ia~~le~~-----Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~G 274 (326)
++ .....+..+ ++..++.. ..+++++................. ... ..+.+++.+++|||++|
T Consensus 251 ~~~~~~~~~~~~~~~~~-~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~----~~~~ik~~~~~PVi~~G 324 (399)
T d1oyaa_ 251 NSMSGGAETGIVAQYAY-VAGELEKRAKAGKRLAFVHLVEPRVTNPFLTEGEGEY-EGG----SNDFVYSIWKGPVIRAG 324 (399)
T ss_dssp TTCCGGGSTTHHHHHHH-HHHHHHHHHHTTCCCSEEEEECTTCSCTTSCTTSSCC-CSC----CTTHHHHHCCSCEEEES
T ss_pred cccCCccccchHHHHHH-HHHHHHHhccccccccceeeecccCCCcccccccccc-chh----HHHHHHHHhCCCEEEEC
Confidence 11 111223222 23333322 255666554332111110000000 011 11223444599999999
Q ss_pred CCCCHHHHHHHHH-hCCChhhhhHHHHhCCchhHHhHHHh
Q 020423 275 GINTVDEVNAALR-KGAHHVMVGRAAYQNPWYTLGHVDTA 313 (326)
Q Consensus 275 gI~s~~da~~~l~-~GaD~V~iGRall~dP~l~~~~i~~~ 313 (326)
+|.+.+++.+.+. .+||+|.+||++|+||+ |++++.+.
T Consensus 325 ~i~~~~~~~~~i~~~~aDlV~~gR~liaDP~-l~~K~~~G 363 (399)
T d1oyaa_ 325 NFALHPEVVREEVKDKRTLIGYGRFFISNPD-LVDRLEKG 363 (399)
T ss_dssp SCTTCHHHHHHHTTSTTEEEECCHHHHHCTT-HHHHHHHT
T ss_pred CCCChHHHHHHHHcCCCeEhHHHHHHHHCcc-HHHHHHcC
Confidence 9987766655555 66999999999999999 67777763
|
| >d1icpa_ c.1.4.1 (A:) 12-oxophytodienoate reductase (OPR, OYE homolog) {Tomato (Lycopersicon esculentum), OPR1 [TaxId: 4081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: 12-oxophytodienoate reductase (OPR, OYE homolog) species: Tomato (Lycopersicon esculentum), OPR1 [TaxId: 4081]
Probab=100.00 E-value=2.5e-37 Score=292.71 Aligned_cols=244 Identities=13% Similarity=0.061 Sum_probs=176.7
Q ss_pred CCccccccCeecCCcEEEccCCC-------CChHHHHHHHH-HcCCCcEEEecceeecccc---------ccccchhhhh
Q 020423 56 HTKAEMVARQYLPPWFSVAPMMD-------WTDNHYRTLAR-LISKHAWLYTEMLAAETII---------YQQGNLDRFL 118 (326)
Q Consensus 56 l~~p~~ig~~~l~nrivlAPM~~-------~s~~~~r~~~~-~~Gg~gli~te~~~~~~~~---------~~~~~~~~~~ 118 (326)
||+|++||+++||||+++|||.. .++.++.+|.+ +.|| |+|+||.+.++... ++++.+..+.
T Consensus 7 LFsP~~ig~~~LkNRiv~apm~~~~a~~g~p~~~~~~~y~~rA~gG-gliite~~~V~~~g~~~~~~~~l~~d~~i~~~k 85 (364)
T d1icpa_ 7 LMSPCKMGKFELCHRVVLAPLTRQRSYGYIPQPHAILHYSQRSTNG-GLLIGEATVISETGIGYKDVPGIWTKEQVEAWK 85 (364)
T ss_dssp GGSCEEETTEEESCSEEECCCCCCCCGGGSCCHHHHHHHHHTCCTT-CEEECCCEECSGGGCCSTTCCBCSSHHHHHHHH
T ss_pred CCCCceECCEEeCCccEecccCCCcCCCCCCCHHHHHHHHHHHhCc-eEEEEccEEECCcccCCCCCceechhhhhhhHH
Confidence 89999999999999999999964 46778888855 4555 99999998776432 2223333333
Q ss_pred h----cCCCCCcEEEEecCCC--------------------------------------------------HHHHHHHHH
Q 020423 119 A----FSPEQHPIVLQIGGSN--------------------------------------------------LDNLAKATE 144 (326)
Q Consensus 119 ~----~~~~~~piivQL~g~~--------------------------------------------------~~~f~~aA~ 144 (326)
+ +|+++.++++||+|.. .++|+++|+
T Consensus 86 ~l~~~ih~~g~~~~~QL~H~Gr~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~mt~~eI~~ii~~f~~aA~ 165 (364)
T d1icpa_ 86 PIVDAVHAKGGIFFCQIWHVGRVSNKDFQPNGEDPISCTDRGLTPQIMSNGIDIAHFTRPRRLTTDEIPQIVNEFRVAAR 165 (364)
T ss_dssp HHHHHHHHTTCEEEEEEECCTTSSCTTTSGGGCCCEESSSCCCCCEECTTSSCEECCCCCEECCTTTHHHHHHHHHHHHH
T ss_pred HHHHHhhcCCCceEEeeccCCcccccccccCCCCCccccccccccccccccccccCCCCCcccchhHHHHHHHHHHHHHH
Confidence 2 7889999999997421 378999999
Q ss_pred HHHHCCCCEEEecCC---------CCCCcccCCCCccccccCCHHHHHHHHHHHHhcCC-CcEEEEeccCCCCC---ccH
Q 020423 145 LANAYNYDEINLNCG---------CPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTN-VPVSVKCRIGVDDH---DSY 211 (326)
Q Consensus 145 ~a~~aG~d~Iein~g---------~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~-~pv~vK~r~g~~~~---~~~ 211 (326)
+|+++|||+||||++ +|. +|+|+|+|||+++||.||+.||+++||+.++ .++.++++...+.. .+.
T Consensus 166 rA~~AGfDgVeIH~ahGyLl~QFlSp~-tN~RtDeYGGsleNR~Rf~~Eii~aIr~~~g~~~i~~r~s~~~~~~~~g~~~ 244 (364)
T d1icpa_ 166 NAIEAGFDGVEIHGAHGYLIDQFMKDQ-VNDRSDKYGGSLENRCRFALEIVEAVANEIGSDRVGIRISPFAHYNEAGDTN 244 (364)
T ss_dssp HHHHTTCSEEEEEECTTSHHHHHHCTT-TCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGGGEEEEECTTCCTTTCCCSC
T ss_pred HHHHhCCCeEEEeccCcchhhceehhh-cCCcCccccchhhhhhhHHHHHhhhhhcccCCcceeEEecccccccCCcCcc
Confidence 999999999999986 577 5799999999999999999999999999984 46777776532211 111
Q ss_pred --HHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhC
Q 020423 212 --NQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKG 289 (326)
Q Consensus 212 --~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~G 289 (326)
...+. ..+.++..+++++++............ . ..+....+++.. +.|||++|++ ++++++++++.|
T Consensus 245 ~~~~~l~-~~~~~~~~d~~~~~~~~~~~~~~~~~~----~----~~~~~~~i~~~~-~~~vi~~g~~-~~~~ae~~l~~g 313 (364)
T d1icpa_ 245 PTALGLY-MVESLNKYDLAYCHVVEPRMKTAWEKI----E----CTESLVPMRKAY-KGTFIVAGGY-DREDGNRALIED 313 (364)
T ss_dssp HHHHHHH-HHHHHGGGCCSEEEEECCSCCC--------------CCCCSHHHHHHC-CSCEEEESSC-CHHHHHHHHHTT
T ss_pred hHHHHHH-HHHHhhccceeeeeeecCccccccccc----c----cHHHHHHHHHhc-CCCEEEECCC-CHHHHHHHHHcC
Confidence 11122 233445667777777654321111000 0 011123444454 8899999986 789999999965
Q ss_pred -CChhhhhHHHHhCCchhHHhHHHh
Q 020423 290 -AHHVMVGRAAYQNPWYTLGHVDTA 313 (326)
Q Consensus 290 -aD~V~iGRall~dP~l~~~~i~~~ 313 (326)
||+|++||++++||+ |++++++.
T Consensus 314 ~aD~V~~gR~~iadPd-~~~k~~~g 337 (364)
T d1icpa_ 314 RADLVAYGRLFISNPD-LPKRFELN 337 (364)
T ss_dssp SCSEEEESHHHHHCTT-HHHHHHHT
T ss_pred CCceehhHHHHHHCcc-HHHHHHcC
Confidence 999999999999999 68887764
|
| >d1q45a_ c.1.4.1 (A:) 12-oxophytodienoate reductase (OPR, OYE homolog) {Thale cress (Arabidopsis thaliana), OPR3 [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: 12-oxophytodienoate reductase (OPR, OYE homolog) species: Thale cress (Arabidopsis thaliana), OPR3 [TaxId: 3702]
Probab=100.00 E-value=4e-37 Score=293.04 Aligned_cols=253 Identities=15% Similarity=0.109 Sum_probs=177.1
Q ss_pred ccCCccccccCeecCCcEEEccCCC-------CChHHHHHHHH-HcCCCcEEEecceeecccc---------ccccchhh
Q 020423 54 ILHTKAEMVARQYLPPWFSVAPMMD-------WTDNHYRTLAR-LISKHAWLYTEMLAAETII---------YQQGNLDR 116 (326)
Q Consensus 54 ~~l~~p~~ig~~~l~nrivlAPM~~-------~s~~~~r~~~~-~~Gg~gli~te~~~~~~~~---------~~~~~~~~ 116 (326)
..||+|++||+++|||||+++||.+ .++.++++|.+ +.|| |+|+||.+.+++.. ++++.++.
T Consensus 3 ~~LF~P~~ig~~~lkNRiv~~pm~~~~~~~G~p~~~~~~~y~~rA~Gg-glii~~~~~V~~~~~~~~~~~~~~~d~~i~~ 81 (380)
T d1q45a_ 3 ETLFSSYKMGRFDLSHRVVLAPMTRCRALNGVPNAALAEYYAQRTTPG-GFLISEGTMVSPGSAGFPHVPGIYSDEQVEA 81 (380)
T ss_dssp CCTTSCEEETTEEESCSEEECCCCCCCSGGGCCCHHHHHHHHHTCCTT-CEEEEEEEESSTTCCCSTTCCBCSSHHHHHH
T ss_pred cccCCCccCCCEEecCCeEEcccCCCcCCCCCCCHHHHHHHHHHHhCC-EEEEEcceEECCCcCCCCCCcccCCHHHHHH
Confidence 4699999999999999999999964 57888888855 4666 99999998776432 23333333
Q ss_pred hhh----cCCCCCcEEEEecCCC-----------------------------------------------------HHHH
Q 020423 117 FLA----FSPEQHPIVLQIGGSN-----------------------------------------------------LDNL 139 (326)
Q Consensus 117 ~~~----~~~~~~piivQL~g~~-----------------------------------------------------~~~f 139 (326)
+.+ +|+++.++++||+|.. .++|
T Consensus 82 ~k~l~~~vh~~g~~~~~QL~H~Gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pr~mt~~eI~~ii~~f 161 (380)
T d1q45a_ 82 WKQVVEAVHAKGGFIFCQLWHVGRASHAVYQPNGGSPISSTNKPISENRWRVLLPDGSHVKYPKPRALEASEIPRVVEDY 161 (380)
T ss_dssp HHHHHHHHHHTTCEEEEEEECCTTSCCGGGSGGGCCCEESSSCCCCTTTCCEECTTSCEECCCCCEECCGGGHHHHHHHH
T ss_pred HHHHHHHHHhcCcceEEEeeeCCccccccccccCCCCcccccCccccCCceeecCCccccCCCCCeeCCHHHHHHHHHHH
Confidence 332 7899999999996410 3789
Q ss_pred HHHHHHHHHCCCCEEEecCC---------CCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCC-cEEEEeccCCCC--
Q 020423 140 AKATELANAYNYDEINLNCG---------CPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNV-PVSVKCRIGVDD-- 207 (326)
Q Consensus 140 ~~aA~~a~~aG~d~Iein~g---------~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~-pv~vK~r~g~~~-- 207 (326)
+++|++|+++|||+||||++ +|. .|+|+|+|||+++||.||+.||+++||++++. .+.++.....+.
T Consensus 162 ~~aA~~A~~aGfDgVEIh~ahGyLl~qFlSp~-~N~RtDeYGGs~enR~Rf~lEii~aIr~~vg~~~~~~~~~~~~d~~~ 240 (380)
T d1q45a_ 162 CLSALNAIRAGFDGIEIHGAHGYLIDQFLKDG-INDRTDQYGGSIANRCRFLKQVVEGVVSAIGASKVGVRVSPAIDHLD 240 (380)
T ss_dssp HHHHHHHHHHTCSEEEEEECTTSHHHHHHCTT-TCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGGGEEEEECTTCCGGG
T ss_pred HHHHHHHHHhCcceeeeccchhhhHhhhhccc-cccCccccCccccchhhhHHHHHHHHHHHccccCceEEEeecccccc
Confidence 99999999999999999976 677 46999999999999999999999999999853 333443322111
Q ss_pred ---CccH------HHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCC
Q 020423 208 ---HDSY------NQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT 278 (326)
Q Consensus 208 ---~~~~------~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s 278 (326)
.... .+.++ ....+...++|+++++.......+... .....+...+..+.+..|..+++||+++||+ +
T Consensus 241 ~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~s~~~~~~~~~~~-~~~~~~~~~~~~~~~~ik~~~~~pv~~~Gg~-~ 317 (380)
T d1q45a_ 241 ATDSDPLSLGLAVVGMLN-KLQGVNGSKLAYLHVTQPRYHAYGQTE-SGRQGSDEEEAKLMKSLRMAYNGTFMSSGGF-N 317 (380)
T ss_dssp CCCSCHHHHHHHHHHHHH-HHHHTTSSCCSEEEEECCC----------------CHHHHHHHHHHHHSCSCEEEESSC-C
T ss_pred cccccchhhhhhhhhhhh-HhhhhccccceeEEeccCccccccccc-ccccCchhhhHHHHHHHhhccCCcEEeCCCC-C
Confidence 1111 11122 123345678999999865421111100 0001111112223333344458999999998 6
Q ss_pred HHHHHHHHHhC-CChhhhhHHHHhCCchhHHhHHH
Q 020423 279 VDEVNAALRKG-AHHVMVGRAAYQNPWYTLGHVDT 312 (326)
Q Consensus 279 ~~da~~~l~~G-aD~V~iGRall~dP~l~~~~i~~ 312 (326)
++.++++++.| ||+|.+||++|+||+ |.++++.
T Consensus 318 ~~~ae~~l~~G~~DlV~~gR~liaDPd-lv~K~~~ 351 (380)
T d1q45a_ 318 KELGMQAVQQGDADLVSYGRLFIANPD-LVSRFKI 351 (380)
T ss_dssp HHHHHHHHHTTSCSEEEESHHHHHCTT-HHHHHHT
T ss_pred HHHHHHHHHcCCccchhhhHHHHHCcc-HHHHHhc
Confidence 99999999977 999999999999999 6777665
|
| >d1ep3a_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus lactis, isozyme B [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Lactococcus lactis, isozyme B [TaxId: 1358]
Probab=99.93 E-value=2.4e-26 Score=212.06 Aligned_cols=240 Identities=18% Similarity=0.205 Sum_probs=169.7
Q ss_pred ccccCeecCCcEEEccCCCCChHHHHHHHHHcCCCcEEEecceeecccc-------------------ccccchhhhh--
Q 020423 60 EMVARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETII-------------------YQQGNLDRFL-- 118 (326)
Q Consensus 60 ~~ig~~~l~nrivlAPM~~~s~~~~r~~~~~~Gg~gli~te~~~~~~~~-------------------~~~~~~~~~~-- 118 (326)
.+++|++|+|||++|.....++..+..+.. ..|+|.+.++.+..++.. ..+...+.++
T Consensus 9 ~~~~Gl~l~nPi~~aAG~~~~~~~~~~~~~-~~g~G~v~~~ti~~~~~~gn~~pr~~~~~~~~~n~~g~~~~g~~~~~~~ 87 (311)
T d1ep3a_ 9 VKLPGLDLKNPIIPASGCFGFGEEYAKYYD-LNKLGSIMVKATTLHPRFGNPTPRVAETASGMLNAIGLQNPGLEVIMTE 87 (311)
T ss_dssp EEETTEEESSSEEECTTSSTTSTTGGGTSC-GGGSSCEEEEEECSSCBCCCCSCCEEEETTEEEECCCCCBCCHHHHHHT
T ss_pred EEECCEEcCCCcEECCCCCCCCHHHHHhhh-hcCccEEEEeeEcccccCCCCCCeEeeecccccccccccchhHHHHhhh
Confidence 688999999999999532222333332222 245788888776544311 0111111111
Q ss_pred -----hcCCCCCcEEEEecCCCHHHHHHHHHHHHH-CCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhc
Q 020423 119 -----AFSPEQHPIVLQIGGSNLDNLAKATELANA-YNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAAN 192 (326)
Q Consensus 119 -----~~~~~~~piivQL~g~~~~~f~~aA~~a~~-aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~ 192 (326)
+.+..+.|+++|+.+..++++.++++.+.+ +|+|+||+|++||+.. . .+.....+++.+.++++++++.
T Consensus 88 ~~~~~~~~~~~~pii~si~~~~~~~~~~~~~~~~~~~g~d~ielN~~cP~~~-~----~~~~~~~~~~~~~~~~~~v~~~ 162 (311)
T d1ep3a_ 88 KLPWLNENFPELPIIANVAGSEEADYVAVCAKIGDAANVKAIELNISCPNVK-H----GGQAFGTDPEVAAALVKACKAV 162 (311)
T ss_dssp HHHHHHHHCTTSCEEEEECCSSHHHHHHHHHHHTTSTTEEEEEEECCSEEGG-G----TTEEGGGCHHHHHHHHHHHHHH
T ss_pred hhhhhhcccCCCcccccccchhhhHHHHHHHHHhhcccccccccccCCCccc-c----cccccccCHHHHHHHHHHHHhc
Confidence 123457899999999999999999887755 6999999999999743 1 1444558899999999999999
Q ss_pred CCCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCccc------------CCCCcCCcCCCCCccHHHHHH
Q 020423 193 TNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALL------------NGISPAENRTIPPLKYEYYYA 260 (326)
Q Consensus 193 ~~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~------------~g~~~~~~~~~~~~~~~~i~~ 260 (326)
.+.|+.+|++.++.+.. + +++.++++|+|.++++.+.... .+..+..++.+.+..++.+++
T Consensus 163 ~~~p~~vkl~~~~~~~~---~----~a~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~sG~~i~~~~l~~i~~ 235 (311)
T d1ep3a_ 163 SKVPLYVKLSPNVTDIV---P----IAKAVEAAGADGLTMINTLMGVRFDLKTRQPILANITGGLSGPAIKPVALKLIHQ 235 (311)
T ss_dssp CSSCEEEEECSCSSCSH---H----HHHHHHHTTCSEEEECCCEEECCBCTTTCSBSSTTSCEEEESGGGHHHHHHHHHH
T ss_pred cCCCeeeeecccccchH---H----HHHHHHHhhhheeEEEeeccccccccccccccccccCCCCCCCcccchhHHHHHH
Confidence 99999999999876532 2 3445567999999997653210 000111122334556788888
Q ss_pred HHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhCCchhHHhHHHhh
Q 020423 261 LLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAI 314 (326)
Q Consensus 261 i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~dP~l~~~~i~~~~ 314 (326)
++++. ++|||++|||.|++|+.+++..|||+||+||+++.+||++ .++.+.+
T Consensus 236 i~~~~-~ipIig~GGI~s~~Da~~~i~~GAd~V~ig~~~~~~P~i~-~~I~~~L 287 (311)
T d1ep3a_ 236 VAQDV-DIPIIGMGGVANAQDVLEMYMAGASAVAVGTANFADPFVC-PKIIDKL 287 (311)
T ss_dssp HHTTC-SSCEEECSSCCSHHHHHHHHHHTCSEEEECTHHHHCTTHH-HHHHHHH
T ss_pred Hhhhc-ceeEEEeCCcCCHHHHHHHHHcCCCEEEecHHHHcCChHH-HHHHHHH
Confidence 87765 9999999999999999999999999999999999999964 4444433
|
| >d1gtea2 c.1.4.1 (A:533-844) Dihydropyrimidine dehydrogenase, domain 4 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydropyrimidine dehydrogenase, domain 4 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.93 E-value=3.8e-25 Score=204.39 Aligned_cols=240 Identities=18% Similarity=0.183 Sum_probs=167.3
Q ss_pred ccccCeecCCcEEEccCCCCChHHHHHHHHHcCCCcEEEecceeeccccccc----------------------------
Q 020423 60 EMVARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQ---------------------------- 111 (326)
Q Consensus 60 ~~ig~~~l~nrivlAPM~~~s~~~~r~~~~~~Gg~gli~te~~~~~~~~~~~---------------------------- 111 (326)
.++.|++++||+++|+...-.+..+.......| +|.+.++.++.++....+
T Consensus 3 v~~~Gl~l~nPi~~Asg~~~~~~~~~~~~~~~G-~G~vv~ktvt~~~~~~~n~~pr~~~~~~~~~~~~~~~~~~~n~~g~ 81 (312)
T d1gtea2 3 VEMAGLKFINPFGLASAAPTTSSSMIRRAFEAG-WGFALTKTFSLDKDIVTNVSPRIVRGTTSGPMYGPGQSSFLNIELI 81 (312)
T ss_dssp EEETTEEESSSEEECSSGGGSSHHHHHHHHHHT-CSEEECCCBCCGGGCCCCCSSCEEECCTTCSCCSSCCSCEEECCCS
T ss_pred EEECCEEcCCCcEECCcCCCCCHHHHHHHHHcC-CcEEEEeeecCCccccCCCCCcEEeccCCccccccccccccccccc
Confidence 578899999999999863334444333333344 899998877543211000
Q ss_pred --cchhhhhh-------cCCCCCcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHH
Q 020423 112 --GNLDRFLA-------FSPEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFV 182 (326)
Q Consensus 112 --~~~~~~~~-------~~~~~~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l 182 (326)
...+.+++ ..+...+++.+..+.+.++|.+.++.+.++|+|++|+|++||+....+ + +|..+..+++.+
T Consensus 82 ~~~g~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~~~~~~gad~lelN~scPn~~~~~-~-~~~~~~~~~~~~ 159 (312)
T d1gtea2 82 SEKTAAYWCQSVTELKADFPDNIVIASIMCSYNKNDWMELSRKAEASGADALELNLSCPHGMGER-G-MGLACGQDPELV 159 (312)
T ss_dssp CSSCHHHHHHHHHHHHHHCTTSEEEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECCCBCCCC-------SBGGGCHHHH
T ss_pred cccchhhhhhhhccccccccccccccccccccchhHHHHHHHHhccCCCCeEeeccCCCCccccc-c-cchhhhhhHHHH
Confidence 00111111 112333444555678899999999999999999999999999864333 3 577778899999
Q ss_pred HHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCccc---------------------CC
Q 020423 183 GEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALL---------------------NG 241 (326)
Q Consensus 183 ~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~---------------------~g 241 (326)
.++++++|+.++.|+.+|+++..++ ..+ +++.++++|+|.++++++.... +|
T Consensus 160 ~~i~~~v~~~~~~pv~vKl~~~~~~---~~~----i~~~~~~~g~~gi~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~gg 232 (312)
T d1gtea2 160 RNICRWVRQAVQIPFFAKLTPNVTD---IVS----IARAAKEGGADGVTATNTVSGLMGLKADGTPWPAVGAGKRTTYGG 232 (312)
T ss_dssp HHHHHHHHHHCSSCEEEEECSCSSC---HHH----HHHHHHHHTCSEEEECCCEEECCCBCTTSCBSSCBTTTTBBCCEE
T ss_pred HHHHHHHhhccCCceeecccccchh---HHH----HHHHHHHhcccceEEEeeccccccccccccccccccccccccccc
Confidence 9999999999999999999986543 233 3445667899999987652100 11
Q ss_pred CCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhC-CchhHHhHHHh
Q 020423 242 ISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN-PWYTLGHVDTA 313 (326)
Q Consensus 242 ~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~d-P~l~~~~i~~~ 313 (326)
.++ +.+.+..++.++++++..+++|||++|||.|++|+.+++..|||+|||||+++.+ |. +.+++.+.
T Consensus 233 ~sG---~~i~~~al~~v~~~~~~~~~ipIi~~GGI~~~~d~~~~l~aGA~~Vqv~ta~~~~G~~-~i~~i~~~ 301 (312)
T d1gtea2 233 VSG---TAIRPIALRAVTTIARALPGFPILATGGIDSAESGLQFLHSGASVLQVCSAVQNQDFT-VIQDYCTG 301 (312)
T ss_dssp EES---GGGHHHHHHHHHHHHHHSTTCCEEEESSCCSHHHHHHHHHTTCSEEEESHHHHTSCTT-HHHHHHHH
T ss_pred ccC---cCcchhhHHHHHHHHHHcCCCcEEEEcCCCCHHHHHHHHHcCCCeeEECHhhhccChH-HHHHHHHH
Confidence 111 2233444677888888777899999999999999999999999999999999987 66 55555443
|
| >d1juba_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus lactis, isozyme A [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Lactococcus lactis, isozyme A [TaxId: 1358]
Probab=99.86 E-value=1.4e-20 Score=173.24 Aligned_cols=239 Identities=16% Similarity=0.151 Sum_probs=163.0
Q ss_pred ccccCeecCCcEEEccCCCCCh-HHHHHHHHHcCCCcEEEecceeecccc-------------------ccccchhhhh-
Q 020423 60 EMVARQYLPPWFSVAPMMDWTD-NHYRTLARLISKHAWLYTEMLAAETII-------------------YQQGNLDRFL- 118 (326)
Q Consensus 60 ~~ig~~~l~nrivlAPM~~~s~-~~~r~~~~~~Gg~gli~te~~~~~~~~-------------------~~~~~~~~~~- 118 (326)
.++.|++++||+++|......+ ...+.+. .. |+|.+.+..+..++.. ..+...+.++
T Consensus 4 ~~~~Gl~l~nPi~~aag~~~~~~~~~~~~~-~~-G~G~vv~ktit~~~~~gn~~pr~~~~~~~~~n~~G~~n~g~~~~~~ 81 (311)
T d1juba_ 4 TTFANAKFANPFMNASGVHCMTIEDLEELK-AS-QAGAYITKSSTLEKREGNPLPRYVDLELGSINSMGLPNLGFDYYLD 81 (311)
T ss_dssp EEETTEEESSSEEECTTSSCSSHHHHHHHH-HS-SCSCCBCCCBCSSCBCCSCSCCEEEETTEEEECCCCCBSCHHHHHH
T ss_pred EEECCEecCCCCEECCCCCCCCHHHHHHHH-HC-CCcEEEEEEEeeccccCCCCCeEEEccccchhhhhhcCchhHHHHH
Confidence 4788999999999996544334 4444443 34 4888877766554321 0111111111
Q ss_pred ------hcCCCCCcEEEEecCCCHHHHHHHHHHHHHCC-CCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHh
Q 020423 119 ------AFSPEQHPIVLQIGGSNLDNLAKATELANAYN-YDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAA 191 (326)
Q Consensus 119 ------~~~~~~~piivQL~g~~~~~f~~aA~~a~~aG-~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~ 191 (326)
+-...+.|+++++.+.+.+++...++...+++ +|.+|||++||+....+ .+..+++.+.++++++++
T Consensus 82 ~~~~~~~~~~~~~pvi~si~~~~~~~~~~~~~~~~~~~~ad~ielNiscPn~~~~~------~~~~~~~~~~~~~~~v~~ 155 (311)
T d1juba_ 82 YVLKNQKENAQEGPIFFSIAGMSAAENIAMLKKIQESDFSGITELNLSCPNVPGEP------QLAYDFEATEKLLKEVFT 155 (311)
T ss_dssp HHHHHHHHTCSSSCCEEEECCSSHHHHHHHHHHHHHSCCCSEEEEESCCCCSSSCC------CGGGCHHHHHHHHHHHTT
T ss_pred HHHHhhhhcccCCCceeeccccccchhHHHHHHHhhccccceeeeccccccccccc------cccccHHHHHHHHHHhhc
Confidence 12345679999999999999999999888887 79999999999864322 233789999999999999
Q ss_pred cCCCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCc---------------ccCCCCcCCcCCCCCccHH
Q 020423 192 NTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKA---------------LLNGISPAENRTIPPLKYE 256 (326)
Q Consensus 192 ~~~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~---------------~~~g~~~~~~~~~~~~~~~ 256 (326)
.++.|+.+|+.+..+. .+++ .+++.+.+.|++.++...... ...+.++..+..+.+....
T Consensus 156 ~~~~pv~vKl~p~~~~-~~~~----~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~sg~~l~~~al~ 230 (311)
T d1juba_ 156 FFTKPLGVKLPPYFDL-VHFD----IMAEILNQFPLTYVNSVNSIGNGLFIDPEAESVVIKPKDGFGGIGGAYIKPTALA 230 (311)
T ss_dssp TCCSCEEEEECCCCSH-HHHH----HHHHHHTTSCCCEEEECCCEEEEECEETTTTEESCSGGGGEEEEESGGGHHHHHH
T ss_pred ccccceeecccccchh-hHHH----HHHHHHHhhccceEeccccccccccccccccccccccccccCCccccccCchHHH
Confidence 9999999999986532 1222 244556678999887643211 0001111111222233345
Q ss_pred HHHHHHhcC-CCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhC-CchhHHhHHH
Q 020423 257 YYYALLRDF-PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN-PWYTLGHVDT 312 (326)
Q Consensus 257 ~i~~i~~~~-~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~d-P~l~~~~i~~ 312 (326)
.+.++.+.. +++|||++|||.|++|+.+++..|||+||++++++.+ |++ .+++.+
T Consensus 231 ~i~~i~~~~~~~~~Iig~GGI~s~~Da~~~i~aGA~~Vql~tal~~~Gp~~-i~~i~~ 287 (311)
T d1juba_ 231 NVRAFYTRLKPEIQIIGTGGIETGQDAFEHLLCGATMLQIGTALHKEGPAI-FDRIIK 287 (311)
T ss_dssp HHHHHHTTSCTTSEEEEESSCCSHHHHHHHHHHTCSEEEECHHHHHHCTHH-HHHHHH
T ss_pred HHHHHHHhcCCCeeEEecCCcCCHHHHHHHHHcCCCceeeeHhhHhcChHH-HHHHHH
Confidence 666666654 4799999999999999999999999999999998755 885 444443
|
| >d2b4ga1 c.1.4.1 (A:2-313) Dihydroorotate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Trypanosoma brucei [TaxId: 5691]
Probab=99.83 E-value=1.4e-19 Score=166.58 Aligned_cols=237 Identities=15% Similarity=0.177 Sum_probs=157.1
Q ss_pred ccccCeecCCcEEEccC-CCCChHHHHHHHHHcCCCcEEEecceeecccc-------------------ccccchhhhhh
Q 020423 60 EMVARQYLPPWFSVAPM-MDWTDNHYRTLARLISKHAWLYTEMLAAETII-------------------YQQGNLDRFLA 119 (326)
Q Consensus 60 ~~ig~~~l~nrivlAPM-~~~s~~~~r~~~~~~Gg~gli~te~~~~~~~~-------------------~~~~~~~~~~~ 119 (326)
.++.|++++||+++|.= .+-+...++.+.. .|+|.+.+..+..++.. ..+...+.+++
T Consensus 4 v~~~Gl~l~nPi~~aaG~~~~~~~~~~~~~~--~g~g~vv~ktit~~p~~gnp~Pr~~~~~~~~~N~~G~~n~G~~~~~~ 81 (312)
T d2b4ga1 4 VNILGHEFSNPFMNAAGVLCTTEEDLRRMTE--SESGSLIGKSCTLAPRTGNPEPRYFGLPLGSINSMGLPNLGVDFYLS 81 (312)
T ss_dssp EEETTEEESSSEEECTTSSCSSHHHHHHHHH--SSCSCEEEEEECSSCBCCSCSCCEEEETTEEEECCCCCBSCHHHHHH
T ss_pred EEECCEECCCCcEeCcCCCCCCHHHHHHHHH--cCCCEEEeCcccccCCCCCCCCeEEecCchheeccccCcchHHHHHH
Confidence 57889999999999842 2334445555433 35888888766554321 01111222221
Q ss_pred ----cC-CCCCcEEEEecCCCHHHHHHHHHHH---HHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHh
Q 020423 120 ----FS-PEQHPIVLQIGGSNLDNLAKATELA---NAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAA 191 (326)
Q Consensus 120 ----~~-~~~~piivQL~g~~~~~f~~aA~~a---~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~ 191 (326)
.+ ..+.|+++++.+...+++.+.++.+ .++++|++|||.+||+.... ..+..+++.+.++++++++
T Consensus 82 ~l~~~~~~~~~pii~si~g~~~~~~~~~~~~~~~~~~~~ad~iElNiScPn~~~~------~~~~~~~~~~~~i~~~v~~ 155 (312)
T d2b4ga1 82 YAAQTHDYSRKPLFLSMSGLSVEESVEMVKKLVPITKEKGTILELNLSCPNVPGK------PQVGYDFDTTRTYLQKVSE 155 (312)
T ss_dssp HHHHTCCTTTCCEEEEECCSSHHHHHHHHHHHHHHHHHHCCEEEEECCCCCSTTC------CCGGGCHHHHHHHHHHHHH
T ss_pred HHHHhhhccccceeccccccccccHHHHHHHHHHhhhhcccceeeccccCCcCcc------hhhhccHHHHHHHHHHhhc
Confidence 22 2467999999999888877777654 44678999999999986422 2233779999999999999
Q ss_pred cCCCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCC----------c--------ccCCCCcCCcCCCCCc
Q 020423 192 NTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRK----------A--------LLNGISPAENRTIPPL 253 (326)
Q Consensus 192 ~~~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~----------~--------~~~g~~~~~~~~~~~~ 253 (326)
.++.|+.+|+.+..+. ..++.. .+...+..+++.+...... . ..+|+++ +.+.+.
T Consensus 156 ~~~~pi~vKl~p~~~~-~~~~~~---~~~~~~~~~~~~i~~~nt~~~~~~~~~~~~~~~~~~~~~~GGlSG---~~l~~~ 228 (312)
T d2b4ga1 156 AYGLPFGVKMPPYFDI-AHFDMA---AAVLNDFPLVKFITCVNSIGNGLVIDPANETVVIKPKQGFGGLGG---KYVLPT 228 (312)
T ss_dssp HHCSCEEEEECCCCCH-HHHHHH---HHHHTTCTTEEEEEECCCEEEEECEETTTTEESCCGGGGEEEEEE---GGGHHH
T ss_pred cccccceeccccccch-hHHHHH---HHHHHhhhhhhhhhhcccccccccccccCCCccccccccccCccc---ccccch
Confidence 9999999999985432 122221 2233344455555432110 0 1123333 223344
Q ss_pred cHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHh-CCchhHHhHHH
Q 020423 254 KYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ-NPWYTLGHVDT 312 (326)
Q Consensus 254 ~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~-dP~l~~~~i~~ 312 (326)
..+.++++.+..++.|||++|||.|++|+.+++..|||+||++++++. .|.+ .+++.+
T Consensus 229 al~~v~~~~~~~~~~~Iig~GGI~s~~Da~e~i~aGAs~Vqv~Tal~~~Gp~~-i~~i~~ 287 (312)
T d2b4ga1 229 ALANVNAFFRRCPDKLVFGCGGVYSGEEAFLHILAGASMVQVGTALHDEGPII-FARLNK 287 (312)
T ss_dssp HHHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHHHTEEEEEESHHHHHHCTTH-HHHHHH
T ss_pred hhHHHHHHHHHcCCCceeecCCcCCHHHHHHHHHcCCChheeehhhHhcCcHH-HHHHHH
Confidence 466777888877788999999999999999999999999999999865 5985 444443
|
| >d1f76a_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=99.78 E-value=5.3e-18 Score=157.55 Aligned_cols=236 Identities=15% Similarity=0.126 Sum_probs=149.8
Q ss_pred ccccccCeecCCcEEEccCCCCChHHHHHHHHHcCCCcEEEecceeecccccc---------------------ccchhh
Q 020423 58 KAEMVARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQ---------------------QGNLDR 116 (326)
Q Consensus 58 ~p~~ig~~~l~nrivlAPM~~~s~~~~r~~~~~~Gg~gli~te~~~~~~~~~~---------------------~~~~~~ 116 (326)
.+.++.|++++||+++|.=..-+...++.+. . .|+|.+.+..+..++..-. +...+.
T Consensus 45 L~v~~~Gl~~~NPiglAsG~~~~~e~i~~~~-~-~G~G~vv~ktit~~p~~gnp~pr~~~~~~~~~~iN~~gl~n~g~~~ 122 (336)
T d1f76a_ 45 KPVNCMGLTFKNPLGLAAGLDKDGECIDALG-A-MGFGSIEIGTVTPRPQPGNDKPRLFRLVDAEGLINRMGFNNLGVDN 122 (336)
T ss_dssp CCEEETTEEESSSEEECTTSSTTCCCHHHHH-H-TTCSEEEEEEECSSCBCCSCSCCEEEETTTTEEEECCCCCBCCHHH
T ss_pred CCeEECCeecCCCCEeCcccCCChHHHHHHH-h-hcccccccccccccccCCCCCcccccccccccchhhccCccccHHH
Confidence 3789999999999999853222333444433 3 3589998888776543211 000111
Q ss_pred hh---hcCCCCCcEEEEecCCC-------HHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHH
Q 020423 117 FL---AFSPEQHPIVLQIGGSN-------LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAM 186 (326)
Q Consensus 117 ~~---~~~~~~~piivQL~g~~-------~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv 186 (326)
+. .....+.++++++.++. .+++..+.+.+. .++|++|||++||+.. |.....+.+.+.+.+
T Consensus 123 ~~~~~~~~~~~~~l~v~I~~~~~~~~~~a~~d~~~~~~~~~-~~ad~iElNiScPN~~-------g~~~~~~~~~l~~~~ 194 (336)
T d1f76a_ 123 LVENVKKAHYDGVLGINIGKNKDTPVEQGKDDYLICMEKIY-AYAGYIAINISSPNTP-------GLRTLQYGEALDDLL 194 (336)
T ss_dssp HHHHHHHCCCCSEEEEEECCCTTSCGGGTHHHHHHHHHHHG-GGCSEEEEECCCSSST-------TGGGGGSHHHHHHHH
T ss_pred HHHHhhcccccceEEEEEeccCCcchHHHHHHHHHHHHHhh-cccceeeecccchhhh-------cccccccchhhccch
Confidence 11 12345678999997653 456666666554 5689999999999853 111123344444443
Q ss_pred HHH---------HhcCCCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCc------------ccCCCCcC
Q 020423 187 SVI---------AANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKA------------LLNGISPA 245 (326)
Q Consensus 187 ~av---------r~~~~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~------------~~~g~~~~ 245 (326)
+++ +...++|+.+|+++..+. .++.+ +++.+.+.|++.++...... ..+|+++
T Consensus 195 ~~~~~~~~~~~~~~~~~~Pv~vKlsp~~~~-~~i~~----~a~~~~~~g~~gv~~int~~~~~~~~~~~~~~~~GGlSG- 268 (336)
T d1f76a_ 195 TAIKNKQNDLQAMHHKYVPIAVKIAPDLSE-EELIQ----VADSLVRHNIDGVIATNTTLDRSLVQGMKNCDQTGGLSG- 268 (336)
T ss_dssp HHHHHHHHHHHHHHTSCCCEEEECCSCCCH-HHHHH----HHHHHHHTTCSEEEECCCBCCCTTSTTSTTTTCSSEEEE-
T ss_pred hhhhhhhhhhhhhccCcCCcccccchhhhh-hhhhh----hHHHHHhcCccchhhhhhhhccccccccccccccccccc-
Confidence 333 223578999999986432 12222 34455678999998754321 1123332
Q ss_pred CcCCCCCccHHHHHHHHhcC-CCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHH-HhCCchhHHhHH
Q 020423 246 ENRTIPPLKYEYYYALLRDF-PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAA-YQNPWYTLGHVD 311 (326)
Q Consensus 246 ~~~~~~~~~~~~i~~i~~~~-~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRal-l~dP~l~~~~i~ 311 (326)
+.+.+.....++++.+.. .++|||++|||.|++|+.+.+..|||+||||+++ +.+|.++.+.++
T Consensus 269 --~~i~~~al~~v~~v~~~~~~~ipIIG~GGI~s~~Da~e~i~aGAsaVQv~Tal~~~Gp~ii~~I~~ 334 (336)
T d1f76a_ 269 --RPLQLKSTEIIRRLSLELNGRLPIIGVGGIDSVIAAREKIAAGASLVQIYSGFIFKGPPLIKEIVT 334 (336)
T ss_dssp --GGGHHHHHHHHHHHHHHHTTSSCEEEESSCCSHHHHHHHHHHTCSEEEESHHHHHHCHHHHHHHHH
T ss_pred --chhHHHHHHHHHHHHHHcCCCCeEEEECCCCCHHHHHHHHHcCCcHHHHHHHHHhcChHHHHHHHh
Confidence 233344456667776654 3799999999999999999999999999999997 578996544443
|
| >d1d3ga_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.78 E-value=2.2e-18 Score=161.95 Aligned_cols=237 Identities=13% Similarity=0.079 Sum_probs=144.7
Q ss_pred cccccCeecCCcEEEccCCCCChHHHHHHHHHcCCCcEEEecceeecccccc---------------------ccchhhh
Q 020423 59 AEMVARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQ---------------------QGNLDRF 117 (326)
Q Consensus 59 p~~ig~~~l~nrivlAPM~~~s~~~~r~~~~~~Gg~gli~te~~~~~~~~~~---------------------~~~~~~~ 117 (326)
..++.|++++||+++|.=..-+...++.+.. .| +|.+.+..+..++.... ....+.+
T Consensus 51 ~v~~~Gl~~~nPi~lAsG~~~~~~~i~~~~~-~G-~G~vv~kTit~~~~~gn~~pr~~~~~~~~~~~n~~g~~~~g~~~~ 128 (367)
T d1d3ga_ 51 EVRVLGHKFRNPVGIAAGFDKHGEAVDGLYK-MG-FGFVEIGSVTPKPQEGNPRPRVFRLPEDQAVINRYGFNSHGLSVV 128 (367)
T ss_dssp CEEETTEEESSSEEECTTSSTTSSSHHHHHH-HT-CSEEEEEEECSSCBCCSCSCCEEEEGGGTEEEECCCCCBCCHHHH
T ss_pred ceEECCEecCCCcEeCcCCCCCHHHHHHHhh-cC-CcEEeeccccccccccCCchhhhhhccccccccccCcCCcchHHH
Confidence 5789999999999998622212334454443 34 89999988776543110 0000111
Q ss_pred h-----------hcCCCCCcEEEEecCC----CHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHH
Q 020423 118 L-----------AFSPEQHPIVLQIGGS----NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFV 182 (326)
Q Consensus 118 ~-----------~~~~~~~piivQL~g~----~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l 182 (326)
. +....+.|+++++.+. +..+....+.+..+.++|.+|+|++||+....+.. ......
T Consensus 129 ~~~~~~~~~~~~~~~~~~~pv~vsi~~~~~~~~~~~~~~~~~~~~~~~ad~lelNiScPn~~~~~~~-------~~~~~~ 201 (367)
T d1d3ga_ 129 EHRLRARQQKQAKLTEDGLPLGVNLGKNKTSVDAAEDYAEGVRVLGPLADYLVVNVSSPNTAGLRSL-------QGKAEL 201 (367)
T ss_dssp HHHHHTTHHHHHHHHHTTCCEEEEECCCTTCSCHHHHHHHHHHHHGGGCSEEEEESCCTTSTTC-----------CHHHH
T ss_pred HHHHHHHhhhcccccccCceEEEEeccccccHHHHHHHHHHHHHhhhcccccccccccccccccccc-------cccchh
Confidence 0 1223456999999874 23333444455556789999999999986422211 222222
Q ss_pred HH----HHHHH---HhcCCCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcc------------cCCCC
Q 020423 183 GE----AMSVI---AANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKAL------------LNGIS 243 (326)
Q Consensus 183 ~e----iv~av---r~~~~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~------------~~g~~ 243 (326)
.+ +++.. +...++|+.+|+++..+. .++.+ +++.+.++|+|.+++...... .+|.+
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~Pv~vKlsP~~~~----~~i~~-~a~~~~~~g~~gi~~~nt~~~~~~~~~~~~~~~~gg~s 276 (367)
T d1d3ga_ 202 RRLLTKVLQERDGLRRVHRPAVLVKIAPDLTS----QDKED-IASVVKELGIDGLIVTNTTVSRPAGLQGALRSETGGLS 276 (367)
T ss_dssp HHHHHHHHHHHHTSCGGGCCEEEEEECSCCCH----HHHHH-HHHHHHHHTCCEEEECCCBSCCCTTCCCTTTTSSSEEE
T ss_pred hhHHHHHHHhhhhcccccCCccccccCcccch----hhhhh-hHHHHHhhhhheeecccccccccccccccccccccccc
Confidence 22 22222 223478999999996432 23323 344556789999998644311 11122
Q ss_pred cCCcCCCCCccHHHHHHHHhcC-CCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHH-HhCCchhHHhHHHh
Q 020423 244 PAENRTIPPLKYEYYYALLRDF-PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAA-YQNPWYTLGHVDTA 313 (326)
Q Consensus 244 ~~~~~~~~~~~~~~i~~i~~~~-~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRal-l~dP~l~~~~i~~~ 313 (326)
+ ..+++.....+..+.+.. .++|||++|||.+++|+.+++..|||+|||++++ +.+|.+ ..++.+.
T Consensus 277 G---~~~~~i~l~~v~~v~~~~~~~ipIig~GGI~s~~Da~e~i~aGAs~VQi~Ta~~~~Gp~i-i~~I~~~ 344 (367)
T d1d3ga_ 277 G---KPLRDLSTQTIREMYALTQGRVPIIGVGGVSSGQDALEKIRAGASLVQLYTALTFWGPPV-VGKVKRE 344 (367)
T ss_dssp E---GGGHHHHHHHHHHHHHHTTTCSCEEEESSCCSHHHHHHHHHHTCSEEEESHHHHHHCTHH-HHHHHHH
T ss_pred c---ccchhhhHHHHHHHHHHhCCCccEEEECCCCCHHHHHHHHHcCCCHHHhhHHHHhcCcHH-HHHHHHH
Confidence 1 222333455566665543 3799999999999999999999999999999997 578995 4444443
|
| >d1tv5a1 c.1.4.1 (A:158-566) Dihydroorotate dehydrogenase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Plasmodium falciparum [TaxId: 5833]
Probab=99.77 E-value=2.6e-18 Score=163.61 Aligned_cols=238 Identities=12% Similarity=0.087 Sum_probs=152.1
Q ss_pred ccccccCeecCCcEEEccCCCCChHHHHHHHHHcCCCcEEEecceeecccccc---------------------ccchhh
Q 020423 58 KAEMVARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQ---------------------QGNLDR 116 (326)
Q Consensus 58 ~p~~ig~~~l~nrivlAPM~~~s~~~~r~~~~~~Gg~gli~te~~~~~~~~~~---------------------~~~~~~ 116 (326)
-+.++.|++++||+.+|.=.+-+-..++.+. +. |+|.+.++.++.++..-+ +...+.
T Consensus 51 L~~~v~Gl~f~NPiglAAG~dk~~~~i~~~~-~l-GfG~ve~gTvT~~p~~GNp~PR~~r~~~~~~liN~~Gl~n~G~~~ 128 (409)
T d1tv5a1 51 ACTNIKHLDFINPFGVAAGFDKNGVCIDSIL-KL-GFSFIEIGTITPRGQTGNAKPRIFRDVESRSIINSCGFNNMGCDK 128 (409)
T ss_dssp GCEEETTEEESSSEEECTTTTTTCSSHHHHH-TT-TCSEEEEEEECSSCBCCSCSCCEEEETTTTEEEECCCSCBSCHHH
T ss_pred cceEECCeecCCcCEeccccCCCHHHHHHHH-hc-CCCeEEeeeeeeccccCCCCccccccccccccccccCCCcccHHH
Confidence 4578999999999999852111223344433 23 499999998876643210 001111
Q ss_pred hhh------------cCCCCCcEEEEecCC----CHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHH
Q 020423 117 FLA------------FSPEQHPIVLQIGGS----NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPK 180 (326)
Q Consensus 117 ~~~------------~~~~~~piivQL~g~----~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~ 180 (326)
+.+ ......++.+++..+ +..+....+.+....++|.+|||.+||+.. |..-..+++
T Consensus 129 ~~~~l~~~~~~~~~~~~~~~~i~gi~~~~~~~~~~~~~~~~~~~~~~~~~aD~~elNiScPNt~-------glr~~~~~~ 201 (409)
T d1tv5a1 129 VTENLILFRKRQEEDKLLSKHIVGVSIGKNKDTVNIVDDLKYCINKIGRYADYIAINVSSPNTP-------GLRDNQEAG 201 (409)
T ss_dssp HHHHHHHHHHHHHHCSTTTTCEEEEEECCCTTCSCHHHHHHHHHHHHGGGCSEEEEECCCTTST-------TGGGGGSHH
T ss_pred HHHHHHHHhhhhhhcccccccccccccccccchhHHHHHHHHHHHHHhhcccceeecccccccc-------ccccccCHH
Confidence 110 011223455555432 233333444445555689999999999964 333336789
Q ss_pred HHHHHHHHHHhcC---------------------------------------------------CCcEEEEeccCCCCCc
Q 020423 181 FVGEAMSVIAANT---------------------------------------------------NVPVSVKCRIGVDDHD 209 (326)
Q Consensus 181 ~l~eiv~avr~~~---------------------------------------------------~~pv~vK~r~g~~~~~ 209 (326)
.+.++++++++.. ..|+.||+++..++ +
T Consensus 202 ~L~~ll~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ppi~vKlsPd~~~-~ 280 (409)
T d1tv5a1 202 KLKNIILSVKEEIDNLEKNNIMNDESTYNEDNKIVEKKNNFNKNNSHMMKDAKDNFLWFNTTKKKPLVFVKLAPDLNQ-E 280 (409)
T ss_dssp HHHHHHHHHHHHHHHHC--------------------------------------CCCCSSSSSCCEEEEEECSCCCH-H
T ss_pred HHHHHHHHHHHHHHhhhcccccccccccccchhhhhhccccccccccccccchhhhhhccccccCCceEEEeCCCCCc-h
Confidence 9999999887632 23799999996544 2
Q ss_pred cHHHHHHHHHHHhhhCCccEEEEecCCcc----------cCCCCcCCcCCCCCccHHHHHHHHhcC-CCceEEEeCCCCC
Q 020423 210 SYNQLCDFIYKVSSLSPTRHFIIHSRKAL----------LNGISPAENRTIPPLKYEYYYALLRDF-PDLTFTLNGGINT 278 (326)
Q Consensus 210 ~~~e~~~~ia~~le~~Gvd~I~v~~~~~~----------~~g~~~~~~~~~~~~~~~~i~~i~~~~-~~iPVIa~GgI~s 278 (326)
++.+ +++..++.|+|.+++...+.. .+|+++ +.+.+.....++++++.. .++|||++|||.|
T Consensus 281 ~i~~----i~~~~~~~g~dgii~~Nt~~~~~~~~~~~~~~GGlSG---~~l~~~al~~v~~v~~~~~~~ipIIGvGGI~s 353 (409)
T d1tv5a1 281 QKKE----IADVLLETNIDGMIISNTTTQINDIKSFENKKGGVSG---AKLKDISTKFICEMYNYTNKQIPIIASGGIFS 353 (409)
T ss_dssp HHHH----HHHHHHHTTCSEEEECCCBSCCCCCGGGTTCCSEEEE---HHHHHHHHHHHHHHHHHTTTCSCEEEESSCCS
T ss_pred hhHH----HHHHHHhccccceecccccccccccccccccCCcccc---hhHHHHHHHHHHHHHHHcCCCceEEEECCCCC
Confidence 2333 445667899999999765421 123332 223334456777777765 3699999999999
Q ss_pred HHHHHHHHHhCCChhhhhHHHH-hCCchhHHhHHHh
Q 020423 279 VDEVNAALRKGAHHVMVGRAAY-QNPWYTLGHVDTA 313 (326)
Q Consensus 279 ~~da~~~l~~GaD~V~iGRall-~dP~l~~~~i~~~ 313 (326)
++|+.+.+..|||+|||+++++ ..|.+ .++|.+.
T Consensus 354 ~~Da~e~i~AGAs~VQv~T~li~~Gp~~-v~~I~~~ 388 (409)
T d1tv5a1 354 GLDALEKIEAGASVCQLYSCLVFNGMKS-AVQIKRE 388 (409)
T ss_dssp HHHHHHHHHTTEEEEEESHHHHHHGGGH-HHHHHHH
T ss_pred HHHHHHHHHcCCCHHhhhhHHHhcChHH-HHHHHHH
Confidence 9999999999999999999985 55986 4444443
|
| >d1p0ka_ c.1.4.1 (A:) Isopentenyl-diphosphate delta-isomerase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Isopentenyl-diphosphate delta-isomerase species: Bacillus subtilis [TaxId: 1423]
Probab=99.50 E-value=9e-13 Score=121.14 Aligned_cols=222 Identities=13% Similarity=0.008 Sum_probs=124.3
Q ss_pred ccccCeecCCcEEEccCCCCCh-------HHHHHHHHHcCCCcEEEecceeeccccccccchhhhhhcCCCCCcEEEEec
Q 020423 60 EMVARQYLPPWFSVAPMMDWTD-------NHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIG 132 (326)
Q Consensus 60 ~~ig~~~l~nrivlAPM~~~s~-------~~~r~~~~~~Gg~gli~te~~~~~~~~~~~~~~~~~~~~~~~~~piivQL~ 132 (326)
.+|.|.++++|++.|||.+.+. ..+...+.+.| ......++..... ......................+..
T Consensus 27 t~i~G~~l~~Pi~is~Ms~g~~~~~~~~~~alA~aA~~~g-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (329)
T d1p0ka_ 27 TKIGELSSSSPIFINAMTGGGGKLTYEINKSLARAASQAG-IPLAVGSQMSALK-DPSERLSYEIVRKENPNGLIFANLG 104 (329)
T ss_dssp EEETTEEESCSEEEECCCCSCHHHHHHHHHHHHHHHHHHT-CCEECCCCTTTTT-CHHHHHHHHHHHHHCSSSCEEEEEE
T ss_pred EEECCEEcCCceEECCHHHhhhhccHHHHHHHHHHHHHcC-CCeecccccccch-hHHHHhhhhhHhhhCCcceEEEeec
Confidence 5667899999999999976552 22333344444 3333333211100 0000000011111112334455554
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHH
Q 020423 133 GSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYN 212 (326)
Q Consensus 133 g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~ 212 (326)
.... .....+.+++.|++.+.+|..+|...... .+. .......+.++.+++.++.|+.+|.-.+..+ .+
T Consensus 105 ~~~~--~~~~~~~~~~~g~~ai~~~~~~~~~~~~~---~~~---~~~~~~~~~i~~i~~~~~~~vivk~v~~~~~---~~ 173 (329)
T d1p0ka_ 105 SEAT--AAQAKEAVEMIGANALQIHLNVIQEIVMP---EGD---RSFSGALKRIEQICSRVSVPVIVKEVGFGMS---KA 173 (329)
T ss_dssp TTCC--HHHHHHHHHHTTCSEEEEEECTTTTC--------------CTTHHHHHHHHHHHCSSCEEEEEESSCCC---HH
T ss_pred cchh--HHHHHHHHHHcCCCEEEecccccchhhhc---ccc---ccccchHHHHHHHHHHcCCCcEEEecCCcch---HH
Confidence 3321 22233456778999999999998743221 121 2233456677888888899999986554332 22
Q ss_pred HHHHHHHHHhhhCCccEEEEecCCc--ccC--------CCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHH
Q 020423 213 QLCDFIYKVSSLSPTRHFIIHSRKA--LLN--------GISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEV 282 (326)
Q Consensus 213 e~~~~ia~~le~~Gvd~I~v~~~~~--~~~--------g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da 282 (326)
+. +.+.++|+|+|.|++... +.. +........+ .....+.++.....++|||+.|||+++.|+
T Consensus 174 ~a-----~~~~~~GaD~i~v~~~gG~~~~~~~~~~~~~~~g~~~~~~~--~~~~~l~~~~~~~~~v~viadGGIr~g~Dv 246 (329)
T d1p0ka_ 174 SA-----GKLYEAGAAAVDIGGYGGTNFSKIENLRRQRQISFFNSWGI--STAASLAEIRSEFPASTMIASGGLQDALDV 246 (329)
T ss_dssp HH-----HHHHHHTCSEEEEEC---------------CCGGGGTTCSC--CHHHHHHHHHHHCTTSEEEEESSCCSHHHH
T ss_pred HH-----HHHHhcCCCEEEEcCCCCCCccccchhhcccCccchhHhHH--HHHHHHHHHHhhcCCceEEEcCCcccHHHH
Confidence 22 223468999999975321 000 0000000011 123444555555568999999999999999
Q ss_pred HHHHHhCCChhhhhHHHHh
Q 020423 283 NAALRKGAHHVMVGRAAYQ 301 (326)
Q Consensus 283 ~~~l~~GaD~V~iGRall~ 301 (326)
.+++..|||+|++||+++.
T Consensus 247 ~KAlalGAdaV~iGr~~l~ 265 (329)
T d1p0ka_ 247 AKAIALGASCTGMAGHFLK 265 (329)
T ss_dssp HHHHHTTCSEEEECHHHHH
T ss_pred HHHHHcCCCchhccHHHHH
Confidence 9999999999999998773
|
| >d1vcfa1 c.1.4.1 (A:23-332) Isopentenyl-diphosphate delta-isomerase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Isopentenyl-diphosphate delta-isomerase species: Thermus thermophilus [TaxId: 274]
Probab=99.34 E-value=7.7e-12 Score=113.42 Aligned_cols=221 Identities=14% Similarity=0.084 Sum_probs=119.9
Q ss_pred ccccCeecCCcEEEccCCCCChH------HHHHHHHHcCCCcEEEecceeeccccccccchhhhhhc--CCCCCcEEEEe
Q 020423 60 EMVARQYLPPWFSVAPMMDWTDN------HYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAF--SPEQHPIVLQI 131 (326)
Q Consensus 60 ~~ig~~~l~nrivlAPM~~~s~~------~~r~~~~~~Gg~gli~te~~~~~~~~~~~~~~~~~~~~--~~~~~piivQL 131 (326)
.++.|.++++||++|||++.+.. .+...+.+.| ..+...+... ....+....+..+ ...+.++..|+
T Consensus 28 t~~~G~~l~~Pi~iapm~~~~~~~~~~~~~lA~aA~~~g-~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (310)
T d1vcfa1 28 TPFLGKTLKAPFLIGAMTGGEENGERINLALAEAAEALG-VGMMLGSGRI----LLERPEALRSFRVRKVAPKALLIANL 102 (310)
T ss_dssp EEETTEEESSSEEECCCC---CCHHHHHHHHHHHHHHHT-CEEEEEECHH----HHHCTTTHHHHCCTTTCSSSCEEEEE
T ss_pred eEECCEEcCCCEEEcChhhhhhhhhHHHHHHHHHHHHcC-CCeEeccchh----cchhhhhhcccchHHhcCCcceeeee
Confidence 56668999999999999765321 2333344444 4444333211 0001111111111 12345678887
Q ss_pred cCCCHHHH--HHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCc
Q 020423 132 GGSNLDNL--AKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHD 209 (326)
Q Consensus 132 ~g~~~~~f--~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~ 209 (326)
......++ ....+..+..+++.+++|..++.......+ .......+....+ ...+.|+.+|...+...
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~-~~~~~p~~~k~v~~~~~-- 172 (310)
T d1vcfa1 103 GLAQLRRYGRDDLLRLVEMLEADALAFHVNPLQEAVQRGD-------TDFRGLVERLAEL-LPLPFPVMVKEVGHGLS-- 172 (310)
T ss_dssp EGGGGGTCCHHHHHHHHHHHTCSEEEEECCHHHHHHTTSC-------CCCTTHHHHHHHH-CSCSSCEEEECSSSCCC--
T ss_pred cccchhhhhHHHHHHHHHhcCCCeeccccccchhhhcccc-------cccccHHHHHHHH-hhccCCceeeeecCccc--
Confidence 65432211 122233344578999999877643211111 1111223333332 34578999997654332
Q ss_pred cHHHHHHHHHHHhhhCCccEEEEecCCcc---------cCC-CCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCH
Q 020423 210 SYNQLCDFIYKVSSLSPTRHFIIHSRKAL---------LNG-ISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTV 279 (326)
Q Consensus 210 ~~~e~~~~ia~~le~~Gvd~I~v~~~~~~---------~~g-~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~ 279 (326)
.++ ++.+.++|+|.|.|++.... ..+ ..............+.+.++.+...++|||+.|||+++
T Consensus 173 -~e~-----a~~~~~aGvd~i~vsn~gg~~~~~~~~~~~~~~~~~~~~~~~g~~~~~al~~~~~~~~~i~Ii~dGGIr~g 246 (310)
T d1vcfa1 173 -REA-----ALALRDLPLAAVDVAGAGGTSWARVEEWVRFGEVRHPELCEIGIPTARAILEVREVLPHLPLVASGGVYTG 246 (310)
T ss_dssp -HHH-----HHHHTTSCCSEEECCCBTSCCHHHHHHTC--------CCTTCSCBHHHHHHHHHHHCSSSCEEEESSCCSH
T ss_pred -HHH-----HHHHHHcCCCEEEeccccccchhhcccccccCchhhhhhhhcchHHHHHHHHHHhhcCCCeEEeCCCCCch
Confidence 222 23456799999999753210 000 00000001111123445555555568999999999999
Q ss_pred HHHHHHHHhCCChhhhhHHHHh
Q 020423 280 DEVNAALRKGAHHVMVGRAAYQ 301 (326)
Q Consensus 280 ~da~~~l~~GaD~V~iGRall~ 301 (326)
.|+.+++..|||+|++||+++.
T Consensus 247 ~Dv~KALalGAdaV~iGr~~l~ 268 (310)
T d1vcfa1 247 TDGAKALALGADLLAVARPLLR 268 (310)
T ss_dssp HHHHHHHHHTCSEEEECGGGHH
T ss_pred HHHHHHHHhCCCEeeEhHHHHH
Confidence 9999999999999999999874
|
| >d1vrda1 c.1.5.1 (A:1-85,A:213-457) Inosine monophosphate dehydrogenase (IMPDH) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Thermotoga maritima [TaxId: 2336]
Probab=99.32 E-value=2.5e-11 Score=111.37 Aligned_cols=198 Identities=15% Similarity=0.145 Sum_probs=124.8
Q ss_pred CeecCCcEEEccCCCCChHHHHHHHHHcCCCcEEEecceeeccccccccchhhhhhcCCCCCcEEEEecCCCHHHHHHHH
Q 020423 64 RQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSNLDNLAKAT 143 (326)
Q Consensus 64 ~~~l~nrivlAPM~~~s~~~~r~~~~~~Gg~gli~te~~~~~~~~~~~~~~~~~~~~~~~~~piivQL~g~~~~~f~~aA 143 (326)
.+.++-||+.|||.++++..+.....+.||.|.+-.. ..++. +.+....+++...++.+.+. .+++.+ +-+
T Consensus 33 ~l~~~iPIIaa~MdtV~~~~mA~als~~GGlGvi~r~-~~~e~------~~~~i~~vk~~~~~v~~~vg-v~~~~~-e~~ 103 (330)
T d1vrda1 33 QIRINIPLVSAAMDTVTEAALAKALAREGGIGIIHKN-LTPDE------QARQVSIVKKTRLLVGAAVG-TSPETM-ERV 103 (330)
T ss_dssp SCEESSSEEECCCTTTCSHHHHHHHHTTTCEEEECSS-SCHHH------HHHHHHHHHTCCBCCEEEEC-SSTTHH-HHH
T ss_pred CcccCCCEEeCCCCCcCCHHHHHHHHHCCCeEEeecc-cchhh------hHHHHHHHhhhccEEEEEEe-cCHHHH-HHH
Confidence 4567789999999999999999988888987765321 11111 11111122334444555553 334433 445
Q ss_pred HHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC-CCcEEEEeccCCCCCccHHHHHHHHHHHh
Q 020423 144 ELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFIYKVS 222 (326)
Q Consensus 144 ~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~-~~pv~vK~r~g~~~~~~~~e~~~~ia~~l 222 (326)
+.+.++|.|.+-|..+.. .++...+.++.+|+.. +.++.+.-- .+.+. ++.+
T Consensus 104 ~~li~agvd~ivId~A~G----------------~~~~~~~~ik~ik~~~~~~~viaGnV------~t~~~-----a~~l 156 (330)
T d1vrda1 104 EKLVKAGVDVIVIDTAHG----------------HSRRVIETLEMIKADYPDLPVVAGNV------ATPEG-----TEAL 156 (330)
T ss_dssp HHHHHTTCSEEEECCSCC----------------SSHHHHHHHHHHHHHCTTSCEEEEEE------CSHHH-----HHHH
T ss_pred HHHHHCCCCEEEEecCCC----------------CchhHHHHHHHHHHhCCCCCEEeech------hHHHH-----HHHH
Confidence 566788999988854321 2445667788887654 677777521 12221 2344
Q ss_pred hhCCccEEEEecCCc------ccCCCCcCCcCCCCCcc-HHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhh
Q 020423 223 SLSPTRHFIIHSRKA------LLNGISPAENRTIPPLK-YEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMV 295 (326)
Q Consensus 223 e~~Gvd~I~v~~~~~------~~~g~~~~~~~~~~~~~-~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~i 295 (326)
.++|+|.|.|-.+.. ...|. ..|... ...+.+..+. .++|||+.|||.+..|+.+++..|||+||+
T Consensus 157 ~~~GaD~v~VGig~Gs~ctt~~~~G~------g~p~~sai~~~~~~~~~-~~vpvIAdGGi~~~gdiakAla~GAd~Vm~ 229 (330)
T d1vrda1 157 IKAGADAVKVGVGPGSICTTRVVAGV------GVPQLTAVMECSEVARK-YDVPIIADGGIRYSGDIVKALAAGAESVMV 229 (330)
T ss_dssp HHTTCSEEEECSSCSTTCHHHHHHCC------CCCHHHHHHHHHHHHHT-TTCCEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred HHcCCCEEeeccccCccccccceecc------ccccchhHHHHHHHHHh-cCceEEecCCcccCCchheeeeccCceeee
Confidence 579999999843321 00111 111111 2233444544 489999999999999999999999999999
Q ss_pred hHHHHhCCc
Q 020423 296 GRAAYQNPW 304 (326)
Q Consensus 296 GRall~dP~ 304 (326)
|+.|....+
T Consensus 230 Gs~fa~~~E 238 (330)
T d1vrda1 230 GSIFAGTEE 238 (330)
T ss_dssp SHHHHTBTT
T ss_pred cchheeecc
Confidence 999987544
|
| >d1jr1a1 c.1.5.1 (A:17-112,A:233-514) Inosine monophosphate dehydrogenase (IMPDH) {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=99.29 E-value=1e-11 Score=115.97 Aligned_cols=209 Identities=16% Similarity=0.085 Sum_probs=124.4
Q ss_pred cCeecCCcEEEccCCCCChHHHHHHHHHcCCCcEEEecceeeccccccccchhhhhh----c--CCCCCcEEEEecCCCH
Q 020423 63 ARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLA----F--SPEQHPIVLQIGGSNL 136 (326)
Q Consensus 63 g~~~l~nrivlAPM~~~s~~~~r~~~~~~Gg~gli~te~~~~~~~~~~~~~~~~~~~----~--~~~~~piivQL~g~~~ 136 (326)
+.+.++-||+.|||.++++..+.....+.||.|.+--. ..++...........+.. . ......+.+-+ +...
T Consensus 41 ~~~~l~iPIIsApMdtVt~~~mA~als~~GGLGvLhr~-~~~e~~~~ev~~v~~~~~~p~~~~~~~~~l~v~aav-g~~~ 118 (378)
T d1jr1a1 41 KKITLKTPLVSSPMDTVTEAGMAIAMALTGGIGFIHHN-CTPEFQANEVRKVKKYEQYPLASKDAKKQLLCGAAI-GTHE 118 (378)
T ss_dssp SSCEESSCEEECCCTTTCSHHHHHHHHHHTCEEEECCS-SCHHHHHHHHHHHHTSCCCTTCCBCTTSCBCCEEEE-CSST
T ss_pred CCccCCCCEEECCCCCcCCHHHHHHHHHCCCeeEEcCC-CCHHHHHHHHheehhhhhCcccccccccCEEEEEEe-ccCH
Confidence 45567789999999999999999988888998876432 222221111111111100 0 00111233333 2223
Q ss_pred HHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC-CCcEEEEeccCCCCCccHHHHH
Q 020423 137 DNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLC 215 (326)
Q Consensus 137 ~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~-~~pv~vK~r~g~~~~~~~~e~~ 215 (326)
+ ....+..+.++|.|.+.++...+. .+.+.+.++.+++.. +.++.+. +..+.+.
T Consensus 119 ~-~~~~~~~l~~agv~vi~id~a~g~----------------~~~~~~~i~~ik~~~~~~~iIaG------nVaT~e~-- 173 (378)
T d1jr1a1 119 D-DKYRLDLLALAGVDVVVLDSSQGN----------------SIFQINMIKYMKEKYPNLQVIGG------NVVTAAQ-- 173 (378)
T ss_dssp H-HHHHHHHHHHHTCCEEEECCSSCC----------------SHHHHHHHHHHHHHSTTCEEEEE------EECSHHH--
T ss_pred H-HHHHHHHHHhhccceEeeeccCcc----------------chhhHHHHHHHHHHCCCCceeec------ccccHHH--
Confidence 3 333456667789999999865333 344566777777655 5666553 1123332
Q ss_pred HHHHHHhhhCCccEEEEecCCcccCCCCcCC--cCCCCCcc-HHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCCh
Q 020423 216 DFIYKVSSLSPTRHFIIHSRKALLNGISPAE--NRTIPPLK-YEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHH 292 (326)
Q Consensus 216 ~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~--~~~~~~~~-~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~ 292 (326)
++.|.++|+|.|.|..+... +..... .-..|... ...+.+..++. ++|||+.|||.+..|+.++|..|||+
T Consensus 174 ---a~~L~~aGAD~VkVGiG~Gs--~ctTr~~tGvG~pq~sai~~~~~~a~~~-~vpIIADGGi~~~gdiakAla~GAd~ 247 (378)
T d1jr1a1 174 ---AKNLIDAGVDALRVGMGCGS--ICITQEVLACGRPQATAVYKVSEYARRF-GVPVIADGGIQNVGHIAKALALGAST 247 (378)
T ss_dssp ---HHHHHHHTCSEEEECSSCST--TBCHHHHHCCCCCHHHHHHHHHHHHGGG-TCCEEEESCCCSHHHHHHHHHTTCSE
T ss_pred ---HHHHHHhCCCEEeecccccc--ccccccccccCcccchhhhHHHHhhccc-CCceecccccccCCceeeEEEeecce
Confidence 23445689999999765421 000000 00111111 12234444554 89999999999999999999999999
Q ss_pred hhhhHHHHhCCc
Q 020423 293 VMVGRAAYQNPW 304 (326)
Q Consensus 293 V~iGRall~dP~ 304 (326)
||||+.|....+
T Consensus 248 VMmGs~fAgt~E 259 (378)
T d1jr1a1 248 VMMGSLLAATTE 259 (378)
T ss_dssp EEESTTTTTBTT
T ss_pred eeecceeeeeec
Confidence 999999986544
|
| >d1tb3a1 c.1.4.1 (A:1-349) Hydroxyacid oxidase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Hydroxyacid oxidase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.23 E-value=9.1e-11 Score=108.58 Aligned_cols=214 Identities=12% Similarity=0.164 Sum_probs=129.9
Q ss_pred cccccCeecCCcEEEccCCCC------ChHHHHHHHHHcCCCcEEEecceeeccccccccchhhhhhcCCCCCcEEEEec
Q 020423 59 AEMVARQYLPPWFSVAPMMDW------TDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIG 132 (326)
Q Consensus 59 p~~ig~~~l~nrivlAPM~~~------s~~~~r~~~~~~Gg~gli~te~~~~~~~~~~~~~~~~~~~~~~~~~piivQL~ 132 (326)
..++-|.++.-|++.+||++. -+..+...+++.| ..+....... .. .+...... .+.+...|+.
T Consensus 60 st~~lG~~l~~P~~Iapmtgg~~~~~~~~~~lA~aA~~~g-~~~~~~s~s~-----~~---~e~v~~~~-~~~~~~~ql~ 129 (349)
T d1tb3a1 60 RTTIQGQEISAPICISPTAFHSIAWPDGEKSTARAAQEAN-ICYVISSYAS-----YS---LEDIVAAA-PEGFRWFQLY 129 (349)
T ss_dssp CEEETTEEESSSEEECCCSCGGGTCTTTHHHHHHHHHHHT-CCEEECTTCS-----SC---HHHHHHHS-TTCCEEEECC
T ss_pred ceeECCcCccceEEEcchhcccccccchhhHHHHhhhhcc-cceeeccccc-----cc---chhhhhhc-cCCCeeeeee
Confidence 356668899999999999874 2445555666666 4443333211 01 11111111 3456788987
Q ss_pred CC-CHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCC-----------------Ccc--------ccccCCHHHHHHHH
Q 020423 133 GS-NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHG-----------------CFG--------VSLMLDPKFVGEAM 186 (326)
Q Consensus 133 g~-~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d-----------------~yG--------gsl~~r~~~l~eiv 186 (326)
.. +.+.-.+..++++++|+..+-+....|...+..+| ... .....++.+..+-+
T Consensus 130 ~~~~~~~~~~~i~~~~~~g~~a~~~tvd~~~~~~~~~d~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 209 (349)
T d1tb3a1 130 MKSDWDFNKQMVQRAEALGFKALVITIDTPVLGNRRRDKRNQLNLEANILLKDLRALKEEKPTQSVPVSFPKASFCWNDL 209 (349)
T ss_dssp CCSCTTHHHHHHHHHHHHTCCCEEEECSCSSCCCCHHHHHTTCCCCC----CCSCCCCC-------------CCCCHHHH
T ss_pred cccCHHHHHHHHHHHHhcCCcccccccCchhhcchhhhhhccccCCcccchhhhhhhhhccccccccccccCCCCCHHHH
Confidence 54 44555667788999999988876554421110000 000 00001111223678
Q ss_pred HHHHhcCCCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcC-
Q 020423 187 SVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF- 265 (326)
Q Consensus 187 ~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~- 265 (326)
+.+++.++.|+.+|--.+ .++. ....++|+|.+.|++.....- .. .+...+.+.++++..
T Consensus 210 ~~l~~~~~~pii~Kgi~~------~~da-----~~a~~~G~d~i~vsnhggr~~-------d~-~~~~~~~l~~i~~~~~ 270 (349)
T d1tb3a1 210 SLLQSITRLPIILKGILT------KEDA-----ELAMKHNVQGIVVSNHGGRQL-------DE-VSASIDALREVVAAVK 270 (349)
T ss_dssp HHHHTTCCSCEEEEEECS------HHHH-----HHHHHTTCSEEEECCGGGTSS-------CS-BCCHHHHHHHHHHHHT
T ss_pred HHHHHhcCCCcccchhhh------hHHH-----HHHHHhhccceeeeccccccc-------cc-cccchhhcceeeeccC
Confidence 888888999999994432 2222 233469999999974321100 01 112355555555543
Q ss_pred CCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHh
Q 020423 266 PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 301 (326)
Q Consensus 266 ~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~ 301 (326)
.++|||+.|||+++.|+.++|..|||+|++||++|.
T Consensus 271 ~~~~iiadGGIR~G~Dv~KALALGA~~V~igrp~L~ 306 (349)
T d1tb3a1 271 GKIEVYMDGGVRTGTDVLKALALGARCIFLGRPILW 306 (349)
T ss_dssp TSSEEEEESSCCSHHHHHHHHHTTCSCEEESHHHHH
T ss_pred CCeeEEeccCcCcHHHHHHHHHcCCCEEEEChHHHH
Confidence 379999999999999999999999999999999884
|
| >d1eepa_ c.1.5.1 (A:) Inosine monophosphate dehydrogenase (IMPDH) {Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]
Probab=99.20 E-value=1.8e-10 Score=107.84 Aligned_cols=202 Identities=13% Similarity=0.097 Sum_probs=121.8
Q ss_pred cCeecCCcEEEccCCCCChHHHHHHHHHcCCCcEEEecceeecccccccc-----------------------------c
Q 020423 63 ARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQG-----------------------------N 113 (326)
Q Consensus 63 g~~~l~nrivlAPM~~~s~~~~r~~~~~~Gg~gli~te~~~~~~~~~~~~-----------------------------~ 113 (326)
++++++-||+.|||.++++..++....+.||.|.+--.+ ..+......+ .
T Consensus 35 ~~~~l~iPIisA~MDtVt~~~mAi~ma~~GGlgVihr~~-~ie~q~~~v~~Vk~~~~~~~~~~~~d~~~~~~~~~t~~~~ 113 (388)
T d1eepa_ 35 KNISLNIPFLSSAMDTVTESQMAIAIAKEGGIGIIHKNM-SIEAQRKEIEKVKTYKFQKTINTNGDTNEQKPEIFTAKQH 113 (388)
T ss_dssp SSCEESSSEEECCCTTTCSHHHHHHHHHHTSEEEECSSS-CHHHHHHHHHHHHTCC------------------------
T ss_pred CCEecCCCEEecCCCCCCCHHHHHHHHHCCCEEEEeCCC-CHHHHHHHHHHhhhccccccccccCccccccchhhhhhhh
Confidence 567888999999999999999998877789988774221 1110000000 0
Q ss_pred h---hhhhh----------cCCCCC--cEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCC
Q 020423 114 L---DRFLA----------FSPEQH--PIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLD 178 (326)
Q Consensus 114 ~---~~~~~----------~~~~~~--piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r 178 (326)
. +.+.+ ..+... .+.+-+ +. +++..+-+..+.++|+|.+-|.... | .
T Consensus 114 ~~~~~a~~d~~~~~~~p~~~~d~~~~l~vgaAv-g~-~~~~~~ra~~L~~aG~D~ivID~Ah-----------G-----~ 175 (388)
T d1eepa_ 114 LEKSDAYKNAEHKEDFPNACKDLNNKLRVGAAV-SI-DIDTIERVEELVKAHVDILVIDSAH-----------G-----H 175 (388)
T ss_dssp --------------CCTTCCBCTTSCBCCEEEE-CS-CTTHHHHHHHHHHTTCSEEEECCSC-----------C-----S
T ss_pred hhhhHHHHhHHHHhhhhHHHhhhhccchhhhcc-CC-CHHHHHHHHHHHhhccceeeeeccc-----------c-----c
Confidence 0 00000 000000 112222 11 2334455566788999999886421 1 2
Q ss_pred HHHHHHHHHHHHhcC-CCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCc------ccCCCCcCCcCCCC
Q 020423 179 PKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKA------LLNGISPAENRTIP 251 (326)
Q Consensus 179 ~~~l~eiv~avr~~~-~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~------~~~g~~~~~~~~~~ 251 (326)
.+.+.+.++.+++.. +.||.+. +..+.+. ++.|.++|+|.|-|--+.. ...|.. .|
T Consensus 176 s~~~~~~i~~ik~~~~~v~vIaG------NV~T~e~-----a~~L~~~GaD~VkVGiGpGs~CtTr~~~GvG------~p 238 (388)
T d1eepa_ 176 STRIIELIKKIKTKYPNLDLIAG------NIVTKEA-----ALDLISVGADCLKVGIGPGSICTTRIVAGVG------VP 238 (388)
T ss_dssp SHHHHHHHHHHHHHCTTCEEEEE------EECSHHH-----HHHHHTTTCSEEEECSSCSTTSHHHHHHCCC------CC
T ss_pred hHHHHHHHHHHHHHCCCCceeec------cccCHHH-----HHHHHhcCCCeeeeccccccccccccccccC------cc
Confidence 455678888888765 6787665 1223332 2334578999999864421 011211 12
Q ss_pred CccHHHHH---HHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhCC
Q 020423 252 PLKYEYYY---ALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNP 303 (326)
Q Consensus 252 ~~~~~~i~---~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~dP 303 (326)
. +..+. +..+. ..+|||+-|||.+.-|+.++|..|||+||+|+.|-...
T Consensus 239 q--~sai~~~~~~~~~-~~vpiIADGGi~~~Gdi~KAla~GAd~VMlG~~lAg~~ 290 (388)
T d1eepa_ 239 Q--ITAICDVYEACNN-TNICIIADGGIRFSGDVVKAIAAGADSVMIGNLFAGTK 290 (388)
T ss_dssp H--HHHHHHHHHHHTT-SSCEEEEESCCCSHHHHHHHHHHTCSEEEECHHHHTBT
T ss_pred h--HHHHHHHHHHhcc-CCceEEeccccCcCCceeeeEEeccceeecchhhhccc
Confidence 2 33333 33333 37999999999999999999999999999999998643
|
| >d1y0ea_ c.1.2.5 (A:) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: NanE-like domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE species: Staphylococcus aureus [TaxId: 1280]
Probab=99.12 E-value=1.6e-10 Score=99.37 Aligned_cols=143 Identities=13% Similarity=0.063 Sum_probs=91.0
Q ss_pred HHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHH
Q 020423 140 AKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIY 219 (326)
Q Consensus 140 ~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia 219 (326)
.+..+.+.++|+|.|.++...+... + . .+.+.++.+++....++...- ..+.++.
T Consensus 78 ~~~~~~~~~agad~v~~~~~~~~~~----~-------~---~~~~~~~~~~~~~~~~~v~~~------~~t~~~a----- 132 (222)
T d1y0ea_ 78 SKEVDELIESQCEVIALDATLQQRP----K-------E---TLDELVSYIRTHAPNVEIMAD------IATVEEA----- 132 (222)
T ss_dssp HHHHHHHHHHTCSEEEEECSCSCCS----S-------S---CHHHHHHHHHHHCTTSEEEEE------CSSHHHH-----
T ss_pred HHHHHhHHHcCCCEEEeeccccccc----c-------c---hHHHHHHHHHHhCCceEEeec------CCCHHHH-----
Confidence 3444556667999999987544321 1 1 234556666555433333321 1223322
Q ss_pred HHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHH
Q 020423 220 KVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAA 299 (326)
Q Consensus 220 ~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRal 299 (326)
+...+.|+|+|.++........ . ........++.+.++.+.. ++|||++|||.|++|+.++++.|||+|++||++
T Consensus 133 ~~~~~~g~d~i~~~~~~~~~~~-~---~~~~~~~~~~~i~~~~~~~-~iPVia~GGI~t~~d~~~~~~~GAdgV~iGsAi 207 (222)
T d1y0ea_ 133 KNAARLGFDYIGTTLHGYTSYT-Q---GQLLYQNDFQFLKDVLQSV-DAKVIAEGNVITPDMYKRVMDLGVHCSVVGGAI 207 (222)
T ss_dssp HHHHHTTCSEEECTTTTSSTTS-T---TCCTTHHHHHHHHHHHHHC-CSEEEEESSCCSHHHHHHHHHTTCSEEEECHHH
T ss_pred HHHHHcCCCeEEEeccCCcccc-c---CccchhhHHHHHHHHHhcC-CCcEEEeCCCCCHHHHHHHHHcCCCEEEEchhh
Confidence 2345799999987544321111 0 0112233467788887765 999999999999999999999999999999976
Q ss_pred HhCCchhHHhHHHh
Q 020423 300 YQNPWYTLGHVDTA 313 (326)
Q Consensus 300 l~dP~l~~~~i~~~ 313 (326)
.+|+.+.+++.+.
T Consensus 208 -~rp~~~~~~f~~~ 220 (222)
T d1y0ea_ 208 -TRPKEITKRFVQV 220 (222)
T ss_dssp -HCHHHHHHHHHHT
T ss_pred -cCHHHHHHHHHHH
Confidence 5898877766553
|
| >d1zfja1 c.1.5.1 (A:2-94,A:221-492) Inosine monophosphate dehydrogenase (IMPDH) {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.08 E-value=5.1e-10 Score=103.65 Aligned_cols=197 Identities=15% Similarity=0.122 Sum_probs=120.8
Q ss_pred cCeecCCcEEEccCCCCChHHHHHHHHHcCCCcEEEecceeeccccccccchhhhhhc-CCCCC-cEEEEecCCCHHHHH
Q 020423 63 ARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAF-SPEQH-PIVLQIGGSNLDNLA 140 (326)
Q Consensus 63 g~~~l~nrivlAPM~~~s~~~~r~~~~~~Gg~gli~te~~~~~~~~~~~~~~~~~~~~-~~~~~-piivQL~g~~~~~f~ 140 (326)
.++.++-||+.|||-++++..+.....+.||.|.+--++...+ +.+..... ...+. .+.+.+ +..++.+.
T Consensus 39 ~~~~~~iPIIsA~MDtV~~~~mA~~ls~~Gglgvlhr~~~~~e-------~~~~~~~~~~~~~~~~v~aav-Gv~~~~~e 110 (365)
T d1zfja1 39 DNLTLNIPIITAAMDTVTGSKMAIAIARAGGLGVIHKNMSITE-------QAEEVRKVKRSEGRLLVAAAV-GVTSDTFE 110 (365)
T ss_dssp TTEEESSSEEECCCTTTCSHHHHHHHHHTTCEEEECCSSCHHH-------HHHHHHHHHHHTSCBCCEEEE-CSSTTHHH
T ss_pred CCcccCCCEEECCCCCcCCHHHHHHHHHCCCceEEcCccCHHH-------HHHHhhhhhhccCceEEEEEe-ccCchHHH
Confidence 3577888999999999999999988888898876532221110 11111111 11122 233443 33444444
Q ss_pred HHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC-CCcEEEEeccCCCCCccHHHHHHHHH
Q 020423 141 KATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFIY 219 (326)
Q Consensus 141 ~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~-~~pv~vK~r~g~~~~~~~~e~~~~ia 219 (326)
+ +..+.++|.|.|-|..+.. ..+.+.+.++.+|+.. +.++.+. + ..+.+. +
T Consensus 111 r-~~~l~~agvd~ivID~A~G----------------~s~~~~~~i~~ik~~~~~~~iIaG---N---V~T~e~-----a 162 (365)
T d1zfja1 111 R-AEALFEAGADAIVIDTAHG----------------HSAGVLRKIAEIRAHFPNRTLIAG---N---IATAEG-----A 162 (365)
T ss_dssp H-HHHHHHHTCSEEEECCSCT----------------TCHHHHHHHHHHHHHCSSSCEEEE---E---ECSHHH-----H
T ss_pred H-HHHHHHcCCCEEEEECCcc----------------cccchhHHHHHHHhhCCCcceeec---c---cccHHH-----H
Confidence 4 4555678999987753211 2445566777777765 5666653 1 123322 2
Q ss_pred HHhhhCCccEEEEecCCc------ccCCCCcCCcCCCCCccHHHH---HHHHhcCCCceEEEeCCCCCHHHHHHHHHhCC
Q 020423 220 KVSSLSPTRHFIIHSRKA------LLNGISPAENRTIPPLKYEYY---YALLRDFPDLTFTLNGGINTVDEVNAALRKGA 290 (326)
Q Consensus 220 ~~le~~Gvd~I~v~~~~~------~~~g~~~~~~~~~~~~~~~~i---~~i~~~~~~iPVIa~GgI~s~~da~~~l~~Ga 290 (326)
+.|.++|+|.|-|-.+.. ...|. ..|. +..+ ++..++. ++|||+-|||.+.-|+.++|..||
T Consensus 163 ~~L~~aGaD~VkVGiG~Gs~CTTr~~tGv------GvPq--~sai~~~~~~~~~~-~~~iIADGGi~~~GDi~KAla~GA 233 (365)
T d1zfja1 163 RALYDAGVDVVKVGIGPGSICTTRVVAGV------GVPQ--VTAIYDAAAVAREY-GKTIIADGGIKYSGDIVKALAAGG 233 (365)
T ss_dssp HHHHHTTCSEEEECSSCCTTBCHHHHTCC------CCCH--HHHHHHHHHHHHHT-TCEEEEESCCCSHHHHHHHHHTTC
T ss_pred HHHHhcCCceEEeeecccccccCcceeee------eccc--hhHHHHHHHHHHhC-CceEEecCCcCcchhhhhhhhccC
Confidence 233469999999864321 01111 1122 3333 3334454 899999999999999999999999
Q ss_pred ChhhhhHHHHhCCc
Q 020423 291 HHVMVGRAAYQNPW 304 (326)
Q Consensus 291 D~V~iGRall~dP~ 304 (326)
|+||+|+.|-...+
T Consensus 234 d~VMlG~~lAg~~E 247 (365)
T d1zfja1 234 NAVMLGSMFAGTDE 247 (365)
T ss_dssp SEEEESTTTTTBSS
T ss_pred CEEEecchhccccC
Confidence 99999998876544
|
| >d1yxya1 c.1.2.5 (A:4-233) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: NanE-like domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.05 E-value=6.5e-10 Score=96.09 Aligned_cols=85 Identities=13% Similarity=0.028 Sum_probs=59.4
Q ss_pred HHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHH
Q 020423 220 KVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAA 299 (326)
Q Consensus 220 ~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRal 299 (326)
+..+++|+|+|.++++.....+ . ...+..+. +.+..+. .++|||++|||+|++|+.++++.|||+|+||+++
T Consensus 144 ~~a~~~Gad~i~~~~~~~~~~~--~----~~~~~~~~-~~~~~~~-~~ipvia~GGI~t~~d~~~al~~GAd~V~vGsAi 215 (230)
T d1yxya1 144 LVAHQAGIDFVGTTLSGYTPYS--R----QEAGPDVA-LIEALCK-AGIAVIAEGKIHSPEEAKKINDLGVAGIVVGGAI 215 (230)
T ss_dssp HHHHHTTCSEEECTTTTSSTTS--C----CSSSCCHH-HHHHHHH-TTCCEEEESCCCSHHHHHHHHTTCCSEEEECHHH
T ss_pred HHHHhcCCCEEEeecccccccc--c----ccchHHHH-HHHHHhc-CCCeEEEeCCCCCHHHHHHHHHcCCCEEEEChhh
Confidence 3456799999998876532111 1 11122233 3344444 4899999999999999999999999999999986
Q ss_pred HhCCchhHHhHHHh
Q 020423 300 YQNPWYTLGHVDTA 313 (326)
Q Consensus 300 l~dP~l~~~~i~~~ 313 (326)
. +|....+++.+.
T Consensus 216 ~-~p~~i~~~~~~~ 228 (230)
T d1yxya1 216 T-RPKEIAERFIEA 228 (230)
T ss_dssp H-CHHHHHHHHHHH
T ss_pred c-CHHHHHHHHHHH
Confidence 5 888666655543
|
| >d1p4ca_ c.1.4.1 (A:) Membrane-associated (S)-mandelate dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Membrane-associated (S)-mandelate dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=99.02 E-value=2.2e-09 Score=98.86 Aligned_cols=214 Identities=13% Similarity=0.036 Sum_probs=129.3
Q ss_pred ccccccCeecCCcEEEccCCCCC------hHHHHHHHHHcCCCcEEEecceeeccccccccchhhhhhcCCCCCcEEEEe
Q 020423 58 KAEMVARQYLPPWFSVAPMMDWT------DNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQI 131 (326)
Q Consensus 58 ~p~~ig~~~l~nrivlAPM~~~s------~~~~r~~~~~~Gg~gli~te~~~~~~~~~~~~~~~~~~~~~~~~~piivQL 131 (326)
...++-|.++..||+.+||++.+ +..+...+.+.| .++....+.. ...+...+. .......|.
T Consensus 59 lst~~lGk~ls~Pi~Iapmtgg~~~~~~~n~~lA~aA~~~~-i~~~~gs~s~-----~~~~e~~~~-----~~~~~~~~~ 127 (353)
T d1p4ca_ 59 LQAEVLGKRQSMPLLIGPTGLNGALWPKGDLALARAATKAG-IPFVLSTASN-----MSIEDLARQ-----CDGDLWFQL 127 (353)
T ss_dssp CCEEETTEEESSSEEECCCSCGGGTSTTHHHHHHHHHHHHT-CCEEECTTCS-----SCHHHHHHH-----CCSCEEEEE
T ss_pred CceEECCcCccCceeeccccccccccchhhHHHHHHHHHhh-cccccccccc-----ccchhHHHh-----cCCceeeee
Confidence 34778889999999999998743 334445555555 5544332211 001111111 234566676
Q ss_pred cCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCccc---------------------------CCCC--ccc---cccCCH
Q 020423 132 GGSNLDNLAKATELANAYNYDEINLNCGCPSPKVA---------------------------GHGC--FGV---SLMLDP 179 (326)
Q Consensus 132 ~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~---------------------------r~d~--yGg---sl~~r~ 179 (326)
...+........++++.+|++.+.++...|..... .... ... .-+.++
T Consensus 128 ~~~~~~~~~~l~~~~~~~g~~~l~~~vd~~~~g~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (353)
T d1p4ca_ 128 YVIHREIAQGMVLKALHTGYTTLVLTTDVAVNGYRERDLHNRFKIPPFLTLKNFEGIDLGKMDKANLEMQAALMSRQMDA 207 (353)
T ss_dssp CCSSHHHHHHHHHHHHHTTCCEEEEECSCSSCCCCHHHHHHTCCCCTTCCCGGGTTCCCSCCSSTTTTTHHHHTSSCCCT
T ss_pred ccccHHHHHHhHHHHHHcCCcceeeeccccccCcchhhhhhhhcccchhhhhhhhhhccccccccccchhHHHHHhccCC
Confidence 66677666777788889999999987664421000 0000 000 001112
Q ss_pred HHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHH
Q 020423 180 KFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYY 259 (326)
Q Consensus 180 ~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~ 259 (326)
.+..+-++.+++..+.|+.+|--.+ .++ +....+.|+|.+.++......-. .. +..++.+.
T Consensus 208 ~~~~~~i~~l~~~~~~~i~~kgv~~------~~~-----~~~a~~~g~~~~~~s~~gg~~~~-------~~-~~~~~~l~ 268 (353)
T d1p4ca_ 208 SFNWEALRWLRDLWPHKLLVKGLLS------AED-----ADRCIAEGADGVILSNHGGRQLD-------CA-ISPMEVLA 268 (353)
T ss_dssp TCCHHHHHHHHHHCCSEEEEEEECC------HHH-----HHHHHHTTCSEEEECCGGGTSCT-------TC-CCGGGTHH
T ss_pred CCCHHHHHHHHhccccchhhhcchh------hhh-----HHHHHhcCCchhhhccccccccc-------cc-ccchhccc
Confidence 3445667888888888998884433 222 12234689999988642211100 11 11244444
Q ss_pred HHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhC
Q 020423 260 ALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN 302 (326)
Q Consensus 260 ~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~d 302 (326)
++... .++|||+.|||+++-|+.++|..|||+|++||++|.-
T Consensus 269 ~i~~~-~~~~viasGGIR~G~Dv~KALaLGAd~vgigrp~L~~ 310 (353)
T d1p4ca_ 269 QSVAK-TGKPVLIDSGFRRGSDIVKALALGAEAVLLGRATLYG 310 (353)
T ss_dssp HHHHH-HCSCEEECSSCCSHHHHHHHHHTTCSCEEESHHHHHH
T ss_pred chhcc-cccceeecCCcCchHHHHHHHHcCCCEEEEcHHHHHH
Confidence 55444 3889999999999999999999999999999999853
|
| >d1goxa_ c.1.4.1 (A:) Glycolate oxidase {Spinach (Spinacia oleracea) [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Glycolate oxidase species: Spinach (Spinacia oleracea) [TaxId: 3562]
Probab=99.01 E-value=7.5e-09 Score=95.66 Aligned_cols=212 Identities=14% Similarity=0.109 Sum_probs=127.6
Q ss_pred ccccCeecCCcEEEccCCCC----Ch--HHHHHHHHHcCCCcEEEecceeeccccccccchhhhhhcCCCCCcEEEEecC
Q 020423 60 EMVARQYLPPWFSVAPMMDW----TD--NHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGG 133 (326)
Q Consensus 60 ~~ig~~~l~nrivlAPM~~~----s~--~~~r~~~~~~Gg~gli~te~~~~~~~~~~~~~~~~~~~~~~~~~piivQL~g 133 (326)
.++=|.+++-|++.+||++. .+ ..+...+.+.| ..+...-+.. .. .+.... ....+...|++.
T Consensus 62 t~~lG~~~~~P~~IspMtgg~~~~~~~e~~lA~aA~~~g-i~~~~~s~s~-----~s---~~~~~~--~~~~~~~~~~~~ 130 (359)
T d1goxa_ 62 TTILGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAG-TIMTLSSWAT-----SS---VEEVAS--TGPGIRFFQLYV 130 (359)
T ss_dssp EEETTEEESSSEEECCCSCGGGTCTTHHHHHHHHHHHTT-CCEEECTTCS-----SC---HHHHHT--TCCCCEEEEECC
T ss_pred eeECCcccCCceeeccccccccCCCchHHHhhhhHHhhC-Cccccccccc-----cc---chhhHH--hcCCCccccccc
Confidence 55678899999999999863 22 23344444444 5544333221 11 111111 134678889875
Q ss_pred C-CHHHHHHHHHHHHHCCCCEEEecCCCCCCccc----CCC----------CccccccCC------------------HH
Q 020423 134 S-NLDNLAKATELANAYNYDEINLNCGCPSPKVA----GHG----------CFGVSLMLD------------------PK 180 (326)
Q Consensus 134 ~-~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~----r~d----------~yGgsl~~r------------------~~ 180 (326)
. +.........++..+|++.+-++...|..... ++. .+-...... +.
T Consensus 131 ~~~~~~~~~l~~~~~~a~~~~~~~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (359)
T d1goxa_ 131 YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPFLTLKNFEGIDLGKMDKANDSGLSSYVAGQIDRS 210 (359)
T ss_dssp BSSHHHHHHHHHHHHHTTCCEEEEECSCSSCCCCHHHHHTTCCCCTTCCCGGGSSSCCC---------HHHHHHHTBCTT
T ss_pred chhHHHHHHHHHHHHHhhcccccccccchhhhhhhhhccccccCCcccchhhhhhhccccCcccccccHHHHHHhhcCCC
Confidence 4 45666677889999999999888764432100 000 000000000 01
Q ss_pred HHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEec--CCcccCCCCcCCcCCCCCccHHHH
Q 020423 181 FVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHS--RKALLNGISPAENRTIPPLKYEYY 258 (326)
Q Consensus 181 ~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~--~~~~~~g~~~~~~~~~~~~~~~~i 258 (326)
+..+.++.+++..+.|+.+|--.+ .++. ....+.|+|.+.++. +..... .+...+.+
T Consensus 211 ~~~~~v~~l~~~~~~~~~~kg~~~------~~da-----~~a~~~g~~~~~vsnhggr~ld~----------~~~~~~~l 269 (359)
T d1goxa_ 211 LSWKDVAWLQTITSLPILVKGVIT------AEDA-----RLAVQHGAAGIIVSNHGARQLDY----------VPATIMAL 269 (359)
T ss_dssp CCHHHHHHHHHHCCSCEEEECCCS------HHHH-----HHHHHTTCSEEEECCGGGTSSTT----------CCCHHHHH
T ss_pred CCHHHHHHHHhhcccceeeecccc------hHHH-----HHHHHccccceeccccccccccc----------ccchhhhc
Confidence 112336777777788998884432 2222 223468999999863 221111 11225555
Q ss_pred HHHHhcC-CCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhCC
Q 020423 259 YALLRDF-PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNP 303 (326)
Q Consensus 259 ~~i~~~~-~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~dP 303 (326)
..+++.. .++|||+.|||+++.|+.++|..|||+|.+||++|.-+
T Consensus 270 ~~i~~~~~~~~~iiadGGIR~G~Di~KALaLGAd~vgigrp~L~~l 315 (359)
T d1goxa_ 270 EEVVKAAQGRIPVFLDGGVRRGTDVFKALALGAAGVFIGRPVVFSL 315 (359)
T ss_dssp HHHHHHTTTSSCEEEESSCCSHHHHHHHHHHTCSEEEECHHHHHHH
T ss_pred hhhhhccCCccceeeccCcCcHHHHHHHHHcCCCEEEEcHHHHHHH
Confidence 5555544 37999999999999999999999999999999988543
|
| >d1kbia1 c.1.4.1 (A:98-511) Flavocytochrome b2, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Flavocytochrome b2, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.97 E-value=1.4e-08 Score=95.54 Aligned_cols=219 Identities=11% Similarity=0.073 Sum_probs=124.5
Q ss_pred ccccccCeecCCcEEEccCCCC-------ChHHHHHHHHHcCCCcEEEecceeeccccccccchhhhhhc-CCCCCcEEE
Q 020423 58 KAEMVARQYLPPWFSVAPMMDW-------TDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAF-SPEQHPIVL 129 (326)
Q Consensus 58 ~p~~ig~~~l~nrivlAPM~~~-------s~~~~r~~~~~~Gg~gli~te~~~~~~~~~~~~~~~~~~~~-~~~~~piiv 129 (326)
...++-|.+++.||+.+||.+. .+...+. ++..++.+..+. ++... .......... .....+...
T Consensus 82 lst~~lG~~l~~P~~Isp~g~~~~~~~~~~~~~~A~-a~aa~~~~~~~~--ls~~~----~~~~~~~~~~a~~~~~~~~~ 154 (414)
T d1kbia1 82 ISTDMLGSHVDVPFYVSATALCKLGNPLEGEKDVAR-GCGQGVTKVPQM--ISTLA----SCSPEEIIEAAPSDKQIQWY 154 (414)
T ss_dssp CCEEETTEEESSSEEECCCSCGGGTCTTTTHHHHHH-HHHSSSSCCCEE--ECTTC----SSCHHHHHHTCCCSSCCEEE
T ss_pred CceeECCccCCCCEEEChhhhhcccCcchhHHHHHh-hHHHhhhccccc--ccccc----ccchHHHHHHhcCCccchhh
Confidence 3466778999999999999652 1222222 333332332111 11000 0011111111 123345778
Q ss_pred EecCC-CHHHHHHHHHHHHHCCCCEEEecCCCCCCccc----------------------CCCCccc--cc--cCCHHHH
Q 020423 130 QIGGS-NLDNLAKATELANAYNYDEINLNCGCPSPKVA----------------------GHGCFGV--SL--MLDPKFV 182 (326)
Q Consensus 130 QL~g~-~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~----------------------r~d~yGg--sl--~~r~~~l 182 (326)
|++.. +.+.-....++++++|++.+-++...|..... -.+..|. .+ +-++.+.
T Consensus 155 q~y~~~~~~~~~~l~~ra~~ag~~al~~tvD~~~~g~re~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~ 234 (414)
T d1kbia1 155 QLYVNSDRKITDDLVKNVEKLGVKALFVTVDAPSLGQREKDMKLKFSNTKAGPKAMKKTNVEESQGASRALSKFIDPSLT 234 (414)
T ss_dssp EECCCSSHHHHHHHHHHHHHHTCSCEEEECSCSSCCCCHHHHHHHHTTCC-------CCCCSSCCCGGGGCBTTBCTTCC
T ss_pred cccccccHHHHHHHHHHHHHcCCcccccccccccccccHHHHHhcccccccchhhhhcccccccccHHHHHHHhcccCCC
Confidence 88754 56666677788999999999888765531100 0000010 01 1112233
Q ss_pred HHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHH-
Q 020423 183 GEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYAL- 261 (326)
Q Consensus 183 ~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i- 261 (326)
-+.++.++..++.|+.+|--.. .++. ....+.|+|.+.++....... + ..+. ....+.++
T Consensus 235 ~~~i~~i~~~~~~~~i~kgi~~------~~da-----~~~~~~G~~~i~vsnhggr~~-----d--~~~~-~~~~l~~i~ 295 (414)
T d1kbia1 235 WKDIEELKKKTKLPIVIKGVQR------TEDV-----IKAAEIGVSGVVLSNHGGRQL-----D--FSRA-PIEVLAETM 295 (414)
T ss_dssp HHHHHHHHHHCSSCEEEEEECS------HHHH-----HHHHHTTCSEEEECCTTTTSS-----T--TCCC-HHHHHHHHH
T ss_pred HHHHHHHhccCCceEEeeccch------hHHH-----HHHHhcCCcceeecccccccc-----c--cccc-cccchhhhh
Confidence 4678888888899999984432 2222 223469999999975322110 0 1111 12222222
Q ss_pred --Hh-c--CCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhC
Q 020423 262 --LR-D--FPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN 302 (326)
Q Consensus 262 --~~-~--~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~d 302 (326)
.+ . ..++|||+.|||+++-|+.++|..|||+|+|||++|.-
T Consensus 296 ~~~~~~~v~~~~~viadGGIR~G~DVaKALALGAdaVgigrp~L~~ 341 (414)
T d1kbia1 296 PILEQRNLKDKLEVFVDGGVRRGTDVLKALCLGAKGVGLGRPFLYA 341 (414)
T ss_dssp HHHHTTTCBTTBEEEEESSCCSHHHHHHHHHHTCSEEEECHHHHHH
T ss_pred hhhhhhccCCceeEEecCCcCcHHHHHHHHHcCCCEEEEcHHHHHH
Confidence 22 1 24699999999999999999999999999999999853
|
| >d1pvna1 c.1.5.1 (A:2-99,A:231-494) Inosine monophosphate dehydrogenase (IMPDH) {Tritrichomonas foetus [TaxId: 5724]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Tritrichomonas foetus [TaxId: 5724]
Probab=98.95 E-value=9.5e-09 Score=95.03 Aligned_cols=201 Identities=12% Similarity=0.029 Sum_probs=119.1
Q ss_pred CccccccCeecCCcEEEccCCCCChHHHHHHHHHcCCCcEEEecceeeccccccccchhhhhhcCCCCCcEEEEecCCCH
Q 020423 57 TKAEMVARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSNL 136 (326)
Q Consensus 57 ~~p~~ig~~~l~nrivlAPM~~~s~~~~r~~~~~~Gg~gli~te~~~~~~~~~~~~~~~~~~~~~~~~~piivQL~g~~~ 136 (326)
|..-+.+++.++-||+-|||-++++..+.....+.||.|.+ .-....+ ++.....................+
T Consensus 39 ~~~~~~~~i~l~iPIIsAnMDTVt~~~mA~~la~~Gglgvi-hR~~~ie------~~~~~~~~~~~~~~~~~~~~~~~~- 110 (362)
T d1pvna1 39 FQKGQQSEINLKIPLVSAIMQSVSGEKMAIALAREGGISFI-FGSQSIE------SQAAMVHAVKNFRYLVGAGINTRD- 110 (362)
T ss_dssp EETTSCCSCEESSSEEECSCTTTCSHHHHHHHHHTTCEEEE-CCSSCHH------HHHHHHHHHHTCCCCCEEEECSSS-
T ss_pred eccccccccccCCcEEecCCCCcCCHHHHHHHHHCCCEEEE-eecCCHH------HHHHHhhhhhhcccccccccchhh-
Confidence 44455678888889999999999999998877778887765 1111111 111111111122222222322222
Q ss_pred HHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC--CCcEEEEeccCCCCCccHHHH
Q 020423 137 DNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYNQL 214 (326)
Q Consensus 137 ~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~--~~pv~vK~r~g~~~~~~~~e~ 214 (326)
+.+-++.+.++|+|.+-|.... + | .+.+.+.++.+++.. ..||.+. +..+.+..
T Consensus 111 --~~~~~~~L~~ag~d~i~IDvAh--------G-~-------~~~v~~~i~~ir~~~~~~~~IiAG------NVaT~e~~ 166 (362)
T d1pvna1 111 --FRERVPALVEAGADVLCIDSSD--------G-F-------SEWQKITIGWIREKYGDKVKVGAG------NIVDGEGF 166 (362)
T ss_dssp --HHHHHHHHHHHTCSEEEECCSC--------C-C-------BHHHHHHHHHHHHHHGGGSCEEEE------EECSHHHH
T ss_pred --hHHHHHHHhhcCceEEeechhc--------c-c-------hhHHHHHHHHHHHhhccceeeecc------cccCHHHH
Confidence 3344455677889998886421 1 1 234556677776543 4677664 22233322
Q ss_pred HHHHHHHhhhCCccEEEEecCCc------ccCCCCcCCcCCCCCccHHHHHHH---Hhc-----CCCceEEEeCCCCCHH
Q 020423 215 CDFIYKVSSLSPTRHFIIHSRKA------LLNGISPAENRTIPPLKYEYYYAL---LRD-----FPDLTFTLNGGINTVD 280 (326)
Q Consensus 215 ~~~ia~~le~~Gvd~I~v~~~~~------~~~g~~~~~~~~~~~~~~~~i~~i---~~~-----~~~iPVIa~GgI~s~~ 280 (326)
+.|.++|+|.|-|--+.. ...|.. .|. +..+.+. +++ ..++|||+-|||.++-
T Consensus 167 -----~~L~~aGaD~vkVGIG~Gs~CTTr~~tGvG------~Pq--~sAv~e~a~~~~~~~~~~~~~v~iiaDGGi~~~g 233 (362)
T d1pvna1 167 -----RYLADAGADFIKIGIGGGSICITREQKGIG------RGQ--ATAVIDVVAERNKYFEETGIYIPVCSDGGIVYDY 233 (362)
T ss_dssp -----HHHHHHTCSEEEECSSCSTTBCHHHHTCBC------CCH--HHHHHHHHHHHHHHHHHHSEECCEEEESCCCSHH
T ss_pred -----HHHHHhCCcEEEecccccccccchhhhccC------Cch--HHHHHHHHHHHHHhhhhcccCCceeeccccCccc
Confidence 223468999999853321 111221 122 3333332 221 1368999999999999
Q ss_pred HHHHHHHhCCChhhhhHHHHhC
Q 020423 281 EVNAALRKGAHHVMVGRAAYQN 302 (326)
Q Consensus 281 da~~~l~~GaD~V~iGRall~d 302 (326)
|+.++|..|||+||+|..|-..
T Consensus 234 di~KAla~GAd~VM~G~~lAg~ 255 (362)
T d1pvna1 234 HMTLALAMGADFIMLGRYFARF 255 (362)
T ss_dssp HHHHHHHTTCSEEEESHHHHTB
T ss_pred ceeEEEEEeccceeehhhhhcc
Confidence 9999999999999999988754
|
| >d2cu0a1 c.1.5.1 (A:3-96,A:207-480) Inosine monophosphate dehydrogenase (IMPDH) {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.76 E-value=3.6e-08 Score=91.20 Aligned_cols=198 Identities=13% Similarity=0.122 Sum_probs=116.3
Q ss_pred cCeecCCcEEEccCCCCChHHHHHHHHHcCCCcEEEecceeeccccccccchhh---hh-hcCCCCCcEEEEecCCCHHH
Q 020423 63 ARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDR---FL-AFSPEQHPIVLQIGGSNLDN 138 (326)
Q Consensus 63 g~~~l~nrivlAPM~~~s~~~~r~~~~~~Gg~gli~te~~~~~~~~~~~~~~~~---~~-~~~~~~~piivQL~g~~~~~ 138 (326)
+++.++-||+-|||-++++..+.....+.||.|.+-- ....+........... +. .+.++...+.+-.. ..+++
T Consensus 40 ~~~~l~iPIiss~MDtV~~~~mA~~la~~Gglgvlhr-~~~~e~~~~~v~~v~~~e~~~~~~~d~~~~~~v~~~-~~~~~ 117 (368)
T d2cu0a1 40 PNVKLNIPILSAAMDTVTEWEMAVAMAREGGLGVIHR-NMGIEEQVEQVKRVKRAEKYKNAVRDENGELLVAAA-VSPFD 117 (368)
T ss_dssp TTEEESSSEEECCCTTTCSHHHHHHHHHTTCEEEECS-SSCHHHHHHHHHHHHTCCCCTTCCBCTTSCBCCEEE-ECTTC
T ss_pred CCcccCCCEEeCCCCCcCCHHHHHHHHHCCCeeEecc-cCCHHHHHHHHHhhhhhhhccccccccCccEEEEec-cChHH
Confidence 4677888999999999999999888777888775532 1111111100000000 00 01112222222221 12344
Q ss_pred HHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHH
Q 020423 139 LAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFI 218 (326)
Q Consensus 139 f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~i 218 (326)
+.+ +..+.++|.|.|-|.....+ .+...+.++.+++..+.|+.+. + ..+.+.
T Consensus 118 ~~r-~~~l~~aGvd~ivID~A~Gh----------------~~~~i~~lK~ir~~~~~~vIaG---N---VaT~e~----- 169 (368)
T d2cu0a1 118 IKR-AIELDKAGVDVIVVDTAHAH----------------NLKAIKSMKEMRQKVDADFIVG---N---IANPKA----- 169 (368)
T ss_dssp HHH-HHHHHHTTCSEEEEECSCCC----------------CHHHHHHHHHHHHTCCSEEEEE---E---ECCHHH-----
T ss_pred HHH-HHHHHHcCCCEEEecCcccc----------------hhhhhhhhhhhhhhcccceeec---c---ccCHHH-----
Confidence 444 44567889999988753222 2335567788888877777653 1 122221
Q ss_pred HHHhhhCCccEEEEecCCc------ccCCCCcCCcCCCCCccHHHHHHH---HhcCCCceEEEeCCCCCHHHHHHHHHhC
Q 020423 219 YKVSSLSPTRHFIIHSRKA------LLNGISPAENRTIPPLKYEYYYAL---LRDFPDLTFTLNGGINTVDEVNAALRKG 289 (326)
Q Consensus 219 a~~le~~Gvd~I~v~~~~~------~~~g~~~~~~~~~~~~~~~~i~~i---~~~~~~iPVIa~GgI~s~~da~~~l~~G 289 (326)
+ +...|+|.|-|--+.. ...|.. .| .+..+.+. .+.. ++|||+-|||.+.-|+.++|..|
T Consensus 170 ~--~~l~gaD~VkVGIG~Gs~CTTr~~tGvG------~P--q~sAi~e~~~~~~~~-~~~iiADGGi~~~Gdi~KAla~G 238 (368)
T d2cu0a1 170 V--DDLTFADAVKVGIGPGSICTTRIVAGVG------VP--QITAVAMVADRAQEY-GLYVIADGGIRYSGDIVKAIAAG 238 (368)
T ss_dssp H--TTCTTSSEEEECSSCSTTBCHHHHTCCC------CC--HHHHHHHHHHHHHHH-TCEEEEESCCCSHHHHHHHHHTT
T ss_pred H--HhhhcCcceeecccCcccccchhhcccc------cc--hHHHHHHHHHHHhcc-CCeeEecCCCCcCChhheeeeec
Confidence 1 2347999998842211 111211 11 23433333 3333 79999999999999999999999
Q ss_pred CChhhhhHHHHh
Q 020423 290 AHHVMVGRAAYQ 301 (326)
Q Consensus 290 aD~V~iGRall~ 301 (326)
||+||+|+.|-.
T Consensus 239 Ad~VMlG~~lAg 250 (368)
T d2cu0a1 239 ADAVMLGNLLAG 250 (368)
T ss_dssp CSEEEESTTTTT
T ss_pred cceeeccchhcc
Confidence 999999998754
|
| >d1wv2a_ c.1.31.1 (A:) Thiazole biosynthesis protein ThiG {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: ThiG-like family: ThiG-like domain: Thiazole biosynthesis protein ThiG species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.68 E-value=5.9e-06 Score=70.94 Aligned_cols=218 Identities=12% Similarity=0.097 Sum_probs=123.1
Q ss_pred ccccccCeecCCcEEEccCCCCCh-HHHHHHHHHcCCCcEEEecceeeccccccccchhhhhhc-CCCCCcEEEEec-CC
Q 020423 58 KAEMVARQYLPPWFSVAPMMDWTD-NHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAF-SPEQHPIVLQIG-GS 134 (326)
Q Consensus 58 ~p~~ig~~~l~nrivlAPM~~~s~-~~~r~~~~~~Gg~gli~te~~~~~~~~~~~~~~~~~~~~-~~~~~piivQL~-g~ 134 (326)
+|++|++.+++.|+++.- ..+.+ ........+. |+.++..-. .-..+. .......+++. ...+..+..|-. +.
T Consensus 1 ~Pl~I~~~~f~SRLilGT-Gky~s~~~~~~ai~aS-gaeiVTVAv-RR~~~~-~~~~~~~l~~~i~~~~~~~LPNTAGc~ 76 (243)
T d1wv2a_ 1 TPFVIAGRTYGSRLLVGT-GKYKDLDETRRAIEAS-GAEIVTVAV-RRTNIG-QNPDEPNLLDVIPPDRYTILPNTAGCY 76 (243)
T ss_dssp CCEEETTEEESCCEEECC-SCSSSHHHHHHHHHHS-CCSEEEEEG-GGCCC--------------CTTTSEEEEECTTCC
T ss_pred CCeEECCEEEEcceEEEc-CCCCCHHHHHHHHHHh-CCCEEEEEc-cccccC-CCcccchHHHhccccCeeecccccccc
Confidence 699999999999998842 23444 4444444544 444432221 110111 11111223222 223334556654 46
Q ss_pred CHHHHHHHHHHHHHCC--CCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHH
Q 020423 135 NLDNLAKATELANAYN--YDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYN 212 (326)
Q Consensus 135 ~~~~f~~aA~~a~~aG--~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~ 212 (326)
+.++-.+.|+.+++++ -+.|.+..- ..+. .++.++-...+..+.+.+ -++-+..-+.. | .
T Consensus 77 taeeAv~~A~larE~~~~~~~iKLEVi-------~d~~---~L~Pd~~etl~Aa~~Lv~-egF~Vlpy~~~---D---~- 138 (243)
T d1wv2a_ 77 DAVEAVRTCRLARELLDGHNLVKLEVL-------ADQK---TLFPNVVETLKAAEQLVK-DGFDVMVYTSD---D---P- 138 (243)
T ss_dssp SHHHHHHHHHHHHTTTTSCCEEEECCB-------SCTT---TCCBCHHHHHHHHHHHHT-TTCEEEEEECS---C---H-
T ss_pred cHHHHHHHHHHHHHHhCCCceEEEeee-------cccc---ccCCcHHHHHHHHHHhhc-CceEEEeccCC---C---H-
Confidence 8999999999999974 478888532 1111 123444444444444322 24555443322 1 1
Q ss_pred HHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCCh
Q 020423 213 QLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHH 292 (326)
Q Consensus 213 e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~ 292 (326)
.+++.+++.|+..+---+..- |. .....+...+..+++. .++|||.-+||.+++|+..+++.|||+
T Consensus 139 ----v~ak~le~~Gc~~vMplgsPI---Gs------g~Gi~n~~~l~~i~~~-~~vpvivdAGIg~psdaa~AMElG~dg 204 (243)
T d1wv2a_ 139 ----IIARQLAEIGCIAVMPLAGLI---GS------GLGICNPYNLRIILEE-AKVPVLVDAGVGTASDAAIAMELGCEA 204 (243)
T ss_dssp ----HHHHHHHHSCCSEEEECSSST---TC------CCCCSCHHHHHHHHHH-CSSCBEEESCCCSHHHHHHHHHHTCSE
T ss_pred ----HHHhHHHHcCceeeeeccccc---cc------ccccccHHHHHhcccc-CCcceEeecccCCHHHHHHHHHccCCE
Confidence 145677899998875332110 10 0011223444445544 599999999999999999999999999
Q ss_pred hhhhHHHHh--CCchhHHhHH
Q 020423 293 VMVGRAAYQ--NPWYTLGHVD 311 (326)
Q Consensus 293 V~iGRall~--dP~l~~~~i~ 311 (326)
|.+.++... ||-.+.+.++
T Consensus 205 VLvnsaIa~A~dP~~mA~A~~ 225 (243)
T d1wv2a_ 205 VLMNTAIAHAKDPVMMAEAMK 225 (243)
T ss_dssp EEESHHHHTSSSHHHHHHHHH
T ss_pred EEechHhhcCCCHHHHHHHHH
Confidence 999999875 5665554443
|
| >d1xm3a_ c.1.31.1 (A:) Thiazole biosynthesis protein ThiG {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: ThiG-like family: ThiG-like domain: Thiazole biosynthesis protein ThiG species: Bacillus subtilis [TaxId: 1423]
Probab=98.59 E-value=7.5e-06 Score=69.74 Aligned_cols=213 Identities=13% Similarity=0.122 Sum_probs=126.5
Q ss_pred ccccCeecCCcEEEccCCCC-ChHHHHHHHHHcCCCcEEEecceeeccccccccchhhhhh-cCCCCCcEEEEec-CCCH
Q 020423 60 EMVARQYLPPWFSVAPMMDW-TDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLA-FSPEQHPIVLQIG-GSNL 136 (326)
Q Consensus 60 ~~ig~~~l~nrivlAPM~~~-s~~~~r~~~~~~Gg~gli~te~~~~~~~~~~~~~~~~~~~-~~~~~~piivQL~-g~~~ 136 (326)
++||+.+++.|+++. -..+ |...+.....+.| +.++..-.=. ..+. +...+.+++ +...+..+..|=. +.+.
T Consensus 3 L~I~g~~f~SRLilG-TgkY~s~~~~~~ai~aSg-aeiVTVAlRR-~~~~--~~~~~~~l~~i~~~~~~lLPNTAGc~tA 77 (251)
T d1xm3a_ 3 LTIGGKSFQSRLLLG-TGKYPSFDIQKEAVAVSE-SDILTFAVRR-MNIF--EASQPNFLEQLDLSKYTLLPNTAGASTA 77 (251)
T ss_dssp EEETTEEESCCEEEE-CSCSSCHHHHHHHHHHHT-CSEEEEETTS-STTC---------CTTCCGGGSEEEEECTTCSSH
T ss_pred eEECCEEEEcceEEE-cCCCCCHHHHHHHHHHhC-CCEEEEEEee-ecCc--CCCCcchhhhccccceEEccchHHHhhH
Confidence 789999999999884 3345 4555555555555 5443322111 1111 111122333 2334455666754 4688
Q ss_pred HHHHHHHHHHHHCC-CCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHH
Q 020423 137 DNLAKATELANAYN-YDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLC 215 (326)
Q Consensus 137 ~~f~~aA~~a~~aG-~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~ 215 (326)
++-.+.|+.++|++ -|+|-|-. ...+. .|+-++....+..+.+.+. |+-|..-+.. | .
T Consensus 78 ~EAvr~A~lARE~~~t~~IKLEV-------i~D~~---~L~PD~~etl~Aae~Lv~e-GF~VlpY~~~---D---~---- 136 (251)
T d1xm3a_ 78 EEAVRIARLAKASGLCDMIKVEV-------IGCSR---SLLPDPVETLKASEQLLEE-GFIVLPYTSD---D---V---- 136 (251)
T ss_dssp HHHHHHHHHHHHTTCCSSEEECC-------BCCTT---TCCBCHHHHHHHHHHHHHT-TCCEEEEECS---C---H----
T ss_pred HHHHHHHHHHHHhcCCceEEEEE-------ecCCC---CcCCCHHHHHHHHHHHHhC-CcEEEEecCC---C---H----
Confidence 99999999999974 56776642 11121 2445555444444444322 5666554333 1 1
Q ss_pred HHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhh
Q 020423 216 DFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMV 295 (326)
Q Consensus 216 ~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~i 295 (326)
.+++.+++.|+..+---+..- |. .....+...++.++++ .++|||.-+||.++.|+..+++.|||+|.+
T Consensus 137 -v~ak~Le~~Gc~avMPlgsPI---GS------g~Gl~n~~~l~~i~~~-~~vPvIvDAGIG~pSdAa~AMElG~daVLv 205 (251)
T d1xm3a_ 137 -VLARKLEELGVHAIMPGASPI---GS------GQGILNPLNLSFIIEQ-AKVPVIVDAGIGSPKDAAYAMELGADGVLL 205 (251)
T ss_dssp -HHHHHHHHHTCSCBEECSSST---TC------CCCCSCHHHHHHHHHH-CSSCBEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred -HHHHHHHHcCChhHHHhhhhh---hc------CCCcCChHHHHHHHhc-CCccEEEecCCCCHHHHHHHHHccCCEEEe
Confidence 146778899998775322110 10 0112235556666666 499999999999999999999999999999
Q ss_pred hHHHHh--CCchhHHh
Q 020423 296 GRAAYQ--NPWYTLGH 309 (326)
Q Consensus 296 GRall~--dP~l~~~~ 309 (326)
.+|+-. ||-.+.+.
T Consensus 206 NTAIA~a~dPv~MA~A 221 (251)
T d1xm3a_ 206 NTAVSGADDPVKMARA 221 (251)
T ss_dssp SHHHHTSSSHHHHHHH
T ss_pred chhhhcCCCHHHHHHH
Confidence 999865 55544433
|
| >d1ea0a2 c.1.4.1 (A:423-1193) Alpha subunit of glutamate synthase, central and FMN domains {Azospirillum brasilense [TaxId: 192]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Alpha subunit of glutamate synthase, central and FMN domains species: Azospirillum brasilense [TaxId: 192]
Probab=98.58 E-value=8.4e-07 Score=87.81 Aligned_cols=113 Identities=15% Similarity=0.156 Sum_probs=76.4
Q ss_pred CHHHHHHHHHHHHhcC-CCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCc-CCCCCccH
Q 020423 178 DPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAEN-RTIPPLKY 255 (326)
Q Consensus 178 r~~~l~eiv~avr~~~-~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~-~~~~~~~~ 255 (326)
.++-+.+.+..+|+.. +.||.||+-.+. .+.++.. .+.++|+|+|+|+|.++..+. ++... .... ..|
T Consensus 554 siedL~~~I~~Lr~~~~~~pv~vKl~~~~----~~~~i~~----~v~ka~~D~I~IdG~eGGTGA-ap~~~~d~~G-lP~ 623 (771)
T d1ea0a2 554 SIEDLAQLIYDLKQINPDAKVTVKLVSRS----GIGTIAA----GVAKANADIILISGNSGGTGA-SPQTSIKFAG-LPW 623 (771)
T ss_dssp SHHHHHHHHHHHHHHCTTCEEEEEEECCT----THHHHHH----HHHHTTCSEEEEECTTCCCSS-EETTHHHHSC-CCH
T ss_pred CHHHHHHHHHHHHhcCCCCCEEEEECCcC----cHHHHHH----HHHhcCCCEEEEecCCCcccc-ccHHHhhcCC-cCH
Confidence 4888899999999866 899999987542 2333333 334689999999987653221 11000 0000 012
Q ss_pred H-HHH---H-HHhcC--CCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHH
Q 020423 256 E-YYY---A-LLRDF--PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAY 300 (326)
Q Consensus 256 ~-~i~---~-i~~~~--~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall 300 (326)
+ .+. + +.+.- -+|.+++.||+.++.|+.+++..|||.|.+||++|
T Consensus 624 ~~~l~~~~~~L~~~glr~~V~l~a~Ggl~t~~Dv~ka~aLGAD~v~~gt~~m 675 (771)
T d1ea0a2 624 EMGLSEVHQVLTLNRLRHRVRLRTDGGLKTGRDIVIAAMLGAEEFGIGTASL 675 (771)
T ss_dssp HHHHHHHHHHHHTTTCTTTSEEEEESSCCSHHHHHHHHHTTCSEEECCHHHH
T ss_pred HHHHHHHHHHHHHcCCCCceEEEEeCCCCCHHHHHHHHHhCCCchHHhHHHH
Confidence 2 122 2 22221 26999999999999999999999999999999987
|
| >d1znna1 c.1.2.6 (A:18-271) Pyridoxal biosynthesis lyase PdxS {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: PdxS-like domain: Pyridoxal biosynthesis lyase PdxS species: Bacillus stearothermophilus [TaxId: 1422]
Probab=98.28 E-value=7e-06 Score=69.64 Aligned_cols=165 Identities=20% Similarity=0.187 Sum_probs=103.5
Q ss_pred HHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHH
Q 020423 140 AKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIY 219 (326)
Q Consensus 140 ~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia 219 (326)
.+.|+.+.++|+-.|---=.-|.. .|.+. |-+-+.+|+.+.|++++ +.+|+..|.|+|-. . + +
T Consensus 11 ~eqA~iAe~aGAvaVmaLervpad--iR~~G-GvaRm~dp~~i~ei~~~----vsipvmak~righ~----~----e--a 73 (254)
T d1znna1 11 AEQAKIAEAAGAVAVMALERVPAD--IRAAG-GVARMADPTVIEEVMNA----VSIPVMAKVRIGHY----V----E--A 73 (254)
T ss_dssp HHHHHHHHHHTCSEEEECC-----------C-CCCCCCCHHHHHHHHHH----CSSCEEEEEETTCH----H----H--H
T ss_pred HHHHHHhhccCceeEeeeccCCHH--HHhcC-CcccCCCHHHHHHHHHh----cccccccccCCCch----H----H--H
Confidence 356788999998776433234442 34454 66777899988888776 47999999999731 1 1 4
Q ss_pred HHhhhCCccEEEEecC----C-------ccc---------------------------CCCCcCCc--------------
Q 020423 220 KVSSLSPTRHFIIHSR----K-------ALL---------------------------NGISPAEN-------------- 247 (326)
Q Consensus 220 ~~le~~Gvd~I~v~~~----~-------~~~---------------------------~g~~~~~~-------------- 247 (326)
++|++.|+|++.=+.- . .+. .|..+..+
T Consensus 74 qiLe~~~vd~ideseVLTpad~~~hi~k~~fkvpfVcg~r~Lgealrri~EgAamIrtkGeagtgnvveav~h~R~i~~~ 153 (254)
T d1znna1 74 RVLEALGVDYIDESEVLTPADEEFHIDKRQFTVPFVCGCRDLGEAARRIAEGASMLRTKGEPGTGNIVEAVRHMRKVNAQ 153 (254)
T ss_dssp HHHHHHTCSEEEEETTSCCSCSSCCCCGGGCSSCEEEEESSHHHHHHHHHTTCSEEEECCCTTSCCCHHHHHHHHHHHHH
T ss_pred HhHHhhCCCcccHhHhcccccHHHhhcccceeeeeeCCCCccchhHHHHHHHHHHHHhCCccCCCcHHHHHHHHHHHHHH
Confidence 5677778888764311 0 000 01111000
Q ss_pred ---------CCCC------CccHHHHHHHHhc-CCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHh--CCchhHHh
Q 020423 248 ---------RTIP------PLKYEYYYALLRD-FPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ--NPWYTLGH 309 (326)
Q Consensus 248 ---------~~~~------~~~~~~i~~i~~~-~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~--dP~l~~~~ 309 (326)
+... ...++++.++.+. ...+|+++.|||.+|.|+..+++.|||+|.+|+++.. ||.-+.+.
T Consensus 154 i~~~~~m~~~el~~~ak~lg~p~~l~~~v~~~g~l~v~~~~~~Gi~tpadaa~~MelG~dgV~v~s~I~~s~dP~~~a~A 233 (254)
T d1znna1 154 IRKVVNMSEDELVAEAKQLGAPVEVLREIKRLGRLPVVNFAAGGVTTPADAALMMHLGADGVFVGSGIFKSENPEKYARA 233 (254)
T ss_dssp HHHHHHSCGGGHHHHHHHHTCCHHHHHHHHHHTSCSSEEEEESSCCSHHHHHHHHHTTCSEEEECGGGGGSSCHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHhhCCchHHHHHHHHhCCCCceEEecCCCCChhhHHHHHHcCCCEEEEcchhhcCCCHHHHHHH
Confidence 0000 0013444455542 2478999999999999999999999999999999885 67777777
Q ss_pred HHHhhhCCCCCC
Q 020423 310 VDTAIYGAPSSG 321 (326)
Q Consensus 310 i~~~~~~~~~~~ 321 (326)
+.....+..+|.
T Consensus 234 ~~~Avt~~~dp~ 245 (254)
T d1znna1 234 IVEATTHYEDYE 245 (254)
T ss_dssp HHHHHHTTTCHH
T ss_pred HHHHHHccCCHH
Confidence 777777766653
|
| >d1ofda2 c.1.4.1 (A:431-1239) Alpha subunit of glutamate synthase, central and FMN domains {Synechocystis sp. [TaxId: 1143]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Alpha subunit of glutamate synthase, central and FMN domains species: Synechocystis sp. [TaxId: 1143]
Probab=98.27 E-value=1e-06 Score=87.52 Aligned_cols=113 Identities=16% Similarity=0.114 Sum_probs=75.2
Q ss_pred CHHHHHHHHHHHHhcC-CCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCC-cCCCCCccH
Q 020423 178 DPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAE-NRTIPPLKY 255 (326)
Q Consensus 178 r~~~l~eiv~avr~~~-~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~-~~~~~~~~~ 255 (326)
.++-+.+.+..+|+.. +.||.||+-... .+..+. .-+.++|+|+|+|+|.++..+. ++.. -.... ..|
T Consensus 581 siedL~q~I~~Lr~~~~~~pv~vKl~~~~----g~~~ia----~~vaka~aD~I~IdG~eGGTGA-ap~~~~~~~G-lP~ 650 (809)
T d1ofda2 581 SIEDLAQLIYDLHQINPEAQVSVKLVAEI----GIGTIA----AGVAKANADIIQISGHDGGTGA-SPLSSIKHAG-SPW 650 (809)
T ss_dssp SHHHHHHHHHHHHHHCTTSEEEEEEECST----THHHHH----HHHHHTTCSEEEEECTTCCCSS-EEHHHHHHBC-CCH
T ss_pred CHHHHHHHHHHHHHhCCCCceEEEEeeec----ChHHHH----HHHhhcCCCEEEEeCCCCcccc-ccHHHHhcCC-ccH
Confidence 4888899999998866 789999987632 122222 2233689999999987653221 1100 00000 012
Q ss_pred H-HHHH----HHhcCC--CceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHH
Q 020423 256 E-YYYA----LLRDFP--DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAY 300 (326)
Q Consensus 256 ~-~i~~----i~~~~~--~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall 300 (326)
+ .+.+ +.+.-. +|.+++.||+.|+.|+.+++..|||.|.+||++|
T Consensus 651 ~~gl~~a~~~L~~~glR~~V~Lia~Ggl~t~~Dv~ka~aLGAD~v~~gt~~l 702 (809)
T d1ofda2 651 ELGVTEVHRVLMENQLRDRVLLRADGGLKTGWDVVMAALMGAEEYGFGSIAM 702 (809)
T ss_dssp HHHHHHHHHHHHHTTCGGGCEEEEESSCCSHHHHHHHHHTTCSEEECSHHHH
T ss_pred HHHHHHHHHHHHHcCCCCceEEEEeCCCCCHHHHHHHHHhCCCchhHhHHHH
Confidence 2 1222 222212 6999999999999999999999999999999987
|
| >d1thfd_ c.1.2.1 (D:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Thermotoga maritima [TaxId: 2336]
Probab=98.22 E-value=5.7e-06 Score=72.17 Aligned_cols=146 Identities=10% Similarity=0.116 Sum_probs=94.8
Q ss_pred HHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhc-CCCcEEEEe--------ccCCCCCc--c
Q 020423 142 ATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAAN-TNVPVSVKC--------RIGVDDHD--S 210 (326)
Q Consensus 142 aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~-~~~pv~vK~--------r~g~~~~~--~ 210 (326)
.++.+.++|+|-|-++ +...++++++.++.+..-.. +-..+.++. ..+|.... +
T Consensus 88 ~i~~~l~~Ga~kviig---------------s~~~~n~~~l~~~~~~~G~~~iv~~id~~~~~~~~~~~~~~~~~~~~~~ 152 (253)
T d1thfd_ 88 TASELILRGADKVSIN---------------TAAVENPSLITQIAQTFGSQAVVVAIDAKRVDGEFMVFTYSGKKNTGIL 152 (253)
T ss_dssp HHHHHHHTTCSEEEES---------------HHHHHCTHHHHHHHHHHCGGGEEEEEEEEEETTEEEEEETTTTEEEEEE
T ss_pred hhhhHHhcCCCEEEEC---------------hHHhhChHHHHHHHHHcCCeeEEEeeeecccCCceeeeeeecccccchh
Confidence 4555677899988874 33446799999999888432 212222221 11232211 2
Q ss_pred HHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCC
Q 020423 211 YNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGA 290 (326)
Q Consensus 211 ~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~Ga 290 (326)
+.+. +. .+++.|+..+.++.-.. .|.. ...+++.+.++.+. .++||+++||+.+.+|+.++...|+
T Consensus 153 ~~~~---~~-~~~~~g~~eii~tdI~~--dGt~-------~G~d~~ll~~i~~~-~~~pvi~~GGv~s~~di~~l~~~g~ 218 (253)
T d1thfd_ 153 LRDW---VV-EVEKRGAGEILLTSIDR--DGTK-------SGYDTEMIRFVRPL-TTLPIIASGGAGKMEHFLEAFLAGA 218 (253)
T ss_dssp HHHH---HH-HHHHTTCSEEEEEETTT--TTSC-------SCCCHHHHHHHGGG-CCSCEEEESCCCSHHHHHHHHHTTC
T ss_pred HHHH---HH-HHHhccCCEEEEEEecc--cCcc-------CCcccccccccccc-ccceEEEecCCCCHHHHHHHHHCCC
Confidence 3333 33 34578999998875432 1110 11347878777554 5999999999999999999999999
Q ss_pred ChhhhhHHHHhCCchhHHhHHHhhhCC
Q 020423 291 HHVMVGRAAYQNPWYTLGHVDTAIYGA 317 (326)
Q Consensus 291 D~V~iGRall~dP~l~~~~i~~~~~~~ 317 (326)
++|.+|++++.+-. -..++++.+...
T Consensus 219 ~gvivgsal~~~~~-~~~~~k~~l~~~ 244 (253)
T d1thfd_ 219 DAALAASVFHFREI-DVRELKEYLKKH 244 (253)
T ss_dssp SEEEESHHHHTTCS-CHHHHHHHHHHT
T ss_pred CEEEEchHHHcCCC-CHHHHHHHHHHC
Confidence 99999999887644 355566655433
|
| >d1ka9f_ c.1.2.1 (F:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Thermus thermophilus [TaxId: 274]
Probab=98.22 E-value=3.7e-06 Score=73.36 Aligned_cols=154 Identities=12% Similarity=0.170 Sum_probs=101.6
Q ss_pred EEEEecC--CCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC-CCcEEEEec-
Q 020423 127 IVLQIGG--SNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCR- 202 (326)
Q Consensus 127 iivQL~g--~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~-~~pv~vK~r- 202 (326)
+-+|+.| .+. +.++.+-++|++-|-++ +...++++++.++.+..-... -.-+.+|..
T Consensus 75 ~pi~vgGGIrs~----e~~~~ll~~Ga~kVii~---------------s~~~~n~~~i~~~~~~~G~q~iv~~id~~~~~ 135 (251)
T d1ka9f_ 75 IPLTVGGGVRSL----EDARKLLLSGADKVSVN---------------SAAVRRPELIRELADHFGAQAVVLAIDARWRG 135 (251)
T ss_dssp SCEEEESSCCSH----HHHHHHHHHTCSEEEEC---------------HHHHHCTHHHHHHHHHHCGGGEEEEEEEEEET
T ss_pred cchheeccccCH----HHHHHHHHcCCCEEEEC---------------chhhhCHHHHHHHHHhhcccccccccchhhcc
Confidence 4456654 333 34566677899988884 233467899999988875432 222333322
Q ss_pred -------cCCCCCc--cHHHHHHHHHHHhhhCCccEEEEecCCc--ccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEE
Q 020423 203 -------IGVDDHD--SYNQLCDFIYKVSSLSPTRHFIIHSRKA--LLNGISPAENRTIPPLKYEYYYALLRDFPDLTFT 271 (326)
Q Consensus 203 -------~g~~~~~--~~~e~~~~ia~~le~~Gvd~I~v~~~~~--~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVI 271 (326)
.+|.+.. ++.+. +. .+++.|+..+.++.-.. ...| .+++.+.++.+.. ++|+|
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~g~~eii~tdi~~dG~~~G-----------~d~~l~~~i~~~~-~~pii 199 (251)
T d1ka9f_ 136 DFPEVHVAGGRVPTGLHAVEW---AV-KGVELGAGEILLTSMDRDGTKEG-----------YDLRLTRMVAEAV-GVPVI 199 (251)
T ss_dssp TEEEEEETTTTEEEEEEHHHH---HH-HHHHHTCCEEEEEETTTTTTCSC-----------CCHHHHHHHHHHC-SSCEE
T ss_pred cceEEEeccceecCCccHHHH---HH-HHHhcCCCEEEEEeecccCccCC-----------cchhHHHHHHhhc-ceeEE
Confidence 2343322 23333 33 34578999999975432 2222 3478887877664 89999
Q ss_pred EeCCCCCHHHHHHHHHhCCChhhhhHHHHhCCchhHHhHHHhhhC
Q 020423 272 LNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYG 316 (326)
Q Consensus 272 a~GgI~s~~da~~~l~~GaD~V~iGRall~dP~l~~~~i~~~~~~ 316 (326)
++||+.+.+|+.++++.|+++|.+|++++..-. -...+++.+..
T Consensus 200 ~~GGv~~~~dl~~l~~~g~~gviig~al~~g~~-~~~~~k~~l~~ 243 (251)
T d1ka9f_ 200 ASGGAGRMEHFLEAFQAGAEAALAASVFHFGEI-PIPKLKRYLAE 243 (251)
T ss_dssp EESCCCSHHHHHHHHHTTCSEEEESHHHHTTSS-CHHHHHHHHHH
T ss_pred EecCCCCHHHHHHHHHCCCCEEEEhHHHHcCCC-CHHHHHHHHHH
Confidence 999999999999999999999999999886655 45556665543
|
| >d1h5ya_ c.1.2.1 (A:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=98.19 E-value=4.9e-06 Score=72.60 Aligned_cols=143 Identities=14% Similarity=0.148 Sum_probs=95.9
Q ss_pred HHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhc-CCCcEEEEec--------cCCCCCc--
Q 020423 141 KATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAAN-TNVPVSVKCR--------IGVDDHD-- 209 (326)
Q Consensus 141 ~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~-~~~pv~vK~r--------~g~~~~~-- 209 (326)
+.++.+.++|+|-|-++ +....+++++.++.+..-.. +-..+.+|.. -+|.+..
T Consensus 89 e~~~~ll~~G~~kVii~---------------s~~~~~~~~~~~~~~~~G~q~iv~slD~~~~~~~~~v~~~~~~~~~~~ 153 (252)
T d1h5ya_ 89 EDATTLFRAGADKVSVN---------------TAAVRNPQLVALLAREFGSQSTVVAIDAKWNGEYYEVYVKGGREATGL 153 (252)
T ss_dssp HHHHHHHHHTCSEEEES---------------HHHHHCTHHHHHHHHHHCGGGEEEEEEEEECSSSEEEEETTTTEEEEE
T ss_pred hhhhhHhhcCCcEEEec---------------ccccCCcchHHHHHHhcCCCcEEEEEEEEEcCCcEEEEEeCCeEcCCC
Confidence 34455667799988774 23346789999998887432 3334444432 1343322
Q ss_pred cHHHHHHHHHHHhhhCCccEEEEecCC--cccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHH
Q 020423 210 SYNQLCDFIYKVSSLSPTRHFIIHSRK--ALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR 287 (326)
Q Consensus 210 ~~~e~~~~ia~~le~~Gvd~I~v~~~~--~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~ 287 (326)
++.++. +.+++.|+..+.++.-. +...| .+++.+.++.+.. ++||+++||+.+.+|+.++..
T Consensus 154 ~~~~~~----~~~~~~g~~eii~tdI~~dG~~~G-----------~d~~~~~~i~~~~-~~pii~~GGv~~~~di~~l~~ 217 (252)
T d1h5ya_ 154 DAVKWA----KEVEELGAGEILLTSIDRDGTGLG-----------YDVELIRRVADSV-RIPVIASGGAGRVEHFYEAAA 217 (252)
T ss_dssp EHHHHH----HHHHHHTCSEEEEEETTTTTTCSC-----------CCHHHHHHHHHHC-SSCEEEESCCCSHHHHHHHHH
T ss_pred CHHHHH----HHHHhcCCCEEEEEeecccCccCC-----------cCHHHHHHHHHhc-CCCEEEecCCCCHHHHHHHHH
Confidence 233432 34567899999887543 22222 3478888877664 899999999999999999999
Q ss_pred hCCChhhhhHHHHhCCchhHHhHHHhhh
Q 020423 288 KGAHHVMVGRAAYQNPWYTLGHVDTAIY 315 (326)
Q Consensus 288 ~GaD~V~iGRall~dP~l~~~~i~~~~~ 315 (326)
.|+++|.+|++++.+-. -..++++.+.
T Consensus 218 ~g~~gv~~gs~l~~~~~-~~~~lk~~l~ 244 (252)
T d1h5ya_ 218 AGADAVLAASLFHFRVL-SIAQVKRYLK 244 (252)
T ss_dssp TTCSEEEESHHHHTTSS-CHHHHHHHHH
T ss_pred CCCCEEEEhhHHHcCCC-CHHHHHHHHH
Confidence 99999999999986644 4555665544
|
| >d1jvna1 c.1.2.1 (A:230-552) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]
Probab=98.17 E-value=5.6e-06 Score=74.63 Aligned_cols=86 Identities=8% Similarity=0.126 Sum_probs=64.5
Q ss_pred HHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHH-hCCChhhhhHH
Q 020423 220 KVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRA 298 (326)
Q Consensus 220 ~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~-~GaD~V~iGRa 298 (326)
+.+++.|+-.|.++..+. .|+. ...+.+.+.++.+.. ++|||++||+.+.+++.+++. .++++|.+|++
T Consensus 227 ~~~~~~G~GEIlltdIdr--DGt~-------~G~D~el~~~i~~~~-~iPiIasGGi~s~~di~~ll~~~~v~gv~~gs~ 296 (323)
T d1jvna1 227 RACEALGAGEILLNCIDK--DGSN-------SGYDLELIEHVKDAV-KIPVIASSGAGVPEHFEEAFLKTRADACLGAGM 296 (323)
T ss_dssp HHHHHTTCCEEEECCGGG--TTTC-------SCCCHHHHHHHHHHC-SSCEEECSCCCSHHHHHHHHHHSCCSEEEESHH
T ss_pred hhhhccCcceeEEEeecc--cccc-------cccchhHHHHHHHhC-CCCEEEECCCCCHHHHHHHHHhCCCeEEEEhhH
Confidence 345789999999986542 1210 123588888887765 899999999999999999887 67999999999
Q ss_pred HHhCCchhHHhHHHhhhC
Q 020423 299 AYQNPWYTLGHVDTAIYG 316 (326)
Q Consensus 299 ll~dP~l~~~~i~~~~~~ 316 (326)
+...-. -...+++.|..
T Consensus 297 ~~~~~~-si~elK~~L~~ 313 (323)
T d1jvna1 297 FHRGEF-TVNDVKEYLLE 313 (323)
T ss_dssp HHTTSC-CHHHHHHHHHH
T ss_pred HHcCCC-CHHHHHHHHHH
Confidence 987655 34556665543
|
| >d1rd5a_ c.1.2.4 (A:) Trp synthase alpha-subunit {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Trp synthase alpha-subunit species: Maize (Zea mays) [TaxId: 4577]
Probab=98.15 E-value=8.9e-06 Score=71.16 Aligned_cols=173 Identities=17% Similarity=0.210 Sum_probs=106.6
Q ss_pred CCCCcEE-EEecC--CCHHHHHHHHHHHHHCCCCEEEecC--CCCCCc-------ccCCCCccccccCCHHHHHHHHHHH
Q 020423 122 PEQHPIV-LQIGG--SNLDNLAKATELANAYNYDEINLNC--GCPSPK-------VAGHGCFGVSLMLDPKFVGEAMSVI 189 (326)
Q Consensus 122 ~~~~pii-vQL~g--~~~~~f~~aA~~a~~aG~d~Iein~--g~P~~~-------~~r~d~yGgsl~~r~~~l~eiv~av 189 (326)
+++++.. .=+.. .+.+.+.++++.+.++|+|.|||-+ +.|... ..|.=+=| ...+.+.++++.+
T Consensus 13 ~~~~~~li~y~~aG~P~~~~~~~~l~~l~~~G~DiiElGiPfSDP~aDGpvIq~a~~rAL~~G----~~~~~~~~~~~~~ 88 (261)
T d1rd5a_ 13 AKGKTAFIPYITAGDPDLATTAEALRLLDGCGADVIELGVPCSDPYIDGPIIQASVARALASG----TTMDAVLEMLREV 88 (261)
T ss_dssp HTTCCEEEEEEETTSSCHHHHHHHHHHHHHTTCSSEEEECCCSCCTTSCHHHHHHHHHHHTTT----CCHHHHHHHHHHH
T ss_pred HcCCCeEEEEEeCcCCCHHHHHHHHHHHHHcCCCEEEECCCCCCcCcCCcceeeeeeeccccC----cchhhhhhhhhcc
Confidence 3455543 33433 4689999999999999999999974 344321 00100012 3567889999999
Q ss_pred HhcCCCcEEEEecc--------------CCCC----CccHHHHHHHHHHHhhhCCccEEEEecCCc--------------
Q 020423 190 AANTNVPVSVKCRI--------------GVDD----HDSYNQLCDFIYKVSSLSPTRHFIIHSRKA-------------- 237 (326)
Q Consensus 190 r~~~~~pv~vK~r~--------------g~~~----~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~-------------- 237 (326)
|+..+.|+.+=.-. |.+. ...++|..+ +...+.+.|++.|-+-..+.
T Consensus 89 r~~~~~p~ilm~Y~n~~~~~~~~~~~~~GvdG~IipDlp~eE~~~-~~~~~~~~gl~~I~lvaPtt~~~Ri~~i~~~a~g 167 (261)
T d1rd5a_ 89 TPELSCPVVLLSYYKPIMFRSLAKMKEAGVHGLIVPDLPYVAAHS-LWSEAKNNNLELVLLTTPAIPEDRMKEITKASEG 167 (261)
T ss_dssp GGGCSSCEEEECCSHHHHSCCTHHHHHTTCCEEECTTCBTTTHHH-HHHHHHHTTCEECEEECTTSCHHHHHHHHHHCCS
T ss_pred cccccCceeeeeeecchhhHHHHHHHhcCceeeeecCccHHHHHH-HHHHHhccccceEEEeccCCchhHHHHHHhcCcc
Confidence 98888887653211 1100 001222222 33455678888877643211
Q ss_pred --c---cCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHh
Q 020423 238 --L---LNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 301 (326)
Q Consensus 238 --~---~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~ 301 (326)
+ ..|.++.. ........+.+.++++. .++||+..-||.+++++.++.+.|||+|.||++++.
T Consensus 168 FvY~vs~~GvTG~~-~~~~~~~~~~i~~ik~~-t~~Pi~vGFGI~~~e~v~~~~~~gaDGvIVGSaiv~ 234 (261)
T d1rd5a_ 168 FVYLVSVNGVTGPR-ANVNPRVESLIQEVKKV-TNKPVAVGFGISKPEHVKQIAQWGADGVIIGSAMVR 234 (261)
T ss_dssp CEEEECSSCCBCTT-SCBCTHHHHHHHHHHHH-CSSCEEEESCCCSHHHHHHHHHTTCSEEEECHHHHH
T ss_pred hhhhhhccCccccc-ccchhHHHHHHHHhhhc-cCCCeEEEcCCCCHHHHHHHHhcCCCEEEECHHHHH
Confidence 0 11333321 11222224566666655 599999999999999999999999999999999873
|
| >d1qopa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Trp synthase alpha-subunit species: Salmonella typhimurium [TaxId: 90371]
Probab=98.08 E-value=2.3e-05 Score=68.76 Aligned_cols=162 Identities=16% Similarity=0.149 Sum_probs=96.0
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEecCC--CCCCc---c----cCCCCccccccCCHHHHHHHHHHHHhcC-CCcEEEEecc
Q 020423 134 SNLDNLAKATELANAYNYDEINLNCG--CPSPK---V----AGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCRI 203 (326)
Q Consensus 134 ~~~~~f~~aA~~a~~aG~d~Iein~g--~P~~~---~----~r~d~yGgsl~~r~~~l~eiv~avr~~~-~~pv~vK~r~ 203 (326)
.+.+.+.+.++.+.++|+|.|||-+- .|... . .|.-+=| ...+.+.++++.+|+.. +.|+.+=.-.
T Consensus 28 P~~~~~~~~~~~l~~~GaDiiElGiPfSDP~aDGpvIq~a~~~al~~G----~~~~~~~~~~~~~r~~~~~~pivlm~Y~ 103 (267)
T d1qopa_ 28 PGIEQSLKIIDTLIDAGADALELGVPFSDPLADGPTIQNANLRAFAAG----VTPAQCFEMLAIIREKHPTIPIGLLMYA 103 (267)
T ss_dssp SCHHHHHHHHHHHHHTTCSSEEEECCCSCCTTCCHHHHHHHHHHHHTT----CCHHHHHHHHHHHHHHCSSSCEEEEECH
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECCCCCcccccchHHHhhhhhccccc----chhhhhhhhhhhhcccccccceEEEeec
Confidence 56788999999999999999999753 33210 0 0000002 35677888998888874 6787653211
Q ss_pred CCCCCccHHHHH---------------------HHHHHHhhhCCccEEEEecCCc-------------------ccCCCC
Q 020423 204 GVDDHDSYNQLC---------------------DFIYKVSSLSPTRHFIIHSRKA-------------------LLNGIS 243 (326)
Q Consensus 204 g~~~~~~~~e~~---------------------~~ia~~le~~Gvd~I~v~~~~~-------------------~~~g~~ 243 (326)
+....-.+++++ +.+.+.+.+.|++.|.+-..+. ...|.+
T Consensus 104 N~i~~~G~~~f~~~~~~~Gv~GliipDlP~ee~~~~~~~~~~~~l~~I~lvaPtt~~~Ri~~i~~~a~gFiY~vs~~GvT 183 (267)
T d1qopa_ 104 NLVFNNGIDAFYARCEQVGVDSVLVADVPVEESAPFRQAALRHNIAPIFICPPNADDDLLRQVASYGRGYTYLLSRSGVT 183 (267)
T ss_dssp HHHHTTCHHHHHHHHHHHTCCEEEETTCCGGGCHHHHHHHHHTTCEEECEECTTCCHHHHHHHHHHCCSCEEEESSSSCC
T ss_pred cchhhcCchHHHHHHHhcCCCceeccchhhhhhHHHHHhhhccCceEEEEecccccHHHHHHHHhhCchhhhhhcccccC
Confidence 000000011111 1123334456666655432211 011333
Q ss_pred cCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHh
Q 020423 244 PAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 301 (326)
Q Consensus 244 ~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~ 301 (326)
+... .....-.+.+.++++. .++||+..-||.+++++.++++.|||+|.||++++.
T Consensus 184 G~~~-~~~~~~~~~i~~ik~~-t~~Pv~vGFGI~~~e~v~~~~~~~ADGvIVGSAivk 239 (267)
T d1qopa_ 184 GAEN-RGALPLHHLIEKLKEY-HAAPALQGFGISSPEQVSAAVRAGAAGAISGSAIVK 239 (267)
T ss_dssp CSSS-CC--CCHHHHHHHHHT-TCCCEEEESSCCSHHHHHHHHHTTCSEEEECHHHHH
T ss_pred Cccc-ccchhHHHHHHHHhhh-ccCCceeecccCCHHHHHHHHhcCCCEEEECHHHHH
Confidence 3211 1112224566666554 599999999999999999999999999999999875
|
| >d1vzwa1 c.1.2.1 (A:2-240) Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA species: Streptomyces coelicolor [TaxId: 1902]
Probab=98.02 E-value=2.2e-05 Score=67.68 Aligned_cols=143 Identities=17% Similarity=0.308 Sum_probs=90.0
Q ss_pred EEEEecC--CCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEec--
Q 020423 127 IVLQIGG--SNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCR-- 202 (326)
Q Consensus 127 iivQL~g--~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r-- 202 (326)
+-+|+.| .+.+ .++.+-+.|+|-|-++ +...++++++.++.+......-+.+..|-.
T Consensus 75 ~pi~vGGGIrs~~----~~~~ll~~Ga~kVvi~---------------s~~~~~~~~~~~~~~~~g~~~vv~~d~~~~~~ 135 (239)
T d1vzwa1 75 IKVELSGGIRDDD----TLAAALATGCTRVNLG---------------TAALETPEWVAKVIAEHGDKIAVGLDVRGTTL 135 (239)
T ss_dssp SEEEEESSCCSHH----HHHHHHHTTCSEEEEC---------------HHHHHCHHHHHHHHHHHGGGEEEEEEEETTEE
T ss_pred cceEeecccccch----hhhhhhccccccchhh---------------HHhhhccccchhhhccCCceeeeeeccceeee
Confidence 3466655 2333 3455667899988875 233467999999988876543222222211
Q ss_pred --cCCCCC-ccHHHHHHHHHHHhhhCCccEEEEecCC--cccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCC
Q 020423 203 --IGVDDH-DSYNQLCDFIYKVSSLSPTRHFIIHSRK--ALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGIN 277 (326)
Q Consensus 203 --~g~~~~-~~~~e~~~~ia~~le~~Gvd~I~v~~~~--~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~ 277 (326)
.+|... ....+. +. .+.+.|+..|.++.-. +...| .+++.+..+.+. .++|++++|||.
T Consensus 136 ~~~g~~~~~~~~~~~---~~-~~~~~g~~eii~tdi~~dGt~~G-----------~d~~l~~~i~~~-~~~pvi~sGGv~ 199 (239)
T d1vzwa1 136 RGRGWTRDGGDLYET---LD-RLNKEGCARYVVTDIAKDGTLQG-----------PNLELLKNVCAA-TDRPVVASGGVS 199 (239)
T ss_dssp CCSSSCCCCCBHHHH---HH-HHHHTTCCCEEEEEC-------C-----------CCHHHHHHHHHT-CSSCEEEESCCC
T ss_pred cCccceeeccccchh---hh-hhhhccccEEEEEeecccceecC-----------Ccchhhhhhhhc-cCceEEEECCCC
Confidence 123222 122232 23 3356899888887433 22222 347777777665 489999999999
Q ss_pred CHHHHHHHHH---hCCChhhhhHHHHhCCc
Q 020423 278 TVDEVNAALR---KGAHHVMVGRAAYQNPW 304 (326)
Q Consensus 278 s~~da~~~l~---~GaD~V~iGRall~dP~ 304 (326)
+.+|+.++.+ .|+|+|.+|++++..--
T Consensus 200 s~~Di~~l~~l~~~g~~gvivg~al~~g~i 229 (239)
T d1vzwa1 200 SLDDLRAIAGLVPAGVEGAIVGKALYAKAF 229 (239)
T ss_dssp SHHHHHHHHTTGGGTEEEEEECHHHHTTSS
T ss_pred CHHHHHHHHhhhhCCccEeeEhHHHHCCCC
Confidence 9999998855 58999999999976543
|
| >d1ub3a_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Deoxyribose-phosphate aldolase DeoC species: Thermus thermophilus [TaxId: 274]
Probab=98.01 E-value=5.4e-05 Score=63.88 Aligned_cols=140 Identities=12% Similarity=0.124 Sum_probs=93.6
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHH
Q 020423 134 SNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQ 213 (326)
Q Consensus 134 ~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e 213 (326)
...+.-...++.+.+.|+|.||+=. + ||.-...+.+.+.+-+.++++.++. ..+|+-+....- +-++
T Consensus 67 ~~~~~k~~e~~~ai~~GA~EiD~V~-----n------~~~~~~g~~~~v~~ei~~v~~~~~~-~~lKVIlEt~~L-~~~e 133 (211)
T d1ub3a_ 67 QEKEVKALEAALACARGADEVDMVL-----H------LGRAKAGDLDYLEAEVRAVREAVPQ-AVLKVILETGYF-SPEE 133 (211)
T ss_dssp SCHHHHHHHHHHHHHTTCSEEEEEC-----C------HHHHHTTCHHHHHHHHHHHHHHSTT-SEEEEECCGGGS-CHHH
T ss_pred CcHHHHHHHHHHHHHcCCCeEEEee-----c------cchhhcCCHHHHHHHHHHHHHhccC-CceEEEeccccC-CHHH
Confidence 3456666777888999999999953 1 4555556788899889999888853 346765432111 2334
Q ss_pred HHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChh
Q 020423 214 LCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHV 293 (326)
Q Consensus 214 ~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V 293 (326)
+.+ +.++..++|+|+|-.+.+... .| ..+.+...+.+..+. ++.|=++|||+|.+++.++++.||+-+
T Consensus 134 i~~-a~~~a~~aGadfiKTSTG~~~-~g--------at~e~v~~m~~~~~~--~~~iKasGGIrt~~~a~~~l~aGa~ri 201 (211)
T d1ub3a_ 134 IAR-LAEAAIRGGADFLKTSTGFGP-RG--------ASLEDVALLVRVAQG--RAQVKAAGGIRDRETALRMLKAGASRL 201 (211)
T ss_dssp HHH-HHHHHHHHTCSEEECCCSSSS-CC--------CCHHHHHHHHHHHTT--SSEEEEESSCCSHHHHHHHHHTTCSEE
T ss_pred HHH-HHHHHHHhccceEEecCCCCC-CC--------CCHHHHHHHHHHhCC--CceEECcCCCCCHHHHHHHHHHhhhHh
Confidence 433 455667899999987765321 11 112223444444433 678889999999999999999999976
Q ss_pred hhhHH
Q 020423 294 MVGRA 298 (326)
Q Consensus 294 ~iGRa 298 (326)
.-.++
T Consensus 202 GtSs~ 206 (211)
T d1ub3a_ 202 GTSSG 206 (211)
T ss_dssp EETTH
T ss_pred ccCcH
Confidence 65443
|
| >d1wa3a1 c.1.10.1 (A:2-203) KDPG aldolase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: KDPG aldolase species: Thermotoga maritima [TaxId: 2336]
Probab=97.97 E-value=8.2e-05 Score=62.37 Aligned_cols=150 Identities=16% Similarity=0.222 Sum_probs=93.4
Q ss_pred CcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcc--------c-CCCCccccccCCHHHHHHHHHHHHhcCCC
Q 020423 125 HPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKV--------A-GHGCFGVSLMLDPKFVGEAMSVIAANTNV 195 (326)
Q Consensus 125 ~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~--------~-r~d~yGgsl~~r~~~l~eiv~avr~~~~~ 195 (326)
.|++.=|.+.+.++....++.+.+.|++.+||.+.+|.... . ..-..|..-..+++.+.+.+++ |.
T Consensus 9 ~~iipvlr~~~~~~a~~~~~al~~~Gi~~iEitlr~p~a~~~i~~l~~~~~~~~~vGaGTV~~~~~~~~a~~a-----Ga 83 (202)
T d1wa3a1 9 HKIVAVLRANSVEEAKEKALAVFEGGVHLIEITFTVPDADTVIKELSFLKEKGAIIGAGTVTSVEQCRKAVES-----GA 83 (202)
T ss_dssp HCEEEEECCSSHHHHHHHHHHHHHTTCCEEEEETTSTTHHHHHHHTHHHHHTTCEEEEESCCSHHHHHHHHHH-----TC
T ss_pred CCEEEEEECCCHHHHHHHHHHHHHcCCCEEEEecCCccHHHHHHHHHHhcCCCcEEEecccccHHHHHHHHhh-----cc
Confidence 56777788899999999999999999999999987765210 0 0011232222334444433332 33
Q ss_pred cEEEEeccCCCCC----------------ccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHH
Q 020423 196 PVSVKCRIGVDDH----------------DSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYY 259 (326)
Q Consensus 196 pv~vK~r~g~~~~----------------~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~ 259 (326)
.+.| +++.+.. .+..|+. +.+ ++|+|.+-+..... ....+++
T Consensus 84 ~fiv--sP~~~~~v~~~~~~~~i~~iPGv~TpsEi~----~A~-~~G~~~lK~fPa~~---------------~G~~~lk 141 (202)
T d1wa3a1 84 EFIV--SPHLDEEISQFCKEKGVFYMPGVMTPTELV----KAM-KLGHTILKLFPGEV---------------VGPQFVK 141 (202)
T ss_dssp SEEE--CSSCCHHHHHHHHHHTCEEECEECSHHHHH----HHH-HTTCCEEEETTHHH---------------HHHHHHH
T ss_pred cEEe--CCCCcHHHHHHHHhcCCceeCCcCcHHHHH----HHH-HCCCCEEEecchhh---------------cCHHHHH
Confidence 3333 3333210 0111211 111 35555555432110 1124667
Q ss_pred HHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhC
Q 020423 260 ALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN 302 (326)
Q Consensus 260 ~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~d 302 (326)
.+..-++++|++.+||| +.+++.++++.|+.+|.+|+++...
T Consensus 142 ~l~~p~p~i~~iptGGI-~~~n~~~~l~aga~avg~Gs~l~~~ 183 (202)
T d1wa3a1 142 AMKGPFPNVKFVPTGGV-NLDNVCEWFKAGVLAVGVGSALVKG 183 (202)
T ss_dssp HHHTTCTTCEEEEBSSC-CTTTHHHHHHHTCSCEEECHHHHCS
T ss_pred HHhCcccCCcEEeeCCC-CHHHHHHHHHCCCeEEEEchhhcCC
Confidence 77777789999999999 7899999999999999999999864
|
| >d1thfd_ c.1.2.1 (D:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Thermotoga maritima [TaxId: 2336]
Probab=97.97 E-value=6.3e-06 Score=71.90 Aligned_cols=85 Identities=21% Similarity=0.257 Sum_probs=65.4
Q ss_pred HHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhH
Q 020423 218 IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGR 297 (326)
Q Consensus 218 ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGR 297 (326)
+++.+++.|+|.+++-.-.+...+ ...+++.+.++.+. .++|+...|||++.+++++++..|||-|.+|+
T Consensus 35 ~a~~~~~~g~dei~ivDld~~~~~---------~~~~~~~i~~i~~~-~~~pi~vgGGIr~~e~i~~~l~~Ga~kviigs 104 (253)
T d1thfd_ 35 LGKFYSEIGIDELVFLDITASVEK---------RKTMLELVEKVAEQ-IDIPFTVGGGIHDFETASELILRGADKVSINT 104 (253)
T ss_dssp HHHHHHHTTCCEEEEEESSCSSSH---------HHHHHHHHHHHHTT-CCSCEEEESSCCSHHHHHHHHHTTCSEEEESH
T ss_pred HHHHHHHcCCCEEEEEeecccccC---------cccHHHHHHHHHhc-cCccceeecccccchhhhhHHhcCCCEEEECh
Confidence 355667899999999654432111 11246677777776 49999999999999999999999999999999
Q ss_pred HHHhCCchhHHhHHH
Q 020423 298 AAYQNPWYTLGHVDT 312 (326)
Q Consensus 298 all~dP~l~~~~i~~ 312 (326)
.++.||.++.+..+.
T Consensus 105 ~~~~n~~~l~~~~~~ 119 (253)
T d1thfd_ 105 AAVENPSLITQIAQT 119 (253)
T ss_dssp HHHHCTHHHHHHHHH
T ss_pred HHhhChHHHHHHHHH
Confidence 999999964444443
|
| >d1a53a_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Indole-3-glycerophosphate synthase, IPGS species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=97.92 E-value=0.00026 Score=60.90 Aligned_cols=51 Identities=20% Similarity=0.337 Sum_probs=43.1
Q ss_pred HHHHHHHHhcCC-CceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhCCch
Q 020423 255 YEYYYALLRDFP-DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 305 (326)
Q Consensus 255 ~~~i~~i~~~~~-~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~dP~l 305 (326)
.+...++.+..+ ++.+|+-+||.+++|+.++.+.|+|+|.||.+++.+|+.
T Consensus 190 ~~~~~~L~~~ip~~~~~IaESGI~t~~dv~~l~~~G~davLIGeaLmk~~d~ 241 (247)
T d1a53a_ 190 KENQRKLISMIPSNVVKVAESGISERNEIEELRKLGVNAFLIGSSLMRNPEK 241 (247)
T ss_dssp HHHHHHHHHHSCTTSEEEEESCCCCHHHHHHHHHTTCCEEEECHHHHHCTTH
T ss_pred hhHHHHHHhhCCCCCeEEEecCCCCHHHHHHHHHCCCCEEEECHHHcCCCch
Confidence 444455555554 689999999999999999999999999999999999983
|
| >d1h5ya_ c.1.2.1 (A:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=97.88 E-value=1e-05 Score=70.45 Aligned_cols=85 Identities=16% Similarity=0.190 Sum_probs=66.1
Q ss_pred HHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhH
Q 020423 218 IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGR 297 (326)
Q Consensus 218 ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGR 297 (326)
+++.+++.|+|.+++-.-.....+ .+.+++.+.++.+.. .+|+...|||++.+++++++..|||-|.+++
T Consensus 37 ~a~~~~~~gadei~ivDl~~~~~~---------~~~~~~~i~~i~~~~-~~pi~~gGGIr~~e~~~~ll~~G~~kVii~s 106 (252)
T d1h5ya_ 37 MAVRYEEEGADEIAILDITAAPEG---------RATFIDSVKRVAEAV-SIPVLVGGGVRSLEDATTLFRAGADKVSVNT 106 (252)
T ss_dssp HHHHHHHTTCSCEEEEECCCCTTT---------HHHHHHHHHHHHHHC-SSCEEEESSCCSHHHHHHHHHHTCSEEEESH
T ss_pred HHHHHHHCCCCEEEEEeccccccc---------cccHHHHHHHHHhhc-CCcceeecccchhhhhhhHhhcCCcEEEecc
Confidence 355667899999998765432111 123467788887765 9999999999999999999999999999999
Q ss_pred HHHhCCchhHHhHHH
Q 020423 298 AAYQNPWYTLGHVDT 312 (326)
Q Consensus 298 all~dP~l~~~~i~~ 312 (326)
.++.||.++.+..+.
T Consensus 107 ~~~~~~~~~~~~~~~ 121 (252)
T d1h5ya_ 107 AAVRNPQLVALLARE 121 (252)
T ss_dssp HHHHCTHHHHHHHHH
T ss_pred cccCCcchHHHHHHh
Confidence 999999965444443
|
| >d1mzha_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Deoxyribose-phosphate aldolase DeoC species: Aquifex aeolicus [TaxId: 63363]
Probab=97.87 E-value=9.2e-05 Score=63.03 Aligned_cols=140 Identities=11% Similarity=0.061 Sum_probs=91.1
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHH
Q 020423 135 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQL 214 (326)
Q Consensus 135 ~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~ 214 (326)
..+.-..-++.+.+.|+|.||+=.. ||.-...+.+.+.+-++++++.++.. .+|+-+-... .+-+++
T Consensus 68 ~~~~K~~E~~~Ai~~GAdEID~Vin-----------~~~l~~g~~~~v~~ei~~v~~~~~~~-~lKVIlEt~~-L~~~ei 134 (225)
T d1mzha_ 68 KTSVKVKEAVEAVRDGAQELDIVWN-----------LSAFKSEKYDFVVEELKEIFRETPSA-VHKVIVETPY-LNEEEI 134 (225)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEEECC-----------HHHHHTTCHHHHHHHHHHHHHTCTTS-EEEEECCGGG-CCHHHH
T ss_pred cHHHHHHHHHHHHHcCCCeEEEeec-----------hhhhhcccHHHHHHHHHHHHHhccCc-eeehhhhhcc-CCHHHH
Confidence 4555566677888899999999541 34434456778888888888877432 3565442111 123344
Q ss_pred HHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhh
Q 020423 215 CDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVM 294 (326)
Q Consensus 215 ~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~ 294 (326)
.. +.++..++|+|+|-.+.+... .|. .+.+...+.+..+ .++.|=++|||+|.+++.++++.||+-+.
T Consensus 135 ~~-a~~~a~~aGadfiKTSTG~~~-~ga--------t~e~v~~m~~~~~--~~~~iKasGGIrt~~~a~~~i~~Ga~RiG 202 (225)
T d1mzha_ 135 KK-AVEICIEAGADFIKTSTGFAP-RGT--------TLEEVRLIKSSAK--GRIKVKASGGIRDLETAISMIEAGADRIG 202 (225)
T ss_dssp HH-HHHHHHHHTCSEEECCCSCSS-SCC--------CHHHHHHHHHHHT--TSSEEEEESSCCSHHHHHHHHHTTCSEEE
T ss_pred HH-HHHHHHHcccceEeecCCCCC-CCC--------CHHHHHHHHHHhC--CCceEECcCCCCCHHHHHHHHHhchhhee
Confidence 33 455666799999987765421 111 1112334444433 26899999999999999999999999877
Q ss_pred hhHHH
Q 020423 295 VGRAA 299 (326)
Q Consensus 295 iGRal 299 (326)
..+++
T Consensus 203 tSs~~ 207 (225)
T d1mzha_ 203 TSSGI 207 (225)
T ss_dssp ESCHH
T ss_pred cCcHH
Confidence 76654
|
| >d1geqa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Trp synthase alpha-subunit species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=97.85 E-value=4.3e-05 Score=66.15 Aligned_cols=162 Identities=14% Similarity=0.144 Sum_probs=92.4
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEecCC--CCCCc---ccCCCCcccccc--CCHHHHHHHHHHHHhcCCCcEEEEecc---
Q 020423 134 SNLDNLAKATELANAYNYDEINLNCG--CPSPK---VAGHGCFGVSLM--LDPKFVGEAMSVIAANTNVPVSVKCRI--- 203 (326)
Q Consensus 134 ~~~~~f~~aA~~a~~aG~d~Iein~g--~P~~~---~~r~d~yGgsl~--~r~~~l~eiv~avr~~~~~pv~vK~r~--- 203 (326)
.+.+.+.+.++.+. .|+|.|||-+- -|... .++ ..--+|. -+.+.+.++++++|+..+.|+.+=.-.
T Consensus 16 P~~~~s~~~l~~l~-~g~d~iEiGiPfSDP~aDGpvIq~--A~~rAl~~G~~~~~~~~~~~~~r~~~~~pivlm~Y~N~i 92 (248)
T d1geqa_ 16 PDKQSTLNFLLALD-EYAGAIELGIPFSDPIADGKTIQE--SHYRALKNGFKLREAFWIVKEFRRHSSTPIVLMTYYNPI 92 (248)
T ss_dssp SCHHHHHHHHHHHG-GGBSCEEEECCCSCCTTSCHHHHH--HHHHHHHTTCCHHHHHHHHHHHHTTCCCCEEEEECHHHH
T ss_pred CCHHHHHHHHHHHH-cCCCEEEECCCCCCccccCHHHHH--hhhHHHhCCccHHHHHHHHHHHhhcCCCcEEEEeccccc
Confidence 46678888887764 59999999653 23210 000 0000111 256788999999999888887653111
Q ss_pred ---CCCCC----------------ccHHHHHHHHHHHhhhCCccEEEEecCCc-------------------ccCCCCcC
Q 020423 204 ---GVDDH----------------DSYNQLCDFIYKVSSLSPTRHFIIHSRKA-------------------LLNGISPA 245 (326)
Q Consensus 204 ---g~~~~----------------~~~~e~~~~ia~~le~~Gvd~I~v~~~~~-------------------~~~g~~~~ 245 (326)
|.+.. ...+|..+ +...+.+.|++.|-+-..+. ...|.++.
T Consensus 93 ~~~G~~~f~~~~~~~Gv~GliipDLP~eE~~~-~~~~~~~~gl~~I~lvaPtt~~~ri~~i~~~s~gFiY~vs~~GvTG~ 171 (248)
T d1geqa_ 93 YRAGVRNFLAEAKASGVDGILVVDLPVFHAKE-FTEIAREEGIKTVFLAAPNTPDERLKVIDDMTTGFVYLVSLYGTTGA 171 (248)
T ss_dssp HHHCHHHHHHHHHHHTCCEEEETTCCGGGHHH-HHHHHHHHTCEEEEEECTTCCHHHHHHHHHHCSSEEEEECCC-----
T ss_pred cccCHHHHhhhhcccCeeEEeccCCcHHHHHH-HHhhccccCcceEEEecccchhHHHHHHHhcCCCeEEEEeccccccc
Confidence 10000 00111111 23334456666665532211 01122221
Q ss_pred CcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHh
Q 020423 246 ENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 301 (326)
Q Consensus 246 ~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~ 301 (326)
. ...+....+.+.++++. .++||+..-||.+++++.++++.+||+|.+|++++.
T Consensus 172 ~-~~~~~~~~~~v~~vk~~-t~~Pv~vGFGI~~~e~v~~~~~~~ADGvIVGSaiv~ 225 (248)
T d1geqa_ 172 R-EEIPKTAYDLLRRAKRI-CRNKVAVGFGVSKREHVVSLLKEGANGVVVGSALVK 225 (248)
T ss_dssp ---CCCHHHHHHHHHHHHH-CSSCEEEESCCCSHHHHHHHHHTTCSEEEECHHHHH
T ss_pred c-hhhhhhHHHHHHHHhhh-cccceeeecccCCHHHHHHHHhcCCCEEEECHHHHH
Confidence 1 11122123566666665 599999999999999999999999999999999863
|
| >d1qo2a_ c.1.2.1 (A:) Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA species: Thermotoga maritima [TaxId: 2336]
Probab=97.76 E-value=2.7e-05 Score=67.15 Aligned_cols=80 Identities=14% Similarity=0.148 Sum_probs=59.9
Q ss_pred HhhhCCccEEEEecCCc--ccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHh------CCCh
Q 020423 221 VSSLSPTRHFIIHSRKA--LLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRK------GAHH 292 (326)
Q Consensus 221 ~le~~Gvd~I~v~~~~~--~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~------GaD~ 292 (326)
.+++.|+..+.++.-.. ...| .+++.+..+.+. +++|||++||+.+.+|+.++.+. |+++
T Consensus 152 ~~~~~g~~eii~~dId~dGt~~G-----------~d~~l~~~i~~~-~~~pvi~~GGv~s~~di~~l~~ig~~~~~~~~g 219 (241)
T d1qo2a_ 152 RLKEYGLEEIVHTEIEKDGTLQE-----------HDFSLTKKIAIE-AEVKVLAAGGISSENSLKTAQKVHTETNGLLKG 219 (241)
T ss_dssp HHHTTTCCEEEEEETTHHHHTCC-----------CCHHHHHHHHHH-HTCEEEEESSCCSHHHHHHHHHHHHHTTTSEEE
T ss_pred HhhccccceEEEeehhhhhhccc-----------cchhhhhhhhcc-CCceEEEECCCCCHHHHHHHHHccccccCCEee
Confidence 45678999999885432 2222 347888777665 48999999999999999999873 4899
Q ss_pred hhhhHHHHhCCchhHHhHHHh
Q 020423 293 VMVGRAAYQNPWYTLGHVDTA 313 (326)
Q Consensus 293 V~iGRall~dP~l~~~~i~~~ 313 (326)
|.+|++++.+-. -.+++++.
T Consensus 220 vivG~al~~g~l-~~~~~k~~ 239 (241)
T d1qo2a_ 220 VIVGRAFLEGIL-TVEVMKRY 239 (241)
T ss_dssp EEECHHHHTTSS-CHHHHHHH
T ss_pred EEEHHHHHCCCC-CHHHHHHH
Confidence 999999986543 45556553
|
| >d1n7ka_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Deoxyribose-phosphate aldolase DeoC species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=97.75 E-value=0.00017 Score=61.77 Aligned_cols=139 Identities=12% Similarity=0.029 Sum_probs=82.5
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHH
Q 020423 134 SNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQ 213 (326)
Q Consensus 134 ~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e 213 (326)
...+.-..-++.+.+.|+|.||+-.. +|.......+.+.++++.++ ..+.+ +|+-+.... .+.++
T Consensus 85 ~~~~~k~~E~~~Ai~~GAdEID~Vin-----------~~~~~~~~~~ev~~~~~~~~-~~g~~--lKVIlEt~~-L~~~~ 149 (234)
T d1n7ka_ 85 APLEVKLVEAQTVLEAGATELDVVPH-----------LSLGPEAVYREVSGIVKLAK-SYGAV--VKVILEAPL-WDDKT 149 (234)
T ss_dssp SCHHHHHHHHHHHHHHTCCEEEECCC-----------GGGCHHHHHHHHHHHHHHHH-HTTCE--EEEECCGGG-SCHHH
T ss_pred CcHHHHHHHHHHHHHcCCCeEEEEec-----------hhhhhhhhHHHHHHHHHHHh-ccCce--EEEEEeccc-cchHH
Confidence 34566667777888899999998531 23222233445556665543 33444 554442111 12233
Q ss_pred HHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChh
Q 020423 214 LCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHV 293 (326)
Q Consensus 214 ~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V 293 (326)
+.. +.++..++|+|+|--+.+....++ .+.....+.+..+. .++.|=++|||+|.+++.++++.||+-+
T Consensus 150 i~~-a~~~a~~aGadFVKTSTG~~~~ga---------t~~~~~~l~~~~~~-~~vgIKasGGIrt~~~a~~~i~aGa~rI 218 (234)
T d1n7ka_ 150 LSL-LVDSSRRAGADIVKTSTGVYTKGG---------DPVTVFRLASLAKP-LGMGVKASGGIRSGIDAVLAVGAGADII 218 (234)
T ss_dssp HHH-HHHHHHHTTCSEEESCCSSSCCCC---------SHHHHHHHHHHHGG-GTCEEEEESSCCSHHHHHHHHHTTCSEE
T ss_pred HHH-HHHHHHHhhhhheeecccccCCCC---------CHHHHHHHHHHhcC-CCCcEEeeCCcCCHHHHHHHHHccCcee
Confidence 333 445566799999987654321110 11122233333333 2689999999999999999999999977
Q ss_pred hhhHH
Q 020423 294 MVGRA 298 (326)
Q Consensus 294 ~iGRa 298 (326)
.-.++
T Consensus 219 GtSs~ 223 (234)
T d1n7ka_ 219 GTSSA 223 (234)
T ss_dssp EETTH
T ss_pred ecchH
Confidence 65554
|
| >d1vc4a_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Indole-3-glycerophosphate synthase, IPGS species: Thermus thermophilus [TaxId: 274]
Probab=97.73 E-value=0.00056 Score=58.94 Aligned_cols=54 Identities=15% Similarity=0.099 Sum_probs=40.7
Q ss_pred HHHHHHhcC-CCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhCCchhHHhHHH
Q 020423 257 YYYALLRDF-PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDT 312 (326)
Q Consensus 257 ~i~~i~~~~-~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~dP~l~~~~i~~ 312 (326)
.+.++..+. .++.+|+.+||.+++|+..+ +.|+|+|.||.++|.+|+ ..+.+++
T Consensus 197 ~l~~~i~~~~~~~i~IsESGI~~~~dv~~l-~~g~davLIGesLm~~~d-~~~~l~~ 251 (254)
T d1vc4a_ 197 RLGRLARKRGFGGVLVAESGYSRKEELKAL-EGLFDAVLIGTSLMRAPD-LEAALRE 251 (254)
T ss_dssp HHHHHHHHTTCCSEEEEESCCCSHHHHHTT-TTTCSEEEECHHHHTSSC-HHHHHHH
T ss_pred HhhhcccccCCCCEEEEccCCCCHHHHHHH-HcCCCEEEEChhhcCCCC-HHHHHHH
Confidence 344444433 36889999999999998664 679999999999999999 3444443
|
| >d1ka9f_ c.1.2.1 (F:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Thermus thermophilus [TaxId: 274]
Probab=97.73 E-value=2.4e-05 Score=67.96 Aligned_cols=84 Identities=15% Similarity=0.206 Sum_probs=65.2
Q ss_pred HHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHH
Q 020423 219 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRA 298 (326)
Q Consensus 219 a~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRa 298 (326)
++.+++.|+|.+++-.-.....+ ...+++.+.++.+.. .+|+...|||++.+++++++..||+-|.+|+.
T Consensus 36 a~~~~~~g~dei~iiDl~~~~~~---------~~~~~~~i~~i~~~~-~~pi~vgGGIrs~e~~~~ll~~Ga~kVii~s~ 105 (251)
T d1ka9f_ 36 ARAYDEAGADELVFLDISATHEE---------RAILLDVVARVAERV-FIPLTVGGGVRSLEDARKLLLSGADKVSVNSA 105 (251)
T ss_dssp HHHHHHHTCSCEEEEECCSSTTC---------HHHHHHHHHHHHTTC-CSCEEEESSCCSHHHHHHHHHHTCSEEEECHH
T ss_pred HHHHHHcCCCEEEEEeccccccc---------chhHHHHHHHHHhcc-CcchheeccccCHHHHHHHHHcCCCEEEECch
Confidence 45667789999999764432111 122466778887765 89999999999999999999999999999999
Q ss_pred HHhCCchhHHhHHH
Q 020423 299 AYQNPWYTLGHVDT 312 (326)
Q Consensus 299 ll~dP~l~~~~i~~ 312 (326)
++.||.++.+..+.
T Consensus 106 ~~~n~~~i~~~~~~ 119 (251)
T d1ka9f_ 106 AVRRPELIRELADH 119 (251)
T ss_dssp HHHCTHHHHHHHHH
T ss_pred hhhCHHHHHHHHHh
Confidence 99999965444443
|
| >d1o0ya_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Deoxyribose-phosphate aldolase DeoC species: Thermotoga maritima [TaxId: 2336]
Probab=97.72 E-value=0.00023 Score=61.35 Aligned_cols=138 Identities=14% Similarity=0.130 Sum_probs=90.9
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHH
Q 020423 135 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQL 214 (326)
Q Consensus 135 ~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~ 214 (326)
..+.-..-++.+.+.|+|.||+=.. ||.-...+.+.+.+-++++++.++ ...+|+-+.... -+-++.
T Consensus 101 ~~~~K~~Ea~~Ai~~GAdEID~Vin-----------~~~l~~g~~~~v~~ei~~v~~~~~-~~~lKVIlEt~~-L~~~e~ 167 (251)
T d1o0ya_ 101 ETRTKAHEAIFAVESGADEIDMVIN-----------VGMLKAKEWEYVYEDIRSVVESVK-GKVVKVIIETCY-LDTEEK 167 (251)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEECC-----------HHHHHTTCHHHHHHHHHHHHHHTT-TSEEEEECCGGG-CCHHHH
T ss_pred cHHHHHHHHHHHHHcCCceEEEEec-----------cchhhcCCHHHHHHHHHHHHHHhc-ccceeeeecccc-cCcHHH
Confidence 4455566678888899999999531 444445678888888999988874 345676552111 122344
Q ss_pred HHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhh
Q 020423 215 CDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVM 294 (326)
Q Consensus 215 ~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~ 294 (326)
.. +.++..++|+|+|-.+.+... +|. .+.+...+.+... .++.|=++|||+|.+++.++++.|||-+.
T Consensus 168 ~~-a~~ia~~aGadfvKTSTGf~~-~ga--------t~e~V~~m~~~~~--~~~giKasGGIrt~~~a~~~i~aGa~riG 235 (251)
T d1o0ya_ 168 IA-ACVISKLAGAHFVKTSTGFGT-GGA--------TAEDVHLMKWIVG--DEMGVKASGGIRTFEDAVKMIMYGADRIG 235 (251)
T ss_dssp HH-HHHHHHHTTCSEEECCCSSSS-CCC--------CHHHHHHHHHHHC--TTSEEEEESSCCSHHHHHHHHHTTCSEEE
T ss_pred HH-HHHHHHHhCcceeeccCCCCC-CCc--------CHHHHHHHHHHhC--CCceEeccCCcCCHHHHHHHHHHhhHHhC
Confidence 43 455667899999987765421 111 1122334444443 26888899999999999999999999865
Q ss_pred hhH
Q 020423 295 VGR 297 (326)
Q Consensus 295 iGR 297 (326)
-.+
T Consensus 236 tSs 238 (251)
T d1o0ya_ 236 TSS 238 (251)
T ss_dssp ESC
T ss_pred CCc
Confidence 443
|
| >d2flia1 c.1.2.2 (A:3-219) D-ribulose-5-phosphate 3-epimerase {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: D-ribulose-5-phosphate 3-epimerase domain: D-ribulose-5-phosphate 3-epimerase species: Streptococcus pyogenes [TaxId: 1314]
Probab=97.72 E-value=0.00016 Score=61.31 Aligned_cols=158 Identities=14% Similarity=0.241 Sum_probs=99.7
Q ss_pred cEEEEecCCCHHHHHHHHHHHHHCCCCEEEecC--CCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEecc
Q 020423 126 PIVLQIGGSNLDNLAKATELANAYNYDEINLNC--GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRI 203 (326)
Q Consensus 126 piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~--g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~ 203 (326)
++..+|...+...+.+..+.+.++|+|.+.+-. |.-.++ . .+| + +.++.+++.++.|+.+-+-.
T Consensus 3 kIspSil~~d~~~l~~~i~~~~~~g~d~iHiDimDg~Fvpn-~---s~g------~----~~i~~i~~~t~~~~dvHLMv 68 (217)
T d2flia1 3 KIAPSILAADYANFASELARIEETDAEYVHIDIMDGQFVPN-I---SFG------A----DVVASMRKHSKLVFDCHLMV 68 (217)
T ss_dssp EEEEBGGGSCGGGHHHHHHHHHHTTCCEEEEEEEBSSSSSC-B---CBC------H----HHHHHHHTTCCSEEEEEEES
T ss_pred EEEeehhhcCHHHHHHHHHHHHHcCCCEEEEEcccCcCCCc-c---ccC------H----HHHHHHHhcCCCceEeEEEe
Confidence 366778888888899999999999999876642 222211 1 134 3 45677788788888887655
Q ss_pred CCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcc--------------------------------------------c
Q 020423 204 GVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKAL--------------------------------------------L 239 (326)
Q Consensus 204 g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~--------------------------------------------~ 239 (326)
. +.... +.++ .++|+|.|++|..... .
T Consensus 69 ~--~P~~~------i~~~-~~~ga~~i~~H~E~~~~~~~~i~~i~~~g~~~Gial~p~T~~~~~~~~l~~id~vliM~V~ 139 (217)
T d2flia1 69 V--DPERY------VEAF-AQAGADIMTIHTESTRHIHGALQKIKAAGMKAGVVINPGTPATALEPLLDLVDQVLIMTVN 139 (217)
T ss_dssp S--SGGGG------HHHH-HHHTCSEEEEEGGGCSCHHHHHHHHHHTTSEEEEEECTTSCGGGGGGGTTTCSEEEEESSC
T ss_pred c--CHHHH------HHHH-HHcCCcEEEeccccccCHHHHHHHHHhcCCeEEEEecCCcchhHHHhHHhhcCEEEEEEEc
Confidence 2 22211 1122 2468888887732100 0
Q ss_pred CCCCcCCcCCCCCccHHHHHHHH----hcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhCCchhHHhHH
Q 020423 240 NGISPAENRTIPPLKYEYYYALL----RDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVD 311 (326)
Q Consensus 240 ~g~~~~~~~~~~~~~~~~i~~i~----~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~dP~l~~~~i~ 311 (326)
.|.++ ....+..++.+.+++ +...+++|..-||| +.+.+..+.+.|||.+.+|++++.+++ ..+.+.
T Consensus 140 pG~~G---q~f~~~~~~ki~~l~~~~~~~~~~~~I~vDGGI-n~~~i~~l~~aGad~~V~Gsaif~~~d-~~~~i~ 210 (217)
T d2flia1 140 PGFGG---QAFIPECLEKVATVAKWRDEKGLSFDIEVDGGV-DNKTIRACYEAGANVFVAGSYLFKASD-LVSQVQ 210 (217)
T ss_dssp TTCSS---CCCCGGGHHHHHHHHHHHHHTTCCCEEEEESSC-CTTTHHHHHHHTCCEEEESHHHHTSSC-HHHHHH
T ss_pred Ccccc---cccchhhHHHHHHHHHHHHhcCCCeEEEEeCCC-CHHHHHHHHHCCCCEEEEchHHhCCCC-HHHHHH
Confidence 02221 111222344444443 23457999999999 577899999999999999999998888 344443
|
| >d2gl5a1 c.1.11.2 (A:123-400) Putative dehydratase protein STM2273 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Putative dehydratase protein STM2273 species: Salmonella typhimurium [TaxId: 90371]
Probab=97.70 E-value=0.00034 Score=61.30 Aligned_cols=141 Identities=13% Similarity=0.047 Sum_probs=95.3
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEecCCCCCCcc------cCCCCc-cccccCCHHHHHHHHHHHHhcCCCc--EEEEeccC
Q 020423 134 SNLDNLAKATELANAYNYDEINLNCGCPSPKV------AGHGCF-GVSLMLDPKFVGEAMSVIAANTNVP--VSVKCRIG 204 (326)
Q Consensus 134 ~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~------~r~d~y-Ggsl~~r~~~l~eiv~avr~~~~~p--v~vK~r~g 204 (326)
.+|+++++.|+.+.+.||+.+-++.+.+.... .+...+ |.....+.+.-.+.+++||+.+|.. +.+-...+
T Consensus 25 ~tPe~~~~~a~~~~~~Gf~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~di~~v~aiRe~vG~~~~l~vDan~~ 104 (278)
T d2gl5a1 25 VTPEEYAEAARAALDDGYDAIKVDPLEIDRNGDDCVFQNRNRNYSGLLLADQLKMGEARIAAMREAMGDDADIIVEIHSL 104 (278)
T ss_dssp CSHHHHHHHHHHHHHTTCSEEEECSSSBCTTSCBTTTSSCCGGGGSCCCHHHHHHHHHHHHHHHHHHCSSSEEEEECTTC
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEccccCCccccccccccccccccccccHHHHHHHHHHHHHHHHHhccccceeeccccc
Confidence 57999999999999999999999866432110 011111 1122244567778899999988544 44443333
Q ss_pred CCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHH
Q 020423 205 VDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNA 284 (326)
Q Consensus 205 ~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~ 284 (326)
| +.++.++ +.+.+++.++.++. . .+++.+++.++++++.. ++||.+.-.+.+.++..+
T Consensus 105 ~----~~~~Ai~-~~~~L~~~~l~wiE----e------------Pi~~~d~~~~~~L~~~~-~ipIa~gE~~~~~~~~~~ 162 (278)
T d2gl5a1 105 L----GTNSAIQ-FAKAIEKYRIFLYE----E------------PIHPLNSDNMQKVSRST-TIPIATGERSYTRWGYRE 162 (278)
T ss_dssp S----CHHHHHH-HHHHHGGGCEEEEE----C------------SSCSSCHHHHHHHHHHC-SSCEEECTTCCTTHHHHH
T ss_pred c----cchhhHH-HHHHhcccccceec----c------------cccccchhhhhhhcccc-ccceecccccCChHHHhh
Confidence 3 3445555 45677888887763 1 12334577777887765 899988888999999999
Q ss_pred HHHhC-CChhhhh
Q 020423 285 ALRKG-AHHVMVG 296 (326)
Q Consensus 285 ~l~~G-aD~V~iG 296 (326)
+++.| +|.+++-
T Consensus 163 ~i~~~a~di~~~d 175 (278)
T d2gl5a1 163 LLEKQSIAVAQPD 175 (278)
T ss_dssp HHHTTCCSEECCC
T ss_pred hhccccceeEeec
Confidence 99965 7877764
|
| >d1h1ya_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Rice (Oryza sativa) [TaxId: 4530]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: D-ribulose-5-phosphate 3-epimerase domain: D-ribulose-5-phosphate 3-epimerase species: Rice (Oryza sativa) [TaxId: 4530]
Probab=97.66 E-value=0.00019 Score=60.84 Aligned_cols=156 Identities=17% Similarity=0.290 Sum_probs=98.0
Q ss_pred CcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecC--C--CCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEE
Q 020423 125 HPIVLQIGGSNLDNLAKATELANAYNYDEINLNC--G--CPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVK 200 (326)
Q Consensus 125 ~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~--g--~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK 200 (326)
.++..+|...+...+.+..+++.++|+|.+.+-. | +|+. .|| + +.++.+++.++.|+.+-
T Consensus 2 ~kI~pSil~ad~~~l~~ei~~l~~~~~d~iHiDimDg~Fvpn~------t~~------~----~~i~~i~~~~~~~~dvH 65 (220)
T d1h1ya_ 2 AKIAPSMLSSDFANLAAEADRMVRLGADWLHMDIMDGHFVPNL------TIG------A----PVIQSLRKHTKAYLDCH 65 (220)
T ss_dssp CEEEEBGGGSCGGGHHHHHHHHHHTTCSEEEEEEEBSSSSSCB------CBC------H----HHHHHHHTTCCSEEEEE
T ss_pred cEEEhhhhhcCHHHHHHHHHHHHHcCCCEEEEeeecCcccccc------ccC------c----hhhhhhhhhcchhhhhH
Confidence 4578888888888999999999999999776643 2 2321 134 3 45666777777777765
Q ss_pred eccCCCCCccHHHHHHHHHHHhhhCCccEEEEecC---------------------------Ccc---------------
Q 020423 201 CRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSR---------------------------KAL--------------- 238 (326)
Q Consensus 201 ~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~---------------------------~~~--------------- 238 (326)
+-.. +.... +.+ +.++|+|.|++|-. +..
T Consensus 66 LMv~--~p~~~------i~~-~~~~g~~~I~~H~E~~~~~~~~~i~~i~~~g~~~Glal~p~t~~~~~~~~l~~~~~~d~ 136 (220)
T d1h1ya_ 66 LMVT--NPSDY------VEP-LAKAGASGFTFHIEVSRDNWQELIQSIKAKGMRPGVSLRPGTPVEEVFPLVEAENPVEL 136 (220)
T ss_dssp EESS--CGGGG------HHH-HHHHTCSEEEEEGGGCTTTHHHHHHHHHHTTCEEEEEECTTSCGGGGHHHHHSSSCCSE
T ss_pred HHhc--chhhh------hHH-hhhcccceeeecccccchhHHHHHHHHHHcCCCcceeeccccchhHHHHHHhcccccce
Confidence 4332 11110 000 11233333333311 100
Q ss_pred ------cCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhCCchhHHhH
Q 020423 239 ------LNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 310 (326)
Q Consensus 239 ------~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~dP~l~~~~i 310 (326)
..|.++ ....+..++.+.++++..++++|..-||| +.+.+..+.+.|||.+.+|++++.+++ ..+.+
T Consensus 137 vlim~v~PG~~G---Q~f~~~~l~kI~~l~~~~~~~~I~VDGGI-n~~~i~~l~~aGad~~V~GS~if~~~d-~~~~i 209 (220)
T d1h1ya_ 137 VLVMTVEPGFGG---QKFMPEMMEKVRALRKKYPSLDIEVDGGL-GPSTIDVAASAGANCIVAGSSIFGAAE-PGEVI 209 (220)
T ss_dssp EEEESSCTTCSS---CCCCGGGHHHHHHHHHHCTTSEEEEESSC-STTTHHHHHHHTCCEEEESHHHHTSSC-HHHHH
T ss_pred EEEEecCCCCcc---cccchhhhHHHHHHHhcCCCceEEEEecC-CHHHHHHHHHCCCCEEEECHHHHCCCC-HHHHH
Confidence 012222 11122346778888877889999999999 566899999999999999999998888 34433
|
| >d1jvna1 c.1.2.1 (A:230-552) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]
Probab=97.62 E-value=3e-05 Score=69.68 Aligned_cols=81 Identities=14% Similarity=0.090 Sum_probs=59.0
Q ss_pred HHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHH-----------HHHHHH
Q 020423 218 IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVD-----------EVNAAL 286 (326)
Q Consensus 218 ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~-----------da~~~l 286 (326)
+++.+++.|+|.|++-.-++...+.. .....++.+.++.++. .+||...|||+|.+ .|.+++
T Consensus 53 ~a~~~~~~gaDeL~ivDidas~~~~~------~~~~~~~~I~~i~~~~-~vPi~vGGGIrsi~di~~~~~~~~e~A~~ll 125 (323)
T d1jvna1 53 LAQKYYQQGADEVTFLNITSFRDCPL------KDTPMLEVLKQAAKTV-FVPLTVGGGIKDIVDVDGTKIPALEVASLYF 125 (323)
T ss_dssp HHHHHHHTTCSEEEEEEEC---CCCG------GGCHHHHHHHHHTTTC-CSCEEEESSCSCEECTTCCEECHHHHHHHHH
T ss_pred HHHHHHHCCCCEEEEEECcCCCCCcC------CCchHHHHHHhhcccc-ceeEEEecCcccHHHhhhccchhhHHHHHHH
Confidence 45677889999999854332211110 0122367777777665 89999999999965 468899
Q ss_pred HhCCChhhhhHHHHhCCch
Q 020423 287 RKGAHHVMVGRAAYQNPWY 305 (326)
Q Consensus 287 ~~GaD~V~iGRall~dP~l 305 (326)
+.|||-|.+|++++.||++
T Consensus 126 ~~GadKVvI~T~ai~~p~~ 144 (323)
T d1jvna1 126 RSGADKVSIGTDAVYAAEK 144 (323)
T ss_dssp HHTCSEEEECHHHHHHHHH
T ss_pred HcCCCeEEechHHhhChHH
Confidence 9999999999999987774
|
| >d1xi3a_ c.1.3.1 (A:) Thiamin phosphate synthase {Archaeon (Pyrococcus furiosus) [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Thiamin phosphate synthase family: Thiamin phosphate synthase domain: Thiamin phosphate synthase species: Archaeon (Pyrococcus furiosus) [TaxId: 2261]
Probab=97.59 E-value=5.2e-05 Score=63.76 Aligned_cols=74 Identities=14% Similarity=0.071 Sum_probs=57.1
Q ss_pred hhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhC
Q 020423 223 SLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN 302 (326)
Q Consensus 223 e~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~d 302 (326)
.+.|+||+.++.-...... +..++..++.+.++.+.. ++||++-||| +.+++.++++.|||+|.+.++++..
T Consensus 116 ~~~g~DYi~~gpvf~T~tk------~~~~~~g~~~l~~~~~~~-~~Pv~AiGGI-~~~ni~~~~~~Ga~gvAvis~I~~~ 187 (206)
T d1xi3a_ 116 EKKGADYLGAGSVFPTKTK------EDARVIGLEGLRKIVESV-KIPVVAIGGI-NKDNAREVLKTGVDGIAVISAVMGA 187 (206)
T ss_dssp HHHTCSEEEEECSSCC----------CCCCCHHHHHHHHHHHC-SSCEEEESSC-CTTTHHHHHTTTCSEEEESHHHHTS
T ss_pred HhcCCCEEEeccccccccc------cccccccHHHHHHHHHhc-CCCEEEECCC-CHHHHHHHHHhCCCEEEEhHHHHCC
Confidence 3569999999865321110 122456788888888765 8999999999 8888999999999999999999986
Q ss_pred Cc
Q 020423 303 PW 304 (326)
Q Consensus 303 P~ 304 (326)
++
T Consensus 188 ~d 189 (206)
T d1xi3a_ 188 ED 189 (206)
T ss_dssp SS
T ss_pred CC
Confidence 55
|
| >d1rvka1 c.1.11.2 (A:127-381) Hypothetical protein Atu3453 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Hypothetical protein Atu3453 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.57 E-value=0.0013 Score=56.45 Aligned_cols=138 Identities=10% Similarity=0.042 Sum_probs=95.6
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHH
Q 020423 134 SNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQ 213 (326)
Q Consensus 134 ~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e 213 (326)
.+++++++.|+.+.+.||..+-++.+.+... ++ .+.+.-.+.+++||+.+|..+.+.+-.+ ..-+.++
T Consensus 22 ~tpe~~~~~a~~~~~~Gf~~~Kik~g~~~~~------~~----~~~~~d~~~v~avR~~~G~~~~l~vDaN--~~~~~~~ 89 (255)
T d1rvka1 22 ATPEDYGRFAETLVKRGYKGIKLHTWMPPVS------WA----PDVKMDLKACAAVREAVGPDIRLMIDAF--HWYSRTD 89 (255)
T ss_dssp SSHHHHHHHHHHHHHHTCSEEEEECCCTTST------TC----CCHHHHHHHHHHHHHHHCTTSEEEEECC--TTCCHHH
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEcCCCCccc------cc----cCHHHHHHHHHHHHHHcCCccceecccc--cccccch
Confidence 4689999999999999999999998765421 12 3567777888999998755443333332 1123555
Q ss_pred HHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHH-HHHHHHHhC-CC
Q 020423 214 LCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVD-EVNAALRKG-AH 291 (326)
Q Consensus 214 ~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~-da~~~l~~G-aD 291 (326)
.+++ .+.+++.++.++. . .+++.+++.++++++.. ++||.+...+.+.. +..++++.| +|
T Consensus 90 A~~~-~~~l~~~~l~~iE----e------------P~~~~d~~~~~~l~~~~-~~pI~~~E~~~~~~~~~~~~i~~~~~d 151 (255)
T d1rvka1 90 ALAL-GRGLEKLGFDWIE----E------------PMDEQSLSSYKWLSDNL-DIPVVGPESAAGKHWHRAEWIKAGACD 151 (255)
T ss_dssp HHHH-HHHHHTTTCSEEE----C------------CSCTTCHHHHHHHHHHC-SSCEEECSSCSSHHHHHHHHHHTTCCS
T ss_pred hhhh-hhhcccchhhhhc----C------------CcccccHHHHHHHHHhc-ccceeehhhcccchhhhhhhhhhchhh
Confidence 5553 4566788998874 1 12334577777887775 89998888888865 667888855 88
Q ss_pred hhhhhHHHHh
Q 020423 292 HVMVGRAAYQ 301 (326)
Q Consensus 292 ~V~iGRall~ 301 (326)
.+++--.-+.
T Consensus 152 ii~~d~~~~G 161 (255)
T d1rvka1 152 ILRTGVNDVG 161 (255)
T ss_dssp EEEECHHHHT
T ss_pred hccccccccc
Confidence 8887665544
|
| >d1i4na_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Indole-3-glycerophosphate synthase, IPGS species: Thermotoga maritima [TaxId: 2336]
Probab=97.52 E-value=0.00038 Score=59.85 Aligned_cols=55 Identities=20% Similarity=0.293 Sum_probs=41.9
Q ss_pred HHHHHHhcCC-CceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhCCchhHHhHHHh
Q 020423 257 YYYALLRDFP-DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTA 313 (326)
Q Consensus 257 ~i~~i~~~~~-~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~dP~l~~~~i~~~ 313 (326)
...++....+ +..+|+-+||.+++++..+ ..|+|+|.||.++|..++ ....+++.
T Consensus 191 ~~~~L~~~ip~~~~~IaESGI~~~~d~~~l-~~G~davLIG~sLm~~~~-p~~~l~~l 246 (251)
T d1i4na_ 191 VLWELLPLVPDDTVVVAESGIKDPRELKDL-RGKVNAVLVGTSIMKAEN-PRRFLEEM 246 (251)
T ss_dssp HHHHHGGGSCTTSEEEEESCCCCGGGHHHH-TTTCSEEEECHHHHHCSS-HHHHHHHH
T ss_pred HHHHHHhhCCCCCEEEEcCCCCCHHHHHHH-HhCCCEEEEChHHhCCCC-HHHHHHHH
Confidence 3445555544 6889999999999998765 689999999999999777 34444443
|
| >d1vzwa1 c.1.2.1 (A:2-240) Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA species: Streptomyces coelicolor [TaxId: 1902]
Probab=97.47 E-value=9.8e-05 Score=63.44 Aligned_cols=82 Identities=21% Similarity=0.239 Sum_probs=64.4
Q ss_pred HHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHH
Q 020423 219 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRA 298 (326)
Q Consensus 219 a~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRa 298 (326)
++.+.+.|+|.|++-.-++...+ +.++..+.++.+.. .+||...|||++.++++++++.|+|-|.+++.
T Consensus 37 a~~~~~~ga~~l~i~DLd~~~~~----------~~~~~~i~~i~~~~-~~pi~vGGGIrs~~~~~~ll~~Ga~kVvi~s~ 105 (239)
T d1vzwa1 37 ALAWQRSGAEWLHLVDLDAAFGT----------GDNRALIAEVAQAM-DIKVELSGGIRDDDTLAAALATGCTRVNLGTA 105 (239)
T ss_dssp HHHHHHTTCSEEEEEEHHHHHTS----------CCCHHHHHHHHHHC-SSEEEEESSCCSHHHHHHHHHTTCSEEEECHH
T ss_pred HHHHHHcCCCEEEEEeecccccc----------cchHHHHHHHHhhc-CcceEeecccccchhhhhhhccccccchhhHH
Confidence 45566789999999754322111 12467788887776 89999999999999999999999999999999
Q ss_pred HHhCCchhHHhHH
Q 020423 299 AYQNPWYTLGHVD 311 (326)
Q Consensus 299 ll~dP~l~~~~i~ 311 (326)
++.||.++.+..+
T Consensus 106 ~~~~~~~~~~~~~ 118 (239)
T d1vzwa1 106 ALETPEWVAKVIA 118 (239)
T ss_dssp HHHCHHHHHHHHH
T ss_pred hhhccccchhhhc
Confidence 9999996544444
|
| >d1piia2 c.1.2.4 (A:1-254) Indole-3-glycerophosphate synthase, IPGS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Indole-3-glycerophosphate synthase, IPGS species: Escherichia coli [TaxId: 562]
Probab=97.41 E-value=0.0015 Score=56.12 Aligned_cols=45 Identities=22% Similarity=0.226 Sum_probs=37.7
Q ss_pred CceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhCCchhHHhHHHh
Q 020423 267 DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTA 313 (326)
Q Consensus 267 ~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~dP~l~~~~i~~~ 313 (326)
+..+|+-+||.+++|+..+ ..|+|+|.||.+++..|+ ....+++.
T Consensus 208 ~~~~VsESGI~~~~d~~~l-~~g~davLiGeslm~~~d-p~~~l~~L 252 (254)
T d1piia2 208 NVTVISESGINTYAQVREL-SHFANGFLIGSALMAHDD-LHAAVRRV 252 (254)
T ss_dssp TSEEEEESCCCCHHHHHHH-TTTCSEEEECHHHHTCSC-HHHHHHHH
T ss_pred CCEEEEcCCCCCHHHHHHH-HcCCCEEEEChHHhCCCC-HHHHHHHH
Confidence 6789999999999999775 679999999999999998 45555443
|
| >d1p1xa_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Deoxyribose-phosphate aldolase DeoC species: Escherichia coli [TaxId: 562]
Probab=97.37 E-value=0.00035 Score=60.25 Aligned_cols=142 Identities=15% Similarity=0.151 Sum_probs=88.7
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC-CCcEEEEeccCCCCCccHH
Q 020423 134 SNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYN 212 (326)
Q Consensus 134 ~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~-~~pv~vK~r~g~~~~~~~~ 212 (326)
...+.-...++.+.+.|+|.||+=. + ||.-...+.+.+.+.++++++.+ ..++.+|+-+-... -+-+
T Consensus 81 ~~~e~K~~E~~~Ai~~GAdEID~Vi-----n------~~~l~~g~~~~v~~ei~~v~~~~~~~~~~lKVIlEt~~-Ltd~ 148 (250)
T d1p1xa_ 81 DDIDIALAETRAAIAYGADEVDVVF-----P------YRALMAGNEQVGFDLVKACKEACAAANVLLKVIIETGE-LKDE 148 (250)
T ss_dssp SCHHHHHHHHHHHHHHTCSEEEEEC-----C------HHHHHTTCCHHHHHHHHHHHHHHHHTTCEEEEECCHHH-HCSH
T ss_pred ccHhHHHHHHHHHHHcCCCeEEEee-----c------chhhccccHHHHHHHHHHHHHhhccCCceEEEEEeccc-cCcH
Confidence 3456677778888899999999853 1 34434455677777777777765 34556665552100 0112
Q ss_pred HHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcC---CCceEEEeCCCCCHHHHHHHHHhC
Q 020423 213 QLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF---PDLTFTLNGGINTVDEVNAALRKG 289 (326)
Q Consensus 213 e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~---~~iPVIa~GgI~s~~da~~~l~~G 289 (326)
+......++..++|+|+|-.+.+... .|. .+.+...+.+..++. .++.|=++|||+|.+++.++++.|
T Consensus 149 e~i~~a~~ia~~aGadFvKTSTG~~~-~ga--------t~~~v~~m~~~i~~~~~~~~vgIKasGGIrt~~~a~~~i~~g 219 (250)
T d1p1xa_ 149 ALIRKASEISIKAGADFIKTSTGKVA-VNA--------TPESARIMMEVIRDMGVEKTVGFKPAGGVRTAEDAQKYLAIA 219 (250)
T ss_dssp HHHHHHHHHHHHTTCSEEECCCSCSS-CCC--------CHHHHHHHHHHHHHHTCTTTCEEECBSSCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcCeEEecCCcCC-CCC--------CHHHHHHHHHHhhhhccCcceeeEecCCCCCHHHHHHHHHHH
Confidence 33333345666899999987765421 111 122334444444331 268899999999999999999988
Q ss_pred CChhhhh
Q 020423 290 AHHVMVG 296 (326)
Q Consensus 290 aD~V~iG 296 (326)
++.+...
T Consensus 220 a~~iG~~ 226 (250)
T d1p1xa_ 220 DELFGAD 226 (250)
T ss_dssp HHHHCTT
T ss_pred HHHhCcc
Confidence 7765544
|
| >d2tpsa_ c.1.3.1 (A:) Thiamin phosphate synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Thiamin phosphate synthase family: Thiamin phosphate synthase domain: Thiamin phosphate synthase species: Bacillus subtilis [TaxId: 1423]
Probab=97.36 E-value=0.00018 Score=61.27 Aligned_cols=76 Identities=17% Similarity=0.031 Sum_probs=55.4
Q ss_pred hhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhC
Q 020423 223 SLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN 302 (326)
Q Consensus 223 e~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~d 302 (326)
.+.|+||+.+..-...... + ...++..++.+..+.+...++||++-||| +++++.++++.|+|+|++.++++..
T Consensus 132 ~~~g~DYi~~gpvf~T~sK--~---~~~~~~~~~~~~~~~~~~~~~Pv~AiGGI-~~~ni~~l~~~Ga~giAvis~I~~a 205 (226)
T d2tpsa_ 132 EEDGADYVGLGPIYPTETK--K---DTRAVQGVSLIEAVRRQGISIPIVGIGGI-TIDNAAPVIQAGADGVSMISAISQA 205 (226)
T ss_dssp HHHTCSEEEECCSSCCCSS--S---SCCCCCTTHHHHHHHHTTCCCCEEEESSC-CTTTSHHHHHTTCSEEEESHHHHTS
T ss_pred HhCcCCeEEEecccccccc--c---ccccccccchhHHHHHhcCCCCEEEecCC-CHHHHHHHHHhCCCEEEEhHHhhcC
Confidence 3479999998764321111 0 11123335666666655568999999999 8899999999999999999999986
Q ss_pred Cc
Q 020423 303 PW 304 (326)
Q Consensus 303 P~ 304 (326)
++
T Consensus 206 ~d 207 (226)
T d2tpsa_ 206 ED 207 (226)
T ss_dssp SC
T ss_pred CC
Confidence 66
|
| >d1rpxa_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Potato (Solanum tuberosum) [TaxId: 4113]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: D-ribulose-5-phosphate 3-epimerase domain: D-ribulose-5-phosphate 3-epimerase species: Potato (Solanum tuberosum) [TaxId: 4113]
Probab=97.35 E-value=0.0021 Score=54.58 Aligned_cols=160 Identities=15% Similarity=0.214 Sum_probs=101.1
Q ss_pred CCCcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecC--C--CCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEE
Q 020423 123 EQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNC--G--CPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVS 198 (326)
Q Consensus 123 ~~~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~--g--~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~ 198 (326)
..-.+..+|...+...+.+..+.+.++|+|.+-+-. | +|+. .|| + ++++.+++.++.|+.
T Consensus 9 ~~~~IspSIl~~d~~~l~~~i~~l~~~g~d~iHiDImDG~Fvpn~------t~~------~----~~v~~i~~~t~~~~d 72 (230)
T d1rpxa_ 9 SDIIVSPSILSANFSKLGEQVKAIEQAGCDWIHVDVMDGRFVPNI------TIG------P----LVVDSLRPITDLPLD 72 (230)
T ss_dssp TSCEEEEBGGGSCGGGHHHHHHHHHHTTCCCEEEEEEBSSSSSCB------CCC------H----HHHHHHGGGCCSCEE
T ss_pred CCeEEEcchhhcCHHHHHHHHHHHHHcCCCEEEEeCccCCcCCcc------ccC------h----HHHhhhhhccCceee
Confidence 344678889999999999999999999999766642 2 2331 144 3 456677777788877
Q ss_pred EEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCC----------------------------c-------------
Q 020423 199 VKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRK----------------------------A------------- 237 (326)
Q Consensus 199 vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~----------------------------~------------- 237 (326)
+-+-.. + .... +.++ .++|+|.|++|-.. .
T Consensus 73 vHLMv~--~---P~~~---i~~~-~~~g~~~i~~H~E~~~~~~~~~~i~~ik~~g~k~Gialnp~T~~~~l~~~l~~vD~ 143 (230)
T d1rpxa_ 73 VHLMIV--E---PDQR---VPDF-IKAGADIVSVHCEQSSTIHLHRTINQIKSLGAKAGVVLNPGTPLTAIEYVLDAVDL 143 (230)
T ss_dssp EEEESS--S---HHHH---HHHH-HHTTCSEEEEECSTTTCSCHHHHHHHHHHTTSEEEEEECTTCCGGGGTTTTTTCSE
T ss_pred eeeeec--c---hhhh---HHHH-hhcccceeEEeccccccccHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHhhCCE
Confidence 765442 1 1121 1222 34677777776321 0
Q ss_pred -----ccCCCCcCCcCCCCCccHHHHHHH---Hh-cCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhCCchhHH
Q 020423 238 -----LLNGISPAENRTIPPLKYEYYYAL---LR-DFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLG 308 (326)
Q Consensus 238 -----~~~g~~~~~~~~~~~~~~~~i~~i---~~-~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~dP~l~~~ 308 (326)
...|.++. ..-+..++.+.++ .+ ...++.|..-||| +.+.+..+.+.|||.+.+|++++.+++ +.+
T Consensus 144 VllM~V~PGf~GQ---~f~~~~~~kI~~~~~~~~~~~~~~~I~vDGGI-n~~~i~~l~~~Gad~~V~GS~if~~~d-~~~ 218 (230)
T d1rpxa_ 144 VLIMSVNPGFGGQ---SFIESQVKKISDLRKICAERGLNPWIEVDGGV-GPKNAYKVIEAGANALVAGSAVFGAPD-YAE 218 (230)
T ss_dssp EEEESSCTTCSSC---CCCTTHHHHHHHHHHHHHHHTCCCEEEEESSC-CTTTHHHHHHHTCCEEEESHHHHTSSC-HHH
T ss_pred EEEEEecCCcccc---hhhhhhHHHHHHHHHHHHhcCCceEEEEECCc-CHHHHHHHHHcCCCEEEEChHHHCCCC-HHH
Confidence 00022221 1112224444443 22 2357899999999 566899999999999999999999998 455
Q ss_pred hHHH
Q 020423 309 HVDT 312 (326)
Q Consensus 309 ~i~~ 312 (326)
.+++
T Consensus 219 ~i~~ 222 (230)
T d1rpxa_ 219 AIKG 222 (230)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5554
|
| >d1ujpa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Trp synthase alpha-subunit species: Thermus thermophilus [TaxId: 274]
Probab=97.30 E-value=0.00031 Score=61.23 Aligned_cols=173 Identities=12% Similarity=0.119 Sum_probs=91.9
Q ss_pred CCCCCcEEE-EecC--CCHHHHHHHHHHHHHCCCCEEEecCC--CCCCc---ccCCCCcccccc--CCHHHHHHHHHHHH
Q 020423 121 SPEQHPIVL-QIGG--SNLDNLAKATELANAYNYDEINLNCG--CPSPK---VAGHGCFGVSLM--LDPKFVGEAMSVIA 190 (326)
Q Consensus 121 ~~~~~piiv-QL~g--~~~~~f~~aA~~a~~aG~d~Iein~g--~P~~~---~~r~d~yGgsl~--~r~~~l~eiv~avr 190 (326)
+.++++..+ =+.. .+.+.+.++.+.+.+ |+|.|||-+- -|... +++. .--+|. .+.+.+.++++.+|
T Consensus 11 k~~~~~ali~yitaG~P~~~~~~~~l~~l~~-gaDiiElGiPfSDP~ADGpvIq~A--~~rAL~~G~~~~~~~~~~~~~r 87 (271)
T d1ujpa_ 11 RSEGRAALIPYLTAGFPSREGFLQAVEEVLP-YADLLEIGLPYSDPLGDGPVIQRA--SELALRKGMSVQGALELVREVR 87 (271)
T ss_dssp HHTTBCEEEEEEETTSSCHHHHHHHHHHHGG-GCSSEEEECCCCC----CHHHHHH--HHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHcCCceEEEEEeCcCCCHHHHHHHHHHHHc-CCCEEEeCCCCCCcccCCCeeeee--eeeccccccchhhHHHHHHHHh
Confidence 335555433 3333 467888888887765 9999999653 23210 0000 000111 36788899999999
Q ss_pred hcCCCcEEEEecc------CCCCC----------------ccHHHHHHHHHHHhhhCCccEEEEecCC-c----------
Q 020423 191 ANTNVPVSVKCRI------GVDDH----------------DSYNQLCDFIYKVSSLSPTRHFIIHSRK-A---------- 237 (326)
Q Consensus 191 ~~~~~pv~vK~r~------g~~~~----------------~~~~e~~~~ia~~le~~Gvd~I~v~~~~-~---------- 237 (326)
+..+.|+.+=.-. |.+.. ...+|..+ +...+.+.|++.|.+-.-+ .
T Consensus 88 ~~~~~pivlm~Y~N~i~~~G~~~F~~~~~~aGvdGliipDLP~ee~~~-~~~~~~~~gl~~I~lvsPtT~~eRi~~i~~~ 166 (271)
T d1ujpa_ 88 ALTEKPLFLMTYLNPVLAWGPERFFGLFKQAGATGVILPDLPPDEDPG-LVRLAQEIGLETVFLLAPTSTDARIATVVRH 166 (271)
T ss_dssp HHCCSCEEEECCHHHHHHHCHHHHHHHHHHHTCCEEECTTCCGGGCHH-HHHHHHHHTCEEECEECTTCCHHHHHHHHTT
T ss_pred cccCCcEEEEeechhhhhCCchhHhHHHhhcCceeEeccchhhhhHHH-HHHHhhccccceeeccCCCcchHHHHHHHHh
Confidence 8888887663211 10000 00111111 2223344566665432111 0
Q ss_pred --------ccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHh
Q 020423 238 --------LLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 301 (326)
Q Consensus 238 --------~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~ 301 (326)
...|.++... ..+....+.+.+++ +..++||+..=||.+++++..+ .+||+|.||++++.
T Consensus 167 s~GFIY~Vs~~GvTG~~~-~~~~~~~~~i~~ik-~~t~~Pv~vGFGIs~~e~v~~~--~~ADGvIVGSAiV~ 234 (271)
T d1ujpa_ 167 ATGFVYAVSVTGVTGMRE-RLPEEVKDLVRRIK-ARTALPVAVGFGVSGKATAAQA--AVADGVVVGSALVR 234 (271)
T ss_dssp CCSCEEEECC-------------CCHHHHHHHH-TTCCSCEEEESCCCSHHHHHHH--TTSSEEEECHHHHH
T ss_pred CcchhhhhcccCccCccc-cchHHHHHHHHhhh-ccccCCeEEeCCCCCHHHHHHh--CCCCEEEEcHHHHH
Confidence 0112223211 11222245666665 4569999999999999999764 58999999999873
|
| >d2chra1 c.1.11.2 (A:127-370) Chlormuconate cycloisomerase {Alcaligenes eutrophus [TaxId: 106590]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Chlormuconate cycloisomerase species: Alcaligenes eutrophus [TaxId: 106590]
Probab=97.24 E-value=0.0032 Score=53.60 Aligned_cols=139 Identities=9% Similarity=0.063 Sum_probs=96.2
Q ss_pred cEEEEecC-CCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCC--CcEEEEec
Q 020423 126 PIVLQIGG-SNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTN--VPVSVKCR 202 (326)
Q Consensus 126 piivQL~g-~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~--~pv~vK~r 202 (326)
|+...+.. ..+++++++++.+.+.||+.+-+.+|.. +++.=.+.++++|+.++ ..+.+-..
T Consensus 7 P~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~KiKvG~~----------------~~~~D~~~v~~ir~~~g~~~~l~vDaN 70 (244)
T d2chra1 7 PIAWTLASGDTKRDLDSAVEMIERRRHNRFKVKLGFR----------------SPQDDLIHMEALSNSLGSKAYLRVDVN 70 (244)
T ss_dssp EBEEEECSSCHHHHHHHHHHHHHTTSCCEEEEECSSS----------------CHHHHHHHHHHHHHHTTTTSEEEEECT
T ss_pred EEEEEEcCCCcHHHHHHHHHHHHhCCCCEEEEEcCCC----------------CHHHHHHHHHHHHHhcCCCceEEEeCC
Confidence 44445543 4567788888999999999999976422 23333567888888874 44545444
Q ss_pred cCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHH
Q 020423 203 IGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEV 282 (326)
Q Consensus 203 ~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da 282 (326)
.+|+ .++..++ .+.+++.++.++. . .+++.+++.++++++.. ++||.+.-.+.+.+++
T Consensus 71 ~~~~----~~~A~~~-~~~l~~~~i~~iE----e------------P~~~~d~~~~~~l~~~~-~ipia~~E~~~~~~~~ 128 (244)
T d2chra1 71 QAWD----EQVASVY-IPELEALGVELIE----Q------------PVGRENTQALRRLSDNN-RVAIMADESLSTLASA 128 (244)
T ss_dssp TCCC----THHHHHH-HHHHHTTTCCEEE----C------------CSCSSCHHHHHHHHHHC-SSEEEESSSCCSHHHH
T ss_pred CCcc----hHHHHHH-HHHHhhhhHHHHh----h------------hhhhccchhhhhhccce-eeeeeecccccccchh
Confidence 4453 3344553 4556788887764 1 12333577788888775 8999999999999999
Q ss_pred HHHHHhC-CChhhhhHHHHhC
Q 020423 283 NAALRKG-AHHVMVGRAAYQN 302 (326)
Q Consensus 283 ~~~l~~G-aD~V~iGRall~d 302 (326)
.++++.+ +|.|++--..+..
T Consensus 129 ~~~i~~~~~d~v~~d~~~~GG 149 (244)
T d2chra1 129 FDLARDRSVDVFSLKLCNMGG 149 (244)
T ss_dssp HHHHTTTCCSEECCCHHHHTS
T ss_pred hhhhhcceeEEEeeccccccc
Confidence 9999965 9999987665543
|
| >d1ojxa_ c.1.10.1 (A:) Archaeal fructose 1,6-bisphosphate aldolase {Archaeon Thermoproteus tenax [TaxId: 2271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Archaeal fructose 1,6-bisphosphate aldolase species: Archaeon Thermoproteus tenax [TaxId: 2271]
Probab=97.23 E-value=0.0043 Score=53.20 Aligned_cols=143 Identities=13% Similarity=0.113 Sum_probs=82.6
Q ss_pred HHHHHHCCCCEEEecCCCCCCcccCCCCcccccc-CCHHHHHHHHHHHHhcCCCcEEEEecc-C--CCCCccHHHHHHHH
Q 020423 143 TELANAYNYDEINLNCGCPSPKVAGHGCFGVSLM-LDPKFVGEAMSVIAANTNVPVSVKCRI-G--VDDHDSYNQLCDFI 218 (326)
Q Consensus 143 A~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~-~r~~~l~eiv~avr~~~~~pv~vK~r~-g--~~~~~~~~e~~~~i 218 (326)
++.+.+.|+|+|-+++- ||...+ +..+.+.+++++. +..++|+.+-.-+ + ..+..+. +.+...
T Consensus 96 ve~a~rlGadaV~~~v~-----------~g~~~e~~~l~~~~~v~~e~-~~~glP~v~e~~p~g~~~~~~~~~-~~v~~a 162 (251)
T d1ojxa_ 96 VEEAVSLGASAVGYTIY-----------PGSGFEWKMFEELARIKRDA-VKFDLPLVVWSYPRGGKVVNETAP-EIVAYA 162 (251)
T ss_dssp HHHHHHTTCSEEEEEEC-----------TTSTTHHHHHHHHHHHHHHH-HHHTCCEEEEECCCSTTCCCTTCH-HHHHHH
T ss_pred HHHHHhchhceEEEEEe-----------CCCCchHHHHHHHHHHHHHH-HHcCCeEEEEEeecCCccccCCCH-HHHHHH
Confidence 45577889999988752 111111 1233344444443 2348998775432 1 1222233 344445
Q ss_pred HHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCC--CHHHHH----HHHHhCCCh
Q 020423 219 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGIN--TVDEVN----AALRKGAHH 292 (326)
Q Consensus 219 a~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~--s~~da~----~~l~~GaD~ 292 (326)
+++..+.|+|.+-+.- |.+.+.+.++.+....+||+..||-. +.++.. .+++.||.+
T Consensus 163 aria~ElGaDivK~~~-----------------p~~~~~~~~~v~~a~~~pv~~~gG~~~~~~~~~l~~~~~a~~~Ga~G 225 (251)
T d1ojxa_ 163 ARIALELGADAMKIKY-----------------TGDPKTFSWAVKVAGKVPVLMSGGPKTKTEEDFLKQVEGVLEAGALG 225 (251)
T ss_dssp HHHHHHHTCSEEEECC-----------------CSSHHHHHHHHHHTTTSCEEEECCSCCSSHHHHHHHHHHHHHTTCCE
T ss_pred HHHHHHhCCCEEEecC-----------------CCcHHHHHHHHHhcCCCceEEeCCCCCCCHHHHHHHHHHHHHCCCcE
Confidence 6677789999997631 12234445555555578888887753 566554 455689999
Q ss_pred hhhhHHHHhCCc--hhHHhHHHhhh
Q 020423 293 VMVGRAAYQNPW--YTLGHVDTAIY 315 (326)
Q Consensus 293 V~iGRall~dP~--l~~~~i~~~~~ 315 (326)
+.+||.+.++++ -+.+.+...+|
T Consensus 226 ~~~GRni~q~~~p~~~~~al~~ivH 250 (251)
T d1ojxa_ 226 IAVGRNVWQRRDALKFARALAELVY 250 (251)
T ss_dssp EEESHHHHTSTTHHHHHHHHHHHHC
T ss_pred EeechhhhCcCcHHHHHHHHHHHhc
Confidence 999999996554 34444444443
|
| >d1tzza1 c.1.11.2 (A:1146-1392) Hypothetical protein Bll6730 {Bradyrhizobium japonicum [TaxId: 375]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Hypothetical protein Bll6730 species: Bradyrhizobium japonicum [TaxId: 375]
Probab=97.21 E-value=0.0052 Score=52.30 Aligned_cols=125 Identities=13% Similarity=0.096 Sum_probs=87.9
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCc--EEEEeccCCCCCcc
Q 020423 133 GSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVP--VSVKCRIGVDDHDS 210 (326)
Q Consensus 133 g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~p--v~vK~r~g~~~~~~ 210 (326)
+.+++++.+.++.+.+.||+.+-++.|. .+.+.-.+.++++|+.++.. +.+-...+| +
T Consensus 18 ~~~~~~~~~~~~~~~~~Gf~~~Kikvg~----------------~~~~~di~~v~~vr~~~g~~~~l~vDan~~~----~ 77 (247)
T d1tzza1 18 GKGLSMLRGEMRGYLDRGYNVVKMKIGG----------------APIEEDRMRIEAVLEEIGKDAQLAVDANGRF----N 77 (247)
T ss_dssp --CHHHHHHHHHHHHTTTCSEEEEECSS----------------SCHHHHHHHHHHHHHHHTTTCEEEEECTTCC----C
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEEECCC----------------CCHHHHHHHHHHHHHhccCCceEEecccccc----c
Confidence 4578999999999999999999997542 23555667788888877544 434333333 3
Q ss_pred HHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCC
Q 020423 211 YNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGA 290 (326)
Q Consensus 211 ~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~Ga 290 (326)
.++.++ +.+.+++.++.++. . .+++.+++.++++++.. ++||.+.-.+.+.++..++++.||
T Consensus 78 ~~~Ai~-~~~~l~~~~i~wiE----e------------P~~~~d~~~~~~l~~~~-~ipia~gE~~~~~~~~~~~i~~~a 139 (247)
T d1tzza1 78 LETGIA-YAKMLRDYPLFWYE----E------------VGDPLDYALQAALAEFY-PGPMATGENLFSHQDARNLLRYGG 139 (247)
T ss_dssp HHHHHH-HHHHHTTSCCSEEE----C------------CSCTTCHHHHHHHTTTC-CSCEEECTTCCSHHHHHHHHHHSC
T ss_pred chhHHH-HHhhcchhhhhhhc----c------------ccccccchhhhhhhhcc-ccccccchhhhhhHHHHHHHHccC
Confidence 556666 45667888888874 1 12233577777776654 899998889999999999999774
Q ss_pred -----Chhhh
Q 020423 291 -----HHVMV 295 (326)
Q Consensus 291 -----D~V~i 295 (326)
|.+++
T Consensus 140 ~~~~~Di~~~ 149 (247)
T d1tzza1 140 MRPDRDWLQF 149 (247)
T ss_dssp CCTTTCEECC
T ss_pred CcCcceeEee
Confidence 56665
|
| >d1qo2a_ c.1.2.1 (A:) Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA species: Thermotoga maritima [TaxId: 2336]
Probab=97.11 E-value=0.00019 Score=61.66 Aligned_cols=82 Identities=12% Similarity=0.185 Sum_probs=59.1
Q ss_pred HHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhH
Q 020423 218 IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGR 297 (326)
Q Consensus 218 ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGR 297 (326)
+++.+++.|+|.+++-.-++...+ .+.+...+ +..++. .+|+...|||++.++++++++.|||-|.+++
T Consensus 35 ~a~~~~~~g~~~l~ivDLda~~~~---------~~~~~~~~-~~~~~~-~~pl~~gGGI~s~~~~~~~~~~Ga~kVvi~s 103 (241)
T d1qo2a_ 35 LVEKLIEEGFTLIHVVDLSNAIEN---------SGENLPVL-EKLSEF-AEHIQIGGGIRSLDYAEKLRKLGYRRQIVSS 103 (241)
T ss_dssp HHHHHHHTTCCCEEEEEHHHHHHC---------CCTTHHHH-HHGGGG-GGGEEEESSCCSHHHHHHHHHTTCCEEEECH
T ss_pred HHHHHHHCCCCEEEEEeccccccc---------CCcchhhe-ehhccc-ccchhhhhhhhhhhhhhhccccccceEecCc
Confidence 355667789999998643322111 11123333 334444 5799999999999999999999999999999
Q ss_pred HHHhCCchhHHhHH
Q 020423 298 AAYQNPWYTLGHVD 311 (326)
Q Consensus 298 all~dP~l~~~~i~ 311 (326)
+++.||.+ .....
T Consensus 104 ~~~~~~~~-~~~~~ 116 (241)
T d1qo2a_ 104 KVLEDPSF-LKSLR 116 (241)
T ss_dssp HHHHCTTH-HHHHH
T ss_pred ccccCchh-hhhhc
Confidence 99999995 44443
|
| >d1hg3a_ c.1.1.1 (A:) Triosephosphate isomerase {Archaeon Pyrococcus woesei [TaxId: 2262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Triosephosphate isomerase (TIM) family: Triosephosphate isomerase (TIM) domain: Triosephosphate isomerase species: Archaeon Pyrococcus woesei [TaxId: 2262]
Probab=97.09 E-value=0.0017 Score=54.74 Aligned_cols=54 Identities=15% Similarity=0.190 Sum_probs=46.1
Q ss_pred HHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhCCchhHHhHHHhh
Q 020423 260 ALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAI 314 (326)
Q Consensus 260 ~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~dP~l~~~~i~~~~ 314 (326)
.+.+...++||+..|||.+.+++..+++.|+|+|.||+|.+.-++ |.+.+++..
T Consensus 168 ~i~~~~~~v~vlygGsV~~~n~~~~~~~~g~dGvLVGsAsl~a~d-~~~~~~~l~ 221 (224)
T d1hg3a_ 168 LVKKVNPEVKVLCGAGISTGEDVKKAIELGTVGVLLASGVTKAKD-PEKAIWDLV 221 (224)
T ss_dssp HHHHHCTTSEEEEESSCCSHHHHHHHHHTTCSEEEESHHHHTCSS-HHHHHHHHH
T ss_pred hhhhhccccceEEeCCcCCHHHHHHHHhCCCCEEEEcceeecCcC-HHHHHHHHH
Confidence 333344589999999999999999999999999999999999888 677777654
|
| >d1yeya1 c.1.11.2 (A:184-435) RTS beta protein {Xanthomonas campestris pv. campestris [TaxId: 340]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: RTS beta protein species: Xanthomonas campestris pv. campestris [TaxId: 340]
Probab=97.04 E-value=0.0051 Score=52.49 Aligned_cols=127 Identities=10% Similarity=0.050 Sum_probs=86.0
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHH
Q 020423 133 GSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYN 212 (326)
Q Consensus 133 g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~ 212 (326)
+.+++++.+.++.+.+.||..+-++.|. +++.-.+.+++||+.++..+.+.+-.+ ..-+.+
T Consensus 13 ~~s~ee~~~~a~~~~~~Gf~~~KikvG~-----------------~~~~di~~v~~vr~~~g~~~~l~vDaN--~~~~~~ 73 (252)
T d1yeya1 13 GYSDEKLVRLAKEAVADGFRTIKLKVGA-----------------NVQDDIRRCRLARAAIGPDIAMAVDAN--QRWDVG 73 (252)
T ss_dssp ---CHHHHHHHHHHHHTTCSEEEEECCS-----------------CHHHHHHHHHHHHHHHCSSSEEEEECT--TCCCHH
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEECCC-----------------CHHHHHHHHHHHHHHhCCCceEeeccc--cCcchH
Confidence 4568999999999999999999997642 244456778888887754443333332 112344
Q ss_pred HHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhC-CC
Q 020423 213 QLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKG-AH 291 (326)
Q Consensus 213 e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~G-aD 291 (326)
+..+ +.+.+++.++.++. . .+++.++..+.+++++...+||.+.=.+.++.++.++++.| +|
T Consensus 74 ~A~~-~~~~l~~~~~~~iE----e------------P~~~~d~~~~~~~~~~~~~ipia~gE~~~~~~~~~~~i~~~a~d 136 (252)
T d1yeya1 74 PAID-WMRQLAEFDIAWIE----E------------PTSPDDVLGHAAIRQGITPVPVSTGEHTQNRVVFKQLLQAGAVD 136 (252)
T ss_dssp HHHH-HHHTTGGGCCSCEE----C------------CSCTTCHHHHHHHHHHSTTSCEECCTTCCSHHHHHHHHHHTCCS
T ss_pred HHHH-HHHhhhhcCceeec----C------------CcchhhHHHHHHHhhccCCCceeccccccchhhhhhHhhccccc
Confidence 5555 44566778887774 1 12333466666666665589999888999999999999966 78
Q ss_pred hhhh
Q 020423 292 HVMV 295 (326)
Q Consensus 292 ~V~i 295 (326)
.+++
T Consensus 137 ~~~~ 140 (252)
T d1yeya1 137 LIQI 140 (252)
T ss_dssp EECC
T ss_pred eecc
Confidence 8865
|
| >d1tqja_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Synechocystis sp. PCC 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: D-ribulose-5-phosphate 3-epimerase domain: D-ribulose-5-phosphate 3-epimerase species: Synechocystis sp. PCC 6803 [TaxId: 1148]
Probab=96.96 E-value=0.0029 Score=53.36 Aligned_cols=159 Identities=17% Similarity=0.220 Sum_probs=95.6
Q ss_pred cEEEEecCCCHHHHHHHHHHHHHCCCCEEEecC--CCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEecc
Q 020423 126 PIVLQIGGSNLDNLAKATELANAYNYDEINLNC--GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRI 203 (326)
Q Consensus 126 piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~--g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~ 203 (326)
.+..+|...+...+.+..+++.++|+|.+-+-. |...++ . .+| .++++.+++.++.|+.+-+=.
T Consensus 4 ~IspSil~~d~~~l~~~i~~l~~~g~d~iHiDImDG~Fvpn-~---t~~----------~~~~~~i~~~t~~~~dvHLMv 69 (221)
T d1tqja_ 4 VVAPSILSADFSRLGEEIKAVDEAGADWIHVDVMDGRFVPN-I---TIG----------PLIVDAIRPLTKKTLDVHLMI 69 (221)
T ss_dssp EEEEBGGGSCGGGHHHHHHHHHHTTCSEEEEEEEBSSSSSC-B---CBC----------HHHHHHHGGGCCSEEEEEEES
T ss_pred EEEechhccCHHHHHHHHHHHHHcCCCEEEEECccCCccCc-c---ccC----------cHhHHhhhhccCcceeeeEEE
Confidence 466788888888899999999999999776643 322221 1 134 246777777778887776544
Q ss_pred CCCCCccHHHHHHHHHHHhhhCCccEEEEecC----------------------------Ccc-----------------
Q 020423 204 GVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSR----------------------------KAL----------------- 238 (326)
Q Consensus 204 g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~----------------------------~~~----------------- 238 (326)
. +...+ +.+ +.++|+|.+++|-. +..
T Consensus 70 ~--~P~~~------i~~-~~~~g~~~i~~H~E~~~~~~~~~~~~~i~~~g~~~Gial~p~T~~~~l~~~l~~~d~vlvM~ 140 (221)
T d1tqja_ 70 V--EPEKY------VED-FAKAGADIISVHVEHNASPHLHRTLCQIRELGKKAGAVLNPSTPLDFLEYVLPVCDLILIMS 140 (221)
T ss_dssp S--SGGGT------HHH-HHHHTCSEEEEECSTTTCTTHHHHHHHHHHTTCEEEEEECTTCCGGGGTTTGGGCSEEEEES
T ss_pred e--CHHHH------HHH-HhhccceEEEEeeccccChhhHHHHHHHHHCCCCEEEEecCCCcHHHHHHHHhhhcEEEEEE
Confidence 2 21111 111 12355555555532 100
Q ss_pred -cCCCCcCCcCCCCCccHHHHHHHHh----cCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhCCchhHHhHHH
Q 020423 239 -LNGISPAENRTIPPLKYEYYYALLR----DFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDT 312 (326)
Q Consensus 239 -~~g~~~~~~~~~~~~~~~~i~~i~~----~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~dP~l~~~~i~~ 312 (326)
..|.++. ...+..++.+.++++ ...++.|..-||| +.+.+.++.+.|||.+.+|++++.+++ ..+.+.+
T Consensus 141 V~pG~~GQ---~f~~~~~~ki~~l~~~~~~~~~~~~I~VDGGI-n~~~i~~l~~~Gad~~V~GS~if~~~d-~~~~i~~ 214 (221)
T d1tqja_ 141 VNPGFGGQ---SFIPEVLPKIRALRQMCDERGLDPWIEVDGGL-KPNNTWQVLEAGANAIVAGSAVFNAPN-YAEAIAG 214 (221)
T ss_dssp SCC----C---CCCGGGHHHHHHHHHHHHHHTCCCEEEEESSC-CTTTTHHHHHHTCCEEEESHHHHTSSC-HHHHHHH
T ss_pred ecCCCCCc---ccchhhHHHHHHHHhhhhccccceEEEEECCc-CHHHHHHHHHcCCCEEEEChHHhCCCC-HHHHHHH
Confidence 0022221 111222454544322 2357889999999 566888999999999999999999888 4555544
|
| >d1jpma1 c.1.11.2 (A:126-359) L-Ala-D/L-Glu epimerase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: L-Ala-D/L-Glu epimerase species: Bacillus subtilis [TaxId: 1423]
Probab=96.95 E-value=0.0066 Score=51.03 Aligned_cols=136 Identities=7% Similarity=-0.003 Sum_probs=89.7
Q ss_pred ecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCcc
Q 020423 131 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDS 210 (326)
Q Consensus 131 L~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~ 210 (326)
+...+|+++.+.++.+.+.||+.+-++.|.+ +.+.-.+.++++|++++..+.+.+-.+ ..-+
T Consensus 11 ~~~~~pe~~~~~a~~~~~~G~~~~Kikig~~----------------~~~~d~~~i~~ir~~~g~~~~i~vD~N--~~~~ 72 (234)
T d1jpma1 11 VSVNSPEEMAADAENYLKQGFQTLKIKVGKD----------------DIATDIARIQEIRKRVGSAVKLRLDAN--QGWR 72 (234)
T ss_dssp ECCSCHHHHHHHHHHHHHTTCCEEEEECSSS----------------CHHHHHHHHHHHHHHHGGGSEEEEECT--TCSC
T ss_pred EcCCCHHHHHHHHHHHHHCCCCEEEEECCCC----------------CHHHHHHHHHHHHHHcCchhhhhhhcc--cccc
Confidence 3446799999999999999999999986422 234445677777777644333332222 2223
Q ss_pred HHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhC-
Q 020423 211 YNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKG- 289 (326)
Q Consensus 211 ~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~G- 289 (326)
.++..++ .+.+++.+.+..-+.. .+++.+++.++++++.. ++||.....+.+..+..++++.+
T Consensus 73 ~~~a~~~-~~~le~~~~~i~~~Ee--------------P~~~~d~~~~~~l~~~~-~~pia~gE~~~~~~~~~~~i~~~~ 136 (234)
T d1jpma1 73 PKEAVTA-IRKMEDAGLGIELVEQ--------------PVHKDDLAGLKKVTDAT-DTPIMADESVFTPRQAFEVLQTRS 136 (234)
T ss_dssp HHHHHHH-HHHHHHTTCCEEEEEC--------------CSCTTCHHHHHHHHHHC-SSCEEESTTCSSHHHHHHHHHTTC
T ss_pred hHHHHHH-HHHHHhccCceeeecC--------------CccccCHHHHHHhhccc-cceeecccccccchhhhhhhccCC
Confidence 4555553 4455665554333221 11233477777777765 89999999999999999999866
Q ss_pred CChhhhhHHHH
Q 020423 290 AHHVMVGRAAY 300 (326)
Q Consensus 290 aD~V~iGRall 300 (326)
+|.+++--..+
T Consensus 137 ~d~v~~d~~~~ 147 (234)
T d1jpma1 137 ADLINIKLMKA 147 (234)
T ss_dssp CSEEEECHHHH
T ss_pred cCeEEEeeecC
Confidence 89888765443
|
| >d2mnra1 c.1.11.2 (A:133-359) Mandelate racemase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Mandelate racemase species: Pseudomonas putida [TaxId: 303]
Probab=96.87 E-value=0.014 Score=48.77 Aligned_cols=124 Identities=10% Similarity=0.056 Sum_probs=86.0
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCC--cEEEEeccCCCCCccH
Q 020423 134 SNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNV--PVSVKCRIGVDDHDSY 211 (326)
Q Consensus 134 ~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~--pv~vK~r~g~~~~~~~ 211 (326)
.+++...+-++++.+.||..+-++.|.+. .+.-.+.++++|+.+|. .+.+-..-+| +.
T Consensus 11 d~~~~~~e~~~~~~~~G~~~~KikvG~~~----------------~~~di~~i~~ir~~~g~~~~l~vDaN~~~----~~ 70 (227)
T d2mnra1 11 DGVKLATERAVTAAELGFRAVKTKIGYPA----------------LDQDLAVVRSIRQAVGDDFGIMVDYNQSL----DV 70 (227)
T ss_dssp CHHHHHHHHHHHHHHTTCSEEEEECCCSS----------------HHHHHHHHHHHHHHHCTTSEEEEECTTCS----CH
T ss_pred CcHHHHHHHHHHHHHCCCCEEEEccCCCC----------------HHHHHHHHHHHHHHhCCCcEEEEeccccC----Ch
Confidence 45777888888999999999999865331 33335667888877644 4444333333 45
Q ss_pred HHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhC-C
Q 020423 212 NQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKG-A 290 (326)
Q Consensus 212 ~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~G-a 290 (326)
++..++ .+.+++.|+.++. . ..++.+++.++++.+.. ++||.+.-.+.+.++..++++.| +
T Consensus 71 ~~A~~~-~~~l~~~~~~~iE----e------------P~~~~~~~~~~~l~~~~-~ipia~gE~~~~~~~~~~~~~~~~~ 132 (227)
T d2mnra1 71 PAAIKR-SQALQQEGVTWIE----E------------PTLQHDYEGHQRIQSKL-NVPVQMGENWLGPEEMFKALSIGAC 132 (227)
T ss_dssp HHHHHH-HHHHHHHTCSEEE----C------------CSCTTCHHHHHHHHHTC-SSCEEECTTCCSHHHHHHHHHTTCC
T ss_pred HHHHHH-HHHhhhchhhhhc----C------------cccccchhhhHHHHHHc-CCccccCceeEeechhhhhHhcCce
Confidence 555554 4466778888874 1 12233577777887664 89999888999999999999965 7
Q ss_pred Chhhh
Q 020423 291 HHVMV 295 (326)
Q Consensus 291 D~V~i 295 (326)
|.+++
T Consensus 133 d~~~~ 137 (227)
T d2mnra1 133 RLAMP 137 (227)
T ss_dssp SEECC
T ss_pred eeeec
Confidence 77665
|
| >d1w0ma_ c.1.1.1 (A:) Triosephosphate isomerase {Thermoproteus tenax [TaxId: 2271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Triosephosphate isomerase (TIM) family: Triosephosphate isomerase (TIM) domain: Triosephosphate isomerase species: Thermoproteus tenax [TaxId: 2271]
Probab=96.81 E-value=0.00099 Score=56.43 Aligned_cols=129 Identities=19% Similarity=0.139 Sum_probs=77.0
Q ss_pred HHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHHHHh
Q 020423 143 TELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVS 222 (326)
Q Consensus 143 A~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia~~l 222 (326)
+..+++.|.+++-++.+- +| -.+ +-+.+.++..++. ++.+.+-+ + +.++.. ..
T Consensus 78 ~~~l~~~g~~~viigHsE-----rR-~~~--------~e~~~~~~~~~~~-gl~~ivcv--g-----e~~~~~-----~~ 130 (226)
T d1w0ma_ 78 LENIKEAGGSGVILNHSE-----AP-LKL--------NDLARLVAKAKSL-GLDVVVCA--P-----DPRTSL-----AA 130 (226)
T ss_dssp HHHHHHHTCCEEEECCTT-----SC-CBH--------HHHHHHHHHHHHT-TCEEEEEE--S-----SHHHHH-----HH
T ss_pred HhhhcccccceEEeechh-----hh-hhc--------cchHHHHHHHHHc-CCEEEEec--C-----chHHhh-----hh
Confidence 456788899999885421 11 111 2244455554332 55554432 2 122221 12
Q ss_pred hhCCccEEEEecCCcccCCCCcCCcCCCCCccHH----HHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHH
Q 020423 223 SLSPTRHFIIHSRKALLNGISPAENRTIPPLKYE----YYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRA 298 (326)
Q Consensus 223 e~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~----~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRa 298 (326)
.+.+-+.|-+......-.|... .+...+ .+..+.+...++||+..|||.+.+++..+++.|+|+|.||+|
T Consensus 131 ~~~~~~iIayep~waIGtg~~~------~~~~~~~i~~~i~~~~~~~~~i~vlygGgV~~~n~~~~~~~~g~dGvLVGsA 204 (226)
T d1w0ma_ 131 AALGPHAVAVEPPELIGTGRAV------SRYKPEAIVETVGLVSRHFPEVSVITGAGIESGDDVAAALRLGTRGVLLASA 204 (226)
T ss_dssp HHTCCSEEEECCGGGTTTSCCH------HHHCHHHHHHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHHTTCSEEEECHH
T ss_pred hccccceeeecchhhccCCCCC------ChhhhhHhhhhhhhhhccCCCceEEEecCcCChHHHHHHhcCCCCEEEechh
Confidence 3467788877655431111110 011112 233334445689999999999999999999999999999999
Q ss_pred HHhCCc
Q 020423 299 AYQNPW 304 (326)
Q Consensus 299 ll~dP~ 304 (326)
.+..++
T Consensus 205 ~l~a~d 210 (226)
T d1w0ma_ 205 AVKAKD 210 (226)
T ss_dssp HHTCSS
T ss_pred eecCCC
Confidence 998666
|
| >d1nu5a1 c.1.11.2 (A:127-369) Chlormuconate cycloisomerase {Pseudomonas sp. p51 [TaxId: 65067]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Chlormuconate cycloisomerase species: Pseudomonas sp. p51 [TaxId: 65067]
Probab=96.76 E-value=0.015 Score=49.23 Aligned_cols=136 Identities=10% Similarity=0.120 Sum_probs=90.5
Q ss_pred cEEEEecCC-CHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCC--cEEEEec
Q 020423 126 PIVLQIGGS-NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNV--PVSVKCR 202 (326)
Q Consensus 126 piivQL~g~-~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~--pv~vK~r 202 (326)
|+...+.+. ..++..++.+.+.+.||+.+-+..|. ++++.-.+.++++|+.++. .+.+-..
T Consensus 7 pv~~~~~~~~~~~~~~e~~~~~~~~G~~~~KiKvG~----------------~~~~~Di~~v~~ir~~~g~~~~l~vDaN 70 (243)
T d1nu5a1 7 PIAWTLASGDTARDIDSALEMIETRRHNRFKVKLGA----------------RTPAQDLEHIRSIVKAVGDRASVRVDVN 70 (243)
T ss_dssp EBCEEECSSCHHHHHHHHHHHHHTTSCSEEEEECSS----------------SCHHHHHHHHHHHHHHHGGGCEEEEECT
T ss_pred EEEEEEcCCChHHHHHHHHHHHHhCCCCEEEEEeCC----------------CCHHHHHHHHHHHHHHhCcccceEEECC
Confidence 444455443 45667777888888899999997542 1244445667777776643 3444333
Q ss_pred cCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHH
Q 020423 203 IGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEV 282 (326)
Q Consensus 203 ~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da 282 (326)
.+| +.++..++ .+.+++.++.++. . .+++.+++.++++++.. ++||.+.-.+.+.++.
T Consensus 71 ~~~----~~~~A~~~-~~~l~~~~~~~iE----e------------P~~~~~~~~~~~l~~~~-~ipIa~gE~~~~~~~~ 128 (243)
T d1nu5a1 71 QGW----DEQTASIW-IPRLEEAGVELVE----Q------------PVPRANFGALRRLTEQN-GVAILADESLSSLSSA 128 (243)
T ss_dssp TCC----CHHHHHHH-HHHHHHHTCCEEE----C------------CSCTTCHHHHHHHHHHC-SSEEEESTTCCSHHHH
T ss_pred CCc----cchhHHHH-HHHhcchhhhhhh----h------------hhhhccccccccchhcc-ccccccccccccchhh
Confidence 333 45565554 4456778888773 1 12333477777887775 8999999999999999
Q ss_pred HHHHHhC-CChhhhhHHH
Q 020423 283 NAALRKG-AHHVMVGRAA 299 (326)
Q Consensus 283 ~~~l~~G-aD~V~iGRal 299 (326)
..+++.| +|.+++--..
T Consensus 129 ~~~i~~~~~d~~~~d~~~ 146 (243)
T d1nu5a1 129 FELARDHAVDAFSLKLCN 146 (243)
T ss_dssp HHHHHTTCCSEEEECHHH
T ss_pred hhcccccccccccccccc
Confidence 9999976 8888776543
|
| >d1wbha1 c.1.10.1 (A:1-213) KDPG aldolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: KDPG aldolase species: Escherichia coli [TaxId: 562]
Probab=96.71 E-value=0.0074 Score=50.36 Aligned_cols=143 Identities=17% Similarity=0.115 Sum_probs=84.6
Q ss_pred CCcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC-CCcEEEEec
Q 020423 124 QHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCR 202 (326)
Q Consensus 124 ~~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~-~~pv~vK~r 202 (326)
..|++.=+...++++....++.+.+.|+..|||.+..|. ..+.++.+++.. +.-+.+.
T Consensus 14 ~~~iipvlr~~~~~~a~~~~~al~~~Gi~~iEitl~tp~-------------------a~~~I~~l~~~~p~~~vGaG-- 72 (213)
T d1wbha1 14 TGPVVPVIVVKKLEHAVPMAKALVAGGVRVLNVTLRTEC-------------------AVDAIRAIAKEVPEAIVGAG-- 72 (213)
T ss_dssp SCSEEEEECCSSGGGHHHHHHHHHHTTCCEEEEESCSTT-------------------HHHHHHHHHHHCTTSEEEEE--
T ss_pred hCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEeCCChh-------------------HHHHHHHHHHHCCCCeeecc--
Confidence 457887788899999999999999999999999875442 134444444433 2222221
Q ss_pred cCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCc--------------------------ccCCCCcCCcCCCCC----
Q 020423 203 IGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKA--------------------------LLNGISPAENRTIPP---- 252 (326)
Q Consensus 203 ~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~--------------------------~~~g~~~~~~~~~~~---- 252 (326)
. . .+.+++. ...++|++++.--+-+. +..|... -...|
T Consensus 73 T-V---~~~~~~~-----~a~~aGa~FivSP~~~~~v~~~a~~~~i~~iPGv~TpsEi~~A~~~G~~~---vKlFPA~~~ 140 (213)
T d1wbha1 73 T-V---LNPQQLA-----EVTEAGAQFAISPGLTEPLLKAATEGTIPLIPGISTVSELMLGMDYGLKE---FKFFPAEAN 140 (213)
T ss_dssp S-C---CSHHHHH-----HHHHHTCSCEEESSCCHHHHHHHHHSSSCEEEEESSHHHHHHHHHTTCCE---EEETTTTTT
T ss_pred c-c---ccHHHHH-----HHHHCCCcEEECCCCCHHHHHHHHhcCCCccCCcCCHHHHHHHHHCCCCE---EEeccchhc
Confidence 0 0 1111111 11124444443211100 0001000 00011
Q ss_pred ccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHH
Q 020423 253 LKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAY 300 (326)
Q Consensus 253 ~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall 300 (326)
....+++.+..-+++++++.+|||+ .+++.+.++.|+.++.+|+.+.
T Consensus 141 Gg~~~lkal~~p~p~~~~~ptGGV~-~~n~~~yl~~g~v~~~~Gs~l~ 187 (213)
T d1wbha1 141 GGVKALQAIAGPFSQVRFCPTGGIS-PANYRDYLALKSVLCIGGSWLV 187 (213)
T ss_dssp THHHHHHHHHTTCTTCEEEEBSSCC-TTTHHHHHTSTTBSCEEEGGGS
T ss_pred ChHHHHHHhcCcccCCceeeeCCCC-HHHHHHHHhCCCEEEEEChhhC
Confidence 1145677777777899999999995 7899999999999999998664
|
| >d1muca1 c.1.11.2 (A:131-372) Muconate-lactonizing enzyme {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Muconate-lactonizing enzyme species: Pseudomonas putida [TaxId: 303]
Probab=96.65 E-value=0.011 Score=50.00 Aligned_cols=135 Identities=12% Similarity=0.059 Sum_probs=88.7
Q ss_pred cEEEEecCCCHH-HHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCC--CcEEEEec
Q 020423 126 PIVLQIGGSNLD-NLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTN--VPVSVKCR 202 (326)
Q Consensus 126 piivQL~g~~~~-~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~--~pv~vK~r 202 (326)
|+...+...+++ +..++.+.+.+-||..+-|.+|.+ +.+.-.+.++++|+.++ ..+.+-..
T Consensus 7 pv~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKvG~~----------------~~~~Di~~i~~ir~~~g~~~~l~vDaN 70 (242)
T d1muca1 7 EVAWTLASGDTARDIAEARHMLEIRRHRVFKLKIGAN----------------PVEQDLKHVVTIKRELGDSASVRVDVN 70 (242)
T ss_dssp EBCEEECCSCHHHHHHHHHHHHHTTSCSEEEEECSSS----------------CHHHHHHHHHHHHHHHGGGSEEEEECT
T ss_pred EEEEEecCCCcHHHHHHHHHHHHHCCCCEEEEEECCC----------------CHHHHHHHHHHHHHHhCCCCEEEEecC
Confidence 444555544554 455666667777999999976522 23344566777777663 44444433
Q ss_pred cCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHH
Q 020423 203 IGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEV 282 (326)
Q Consensus 203 ~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da 282 (326)
-+| +.++.+++ .+.+++.|+.+|. . .+++.+++.+.+++++. ++||.+...+.+..++
T Consensus 71 ~~~----~~~~A~~~-~~~l~~~~i~~iE----e------------P~~~~d~~~~~~L~~~~-~~pIa~~E~~~~~~~~ 128 (242)
T d1muca1 71 QYW----DESQAIRA-CQVLGDNGIDLIE----Q------------PISRINRGGQVRLNQRT-PAPIMADESIESVEDA 128 (242)
T ss_dssp TCB----CHHHHHHH-HHHHHHTTCCCEE----C------------CBCTTCHHHHHHHHHHC-SSCEEESTTCSSHHHH
T ss_pred CCC----cHHHHHHH-HHHhhhhhHHHhh----c------------chhhhhhhhhhhhhhhh-hheeecccccccccch
Confidence 344 45555664 4556788888773 1 12334577777887775 8999999999999999
Q ss_pred HHHHHhC-CChhhhhHH
Q 020423 283 NAALRKG-AHHVMVGRA 298 (326)
Q Consensus 283 ~~~l~~G-aD~V~iGRa 298 (326)
.++++.| +|.+++--.
T Consensus 129 ~~~i~~~~~d~~~~d~~ 145 (242)
T d1muca1 129 FSLAADGAASIFALKIA 145 (242)
T ss_dssp HHHHHHTCCSEEEECHH
T ss_pred hhhhhcccccccccccc
Confidence 9999976 888887433
|
| >d1vhca_ c.1.10.1 (A:) Hypothetical protein HI0047 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Hypothetical protein HI0047 species: Haemophilus influenzae [TaxId: 727]
Probab=96.64 E-value=0.011 Score=49.20 Aligned_cols=145 Identities=15% Similarity=0.171 Sum_probs=83.8
Q ss_pred CcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC-CCcEEEEecc
Q 020423 125 HPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCRI 203 (326)
Q Consensus 125 ~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~-~~pv~vK~r~ 203 (326)
.+++.=|.+.+.++..+.++.+.+.|+..|||.+..|. ..+.++.+++.. +.-+.+. .
T Consensus 14 ~~iipvlr~~~~~~~~~~~~al~~~Gi~~iEitl~~~~-------------------a~~~I~~l~~~~p~~~vGaG--T 72 (212)
T d1vhca_ 14 LKIVPVIALDNADDILPLADTLAKNGLSVAEITFRSEA-------------------AADAIRLLRANRPDFLIAAG--T 72 (212)
T ss_dssp HCEEEEECCSSGGGHHHHHHHHHHTTCCEEEEETTSTT-------------------HHHHHHHHHHHCTTCEEEEE--S
T ss_pred CCEEEEEeCCCHHHHHHHHHHHHHCCCCEEEEeCCChh-------------------HHHHHHHHHhcCCCceEeee--e
Confidence 45776777888899999999999999999999765442 134455555443 2222221 0
Q ss_pred CCCCCccHHHHHHHHHHHhhhCCccEEEEecCCc------------ccCCC-Cc----------CCcCCCCC----ccHH
Q 020423 204 GVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKA------------LLNGI-SP----------AENRTIPP----LKYE 256 (326)
Q Consensus 204 g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~------------~~~g~-~~----------~~~~~~~~----~~~~ 256 (326)
..+.++.. ...++|++++.--+-+. +..|. ++ .+--...| ....
T Consensus 73 ----V~~~~~~~-----~a~~aGa~FivSP~~~~~v~~~a~~~~i~~iPGv~TpsEi~~A~~~G~~~vK~FPA~~~gG~~ 143 (212)
T d1vhca_ 73 ----VLTAEQVV-----LAKSSGADFVVTPGLNPKIVKLCQDLNFPITPGVNNPMAIEIALEMGISAVKFFPAEASGGVK 143 (212)
T ss_dssp ----CCSHHHHH-----HHHHHTCSEEECSSCCHHHHHHHHHTTCCEECEECSHHHHHHHHHTTCCEEEETTTTTTTHHH
T ss_pred ----cccHHHHH-----HHHhhCCcEEECCCCCHHHHHHHHhcCCCccCCcCCHHHHHHHHHCCCCEEEEccccccchHH
Confidence 01122111 11234555543211100 00000 00 00000011 1245
Q ss_pred HHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHH
Q 020423 257 YYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAY 300 (326)
Q Consensus 257 ~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall 300 (326)
+++.+..-+++++++.+||| +.+++.+.++.|+.++.+|+.+.
T Consensus 144 ~lkal~~p~p~~~~~ptGGV-~~~N~~~yl~~g~v~~~~Gs~l~ 186 (212)
T d1vhca_ 144 MIKALLGPYAQLQIMPTGGI-GLHNIRDYLAIPNIVACGGSWFV 186 (212)
T ss_dssp HHHHHHTTTTTCEEEEBSSC-CTTTHHHHHTSTTBCCEEECGGG
T ss_pred HHHHHhccccCCeEEecCCC-CHHHHHHHHhCCCEEEEEChhhC
Confidence 67777777789999999999 57899999999998898888654
|
| >d2a4aa1 c.1.10.1 (A:3-258) Fructose-1,6-bisphosphate aldolase {Plasmodium yoelii yoelii [TaxId: 73239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Fructose-1,6-bisphosphate aldolase species: Plasmodium yoelii yoelii [TaxId: 73239]
Probab=96.61 E-value=0.0042 Score=53.46 Aligned_cols=138 Identities=14% Similarity=0.120 Sum_probs=79.2
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHH---HHHHhcCCCcEEEEeccCCCCCccH
Q 020423 135 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAM---SVIAANTNVPVSVKCRIGVDDHDSY 211 (326)
Q Consensus 135 ~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv---~avr~~~~~pv~vK~r~g~~~~~~~ 211 (326)
..+.-...++.+.+.|+|.||+=.. ||.-..++.+.+.|.+ ..+++.++ +..+|+-+-... -+-
T Consensus 83 ~~~~K~~Ea~~Ai~~GAdEID~Vin-----------~~~l~~g~~~~v~e~~~~i~~~~~~~~-~~~lKVIlEt~~-L~~ 149 (256)
T d2a4aa1 83 SMEKVLNDTEKALDDGADEIDLVIN-----------YKKIIENTDEGLKEATKLTQSVKKLLT-NKILKVIIEVGE-LKT 149 (256)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEECC-----------HHHHHHSHHHHHHHHHHHHHHHHTTCT-TSEEEEECCHHH-HCS
T ss_pred hHHHHHHHHHHHHHcCCCeEEEecc-----------HHHHhcCcHHHHHHHHHHHHHHHhhcc-CCeeEeeehhhh-cCc
Confidence 4565666777788899999998531 3333334455555554 44444442 334665542100 011
Q ss_pred HHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhc--------CCCceEEEeCCCCCHHHHH
Q 020423 212 NQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRD--------FPDLTFTLNGGINTVDEVN 283 (326)
Q Consensus 212 ~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~--------~~~iPVIa~GgI~s~~da~ 283 (326)
++..........++|+|+|--+.+... .|. .+.+...+.+..++ ..++.|=++|||+|.+++.
T Consensus 150 ~e~i~~~~~~~~~aGadFVKTSTG~~~-~ga--------t~~~v~~m~~~v~e~~~~~~~~g~~~gVKASGGIrt~~~a~ 220 (256)
T d2a4aa1 150 EDLIIKTTLAVLNGNADFIKTSTGKVQ-INA--------TPSSVEYIIKAIKEYIKNNPEKNNKIGLKVSGGISDLNTAS 220 (256)
T ss_dssp HHHHHHHHHHHHTTTCSEEECCCSCSS-CCC--------CHHHHHHHHHHHHHHHHHCGGGTTCCEEEEESSCCSHHHHH
T ss_pred HHHHHHHHHHHHhcccHHHHhccCCCC-CCC--------CHHHHHHHHHHHHHHHhhccccCCceeEEecCCCCCHHHHH
Confidence 233222333445799999987655321 111 12233333333322 2478899999999999999
Q ss_pred HHHHhCCChhh
Q 020423 284 AALRKGAHHVM 294 (326)
Q Consensus 284 ~~l~~GaD~V~ 294 (326)
++++.|++.+.
T Consensus 221 ~~i~~g~~~lG 231 (256)
T d2a4aa1 221 HYILLARRFLS 231 (256)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHHhcc
Confidence 99998888653
|
| >d1tqxa_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: D-ribulose-5-phosphate 3-epimerase domain: D-ribulose-5-phosphate 3-epimerase species: Plasmodium falciparum [TaxId: 5833]
Probab=96.60 E-value=0.027 Score=47.06 Aligned_cols=147 Identities=10% Similarity=0.137 Sum_probs=95.2
Q ss_pred CCCcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEec
Q 020423 123 EQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCR 202 (326)
Q Consensus 123 ~~~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r 202 (326)
++.|+-+.|+..+|+.|.+ ...++|.+.+-+|..+ .......+.++.+++. +.-+.+-+.
T Consensus 60 ~~~~~dvHLMv~~P~~~i~---~~~~~~~~~i~~~~~~----------------~~~~~~~~~i~~i~~~-g~~~Gial~ 119 (221)
T d1tqxa_ 60 KSIFFDVHLMVEYPEKYVP---LLKTSNQLTFHFEALN----------------EDTERCIQLAKEIRDN-NLWCGISIK 119 (221)
T ss_dssp SSCEEEEEEESSCGGGGGG---GCTTSSEEEEEGGGGT----------------TCHHHHHHHHHHHHTT-TCEEEEEEC
T ss_pred CchhhhhhHHhhhhhhhhh---hhhhcCceeEEeehhc----------------cccchhhHHHHHHHhc-CCeEEEeec
Confidence 3567888898888887764 3345665555444211 1234455666666543 555555555
Q ss_pred cCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHH
Q 020423 203 IGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEV 282 (326)
Q Consensus 203 ~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da 282 (326)
+..+ ++. +...+...-+|++.+-+-.+ |.++. ..-+..++.+.++++..+++.|..-||| +.+.+
T Consensus 120 p~t~----~~~----~~~~l~~~~~d~vlim~V~p---G~~GQ---~f~~~~l~KI~~lr~~~~~~~I~VDGGI-n~~~i 184 (221)
T d1tqxa_ 120 PKTD----VQK----LVPILDTNLINTVLVMTVEP---GFGGQ---SFMHDMMGKVSFLRKKYKNLNIQVDGGL-NIETT 184 (221)
T ss_dssp TTSC----GGG----GHHHHTTTCCSEEEEESSCT---TCSSC---CCCGGGHHHHHHHHHHCTTCEEEEESSC-CHHHH
T ss_pred cccc----ccc----chhhcccccccEEEEEeecc---ccccc---ccCcchhHHHHHHHHhcCCcceEEEccc-CHHhH
Confidence 5422 111 12344445689998876554 22221 1123347778888877778999999999 66889
Q ss_pred HHHHHhCCChhhhhHHHHhCCc
Q 020423 283 NAALRKGAHHVMVGRAAYQNPW 304 (326)
Q Consensus 283 ~~~l~~GaD~V~iGRall~dP~ 304 (326)
..+.+.|||.+.+|++++.+++
T Consensus 185 ~~l~~aGad~iV~GS~if~~~d 206 (221)
T d1tqxa_ 185 EISASHGANIIVAGTSIFNAED 206 (221)
T ss_dssp HHHHHHTCCEEEESHHHHTCSS
T ss_pred HHHHHcCCCEEEEChHHHCCCC
Confidence 9999999999999999998777
|
| >d1viza_ c.1.4.1 (A:) PcrB protein homolog YerE {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: PcrB protein homolog YerE species: Bacillus subtilis [TaxId: 1423]
Probab=96.52 E-value=0.0014 Score=55.58 Aligned_cols=50 Identities=20% Similarity=0.197 Sum_probs=41.2
Q ss_pred HHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhCCch
Q 020423 255 YEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 305 (326)
Q Consensus 255 ~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~dP~l 305 (326)
.+.+..+++...++||+..+||.|++++.++. .+||+|.+|+++..+++-
T Consensus 169 ~~~~~~v~~~~~~~Pl~VGFGIst~e~a~~v~-~~ADgVVVGSAiv~~ie~ 218 (229)
T d1viza_ 169 IEAVKKTKAVLETSTLFYGGGIKDAETAKQYA-EHADVIVVGNAVYEDFDR 218 (229)
T ss_dssp HHHHHHHHHTCSSSEEEEESSCCSHHHHHHHH-TTCSEEEECTHHHHCHHH
T ss_pred chhHHHHHhhccCcceEEEcccCCHHHHHHHH-cCCCEEEECHHHHhhHHH
Confidence 34455555555679999999999999998876 689999999999988773
|
| >d1gqna_ c.1.10.1 (A:) Type I 3-dehydroquinate dehydratase {Salmonella typhi [TaxId: 90370]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Type I 3-dehydroquinate dehydratase species: Salmonella typhi [TaxId: 90370]
Probab=96.49 E-value=0.088 Score=44.66 Aligned_cols=97 Identities=10% Similarity=0.091 Sum_probs=69.5
Q ss_pred CcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC-CCcEEEEecc
Q 020423 125 HPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCRI 203 (326)
Q Consensus 125 ~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~-~~pv~vK~r~ 203 (326)
.++++.|.+.+.+++.+.++.+.+.|+|.||+-+..-. + ..+.+.+.++++.+|+.. +.|+.+=+|.
T Consensus 16 pkIcv~l~~~~~~~~~~~~~~~~~~~aD~vE~RlD~l~------~------~~~~~~l~~~~~~lr~~~~~~PiI~T~R~ 83 (252)
T d1gqna_ 16 PKIIVSLMGRDINSVKAEALAYREATFDILEWRVDHFM------D------IASTQSVLTAARVIRDAMPDIPLLFTFRS 83 (252)
T ss_dssp CEEEEEECCSSHHHHHHHHHHHTTSCCSEEEEEGGGCS------C------TTCHHHHHHHHHHHHHHCTTSCEEEECCB
T ss_pred CEEEEEeCCCCHHHHHHHHHHHhhcCCCEEEEEEcccc------c------cCCHHHHHHHHHHHHHhcCCCCEEEEEec
Confidence 45889999999999999999999999999999653221 1 035678899999999877 6899998887
Q ss_pred CCCCC---ccHHHHHHHHHHHhhhCC-ccEEEEec
Q 020423 204 GVDDH---DSYNQLCDFIYKVSSLSP-TRHFIIHS 234 (326)
Q Consensus 204 g~~~~---~~~~e~~~~ia~~le~~G-vd~I~v~~ 234 (326)
.++.. .+-++-.+.+...+ +.| +|+++|.-
T Consensus 84 ~~eGG~~~~~~~~~~~ll~~~~-~~~~~d~iDiEl 117 (252)
T d1gqna_ 84 AKEGGEQTITTQHYLTLNRAAI-DSGLVDMIDLEL 117 (252)
T ss_dssp GGGTCSBCCCHHHHHHHHHHHH-HHSCCSEEEEEG
T ss_pred hhhCCCCCCCHHHHHHHHHHHH-HcCCCceEeccc
Confidence 54321 12233344344444 356 89999863
|
| >d1to3a_ c.1.10.1 (A:) Putative aldolase YihT {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Putative aldolase YihT species: Salmonella typhimurium [TaxId: 90371]
Probab=96.39 E-value=0.012 Score=51.27 Aligned_cols=137 Identities=12% Similarity=0.031 Sum_probs=75.5
Q ss_pred HHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEecc---CCCCCccHHHHHHHHH
Q 020423 143 TELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRI---GVDDHDSYNQLCDFIY 219 (326)
Q Consensus 143 A~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~---g~~~~~~~~e~~~~ia 219 (326)
.+.+.+.|.|+|-+.+-.. .|. . -+.+.+++.++.++. +..+.|+.+-+=. ...+..+..+.+...+
T Consensus 112 v~~a~~~GadaVk~lv~~~------~d~-~--~e~~~~~~~~l~~~c-~~~glp~llE~l~~~~~~~~~~~~~~~i~~a~ 181 (291)
T d1to3a_ 112 AQAVKRDGAKALKLLVLWR------SDE-D--AQQRLNMVKEFNELC-HSNGLLSIIEPVVRPPRCGDKFDREQAIIDAA 181 (291)
T ss_dssp HHHHHHTTCCEEEEEEEEC------TTS-C--HHHHHHHHHHHHHHH-HTTTCEEEEEEEECCCSSCSCCCHHHHHHHHH
T ss_pred HHHHHhccCceEEEEEeeC------Ccc-c--HHHHHHHHHHHHHHH-HHcCCcceEEEEecCCCcccccchHHHHHHHH
Confidence 3457788999998865211 111 0 011223344444443 3458998876432 2222233334333345
Q ss_pred HHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHH---HHHHHHhcCCCce-EEEeCCCCCHHHHHH----HHHhCCC
Q 020423 220 KVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYE---YYYALLRDFPDLT-FTLNGGINTVDEVNA----ALRKGAH 291 (326)
Q Consensus 220 ~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~---~i~~i~~~~~~iP-VIa~GgI~s~~da~~----~l~~GaD 291 (326)
+.+.+.|+|.+-+.-. +.. ....++ .+.++... ..+| |+.+||. +.++..+ +++.||.
T Consensus 182 r~~~e~GaDi~K~~~p-----~~~-------~~~~~~~~~~~~~~~~~-~~~p~vvLs~G~-~~~~f~~~l~~A~~aGa~ 247 (291)
T d1to3a_ 182 KELGDSGADLYKVEMP-----LYG-------KGARSDLLTASQRLNGH-INMPWVILSSGV-DEKLFPRAVRVAMEAGAS 247 (291)
T ss_dssp HHHTTSSCSEEEECCG-----GGG-------CSCHHHHHHHHHHHHHT-CCSCEEECCTTS-CTTTHHHHHHHHHHTTCC
T ss_pred HHHHhcCCcEEEEecC-----CCc-------hhhhHHHHHHHHHHhhc-CCCcEEEEeCCC-CHHHHHHHHHHHHHCCCe
Confidence 6666799999876421 100 001232 23344444 3788 6777786 4455544 4448999
Q ss_pred hhhhhHHHHhCC
Q 020423 292 HVMVGRAAYQNP 303 (326)
Q Consensus 292 ~V~iGRall~dP 303 (326)
++.+||.+..+|
T Consensus 248 G~~~GR~iw~~~ 259 (291)
T d1to3a_ 248 GFLAGRAVWSSV 259 (291)
T ss_dssp EEEESHHHHGGG
T ss_pred EEEeChhhhhCc
Confidence 999999999886
|
| >d2f6ua1 c.1.4.1 (A:1001-1231) (S)-3-O-geranylgeranylglyceryl phosphate synthase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: (S)-3-O-geranylgeranylglyceryl phosphate synthase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=96.22 E-value=0.0017 Score=55.14 Aligned_cols=47 Identities=21% Similarity=0.374 Sum_probs=38.9
Q ss_pred HHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhC
Q 020423 255 YEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN 302 (326)
Q Consensus 255 ~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~d 302 (326)
.+.+.+.++...++||+..+||+|++++.++.+ +||+|.+|+++..+
T Consensus 175 ~~~~~~~~k~~~~~Pv~VGFGI~s~e~a~~~~~-~ADgvIVGSaive~ 221 (231)
T d2f6ua1 175 PELVAEVKKVLDKARLFYGGGIDSREKAREMLR-YADTIIVGNVIYEK 221 (231)
T ss_dssp HHHHHHHHHHCSSSEEEEESCCCSHHHHHHHHH-HSSEEEECHHHHHH
T ss_pred hhHHHHHHHhcCCCCEEEEeCcCCHHHHHHHHh-cCCEEEEChHHhcc
Confidence 455556666666899999999999999998876 79999999998654
|
| >d1vcva1 c.1.10.1 (A:1-226) Deoxyribose-phosphate aldolase DeoC {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Deoxyribose-phosphate aldolase DeoC species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=96.14 E-value=0.016 Score=48.70 Aligned_cols=129 Identities=13% Similarity=0.050 Sum_probs=73.7
Q ss_pred HHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHHHHhhhC
Q 020423 146 ANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLS 225 (326)
Q Consensus 146 a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~ 225 (326)
+...|+|.||+=.. ||.-...+.+.+.+-+.++++.++ +..+|+-+-...- +-++... +.++..++
T Consensus 75 a~~~GAdEID~Vin-----------~~~~~~g~~~~v~~ei~~v~~~~~-~~~lKVIlEt~~L-~~~ei~~-~~~~~~~a 140 (226)
T d1vcva1 75 RLAEVADEIDVVAP-----------IGLVKSRRWAEVRRDLISVVGAAG-GRVVKVITEEPYL-RDEERYT-LYDIIAEA 140 (226)
T ss_dssp HHTTTCSEEEEECC-----------HHHHHTTCHHHHHHHHHHHHHHTT-TSEEEEECCGGGC-CHHHHHH-HHHHHHHH
T ss_pred HHHcCCCeeEEEec-----------HHHHhCCCHHHHHHHHHHHHhccC-CCeEEEEeccccc-CHHHHHH-HHHHHHHc
Confidence 33459999998531 344444567777777778887773 3456765532111 2234433 34555678
Q ss_pred CccEEEEecCCcccCCC-CcCCcCCCCCccHHHHHHHHhcC-CCceEEEeCCCCCHHHHHHHHHh
Q 020423 226 PTRHFIIHSRKALLNGI-SPAENRTIPPLKYEYYYALLRDF-PDLTFTLNGGINTVDEVNAALRK 288 (326)
Q Consensus 226 Gvd~I~v~~~~~~~~g~-~~~~~~~~~~~~~~~i~~i~~~~-~~iPVIa~GgI~s~~da~~~l~~ 288 (326)
|+|+|--+.+....+.. .........+.+...+.+..+.. .++-|=++|||+|.+++.++++.
T Consensus 141 GadFIKTSTGf~~~g~~~~~~~~~~at~~~~~~~~~~~~~~g~~vgiKasGGIrt~~~A~~~i~a 205 (226)
T d1vcva1 141 GAHFIKSSTGFAEEAYAARQGNPVHSTPERAAAIARYIKEKGYRLGVKMAGGIRTREQAKAIVDA 205 (226)
T ss_dssp TCSEEECCCSCCCHHHHHHTTCCSSCCHHHHHHHHHHHHHHTCCCEEEEESSCCSHHHHHHHHHH
T ss_pred CcceeeecccccCCcccccccCcccCcHHHHHHHHHHHHHhCCceeEECcCCCCCHHHHHHHHHh
Confidence 99999877654210000 00000001112233455555432 36788899999999999999974
|
| >d1muma_ c.1.12.7 (A:) 2-methylisocitrate lyase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Phosphoenolpyruvate mutase/Isocitrate lyase-like domain: 2-methylisocitrate lyase species: Escherichia coli [TaxId: 562]
Probab=96.13 E-value=0.035 Score=48.34 Aligned_cols=157 Identities=8% Similarity=0.056 Sum_probs=91.4
Q ss_pred CCCCcEEEEe---cCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCC-HHHHHHHHHHHHhcCCCcE
Q 020423 122 PEQHPIVLQI---GGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLD-PKFVGEAMSVIAANTNVPV 197 (326)
Q Consensus 122 ~~~~piivQL---~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r-~~~l~eiv~avr~~~~~pv 197 (326)
..+.|+++-. +|..+....+..+++.++|+.||.|-=. . ...|.+.+++...-. .+++.++-.++....+..+
T Consensus 75 a~~~Pvi~D~d~GyG~~~~~v~~~v~~~~~aGvagi~iEDq-~--~pk~~g~~~~~~~~~~~e~~~ki~aa~~a~~~~d~ 151 (289)
T d1muma_ 75 VCSLPLLVDADIGFGSSAFNVARTVKSMIKAGAAGLHIEDQ-V--GAKRCGHRPNKAIVSKEEMVDRIRAAVDAKTDPDF 151 (289)
T ss_dssp HCCSCEEEECTTCSSSSHHHHHHHHHHHHHHTCSEEEEECB-C--CCSSTTCCSCCCBCCHHHHHHHHHHHHHTCSSTTS
T ss_pred ccCCCeeecccccccccchHHHHHHHHHHHCCCCEEEecCc-c--cccccccccccceecHHHHHHHHHHHHHhcCCcch
Confidence 3567898887 3556889999999999999999998532 1 113345555543333 3444444443332223334
Q ss_pred EEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEE---eC
Q 020423 198 SVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTL---NG 274 (326)
Q Consensus 198 ~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa---~G 274 (326)
.+=-|........++|.++.. +.+.++|+|.+-+++.. ..+.++++.+.. ++|+.. .|
T Consensus 152 ~IiARTDa~~~~g~~eAi~R~-~aY~eAGAD~vf~~~~~-----------------~~~~~~~~~~~~-~~Pl~~~~~~~ 212 (289)
T d1muma_ 152 VIMARTDALAVEGLDAAIERA-QAYVEAGAEMLFPEAIT-----------------ELAMYRQFADAV-QVPILANITEF 212 (289)
T ss_dssp EEEEEECCHHHHCHHHHHHHH-HHHHHTTCSEEEETTCC-----------------CHHHHHHHHHHH-CSCBEEECCSS
T ss_pred hheeccccccccCHHHHHHHH-HHhhhcCCcEEEecCCC-----------------CHHHHHHHHHhc-CCCEEEeecCc
Confidence 333344222122355655543 34567999999887532 145556666554 566543 24
Q ss_pred CCCCHHHHHHHHHhCCChhhhhHHHH
Q 020423 275 GINTVDEVNAALRKGAHHVMVGRAAY 300 (326)
Q Consensus 275 gI~s~~da~~~l~~GaD~V~iGRall 300 (326)
+-...-++.++.+.|...|..+-.++
T Consensus 213 ~~~p~~s~~eL~~~Gv~~v~~~~~~~ 238 (289)
T d1muma_ 213 GATPLFTTDELRSAHVAMALYPLSAF 238 (289)
T ss_dssp SSSCCCCHHHHHHTTCSEEEESSHHH
T ss_pred CCCccchHHHHHHhccceEEechHHH
Confidence 43322245567778888888875554
|
| >d1wufa1 c.1.11.2 (A:1127-1370) N-acylamino acid racemase {Listeria innocua [TaxId: 1642]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: N-acylamino acid racemase species: Listeria innocua [TaxId: 1642]
Probab=96.10 E-value=0.023 Score=47.90 Aligned_cols=128 Identities=12% Similarity=0.163 Sum_probs=85.8
Q ss_pred cEEEEec-CCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCC-CcEEEEecc
Q 020423 126 PIVLQIG-GSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTN-VPVSVKCRI 203 (326)
Q Consensus 126 piivQL~-g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~-~pv~vK~r~ 203 (326)
|+...+. ..+++++.+.++.+.+.||+.+-+..|. + .+ .+.++++|+.++ ..+.+-...
T Consensus 6 ~~~~s~g~~~~~e~~~~~~~~~~~~Gf~~~Kikvg~--------~-------~D----~~~v~~ir~~~~~~~l~vDaN~ 66 (244)
T d1wufa1 6 KVGVSIGLQQNVETLLQLVNQYVDQGYERVKLKIAP--------N-------KD----IQFVEAVRKSFPKLSLMADANS 66 (244)
T ss_dssp EBCEEECCCSCHHHHHHHHHHHHHHTCCEEEEECBT--------T-------BS----HHHHHHHHTTCTTSEEEEECTT
T ss_pred EEeEEeCCCCCHHHHHHHHHHHHHCCCCEEEEEeCC--------c-------HH----HHHHHHHHHhccchhhhhhhhc
Confidence 3444443 3579999999999999999999997641 0 12 356778888764 333333333
Q ss_pred CCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHH
Q 020423 204 GVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVN 283 (326)
Q Consensus 204 g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~ 283 (326)
+|+ .++.. ++ +.+++.++.++. . .+++.+++.++++++.. ++||.+.-.+.++.++.
T Consensus 67 ~~~----~~~a~-~~-~~l~~~~~~wiE----e------------P~~~~d~~~~~~l~~~~-~~pia~dE~~~~~~~~~ 123 (244)
T d1wufa1 67 AYN----REDFL-LL-KELDQYDLEMIE----Q------------PFGTKDFVDHAWLQKQL-KTRICLDENIRSVKDVE 123 (244)
T ss_dssp CCC----GGGHH-HH-HTTGGGTCSEEE----C------------CSCSSCSHHHHHHHTTC-SSEEEECTTCCSHHHHH
T ss_pred ccc----chhhh-hh-hcccccchhhhc----C------------cccccchhhhhcccccc-ccccccCccccchhhhh
Confidence 343 22333 34 456778887773 1 12233466677776654 89999999999999999
Q ss_pred HHHHhC-CChhhh
Q 020423 284 AALRKG-AHHVMV 295 (326)
Q Consensus 284 ~~l~~G-aD~V~i 295 (326)
++++.| +|.+++
T Consensus 124 ~~i~~~a~d~v~~ 136 (244)
T d1wufa1 124 QAHSIGSCRAINL 136 (244)
T ss_dssp HHHHHTCCSEEEE
T ss_pred hhccccccceeec
Confidence 999977 788875
|
| >d1s2wa_ c.1.12.7 (A:) Phosphoenolpyruvate mutase {Blue mussel (Mytilus edulis) [TaxId: 6550]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Phosphoenolpyruvate mutase/Isocitrate lyase-like domain: Phosphoenolpyruvate mutase species: Blue mussel (Mytilus edulis) [TaxId: 6550]
Probab=95.94 E-value=0.21 Score=42.71 Aligned_cols=209 Identities=10% Similarity=0.029 Sum_probs=108.6
Q ss_pred CcEEEccCCCCChHHHHHHHHHcCCCcEEEeccee-eccccccccc---hhhhhh-----cCCCCCcEEEEec-C-CCHH
Q 020423 69 PWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLA-AETIIYQQGN---LDRFLA-----FSPEQHPIVLQIG-G-SNLD 137 (326)
Q Consensus 69 nrivlAPM~~~s~~~~r~~~~~~Gg~gli~te~~~-~~~~~~~~~~---~~~~~~-----~~~~~~piivQL~-g-~~~~ 137 (326)
+.+++.| ++-|..-...+.+.| +..++|.... ...+.+.+.. ...+++ ....+-|+++-+- | .++.
T Consensus 15 ~~~~~~p--~~~Da~SAr~~e~aG-f~a~~~ss~~~aas~G~pD~~~lt~~e~~~~~~~I~~~~~lPv~~D~d~GyG~~~ 91 (275)
T d1s2wa_ 15 KDLEFIM--EAHNGLSARIVQEAG-FKGIWGSGLSVSAQLGVRDSNEASWTQVVEVLEFMSDASDVPILLDADTGYGNFN 91 (275)
T ss_dssp SSCEEEE--EECSHHHHHHHHHHT-CSCEEECCHHHHHTC---------CHHHHHHHHHHHHTCSSCEEEECCSSCSSHH
T ss_pred CCCEEee--cCcCHHHHHHHHHcC-CCEEEhhHHHHHHHcCCCCCCccchhhHHHHHHhhhcccCCceeEecccccccch
Confidence 4455655 555555555555556 5455554322 2222222211 112211 2346788998873 2 2688
Q ss_pred HHHHHHHHHHHCCCCEEEecCC-CCCCcccCCCCcccc---ccCCHHHHHHHHHHHHhcCCCcEEEEeccCCC-CCccHH
Q 020423 138 NLAKATELANAYNYDEINLNCG-CPSPKVAGHGCFGVS---LMLDPKFVGEAMSVIAANTNVPVSVKCRIGVD-DHDSYN 212 (326)
Q Consensus 138 ~f~~aA~~a~~aG~d~Iein~g-~P~~~~~r~d~yGgs---l~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~-~~~~~~ 212 (326)
+..+.+++..++|+.||.|.=. .|. +.+.+.+. +....+....+..++....+.++.+=-|.... ....++
T Consensus 92 ~v~~tv~~~~~aGaagi~iEDq~~pk----~~~~~~~~~~~~~~~~~~~~ki~aa~~~~~~~~~~i~ARtDa~~~~~gl~ 167 (275)
T d1s2wa_ 92 NARRLVRKLEDRGVAGACLEDKLFPK----TNSLHDGRAQPLADIEEFALKIKACKDSQTDPDFCIVARVEAFIAGWGLD 167 (275)
T ss_dssp HHHHHHHHHHHTTCCEEEEECBCC------------CTTCCBCCHHHHHHHHHHHHHHCSSTTCEEEEEECTTTTTCCHH
T ss_pred HHHHHHHHHHHhccceeEeecccccc----ccccccccccccccHHHHHHHHHhhhhhccCcceeEEecchhhhhcCCHH
Confidence 9999999999999999999632 221 11222221 23333444445444444444454443344321 123467
Q ss_pred HHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHH-hcCCCceEEEeCCCCCHHHHHHHHHhCCC
Q 020423 213 QLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALL-RDFPDLTFTLNGGINTVDEVNAALRKGAH 291 (326)
Q Consensus 213 e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~-~~~~~iPVIa~GgI~s~~da~~~l~~GaD 291 (326)
|.++... .+.++|+|.+-+++.... .+....+. .....+|+..+.+-...-.+.++.+.|+.
T Consensus 168 eai~R~~-aY~eAGAD~vf~~~~~~~----------------~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~eL~~lGv~ 230 (275)
T d1s2wa_ 168 EALKRAE-AYRNAGADAILMHSKKAD----------------PSDIEAFMKAWNNQGPVVIVPTKYYKTPTDHFRDMGVS 230 (275)
T ss_dssp HHHHHHH-HHHHTTCSEEEECCCSSS----------------SHHHHHHHHHHTTCSCEEECCSTTTTSCHHHHHHHTCC
T ss_pred HHHHHHH-HHHhcCCCeeeeccccCc----------------HHHHHHHHHhhcCCCCEEEecccccccHHHHHHHcCCC
Confidence 7766544 456799999999875320 11111121 12246888887432211124567778999
Q ss_pred hhhhhHHHHh
Q 020423 292 HVMVGRAAYQ 301 (326)
Q Consensus 292 ~V~iGRall~ 301 (326)
.|..|-.++.
T Consensus 231 ~v~~g~~~~~ 240 (275)
T d1s2wa_ 231 MVIWANHNLR 240 (275)
T ss_dssp EEEECSHHHH
T ss_pred EEEEchHHHH
Confidence 9988776653
|
| >d1q6oa_ c.1.2.3 (A:) 3-keto-L-gulonate 6-phosphate decarboxylase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Decarboxylase domain: 3-keto-L-gulonate 6-phosphate decarboxylase species: Escherichia coli [TaxId: 562]
Probab=95.82 E-value=0.015 Score=47.28 Aligned_cols=143 Identities=12% Similarity=0.085 Sum_probs=80.3
Q ss_pred CCcEEEEec-CCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEec
Q 020423 124 QHPIVLQIG-GSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCR 202 (326)
Q Consensus 124 ~~piivQL~-g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r 202 (326)
+.++..-+. +..+..+.+ .+.++|+|.+.+|..+ | .+-+.+.++..++. +..+.+-+.
T Consensus 54 ~~~i~~d~k~~d~~~~~~~---~~~~~gad~vtvh~~~-----------g------~~~~~~~~~~~~~~-~~~~~v~~~ 112 (213)
T d1q6oa_ 54 HKIVLADAKIADAGKILSR---MCFEANADWVTVICCA-----------D------INTAKGALDVAKEF-NGDVQIELT 112 (213)
T ss_dssp TSEEEEEEEECSCHHHHHH---HHHHTTCSEEEEETTS-----------C------HHHHHHHHHHHHHT-TCEEEEEEC
T ss_pred cccceeEEeeccchHHHHH---HHHHcCCCEEEEeccC-----------C------chHHHHHHHHHHHc-CCceecccC
Confidence 445554433 344554443 3467899999998421 1 34455666665543 444433322
Q ss_pred cCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHH
Q 020423 203 IGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEV 282 (326)
Q Consensus 203 ~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da 282 (326)
.. .+.+.. . .+.+.+++.+.++.... .|..+. ...+...+.+.+... .++++...||+ +++++
T Consensus 113 ~~----~~~~~~----~-~~~~~~~~~~~~~~~~~--~g~~~~---~~~~~~l~~i~~~~~--~~~~i~~~gGi-~~~~~ 175 (213)
T d1q6oa_ 113 GY----WTWEQA----Q-QWRDAGIGQVVYHRSRD--AQAAGV---AWGEADITAIKRLSD--MGFKVTVTGGL-ALEDL 175 (213)
T ss_dssp SC----CCHHHH----H-HHHHTTCCEEEEECCHH--HHHTTC---CCCHHHHHHHHHHHH--TTCEEEEESSC-CGGGG
T ss_pred CC----CCHHHH----H-HHHHhHHHHHHHHHhcc--cCcCCe---eCCHHHHHHHHHhhc--cCceEecCCCc-CcCCH
Confidence 21 122221 1 22357888887764321 111110 111112344444433 37888888888 58899
Q ss_pred HHHHHhCCChhhhhHHHHhCCc
Q 020423 283 NAALRKGAHHVMVGRAAYQNPW 304 (326)
Q Consensus 283 ~~~l~~GaD~V~iGRall~dP~ 304 (326)
.++++.|||.+.+||+++...+
T Consensus 176 ~~~~~~Gad~iVVGr~I~~a~d 197 (213)
T d1q6oa_ 176 PLFKGIPIHVFIAGRSIRDAAS 197 (213)
T ss_dssp GGGTTSCCSEEEESHHHHTSSC
T ss_pred HHHHHcCCCEEEEChhhcCCCC
Confidence 9999999999999999998555
|
| >d1sjda1 c.1.11.2 (A:126-367) N-acylamino acid racemase {Amycolatopsis sp. [TaxId: 37632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: N-acylamino acid racemase species: Amycolatopsis sp. [TaxId: 37632]
Probab=95.78 E-value=0.084 Score=44.09 Aligned_cols=129 Identities=14% Similarity=0.116 Sum_probs=86.8
Q ss_pred cEEEEec-CCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCC--CcEEEEec
Q 020423 126 PIVLQIG-GSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTN--VPVSVKCR 202 (326)
Q Consensus 126 piivQL~-g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~--~pv~vK~r 202 (326)
|+-..+. +.+++++.+.++...+.||..+-|+.+ |. .+. +.++++|+.++ ..+.+-..
T Consensus 6 pvy~s~g~~~~~~~~~~~~~~~~~~Gf~~~Kikvg-~~--------------~Di----~~i~~ir~~~g~~~~l~vDaN 66 (242)
T d1sjda1 6 PCGVSVGIMDTIPQLLDVVGGYLDEGYVRIKLKIE-PG--------------WDV----EPVRAVRERFGDDVLLQVDAN 66 (242)
T ss_dssp EBEEEECCCSCHHHHHHHHHHHHHHTCSEEEEECB-TT--------------BSH----HHHHHHHHHHCTTSEEEEECT
T ss_pred EeeEEeCCCCCHHHHHHHHHHHHHcCCCEEEEECC-ch--------------hHH----HHHHHHHHHhCCCeeEeeccc
Confidence 4555554 358999999999999999999999763 11 223 45667777664 34444433
Q ss_pred cCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHH
Q 020423 203 IGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEV 282 (326)
Q Consensus 203 ~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da 282 (326)
.+|+. .+..+ +++ +++.++.+|. . .+++.++..++++.+.. ++||.+.-.+.+..+.
T Consensus 67 ~~~~~----~~a~~-~~~-l~~~~~~~iE----e------------P~~~~d~~~~~~l~~~~-~~pia~gE~~~~~~~~ 123 (242)
T d1sjda1 67 TAYTL----GDAPQ-LAR-LDPFGLLLIE----Q------------PLEEEDVLGHAELARRI-QTPICLDESIVSARAA 123 (242)
T ss_dssp TCCCG----GGHHH-HHT-TGGGCCSEEE----C------------CSCTTCHHHHHHHHTTC-SSCEEESTTCCSHHHH
T ss_pred cccch----hhhhH-Hhh-hhhhhhHHHH----h------------hhhhhhHHHHHHHHhcc-Ccccccccccccchhh
Confidence 34432 23344 445 5778888774 1 12333467777777664 8999888889999999
Q ss_pred HHHHHhC-CChhhhh
Q 020423 283 NAALRKG-AHHVMVG 296 (326)
Q Consensus 283 ~~~l~~G-aD~V~iG 296 (326)
.++++.+ +|.+++-
T Consensus 124 ~~~~~~~~~d~~~~d 138 (242)
T d1sjda1 124 ADAIKLGAVQIVNIK 138 (242)
T ss_dssp HHHHHTTCCSEEEEC
T ss_pred hhhhhcCccCEEEec
Confidence 9999976 8888763
|
| >d2gdqa1 c.1.11.2 (A:119-374) Hypothetical protein YitF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Hypothetical protein YitF species: Bacillus subtilis [TaxId: 1423]
Probab=95.74 E-value=0.12 Score=43.62 Aligned_cols=122 Identities=7% Similarity=0.050 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCC--CcEEEEeccCCCCCccHHH
Q 020423 136 LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTN--VPVSVKCRIGVDDHDSYNQ 213 (326)
Q Consensus 136 ~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~--~pv~vK~r~g~~~~~~~~e 213 (326)
.+++.+.++...+.||+.+-+..|- .+++.-.+.++++|+.+| .++.+-...+| +.++
T Consensus 22 ~~~~~~~~~~~~~~Gf~~~Kikvg~----------------~~~~~di~~v~avr~~~G~~~~l~vDan~~~----~~~~ 81 (256)
T d2gdqa1 22 ISRSVSNVEAQLKKGFEQIKVKIGG----------------TSFKEDVRHINALQHTAGSSITMILDANQSY----DAAA 81 (256)
T ss_dssp HHHHHHHHHHHHTTTCCEEEEECSS----------------SCHHHHHHHHHHHHHHHCTTSEEEEECTTCC----CHHH
T ss_pred HHHHHHHHHHHHHCCCCEEEEECCC----------------CCHHHHHHHHHHHHHHcCCCeEEeeccccCC----CHHH
Confidence 4566667777778899999997541 124444677788888774 44555444444 3445
Q ss_pred HHHHHHHHhhh-CCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhC-CC
Q 020423 214 LCDFIYKVSSL-SPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKG-AH 291 (326)
Q Consensus 214 ~~~~ia~~le~-~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~G-aD 291 (326)
.+++ .+.+++ .++.++. . .+++.++..++++++.. ++||.+.=.+.+.++..++++.| +|
T Consensus 82 A~~~-~~~l~~~~~i~~~E----e------------P~~~~d~~~~~~l~~~~-~ipIa~gE~~~~~~~~~~~i~~~a~d 143 (256)
T d2gdqa1 82 AFKW-ERYFSEWTNIGWLE----E------------PLPFDQPQDYAMLRSRL-SVPVAGGENMKGPAQYVPLLSQRCLD 143 (256)
T ss_dssp HHTT-HHHHTTCSCEEEEE----C------------CSCSSCHHHHHHHHTTC-SSCEEECTTCCSHHHHHHHHHTTCCS
T ss_pred HHHH-HHHHhhcCceeEec----c------------ccccchHHHHHHHhhcc-cceeecCccccchhhHHHHHHhhcce
Confidence 5553 344555 4666663 0 12233567777776654 89988777899999999999865 77
Q ss_pred hhhh
Q 020423 292 HVMV 295 (326)
Q Consensus 292 ~V~i 295 (326)
.+++
T Consensus 144 i~~~ 147 (256)
T d2gdqa1 144 IIQP 147 (256)
T ss_dssp EECC
T ss_pred eeec
Confidence 7765
|
| >d1mxsa_ c.1.10.1 (A:) KDPG aldolase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: KDPG aldolase species: Pseudomonas putida [TaxId: 303]
Probab=95.72 E-value=0.023 Score=47.36 Aligned_cols=149 Identities=13% Similarity=0.101 Sum_probs=83.4
Q ss_pred CcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC-CCcEEEEecc
Q 020423 125 HPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCRI 203 (326)
Q Consensus 125 ~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~-~~pv~vK~r~ 203 (326)
.|++.=|...++++..+.++.+.+.|+..+|+.+..|. ..+.++.+++.. +.-+.+. .
T Consensus 17 ~~iipvl~~~~~~~a~~~~~al~~~Gi~~iEitl~~p~-------------------a~~~i~~l~~~~p~~~vGaG--T 75 (216)
T d1mxsa_ 17 ARILPVITIAREEDILPLADALAAGGIRTLEVTLRSQH-------------------GLKAIQVLREQRPELCVGAG--T 75 (216)
T ss_dssp HSEEEEECCSCGGGHHHHHHHHHHTTCCEEEEESSSTH-------------------HHHHHHHHHHHCTTSEEEEE--C
T ss_pred CCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEeCCChh-------------------HHHHHHHHHHhCCCcceeee--e
Confidence 46777778889999999999999999999999764332 234555555543 2222222 1
Q ss_pred CCCCCccHHHHHHHHHHHhhhCCccEEEEecCCc------------ccCC-CCc----------CCcCCCCCc----cHH
Q 020423 204 GVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKA------------LLNG-ISP----------AENRTIPPL----KYE 256 (326)
Q Consensus 204 g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~------------~~~g-~~~----------~~~~~~~~~----~~~ 256 (326)
. .+.+++. ...++|++++.--+... +..| .++ .+.-.+.|. ...
T Consensus 76 -V---~~~~~~~-----~a~~aGa~FivsP~~~~~v~~~a~~~~i~~iPGv~TpsEi~~A~~~G~~~vKlFPA~~~~g~~ 146 (216)
T d1mxsa_ 76 -V---LDRSMFA-----AVEAAGAQFVVTPGITEDILEAGVDSEIPLLPGISTPSEIMMGYALGYRRFKLFPAEISGGVA 146 (216)
T ss_dssp -C---CSHHHHH-----HHHHHTCSSEECSSCCHHHHHHHHHCSSCEECEECSHHHHHHHHTTTCCEEEETTHHHHTHHH
T ss_pred -e---ecHHHHH-----HHHhCCCCEEECCCCcHHHHHHHHhcCCCccCCcCCHHHHHHHHHCCCCEEEeccccccccHH
Confidence 1 1111111 11234555543211100 0000 000 000011121 135
Q ss_pred HHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhH-----HHHhCCc
Q 020423 257 YYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGR-----AAYQNPW 304 (326)
Q Consensus 257 ~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGR-----all~dP~ 304 (326)
+++.+..-+++++++.+||| +.+++.+.++.|+-.+..|+ .++.+.+
T Consensus 147 ~ikal~~p~p~~~fiptGGV-~~~n~~~yl~~~~v~avggs~l~~~~~i~~~d 198 (216)
T d1mxsa_ 147 AIKAFGGPFGDIRFCPTGGV-NPANVRNYMALPNVMCVGTTWMLDSSWIKNGD 198 (216)
T ss_dssp HHHHHHTTTTTCEEEEBSSC-CTTTHHHHHHSTTBCCEEECTTSCHHHHHTTC
T ss_pred HHHHHhcccccCceeccCCC-CHHHHHHHHhcCCeEEEEccccCCHHHhhcCC
Confidence 67777766789999999999 46899999997655555444 4555555
|
| >d2czda1 c.1.2.3 (A:1-206) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Decarboxylase domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) species: Pyrococcus horikoshii [TaxId: 53953]
Probab=95.50 E-value=0.03 Score=46.00 Aligned_cols=139 Identities=15% Similarity=0.161 Sum_probs=73.6
Q ss_pred CCcEEEEecCCC-HHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEec
Q 020423 124 QHPIVLQIGGSN-LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCR 202 (326)
Q Consensus 124 ~~piivQL~g~~-~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r 202 (326)
+.++++-+--.+ +.....+++.+.++|+|.+.+|..+ | .+.++++++..+. .+-..
T Consensus 51 ~~~if~DlK~~Di~~t~~~~~~~~~~~gad~~Tvh~~~-----------g----------~~~i~~~~~~~~~--~~~~~ 107 (206)
T d2czda1 51 GVEIIADLKLADIPNTNRLIARKVFGAGADYVIVHTFV-----------G----------RDSVMAVKELGEI--IMVVE 107 (206)
T ss_dssp CCEEEEEEEECSCHHHHHHHHHHHHHTTCSEEEEESTT-----------C----------HHHHHHHHTTSEE--EEECC
T ss_pred CCeEEEEeeeeeecccchheehhhccccccEEEeeecc-----------c----------HHHHHHhhhcccc--eEEEe
Confidence 567787764344 5555567777888999999999521 1 1344555443221 11111
Q ss_pred cCCCC-CccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCC-CceEEEeCCCCC-H
Q 020423 203 IGVDD-HDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFP-DLTFTLNGGINT-V 279 (326)
Q Consensus 203 ~g~~~-~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~-~iPVIa~GgI~s-~ 279 (326)
..... .+...+..+.+.++..+.+.+.+..++.. .+.+..+++... ++.+ .++||.. .
T Consensus 108 ~s~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~~~~------------------~~~~~~~r~~~~~~~~i-~~pGI~~~~ 168 (206)
T d2czda1 108 MSHPGALEFINPLTDRFIEVANEIEPFGVIAPGTR------------------PERIGYIRDRLKEGIKI-LAPGIGAQG 168 (206)
T ss_dssp CCSGGGGTTTGGGHHHHHHHHHHHCCSEEECCCSS------------------THHHHHHHHHSCTTCEE-EECCCCSST
T ss_pred ccCCcccccccHHHHHHHHHHHhcccccccccccC------------------chhhhhhhhhhcccceE-ECCCccccC
Confidence 11100 00001112222333344565555433211 123344444443 3444 4455542 3
Q ss_pred HHHHHHHHhCCChhhhhHHHHhCCc
Q 020423 280 DEVNAALRKGAHHVMVGRAAYQNPW 304 (326)
Q Consensus 280 ~da~~~l~~GaD~V~iGRall~dP~ 304 (326)
.+..++++.|+|.+.+||++...++
T Consensus 169 ~~~~~ai~~Gad~iVvGR~I~~a~d 193 (206)
T d2czda1 169 GKAKDAVKAGADYIIVGRAIYNAPN 193 (206)
T ss_dssp THHHHHHHHTCSEEEECHHHHTSSS
T ss_pred CCHHHHHHhCCCEEEEChhhccCCC
Confidence 4677888999999999999998655
|
| >d1wbha1 c.1.10.1 (A:1-213) KDPG aldolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: KDPG aldolase species: Escherichia coli [TaxId: 562]
Probab=95.38 E-value=0.03 Score=46.53 Aligned_cols=78 Identities=13% Similarity=0.147 Sum_probs=58.5
Q ss_pred CcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeC
Q 020423 195 VPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNG 274 (326)
Q Consensus 195 ~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~G 274 (326)
.|+..=+|.. +.++..+ +++.+.+.|+..|.+.-++. ...+.+.+++++++++ ++++|
T Consensus 15 ~~iipvlr~~--~~~~a~~----~~~al~~~Gi~~iEitl~tp---------------~a~~~I~~l~~~~p~~-~vGaG 72 (213)
T d1wbha1 15 GPVVPVIVVK--KLEHAVP----MAKALVAGGVRVLNVTLRTE---------------CAVDAIRAIAKEVPEA-IVGAG 72 (213)
T ss_dssp CSEEEEECCS--SGGGHHH----HHHHHHHTTCCEEEEESCST---------------THHHHHHHHHHHCTTS-EEEEE
T ss_pred CCEEEEEECC--CHHHHHH----HHHHHHHCCCCEEEEeCCCh---------------hHHHHHHHHHHHCCCC-eeecc
Confidence 3665556663 3333333 34456679999999986542 2377888888888886 69999
Q ss_pred CCCCHHHHHHHHHhCCChhh
Q 020423 275 GINTVDEVNAALRKGAHHVM 294 (326)
Q Consensus 275 gI~s~~da~~~l~~GaD~V~ 294 (326)
-|.|.++++++++.||++++
T Consensus 73 TV~~~~~~~~a~~aGa~Fiv 92 (213)
T d1wbha1 73 TVLNPQQLAEVTEAGAQFAI 92 (213)
T ss_dssp SCCSHHHHHHHHHHTCSCEE
T ss_pred ccccHHHHHHHHHCCCcEEE
Confidence 99999999999999999876
|
| >d1f74a_ c.1.10.1 (A:) N-acetylneuraminate lyase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: N-acetylneuraminate lyase species: Haemophilus influenzae [TaxId: 727]
Probab=95.26 E-value=0.74 Score=39.12 Aligned_cols=150 Identities=13% Similarity=0.043 Sum_probs=86.9
Q ss_pred CCCCCcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEE
Q 020423 121 SPEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVK 200 (326)
Q Consensus 121 ~~~~~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK 200 (326)
.+...|+++...+.+.++-.+.++.++++|+|+|-+- .|.-. + ...+.+.+-.+.+.+.++.|+.+=
T Consensus 70 ~~~~~~vi~gv~~~s~~~~iela~~a~~~Gad~i~~~--pP~~~--~---------~s~~~~~~~~~~v~~~~~~pi~iY 136 (293)
T d1f74a_ 70 AKDQIALIAQVGSVNLKEAVELGKYATELGYDCLSAV--TPFYY--K---------FSFPEIKHYYDTIIAETGSNMIVY 136 (293)
T ss_dssp HTTSSEEEEECCCSCHHHHHHHHHHHHHHTCSEEECC--CCCSS--C---------CCHHHHHHHHHHHHHHHCCCEEEE
T ss_pred ccCccccccccccccHHHHHHHHHHHHHcCCCEeecc--Ccccc--c---------cchHHHHHHHhcccccCCceEEEE
Confidence 3456789999999999999999999999999998663 23311 1 123445566666666778998874
Q ss_pred eccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHH
Q 020423 201 CRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVD 280 (326)
Q Consensus 201 ~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~ 280 (326)
-.+..... .+ ..+.+.++.+.-.+-.|-.+. .++..+.++.+..++..|+ .|+= .
T Consensus 137 n~P~~tg~-~l--~~~~l~~L~~~~~v~giK~~~------------------~~~~~~~~~~~~~~~~~v~-~g~~---~ 191 (293)
T d1f74a_ 137 SIPFLTGV-NM--GIEQFGELYKNPKVLGVKFTA------------------GDFYLLERLKKAYPNHLIW-AGFD---E 191 (293)
T ss_dssp CCSSCSCH-HH--HHHHHHHHHTSTTEEEEEECC------------------SCHHHHHHHHHHCTTSEEE-ECCG---G
T ss_pred eeccceec-cc--cchhhhhhhhcccccccccCC------------------CCHHHHHHHhhcCCCeEEE-eCcc---c
Confidence 33222211 11 122334444433333332221 1244455555555666544 4431 2
Q ss_pred HHHHHHHhCCChhhhhHHHHhCCchhHHh
Q 020423 281 EVNAALRKGAHHVMVGRAAYQNPWYTLGH 309 (326)
Q Consensus 281 da~~~l~~GaD~V~iGRall~dP~l~~~~ 309 (326)
.+...+..|+++...|.+-+ .|+++.+.
T Consensus 192 ~~~~~~~~G~~G~i~~~~n~-~P~~~~~~ 219 (293)
T d1f74a_ 192 MMLPAASLGVDGAIGSTFNV-NGVRARQI 219 (293)
T ss_dssp GHHHHHHTTCCEEEESTHHH-HHHHHHHH
T ss_pred ccchhhhCCCcccccccchh-cchHHHHH
Confidence 34556789999988887654 25544333
|
| >d1zfja1 c.1.5.1 (A:2-94,A:221-492) Inosine monophosphate dehydrogenase (IMPDH) {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Streptococcus pyogenes [TaxId: 1314]
Probab=95.23 E-value=0.015 Score=52.48 Aligned_cols=61 Identities=23% Similarity=0.282 Sum_probs=46.3
Q ss_pred hhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhh
Q 020423 223 SLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVG 296 (326)
Q Consensus 223 e~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iG 296 (326)
.++|+|.|.|+... |++ ....+.++++++.++++||| +|.|.|++.+.++++.|||+|-+|
T Consensus 116 ~~agvd~ivID~A~----G~s--------~~~~~~i~~ik~~~~~~~iI-aGNV~T~e~a~~L~~aGaD~VkVG 176 (365)
T d1zfja1 116 FEAGADAIVIDTAH----GHS--------AGVLRKIAEIRAHFPNRTLI-AGNIATAEGARALYDAGVDVVKVG 176 (365)
T ss_dssp HHHTCSEEEECCSC----TTC--------HHHHHHHHHHHHHCSSSCEE-EEEECSHHHHHHHHHTTCSEEEEC
T ss_pred HHcCCCEEEEECCc----ccc--------cchhHHHHHHHhhCCCccee-ecccccHHHHHHHHhcCCceEEee
Confidence 35899999997533 211 11245667777778888887 799999999999999999998776
|
| >d1vhca_ c.1.10.1 (A:) Hypothetical protein HI0047 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Hypothetical protein HI0047 species: Haemophilus influenzae [TaxId: 727]
Probab=95.22 E-value=0.056 Score=44.78 Aligned_cols=86 Identities=15% Similarity=0.126 Sum_probs=60.4
Q ss_pred HHHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHh
Q 020423 184 EAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLR 263 (326)
Q Consensus 184 eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~ 263 (326)
++++.+++. ++..=+|.. +.++..+ +++.+.+.|+..|.+.-++. ..++.+.++++
T Consensus 6 ~~~~~l~~~---~iipvlr~~--~~~~~~~----~~~al~~~Gi~~iEitl~~~---------------~a~~~I~~l~~ 61 (212)
T d1vhca_ 6 QIIEKLREL---KIVPVIALD--NADDILP----LADTLAKNGLSVAEITFRSE---------------AAADAIRLLRA 61 (212)
T ss_dssp HHHHHHHHH---CEEEEECCS--SGGGHHH----HHHHHHHTTCCEEEEETTST---------------THHHHHHHHHH
T ss_pred HHHHHHHHC---CEEEEEeCC--CHHHHHH----HHHHHHHCCCCEEEEeCCCh---------------hHHHHHHHHHh
Confidence 455555543 344334552 3333333 34456679999999986542 23677888888
Q ss_pred cCCCceEEEeCCCCCHHHHHHHHHhCCChhh
Q 020423 264 DFPDLTFTLNGGINTVDEVNAALRKGAHHVM 294 (326)
Q Consensus 264 ~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~ 294 (326)
+++++ ++++|-|.|.++++++++.||++++
T Consensus 62 ~~p~~-~vGaGTV~~~~~~~~a~~aGa~Fiv 91 (212)
T d1vhca_ 62 NRPDF-LIAAGTVLTAEQVVLAKSSGADFVV 91 (212)
T ss_dssp HCTTC-EEEEESCCSHHHHHHHHHHTCSEEE
T ss_pred cCCCc-eEeeeecccHHHHHHHHhhCCcEEE
Confidence 88785 7999999999999999999999876
|
| >d1mxsa_ c.1.10.1 (A:) KDPG aldolase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: KDPG aldolase species: Pseudomonas putida [TaxId: 303]
Probab=95.18 E-value=0.061 Score=44.64 Aligned_cols=61 Identities=16% Similarity=0.135 Sum_probs=49.8
Q ss_pred HHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhh
Q 020423 218 IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVM 294 (326)
Q Consensus 218 ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~ 294 (326)
+++.+.+.|+..|.+.-++. ..++.+..++++++++ ++++|.|.+.++++++++.||++++
T Consensus 34 ~~~al~~~Gi~~iEitl~~p---------------~a~~~i~~l~~~~p~~-~vGaGTV~~~~~~~~a~~aGa~Fiv 94 (216)
T d1mxsa_ 34 LADALAAGGIRTLEVTLRSQ---------------HGLKAIQVLREQRPEL-CVGAGTVLDRSMFAAVEAAGAQFVV 94 (216)
T ss_dssp HHHHHHHTTCCEEEEESSST---------------HHHHHHHHHHHHCTTS-EEEEECCCSHHHHHHHHHHTCSSEE
T ss_pred HHHHHHHCCCCEEEEeCCCh---------------hHHHHHHHHHHhCCCc-ceeeeeeecHHHHHHHHhCCCCEEE
Confidence 34456679999999986542 2367888888888885 7999999999999999999999875
|
| >d1eixa_ c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Decarboxylase domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) species: Escherichia coli [TaxId: 562]
Probab=95.16 E-value=0.1 Score=43.43 Aligned_cols=145 Identities=13% Similarity=0.140 Sum_probs=83.2
Q ss_pred CCCCcEEEEec-CCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC-CCcEEE
Q 020423 122 PEQHPIVLQIG-GSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSV 199 (326)
Q Consensus 122 ~~~~piivQL~-g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~-~~pv~v 199 (326)
+.+.+++.-+- +.-+.....+++.+.++|+|.+.+|.. || .+-+.+++++..+.- +.++.+
T Consensus 52 ~~~~~if~D~K~~DI~nt~~~~~~~~~~~~~~~~tvh~~------------~g-----~~~l~~~~~~~~~~~~~~~~~~ 114 (231)
T d1eixa_ 52 QRGFDIFLDLKFHDIPNTAAHAVAAAADLGVWMVNVHAS------------GG-----ARMMTAAREALVPFGKDAPLLI 114 (231)
T ss_dssp HTTCCEEEEEEECSCHHHHHHHHHHHHHHTCSEEEEBGG------------GC-----HHHHHHHHHTTGGGGGGCCEEE
T ss_pred hcCchhhHhhHhhcCcHHHHHHHHhhhcccceEEEEecc------------Cc-----HHHHHHHHHhhhhcCccceEEE
Confidence 35667777663 444667778888899999999999852 21 334444554443321 233333
Q ss_pred EeccC--CCC--------CccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCce
Q 020423 200 KCRIG--VDD--------HDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLT 269 (326)
Q Consensus 200 K~r~g--~~~--------~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iP 269 (326)
-+..- ++. .....+.....+....+.|++.+..+... ...+ .+....-.
T Consensus 115 ~v~~~ts~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------------------~~~~---~~~~~~~~ 173 (231)
T d1eixa_ 115 AVTVLTSMEASDLVDLGMTLSPADYAERLAALTQKCGLDGVVCSAQE------------------AVRF---KQVFGQEF 173 (231)
T ss_dssp EECSCTTCCHHHHHTTTCCSCHHHHHHHHHHHHHHTTCSEEECCGGG------------------HHHH---HHHHCSSS
T ss_pred EEeeccccccchhcccccccchhHHHHHHHHHHHHhccccccccchh------------------hhhh---hhhcCCcc
Confidence 33321 111 11233334445566677888887654321 2222 22222345
Q ss_pred EEEeCCCCCHH----------HHHHHHHhCCChhhhhHHHHhCCc
Q 020423 270 FTLNGGINTVD----------EVNAALRKGAHHVMVGRAAYQNPW 304 (326)
Q Consensus 270 VIa~GgI~s~~----------da~~~l~~GaD~V~iGRall~dP~ 304 (326)
++.+.||.... ...++++.|||.+.|||+++..++
T Consensus 174 ~~~tPGI~~~~~~~~dq~r~~tp~~Ai~~GaD~iIVGR~It~a~d 218 (231)
T d1eixa_ 174 KLVTPGIRPQGSEAGDQRRIMTPEQALSAGVDYMVIGRPVTQSVD 218 (231)
T ss_dssp EEEECCBCCTTCCCTTCCSCBCHHHHHHTTCSEEEECHHHHTSSS
T ss_pred ceecCCcccCCCCccCccccCCHHHHHHcCCCEEEECCcccCCCC
Confidence 67777764321 134567899999999999998655
|
| >d1dbta_ c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Decarboxylase domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) species: Bacillus subtilis [TaxId: 1423]
Probab=95.13 E-value=0.29 Score=40.68 Aligned_cols=144 Identities=15% Similarity=0.159 Sum_probs=83.0
Q ss_pred CCCcEEEEec-CCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC-----CCc
Q 020423 123 EQHPIVLQIG-GSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-----NVP 196 (326)
Q Consensus 123 ~~~piivQL~-g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~-----~~p 196 (326)
.+.++++-+- +.-+.....++..+.+.|+|.+.+|..+ | .+.+...++.+++.. ...
T Consensus 53 ~~~~IflD~K~~DIgnTv~~~~~~~~~~~~d~vtvh~~~-----------G------~~~i~aa~~~~~~~~~~~~~~~~ 115 (237)
T d1dbta_ 53 RNCELFLDLKLHDIPTTVNKAMKRLASLGVDLVNVHAAG-----------G------KKMMQAALEGLEEGTPAGKKRPS 115 (237)
T ss_dssp TTCEEEEEEEECSCHHHHHHHHHHHHTTTCSEEEEEGGG-----------C------HHHHHHHHHHHHHHSCTTSCCCE
T ss_pred cchheehhhhhccCchHHHHHHHhhhccccceEEeeccc-----------c------hHHHHHHHHhhhhcchhccccce
Confidence 4566776653 4446667777888888999999998521 1 445555666655532 112
Q ss_pred EEEEeccCCCC----------CccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCC
Q 020423 197 VSVKCRIGVDD----------HDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFP 266 (326)
Q Consensus 197 v~vK~r~g~~~----------~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~ 266 (326)
+..-......+ .....+......+...+.|++.+..++.. +..+++...
T Consensus 116 l~~v~~lts~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~g~v~s~~~---------------------~~~~r~~~~ 174 (237)
T d1dbta_ 116 LIAVTQLTSTSEQIMKDELLIEKSLIDTVVHYSKQAEESGLDGVVCSVHE---------------------AKAIYQAVS 174 (237)
T ss_dssp EEEECSCTTCCHHHHHHTSCBCSCHHHHHHHHHHHHHHTTCSEEECCGGG---------------------HHHHTTTSC
T ss_pred eEEEecccccchHHHHhhhhhhcccchhhHHHHHhhhhcCcceeecchhh---------------------hhhhccccc
Confidence 22211111111 11233333334555667899888765321 222333333
Q ss_pred CceEEEeCCCCCHH----------HHHHHHHhCCChhhhhHHHHhCCc
Q 020423 267 DLTFTLNGGINTVD----------EVNAALRKGAHHVMVGRAAYQNPW 304 (326)
Q Consensus 267 ~iPVIa~GgI~s~~----------da~~~l~~GaD~V~iGRall~dP~ 304 (326)
+-.++.+.||.-.. ...++++.|||.+.|||+++..++
T Consensus 175 ~~~~ivtPGI~~~~~~~~dq~r~~tp~~a~~~GaD~iIVGR~I~~s~d 222 (237)
T d1dbta_ 175 PSFLTVTPGIRMSEDAANDQVRVATPAIAREKGSSAIVVGRSITKAED 222 (237)
T ss_dssp TTCEEEECCBCCTTSCCTTCSSCBCHHHHHHTTCSEEEECHHHHTSSC
T ss_pred cceeEeccccccCCCCCCCceeeCCHHHHHHcCCCEEEECCcccCCCC
Confidence 44567777764321 145677899999999999997655
|
| >d1r0ma1 c.1.11.2 (A:133-375) N-acylamino acid racemase {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: N-acylamino acid racemase species: Deinococcus radiodurans [TaxId: 1299]
Probab=95.12 E-value=0.13 Score=42.85 Aligned_cols=127 Identities=11% Similarity=0.125 Sum_probs=83.0
Q ss_pred EEEEec-CCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC-CCcEEEEeccC
Q 020423 127 IVLQIG-GSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCRIG 204 (326)
Q Consensus 127 iivQL~-g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~-~~pv~vK~r~g 204 (326)
+-..+. ..+++++.+.++...+.||+.+-+..| | + .+ .+.++++|+.+ +..+.+-...+
T Consensus 7 ~y~s~g~~~~~e~~~~~~~~~~~~G~~~~KiKvg-~----------~----~D----~~~v~~ir~~~~d~~l~vD~n~~ 67 (243)
T d1r0ma1 7 VGVSLGIQADEQATVDLVRRHVEQGYRRIKLKIK-P----------G----WD----VQPVRATREAFPDIRLTVDANSA 67 (243)
T ss_dssp BCEEECCCSSHHHHHHHHHHHHHTTCSCEEEECB-T----------T----BS----HHHHHHHHHHCTTSCEEEECTTC
T ss_pred eeeEeCCCCCHHHHHHHHHHHHHcCCCEEEEEcC-c----------c----hh----HHHHHHHHHhccCceEEEecccc
Confidence 334433 468899999999999999999999753 1 1 12 24566677766 34454444444
Q ss_pred CCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHH
Q 020423 205 VDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNA 284 (326)
Q Consensus 205 ~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~ 284 (326)
|+. .+..+ + +.+++.++.++. . .+++.+++.++++++.. ++||.+.-.+.+..+..+
T Consensus 68 ~~~----~~a~~-~-~~l~~~~~~~iE----e------------P~~~~d~~~~~~l~~~~-~ipia~gE~~~~~~~~~~ 124 (243)
T d1r0ma1 68 YTL----ADAGR-L-RQLDEYDLTYIE----Q------------PLAWDDLVDHAELARRI-RTPLCLDESVASASDARK 124 (243)
T ss_dssp CCG----GGHHH-H-HTTGGGCCSCEE----C------------CSCTTCSHHHHHHHHHC-SSCEEESTTCCSHHHHHH
T ss_pred Cch----HHHHH-h-hhhhhccchhhh----h------------hccccchHHHHHHhhcC-Ccccccccchhhhhhhhh
Confidence 433 22233 3 345667777763 1 12233466677777765 899998889999999999
Q ss_pred HHHhC-CChhhh
Q 020423 285 ALRKG-AHHVMV 295 (326)
Q Consensus 285 ~l~~G-aD~V~i 295 (326)
+++.+ +|.|++
T Consensus 125 ~i~~~~~d~v~~ 136 (243)
T d1r0ma1 125 ALALGAGGVINL 136 (243)
T ss_dssp HHHHTSCSEEEE
T ss_pred hhhcccccceec
Confidence 99865 787765
|
| >d1eepa_ c.1.5.1 (A:) Inosine monophosphate dehydrogenase (IMPDH) {Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]
Probab=95.08 E-value=0.0071 Score=55.14 Aligned_cols=63 Identities=22% Similarity=0.297 Sum_probs=47.5
Q ss_pred HhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhh
Q 020423 221 VSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVG 296 (326)
Q Consensus 221 ~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iG 296 (326)
.+.++|+|.|.++... |++. ...+.++.+++.++++|| .+|++.|++.+.++++.|||+|-+|
T Consensus 158 ~L~~aG~D~ivID~Ah----G~s~--------~~~~~i~~ik~~~~~v~v-IaGNV~T~e~a~~L~~~GaD~VkVG 220 (388)
T d1eepa_ 158 ELVKAHVDILVIDSAH----GHST--------RIIELIKKIKTKYPNLDL-IAGNIVTKEAALDLISVGADCLKVG 220 (388)
T ss_dssp HHHHTTCSEEEECCSC----CSSH--------HHHHHHHHHHHHCTTCEE-EEEEECSHHHHHHHHTTTCSEEEEC
T ss_pred HHHhhccceeeeeccc----cchH--------HHHHHHHHHHHHCCCCce-eeccccCHHHHHHHHhcCCCeeeec
Confidence 3456999999998643 2111 114567777778888986 5788999999999999999999665
|
| >d1w3ia_ c.1.10.1 (A:) 2-keto-3-deoxy gluconate aldolase Eda {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: 2-keto-3-deoxy gluconate aldolase Eda species: Sulfolobus solfataricus [TaxId: 2287]
Probab=94.73 E-value=0.79 Score=38.91 Aligned_cols=141 Identities=16% Similarity=0.158 Sum_probs=83.0
Q ss_pred CCCCcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEe
Q 020423 122 PEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKC 201 (326)
Q Consensus 122 ~~~~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~ 201 (326)
+...++++.+.+.+.++-.+.++.++++|+|++-+.. |... .+ ...+-+.+-.++|.++++.|+.+=-
T Consensus 63 ~~~~~~i~gv~~~st~~~i~~a~~a~~~Ga~~~~~~~--P~~~-~~---------~~~~~i~~~f~~Ia~a~~~pi~lYn 130 (293)
T d1w3ia_ 63 DVTNKIIFQVGGLNLDDAIRLAKLSKDFDIVGIASYA--PYYY-PR---------MSEKHLVKYFKTLCEVSPHPVYLYN 130 (293)
T ss_dssp TTCSCEEEECCCSCHHHHHHHHHHGGGSCCSEEEEEC--CCSC-SS---------CCHHHHHHHHHHHHHHCSSCEEEEE
T ss_pred hhccccccccccchhhhhhhhhhhhhhhccccccccc--cchh-cc---------chHHHHHHHHHHHHHhhccceeeec
Confidence 3456788899888999999999999999999998753 3211 11 1345567778888788899988853
Q ss_pred cc---CCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCC
Q 020423 202 RI---GVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT 278 (326)
Q Consensus 202 r~---g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s 278 (326)
.+ |.+- +. ++ +.++ ..+..|--+. .++..+.++.+..+++.|+ +|. .
T Consensus 131 ~P~~~g~~l--~~-~~---~~~l---~ni~giK~ss------------------~d~~~~~~~~~~~~~~~v~-~G~-d- 180 (293)
T d1w3ia_ 131 YPTATGKDI--DA-KV---AKEI---GCFTGVKDTI------------------ENIIHTLDYKRLNPNMLVY-SGS-D- 180 (293)
T ss_dssp CHHHHSCCC--CH-HH---HHHH---CCEEEEEECC------------------SCHHHHHHHHHHCTTSEEE-ECC-S-
T ss_pred ccccccccc--ch-hh---HHhh---hhhhcccccc------------------ccHHHHHHHHhhccceecc-ccc-c-
Confidence 33 2211 12 22 2222 2232222110 1234444555555566654 443 1
Q ss_pred HHHHHHHHHhCCChhhhhHHHHhCCchh
Q 020423 279 VDEVNAALRKGAHHVMVGRAAYQNPWYT 306 (326)
Q Consensus 279 ~~da~~~l~~GaD~V~iGRall~dP~l~ 306 (326)
+.+...+..|+++.+.|.+-+ -|+++
T Consensus 181 -~~~~~~~~~Ga~G~is~~~n~-~P~~~ 206 (293)
T d1w3ia_ 181 -MLIATVASTGLDGNVAAGSNY-LPEVT 206 (293)
T ss_dssp -TTHHHHHHTTCCEEECGGGGT-CHHHH
T ss_pred -cchhhhhccCCceeeecccch-hhhhh
Confidence 235667788999988876532 34443
|
| >d1jr1a1 c.1.5.1 (A:17-112,A:233-514) Inosine monophosphate dehydrogenase (IMPDH) {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=94.52 E-value=0.015 Score=52.80 Aligned_cols=100 Identities=16% Similarity=0.318 Sum_probs=62.2
Q ss_pred CHHHHHHHHHHHHhcCCCcEEEE---------eccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcC
Q 020423 178 DPKFVGEAMSVIAANTNVPVSVK---------CRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENR 248 (326)
Q Consensus 178 r~~~l~eiv~avr~~~~~pv~vK---------~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~ 248 (326)
.++...+.++.+++....|+..+ ...+..+ +..+. ...+.++|+|.+.++..... .
T Consensus 80 ~~e~~~~ev~~v~~~~~~p~~~~~~~~~l~v~aavg~~~--~~~~~----~~~l~~agv~vi~id~a~g~----~----- 144 (378)
T d1jr1a1 80 TPEFQANEVRKVKKYEQYPLASKDAKKQLLCGAAIGTHE--DDKYR----LDLLALAGVDVVVLDSSQGN----S----- 144 (378)
T ss_dssp CHHHHHHHHHHHHTSCCCTTCCBCTTSCBCCEEEECSST--HHHHH----HHHHHHHTCCEEEECCSSCC----S-----
T ss_pred CHHHHHHHHheehhhhhCcccccccccCEEEEEEeccCH--HHHHH----HHHHHhhccceEeeeccCcc----c-----
Confidence 46666666777766554443221 2223222 11111 23445689999999865421 1
Q ss_pred CCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhh
Q 020423 249 TIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVG 296 (326)
Q Consensus 249 ~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iG 296 (326)
....+.++.+++..+++||| .|.+.|++.+.++++.|||+|-+|
T Consensus 145 ---~~~~~~i~~ik~~~~~~~iI-aGnVaT~e~a~~L~~aGAD~VkVG 188 (378)
T d1jr1a1 145 ---IFQINMIKYMKEKYPNLQVI-GGNVVTAAQAKNLIDAGVDALRVG 188 (378)
T ss_dssp ---HHHHHHHHHHHHHSTTCEEE-EEEECSHHHHHHHHHHTCSEEEEC
T ss_pred ---hhhHHHHHHHHHHCCCCcee-ecccccHHHHHHHHHhCCCEEeec
Confidence 01134566666677788875 899999999999999999998655
|
| >d1km4a_ c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Decarboxylase domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=94.35 E-value=0.18 Score=41.22 Aligned_cols=144 Identities=14% Similarity=0.086 Sum_probs=76.6
Q ss_pred CCcEEEEec-CCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEec
Q 020423 124 QHPIVLQIG-GSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCR 202 (326)
Q Consensus 124 ~~piivQL~-g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r 202 (326)
+.++++-+- +.-+......++.+.++|+|.+.+|..++ .+-+...+++..+ .+..+.+=..
T Consensus 54 ~~~i~~D~K~~DIg~t~~~~~~~~~~~gad~~TVh~~~g-----------------~~~i~~~~~~a~~-~~~~~~~l~~ 115 (212)
T d1km4a_ 54 GCRIIADFAVADIPETNEKICRATFKAGADAIIVHGFPG-----------------ADSVRACLNVAEE-MGREVFLLTE 115 (212)
T ss_dssp CCEEEEEEEECSCHHHHHHHHHHHHHTTCSEEEEESTTC-----------------HHHHHHHHHHHHH-HTCEEEEECS
T ss_pred ccceehhhhhhccccHHHHhHhhhccccccEEEEeccCC-----------------hHHHHHHHHHHHh-cCCccccchh
Confidence 446665553 33344445666677789999999996322 3334444444333 2333333222
Q ss_pred cCCCCC-ccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHH-
Q 020423 203 IGVDDH-DSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVD- 280 (326)
Q Consensus 203 ~g~~~~-~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~- 280 (326)
...... ...+...+.+.++..+.|++.+.+... ..+.+..+++...+-.++.++||....
T Consensus 116 ~s~~~~~~~~~~~~~~~~~~~~~~g~~g~v~~~~------------------~~~~i~~ir~~~~~~~~~vtpGI~~~g~ 177 (212)
T d1km4a_ 116 MSHPGAEMFIQGAADEIARMGVDLGVKNYVGPST------------------RPERLSRLREIIGQDSFLISPGVGAQGG 177 (212)
T ss_dssp CSSGGGGTTHHHHHHHHHHHHHHHTCCEEECCTT------------------CHHHHHHHHHHHCSSSEEEECCBSTTSB
T ss_pred hcchhhhhhhhhHHHHHHHHHHHhCCcccccccc------------------CHHHHhhhhhccCCceeEEcCccccCCC
Confidence 211111 112233333455555678877653211 133445555544445577889996321
Q ss_pred HHHHHHHhCCChhhhhHHHHhCCc
Q 020423 281 EVNAALRKGAHHVMVGRAAYQNPW 304 (326)
Q Consensus 281 da~~~l~~GaD~V~iGRall~dP~ 304 (326)
+..+.+ .++|.+.+||+++..++
T Consensus 178 ~~~d~~-~~ad~iIvGR~I~~a~d 200 (212)
T d1km4a_ 178 DPGETL-RFADAIIVGRSIYLADN 200 (212)
T ss_dssp CHHHHT-TTCSEEEECHHHHTSSS
T ss_pred CHHHHH-hhCCEEEECchhccCCC
Confidence 222222 47999999999997555
|
| >d1wuea1 c.1.11.2 (A:1127-1367) N-acylamino acid racemase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: N-acylamino acid racemase species: Enterococcus faecalis [TaxId: 1351]
Probab=94.17 E-value=0.42 Score=39.46 Aligned_cols=133 Identities=19% Similarity=0.299 Sum_probs=86.1
Q ss_pred cEEEEec-CCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC-CCcEEEEecc
Q 020423 126 PIVLQIG-GSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCRI 203 (326)
Q Consensus 126 piivQL~-g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~-~~pv~vK~r~ 203 (326)
|+-+.+. ..+++++.+.++.+.+.||+.+-+..| | + .+. +.++++|+.+ +..+.+-...
T Consensus 6 pv~~s~g~~~~~~~~~~~~~~~~~~G~~~~Kikvg-~----------~----~D~----~~v~~ir~~~~d~~l~vDaN~ 66 (241)
T d1wuea1 6 PVGISLGIQEDLPQLLKQVQLAVEKGYQRVKLKIR-P----------G----YDV----EPVALIRQHFPNLPLMVDANS 66 (241)
T ss_dssp ECCEEECCCSCHHHHHHHHHHHHHTTCSCEEEECB-T----------T----BSH----HHHHHHHHHCTTSCEEEECTT
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHCCCCEEEEEcC-c----------c----HHH----HHHHHHHHhccccceeecccc
Confidence 4444442 357889999999999999999999864 1 0 222 4456667665 4445544444
Q ss_pred CCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHH
Q 020423 204 GVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVN 283 (326)
Q Consensus 204 g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~ 283 (326)
+|+. ++... +.+ +++.++.++. . .+++-+++.+.++++.. ++||.+.-.+.+.++..
T Consensus 67 ~~~~----~~a~~-~~~-~~~~~i~~iE----e------------P~~~~~~~~~~~l~~~~-~~pIa~gE~~~~~~~~~ 123 (241)
T d1wuea1 67 AYTL----ADLPQ-LQR-LDHYQLAMIE----Q------------PFAADDFLDHAQLQREL-KTRICLDENIRSLKDCQ 123 (241)
T ss_dssp CCCG----GGHHH-HHG-GGGSCCSCEE----C------------CSCTTCSHHHHHHHTTC-SSCEEECTTCCSHHHHH
T ss_pred cCCH----HHhhh-hhh-hhhhhhhhhc----C------------cccccchhhhhhhhccc-ccccccCcccccchhhh
Confidence 4432 23333 343 3557776653 0 11223466677776664 89999888999999999
Q ss_pred HHHHhC-CChhhhhHHHH
Q 020423 284 AALRKG-AHHVMVGRAAY 300 (326)
Q Consensus 284 ~~l~~G-aD~V~iGRall 300 (326)
.+++.+ +|.+++--.-+
T Consensus 124 ~~i~~~~~d~i~~d~~~~ 141 (241)
T d1wuea1 124 VALALGSCRSINLKIPRV 141 (241)
T ss_dssp HHHHHTCCSEEEECHHHH
T ss_pred hhhhhhhhhhhccccccc
Confidence 999976 89998865443
|
| >d1twda_ c.1.30.1 (A:) Copper homeostasis protein CutC {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: CutC-like family: CutC-like domain: Copper homeostasis protein CutC species: Shigella flexneri [TaxId: 623]
Probab=94.04 E-value=0.45 Score=39.90 Aligned_cols=123 Identities=9% Similarity=0.067 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHH
Q 020423 137 DNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 216 (326)
Q Consensus 137 ~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~ 216 (326)
+.+.+-.+.++++|+|||-+-+-.+. +. -+.+.+.++++..+ +.++++--.+ +...+..+.
T Consensus 72 ~~M~~di~~~k~~G~dGvV~G~L~~d------g~------iD~~~~~~L~~~a~---~l~vTFHRAf--D~~~d~~~a-- 132 (247)
T d1twda_ 72 AAILEDVRTVRELGFPGLVTGVLDVD------GN------VDMPRMEKIMAAAG---PLAVTFHRAF--DMCANPLYT-- 132 (247)
T ss_dssp HHHHHHHHHHHHTTCSEEEECCBCTT------SS------BCHHHHHHHHHHHT---TSEEEECGGG--GGCSCHHHH--
T ss_pred HHHHHHHHHHHHcCCCeEEEEEECCC------CC------ccHHHHHHHHHHhc---ccCeeeehhh--hhhCCHHHH--
Confidence 44556777889999999998653232 11 35677777777653 4555554333 332333333
Q ss_pred HHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChh
Q 020423 217 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHV 293 (326)
Q Consensus 217 ~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V 293 (326)
+..+ .+.|++.|--||+... -....+.++++.+...+.-|++.||| +.+.+.++++.|++-+
T Consensus 133 -l~~L-i~lG~~rILTSGg~~~------------a~~G~~~L~~L~~~a~~~iIm~GgGI-~~~Ni~~l~~~g~~e~ 194 (247)
T d1twda_ 133 -LNNL-AELGIARVLTSGQKSD------------ALQGLSKIMELIAHRDAPIIMAGAGV-RAENLHHFLDAGVLEV 194 (247)
T ss_dssp -HHHH-HHHTCCEEEECTTSSS------------TTTTHHHHHHHHTSSSCCEEEEESSC-CTTTHHHHHHHTCSEE
T ss_pred -HHHH-HhcCCCeEeccCCCCc------------hhHHHHHHHHHHHhcCCcEEEecCCC-CHHHHHHHHHcCCCEE
Confidence 3333 3469999987775421 01126777788776544457888898 5556777777775544
|
| >d1xkya1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {Bacillus anthracis [TaxId: 1392]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Dihydrodipicolinate synthase species: Bacillus anthracis [TaxId: 1392]
Probab=93.95 E-value=1.5 Score=36.92 Aligned_cols=139 Identities=15% Similarity=0.108 Sum_probs=83.4
Q ss_pred CCCCCcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEE
Q 020423 121 SPEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVK 200 (326)
Q Consensus 121 ~~~~~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK 200 (326)
.....|++++..+.+.++-.+.++.++++|+|++-+. .|.. |. ...+-+.+-.++|.++++.|+.+=
T Consensus 69 ~~~~~~vi~gv~~~s~~~~i~~a~~a~~~Gad~ilv~--pP~~-------~~----~s~~~i~~~~~~v~~~~~~pi~iY 135 (292)
T d1xkya1 69 VDKRVPVIAGTGSNNTHASIDLTKKATEVGVDAVMLV--APYY-------NK----PSQEGMYQHFKAIAESTPLPVMLY 135 (292)
T ss_dssp HTTSSCEEEECCCSCHHHHHHHHHHHHHTTCSEEEEE--CCCS-------SC----CCHHHHHHHHHHHHHTCSSCEEEE
T ss_pred hCCCceEEEecCcccHHHHHHHHHHHHHcCCCEEEEC--CCCC-------CC----CCHHHHHHHHHHHhccCCCcEEEE
Confidence 3456799999999999999999999999999999985 2331 11 234566778888888889999885
Q ss_pred ecc---CCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcC-CCceEEEeCCC
Q 020423 201 CRI---GVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF-PDLTFTLNGGI 276 (326)
Q Consensus 201 ~r~---g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~-~~iPVIa~GgI 276 (326)
-.+ +.. -+.+ + +.++.+.-++..+--++. +......+.+.. .+..|+ .|.
T Consensus 136 n~P~~~~~~--~~~~-~---~~~l~~~p~v~giK~~~~------------------~~~~~~~~~~~~~~~~~v~-~G~- 189 (292)
T d1xkya1 136 NVPGRSIVQ--ISVD-T---VVRLSEIENIVAIKDAGG------------------DVLTMTEIIEKTADDFAVY-SGD- 189 (292)
T ss_dssp ECHHHHSSC--CCHH-H---HHHHHTSTTEEEEEECSS------------------CHHHHHHHHHHSCTTCEEE-ESS-
T ss_pred eCCcccCCc--cCHH-H---HhhhccCCCEEEEecccc------------------chhhhheeeeecCCCCEEE-ECC-
Confidence 322 211 1222 2 233333334444432211 122233333332 245444 333
Q ss_pred CCHHHHHHHHHhCCChhhhhHHHH
Q 020423 277 NTVDEVNAALRKGAHHVMVGRAAY 300 (326)
Q Consensus 277 ~s~~da~~~l~~GaD~V~iGRall 300 (326)
.......+..|++++..|.+-+
T Consensus 190 --~~~~~~~~~~G~~G~~~~~~n~ 211 (292)
T d1xkya1 190 --DGLTLPAMAVGAKGIVSVASHV 211 (292)
T ss_dssp --GGGHHHHHHTTCCEEEESTHHH
T ss_pred --ccccchHHHcCCCccccchhhH
Confidence 1334556678999988887643
|
| >d1qapa1 c.1.17.1 (A:130-296) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Nicotinate/Quinolinate PRTase C-terminal domain-like family: NadC C-terminal domain-like domain: Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=93.89 E-value=0.2 Score=39.65 Aligned_cols=62 Identities=8% Similarity=0.151 Sum_probs=45.6
Q ss_pred hCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcC-CCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhC
Q 020423 224 LSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF-PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN 302 (326)
Q Consensus 224 ~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~-~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~d 302 (326)
++|+|.|-+..-+ .+.+++.++.. +++.+-++||| +.+.+.++.+.|+|.+.+|.....-
T Consensus 97 ~~g~diImLDN~~------------------pe~~~~av~~i~~~~~lEaSGgI-~~~ni~~ya~~GVD~IS~galt~~a 157 (167)
T d1qapa1 97 KAGADIIMLDNFN------------------TDQMREAVKRVNGQARLEVSGNV-TAETLREFAETGVDFISVGALTKHV 157 (167)
T ss_dssp HTTCSEEEESSCC------------------HHHHHHHHHTTCTTCCEEECCCS-CHHHHHHHHHTTCSEEECSHHHHEE
T ss_pred hcCCcEEEecCCC------------------HHHHHHHHHhcCCceEEEEeCCC-CHHHHHHHHHcCCCEEECCcccCCC
Confidence 5899999875421 23344444432 46888899999 8999999999999999999876554
Q ss_pred Cc
Q 020423 303 PW 304 (326)
Q Consensus 303 P~ 304 (326)
|+
T Consensus 158 ~~ 159 (167)
T d1qapa1 158 RA 159 (167)
T ss_dssp EC
T ss_pred Cc
Confidence 43
|
| >d1vrda1 c.1.5.1 (A:1-85,A:213-457) Inosine monophosphate dehydrogenase (IMPDH) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Thermotoga maritima [TaxId: 2336]
Probab=93.86 E-value=0.082 Score=46.73 Aligned_cols=97 Identities=20% Similarity=0.307 Sum_probs=58.8
Q ss_pred CHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHH
Q 020423 178 DPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEY 257 (326)
Q Consensus 178 r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~ 257 (326)
.++...+.++.+++. ..++.+-+..+ . +.. +. +..+ -++|+|.++++.... .+ ....+.
T Consensus 71 ~~e~~~~~i~~vk~~-~~~v~~~vgv~--~-~~~-e~---~~~l-i~agvd~ivId~A~G----~~--------~~~~~~ 129 (330)
T d1vrda1 71 TPDEQARQVSIVKKT-RLLVGAAVGTS--P-ETM-ER---VEKL-VKAGVDVIVIDTAHG----HS--------RRVIET 129 (330)
T ss_dssp CHHHHHHHHHHHHTC-CBCCEEEECSS--T-THH-HH---HHHH-HHTTCSEEEECCSCC----SS--------HHHHHH
T ss_pred chhhhHHHHHHHhhh-ccEEEEEEecC--H-HHH-HH---HHHH-HHCCCCEEEEecCCC----Cc--------hhHHHH
Confidence 356666666666542 33343333332 2 122 22 2233 358999999875331 11 111355
Q ss_pred HHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhh
Q 020423 258 YYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVG 296 (326)
Q Consensus 258 i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iG 296 (326)
++.+++..+++|| ..|.+.+++.++++++.|||+|-+|
T Consensus 130 ik~ik~~~~~~~v-iaGnV~t~~~a~~l~~~GaD~v~VG 167 (330)
T d1vrda1 130 LEMIKADYPDLPV-VAGNVATPEGTEALIKAGADAVKVG 167 (330)
T ss_dssp HHHHHHHCTTSCE-EEEEECSHHHHHHHHHTTCSEEEEC
T ss_pred HHHHHHhCCCCCE-EeechhHHHHHHHHHHcCCCEEeec
Confidence 6677777778874 4677889999999999999998664
|
| >d1gvfa_ c.1.10.2 (A:) Tagatose-1,6-bisphosphate aldolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class II FBP aldolase domain: Tagatose-1,6-bisphosphate aldolase species: Escherichia coli [TaxId: 562]
Probab=93.69 E-value=0.45 Score=40.80 Aligned_cols=151 Identities=14% Similarity=0.163 Sum_probs=94.4
Q ss_pred CCCcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEec
Q 020423 123 EQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCR 202 (326)
Q Consensus 123 ~~~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r 202 (326)
...|+.++|-|... .+..+++.++||+-|-+..+.- .++.+.+...++++..++ .+++|-.-+-
T Consensus 72 ~~vpV~lHlDH~~~---~e~i~~ai~~GftSVMiD~S~l------------p~eeNi~~t~~vv~~ah~-~gv~VE~ElG 135 (284)
T d1gvfa_ 72 YNMPLALHLDHHES---LDDIRRKVHAGVRSAMIDGSHF------------PFAENVKLVKSVVDFCHS-QDCSVEAELG 135 (284)
T ss_dssp TTSCBEEEEEEECC---HHHHHHHHHTTCCEEEECCTTS------------CHHHHHHHHHHHHHHHHH-TTCEEEEEES
T ss_pred cCCeEEeeeccccc---hHHHHHHHhcCCCeEEEECCCC------------CHHHHHHHHHHHHHHHHh-hccceeeeee
Confidence 35667777754321 2234556778988888864311 123567777788777644 4555555443
Q ss_pred c--CCCC----------CccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceE
Q 020423 203 I--GVDD----------HDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTF 270 (326)
Q Consensus 203 ~--g~~~----------~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPV 270 (326)
. +.++ ..++++..+| .++.|+|.+-++-++.. +.+. ..+.++++.++++.+.. ++|+
T Consensus 136 ~v~g~ed~~~~~~~~~~~T~peea~~F----v~~TgvD~LAvaiGt~H-G~y~-----~~p~l~~~~L~~i~~~~-~vPL 204 (284)
T d1gvfa_ 136 RLGGVEDDMSVDAESAFLTDPQEAKRF----VELTGVDSLAVAIGTAH-GLYS-----KTPKIDFQRLAEIREVV-DVPL 204 (284)
T ss_dssp CCC-----------CCSSCCHHHHHHH----HHHHCCSEEEECSSCCS-SCCS-----SCCCCCHHHHHHHHHHC-CSCE
T ss_pred eeccccccccccccccccCCHHHHHHH----HHHhCCCEEeeecCcee-eccC-----CCCccccchhhhhhccc-cCCe
Confidence 2 1111 1235555544 45679999999876641 1111 12446789998887765 8999
Q ss_pred EEeCCCCCHH-HHHHHHHhCCChhhhhHHHH
Q 020423 271 TLNGGINTVD-EVNAALRKGAHHVMVGRAAY 300 (326)
Q Consensus 271 Ia~GgI~s~~-da~~~l~~GaD~V~iGRall 300 (326)
+.=||-..++ ++.++++.|..=|-++|.+-
T Consensus 205 VlHGgSG~~~e~i~~ai~~Gi~KiNi~T~l~ 235 (284)
T d1gvfa_ 205 VLHGASDVPDEFVRRTIELGVTKVNVATELK 235 (284)
T ss_dssp EECCCTTCCHHHHHHHHHTTEEEEEECHHHH
T ss_pred EeeCCCCCCHHHHHHHHHcCeEEEEechHHH
Confidence 9999877665 57788889988888888763
|
| >d1jdfa1 c.1.11.2 (A:138-446) D-glucarate dehydratase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: D-glucarate dehydratase species: Escherichia coli [TaxId: 562]
Probab=93.67 E-value=0.22 Score=43.36 Aligned_cols=127 Identities=15% Similarity=0.069 Sum_probs=80.6
Q ss_pred CCHHHHHHHHHHHHHC-CCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCC-CcEEEEeccCCCCCccH
Q 020423 134 SNLDNLAKATELANAY-NYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTN-VPVSVKCRIGVDDHDSY 211 (326)
Q Consensus 134 ~~~~~f~~aA~~a~~a-G~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~-~pv~vK~r~g~~~~~~~ 211 (326)
.+++++++.|+.+.+. ||+.+-+..|. ..++.-.+.++++|++++ ..+.+ .....-+.
T Consensus 46 ~~p~~~~~~a~~~~~~~Gf~~~KiKvG~----------------~~~~~di~~v~avr~~~pd~~l~v----DaN~~~s~ 105 (309)
T d1jdfa1 46 MTPDAVVRLAEAAYEKYGFNDFKLKGGV----------------LAGEEEAESIVALAQRFPQARITL----DPNGAWSL 105 (309)
T ss_dssp CSHHHHHHHHHHHHHHHCCSCEEEECSS----------------SCHHHHHHHHHHHHHHCTTSCEEE----ECTTBBCH
T ss_pred CCHHHHHHHHHHHHHhcCCCeEEEECCC----------------CCHHHHHHHHHHHHHHCCCCeEEe----eccCCCCH
Confidence 4689999999888764 99999986541 224555678888888873 33433 32333345
Q ss_pred HHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhC-C
Q 020423 212 NQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKG-A 290 (326)
Q Consensus 212 ~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~G-a 290 (326)
++.++ +.+.++ .++.++. .+. ..+ . .....+.++++.+.. ++||.+.-.+.+..+..++++.+ +
T Consensus 106 ~~Ai~-~~~~le-~~l~w~E----EPv-----~~~--d-~~~~~~~l~~lr~~~-~ipIa~gE~~~~~~~~~~~i~~~a~ 170 (309)
T d1jdfa1 106 NEAIK-IGKYLK-GSLAYAE----DPC-----GAE--Q-GFSGREVMAEFRRAT-GLPTATNMIATDWRQMGHTLSLQSV 170 (309)
T ss_dssp HHHHH-HHHHTT-TTCSCEE----SCB-----CCB--T-TBCHHHHHHHHHHHH-CCCEEESSSSSSHHHHHHHHHHTCC
T ss_pred HHHHH-HHHHHh-hcchhhh----hhc-----ccC--c-chhhHHHHHHhhccc-ccceecCcccchhhhhhhhhhhccc
Confidence 56565 445665 5676653 110 000 0 011245566666664 89998888999999999999865 7
Q ss_pred Chhhh
Q 020423 291 HHVMV 295 (326)
Q Consensus 291 D~V~i 295 (326)
|.++.
T Consensus 171 di~~~ 175 (309)
T d1jdfa1 171 DIPLA 175 (309)
T ss_dssp SEEBC
T ss_pred eeeec
Confidence 76654
|
| >d1vc4a_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Indole-3-glycerophosphate synthase, IPGS species: Thermus thermophilus [TaxId: 274]
Probab=93.60 E-value=0.13 Score=43.66 Aligned_cols=72 Identities=11% Similarity=-0.018 Sum_probs=58.1
Q ss_pred HHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhH
Q 020423 218 IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGR 297 (326)
Q Consensus 218 ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGR 297 (326)
+++.+++.|+++|.|-....+.+| .++.+..+++.. ++||..---|-++.++.++...|||+|.+--
T Consensus 70 ~A~~y~~~GA~aiSVLTe~~~F~G------------s~~dl~~v~~~~-~iPvLrKDFIid~~QI~ea~~~GADaVLLIa 136 (254)
T d1vc4a_ 70 AALAYARGGARAVSVLTEPHRFGG------------SLLDLKRVREAV-DLPLLRKDFVVDPFMLEEARAFGASAALLIV 136 (254)
T ss_dssp HHHHHHHTTCSEEEEECCCSSSCC------------CHHHHHHHHHHC-CSCEEEESCCCSHHHHHHHHHTTCSEEEEEH
T ss_pred HHHHHHhcCCceEEEEcCcccccc------------cHHHHHHHHHHc-CCCcccCCccccHHHHHHHHhccchHHHHHH
Confidence 466778999999999865433332 367777776654 9999999999999999999999999999987
Q ss_pred HHHhC
Q 020423 298 AAYQN 302 (326)
Q Consensus 298 all~d 302 (326)
+++.+
T Consensus 137 all~~ 141 (254)
T d1vc4a_ 137 ALLGE 141 (254)
T ss_dssp HHHGG
T ss_pred HHHHH
Confidence 77654
|
| >d1wa3a1 c.1.10.1 (A:2-203) KDPG aldolase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: KDPG aldolase species: Thermotoga maritima [TaxId: 2336]
Probab=93.25 E-value=0.16 Score=41.51 Aligned_cols=67 Identities=10% Similarity=-0.029 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcC-CCceEEEeCCCCCHHHHHHHHHhC
Q 020423 211 YNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF-PDLTFTLNGGINTVDEVNAALRKG 289 (326)
Q Consensus 211 ~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~-~~iPVIa~GgI~s~~da~~~l~~G 289 (326)
.++..+ +++.+.+.|+..+.+.-|+. ..++.++++++.. +++ ++++|-|.|.++++++++.|
T Consensus 20 ~~~a~~-~~~al~~~Gi~~iEitlr~p---------------~a~~~i~~l~~~~~~~~-~vGaGTV~~~~~~~~a~~aG 82 (202)
T d1wa3a1 20 VEEAKE-KALAVFEGGVHLIEITFTVP---------------DADTVIKELSFLKEKGA-IIGAGTVTSVEQCRKAVESG 82 (202)
T ss_dssp HHHHHH-HHHHHHHTTCCEEEEETTST---------------THHHHHHHTHHHHHTTC-EEEEESCCSHHHHHHHHHHT
T ss_pred HHHHHH-HHHHHHHcCCCEEEEecCCc---------------cHHHHHHHHHHhcCCCc-EEEecccccHHHHHHHHhhc
Confidence 334444 45566689999999986542 2256666655432 344 79999999999999999999
Q ss_pred CChhh
Q 020423 290 AHHVM 294 (326)
Q Consensus 290 aD~V~ 294 (326)
|++++
T Consensus 83 a~fiv 87 (202)
T d1wa3a1 83 AEFIV 87 (202)
T ss_dssp CSEEE
T ss_pred ccEEe
Confidence 99875
|
| >d1o66a_ c.1.12.8 (A:) Ketopantoate hydroxymethyltransferase PanB {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Ketopantoate hydroxymethyltransferase PanB domain: Ketopantoate hydroxymethyltransferase PanB species: Neisseria meningitidis [TaxId: 487]
Probab=93.17 E-value=1.4 Score=37.02 Aligned_cols=157 Identities=10% Similarity=0.009 Sum_probs=87.9
Q ss_pred CCCChHHHHHHHHHcCCCcEEEecceeeccc-ccccc---chhhhhh------cCCCCCcEEEEe-c---CCCHHHHHHH
Q 020423 77 MDWTDNHYRTLARLISKHAWLYTEMLAAETI-IYQQG---NLDRFLA------FSPEQHPIVLQI-G---GSNLDNLAKA 142 (326)
Q Consensus 77 ~~~s~~~~r~~~~~~Gg~gli~te~~~~~~~-~~~~~---~~~~~~~------~~~~~~piivQL-~---g~~~~~f~~a 142 (326)
.+.-|..++.++.+.| ++++.++-....-. .+.+. ..+..+. ......-+++.+ + ....++..++
T Consensus 20 lTayd~~~A~~ae~ag-iDiilVGDSlgm~~~G~~~T~~vt~d~mi~h~~aV~rga~~~~~i~dmPf~sy~~~~~~~~~a 98 (260)
T d1o66a_ 20 LTAYESSFAALMDDAG-VEMLLVGDSLGMAVQGRKSTLPVSLRDMCYHTECVARGAKNAMIVSDLPFGAYQQSKEQAFAA 98 (260)
T ss_dssp EECCSHHHHHHHHHTT-CCEEEECTTHHHHTTCCSSSTTCCHHHHHHHHHHHHHHCSSSEEEEECCTTSSSSCHHHHHHH
T ss_pred EeCCCHHHHHHHHHcC-CCEEEEcCCchheecCCCCccccchhhhhhhhHHHHccCcceeeecchhhhhhcchhHHHHHH
Confidence 3456778888777766 89988764321111 11110 0111110 112233455555 2 3467888889
Q ss_pred HHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEecc--C---CC----C---Ccc
Q 020423 143 TELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRI--G---VD----D---HDS 210 (326)
Q Consensus 143 A~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~--g---~~----~---~~~ 210 (326)
+.++.++|+|+|-+..+. . ..++++++.+ .++||.--+.+ . +. . ..+
T Consensus 99 ~~~~~~~gadavk~eg~~----------------~----~~~~i~~l~~-~gIPV~gHiGl~Pq~~~~~gG~r~~Gk~~e 157 (260)
T d1o66a_ 99 AAELMAAGAHMVKLEGGV----------------W----MAETTEFLQM-RGIPVCAHIGLTPQSVFAFGGYKVQGRGGK 157 (260)
T ss_dssp HHHHHHTTCSEEEEECSG----------------G----GHHHHHHHHH-TTCCEEEEEESCGGGTTC-----------C
T ss_pred HHHHHHhhhhhccccchh----------------h----hhHHHHHHHH-cCCeeEeecccccchheecCcceeccccch
Confidence 999999999999985321 1 1234555543 37888754432 1 10 0 012
Q ss_pred HHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCC
Q 020423 211 YNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGG 275 (326)
Q Consensus 211 ~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~Gg 275 (326)
..++.+ -++.+|++|+..+.+..-. .+..+++.++ ++||+|+-|.
T Consensus 158 ~~~l~~-~a~~le~AGa~~ivlE~Vp------------------~~va~~It~~-~~iptIgIGa 202 (260)
T d1o66a_ 158 AQALLN-DAKAHDDAGAAVVLMECVL------------------AELAKKVTET-VSCPTIGIGA 202 (260)
T ss_dssp HHHHHH-HHHHHHHTTCSEEEEESCC------------------HHHHHHHHHH-CSSCEEEESS
T ss_pred hHHHHH-HHHHHHHhhhhehhhhhcc------------------HHHHHHHHhh-hcceeeeccC
Confidence 234555 4667899999999886421 3444455555 5999998763
|
| >d1s2wa_ c.1.12.7 (A:) Phosphoenolpyruvate mutase {Blue mussel (Mytilus edulis) [TaxId: 6550]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Phosphoenolpyruvate mutase/Isocitrate lyase-like domain: Phosphoenolpyruvate mutase species: Blue mussel (Mytilus edulis) [TaxId: 6550]
Probab=93.00 E-value=0.14 Score=43.94 Aligned_cols=107 Identities=8% Similarity=0.108 Sum_probs=62.4
Q ss_pred hhhhcCCCCCcE-EEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCC
Q 020423 116 RFLAFSPEQHPI-VLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTN 194 (326)
Q Consensus 116 ~~~~~~~~~~pi-ivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~ 194 (326)
++.+++.++.++ .... .+ +-.|+.++++||+++=+....=.......|. | ++ ..+.+.+.++.|.+.++
T Consensus 7 ~lr~l~~~~~~~~~p~~--~D----a~SAr~~e~aGf~a~~~ss~~~aas~G~pD~-~--~l-t~~e~~~~~~~I~~~~~ 76 (275)
T d1s2wa_ 7 QLKQMLNSKDLEFIMEA--HN----GLSARIVQEAGFKGIWGSGLSVSAQLGVRDS-N--EA-SWTQVVEVLEFMSDASD 76 (275)
T ss_dssp HHHHHHHSSSCEEEEEE--CS----HHHHHHHHHHTCSCEEECCHHHHHTC-------------CHHHHHHHHHHHHTCS
T ss_pred HHHHHHhCCCCEEeecC--cC----HHHHHHHHHcCCCEEEhhHHHHHHHcCCCCC-C--cc-chhhHHHHHHhhhcccC
Confidence 333444455544 4444 34 3467788889999998852100000011121 1 22 24556677778888889
Q ss_pred CcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCC
Q 020423 195 VPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRK 236 (326)
Q Consensus 195 ~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~ 236 (326)
+||++-+-.|+.+..++.++ + +.++++|+..|++....
T Consensus 77 lPv~~D~d~GyG~~~~v~~t---v-~~~~~aGaagi~iEDq~ 114 (275)
T d1s2wa_ 77 VPILLDADTGYGNFNNARRL---V-RKLEDRGVAGACLEDKL 114 (275)
T ss_dssp SCEEEECCSSCSSHHHHHHH---H-HHHHHTTCCEEEEECBC
T ss_pred CceeEecccccccchHHHHH---H-HHHHHhccceeEeeccc
Confidence 99999999987543333333 3 34678999999997643
|
| >d1qpoa1 c.1.17.1 (A:117-285) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Nicotinate/Quinolinate PRTase C-terminal domain-like family: NadC C-terminal domain-like domain: Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=92.29 E-value=0.14 Score=40.78 Aligned_cols=90 Identities=16% Similarity=0.217 Sum_probs=57.9
Q ss_pred HHHHHHHHhcC-CCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccH-HHHHH
Q 020423 183 GEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKY-EYYYA 260 (326)
Q Consensus 183 ~eiv~avr~~~-~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~-~~i~~ 260 (326)
.+.++.+++.. ..++.|-+ ++.++..+ . .+.|+|.|-+..-. |... +.+..
T Consensus 67 ~~~i~~~k~~~~~~~I~VEv-------~s~~q~~~----a-~~~~~diImLDN~s---------------p~~~k~~v~~ 119 (169)
T d1qpoa1 67 VDALRAVRNAAPDLPCEVEV-------DSLEQLDA----V-LPEKPELILLDNFA---------------VWQTQTAVQR 119 (169)
T ss_dssp HHHHHHHHHHCTTSCEEEEE-------SSHHHHHH----H-GGGCCSEEEEETCC---------------HHHHHHHHHH
T ss_pred hhhhhhhhhhcCCCceEEEe-------ccHHHhhh----h-hhcCCcEEEecCcC---------------hHhHHHHHHH
Confidence 55666766654 34455432 34444432 2 35899999876422 1111 23333
Q ss_pred HHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHH
Q 020423 261 LLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAY 300 (326)
Q Consensus 261 i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall 300 (326)
+....+++.+-++||| +.+.+.++...|+|.+.+|....
T Consensus 120 ~~~~~~~i~lEaSGgI-~~~ni~~ya~~GvD~IS~galt~ 158 (169)
T d1qpoa1 120 RDSRAPTVMLESSGGL-SLQTAATYAETGVDYLAVGALTH 158 (169)
T ss_dssp HHHHCTTCEEEEESSC-CTTTHHHHHHTTCSEEECGGGTS
T ss_pred hhccCCeeEEEEeCCC-CHHHHHHHHHcCCCEEECCcccc
Confidence 3444567889999999 89999999999999999995443
|
| >d1xkya1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {Bacillus anthracis [TaxId: 1392]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Dihydrodipicolinate synthase species: Bacillus anthracis [TaxId: 1392]
Probab=92.17 E-value=2.1 Score=35.96 Aligned_cols=126 Identities=14% Similarity=0.056 Sum_probs=75.2
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC--CCcEEEEeccCCCCCccHH
Q 020423 135 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYN 212 (326)
Q Consensus 135 ~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~--~~pv~vK~r~g~~~~~~~~ 212 (326)
+.+.+.+-++.+.+.|+|++=++... ++ +.+| ..+.-.++++.+.+.+ +.|+.+.+.. .+..
T Consensus 22 D~~~~~~~i~~l~~~Gv~gl~~~G~t--------GE-~~~L--s~~Er~~l~~~~~~~~~~~~~vi~gv~~-----~s~~ 85 (292)
T d1xkya1 22 DFAKTTKLVNYLIDNGTTAIVVGGTT--------GE-SPTL--TSEEKVALYRHVVSVVDKRVPVIAGTGS-----NNTH 85 (292)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEESSTT--------TT-GGGS--CHHHHHHHHHHHHHHHTTSSCEEEECCC-----SCHH
T ss_pred CHHHHHHHHHHHHHCCCCEEEECeEc--------cc-hhhC--CHHHHHHHHHHHHHHhCCCceEEEecCc-----ccHH
Confidence 67889999999999999999997532 22 2111 1222333344444333 5688775443 2345
Q ss_pred HHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEE------eCCCCCHHHHHHHH
Q 020423 213 QLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTL------NGGINTVDEVNAAL 286 (326)
Q Consensus 213 e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa------~GgI~s~~da~~~l 286 (326)
+.++ .++..++.|+|.+.+..... ...+ ...-++++.++.+.. ++||+. .|.-.+++.+.++.
T Consensus 86 ~~i~-~a~~a~~~Gad~ilv~pP~~--~~~s-------~~~i~~~~~~v~~~~-~~pi~iYn~P~~~~~~~~~~~~~~l~ 154 (292)
T d1xkya1 86 ASID-LTKKATEVGVDAVMLVAPYY--NKPS-------QEGMYQHFKAIAEST-PLPVMLYNVPGRSIVQISVDTVVRLS 154 (292)
T ss_dssp HHHH-HHHHHHHTTCSEEEEECCCS--SCCC-------HHHHHHHHHHHHHTC-SSCEEEEECHHHHSSCCCHHHHHHHH
T ss_pred HHHH-HHHHHHHcCCCEEEECCCCC--CCCC-------HHHHHHHHHHHhccC-CCcEEEEeCCcccCCccCHHHHhhhc
Confidence 5555 35567889999999875321 1100 011245666666654 789876 25556777776654
Q ss_pred H
Q 020423 287 R 287 (326)
Q Consensus 287 ~ 287 (326)
+
T Consensus 155 ~ 155 (292)
T d1xkya1 155 E 155 (292)
T ss_dssp T
T ss_pred c
Confidence 4
|
| >d1hl2a_ c.1.10.1 (A:) N-acetylneuraminate lyase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: N-acetylneuraminate lyase species: Escherichia coli [TaxId: 562]
Probab=91.85 E-value=2.8 Score=35.22 Aligned_cols=149 Identities=17% Similarity=0.184 Sum_probs=82.0
Q ss_pred CCCCcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHh-cCCCcEEEE
Q 020423 122 PEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAA-NTNVPVSVK 200 (326)
Q Consensus 122 ~~~~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~-~~~~pv~vK 200 (326)
....|+++...+.+.++-.+.++.++++|+|++-+.. |... . ...+-+.+-..++.+ ..+.|+.+-
T Consensus 69 ~~~~pvi~gv~~~s~~~~i~~a~~a~~~Gad~~~v~~--p~~~-~----------~~~~~~~~~~~~~~~~~~~~~ii~y 135 (295)
T d1hl2a_ 69 KGKIKLIAHVGCVSTAESQQLAASAKRYGFDAVSAVT--PFYY-P----------FSFEEHCDHYRAIIDSADGLPMVVY 135 (295)
T ss_dssp TTTSEEEEECCCSSHHHHHHHHHHHHHHTCSEEEEEC--CCSS-C----------CCHHHHHHHHHHHHHHHTTSCEEEE
T ss_pred ccccceeeccccchhhHHHHHHHHHHhcCCceeeeee--cccc-C----------CChHHHHHHHHHHhcccCcCccccc
Confidence 3456899999999999999999999999999999863 3211 1 112223333333323 346677764
Q ss_pred ecc---CCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCC
Q 020423 201 CRI---GVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGIN 277 (326)
Q Consensus 201 ~r~---g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~ 277 (326)
-.+ +..- +.+ + +.++.+.-.+..+-.++. +...+.+..+..+++-|+ .|+
T Consensus 136 ~~P~~~g~~l--~~~-~---l~~L~~~pnvvgiK~~~~------------------~~~~~~~~~~~~~~~~v~-~g~-- 188 (295)
T d1hl2a_ 136 NIPARSGVKL--TLD-Q---INTLVTLPGVGALKQTSG------------------DLYQMEQIRREHPDLVLY-NGY-- 188 (295)
T ss_dssp ECHHHHCCCC--CHH-H---HHHHHTSTTEEEEEECCC------------------CHHHHHHHHHHCTTCEEE-ECC--
T ss_pred cccccccccc--ccc-c---ccccccCcchhhhccccc------------------cHHHHHHHhhcCCCceEe-ccc--
Confidence 322 2211 222 2 233333234444432221 123344455555565544 443
Q ss_pred CHHHHHHHHHhCCChhhhhHHHHhCCchhHHhHHH
Q 020423 278 TVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDT 312 (326)
Q Consensus 278 s~~da~~~l~~GaD~V~iGRall~dP~l~~~~i~~ 312 (326)
.+.+...+..|+++++.|.+-+. |+.+.+..+.
T Consensus 189 -~~~~~~~~~~G~~G~is~~~n~~-p~~~~~i~~~ 221 (295)
T d1hl2a_ 189 -DEIFASGLLAGADGGIGSTYNIM-GWRYQGIVKA 221 (295)
T ss_dssp -GGGHHHHHHHTCCEEEETTHHHH-HHHHHHHHHH
T ss_pred -HHHHhhhhccCCCceeccchhcc-chhhHHHHHh
Confidence 12345677789999998876432 5544444443
|
| >d1rvga_ c.1.10.2 (A:) Fructose-bisphosphate aldolase (FBP aldolase) {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class II FBP aldolase domain: Fructose-bisphosphate aldolase (FBP aldolase) species: Thermus aquaticus [TaxId: 271]
Probab=91.82 E-value=1.5 Score=37.74 Aligned_cols=136 Identities=9% Similarity=0.080 Sum_probs=84.8
Q ss_pred HHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEecc--CCCCC----------cc
Q 020423 143 TELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRI--GVDDH----------DS 210 (326)
Q Consensus 143 A~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~--g~~~~----------~~ 210 (326)
.+++.++||+-|-+-.+. -+++.+.+...++++..+. .+++|-.-+-. |.++. .+
T Consensus 88 i~~ai~~GftSVMiDgS~------------l~~eeNi~~Tk~vv~~Ah~-~gv~VEaElG~igg~Ed~~~~~~~~~~~T~ 154 (305)
T d1rvga_ 88 VLRALRAGFTSVMIDKSH------------EDFETNVRETRRVVEAAHA-VGVTVEAELGRLAGIEEHVAVDEKDALLTN 154 (305)
T ss_dssp HHHHHHTTCSEEEECCTT------------SCHHHHHHHHHHHHHHHHH-TTCEEEEEESCCCCSCC------CCTTCCC
T ss_pred hHHHHhcCCceEEEcCcc------------ccHHHHHHHHHHHHHHhch-hceeEEeeeeeeecccccccccccccccCC
Confidence 445556777777775421 1233567788888877654 35665554432 22111 13
Q ss_pred HHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCC--------------
Q 020423 211 YNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI-------------- 276 (326)
Q Consensus 211 ~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI-------------- 276 (326)
+++..+ ..++.|+|++-++-++.. +-+.+ ...+.++++.++++.+.. ++|++.-||=
T Consensus 155 peea~~----Fv~~TgvD~LAvaiGn~H-G~Yk~---~~~~~l~~~~l~~I~~~~-~~PLVlHGgS~vp~~~~~~~~~~g 225 (305)
T d1rvga_ 155 PEEARI----FMERTGADYLAVAIGTSH-GAYKG---KGRPFIDHARLERIARLV-PAPLVLHGASAVPPELVERFRASG 225 (305)
T ss_dssp HHHHHH----HHHHHCCSEEEECSSCCS-SSBCS---SSSCCCCHHHHHHHHHHC-CSCEEECSCCCCCHHHHHHHHHTT
T ss_pred HHHHHH----HHHHhCccHhhhhhhhhh-cccCC---CCcccchHHHHHHHHhcc-CCCeeccCCccccHHHHhhhcccC
Confidence 455444 345689999999866541 11111 111336789998888764 8999998864
Q ss_pred --------CCHHHHHHHHHhCCChhhhhHHHH
Q 020423 277 --------NTVDEVNAALRKGAHHVMVGRAAY 300 (326)
Q Consensus 277 --------~s~~da~~~l~~GaD~V~iGRall 300 (326)
.+.+++.++++.|+.=|-+++.+.
T Consensus 226 ~~lhg~sG~~~e~i~~ai~~GV~KiNi~T~l~ 257 (305)
T d1rvga_ 226 GEIGEAAGIHPEDIKKAISLGIAKINTDTDLR 257 (305)
T ss_dssp CCCCSCBCCCHHHHHHHHHTTEEEEEECHHHH
T ss_pred cccCCCCCCCHHHHHHHHHcCeEEEEeChHHH
Confidence 246889999999988888887664
|
| >d1pkla2 c.1.12.1 (A:1-87,A:187-357) Pyruvate kinase, N-terminal domain {Leishmania mexicana [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Pyruvate kinase domain: Pyruvate kinase, N-terminal domain species: Leishmania mexicana [TaxId: 5665]
Probab=91.53 E-value=0.46 Score=40.14 Aligned_cols=140 Identities=12% Similarity=0.066 Sum_probs=81.0
Q ss_pred CcEEEEecC--CCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHH---hcCCCcEEE
Q 020423 125 HPIVLQIGG--SNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA---ANTNVPVSV 199 (326)
Q Consensus 125 ~piivQL~g--~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr---~~~~~pv~v 199 (326)
.++++-|+- .+++ ..+.+.++|.|.+-||+++-. .+...++++.|| +..+.++.+
T Consensus 21 TKIIaTiGPas~~~~----~l~~li~aGvdv~RiN~SHg~----------------~e~~~~~i~~iR~~~~~~g~~v~i 80 (258)
T d1pkla2 21 ARIICTIGPSTQSVE----ALKGLIQSGMSVARMNFSHGS----------------HEYHQTTINNVRQAAAELGVNIAI 80 (258)
T ss_dssp SEEEEECCGGGCSHH----HHHHHHHHTEEEEEEETTSSC----------------HHHHHHHHHHHHHHHHHTTCCCEE
T ss_pred CcEEEeeCCCcCCHH----HHHHHHHcCCCEEEEECCCCC----------------HHHHHHHHHHHHHHHHHhCCCccc
Confidence 567777742 2233 244456679999999986432 333444444444 456777666
Q ss_pred EeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcC-CCceEEEeCCCCC
Q 020423 200 KCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF-PDLTFTLNGGINT 278 (326)
Q Consensus 200 K~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~-~~iPVIa~GgI~s 278 (326)
-.........+..+..+ +. +..+.|+|++.++=-. .+.+...++++.++. .++.||+ .|.+
T Consensus 81 ~~d~~gp~~~t~kd~~d-i~-~a~~~~vD~ialSFVr--------------s~~Dv~~ir~~l~~~~~~~~iia--KIE~ 142 (258)
T d1pkla2 81 ALDTKGPPAVSAKDRVD-LQ-FGVEQGVDMIFASFIR--------------SAEQVGDVRKALGPKGRDIMIIC--KIEN 142 (258)
T ss_dssp EEECCCCCSSCHHHHHH-HH-HHHHHTCSEEEETTCC--------------SHHHHHHHHHHHCGGGTTSEEEE--EECS
T ss_pred cccccccccccccHHHH-HH-HHHhcCCCeEEEeCCC--------------CHHHHHHHHHHHHHcCCCCceEE--EecC
Confidence 55443222222222222 22 2335799999886211 012244455555432 3566766 7888
Q ss_pred HHHHHHHHH--hCCChhhhhHHHHhC
Q 020423 279 VDEVNAALR--KGAHHVMVGRAAYQN 302 (326)
Q Consensus 279 ~~da~~~l~--~GaD~V~iGRall~d 302 (326)
.+.+..+-+ .-+|+||++|+=|.-
T Consensus 143 ~~al~nldeI~~~sDgImIaRGDLg~ 168 (258)
T d1pkla2 143 HQGVQNIDSIIEESDGIMVARGDLGV 168 (258)
T ss_dssp HHHHHTHHHHHHHSSEEEECHHHHTT
T ss_pred chhhhhhhhHHhhCCeeeEechhhhh
Confidence 887776655 459999999998753
|
| >d1o5ka_ c.1.10.1 (A:) Dihydrodipicolinate synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Dihydrodipicolinate synthase species: Thermotoga maritima [TaxId: 2336]
Probab=91.48 E-value=2.4 Score=35.65 Aligned_cols=126 Identities=11% Similarity=0.085 Sum_probs=75.5
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC--CCcEEEEeccCCCCCccHH
Q 020423 135 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYN 212 (326)
Q Consensus 135 ~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~--~~pv~vK~r~g~~~~~~~~ 212 (326)
+.+.+.+-.+.+.+.|.+||=++.. +++ +-+| ...+ =.++++.+.+.+ ..|+.+.+.. .+.+
T Consensus 20 D~~~~~~~i~~l~~~Gv~Gi~v~Gs--------tGE-~~~L-s~~E-r~~~~~~~~~~~~~~~~vi~gv~~-----~st~ 83 (295)
T d1o5ka_ 20 DLESYERLVRYQLENGVNALIVLGT--------TGE-SPTV-NEDE-REKLVSRTLEIVDGKIPVIVGAGT-----NSTE 83 (295)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEESSG--------GGT-GGGC-CHHH-HHHHHHHHHHHHTTSSCEEEECCC-----SCHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEECee--------ccc-hhhC-CHHH-HHHHhhhhccccccCCceEeeccc-----ccHH
Confidence 6788999999999999999998642 122 2111 2122 233444444433 4788876443 2344
Q ss_pred HHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEE------eCCCCCHHHHHHHH
Q 020423 213 QLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTL------NGGINTVDEVNAAL 286 (326)
Q Consensus 213 e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa------~GgI~s~~da~~~l 286 (326)
+.++ .++..++.|+|.+.+..... ...+. ..-++++.++.+. +++||+. +|.-.+++.+.++.
T Consensus 84 ~ai~-~a~~A~~~Gad~v~v~pP~y--~~~s~-------~~i~~~~~~ia~a-~~~pi~iYn~P~~~g~~~~~~~~~~l~ 152 (295)
T d1o5ka_ 84 KTLK-LVKQAEKLGANGVLVVTPYY--NKPTQ-------EGLYQHYKYISER-TDLGIVVYNVPGRTGVNVLPETAARIA 152 (295)
T ss_dssp HHHH-HHHHHHHHTCSEEEEECCCS--SCCCH-------HHHHHHHHHHHTT-CSSCEEEEECHHHHSCCCCHHHHHHHH
T ss_pred HHHH-HHHHHHHcCCCEEEEeCCCC--CCCCH-------HHHHHHHHHHHhc-cCCCeeEEeccchhcccchhHHHHHHH
Confidence 5555 45667889999999875421 11110 1124555666554 5888766 36667888888776
Q ss_pred H
Q 020423 287 R 287 (326)
Q Consensus 287 ~ 287 (326)
+
T Consensus 153 ~ 153 (295)
T d1o5ka_ 153 A 153 (295)
T ss_dssp H
T ss_pred h
Confidence 5
|
| >d1krwa_ c.23.1.1 (A:) NTRC receiver domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: NTRC receiver domain species: Salmonella typhimurium [TaxId: 90371]
Probab=91.47 E-value=0.98 Score=33.07 Aligned_cols=58 Identities=14% Similarity=0.204 Sum_probs=43.7
Q ss_pred hhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCCh
Q 020423 222 SSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHH 292 (326)
Q Consensus 222 le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~ 292 (326)
+++...|.|.+.-..+ +.. .++.+.++++..+++|||...+..+.+++.++++.||+.
T Consensus 43 l~~~~~dlii~D~~mp---~~~----------G~el~~~l~~~~~~~piI~~t~~~~~~~~~~a~~~Ga~d 100 (123)
T d1krwa_ 43 LASKTPDVLLSDIRMP---GMD----------GLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFD 100 (123)
T ss_dssp HTTCCCSEEEECCSSS---SST----------THHHHHHHHHHSSSCCEEESCCCSCHHHHHHHHHHTEEE
T ss_pred HHhCCCCEEEehhhcC---Cch----------HHHHHHHHHHhCCCCeEEEEecCCCHHHHHHHHHcCCCe
Confidence 3455677777653322 211 277888888777899999999999999999999999765
|
| >d1v5xa_ c.1.2.4 (A:) N-(5'phosphoribosyl)antranilate isomerase, PRAI {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: N-(5'phosphoribosyl)antranilate isomerase, PRAI species: Thermus thermophilus [TaxId: 274]
Probab=91.46 E-value=2.7 Score=33.46 Aligned_cols=170 Identities=11% Similarity=0.071 Sum_probs=86.9
Q ss_pred CCCChHHHHHHHHHcCCCcEEEecceeeccccccccchhhhhhc-CCCCCcEEEEecCC-CHHHHHHHHHHHHHCCCCEE
Q 020423 77 MDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAF-SPEQHPIVLQIGGS-NLDNLAKATELANAYNYDEI 154 (326)
Q Consensus 77 ~~~s~~~~r~~~~~~Gg~gli~te~~~~~~~~~~~~~~~~~~~~-~~~~~piivQL~g~-~~~~f~~aA~~a~~aG~d~I 154 (326)
+|.|+.+=..++.+.| ++++..=+....+..-..+....+.+. .+.-.++ =++.+ +.+ ...+.+.++++|.|
T Consensus 6 CGit~~ed~~~~~~~g-ad~iGfif~~~SpR~vs~~~a~~i~~~~~~~~~~V--~Vf~~~~~~---~i~~~~~~~~~d~v 79 (200)
T d1v5xa_ 6 CGITRLEDALLAEALG-AFALGFVLAPGSRRRIAPEAARAIGEALGPFVVRV--GVFRDQPPE---EVLRLMEEARLQVA 79 (200)
T ss_dssp CCCCCHHHHHHHHHHT-CSEEEEECCTTCTTBCCHHHHHHHHHHSCSSSEEE--EEESSCCHH---HHHHHHHHTTCSEE
T ss_pred cCCCcHHHHHHHHhCC-CCEEEEEcCCCCCCCcCHHHHHHHHHhhcCceeee--eeeeechhh---hhhhhhcccccccc
Confidence 6778777777777666 554432221111211112222333322 2222222 23333 333 34456788999999
Q ss_pred EecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEec
Q 020423 155 NLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHS 234 (326)
Q Consensus 155 ein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~ 234 (326)
.+|.. ..++++ +.+++ ..++...++...+...+ ..+..+|++.+.+
T Consensus 80 QlHg~-----------------e~~~~~----~~l~~--~~~iik~~~~~~~~~~~-----------~~~~~~~~~L~D~ 125 (200)
T d1v5xa_ 80 QLHGE-----------------EPPEWA----EAVGR--FYPVIKAFPLEGPARPE-----------WADYPAQALLLDG 125 (200)
T ss_dssp EECSC-----------------CCHHHH----HHHTT--TSCEEEEEECSSSCCGG-----------GGGSSCSEEEEEC
T ss_pred ccccc-----------------CCHHHH----HHHhh--ccccceeeccCchhhHH-----------Hhhcchhheeecc
Confidence 99952 123333 33333 35665555553222111 1245688888775
Q ss_pred CCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHH
Q 020423 235 RKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAA 299 (326)
Q Consensus 235 ~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRal 299 (326)
.... .|. + .+|.+....... ..|++.+||| +++.+.+++..+..+|=+.+++
T Consensus 126 ~~~g-~g~-~--------~~~~~~~~~~~~--~~~~~LAGGl-~~~Nv~~~~~~~p~gvDvsSGv 177 (200)
T d1v5xa_ 126 KRPG-SGE-A--------YPRAWAKPLLAT--GRRVILAGGI-APENLEEVLALRPYALDLASGV 177 (200)
T ss_dssp SSTT-SCC-C--------CCGGGGHHHHHT--TSCEEECSSC-CSTTHHHHHHHCCSEEEESGGG
T ss_pred cccC-ccc-c--------cchHHHhhhhhc--cCceEecCCC-CHHHHHHHHhcCCCEEEEcCce
Confidence 4321 111 1 112222222222 5699999999 5777888888777666666555
|
| >d1y0ea_ c.1.2.5 (A:) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: NanE-like domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE species: Staphylococcus aureus [TaxId: 1280]
Probab=91.45 E-value=0.32 Score=39.25 Aligned_cols=121 Identities=16% Similarity=0.077 Sum_probs=71.9
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCC-----Cc
Q 020423 135 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDD-----HD 209 (326)
Q Consensus 135 ~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~-----~~ 209 (326)
+++..++.|+.+.+.|+.++.++. . +.++.+|+..+.|+.........+ ..
T Consensus 21 ~~~~~a~~A~aa~~~Ga~~i~~~~--------------------~----~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (222)
T d1y0ea_ 21 SSFIMSKMALAAYEGGAVGIRANT--------------------K----EDILAIKETVDLPVIGIVKRDYDHSDVFITA 76 (222)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEES--------------------H----HHHHHHHHHCCSCEEEECBCCCTTCCCCBSC
T ss_pred CcHHHHHHHHHHHHCCCeEEecCC--------------------H----HHHHHHHHhcCCccceeeccCCcchHHhhcc
Confidence 567778888888889988887741 1 234566777777765433322111 11
Q ss_pred cHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhC
Q 020423 210 SYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKG 289 (326)
Q Consensus 210 ~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~G 289 (326)
..++ ... ..++|+|.+.+........ .....+.+....+.... ++..+++.+.+++.++.+.|
T Consensus 77 ~~~~----~~~-~~~agad~v~~~~~~~~~~----------~~~~~~~~~~~~~~~~~--~~v~~~~~t~~~a~~~~~~g 139 (222)
T d1y0ea_ 77 TSKE----VDE-LIESQCEVIALDATLQQRP----------KETLDELVSYIRTHAPN--VEIMADIATVEEAKNAARLG 139 (222)
T ss_dssp SHHH----HHH-HHHHTCSEEEEECSCSCCS----------SSCHHHHHHHHHHHCTT--SEEEEECSSHHHHHHHHHTT
T ss_pred cHHH----HHh-HHHcCCCEEEeeccccccc----------cchHHHHHHHHHHhCCc--eEEeecCCCHHHHHHHHHcC
Confidence 2222 122 2357999998875432100 01124445445444333 34566688999999999999
Q ss_pred CChhhhh
Q 020423 290 AHHVMVG 296 (326)
Q Consensus 290 aD~V~iG 296 (326)
+|++.++
T Consensus 140 ~d~i~~~ 146 (222)
T d1y0ea_ 140 FDYIGTT 146 (222)
T ss_dssp CSEEECT
T ss_pred CCeEEEe
Confidence 9998653
|
| >d1ykwa1 c.1.14.1 (A:146-428) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: RuBisCo, C-terminal domain family: RuBisCo, large subunit, C-terminal domain domain: Ribulose 1,5-bisphosphate carboxylase-oxygenase species: Chlorobium tepidum [TaxId: 1097]
Probab=91.32 E-value=1.2 Score=37.97 Aligned_cols=142 Identities=16% Similarity=0.105 Sum_probs=90.2
Q ss_pred CCCcEEEEec----CCCHHHHHHHHHHHHHCCCCEEEe--cCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCc
Q 020423 123 EQHPIVLQIG----GSNLDNLAKATELANAYNYDEINL--NCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVP 196 (326)
Q Consensus 123 ~~~piivQL~----g~~~~~f~~aA~~a~~aG~d~Iei--n~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~p 196 (326)
.++|++..+. |-++++|++.+..+...|.|.|-= +++.+. -..++.|.+.+.+.++...+++|..
T Consensus 17 ~~RPL~~tiiKPk~GLsp~~~a~~~~~~~~GG~D~IKDDE~l~~~~---------~~p~~eRv~~~~~a~~~a~~~TG~~ 87 (283)
T d1ykwa1 17 HGRPIFFGVVKPNIGLSPGEFAEIAYQSWLGGLDIAKDDEMLADVT---------WSSIEERAAHLGKARRKAEAETGEP 87 (283)
T ss_dssp CSSCEEEEECSSCSSCCHHHHHHHHHHHHHTTCSEEECCTTCSSBT---------TBCHHHHHHHHHHHHHHHHHHHSSC
T ss_pred CCCceEEeecCCCCCCCHHHHHHHHHHHHhCCCceecCCccCCCCC---------CccHHHHHHHHHHHHHHHHHHhCCe
Confidence 5789998886 668999999999999999999864 222211 1234467777788888777777766
Q ss_pred EEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeC--
Q 020423 197 VSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNG-- 274 (326)
Q Consensus 197 v~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~G-- 274 (326)
...-..+. .+.+ ++.+. ++.+.+.|.+.+.|..... .|..+..+++. .++||.+=.
T Consensus 88 ~lya~NiT-~~~~---em~~r-a~~~~~~G~~~~mv~~~~~----------------G~~a~~~l~~~-~~lpi~~H~a~ 145 (283)
T d1ykwa1 88 KIYLANIT-DEVD---SLMEK-HDVAVRNGANALLINALPV----------------GLSAVRMLSNY-TQVPLIGHFPF 145 (283)
T ss_dssp CEEEEECC-CCGG---GHHHH-HHHHHHHTCCEEEEEHHHH----------------CHHHHHHHHHH-CSSCEEEECTT
T ss_pred eEEeeecC-CCHH---HHHHH-HHHHHHhCCCEEEEecccc----------------hHHHHHHHHhh-cCCCeEeeecc
Confidence 55544443 2223 33332 2344567888888764221 15556566554 478888732
Q ss_pred ----------CCCCHHHHHHHHH-hCCChhhhh
Q 020423 275 ----------GINTVDEVNAALR-KGAHHVMVG 296 (326)
Q Consensus 275 ----------gI~s~~da~~~l~-~GaD~V~iG 296 (326)
|| +..-.-++.+ .|||.+.++
T Consensus 146 ~g~~~r~~~~Gi-s~~vl~KL~RLaGaD~ih~~ 177 (283)
T d1ykwa1 146 IASFSRMEKYGI-HSKVMTKLQRLAGLDAVIMP 177 (283)
T ss_dssp THHHHCSTTSEE-CHHHHHHHHHHHTCSEEEEE
T ss_pred ceeeccCcCCCc-cHHHHHHHHHHcCCCceeec
Confidence 34 3434455555 789988876
|
| >d1m5wa_ c.1.24.1 (A:) Pyridoxine 5'-phosphate synthase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Pyridoxine 5'-phosphate synthase family: Pyridoxine 5'-phosphate synthase domain: Pyridoxine 5'-phosphate synthase species: Escherichia coli [TaxId: 562]
Probab=91.31 E-value=0.31 Score=40.74 Aligned_cols=149 Identities=15% Similarity=0.116 Sum_probs=87.8
Q ss_pred HHHHHHHHHHHHCCCCEEEecCC----------------------------------------------CCCCcccCCCC
Q 020423 137 DNLAKATELANAYNYDEINLNCG----------------------------------------------CPSPKVAGHGC 170 (326)
Q Consensus 137 ~~f~~aA~~a~~aG~d~Iein~g----------------------------------------------~P~~~~~r~d~ 170 (326)
.+..++|+.+.++|+|+|.+|.- -|......|-+
T Consensus 24 Pd~~~~a~~~~~~GadgITvH~R~DrRHI~~~Dv~~l~~~~~~~lNlE~a~~~e~i~ia~~~kP~qvtLVPe~r~elTTe 103 (242)
T d1m5wa_ 24 PDPVQAAFIAEQAGADGITVHLREDRRHITDRDVRILRQTLDTRMNLEMAVTEEMLAIAVETKPHFCCLVPEKRQEVTTE 103 (242)
T ss_dssp SCHHHHHHHHHTTTCSEEEEECCTTCSSSCHHHHHHHHHHCSSEEEEEECSSHHHHHHHHHHCCSEEEECCCCSSCSSCC
T ss_pred CCHHHHHHHHHHcCCCeEEeCCCCCccccchHHHHHHHHHhhcccccccccchhHHHHHHHhccceEEEeecCccccCcC
Confidence 34678888999999999998742 13333333444
Q ss_pred ccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCC
Q 020423 171 FGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 250 (326)
Q Consensus 171 yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~ 250 (326)
-|=++..+.+++.++++.+++. ++.+++-+-+. .+++ + ...+.|+|.|.+|.+.... ......
T Consensus 104 gGld~~~~~~~L~~~i~~l~~~-girvSLFiDpd------~~~i-~----~a~~lGad~IElhTG~Ya~-a~~~~~---- 166 (242)
T d1m5wa_ 104 GGLDVAGQRDKMRDACKRLADA-GIQVSLFIDAD------EEQI-K----AAAEVGAPFIEIHTGCYAD-AKTDAE---- 166 (242)
T ss_dssp SCCCSGGGHHHHHHHHHHHHHT-TCEEEEEECSC------HHHH-H----HHHHTTCSEEEEECHHHHH-CCSHHH----
T ss_pred CceeehhhHHHHHHHHHHHHhc-CCeEEEEeccc------hhhH-H----HHhhcCcceeeeecccccc-cccchh----
Confidence 3767888889999999999765 67777765442 2221 2 2346899999999764210 000000
Q ss_pred CCccHHHHH---HHHhcCCCceEEEeCCCCCHHHHHHHHH-hCCChhhhhHHHHhCCc
Q 020423 251 PPLKYEYYY---ALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQNPW 304 (326)
Q Consensus 251 ~~~~~~~i~---~i~~~~~~iPVIa~GgI~s~~da~~~l~-~GaD~V~iGRall~dP~ 304 (326)
...-++.+. +...+ ..+-|=+.=|+ +.+.+..+.+ .+.+=|.||-+++.+--
T Consensus 167 ~~~el~~i~~aa~~A~~-lGL~VnAGHgL-n~~Nl~~i~~ip~i~EvsIGHaiI~eal 222 (242)
T d1m5wa_ 167 QAQELARIAKAATFAAS-LGLKVNAGHGL-TYHNVKAIAAIPEMHELNIGHAIIGRAV 222 (242)
T ss_dssp HHHHHHHHHHHHHHHHH-TTCEEEEESSC-CTTTHHHHHTCTTEEEEEECHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHh-cCCcccCCCCc-CccchHHHhcCCCCeEEeccHHHHHHHH
Confidence 000012222 22223 25666665565 4555555544 45788888888876643
|
| >d2p10a1 c.1.12.9 (A:8-204) Uncharacterized protein Mll9387 {Mesorhizobium loti [TaxId: 381]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Mll9387-like domain: Uncharacterized protein Mll9387 species: Mesorhizobium loti [TaxId: 381]
Probab=91.31 E-value=0.2 Score=40.70 Aligned_cols=159 Identities=14% Similarity=0.085 Sum_probs=84.5
Q ss_pred hhhcCCCCCcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCC-------CCCCcccCCCCccccccCCHHHHHHHHHHH
Q 020423 117 FLAFSPEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCG-------CPSPKVAGHGCFGVSLMLDPKFVGEAMSVI 189 (326)
Q Consensus 117 ~~~~~~~~~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g-------~P~~~~~r~d~yGgsl~~r~~~l~eiv~av 189 (326)
+.+.++.+.|+++-=. .+ .-.|+.++++|||.+-+..+ -|... ... .|| +-.+.+.+..+.+
T Consensus 12 lr~~l~~~~~l~~~g~-~d----~lsAklae~aGfdai~~~~~g~~~s~g~~~~~-g~l-~~~----d~~~~~~~~a~~i 80 (197)
T d2p10a1 12 FQKKIRAGEPIIGGGA-GT----GLSAKSEEAGDIDLIVIYNSGRYRMAGRGSLA-GLL-AYG----NANQIVVDMAREV 80 (197)
T ss_dssp HHHHHHTTCCEEEEEE-SS----HHHHHHHHHTTCSEEEECHHHHHHHTTCCGGG-GGB-TEE----EHHHHHHHHHHHH
T ss_pred HHHHHhCCCCEEEccc-cc----HHHHHHHHHcCCCEEEEecHHHHHHcCCcccc-ccc-Chh----HHHHHHHHHHHHH
Confidence 3333445555543322 22 34678899999999987432 22210 000 122 2123445555666
Q ss_pred HhcC-CCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCc--CCcCCCC-CccHHHHHHHHhcC
Q 020423 190 AANT-NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISP--AENRTIP-PLKYEYYYALLRDF 265 (326)
Q Consensus 190 r~~~-~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~--~~~~~~~-~~~~~~i~~i~~~~ 265 (326)
...+ ++||++-+- |+.+..++..++ +.++++|+..|++........|... .+..... ....+.+...+.+
T Consensus 81 ~~~v~~iPviaD~d-G~g~~~nv~rtv----~~~~~aG~agI~~~pk~g~~~g~~~~~~e~a~~~~~~~~d~liiARtd- 154 (197)
T d2p10a1 81 LPVVRHTPVLAGVN-GTDPFMVMSTFL----RELKEIGFAGVQNFPTVGLIDGLFRQNLEETGMSYAQEVEMIAEAHKL- 154 (197)
T ss_dssp GGGCSSSCEEEEEC-TTCTTCCHHHHH----HHHHHHTCCEEEECSCGGGCCHHHHHHHHHTTCCHHHHHHHHHHHHHT-
T ss_pred HHhcccCceEEecC-CCCcchhHHHHH----HHHHHcCCeEEeccccccCccchhhhhHHHHHHHhccCccHHHHHHHh-
Confidence 5544 799999987 776666665543 3457799999987543221111000 0000000 0001222222222
Q ss_pred CCceEEEeCCCCCHHHHHHHHHhCCChhhh
Q 020423 266 PDLTFTLNGGINTVDEVNAALRKGAHHVMV 295 (326)
Q Consensus 266 ~~iPVIa~GgI~s~~da~~~l~~GaD~V~i 295 (326)
.+. ..|--...+.+..+.+.|||.|.+
T Consensus 155 -a~~--~~g~~~Ai~Ra~ay~eAGAD~i~~ 181 (197)
T d2p10a1 155 -DLL--TTPYVFSPEDAVAMAKAGADILVC 181 (197)
T ss_dssp -TCE--ECCEECSHHHHHHHHHHTCSEEEE
T ss_pred -hhh--hccHHHHHHHHHHHHHcCCCEEEE
Confidence 222 245567889999999999999875
|
| >d1gtea2 c.1.4.1 (A:533-844) Dihydropyrimidine dehydrogenase, domain 4 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydropyrimidine dehydrogenase, domain 4 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=90.68 E-value=3.6 Score=34.92 Aligned_cols=112 Identities=10% Similarity=0.034 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHhcC-CCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcC-CCCCccH-
Q 020423 179 PKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENR-TIPPLKY- 255 (326)
Q Consensus 179 ~~~l~eiv~avr~~~-~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~-~~~~~~~- 255 (326)
.+...+.+..+++.. +.++.+....+.+ .++..+ .++.+++.|+|+|.++-.-+...+..+.... ...+..+
T Consensus 86 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~----~~d~~~-~a~~~~~~gad~lelN~scPn~~~~~~~~~~~~~~~~~~~ 160 (312)
T d1gtea2 86 AAYWCQSVTELKADFPDNIVIASIMCSYN----KNDWME-LSRKAEASGADALELNLSCPHGMGERGMGLACGQDPELVR 160 (312)
T ss_dssp HHHHHHHHHHHHHHCTTSEEEEEECCCSC----HHHHHH-HHHHHHHTTCSEEEEECCCBCCCC-----SBGGGCHHHHH
T ss_pred hhhhhhhhccccccccccccccccccccc----hhHHHH-HHHHhccCCCCeEeeccCCCCcccccccchhhhhhHHHHH
Confidence 355556666666655 4455555555422 234444 3445677999999997432211110000000 0011112
Q ss_pred HHHHHHHhcCCCceEEE--eCCCCCHHHHHHHH-HhCCChhhhh
Q 020423 256 EYYYALLRDFPDLTFTL--NGGINTVDEVNAAL-RKGAHHVMVG 296 (326)
Q Consensus 256 ~~i~~i~~~~~~iPVIa--~GgI~s~~da~~~l-~~GaD~V~iG 296 (326)
+.+..++ +.+++||+. ..++.+..++.+.+ +.|+|++.+.
T Consensus 161 ~i~~~v~-~~~~~pv~vKl~~~~~~~~~i~~~~~~~g~~gi~~~ 203 (312)
T d1gtea2 161 NICRWVR-QAVQIPFFAKLTPNVTDIVSIARAAKEGGADGVTAT 203 (312)
T ss_dssp HHHHHHH-HHCSSCEEEEECSCSSCHHHHHHHHHHHTCSEEEEC
T ss_pred HHHHHHh-hccCCceeecccccchhHHHHHHHHHHhcccceEEE
Confidence 2233333 345899885 55667777766655 4899988764
|
| >d1hl2a_ c.1.10.1 (A:) N-acetylneuraminate lyase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: N-acetylneuraminate lyase species: Escherichia coli [TaxId: 562]
Probab=90.67 E-value=1.3 Score=37.40 Aligned_cols=127 Identities=10% Similarity=0.069 Sum_probs=74.3
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC--CCcEEEEeccCCCCCccHH
Q 020423 135 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYN 212 (326)
Q Consensus 135 ~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~--~~pv~vK~r~g~~~~~~~~ 212 (326)
+.+.+.+-.+.+.+.|.++|-++.. ++++ .+ -..+.-.++++.+.+.+ ..|+.+.+.. .+.+
T Consensus 21 D~~~l~~~i~~l~~~Gv~gi~~~G~--------tGE~-~~--Ls~eEr~~l~~~~~~~~~~~~pvi~gv~~-----~s~~ 84 (295)
T d1hl2a_ 21 DKASLRRLVQFNIQQGIDGLYVGGS--------TGEA-FV--QSLSEREQVLEIVAEEAKGKIKLIAHVGC-----VSTA 84 (295)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEESSG--------GGTG-GG--SCHHHHHHHHHHHHHHHTTTSEEEEECCC-----SSHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEECeE--------ccch-hh--CCHHHHHHHHhhhHHhhccccceeecccc-----chhh
Confidence 6788999999999999999999752 1221 11 12233344455444443 4677775433 2345
Q ss_pred HHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEE------eCCCCCHHHHHHHH
Q 020423 213 QLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTL------NGGINTVDEVNAAL 286 (326)
Q Consensus 213 e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa------~GgI~s~~da~~~l 286 (326)
+.++ .++..++.|+|.+.+...... ..+ ...-.+.+.++.+..+++|++. .|--.+++.+.++.
T Consensus 85 ~~i~-~a~~a~~~Gad~~~v~~p~~~--~~~-------~~~~~~~~~~~~~~~~~~~ii~y~~P~~~g~~l~~~~l~~L~ 154 (295)
T d1hl2a_ 85 ESQQ-LAASAKRYGFDAVSAVTPFYY--PFS-------FEEHCDHYRAIIDSADGLPMVVYNIPARSGVKLTLDQINTLV 154 (295)
T ss_dssp HHHH-HHHHHHHHTCSEEEEECCCSS--CCC-------HHHHHHHHHHHHHHHTTSCEEEEECHHHHCCCCCHHHHHHHH
T ss_pred HHHH-HHHHHHhcCCceeeeeecccc--CCC-------hHHHHHHHHHHhcccCcCcccccccccccccccccccccccc
Confidence 5555 456677899999998754321 000 0111344555565555777764 34455777777665
Q ss_pred H
Q 020423 287 R 287 (326)
Q Consensus 287 ~ 287 (326)
+
T Consensus 155 ~ 155 (295)
T d1hl2a_ 155 T 155 (295)
T ss_dssp T
T ss_pred c
Confidence 4
|
| >d1muma_ c.1.12.7 (A:) 2-methylisocitrate lyase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Phosphoenolpyruvate mutase/Isocitrate lyase-like domain: 2-methylisocitrate lyase species: Escherichia coli [TaxId: 562]
Probab=90.64 E-value=1.5 Score=37.35 Aligned_cols=88 Identities=17% Similarity=0.140 Sum_probs=55.0
Q ss_pred HHHHHHHHCCCCEEEecCCCCC-CcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHH
Q 020423 141 KATELANAYNYDEINLNCGCPS-PKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIY 219 (326)
Q Consensus 141 ~aA~~a~~aG~d~Iein~g~P~-~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia 219 (326)
-.|+.++++||+.+=+...+-. ....-.|. | + -..+.+.+.++.|.+.+++|+++-.-.|+.+. ...+.+. .
T Consensus 27 ~sA~~~e~~Gf~a~~~sg~~~sa~~~G~pD~-~--~-~~~~e~~~~~~~i~~a~~~Pvi~D~d~GyG~~--~~~v~~~-v 99 (289)
T d1muma_ 27 NHALLAQRAGYQAIYLSGGGVAAGSLGLPDL-G--I-STLDDVLTDIRRITDVCSLPLLVDADIGFGSS--AFNVART-V 99 (289)
T ss_dssp HHHHHHHHTTCSCEEECHHHHHHTTSCCCSS-S--C-CCHHHHHHHHHHHHHHCCSCEEEECTTCSSSS--HHHHHHH-H
T ss_pred HHHHHHHHcCCCEEEhhHHHHHHHccCCCCC-C--C-CChHHHHHHHHHHhcccCCCeeeccccccccc--chHHHHH-H
Confidence 4568899999999988422110 00011121 1 1 23566777777787888999999988876542 2223332 3
Q ss_pred HHhhhCCccEEEEecC
Q 020423 220 KVSSLSPTRHFIIHSR 235 (326)
Q Consensus 220 ~~le~~Gvd~I~v~~~ 235 (326)
+.++++|+..+++...
T Consensus 100 ~~~~~aGvagi~iEDq 115 (289)
T d1muma_ 100 KSMIKAGAAGLHIEDQ 115 (289)
T ss_dssp HHHHHHTCSEEEEECB
T ss_pred HHHHHCCCCEEEecCc
Confidence 3556799999999764
|
| >d1ykwa1 c.1.14.1 (A:146-428) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: RuBisCo, C-terminal domain family: RuBisCo, large subunit, C-terminal domain domain: Ribulose 1,5-bisphosphate carboxylase-oxygenase species: Chlorobium tepidum [TaxId: 1097]
Probab=90.18 E-value=1.3 Score=37.65 Aligned_cols=197 Identities=15% Similarity=0.115 Sum_probs=109.8
Q ss_pred ccCCCCChHHHHHHHH--HcCCCcEEEe-cceeeccccccccchhhhhh-------cCCCCCcEEEEecCCCHHHHHHHH
Q 020423 74 APMMDWTDNHYRTLAR--LISKHAWLYT-EMLAAETIIYQQGNLDRFLA-------FSPEQHPIVLQIGGSNLDNLAKAT 143 (326)
Q Consensus 74 APM~~~s~~~~r~~~~--~~Gg~gli~t-e~~~~~~~~~~~~~~~~~~~-------~~~~~~piivQL~g~~~~~f~~aA 143 (326)
=|..|.|..++...+. ..||+++|=- |.+...+...-.+..+...+ -..+..-..+|+. .+++++.+-+
T Consensus 27 KPk~GLsp~~~a~~~~~~~~GG~D~IKDDE~l~~~~~~p~~eRv~~~~~a~~~a~~~TG~~~lya~NiT-~~~~em~~ra 105 (283)
T d1ykwa1 27 KPNIGLSPGEFAEIAYQSWLGGLDIAKDDEMLADVTWSSIEERAAHLGKARRKAEAETGEPKIYLANIT-DEVDSLMEKH 105 (283)
T ss_dssp SSCSSCCHHHHHHHHHHHHHTTCSEEECCTTCSSBTTBCHHHHHHHHHHHHHHHHHHHSSCCEEEEECC-CCGGGHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHhCCCceecCCccCCCCCCccHHHHHHHHHHHHHHHHHHhCCeeEEeeecC-CCHHHHHHHH
Confidence 3667889888887643 5699987643 22222222111111111111 1123345788997 4889999999
Q ss_pred HHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccC------CCCCccHHHHHHH
Q 020423 144 ELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIG------VDDHDSYNQLCDF 217 (326)
Q Consensus 144 ~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g------~~~~~~~~e~~~~ 217 (326)
+.++++|.+++-+|.. . +| ...++.+++..+.|+..--... ....-+.. .
T Consensus 106 ~~~~~~G~~~~mv~~~-----~-----~G----------~~a~~~l~~~~~lpi~~H~a~~g~~~r~~~~Gis~~----v 161 (283)
T d1ykwa1 106 DVAVRNGANALLINAL-----P-----VG----------LSAVRMLSNYTQVPLIGHFPFIASFSRMEKYGIHSK----V 161 (283)
T ss_dssp HHHHHHTCCEEEEEHH-----H-----HC----------HHHHHHHHHHCSSCEEEECTTTHHHHCSTTSEECHH----H
T ss_pred HHHHHhCCCEEEEecc-----c-----ch----------HHHHHHHHhhcCCCeEeeeccceeeccCcCCCccHH----H
Confidence 9999999999998741 1 34 1345556666678887642221 01111111 2
Q ss_pred HHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhc----CCCceEEEeCCCCCHHHHHHHHH-hC-CC
Q 020423 218 IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRD----FPDLTFTLNGGINTVDEVNAALR-KG-AH 291 (326)
Q Consensus 218 ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~----~~~iPVIa~GgI~s~~da~~~l~-~G-aD 291 (326)
+.++..-+|+|.+++.+-. |..... .....+...++.+. .+-+||. +||+ ++..+.+.++ .| .|
T Consensus 162 l~KL~RLaGaD~ih~~~~g----g~~~~~----~e~~~~~~~~~~~~~~~~k~~~Pv~-sGG~-~~~~vp~~~~~~G~~D 231 (283)
T d1ykwa1 162 MTKLQRLAGLDAVIMPGFG----DRVMTP----EEEVLENVIECTKPMGRIKPCLPVP-GGSD-SALTLQTVYEKVGNVD 231 (283)
T ss_dssp HHHHHHHHTCSEEEEECSS----TTSSSC----HHHHHHHHHHHHSCCTTCCCCEEEE-ECSB-CTTTHHHHHHHHCSSC
T ss_pred HHHHHHHcCCCceeecCCc----ccccCc----hHHHHHHHHHhcCcccccCCceeec-cCCc-chhhhHHHHHhcCCce
Confidence 3555566899999986422 211100 00011222222221 1246875 6665 6777777777 78 57
Q ss_pred hhh-hhHHHHhCCch
Q 020423 292 HVM-VGRAAYQNPWY 305 (326)
Q Consensus 292 ~V~-iGRall~dP~l 305 (326)
.+. +|-+++..|+=
T Consensus 232 vil~aGGGi~gHP~G 246 (283)
T d1ykwa1 232 FGFVPGRGVFGHPMG 246 (283)
T ss_dssp SEECBSSSSSSCTTC
T ss_pred EEEecCcccccCCCc
Confidence 764 78888888873
|
| >d1xxxa1 c.1.10.1 (A:5-300) Dihydrodipicolinate synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Dihydrodipicolinate synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=89.97 E-value=3 Score=35.07 Aligned_cols=127 Identities=8% Similarity=-0.014 Sum_probs=73.6
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCc-cccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHH
Q 020423 135 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCF-GVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQ 213 (326)
Q Consensus 135 ~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~y-Ggsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e 213 (326)
+.+.+.+-.+.+.+.|.+|+=++... +++ --+.+.|.+++..+++.+.. ..|+.+.+.. .+.++
T Consensus 26 D~~~l~~~i~~li~~Gv~Gi~v~G~t--------GE~~~Ls~eEr~~l~~~~~~~~~~--~~~vi~g~~~-----~s~~~ 90 (296)
T d1xxxa1 26 DTATAARLANHLVDQGCDGLVVSGTT--------GESPTTTDGEKIELLRAVLEAVGD--RARVIAGAGT-----YDTAH 90 (296)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEESSTT--------TTTTTSCHHHHHHHHHHHHHHHTT--TSEEEEECCC-----SCHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEECeec--------cchhhCCHHHHHHHHHHHHHHhcc--ccceEecccc-----chhHH
Confidence 67889999999999999999886432 221 11222333444444443322 3677665332 23555
Q ss_pred HHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEe------CCCCCHHHHHHHHH
Q 020423 214 LCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLN------GGINTVDEVNAALR 287 (326)
Q Consensus 214 ~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~------GgI~s~~da~~~l~ 287 (326)
.++ .++..++.|+|.+.+...... ..+ ...-.+++.++.+. .++||+.= |-..+++.+.++.+
T Consensus 91 ~i~-~a~~a~~~Gad~v~i~~P~~~--~~~-------~~~l~~~~~~v~~~-~~~pi~lYn~p~~~g~~~~~~~~~~L~~ 159 (296)
T d1xxxa1 91 SIR-LAKACAAEGAHGLLVVTPYYS--KPP-------QRGLQAHFTAVADA-TELPMLLYDIPGRSAVPIEPDTIRALAS 159 (296)
T ss_dssp HHH-HHHHHHHHTCSEEEEECCCSS--CCC-------HHHHHHHHHHHHTT-CSSCEEEEECHHHHSSCCCHHHHHHHHT
T ss_pred HHH-HHHHHHHhcCCeEEEEeccCC--CCC-------HHHHHHHHHHHHHh-cCCCEEEEECccccCCCCCHHHHHHhcC
Confidence 555 456677899999988754211 000 01124556666654 48888762 44457777666643
|
| >d1qkka_ c.23.1.1 (A:) Transcriptional regulatory protein DctD, receiver domain {Sinorhizobium meliloti [TaxId: 382]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Transcriptional regulatory protein DctD, receiver domain species: Sinorhizobium meliloti [TaxId: 382]
Probab=89.82 E-value=1.3 Score=33.17 Aligned_cols=40 Identities=23% Similarity=0.323 Sum_probs=34.8
Q ss_pred HHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhh
Q 020423 255 YEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVM 294 (326)
Q Consensus 255 ~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~ 294 (326)
++.+.++++..+++|||..-+-.+.+++.++++.||+...
T Consensus 60 ~el~~~lr~~~~~~pvI~lT~~~~~~~~~~a~~~Ga~dyl 99 (140)
T d1qkka_ 60 LALFRKILALDPDLPMILVTGHGDIPMAVQAIQDGAYDFI 99 (140)
T ss_dssp HHHHHHHHHHCTTSCEEEEECGGGHHHHHHHHHTTCCEEE
T ss_pred HHHHHHHHHhCCCCcEEEEECCCCHHHHHHHHHcCCCEee
Confidence 7788888877789999999999999999999999987543
|
| >d1jpdx1 c.1.11.2 (X:114-321) L-Ala-D/L-Glu epimerase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: L-Ala-D/L-Glu epimerase species: Escherichia coli [TaxId: 562]
Probab=89.56 E-value=0.53 Score=38.10 Aligned_cols=79 Identities=10% Similarity=0.020 Sum_probs=50.9
Q ss_pred EEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCC-CcEEEEeccCCCC
Q 020423 129 LQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTN-VPVSVKCRIGVDD 207 (326)
Q Consensus 129 vQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~-~pv~vK~r~g~~~ 207 (326)
..+.-.+|+++++.|+.+.+.||..+-|..|-. . -.+.++++|+.++ ..+.+-..-+|+.
T Consensus 10 ~tv~~~tpe~~~~~a~~~~~~G~~~~KiKvg~~---------------~----d~~~i~~ir~~~~d~~l~vDaN~~~s~ 70 (208)
T d1jpdx1 10 QTVVIGTPDQMANSASTLWQAGAKLLKVKLDNH---------------L----ISERMVAIRTAVPDATLIVDANESWRA 70 (208)
T ss_dssp EEECSCCHHHHHHHHHHHHHTTCSEEEEECCSS---------------C----HHHHHHHHHHHCTTSEEEEECTTCCCS
T ss_pred eEcCCCCHHHHHHHHHHHHHCCCCEEEEECCCC---------------c----HHHHHHHHHHhccccEEEEecccccch
Confidence 334445799999999999999999999975410 1 2456777888773 3344433334432
Q ss_pred CccHHHHHHHHHHHhhhCCccEEE
Q 020423 208 HDSYNQLCDFIYKVSSLSPTRHFI 231 (326)
Q Consensus 208 ~~~~~e~~~~ia~~le~~Gvd~I~ 231 (326)
++..+ +.+.+++.++.++.
T Consensus 71 ----~~A~~-~~~~l~~~~l~~iE 89 (208)
T d1jpdx1 71 ----EGLAA-RCQLLADLGVAMLE 89 (208)
T ss_dssp ----TTHHH-HHHHHHHTTCCEEE
T ss_pred ----hHHHH-HHHHHHhccccccC
Confidence 23334 34466788988875
|
| >d1oy0a_ c.1.12.8 (A:) Ketopantoate hydroxymethyltransferase PanB {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Ketopantoate hydroxymethyltransferase PanB domain: Ketopantoate hydroxymethyltransferase PanB species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=89.42 E-value=2.9 Score=35.01 Aligned_cols=118 Identities=6% Similarity=-0.005 Sum_probs=72.4
Q ss_pred CCCcEEEEecCCCHHHHHHHHHHHHHCCCCEEEec-------CCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCC
Q 020423 123 EQHPIVLQIGGSNLDNLAKATELANAYNYDEINLN-------CGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNV 195 (326)
Q Consensus 123 ~~~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein-------~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~ 195 (326)
.+.| +++|...+ ...|+.+.++|.|.|=+- .|..++ +.-..+....-.++|++....
T Consensus 15 ~g~k-i~~lTaYD----~~~A~~~~~agiDiiLVGDSlgmv~~G~~~T-----------~~Vt~d~m~~H~~aV~rga~~ 78 (262)
T d1oy0a_ 15 DGHK-WAMLTAYD----YSTARIFDEAGIPVLLVGDSAANVVYGYDTT-----------VPISIDELIPLVRGVVRGAPH 78 (262)
T ss_dssp HTCC-EEEEECCS----HHHHHHHHTTTCCEEEECTTHHHHTTCCSSS-----------SSCCGGGTHHHHHHHHHHCTT
T ss_pred CCCc-EEEEeCCC----HHHHHHHHHcCCCEEEEcCchhhhhcCCCCc-----------ceeeHHHHHHHHHHHHhcccc
Confidence 3444 56788888 346778889999998773 222221 112344455566777776654
Q ss_pred c-EEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeC
Q 020423 196 P-VSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNG 274 (326)
Q Consensus 196 p-v~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~G 274 (326)
. +.+-+..+... .+.++..+...+++.+.|+|.+.+.++.. ..+.++.+.+. .|||++-=
T Consensus 79 ~~iv~DmPf~s~~-~s~~~a~~nA~r~~~~~ga~avkleg~~~----------------~~~~I~~L~~~--gIPV~gHi 139 (262)
T d1oy0a_ 79 ALVVADLPFGSYE-AGPTAALAAATRFLKDGGAHAVKLEGGER----------------VAEQIACLTAA--GIPVMAHI 139 (262)
T ss_dssp SEEEEECCTTSST-TCHHHHHHHHHHHHHTTCCSEEEEEBSGG----------------GHHHHHHHHHH--TCCEEEEE
T ss_pred ceeEecchhhhcc-cchHHHHHHHHHHHhccccceeeechhhh----------------hHHHHHHHHhc--CCceEEee
Confidence 4 44455554322 23445555556777789999999987532 14566666665 78888753
Q ss_pred C
Q 020423 275 G 275 (326)
Q Consensus 275 g 275 (326)
|
T Consensus 140 G 140 (262)
T d1oy0a_ 140 G 140 (262)
T ss_dssp E
T ss_pred e
Confidence 3
|
| >d2pl1a1 c.23.1.1 (A:1-119) PhoP receiver domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: PhoP receiver domain species: Escherichia coli [TaxId: 562]
Probab=89.35 E-value=2.8 Score=30.23 Aligned_cols=58 Identities=9% Similarity=-0.045 Sum_probs=43.9
Q ss_pred hhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChh
Q 020423 223 SLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHV 293 (326)
Q Consensus 223 e~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V 293 (326)
++...|.+.+.-..+ +.. .++.+.++++..+++|||..-+-.+.++..++++.||+..
T Consensus 41 ~~~~~dliilD~~mP---~~~----------G~e~~~~i~~~~~~~pvi~lt~~~~~~~~~~a~~~Ga~~y 98 (119)
T d2pl1a1 41 NEHIPDIAIVDLGLP---DED----------GLSLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDY 98 (119)
T ss_dssp HHSCCSEEEECSCCS---SSC----------HHHHHHHHHHTTCCSCEEEEESCCCHHHHHHHHHTTCSEE
T ss_pred HhcccceeehhccCC---Cch----------hHHHHHHHHhcCcccceEeeeccCCHHHHHHHHHcCCCEE
Confidence 445678777654322 111 2788888887777899999999999999999999998874
|
| >d1twda_ c.1.30.1 (A:) Copper homeostasis protein CutC {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: CutC-like family: CutC-like domain: Copper homeostasis protein CutC species: Shigella flexneri [TaxId: 623]
Probab=89.04 E-value=3.8 Score=33.95 Aligned_cols=78 Identities=12% Similarity=0.090 Sum_probs=46.8
Q ss_pred HHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCC----CccHHHHHH
Q 020423 141 KATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDD----HDSYNQLCD 216 (326)
Q Consensus 141 ~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~----~~~~~e~~~ 216 (326)
+.|..|++.|+|-|||... .. -|| +.-...+ ++.+++.+++|+-|=+|+-..+ ..+++.+.+
T Consensus 11 ~~a~~A~~~GAdRIELc~~------l~---~GG-lTPS~g~----i~~~~~~~~iPv~vMIRPR~GdF~Ys~~E~~~M~~ 76 (247)
T d1twda_ 11 ECALTAQQNGADRVELCAA------PK---EGG-LTPSLGV----LKSVRQRVTIPVHPIIRPRGGDFCYSDGEFAAILE 76 (247)
T ss_dssp HHHHHHHHTTCSEEEECBC------GG---GTC-BCCCHHH----HHHHHHHCCSCEEEBCCSSSSCSCCCHHHHHHHHH
T ss_pred HHHHHHHHcCCCEEEEcCC------cc---cCC-CCCCHHH----HHHHHHhcCCCeEEEEecCCCCCCCCHHHHHHHHH
Confidence 4567788999999999521 10 122 2222333 4455566789998888864222 123444444
Q ss_pred HHHHHhhhCCccEEEEe
Q 020423 217 FIYKVSSLSPTRHFIIH 233 (326)
Q Consensus 217 ~ia~~le~~Gvd~I~v~ 233 (326)
-+. .+.+.|+|.+++-
T Consensus 77 di~-~~k~~G~dGvV~G 92 (247)
T d1twda_ 77 DVR-TVRELGFPGLVTG 92 (247)
T ss_dssp HHH-HHHHTTCSEEEEC
T ss_pred HHH-HHHHcCCCeEEEE
Confidence 433 4567999999874
|
| >d1o4ua1 c.1.17.1 (A:104-273) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Nicotinate/Quinolinate PRTase C-terminal domain-like family: NadC C-terminal domain-like domain: Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=88.74 E-value=0.2 Score=39.73 Aligned_cols=95 Identities=12% Similarity=0.138 Sum_probs=58.7
Q ss_pred HHHHHHHHHhcCC--CcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHH-HH
Q 020423 182 VGEAMSVIAANTN--VPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYE-YY 258 (326)
Q Consensus 182 l~eiv~avr~~~~--~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~-~i 258 (326)
+.+.++.+++..+ .++.|- .++.++..+ .+ ++|+|.|-+..-+ |.... .+
T Consensus 64 ~~~~~~~~~~~~~~~~~I~VE-------v~~~~e~~~----a~-~~g~d~i~LDn~~---------------pe~~k~~~ 116 (170)
T d1o4ua1 64 AERAVQEVRKIIPFTTKIEVE-------VENLEDALR----AV-EAGADIVMLDNLS---------------PEEVKDIS 116 (170)
T ss_dssp HHHHHHHHHTTSCTTSCEEEE-------ESSHHHHHH----HH-HTTCSEEEEESCC---------------HHHHHHHH
T ss_pred HHHHHHHHHhhCCCCceEEEE-------eCcHHHHHH----HH-hcCccEEEEcCcC---------------hhhHhHHH
Confidence 3456677766543 345443 234544433 22 5899999876422 11122 22
Q ss_pred HHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhCCc
Q 020423 259 YALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW 304 (326)
Q Consensus 259 ~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~dP~ 304 (326)
..+....+++.+-++||| +.+.+.++.++|+|.+.+|.....-|+
T Consensus 117 ~~lk~~~~~i~lEaSGGI-~~~ni~~~a~~GVD~Is~g~lt~~a~~ 161 (170)
T d1o4ua1 117 RRIKDINPNVIVEVSGGI-TEENVSLYDFETVDVISSSRLTLQEVF 161 (170)
T ss_dssp HHHHHHCTTSEEEEEECC-CTTTGGGGCCTTCCEEEEGGGTSSCCC
T ss_pred HHHHhhCCcEEEEEECCC-CHHHHHHHHHcCCCEEEcCccccCCCC
Confidence 333344567899999999 788888888899999999965443333
|
| >d2a6na1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Dihydrodipicolinate synthase species: Escherichia coli [TaxId: 562]
Probab=88.60 E-value=2.9 Score=35.07 Aligned_cols=127 Identities=14% Similarity=0.041 Sum_probs=73.3
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCC-ccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHH
Q 020423 135 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGC-FGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQ 213 (326)
Q Consensus 135 ~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~-yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e 213 (326)
+.+.+.+-++++.+.|.+|+=++... ++ +--+.+.|.+++..+++.+.. ..|+.+.+.. .+.++
T Consensus 20 D~~~~~~~i~~l~~~Gv~Gl~~~Gst--------GE~~~Ls~~Er~~~~~~~~~~~~~--~~~vi~g~~~-----~s~~~ 84 (292)
T d2a6na1 20 CRASLKKLIDYHVASGTSAIVSVGTT--------GESATLNHDEHADVVMMTLDLADG--RIPVIAGTGA-----NATAE 84 (292)
T ss_dssp CHHHHHHHHHHHHHHTCCEEEESSTT--------TTGGGSCHHHHHHHHHHHHHHHTT--SSCEEEECCC-----SSHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEECeec--------cchhhCCHHHHHHHhhhhhhhccc--cceeEeeccc-----chHHH
Confidence 67889999999999999999997532 22 111222333444444444322 4677775333 23445
Q ss_pred HHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEE------eCCCCCHHHHHHHHH
Q 020423 214 LCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTL------NGGINTVDEVNAALR 287 (326)
Q Consensus 214 ~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa------~GgI~s~~da~~~l~ 287 (326)
.++ .++..++.|+|.+.+.... +...+. ..-++++.++.+. .++||+. .|--.+++...++.+
T Consensus 85 ~i~-~~~~a~~~Gad~~~~~pP~--~~~~~~-------~~i~~~f~~v~~~-~~~pi~iYn~P~~~g~~~~~e~~~~L~~ 153 (292)
T d2a6na1 85 AIS-LTQRFNDSGIVGCLTVTPY--YNRPSQ-------EGLYQHFKAIAEH-TDLPQILYNVPSATGCDLLPETVGRLAK 153 (292)
T ss_dssp HHH-HHHTTTTSSCCEEEEECCC--SSCCCH-------HHHHHHHHHHHHT-CSSCEEEEECHHHHSCCCCHHHHHHHHT
T ss_pred HHH-HhccHHhcCCcceeccCCC--CCCCCH-------HHHHHHHHHHhhc-cCCcEEEEEeccccCCccCHHHHHHHhc
Confidence 555 4567788999999887532 111110 1124555666655 4888765 244467776665543
|
| >d1m3ua_ c.1.12.8 (A:) Ketopantoate hydroxymethyltransferase PanB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Ketopantoate hydroxymethyltransferase PanB domain: Ketopantoate hydroxymethyltransferase PanB species: Escherichia coli [TaxId: 562]
Probab=88.47 E-value=2.5 Score=35.46 Aligned_cols=157 Identities=8% Similarity=0.020 Sum_probs=87.0
Q ss_pred CCCChHHHHHHHHHcCCCcEEEecceeeccc-ccccc---chhhhhh----c-C-CCCCcEEEEec-C--CCHHHHHHHH
Q 020423 77 MDWTDNHYRTLARLISKHAWLYTEMLAAETI-IYQQG---NLDRFLA----F-S-PEQHPIVLQIG-G--SNLDNLAKAT 143 (326)
Q Consensus 77 ~~~s~~~~r~~~~~~Gg~gli~te~~~~~~~-~~~~~---~~~~~~~----~-~-~~~~piivQL~-g--~~~~~f~~aA 143 (326)
.+.-|..++.++.+.| ++++.++-....-. .+.+. ..+..+. + . ....-+++-+- + .+.++..+.|
T Consensus 20 lTayD~~~A~~~~~ag-vDiiLVGDSlgmv~~G~~~T~~vt~d~mi~H~~aV~rga~~~~vv~DmPf~sy~~~~~a~~~a 98 (262)
T d1m3ua_ 20 ITAYDYSFAKLFADEG-LNVMLVGDSLGMTVQGHDSTLPVTVADIAYHTAAVRRGAPNCLLLADLPFMAYATPEQAFENA 98 (262)
T ss_dssp EECCSHHHHHHHHHHT-CCEEEECTTHHHHTTCCSSSTTCCHHHHHHHHHHHHHHCTTSEEEEECCTTSSSSHHHHHHHH
T ss_pred EEcCCHHHHHHHHHCC-CCEEEEcCcHHhcccCCCCcceechHhHHHHHHHHHhccccceeEeccccccchhhHHHHHHH
Confidence 4667788887776665 99988774221110 11110 0111110 1 1 12233444441 1 3567777888
Q ss_pred HHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccC---------CC----CCcc
Q 020423 144 ELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIG---------VD----DHDS 210 (326)
Q Consensus 144 ~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g---------~~----~~~~ 210 (326)
.++.++|+|.|-+..+. . ..++++.+.+ .++||.--+.+- +. ..++
T Consensus 99 ~~l~~~GAdaVKlEgg~----------------~----~~~~I~~L~~-~gIPV~gHiGL~PQ~~~~~GG~r~qGkt~~e 157 (262)
T d1m3ua_ 99 ATVMRAGANMVKIEGGE----------------W----LVETVQMLTE-RAVPVCGHLGLTPQSVNIFGGYKVQGRGDEA 157 (262)
T ss_dssp HHHHHTTCSEEECCCSG----------------G----GHHHHHHHHH-TTCCEEEEEESCGGGHHHHTSSCCCCCSHHH
T ss_pred HHHHhcCCcEEEeccch----------------h----HHHHHHHHHH-cCCeEEeehhhchhhhhhcCCccccCccHHH
Confidence 88889999999884320 1 1345555543 388987654331 11 1123
Q ss_pred HHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCC
Q 020423 211 YNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGG 275 (326)
Q Consensus 211 ~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~Gg 275 (326)
..++.+ .++.+|++|+..+.+..-. .+..+++.+. ++||+|+-|.
T Consensus 158 a~~l~~-~a~~le~AGaf~ivlE~vp------------------~~va~~It~~-~~IPtIGIGA 202 (262)
T d1m3ua_ 158 GDQLLS-DALALEAAGAQLLVLECVP------------------VELAKRITEA-LAIPVIGIGA 202 (262)
T ss_dssp HHHHHH-HHHHHHHHTCCEEEEESCC------------------HHHHHHHHHH-CSSCEEEESS
T ss_pred HHHHHH-HHHHHHhhcceEEEEeccc------------------HHHHHHHHhh-hcceeEeecc
Confidence 334444 3567899999999886421 3444455555 5999998763
|
| >d1piia1 c.1.2.4 (A:255-452) N-(5'phosphoribosyl)antranilate isomerase, PRAI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: N-(5'phosphoribosyl)antranilate isomerase, PRAI species: Escherichia coli [TaxId: 562]
Probab=88.46 E-value=0.54 Score=37.93 Aligned_cols=134 Identities=12% Similarity=0.073 Sum_probs=76.6
Q ss_pred HHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHHH
Q 020423 141 KATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYK 220 (326)
Q Consensus 141 ~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia~ 220 (326)
+-++.+.++|+|.+-+.+. |.+ .| | -.++.+.++++.++ -.+|.| -.. .+.+++ .+
T Consensus 12 ~d~~~~~~~gaD~iGfif~-~~S--pR---~-----Vs~~~a~~i~~~~~---~~~V~V--fv~----~~~~~i----~~ 67 (198)
T d1piia1 12 QDAKAAYDAGAIYGGLIFV-ATS--PR---C-----VNVEQAQEVMAAAP---LQYVGV--FRN----HDIADV----VD 67 (198)
T ss_dssp HHHHHHHHHTCSEEEEECC-TTC--TT---B-----CCHHHHHHHHHHCC---CEEEEE--ESS----CCHHHH----HH
T ss_pred HHHHHHHhCCCCEEEEEcc-CCC--CC---C-----cCHHHHHHhhhhcc---ccccee--eec----cchhhH----HH
Confidence 3455667789999999883 322 22 1 24777777766542 112222 221 233333 33
Q ss_pred HhhhCCccEEEEecCCcc---------c-C-----------C------CCc--------CCcCCCCCccHHHHHHHHhcC
Q 020423 221 VSSLSPTRHFIIHSRKAL---------L-N-----------G------ISP--------AENRTIPPLKYEYYYALLRDF 265 (326)
Q Consensus 221 ~le~~Gvd~I~v~~~~~~---------~-~-----------g------~~~--------~~~~~~~~~~~~~i~~i~~~~ 265 (326)
.++..++|++.+||.... . . . ... .....-...+|+.+ +..
T Consensus 68 ~~~~~~~d~iQlHG~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~lld~~~gGtG~~fdw~~~----~~~ 143 (198)
T d1piia1 68 KAKVLSLAAVQLHGNEEQLYIDTLREALPAHVAIWKALSVGETLPAREFQHVDKYVLDNGQGGSGQRFDWSLL----NGQ 143 (198)
T ss_dssp HHHHHTCSEEEECSCCCHHHHHHHHHHSCTTSEEEEEEECSSSCCCCCCTTCCEEEEESCSCCSSCCCCGGGG----TTS
T ss_pred hhhcccccceeecCCccHHHHHHHhccccccccceeccchhhhhhHHHhhhhcccccCCcccccceeeehhhh----ccc
Confidence 445678999999986420 0 0 0 000 00001112346543 233
Q ss_pred CCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhCC
Q 020423 266 PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNP 303 (326)
Q Consensus 266 ~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~dP 303 (326)
...|++.+||| +++.+.++++.+..+|=+.+++=.+|
T Consensus 144 ~~~~~~LAGGl-~~~Nv~~a~~~~p~gvDvsSGvE~~p 180 (198)
T d1piia1 144 SLGNVLLAGGL-GADNCVEAAQTGCAGLDFNSAVESQP 180 (198)
T ss_dssp CCTTEEEESSC-CTTTHHHHHTTCCSEEEECGGGEEET
T ss_pred ccceeEEecCC-CHHHHHHHHhcCCCEEEeCCcccCCC
Confidence 45789999999 89999999888888887777765554
|
| >d1wdda1 c.1.14.1 (A:151-475) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Rice (Oryza sativa) [TaxId: 4530]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: RuBisCo, C-terminal domain family: RuBisCo, large subunit, C-terminal domain domain: Ribulose 1,5-bisphosphate carboxylase-oxygenase species: Rice (Oryza sativa) [TaxId: 4530]
Probab=88.35 E-value=1.1 Score=39.06 Aligned_cols=146 Identities=16% Similarity=0.086 Sum_probs=91.3
Q ss_pred CCCCcEEEEec----CCCHHHHHHHHHHHHHCCCCEEEe--cCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCC
Q 020423 122 PEQHPIVLQIG----GSNLDNLAKATELANAYNYDEINL--NCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNV 195 (326)
Q Consensus 122 ~~~~piivQL~----g~~~~~f~~aA~~a~~aG~d~Iei--n~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~ 195 (326)
-.++|++..+. |-+++++++.+..+...|.|.|-= ++..|. -..++.|.+.+.+.++...+.+|.
T Consensus 14 v~~RPLlgtiiKP~~Glsp~~~a~~~~~~~~GGvD~IKDDE~l~~~~---------~~p~~eRv~~~~~av~~a~~eTG~ 84 (325)
T d1wdda1 14 KYGRPLLGCTIKPKLGLSAKNYGRACYECLRGGLDFTKDDENVNSQP---------FMRWRDRFVFCAEAIYKSQAETGE 84 (325)
T ss_dssp CCSSCEEECBCSSSSCCCHHHHHHHHHHHHHTTCSEEECCTTCSSBT---------TBCHHHHHHHHHHHHHHHHHHHSS
T ss_pred CCCCCeEEeecCCCCCCCHHHHHHHHHHHHccCCceeeCCcccCCCC---------CcchHHHHHHHHHHHHHHHHhhCC
Confidence 36789988875 668999999999999999999864 232221 123446778888888887777776
Q ss_pred cEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHH---HHHHHhcCCCceEEE
Q 020423 196 PVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEY---YYALLRDFPDLTFTL 272 (326)
Q Consensus 196 pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~---i~~i~~~~~~iPVIa 272 (326)
....-+.... .+.+++.+. ++.+.++|++.+.+.-... | |.. +.+..++. ++|+.+
T Consensus 85 ~k~y~~nit~---~~~~em~~r-a~~a~e~G~~~~mi~~~~~---G-------------~~a~~~l~~~~~~~-~l~ih~ 143 (325)
T d1wdda1 85 IKGHYLNATA---GTCEEMIKR-AVFARELGVPIVMHDYLTG---G-------------FTANTSLAHYCRDN-GLLLHI 143 (325)
T ss_dssp CCEEEEECCC---SSHHHHHHH-HHHHHHHTCSEEEEEHHHH---C-------------HHHHHHHHHHHHHH-TCEEEE
T ss_pred ceeEEeccCC---CCHHHHHHH-HHHHHHcCCCEEEEecccc---c-------------HHHHHHHHHhhhhc-Cceeec
Confidence 5444333321 234455543 3344568998887753211 1 333 33332333 677776
Q ss_pred ------------eCCCCCHHHHHHHHH-hCCChhhhhHH
Q 020423 273 ------------NGGINTVDEVNAALR-KGAHHVMVGRA 298 (326)
Q Consensus 273 ------------~GgI~s~~da~~~l~-~GaD~V~iGRa 298 (326)
..|| +..-..++.+ .|||.+.+++.
T Consensus 144 Hra~~ga~tr~~~~Gi-s~~vl~kl~RLaGaD~ih~~~~ 181 (325)
T d1wdda1 144 HRAMHAVIDRQKNHGM-HFRVLAKALRMSGGDHIHAGTV 181 (325)
T ss_dssp ECTTHHHHHSCSSSEE-CHHHHHHHHHHHCCSEEECCCS
T ss_pred ccccccccccCCCCCc-cHHHHHHHHHHcCCCccccCcc
Confidence 4566 4445556666 89999887765
|
| >d1o66a_ c.1.12.8 (A:) Ketopantoate hydroxymethyltransferase PanB {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Ketopantoate hydroxymethyltransferase PanB domain: Ketopantoate hydroxymethyltransferase PanB species: Neisseria meningitidis [TaxId: 487]
Probab=88.34 E-value=5.4 Score=33.21 Aligned_cols=118 Identities=7% Similarity=-0.053 Sum_probs=70.7
Q ss_pred EEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCc-EEEEeccCCC
Q 020423 128 VLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVP-VSVKCRIGVD 206 (326)
Q Consensus 128 ivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~p-v~vK~r~g~~ 206 (326)
+++|...+ ...|+.+.++|.|.|=+--+-. .+. -+|-..+.-..+....-.++||+....+ +.+-+..+..
T Consensus 17 i~~lTayd----~~~A~~ae~agiDiilVGDSlg--m~~--~G~~~T~~vt~d~mi~h~~aV~rga~~~~~i~dmPf~sy 88 (260)
T d1o66a_ 17 IAMLTAYE----SSFAALMDDAGVEMLLVGDSLG--MAV--QGRKSTLPVSLRDMCYHTECVARGAKNAMIVSDLPFGAY 88 (260)
T ss_dssp EEEEECCS----HHHHHHHHHTTCCEEEECTTHH--HHT--TCCSSSTTCCHHHHHHHHHHHHHHCSSSEEEEECCTTSS
T ss_pred EEEEeCCC----HHHHHHHHHcCCCEEEEcCCch--hee--cCCCCccccchhhhhhhhHHHHccCcceeeecchhhhhh
Confidence 56888877 3457778899999998831100 000 0122222345677777788888877554 4455555433
Q ss_pred CCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEe
Q 020423 207 DHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLN 273 (326)
Q Consensus 207 ~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~ 273 (326)
. ...++..+.... +.+.|+|++-+.+... ..+.++.+.+. .|||++-
T Consensus 89 ~-~~~~~~~~a~~~-~~~~gadavk~eg~~~----------------~~~~i~~l~~~--gIPV~gH 135 (260)
T d1o66a_ 89 Q-QSKEQAFAAAAE-LMAAGAHMVKLEGGVW----------------MAETTEFLQMR--GIPVCAH 135 (260)
T ss_dssp S-SCHHHHHHHHHH-HHHTTCSEEEEECSGG----------------GHHHHHHHHHT--TCCEEEE
T ss_pred c-chhHHHHHHHHH-HHHhhhhhccccchhh----------------hhHHHHHHHHc--CCeeEee
Confidence 2 334455553333 4469999999986531 24566666654 7899874
|
| >d1dbwa_ c.23.1.1 (A:) Transcriptional regulatory protein FixJ, receiver domain {Rhizobium meliloti [TaxId: 382]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Transcriptional regulatory protein FixJ, receiver domain species: Rhizobium meliloti [TaxId: 382]
Probab=88.15 E-value=3.5 Score=29.85 Aligned_cols=60 Identities=15% Similarity=0.064 Sum_probs=44.7
Q ss_pred HhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChh
Q 020423 221 VSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHV 293 (326)
Q Consensus 221 ~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V 293 (326)
.+++...|.+.+.-..+ +.. .++.+.++++..+++|||...|-.+.+.+.++++.||+..
T Consensus 42 ~~~~~~~dlvi~D~~mp---~~~----------G~e~~~~lr~~~~~~~iI~lt~~~~~~~~~~a~~~Ga~~y 101 (123)
T d1dbwa_ 42 FAPDVRNGVLVTDLRMP---DMS----------GVELLRNLGDLKINIPSIVITGHGDVPMAVEAMKAGAVDF 101 (123)
T ss_dssp HGGGCCSEEEEEECCST---TSC----------HHHHHHHHHHTTCCCCEEEEECTTCHHHHHHHHHTTCSEE
T ss_pred HHhhcCCcEEEEeccCc---ccc----------chHHHHHHHhcCCCCeEEEEEeeCCHHHHHHHHHCCCCEE
Confidence 34456677777654332 211 2788888877777899999999999999999999998763
|
| >d1vqta1 c.1.2.3 (A:1-198) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Decarboxylase domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) species: Thermotoga maritima [TaxId: 2336]
Probab=87.88 E-value=4.5 Score=32.25 Aligned_cols=38 Identities=5% Similarity=0.046 Sum_probs=29.5
Q ss_pred CCCCCcEEEEec-CCCHHHHHHHHHHHHHCCCCEEEecC
Q 020423 121 SPEQHPIVLQIG-GSNLDNLAKATELANAYNYDEINLNC 158 (326)
Q Consensus 121 ~~~~~piivQL~-g~~~~~f~~aA~~a~~aG~d~Iein~ 158 (326)
++.+.+++.-+- +.-|.....+.+.+.+.|+|.+.+|.
T Consensus 43 ~~~~~~IflDlK~~DIpnTv~~~v~~~~~~g~d~itvH~ 81 (198)
T d1vqta1 43 AKRNLKIILDLKFCDIPSTVERSIKSWDHPAIIGFTVHS 81 (198)
T ss_dssp HTTTCEEEEEEEECSCHHHHHHHHHHHCCTTEEEEEEEG
T ss_pred HHCCCcEEEEehhcCccHHHHHHHHHHhhccccEEEEEc
Confidence 445677777763 44577788888889899999999986
|
| >d1xxxa1 c.1.10.1 (A:5-300) Dihydrodipicolinate synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Dihydrodipicolinate synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=87.72 E-value=3 Score=35.06 Aligned_cols=67 Identities=9% Similarity=0.107 Sum_probs=51.7
Q ss_pred CCCCCcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEE
Q 020423 121 SPEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVK 200 (326)
Q Consensus 121 ~~~~~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK 200 (326)
.....|++++..+.+.++-.+.++.++++|+|++-+.. |... . ...+-+.+..+.|.++++.|+.+=
T Consensus 73 ~~~~~~vi~g~~~~s~~~~i~~a~~a~~~Gad~v~i~~--P~~~-~----------~~~~~l~~~~~~v~~~~~~pi~lY 139 (296)
T d1xxxa1 73 VGDRARVIAGAGTYDTAHSIRLAKACAAEGAHGLLVVT--PYYS-K----------PPQRGLQAHFTAVADATELPMLLY 139 (296)
T ss_dssp HTTTSEEEEECCCSCHHHHHHHHHHHHHHTCSEEEEEC--CCSS-C----------CCHHHHHHHHHHHHTTCSSCEEEE
T ss_pred hccccceEeccccchhHHHHHHHHHHHHhcCCeEEEEe--ccCC-C----------CCHHHHHHHHHHHHHhcCCCEEEE
Confidence 34557899999999999999999999999999998853 3211 1 124567778888888889998875
|
| >d1geha1 c.1.14.1 (A:137-443) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Archaeon Thermococcus kodakaraensis [TaxId: 311400]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: RuBisCo, C-terminal domain family: RuBisCo, large subunit, C-terminal domain domain: Ribulose 1,5-bisphosphate carboxylase-oxygenase species: Archaeon Thermococcus kodakaraensis [TaxId: 311400]
Probab=87.64 E-value=2.4 Score=36.37 Aligned_cols=146 Identities=15% Similarity=0.148 Sum_probs=90.1
Q ss_pred CCCcEEEEec----CCCHHHHHHHHHHHHHCCCCEEEe--cCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCc
Q 020423 123 EQHPIVLQIG----GSNLDNLAKATELANAYNYDEINL--NCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVP 196 (326)
Q Consensus 123 ~~~piivQL~----g~~~~~f~~aA~~a~~aG~d~Iei--n~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~p 196 (326)
.++|++..+. |.+++++++.+..+...|+|.|-= ++..|. -..++.|.+.+.+.+++..+.+|..
T Consensus 17 ~~RPL~~tiiKP~~Gls~~~~a~~~~~~~~GGvD~IKDDe~la~~~---------~~p~~eRv~~~~~a~~~a~~~TG~~ 87 (307)
T d1geha1 17 KDRPIYGVVPKPKVGYSPEEFEKLAYDLLSNGADYMKDDENLTSPW---------YNRFEERAEIMAKIIDKVENETGEK 87 (307)
T ss_dssp CSSCEEEECCSSCSSCCHHHHHHHHHHHHHTTCCEEECCTTCCCCT---------TSCHHHHHHHHHHHHHHHHHHTCSC
T ss_pred CCCceEEeeeCCcCCCCHHHHHHHHHHHHhcCCCeeeCCccccCCC---------CCcHHHHHHHHHHHHHHHHHHhCCe
Confidence 6789998875 668999999999999999999854 222221 1234477888888888888888776
Q ss_pred EEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEe---
Q 020423 197 VSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLN--- 273 (326)
Q Consensus 197 v~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~--- 273 (326)
...-..+. .+.+++.+. ++.+.+.|.+.+-|..... |+. .+..+++..++. ++||.+-
T Consensus 88 ~lYa~NiT----~~~~em~~r-a~~a~~~G~~~vmi~~~~~---G~~----------al~~lr~~~~~~-~lpIh~H~A~ 148 (307)
T d1geha1 88 KTWFANIT----ADLLEMEQR-LEVLADLGLKHAMVDVVIT---GWG----------ALRYIRDLAADY-GLAIHGHRAM 148 (307)
T ss_dssp CEEECBCC----SSHHHHHHH-HHHHHHHTCCEEEEEHHHH---CHH----------HHHHHHHHHHHT-TCEEEEECTT
T ss_pred eEEEEEcc----CChHHHHHH-HHHHHHcCCCEEEEecccc---chH----------HHHHHHHhhccC-CeEEEecccc
Confidence 65544332 234566554 3455678998887764221 100 022233333343 6777752
Q ss_pred -C--------CCCCHHHHHHHHH-hCCChhhhhH
Q 020423 274 -G--------GINTVDEVNAALR-KGAHHVMVGR 297 (326)
Q Consensus 274 -G--------gI~s~~da~~~l~-~GaD~V~iGR 297 (326)
| || +..-..++.. .|+|.+.++.
T Consensus 149 ~ga~~~~~~~Gi-s~~vl~kl~Rl~GaD~ih~~~ 181 (307)
T d1geha1 149 HAAFTRNPYHGI-SMFVLAKLYRLIGIDQLHVGT 181 (307)
T ss_dssp GGGTSSCTTSEE-CHHHHHHHHHHHTCSEEECCC
T ss_pred ceeeecCccCCc-cHHHHHHHHHHhCcCceeccc
Confidence 2 33 2333445555 7888777754
|
| >d1ny5a1 c.23.1.1 (A:1-137) Transcriptional activator sigm54 (NtrC1), N-terminal domain {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Transcriptional activator sigm54 (NtrC1), N-terminal domain species: Aquifex aeolicus [TaxId: 63363]
Probab=87.51 E-value=2.4 Score=31.43 Aligned_cols=60 Identities=13% Similarity=0.125 Sum_probs=44.6
Q ss_pred hhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhh
Q 020423 222 SSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVM 294 (326)
Q Consensus 222 le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~ 294 (326)
+.+...|.|.+.-..+ +.. .++.+.++++..+++|||..-+-.+.+.+.++++.||+...
T Consensus 40 l~~~~~dlvilD~~mp---~~~----------G~e~~~~lr~~~~~~piI~lT~~~~~~~~~~a~~~Ga~dyl 99 (137)
T d1ny5a1 40 LSEKHFNVVLLDLLLP---DVN----------GLEILKWIKERSPETEVIVITGHGTIKTAVEAMKMGAYDFL 99 (137)
T ss_dssp HHHSCCSEEEEESBCS---SSB----------HHHHHHHHHHHCTTSEEEEEEETTCHHHHHHHHTTTCCEEE
T ss_pred hhccccccchHHHhhh---hhh----------HHHHHHHHHHhCCCCCEEEEECCCCHHHHHHHHHcCCCEEE
Confidence 3456788888764322 211 26778888777789999998888999999999999987643
|
| >d3bofa1 c.1.21.2 (A:301-560) Cobalamin-dependent methionine synthase MetH, C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Dihydropteroate synthetase-like family: Methyltetrahydrofolate-utiluzing methyltransferases domain: Cobalamin-dependent methionine synthase MetH, C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=87.32 E-value=2 Score=35.99 Aligned_cols=53 Identities=21% Similarity=0.352 Sum_probs=41.7
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEE
Q 020423 135 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVK 200 (326)
Q Consensus 135 ~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK 200 (326)
+.+...+.|+.-.++|+|.+|||.+-|. ....+.+.++++.++..++.|+++-
T Consensus 38 d~d~~~~~A~~qv~~GA~iLDIn~~~~~-------------~~e~~~m~~li~~l~~~~d~PlsID 90 (260)
T d3bofa1 38 NEEIVIKEAKTQVEKGAEVLDVNFGIES-------------QIDVRYVEKIVQTLPYVSNVPLSLD 90 (260)
T ss_dssp CSHHHHHHHHHHHHTTCSEEEEECSSGG-------------GSCHHHHHHHHHHHHHHTCSCEEEE
T ss_pred CHHHHHHHHHHHHHcCCCEEEeecCCch-------------hhhHHHHHHHHHHHHhcCCCCcccc
Confidence 4456667777778899999999876332 1348889999999999999999885
|
| >d1p0ka_ c.1.4.1 (A:) Isopentenyl-diphosphate delta-isomerase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Isopentenyl-diphosphate delta-isomerase species: Bacillus subtilis [TaxId: 1423]
Probab=87.28 E-value=0.83 Score=39.40 Aligned_cols=73 Identities=11% Similarity=0.012 Sum_probs=47.4
Q ss_pred HHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEE--eCCCCCHHHHHHHHHhCCChhhh
Q 020423 220 KVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTL--NGGINTVDEVNAALRKGAHHVMV 295 (326)
Q Consensus 220 ~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa--~GgI~s~~da~~~l~~GaD~V~i 295 (326)
+..++.|.+.+.++...... .... .........++.++++++.. +.|++. +|.+.+++++.++.+.|+|+|.+
T Consensus 114 ~~~~~~g~~ai~~~~~~~~~-~~~~-~~~~~~~~~~~~i~~i~~~~-~~~vivk~v~~~~~~~~a~~~~~~GaD~i~v 188 (329)
T d1p0ka_ 114 EAVEMIGANALQIHLNVIQE-IVMP-EGDRSFSGALKRIEQICSRV-SVPVIVKEVGFGMSKASAGKLYEAGAAAVDI 188 (329)
T ss_dssp HHHHHTTCSEEEEEECTTTT-C---------CTTHHHHHHHHHHHC-SSCEEEEEESSCCCHHHHHHHHHHTCSEEEE
T ss_pred HHHHHcCCCEEEecccccch-hhhc-cccccccchHHHHHHHHHHc-CCCcEEEecCCcchHHHHHHHHhcCCCEEEE
Confidence 44567899999887543211 0000 00011123367777777665 677765 88899999999999999999998
|
| >d1e0ta2 c.1.12.1 (A:1-69,A:168-344) Pyruvate kinase, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Pyruvate kinase domain: Pyruvate kinase, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=86.67 E-value=1.2 Score=37.09 Aligned_cols=123 Identities=11% Similarity=0.036 Sum_probs=71.5
Q ss_pred HHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHH---hcCCCcEEEEeccCCCCCccHHHHHHHHH
Q 020423 143 TELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA---ANTNVPVSVKCRIGVDDHDSYNQLCDFIY 219 (326)
Q Consensus 143 A~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr---~~~~~pv~vK~r~g~~~~~~~~e~~~~ia 219 (326)
.+.+.++|.|.+-||+++-. .+...++++.+| +..+.++.+-+........ -.+..+ +.
T Consensus 20 l~~li~aGvdv~RlN~SHg~----------------~~~~~~~i~~ir~~~~~~~~~~~I~~Dl~gp~lt-ekD~~~-i~ 81 (246)
T d1e0ta2 20 LAKMLDAGMNVMRLNFSHGD----------------YAEHGQRIQNLRNVMSKTGKTAAILLDTKGPALA-EKDKQD-LI 81 (246)
T ss_dssp HHHHHHHTEEEEEEETTSSC----------------HHHHHHHHHHHHHHHHHHTCCCEEEEECCCCSSC-HHHHHH-HH
T ss_pred HHHHHHCCCCEEEEECCCCC----------------HHHHHHHHHHHHHHHHHcCCCCcccccccccccc-cCcchh-hh
Confidence 44566779999999986432 223344444444 4457777766555333221 122211 22
Q ss_pred HHhhhCCccEEEEec-CCcccCCCCcCCcCCCCCccHHHHHHHHhcC--CCceEEEeCCCCCHHHHHHHHH--hCCChhh
Q 020423 220 KVSSLSPTRHFIIHS-RKALLNGISPAENRTIPPLKYEYYYALLRDF--PDLTFTLNGGINTVDEVNAALR--KGAHHVM 294 (326)
Q Consensus 220 ~~le~~Gvd~I~v~~-~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~--~~iPVIa~GgI~s~~da~~~l~--~GaD~V~ 294 (326)
+..+.|+|+|.++- +. ..+...++++.+.. .+++||+ .|.+.+.+..+-+ .-+|+||
T Consensus 82 -~a~~~~vD~ialSFVr~---------------~~Dv~~~r~~l~~~~~~~~~iia--KIE~~~al~nldeIi~~sDgIm 143 (246)
T d1e0ta2 82 -FGCEQGVDFVAASFIRK---------------RSDVIEIREHLKAHGGENIHIIS--KIENQEGLNNFDEILEASDGIM 143 (246)
T ss_dssp -HHHHHTCSEEEESSCCS---------------HHHHHHHHHHHHTTTCTTCEEEE--EECSHHHHHTHHHHHHHSSEEE
T ss_pred -HHHHcCCCEEEEcCCCC---------------HHHHHHHHHHHHHhCCCCceEEE--EecchhhhhchHHHHhhcceEE
Confidence 22357999998862 21 12244555555543 2455554 6778877766555 4599999
Q ss_pred hhHHHHh
Q 020423 295 VGRAAYQ 301 (326)
Q Consensus 295 iGRall~ 301 (326)
|+|+=|.
T Consensus 144 IaRGDLg 150 (246)
T d1e0ta2 144 VARGDLG 150 (246)
T ss_dssp EEHHHHH
T ss_pred EEccchh
Confidence 9999664
|
| >d2a6na1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Dihydrodipicolinate synthase species: Escherichia coli [TaxId: 562]
Probab=86.61 E-value=7.6 Score=32.28 Aligned_cols=68 Identities=13% Similarity=0.082 Sum_probs=52.8
Q ss_pred CCCCCcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEE
Q 020423 121 SPEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVK 200 (326)
Q Consensus 121 ~~~~~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK 200 (326)
.....|+++...+.+.++-.+.++.++++|+|++-+.. |.-. . ...+-+.+-.+.|.++++.|+.+=
T Consensus 67 ~~~~~~vi~g~~~~s~~~~i~~~~~a~~~Gad~~~~~p--P~~~-------~----~~~~~i~~~f~~v~~~~~~pi~iY 133 (292)
T d2a6na1 67 ADGRIPVIAGTGANATAEAISLTQRFNDSGIVGCLTVT--PYYN-------R----PSQEGLYQHFKAIAEHTDLPQILY 133 (292)
T ss_dssp HTTSSCEEEECCCSSHHHHHHHHHTTTTSSCCEEEEEC--CCSS-------C----CCHHHHHHHHHHHHHTCSSCEEEE
T ss_pred ccccceeEeecccchHHHHHHHhccHHhcCCcceeccC--CCCC-------C----CCHHHHHHHHHHHhhccCCcEEEE
Confidence 44557899999999999999999999999999999863 4311 1 134567778888888889999885
Q ss_pred e
Q 020423 201 C 201 (326)
Q Consensus 201 ~ 201 (326)
-
T Consensus 134 n 134 (292)
T d2a6na1 134 N 134 (292)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >d1dosa_ c.1.10.2 (A:) Fructose-bisphosphate aldolase (FBP aldolase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class II FBP aldolase domain: Fructose-bisphosphate aldolase (FBP aldolase) species: Escherichia coli [TaxId: 562]
Probab=86.22 E-value=4.6 Score=35.34 Aligned_cols=162 Identities=10% Similarity=0.132 Sum_probs=92.1
Q ss_pred CCCcEEEEecCCCHH--HHHH--------HHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhc
Q 020423 123 EQHPIVLQIGGSNLD--NLAK--------ATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAAN 192 (326)
Q Consensus 123 ~~~piivQL~g~~~~--~f~~--------aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~ 192 (326)
.+-|+.++|-|.... ++.+ ...++.+.||+-|-+..+. . +++.+.+...++++...+
T Consensus 100 ~~VPV~lHLDHg~~~~~~~i~~~idag~~~~~~~~~~gfsSVMiDgS~-l-----------~~eeNi~~Tk~vve~Ah~- 166 (358)
T d1dosa_ 100 YGVPVILHTDHCAKKLLPWIDGLLDAGEKHFAATGKPLFSSHMIDLSE-E-----------SLQENIEICSKYLERMSK- 166 (358)
T ss_dssp HTCEEEEEECCCCGGGHHHHHHHHHHHHHHHHHHSSCSCSEEEECCTT-S-----------CHHHHHHHHHHHHHHHHH-
T ss_pred CCCCEEEecCccchhhHHHHHHHHHHHHHHHHHhCCCCCccccCCCCc-C-----------CHHHHHHHHHHHHHHHhh-
Confidence 457999999764321 2221 1233445679999986431 1 233567788888877654
Q ss_pred CCCcEEEEecc--CCCC------------CccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHH
Q 020423 193 TNVPVSVKCRI--GVDD------------HDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYY 258 (326)
Q Consensus 193 ~~~pv~vK~r~--g~~~------------~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i 258 (326)
.+++|-.-+-. |.++ ..+.++...++.+..+..|+|.+-+.-++.. +-+.+......+...++.+
T Consensus 167 ~gv~VEaElG~igg~Edg~~~~~~~~~~~~T~peea~~~~~ef~~~tgvD~LAvaiGt~H-G~Yk~~~~~l~p~l~~~~~ 245 (358)
T d1dosa_ 167 IGMTLEIELGCTGGEEDGVDNSHMDASALYTQPEDVDYAYTELSKISPRFTIAASFGNVH-GVYKAGNVVLTPTILRDSQ 245 (358)
T ss_dssp TTCEEEEECCCCCCCCCCCSCCCCCCCCCSCCHHHHHHHHHHHHTTCSCEEEECCSSCCC-SSCCCSCCCCCTHHHHHHH
T ss_pred hCCeEEEeeeeeecccCCccccccchhhccCCHHHHHHHHHHHhccCccceeeeeccchh-hhcCCCCccCCchhhHHHH
Confidence 35555544321 1111 1235555555556667799999998766541 1111100001222334444
Q ss_pred HHHHhcCCCce-----EEEeCCCCCH-HHHHHHHHhCCChhhhhHHH
Q 020423 259 YALLRDFPDLT-----FTLNGGINTV-DEVNAALRKGAHHVMVGRAA 299 (326)
Q Consensus 259 ~~i~~~~~~iP-----VIa~GgI~s~-~da~~~l~~GaD~V~iGRal 299 (326)
..+.+.. ++| ++.=||-..+ +++.++++.|+.=|-++|-+
T Consensus 246 ~~i~~~~-~vp~~~~~LVlHGgSGip~e~i~~ai~~GV~KiNi~Tdl 291 (358)
T d1dosa_ 246 EYVSKKH-NLPHNSLNFVFHGGSGSTAQEIKDSVSYGVVKMNIDTDT 291 (358)
T ss_dssp HHHHHHH-TCCTTCSCEEECSCTTCCHHHHHHHHHTTEEEEEECHHH
T ss_pred HHHHHHh-CCCCcccceeccCCCCCcHHHHHHHHHcCCeEEeeChHH
Confidence 4444432 444 8888876655 56889999998888888764
|
| >d1qwga_ c.1.27.1 (A:) (2r)-phospho-3-sulfolactate synthase ComA {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (2r)-phospho-3-sulfolactate synthase ComA family: (2r)-phospho-3-sulfolactate synthase ComA domain: (2r)-phospho-3-sulfolactate synthase ComA species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=86.06 E-value=4.1 Score=33.78 Aligned_cols=105 Identities=10% Similarity=0.078 Sum_probs=60.5
Q ss_pred HHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCC-----CccHHH
Q 020423 139 LAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDD-----HDSYNQ 213 (326)
Q Consensus 139 f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~-----~~~~~e 213 (326)
+.+..+.+++.|||.|||+-|+-. -..+...++++.+++ .-+.|+.-.|... ..+.++
T Consensus 87 ~~~y~~~~~~lGf~~iEiSdg~~~--------------i~~~~~~~~I~~~~~---~G~~V~~EvG~K~~~~~~~~~~~~ 149 (251)
T d1qwga_ 87 FDEFLNECEKLGFEAVEISDGSSD--------------ISLEERNNAIKRAKD---NGFMVLTEVGKKMPDKDKQLTIDD 149 (251)
T ss_dssp HHHHHHHHHHHTCCEEEECCSSSC--------------CCHHHHHHHHHHHHH---TTCEEEEEECCSSHHHHTTCCHHH
T ss_pred HHHHHHHHHHcCCCEEEEcCCccC--------------CCHHHHHHHHHHHHh---CCCEEeecccCCCCCCccccCHHH
Confidence 556677788899999999754221 112333445554433 2234444455442 234667
Q ss_pred HHHHHHHHhhhCCccEEEEecCCccc-CCCCcCCcCCCCCccHHHHHHHHhcC
Q 020423 214 LCDFIYKVSSLSPTRHFIIHSRKALL-NGISPAENRTIPPLKYEYYYALLRDF 265 (326)
Q Consensus 214 ~~~~ia~~le~~Gvd~I~v~~~~~~~-~g~~~~~~~~~~~~~~~~i~~i~~~~ 265 (326)
.++.+.+.+ ++|++.|.+.+|+... .|.... ......+.+.++.+..
T Consensus 150 ~i~~~~~~L-eaGA~~ViiEarEsg~~~Gi~~~----~g~~r~~~i~~i~~~l 197 (251)
T d1qwga_ 150 RIKLINFDL-DAGADYVIIEGRESGKGKGLFDK----EGKVKENELDVLAKNV 197 (251)
T ss_dssp HHHHHHHHH-HHTCSEEEECCTTTCCSSTTBCT----TSCBCHHHHHHHHTTS
T ss_pred HHHHHHHHH-HCCCceeEeehhhcCCccceecC----CCChhHHHHHHHHHhC
Confidence 776666665 4999999999887432 133221 1223466777776654
|
| >d1peya_ c.23.1.1 (A:) Sporulation response regulator Spo0F {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Sporulation response regulator Spo0F species: Bacillus subtilis [TaxId: 1423]
Probab=85.78 E-value=4.7 Score=28.90 Aligned_cols=57 Identities=9% Similarity=0.078 Sum_probs=43.0
Q ss_pred hCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChh
Q 020423 224 LSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHV 293 (326)
Q Consensus 224 ~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V 293 (326)
+...|.+.+.-..+ +.. .++.++++++..+++|||..-+..+.+.+.++++.||+..
T Consensus 43 ~~~~dlillD~~mP---~~~----------G~el~~~lr~~~~~~pvi~lt~~~~~~~~~~a~~~Ga~~y 99 (119)
T d1peya_ 43 KERPDLVLLDMKIP---GMD----------GIEILKRMKVIDENIRVIIMTAYGELDMIQESKELGALTH 99 (119)
T ss_dssp HHCCSEEEEESCCT---TCC----------HHHHHHHHHHHCTTCEEEEEESSCCHHHHHHHHHTTCCEE
T ss_pred hCCCCEEEEeccCC---CCC----------HHHHHHHHHHhCCCCcEEEEecCCCHHHHHHHHHCCCCEE
Confidence 34578877764332 221 2788888877777899999989999999999999998864
|
| >d1o5ka_ c.1.10.1 (A:) Dihydrodipicolinate synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Dihydrodipicolinate synthase species: Thermotoga maritima [TaxId: 2336]
Probab=85.11 E-value=4.4 Score=33.84 Aligned_cols=70 Identities=11% Similarity=0.139 Sum_probs=53.8
Q ss_pred CCCCCcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEE
Q 020423 121 SPEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVK 200 (326)
Q Consensus 121 ~~~~~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK 200 (326)
.....|++++....+.++-.+.|+.++++|+|+|-+.. |. |.. ...+-+.+-.++|.++++.|+.+=
T Consensus 67 ~~~~~~vi~gv~~~st~~ai~~a~~A~~~Gad~v~v~p--P~--------y~~---~s~~~i~~~~~~ia~a~~~pi~iY 133 (295)
T d1o5ka_ 67 VDGKIPVIVGAGTNSTEKTLKLVKQAEKLGANGVLVVT--PY--------YNK---PTQEGLYQHYKYISERTDLGIVVY 133 (295)
T ss_dssp HTTSSCEEEECCCSCHHHHHHHHHHHHHHTCSEEEEEC--CC--------SSC---CCHHHHHHHHHHHHTTCSSCEEEE
T ss_pred cccCCceEeecccccHHHHHHHHHHHHHcCCCEEEEeC--CC--------CCC---CCHHHHHHHHHHHHhccCCCeeEE
Confidence 44567899999999999999999999999999998843 32 110 235567778888888889998886
Q ss_pred ecc
Q 020423 201 CRI 203 (326)
Q Consensus 201 ~r~ 203 (326)
-.+
T Consensus 134 n~P 136 (295)
T d1o5ka_ 134 NVP 136 (295)
T ss_dssp ECH
T ss_pred ecc
Confidence 443
|
| >d1nsja_ c.1.2.4 (A:) N-(5'phosphoribosyl)antranilate isomerase, PRAI {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: N-(5'phosphoribosyl)antranilate isomerase, PRAI species: Thermotoga maritima [TaxId: 2336]
Probab=85.03 E-value=7.6 Score=30.69 Aligned_cols=44 Identities=16% Similarity=0.238 Sum_probs=30.4
Q ss_pred ccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHH-hCCChhhhhHHH
Q 020423 253 LKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAA 299 (326)
Q Consensus 253 ~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~-~GaD~V~iGRal 299 (326)
.+|..+..+... ..|++.+||| +++.+.++++ .+.++|=+.+++
T Consensus 139 ~dw~~~~~~~~~--~~~~~LAGGl-~~~Nv~~ai~~~~p~gvDvsSgv 183 (205)
T d1nsja_ 139 FDWSLILPYRDR--FRYLVLSGGL-NPENVRSAIDVVRPFAVDVSSGV 183 (205)
T ss_dssp CCGGGTGGGGGG--SSCEEEESSC-CTTTHHHHHHHHCCSEEEESGGG
T ss_pred cchhhcccchhc--ccceeeecCC-CHHHHHHHHHHhCCCEEEEcCcc
Confidence 346655444333 3589999999 7888888886 677766666555
|
| >d1nvma2 c.1.10.5 (A:2-290) 4-hydroxy-2-oxovalerate aldolase DmpG, catalytic domain {Pseudomonas sp. [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: HMGL-like domain: 4-hydroxy-2-oxovalerate aldolase DmpG, catalytic domain species: Pseudomonas sp. [TaxId: 306]
Probab=84.16 E-value=3.4 Score=34.39 Aligned_cols=91 Identities=12% Similarity=-0.003 Sum_probs=59.3
Q ss_pred CCcEEEEec---CCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEE
Q 020423 124 QHPIVLQIG---GSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVK 200 (326)
Q Consensus 124 ~~piivQL~---g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK 200 (326)
+..+.+++. ..+++.+.+.++++.++|+|.|.+- |.+|. -.|+.+.++++.+++..+..+.+.
T Consensus 132 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~I~l~-----------DT~G~---~~P~~v~~~v~~l~~~~~~~~~i~ 197 (289)
T d1nvma2 132 GMDTVGFLMMSHMIPAEKLAEQGKLMESYGATCIYMA-----------DSGGA---MSMNDIRDRMRAFKAVLKPETQVG 197 (289)
T ss_dssp TCEEEEEEESTTSSCHHHHHHHHHHHHHHTCSEEEEE-----------CTTCC---CCHHHHHHHHHHHHHHSCTTSEEE
T ss_pred CCceeeEeeeccccCchhhhHHHHhhccccceeeeec-----------chhhc---ccchhHHHHHHHHHHHhcccccce
Confidence 334555554 3567889999999999999998882 34564 469999999999998874333334
Q ss_pred eccCCCCCccHHHHHHHHHHHhhhCCccEEEEe
Q 020423 201 CRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIH 233 (326)
Q Consensus 201 ~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~ 233 (326)
+...-+....+ ...++ .+ ++|+|.|+.+
T Consensus 198 ~H~Hn~~g~a~---an~l~-A~-~~G~~~id~s 225 (289)
T d1nvma2 198 MHAHHNLSLGV---ANSIV-AV-EEGCDRVDAS 225 (289)
T ss_dssp EECBCTTSCHH---HHHHH-HH-HTTCCEEEEB
T ss_pred eeechHHHHHH---HHHHH-HH-HhCCcEeecc
Confidence 34432222222 22222 22 5999999876
|
| >d2a9pa1 c.23.1.1 (A:2-118) DNA-binding response regulator MicA, N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: DNA-binding response regulator MicA, N-terminal domain species: Streptococcus pneumoniae [TaxId: 1313]
Probab=84.04 E-value=2.6 Score=30.28 Aligned_cols=38 Identities=11% Similarity=0.090 Sum_probs=31.7
Q ss_pred HHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChh
Q 020423 255 YEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHV 293 (326)
Q Consensus 255 ~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V 293 (326)
++.+.++.+. .++|||..-+-.+.++..++++.||+..
T Consensus 60 ~~~~~~i~~~-~~~pvI~lt~~~~~~~~~~a~~~Ga~d~ 97 (117)
T d2a9pa1 60 LEVAKTIRKT-SSVPILMLSAKDSEFDKVIGLELGADDY 97 (117)
T ss_dssp HHHHHHHHTT-CCCCEEEEESCCSHHHHHHHHHHTCSEE
T ss_pred cHHHHHHHhC-CCCCEEEEecCCCHHHHHHHHHcCCCEE
Confidence 6777777654 5899999888899999999999998864
|
| >d1f6ya_ c.1.21.2 (A:) Methyltetrahydrofolate: corrinoid/iron-sulfur protein methyltransferase MetR {Moorella thermoacetica [TaxId: 1525]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Dihydropteroate synthetase-like family: Methyltetrahydrofolate-utiluzing methyltransferases domain: Methyltetrahydrofolate: corrinoid/iron-sulfur protein methyltransferase MetR species: Moorella thermoacetica [TaxId: 1525]
Probab=83.90 E-value=2.1 Score=35.81 Aligned_cols=55 Identities=9% Similarity=0.046 Sum_probs=40.7
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEe
Q 020423 134 SNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKC 201 (326)
Q Consensus 134 ~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~ 201 (326)
.+++...+.|+...+.|+|.|||+.|.+. ....+.+..++..+++.+++|+++-.
T Consensus 22 ~d~~~~~~~A~~m~~~GAdiIDIg~g~~~-------------~~e~e~~~~vi~~l~~~~~vpiSIDT 76 (262)
T d1f6ya_ 22 RDPAPVQEWARRQEEGGARALDLNVGPAV-------------QDKVSAMEWLVEVTQEVSNLTLCLDS 76 (262)
T ss_dssp TCHHHHHHHHHHHHHHTCSEEEEBCC-----------------CHHHHHHHHHHHHHTTCCSEEEEEC
T ss_pred CCHHHHHHHHHHHHHCCCCEEEeCCCCCC-------------CCHHHHHHHHHHHHHHhhcCCccccC
Confidence 46788888888888899999999854322 12356677788888888899998863
|
| >d1m3ua_ c.1.12.8 (A:) Ketopantoate hydroxymethyltransferase PanB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Ketopantoate hydroxymethyltransferase PanB domain: Ketopantoate hydroxymethyltransferase PanB species: Escherichia coli [TaxId: 562]
Probab=83.89 E-value=7.9 Score=32.19 Aligned_cols=139 Identities=9% Similarity=-0.011 Sum_probs=82.8
Q ss_pred EEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCc-EEEEeccCCC
Q 020423 128 VLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVP-VSVKCRIGVD 206 (326)
Q Consensus 128 ivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~p-v~vK~r~g~~ 206 (326)
+++|...+ ...|+.+.++|.|.|=+-=+-. ++. -+|-..+.-..+....-.++|++..... +.+-+..+..
T Consensus 17 i~~lTayD----~~~A~~~~~agvDiiLVGDSlg--mv~--~G~~~T~~vt~d~mi~H~~aV~rga~~~~vv~DmPf~sy 88 (262)
T d1m3ua_ 17 FATITAYD----YSFAKLFADEGLNVMLVGDSLG--MTV--QGHDSTLPVTVADIAYHTAAVRRGAPNCLLLADLPFMAY 88 (262)
T ss_dssp EEEEECCS----HHHHHHHHHHTCCEEEECTTHH--HHT--TCCSSSTTCCHHHHHHHHHHHHHHCTTSEEEEECCTTSS
T ss_pred EEEEEcCC----HHHHHHHHHCCCCEEEEcCcHH--hcc--cCCCCcceechHhHHHHHHHHHhccccceeEeccccccc
Confidence 46788877 3457778889999998731100 000 0012222345677777888888876555 4445555432
Q ss_pred CCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEe-----------CC
Q 020423 207 DHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLN-----------GG 275 (326)
Q Consensus 207 ~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~-----------Gg 275 (326)
.+.++..+...++. +.|+|.|-+.++.. ..+.++.+.+. .|||++- ||
T Consensus 89 --~~~~~a~~~a~~l~-~~GAdaVKlEgg~~----------------~~~~I~~L~~~--gIPV~gHiGL~PQ~~~~~GG 147 (262)
T d1m3ua_ 89 --ATPEQAFENAATVM-RAGANMVKIEGGEW----------------LVETVQMLTER--AVPVCGHLGLTPQSVNIFGG 147 (262)
T ss_dssp --SSHHHHHHHHHHHH-HTTCSEEECCCSGG----------------GHHHHHHHHHT--TCCEEEEEESCGGGHHHHTS
T ss_pred --hhhHHHHHHHHHHH-hcCCcEEEeccchh----------------HHHHHHHHHHc--CCeEEeehhhchhhhhhcCC
Confidence 23445555455555 59999999876431 14566666655 8999884 44
Q ss_pred C----CCHHHHHHHHH-------hCCChhhh
Q 020423 276 I----NTVDEVNAALR-------KGAHHVMV 295 (326)
Q Consensus 276 I----~s~~da~~~l~-------~GaD~V~i 295 (326)
. .+.+++.++++ .||.++.+
T Consensus 148 ~r~qGkt~~ea~~l~~~a~~le~AGaf~ivl 178 (262)
T d1m3ua_ 148 YKVQGRGDEAGDQLLSDALALEAAGAQLLVL 178 (262)
T ss_dssp SCCCCCSHHHHHHHHHHHHHHHHHTCCEEEE
T ss_pred ccccCccHHHHHHHHHHHHHHHhhcceEEEE
Confidence 2 46666655443 67776653
|
| >d1u0sy_ c.23.1.1 (Y:) CheY protein {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: CheY protein species: Thermotoga maritima [TaxId: 2336]
Probab=83.04 E-value=5.8 Score=28.29 Aligned_cols=57 Identities=9% Similarity=0.080 Sum_probs=42.8
Q ss_pred hCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChh
Q 020423 224 LSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHV 293 (326)
Q Consensus 224 ~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V 293 (326)
+...|.+.+.-..+ +. -.++.+.++++..+++|||..-+-.+.+.+.++++.||+..
T Consensus 44 ~~~~dliilD~~mp---~~----------~G~e~~~~ir~~~~~~pvi~ls~~~~~~~~~~a~~~Ga~~y 100 (118)
T d1u0sy_ 44 ELKPDIVTMDITMP---EM----------NGIDAIKEIMKIDPNAKIIVCSAMGQQAMVIEAIKAGAKDF 100 (118)
T ss_dssp HHCCSEEEEECSCG---GG----------CHHHHHHHHHHHCTTCCEEEEECTTCHHHHHHHHHTTCCEE
T ss_pred hccCCEEEEecCCC---CC----------CHHHHHHHHHHhCCCCcEEEEEccCCHHHHHHHHHcCCCEE
Confidence 34578887764322 11 12788888877778899999888899999999999998864
|
| >d2cu0a1 c.1.5.1 (A:3-96,A:207-480) Inosine monophosphate dehydrogenase (IMPDH) {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Pyrococcus horikoshii [TaxId: 53953]
Probab=82.91 E-value=0.25 Score=44.11 Aligned_cols=59 Identities=17% Similarity=0.186 Sum_probs=41.5
Q ss_pred hhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhh
Q 020423 222 SSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVG 296 (326)
Q Consensus 222 le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iG 296 (326)
+.++|+|.|.|+.... ++. -..+.++++++.. ++|||+ |+|.|++.+... .|||+|-+|
T Consensus 124 l~~aGvd~ivID~A~G----h~~--------~~i~~lK~ir~~~-~~~vIa-GNVaT~e~~~~l--~gaD~VkVG 182 (368)
T d2cu0a1 124 LDKAGVDVIVVDTAHA----HNL--------KAIKSMKEMRQKV-DADFIV-GNIANPKAVDDL--TFADAVKVG 182 (368)
T ss_dssp HHHTTCSEEEEECSCC----CCH--------HHHHHHHHHHHTC-CSEEEE-EEECCHHHHTTC--TTSSEEEEC
T ss_pred HHHcCCCEEEecCccc----chh--------hhhhhhhhhhhhc-ccceee-ccccCHHHHHhh--hcCcceeec
Confidence 3469999999986542 110 1145567777766 789886 999999987543 588988776
|
| >d1vr6a1 c.1.10.4 (A:1-338) 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase (DAHP synthase, AroG) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I DAHP synthetase domain: 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase (DAHP synthase, AroG) species: Thermotoga maritima [TaxId: 2336]
Probab=82.27 E-value=3.7 Score=35.64 Aligned_cols=197 Identities=16% Similarity=0.129 Sum_probs=100.5
Q ss_pred ccccCeecC--CcEEEccCCC-CChHHHHHH---HHHcCCCcEEEecceeecccccccc-----chhhhhhc-CCCCCcE
Q 020423 60 EMVARQYLP--PWFSVAPMMD-WTDNHYRTL---ARLISKHAWLYTEMLAAETIIYQQG-----NLDRFLAF-SPEQHPI 127 (326)
Q Consensus 60 ~~ig~~~l~--nrivlAPM~~-~s~~~~r~~---~~~~Gg~gli~te~~~~~~~~~~~~-----~~~~~~~~-~~~~~pi 127 (326)
+++|++++- +..++|-.+. -|..++... +.+.| .-++......+....+..+ .++.+.++ ++.+-|+
T Consensus 83 I~v~gv~iG~~~l~lIAGPC~vES~e~~~~~A~~lke~g-~~~~r~g~fKpRtsp~sf~g~g~~gL~~l~~~k~~~glpv 161 (338)
T d1vr6a1 83 IDLGDVKIGNGYFTIIAGPCSVEGREMLMETAHFLSELG-VKVLRGGAYKPRTSPYSFQGLGEKGLEYLREAADKYGMYV 161 (338)
T ss_dssp EECSSCEESTTEEEEEEECSBCCCHHHHHHHHHHHHHTT-CCEEECBSCCCCCSTTSCCCCTHHHHHHHHHHHHHHTCEE
T ss_pred EEeCCEEECCCceEEEecCCCCCCHHHHHHHHHHHHHhC-ccccccceecccccccccccchHHHHHHHHHHHhhcCcee
Confidence 444554442 3445554444 355544333 44444 5666655544332222111 11112122 2346778
Q ss_pred EEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCC
Q 020423 128 VLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDD 207 (326)
Q Consensus 128 ivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~ 207 (326)
+..+. ++++...++ ++ .|.+.| |+.++.+.+++.++ ..++.||.+|=...
T Consensus 162 vTdV~--~~~~~~~~~----e~-~DilQI---------------~A~~~~n~~LL~~~-----g~t~kpV~lKkG~~--- 211 (338)
T d1vr6a1 162 VTEAL--GEDDLPKVA----EY-ADIIQI---------------GARNAQNFRLLSKA-----GSYNKPVLLKRGFM--- 211 (338)
T ss_dssp EEECS--SGGGHHHHH----HH-CSEEEE---------------CGGGTTCHHHHHHH-----HTTCSCEEEECCTT---
T ss_pred EEecc--chhhhhhhh----ce-eeeEEe---------------chhhccCHHHHHHh-----hccCCcEEecCccc---
Confidence 87764 344433333 33 588877 33444566655443 34689999993322
Q ss_pred CccHHHHHHHHHHHhhhCCccEEEEecCC-cccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEe----CCCCCH--H
Q 020423 208 HDSYNQLCDFIYKVSSLSPTRHFIIHSRK-ALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLN----GGINTV--D 280 (326)
Q Consensus 208 ~~~~~e~~~~ia~~le~~Gvd~I~v~~~~-~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~----GgI~s~--~ 280 (326)
.+++|+...+.++ ...|-.-|.+--|. ....+ ......++..+..+++. ...|||.. ||-+.. .
T Consensus 212 -~s~~e~l~aae~i-~~~Gn~~vilcERG~~t~~~------~~~~~lD~~~i~~~k~~-~~lPVi~DpsHs~G~r~~v~~ 282 (338)
T d1vr6a1 212 -NTIEEFLLSAEYI-ANSGNTKIILCERGIRTFEK------ATRNTLDISAVPIIRKE-SHLPILVDPSHSGGRRDLVIP 282 (338)
T ss_dssp -CCHHHHHHHHHHH-HHTTCCCEEEEECCBCCSCC------SSSSBCCTTHHHHHHHH-BSSCEEECHHHHHCSGGGHHH
T ss_pred -cchhhhhhhHHHH-HhcCCccceeeecccccccc------ccccchhhcccceeecc-ccCceeeCCCCCCCchhHHHH
Confidence 3566666543333 45676666664332 11111 11122345555555544 47999973 554433 3
Q ss_pred HHHHHHHhCCChhhhh
Q 020423 281 EVNAALRKGAHHVMVG 296 (326)
Q Consensus 281 da~~~l~~GaD~V~iG 296 (326)
-+..++..|||++++=
T Consensus 283 larAAvA~GadGl~iE 298 (338)
T d1vr6a1 283 LSRAAIAVGAHGIIVE 298 (338)
T ss_dssp HHHHHHHHTCSEEEEE
T ss_pred HHHHHHHhCCCEEEEE
Confidence 4566777999999875
|
| >d1pvna1 c.1.5.1 (A:2-99,A:231-494) Inosine monophosphate dehydrogenase (IMPDH) {Tritrichomonas foetus [TaxId: 5724]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Tritrichomonas foetus [TaxId: 5724]
Probab=81.87 E-value=0.25 Score=44.02 Aligned_cols=63 Identities=13% Similarity=0.085 Sum_probs=43.4
Q ss_pred HhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcC-CCceEEEeCCCCCHHHHHHHHHhCCChhhhh
Q 020423 221 VSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF-PDLTFTLNGGINTVDEVNAALRKGAHHVMVG 296 (326)
Q Consensus 221 ~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~-~~iPVIa~GgI~s~~da~~~l~~GaD~V~iG 296 (326)
.+.++|+|+|.+..... ++. ...+.++.+.+.. +++|| .+|.|.|++.+.++++.|||+|-+|
T Consensus 117 ~L~~ag~d~i~IDvAhG----~~~--------~v~~~i~~ir~~~~~~~~I-iAGNVaT~e~~~~L~~aGaD~vkVG 180 (362)
T d1pvna1 117 ALVEAGADVLCIDSSDG----FSE--------WQKITIGWIREKYGDKVKV-GAGNIVDGEGFRYLADAGADFIKIG 180 (362)
T ss_dssp HHHHHTCSEEEECCSCC----CBH--------HHHHHHHHHHHHHGGGSCE-EEEEECSHHHHHHHHHHTCSEEEEC
T ss_pred HHhhcCceEEeechhcc----chh--------HHHHHHHHHHHhhccceee-ecccccCHHHHHHHHHhCCcEEEec
Confidence 34568999999976542 111 0134455554444 34665 4689999999999999999999887
|
| >d1sfla_ c.1.10.1 (A:) Type I 3-dehydroquinate dehydratase {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Type I 3-dehydroquinate dehydratase species: Staphylococcus aureus [TaxId: 1280]
Probab=81.83 E-value=12 Score=30.39 Aligned_cols=94 Identities=13% Similarity=0.141 Sum_probs=54.7
Q ss_pred EEEEecCC-C-HHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC-CCcEEEEecc
Q 020423 127 IVLQIGGS-N-LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCRI 203 (326)
Q Consensus 127 iivQL~g~-~-~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~-~~pv~vK~r~ 203 (326)
+++-+... . .+.+.++.+ ....++|.||+-+.. |.. .+++.+.+++..+++.. +.|+.+=+|.
T Consensus 4 ~~~~~~~~~~~e~~~~~~~~-~~~~~~D~vElRlD~----------l~~---~~~~~v~~~~~~l~~~~~~~PiI~T~R~ 69 (236)
T d1sfla_ 4 VVATITPQLSIEETLIQKIN-HRIDAIDVLELRIDQ----------FEN---VTVDQVAEMITKLKVMQDSFKLLVTYRT 69 (236)
T ss_dssp EEEEECCCC---CHHHHHHH-HTTTTCSEEEEECTT----------STT---CCHHHHHHHHHHHC---CCSEEEEECCB
T ss_pred EEEecCCchhHHHHHHHHHH-hcCcCCCEEEEEecc----------ccC---CCHHHHHHHHHHHHhcCCCCcEEEEEeC
Confidence 44444433 2 233444444 333479999996532 211 24778889999988754 7899998887
Q ss_pred CCCCC---ccHHHHHHHHHHHhhhCCccEEEEec
Q 020423 204 GVDDH---DSYNQLCDFIYKVSSLSPTRHFIIHS 234 (326)
Q Consensus 204 g~~~~---~~~~e~~~~ia~~le~~Gvd~I~v~~ 234 (326)
.++.. .+.++-.+.+.++.+..|+|+|++.-
T Consensus 70 ~~eGG~~~~~~~~~~~ll~~~~~~~~~d~iDiE~ 103 (236)
T d1sfla_ 70 KLQGGYGQFTNDSYLNLISDLANINGIDMIDIEW 103 (236)
T ss_dssp GGGTSCBCCCHHHHHHHHHHGGGCTTCCEEEEEC
T ss_pred HHHCCCCCCCHHHHHHHHHHHHHhcCCchhhhhh
Confidence 54321 12334445455566556899999963
|
| >d2ayxa1 c.23.1.1 (A:817-949) Sensor kinase protein RcsC, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Sensor kinase protein RcsC, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=81.68 E-value=2.6 Score=31.11 Aligned_cols=58 Identities=10% Similarity=0.010 Sum_probs=43.2
Q ss_pred hhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChh
Q 020423 223 SLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHV 293 (326)
Q Consensus 223 e~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V 293 (326)
.+...|.|.+.-..+ ++. .++.+.++++...++||+..-+-.+.++..++++.|++..
T Consensus 49 ~~~~~dlillD~~mP---~~d----------G~el~~~ir~~~~~~pii~lt~~~~~~~~~~~~~~G~~~~ 106 (133)
T d2ayxa1 49 SKNHIDIVLSDVNMP---NMD----------GYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSC 106 (133)
T ss_dssp HHSCCSEEEEEESSC---SSC----------CHHHHHHHHHHHCCSCEEEEESSTTSHHHHHHHHCCCEEE
T ss_pred hccCceEEEEeccCC---CCC----------HHHHHHHHHHhCCCCCEEEEeccCCHHHHHHHHHcCCCEE
Confidence 456788887765432 111 2777777777666899999988889999999999998764
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| >d1kkoa1 c.1.11.2 (A:161-411) beta-Methylaspartase {Citrobacter amalonaticus [TaxId: 35703]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: beta-Methylaspartase species: Citrobacter amalonaticus [TaxId: 35703]
Probab=81.53 E-value=11 Score=30.99 Aligned_cols=156 Identities=12% Similarity=0.081 Sum_probs=80.8
Q ss_pred CCCcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEec
Q 020423 123 EQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCR 202 (326)
Q Consensus 123 ~~~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r 202 (326)
..-|+..|..++..+. .+..- . .+++... |.+-.+-+ ..-+..|+++...++.+.+.++++|...|..+.+.+-
T Consensus 5 ~~VP~~g~~g~~~~~~-~e~mI--~-~~a~~~~-~~~~~~lk-~kvG~~g~~~~e~~~~~~~rI~~~r~~~G~~~~i~iD 78 (251)
T d1kkoa1 5 EAIPLFGQSGDDRYIA-VDKMI--L-KGVDVLP-HALINNVE-EKLGFKGEKLREYVRWLSDRILSLRSSPRYHPTLHID 78 (251)
T ss_dssp CCCCEECCCTTCTTHH-HHHHH--H-TTCSEEE-ETTCCCCC-CCCCTTSHHHHHHHHHHHHHHHHHCSSTTCCCEEEEE
T ss_pred CCcccccccCCCcccc-hHHHH--H-hhhHHHH-HHHHHHHH-HHhCCCCCCcHHHHHHHHHHHHHHHhCcCCCcceeec
Confidence 3456666665554432 22221 1 2555542 22211111 1123346666555666677777777777666555554
Q ss_pred cCC----CCCccHHHHHHHHHHHhhhCCccE-EEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhc----CCCceEEEe
Q 020423 203 IGV----DDHDSYNQLCDFIYKVSSLSPTRH-FIIHSRKALLNGISPAENRTIPPLKYEYYYALLRD----FPDLTFTLN 273 (326)
Q Consensus 203 ~g~----~~~~~~~e~~~~ia~~le~~Gvd~-I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~----~~~iPVIa~ 273 (326)
... ....+.++.++++.++ ++.+.++ +.+...-. .+ -.+.+++.++++.+. ..++||++-
T Consensus 79 ~~~~~~~~~~~~~~~ai~~l~~L-~~~~~~~~l~IEqP~~--~~--------~~~~d~~gl~~l~~~l~~~g~~vpI~~D 147 (251)
T d1kkoa1 79 VYGTIGLIFDMDPVRCAEYIASL-EKEAQGLPLYIEGPVD--AG--------NKPDQIRMLTAITKELTRLGSGVKIVAD 147 (251)
T ss_dssp CTTHHHHHTTTCHHHHHHHHHHT-GGGGTTSCEEEECCCC--CS--------SHHHHHHHHHHHHHHHHHHTCCCEEEEC
T ss_pred cccccccccCCCHHHHHHHHHHH-HHhcCCCceeecCCcc--cc--------cchHHHHHHHHHHHHHhccCCCceEecc
Confidence 321 0012455666665554 4444433 22321100 00 011235545554433 347999999
Q ss_pred CCCCCHHHHHHHHHhC-CChhhh
Q 020423 274 GGINTVDEVNAALRKG-AHHVMV 295 (326)
Q Consensus 274 GgI~s~~da~~~l~~G-aD~V~i 295 (326)
=.+.|.+++.++++.| +|.|++
T Consensus 148 E~~~t~~d~~~~i~~~a~d~v~i 170 (251)
T d1kkoa1 148 EWCNTYQDIVDFTDAGSCHMVQI 170 (251)
T ss_dssp TTCCSHHHHHHHHHTTCCSEEEE
T ss_pred ceeCCHHHHHHHHHhCCccceec
Confidence 8999999999999965 888765
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| >d2q02a1 c.1.15.4 (A:1-271) Putative cytoplasmic protein STM4435 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Xylose isomerase-like family: IolI-like domain: Putative cytoplasmic protein STM4435 species: Salmonella typhimurium [TaxId: 90371]
Probab=80.80 E-value=5.3 Score=32.63 Aligned_cols=131 Identities=8% Similarity=0.091 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEecc-CCCCC--ccHHHH
Q 020423 138 NLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRI-GVDDH--DSYNQL 214 (326)
Q Consensus 138 ~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~-g~~~~--~~~~e~ 214 (326)
.+.++.+.++++|||+|||....+.... .+. .+++.+.++++. .++.+..=... .+.+. ...+++
T Consensus 19 ~lee~l~~a~~~G~dgiEl~~~~~~~~~--~~~------~~~~~~k~~l~~----~gl~i~~l~~~~~~~~~~~~~~~~~ 86 (271)
T d2q02a1 19 SIEAFFRLVKRLEFNKVELRNDMPSGSV--TDD------LNYNQVRNLAEK----YGLEIVTINAVYPFNQLTEEVVKKT 86 (271)
T ss_dssp CHHHHHHHHHHTTCCEEEEETTSTTSST--TTT------CCHHHHHHHHHH----TTCEEEEEEEETTTTSCCHHHHHHH
T ss_pred CHHHHHHHHHHhCCCEEEEecCcccccc--ccc------CCHHHHHHHHHH----cCCcEEEeecccccCCCCHHHHHHH
Confidence 4667788889999999999654333211 121 345555544443 45553321111 12221 122233
Q ss_pred HHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEe------CCCCCHHHHHHHHH
Q 020423 215 CDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLN------GGINTVDEVNAALR 287 (326)
Q Consensus 215 ~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~------GgI~s~~da~~~l~ 287 (326)
.+ +.++..+.|++.|.+...... . ...+... .-.+..+.+..++. ++-+..- .-+.+.+++.++++
T Consensus 87 ~~-~i~~a~~lG~~~v~~~~~~~~--~--~~~~~~~-~~~l~~l~~~a~~~-gv~l~lE~~~~~~~~~~~~~~~~~li~ 158 (271)
T d2q02a1 87 EG-LLRDAQGVGARALVLCPLNDG--T--IVPPEVT-VEAIKRLSDLFARY-DIQGLVEPLGFRVSSLRSAVWAQQLIR 158 (271)
T ss_dssp HH-HHHHHHHHTCSEEEECCCCSS--B--CCCHHHH-HHHHHHHHHHHHTT-TCEEEECCCCSTTCSCCCHHHHHHHHH
T ss_pred HH-HHHHHHHcCCcEEEEecCCCC--c--cchHHHH-HHHHHHHHHHhccC-CeEEEEeecCCcCcccCCHHHHHHHHH
Confidence 22 334455679999988653210 0 0000000 00122333444444 5544432 23678888888887
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| >d1yxya1 c.1.2.5 (A:4-233) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: NanE-like domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE species: Streptococcus pyogenes [TaxId: 1314]
Probab=80.25 E-value=3.2 Score=33.17 Aligned_cols=124 Identities=14% Similarity=0.059 Sum_probs=76.5
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCC-----
Q 020423 133 GSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDD----- 207 (326)
Q Consensus 133 g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~----- 207 (326)
..+++...+.|+.+.+.|+++|.++. + +.++.+|+.++.|+..........
T Consensus 29 ~~~~~~v~~~A~a~~~~Ga~~i~~~~--------------------~----~~~~~ir~~~~~~~~~~~~~~~~~~~~~~ 84 (230)
T d1yxya1 29 SETGGIMPLMAKAAQEAGAVGIRANS--------------------V----RDIKEIQAITDLPIIGIIKKDYPPQEPFI 84 (230)
T ss_dssp CTTCCSHHHHHHHHHHHTCSEEEEES--------------------H----HHHHHHHTTCCSCEEEECBCCCTTSCCCB
T ss_pred CCChHHHHHHHHHHHHCCCeEEEecC--------------------h----hhHHHHHhhhhcchhhhhcccCCcceeee
Confidence 44556677788888889999998842 1 345677888888876654432211
Q ss_pred CccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHH
Q 020423 208 HDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR 287 (326)
Q Consensus 208 ~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~ 287 (326)
.....+. . .....|+|.+.+......... ....++.+..+......+ +..+++.|.+++..+.+
T Consensus 85 ~~~~~~~----~-~~~~~gad~i~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~--~v~~~v~t~~~a~~a~~ 148 (230)
T d1yxya1 85 TATMTEV----D-QLAALNIAVIAMDCTKRDRHD---------GLDIASFIRQVKEKYPNQ--LLMADISTFDEGLVAHQ 148 (230)
T ss_dssp SCSHHHH----H-HHHTTTCSEEEEECCSSCCTT---------CCCHHHHHHHHHHHCTTC--EEEEECSSHHHHHHHHH
T ss_pred chhHHHH----H-HHHhcCCCEEEEecccccccc---------hhhHHHHHHHHHhcCCCc--eEecCCCCHHHHHHHHh
Confidence 1112221 2 233589999988754321110 011256666666555333 33347999999999999
Q ss_pred hCCChhhhh
Q 020423 288 KGAHHVMVG 296 (326)
Q Consensus 288 ~GaD~V~iG 296 (326)
.|+|.+.+.
T Consensus 149 ~Gad~i~~~ 157 (230)
T d1yxya1 149 AGIDFVGTT 157 (230)
T ss_dssp TTCSEEECT
T ss_pred cCCCEEEee
Confidence 999999764
|