Citrus Sinensis ID: 020453

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320------
Protein Sequence
MDSASIPPKCPFGYDAQSFKIGPLSCMICQALLFECSKCTPCSHVYCKACISRFKDCPLCGADIEKIEADTTLQDVVDRFIEGHARIKRSHTNSDKEEDEAGENKKVIYEDVSMERGAFLVQQAMRAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRSA
Secondary Structure (PSIPRED)
cccccccccccccccccccccccEEcccccccccccccccccccccHHHHHHcccccccccHHHHHccccHHHHHHHHHHHcccHHHHcccccccccHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHcHHHHHHHHcccHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHccccccccHHcHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHccHHHHcc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccEEHHHHHHHHcHccccccHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHcccHHccccccccHHHHHccccccEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHccccHHHHHHccHHHHHHHHHHHHHHHHHccccccHHHEEEEEEHcccccHHHHccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccccHcHHHHHHHHHHHHHHHHHHHHcccccccc
Coil and Loop (DISEMBL)
mdsasippkcpfgydaqsfkigplsCMICQALLfecskctpcshvyckacisrfkdcplcgadiekieadTTLQDVVDRFIEGHARIkrshtnsdkeedeagenkkVIYEDVSMERGAFLVQQAMRAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKigdlkyyggdlQAARSYYVRSLNVRRdavkrhsnvpsQVLDVAVSLAKVAdvdrsignedvaVDGFQEAIKRLESltlkpeeagleqrcwnssttnfqknhlnqlpkfrsa
Flexible Loop (DISEMBL)
mdsasippkcpfGYDAQSFKIGPLSCMICQALLFECSKCTPCSHVYCKACISRFKDCPLCGADIEKIEADTTLQDVVDRFIEGHarikrshtnsdkeedeagenkkviyeDVSMERGAFLVQQAMRAFRAQNvesaksrlslCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDavkrhsnvpsqvlDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEqrcwnssttnfqknhlnqlpkfrsa
Low Complexity Region (SEG)
MDSASIPPKCPFGYDAQSFKIGPLSCMICQALLFECSKCTPCSHVYCKACISRFKDCPLCGADIEKIEADTTLQDVVDRFIEGHARIKRSHTNSDKEEDEAGENKKVIYEDVSMERGAFLVQQAMRAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRSA
Disordered region (IsUnstruct)
*********CPFGYDAQSFKIGPLSCMICQALLFECSKCTPCSHVYCKACISRFKDCPLCGADIEKIEADTTLQDVVDRFIEGHA*********************VIYEDVSMERGAFLVQQAMRAFRAQ********LSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLT**********************************
Disordered Region (DISOPRED)
*****************SFKIGPLSCMICQALLFECSKCTPCSHVYCKACISRFKDCPLCGADIEKIEADTTLQDVVDRFIEGHARIKRSHTNSDKEEDEAGENKKVIYEDVSMERGAFLVQQAMRAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQ*******
Disordered Region (DISEMBL)
MDSASIPPKCPFGYDAQSFKIGPLSCMICQALLFECSKCTPCSHVYCKACISRFKDCPLCGADIEKIEADTTLQDVVDRFIEGHARIKR*************ENKKVIYEDVSMERGAFLVQQAMRAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRSA
Disordered Region (DISPRO)
*****IPPKCPFGYDAQSFKIGPLSCMICQALLFECSKCTPCSHVYCKACISRFKDCPLCGADIEKIEADTTLQDVVDRFIEGHA******************NKKVIYEDVSMERGAFLVQQAMRAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQ*******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MDSASIPPKCPFGYDAQSFKIGPLSCMICQALLFECSKCTPCSHVYCKACISRFKDCPLCGADIEKIEADTTLQDVVDRFIEGHARIKRSHTNSDKEEDEAGENKKVIYEDVSMERGAFLVQQAMRAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRSA
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	326	2.2.26 [Sep-21-2011]
Q5FWP4	625	E3 ubiquitin-protein liga	N/A	no	0.260	0.136	0.309	2e-07
A5WW08	637	E3 ubiquitin-protein liga	yes	no	0.205	0.105	0.338	8e-07
Q810L3	664	E3 ubiquitin-protein liga	yes	no	0.205	0.100	0.352	2e-06
Q6P256	626	E3 ubiquitin-protein liga	yes	no	0.205	0.107	0.352	2e-06
Q96EP1	664	E3 ubiquitin-protein liga	yes	no	0.205	0.100	0.352	2e-06
Q5RF77	571	E3 ubiquitin-protein liga	yes	no	0.205	0.117	0.352	3e-06
Q640D5	323	Polycomb complex protein	N/A	no	0.269	0.272	0.265	5e-06
Q91648	326	Polycomb complex protein	N/A	no	0.269	0.269	0.309	7e-06
Q5SDR3	326	Polycomb complex protein	no	no	0.269	0.269	0.300	2e-05
Q8JIR0	320	Polycomb complex protein	no	no	0.269	0.275	0.256	2e-05

>sp|Q5FWP4|CHFR_XENLA E3 ubiquitin-protein ligase CHFR OS=Xenopus laevis GN=chfr PE=1 SV=1

 Score = 56.6 bits (135), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 50/97 (51%), Gaps = 12/97 (12%)

Query: 6   IPPKCPFGY--DAQSFKIGP------LSCMICQALLFECSKCTPCSHVYCKACISRFKD- 56
           +P  CP G   ++++  + P      L+C+ICQ LL +C    PC H +C AC S + + 
Sbjct: 238 VPASCPIGASDESKTPSMKPDKMEETLTCIICQELLHDCVSLQPCMHTFCAACYSGWMER 297

Query: 57  ---CPLCGADIEKIEADTTLQDVVDRFIEGHARIKRS 90
              CP C   +E+I  +  L ++V+ ++  H    RS
Sbjct: 298 SSLCPTCRCPVERICKNHILNNLVEAYLIQHPEKCRS 334

E3 ubiquitin-protein ligase that functions in the antephase checkpoint by actively delaying passage into mitosis in response to microtubule poisons. Acts in early prophase before chromosome condensation, when the centrosome move apart from each other along the periphery of the nucleus. Probably involved in signaling the presence of mitotic stress caused by microtubule poisons by mediating the 'Lys-48'-linked ubiquitination of target proteins, leading to their degradation by the proteasome. May also promote the formation of 'Lys-63'-linked polyubiquitin chains and functions with the specific ubiquitin-conjugating ubc13-mms2 (ube2n-ube2v2) heterodimer. Substrates that are polyubiquitinated at 'Lys-63' are usually not targeted for degradation, but are rather involved in signaling cellular stress.
Xenopus laevis (taxid: 8355)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -

>sp|A5WW08|CHFR_DANRE E3 ubiquitin-protein ligase CHFR OS=Danio rerio GN=chfr PE=2 SV=1

 Score = 55.1 bits (131), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 24/71 (33%), Positives = 40/71 (56%), Gaps = 4/71 (5%)

Query: 24  LSCMICQALLFECSKCTPCSHVYCKACISRFKD----CPLCGADIEKIEADTTLQDVVDR 79
           L+C+ICQ LL++C    PC H +C AC S + +    CP C   +E+I  +  L ++V+ 
Sbjct: 275 LTCIICQDLLYDCISVQPCMHTFCAACYSGWMERSSFCPTCRCPVERIRKNHILNNLVEA 334

Query: 80  FIEGHARIKRS 90
           ++  H    R+
Sbjct: 335 YLLQHPEKCRT 345

E3 ubiquitin-protein ligase that functions in the antephase checkpoint by actively delaying passage into mitosis in response to microtubule poisons. Acts in early prophase before chromosome condensation, when the centrosome move apart from each other along the periphery of the nucleus. Probably involved in signaling the presence of mitotic stress caused by microtubule poisons by mediating the 'Lys-48'-linked ubiquitination of target proteins, leading to their degradation by the proteasome. May also promote the formation of 'Lys-63'-linked polyubiquitin chains and functions with the specific ubiquitin-conjugating ubc13-mms2 (ube2n-ube2v2) heterodimer. Substrates that are polyubiquitinated at 'Lys-63' are usually not targeted for degradation, but are rather involved in signaling cellular stress.

Danio rerio (taxid: 7955)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q810L3|CHFR_MOUSE E3 ubiquitin-protein ligase CHFR OS=Mus musculus GN=Chfr PE=1 SV=1

 Score = 53.5 bits (127), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 4/71 (5%)

Query: 24  LSCMICQALLFECSKCTPCSHVYCKACISRFKD----CPLCGADIEKIEADTTLQDVVDR 79
           L+C+ICQ LL +C    PC H +C AC S + +    CP C   +E+I  +  L ++V+ 
Sbjct: 301 LTCIICQDLLHDCVSLQPCMHTFCAACYSGWMERSSLCPTCRCPVERICKNHILNNLVEA 360

Query: 80  FIEGHARIKRS 90
           ++  H    RS
Sbjct: 361 YLIQHPDKSRS 371

E3 ubiquitin-protein ligase that functions in the antephase checkpoint by actively delaying passage into mitosis in response to microtubule poisons. Acts in early prophase before chromosome condensation, when the centrosome move apart from each other along the periphery of the nucleus. Probably involved in signaling the presence of mitotic stress caused by microtubule poisons by mediating the 'Lys-48'-linked ubiquitination of target proteins, leading to their degradation by the proteasome. Promotes the ubiquitination and subsequent degradation of AURKA and PLK1. Probably acts as a tumor suppressor, possibly by mediating the polyubiquitination of HDAC1, leading to its degradation. May also promote the formation of 'Lys-63'-linked polyubiquitin chains and functions with the specific ubiquitin-conjugating UBC13-MMS2 (UBE2N-UBE2V2) heterodimer. Substrates that are polyubiquitinated at 'Lys-63' are usually not targeted for degradation, but are rather involved in signaling cellular stress.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q6P256|CHFR_XENTR E3 ubiquitin-protein ligase CHFR OS=Xenopus tropicalis GN=chfr PE=2 SV=1

 Score = 53.5 bits (127), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 4/71 (5%)

Query: 24  LSCMICQALLFECSKCTPCSHVYCKACISRFKD----CPLCGADIEKIEADTTLQDVVDR 79
           L+C+ICQ LL +C    PC H +C AC S + +    CP C   +E+I  +  L ++V+ 
Sbjct: 265 LTCIICQELLHDCVSLQPCMHTFCAACYSGWMERSSLCPTCRCPVERICKNHILNNLVEA 324

Query: 80  FIEGHARIKRS 90
           ++  H    RS
Sbjct: 325 YLIQHPEKCRS 335

E3 ubiquitin-protein ligase that functions in the antephase checkpoint by actively delaying passage into mitosis in response to microtubule poisons. Acts in early prophase before chromosome condensation, when the centrosome move apart from each other along the periphery of the nucleus. Probably involved in signaling the presence of mitotic stress caused by microtubule poisons by mediating the 'Lys-48'-linked ubiquitination of target proteins, leading to their degradation by the proteasome. May also promote the formation of 'Lys-63'-linked polyubiquitin chains and functions with the specific ubiquitin-conjugating ubc13-mms2 (ube2n-ube2v2) heterodimer. Substrates that are polyubiquitinated at 'Lys-63' are usually not targeted for degradation, but are rather involved in signaling cellular stress.

Xenopus tropicalis (taxid: 8364)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q96EP1|CHFR_HUMAN E3 ubiquitin-protein ligase CHFR OS=Homo sapiens GN=CHFR PE=1 SV=2

 Score = 53.5 bits (127), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 4/71 (5%)

Query: 24  LSCMICQALLFECSKCTPCSHVYCKACISRFKD----CPLCGADIEKIEADTTLQDVVDR 79
           L+C+ICQ LL +C    PC H +C AC S + +    CP C   +E+I  +  L ++V+ 
Sbjct: 302 LTCIICQDLLHDCVSLQPCMHTFCAACYSGWMERSSLCPTCRCPVERICKNHILNNLVEA 361

Query: 80  FIEGHARIKRS 90
           ++  H    RS
Sbjct: 362 YLIQHPDKSRS 372

E3 ubiquitin-protein ligase that functions in the antephase checkpoint by actively delaying passage into mitosis in response to microtubule poisons. Acts in early prophase before chromosome condensation, when the centrosome move apart from each other along the periphery of the nucleus. Probably involved in signaling the presence of mitotic stress caused by microtubule poisons by mediating the 'Lys-48'-linked ubiquitination of target proteins, leading to their degradation by the proteasome. Promotes the ubiquitination and subsequent degradation of AURKA and PLK1. Probably acts as a tumor suppressor, possibly by mediating the polyubiquitination of HDAC1, leading to its degradation. May also promote the formation of 'Lys-63'-linked polyubiquitin chains and functions with the specific ubiquitin-conjugating UBC13-MMS2 (UBE2N-UBE2V2) heterodimer. Substrates that are polyubiquitinated at 'Lys-63' are usually not targeted for degradation, but are rather involved in signaling cellular stress.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q5RF77|CHFR_PONAB E3 ubiquitin-protein ligase CHFR OS=Pongo abelii GN=CHFR PE=2 SV=1

 Score = 53.1 bits (126), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 4/71 (5%)

Query: 24  LSCMICQALLFECSKCTPCSHVYCKACISRFKD----CPLCGADIEKIEADTTLQDVVDR 79
           L+C+ICQ LL +C    PC H +C AC S + +    CP C   +E+I  +  L ++V+ 
Sbjct: 210 LTCIICQDLLHDCVSLQPCMHTFCAACYSGWMERSSLCPTCRCPVERICKNHILNNLVEA 269

Query: 80  FIEGHARIKRS 90
           ++  H    RS
Sbjct: 270 YLIQHPDKSRS 280

E3 ubiquitin-protein ligase that functions in the antephase checkpoint by actively delaying passage into mitosis in response to microtubule poisons. Acts in early prophase before chromosome condensation, when the centrosome move apart from each other along the periphery of the nucleus. Probably involved in signaling the presence of mitotic stress caused by microtubule poisons by mediating the 'Lys-48'-linked ubiquitination of target proteins, leading to their degradation by the proteasome. Promotes the ubiquitination and subsequent degradation of AURKA and PLK1. Probably acts as a tumor suppressor, possibly by mediating the polyubiquitination of HDAC1, leading to its degradation. May also promote the formation of 'Lys-63'-linked polyubiquitin chains and functions with the specific ubiquitin-conjugating UBC13-MMS2 (UBE2N-UBE2V2) heterodimer. Substrates that are polyubiquitinated at 'Lys-63' are usually not targeted for degradation, but are rather involved in signaling cellular stress.

Pongo abelii (taxid: 9601)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q640D5|BMI1B_XENLA Polycomb complex protein BMI-1-B OS=Xenopus laevis GN=bmi1b PE=2 SV=1

 Score = 52.0 bits (123), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 30/113 (26%), Positives = 52/113 (46%), Gaps = 25/113 (22%)

Query: 24  LSCMICQALLFECSKCTPCSHVYCKACISRF----KDCPLCGADIEK------IEADTTL 73
           L C++C     + +    C H +CK CI R+    K CP+C   + K      I AD TL
Sbjct: 16  LMCVLCGGYFIDAATIIECLHSFCKTCIVRYLETSKYCPICDVQVHKTRPLLNIRADKTL 75

Query: 74  QDVVDRFIEG---------------HARIKRSHTNSDKEEDEAGENKKVIYED 111
           QD+V + + G               H  +  ++ +++   + A E+K++I +D
Sbjct: 76  QDIVYKLVPGLFKGEMKRRRDFYAAHPSVDAANGSNEDRGEVADEDKRIITDD 128

Component of a Polycomb group (PcG) multiprotein PRC1-like complex, a complex class required to maintain the transcriptionally repressive state of many genes, including Hox genes, throughout development. PcG PRC1 complex acts via chromatin remodeling and modification of histones; it mediates monoubiquitination of histone H2A 'Lys-119', rendering chromatin heritably changed in its expressibility. In the PRC1 complex, it is required to stimulate the E3 ubiquitin-protein ligase activity of rnf2.

Xenopus laevis (taxid: 8355)

>sp|Q91648|BMI1A_XENLA Polycomb complex protein BMI-1-A OS=Xenopus laevis GN=bmi1a PE=1 SV=1

 Score = 52.0 bits (123), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 35/113 (30%), Positives = 54/113 (47%), Gaps = 25/113 (22%)

Query: 24  LSCMICQALLFECSKCTPCSHVYCKACISRF----KDCPLCGADIEK------IEADTTL 73
           L C++C     + +    C H +CK CI R+    K CP+C   + K      I AD TL
Sbjct: 16  LMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKTRPLLNIRADKTL 75

Query: 74  QDVVDRFIEG--HARIKR------SHTNSD----KEEDE---AGENKKVIYED 111
           QD+V + + G     +KR      +H ++D      ED    A E+K++I +D
Sbjct: 76  QDIVYKLVPGLFKGEMKRRRDFYAAHPSADVANGSNEDRGEVADEDKRIITDD 128

Component of a Polycomb group (PcG) multiprotein PRC1-like complex, a complex class required to maintain the transcriptionally repressive state of many genes, including Hox genes, throughout development. PcG PRC1 complex acts via chromatin remodeling and modification of histones; it mediates monoubiquitination of histone H2A 'Lys-119', rendering chromatin heritably changed in its expressibility. In the PRC1 complex, it is required to stimulate the E3 ubiquitin-protein ligase activity of rnf2.

Xenopus laevis (taxid: 8355)

>sp|Q5SDR3|BMI1_CHICK Polycomb complex protein BMI-1 OS=Gallus gallus GN=BMI1 PE=2 SV=1

 Score = 50.4 bits (119), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/113 (30%), Positives = 54/113 (47%), Gaps = 25/113 (22%)

Query: 24  LSCMICQALLFECSKCTPCSHVYCKACISRF----KDCPLCGADIEK------IEADTTL 73
           L C++C     + +    C H +CK CI R+    K CP+C   + K      I +D TL
Sbjct: 16  LMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKTRPLLNIRSDKTL 75

Query: 74  QDVVDRFIEG--HARIKR------SHTNSD----KEEDE---AGENKKVIYED 111
           QD+V + + G     +KR      +H ++D      ED    A E+K++I +D
Sbjct: 76  QDIVYKLVPGLFKNEMKRRRDFYAAHPSADAANGSNEDRGEVADEDKRIITDD 128

Component of a Polycomb group (PcG) multiprotein PRC1-like complex, a complex class required to maintain the transcriptionally repressive state of many genes, including Hox genes, throughout development. PcG PRC1 complex acts via chromatin remodeling and modification of histones; it mediates monoubiquitination of histone H2A 'Lys-119', rendering chromatin heritably changed in its expressibility. In the PRC1 complex, it is required to stimulate the E3 ubiquitin-protein ligase activity of RNF2/RING2.

Gallus gallus (taxid: 9031)

>sp|Q8JIR0|BMI1A_DANRE Polycomb complex protein BMI-1-A OS=Danio rerio GN=bmi1a PE=1 SV=2

 Score = 50.4 bits (119), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/113 (25%), Positives = 52/113 (46%), Gaps = 25/113 (22%)

Query: 24  LSCMICQALLFECSKCTPCSHVYCKACISRF----KDCPLCGADIEK------IEADTTL 73
           L C++C     + +    C H +CK CI R+    K CP+C   + K      I +D TL
Sbjct: 16  LMCVLCGGYFIDATTIIECLHSFCKMCIVRYLETSKYCPICDVQVHKTKPLLNIRSDKTL 75

Query: 74  QDVVDRFIEG---------------HARIKRSHTNSDKEEDEAGENKKVIYED 111
           QD+V + + G               H  +  ++ +++   + A E+K++I +D
Sbjct: 76  QDIVYKLVPGLFKNEMKRRRDFYAEHPSVDAANGSNEDRGEVADEDKRIITDD 128

Component of a Polycomb group (PcG) multiprotein PRC1-like complex, a complex class required to maintain the transcriptionally repressive state of many genes, including Hox genes, throughout development. PcG PRC1 complex acts via chromatin remodeling and modification of histones; it mediates monoubiquitination of histone H2A 'Lys-119', rendering chromatin heritably changed in its expressibility. In the PRC1 complex, it is required to stimulate the E3 ubiquitin-protein ligase activity of rnf2.

Danio rerio (taxid: 7955)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	326
118489075	363	unknown [Populus trichocarpa x Populus d	0.966	0.867	0.798	1e-144
224075908	353	predicted protein [Populus trichocarpa]	0.923	0.852	0.827	1e-143
224053090	363	predicted protein [Populus trichocarpa]	0.920	0.826	0.817	1e-143
296085428	394	unnamed protein product [Vitis vinifera]	0.926	0.766	0.801	1e-143
225465383	369	PREDICTED: uncharacterized protein LOC10	0.926	0.818	0.801	1e-142
356508245	367	PREDICTED: uncharacterized protein LOC10	0.957	0.850	0.787	1e-141
356517714	367	PREDICTED: uncharacterized protein LOC10	0.957	0.850	0.781	1e-138
255569221	392	ubiquitin-protein ligase, putative [Rici	0.957	0.795	0.752	1e-135
449458710	404	PREDICTED: uncharacterized protein LOC10	0.926	0.747	0.741	1e-132
297820180	415	binding protein [Arabidopsis lyrata subs	0.926	0.727	0.728	1e-130

>gi|118489075|gb|ABK96344.1| unknown [Populus trichocarpa x Populus deltoides]

 Score =  516 bits (1328), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 254/318 (79%), Positives = 276/318 (86%), Gaps = 3/318 (0%)

Query: 2   DSASIPPKCPFGYDAQSFKIGPLSCMICQALLFECSKCTPCSHVYCKACISRFKDCPLCG 61
           +SA++ PKCPFGYD+Q+FK+GPLSCMICQALLF+CSKC PCSHVYCK CISRFKDCPLCG
Sbjct: 45  ESATVSPKCPFGYDSQTFKLGPLSCMICQALLFDCSKCVPCSHVYCKVCISRFKDCPLCG 104

Query: 62  ADIEKIEADTTLQDVVDRFIEGHARIKRSHTNSDKEEDEAGENKKVIYEDVSMERGAFLV 121
           AD+EKIEADT LQ VVDRFI+GHARIKRSH + DKE  EAGENKKVIYEDVS+ERGAFLV
Sbjct: 105 ADVEKIEADTDLQSVVDRFIDGHARIKRSHVDMDKE-GEAGENKKVIYEDVSLERGAFLV 163

Query: 122 QQAMRAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDA 181
           QQAMRAFRAQNVESAKSRLSLC EDIR +IE +GNTSELCSQLGAVLGMLGDCCRA+GDA
Sbjct: 164 QQAMRAFRAQNVESAKSRLSLCAEDIRGRIETVGNTSELCSQLGAVLGMLGDCCRAVGDA 223

Query: 182 DAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRR 241
            +AV YF +SVEFL KL   DLEI HT SVSLNKIGDLKYY GDL+AARSYY+RSLNVRR
Sbjct: 224 GSAVTYFEESVEFLSKLAAADLEITHTHSVSLNKIGDLKYYDGDLEAARSYYMRSLNVRR 283

Query: 242 DAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLE 301
           DA+K H +V SQ LDVAVSLAKVAD DRSIGNED A+D F EAIK LESLTLKPEEAGLE
Sbjct: 284 DAIKHHPSVSSQTLDVAVSLAKVADADRSIGNEDAALDRFHEAIKLLESLTLKPEEAGLE 343

Query: 302 QRCWNSSTTNFQKNHLNQ 319
           QR    S   F  N L +
Sbjct: 344 QR--RLSVLEFLNNQLAE 359

Source: Populus trichocarpa x Populus deltoides

Species: Populus trichocarpa x Populus deltoides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224075908|ref|XP_002304823.1| predicted protein [Populus trichocarpa] gi|222842255|gb|EEE79802.1| predicted protein [Populus trichocarpa]

 Score =  513 bits (1322), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 250/302 (82%), Positives = 271/302 (89%), Gaps = 1/302 (0%)

Query: 2   DSASIPPKCPFGYDAQSFKIGPLSCMICQALLFECSKCTPCSHVYCKACISRFKDCPLCG 61
           +SA++ PKCPFGYD+Q+FK+GPLSCMICQALLF+CSKC PCSHVYCK CISRFKDCPLCG
Sbjct: 45  ESATVSPKCPFGYDSQTFKLGPLSCMICQALLFDCSKCVPCSHVYCKVCISRFKDCPLCG 104

Query: 62  ADIEKIEADTTLQDVVDRFIEGHARIKRSHTNSDKEEDEAGENKKVIYEDVSMERGAFLV 121
           AD+EKIEADT LQ VVDRFI+GHARIKRSH + DKE  EAGENKKVIYEDVS+ERGAFLV
Sbjct: 105 ADVEKIEADTDLQSVVDRFIDGHARIKRSHVDMDKE-GEAGENKKVIYEDVSLERGAFLV 163

Query: 122 QQAMRAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDA 181
           QQAMRAFRAQNVESAKSRLSLC EDIR +IE +GNTSELCSQLGAVLGMLGDCCRA+GDA
Sbjct: 164 QQAMRAFRAQNVESAKSRLSLCAEDIRGRIETVGNTSELCSQLGAVLGMLGDCCRAVGDA 223

Query: 182 DAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRR 241
            +AV YF +SVEFL KL   DLEI HT SVSLNKIGDLKYY GDL+AARSYY+RSLNVRR
Sbjct: 224 GSAVTYFEESVEFLSKLAAADLEITHTHSVSLNKIGDLKYYDGDLEAARSYYMRSLNVRR 283

Query: 242 DAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLE 301
           DA+K H +V SQ LDVAVSLAKVAD DRSIGNED A+D F EAIK LESLTLKPEEAGLE
Sbjct: 284 DAIKHHPSVSSQTLDVAVSLAKVADADRSIGNEDAALDRFHEAIKLLESLTLKPEEAGLE 343

Query: 302 QR 303
           QR
Sbjct: 344 QR 345

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224053090|ref|XP_002297702.1| predicted protein [Populus trichocarpa] gi|222844960|gb|EEE82507.1| predicted protein [Populus trichocarpa]

 Score =  513 bits (1321), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 246/301 (81%), Positives = 273/301 (90%), Gaps = 1/301 (0%)

Query: 3   SASIPPKCPFGYDAQSFKIGPLSCMICQALLFECSKCTPCSHVYCKACISRFKDCPLCGA 62
           SA++ PKCPFGYD+Q+FK+GP SCMICQALLF+CSKC PCSHVYCK CISRFKDCPLCGA
Sbjct: 46  SATVSPKCPFGYDSQTFKLGPHSCMICQALLFDCSKCVPCSHVYCKVCISRFKDCPLCGA 105

Query: 63  DIEKIEADTTLQDVVDRFIEGHARIKRSHTNSDKEEDEAGENKKVIYEDVSMERGAFLVQ 122
           DIE+IEADT LQ VVDRF++GHARIKRSH + DKE  + GENKKVIYEDVS+ERGAFLVQ
Sbjct: 106 DIERIEADTDLQSVVDRFVDGHARIKRSHVDMDKE-GKVGENKKVIYEDVSLERGAFLVQ 164

Query: 123 QAMRAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDAD 182
           QAMRAFRAQNVESA+SRLSLC EDIR QIE  G+TSELCSQLGAVLGMLGDCCR+MGDA 
Sbjct: 165 QAMRAFRAQNVESARSRLSLCAEDIRGQIEIAGSTSELCSQLGAVLGMLGDCCRSMGDAG 224

Query: 183 AAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRD 242
           +AV+YF +SVEFL KLP  DLEI+HTLSVSLNKIGDLKYY GDL+AARSYY+RSLNVRRD
Sbjct: 225 SAVSYFEESVEFLSKLPAADLEIMHTLSVSLNKIGDLKYYDGDLEAARSYYIRSLNVRRD 284

Query: 243 AVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQ 302
           A+K H +V SQ LDVAVSLAKVADVDR+IGNED A+D F++AIK LESLTLKPEEAGLEQ
Sbjct: 285 AIKHHPSVSSQTLDVAVSLAKVADVDRTIGNEDAALDRFRDAIKLLESLTLKPEEAGLEQ 344

Query: 303 R 303
           R
Sbjct: 345 R 345

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296085428|emb|CBI29160.3| unnamed protein product [Vitis vinifera]

 Score =  512 bits (1318), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 243/303 (80%), Positives = 272/303 (89%), Gaps = 1/303 (0%)

Query: 1   MDSASIPPKCPFGYDAQSFKIGPLSCMICQALLFECSKCTPCSHVYCKACISRFKDCPLC 60
           +D+ASI PKCPFGYD+Q+FK+GPLSCMICQALLFE SKC PCSHVYCKACISRFKDCPLC
Sbjct: 76  VDAASISPKCPFGYDSQTFKLGPLSCMICQALLFESSKCVPCSHVYCKACISRFKDCPLC 135

Query: 61  GADIEKIEADTTLQDVVDRFIEGHARIKRSHTNSDKEEDEAGENKKVIYEDVSMERGAFL 120
           GADIEKIEAD  LQ+ VDRFIEGH RIKR H N+D EE   G++K VIYEDVS+ERGAFL
Sbjct: 136 GADIEKIEADMNLQNTVDRFIEGHGRIKRPHVNTDSEE-AVGDDKTVIYEDVSLERGAFL 194

Query: 121 VQQAMRAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGD 180
           VQ AMRAFRA NVESAKSRLS+C EDIR Q+E++GNTSELCSQLGAVLGMLGDCCRA GD
Sbjct: 195 VQHAMRAFRANNVESAKSRLSICAEDIRGQLEKLGNTSELCSQLGAVLGMLGDCCRATGD 254

Query: 181 ADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVR 240
           AD+AV YF +SV+FL KLP DDLEI HTLSVSLNKIGDLKYY GDL+AARSYY +SL+VR
Sbjct: 255 ADSAVTYFEESVDFLRKLPADDLEITHTLSVSLNKIGDLKYYDGDLEAARSYYSQSLDVR 314

Query: 241 RDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGL 300
           R+A+K  SNVPSQ+LDVAVSLAKVADV+R++GNEDVA++GF+EAIK LESLTL  EEAGL
Sbjct: 315 RNAIKDRSNVPSQILDVAVSLAKVADVNRNVGNEDVAINGFEEAIKLLESLTLSSEEAGL 374

Query: 301 EQR 303
           EQR
Sbjct: 375 EQR 377

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225465383|ref|XP_002276838.1| PREDICTED: uncharacterized protein LOC100262520 [Vitis vinifera]

 Score =  512 bits (1318), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 243/303 (80%), Positives = 272/303 (89%), Gaps = 1/303 (0%)

Query: 1   MDSASIPPKCPFGYDAQSFKIGPLSCMICQALLFECSKCTPCSHVYCKACISRFKDCPLC 60
           +D+ASI PKCPFGYD+Q+FK+GPLSCMICQALLFE SKC PCSHVYCKACISRFKDCPLC
Sbjct: 51  VDAASISPKCPFGYDSQTFKLGPLSCMICQALLFESSKCVPCSHVYCKACISRFKDCPLC 110

Query: 61  GADIEKIEADTTLQDVVDRFIEGHARIKRSHTNSDKEEDEAGENKKVIYEDVSMERGAFL 120
           GADIEKIEAD  LQ+ VDRFIEGH RIKR H N+D EE   G++K VIYEDVS+ERGAFL
Sbjct: 111 GADIEKIEADMNLQNTVDRFIEGHGRIKRPHVNTDSEE-AVGDDKTVIYEDVSLERGAFL 169

Query: 121 VQQAMRAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGD 180
           VQ AMRAFRA NVESAKSRLS+C EDIR Q+E++GNTSELCSQLGAVLGMLGDCCRA GD
Sbjct: 170 VQHAMRAFRANNVESAKSRLSICAEDIRGQLEKLGNTSELCSQLGAVLGMLGDCCRATGD 229

Query: 181 ADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVR 240
           AD+AV YF +SV+FL KLP DDLEI HTLSVSLNKIGDLKYY GDL+AARSYY +SL+VR
Sbjct: 230 ADSAVTYFEESVDFLRKLPADDLEITHTLSVSLNKIGDLKYYDGDLEAARSYYSQSLDVR 289

Query: 241 RDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGL 300
           R+A+K  SNVPSQ+LDVAVSLAKVADV+R++GNEDVA++GF+EAIK LESLTL  EEAGL
Sbjct: 290 RNAIKDRSNVPSQILDVAVSLAKVADVNRNVGNEDVAINGFEEAIKLLESLTLSSEEAGL 349

Query: 301 EQR 303
           EQR
Sbjct: 350 EQR 352

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356508245|ref|XP_003522869.1| PREDICTED: uncharacterized protein LOC100813258 [Glycine max]

 Score =  507 bits (1305), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 249/316 (78%), Positives = 277/316 (87%), Gaps = 4/316 (1%)

Query: 2   DSASIPPKCPFGYDAQSFKIGPLSCMICQALLFECSKCTPCSHVYCKACISRFKDCPLCG 61
           DSAS  PKCPFGYD+QSFKIGPLSC +CQALLF+ SKC PCSHV+CKACISRFKDCPLCG
Sbjct: 45  DSASTSPKCPFGYDSQSFKIGPLSCTVCQALLFDTSKCVPCSHVFCKACISRFKDCPLCG 104

Query: 62  ADIEKIEADTTLQDVVDRFIEGHARIKRSHTNSDKEEDEAGENKKVIYEDVSMERGAFLV 121
           ADI KIE D  LQ VVDRFIEGHARIKRS  ++DK E EA E+K+VIYEDVS+ERG+FLV
Sbjct: 105 ADIVKIEPDANLQGVVDRFIEGHARIKRS-VSADKGE-EAAESKQVIYEDVSLERGSFLV 162

Query: 122 QQAMRAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDA 181
           QQAMRAFRAQN+ESAKSRL+ C EDIRDQ+E++GNTSELCSQLGAVLGMLGDCCRAMGDA
Sbjct: 163 QQAMRAFRAQNLESAKSRLNFCAEDIRDQLEKVGNTSELCSQLGAVLGMLGDCCRAMGDA 222

Query: 182 DAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRR 241
            +AVAYF +SV+FL KLP DDLEI HTLSVSLNKIGDLKYY GDLQAARSYY +SLNVRR
Sbjct: 223 SSAVAYFEESVQFLSKLPKDDLEITHTLSVSLNKIGDLKYYDGDLQAARSYYFKSLNVRR 282

Query: 242 DAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLE 301
           DAVK +SNVPSQVLDVAVSLAKVADVDR++G+E +A DGFQEAI  LESLTLK E +GLE
Sbjct: 283 DAVKHNSNVPSQVLDVAVSLAKVADVDRNLGDEKLATDGFQEAIDLLESLTLKSEASGLE 342

Query: 302 QRCWNSSTTNFQKNHL 317
           QR    S  +F ++ L
Sbjct: 343 QR--RQSVIDFLRSQL 356

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356517714|ref|XP_003527531.1| PREDICTED: uncharacterized protein LOC100813844 [Glycine max]

 Score =  497 bits (1280), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 247/316 (78%), Positives = 273/316 (86%), Gaps = 4/316 (1%)

Query: 2   DSASIPPKCPFGYDAQSFKIGPLSCMICQALLFECSKCTPCSHVYCKACISRFKDCPLCG 61
           DSAS  PKCPFGYD+ SFKIGPLSC +CQALLF+ SKC PCSHV+CKACI RFKDCPLCG
Sbjct: 45  DSASTSPKCPFGYDSHSFKIGPLSCTVCQALLFDTSKCVPCSHVFCKACILRFKDCPLCG 104

Query: 62  ADIEKIEADTTLQDVVDRFIEGHARIKRSHTNSDKEEDEAGENKKVIYEDVSMERGAFLV 121
           ADI KIE D  LQ VVD FIEGHARIKRS  +SDK E EA E+KKVIYEDVS+ERG+FLV
Sbjct: 105 ADIVKIEPDANLQGVVDHFIEGHARIKRS-VSSDKGE-EATESKKVIYEDVSLERGSFLV 162

Query: 122 QQAMRAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDA 181
           QQAMRAFRAQN+ESAKSRL+LC EDIRDQ+E++GNTSELCSQLGAVLGMLGDCCRAMGDA
Sbjct: 163 QQAMRAFRAQNLESAKSRLNLCAEDIRDQLEKVGNTSELCSQLGAVLGMLGDCCRAMGDA 222

Query: 182 DAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRR 241
            +AVAYF +SV+FL KLP DDLEI HTLSVSLNKIGDLKYY  DLQAARSYY +SLNVRR
Sbjct: 223 SSAVAYFEESVQFLSKLPKDDLEITHTLSVSLNKIGDLKYYDEDLQAARSYYFKSLNVRR 282

Query: 242 DAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLE 301
           D VK +SNVPSQVLDVAVSLAKVADVDR++G+E +A DGFQEAI  LESLTLK E +GLE
Sbjct: 283 DVVKHNSNVPSQVLDVAVSLAKVADVDRNLGDEKLATDGFQEAIDLLESLTLKSEASGLE 342

Query: 302 QRCWNSSTTNFQKNHL 317
           QR    S  +F ++ L
Sbjct: 343 QR--RQSVLDFLRSQL 356

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255569221|ref|XP_002525579.1| ubiquitin-protein ligase, putative [Ricinus communis] gi|223535158|gb|EEF36838.1| ubiquitin-protein ligase, putative [Ricinus communis]

 Score =  488 bits (1257), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 237/315 (75%), Positives = 264/315 (83%), Gaps = 3/315 (0%)

Query: 3   SASIPPKCPFGYDAQSFKIGPLSCMICQALLFECSKCTPCSHVYCKACISRFKDCPLCGA 62
           +A+IP KCP GYD++SFKIGPLSC+ICQALLF+ +KC PC+H++CKAC+S F+DCPLCGA
Sbjct: 72  AATIPAKCPLGYDSRSFKIGPLSCIICQALLFDTTKCVPCNHIFCKACVSPFRDCPLCGA 131

Query: 63  DIEKIEADTTLQDVVDRFIEGHARIKRSHTNSDKEEDEAGENKKVIYEDVSMERGAFLVQ 122
           DIEK EA+  LQ  VDRFIEGHARIKRSH N   EE+E GEN KVIYEDVS+ERGAFLVQ
Sbjct: 132 DIEKFEAEMNLQATVDRFIEGHARIKRSHINK-HEEEEVGENTKVIYEDVSLERGAFLVQ 190

Query: 123 QAMRAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDAD 182
            AMRAFRA+N ESAKSRLSLC EDIR QIE  GNT ELCSQLGAVLGMLGDCCRAMGDA 
Sbjct: 191 HAMRAFRAKNFESAKSRLSLCAEDIRGQIEAAGNTPELCSQLGAVLGMLGDCCRAMGDAG 250

Query: 183 AAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRD 242
           +AVAYF +SVEFL K P DD E++HTLSVSLNKIGDLKYY GDL+AA+SYY RSLNVRRD
Sbjct: 251 SAVAYFEESVEFLSKFPTDDQEVMHTLSVSLNKIGDLKYYDGDLEAAKSYYSRSLNVRRD 310

Query: 243 AVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQ 302
           A++ H +V SQ LDVAVSLAKVAD DRS+GNED AV  FQEAIK LESLTLKPEEA L+Q
Sbjct: 311 AIEHHPHVSSQSLDVAVSLAKVADADRSLGNEDAAVSRFQEAIKLLESLTLKPEEAALDQ 370

Query: 303 RCWNSSTTNFQKNHL 317
           R    S   F  N L
Sbjct: 371 R--RLSVLEFLNNQL 383

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449458710|ref|XP_004147090.1| PREDICTED: uncharacterized protein LOC101210945 [Cucumis sativus] gi|449503311|ref|XP_004161939.1| PREDICTED: uncharacterized LOC101210945 [Cucumis sativus]

 Score =  476 bits (1225), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 224/302 (74%), Positives = 257/302 (85%)

Query: 2   DSASIPPKCPFGYDAQSFKIGPLSCMICQALLFECSKCTPCSHVYCKACISRFKDCPLCG 61
           D+A    KCPFGYD+Q+FKIGPLSCMICQALLFECS+C PC+H++CKACISRF DCPLCG
Sbjct: 81  DAAGAGGKCPFGYDSQTFKIGPLSCMICQALLFECSRCVPCTHIFCKACISRFNDCPLCG 140

Query: 62  ADIEKIEADTTLQDVVDRFIEGHARIKRSHTNSDKEEDEAGENKKVIYEDVSMERGAFLV 121
           ADIEKIEAD  LQ  VDRFIEGHARIKR   NSDKE+++  E+K VIYEDVSMERGAFL+
Sbjct: 141 ADIEKIEADDNLQATVDRFIEGHARIKRPQVNSDKEQEKVNESKVVIYEDVSMERGAFLI 200

Query: 122 QQAMRAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDA 181
           QQAMRAFRAQN+ESAKSRL++C EDIRDQ+E+MG++ ELCSQLGAVLG LGDCCRA GDA
Sbjct: 201 QQAMRAFRAQNIESAKSRLTVCVEDIRDQLEKMGSSPELCSQLGAVLGTLGDCCRAAGDA 260

Query: 182 DAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRR 241
            +A+ +F +SVEFL KLP    EI HTLSVSLNKIGDLKYY GDL+AARSYY+RSLNVR+
Sbjct: 261 ASAIKHFEESVEFLSKLPEKTHEITHTLSVSLNKIGDLKYYEGDLEAARSYYLRSLNVRQ 320

Query: 242 DAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLE 301
           DA K H + P+Q+LDVAVSLAKVADVD  +GNED+AVD FQE IK LESL+L  E   L+
Sbjct: 321 DASKHHPDDPAQILDVAVSLAKVADVDSGLGNEDMAVDRFQEGIKLLESLSLNSENPALQ 380

Query: 302 QR 303
            R
Sbjct: 381 HR 382

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297820180|ref|XP_002877973.1| binding protein [Arabidopsis lyrata subsp. lyrata] gi|297323811|gb|EFH54232.1| binding protein [Arabidopsis lyrata subsp. lyrata]

 Score =  471 bits (1213), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 220/302 (72%), Positives = 257/302 (85%)

Query: 2   DSASIPPKCPFGYDAQSFKIGPLSCMICQALLFECSKCTPCSHVYCKACISRFKDCPLCG 61
           DSA++P KCPFGYD+Q+FK+GP SCM+CQALL+E S+C PC+HV+CK C+SRF DCPLCG
Sbjct: 91  DSATVPAKCPFGYDSQTFKLGPFSCMLCQALLYESSRCVPCTHVFCKVCVSRFNDCPLCG 150

Query: 62  ADIEKIEADTTLQDVVDRFIEGHARIKRSHTNSDKEEDEAGENKKVIYEDVSMERGAFLV 121
           ADIE IE D  LQ +VD+FIEGHARIKRS  N  ++E+   +NKKVIY DVSMERG+FLV
Sbjct: 151 ADIESIEVDENLQKMVDQFIEGHARIKRSVVNGTEKEEIENDNKKVIYADVSMERGSFLV 210

Query: 122 QQAMRAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDA 181
           QQAMRAF AQN ESAKSRL++CTEDIRDQ+ R GNT ELCSQLGAVLGMLGDC RAMGD+
Sbjct: 211 QQAMRAFSAQNYESAKSRLAMCTEDIRDQLGREGNTPELCSQLGAVLGMLGDCSRAMGDS 270

Query: 182 DAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRR 241
            +AV +F +SVEFLMKLP++DLEI HTLSVSLNKIGDLKYY  DLQAARSYY R+LNVRR
Sbjct: 271 SSAVKHFEESVEFLMKLPLNDLEITHTLSVSLNKIGDLKYYDEDLQAARSYYDRALNVRR 330

Query: 242 DAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLE 301
           DA+K H N PSQ+LDVAVSLAKVAD+DR++ NE  A DGF+E +K LESL L  E++ LE
Sbjct: 331 DAMKHHPNAPSQILDVAVSLAKVADIDRTLQNEVAATDGFKEGMKLLESLKLDSEDSALE 390

Query: 302 QR 303
           QR
Sbjct: 391 QR 392

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	326
TAIR|locus:2096179	405	AT3G54360 [Arabidopsis thalian	0.926	0.745	0.725	2.9e-119
UNIPROTKB|Q5T8Z4	150	BMI1 "Polycomb complex protein	0.196	0.426	0.32	1.9e-06
UNIPROTKB|Q5T8Z5	92	BMI1 "Polycomb complex protein	0.196	0.695	0.32	1.9e-06
UNIPROTKB|Q5T8Z6	105	BMI1 "Polycomb complex protein	0.196	0.609	0.32	1.9e-06
ZFIN|ZDB-GENE-030131-3522	637	chfr "checkpoint with forkhead	0.242	0.124	0.325	2.5e-06
UNIPROTKB|Q5FWP4	625	chfr "E3 ubiquitin-protein lig	0.260	0.136	0.319	5.3e-06
UNIPROTKB|F5GWT6	349	CHFR "E3 ubiquitin-protein lig	0.242	0.226	0.325	5.7e-06
UNIPROTKB|E1BBP0	663	CHFR "Uncharacterized protein"	0.383	0.188	0.284	9.7e-06
MGI|MGI:2444898	664	Chfr "checkpoint with forkhead	0.438	0.215	0.277	1.2e-05
UNIPROTKB|Q5RF77	571	CHFR "E3 ubiquitin-protein lig	0.242	0.138	0.325	1.3e-05

TAIR|locus:2096179 AT3G54360 [Arabidopsis thaliana (taxid:3702)]

 Score = 1174 (418.3 bits), Expect = 2.9e-119, P = 2.9e-119
 Identities = 219/302 (72%), Positives = 258/302 (85%)

Query:     2 DSASIPPKCPFGYDAQSFKIGPLSCMICQALLFECSKCTPCSHVYCKACISRFKDCPLCG 61
             DSA++P KCPFGYD+Q+FK+GP SCM+CQALL+E S+C PC+HV+CK C++RFKDCPLCG
Sbjct:    84 DSATVPAKCPFGYDSQTFKLGPFSCMLCQALLYESSRCVPCTHVFCKVCLTRFKDCPLCG 143

Query:    62 ADIEKIEADTTLQDVVDRFIEGHARIKRSHTNSDKEEDEAGENKKVIYEDVSMERGAFLV 121
             ADIE IE D  LQ +VD+FIEGHARIKRS  N  ++E+   +NKKVIY DVSMERG+FLV
Sbjct:   144 ADIESIEVDENLQKMVDQFIEGHARIKRSVVNGTEKEEVENDNKKVIYADVSMERGSFLV 203

Query:   122 QQAMRAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDA 181
             QQAMRAF AQN ESAKSRL++CTEDIRDQ+ R GNT ELCSQLGAVLGMLGDC RAMGD+
Sbjct:   204 QQAMRAFSAQNYESAKSRLAMCTEDIRDQLGREGNTPELCSQLGAVLGMLGDCSRAMGDS 263

Query:   182 DAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRR 241
              +AV +F +SVEFLMKLP++DLEI HTLSVSLNKIGDLKYY  DLQAARSYY R+LNVRR
Sbjct:   264 SSAVKHFEESVEFLMKLPLNDLEITHTLSVSLNKIGDLKYYDEDLQAARSYYDRALNVRR 323

Query:   242 DAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLE 301
             DA+K H N PSQ+LDVAVSLAKVAD+DR++ NE  A DGF+E ++ LESL L  E++ LE
Sbjct:   324 DAMKHHPNAPSQILDVAVSLAKVADIDRTLQNEVAATDGFKEGMRLLESLKLDSEDSALE 383

Query:   302 QR 303
             QR
Sbjct:   384 QR 385

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|Q5T8Z4 BMI1 "Polycomb complex protein BMI-1" [Homo sapiens (taxid:9606)]

 Score = 116 (45.9 bits), Expect = 1.9e-06, P = 1.9e-06
 Identities = 24/75 (32%), Positives = 38/75 (50%)

Query:    20 KIGP-LSCMICQALLFECSKCTPCSHVYCKACISRF----KDCPLCGADIEK------IE 68
             ++ P L C++C     + +    C H +CK CI R+    K CP+C   + K      I 
Sbjct:    11 ELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKTRPLLNIR 70

Query:    69 ADTTLQDVVDRFIEG 83
             +D TLQD+V + + G
Sbjct:    71 SDKTLQDIVYKLVPG 85

GO:0008270 "zinc ion binding" evidence=IEA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0001701 "in utero embryonic development" evidence=IEA

GO:0003682 "chromatin binding" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0006959 "humoral immune response" evidence=IEA

GO:0007420 "brain development" evidence=IEA

GO:0016573 "histone acetylation" evidence=IEA

GO:0016574 "histone ubiquitination" evidence=IEA

GO:0016604 "nuclear body" evidence=IEA

GO:0021903 "rostrocaudal neural tube patterning" evidence=IEA

GO:0030890 "positive regulation of B cell proliferation" evidence=IEA

GO:0031519 "PcG protein complex" evidence=IEA

GO:0033092 "positive regulation of immature T cell proliferation in thymus" evidence=IEA

GO:0043066 "negative regulation of apoptotic process" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0048103 "somatic stem cell division" evidence=IEA

GO:0048704 "embryonic skeletal system morphogenesis" evidence=IEA

UNIPROTKB|Q5T8Z5 BMI1 "Polycomb complex protein BMI-1" [Homo sapiens (taxid:9606)]

 Score = 116 (45.9 bits), Expect = 1.9e-06, P = 1.9e-06
 Identities = 24/75 (32%), Positives = 38/75 (50%)

Query:    20 KIGP-LSCMICQALLFECSKCTPCSHVYCKACISRF----KDCPLCGADIEK------IE 68
             ++ P L C++C     + +    C H +CK CI R+    K CP+C   + K      I 
Sbjct:    11 ELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKTRPLLNIR 70

Query:    69 ADTTLQDVVDRFIEG 83
             +D TLQD+V + + G
Sbjct:    71 SDKTLQDIVYKLVPG 85

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|Q5T8Z6 BMI1 "Polycomb complex protein BMI-1" [Homo sapiens (taxid:9606)]

 Score = 116 (45.9 bits), Expect = 1.9e-06, P = 1.9e-06
 Identities = 24/75 (32%), Positives = 38/75 (50%)

Query:    20 KIGP-LSCMICQALLFECSKCTPCSHVYCKACISRF----KDCPLCGADIEK------IE 68
             ++ P L C++C     + +    C H +CK CI R+    K CP+C   + K      I 
Sbjct:    11 ELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKTRPLLNIR 70

Query:    69 ADTTLQDVVDRFIEG 83
             +D TLQD+V + + G
Sbjct:    71 SDKTLQDIVYKLVPG 85

GO:0008270 "zinc ion binding" evidence=IEA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0001701 "in utero embryonic development" evidence=IEA

GO:0003682 "chromatin binding" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0006959 "humoral immune response" evidence=IEA

GO:0007420 "brain development" evidence=IEA

GO:0016573 "histone acetylation" evidence=IEA

GO:0016574 "histone ubiquitination" evidence=IEA

GO:0016604 "nuclear body" evidence=IEA

GO:0021903 "rostrocaudal neural tube patterning" evidence=IEA

GO:0030890 "positive regulation of B cell proliferation" evidence=IEA

GO:0031519 "PcG protein complex" evidence=IEA

GO:0033092 "positive regulation of immature T cell proliferation in thymus" evidence=IEA

GO:0043066 "negative regulation of apoptotic process" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0048103 "somatic stem cell division" evidence=IEA

GO:0048704 "embryonic skeletal system morphogenesis" evidence=IEA

ZFIN|ZDB-GENE-030131-3522 chfr "checkpoint with forkhead and ring finger domains, E3 ubiquitin protein ligase" [Danio rerio (taxid:7955)]

 Score = 139 (54.0 bits), Expect = 2.5e-06, P = 2.5e-06
 Identities = 28/86 (32%), Positives = 46/86 (53%)

Query:    24 LSCMICQALLFECSKCTPCSHVYCKACISRFKD----CPLCGADIEKIEADTTLQDVVDR 79
             L+C+ICQ LL++C    PC H +C AC S + +    CP C   +E+I  +  L ++V+ 
Sbjct:   275 LTCIICQDLLYDCISVQPCMHTFCAACYSGWMERSSFCPTCRCPVERIRKNHILNNLVEA 334

Query:    80 FIEGHARIKRSHTNSDKEEDEAGENK 105
             ++  H   ++  T  D    +A  NK
Sbjct:   335 YLLQHP--EKCRTEDDLRSMDA-RNK 357

GO:0008270 "zinc ion binding" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005634 "nucleus" evidence=IEA;ISS

GO:0007093 "mitotic cell cycle checkpoint" evidence=ISS

GO:0000209 "protein polyubiquitination" evidence=ISS

GO:0000166 "nucleotide binding" evidence=ISS

GO:0016605 "PML body" evidence=ISS

GO:0019941 "modification-dependent protein catabolic process" evidence=ISS

GO:0016874 "ligase activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0007067 "mitosis" evidence=IEA

UNIPROTKB|Q5FWP4 chfr "E3 ubiquitin-protein ligase CHFR" [Xenopus laevis (taxid:8355)]

 Score = 136 (52.9 bits), Expect = 5.3e-06, P = 5.3e-06
 Identities = 31/97 (31%), Positives = 48/97 (49%)

Query:     6 IPPKCPFGYDAQSF--KIGP------LSCMICQALLFECSKCTPCSHVYCKACISRFKD- 56
             +P  CP G   +S    + P      L+C+ICQ LL +C    PC H +C AC S + + 
Sbjct:   238 VPASCPIGASDESKTPSMKPDKMEETLTCIICQELLHDCVSLQPCMHTFCAACYSGWMER 297

Query:    57 ---CPLCGADIEKIEADTTLQDVVDRFIEGHARIKRS 90
                CP C   +E+I  +  L ++V+ ++  H    RS
Sbjct:   298 SSLCPTCRCPVERICKNHILNNLVEAYLIQHPEKCRS 334

GO:0000166 "nucleotide binding" evidence=ISS

GO:0000209 "protein polyubiquitination" evidence=ISS

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=ISS

GO:0007093 "mitotic cell cycle checkpoint" evidence=ISS

GO:0016605 "PML body" evidence=IDA

GO:0019941 "modification-dependent protein catabolic process" evidence=ISS

UNIPROTKB|F5GWT6 CHFR "E3 ubiquitin-protein ligase CHFR" [Homo sapiens (taxid:9606)]

 Score = 132 (51.5 bits), Expect = 5.7e-06, P = 5.7e-06
 Identities = 28/86 (32%), Positives = 46/86 (53%)

Query:    24 LSCMICQALLFECSKCTPCSHVYCKACISRFKD----CPLCGADIEKIEADTTLQDVVDR 79
             L+C+ICQ LL +C    PC H +C AC S + +    CP C   +E+I  +  L ++V+ 
Sbjct:   102 LTCIICQDLLHDCVSLQPCMHTFCAACYSGWMERSSLCPTCRCPVERICKNHILNNLVEA 161

Query:    80 FIEGHARIKRSHTNSDKEEDEAGENK 105
             ++  H    +S +  D +  +A  NK
Sbjct:   162 YLIQHP--DKSRSEEDVQSMDA-RNK 184

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|E1BBP0 CHFR "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 134 (52.2 bits), Expect = 9.7e-06, P = 9.7e-06
 Identities = 41/144 (28%), Positives = 67/144 (46%)

Query:    24 LSCMICQALLFECSKCTPCSHVYCKACISRFKD----CPLCGADIEKIEADTTLQDVVDR 79
             L+C+ICQ LL +C    PC H +C AC S + +    CP C   +E+I  +  L ++V+ 
Sbjct:   302 LTCIICQDLLHDCVSLQPCMHTFCAACYSGWMERSALCPTCRCPVERICKNHILNNLVEA 361

Query:    80 FIEGHARIKRSHTNSDKEEDEAGENKKVIYEDVSMERGAFLVQQAMRAFRAQNVESAKSR 139
             ++  H   +RS  +       A  NK  I +D+       L  +  RAF  +   S++  
Sbjct:   362 YLLQHPDKRRSEEDL---RSMAARNK--ITQDM-------LQPKVRRAFSDEE-GSSEDL 408

Query:   140 LSLCTEDIRDQIERMGNTSELCSQ 163
             L L   D+  +   +   S +C Q
Sbjct:   409 LEL--SDVDSESSDVSQPSIVCRQ 430

GO:0016605 "PML body" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0000278 "mitotic cell cycle" evidence=IEA

GO:0000209 "protein polyubiquitination" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

MGI|MGI:2444898 Chfr "checkpoint with forkhead and ring finger domains" [Mus musculus (taxid:10090)]

 Score = 133 (51.9 bits), Expect = 1.2e-05, P = 1.2e-05
 Identities = 46/166 (27%), Positives = 77/166 (46%)

Query:    24 LSCMICQALLFECSKCTPCSHVYCKACISRFKD----CPLCGADIEKIEADTTLQDVVDR 79
             L+C+ICQ LL +C    PC H +C AC S + +    CP C   +E+I  +  L ++V+ 
Sbjct:   301 LTCIICQDLLHDCVSLQPCMHTFCAACYSGWMERSSLCPTCRCPVERICKNHILNNLVEA 360

Query:    80 FIEGHARIKRSHTNSDKEEDEAGENKKVIYEDVSME--RGAFLVQQAMRA--FRAQNVES 135
             ++  H    +S +  D    +A  NK  I +D+     R +F  ++          +V+S
Sbjct:   361 YLIQHP--DKSRSEEDVRSMDA-RNK--ITQDMLQPKVRRSFSDEEGSSEDLLELSDVDS 415

Query:   136 AKSRLS----LCTEDIRDQIERMGNTSELC----SQLGAVLGMLGD 173
               S +S    +C +    +  R    S  C    S+LGA L + G+
Sbjct:   416 ESSDISQPYIVCRQC--PEYRRQAVQSLPCPVPESELGATLALGGE 459

GO:0000166 "nucleotide binding" evidence=ISO

GO:0000209 "protein polyubiquitination" evidence=ISO;IDA

GO:0000278 "mitotic cell cycle" evidence=IMP

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISO;IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=ISO

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IDA

GO:0007049 "cell cycle" evidence=IEA

GO:0007067 "mitosis" evidence=IEA

GO:0007093 "mitotic cell cycle checkpoint" evidence=ISO

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IMP

GO:0016605 "PML body" evidence=ISO

GO:0016874 "ligase activity" evidence=IEA

GO:0019941 "modification-dependent protein catabolic process" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

GO:0051301 "cell division" evidence=IEA

UNIPROTKB|Q5RF77 CHFR "E3 ubiquitin-protein ligase CHFR" [Pongo abelii (taxid:9601)]

 Score = 132 (51.5 bits), Expect = 1.3e-05, P = 1.3e-05
 Identities = 28/86 (32%), Positives = 46/86 (53%)

Query:    24 LSCMICQALLFECSKCTPCSHVYCKACISRFKD----CPLCGADIEKIEADTTLQDVVDR 79
             L+C+ICQ LL +C    PC H +C AC S + +    CP C   +E+I  +  L ++V+ 
Sbjct:   210 LTCIICQDLLHDCVSLQPCMHTFCAACYSGWMERSSLCPTCRCPVERICKNHILNNLVEA 269

Query:    80 FIEGHARIKRSHTNSDKEEDEAGENK 105
             ++  H    +S +  D +  +A  NK
Sbjct:   270 YLIQHP--DKSRSEEDVQSMDA-RNK 292

GO:0000166 "nucleotide binding" evidence=ISS

GO:0000209 "protein polyubiquitination" evidence=ISS

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0007093 "mitotic cell cycle checkpoint" evidence=ISS

GO:0016605 "PML body" evidence=ISS

GO:0019941 "modification-dependent protein catabolic process" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.3.2	0.691

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: grail3.0074014501 hypothetical protein (353 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	326
pfam13424	78	pfam13424, TPR_12, Tetratricopeptide repeat	1e-07
cd00162	45	cd00162, RING, RING-finger (Really Interesting New	8e-07
pfam13923	45	pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RI	2e-06
pfam13424	78	pfam13424, TPR_12, Tetratricopeptide repeat	1e-05
pfam13639	46	pfam13639, zf-RING_2, Ring finger domain	1e-05
smart00184	40	smart00184, RING, Ring finger	1e-05
pfam00097	40	pfam00097, zf-C3HC4, Zinc finger, C3HC4 type (RING	7e-04
TIGR00599	397	TIGR00599, rad18, DNA repair protein rad18	0.003

>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat

 Score = 48.1 bits (115), Expect = 1e-07
 Identities = 22/80 (27%), Positives = 31/80 (38%), Gaps = 4/80 (5%)

Query: 163 QLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYY 222
            L A L  L    R +GD D A+     ++E   +L  D  E        LN +  L   
Sbjct: 3   DLAAALNNLALVLRRLGDYDEALELLEKALELARELGEDHPETARA----LNNLARLYLA 58

Query: 223 GGDLQAARSYYVRSLNVRRD 242
            GD   A  Y  ++L +R  
Sbjct: 59  LGDYDEALEYLEKALALREA 78

Length = 78

>gnl|CDD|238093 cd00162, RING, RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

 Score = 44.7 bits (106), Expect = 8e-07
 Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 5/44 (11%)

Query: 26 CMICQALLFECSKCTPCSHVYCKACISRF-----KDCPLCGADI 64
          C IC     E     PC HV+C++CI ++       CPLC   I
Sbjct: 2  CPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI 45

Length = 45

>gnl|CDD|206094 pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RING finger)

 Score = 43.6 bits (103), Expect = 2e-06
 Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 4/44 (9%)

Query: 23 PLSCMICQALLFECSKCTPCSHVYCKACISRF----KDCPLCGA 62
           L C IC  LL +    TPC HV+C+ CI R+      CP+C  
Sbjct: 2  ELECPICLDLLRDPVVLTPCGHVFCRECILRYLKKKSKCPICRT 45

Length = 45

>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat

 Score = 42.4 bits (100), Expect = 1e-05
 Identities = 16/79 (20%), Positives = 37/79 (46%), Gaps = 7/79 (8%)

Query: 212 SLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSI 271
           +LN +  +    GD   A     ++L + R+  + H        + A +L  +A +  ++
Sbjct: 7   ALNNLALVLRRLGDYDEALELLEKALELARELGEDH-------PETARALNNLARLYLAL 59

Query: 272 GNEDVAVDGFQEAIKRLES 290
           G+ D A++  ++A+   E+
Sbjct: 60  GDYDEALEYLEKALALREA 78

Length = 78

>gnl|CDD|222279 pfam13639, zf-RING_2, Ring finger domain

 Score = 41.6 bits (98), Expect = 1e-05
 Identities = 14/45 (31%), Positives = 19/45 (42%), Gaps = 6/45 (13%)

Query: 25 SCMICQALLFECSKC--TPCSHVYCKACISRFKD----CPLCGAD 63
           C IC        +    PC HV+ K C+ ++      CPLC A 
Sbjct: 2  ECPICLDEFEPGEEVVVLPCGHVFHKECLDKWLRSSNTCPLCRAP 46

Length = 46

>gnl|CDD|214546 smart00184, RING, Ring finger

 Score = 41.3 bits (97), Expect = 1e-05
 Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 5/40 (12%)

Query: 26 CMICQALLFECSKCTPCSHVYCKACISRFKD-----CPLC 60
          C IC     +     PC H +C++CI ++ +     CP+C
Sbjct: 1  CPICLEEYLKDPVILPCGHTFCRSCIRKWLESGNNTCPIC 40

E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s). Length = 40

>gnl|CDD|215715 pfam00097, zf-C3HC4, Zinc finger, C3HC4 type (RING finger)

 Score = 36.7 bits (85), Expect = 7e-04
 Identities = 14/40 (35%), Positives = 17/40 (42%), Gaps = 5/40 (12%)

Query: 26 CMICQALLFECSKCTPCSHVYCKACI-----SRFKDCPLC 60
          C IC     +     PC H++C  CI     S    CPLC
Sbjct: 1  CPICLEEPKDPVTILPCGHLFCSKCILSWLESGNVTCPLC 40

The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid. Many proteins containing a RING finger play a key role in the ubiquitination pathway. Length = 40

>gnl|CDD|233043 TIGR00599, rad18, DNA repair protein rad18

 Score = 38.8 bits (90), Expect = 0.003
 Identities = 23/95 (24%), Positives = 37/95 (38%), Gaps = 22/95 (23%)

Query: 1  MDSASIPPKCPFGYDAQSFKIGPLSCMICQALLFECSKC---------TPCSHVYCKACI 51
          MD   I        D+  +   P+  +        C  C         T CSH +C  CI
Sbjct: 1  MDELDIT-------DSSDWLTTPIPSLYPLDTSLRCHICKDFFDVPVLTSCSHTFCSLCI 53

Query: 52 SRF----KDCPLCGADIE--KIEADTTLQDVVDRF 80
           R       CPLC A+ +  K+ ++  + ++V+ F
Sbjct: 54 RRCLSNQPKCPLCRAEDQESKLRSNWLVSEIVESF 88

All proteins in this family for which functions are known are involved in nucleotide excision repair.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 397

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	326
PF15227	42	zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB:	99.29
KOG4367	699	consensus Predicted Zn-finger protein [Function un	99.19
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.03
smart00504	63	Ubox Modified RING finger domain. Modified RING fi	99.0
TIGR00599	397	rad18 DNA repair protein rad18. This family is bas	98.95
PLN03208	193	E3 ubiquitin-protein ligase RMA2; Provisional	98.84
PF04564	73	U-box: U-box domain; InterPro: IPR003613 Quality c	98.81
KOG0287	442	consensus Postreplication repair protein RAD18 [Re	98.8
KOG2177	386	consensus Predicted E3 ubiquitin ligase [Posttrans	98.8
PF14835	65	zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM	98.72
PF13923	39	zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger);	98.69
KOG0317	293	consensus Predicted E3 ubiquitin ligase, integral	98.68
PHA02929	238	N1R/p28-like protein; Provisional	98.65
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.63
PF13920	50	zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger);	98.62
PF00097	41	zf-C3HC4: Zinc finger, C3HC4 type (RING finger); I	98.59
PF14634	44	zf-RING_5: zinc-RING finger domain	98.58
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	98.58
PF13639	44	zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C	98.58
KOG0320	187	consensus Predicted E3 ubiquitin ligase [Posttrans	98.54
PHA02926	242	zinc finger-like protein; Provisional	98.49
COG5432	391	RAD18 RING-finger-containing E3 ubiquitin ligase [	98.47
KOG0823	230	consensus Predicted E3 ubiquitin ligase [Posttrans	98.46
PF13445	43	zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.	98.41
cd00162	45	RING RING-finger (Really Interesting New Gene) dom	98.26
smart00184	39	RING Ring finger. E3 ubiquitin-protein ligase acti	98.22
KOG2660	331	consensus Locus-specific chromosome binding protei	98.21
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	98.19
COG5574	271	PEX10 RING-finger-containing E3 ubiquitin ligase [	98.08
TIGR00570	309	cdk7 CDK-activating kinase assembly factor MAT1. A	98.04
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.04
KOG2164	513	consensus Predicted E3 ubiquitin ligase [Posttrans	97.99
KOG0311	381	consensus Predicted E3 ubiquitin ligase [Posttrans	97.8
KOG4159	398	consensus Predicted E3 ubiquitin ligase [Posttrans	97.73
KOG0804	493	consensus Cytoplasmic Zn-finger protein BRAP2 (BRC	97.72
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.55
KOG0978	698	consensus E3 ubiquitin ligase involved in syntaxin	97.53
PF12678	73	zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766	97.52
COG5152	259	Uncharacterized conserved protein, contains RING a	97.46
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	97.45
KOG0824	324	consensus Predicted E3 ubiquitin ligase [Posttrans	97.37
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	97.37
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	97.36
KOG1813	313	consensus Predicted E3 ubiquitin ligase [Posttrans	97.19
KOG0802	543	consensus E3 ubiquitin ligase [Posttranslational m	97.15
KOG4185	296	consensus Predicted E3 ubiquitin ligase [Posttrans	97.07
COG5222	427	Uncharacterized conserved protein, contains RING Z	96.96
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	96.95
KOG2879	298	consensus Predicted E3 ubiquitin ligase [Posttrans	96.94
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	96.93
COG5243	491	HRD1 HRD ubiquitin ligase complex, ER membrane com	96.91
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	96.88
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	96.82
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	96.74
KOG4628	348	consensus Predicted E3 ubiquitin ligase [Posttrans	96.73
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	96.7
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	96.66
PF11789	57	zf-Nse: Zinc-finger of the MIZ type in Nse subunit	96.57
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	96.54
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	96.53
KOG0297	391	consensus TNF receptor-associated factor [Signal t	96.39
KOG1039	344	consensus Predicted E3 ubiquitin ligase [Posttrans	96.39
PF14447	55	Prok-RING_4: Prokaryotic RING finger family 4	96.35
COG5540	374	RING-finger-containing ubiquitin ligase [Posttrans	96.22
PRK15359	144	type III secretion system chaperone protein SscB;	96.14
PF12861	85	zf-Apc11: Anaphase-promoting complex subunit 11 RI	96.12
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	96.08
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	96.05
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	95.94
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	95.82
KOG4275	350	consensus Predicted E3 ubiquitin ligase [Posttrans	95.77
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	95.66
KOG4172	62	consensus Predicted E3 ubiquitin ligase [Posttrans	95.52
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	95.45
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	95.38
KOG0825	1134	consensus PHD Zn-finger protein [General function	95.32
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	95.17
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	95.11
PRK11189	296	lipoprotein NlpI; Provisional	95.05
KOG1002	791	consensus Nucleotide excision repair protein RAD16	94.99
KOG1785	563	consensus Tyrosine kinase negative regulator CBL [	94.96
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	94.85
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	94.8
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	94.79
KOG0553	304	consensus TPR repeat-containing protein [General f	94.71
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	94.6
KOG1126	638	consensus DNA-binding cell division cycle control	94.58
TIGR02552	135	LcrH_SycD type III secretion low calcium response	94.53
KOG3161	861	consensus Predicted E3 ubiquitin ligase [Posttrans	94.47
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	94.41
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	94.36
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	94.35
PRK11788	389	tetratricopeptide repeat protein; Provisional	94.29
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	94.28
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	94.23
KOG2003	840	consensus TPR repeat-containing protein [General f	94.22
KOG4265	349	consensus Predicted E3 ubiquitin ligase [Posttrans	94.06
KOG3002	299	consensus Zn finger protein [General function pred	93.77
KOG4739	233	consensus Uncharacterized protein involved in syna	93.67
PRK11788	389	tetratricopeptide repeat protein; Provisional	93.66
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	93.54
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	93.46
KOG1125	579	consensus TPR repeat-containing protein [General f	93.39
PRK15359	144	type III secretion system chaperone protein SscB;	93.29
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	93.26
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	93.23
KOG4555	175	consensus TPR repeat-containing protein [Function	93.2
KOG0826	357	consensus Predicted E3 ubiquitin ligase involved i	93.1
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	93.03
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	92.95
PRK10370	198	formate-dependent nitrite reductase complex subuni	92.93
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	92.88
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	92.75
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	92.64
KOG1814	445	consensus Predicted E3 ubiquitin ligase [Posttrans	92.59
KOG1734	328	consensus Predicted RING-containing E3 ubiquitin l	92.58
PF10952	140	DUF2753: Protein of unknown function (DUF2753); In	92.54
PF14570	48	zf-RING_4: RING/Ubox like zinc-binding domain; PDB	92.49
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	92.35
KOG3800	300	consensus Predicted E3 ubiquitin ligase containing	92.34
KOG4692	489	consensus Predicted E3 ubiquitin ligase [Posttrans	92.26
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	92.06
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	91.78
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	91.59
cd02682	75	MIT_AAA_Arch MIT: domain contained within Microtub	91.59
KOG2817	394	consensus Predicted E3 ubiquitin ligase [Posttrans	91.37
PF13371	73	TPR_9: Tetratricopeptide repeat	91.31
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	91.25
KOG1001	674	consensus Helicase-like transcription factor HLTF/	91.23
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	91.04
KOG3039	303	consensus Uncharacterized conserved protein [Funct	90.95
KOG2376	652	consensus Signal recognition particle, subunit Srp	90.81
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	90.78
PRK11189	296	lipoprotein NlpI; Provisional	90.75
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	90.68
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	90.38
PRK10803	263	tol-pal system protein YbgF; Provisional	90.33
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	90.28
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	90.19
PF05290	140	Baculo_IE-1: Baculovirus immediate-early protein (	90.12
PRK04841	903	transcriptional regulator MalT; Provisional	90.11
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	90.03
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	89.97
KOG1571	355	consensus Predicted E3 ubiquitin ligase [Posttrans	89.97
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	89.81
KOG1941	518	consensus Acetylcholine receptor-associated protei	89.73
KOG1129	478	consensus TPR repeat-containing protein [General f	89.61
PF07191	70	zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807	89.61
KOG1129	478	consensus TPR repeat-containing protein [General f	89.41
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	89.19
KOG1125	579	consensus TPR repeat-containing protein [General f	89.06
PRK10370	198	formate-dependent nitrite reductase complex subuni	88.98
KOG1586	288	consensus Protein required for fusion of vesicles	88.85
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	88.68
PRK04841	903	transcriptional regulator MalT; Provisional	88.57
KOG1585	308	consensus Protein required for fusion of vesicles	88.53
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	88.37
PRK12370	553	invasion protein regulator; Provisional	88.34
PF04641	260	Rtf2: Rtf2 RING-finger	88.22
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	88.17
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	88.16
KOG2932	389	consensus E3 ubiquitin ligase involved in ubiquiti	88.12
KOG0553	304	consensus TPR repeat-containing protein [General f	88.11
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	88.05
PRK12370	553	invasion protein regulator; Provisional	87.99
PRK10803	263	tol-pal system protein YbgF; Provisional	87.84
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	87.66
PF11793	70	FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.	87.59
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	87.57
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	87.32
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	87.11
PF12688	120	TPR_5: Tetratrico peptide repeat	87.1
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	86.72
COG5236	493	Uncharacterized conserved protein, contains RING Z	86.62
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	86.32
PF02891	50	zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR0041	86.26
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	85.82
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	85.71
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	85.23
KOG1126	638	consensus DNA-binding cell division cycle control	85.06
PF13428	44	TPR_14: Tetratricopeptide repeat	84.95
KOG1100	207	consensus Predicted E3 ubiquitin ligase [Posttrans	83.91
KOG2003	840	consensus TPR repeat-containing protein [General f	83.52
KOG4362	684	consensus Transcriptional regulator BRCA1 [Replica	83.42
KOG1941	518	consensus Acetylcholine receptor-associated protei	83.15
PF07800	162	DUF1644: Protein of unknown function (DUF1644); In	82.93
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	82.79
PF13371	73	TPR_9: Tetratricopeptide repeat	82.56
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	82.32
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	82.05
KOG2076	895	consensus RNA polymerase III transcription factor	81.75
COG5219	1525	Uncharacterized conserved protein, contains RING Z	81.34
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	81.1
TIGR02552	135	LcrH_SycD type III secretion low calcium response	80.98
PF04212	69	MIT: MIT (microtubule interacting and transport) d	80.66
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	80.58
KOG0827	465	consensus Predicted E3 ubiquitin ligase [Posttrans	80.56
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	80.53
smart00744	49	RINGv The RING-variant domain is a C4HC3 zinc-fing	80.4
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	80.31

>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A

Probab=99.29  E-value=6e-13  Score=81.50  Aligned_cols=34  Identities=41%  Similarity=1.176  Sum_probs=28.1

Q ss_pred             cccccccccCCCeecccCCcchHHhHhcCCC--------CCCC
Q 020453           26 CMICQALLFECSKCTPCSHVYCKACISRFKD--------CPLC   60 (326)
Q Consensus        26 C~iC~~~l~~~p~~l~C~h~fC~~Cl~~~~~--------CP~C   60 (326)
                      ||||+++ +.+|++|+|||+||+.||.++|.        ||.|
T Consensus         1 CpiC~~~-~~~Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C   42 (42)
T PF15227_consen    1 CPICLDL-FKDPVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC   42 (42)
T ss_dssp             ETTTTSB--SSEEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred             CCccchh-hCCccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence            8999999 57799999999999999998864        7776

>KOG4367 consensus Predicted Zn-finger protein [Function unknown]

Probab=99.19  E-value=2e-11  Score=108.17  Aligned_cols=62  Identities=15%  Similarity=0.056  Sum_probs=43.5

Q ss_pred             HHHHHH-HHHHHHHH------HH--HHHhCCc--hhHhhHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHH
Q 020453          159 ELCSQL-GAVLGMLG------DC--CRAMGDA--DAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLK  220 (326)
Q Consensus       159 ~~C~~H-~~~l~~~C------~~--~~~~h~~--H~~~~~~e~~~~~~~~L~~~~~~~~~~i~~~~~~l~~l~  220 (326)
                      ..|..| ++.+.+||      .|  |..+++|  |++..+-..+.-++.+|......+...-+++.+.|+.++
T Consensus       224 ~~ct~h~~e~~smyc~~ck~pvc~~clee~khs~hevkal~~~~k~hksqls~al~~lsdrak~a~e~l~~lr  296 (699)
T KOG4367|consen  224 STCTDHELENHSMYCVQCKMPVCYQCLEEGKHSSHEVKALGAMWKLHKSQLSQALNGLSDRAKEAKEFLVQLR  296 (699)
T ss_pred             hhccCCCCCCceEEEEecCChHHHHHHHhhcccchhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            578999 67888899      33  3455444  999999888888887777666556555555666665555

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.03  E-value=7.9e-09  Score=97.23  Aligned_cols=183  Identities=16%  Similarity=0.153  Sum_probs=142.5

Q ss_pred             HhhhcCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhCCchhHhhHHHHHHHHHHhCCCChhHHH
Q 020453          127 AFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEII  206 (326)
Q Consensus       127 ~~~~~~~~~a~~~~~~c~~~l~~~l~~~~~~~~~C~~H~~~l~~~C~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~~  206 (326)
                      .+.+|+++.|..-+..+-..+...     .. ..++.-...+++|+......+++.+++.+++.++.+...+.+.   ..
T Consensus       209 y~~~g~~e~A~~l~k~Al~~l~k~-----~G-~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~---~h  279 (508)
T KOG1840|consen  209 YAVQGRLEKAEPLCKQALRILEKT-----SG-LKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGE---DH  279 (508)
T ss_pred             HHHhccHHHHHHHHHHHHHHHHHc-----cC-ccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCC---CC
Confidence            345788888877665443322110     00 2233344556678888888899999999999999777665442   23


Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 020453          207 HTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIK  286 (326)
Q Consensus       207 ~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~  286 (326)
                      ..++...++|+.++...|++++|..+++++++|++........      +++..+++++.++...+++++|..+|+.+++
T Consensus       280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~------~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~  353 (508)
T KOG1840|consen  280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHP------EVAAQLSELAAILQSMNEYEEAKKLLQKALK  353 (508)
T ss_pred             HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChH------HHHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence            4567889999999999999999999999999999985554433      6889999999999999999999999999999


Q ss_pred             HHHHh--hcCCCchhHHhhccchhhhHHHHhHHhcCcccccC
Q 020453          287 RLESL--TLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRSA  326 (326)
Q Consensus       287 ~~~~l--~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (326)
                      |+...  ..++..+.+..++  +.++.++|++..+.+.|++|
T Consensus       354 i~~~~~g~~~~~~a~~~~nl--~~l~~~~gk~~ea~~~~k~a  393 (508)
T KOG1840|consen  354 IYLDAPGEDNVNLAKIYANL--AELYLKMGKYKEAEELYKKA  393 (508)
T ss_pred             HHHhhccccchHHHHHHHHH--HHHHHHhcchhHHHHHHHHH
Confidence            99876  3445567788899  99999999999999988875

>smart00504 Ubox Modified RING finger domain

Probab=99.00  E-value=2.5e-10  Score=77.22  Aligned_cols=56  Identities=14%  Similarity=0.339  Sum_probs=48.5

Q ss_pred             CcccccccccccCCCeecccCCcchHHhHhcCCC----CCCCCcccc--cccccHHHHHHHHH
Q 020453           23 PLSCMICQALLFECSKCTPCSHVYCKACISRFKD----CPLCGADIE--KIEADTTLQDVVDR   79 (326)
Q Consensus        23 ~l~C~iC~~~l~~~p~~l~C~h~fC~~Cl~~~~~----CP~Cr~~~~--~~~~n~~l~~~~~~   79 (326)
                      ++.||||.+. .++|+.++|||+||+.||..|+.    ||.|+..+.  ++..|..+++.++.
T Consensus         1 ~~~Cpi~~~~-~~~Pv~~~~G~v~~~~~i~~~~~~~~~cP~~~~~~~~~~l~~~~~l~~~i~~   62 (63)
T smart00504        1 EFLCPISLEV-MKDPVILPSGQTYERRAIEKWLLSHGTDPVTGQPLTHEDLIPNLALKSAIQE   62 (63)
T ss_pred             CcCCcCCCCc-CCCCEECCCCCEEeHHHHHHHHHHCCCCCCCcCCCChhhceeCHHHHHHHHh
Confidence            4789999999 57799999999999999998863    999999886  48888888887763

Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.

>TIGR00599 rad18 DNA repair protein rad18

Probab=98.95  E-value=4.4e-10  Score=101.88  Aligned_cols=60  Identities=35%  Similarity=0.864  Sum_probs=53.2

Q ss_pred             CCcccccccccccCCCeecccCCcchHHhHhcCC----CCCCCCcccc--cccccHHHHHHHHHHHh
Q 020453           22 GPLSCMICQALLFECSKCTPCSHVYCKACISRFK----DCPLCGADIE--KIEADTTLQDVVDRFIE   82 (326)
Q Consensus        22 ~~l~C~iC~~~l~~~p~~l~C~h~fC~~Cl~~~~----~CP~Cr~~~~--~~~~n~~l~~~~~~~~~   82 (326)
                      ..+.|+||+++ +..|++++|||+||..||..|+    .||.|+..+.  .+..|..|.++|+.|..
T Consensus        25 ~~l~C~IC~d~-~~~PvitpCgH~FCs~CI~~~l~~~~~CP~Cr~~~~~~~Lr~N~~L~~iVe~~~~   90 (397)
T TIGR00599        25 TSLRCHICKDF-FDVPVLTSCSHTFCSLCIRRCLSNQPKCPLCRAEDQESKLRSNWLVSEIVESFKN   90 (397)
T ss_pred             cccCCCcCchh-hhCccCCCCCCchhHHHHHHHHhCCCCCCCCCCccccccCccchHHHHHHHHHHH
Confidence            67899999999 5779999999999999999876    3999999887  48889999999998864

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional

Probab=98.84  E-value=1.2e-09  Score=88.48  Aligned_cols=43  Identities=33%  Similarity=0.942  Sum_probs=38.6

Q ss_pred             CCcccccccccccCCCeecccCCcchHHhHhcCC--------------------CCCCCCcccc
Q 020453           22 GPLSCMICQALLFECSKCTPCSHVYCKACISRFK--------------------DCPLCGADIE   65 (326)
Q Consensus        22 ~~l~C~iC~~~l~~~p~~l~C~h~fC~~Cl~~~~--------------------~CP~Cr~~~~   65 (326)
                      +.+.|+||++. +.+|++++|||.||+.||..|+                    .||.||..+.
T Consensus        17 ~~~~CpICld~-~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is   79 (193)
T PLN03208         17 GDFDCNICLDQ-VRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVS   79 (193)
T ss_pred             CccCCccCCCc-CCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCC
Confidence            67999999999 5789999999999999998773                    3999999887

>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis

Probab=98.81  E-value=2.6e-09  Score=74.21  Aligned_cols=61  Identities=16%  Similarity=0.389  Sum_probs=49.5

Q ss_pred             CCcccccccccccCCCeecccCCcchHHhHhcCCC-----CCCCCcccc--cccccHHHHHHHHHHHhc
Q 020453           22 GPLSCMICQALLFECSKCTPCSHVYCKACISRFKD-----CPLCGADIE--KIEADTTLQDVVDRFIEG   83 (326)
Q Consensus        22 ~~l~C~iC~~~l~~~p~~l~C~h~fC~~Cl~~~~~-----CP~Cr~~~~--~~~~n~~l~~~~~~~~~~   83 (326)
                      +.|.|||+..+ ..+|+.+++||+|++.+|+.|+.     ||.++..+.  ++.+|..|++.++.+...
T Consensus         3 ~~f~CpIt~~l-M~dPVi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~~l~pn~~Lk~~I~~~~~~   70 (73)
T PF04564_consen    3 DEFLCPITGEL-MRDPVILPSGHTYERSAIERWLEQNGGTDPFTRQPLSESDLIPNRALKSAIEEWCAE   70 (73)
T ss_dssp             GGGB-TTTSSB--SSEEEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGGGSEE-HHHHHHHHHHHHH
T ss_pred             cccCCcCcCcH-hhCceeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcccceECHHHHHHHHHHHHH
Confidence            67999999999 57799999999999999999863     999998887  489999999999998764

Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....

>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]

Probab=98.80  E-value=1.7e-09  Score=93.27  Aligned_cols=60  Identities=32%  Similarity=0.782  Sum_probs=52.5

Q ss_pred             CCcccccccccccCCCeecccCCcchHHhHhcCCC----CCCCCcccc--cccccHHHHHHHHHHHh
Q 020453           22 GPLSCMICQALLFECSKCTPCSHVYCKACISRFKD----CPLCGADIE--KIEADTTLQDVVDRFIE   82 (326)
Q Consensus        22 ~~l~C~iC~~~l~~~p~~l~C~h~fC~~Cl~~~~~----CP~Cr~~~~--~~~~n~~l~~~~~~~~~   82 (326)
                      ..|.|-||+++ |.-|+..||+|+||.-||..+..    ||.|+..+.  .+..|+.+.+|+..|..
T Consensus        22 ~lLRC~IC~ey-f~ip~itpCsHtfCSlCIR~~L~~~p~CP~C~~~~~Es~Lr~n~il~Eiv~S~~~   87 (442)
T KOG0287|consen   22 DLLRCGICFEY-FNIPMITPCSHTFCSLCIRKFLSYKPQCPTCCVTVTESDLRNNRILDEIVKSLNF   87 (442)
T ss_pred             HHHHHhHHHHH-hcCceeccccchHHHHHHHHHhccCCCCCceecccchhhhhhhhHHHHHHHHHHH
Confidence            57899999999 56699999999999999998863    999999998  48889999998887643

>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.80  E-value=4.7e-09  Score=94.94  Aligned_cols=64  Identities=28%  Similarity=0.699  Sum_probs=54.1

Q ss_pred             ccCCcccccccccccCCCeecccCCcchHHhHhcCC----CCCCCCcccccccccHHHHHHHHHHHhcc
Q 020453           20 KIGPLSCMICQALLFECSKCTPCSHVYCKACISRFK----DCPLCGADIEKIEADTTLQDVVDRFIEGH   84 (326)
Q Consensus        20 ~~~~l~C~iC~~~l~~~p~~l~C~h~fC~~Cl~~~~----~CP~Cr~~~~~~~~n~~l~~~~~~~~~~~   84 (326)
                      ..+++.|+||++. +..|++++|||+||..|+..+|    .||.||.....+..|..+.++++.+....
T Consensus        10 ~~~~~~C~iC~~~-~~~p~~l~C~H~~c~~C~~~~~~~~~~Cp~cr~~~~~~~~n~~l~~~~~~~~~~~   77 (386)
T KOG2177|consen   10 LQEELTCPICLEY-FREPVLLPCGHNFCRACLTRSWEGPLSCPVCRPPSRNLRPNVLLANLVERLRQLR   77 (386)
T ss_pred             ccccccChhhHHH-hhcCccccccchHhHHHHHHhcCCCcCCcccCCchhccCccHHHHHHHHHHHhcC
Confidence            3478999999999 5779999999999999999887    49999963336778999999999887643

>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B

Probab=98.72  E-value=1e-08  Score=67.00  Aligned_cols=55  Identities=29%  Similarity=0.803  Sum_probs=30.5

Q ss_pred             CCcccccccccccCCCee-cccCCcchHHhHhcCC--CCCCCCcccc--cccccHHHHHHH
Q 020453           22 GPLSCMICQALLFECSKC-TPCSHVYCKACISRFK--DCPLCGADIE--KIEADTTLQDVV   77 (326)
Q Consensus        22 ~~l~C~iC~~~l~~~p~~-l~C~h~fC~~Cl~~~~--~CP~Cr~~~~--~~~~n~~l~~~~   77 (326)
                      ..+.|++|.++| ..|++ -.|.|.||+.|+....  .||+|+.+.-  ++..|..+.+++
T Consensus         6 ~lLrCs~C~~~l-~~pv~l~~CeH~fCs~Ci~~~~~~~CPvC~~Paw~qD~~~NrqLd~~i   65 (65)
T PF14835_consen    6 ELLRCSICFDIL-KEPVCLGGCEHIFCSSCIRDCIGSECPVCHTPAWIQDIQINRQLDSMI   65 (65)
T ss_dssp             HTTS-SSS-S---SS-B---SSS--B-TTTGGGGTTTB-SSS--B-S-SS----HHHHHHH
T ss_pred             HhcCCcHHHHHh-cCCceeccCccHHHHHHhHHhcCCCCCCcCChHHHHHHHhhhhhhccC
Confidence            468899999995 66986 6799999999998875  4999998874  799999988764

>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A

Probab=98.69  E-value=2.6e-09  Score=64.57  Aligned_cols=34  Identities=44%  Similarity=1.184  Sum_probs=27.7

Q ss_pred             cccccccccCCC-eecccCCcchHHhHhcCC----CCCCC
Q 020453           26 CMICQALLFECS-KCTPCSHVYCKACISRFK----DCPLC   60 (326)
Q Consensus        26 C~iC~~~l~~~p-~~l~C~h~fC~~Cl~~~~----~CP~C   60 (326)
                      |+||++.+ .+| +.++|||+||..|+.+|.    .||.|
T Consensus         1 C~iC~~~~-~~~~~~~~CGH~fC~~C~~~~~~~~~~CP~C   39 (39)
T PF13923_consen    1 CPICLDEL-RDPVVVTPCGHSFCKECIEKYLEKNPKCPVC   39 (39)
T ss_dssp             ETTTTSB--SSEEEECTTSEEEEHHHHHHHHHCTSB-TTT
T ss_pred             CCCCCCcc-cCcCEECCCCCchhHHHHHHHHHCcCCCcCC
Confidence            89999994 668 689999999999998874    38876

>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.68  E-value=7.6e-09  Score=87.88  Aligned_cols=46  Identities=28%  Similarity=0.793  Sum_probs=40.6

Q ss_pred             cccCCcccccccccccCCCeecccCCcchHHhHhcCCC----CCCCCcccc
Q 020453           19 FKIGPLSCMICQALLFECSKCTPCSHVYCKACISRFKD----CPLCGADIE   65 (326)
Q Consensus        19 ~~~~~l~C~iC~~~l~~~p~~l~C~h~fC~~Cl~~~~~----CP~Cr~~~~   65 (326)
                      +......|.+|++. ..+|..+||||.||..||..|..    ||.||..+.
T Consensus       235 i~~a~~kC~LCLe~-~~~pSaTpCGHiFCWsCI~~w~~ek~eCPlCR~~~~  284 (293)
T KOG0317|consen  235 IPEATRKCSLCLEN-RSNPSATPCGHIFCWSCILEWCSEKAECPLCREKFQ  284 (293)
T ss_pred             CCCCCCceEEEecC-CCCCCcCcCcchHHHHHHHHHHccccCCCcccccCC
Confidence            44466899999999 78899999999999999999963    999998876

>PHA02929 N1R/p28-like protein; Provisional

Probab=98.65  E-value=5.1e-09  Score=88.65  Aligned_cols=50  Identities=26%  Similarity=0.727  Sum_probs=39.7

Q ss_pred             cCCcccccccccccCCC-------eecccCCcchHHhHhcCCC----CCCCCccccccccc
Q 020453           21 IGPLSCMICQALLFECS-------KCTPCSHVYCKACISRFKD----CPLCGADIEKIEAD   70 (326)
Q Consensus        21 ~~~l~C~iC~~~l~~~p-------~~l~C~h~fC~~Cl~~~~~----CP~Cr~~~~~~~~n   70 (326)
                      .+...|+||++.+..++       +..+|+|.||..||.+|..    ||.||..+..+..+
T Consensus       172 ~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~~~~v~~~  232 (238)
T PHA02929        172 SKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTPFISVIKS  232 (238)
T ss_pred             CCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCCCEeeEEeee
Confidence            35689999999855533       5678999999999999863    99999988754443

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.63  E-value=2.9e-07  Score=64.90  Aligned_cols=76  Identities=18%  Similarity=0.321  Sum_probs=64.8

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 020453          208 TLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR  287 (326)
Q Consensus       208 ~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~  287 (326)
                      .+.....+++.+...++++++|+.+|++++++ .+.....      ..+++.++.++|.++..+|++++|++++++++++
T Consensus         3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~~~~~~------~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i   75 (78)
T PF13424_consen    3 DTANAYNNLARVYRELGRYDEALDYYEKALDI-EEQLGDD------HPDTANTLNNLGECYYRLGDYEEALEYYQKALDI   75 (78)
T ss_dssp             HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-HHHTTTH------HHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHHCCC------CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            45678899999999999999999999999999 5444432      2357899999999999999999999999999999


Q ss_pred             HHH
Q 020453          288 LES  290 (326)
Q Consensus       288 ~~~  290 (326)
                      .+.
T Consensus        76 ~~k   78 (78)
T PF13424_consen   76 FEK   78 (78)
T ss_dssp             HHH
T ss_pred             hcC
Confidence            863

...

>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A

Probab=98.62  E-value=9e-09  Score=65.95  Aligned_cols=43  Identities=35%  Similarity=0.839  Sum_probs=35.6

Q ss_pred             CCcccccccccccCCCeecccCCc-chHHhHhcC----CCCCCCCcccc
Q 020453           22 GPLSCMICQALLFECSKCTPCSHV-YCKACISRF----KDCPLCGADIE   65 (326)
Q Consensus        22 ~~l~C~iC~~~l~~~p~~l~C~h~-fC~~Cl~~~----~~CP~Cr~~~~   65 (326)
                      ++..|+||++. ..+++.+||||. ||..|+.+|    ..||.||+.+.
T Consensus         1 ~~~~C~iC~~~-~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~   48 (50)
T PF13920_consen    1 EDEECPICFEN-PRDVVLLPCGHLCFCEECAERLLKRKKKCPICRQPIE   48 (50)
T ss_dssp             -HSB-TTTSSS-BSSEEEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-S
T ss_pred             CcCCCccCCcc-CCceEEeCCCChHHHHHHhHHhcccCCCCCcCChhhc
Confidence            35789999999 577999999999 999999999    45999998865

...

>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.59  E-value=8.1e-09  Score=63.24  Aligned_cols=34  Identities=41%  Similarity=1.205  Sum_probs=29.5

Q ss_pred             cccccccccCCCe-ecccCCcchHHhHhcCCC------CCCC
Q 020453           26 CMICQALLFECSK-CTPCSHVYCKACISRFKD------CPLC   60 (326)
Q Consensus        26 C~iC~~~l~~~p~-~l~C~h~fC~~Cl~~~~~------CP~C   60 (326)
                      |+||++. +..|+ +++|||+||..|+.+|+.      ||.|
T Consensus         1 C~iC~~~-~~~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C   41 (41)
T PF00097_consen    1 CPICLEP-FEDPVILLPCGHSFCRDCLRKWLENSGSVKCPLC   41 (41)
T ss_dssp             ETTTSSB-CSSEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred             CCcCCcc-ccCCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence            8999999 56688 999999999999988753      8876

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....

>PF14634 zf-RING_5: zinc-RING finger domain

Probab=98.58  E-value=3.2e-08  Score=61.42  Aligned_cols=38  Identities=32%  Similarity=0.981  Sum_probs=32.4

Q ss_pred             ccccccccc--cCCCeecccCCcchHHhHhcCC----CCCCCCc
Q 020453           25 SCMICQALL--FECSKCTPCSHVYCKACISRFK----DCPLCGA   62 (326)
Q Consensus        25 ~C~iC~~~l--~~~p~~l~C~h~fC~~Cl~~~~----~CP~Cr~   62 (326)
                      .|++|+..+  ...|+.++|||+||..|+..+.    .||.|++
T Consensus         1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~~~~~~CP~C~k   44 (44)
T PF14634_consen    1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLKGKSVKCPICRK   44 (44)
T ss_pred             CCcCcCccccCCCCeEEcccCCHHHHHHHHhhcCCCCCCcCCCC
Confidence            489999984  2359999999999999999887    5999985

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=98.58  E-value=8.6e-07  Score=83.66  Aligned_cols=140  Identities=16%  Similarity=0.124  Sum_probs=110.5

Q ss_pred             HHHHHhCCchhHhhHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCc
Q 020453          173 DCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPS  252 (326)
Q Consensus       173 ~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~  252 (326)
                      ..+...+++..++++.+.+.+...+..+   -....++...++++.++.+++++.+|+..|++++++++...+....   
T Consensus       207 ~~y~~~g~~e~A~~l~k~Al~~l~k~~G---~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~---  280 (508)
T KOG1840|consen  207 EMYAVQGRLEKAEPLCKQALRILEKTSG---LKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP---  280 (508)
T ss_pred             HHHHHhccHHHHHHHHHHHHHHHHHccC---ccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH---
Confidence            4555678888888888888877555444   1244566677789999999999999999999999999999988776   


Q ss_pred             hhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh--hcCCCchhHHhhccchhhhHHHHhHHhcCccc
Q 020453          253 QVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL--TLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKF  323 (326)
Q Consensus       253 ~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l--~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (326)
                         .++..+++|+.+|..+|++++|..++++|++|.+.+  ..+|+.+..+.++  +.++...+.+-.+..+|
T Consensus       281 ---~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~--~~~~~~~~~~Eea~~l~  348 (508)
T KOG1840|consen  281 ---AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSEL--AAILQSMNEYEEAKKLL  348 (508)
T ss_pred             ---HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHH--HHHHHHhcchhHHHHHH
Confidence               679999999999999999999999999999999997  5566666666665  55555555555444443

>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A

Probab=98.58  E-value=6.6e-09  Score=64.65  Aligned_cols=37  Identities=35%  Similarity=0.886  Sum_probs=30.9

Q ss_pred             cccccccccc--CCCeecccCCcchHHhHhcCC----CCCCCC
Q 020453           25 SCMICQALLF--ECSKCTPCSHVYCKACISRFK----DCPLCG   61 (326)
Q Consensus        25 ~C~iC~~~l~--~~p~~l~C~h~fC~~Cl~~~~----~CP~Cr   61 (326)
                      .|+||++.+.  ..++.++|||.||..||.+|+    .||.||
T Consensus         2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~~~CP~CR   44 (44)
T PF13639_consen    2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRNNSCPVCR   44 (44)
T ss_dssp             CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred             CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhCCcCCccC
Confidence            5999999853  358889999999999999996    399997

...

>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.54  E-value=3.6e-08  Score=77.82  Aligned_cols=43  Identities=35%  Similarity=0.828  Sum_probs=36.1

Q ss_pred             CCcccccccccccCC--CeecccCCcchHHhHhcCC----CCCCCCcccc
Q 020453           22 GPLSCMICQALLFEC--SKCTPCSHVYCKACISRFK----DCPLCGADIE   65 (326)
Q Consensus        22 ~~l~C~iC~~~l~~~--p~~l~C~h~fC~~Cl~~~~----~CP~Cr~~~~   65 (326)
                      +.+.||||++- +..  |+...|||.||+.||....    .||+|++.+.
T Consensus       130 ~~~~CPiCl~~-~sek~~vsTkCGHvFC~~Cik~alk~~~~CP~C~kkIt  178 (187)
T KOG0320|consen  130 GTYKCPICLDS-VSEKVPVSTKCGHVFCSQCIKDALKNTNKCPTCRKKIT  178 (187)
T ss_pred             cccCCCceecc-hhhccccccccchhHHHHHHHHHHHhCCCCCCcccccc
Confidence            56899999997 453  7889999999999998875    3999998655

>PHA02926 zinc finger-like protein; Provisional

Probab=98.49  E-value=3.8e-08  Score=80.61  Aligned_cols=50  Identities=24%  Similarity=0.753  Sum_probs=39.1

Q ss_pred             cCCcccccccccccCC--------CeecccCCcchHHhHhcCCC----------CCCCCccccccccc
Q 020453           21 IGPLSCMICQALLFEC--------SKCTPCSHVYCKACISRFKD----------CPLCGADIEKIEAD   70 (326)
Q Consensus        21 ~~~l~C~iC~~~l~~~--------p~~l~C~h~fC~~Cl~~~~~----------CP~Cr~~~~~~~~n   70 (326)
                      ..+..|+||++..+..        ++..+|+|+||..||..|..          ||.||..+..+.++
T Consensus       168 SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~I~pS  235 (242)
T PHA02926        168 SKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFRNITMS  235 (242)
T ss_pred             cCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceeeeeccc
Confidence            3578999999975442        45679999999999999852          99999988754433

>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]

Probab=98.47  E-value=7.2e-08  Score=81.62  Aligned_cols=59  Identities=25%  Similarity=0.673  Sum_probs=48.9

Q ss_pred             CcccccccccccCCCeecccCCcchHHhHhcCCC----CCCCCcccc--cccccHHHHHHHHHHHh
Q 020453           23 PLSCMICQALLFECSKCTPCSHVYCKACISRFKD----CPLCGADIE--KIEADTTLQDVVDRFIE   82 (326)
Q Consensus        23 ~l~C~iC~~~l~~~p~~l~C~h~fC~~Cl~~~~~----CP~Cr~~~~--~~~~n~~l~~~~~~~~~   82 (326)
                      .+.|-||..+| .-|...+|||+||.-||.++..    ||.||....  .++.+..+..+++.+..
T Consensus        25 ~lrC~IC~~~i-~ip~~TtCgHtFCslCIR~hL~~qp~CP~Cr~~~~esrlr~~s~~~ei~es~~~   89 (391)
T COG5432          25 MLRCRICDCRI-SIPCETTCGHTFCSLCIRRHLGTQPFCPVCREDPCESRLRGSSGSREINESHAR   89 (391)
T ss_pred             HHHhhhhhhee-ecceecccccchhHHHHHHHhcCCCCCccccccHHhhhcccchhHHHHHHhhhh
Confidence            57899999994 6699999999999999999864    999999887  36677777777766543

>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.46  E-value=5.4e-08  Score=80.38  Aligned_cols=45  Identities=31%  Similarity=0.829  Sum_probs=40.2

Q ss_pred             ccCCcccccccccccCCCeecccCCcchHHhHhcCCC-------CCCCCcccc
Q 020453           20 KIGPLSCMICQALLFECSKCTPCSHVYCKACISRFKD-------CPLCGADIE   65 (326)
Q Consensus        20 ~~~~l~C~iC~~~l~~~p~~l~C~h~fC~~Cl~~~~~-------CP~Cr~~~~   65 (326)
                      .-..+.|.||++. -.+||...|||-||..||-+|..       ||+|+..+.
T Consensus        44 ~~~~FdCNICLd~-akdPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs   95 (230)
T KOG0823|consen   44 DGGFFDCNICLDL-AKDPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVS   95 (230)
T ss_pred             CCCceeeeeeccc-cCCCEEeecccceehHHHHHHHhhcCCCeeCCccccccc
Confidence            3467899999999 68899999999999999999963       999998887

>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A

Probab=98.41  E-value=5.9e-08  Score=59.34  Aligned_cols=28  Identities=36%  Similarity=1.108  Sum_probs=18.7

Q ss_pred             cccccccccCC----CeecccCCcchHHhHhcCC
Q 020453           26 CMICQALLFEC----SKCTPCSHVYCKACISRFK   55 (326)
Q Consensus        26 C~iC~~~l~~~----p~~l~C~h~fC~~Cl~~~~   55 (326)
                      ||||.+ + ..    |+.|+|||+||+.||.+++
T Consensus         1 CpIc~e-~-~~~~n~P~~L~CGH~~c~~cl~~l~   32 (43)
T PF13445_consen    1 CPICKE-F-STEENPPMVLPCGHVFCKDCLQKLS   32 (43)
T ss_dssp             -TTT------TTSS-EEE-SSS-EEEHHHHHHHH
T ss_pred             CCcccc-c-cCCCCCCEEEeCccHHHHHHHHHHH
Confidence            899999 3 55    9999999999999998763

>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

Probab=98.26  E-value=3e-07  Score=57.16  Aligned_cols=38  Identities=34%  Similarity=0.967  Sum_probs=30.9

Q ss_pred             ccccccccccCCCeecc-cCCcchHHhHhcCC-----CCCCCCcc
Q 020453           25 SCMICQALLFECSKCTP-CSHVYCKACISRFK-----DCPLCGAD   63 (326)
Q Consensus        25 ~C~iC~~~l~~~p~~l~-C~h~fC~~Cl~~~~-----~CP~Cr~~   63 (326)
                      .|+||.+.+ ..++.++ |||.||..|+..|+     .||.|+..
T Consensus         1 ~C~iC~~~~-~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~   44 (45)
T cd00162           1 ECPICLEEF-REPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTP   44 (45)
T ss_pred             CCCcCchhh-hCceEecCCCChhcHHHHHHHHHhCcCCCCCCCCc
Confidence            599999995 5566665 99999999998764     49999875

>smart00184 RING Ring finger

Probab=98.22  E-value=4.6e-07  Score=54.28  Aligned_cols=34  Identities=35%  Similarity=1.145  Sum_probs=29.5

Q ss_pred             cccccccccCCCeecccCCcchHHhHhcCCC-----CCCC
Q 020453           26 CMICQALLFECSKCTPCSHVYCKACISRFKD-----CPLC   60 (326)
Q Consensus        26 C~iC~~~l~~~p~~l~C~h~fC~~Cl~~~~~-----CP~C   60 (326)
                      |+||++. ...++.++|||.||..|+..|+.     ||.|
T Consensus         1 C~iC~~~-~~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C   39 (39)
T smart00184        1 CPICLEE-LKDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC   39 (39)
T ss_pred             CCcCccC-CCCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence            7899999 57799999999999999987743     8876

E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)

>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]

Probab=98.21  E-value=3.1e-07  Score=79.69  Aligned_cols=63  Identities=37%  Similarity=0.888  Sum_probs=52.2

Q ss_pred             CCcccccccccccCCCeecccCCcchHHhHhcCCC----CCCCCccccc------ccccHHHHHHHHHHHhcc
Q 020453           22 GPLSCMICQALLFECSKCTPCSHVYCKACISRFKD----CPLCGADIEK------IEADTTLQDVVDRFIEGH   84 (326)
Q Consensus        22 ~~l~C~iC~~~l~~~p~~l~C~h~fC~~Cl~~~~~----CP~Cr~~~~~------~~~n~~l~~~~~~~~~~~   84 (326)
                      ...+|.+|..+|.+.-.+..|.||||++||.+++.    ||.|...+..      +..+..|+.++.++..+.
T Consensus        14 ~~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~~~~CP~C~i~ih~t~pl~ni~~DrtlqdiVyKLVPgl   86 (331)
T KOG2660|consen   14 PHITCRLCGGYLIDATTITECLHTFCKSCIVKYLEESKYCPTCDIVIHKTHPLLNIRSDRTLQDIVYKLVPGL   86 (331)
T ss_pred             cceehhhccceeecchhHHHHHHHHHHHHHHHHHHHhccCCccceeccCccccccCCcchHHHHHHHHHcchH
Confidence            67899999999766555567999999999988763    9999988763      677889999998886654

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=98.19  E-value=6.6e-06  Score=77.39  Aligned_cols=70  Identities=20%  Similarity=0.416  Sum_probs=56.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHhCCchhHhhHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 020453          159 ELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLN  238 (326)
Q Consensus       159 ~~C~~H~~~l~~~C~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~  238 (326)
                      ..|+.|...+..++....+.++-..++.++..+.+.-           ...+..-++++.+.+++|.+++|+..|.+++.
T Consensus       348 ~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~-----------p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr  416 (966)
T KOG4626|consen  348 RLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVF-----------PEFAAAHNNLASIYKQQGNLDDAIMCYKEALR  416 (966)
T ss_pred             HhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhC-----------hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh
Confidence            6799999999999999988888888888887766543           33455778888888888888888888888877


Q ss_pred             H
Q 020453          239 V  239 (326)
Q Consensus       239 ~  239 (326)
                      |
T Consensus       417 I  417 (966)
T KOG4626|consen  417 I  417 (966)
T ss_pred             c
Confidence            5

>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.08  E-value=1.2e-06  Score=73.67  Aligned_cols=44  Identities=34%  Similarity=0.954  Sum_probs=37.2

Q ss_pred             cCCcccccccccccCCCeecccCCcchHHhHhcCC-----C-CCCCCcccc
Q 020453           21 IGPLSCMICQALLFECSKCTPCSHVYCKACISRFK-----D-CPLCGADIE   65 (326)
Q Consensus        21 ~~~l~C~iC~~~l~~~p~~l~C~h~fC~~Cl~~~~-----~-CP~Cr~~~~   65 (326)
                      +....|+||++. ...|..++|||.||..||-..|     . ||.||..+.
T Consensus       213 ~~d~kC~lC~e~-~~~ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~  262 (271)
T COG5574         213 LADYKCFLCLEE-PEVPSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVY  262 (271)
T ss_pred             ccccceeeeecc-cCCcccccccchhhHHHHHHHHHhhccccCchhhhhcc
Confidence            457889999999 4669999999999999998833     2 999997654

>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1

Probab=98.04  E-value=2.3e-06  Score=74.78  Aligned_cols=44  Identities=20%  Similarity=0.671  Sum_probs=34.8

Q ss_pred             CCcccccccccccCCCe---e-cccCCcchHHhHhcCCC-----CCCCCcccc
Q 020453           22 GPLSCMICQALLFECSK---C-TPCSHVYCKACISRFKD-----CPLCGADIE   65 (326)
Q Consensus        22 ~~l~C~iC~~~l~~~p~---~-l~C~h~fC~~Cl~~~~~-----CP~Cr~~~~   65 (326)
                      ++..||+|...-+..|.   . -+|||+||.+|+...|.     ||.|+..+.
T Consensus         2 d~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lr   54 (309)
T TIGR00570         2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLR   54 (309)
T ss_pred             CCCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccc
Confidence            45789999994344454   2 27999999999999763     999998887

All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.04  E-value=2.6e-06  Score=59.95  Aligned_cols=69  Identities=23%  Similarity=0.249  Sum_probs=59.3

Q ss_pred             hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh-hcCCCchhHHhhccchhhhHHHHhHHhcCcccccC
Q 020453          256 DVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL-TLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRSA  326 (326)
Q Consensus       256 ~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (326)
                      +++..++++|.++..+|++++|+++|++++++.+.+ ..+|..+.+..++  +.++..+|++.+++.+|++|
T Consensus         3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l--g~~~~~~g~~~~A~~~~~~a   72 (78)
T PF13424_consen    3 DTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNL--GECYYRLGDYEEALEYYQKA   72 (78)
T ss_dssp             HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHH--HHHHHHTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH--HHHHHHcCCHHHHHHHHHHH
Confidence            578899999999999999999999999999996665 4455667788999  99999999999999988764

...

>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.99  E-value=1.8e-06  Score=79.34  Aligned_cols=42  Identities=31%  Similarity=0.876  Sum_probs=36.6

Q ss_pred             CcccccccccccCCCeecccCCcchHHhHhcCCC---------CCCCCcccc
Q 020453           23 PLSCMICQALLFECSKCTPCSHVYCKACISRFKD---------CPLCGADIE   65 (326)
Q Consensus        23 ~l~C~iC~~~l~~~p~~l~C~h~fC~~Cl~~~~~---------CP~Cr~~~~   65 (326)
                      ...||||+.. ..-|+...|||.||..||..+|.         ||.|+..+.
T Consensus       186 ~~~CPICL~~-~~~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~  236 (513)
T KOG2164|consen  186 DMQCPICLEP-PSVPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTIT  236 (513)
T ss_pred             CCcCCcccCC-CCcccccccCceeeHHHHHHHHhhhcccCCccCCchhhhcc
Confidence            7889999999 45588888999999999988873         999998876

>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.80  E-value=2.1e-06  Score=75.08  Aligned_cols=61  Identities=23%  Similarity=0.600  Sum_probs=45.6

Q ss_pred             CCcccccccccccCCCeecccCCcchHHhHhcCC-----CCCCCCccccc---ccccHHHHHHHHHHHh
Q 020453           22 GPLSCMICQALLFECSKCTPCSHVYCKACISRFK-----DCPLCGADIEK---IEADTTLQDVVDRFIE   82 (326)
Q Consensus        22 ~~l~C~iC~~~l~~~p~~l~C~h~fC~~Cl~~~~-----~CP~Cr~~~~~---~~~n~~l~~~~~~~~~   82 (326)
                      .++.||||+.+|.....+-.|+|.||..||-..+     .||.||+...+   +..+..+-.|+.++..
T Consensus        42 ~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~SkrsLr~Dp~fdaLis~i~~  110 (381)
T KOG0311|consen   42 IQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSKRSLRIDPNFDALISKIYP  110 (381)
T ss_pred             hhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhccccccCCCCccHHHHHHHHhc
Confidence            5799999999976656666799999999996554     39999998873   5555555555555444

>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.73  E-value=1.8e-05  Score=72.27  Aligned_cols=63  Identities=29%  Similarity=0.840  Sum_probs=48.3

Q ss_pred             cCCcccccccccccCCCeecccCCcchHHhHhcCC----CCCCCCccccccc-------ccHHHHHHHHHHHhcc
Q 020453           21 IGPLSCMICQALLFECSKCTPCSHVYCKACISRFK----DCPLCGADIEKIE-------ADTTLQDVVDRFIEGH   84 (326)
Q Consensus        21 ~~~l~C~iC~~~l~~~p~~l~C~h~fC~~Cl~~~~----~CP~Cr~~~~~~~-------~n~~l~~~~~~~~~~~   84 (326)
                      ..+|.|-||...|+. |+++||||+||..||.+..    .||.||..+..+.       .|+....++.+|....
T Consensus        82 ~sef~c~vc~~~l~~-pv~tpcghs~c~~Cl~r~ld~~~~cp~Cr~~l~e~~~~~~~~~~~r~~~~li~~F~~~~  155 (398)
T KOG4159|consen   82 RSEFECCVCSRALYP-PVVTPCGHSFCLECLDRSLDQETECPLCRDELVELPALEQALSLNRLLCKLITKFLEGS  155 (398)
T ss_pred             cchhhhhhhHhhcCC-CccccccccccHHHHHHHhccCCCCcccccccccchHHHHHHHHHHHHHHHHHHhhhhh
Confidence            468999999999654 9999999999999987654    3999999988422       2555556676666543

>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]

Probab=97.72  E-value=0.00011  Score=66.49  Aligned_cols=44  Identities=20%  Similarity=0.561  Sum_probs=35.9

Q ss_pred             cCCcccccccccccCCC---eecccCCcchHHhHhcCCC--CCCCCccc
Q 020453           21 IGPLSCMICQALLFECS---KCTPCSHVYCKACISRFKD--CPLCGADI   64 (326)
Q Consensus        21 ~~~l~C~iC~~~l~~~p---~~l~C~h~fC~~Cl~~~~~--CP~Cr~~~   64 (326)
                      .+.-+||||++.+-..-   +++.|.|+|=..|+..||.  ||+||...
T Consensus       173 tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~~scpvcR~~q  221 (493)
T KOG0804|consen  173 TELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWDSSCPVCRYCQ  221 (493)
T ss_pred             ccCCCcchhHhhcCccccceeeeecccccchHHHhhcccCcChhhhhhc
Confidence            36779999999853332   6789999999999999985  99999653

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.55  E-value=0.0008  Score=59.72  Aligned_cols=137  Identities=15%  Similarity=0.186  Sum_probs=92.4

Q ss_pred             HHHHHhCCchhHhhHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCc
Q 020453          173 DCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPS  252 (326)
Q Consensus       173 ~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~  252 (326)
                      .+....++...+...+..+.+...+++..     ........+.+.+.... ++++|+..|++++++..+...       
T Consensus        43 ~~fk~~~~~~~A~~ay~kAa~~~~~~~~~-----~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~-------  109 (282)
T PF14938_consen   43 NCFKLAKDWEKAAEAYEKAADCYEKLGDK-----FEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGR-------  109 (282)
T ss_dssp             HHHHHTT-CHHHHHHHHHHHHHHHHTT-H-----HHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT--------
T ss_pred             HHHHHHhccchhHHHHHHHHHHHHHcCCH-----HHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCc-------
Confidence            44456677788888888877777765542     22334445566666555 999999999999998765322       


Q ss_pred             hhhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHhhcCCCchhHHhhccchhhhHHHHhHHhcCccccc
Q 020453          253 QVLDVAVSLAKVADVDRSI-GNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRS  325 (326)
Q Consensus       253 ~~~~la~~l~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (326)
                       ....+..+.++|.+++.. |++++|+++|++|.++++.-...-....+..++  +.++..++++.++...|++
T Consensus       110 -~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~--A~l~~~l~~y~~A~~~~e~  180 (282)
T PF14938_consen  110 -FSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKA--ADLYARLGRYEEAIEIYEE  180 (282)
T ss_dssp             -HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH--HHHHHHTT-HHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHH--HHHHHHhCCHHHHHHHHHH
Confidence             224578899999999999 999999999999999998742111123355566  6666777777777666643

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]

Probab=97.53  E-value=1.6e-05  Score=76.63  Aligned_cols=43  Identities=30%  Similarity=0.827  Sum_probs=38.0

Q ss_pred             CCcccccccccccCCCeecccCCcchHHhHhcCC-----CCCCCCcccc
Q 020453           22 GPLSCMICQALLFECSKCTPCSHVYCKACISRFK-----DCPLCGADIE   65 (326)
Q Consensus        22 ~~l~C~iC~~~l~~~p~~l~C~h~fC~~Cl~~~~-----~CP~Cr~~~~   65 (326)
                      +.|+||+|..- +.+-++..|||.||..|+.+..     .||.|...|.
T Consensus       642 ~~LkCs~Cn~R-~Kd~vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFg  689 (698)
T KOG0978|consen  642 ELLKCSVCNTR-WKDAVITKCGHVFCEECVQTRYETRQRKCPKCNAAFG  689 (698)
T ss_pred             hceeCCCccCc-hhhHHHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCC
Confidence            57899999988 5668999999999999998875     3999999887

>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.52  E-value=2.6e-05  Score=53.96  Aligned_cols=37  Identities=38%  Similarity=0.933  Sum_probs=28.5

Q ss_pred             ccccccccccCC------------CeecccCCcchHHhHhcCCC----CCCCC
Q 020453           25 SCMICQALLFEC------------SKCTPCSHVYCKACISRFKD----CPLCG   61 (326)
Q Consensus        25 ~C~iC~~~l~~~------------p~~l~C~h~fC~~Cl~~~~~----CP~Cr   61 (326)
                      .|+||++.|.+.            .+..+|||.|-..||.+|..    ||.||
T Consensus        21 ~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR   73 (73)
T PF12678_consen   21 NCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNNTCPLCR   73 (73)
T ss_dssp             BETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred             cccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCCcCCCCC
Confidence            499999985221            24458999999999999964    99997

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....

>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]

Probab=97.46  E-value=5.2e-05  Score=60.99  Aligned_cols=53  Identities=30%  Similarity=0.679  Sum_probs=40.5

Q ss_pred             CcccccccccccCCCeecccCCcchHHhHhcCCC----CCCCCccccc-ccccHHHHHH
Q 020453           23 PLSCMICQALLFECSKCTPCSHVYCKACISRFKD----CPLCGADIEK-IEADTTLQDV   76 (326)
Q Consensus        23 ~l~C~iC~~~l~~~p~~l~C~h~fC~~Cl~~~~~----CP~Cr~~~~~-~~~n~~l~~~   76 (326)
                      .|.|-||... |..|+...|||+||..|..+...    |-.|.+.+.. +.+...+..+
T Consensus       196 PF~C~iCKkd-y~spvvt~CGH~FC~~Cai~~y~kg~~C~~Cgk~t~G~f~V~~d~~km  253 (259)
T COG5152         196 PFLCGICKKD-YESPVVTECGHSFCSLCAIRKYQKGDECGVCGKATYGRFWVVSDLQKM  253 (259)
T ss_pred             ceeehhchhh-ccchhhhhcchhHHHHHHHHHhccCCcceecchhhccceeHHhhHHHH
Confidence            5789999999 67799999999999999976653    8888887664 3333333333

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=97.45  E-value=0.001  Score=63.21  Aligned_cols=64  Identities=23%  Similarity=0.425  Sum_probs=53.6

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 020453          210 SVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR  287 (326)
Q Consensus       210 ~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~  287 (326)
                      +.+.++++.++..++.++.|...|.++++..-              +.+...+|||.++..+|++++|+..|++++.|
T Consensus       354 adam~NLgni~~E~~~~e~A~~ly~~al~v~p--------------~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI  417 (966)
T KOG4626|consen  354 ADAMNNLGNIYREQGKIEEATRLYLKALEVFP--------------EFAAAHNNLASIYKQQGNLDDAIMCYKEALRI  417 (966)
T ss_pred             HHHHHHHHHHHHHhccchHHHHHHHHHHhhCh--------------hhhhhhhhHHHHHHhcccHHHHHHHHHHHHhc
Confidence            45778999999999999999999999887643              34567788999999999999999999988876

>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.37  E-value=8.9e-05  Score=63.77  Aligned_cols=43  Identities=28%  Similarity=0.682  Sum_probs=37.1

Q ss_pred             CcccccccccccCCCeecccCCcchHHhHhcCC-----CCCCCCccccc
Q 020453           23 PLSCMICQALLFECSKCTPCSHVYCKACISRFK-----DCPLCGADIEK   66 (326)
Q Consensus        23 ~l~C~iC~~~l~~~p~~l~C~h~fC~~Cl~~~~-----~CP~Cr~~~~~   66 (326)
                      .-.|+||+.. -..|+.++|+|-||.-||....     .|++||.++.+
T Consensus         7 ~~eC~IC~nt-~n~Pv~l~C~HkFCyiCiKGsy~ndk~~CavCR~pids   54 (324)
T KOG0824|consen    7 KKECLICYNT-GNCPVNLYCFHKFCYICIKGSYKNDKKTCAVCRFPIDS   54 (324)
T ss_pred             CCcceeeecc-CCcCccccccchhhhhhhcchhhcCCCCCceecCCCCc
Confidence            3469999999 5779999999999999998763     29999999984

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=97.37  E-value=0.00034  Score=63.23  Aligned_cols=126  Identities=16%  Similarity=0.215  Sum_probs=85.2

Q ss_pred             HhhHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHH
Q 020453          184 AVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAK  263 (326)
Q Consensus       184 ~~~~~e~~~~~~~~L~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~  263 (326)
                      ++.++.+-+++.++++...     ..-....++|..++-+|++.+|+...+.-+.|.++..++..+        ....+|
T Consensus       174 Av~fy~eNL~l~~~lgDr~-----aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAae--------RRA~sN  240 (639)
T KOG1130|consen  174 AVKFYMENLELSEKLGDRL-----AQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAE--------RRAHSN  240 (639)
T ss_pred             HHHHHHHHHHHHHHhhhHH-----hhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHH--------HHhhcc
Confidence            3444444444444444322     123455678888888899999999998888888887666543        466788


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHhhccchhhhHHHHhHHhcCcccc
Q 020453          264 VADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFR  324 (326)
Q Consensus       264 l~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (326)
                      ||..+.-+|+++.|+++|+.++.+-.++.+.-..+..-..+  +..|..+..+-++++||+
T Consensus       241 lgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSL--gNtytll~e~~kAI~Yh~  299 (639)
T KOG1130|consen  241 LGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSL--GNTYTLLKEVQKAITYHQ  299 (639)
T ss_pred             cchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHh--hhHHHHHHHHHHHHHHHH
Confidence            88888888888888888888888877773222223333445  666677777777777765

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=97.36  E-value=0.00048  Score=41.65  Aligned_cols=38  Identities=29%  Similarity=0.378  Sum_probs=28.9

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh--hcCC
Q 020453          258 AVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL--TLKP  295 (326)
Q Consensus       258 a~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l--~~~p  295 (326)
                      +.++++||.++..+|++++|+.++++++.+.+++  ..+|
T Consensus         2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~G~~Hp   41 (42)
T PF13374_consen    2 ASALNNLANAYRAQGRYEEALELLEEALEIRERLLGPDHP   41 (42)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH---------
T ss_pred             HHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHhccccc
Confidence            6789999999999999999999999999999998  4455

>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.19  E-value=0.00024  Score=61.00  Aligned_cols=51  Identities=25%  Similarity=0.711  Sum_probs=40.8

Q ss_pred             CcccccccccccCCCeecccCCcchHHhHhcCCC----CCCCCccccc-ccccHHHH
Q 020453           23 PLSCMICQALLFECSKCTPCSHVYCKACISRFKD----CPLCGADIEK-IEADTTLQ   74 (326)
Q Consensus        23 ~l~C~iC~~~l~~~p~~l~C~h~fC~~Cl~~~~~----CP~Cr~~~~~-~~~n~~l~   74 (326)
                      .+.|-||... |.+||...|+|+||..|....+.    |++|.+.+.. +.+...|.
T Consensus       241 Pf~c~icr~~-f~~pVvt~c~h~fc~~ca~~~~qk~~~c~vC~~~t~g~~~~akeL~  296 (313)
T KOG1813|consen  241 PFKCFICRKY-FYRPVVTKCGHYFCEVCALKPYQKGEKCYVCSQQTHGSFNVAKELL  296 (313)
T ss_pred             Cccccccccc-cccchhhcCCceeehhhhccccccCCcceecccccccccchHHHHH
Confidence            4679999999 56699999999999999987754    9999998874 44444443

>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.15  E-value=9.5e-05  Score=71.57  Aligned_cols=43  Identities=28%  Similarity=0.789  Sum_probs=37.8

Q ss_pred             CCcccccccccccCC----CeecccCCcchHHhHhcCCC----CCCCCccc
Q 020453           22 GPLSCMICQALLFEC----SKCTPCSHVYCKACISRFKD----CPLCGADI   64 (326)
Q Consensus        22 ~~l~C~iC~~~l~~~----p~~l~C~h~fC~~Cl~~~~~----CP~Cr~~~   64 (326)
                      ....|+||.+.+...    |+.++|+|.|+..|+..|+.    ||.||..+
T Consensus       290 ~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er~qtCP~CR~~~  340 (543)
T KOG0802|consen  290 SDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFERQQTCPTCRTVL  340 (543)
T ss_pred             cCCeeeeechhhccccccccceeecccchHHHHHHHHHHHhCcCCcchhhh
Confidence            467899999997665    89999999999999999974    99999844

>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.07  E-value=0.026  Score=50.46  Aligned_cols=58  Identities=22%  Similarity=0.596  Sum_probs=45.1

Q ss_pred             CcccccccccccCC-----CeecccCCcchHHhHhcCC-----CCCCCCcccc-------cccccHHHHHHHHHH
Q 020453           23 PLSCMICQALLFEC-----SKCTPCSHVYCKACISRFK-----DCPLCGADIE-------KIEADTTLQDVVDRF   80 (326)
Q Consensus        23 ~l~C~iC~~~l~~~-----p~~l~C~h~fC~~Cl~~~~-----~CP~Cr~~~~-------~~~~n~~l~~~~~~~   80 (326)
                      .+.|-||.+.+-..     |+.|.|||+||..|+....     .||.||....       .+..|+.+...++..
T Consensus         3 ~~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~~~~~~~~~~l~kNf~ll~~~~~~   77 (296)
T KOG4185|consen    3 FPECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGNSRILCPFCRETTEIPDGDVKSLQKNFALLQAIEHM   77 (296)
T ss_pred             CCceeecCccccccCcccCCcccccCceehHhHHHHHhcCceeeccCCCCcccCCchhHhhhhhhHHHHHHHHHH
Confidence            46788888763222     9999999999999998774     3999999854       377788887777765

>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=96.96  E-value=0.001  Score=57.09  Aligned_cols=60  Identities=27%  Similarity=0.641  Sum_probs=44.8

Q ss_pred             CCcccccccccccCCCeec-ccCCcchHHhHhcC-----CCCCCCCcc---cccccccHHHHHHHHHHHh
Q 020453           22 GPLSCMICQALLFECSKCT-PCSHVYCKACISRF-----KDCPLCGAD---IEKIEADTTLQDVVDRFIE   82 (326)
Q Consensus        22 ~~l~C~iC~~~l~~~p~~l-~C~h~fC~~Cl~~~-----~~CP~Cr~~---~~~~~~n~~l~~~~~~~~~   82 (326)
                      -.|.||+|..+|.. |... .|+|.||..||...     +.||.|...   +..+.++...+..|+.+..
T Consensus       273 i~LkCplc~~Llrn-p~kT~cC~~~fc~eci~~al~dsDf~CpnC~rkdvlld~l~pD~dk~~EvE~~lk  341 (427)
T COG5222         273 ISLKCPLCHCLLRN-PMKTPCCGHTFCDECIGTALLDSDFKCPNCSRKDVLLDGLTPDIDKKLEVEKALK  341 (427)
T ss_pred             ccccCcchhhhhhC-cccCccccchHHHHHHhhhhhhccccCCCcccccchhhccCccHHHHHHHHHHHH
Confidence            34999999999766 5555 79999999999854     459999863   3356777766666666544

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=96.95  E-value=0.043  Score=44.44  Aligned_cols=112  Identities=20%  Similarity=0.286  Sum_probs=79.2

Q ss_pred             HHHHHHHhCCchhHhhHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCC
Q 020453          171 LGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNV  250 (326)
Q Consensus       171 ~C~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~  250 (326)
                      .+.+....++.-.+...+..+....    +..    .....+..+++.+....+++++|+..|++++++.       +..
T Consensus        41 ~g~~~~~~g~~~~A~~~~~~al~l~----~~~----~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-------~~~  105 (168)
T CHL00033         41 DGMSAQSEGEYAEALQNYYEAMRLE----IDP----YDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-------PFL  105 (168)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcc----ccc----hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------cCc
Confidence            3455555677777776666555442    111    1123467889999999999999999999998762       232


Q ss_pred             CchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh-hcCCCc
Q 020453          251 PSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL-TLKPEE  297 (326)
Q Consensus       251 ~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l-~~~p~~  297 (326)
                      ......++..+.+++..+..+|+++.|+..+++++..++.. ...|++
T Consensus       106 ~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~  153 (168)
T CHL00033        106 PQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGN  153 (168)
T ss_pred             HHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCccc
Confidence            33344566666777777779999999999999999999887 556654

>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.94  E-value=0.00063  Score=57.85  Aligned_cols=46  Identities=30%  Similarity=0.818  Sum_probs=37.0

Q ss_pred             ccCCcccccccccccCCCeecc-cCCcchHHhHhcCC------CCCCCCccccc
Q 020453           20 KIGPLSCMICQALLFECSKCTP-CSHVYCKACISRFK------DCPLCGADIEK   66 (326)
Q Consensus        20 ~~~~l~C~iC~~~l~~~p~~l~-C~h~fC~~Cl~~~~------~CP~Cr~~~~~   66 (326)
                      .....+||+|.+. .+-|.+.- |||.||..|+....      .||.|......
T Consensus       236 ~t~~~~C~~Cg~~-PtiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~~  288 (298)
T KOG2879|consen  236 GTSDTECPVCGEP-PTIPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVEP  288 (298)
T ss_pred             ccCCceeeccCCC-CCCCeeeccccceeehhhhhhhhcchhhcccCccCCCCcc
Confidence            3467899999999 67676654 99999999997653      39999988764

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=96.93  E-value=0.013  Score=58.06  Aligned_cols=99  Identities=13%  Similarity=0.054  Sum_probs=53.4

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 020453          212 SLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL  291 (326)
Q Consensus       212 ~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l  291 (326)
                      ....++.+....|++++|+..|++++++....       ......+...++.....+...|++++|++.+++++.+    
T Consensus       469 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~-------~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l----  537 (615)
T TIGR00990       469 VYNYYGELLLDQNKFDEAIEKFDTAIELEKET-------KPMYMNVLPLINKALALFQWKQDFIEAENLCEKALII----  537 (615)
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHhcCCcc-------ccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc----
Confidence            45667888888899999999999988763221       0011112222233333444456666666555555432    


Q ss_pred             hcCCCchhHHhhccchhhhHHHHhHHhcCccccc
Q 020453          292 TLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRS  325 (326)
Q Consensus       292 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (326)
                        +|+.......+  +.++..+|++.+++..|++
T Consensus       538 --~p~~~~a~~~l--a~~~~~~g~~~eAi~~~e~  567 (615)
T TIGR00990       538 --DPECDIAVATM--AQLLLQQGDVDEALKLFER  567 (615)
T ss_pred             --CCCcHHHHHHH--HHHHHHccCHHHHHHHHHH
Confidence              34443334444  5555555555555555543

>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]

Probab=96.91  E-value=0.00028  Score=62.34  Aligned_cols=49  Identities=24%  Similarity=0.711  Sum_probs=40.1

Q ss_pred             CCcccCCcccccccccccCC------------CeecccCCcchHHhHhcCCC----CCCCCcccc
Q 020453           17 QSFKIGPLSCMICQALLFEC------------SKCTPCSHVYCKACISRFKD----CPLCGADIE   65 (326)
Q Consensus        17 ~~~~~~~l~C~iC~~~l~~~------------p~~l~C~h~fC~~Cl~~~~~----CP~Cr~~~~   65 (326)
                      ..+..++-+|.||.+-++-.            |+.|||||.+=..|+..|..    ||.||.++.
T Consensus       281 eql~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERqQTCPICr~p~i  345 (491)
T COG5243         281 EQLTNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQQTCPICRRPVI  345 (491)
T ss_pred             hhhcCCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhccCCCcccCccc
Confidence            33455778999999975554            49999999999999999974    999999854

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=96.88  E-value=0.07  Score=47.30  Aligned_cols=96  Identities=21%  Similarity=0.351  Sum_probs=72.3

Q ss_pred             CCchhHhhHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhH
Q 020453          179 GDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYG-GDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDV  257 (326)
Q Consensus       179 h~~H~~~~~~e~~~~~~~~L~~~~~~~~~~i~~~~~~l~~l~~~~-~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~l  257 (326)
                      .+...++...+.+.+...+.+.     ....+....+++++.... +++++|+..|++++++.+....        ....
T Consensus        88 ~~~~~Ai~~~~~A~~~y~~~G~-----~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~--------~~~a  154 (282)
T PF14938_consen   88 GDPDEAIECYEKAIEIYREAGR-----FSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGS--------PHSA  154 (282)
T ss_dssp             TTHHHHHHHHHHHHHHHHHCT------HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT---------HHHH
T ss_pred             hCHHHHHHHHHHHHHHHHhcCc-----HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC--------hhhH
Confidence            3667788888888877776665     344567888999999888 9999999999999998775321        1245


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 020453          258 AVSLAKVADVDRSIGNEDVAVDGFQEAIKR  287 (326)
Q Consensus       258 a~~l~~l~~~~~~~~~~~~a~~~~~~~~~~  287 (326)
                      ...+.+++.++..+|+|++|++.|++....
T Consensus       155 ~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~  184 (282)
T PF14938_consen  155 AECLLKAADLYARLGRYEEAIEIYEEVAKK  184 (282)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            677889999999999999999999877654

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=96.82  E-value=0.0085  Score=40.56  Aligned_cols=63  Identities=17%  Similarity=0.389  Sum_probs=53.3

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHH
Q 020453          211 VSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIG-NEDVAVDGFQEAIKR  287 (326)
Q Consensus       211 ~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~-~~~~a~~~~~~~~~~  287 (326)
                      .....+|.+....+++++|+..|.+++++-       +       +-+..+.++|.++..+| ++++|++.+++++++
T Consensus         4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-------p-------~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l   67 (69)
T PF13414_consen    4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELD-------P-------NNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL   67 (69)
T ss_dssp             HHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-------T-------THHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-------C-------CCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence            456788999999999999999999998872       2       23557889999999999 799999999998875

...

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=96.74  E-value=0.012  Score=53.50  Aligned_cols=127  Identities=17%  Similarity=0.145  Sum_probs=87.9

Q ss_pred             CCchhHhhHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHH
Q 020453          179 GDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVA  258 (326)
Q Consensus       179 h~~H~~~~~~e~~~~~~~~L~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la  258 (326)
                      |+...++-..+..+++.++.+.     +.....+..+|+....-+++++.|+++|...+.+..++.++..+        |
T Consensus       209 Gdf~~ai~~H~~RL~ia~efGD-----rAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vE--------A  275 (639)
T KOG1130|consen  209 GDFDQAIHFHKLRLEIAQEFGD-----RAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVE--------A  275 (639)
T ss_pred             ccHHHHHHHHHHHHHHHHHhhh-----HHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHH--------H
Confidence            4445555555555566555554     22234567789999988999999999999999988887776644        4


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh-hcCCCchhHHhhccchhhhHHHHhHHhcCc
Q 020453          259 VSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL-TLKPEEAGLEQRCWNSSTTNFQKNHLNQLP  321 (326)
Q Consensus       259 ~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (326)
                      .+--.||..|..+.++++|++|+++-+.|-++| ..-++   +..-|.=+..++.++.+.+++-
T Consensus       276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe---~RacwSLgna~~alg~h~kAl~  336 (639)
T KOG1130|consen  276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGE---LRACWSLGNAFNALGEHRKALY  336 (639)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh---HHHHHHHHHHHHhhhhHHHHHH
Confidence            555567888888889999999999999999988 43332   1211111455666777766653

>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.73  E-value=0.00058  Score=60.99  Aligned_cols=41  Identities=37%  Similarity=0.862  Sum_probs=35.2

Q ss_pred             cccccccccccCC---CeecccCCcchHHhHhcCCC-----CCCCCcccc
Q 020453           24 LSCMICQALLFEC---SKCTPCSHVYCKACISRFKD-----CPLCGADIE   65 (326)
Q Consensus        24 l~C~iC~~~l~~~---p~~l~C~h~fC~~Cl~~~~~-----CP~Cr~~~~   65 (326)
                      .+|.||++. |..   -+.|||.|.|=..||..|..     ||.|+....
T Consensus       230 ~~CaIClEd-Y~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~  278 (348)
T KOG4628|consen  230 DTCAICLED-YEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIR  278 (348)
T ss_pred             ceEEEeecc-cccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcCC
Confidence            599999998 453   57799999999999999963     999998776

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=96.70  E-value=0.02  Score=56.67  Aligned_cols=120  Identities=17%  Similarity=0.227  Sum_probs=63.9

Q ss_pred             HHHHHHhCCchhHhhHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 020453          172 GDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVP  251 (326)
Q Consensus       172 C~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~  251 (326)
                      +.+....++...+...++.+.+.    .+...       .....++.+....|++++|+..|++++++.       +.+ 
T Consensus       372 a~~~~~~g~~~eA~~~~~~al~~----~p~~~-------~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-------P~~-  432 (615)
T TIGR00990       372 ASMNLELGDPDKAEEDFDKALKL----NSEDP-------DIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-------PDF-  432 (615)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHh----CCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-------ccC-
Confidence            34444555666666555554332    22222       234567777777888888888888876642       111 


Q ss_pred             chhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHhhccchhhhHHHHhHHhcCcccc
Q 020453          252 SQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFR  324 (326)
Q Consensus       252 ~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (326)
                            ...+.++|.++..+|++++|+..|++++.+      .|.++.+...+  +.++..+|++.+++..|+
T Consensus       433 ------~~~~~~la~~~~~~g~~~eA~~~~~~al~~------~P~~~~~~~~l--g~~~~~~g~~~~A~~~~~  491 (615)
T TIGR00990       433 ------IFSHIQLGVTQYKEGSIASSMATFRRCKKN------FPEAPDVYNYY--GELLLDQNKFDEAIEKFD  491 (615)
T ss_pred             ------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------CCCChHHHHHH--HHHHHHccCHHHHHHHHH
Confidence                  123445566666666666666666555432      34444444444  444444444444444443

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=96.66  E-value=0.016  Score=47.02  Aligned_cols=68  Identities=16%  Similarity=0.219  Sum_probs=55.0

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 020453          209 LSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR  287 (326)
Q Consensus       209 i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~  287 (326)
                      .......++.+....+++++|+..|.+++.+..     .+      .+.+.++.++|.++..+|++++|+..+++++.+
T Consensus        34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~-----~~------~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~  101 (168)
T CHL00033         34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEI-----DP------YDRSYILYNIGLIHTSNGEHTKALEYYFQALER  101 (168)
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccc-----cc------hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            345567788888999999999999999988731     11      123557889999999999999999999988865

>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C

Probab=96.57  E-value=0.0011  Score=43.33  Aligned_cols=37  Identities=30%  Similarity=0.570  Sum_probs=26.1

Q ss_pred             CCcccccccccccCCCee-cccCCcchHHhHhcCCC------CCC
Q 020453           22 GPLSCMICQALLFECSKC-TPCSHVYCKACISRFKD------CPL   59 (326)
Q Consensus        22 ~~l~C~iC~~~l~~~p~~-l~C~h~fC~~Cl~~~~~------CP~   59 (326)
                      -.+.|||.+.. +.+|+. ..|||+|.+..|..+..      ||.
T Consensus        10 ~~~~CPiT~~~-~~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv   53 (57)
T PF11789_consen   10 ISLKCPITLQP-FEDPVKSKKCGHTFEKEAILQYIQRNGSKRCPV   53 (57)
T ss_dssp             --SB-TTTSSB--SSEEEESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred             eccCCCCcCCh-hhCCcCcCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence            45899999999 577877 58999999999998872      887

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=96.54  E-value=0.0075  Score=35.28  Aligned_cols=31  Identities=16%  Similarity=0.356  Sum_probs=26.4

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 020453          260 SLAKVADVDRSIGNEDVAVDGFQEAIKRLES  290 (326)
Q Consensus       260 ~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  290 (326)
                      ++.+||.++..+|++++|+++|++++.+-+.
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~   31 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALALARD   31 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence            4788999999999999999999999876654

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=96.53  E-value=0.091  Score=42.78  Aligned_cols=113  Identities=21%  Similarity=0.295  Sum_probs=77.7

Q ss_pred             HHHHHHHHhCCchhHhhHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCC
Q 020453          170 MLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSN  249 (326)
Q Consensus       170 ~~C~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~  249 (326)
                      ..+......++...+...++.+......    ..    ........++.+....|++++|+..|.+++++.       +.
T Consensus        40 ~lg~~~~~~g~~~~A~~~~~~al~~~~~----~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-------p~  104 (172)
T PRK02603         40 RDGMSAQADGEYAEALENYEEALKLEED----PN----DRSYILYNMGIIYASNGEHDKALEYYHQALELN-------PK  104 (172)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHhhc----cc----hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------cc
Confidence            3345555678888888887766654221    10    123456789999999999999999999988752       23


Q ss_pred             CCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh-hcCCCc
Q 020453          250 VPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL-TLKPEE  297 (326)
Q Consensus       250 ~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l-~~~p~~  297 (326)
                      .......++..+..++......|+++.|+..|+++++.+++. ..+|++
T Consensus       105 ~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~  153 (172)
T PRK02603        105 QPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN  153 (172)
T ss_pred             cHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence            333333445555555556666678899999999999999888 666765

>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]

Probab=96.39  E-value=0.0025  Score=58.97  Aligned_cols=43  Identities=30%  Similarity=0.807  Sum_probs=36.7

Q ss_pred             CCcccccccccccCCCee-cccCCcchHHhHhcCCC----CCCCCcccc
Q 020453           22 GPLSCMICQALLFECSKC-TPCSHVYCKACISRFKD----CPLCGADIE   65 (326)
Q Consensus        22 ~~l~C~iC~~~l~~~p~~-l~C~h~fC~~Cl~~~~~----CP~Cr~~~~   65 (326)
                      +.+.|++|..++ .+|+. ..|||.||..|+..|..    ||.|+....
T Consensus        20 ~~l~C~~C~~vl-~~p~~~~~cgh~fC~~C~~~~~~~~~~cp~~~~~~~   67 (391)
T KOG0297|consen   20 ENLLCPICMSVL-RDPVQTTTCGHRFCAGCLLESLSNHQKCPVCRQELT   67 (391)
T ss_pred             ccccCccccccc-cCCCCCCCCCCcccccccchhhccCcCCcccccccc
Confidence            569999999996 55777 59999999999999864    999987766

>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.39  E-value=0.0015  Score=58.71  Aligned_cols=45  Identities=29%  Similarity=0.798  Sum_probs=36.2

Q ss_pred             ccCCcccccccccccCCCe-----e---cccCCcchHHhHhcCC-----------CCCCCCcccc
Q 020453           20 KIGPLSCMICQALLFECSK-----C---TPCSHVYCKACISRFK-----------DCPLCGADIE   65 (326)
Q Consensus        20 ~~~~l~C~iC~~~l~~~p~-----~---l~C~h~fC~~Cl~~~~-----------~CP~Cr~~~~   65 (326)
                      ...+..|-||.+.... +.     .   .+|-|+||..||..|.           .||.||....
T Consensus       158 ~s~~k~CGICme~i~e-k~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~  221 (344)
T KOG1039|consen  158 KSSEKECGICMETINE-KAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSS  221 (344)
T ss_pred             ccccccceehhhhccc-cchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccc
Confidence            3568899999998544 43     2   5699999999999995           2999998776

>PF14447 Prok-RING_4: Prokaryotic RING finger family 4

Probab=96.35  E-value=0.002  Score=41.01  Aligned_cols=43  Identities=28%  Similarity=0.866  Sum_probs=34.1

Q ss_pred             CCcccccccccccCCCeecccCCcchHHhHhc--CCCCCCCCcccc
Q 020453           22 GPLSCMICQALLFECSKCTPCSHVYCKACISR--FKDCPLCGADIE   65 (326)
Q Consensus        22 ~~l~C~iC~~~l~~~p~~l~C~h~fC~~Cl~~--~~~CP~Cr~~~~   65 (326)
                      .+..|-.|... ....+.+||||..|..|...  +..||.|..++.
T Consensus         6 ~~~~~~~~~~~-~~~~~~~pCgH~I~~~~f~~~rYngCPfC~~~~~   50 (55)
T PF14447_consen    6 PEQPCVFCGFV-GTKGTVLPCGHLICDNCFPGERYNGCPFCGTPFE   50 (55)
T ss_pred             cceeEEEcccc-ccccccccccceeeccccChhhccCCCCCCCccc
Confidence            34567777777 56689999999999999854  456999998875

>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.22  E-value=0.0017  Score=56.05  Aligned_cols=43  Identities=26%  Similarity=0.824  Sum_probs=35.3

Q ss_pred             CcccccccccccC--CCeecccCCcchHHhHhcCC-----CCCCCCcccc
Q 020453           23 PLSCMICQALLFE--CSKCTPCSHVYCKACISRFK-----DCPLCGADIE   65 (326)
Q Consensus        23 ~l~C~iC~~~l~~--~p~~l~C~h~fC~~Cl~~~~-----~CP~Cr~~~~   65 (326)
                      ...|.||+.-+..  .-+.+||.|.|=..|+..|.     +||+||..++
T Consensus       323 GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iP  372 (374)
T COG5540         323 GVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIP  372 (374)
T ss_pred             CceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCC
Confidence            4789999986433  25679999999999999996     4999998765

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=96.14  E-value=0.011  Score=46.81  Aligned_cols=89  Identities=10%  Similarity=0.010  Sum_probs=57.0

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcC
Q 020453          215 KIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLK  294 (326)
Q Consensus       215 ~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~  294 (326)
                      ..+......|++++|...|.+++.+       .+.       ....+.++|.++..+|++++|+..|++++.      .+
T Consensus        29 ~~g~~~~~~g~~~~A~~~~~~al~~-------~P~-------~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~------l~   88 (144)
T PRK15359         29 ASGYASWQEGDYSRAVIDFSWLVMA-------QPW-------SWRAHIALAGTWMMLKEYTTAINFYGHALM------LD   88 (144)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHc-------CCC-------cHHHHHHHHHHHHHHhhHHHHHHHHHHHHh------cC
Confidence            3466667788888888888876543       222       234556677777777777777777776654      24


Q ss_pred             CCchhHHhhccchhhhHHHHhHHhcCccccc
Q 020453          295 PEEAGLEQRCWNSSTTNFQKNHLNQLPKFRS  325 (326)
Q Consensus       295 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (326)
                      |.++....++  +..+..+|+...+...|.+
T Consensus        89 p~~~~a~~~l--g~~l~~~g~~~eAi~~~~~  117 (144)
T PRK15359         89 ASHPEPVYQT--GVCLKMMGEPGLAREAFQT  117 (144)
T ss_pred             CCCcHHHHHH--HHHHHHcCCHHHHHHHHHH
Confidence            5555666666  6666666666666655543

>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger

Probab=96.12  E-value=0.0026  Score=44.69  Aligned_cols=28  Identities=29%  Similarity=0.758  Sum_probs=23.1

Q ss_pred             eecccCCcchHHhHhcCCC-------CCCCCcccc
Q 020453           38 KCTPCSHVYCKACISRFKD-------CPLCGADIE   65 (326)
Q Consensus        38 ~~l~C~h~fC~~Cl~~~~~-------CP~Cr~~~~   65 (326)
                      +.-.|+|.|=..||.+|..       ||.||+...
T Consensus        48 v~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~   82 (85)
T PF12861_consen   48 VWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWK   82 (85)
T ss_pred             eeccCccHHHHHHHHHHHccccCCCCCCCcCCeee
Confidence            3447999999999999963       999998753

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=96.08  E-value=0.11  Score=43.26  Aligned_cols=28  Identities=18%  Similarity=0.067  Sum_probs=16.3

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 020453          260 SLAKVADVDRSIGNEDVAVDGFQEAIKR  287 (326)
Q Consensus       260 ~l~~l~~~~~~~~~~~~a~~~~~~~~~~  287 (326)
                      .+..++.++...|++++|...+++++.+
T Consensus       171 ~~~~la~~~~~~~~~~~A~~~~~~~~~~  198 (234)
T TIGR02521       171 SLLELAELYYLRGQYKDARAYLERYQQT  198 (234)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            3445566666666666666666655443

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=96.05  E-value=0.0085  Score=56.39  Aligned_cols=100  Identities=16%  Similarity=0.243  Sum_probs=72.0

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 020453          211 VSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLES  290 (326)
Q Consensus       211 ~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  290 (326)
                      ..++.+|-+.+..+.+.+|..+|+.+++..+++.....       -..-.++|||-++..++.+++|+.+|++++.... 
T Consensus       415 lv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~-------~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~-  486 (611)
T KOG1173|consen  415 LVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKI-------FWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSP-  486 (611)
T ss_pred             hhhhhhhheeehHhhhHHHHHHHHHHHHHhhhcccccc-------chhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCC-
Confidence            35678888888899999999999999976665444332       2355789999999999999999999998886542 


Q ss_pred             hhcCCCchhHHhhccchhhhHHHHhHHhcCccccc
Q 020453          291 LTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRS  325 (326)
Q Consensus       291 l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (326)
                           .++.+-..+  +-++..+|+..+|..+|.+
T Consensus       487 -----k~~~~~asi--g~iy~llgnld~Aid~fhK  514 (611)
T KOG1173|consen  487 -----KDASTHASI--GYIYHLLGNLDKAIDHFHK  514 (611)
T ss_pred             -----CchhHHHHH--HHHHHHhcChHHHHHHHHH
Confidence                 233333334  5555666666666666554

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=95.94  E-value=0.071  Score=43.40  Aligned_cols=67  Identities=21%  Similarity=0.269  Sum_probs=53.5

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 020453          210 SVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR  287 (326)
Q Consensus       210 ~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~  287 (326)
                      ......++......+++++|+..|++++++...     ..      +.+..+.++|.++..+|++++|+..|++++.+
T Consensus        35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~-----~~------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  101 (172)
T PRK02603         35 AFVYYRDGMSAQADGEYAEALENYEEALKLEED-----PN------DRSYILYNMGIIYASNGEHDKALEYYHQALEL  101 (172)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhc-----cc------hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            445678888889999999999999999876432     11      12456788999999999999999999988875

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=95.82  E-value=0.061  Score=50.88  Aligned_cols=97  Identities=21%  Similarity=0.283  Sum_probs=73.3

Q ss_pred             HHHHHhCCchhHhhHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCc
Q 020453          173 DCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPS  252 (326)
Q Consensus       173 ~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~  252 (326)
                      .+........++..++..+++....+..+...|..    ..++||-+...++.+++|+.+|+++|.+..+          
T Consensus       422 vvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p----~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k----------  487 (611)
T KOG1173|consen  422 VVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEP----TLNNLGHAYRKLNKYEEAIDYYQKALLLSPK----------  487 (611)
T ss_pred             heeehHhhhHHHHHHHHHHHHHhhhccccccchhH----HHHhHHHHHHHHhhHHHHHHHHHHHHHcCCC----------
Confidence            33334455577777777777555555554444433    5689999999999999999999999876332          


Q ss_pred             hhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 020453          253 QVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR  287 (326)
Q Consensus       253 ~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~  287 (326)
                          -+.+...+|.++..+|+.++|+++|.+++.+
T Consensus       488 ----~~~~~asig~iy~llgnld~Aid~fhKaL~l  518 (611)
T KOG1173|consen  488 ----DASTHASIGYIYHLLGNLDKAIDHFHKALAL  518 (611)
T ss_pred             ----chhHHHHHHHHHHHhcChHHHHHHHHHHHhc
Confidence                1457788999999999999999999998865

>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.77  E-value=0.0022  Score=55.04  Aligned_cols=42  Identities=29%  Similarity=0.681  Sum_probs=36.0

Q ss_pred             CcccccccccccCCCeecccCCcc-hHHhHhcCCCCCCCCcccc
Q 020453           23 PLSCMICQALLFECSKCTPCSHVY-CKACISRFKDCPLCGADIE   65 (326)
Q Consensus        23 ~l~C~iC~~~l~~~p~~l~C~h~f-C~~Cl~~~~~CP~Cr~~~~   65 (326)
                      .-.|.||.+. ..+=+.|+|||.. |..|-.+...||.||+-+.
T Consensus       300 ~~LC~ICmDa-P~DCvfLeCGHmVtCt~CGkrm~eCPICRqyi~  342 (350)
T KOG4275|consen  300 RRLCAICMDA-PRDCVFLECGHMVTCTKCGKRMNECPICRQYIV  342 (350)
T ss_pred             HHHHHHHhcC-CcceEEeecCcEEeehhhccccccCchHHHHHH
Confidence            5679999999 6779999999954 9999999889999997543

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=95.66  E-value=0.011  Score=39.91  Aligned_cols=61  Identities=16%  Similarity=0.158  Sum_probs=50.1

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHhhccchhhhHHHH-hHHhcCcccccC
Q 020453          258 AVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQK-NHLNQLPKFRSA  326 (326)
Q Consensus       258 a~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  326 (326)
                      +..+..+|..+...|++++|+..|++++.+      +|+++.+..++  +..+..++ +..+++.+|++|
T Consensus         3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~------~p~~~~~~~~~--g~~~~~~~~~~~~A~~~~~~a   64 (69)
T PF13414_consen    3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIEL------DPNNAEAYYNL--GLAYMKLGKDYEEAIEDFEKA   64 (69)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHHHHH------STTHHHHHHHH--HHHHHHTTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------CCCCHHHHHHH--HHHHHHhCccHHHHHHHHHHH
Confidence            566788999999999999999999988875      57777788888  88888888 788888777653

...

>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.52  E-value=0.0013  Score=41.40  Aligned_cols=41  Identities=39%  Similarity=0.743  Sum_probs=33.6

Q ss_pred             cccccccccccCCCeecccCC-cchHHhHhcCCC-----CCCCCcccc
Q 020453           24 LSCMICQALLFECSKCTPCSH-VYCKACISRFKD-----CPLCGADIE   65 (326)
Q Consensus        24 l~C~iC~~~l~~~p~~l~C~h-~fC~~Cl~~~~~-----CP~Cr~~~~   65 (326)
                      -.|.||.+- ..+.+..-||| -+|..|-.+.|.     ||.||.++.
T Consensus         8 dECTICye~-pvdsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~   54 (62)
T KOG4172|consen    8 DECTICYEH-PVDSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPIK   54 (62)
T ss_pred             cceeeeccC-cchHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHHH
Confidence            469999998 56689999999 458889877764     999998765

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=95.45  E-value=0.034  Score=32.42  Aligned_cols=30  Identities=37%  Similarity=0.637  Sum_probs=25.9

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 020453          213 LNKIGDLKYYGGDLQAARSYYVRSLNVRRD  242 (326)
Q Consensus       213 ~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~  242 (326)
                      ..+|+.+...+|++++|+.+|++++.+.++
T Consensus         2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~   31 (36)
T PF13176_consen    2 LNNLGRIYRQQGDYEKAIEYYEQALALARD   31 (36)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence            468999999999999999999999977665

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=95.38  E-value=0.095  Score=43.76  Aligned_cols=90  Identities=17%  Similarity=0.139  Sum_probs=46.1

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCC
Q 020453          216 IGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKP  295 (326)
Q Consensus       216 l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~p  295 (326)
                      ++.+....+++++|+..|+++++.       .+.       ....+.+++.++...|++++|++.+++++...    ..+
T Consensus        71 la~~~~~~~~~~~A~~~~~~al~~-------~~~-------~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~----~~~  132 (234)
T TIGR02521        71 LALYYQQLGELEKAEDSFRRALTL-------NPN-------NGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDP----LYP  132 (234)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhh-------CCC-------CHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc----ccc
Confidence            344444455555555555555443       111       11344556666666677777776666665421    123


Q ss_pred             CchhHHhhccchhhhHHHHhHHhcCccccc
Q 020453          296 EEAGLEQRCWNSSTTNFQKNHLNQLPKFRS  325 (326)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (326)
                      ....+..++  +..+...++..++...|++
T Consensus       133 ~~~~~~~~l--~~~~~~~g~~~~A~~~~~~  160 (234)
T TIGR02521       133 QPARSLENA--GLCALKAGDFDKAEKYLTR  160 (234)
T ss_pred             cchHHHHHH--HHHHHHcCCHHHHHHHHHH
Confidence            333344444  5555555566666555543

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>KOG0825 consensus PHD Zn-finger protein [General function prediction only]

Probab=95.32  E-value=0.0013  Score=63.67  Aligned_cols=45  Identities=16%  Similarity=0.459  Sum_probs=33.8

Q ss_pred             CCcccccccccccCC--CeecccCCcchHHhHhcCCC----CCCCCccccc
Q 020453           22 GPLSCMICQALLFEC--SKCTPCSHVYCKACISRFKD----CPLCGADIEK   66 (326)
Q Consensus        22 ~~l~C~iC~~~l~~~--p~~l~C~h~fC~~Cl~~~~~----CP~Cr~~~~~   66 (326)
                      .+-.||+|+..+.+.  -.-.+|+|.||..|+..|-.    ||.||..|..
T Consensus       122 ~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~aqTCPiDR~EF~~  172 (1134)
T KOG0825|consen  122 VENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRCAQTCPVDRGEFGE  172 (1134)
T ss_pred             hhhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhhcccCchhhhhhhe
Confidence            355789888763332  22347999999999999963    9999999984

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=95.17  E-value=0.21  Score=33.08  Aligned_cols=58  Identities=16%  Similarity=0.227  Sum_probs=43.1

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 020453          216 IGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR  287 (326)
Q Consensus       216 l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~  287 (326)
                      ++......|++++|+..|++.++       ..+.       -...+..+|.++..+|++++|+.+|++++++
T Consensus         3 ~a~~~~~~g~~~~A~~~~~~~l~-------~~P~-------~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~   60 (65)
T PF13432_consen    3 LARALYQQGDYDEAIAAFEQALK-------QDPD-------NPEAWYLLGRILYQQGRYDEALAYYERALEL   60 (65)
T ss_dssp             HHHHHHHCTHHHHHHHHHHHHHC-------CSTT-------HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHH-------HCCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            45566777888888887777643       3343       3567788999999999999999999988754

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=95.11  E-value=0.067  Score=31.83  Aligned_cols=38  Identities=16%  Similarity=0.237  Sum_probs=27.7

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcC
Q 020453          210 SVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRH  247 (326)
Q Consensus       210 ~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~  247 (326)
                      +...++|+.+....|++++|+..+++++++.+.+.+.+
T Consensus         2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~G~~   39 (42)
T PF13374_consen    2 ASALNNLANAYRAQGRYEEALELLEEALEIRERLLGPD   39 (42)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH-------
T ss_pred             HHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHhccc
Confidence            35678999999999999999999999999999886654

>PRK11189 lipoprotein NlpI; Provisional

Probab=95.05  E-value=0.13  Score=45.94  Aligned_cols=62  Identities=15%  Similarity=0.089  Sum_probs=40.1

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 020453          211 VSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIK  286 (326)
Q Consensus       211 ~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~  286 (326)
                      .....++.+....|++++|+..|.+++++       .+.       ....+.++|.++...|++++|++.+++++.
T Consensus        99 ~a~~~lg~~~~~~g~~~~A~~~~~~Al~l-------~P~-------~~~a~~~lg~~l~~~g~~~eA~~~~~~al~  160 (296)
T PRK11189         99 DAYNYLGIYLTQAGNFDAAYEAFDSVLEL-------DPT-------YNYAYLNRGIALYYGGRYELAQDDLLAFYQ  160 (296)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHh-------CCC-------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            45566666777777777777777766554       122       234566777777777777777777766653

>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]

Probab=94.99  E-value=0.0057  Score=56.77  Aligned_cols=43  Identities=28%  Similarity=0.840  Sum_probs=37.3

Q ss_pred             CCcccccccccccCCCeecccCCcchHHhHhcCC---------CCCCCCcccc
Q 020453           22 GPLSCMICQALLFECSKCTPCSHVYCKACISRFK---------DCPLCGADIE   65 (326)
Q Consensus        22 ~~l~C~iC~~~l~~~p~~l~C~h~fC~~Cl~~~~---------~CP~Cr~~~~   65 (326)
                      ++..|.+|.+. -.+++...|-|.||+.|+.++.         .||.|...+.
T Consensus       535 ~~~~C~lc~d~-aed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~Ls  586 (791)
T KOG1002|consen  535 GEVECGLCHDP-AEDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLS  586 (791)
T ss_pred             CceeecccCCh-hhhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCcccccccc
Confidence            56789999999 6789999999999999997663         3999988776

>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]

Probab=94.96  E-value=0.0099  Score=53.32  Aligned_cols=43  Identities=30%  Similarity=0.829  Sum_probs=36.5

Q ss_pred             CcccccccccccCCCeecccCCcchHHhHhcCC------CCCCCCccccc
Q 020453           23 PLSCMICQALLFECSKCTPCSHVYCKACISRFK------DCPLCGADIEK   66 (326)
Q Consensus        23 ~l~C~iC~~~l~~~p~~l~C~h~fC~~Cl~~~~------~CP~Cr~~~~~   66 (326)
                      +-.|.||-+- -.+-+.=||||-.|..|+..|-      .||.||..+..
T Consensus       369 FeLCKICaen-dKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKG  417 (563)
T KOG1785|consen  369 FELCKICAEN-DKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKG  417 (563)
T ss_pred             HHHHHHhhcc-CCCcccccccchHHHHHHHhhcccCCCCCCCceeeEecc
Confidence            3469999998 5668889999999999999885      29999998874

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=94.85  E-value=0.086  Score=29.95  Aligned_cols=31  Identities=16%  Similarity=0.217  Sum_probs=26.3

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 020453          258 AVSLAKVADVDRSIGNEDVAVDGFQEAIKRL  288 (326)
Q Consensus       258 a~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~  288 (326)
                      +..+.++|.++..+|++++|++.|++++++-
T Consensus         1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~   31 (34)
T PF00515_consen    1 AEAYYNLGNAYFQLGDYEEALEYYQRALELD   31 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred             CHHHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence            3567889999999999999999999998763

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=94.80  E-value=0.64  Score=48.51  Aligned_cols=92  Identities=13%  Similarity=0.025  Sum_probs=54.1

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 020453          212 SLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL  291 (326)
Q Consensus       212 ~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l  291 (326)
                      ...+++.+....|++++|+..|++++++       .+.+       ...+.++|.++...|++++|++.|+++++     
T Consensus       611 a~~~LA~~l~~lG~~deA~~~l~~AL~l-------~Pd~-------~~a~~nLG~aL~~~G~~eeAi~~l~~AL~-----  671 (987)
T PRK09782        611 AYVARATIYRQRHNVPAAVSDLRAALEL-------EPNN-------SNYQAALGYALWDSGDIAQSREMLERAHK-----  671 (987)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHh-------CCCC-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHH-----
Confidence            3456667777777777777777776554       2221       23455666666666666666666555543     


Q ss_pred             hcCCCchhHHhhccchhhhHHHHhHHhcCccccc
Q 020453          292 TLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRS  325 (326)
Q Consensus       292 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (326)
                       ..|+++.+..++  +..+..+|++..++..|++
T Consensus       672 -l~P~~~~a~~nL--A~al~~lGd~~eA~~~l~~  702 (987)
T PRK09782        672 -GLPDDPALIRQL--AYVNQRLDDMAATQHYARL  702 (987)
T ss_pred             -hCCCCHHHHHHH--HHHHHHCCCHHHHHHHHHH
Confidence             245555555555  5555556665555555543

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=94.79  E-value=0.097  Score=36.24  Aligned_cols=89  Identities=19%  Similarity=0.288  Sum_probs=55.3

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhc
Q 020453          214 NKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTL  293 (326)
Q Consensus       214 ~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l~~  293 (326)
                      ..++.+....+++++|+..|.++++..       +..       ...+..++.++...|++++|.+.+++++.+      
T Consensus         4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-------~~~-------~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~------   63 (100)
T cd00189           4 LNLGNLYYKLGDYDEALEYYEKALELD-------PDN-------ADAYYNLAAAYYKLGKYEEALEDYEKALEL------   63 (100)
T ss_pred             HHHHHHHHHHhcHHHHHHHHHHHHhcC-------Ccc-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhC------
Confidence            356666667788888888888776542       111       134566788888888888888877766553      


Q ss_pred             CCCchhHHhhccchhhhHHHHhHHhcCcccc
Q 020453          294 KPEEAGLEQRCWNSSTTNFQKNHLNQLPKFR  324 (326)
Q Consensus       294 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (326)
                      .|....+...+  +..+...++..++...|+
T Consensus        64 ~~~~~~~~~~~--~~~~~~~~~~~~a~~~~~   92 (100)
T cd00189          64 DPDNAKAYYNL--GLAYYKLGKYEEALEAYE   92 (100)
T ss_pred             CCcchhHHHHH--HHHHHHHHhHHHHHHHHH
Confidence            23333344444  555555666666555543

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=94.71  E-value=0.11  Score=45.44  Aligned_cols=80  Identities=18%  Similarity=0.240  Sum_probs=50.2

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH---------HH-HhhcCCCC----------CchhhhHHHHHHHHHHH
Q 020453          208 TLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVR---------RD-AVKRHSNV----------PSQVLDVAVSLAKVADV  267 (326)
Q Consensus       208 ~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~---------~~-~~~~~~~~----------~~~~~~la~~l~~l~~~  267 (326)
                      .+++.++.=|.-....++|++|+..|.+++++-         |- ..-+..+-          +..--.-...+..||.+
T Consensus        79 ~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A  158 (304)
T KOG0553|consen   79 ALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLA  158 (304)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence            345555555666666778888888888888732         10 00000000          00001234567789999


Q ss_pred             HHhcCCHHHHHHHHHHHHHH
Q 020453          268 DRSIGNEDVAVDGFQEAIKR  287 (326)
Q Consensus       268 ~~~~~~~~~a~~~~~~~~~~  287 (326)
                      |..+|++++|++.|++++++
T Consensus       159 ~~~~gk~~~A~~aykKaLel  178 (304)
T KOG0553|consen  159 YLALGKYEEAIEAYKKALEL  178 (304)
T ss_pred             HHccCcHHHHHHHHHhhhcc
Confidence            99999999999999888765

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=94.60  E-value=0.38  Score=48.09  Aligned_cols=124  Identities=13%  Similarity=-0.001  Sum_probs=66.5

Q ss_pred             HHHHHHHHHHhCCchhHhhHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcC
Q 020453          168 LGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRH  247 (326)
Q Consensus       168 l~~~C~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~  247 (326)
                      +.++...-...|.+.++..+.+..    -++.+.......       ..+.+...++++++|+..+++       .....
T Consensus        89 ~~~La~i~~~~g~~~ea~~~l~~~----~~~~Pd~~~a~~-------~~a~~L~~~~~~eeA~~~~~~-------~l~~~  150 (694)
T PRK15179         89 QVLVARALEAAHRSDEGLAVWRGI----HQRFPDSSEAFI-------LMLRGVKRQQGIEAGRAEIEL-------YFSGG  150 (694)
T ss_pred             HHHHHHHHHHcCCcHHHHHHHHHH----HhhCCCcHHHHH-------HHHHHHHHhccHHHHHHHHHH-------HhhcC
Confidence            334444444455555554443332    234454444333       333444444455555554444       44445


Q ss_pred             CCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHhhccchhhhHHHHhHHhcCcccc
Q 020453          248 SNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFR  324 (326)
Q Consensus       248 ~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (326)
                      +++       +..+..+|.++..+|++++|++.|++++.      .+|+.+..+-++  +.....+|+..+|..-|+
T Consensus       151 p~~-------~~~~~~~a~~l~~~g~~~~A~~~y~~~~~------~~p~~~~~~~~~--a~~l~~~G~~~~A~~~~~  212 (694)
T PRK15179        151 SSS-------AREILLEAKSWDEIGQSEQADACFERLSR------QHPEFENGYVGW--AQSLTRRGALWRARDVLQ  212 (694)
T ss_pred             CCC-------HHHHHHHHHHHHHhcchHHHHHHHHHHHh------cCCCcHHHHHHH--HHHHHHcCCHHHHHHHHH
Confidence            543       45667778888888888888877776654      345555555555  555555555555544444

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=94.58  E-value=1.2  Score=43.12  Aligned_cols=57  Identities=16%  Similarity=0.328  Sum_probs=34.4

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 020453          215 KIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAI  285 (326)
Q Consensus       215 ~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~  285 (326)
                      -+|.++..+++++.|.-.|++++++       ++.+.       +.+..+|.+++.+|+.++|+.+|++|.
T Consensus       494 GlG~vy~Kqek~e~Ae~~fqkA~~I-------NP~ns-------vi~~~~g~~~~~~k~~d~AL~~~~~A~  550 (638)
T KOG1126|consen  494 GLGTVYLKQEKLEFAEFHFQKAVEI-------NPSNS-------VILCHIGRIQHQLKRKDKALQLYEKAI  550 (638)
T ss_pred             hhhhheeccchhhHHHHHHHhhhcC-------Cccch-------hHHhhhhHHHHHhhhhhHHHHHHHHHH
Confidence            4677777777888888888877664       22221       234445555666666666665555443

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=94.53  E-value=0.11  Score=40.17  Aligned_cols=22  Identities=14%  Similarity=0.107  Sum_probs=11.2

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHH
Q 020453          215 KIGDLKYYGGDLQAARSYYVRS  236 (326)
Q Consensus       215 ~l~~l~~~~~~~~~a~~~~~~s  236 (326)
                      .++......+++++|+..|++.
T Consensus        22 ~~a~~~~~~~~~~~A~~~~~~~   43 (135)
T TIGR02552        22 ALAYNLYQQGRYDEALKLFQLL   43 (135)
T ss_pred             HHHHHHHHcccHHHHHHHHHHH
Confidence            3444444555555555555444

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=94.47  E-value=0.012  Score=55.99  Aligned_cols=56  Identities=21%  Similarity=0.398  Sum_probs=39.1

Q ss_pred             CCcccccccccccC---CCeecccCCcchHHhHhcCCC--CCCCCcccc------cccccHHHHHHH
Q 020453           22 GPLSCMICQALLFE---CSKCTPCSHVYCKACISRFKD--CPLCGADIE------KIEADTTLQDVV   77 (326)
Q Consensus        22 ~~l~C~iC~~~l~~---~p~~l~C~h~fC~~Cl~~~~~--CP~Cr~~~~------~~~~n~~l~~~~   77 (326)
                      +.+.|+||...|+.   .|+.|-|||+.|+.|++....  ||+=+....      ..+.|+.+...+
T Consensus        10 ~~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~lyn~scp~~~De~~~~~~~~e~p~n~alL~~~   76 (861)
T KOG3161|consen   10 LLLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLYNASCPTKRDEDSSLMQLKEEPRNYALLRRE   76 (861)
T ss_pred             HHhhchHHHHHHHHHhcCcccccccchHHHHHHHhHhhccCCCCccccchhcChhhcchhHHHHHhh
Confidence            46789999876544   499999999999999998754  883222222      256666665444

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=94.41  E-value=0.34  Score=45.25  Aligned_cols=71  Identities=13%  Similarity=0.119  Sum_probs=57.4

Q ss_pred             HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 020453          206 IHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAI  285 (326)
Q Consensus       206 ~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~  285 (326)
                      .........+++.....+++|++|+..|++++++.       +.+.    +....+.|+|.+|..+|++++|++.+++++
T Consensus        71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~-------Pd~a----eA~~A~yNLAcaya~LGr~dEAla~LrrAL  139 (453)
T PLN03098         71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALELN-------PNPD----EAQAAYYNKACCHAYREEGKKAADCLRTAL  139 (453)
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-------CCch----HHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            33345567889999999999999999999998873       2211    122568999999999999999999999999


Q ss_pred             HH
Q 020453          286 KR  287 (326)
Q Consensus       286 ~~  287 (326)
                      ++
T Consensus       140 el  141 (453)
T PLN03098        140 RD  141 (453)
T ss_pred             Hh
Confidence            87

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=94.36  E-value=0.13  Score=47.25  Aligned_cols=25  Identities=4%  Similarity=0.032  Sum_probs=13.3

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHH
Q 020453          261 LAKVADVDRSIGNEDVAVDGFQEAI  285 (326)
Q Consensus       261 l~~l~~~~~~~~~~~~a~~~~~~~~  285 (326)
                      +.++|.++..+|++++|+..|++++
T Consensus        73 ~~~lg~~~~~lg~~~eA~~~~~~al   97 (356)
T PLN03088         73 YLRKGTACMKLEEYQTAKAALEKGA   97 (356)
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            4445555555555555555554444

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=94.35  E-value=1.6  Score=46.74  Aligned_cols=104  Identities=16%  Similarity=0.172  Sum_probs=57.5

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH----------Hhhc-CCCCCchhh------------h-----HHHHHHH
Q 020453          212 SLNKIGDLKYYGGDLQAARSYYVRSLNVRRD----------AVKR-HSNVPSQVL------------D-----VAVSLAK  263 (326)
Q Consensus       212 ~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~----------~~~~-~~~~~~~~~------------~-----la~~l~~  263 (326)
                      ....++.+....+++++|+..|++++++.-.          +... ..+.....+            +     ....+..
T Consensus       387 a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~  466 (1157)
T PRK11447        387 AVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQ  466 (1157)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHH
Confidence            4456788888889999999999988864210          0000 000000000            0     0112334


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHhhccchhhhHHHHhHHhcCccc
Q 020453          264 VADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKF  323 (326)
Q Consensus       264 l~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (326)
                      ++.++...|++++|++.|++++.+      +|++..+...+  +.++...|+..++...|
T Consensus       467 ~a~~~~~~g~~~eA~~~~~~Al~~------~P~~~~~~~~L--A~~~~~~G~~~~A~~~l  518 (1157)
T PRK11447        467 QAEALENQGKWAQAAELQRQRLAL------DPGSVWLTYRL--AQDLRQAGQRSQADALM  518 (1157)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHh------CCCCHHHHHHH--HHHHHHcCCHHHHHHHH
Confidence            567777888888888888877643      45555444444  44554555554444433

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=94.29  E-value=1.8  Score=39.76  Aligned_cols=26  Identities=19%  Similarity=0.440  Sum_probs=14.5

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 020453          261 LAKVADVDRSIGNEDVAVDGFQEAIK  286 (326)
Q Consensus       261 l~~l~~~~~~~~~~~~a~~~~~~~~~  286 (326)
                      +..++.++...|++++|+..+++++.
T Consensus       252 ~~~l~~~~~~~g~~~~A~~~l~~~~~  277 (389)
T PRK11788        252 LPKLMECYQALGDEAEGLEFLRRALE  277 (389)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            34455566666666666655555433

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=94.28  E-value=0.1  Score=44.02  Aligned_cols=91  Identities=12%  Similarity=0.045  Sum_probs=52.5

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcC
Q 020453          215 KIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLK  294 (326)
Q Consensus       215 ~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~  294 (326)
                      -+..++..+|+.+.|...|++++.+.       +.       -+..+||-|.-+-.+|++++|..+|.+|+..    ..-
T Consensus        74 ~~A~~Yq~~Ge~~~A~e~YrkAlsl~-------p~-------~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~----P~Y  135 (250)
T COG3063          74 VRAHYYQKLGENDLADESYRKALSLA-------PN-------NGDVLNNYGAFLCAQGRPEEAMQQFERALAD----PAY  135 (250)
T ss_pred             HHHHHHHHcCChhhHHHHHHHHHhcC-------CC-------ccchhhhhhHHHHhCCChHHHHHHHHHHHhC----CCC
Confidence            34555566666666666666665542       11       1345777776667777777777666655421    122


Q ss_pred             CCchhHHhhccchhhhHHHHhHHhcCccccc
Q 020453          295 PEEAGLEQRCWNSSTTNFQKNHLNQLPKFRS  325 (326)
Q Consensus       295 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (326)
                      |...+...|+  +-+..-.|+..++..+|++
T Consensus       136 ~~~s~t~eN~--G~Cal~~gq~~~A~~~l~r  164 (250)
T COG3063         136 GEPSDTLENL--GLCALKAGQFDQAEEYLKR  164 (250)
T ss_pred             CCcchhhhhh--HHHHhhcCCchhHHHHHHH
Confidence            3444455555  5555555666666666654

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=94.23  E-value=1.2  Score=44.64  Aligned_cols=91  Identities=16%  Similarity=0.122  Sum_probs=54.5

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 020453          212 SLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL  291 (326)
Q Consensus       212 ~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l  291 (326)
                      ....++.+....|++++|+..|++++++       .+.+       .....+++.++..+|++++|+..|++++.     
T Consensus       286 a~~~lg~~l~~~g~~~eA~~~l~~al~l-------~P~~-------~~a~~~La~~l~~~G~~~eA~~~l~~al~-----  346 (656)
T PRK15174        286 IVTLYADALIRTGQNEKAIPLLQQSLAT-------HPDL-------PYVRAMYARALRQVGQYTAASDEFVQLAR-----  346 (656)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHh-------CCCC-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHH-----
Confidence            4556788888888888888888887654       2221       23345677888888888888777655443     


Q ss_pred             hcCCCchhHHhhccchhhhHHHHhHHhcCcccc
Q 020453          292 TLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFR  324 (326)
Q Consensus       292 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (326)
                       .+|+...+...+  +..+..+|+..++...|+
T Consensus       347 -~~P~~~~~~~~~--a~al~~~G~~deA~~~l~  376 (656)
T PRK15174        347 -EKGVTSKWNRYA--AAALLQAGKTSEAESVFE  376 (656)
T ss_pred             -hCccchHHHHHH--HHHHHHCCCHHHHHHHHH
Confidence             244443333222  334444555555544443

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=94.22  E-value=0.35  Score=44.80  Aligned_cols=64  Identities=17%  Similarity=0.185  Sum_probs=48.0

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 020453          210 SVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR  287 (326)
Q Consensus       210 ~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~  287 (326)
                      .+++=+||-....++.+++|+..|-+.+.+....              +..|-.++.+|+.+.+..+|+++|-++.++
T Consensus       524 ~ealfniglt~e~~~~ldeald~f~klh~il~nn--------------~evl~qianiye~led~aqaie~~~q~~sl  587 (840)
T KOG2003|consen  524 TEALFNIGLTAEALGNLDEALDCFLKLHAILLNN--------------AEVLVQIANIYELLEDPAQAIELLMQANSL  587 (840)
T ss_pred             HHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhh--------------HHHHHHHHHHHHHhhCHHHHHHHHHHhccc
Confidence            3455677777777888888888888887775532              445677888999999988999888776543

>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=94.06  E-value=0.023  Score=50.63  Aligned_cols=43  Identities=30%  Similarity=0.862  Sum_probs=35.7

Q ss_pred             CcccccccccccCCCeecccCCc-chHHhHhcCC----CCCCCCccccc
Q 020453           23 PLSCMICQALLFECSKCTPCSHV-YCKACISRFK----DCPLCGADIEK   66 (326)
Q Consensus        23 ~l~C~iC~~~l~~~p~~l~C~h~-fC~~Cl~~~~----~CP~Cr~~~~~   66 (326)
                      ...|-||+.- ..+-+.|||.|. .|..|.....    .||.||..+..
T Consensus       290 gkeCVIClse-~rdt~vLPCRHLCLCs~Ca~~Lr~q~n~CPICRqpi~~  337 (349)
T KOG4265|consen  290 GKECVICLSE-SRDTVVLPCRHLCLCSGCAKSLRYQTNNCPICRQPIEE  337 (349)
T ss_pred             CCeeEEEecC-CcceEEecchhhehhHhHHHHHHHhhcCCCccccchHh
Confidence            6789999999 466999999995 4999987663    49999998763

>KOG3002 consensus Zn finger protein [General function prediction only]

Probab=93.77  E-value=0.074  Score=47.19  Aligned_cols=60  Identities=23%  Similarity=0.618  Sum_probs=43.5

Q ss_pred             CcccCCcccccccccccCCCeeccc--CCcchHHhHhcC-CCCCCCCcccccccccHHHHHHHHHH
Q 020453           18 SFKIGPLSCMICQALLFECSKCTPC--SHVYCKACISRF-KDCPLCGADIEKIEADTTLQDVVDRF   80 (326)
Q Consensus        18 ~~~~~~l~C~iC~~~l~~~p~~l~C--~h~fC~~Cl~~~-~~CP~Cr~~~~~~~~n~~l~~~~~~~   80 (326)
                      .+..+.|.||||.+.+ . |-+..|  ||.-|..|-.+. ..||.||..+..+ .+..+..+++..
T Consensus        43 ~~~~~lleCPvC~~~l-~-~Pi~QC~nGHlaCssC~~~~~~~CP~Cr~~~g~~-R~~amEkV~e~~  105 (299)
T KOG3002|consen   43 LLDLDLLDCPVCFNPL-S-PPIFQCDNGHLACSSCRTKVSNKCPTCRLPIGNI-RCRAMEKVAEAV  105 (299)
T ss_pred             ccchhhccCchhhccC-c-ccceecCCCcEehhhhhhhhcccCCccccccccH-HHHHHHHHHHhc
Confidence            3456889999999995 5 445555  899999999544 5699999998844 455555555543

>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=93.67  E-value=0.047  Score=46.09  Aligned_cols=60  Identities=25%  Similarity=0.585  Sum_probs=40.5

Q ss_pred             CcccccccccccCC-CeecccCCcchHHhHhcCC--CCCCCCcccccccccHHHHHHHHHHHh
Q 020453           23 PLSCMICQALLFEC-SKCTPCSHVYCKACISRFK--DCPLCGADIEKIEADTTLQDVVDRFIE   82 (326)
Q Consensus        23 ~l~C~iC~~~l~~~-p~~l~C~h~fC~~Cl~~~~--~CP~Cr~~~~~~~~n~~l~~~~~~~~~   82 (326)
                      ...|-.|...-... -..+.|+|.||..|.....  .||.|++.+..+..|..+..-+-.++.
T Consensus         3 ~VhCn~C~~~~~~~~f~LTaC~HvfC~~C~k~~~~~~C~lCkk~ir~i~l~~slp~~ik~~F~   65 (233)
T KOG4739|consen    3 FVHCNKCFRFPSQDPFFLTACRHVFCEPCLKASSPDVCPLCKKSIRIIQLNRSLPTDIKSYFA   65 (233)
T ss_pred             eEEeccccccCCCCceeeeechhhhhhhhcccCCccccccccceeeeeecccccchhHHHHcc
Confidence            45677777652122 3456899999999997654  499999998765555555554444443

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=93.66  E-value=0.86  Score=41.99  Aligned_cols=27  Identities=19%  Similarity=0.076  Sum_probs=16.8

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 020453          212 SLNKIGDLKYYGGDLQAARSYYVRSLN  238 (326)
Q Consensus       212 ~~~~l~~l~~~~~~~~~a~~~~~~sl~  238 (326)
                      ....++.+....+++++|+..|.++++
T Consensus       143 ~~~~la~~~~~~g~~~~A~~~~~~~~~  169 (389)
T PRK11788        143 ALQQLLEIYQQEKDWQKAIDVAERLEK  169 (389)
T ss_pred             HHHHHHHHHHHhchHHHHHHHHHHHHH
Confidence            344556666666777777776666544

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=93.54  E-value=0.45  Score=37.94  Aligned_cols=56  Identities=5%  Similarity=-0.105  Sum_probs=26.2

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 020453          216 IGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAI  285 (326)
Q Consensus       216 l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~  285 (326)
                      ++......|++++|...|+-...+       ++.       ...-.-+||.++..+|++++|+..|..+.
T Consensus        41 ~A~~ly~~G~l~~A~~~f~~L~~~-------Dp~-------~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~   96 (157)
T PRK15363         41 YAMQLMEVKEFAGAARLFQLLTIY-------DAW-------SFDYWFRLGECCQAQKHWGEAIYAYGRAA   96 (157)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHh-------Ccc-------cHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            344444555666666555544322       111       12233344555555555555555555443

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=93.46  E-value=0.24  Score=28.00  Aligned_cols=30  Identities=13%  Similarity=0.282  Sum_probs=26.5

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 020453          259 VSLAKVADVDRSIGNEDVAVDGFQEAIKRL  288 (326)
Q Consensus       259 ~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~  288 (326)
                      ..+-.+|.++..+|++++|++.|++++++-
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~   31 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELN   31 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence            456778999999999999999999998874

...

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=93.39  E-value=0.29  Score=46.53  Aligned_cols=77  Identities=14%  Similarity=0.141  Sum_probs=45.0

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHH------HHHhhcCCCCCchhhhH--------------HHHHHHHHHHHHhcCC
Q 020453          214 NKIGDLKYYGGDLQAARSYYVRSLNVR------RDAVKRHSNVPSQVLDV--------------AVSLAKVADVDRSIGN  273 (326)
Q Consensus       214 ~~l~~l~~~~~~~~~a~~~~~~sl~~~------~~~~~~~~~~~~~~~~l--------------a~~l~~l~~~~~~~~~  273 (326)
                      .-||.|.+..+++++|+..|+.+|...      -...+...++...--+-              +++-.|||.-+.++|.
T Consensus       434 ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~  513 (579)
T KOG1125|consen  434 SGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGA  513 (579)
T ss_pred             hhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhh
Confidence            467888888899999999999998743      11111111111111111              1222446666666677


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 020453          274 EDVAVDGFQEAIKRLES  290 (326)
Q Consensus       274 ~~~a~~~~~~~~~~~~~  290 (326)
                      |++|+++|-.|+.+.+.
T Consensus       514 ykEA~~hlL~AL~mq~k  530 (579)
T KOG1125|consen  514 YKEAVKHLLEALSMQRK  530 (579)
T ss_pred             HHHHHHHHHHHHHhhhc
Confidence            77777766666666644

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=93.29  E-value=0.68  Score=36.48  Aligned_cols=91  Identities=19%  Similarity=0.135  Sum_probs=64.8

Q ss_pred             HHHHHHhCCchhHhhHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 020453          172 GDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVP  251 (326)
Q Consensus       172 C~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~  251 (326)
                      +......++...+...+..+.    .+.+..       ......++.+....|++++|+..|.+++++       .+.+ 
T Consensus        31 g~~~~~~g~~~~A~~~~~~al----~~~P~~-------~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l-------~p~~-   91 (144)
T PRK15359         31 GYASWQEGDYSRAVIDFSWLV----MAQPWS-------WRAHIALAGTWMMLKEYTTAINFYGHALML-------DASH-   91 (144)
T ss_pred             HHHHHHcCCHHHHHHHHHHHH----HcCCCc-------HHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-------CCCC-
Confidence            344446677777766655433    233333       234567888888999999999999998765       2332 


Q ss_pred             chhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 020453          252 SQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR  287 (326)
Q Consensus       252 ~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~  287 (326)
                            +..+.++|.++..+|++++|++.|++++.+
T Consensus        92 ------~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~  121 (144)
T PRK15359         92 ------PEPVYQTGVCLKMMGEPGLAREAFQTAIKM  121 (144)
T ss_pred             ------cHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence                  456778899999999999999999887653

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=93.26  E-value=1.7  Score=37.04  Aligned_cols=168  Identities=12%  Similarity=-0.027  Sum_probs=90.0

Q ss_pred             HHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhCCchhHhhHHHHHHHHHHhCCCChhHH
Q 020453          126 RAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEI  205 (326)
Q Consensus       126 ~~~~~~~~~~a~~~~~~c~~~l~~~l~~~~~~~~~C~~H~~~l~~~C~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~  205 (326)
                      ..+..|++++|...+...       +...+...    .........+.+....++...+....+.+.+..    +....+
T Consensus        42 ~~~~~~~~~~A~~~~~~~-------~~~~p~~~----~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~----p~~~~~  106 (235)
T TIGR03302        42 EALDSGDYTEAIKYFEAL-------ESRYPFSP----YAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH----PNHPDA  106 (235)
T ss_pred             HHHHcCCHHHHHHHHHHH-------HHhCCCch----hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC----cCCCch
Confidence            456678888877666422       11111111    111233344556666777777777776655432    222221


Q ss_pred             HHHHHHHHHHHHHHHHhc--------CCHHHHHHHHHHHHHHHHHHhhcCCCCCch---hhh-------HHHHHHHHHHH
Q 020453          206 IHTLSVSLNKIGDLKYYG--------GDLQAARSYYVRSLNVRRDAVKRHSNVPSQ---VLD-------VAVSLAKVADV  267 (326)
Q Consensus       206 ~~~i~~~~~~l~~l~~~~--------~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~---~~~-------la~~l~~l~~~  267 (326)
                          ....-.++.+....        +++++|+..|++.++.       .+.+...   ...       +....-.++..
T Consensus       107 ----~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-------~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~  175 (235)
T TIGR03302       107 ----DYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR-------YPNSEYAPDAKKRMDYLRNRLAGKELYVARF  175 (235)
T ss_pred             ----HHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH-------CCCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                11233444444333        5666777777666543       2222111   011       11111256788


Q ss_pred             HHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHhhccchhhhHHHHhHHhcCcccc
Q 020453          268 DRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFR  324 (326)
Q Consensus       268 ~~~~~~~~~a~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (326)
                      +...|++.+|+..|++++...   ...|..+....++  +..+.-+|+..++.++++
T Consensus       176 ~~~~g~~~~A~~~~~~al~~~---p~~~~~~~a~~~l--~~~~~~lg~~~~A~~~~~  227 (235)
T TIGR03302       176 YLKRGAYVAAINRFETVVENY---PDTPATEEALARL--VEAYLKLGLKDLAQDAAA  227 (235)
T ss_pred             HHHcCChHHHHHHHHHHHHHC---CCCcchHHHHHHH--HHHHHHcCCHHHHHHHHH
Confidence            999999999998888777654   2234444555556  666667777776666554

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=93.23  E-value=0.045  Score=49.49  Aligned_cols=43  Identities=26%  Similarity=0.685  Sum_probs=34.2

Q ss_pred             CcccccccccccC----CCeecccCCcchHHhHhcCC------CCCCCCcccc
Q 020453           23 PLSCMICQALLFE----CSKCTPCSHVYCKACISRFK------DCPLCGADIE   65 (326)
Q Consensus        23 ~l~C~iC~~~l~~----~p~~l~C~h~fC~~Cl~~~~------~CP~Cr~~~~   65 (326)
                      ..+||||++-.-.    .-+.+.|||-|-..||++|.      .||.|.....
T Consensus         4 g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~kat   56 (463)
T KOG1645|consen    4 GTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKAT   56 (463)
T ss_pred             cccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChhH
Confidence            4689999996322    15678999999999999995      4999986654

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=93.20  E-value=0.22  Score=38.31  Aligned_cols=55  Identities=22%  Similarity=0.279  Sum_probs=42.8

Q ss_pred             HHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 020453          220 KYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRL  288 (326)
Q Consensus       220 ~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~  288 (326)
                      ...-|+++.|+..|.+++.+.-       +       -++.+||-+..+..+|+-++|++-+++++++-
T Consensus        53 laE~g~Ld~AlE~F~qal~l~P-------~-------raSayNNRAQa~RLq~~~e~ALdDLn~AleLa  107 (175)
T KOG4555|consen   53 LAEAGDLDGALELFGQALCLAP-------E-------RASAYNNRAQALRLQGDDEEALDDLNKALELA  107 (175)
T ss_pred             HHhccchHHHHHHHHHHHHhcc-------c-------chHhhccHHHHHHHcCChHHHHHHHHHHHHhc
Confidence            3556789999999999887631       1       25678888888999999888888888887764

>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]

Probab=93.10  E-value=0.043  Score=48.17  Aligned_cols=51  Identities=22%  Similarity=0.464  Sum_probs=36.5

Q ss_pred             CCCCCCCc--ccCCcccccccccccCCCeeccc-CCcchHHhHhcCC----CCCCCCcc
Q 020453           12 FGYDAQSF--KIGPLSCMICQALLFECSKCTPC-SHVYCKACISRFK----DCPLCGAD   63 (326)
Q Consensus        12 ~~~~~~~~--~~~~l~C~iC~~~l~~~p~~l~C-~h~fC~~Cl~~~~----~CP~Cr~~   63 (326)
                      ..+.....  ..+.-.||+|+.. ..+|..+.- |-.||..|+-.+.    .||+-..+
T Consensus       287 ~~~~se~e~l~~~~~~CpvClk~-r~Nptvl~vSGyVfCY~Ci~~Yv~~~~~CPVT~~p  344 (357)
T KOG0826|consen  287 KQYNSESELLPPDREVCPVCLKK-RQNPTVLEVSGYVFCYPCIFSYVVNYGHCPVTGYP  344 (357)
T ss_pred             hhcccccccCCCccccChhHHhc-cCCCceEEecceEEeHHHHHHHHHhcCCCCccCCc
Confidence            34444443  3356789999998 677888776 9999999998775    39874443

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=93.03  E-value=1.6  Score=44.43  Aligned_cols=57  Identities=16%  Similarity=0.102  Sum_probs=29.1

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHhhccchhhhHHHHhHHhcCccccc
Q 020453          260 SLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRS  325 (326)
Q Consensus       260 ~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (326)
                      .+.+++.++...|+ .+|+.++++++.+      .|+++.+...+  +..+...|++.+++.+|++
T Consensus       806 ~~~~l~~~~~~~~~-~~A~~~~~~~~~~------~~~~~~~~~~~--~~~~~~~g~~~~A~~~~~~  862 (899)
T TIGR02917       806 VLNNLAWLYLELKD-PRALEYAEKALKL------APNIPAILDTL--GWLLVEKGEADRALPLLRK  862 (899)
T ss_pred             HHHHHHHHHHhcCc-HHHHHHHHHHHhh------CCCCcHHHHHH--HHHHHHcCCHHHHHHHHHH
Confidence            44555555555555 5555555544432      34444444444  4455555555555555543

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=92.95  E-value=0.36  Score=44.08  Aligned_cols=76  Identities=9%  Similarity=0.101  Sum_probs=47.6

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhh-hHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 020453          210 SVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVL-DVAVSLAKVADVDRSIGNEDVAVDGFQEAI  285 (326)
Q Consensus       210 ~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~-~la~~l~~l~~~~~~~~~~~~a~~~~~~~~  285 (326)
                      +...+.-|+.....++|..|...|++++...........+.....- -....+.||+.++..++.+.+|++.-++++
T Consensus       208 A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvL  284 (397)
T KOG0543|consen  208 ADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVL  284 (397)
T ss_pred             HHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHH
Confidence            4455667888889999999999999998865422111111111111 234456678888888877776665544433

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=92.93  E-value=0.27  Score=41.15  Aligned_cols=92  Identities=17%  Similarity=0.198  Sum_probs=58.1

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHH-HHhcCC--HHHHHHHHHHHHHHH
Q 020453          212 SLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADV-DRSIGN--EDVAVDGFQEAIKRL  288 (326)
Q Consensus       212 ~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~-~~~~~~--~~~a~~~~~~~~~~~  288 (326)
                      ....++.+....+++++|+..|++++++.       +.+       ...+..+|.+ +...|+  +.+|.+.+++++   
T Consensus        75 ~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-------P~~-------~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al---  137 (198)
T PRK10370         75 QWALLGEYYLWRNDYDNALLAYRQALQLR-------GEN-------AELYAALATVLYYQAGQHMTPQTREMIDKAL---  137 (198)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------CCC-------HHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH---
Confidence            45678888899999999999999887653       222       2344555654 345455  244444444333   


Q ss_pred             HHhhcCCCchhHHhhccchhhhHHHHhHHhcCccccc
Q 020453          289 ESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRS  325 (326)
Q Consensus       289 ~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (326)
                         ..+|.+...+..+  +......|++.+++..|++
T Consensus       138 ---~~dP~~~~al~~L--A~~~~~~g~~~~Ai~~~~~  169 (198)
T PRK10370        138 ---ALDANEVTALMLL--ASDAFMQADYAQAIELWQK  169 (198)
T ss_pred             ---HhCCCChhHHHHH--HHHHHHcCCHHHHHHHHHH
Confidence               4456666666666  6666667777777666554

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=92.88  E-value=0.34  Score=27.21  Aligned_cols=30  Identities=17%  Similarity=0.210  Sum_probs=25.0

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 020453          259 VSLAKVADVDRSIGNEDVAVDGFQEAIKRL  288 (326)
Q Consensus       259 ~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~  288 (326)
                      ..+..+|.++..+|++++|++.+++++.+-
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~   31 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALELD   31 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence            456788999999999999999999998763

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=92.75  E-value=0.88  Score=33.70  Aligned_cols=61  Identities=15%  Similarity=0.071  Sum_probs=35.5

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 020453          215 KIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIK  286 (326)
Q Consensus       215 ~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~  286 (326)
                      .++......+++++|+..|.+.++.       .+.+.    ......-.+|.++...|+++.|+..|++++.
T Consensus         7 ~~~~~~~~~~~~~~A~~~~~~~~~~-------~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~   67 (119)
T TIGR02795         7 DAALLVLKAGDYADAIQAFQAFLKK-------YPKST----YAPNAHYWLGEAYYAQGKYADAAKAFLAVVK   67 (119)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHH-------CCCcc----ccHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence            3445555667777777777776532       11110    1123344567777777777777777766654

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=92.64  E-value=0.084  Score=37.26  Aligned_cols=83  Identities=18%  Similarity=0.233  Sum_probs=51.5

Q ss_pred             cCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHh
Q 020453          223 GGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQ  302 (326)
Q Consensus       223 ~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~p~~~~~~~  302 (326)
                      .++++.|+..|++.++....       +.     ....+-++|.++..+|++++|++.+++ ..      .++.+....-
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~-------~~-----~~~~~~~la~~~~~~~~y~~A~~~~~~-~~------~~~~~~~~~~   62 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPT-------NP-----NSAYLYNLAQCYFQQGKYEEAIELLQK-LK------LDPSNPDIHY   62 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCG-------TH-----HHHHHHHHHHHHHHTTHHHHHHHHHHC-HT------HHHCHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCC-------Ch-----hHHHHHHHHHHHHHCCCHHHHHHHHHH-hC------CCCCCHHHHH
Confidence            56788888888888766432       00     122344589999999999999988877 11      1122222232


Q ss_pred             hccchhhhHHHHhHHhcCcccccC
Q 020453          303 RCWNSSTTNFQKNHLNQLPKFRSA  326 (326)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~  326 (326)
                      -+  +..+..++++.+++..|++|
T Consensus        63 l~--a~~~~~l~~y~eAi~~l~~~   84 (84)
T PF12895_consen   63 LL--ARCLLKLGKYEEAIKALEKA   84 (84)
T ss_dssp             HH--HHHHHHTT-HHHHHHHHHHH
T ss_pred             HH--HHHHHHhCCHHHHHHHHhcC
Confidence            23  66677777888887776653

>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=92.59  E-value=0.06  Score=48.78  Aligned_cols=55  Identities=29%  Similarity=0.710  Sum_probs=36.9

Q ss_pred             CCccccccccccc--CCCeecccCCcchHHhHhcCC------------CCCCCCcccccccccHHHHHHHH
Q 020453           22 GPLSCMICQALLF--ECSKCTPCSHVYCKACISRFK------------DCPLCGADIEKIEADTTLQDVVD   78 (326)
Q Consensus        22 ~~l~C~iC~~~l~--~~p~~l~C~h~fC~~Cl~~~~------------~CP~Cr~~~~~~~~n~~l~~~~~   78 (326)
                      ..+.|.||++...  ..-+.+||+|.||++|+..++            .||.+...-.  .+.-.++++++
T Consensus       183 slf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C~~~--a~~g~vKelvg  251 (445)
T KOG1814|consen  183 SLFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKCGSV--APPGQVKELVG  251 (445)
T ss_pred             hcccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCCCccc--CCchHHHHHHH
Confidence            4678999998621  236789999999999998774            3888654433  22225555543

>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=92.58  E-value=0.05  Score=46.42  Aligned_cols=56  Identities=21%  Similarity=0.558  Sum_probs=40.0

Q ss_pred             CCCCCCCCCCCcccCCcccccccccccC---------CCeecccCCcchHHhHhcCC------CCCCCCcccc
Q 020453            8 PKCPFGYDAQSFKIGPLSCMICQALLFE---------CSKCTPCSHVYCKACISRFK------DCPLCGADIE   65 (326)
Q Consensus         8 ~~~~~~~~~~~~~~~~l~C~iC~~~l~~---------~p~~l~C~h~fC~~Cl~~~~------~CP~Cr~~~~   65 (326)
                      +-=|.|.++...  +.-.|.+|...+..         +-..|.|+|+|=..||..|-      .||.|++.+.
T Consensus       211 fYs~~glPtkhl--~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVd  281 (328)
T KOG1734|consen  211 FYSPSGLPTKHL--SDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVD  281 (328)
T ss_pred             ccCCCCCCCCCC--CcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhh
Confidence            333445554443  35679999987433         13478999999999999994      2999998776

>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins

Probab=92.54  E-value=3.7  Score=31.24  Aligned_cols=103  Identities=15%  Similarity=0.124  Sum_probs=68.5

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCc-hhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh-h
Q 020453          215 KIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPS-QVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL-T  292 (326)
Q Consensus       215 ~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~-~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l-~  292 (326)
                      .+++.....++.-.++-.|++++.+.++.......+.. .++--+.+--|||..|+.+|+-+=++.|++=|.+..-.| .
T Consensus         6 llAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~VltLiP   85 (140)
T PF10952_consen    6 LLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLTLIP   85 (140)
T ss_pred             HHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHHhcc
Confidence            45566666778888899999999998887433333222 223344566799999999999999999999888877776 2


Q ss_pred             cC--CCchhHHhhccchhhhHHHHhHHhc
Q 020453          293 LK--PEEAGLEQRCWNSSTTNFQKNHLNQ  319 (326)
Q Consensus       293 ~~--p~~~~~~~~~~~~~~~~~~~~~~~~  319 (326)
                      .-  ++-.++...+  +-...-+-++++-
T Consensus        86 QCp~~~C~afi~sL--GCCk~ALl~F~KR  112 (140)
T PF10952_consen   86 QCPNTECEAFIDSL--GCCKKALLDFMKR  112 (140)
T ss_pred             CCCCcchHHHHHhh--hccHHHHHHHHHh
Confidence            22  2234456555  4444444444443

>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B

Probab=92.49  E-value=0.083  Score=32.89  Aligned_cols=39  Identities=23%  Similarity=0.598  Sum_probs=17.2

Q ss_pred             cccccccc-cCCCeec--ccCCcchHHhHhcCC-----CCCCCCccc
Q 020453           26 CMICQALL-FECSKCT--PCSHVYCKACISRFK-----DCPLCGADI   64 (326)
Q Consensus        26 C~iC~~~l-~~~p~~l--~C~h~fC~~Cl~~~~-----~CP~Cr~~~   64 (326)
                      ||+|.+.+ .++-..+  +||..+|+.|.....     .||-||+..
T Consensus         1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y   47 (48)
T PF14570_consen    1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREPY   47 (48)
T ss_dssp             -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred             CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence            67887764 1222222  589999999976554     399999864

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=92.35  E-value=1.1  Score=39.54  Aligned_cols=107  Identities=13%  Similarity=0.077  Sum_probs=55.1

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHH-------HHhhc--CCCCCchhhhHHH-----------HHHHHHHHHHhc
Q 020453          212 SLNKIGDLKYYGGDLQAARSYYVRSLNVRR-------DAVKR--HSNVPSQVLDVAV-----------SLAKVADVDRSI  271 (326)
Q Consensus       212 ~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~-------~~~~~--~~~~~~~~~~la~-----------~l~~l~~~~~~~  271 (326)
                      .....+.+....|+.++|+..|+++++..-       ...-.  ...+......+..           ....+|.++..+
T Consensus       148 ~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~l  227 (280)
T PF13429_consen  148 FWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQL  227 (280)
T ss_dssp             HHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccc
Confidence            345677788888999999999999888431       11000  0010000001111           113367888888


Q ss_pred             CCHHHHHHHHHHHHHHHHHhhcCCCchhHHhhccchhhhHHHHhHHhcCcccccC
Q 020453          272 GNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRSA  326 (326)
Q Consensus       272 ~~~~~a~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (326)
                      |++++|+.+|++++      ..+|.++.++..+  +.++.-.|+...+...+++|
T Consensus       228 g~~~~Al~~~~~~~------~~~p~d~~~~~~~--a~~l~~~g~~~~A~~~~~~~  274 (280)
T PF13429_consen  228 GRYEEALEYLEKAL------KLNPDDPLWLLAY--ADALEQAGRKDEALRLRRQA  274 (280)
T ss_dssp             T-HHHHHHHHHHHH------HHSTT-HHHHHHH--HHHHT---------------
T ss_pred             cccccccccccccc------ccccccccccccc--cccccccccccccccccccc
Confidence            99888888877644      3467787888888  88888888888887776653

>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]

Probab=92.34  E-value=0.054  Score=46.84  Aligned_cols=41  Identities=24%  Similarity=0.706  Sum_probs=31.2

Q ss_pred             ccccccccccCCCee----cccCCcchHHhHhcCCC-----CCCCCcccc
Q 020453           25 SCMICQALLFECSKC----TPCSHVYCKACISRFKD-----CPLCGADIE   65 (326)
Q Consensus        25 ~C~iC~~~l~~~p~~----l~C~h~fC~~Cl~~~~~-----CP~Cr~~~~   65 (326)
                      .||+|.-.-+.+|-+    -+|+|+.|.+|....+.     ||.|...+.
T Consensus         2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLR   51 (300)
T KOG3800|consen    2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGPAQCPECMVILR   51 (300)
T ss_pred             CCcccccceecCccceeeeccccchHHHHHHHHHHhcCCCCCCcccchhh
Confidence            488988633444432    38999999999988763     999998776

>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=92.26  E-value=0.065  Score=47.51  Aligned_cols=46  Identities=28%  Similarity=0.530  Sum_probs=35.0

Q ss_pred             cccCCcccccccccccCCCeecccCCcchHHhHhcCC-C---CCCCCcccc
Q 020453           19 FKIGPLSCMICQALLFECSKCTPCSHVYCKACISRFK-D---CPLCGADIE   65 (326)
Q Consensus        19 ~~~~~l~C~iC~~~l~~~p~~l~C~h~fC~~Cl~~~~-~---CP~Cr~~~~   65 (326)
                      ...++-.||||..- .-..+..||+|.-|+.||.+.. .   |=.|+..+.
T Consensus       418 p~sEd~lCpICyA~-pi~Avf~PC~H~SC~~CI~qHlmN~k~CFfCktTv~  467 (489)
T KOG4692|consen  418 PDSEDNLCPICYAG-PINAVFAPCSHRSCYGCITQHLMNCKRCFFCKTTVI  467 (489)
T ss_pred             CCcccccCcceecc-cchhhccCCCCchHHHHHHHHHhcCCeeeEecceee
Confidence            34578899999887 3448889999999999998874 2   655665544

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=92.06  E-value=0.48  Score=50.62  Aligned_cols=29  Identities=21%  Similarity=0.303  Sum_probs=24.5

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 020453          211 VSLNKIGDLKYYGGDLQAARSYYVRSLNV  239 (326)
Q Consensus       211 ~~~~~l~~l~~~~~~~~~a~~~~~~sl~~  239 (326)
                      .....++.+....+++++|+..|++++++
T Consensus       304 ~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~  332 (1157)
T PRK11447        304 EALGALGQAYSQQGDRARAVAQFEKALAL  332 (1157)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            34567888999999999999999998864

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=91.78  E-value=1.8  Score=31.26  Aligned_cols=65  Identities=22%  Similarity=0.295  Sum_probs=48.4

Q ss_pred             hcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 020453          222 YGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL  291 (326)
Q Consensus       222 ~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l  291 (326)
                      ..++|.+|+..+.+.............     .......+-+++.++...|++++|+..+++++.+-++.
T Consensus        10 ~~~dy~~A~d~L~~~fD~~~~~~~~~~-----~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~   74 (94)
T PF12862_consen   10 RSGDYSEALDALHRYFDYAKQSNNSSS-----NSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAREN   74 (94)
T ss_pred             HcCCHHHHHHHHHHHHHHHhhcccchh-----hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence            357888888888887776544322221     22344556678999999999999999999999999875

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=91.59  E-value=0.63  Score=26.19  Aligned_cols=30  Identities=27%  Similarity=0.507  Sum_probs=25.3

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 020453          211 VSLNKIGDLKYYGGDLQAARSYYVRSLNVR  240 (326)
Q Consensus       211 ~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~  240 (326)
                      ....++|.+...++++++|+..|++++++.
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~   31 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALELD   31 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence            356789999999999999999999999863

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=91.59  E-value=1.5  Score=30.25  Aligned_cols=43  Identities=23%  Similarity=0.317  Sum_probs=36.1

Q ss_pred             hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh-hcCCCch
Q 020453          256 DVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL-TLKPEEA  298 (326)
Q Consensus       256 ~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l-~~~p~~~  298 (326)
                      +.|..+...|-.....|++++|+..|+++++.+.++ ...||..
T Consensus         4 ~~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~~~~~pD~~   47 (75)
T cd02682           4 EMARKYAINAVKAEKEGNAEDAITNYKKAIEVLSQIVKNYPDSP   47 (75)
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhCCChH
Confidence            356677777888888999999999999999999998 6667764

This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.

>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=91.37  E-value=0.11  Score=46.95  Aligned_cols=43  Identities=21%  Similarity=0.484  Sum_probs=32.6

Q ss_pred             CCccccccccccc--CCCeecccCCcchHHhHhcCC-------CCCCCCccc
Q 020453           22 GPLSCMICQALLF--ECSKCTPCSHVYCKACISRFK-------DCPLCGADI   64 (326)
Q Consensus        22 ~~l~C~iC~~~l~--~~p~~l~C~h~fC~~Cl~~~~-------~CP~Cr~~~   64 (326)
                      ..|.|||=.+.--  ++|..|.|||..|+.-+.+..       .||.|....
T Consensus       333 SvF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP~e~  384 (394)
T KOG2817|consen  333 SVFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCPVEQ  384 (394)
T ss_pred             ceeecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCCccc
Confidence            4688998555311  369999999999999997663       499998654

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=91.31  E-value=1.1  Score=30.17  Aligned_cols=57  Identities=14%  Similarity=0.151  Sum_probs=42.6

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 020453          217 GDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR  287 (326)
Q Consensus       217 ~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~  287 (326)
                      ..+....+++++|+..+++++++       .+.+       ...+...|.++..+|++++|.+.++++++.
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~~-------~p~~-------~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~   58 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALEL-------DPDD-------PELWLQRARCLFQLGRYEEALEDLERALEL   58 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHh-------Cccc-------chhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            45667778899998888888766       3332       234556789999999999999988887743

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=91.25  E-value=1.1  Score=30.69  Aligned_cols=61  Identities=13%  Similarity=0.257  Sum_probs=43.4

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 020453          212 SLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIK  286 (326)
Q Consensus       212 ~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~  286 (326)
                      ....++.+....+++++|+..|.+++++.       +...       ..+..++.++...|++++|...+.+++.
T Consensus        36 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-------~~~~-------~~~~~~~~~~~~~~~~~~a~~~~~~~~~   96 (100)
T cd00189          36 AYYNLAAAYYKLGKYEEALEDYEKALELD-------PDNA-------KAYYNLGLAYYKLGKYEEALEAYEKALE   96 (100)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCC-------Ccch-------hHHHHHHHHHHHHHhHHHHHHHHHHHHc
Confidence            44567777777788888888888876542       2211       4456778888888998888888877654

>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]

Probab=91.23  E-value=0.1  Score=51.73  Aligned_cols=40  Identities=30%  Similarity=0.786  Sum_probs=34.6

Q ss_pred             cccccccccccCCCeecccCCcchHHhHhcCCC------CCCCCcccc
Q 020453           24 LSCMICQALLFECSKCTPCSHVYCKACISRFKD------CPLCGADIE   65 (326)
Q Consensus        24 l~C~iC~~~l~~~p~~l~C~h~fC~~Cl~~~~~------CP~Cr~~~~   65 (326)
                      ..|++|.+  .+.++..+|+|.||..|+...+.      ||.||....
T Consensus       455 ~~c~ic~~--~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~  500 (674)
T KOG1001|consen  455 HWCHICCD--LDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLK  500 (674)
T ss_pred             cccccccc--cccceeecccchHHHHHHHhccccccCCCCcHHHHHHH
Confidence            79999999  37799999999999999988763      999986654

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=91.04  E-value=1.7  Score=40.67  Aligned_cols=66  Identities=14%  Similarity=0.163  Sum_probs=53.8

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 020453          211 VSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLES  290 (326)
Q Consensus       211 ~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  290 (326)
                      .....+|+.+..+++.++|+..|.+++..-.      .+        ...+..||.+++.+++.++|..+|.+-++....
T Consensus       433 Rlw~aLG~CY~kl~~~~eAiKCykrai~~~d------te--------~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~  498 (559)
T KOG1155|consen  433 RLWVALGECYEKLNRLEEAIKCYKRAILLGD------TE--------GSALVRLAKLYEELKDLNEAAQYYEKYVEVSEL  498 (559)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHhccc------cc--------hHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Confidence            3456789999999999999999999865422      12        356888999999999999999999999887743

>KOG3039 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.95  E-value=0.14  Score=43.11  Aligned_cols=44  Identities=18%  Similarity=0.400  Sum_probs=35.7

Q ss_pred             CCcccccccccccCC---CeecccCCcchHHhHhcCCC----CCCCCcccc
Q 020453           22 GPLSCMICQALLFEC---SKCTPCSHVYCKACISRFKD----CPLCGADIE   65 (326)
Q Consensus        22 ~~l~C~iC~~~l~~~---p~~l~C~h~fC~~Cl~~~~~----CP~Cr~~~~   65 (326)
                      ..+.||+|.+.|-+.   -+.-||||.||..|.+.++.    ||.|..+..
T Consensus       220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~plk  270 (303)
T KOG3039|consen  220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPLK  270 (303)
T ss_pred             cceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCCcCc
Confidence            457899999986332   45568999999999999864    999998876

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=90.81  E-value=5.5  Score=38.42  Aligned_cols=72  Identities=14%  Similarity=0.120  Sum_probs=54.1

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCC-CchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 020453          215 KIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNV-PSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIK  286 (326)
Q Consensus       215 ~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~-~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~  286 (326)
                      |.+-+....|+|.+|++.+++++.+-++.+.....+ .....++...--.++.++..+|+.++|...|...+.
T Consensus       180 N~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~  252 (652)
T KOG2376|consen  180 NTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIK  252 (652)
T ss_pred             HHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence            445566677999999999999999988877655444 333344555556789999999999999988775543

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=90.78  E-value=1.4  Score=40.52  Aligned_cols=52  Identities=10%  Similarity=0.138  Sum_probs=30.4

Q ss_pred             HhCCchhHhhHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 020453          177 AMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNV  239 (326)
Q Consensus       177 ~~h~~H~~~~~~e~~~~~~~~L~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~  239 (326)
                      ..+++..++..++.+...    .+...       ....+++.+...++++++|+..+++++++
T Consensus        14 ~~~~~~~Ai~~~~~Al~~----~P~~~-------~a~~~~a~~~~~~g~~~eAl~~~~~Al~l   65 (356)
T PLN03088         14 VDDDFALAVDLYTQAIDL----DPNNA-------ELYADRAQANIKLGNFTEAVADANKAIEL   65 (356)
T ss_pred             HcCCHHHHHHHHHHHHHh----CCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            445556666555554432    22222       23346666677777888888877777665

>PRK11189 lipoprotein NlpI; Provisional

Probab=90.75  E-value=2.6  Score=37.61  Aligned_cols=92  Identities=21%  Similarity=0.213  Sum_probs=54.1

Q ss_pred             HHHHHHHHhCCchhHhhHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCC
Q 020453          170 MLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSN  249 (326)
Q Consensus       170 ~~C~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~  249 (326)
                      ..+......++...+...++.+.+    +.+..       .....+++.+....|++++|+..|++.+++       .+.
T Consensus       103 ~lg~~~~~~g~~~~A~~~~~~Al~----l~P~~-------~~a~~~lg~~l~~~g~~~eA~~~~~~al~~-------~P~  164 (296)
T PRK11189        103 YLGIYLTQAGNFDAAYEAFDSVLE----LDPTY-------NYAYLNRGIALYYGGRYELAQDDLLAFYQD-------DPN  164 (296)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHH----hCCCC-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-------CCC
Confidence            333444445555555544443332    22322       234567899999999999999999998754       333


Q ss_pred             CCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 020453          250 VPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR  287 (326)
Q Consensus       250 ~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~  287 (326)
                      +.      . ..-++ .+....+++++|++.++++...
T Consensus       165 ~~------~-~~~~~-~l~~~~~~~~~A~~~l~~~~~~  194 (296)
T PRK11189        165 DP------Y-RALWL-YLAESKLDPKQAKENLKQRYEK  194 (296)
T ss_pred             CH------H-HHHHH-HHHHccCCHHHHHHHHHHHHhh
Confidence            21      0 11111 2344567889999888776533

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=90.68  E-value=0.7  Score=27.31  Aligned_cols=34  Identities=12%  Similarity=0.358  Sum_probs=29.5

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhh
Q 020453          212 SLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVK  245 (326)
Q Consensus       212 ~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~  245 (326)
                      ....+|++....++|++|+..|.++++++++...
T Consensus         3 v~~~Lgeisle~e~f~qA~~D~~~aL~i~~~l~~   36 (38)
T PF10516_consen    3 VYDLLGEISLENENFEQAIEDYEKALEIQEELLP   36 (38)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcC
Confidence            4567899999999999999999999999987654

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=90.38  E-value=0.73  Score=36.21  Aligned_cols=92  Identities=14%  Similarity=0.136  Sum_probs=59.3

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcC
Q 020453          215 KIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLK  294 (326)
Q Consensus       215 ~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~  294 (326)
                      .++.+....|++++|+..|++.++..       +..  ....+  ..-+|+.++...|++++|+..++.       +...
T Consensus        53 ~lA~~~~~~g~~~~A~~~l~~~~~~~-------~d~--~l~~~--a~l~LA~~~~~~~~~d~Al~~L~~-------~~~~  114 (145)
T PF09976_consen   53 QLAKAAYEQGDYDEAKAALEKALANA-------PDP--ELKPL--ARLRLARILLQQGQYDEALATLQQ-------IPDE  114 (145)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHhhC-------CCH--HHHHH--HHHHHHHHHHHcCCHHHHHHHHHh-------ccCc
Confidence            46778888899999999998876532       110  01111  233578999999998888876643       3222


Q ss_pred             CCchhHHhhccchhhhHHHHhHHhcCcccccC
Q 020453          295 PEEAGLEQRCWNSSTTNFQKNHLNQLPKFRSA  326 (326)
Q Consensus       295 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (326)
                      +..+......  +.++.-.|+..++...|++|
T Consensus       115 ~~~~~~~~~~--Gdi~~~~g~~~~A~~~y~~A  144 (145)
T PF09976_consen  115 AFKALAAELL--GDIYLAQGDYDEARAAYQKA  144 (145)
T ss_pred             chHHHHHHHH--HHHHHHCCCHHHHHHHHHHh
Confidence            2233344434  77777888888887777664

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=90.33  E-value=0.73  Score=40.40  Aligned_cols=87  Identities=9%  Similarity=0.055  Sum_probs=53.7

Q ss_pred             hcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHH
Q 020453          222 YGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLE  301 (326)
Q Consensus       222 ~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~p~~~~~~  301 (326)
                      ..++|++|+..|++.++       ..+...    .....+-|+|.++...|++++|+..|+..+...   ..+|.....+
T Consensus       155 ~~~~y~~Ai~af~~fl~-------~yP~s~----~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~y---P~s~~~~dAl  220 (263)
T PRK10803        155 DKSRQDDAIVAFQNFVK-------KYPDST----YQPNANYWLGQLNYNKGKKDDAAYYFASVVKNY---PKSPKAADAM  220 (263)
T ss_pred             hcCCHHHHHHHHHHHHH-------HCcCCc----chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC---CCCcchhHHH
Confidence            34667776666665543       344322    224556799999999999999998877666544   2334344455


Q ss_pred             hhccchhhhHHHHhHHhcCcccc
Q 020453          302 QRCWNSSTTNFQKNHLNQLPKFR  324 (326)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~~  324 (326)
                      ..+  +.++..+++..++...|+
T Consensus       221 ~kl--g~~~~~~g~~~~A~~~~~  241 (263)
T PRK10803        221 FKV--GVIMQDKGDTAKAKAVYQ  241 (263)
T ss_pred             HHH--HHHHHHcCCHHHHHHHHH
Confidence            445  555556666666655543

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=90.28  E-value=1.8  Score=35.37  Aligned_cols=79  Identities=9%  Similarity=0.092  Sum_probs=49.7

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh-hcCCCchhHHhhccchh
Q 020453          230 RSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL-TLKPEEAGLEQRCWNSS  308 (326)
Q Consensus       230 ~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l-~~~p~~~~~~~~~~~~~  308 (326)
                      +-.|+++.+..+.....++.+...+......|-.|+.    .....++.+.++++++-++.. ..+|..+..+-++  +.
T Consensus         4 l~~FE~ark~aea~y~~nP~DadnL~~WG~ALLELAq----fk~g~es~~miedAisK~eeAL~I~P~~hdAlw~l--Gn   77 (186)
T PF06552_consen    4 LLFFEHARKKAEAAYAKNPLDADNLTNWGGALLELAQ----FKQGPESKKMIEDAISKFEEALKINPNKHDALWCL--GN   77 (186)
T ss_dssp             HHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH----HS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHH--HH
T ss_pred             HHHHHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHh----ccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHH--HH
Confidence            3467888888888888888865444444444444432    244456778888888888887 7788888877777  55


Q ss_pred             hhHHHH
Q 020453          309 TTNFQK  314 (326)
Q Consensus       309 ~~~~~~  314 (326)
                      .+..++
T Consensus        78 A~ts~A   83 (186)
T PF06552_consen   78 AYTSLA   83 (186)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            555544

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=90.19  E-value=1.5  Score=43.79  Aligned_cols=58  Identities=12%  Similarity=0.084  Sum_probs=38.2

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHhhccchhhhHHHHhHHhcCcccc
Q 020453          259 VSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFR  324 (326)
Q Consensus       259 ~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (326)
                      ..+.++|.++..+|++++|+..+++++.+      +|++..+..++  +..+..+|++.+++..|+
T Consensus       285 ~a~~~lg~~l~~~g~~~eA~~~l~~al~l------~P~~~~a~~~L--a~~l~~~G~~~eA~~~l~  342 (656)
T PRK15174        285 RIVTLYADALIRTGQNEKAIPLLQQSLAT------HPDLPYVRAMY--ARALRQVGQYTAASDEFV  342 (656)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHh------CCCCHHHHHHH--HHHHHHCCCHHHHHHHHH
Confidence            45667788888889988888888776653      56665555555  555555555555554443

>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0

Probab=90.12  E-value=0.13  Score=39.17  Aligned_cols=44  Identities=23%  Similarity=0.648  Sum_probs=35.9

Q ss_pred             CCcccccccccccCCCeecc----cCCcchHHhHhcCCC-------CCCCCccccc
Q 020453           22 GPLSCMICQALLFECSKCTP----CSHVYCKACISRFKD-------CPLCGADIEK   66 (326)
Q Consensus        22 ~~l~C~iC~~~l~~~p~~l~----C~h~fC~~Cl~~~~~-------CP~Cr~~~~~   66 (326)
                      ....|.||.+.. .+..-|.    ||-+.|..|--..|.       ||.|+.++.+
T Consensus        79 ~lYeCnIC~etS-~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKs  133 (140)
T PF05290_consen   79 KLYECNICKETS-AEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKS  133 (140)
T ss_pred             CceeccCccccc-chhhcCCcccccchHHHHHHHHHHHHHcccCCCCCcccccccc
Confidence            456899999994 5555553    999999999998884       9999998874

>PRK04841 transcriptional regulator MalT; Provisional

Probab=90.11  E-value=4.9  Score=41.71  Aligned_cols=103  Identities=15%  Similarity=0.069  Sum_probs=66.3

Q ss_pred             HhCCchhHhhHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhh
Q 020453          177 AMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLD  256 (326)
Q Consensus       177 ~~h~~H~~~~~~e~~~~~~~~L~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~  256 (326)
                      ..++...+..+.+.+.......+...     ........++.+....|++++|...+++++++.+.......      ..
T Consensus       503 ~~G~~~~A~~~~~~al~~~~~~g~~~-----~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~------~~  571 (903)
T PRK04841        503 CKGELARALAMMQQTEQMARQHDVYH-----YALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQL------PM  571 (903)
T ss_pred             HcCCHHHHHHHHHHHHHHHhhhcchH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccc------cH
Confidence            34555556555555554444433311     12234567888888999999999999999988765432111      01


Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 020453          257 VAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLES  290 (326)
Q Consensus       257 la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  290 (326)
                      .+.....++.++...|++++|...+++++.+.+.
T Consensus       572 ~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~  605 (903)
T PRK04841        572 HEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSN  605 (903)
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhc
Confidence            1222445677777889999999998888887654

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=90.03  E-value=1.1  Score=25.03  Aligned_cols=28  Identities=21%  Similarity=0.451  Sum_probs=24.0

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 020453          212 SLNKIGDLKYYGGDLQAARSYYVRSLNV  239 (326)
Q Consensus       212 ~~~~l~~l~~~~~~~~~a~~~~~~sl~~  239 (326)
                      ..-.++.+....+++++|+..|++++++
T Consensus         3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l   30 (34)
T PF07719_consen    3 AWYYLGQAYYQLGNYEEAIEYFEKALEL   30 (34)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            4567899999999999999999999876

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=89.97  E-value=11  Score=38.20  Aligned_cols=78  Identities=18%  Similarity=0.142  Sum_probs=46.4

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH----hhcCCCC---Cchhh-hHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 020453          213 LNKIGDLKYYGGDLQAARSYYVRSLNVRRDA----VKRHSNV---PSQVL-DVAVSLAKVADVDRSIGNEDVAVDGFQEA  284 (326)
Q Consensus       213 ~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~----~~~~~~~---~~~~~-~la~~l~~l~~~~~~~~~~~~a~~~~~~~  284 (326)
                      .+..+.-..+.|+.+.|+.+|..+-.-.-.+    .......   +.... +.| .--.||..|++.|+..+|+.+|.+|
T Consensus       915 ~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~A-AcYhlaR~YEn~g~v~~Av~FfTrA  993 (1416)
T KOG3617|consen  915 YSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKA-ACYHLARMYENDGDVVKAVKFFTRA  993 (1416)
T ss_pred             HHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHH-HHHHHHHHhhhhHHHHHHHHHHHHH
Confidence            3445555577899999999999876522100    0000000   00011 122 2235788999999999999999888


Q ss_pred             HHHHHHh
Q 020453          285 IKRLESL  291 (326)
Q Consensus       285 ~~~~~~l  291 (326)
                      ...-.-+
T Consensus       994 qafsnAI 1000 (1416)
T KOG3617|consen  994 QAFSNAI 1000 (1416)
T ss_pred             HHHHHHH
Confidence            6655433

>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=89.97  E-value=0.13  Score=46.04  Aligned_cols=43  Identities=30%  Similarity=0.824  Sum_probs=32.5

Q ss_pred             CCcccccccccccCCCeecccCCcch-HHhHhcCCCCCCCCcccc
Q 020453           22 GPLSCMICQALLFECSKCTPCSHVYC-KACISRFKDCPLCGADIE   65 (326)
Q Consensus        22 ~~l~C~iC~~~l~~~p~~l~C~h~fC-~~Cl~~~~~CP~Cr~~~~   65 (326)
                      ....|.||.+- +.+-+-+||||..| ..|-+....||.||....
T Consensus       304 ~p~lcVVcl~e-~~~~~fvpcGh~ccct~cs~~l~~CPvCR~rI~  347 (355)
T KOG1571|consen  304 QPDLCVVCLDE-PKSAVFVPCGHVCCCTLCSKHLPQCPVCRQRIR  347 (355)
T ss_pred             CCCceEEecCC-ccceeeecCCcEEEchHHHhhCCCCchhHHHHH
Confidence            45689999998 45599999999765 334455567999997654

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=89.81  E-value=7.4  Score=39.60  Aligned_cols=22  Identities=9%  Similarity=0.028  Sum_probs=12.1

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHH
Q 020453          215 KIGDLKYYGGDLQAARSYYVRS  236 (326)
Q Consensus       215 ~l~~l~~~~~~~~~a~~~~~~s  236 (326)
                      .+..+....+++++|+..+.+.
T Consensus       674 ~l~~~~~~~~~~~~A~~~~~~~  695 (899)
T TIGR02917       674 GLAQLLLAAKRTESAKKIAKSL  695 (899)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHH
Confidence            3444555556666666655544

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=89.73  E-value=5.6  Score=36.23  Aligned_cols=74  Identities=16%  Similarity=0.143  Sum_probs=53.9

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHH-----HHHHHHHH
Q 020453          210 SVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDV-----AVDGFQEA  284 (326)
Q Consensus       210 ~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~-----a~~~~~~~  284 (326)
                      +.....+++|+.+.++.+.|...|+++..++..+.++..+        +..+.-.+..++.+.-..+     |+++.++.
T Consensus       246 arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgq--------v~al~g~Akc~~~~r~~~k~~~Crale~n~r~  317 (518)
T KOG1941|consen  246 ARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQ--------VEALDGAAKCLETLRLQNKICNCRALEFNTRL  317 (518)
T ss_pred             HHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHH--------HHHHHHHHHHHHHHHHhhcccccchhHHHHHH
Confidence            4456678999999999999999999999999887777644        3344444544544444444     88888887


Q ss_pred             HHHHHHh
Q 020453          285 IKRLESL  291 (326)
Q Consensus       285 ~~~~~~l  291 (326)
                      +++-.++
T Consensus       318 levA~~I  324 (518)
T KOG1941|consen  318 LEVASSI  324 (518)
T ss_pred             HHHHHHh
Confidence            7777665

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=89.61  E-value=0.85  Score=40.72  Aligned_cols=26  Identities=19%  Similarity=0.108  Sum_probs=21.4

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 020453          213 LNKIGDLKYYGGDLQAARSYYVRSLN  238 (326)
Q Consensus       213 ~~~l~~l~~~~~~~~~a~~~~~~sl~  238 (326)
                      ++.|++.+..+|-+..|...|+.+++
T Consensus       226 k~Q~gkCylrLgm~r~AekqlqssL~  251 (478)
T KOG1129|consen  226 KQQMGKCYLRLGMPRRAEKQLQSSLT  251 (478)
T ss_pred             HHHHHHHHHHhcChhhhHHHHHHHhh
Confidence            35688888888988888888888876

>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length

Probab=89.61  E-value=0.049  Score=36.71  Aligned_cols=38  Identities=39%  Similarity=0.834  Sum_probs=22.5

Q ss_pred             CcccccccccccCCCeecccCCcchHHhHhcCCC---CCCCCcccc
Q 020453           23 PLSCMICQALLFECSKCTPCSHVYCKACISRFKD---CPLCGADIE   65 (326)
Q Consensus        23 ~l~C~iC~~~l~~~p~~l~C~h~fC~~Cl~~~~~---CP~Cr~~~~   65 (326)
                      ++.||.|...| + +..   ++-+|..|-..+..   ||.|..++.
T Consensus         1 e~~CP~C~~~L-~-~~~---~~~~C~~C~~~~~~~a~CPdC~~~Le   41 (70)
T PF07191_consen    1 ENTCPKCQQEL-E-WQG---GHYHCEACQKDYKKEAFCPDCGQPLE   41 (70)
T ss_dssp             --B-SSS-SBE-E-EET---TEEEETTT--EEEEEEE-TTT-SB-E
T ss_pred             CCcCCCCCCcc-E-EeC---CEEECccccccceecccCCCcccHHH
Confidence            47899999985 4 444   88889999987753   999998865

Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=89.41  E-value=5.8  Score=35.63  Aligned_cols=23  Identities=13%  Similarity=0.293  Sum_probs=11.3

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHH
Q 020453          264 VADVDRSIGNEDVAVDGFQEAIK  286 (326)
Q Consensus       264 l~~~~~~~~~~~~a~~~~~~~~~  286 (326)
                      ++.+++.+++++.|+++|+.+++
T Consensus       296 ~ARi~eam~~~~~a~~lYk~vlk  318 (478)
T KOG1129|consen  296 QARIHEAMEQQEDALQLYKLVLK  318 (478)
T ss_pred             hHHHHHHHHhHHHHHHHHHHHHh
Confidence            34445555555555555554443

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=89.19  E-value=1.3  Score=24.76  Aligned_cols=30  Identities=20%  Similarity=0.408  Sum_probs=26.1

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 020453          212 SLNKIGDLKYYGGDLQAARSYYVRSLNVRR  241 (326)
Q Consensus       212 ~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~  241 (326)
                      ..-.++.+...++++++|+..|++++++..
T Consensus         3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~   32 (34)
T PF13181_consen    3 AYYNLGKIYEQLGDYEEALEYFEKALELNP   32 (34)
T ss_dssp             HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            456789999999999999999999998753

...

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=89.06  E-value=1.2  Score=42.47  Aligned_cols=65  Identities=15%  Similarity=0.170  Sum_probs=47.1

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 020453          212 SLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQE  283 (326)
Q Consensus       212 ~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~  283 (326)
                      ..|++|.....-.+.++|++.|.++++++       +..+-..+.++.+.-|+|.-.+..+.+-.|+...+.
T Consensus       466 lWNRLGAtLAN~~~s~EAIsAY~rALqLq-------P~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~k  530 (579)
T KOG1125|consen  466 LWNRLGATLANGNRSEEAISAYNRALQLQ-------PGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRK  530 (579)
T ss_pred             HHHHhhHHhcCCcccHHHHHHHHHHHhcC-------CCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhc
Confidence            56788888877789999999999998863       444444556777777777666666666666665544

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=88.98  E-value=7.6  Score=32.35  Aligned_cols=99  Identities=16%  Similarity=0.218  Sum_probs=64.4

Q ss_pred             HHHHHHHHHHHHHhCCchhHhhHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHH-HHhcCC--HHHHHHHHHHHHHHHH
Q 020453          165 GAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDL-KYYGGD--LQAARSYYVRSLNVRR  241 (326)
Q Consensus       165 ~~~l~~~C~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~~~~i~~~~~~l~~l-~~~~~~--~~~a~~~~~~sl~~~~  241 (326)
                      .+.+..++......++...+...++.+..    +.+...++       ...++.+ ....++  +++|+..|+++++   
T Consensus        73 ~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~----l~P~~~~~-------~~~lA~aL~~~~g~~~~~~A~~~l~~al~---  138 (198)
T PRK10370         73 SEQWALLGEYYLWRNDYDNALLAYRQALQ----LRGENAEL-------YAALATVLYYQAGQHMTPQTREMIDKALA---  138 (198)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCCCCHHH-------HHHHHHHHHHhcCCCCcHHHHHHHHHHHH---
Confidence            34455566666677888877766654443    44544443       3455554 345555  4677776666644   


Q ss_pred             HHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 020453          242 DAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRL  288 (326)
Q Consensus       242 ~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~  288 (326)
                          ..+.+       ...+.++|..+..+|++++|+..++++++..
T Consensus       139 ----~dP~~-------~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~  174 (198)
T PRK10370        139 ----LDANE-------VTALMLLASDAFMQADYAQAIELWQKVLDLN  174 (198)
T ss_pred             ----hCCCC-------hhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence                34443       3567888999999999999999999886654

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=88.85  E-value=9.7  Score=32.63  Aligned_cols=28  Identities=14%  Similarity=0.135  Sum_probs=20.8

Q ss_pred             HHHHHHHHh-cCCHHHHHHHHHHHHHHHH
Q 020453          214 NKIGDLKYY-GGDLQAARSYYVRSLNVRR  241 (326)
Q Consensus       214 ~~l~~l~~~-~~~~~~a~~~~~~sl~~~~  241 (326)
                      -.|++++.+ +.++++|+.+|+++-+-.+
T Consensus       117 ~~iaEiyEsdl~d~ekaI~~YE~Aae~yk  145 (288)
T KOG1586|consen  117 IEIAEIYESDLQDFEKAIAHYEQAAEYYK  145 (288)
T ss_pred             hhHHHHHhhhHHHHHHHHHHHHHHHHHHc
Confidence            367777744 4789999999999876544

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=88.68  E-value=0.47  Score=40.15  Aligned_cols=54  Identities=17%  Similarity=0.118  Sum_probs=38.7

Q ss_pred             cCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 020453          223 GGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRL  288 (326)
Q Consensus       223 ~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~  288 (326)
                      +|++++|..+|+++++.        +.    ..+...++.|+|.+--..|+...|.++|++++.+.
T Consensus       116 qg~~~eA~q~F~~Al~~--------P~----Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d  169 (250)
T COG3063         116 QGRPEEAMQQFERALAD--------PA----YGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD  169 (250)
T ss_pred             CCChHHHHHHHHHHHhC--------CC----CCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC
Confidence            45677777777776431        11    22356788999988888899999998888887665

>PRK04841 transcriptional regulator MalT; Provisional

Probab=88.57  E-value=7.1  Score=40.55  Aligned_cols=72  Identities=15%  Similarity=0.141  Sum_probs=58.0

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 020453          212 SLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL  291 (326)
Q Consensus       212 ~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l  291 (326)
                      ....++.+....|++++|...|+++++..+.....        ...+..+.+++.++...|+++.|...+++++.+.+..
T Consensus       493 a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~--------~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~  564 (903)
T PRK04841        493 ATSVLGEVHHCKGELARALAMMQQTEQMARQHDVY--------HYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQ  564 (903)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcch--------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Confidence            45678888888999999999999999876643211        1335577889999999999999999999999988764

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=88.53  E-value=2.3  Score=36.51  Aligned_cols=62  Identities=18%  Similarity=0.164  Sum_probs=33.5

Q ss_pred             HHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 020453          220 KYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLES  290 (326)
Q Consensus       220 ~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  290 (326)
                      ...+..+.++..+|+++..+..+....+++        +..|.+-+.+.+. .+.++|+++|++++.++++
T Consensus        81 ake~~klsEvvdl~eKAs~lY~E~GspdtA--------AmaleKAak~len-v~Pd~AlqlYqralavve~  142 (308)
T KOG1585|consen   81 AKELSKLSEVVDLYEKASELYVECGSPDTA--------AMALEKAAKALEN-VKPDDALQLYQRALAVVEE  142 (308)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHhCCcchH--------HHHHHHHHHHhhc-CCHHHHHHHHHHHHHHHhc
Confidence            333344456666666666665554333332        4455555555555 4556666666666666544

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=88.37  E-value=12  Score=37.75  Aligned_cols=104  Identities=11%  Similarity=-0.050  Sum_probs=64.2

Q ss_pred             HHHHHHHHHHHHHHHHHHhCCchhHhhHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 020453          160 LCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNV  239 (326)
Q Consensus       160 ~C~~H~~~l~~~C~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~  239 (326)
                      .+|.|......|..+.....+..++....+.+.    ...+...       .....++.....+|++++|...|++.++ 
T Consensus       115 ~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l----~~~p~~~-------~~~~~~a~~l~~~g~~~~A~~~y~~~~~-  182 (694)
T PRK15179        115 RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYF----SGGSSSA-------REILLEAKSWDEIGQSEQADACFERLSR-  182 (694)
T ss_pred             hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHh----hcCCCCH-------HHHHHHHHHHHHhcchHHHHHHHHHHHh-
Confidence            455555554455555544444444443333222    1223333       3445677777888899999999998855 


Q ss_pred             HHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 020453          240 RRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRL  288 (326)
Q Consensus       240 ~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~  288 (326)
                            ..+..       ...+-++|.++..+|+.++|...|+++++..
T Consensus       183 ------~~p~~-------~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~  218 (694)
T PRK15179        183 ------QHPEF-------ENGYVGWAQSLTRRGALWRARDVLQAGLDAI  218 (694)
T ss_pred             ------cCCCc-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence                  22221       3456667888888899999998888887664

>PRK12370 invasion protein regulator; Provisional

Probab=88.34  E-value=1.5  Score=42.94  Aligned_cols=60  Identities=12%  Similarity=0.003  Sum_probs=39.0

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 020453          213 LNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIK  286 (326)
Q Consensus       213 ~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~  286 (326)
                      ...++.+....+++++|+..|++++++       .+.+       +..+..+|.++...|++++|+..+++++.
T Consensus       341 ~~~lg~~~~~~g~~~~A~~~~~~Al~l-------~P~~-------~~a~~~lg~~l~~~G~~~eAi~~~~~Al~  400 (553)
T PRK12370        341 LGLLGLINTIHSEYIVGSLLFKQANLL-------SPIS-------ADIKYYYGWNLFMAGQLEEALQTINECLK  400 (553)
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHh-------CCCC-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence            345677777788899999988888764       2221       23345566666666776666666665543

>PF04641 Rtf2: Rtf2 RING-finger

Probab=88.22  E-value=0.36  Score=42.26  Aligned_cols=44  Identities=23%  Similarity=0.627  Sum_probs=35.6

Q ss_pred             cCCcccccccccccCC----CeecccCCcchHHhHhcCC---CCCCCCcccc
Q 020453           21 IGPLSCMICQALLFEC----SKCTPCSHVYCKACISRFK---DCPLCGADIE   65 (326)
Q Consensus        21 ~~~l~C~iC~~~l~~~----p~~l~C~h~fC~~Cl~~~~---~CP~Cr~~~~   65 (326)
                      ...+.|||....| +.    -...+|||.|+..++....   .||.|..++.
T Consensus       111 ~~~~~CPvt~~~~-~~~~~fv~l~~cG~V~s~~alke~k~~~~Cp~c~~~f~  161 (260)
T PF04641_consen  111 EGRFICPVTGKEF-NGKHKFVYLRPCGCVFSEKALKELKKSKKCPVCGKPFT  161 (260)
T ss_pred             CceeECCCCCccc-CCceeEEEEcCCCCEeeHHHHHhhcccccccccCCccc
Confidence            4678999999884 42    2334899999999998875   5999999998

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=88.17  E-value=1.3  Score=26.14  Aligned_cols=32  Identities=16%  Similarity=0.285  Sum_probs=28.6

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 020453          260 SLAKVADVDRSIGNEDVAVDGFQEAIKRLESL  291 (326)
Q Consensus       260 ~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l  291 (326)
                      .+..||++-...+++.+|++-|++++++.+++
T Consensus         3 v~~~Lgeisle~e~f~qA~~D~~~aL~i~~~l   34 (38)
T PF10516_consen    3 VYDLLGEISLENENFEQAIEDYEKALEIQEEL   34 (38)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh
Confidence            46678888888899999999999999999886

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=88.16  E-value=12  Score=29.95  Aligned_cols=105  Identities=12%  Similarity=0.000  Sum_probs=73.6

Q ss_pred             HHHHHHHhCCchhHhhHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCC
Q 020453          171 LGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNV  250 (326)
Q Consensus       171 ~C~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~  250 (326)
                      +..-....|+..++..+++....    +.       ..-..-.-+++-+...++++++|+..|.++..+.       +++
T Consensus        41 ~A~~ly~~G~l~~A~~~f~~L~~----~D-------p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-------~dd  102 (157)
T PRK15363         41 YAMQLMEVKEFAGAARLFQLLTI----YD-------AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-------IDA  102 (157)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHH----hC-------cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-------CCC
Confidence            33444567777877777654322    22       2223455689999999999999999999986652       222


Q ss_pred             CchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHhh
Q 020453          251 PSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQR  303 (326)
Q Consensus       251 ~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~p~~~~~~~~  303 (326)
                             ....-+.|.++-.+|+.+.|.+.|+.++....   .+|....+.++
T Consensus       103 -------p~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~---~~~~~~~l~~~  145 (157)
T PRK15363        103 -------PQAPWAAAECYLACDNVCYAIKALKAVVRICG---EVSEHQILRQR  145 (157)
T ss_pred             -------chHHHHHHHHHHHcCCHHHHHHHHHHHHHHhc---cChhHHHHHHH
Confidence                   34667889999999999999999999999884   34555444443

>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]

Probab=88.12  E-value=0.25  Score=43.18  Aligned_cols=41  Identities=29%  Similarity=0.765  Sum_probs=29.9

Q ss_pred             ccccccccccCCCeecccCCcchHHhHhcCC--CCCCCCcccc
Q 020453           25 SCMICQALLFECSKCTPCSHVYCKACISRFK--DCPLCGADIE   65 (326)
Q Consensus        25 ~C~iC~~~l~~~p~~l~C~h~fC~~Cl~~~~--~CP~Cr~~~~   65 (326)
                      .|--|---+..=-+++||.|.||..|.....  .||.|...+.
T Consensus        92 fCd~Cd~PI~IYGRmIPCkHvFCl~CAr~~~dK~Cp~C~d~Vq  134 (389)
T KOG2932|consen   92 FCDRCDFPIAIYGRMIPCKHVFCLECARSDSDKICPLCDDRVQ  134 (389)
T ss_pred             eecccCCcceeeecccccchhhhhhhhhcCccccCcCcccHHH
Confidence            4667765333336889999999999997554  5999986543

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=88.11  E-value=1.6  Score=38.38  Aligned_cols=97  Identities=13%  Similarity=0.123  Sum_probs=61.5

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcC
Q 020453          215 KIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLK  294 (326)
Q Consensus       215 ~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~  294 (326)
                      .+++-....|.-...-..|+.++....+..+-.+.+       ++-+.+-+.+|..+|+++.|++--+.++.+      +
T Consensus        79 ~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~n-------AVyycNRAAAy~~Lg~~~~AVkDce~Al~i------D  145 (304)
T KOG0553|consen   79 ALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTN-------AVYYCNRAAAYSKLGEYEDAVKDCESALSI------D  145 (304)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCc-------chHHHHHHHHHHHhcchHHHHHHHHHHHhc------C
Confidence            344444466777777788999999999988888776       456677777888888877777555444433      2


Q ss_pred             CCchhHHhhccchhhhHHHHhHHhcCcccccC
Q 020453          295 PEEAGLEQRCWNSSTTNFQKNHLNQLPKFRSA  326 (326)
Q Consensus       295 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (326)
                      |.-...-.++  +..+..+|++..++..|++|
T Consensus       146 p~yskay~RL--G~A~~~~gk~~~A~~aykKa  175 (304)
T KOG0553|consen  146 PHYSKAYGRL--GLAYLALGKYEEAIEAYKKA  175 (304)
T ss_pred             hHHHHHHHHH--HHHHHccCcHHHHHHHHHhh
Confidence            2222233344  55555555555555555543

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=88.05  E-value=2.8  Score=39.80  Aligned_cols=106  Identities=22%  Similarity=0.213  Sum_probs=67.3

Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH------------HhhcCCCCCchhhhHHHHHHHHHHHHHhcCCH
Q 020453          207 HTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRD------------AVKRHSNVPSQVLDVAVSLAKVADVDRSIGNE  274 (326)
Q Consensus       207 ~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~------------~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~  274 (326)
                      ..|+..+..+|..+...++++.++.+|++++...+.            ...........-.+++.....-|......|+|
T Consensus       295 klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy  374 (539)
T KOG0548|consen  295 KLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDY  374 (539)
T ss_pred             HHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCH
Confidence            346667777888888889999999999998874432            00000000001113344444457788888999


Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCchhHHhhccchhhhHHHHhHHhcC
Q 020453          275 DVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQL  320 (326)
Q Consensus       275 ~~a~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~  320 (326)
                      ..|+..|.+++.      .+|+++.+-.|.  +-.+..++++..++
T Consensus       375 ~~Av~~YteAIk------r~P~Da~lYsNR--Aac~~kL~~~~~aL  412 (539)
T KOG0548|consen  375 PEAVKHYTEAIK------RDPEDARLYSNR--AACYLKLGEYPEAL  412 (539)
T ss_pred             HHHHHHHHHHHh------cCCchhHHHHHH--HHHHHHHhhHHHHH
Confidence            999999998553      347776666666  66666666555443

>PRK12370 invasion protein regulator; Provisional

Probab=87.99  E-value=4.9  Score=39.34  Aligned_cols=28  Identities=18%  Similarity=0.115  Sum_probs=22.2

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 020453          212 SLNKIGDLKYYGGDLQAARSYYVRSLNV  239 (326)
Q Consensus       212 ~~~~l~~l~~~~~~~~~a~~~~~~sl~~  239 (326)
                      ....++.+....|++++|+..|++++++
T Consensus       374 a~~~lg~~l~~~G~~~eAi~~~~~Al~l  401 (553)
T PRK12370        374 IKYYYGWNLFMAGQLEEALQTINECLKL  401 (553)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence            3456777888889999999999988764

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=87.84  E-value=6.8  Score=34.35  Aligned_cols=65  Identities=23%  Similarity=0.336  Sum_probs=48.6

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 020453          212 SLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR  287 (326)
Q Consensus       212 ~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~  287 (326)
                      +.-.+|.++...+++++|+..|++.++..-       .+.    .....+-++|.++..+|++++|...|++.+..
T Consensus       182 A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP-------~s~----~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~  246 (263)
T PRK10803        182 ANYWLGQLNYNKGKKDDAAYYFASVVKNYP-------KSP----KAADAMFKVGVIMQDKGDTAKAKAVYQQVIKK  246 (263)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-------CCc----chhHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            456899999999999999999988765422       211    12445667888999999999999888866543

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=87.66  E-value=15  Score=38.59  Aligned_cols=63  Identities=13%  Similarity=0.160  Sum_probs=50.4

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 020453          212 SLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRL  288 (326)
Q Consensus       212 ~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~  288 (326)
                      ...+++.+....|++++|+..|++++++       .+.+       ...+.++|.++..+|++++|+..|++++.+-
T Consensus       645 a~~nLG~aL~~~G~~eeAi~~l~~AL~l-------~P~~-------~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~  707 (987)
T PRK09782        645 YQAALGYALWDSGDIAQSREMLERAHKG-------LPDD-------PALIRQLAYVNQRLDDMAATQHYARLVIDDI  707 (987)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHh-------CCCC-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence            4567888888899999999999988664       3332       4567789999999999999999988887543

>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A

Probab=87.59  E-value=0.11  Score=35.44  Aligned_cols=43  Identities=26%  Similarity=0.729  Sum_probs=18.9

Q ss_pred             CcccccccccccCC---Ceec----ccCCcchHHhHhcCC---------------CCCCCCcccc
Q 020453           23 PLSCMICQALLFEC---SKCT----PCSHVYCKACISRFK---------------DCPLCGADIE   65 (326)
Q Consensus        23 ~l~C~iC~~~l~~~---p~~l----~C~h~fC~~Cl~~~~---------------~CP~Cr~~~~   65 (326)
                      ++.|+||...+...   |...    .|+..|=..||..|+               .||.|+..+.
T Consensus         2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~   66 (70)
T PF11793_consen    2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS   66 (70)
T ss_dssp             --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred             CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence            57899999874422   2211    466666678998884               1999998764

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=87.57  E-value=9.2  Score=27.99  Aligned_cols=93  Identities=18%  Similarity=0.216  Sum_probs=58.8

Q ss_pred             HHhCCchhHhhHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhh
Q 020453          176 RAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVL  255 (326)
Q Consensus       176 ~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~  255 (326)
                      ...++...+....+.+...    .+...    ......-.++.+....++++.|+..|++.+...       +...    
T Consensus        13 ~~~~~~~~A~~~~~~~~~~----~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-------p~~~----   73 (119)
T TIGR02795        13 LKAGDYADAIQAFQAFLKK----YPKST----YAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKY-------PKSP----   73 (119)
T ss_pred             HHcCCHHHHHHHHHHHHHH----CCCcc----ccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHC-------CCCC----
Confidence            3456666666665554422    11111    112344568888889999999999999886532       1111    


Q ss_pred             hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 020453          256 DVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR  287 (326)
Q Consensus       256 ~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~  287 (326)
                      .....+..++.++..+|++++|+..+++++..
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~  105 (119)
T TIGR02795        74 KAPDALLKLGMSLQELGDKEKAKATLQQVIKR  105 (119)
T ss_pred             cccHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence            11345677888899999999999888766654

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=87.32  E-value=5.6  Score=31.09  Aligned_cols=90  Identities=18%  Similarity=0.190  Sum_probs=56.9

Q ss_pred             HHHHHhCCchhHhhHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCc
Q 020453          173 DCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPS  252 (326)
Q Consensus       173 ~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~  252 (326)
                      ......++...+...++.+....     ....+.   ....-.++.+....+++++|+..++..       .. . .   
T Consensus        56 ~~~~~~g~~~~A~~~l~~~~~~~-----~d~~l~---~~a~l~LA~~~~~~~~~d~Al~~L~~~-------~~-~-~---  115 (145)
T PF09976_consen   56 KAAYEQGDYDEAKAALEKALANA-----PDPELK---PLARLRLARILLQQGQYDEALATLQQI-------PD-E-A---  115 (145)
T ss_pred             HHHHHCCCHHHHHHHHHHHHhhC-----CCHHHH---HHHHHHHHHHHHHcCCHHHHHHHHHhc-------cC-c-c---
Confidence            34445677766666655544321     111222   223346888889999999999877441       11 0 0   


Q ss_pred             hhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 020453          253 QVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAI  285 (326)
Q Consensus       253 ~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~  285 (326)
                         -.......+|+++...|++++|...|++++
T Consensus       116 ---~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al  145 (145)
T PF09976_consen  116 ---FKALAAELLGDIYLAQGDYDEARAAYQKAL  145 (145)
T ss_pred             ---hHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence               112345568999999999999999999874

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=87.11  E-value=2.3  Score=43.22  Aligned_cols=59  Identities=20%  Similarity=0.152  Sum_probs=45.3

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHhhccchhhhHHHHhHHhcCcccccC
Q 020453          264 VADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRSA  326 (326)
Q Consensus       264 l~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (326)
                      ++.+|+. ++..+++.+|+.|+.++..... +--+.+++|+  +++...+|+..+|...|++|
T Consensus       420 laql~e~-~d~~~sL~~~~~A~d~L~~~~~-~ip~E~LNNv--aslhf~~g~~~~A~~~f~~A  478 (1018)
T KOG2002|consen  420 LAQLLEQ-TDPWASLDAYGNALDILESKGK-QIPPEVLNNV--ASLHFRLGNIEKALEHFKSA  478 (1018)
T ss_pred             HHHHHHh-cChHHHHHHHHHHHHHHHHcCC-CCCHHHHHhH--HHHHHHhcChHHHHHHHHHH
Confidence            4556666 6666779999999999987621 2224689999  99999999999998888765

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=87.10  E-value=5.6  Score=30.27  Aligned_cols=61  Identities=23%  Similarity=0.234  Sum_probs=43.3

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 020453          215 KIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIK  286 (326)
Q Consensus       215 ~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~  286 (326)
                      +++......|+.++|+..|+++++.     +-...      .....+-.++..+..+|++++|+..+++.+.
T Consensus         6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~-----gL~~~------~~~~a~i~lastlr~LG~~deA~~~L~~~~~   66 (120)
T PF12688_consen    6 ELAWAHDSLGREEEAIPLYRRALAA-----GLSGA------DRRRALIQLASTLRNLGRYDEALALLEEALE   66 (120)
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHc-----CCCch------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            3555667889999999999999762     11111      1233445688999999999999988876653

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=86.72  E-value=3.1  Score=29.06  Aligned_cols=57  Identities=14%  Similarity=0.175  Sum_probs=40.5

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 020453          213 LNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEA  284 (326)
Q Consensus       213 ~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~  284 (326)
                      .-.++.+....+++++|+..+.+ ++....              .....-.+|.++..+|++++|++.|+++
T Consensus        28 ~~~la~~~~~~~~y~~A~~~~~~-~~~~~~--------------~~~~~~l~a~~~~~l~~y~eAi~~l~~~   84 (84)
T PF12895_consen   28 LYNLAQCYFQQGKYEEAIELLQK-LKLDPS--------------NPDIHYLLARCLLKLGKYEEAIKALEKA   84 (84)
T ss_dssp             HHHHHHHHHHTTHHHHHHHHHHC-HTHHHC--------------HHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHH-hCCCCC--------------CHHHHHHHHHHHHHhCCHHHHHHHHhcC
Confidence            34589999999999999998887 222111              1222334589999999999999988864

>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=86.62  E-value=0.29  Score=43.38  Aligned_cols=51  Identities=33%  Similarity=0.764  Sum_probs=39.3

Q ss_pred             CCCCCcccCCcccccccccccCCCeecccCCcchHHhHhcCC------CCCCCCcccc
Q 020453           14 YDAQSFKIGPLSCMICQALLFECSKCTPCSHVYCKACISRFK------DCPLCGADIE   65 (326)
Q Consensus        14 ~~~~~~~~~~l~C~iC~~~l~~~p~~l~C~h~fC~~Cl~~~~------~CP~Cr~~~~   65 (326)
                      .+.+....+...|-||-.-+ +=.-.+||+|..|.-|-.+..      .||.||....
T Consensus        52 sSaddtDEen~~C~ICA~~~-TYs~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE~e  108 (493)
T COG5236          52 SSADDTDEENMNCQICAGST-TYSARYPCGHQICHACAVRLRALYMQKGCPLCRTETE  108 (493)
T ss_pred             ccccccccccceeEEecCCc-eEEEeccCCchHHHHHHHHHHHHHhccCCCccccccc
Confidence            33444555778999999973 546889999999999987652      4999998765

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=86.32  E-value=7.6  Score=32.92  Aligned_cols=64  Identities=14%  Similarity=0.050  Sum_probs=45.5

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 020453          214 NKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRL  288 (326)
Q Consensus       214 ~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~  288 (326)
                      -..+......+++++|+..|++.++..       +.+.    ........+|.++...|++++|+..|++++...
T Consensus        37 ~~~g~~~~~~~~~~~A~~~~~~~~~~~-------p~~~----~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~  100 (235)
T TIGR03302        37 YEEAKEALDSGDYTEAIKYFEALESRY-------PFSP----YAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH  100 (235)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCch----hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC
Confidence            455666677899999999888875542       2211    122345678899999999999999988877543

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=86.26  E-value=0.3  Score=30.88  Aligned_cols=41  Identities=20%  Similarity=0.426  Sum_probs=19.4

Q ss_pred             CcccccccccccCCCeecccCCcchHHhH--------hcCCCCCCCCcc
Q 020453           23 PLSCMICQALLFECSKCTPCSHVYCKACI--------SRFKDCPLCGAD   63 (326)
Q Consensus        23 ~l~C~iC~~~l~~~p~~l~C~h~fC~~Cl--------~~~~~CP~Cr~~   63 (326)
                      .|.||+....+..+-+...|.|.-|-+=.        .+.|.||.|.++
T Consensus         2 sL~CPls~~~i~~P~Rg~~C~H~~CFDl~~fl~~~~~~~~W~CPiC~~~   50 (50)
T PF02891_consen    2 SLRCPLSFQRIRIPVRGKNCKHLQCFDLESFLESNQRTPKWKCPICNKP   50 (50)
T ss_dssp             ESB-TTTSSB-SSEEEETT--SS--EEHHHHHHHHHHS---B-TTT---
T ss_pred             eeeCCCCCCEEEeCccCCcCcccceECHHHHHHHhhccCCeECcCCcCc
Confidence            37899999886665556789997664321        223779999863

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=85.82  E-value=0.46  Score=31.38  Aligned_cols=54  Identities=17%  Similarity=0.148  Sum_probs=38.8

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHhhccchhhhHHHHhHHhcCccccc
Q 020453          264 VADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRS  325 (326)
Q Consensus       264 l~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (326)
                      +|..+...|++++|+..|++++      ..+|.+......+  +.++...|++.++...|++
T Consensus         3 ~a~~~~~~g~~~~A~~~~~~~l------~~~P~~~~a~~~l--g~~~~~~g~~~~A~~~~~~   56 (65)
T PF13432_consen    3 LARALYQQGDYDEAIAAFEQAL------KQDPDNPEAWYLL--GRILYQQGRYDEALAYYER   56 (65)
T ss_dssp             HHHHHHHCTHHHHHHHHHHHHH------CCSTTHHHHHHHH--HHHHHHTT-HHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHH------HHCCCCHHHHHHH--HHHHHHcCCHHHHHHHHHH
Confidence            5677778888777776665433      5668887777777  8888888888888777764

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=85.71  E-value=4.1  Score=35.16  Aligned_cols=22  Identities=9%  Similarity=-0.164  Sum_probs=12.0

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHH
Q 020453          260 SLAKVADVDRSIGNEDVAVDGF  281 (326)
Q Consensus       260 ~l~~l~~~~~~~~~~~~a~~~~  281 (326)
                      .++|++..+...|+++.|..++
T Consensus       170 ~~nNlgms~~L~gd~~~A~~ll  191 (257)
T COG5010         170 IANNLGMSLLLRGDLEDAETLL  191 (257)
T ss_pred             hhhhHHHHHHHcCCHHHHHHHH
Confidence            3556665565656655555443

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=85.23  E-value=0.96  Score=42.30  Aligned_cols=64  Identities=14%  Similarity=0.128  Sum_probs=48.2

Q ss_pred             hhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCch---hHHhhccchhhhHHHHhHHhcCcccccC
Q 020453          255 LDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEA---GLEQRCWNSSTTNFQKNHLNQLPKFRSA  326 (326)
Q Consensus       255 ~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~p~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (326)
                      -+.+....|+|.++..+|+|++|+..|++++++      +|+++   ....|+  +..+..+|+..+++..|++|
T Consensus        72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL------~Pd~aeA~~A~yNL--Acaya~LGr~dEAla~LrrA  138 (453)
T PLN03098         72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALEL------NPNPDEAQAAYYNK--ACCHAYREEGKKAADCLRTA  138 (453)
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh------CCCchHHHHHHHHH--HHHHHHcCCHHHHHHHHHHH
Confidence            356778899999999999999999999988765      35544   345666  77777777777776666543

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=85.06  E-value=1.2  Score=43.12  Aligned_cols=107  Identities=16%  Similarity=0.145  Sum_probs=66.2

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH------hhcCCCCCchhhhHH---------------HHHHHHHHHHH
Q 020453          211 VSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDA------VKRHSNVPSQVLDVA---------------VSLAKVADVDR  269 (326)
Q Consensus       211 ~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~------~~~~~~~~~~~~~la---------------~~l~~l~~~~~  269 (326)
                      +..--+|....-+++.+.|+..|++++++-...      .+.+. .....+|.|               +..--||.+|.
T Consensus       422 esWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~-~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~  500 (638)
T KOG1126|consen  422 ESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHES-IATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYL  500 (638)
T ss_pred             HHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChh-hhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhhee
Confidence            344556777777889999999999999854310      00000 000111111               11122568888


Q ss_pred             hcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHhhccchhhhHHHHhHHhcCcccccC
Q 020453          270 SIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRSA  326 (326)
Q Consensus       270 ~~~~~~~a~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (326)
                      .+++++.|.-.|++|++|      +|.+-.++-.+  +..+..++...+++..|++|
T Consensus       501 Kqek~e~Ae~~fqkA~~I------NP~nsvi~~~~--g~~~~~~k~~d~AL~~~~~A  549 (638)
T KOG1126|consen  501 KQEKLEFAEFHFQKAVEI------NPSNSVILCHI--GRIQHQLKRKDKALQLYEKA  549 (638)
T ss_pred             ccchhhHHHHHHHhhhcC------CccchhHHhhh--hHHHHHhhhhhHHHHHHHHH
Confidence            888888888888777653      56666666666  77777777777777666654

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=84.95  E-value=2.5  Score=25.50  Aligned_cols=38  Identities=21%  Similarity=0.298  Sum_probs=27.9

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHhh
Q 020453          260 SLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQR  303 (326)
Q Consensus       260 ~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~p~~~~~~~~  303 (326)
                      .+..++.++..+|++++|++.|+++++      .+|++..+...
T Consensus         3 ~~~~la~~~~~~G~~~~A~~~~~~~l~------~~P~~~~a~~~   40 (44)
T PF13428_consen    3 AWLALARAYRRLGQPDEAERLLRRALA------LDPDDPEAWRA   40 (44)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHH------HCcCCHHHHHH
Confidence            345688999999999999988886665      45666554443

>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=83.91  E-value=0.52  Score=39.61  Aligned_cols=39  Identities=26%  Similarity=0.679  Sum_probs=31.7

Q ss_pred             cccccccccCCCeecccCC-cchHHhHhcCCCCCCCCcccc
Q 020453           26 CMICQALLFECSKCTPCSH-VYCKACISRFKDCPLCGADIE   65 (326)
Q Consensus        26 C~iC~~~l~~~p~~l~C~h-~fC~~Cl~~~~~CP~Cr~~~~   65 (326)
                      |-.|... -..-.++||.| .+|..|-.....||.|+....
T Consensus       161 Cr~C~~~-~~~VlllPCrHl~lC~~C~~~~~~CPiC~~~~~  200 (207)
T KOG1100|consen  161 CRKCGER-EATVLLLPCRHLCLCGICDESLRICPICRSPKT  200 (207)
T ss_pred             ceecCcC-CceEEeecccceEecccccccCccCCCCcChhh
Confidence            9999987 34477899999 789999987666999997654

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=83.52  E-value=1.7  Score=40.47  Aligned_cols=32  Identities=25%  Similarity=0.260  Sum_probs=23.6

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 020453          258 AVSLAKVADVDRSIGNEDVAVDGFQEAIKRLE  289 (326)
Q Consensus       258 a~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~  289 (326)
                      ...|-++|..++.+|+.++|++.|-+.-.|+.
T Consensus       524 ~ealfniglt~e~~~~ldeald~f~klh~il~  555 (840)
T KOG2003|consen  524 TEALFNIGLTAEALGNLDEALDCFLKLHAILL  555 (840)
T ss_pred             HHHHHHhcccHHHhcCHHHHHHHHHHHHHHHH
Confidence            34566788888899999999887766555543

>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]

Probab=83.42  E-value=0.36  Score=47.24  Aligned_cols=43  Identities=35%  Similarity=0.802  Sum_probs=35.7

Q ss_pred             CCcccccccccccCCCeecccCCcchHHhHhcCC-------CCCCCCcccc
Q 020453           22 GPLSCMICQALLFECSKCTPCSHVYCKACISRFK-------DCPLCGADIE   65 (326)
Q Consensus        22 ~~l~C~iC~~~l~~~p~~l~C~h~fC~~Cl~~~~-------~CP~Cr~~~~   65 (326)
                      -.+.|+||....++ |+.+.|.|.||..|+...+       .||.|+....
T Consensus        20 k~lEc~ic~~~~~~-p~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~e   69 (684)
T KOG4362|consen   20 KILECPICLEHVKE-PSLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIE   69 (684)
T ss_pred             hhccCCceeEEeec-cchhhhhHHHHhhhhhceeeccCccccchhhhhhhh
Confidence            57899999998455 9999999999999997653       3999986665

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=83.15  E-value=2.1  Score=38.87  Aligned_cols=70  Identities=20%  Similarity=0.122  Sum_probs=43.5

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 020453          215 KIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRL  288 (326)
Q Consensus       215 ~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~  288 (326)
                      .++++...++++++|..+..++.++.+...-....    .-..+.++-.++-.+..+|..-.|.++-+++.++-
T Consensus       167 ~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~----~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~kla  236 (518)
T KOG1941|consen  167 SLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWS----LKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLA  236 (518)
T ss_pred             hHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchh----HHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHH
Confidence            57888888889999999999998887764322111    01233444555555666666555555555555443

>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function

Probab=82.93  E-value=0.87  Score=35.98  Aligned_cols=21  Identities=24%  Similarity=0.418  Sum_probs=16.0

Q ss_pred             CCcccccccccccCCCeecccC
Q 020453           22 GPLSCMICQALLFECSKCTPCS   43 (326)
Q Consensus        22 ~~l~C~iC~~~l~~~p~~l~C~   43 (326)
                      ++.+||||++. .-+-|.|-|.
T Consensus         1 ed~~CpICme~-PHNAVLLlCS   21 (162)
T PF07800_consen    1 EDVTCPICMEH-PHNAVLLLCS   21 (162)
T ss_pred             CCccCceeccC-CCceEEEEec
Confidence            46799999999 4558888653

The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=82.79  E-value=16  Score=37.46  Aligned_cols=74  Identities=14%  Similarity=0.220  Sum_probs=54.9

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 020453          210 SVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR  287 (326)
Q Consensus       210 ~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~  287 (326)
                      .+.+|+++.+...+|.+.+|...|.+++.........+....    -.+...-|++.+.+.+++++.|.+.|.+++.-
T Consensus       452 ~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~----~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke  525 (1018)
T KOG2002|consen  452 PEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKS----TNLTLKYNLARLLEELHDTEVAEEMYKSILKE  525 (1018)
T ss_pred             HHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCcccccc----chhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence            357899999999999999999999999887544333222100    01334558899999999999999888877654

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=82.56  E-value=1.3  Score=29.86  Aligned_cols=52  Identities=12%  Similarity=0.118  Sum_probs=34.3

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHhhccchhhhHHHHhHHhcCcccc
Q 020453          265 ADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFR  324 (326)
Q Consensus       265 ~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (326)
                      ..++...+++++|++.++.++.      .+|+++.+....  +.++..+|++.+++..|+
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~------~~p~~~~~~~~~--a~~~~~~g~~~~A~~~l~   53 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALE------LDPDDPELWLQR--ARCLFQLGRYEEALEDLE   53 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHH------hCcccchhhHHH--HHHHHHhccHHHHHHHHH
Confidence            4566777887777766665444      366666666656  777777777777766554

>smart00028 TPR Tetratricopeptide repeats

Probab=82.32  E-value=2.4  Score=22.18  Aligned_cols=28  Identities=18%  Similarity=0.361  Sum_probs=23.4

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 020453          260 SLAKVADVDRSIGNEDVAVDGFQEAIKR  287 (326)
Q Consensus       260 ~l~~l~~~~~~~~~~~~a~~~~~~~~~~  287 (326)
                      .+.++|.++..+|++++|...+++++.+
T Consensus         3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~   30 (34)
T smart00028        3 ALYNLGNAYLKLGDYDEALEYYEKALEL   30 (34)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence            4567889999999999999999887754

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=82.05  E-value=8.8  Score=33.63  Aligned_cols=61  Identities=20%  Similarity=0.233  Sum_probs=27.0

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 020453          215 KIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLE  289 (326)
Q Consensus       215 ~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~  289 (326)
                      .++.....+|++++|+..|++.++.       .+.+       ...+..+|+++...|+.++|...+.++...++
T Consensus       219 ~la~~~~~lg~~~~Al~~~~~~~~~-------~p~d-------~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~l~  279 (280)
T PF13429_consen  219 ALAAAYLQLGRYEEALEYLEKALKL-------NPDD-------PLWLLAYADALEQAGRKDEALRLRRQALRLLR  279 (280)
T ss_dssp             HHHHHHHHHT-HHHHHHHHHHHHHH-------STT--------HHHHHHHHHHHT--------------------
T ss_pred             HHHHHhccccccccccccccccccc-------cccc-------cccccccccccccccccccccccccccccccC
Confidence            4566667778888888888876543       3332       34566789999999999999999998887664

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=81.75  E-value=8.6  Score=38.93  Aligned_cols=90  Identities=18%  Similarity=0.135  Sum_probs=62.7

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 020453          211 VSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLES  290 (326)
Q Consensus       211 ~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  290 (326)
                      ...-.+.+...+.+.+..|+.+|.....       ......      +...-++|..+..+|.++.|+++|+.++.    
T Consensus       415 dL~~d~a~al~~~~~~~~Al~~l~~i~~-------~~~~~~------~~vw~~~a~c~~~l~e~e~A~e~y~kvl~----  477 (895)
T KOG2076|consen  415 DLYLDLADALTNIGKYKEALRLLSPITN-------REGYQN------AFVWYKLARCYMELGEYEEAIEFYEKVLI----  477 (895)
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHhc-------Cccccc------hhhhHHHHHHHHHHhhHHHHHHHHHHHHh----
Confidence            3455677777778888888888776532       222211      34556678888888888888888886653    


Q ss_pred             hhcCCCchhHHhhccchhhhHHHHhHHhcCc
Q 020453          291 LTLKPEEAGLEQRCWNSSTTNFQKNHLNQLP  321 (326)
Q Consensus       291 l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (326)
                        ..|++.+.+..+  .+++.-+|++.++++
T Consensus       478 --~~p~~~D~Ri~L--asl~~~~g~~EkalE  504 (895)
T KOG2076|consen  478 --LAPDNLDARITL--ASLYQQLGNHEKALE  504 (895)
T ss_pred             --cCCCchhhhhhH--HHHHHhcCCHHHHHH
Confidence              467777777777  888888887777654

>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=81.34  E-value=0.29  Score=49.15  Aligned_cols=44  Identities=30%  Similarity=0.861  Sum_probs=33.0

Q ss_pred             CCcccccccccccCC------CeecccCCcchHHhHhcCCC------CCCCCcccc
Q 020453           22 GPLSCMICQALLFEC------SKCTPCSHVYCKACISRFKD------CPLCGADIE   65 (326)
Q Consensus        22 ~~l~C~iC~~~l~~~------p~~l~C~h~fC~~Cl~~~~~------CP~Cr~~~~   65 (326)
                      +.-.|+||.-+|.--      -++-.|.|-|=.+|+-.|+.      ||.||..++
T Consensus      1468 G~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219        1468 GHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred             CcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence            456799998775411      23345999999999999963      999997654

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=81.10  E-value=14  Score=30.20  Aligned_cols=74  Identities=11%  Similarity=0.091  Sum_probs=43.2

Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh-hcCCCchhHHh
Q 020453          226 LQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL-TLKPEEAGLEQ  302 (326)
Q Consensus       226 ~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l-~~~p~~~~~~~  302 (326)
                      -.++...++.++...++...-++.....+..+...+..+|.   ...+..+|.++|+++..-+++. ..+|.+.....
T Consensus        44 g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~---l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~k  118 (186)
T PF06552_consen   44 GPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAF---LTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRK  118 (186)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH---H---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHH
T ss_pred             cchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHh---hcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHH
Confidence            34556666677666666666677765555555555555553   2244567778888888888777 66777654443

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=80.98  E-value=22  Score=26.91  Aligned_cols=94  Identities=13%  Similarity=0.046  Sum_probs=61.1

Q ss_pred             HHHHHHHHhCCchhHhhHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCC
Q 020453          170 MLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSN  249 (326)
Q Consensus       170 ~~C~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~  249 (326)
                      .++......+++..+....+....    +.+...       .....++.+....+++++|+..|++++++       .+.
T Consensus        22 ~~a~~~~~~~~~~~A~~~~~~~~~----~~p~~~-------~~~~~la~~~~~~~~~~~A~~~~~~~~~~-------~p~   83 (135)
T TIGR02552        22 ALAYNLYQQGRYDEALKLFQLLAA----YDPYNS-------RYWLGLAACCQMLKEYEEAIDAYALAAAL-------DPD   83 (135)
T ss_pred             HHHHHHHHcccHHHHHHHHHHHHH----hCCCcH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------CCC
Confidence            344444556666666655543322    233322       23456777777788888988888887664       222


Q ss_pred             CCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 020453          250 VPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRL  288 (326)
Q Consensus       250 ~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~  288 (326)
                             ......++|.++...|++++|+..+++++...
T Consensus        84 -------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  115 (135)
T TIGR02552        84 -------DPRPYFHAAECLLALGEPESALKALDLAIEIC  115 (135)
T ss_pred             -------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence                   23456778999999999999999888776643

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking

Probab=80.66  E-value=7.3  Score=26.17  Aligned_cols=35  Identities=31%  Similarity=0.317  Sum_probs=29.3

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 020453          257 VAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL  291 (326)
Q Consensus       257 la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l  291 (326)
                      .+..+-+.|...+..|++++|+++|.++++.+-..
T Consensus         4 ~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~   38 (69)
T PF04212_consen    4 KAIELIKKAVEADEAGNYEEALELYKEAIEYLMQA   38 (69)
T ss_dssp             HHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence            34556666777788899999999999999999887

; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=80.58  E-value=23  Score=29.93  Aligned_cols=68  Identities=22%  Similarity=0.257  Sum_probs=45.2

Q ss_pred             HHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 020453          219 LKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR  287 (326)
Q Consensus       219 l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~  287 (326)
                      +...+++.+....+++++++..++..+.+..-.. ..+.+..+-.+|++...+|++++|..++.+.+..
T Consensus       127 lyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~-~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~  194 (214)
T PF09986_consen  127 LYRDLGDEENEKRFLRKALEFYEEAYENEDFPIE-GMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGS  194 (214)
T ss_pred             HhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCC-CchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence            3344455555566666777777666665543222 3344556677899999999999999998866544

>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=80.56  E-value=0.6  Score=42.18  Aligned_cols=41  Identities=22%  Similarity=0.764  Sum_probs=29.1

Q ss_pred             cccccccccccCCCe----ecccCCcchHHhHhcCCC-------CCCCCcccc
Q 020453           24 LSCMICQALLFECSK----CTPCSHVYCKACISRFKD-------CPLCGADIE   65 (326)
Q Consensus        24 l~C~iC~~~l~~~p~----~l~C~h~fC~~Cl~~~~~-------CP~Cr~~~~   65 (326)
                      ..|.||.+. +..-.    +=.|||+|=..|+..|+.       ||.|+....
T Consensus         5 A~C~Ic~d~-~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik~~   56 (465)
T KOG0827|consen    5 AECHICIDG-RPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIKLQ   56 (465)
T ss_pred             ceeeEeccC-CccccccccccchhhHHHHHHHHHHHccCCccCCCCceeeccc
Confidence            469999666 33211    123999999999999963       999994444

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=80.53  E-value=11  Score=38.21  Aligned_cols=112  Identities=13%  Similarity=0.097  Sum_probs=61.4

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHH--HHHHHhhcC--------CCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 020453          214 NKIGDLKYYGGDLQAARSYYVRSLN--VRRDAVKRH--------SNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQE  283 (326)
Q Consensus       214 ~~l~~l~~~~~~~~~a~~~~~~sl~--~~~~~~~~~--------~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~  283 (326)
                      .+.+.+...+|-+++|+..|++.-.  +..++.+..        .+...-...+..++-+.+.-++..++.+.|+++|++
T Consensus       804 akvAvLAieLgMlEeA~~lYr~ckR~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK  883 (1416)
T KOG3617|consen  804 AKVAVLAIELGMLEEALILYRQCKRYDLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYYEK  883 (1416)
T ss_pred             hHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHHHh
Confidence            4555666667777788887776532  222222211        011111224566777788888889999999999998


Q ss_pred             HH----HHHHHhhcCCCc-hhHHhhccchhhhHH-------HHhHHhcCccccc
Q 020453          284 AI----KRLESLTLKPEE-AGLEQRCWNSSTTNF-------QKNHLNQLPKFRS  325 (326)
Q Consensus       284 ~~----~~~~~l~~~p~~-~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~  325 (326)
                      +-    ++.+-|..+|.. ....++--+-++|.+       .|+|..++.+|..
T Consensus       884 ~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~  937 (1416)
T KOG3617|consen  884 AGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSS  937 (1416)
T ss_pred             cCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHH
Confidence            74    334444333332 223333333344444       4455555555544

>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins

Probab=80.40  E-value=0.83  Score=28.68  Aligned_cols=36  Identities=25%  Similarity=0.692  Sum_probs=26.1

Q ss_pred             ccccccc--cccCCCeecccC-----CcchHHhHhcCC------CCCCCC
Q 020453           25 SCMICQA--LLFECSKCTPCS-----HVYCKACISRFK------DCPLCG   61 (326)
Q Consensus        25 ~C~iC~~--~l~~~p~~l~C~-----h~fC~~Cl~~~~------~CP~Cr   61 (326)
                      .|.||++  . ..+|...||.     |.+=..|+.+|.      .||.|+
T Consensus         1 ~CrIC~~~~~-~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~   49 (49)
T smart00744        1 ICRICHDEGD-EGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK   49 (49)
T ss_pred             CccCCCCCCC-CCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence            4889997  2 3458889984     445578999885      398884

Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class

>TIGR00540 hemY_coli hemY protein

Probab=80.31  E-value=7.7  Score=36.29  Aligned_cols=67  Identities=18%  Similarity=0.198  Sum_probs=48.6

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 020453          212 SLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL  291 (326)
Q Consensus       212 ~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l  291 (326)
                      ....+|-+....+++++|+.+|+++.....     .+.        ......++.++..+|+.++|.++|++++...-.+
T Consensus       337 ll~sLg~l~~~~~~~~~A~~~le~a~a~~~-----~p~--------~~~~~~La~ll~~~g~~~~A~~~~~~~l~~~~~~  403 (409)
T TIGR00540       337 INRALGQLLMKHGEFIEAADAFKNVAACKE-----QLD--------ANDLAMAADAFDQAGDKAEAAAMRQDSLGLMLAI  403 (409)
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHHhHHhhc-----CCC--------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc
Confidence            344678888888999999999995322211     222        1123478999999999999999999998877555

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	326
2h0d_A	97	Structure Of A Bmi-1-Ring1b Polycomb Group Ubiquiti		3e-06
2ckl_A	108	Ring1b-Bmi1 E3 Catalytic Domain Structure Length =		3e-06
3rpg_B	117	Bmi1RING1B-Ubch5c Complex Structure Length = 117		1e-05

>pdb|2H0D|A Chain A, Structure Of A Bmi-1-Ring1b Polycomb Group Ubiquitin Ligase Complex Length = 97

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 10/70 (14%)
Query: 24 LSCMICQALLFECSKCTPCSHVYCKACISRF----KDCPLCGADIEK------IEADTTL 73
          L C++C     + +    C H +CK CI R+    K CP+C   + K      I +D TL
Sbjct: 12 LMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKTRPLLNIRSDKTL 71
Query: 74 QDVVDRFIEG 83
          QD+V + + G
Sbjct: 72 QDIVYKLVPG 81

>pdb|2CKL|A Chain A, Ring1b-Bmi1 E3 Catalytic Domain Structure Length = 108

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 10/70 (14%)
Query: 24 LSCMICQALLFECSKCTPCSHVYCKACISRF----KDCPLCGADIEK------IEADTTL 73
          L C++C     + +    C H +CK CI R+    K CP+C   + K      I +D TL
Sbjct: 16 LMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKTRPLLNIRSDKTL 75
Query: 74 QDVVDRFIEG 83
          QD+V + + G
Sbjct: 76 QDIVYKLVPG 85

>pdb|3RPG|B Chain B, Bmi1RING1B-Ubch5c Complex Structure Length = 117

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 10/70 (14%)
Query: 24 LSCMICQALLFECSKCTPCSHVYCKACISRF----KDCPLCGADIEK------IEADTTL 73
          L C++C     + +    C H +CK CI R+    K CP+C   + K      I +D TL
Sbjct: 16 LMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKTRPLLNIRSDKTL 75
Query: 74 QDVVDRFIEG 83
          QD+V + + G
Sbjct: 76 QDIVYKLVPG 85

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	326
2ckl_A	108	Polycomb group ring finger protein 4; BMI1, RING1B	1e-13
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-06
2y43_A	99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	6e-10
2djb_A	72	Polycomb group ring finger protein 6; PCGF6, ring	2e-09
4epo_C	149	E3 ubiquitin-protein ligase RNF8; coiled-coil, E3	2e-09
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	2e-09
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	3e-05
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	5e-09
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	4e-06
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	6e-06
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	1e-04
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	8e-04
1jm7_B	117	BARD1, BRCA1-associated ring domain protein 1; rin	9e-09
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	1e-08
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	1e-07
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	3e-06
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	5e-06
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	8e-06
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	5e-05
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	7e-04
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	1e-08
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	7e-07
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	1e-05
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	2e-05
2ckl_B	165	Ubiquitin ligase protein RING2; BMI1, RING1B, poly	2e-08
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	4e-08
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	5e-08
1z6u_A	150	NP95-like ring finger protein isoform B; structura	1e-07
3fl2_A	124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	2e-07
2csy_A	81	Zinc finger protein 183-like 1; ring finger protei	3e-07
1chc_A	68	Equine herpes virus-1 ring domain; viral protein;	3e-07
3l11_A	115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	4e-07
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	4e-07
1bor_A	56	Transcription factor PML; proto-oncogene, nuclear	6e-07
2ct0_A	74	Non-SMC element 1 homolog; ring domain, structural	2e-06
3ztg_A	92	E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR	6e-06
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	8e-06
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	3e-05
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	8e-06
2y1n_A	389	E3 ubiquitin-protein ligase; ligase-transferase co	9e-06
3ng2_A	71	RNF4, snurf, ring finger protein 4; ring domain, E	1e-05
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	1e-05
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	2e-05
3hct_A	118	TNF receptor-associated factor 6; cross-brace, bet	3e-05
2xeu_A	64	Ring finger protein 4; transcription, zinc-finger,	3e-05
2yur_A	74	Retinoblastoma-binding protein 6; P53-associated c	3e-05
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	4e-05
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	2e-04
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	2e-04
2ea6_A	69	Ring finger protein 4; RNF4, RES4-26, ring domain,	4e-05
1jm7_A	112	BRCA1, breast cancer type 1 susceptibility protein	6e-05
3knv_A	141	TNF receptor-associated factor 2; cross-brace, alt	6e-05
3nw0_A	238	Non-structural maintenance of chromosomes element	9e-05
2ysj_A	63	Tripartite motif-containing protein 31; ring-type	1e-04
1rmd_A	116	RAG1; V(D)J recombination, antibody, MAD, ring fin	1e-04
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	2e-04
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	9e-04
2ecn_A	70	Ring finger protein 141; RNF141, ring domain, zinc	2e-04
2ecw_A	85	Tripartite motif-containing protein 30; metal bind	2e-04
2ecj_A	58	Tripartite motif-containing protein 39; TRIM39, ri	2e-04
2ysl_A	73	Tripartite motif-containing protein 31; ring-type	3e-04
3vk6_A	101	E3 ubiquitin-protein ligase hakai; HYB, phosphotyr	4e-04
2ecv_A	85	Tripartite motif-containing protein 5; metal bindi	5e-04
2egp_A	79	Tripartite motif-containing protein 34; ZF-C3HC4 d	7e-04
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	8e-04

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A Length = 108

 Score = 65.6 bits (160), Expect = 1e-13
 Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 10/70 (14%)

Query: 24 LSCMICQALLFECSKCTPCSHVYCKACISRF----KDCPLCGADI------EKIEADTTL 73
          L C++C     + +    C H +CK CI R+    K CP+C   +        I +D TL
Sbjct: 16 LMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKTRPLLNIRSDKTL 75

Query: 74 QDVVDRFIEG 83
          QD+V + + G
Sbjct: 76 QDIVYKLVPG 85

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 62.6 bits (151), Expect = 6e-11
 Identities = 50/364 (13%), Positives = 103/364 (28%), Gaps = 110/364 (30%)

Query: 63  DIEKIEADTTLQDVVDRFIEGHARIKRSHTNSDKEEDEAG-----ENKKVIYEDVSMERG 117
           D E  E     +D++  F +       +    D ++         E   +I    ++   
Sbjct: 8   DFETGEHQYQYKDILSVFED---AFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGT 64

Query: 118 AFL-----------VQQAMRAFRAQNVESAKSRL-------SLCTEDIRDQIERMGNTS- 158
             L           VQ+ +      N +   S +       S+ T    +Q +R+ N + 
Sbjct: 65  LRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQ 124

Query: 159 ---------------------ELCSQLGAVL-GMLG--------DCCRAMGDADAAVAYF 188
                                EL      ++ G+LG        D C     +       
Sbjct: 125 VFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCL----SYKVQCKM 180

Query: 189 ADSVEFLMKL-----PMDDLEIIHTLSVSLNK---------------IGDLKYYGGDLQA 228
              + F + L     P   LE++  L   ++                I  ++     L  
Sbjct: 181 DFKI-FWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLK 239

Query: 229 ARSYYVRSL----NVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEA 284
           ++  Y   L    NV+        N+  ++L +     +V D   +     +++D     
Sbjct: 240 SKP-YENCLLVLLNVQNAKAWNAFNLSCKIL-LTTRFKQVTDFLSAATTTHISLDHHSMT 297

Query: 285 IKRLESLTL--K---------PEEA-----------GLEQRCWNSSTTNFQKNHLNQLPK 322
           +   E  +L  K         P E                R   ++  N++  + ++L  
Sbjct: 298 LTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTT 357

Query: 323 FRSA 326
              +
Sbjct: 358 IIES 361

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.8 bits (110), Expect = 7e-06
 Identities = 31/269 (11%), Positives = 69/269 (25%), Gaps = 70/269 (26%)

Query: 73  LQDV-----VDRFIEGHARIKRSHTNSDKEEDEAGENKKVIYEDVSMERGAFLVQQAMRA 127
           L +V      + F     +I    T   K+  +        +  +          +    
Sbjct: 250 LLNVQNAKAWNAF-NLSCKILL--TTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL 306

Query: 128 FRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAY 187
              + ++     L                  E+ +     L ++ +  R           
Sbjct: 307 L-LKYLDCRPQDLP----------------REVLTTNPRRLSIIAESIRDG--------- 340

Query: 188 FADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRH 247
              + +    +  D L     +  SLN +   +Y        R  +   L+V   +    
Sbjct: 341 -LATWDNWKHVNCDKLT--TIIESSLNVLEPAEY--------RKMF-DRLSVFPPSA--- 385

Query: 248 SNVPSQVL-------------DVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLK 294
            ++P+ +L              V   L K + V++      +++         LE     
Sbjct: 386 -HIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIY-----LELKVKL 439

Query: 295 PEEAGLEQRCWNS--STTNFQKNHLNQLP 321
             E  L +   +       F  + L    
Sbjct: 440 ENEYALHRSIVDHYNIPKTFDSDDLIPPY 468

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens} Length = 99

 Score = 54.8 bits (132), Expect = 6e-10
 Identities = 17/63 (26%), Positives = 25/63 (39%), Gaps = 6/63 (9%)

Query: 24 LSCMICQALLFECSKCTPCSHVYCKACISRF----KDCPLCGADIEK--IEADTTLQDVV 77
          L C IC            CSH YC  CI +F      CP C   + +  ++ +  L ++V
Sbjct: 23 LRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTEPDLKNNRILDELV 82

Query: 78 DRF 80
             
Sbjct: 83 KSL 85

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 72

 Score = 52.8 bits (127), Expect = 2e-09
 Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 4/47 (8%)

Query: 24 LSCMICQALLFECSKCTPCSHVYCKACISRF----KDCPLCGADIEK 66
          + C IC+  L + +  T C H +CK+CI R       CP C   + +
Sbjct: 16 ILCSICKGYLIDATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQ 62

>4epo_C E3 ubiquitin-protein ligase RNF8; coiled-coil, E3 ubiquitin ligase, protein binding complex; 4.80A {Homo sapiens} Length = 149

 Score = 54.7 bits (131), Expect = 2e-09
 Identities = 18/82 (21%), Positives = 33/82 (40%), Gaps = 5/82 (6%)

Query: 24  LSCMICQALLFECSKCTPCSHVYCKACISRFKD----CPLCGADIEKIEADTTLQDVVDR 79
           L C+IC     E      C+H +C  CI+ +      CP+C  DI+       L + +++
Sbjct: 65  LQCIICSEYFIEAV-TLNCAHSFCSYCINEWMKRKIECPICRKDIKSKTYSLVLDNCINK 123

Query: 80  FIEGHARIKRSHTNSDKEEDEA 101
            +   +   +        E +A
Sbjct: 124 MVNNLSSEVKERRIVLIRERKA 145

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203

 Score = 55.4 bits (134), Expect = 2e-09
 Identities = 24/134 (17%), Positives = 47/134 (35%), Gaps = 12/134 (8%)

Query: 165 GAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGG 224
                MLG     M   D A A F    +   K    D    H    +L+++G ++   G
Sbjct: 26  SGARFMLGYVYAFMDRFDEARASFQALQQQAQKS--GDHTAEHR---ALHQVGMVERMAG 80

Query: 225 DLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEA 284
           +  AAR  ++    +     +         L  + +  +VA V    G+   A   ++++
Sbjct: 81  NWDAARRCFLEERELLASLPEDP-------LAASANAYEVATVALHFGDLAGARQEYEKS 133

Query: 285 IKRLESLTLKPEEA 298
           +   +    +   A
Sbjct: 134 LVYAQQADDQVAIA 147

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203

 Score = 43.0 bits (102), Expect = 3e-05
 Identities = 17/122 (13%), Positives = 42/122 (34%), Gaps = 20/122 (16%)

Query: 159 ELCSQLG-------AVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSV 211
           EL + L        A    +       GD   A   +  S+ +  +   DD      ++ 
Sbjct: 94  ELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQA--DDQ---VAIAC 148

Query: 212 SLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSI 271
           +   +GDL     +L  A+ +++R+ ++  +              V   + ++  ++   
Sbjct: 149 AFRGLGDLAQQEKNLLEAQQHWLRARDIFAELEDSE--------AVNELMTRLNGLEHHH 200

Query: 272 GN 273
            +
Sbjct: 201 HH 202

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 55.8 bits (135), Expect = 5e-09
 Identities = 28/131 (21%), Positives = 51/131 (38%), Gaps = 15/131 (11%)

Query: 168 LGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQ 227
           L + G+     GD  A V++F  +      + +   E + TLS   +++G+  +Y  D  
Sbjct: 12  LALEGERLCKSGDCRAGVSFFEAA------VQVGT-EDLKTLSAIYSQLGNAYFYLHDYA 64

Query: 228 AARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR 287
            A  Y+   L + R    +           A +   + +  + +GN D A+   Q  +  
Sbjct: 65  KALEYHHHDLTLARTIGDQL--------GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDI 116

Query: 288 LESLTLKPEEA 298
              L  K  EA
Sbjct: 117 SRELNDKVGEA 127

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 46.9 bits (112), Expect = 4e-06
 Identities = 19/134 (14%), Positives = 49/134 (36%), Gaps = 13/134 (9%)

Query: 165 GAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGG 224
                 LG+    +G+ + A  Y+  ++   +   + D       + S   +G+      
Sbjct: 227 RRAYSNLGNAYIFLGEFETASEYYKKTLL--LARQLKDR---AVEAQSCYSLGNTYTLLQ 281

Query: 225 DLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEA 284
           D + A  Y+++ L + ++   R             +   + +   ++GN D A+   ++ 
Sbjct: 282 DYEKAIDYHLKHLAIAQELNDRI--------GEGRACWSLGNAYTALGNHDQAMHFAEKH 333

Query: 285 IKRLESLTLKPEEA 298
           ++    +  K  E 
Sbjct: 334 LEISREVGDKSGEL 347

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 46.5 bits (111), Expect = 6e-06
 Identities = 21/136 (15%), Positives = 41/136 (30%), Gaps = 14/136 (10%)

Query: 163 QLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYY 222
            L A+   LG+    + D   A+ Y    +     +  D L      + +   +G+    
Sbjct: 45  TLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIG-DQLGE----AKASGNLGNTLKV 99

Query: 223 GGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQ 282
            G+   A     R L++ R+   +           A +L  + +V  + G          
Sbjct: 100 LGNFDEAIVCCQRHLDISRELNDKV--------GEARALYNLGNVYHAKGKSFGCPGPQD 151

Query: 283 EAIKRLESLTLKPEEA 298
                 E      + A
Sbjct: 152 VGEFPEEVRD-ALQAA 166

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 42.3 bits (100), Expect = 1e-04
 Identities = 17/149 (11%), Positives = 44/149 (29%), Gaps = 23/149 (15%)

Query: 165 GAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDD---------LEIIHTL------ 209
              L  LG+   A G +                              L ++  L      
Sbjct: 127 ARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQ 186

Query: 210 SVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDR 269
             +   +G+  Y  G+ + A   + + L + ++   +             + + + +   
Sbjct: 187 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKA--------AERRAYSNLGNAYI 238

Query: 270 SIGNEDVAVDGFQEAIKRLESLTLKPEEA 298
            +G  + A + +++ +     L  +  EA
Sbjct: 239 FLGEFETASEYYKKTLLLARQLKDRAVEA 267

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 40.0 bits (94), Expect = 8e-04
 Identities = 11/88 (12%), Positives = 34/88 (38%), Gaps = 10/88 (11%)

Query: 211 VSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRS 270
           + L   G+     GD +A  S++  ++ V  + +K           ++   +++ +    
Sbjct: 10  LELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLK----------TLSAIYSQLGNAYFY 59

Query: 271 IGNEDVAVDGFQEAIKRLESLTLKPEEA 298
           + +   A++     +    ++  +  EA
Sbjct: 60  LHDYAKALEYHHHDLTLARTIGDQLGEA 87

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 55.0 bits (133), Expect = 1e-08
 Identities = 28/131 (21%), Positives = 50/131 (38%), Gaps = 15/131 (11%)

Query: 168 LGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQ 227
           L + G+     GD  A VA+F  +++       +DL    TLS   +++G+  +Y GD  
Sbjct: 51  LALEGERLCNAGDCRAGVAFFQAAIQ--AGT--EDL---RTLSAIYSQLGNAYFYLGDYN 103

Query: 228 AARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR 287
            A  Y+   L + +    R           A S   + +  + +G  D A    +  +  
Sbjct: 104 KAMQYHKHDLTLAKSMNDRL--------GEAKSSGNLGNTLKVMGRFDEAAICCERHLTL 155

Query: 288 LESLTLKPEEA 298
              L  +  E 
Sbjct: 156 ARQLGDRLSEG 166

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 51.9 bits (125), Expect = 1e-07
 Identities = 22/134 (16%), Positives = 49/134 (36%), Gaps = 13/134 (9%)

Query: 165 GAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGG 224
           G   G LG+    +GD  AA+ +  + +   +     D         + + +G+   + G
Sbjct: 223 GRACGNLGNTYYLLGDFQAAIEHHQERLR--IAREFGDR---AAERRANSNLGNSHIFLG 277

Query: 225 DLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEA 284
             + A  +Y R+L +  +  +R           A S   + +    +   + A++     
Sbjct: 278 QFEDAAEHYKRTLALAVELGERE--------VEAQSCYSLGNTYTLLHEFNTAIEYHNRH 329

Query: 285 IKRLESLTLKPEEA 298
           +   + L  +  EA
Sbjct: 330 LAIAQELGDRIGEA 343

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 47.3 bits (113), Expect = 3e-06
 Identities = 14/116 (12%), Positives = 44/116 (37%), Gaps = 13/116 (11%)

Query: 171 LGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAAR 230
           LG+    +G  + A  ++  ++   + + + +       + S   +G+      +   A 
Sbjct: 269 LGNSHIFLGQFEDAAEHYKRTLA--LAVELGER---EVEAQSCYSLGNTYTLLHEFNTAI 323

Query: 231 SYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIK 286
            Y+ R L + ++ +             A +   + +   +IG  + A+   ++ ++
Sbjct: 324 EYHNRHLAIAQE-LGDRI-------GEARACWSLGNAHSAIGGHERALKYAEQHLQ 371

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 46.9 bits (112), Expect = 5e-06
 Identities = 26/166 (15%), Positives = 50/166 (30%), Gaps = 38/166 (22%)

Query: 140 LSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLP 199
           +   TED+R                 A+   LG+    +GD + A+ Y    +   +   
Sbjct: 75  IQAGTEDLRTL--------------SAIYSQLGNAYFYLGDYNKAMQYHKHDLT--LAKS 118

Query: 200 MDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAV 259
           M+D       + S   +G+     G    A     R L + R  +               
Sbjct: 119 MNDRLGE---AKSSGNLGNTLKVMGRFDEAAICCERHLTLAR-QLGDRL-------SEGR 167

Query: 260 SLAKVADVDRSIGNEDVAVD----------GFQEAIKRLE-SLTLK 294
           +L  + +V  + G      +              A++  + +L L 
Sbjct: 168 ALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLM 213

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 46.1 bits (110), Expect = 8e-06
 Identities = 12/122 (9%), Positives = 41/122 (33%), Gaps = 15/122 (12%)

Query: 177 AMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRS 236
            +G           + +       D    +      L   G+     GD +A  +++  +
Sbjct: 20  GLGSGGGGTNSHDGNSQ--QGSGSDGGSSMCL---ELALEGERLCNAGDCRAGVAFFQAA 74

Query: 237 LNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPE 296
           +    + ++           ++   +++ +    +G+ + A+   +  +   +S+  +  
Sbjct: 75  IQAGTEDLR----------TLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLG 124

Query: 297 EA 298
           EA
Sbjct: 125 EA 126

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 43.4 bits (103), Expect = 5e-05
 Identities = 24/146 (16%), Positives = 50/146 (34%), Gaps = 20/146 (13%)

Query: 165 GAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLP------MDDLEIIHTL------SVS 212
           G  L  LG+   A G             +    L        ++L+++  L        +
Sbjct: 166 GRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRA 225

Query: 213 LNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIG 272
              +G+  Y  GD QAA  ++   L + R+   R +           + + + +    +G
Sbjct: 226 CGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAA--------ERRANSNLGNSHIFLG 277

Query: 273 NEDVAVDGFQEAIKRLESLTLKPEEA 298
             + A + ++  +     L  +  EA
Sbjct: 278 QFEDAAEHYKRTLALAVELGEREVEA 303

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 40.0 bits (94), Expect = 7e-04
 Identities = 24/151 (15%), Positives = 48/151 (31%), Gaps = 30/151 (19%)

Query: 165 GAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDL----- 219
               G LG+  + MG  D A       +   +   + D     +   +L  +G++     
Sbjct: 126 AKSSGNLGNTLKVMGRFDEAAICCERHLT--LARQLGDR---LSEGRALYNLGNVYHAKG 180

Query: 220 KYYG------------GDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADV 267
           K+ G              L  A  +Y  +L + RD   R             +   + + 
Sbjct: 181 KHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRG--------AQGRACGNLGNT 232

Query: 268 DRSIGNEDVAVDGFQEAIKRLESLTLKPEEA 298
              +G+   A++  QE ++       +  E 
Sbjct: 233 YYLLGDFQAAIEHHQERLRIAREFGDRAAER 263

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 54.6 bits (132), Expect = 1e-08
 Identities = 29/131 (22%), Positives = 51/131 (38%), Gaps = 15/131 (11%)

Query: 168 LGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQ 227
           L + G+     GD  A V++F  +V+          E + TLS   +++G+  +Y  D  
Sbjct: 8   LALEGERLCKSGDCRAGVSFFEAAVQV-------GTEDLKTLSAIYSQLGNAYFYLHDYA 60

Query: 228 AARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR 287
            A  Y+   L + R    +           A +   + +  + +GN D A+   Q  +  
Sbjct: 61  KALEYHHHDLTLARTIGDQL--------GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDI 112

Query: 288 LESLTLKPEEA 298
              L  K  EA
Sbjct: 113 SRELNDKVGEA 123

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 49.2 bits (118), Expect = 7e-07
 Identities = 22/134 (16%), Positives = 47/134 (35%), Gaps = 13/134 (9%)

Query: 165 GAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGG 224
           G   G LG+    +G+   AV      +   +     D         + + +G+   + G
Sbjct: 183 GRAFGNLGNTHYLLGNFRDAVIAHEQRLL--IAKEFGDK---AAERRAYSNLGNAYIFLG 237

Query: 225 DLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEA 284
           + + A  YY ++L + R    R           A S   + +    + + + A+D   + 
Sbjct: 238 EFETASEYYKKTLLLARQLKDRA--------VEAQSCYSLGNTYTLLQDYEKAIDYHLKH 289

Query: 285 IKRLESLTLKPEEA 298
           +   + L  +  E 
Sbjct: 290 LAIAQELKDRIGEG 303

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 45.7 bits (109), Expect = 1e-05
 Identities = 17/121 (14%), Positives = 48/121 (39%), Gaps = 13/121 (10%)

Query: 171 LGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAAR 230
           LG+    +G+ + A  Y+  ++   +   + D       + S   +G+      D + A 
Sbjct: 229 LGNAYIFLGEFETASEYYKKTLL--LARQLKDR---AVEAQSCYSLGNTYTLLQDYEKAI 283

Query: 231 SYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLES 290
            Y+++ L + ++ +K              +   + +   ++GN D A+   ++ ++    
Sbjct: 284 DYHLKHLAIAQE-LKDRI-------GEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335

Query: 291 L 291
           +
Sbjct: 336 V 336

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 44.9 bits (107), Expect = 2e-05
 Identities = 23/156 (14%), Positives = 50/156 (32%), Gaps = 33/156 (21%)

Query: 163 QLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYY 222
            L A+   LG+    + D   A+ Y    +   +   + D       + +   +G+    
Sbjct: 41  TLSAIYSQLGNAYFYLHDYAKALEYHHHDLT--LARTIGDQLGE---AKASGNLGNTLKV 95

Query: 223 GGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNE-------- 274
            G+   A     R L++ R+   +           A +L  + +V  + G          
Sbjct: 96  LGNFDEAIVCCQRHLDISRELNDKV--------GEARALYNLGNVYHAKGKSFGCPGPQD 147

Query: 275 ------------DVAVDGFQEAIKRLESLTLKPEEA 298
                         AVD ++E +  + +L  +  + 
Sbjct: 148 TGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQG 183

>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B Length = 165

 Score = 51.9 bits (124), Expect = 2e-08
 Identities = 15/74 (20%), Positives = 24/74 (32%), Gaps = 8/74 (10%)

Query: 24  LSCMICQALLFECSKCTPCSHVYCKACISRF-----KDCPLCGADI---EKIEADTTLQD 75
           L C IC  +L        C H +C  CI        K+CP C   +     +  D     
Sbjct: 55  LMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNFDA 114

Query: 76  VVDRFIEGHARIKR 89
           ++ +        + 
Sbjct: 115 LISKIYPSRDEYEA 128

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens} Length = 100

 Score = 49.5 bits (118), Expect = 4e-08
 Identities = 17/82 (20%), Positives = 30/82 (36%), Gaps = 11/82 (13%)

Query: 24  LSCMICQALLFECSKCTPCSHVYCKACISRF-----KDCPLCGADI--EKIEADTTLQDV 76
             C IC   L +   C  CS + C +CI R+       CP C A +   ++      ++V
Sbjct: 23  FRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELVNCRWAEEV 82

Query: 77  VDRFIEGHARIKRSHTNSDKEE 98
             +       ++       +E 
Sbjct: 83  TQQL----DTLQLCSLTKHEEN 100

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164

 Score = 50.6 bits (122), Expect = 5e-08
 Identities = 22/134 (16%), Positives = 48/134 (35%), Gaps = 13/134 (9%)

Query: 165 GAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGG 224
           G   G LG+    +G+   AV      +   +     D        ++ + +G+   + G
Sbjct: 9   GRAFGNLGNTHYLLGNFRDAVIAHEQRLL--IAKEFGDK---AAERIAYSNLGNAYIFLG 63

Query: 225 DLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEA 284
           + + A  YY ++L + R    R           A S   + +    + + + A+D   + 
Sbjct: 64  EFETASEYYKKTLLLARQLKDRA--------VEAQSCYSLGNTYTLLQDYEKAIDYHLKH 115

Query: 285 IKRLESLTLKPEEA 298
           +   + L  +  E 
Sbjct: 116 LAIAQELKDRIGEG 129

>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens} Length = 150

 Score = 49.2 bits (117), Expect = 1e-07
 Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 9/71 (12%)

Query: 24  LSCMICQALLFECSKCTPCSHVYCKACISRFKD-----CPLCGADIEK---IEADTTLQD 75
             C+ CQ L+++    T C H  CK C+ R        CP C  D+ +   +  +  LQ 
Sbjct: 79  FMCVCCQELVYQ-PVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQNYIMIPNEILQT 137

Query: 76  VVDRFIEGHAR 86
           ++D F  G+++
Sbjct: 138 LLDLFFPGYSK 148

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens} Length = 124

 Score = 48.4 bits (115), Expect = 2e-07
 Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 9/69 (13%)

Query: 24  LSCMICQALLFECSKCTPCSHVYCKACISRFKD-----CPLCGADIEK---IEADTTLQD 75
             C+ CQ L+F     T C H  CK C+ R        CP C  D+ +   ++ +  LQ 
Sbjct: 53  FQCICCQELVFR-PITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGRSYAMQVNQPLQT 111

Query: 76  VVDRFIEGH 84
           V+++   G+
Sbjct: 112 VLNQLFPGY 120

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81

 Score = 46.8 bits (111), Expect = 3e-07
 Identities = 13/57 (22%), Positives = 20/57 (35%), Gaps = 5/57 (8%)

Query: 15 DAQSFKIGPLSCMICQALLFECSKCTPCSHVYCKACISRF----KDCPLCGADIEKI 67
               +  P  C IC+   F+    T C H +C++C          C +C      I
Sbjct: 7  GGSEEEEIPFRCFICRQA-FQNPVVTKCRHYFCESCALEHFRATPRCYICDQPTGGI 62

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1 Length = 68

 Score = 45.9 bits (109), Expect = 3e-07
 Identities = 15/46 (32%), Positives = 20/46 (43%), Gaps = 4/46 (8%)

Query: 26 CMICQALLFECSKCTPCSHVYCKACIS----RFKDCPLCGADIEKI 67
          C IC       S   PC H +C  CI+    +   CPLC   +E +
Sbjct: 8  CPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVESV 53

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, chromosomal protein, DNA repair, metal-binding; 2.12A {Homo sapiens} Length = 115

 Score = 47.2 bits (112), Expect = 4e-07
 Identities = 18/94 (19%), Positives = 32/94 (34%), Gaps = 15/94 (15%)

Query: 24  LSCMICQALLFECSKCTPCSHVYCKACISRFKD-----CPLCGADIEKIEA--------- 69
             C IC  +L E     PC+H  CK C     +     CP C   +              
Sbjct: 16  CQCGICMEILVE-PVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSSWTRYHTRRNSLV 74

Query: 70  DTTLQDVVDRFIEGHARIKRSHTNSDKEEDEAGE 103
           +  L  ++ +      +++ S   S++  D+   
Sbjct: 75  NVELWTIIQKHYPRECKLRASGQESEEVADDYQP 108

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 71

 Score = 45.6 bits (108), Expect = 4e-07
 Identities = 13/45 (28%), Positives = 16/45 (35%), Gaps = 5/45 (11%)

Query: 24 LSCMICQALLFECSKCTPCSHVYCKACISRFKD----CPLCGADI 64
            C IC           PC HV+C  C+         C LC  +I
Sbjct: 16 PECAICLQTCVHPV-SLPCKHVFCYLCVKGASWLGKRCALCRQEI 59

>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 56

 Score = 45.0 bits (107), Expect = 6e-07
 Identities = 15/38 (39%), Positives = 18/38 (47%), Gaps = 2/38 (5%)

Query: 24 LSCMICQALLFECSKCTPCSHVYCKACISRFK-DCPLC 60
          L C  CQA   +C K  PC H  C  C+      CP+C
Sbjct: 7  LRCQQCQAE-AKCPKLLPCLHTLCSGCLEASGMQCPIC 43

>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 74

 Score = 43.8 bits (103), Expect = 2e-06
 Identities = 11/46 (23%), Positives = 17/46 (36%), Gaps = 6/46 (13%)

Query: 25 SCMICQALLFECSKCTPCSHVYCKACISRF------KDCPLCGADI 64
           C IC +LL +   C  C       C++++        CP C    
Sbjct: 17 ICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYW 62

>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens} Length = 92

 Score = 43.2 bits (102), Expect = 6e-06
 Identities = 18/75 (24%), Positives = 29/75 (38%), Gaps = 9/75 (12%)

Query: 24 LSCMICQALLFECSKCTPCSHVYCKACISRF------KDCPLCGA---DIEKIEADTTLQ 74
          L C+IC+ ++ +      C + YC  CI           CP C       + + A+  L+
Sbjct: 14 LLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALIANKFLR 73

Query: 75 DVVDRFIEGHARIKR 89
            V+ F       KR
Sbjct: 74 QAVNNFKNETGYTKR 88

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 46.0 bits (109), Expect = 8e-06
 Identities = 19/170 (11%), Positives = 50/170 (29%), Gaps = 14/170 (8%)

Query: 131 QNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLG--MLGDCCRAMGDADAAVAYF 188
           + +E  +         + D +  +       + L         G       +  +A+ +F
Sbjct: 67  EYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGLLEYYFNFFRGMYELDQREYLSAIKFF 126

Query: 189 ADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHS 248
             +   L+ +  D +E          K+ +  YY      +  Y  ++  + ++    + 
Sbjct: 127 KKAESKLIFVK-DRIEKAE----FFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNI 181

Query: 249 NVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEA 298
                   +    +  A     +   + A+  FQ+A    E+        
Sbjct: 182 R-------LLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMG 224

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 44.4 bits (105), Expect = 3e-05
 Identities = 15/130 (11%), Positives = 39/130 (30%), Gaps = 13/130 (10%)

Query: 162 SQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKY 221
            +L     +       +   + A+++F  +           L        +L  IG  K 
Sbjct: 181 IRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLM-----GRTLYNIGLCKN 235

Query: 222 YGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGF 281
                + A  Y+ R++ V  ++             +  +   +  +   +G  D A +  
Sbjct: 236 SQSQYEDAIPYFKRAIAVFEESNILP--------SLPQAYFLITQIHYKLGKIDKAHEYH 287

Query: 282 QEAIKRLESL 291
            + +   +  
Sbjct: 288 SKGMAYSQKA 297

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66

 Score = 42.1 bits (99), Expect = 8e-06
 Identities = 12/48 (25%), Positives = 19/48 (39%), Gaps = 6/48 (12%)

Query: 24 LSCMICQALLFECSKCTPCSHVYCKACISRF-----KDCPLCGADIEK 66
            C  C  +L    + T C H +C++C++         C  C   I K
Sbjct: 16 YKCEKCHLVLCSPKQ-TECGHRFCESCMAALLSSSSPKCTACQESIVK 62

>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A* Length = 389

 Score = 45.9 bits (108), Expect = 9e-06
 Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 6/50 (12%)

Query: 24  LSCMICQALLFECSKCTPCSHVYCKACI-----SRFKDCPLCGADIEKIE 68
             C IC     +  K  PC H+ C +C+     S  + CP C  +I+  E
Sbjct: 333 QLCKICAEN-DKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTE 381

>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus} Length = 71

 Score = 41.7 bits (98), Expect = 1e-05
 Identities = 16/55 (29%), Positives = 20/55 (36%), Gaps = 10/55 (18%)

Query: 22 GPLSCMICQALLFECSK------CTPCSHVYCKACISRF----KDCPLCGADIEK 66
          G +SC IC     E  +       T C HV+C  C+         CP C   I  
Sbjct: 9  GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 63

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 45.6 bits (108), Expect = 1e-05
 Identities = 20/129 (15%), Positives = 43/129 (33%), Gaps = 14/129 (10%)

Query: 163 QLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYY 222
           +    L ++          D A+ +   ++E  M +  D        ++SL  I +    
Sbjct: 180 RTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFI-----AISLLNIANSYDR 234

Query: 223 GGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQ 282
            GD Q A  ++ ++  V R+ V            +   L  ++      G    A    +
Sbjct: 235 SGDDQMAVEHFQKAAKVSREKVPDL---------LPKVLFGLSWTLCKAGQTQKAFQFIE 285

Query: 283 EAIKRLESL 291
           E +  + + 
Sbjct: 286 EGLDHITAR 294

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 45.2 bits (107), Expect = 2e-05
 Identities = 17/129 (13%), Positives = 44/129 (34%), Gaps = 12/129 (9%)

Query: 170 MLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAA 229
             G       +   A+ Y+ ++ + L  +  DD+E          K+ +  Y+      +
Sbjct: 106 FRGMYEFDQKEYVEAIGYYREAEKELPFVS-DDIEKAE----FHFKVAEAYYHMKQTHVS 160

Query: 230 RSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLE 289
             + +++L++ ++                 SL  +A       + D A+   + A++   
Sbjct: 161 MYHILQALDIYQNHPLYSIR-------TIQSLFVIAGNYDDFKHYDKALPHLEAALELAM 213

Query: 290 SLTLKPEEA 298
            +      A
Sbjct: 214 DIQNDRFIA 222

>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A Length = 118

 Score = 42.1 bits (99), Expect = 3e-05
 Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 6/42 (14%)

Query: 24 LSCMICQALLFECSKCTPCSHVYCKACISRF-----KDCPLC 60
            C IC   L E    TPC H +CKACI +        CP+ 
Sbjct: 19 YECPICLMALREA-VQTPCGHRFCKACIIKSIRDAGHKCPVD 59

>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens} Length = 64

 Score = 40.5 bits (95), Expect = 3e-05
 Identities = 15/55 (27%), Positives = 19/55 (34%), Gaps = 10/55 (18%)

Query: 22 GPLSCMICQALLFECSK------CTPCSHVYCKACI----SRFKDCPLCGADIEK 66
            +SC IC     E  +       T C HV+C  C+         CP C   I  
Sbjct: 2  AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 56

>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens} Length = 74

 Score = 40.5 bits (95), Expect = 3e-05
 Identities = 12/43 (27%), Positives = 18/43 (41%), Gaps = 6/43 (13%)

Query: 24 LSCMICQALLFECSKCTPCSHVYCKACISRF------KDCPLC 60
          L C+IC+ ++ +      C + YC  CI           CP C
Sbjct: 16 LLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTC 58

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score = 43.7 bits (104), Expect = 4e-05
 Identities = 16/123 (13%), Positives = 33/123 (26%), Gaps = 14/123 (11%)

Query: 168 LGMLGDCCRAMGDADAAVAYFADSVE-FLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDL 226
           L  L   C+  G  +    Y+  ++E +  KL  DD  +      + N +       G  
Sbjct: 156 LNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVA----KTKNNLASCYLKQGKF 211

Query: 227 QAARSYYVRSLNVRRDAV--KRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEA 284
           + A + Y   L    +               +         + +   G +       +  
Sbjct: 212 KQAETLYKEILTRAHEREFGSVDD-------ENKPIWMHAEEREECKGKQKDGTSFGEYG 264

Query: 285 IKR 287
              
Sbjct: 265 GWY 267

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score = 41.8 bits (99), Expect = 2e-04
 Identities = 24/123 (19%), Positives = 43/123 (34%), Gaps = 13/123 (10%)

Query: 171 LGDCCRAMGDADAAVAYFADSVE-FLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAA 229
           L    R       A     D++      L  D   +      +LN +  L    G  + A
Sbjct: 75  LALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAA----TLNNLAVLYGKRGKYKEA 130

Query: 230 RSYYVRSLNVRRDAV-KRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRL 288
                R+L +R   + K H        DVA  L  +A + ++ G  +     +Q A++  
Sbjct: 131 EPLCKRALEIREKVLGKDH-------PDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIY 183

Query: 289 ESL 291
           ++ 
Sbjct: 184 QTK 186

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score = 41.4 bits (98), Expect = 2e-04
 Identities = 23/121 (19%), Positives = 42/121 (34%), Gaps = 13/121 (10%)

Query: 168 LGMLGDCCRAMGDADAAVAYFADSVEFLMK-LPMDDLEIIHTLSVSLNKIGDLKYYGGDL 226
           L  L     + G  + AV     ++E L K    D  ++       LN +  +       
Sbjct: 30  LHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVA----TMLNILALVYRDQNKY 85

Query: 227 QAARSYYVRSLNVRRDAV-KRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAI 285
           + A +    +L +R   + K H         VA +L  +A +    G    A    + A+
Sbjct: 86  KDAANLLNDALAIREKTLGKDH-------PAVAATLNNLAVLYGKRGKYKEAEPLCKRAL 138

Query: 286 K 286
           +
Sbjct: 139 E 139

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 69

 Score = 40.3 bits (94), Expect = 4e-05
 Identities = 15/49 (30%), Positives = 19/49 (38%), Gaps = 10/49 (20%)

Query: 22 GPLSCMICQALLFECSK------CTPCSHVYCKACIS----RFKDCPLC 60
          G +SC IC     E  +       T C HV+C  C+         CP C
Sbjct: 14 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTC 62

>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 112

 Score = 40.9 bits (96), Expect = 6e-05
 Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 12/69 (17%)

Query: 24 LSCMICQALLFE-CSKCTPCSHVYCKACISRFKD-------CPLCGADIEK--IEADTTL 73
          L C IC  L+ E  S  T C H++CK C+ +  +       CPLC  DI K  ++  T  
Sbjct: 22 LECPICLELIKEPVS--TKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQESTRF 79

Query: 74 QDVVDRFIE 82
            +V+  ++
Sbjct: 80 SQLVEELLK 88

>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens} Length = 141

 Score = 41.6 bits (97), Expect = 6e-05
 Identities = 13/70 (18%), Positives = 21/70 (30%), Gaps = 9/70 (12%)

Query: 13 GYDAQSFKIGP---LSCMICQALLFECSKCTPCSHVYCKACISRFKD-----CPLCGADI 64
          G+              C  C+ +L        C H YC  C++         C  C  + 
Sbjct: 18 GFSKTLLGTKLEAKYLCSACRNVLRRP-FQAQCGHRYCSFCLASILSSGPQNCAACVHEG 76

Query: 65 EKIEADTTLQ 74
             E  + L+
Sbjct: 77 IYEEGISILE 86

>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens} Length = 238

 Score = 42.4 bits (99), Expect = 9e-05
 Identities = 12/58 (20%), Positives = 21/58 (36%), Gaps = 6/58 (10%)

Query: 14  YDAQSFKIGPLSCMICQALLFECSKCTPCSHVYCKACISRF------KDCPLCGADIE 65
           Y  +++      C IC +LL +   C  C       C++++        CP C     
Sbjct: 171 YIRETYPDAVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 228

>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 63

 Score = 38.5 bits (90), Expect = 1e-04
 Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 8/44 (18%)

Query: 24 LSCMICQALLFECSKCTPCSHVYCKACISRFKD-------CPLC 60
          + C IC  +L +      C H +C  CI++  +       CPLC
Sbjct: 21 VICPICLDILQK-PVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63

>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1 Length = 116

 Score = 39.9 bits (93), Expect = 1e-04
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 24 LSCMICQALLFECSKCTPCSHVYCKACISRF-----KDCPLC 60
          +SC IC+ +L +    T C H++C+ CI R        CP C
Sbjct: 24 ISCQICEHILADP-VETSCKHLFCRICILRCLKVMGSYCPSC 64

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283

 Score = 41.7 bits (99), Expect = 2e-04
 Identities = 24/121 (19%), Positives = 43/121 (35%), Gaps = 13/121 (10%)

Query: 168 LGMLGDCCRAMGDADAAVAYFADSVE-FLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDL 226
           L +L    R       A     D++      L  D   +      +LN +  L    G  
Sbjct: 46  LNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAA----TLNNLAVLYGKRGKY 101

Query: 227 QAARSYYVRSLNVRRDAV-KRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAI 285
           + A     R+L +R   + K H        DVA  L  +A + ++ G  +     ++ A+
Sbjct: 102 KEAEPLCKRALEIREKVLGKFH-------PDVAKQLNNLALLCQNQGKAEEVEYYYRRAL 154

Query: 286 K 286
           +
Sbjct: 155 E 155

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283

 Score = 39.4 bits (93), Expect = 9e-04
 Identities = 11/118 (9%), Positives = 28/118 (23%), Gaps = 14/118 (11%)

Query: 171 LGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIH--TLSVSLNKIGDLKYYGGDLQA 228
           L  C    G    A   + + +    +    +   ++            + +      + 
Sbjct: 175 LASCYLKQGKYQDAETLYKEILTRAHE---KEFGSVNGDNKP-IWMHAEEREESKDKRRD 230

Query: 229 ARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIK 286
           +  Y       +                V  +L  +  + R  G  + A      A +
Sbjct: 231 SAPYGEYGSWYKA-CKVDS-------PTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280

>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70

 Score = 38.1 bits (89), Expect = 2e-04
 Identities = 13/45 (28%), Positives = 20/45 (44%), Gaps = 6/45 (13%)

Query: 26 CMICQALLFECSKCTPCSHVYCKACIS----RFKDCPLCGADIEK 66
          C IC           PC+H +C+ CI     R ++CP+C   +  
Sbjct: 18 CCICMD--GRADLILPCAHSFCQKCIDKWSDRHRNCPICRLQMTG 60

>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus} Length = 85

 Score = 38.5 bits (90), Expect = 2e-04
 Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 11/47 (23%)

Query: 24 LSCMICQALLFECSKCTPCSHVYCKACISRFKD----------CPLC 60
          ++C IC  LL E      C+H +C+ACI+   +          CP+C
Sbjct: 20 VTCPICLELLKE-PVSADCNHSFCRACITLNYESNRNTDGKGNCPVC 65

>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 58

 Score = 37.7 bits (88), Expect = 2e-04
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 8/44 (18%)

Query: 24 LSCMICQALLFECSKCTPCSHVYCKACISRFKD-------CPLC 60
           SC +C   L E      C H +CKACI+R+ +       CP+C
Sbjct: 16 ASCSVCLEYLKE-PVIIECGHNFCKACITRWWEDLERDFPCPVC 58

>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 73

 Score = 38.1 bits (89), Expect = 3e-04
 Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 8/44 (18%)

Query: 24 LSCMICQALLFECSKCTPCSHVYCKACISRFKD-------CPLC 60
          + C IC  +L +      C H +C  CI++  +       CPLC
Sbjct: 21 VICPICLDILQK-PVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63

>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus} Length = 101

 Score = 38.3 bits (88), Expect = 4e-04
 Identities = 14/48 (29%), Positives = 20/48 (41%), Gaps = 5/48 (10%)

Query: 26 CMICQALLFECSKCTPCSHVYCKACISRF-----KDCPLCGADIEKIE 68
          C  C   +    +  PC HV+C  C         K CP C   +++IE
Sbjct: 4  CDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQRIE 51

>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 85

 Score = 37.6 bits (88), Expect = 5e-04
 Identities = 13/47 (27%), Positives = 21/47 (44%), Gaps = 11/47 (23%)

Query: 24 LSCMICQALLFECSKCTPCSHVYCKACISRFKD----------CPLC 60
          ++C IC  LL +      C H +C+AC++              CP+C
Sbjct: 20 VTCPICLELLTQ-PLSLDCGHSFCQACLTANHKKSMLDKGESSCPVC 65

>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens} Length = 79

 Score = 36.9 bits (86), Expect = 7e-04
 Identities = 15/48 (31%), Positives = 20/48 (41%), Gaps = 12/48 (25%)

Query: 24 LSCMICQALLFECSKCTPCSHVYCKACISRFKD-----------CPLC 60
          ++C IC  LL E      C H  C+ACI+               CP+C
Sbjct: 13 VTCPICLELLTE-PLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVC 59

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens} Length = 170

 Score = 38.5 bits (89), Expect = 8e-04
 Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 6/48 (12%)

Query: 24 LSCMICQALLFECSKCTPCSHVYCKACISRFKD-----CPLCGADIEK 66
            C IC   L E    TPC H +CKACI +        CP+    + +
Sbjct: 19 YECPICLMALREA-VQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLE 65

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	326
3ztg_A	92	E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR	99.45
1wgm_A	98	Ubiquitin conjugation factor E4A; ubiquitinating e	99.42
1t1h_A	78	Gspef-atpub14, armadillo repeat containing protein	99.41
2kr4_A	85	Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ri	99.39
2kre_A	100	Ubiquitin conjugation factor E4 B; U-box domain, E	99.39
3fl2_A	124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	99.38
4ayc_A	138	E3 ubiquitin-protein ligase RNF8; DNA damage, K63	99.33
1jm7_B	117	BARD1, BRCA1-associated ring domain protein 1; rin	99.32
2y43_A	99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	99.29
2ckl_A	108	Polycomb group ring finger protein 4; BMI1, RING1B	99.27
2egp_A	79	Tripartite motif-containing protein 34; ZF-C3HC4 d	99.26
3l11_A	115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	99.26
1z6u_A	150	NP95-like ring finger protein isoform B; structura	99.25
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	99.25
2yu4_A	94	E3 SUMO-protein ligase NSE2; SP-ring domain, struc	99.25
1bor_A	56	Transcription factor PML; proto-oncogene, nuclear	99.19
2csy_A	81	Zinc finger protein 183-like 1; ring finger protei	99.19
2f42_A	179	STIP1 homology and U-box containing protein 1; cha	99.16
3hct_A	118	TNF receptor-associated factor 6; cross-brace, bet	99.16
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.13
2ysl_A	73	Tripartite motif-containing protein 31; ring-type	99.12
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	99.11
3knv_A	141	TNF receptor-associated factor 2; cross-brace, alt	99.11
1jm7_A	112	BRCA1, breast cancer type 1 susceptibility protein	99.1
2yur_A	74	Retinoblastoma-binding protein 6; P53-associated c	99.09
2ckl_B	165	Ubiquitin ligase protein RING2; BMI1, RING1B, poly	99.09
2djb_A	72	Polycomb group ring finger protein 6; PCGF6, ring	99.08
2ecw_A	85	Tripartite motif-containing protein 30; metal bind	99.07
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	99.07
2ecv_A	85	Tripartite motif-containing protein 5; metal bindi	99.07
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	99.06
4ic3_A	74	E3 ubiquitin-protein ligase XIAP; ring domain, zin	99.04
3htk_C	267	E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-	99.03
2ysj_A	63	Tripartite motif-containing protein 31; ring-type	99.01
2ct2_A	88	Tripartite motif protein 32; zinc-finger protein H	99.01
1g25_A	65	CDK-activating kinase assembly factor MAT1; ring f	99.0
1e4u_A	78	Transcriptional repressor NOT4; gene regulation, t	98.98
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	98.98
1rmd_A	116	RAG1; V(D)J recombination, antibody, MAD, ring fin	98.98
2ecj_A	58	Tripartite motif-containing protein 39; TRIM39, ri	98.96
2yho_A	79	E3 ubiquitin-protein ligase mylip; ligase, E2 liga	98.94
3ng2_A	71	RNF4, snurf, ring finger protein 4; ring domain, E	98.94
2ea6_A	69	Ring finger protein 4; RNF4, RES4-26, ring domain,	98.93
2ecg_A	75	Baculoviral IAP repeat-containing protein 4; BIRC4	98.92
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	98.9
1iym_A	55	EL5; ring-H2 finger, ubiquitin ligase, DNA binding	98.87
1x4j_A	75	Ring finger protein 38; structural genomics, NPPSF	98.86
2xeu_A	64	Ring finger protein 4; transcription, zinc-finger,	98.85
1chc_A	68	Equine herpes virus-1 ring domain; viral protein;	98.84
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	98.83
2ect_A	78	Ring finger protein 126; metal binding protein, st	98.82
2ecm_A	55	Ring finger and CHY zinc finger domain- containing	98.8
2ecn_A	70	Ring finger protein 141; RNF141, ring domain, zinc	98.8
2kiz_A	69	E3 ubiquitin-protein ligase arkadia; ring-H2 finge	98.79
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.78
2l0b_A	91	E3 ubiquitin-protein ligase praja-1; zinc finger,	98.77
2ea5_A	68	Cell growth regulator with ring finger domain prot	98.76
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	98.74
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	98.71
2ep4_A	74	Ring finger protein 24; zinc binding, ubiquitin, E	98.67
2ecl_A	81	Ring-box protein 2; RNF7, ring domian, zinc-bindin	98.65
1v87_A	114	Deltex protein 2; ring-H2 domain, zinc-binding dom	98.63
3t6p_A	345	Baculoviral IAP repeat-containing protein 2; ring,	98.61
1wim_A	94	KIAA0161 protein; ring finger domain, UBCM4-intera	98.58
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	98.56
2vje_A	64	E3 ubiquitin-protein ligase MDM2; proto-oncogene,	98.54
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	98.53
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	98.52
2vje_B	63	MDM4 protein; proto-oncogene, phosphorylation, alt	98.5
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	98.46
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	98.46
2y1n_A	389	E3 ubiquitin-protein ligase; ligase-transferase co	98.43
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.41
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.4
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.38
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	98.38
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	98.36
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.36
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.35
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	98.32
3dpl_R	106	Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST	98.28
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	98.27
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	98.26
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	98.26
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	98.2
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	98.19
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	98.19
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	98.17
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.16
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	98.14
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	98.13
2bay_A	61	PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin l	98.09
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	98.07
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	98.06
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	98.06
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	98.03
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	98.0
4g1t_A	472	Interferon-induced protein with tetratricopeptide	98.0
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	97.96
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	97.95
4a0k_B	117	E3 ubiquitin-protein ligase RBX1; ligase-DNA-bindi	97.94
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	97.92
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	97.92
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	97.9
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	97.88
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	97.84
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	97.8
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	97.8
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	97.74
2d8s_A	80	Cellular modulator of immune recognition; C-MIR, m	97.71
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	97.63
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	97.61
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	97.6
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	97.57
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	97.54
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	97.52
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	97.5
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	97.49
4g1t_A	472	Interferon-induced protein with tetratricopeptide	97.48
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	97.48
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	97.44
3vk6_A	101	E3 ubiquitin-protein ligase hakai; HYB, phosphotyr	97.43
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	97.43
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	97.38
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	97.37
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	97.35
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	97.32
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	97.31
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	97.29
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	97.26
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	97.24
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	97.2
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	97.2
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	97.18
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	97.16
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	97.11
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	97.11
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	97.1
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	97.09
2l6j_A	111	TPR repeat-containing protein associated with HSP;	97.08
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	97.08
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	97.07
2jun_A	101	Midline-1; B-BOX, TRIM, ring finger, alternative s	97.02
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	97.01
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	97.0
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	97.0
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	96.99
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	96.98
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	96.97
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	96.96
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	96.95
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	96.94
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	96.93
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	96.93
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	96.93
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	96.92
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	96.91
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	96.91
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	96.89
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	96.89
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	96.89
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	96.88
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	96.87
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	96.87
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	96.86
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	96.86
2ct0_A	74	Non-SMC element 1 homolog; ring domain, structural	96.86
3k9i_A	117	BH0479 protein; putative protein binding protein,	96.83
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	96.81
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	96.8
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	96.79
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	96.78
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	96.77
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	96.75
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	96.75
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	96.73
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	96.72
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	96.72
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	96.71
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	96.71
3u4t_A	272	TPR repeat-containing protein; structural genomics	96.69
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	96.69
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	96.69
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	96.67
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	96.67
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	96.67
3u4t_A	272	TPR repeat-containing protein; structural genomics	96.66
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	96.64
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	96.63
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	96.63
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	96.6
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	96.58
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	96.57
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	96.56
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	96.54
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	96.5
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	96.49
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	96.46
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	96.42
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	96.41
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	96.41
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	96.39
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	96.39
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	96.31
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	96.27
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	96.26
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	96.22
2gw1_A	514	Mitochondrial precursor proteins import receptor;	96.14
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	96.13
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	96.05
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	96.04
3k9i_A	117	BH0479 protein; putative protein binding protein,	96.04
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	96.03
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	96.02
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	95.97
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	95.88
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	95.79
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	95.79
2kat_A	115	Uncharacterized protein; NESG, structure, structur	95.78
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	95.62
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	95.61
2gw1_A	514	Mitochondrial precursor proteins import receptor;	95.54
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	95.53
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	95.53
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	95.46
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	95.44
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	95.43
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	95.35
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	95.33
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	95.3
3k1l_B	381	Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A	95.21
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	95.19
2csv_A	72	Tripartite motif protein 29; ZF-B_BOX domain, TRIM	94.92
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	94.91
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	94.82
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	94.66
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	94.63
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	94.59
2l6j_A	111	TPR repeat-containing protein associated with HSP;	94.43
1vyx_A	60	ORF K3, K3RING; zinc-binding protein, ring domain,	94.39
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	94.22
2kat_A	115	Uncharacterized protein; NESG, structure, structur	94.1
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	94.07
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	93.92
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	93.66
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	93.17
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	93.06
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	92.97
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	92.39
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	92.37
3m62_A	968	Ubiquitin conjugation factor E4; armadillo-like re	92.31
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	91.74
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	91.02
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	90.26
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	89.96
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	89.47
1klx_A	138	Cysteine rich protein B; structural genomics, heli	88.33
2jne_A	101	Hypothetical protein YFGJ; zinc fingers, two zinc,	88.21
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	88.12
2ffw_A	78	Midline-1; B-BOX, ring finger, zinc-finger, ligase	87.89
2d8u_A	64	Ubiquitin ligase TRIM63; tripartite motif-containi	87.41
2ko5_A	99	Ring finger protein Z; lassa fever virus-Z, negati	86.94
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	86.89
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	86.57
2yvr_A	50	Transcription intermediary factor 1-beta; ZF-B_BOX	86.45
1klx_A	138	Cysteine rich protein B; structural genomics, heli	85.08
2did_A	53	Tripartite motif protein 39; ZF-B-box domian, Zn b	83.3
2dja_A	84	Midline-2; tripartite motif protein 1, ZF-B_BOX, s	83.09
2w2u_A	83	Hypothetical P60 katanin; hydrolase transport comp	83.03
3i2d_A	371	E3 SUMO-protein ligase SIZ1; signal transduction,	82.72
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	82.43
2rpa_A	78	Katanin P60 ATPase-containing subunit A1; AAA ATPa	81.65
3nw0_A	238	Non-structural maintenance of chromosomes element	81.58
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	81.14
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	80.92
4fo9_A	360	E3 SUMO-protein ligase PIAS2; E3 ligase, pinit dom	80.16

>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}

Probab=99.45  E-value=5.7e-14  Score=101.93  Aligned_cols=62  Identities=27%  Similarity=0.666  Sum_probs=55.1

Q ss_pred             cCCcccccccccccCCCeecc-cCCcchHHhHhcCC------CCCCCCcccc---cccccHHHHHHHHHHHhc
Q 020453           21 IGPLSCMICQALLFECSKCTP-CSHVYCKACISRFK------DCPLCGADIE---KIEADTTLQDVVDRFIEG   83 (326)
Q Consensus        21 ~~~l~C~iC~~~l~~~p~~l~-C~h~fC~~Cl~~~~------~CP~Cr~~~~---~~~~n~~l~~~~~~~~~~   83 (326)
                      .+.++|+||+++ +.+|++++ |||+||..||..|+      .||.||..+.   .+.+|..+.++++.+...
T Consensus        11 ~~~~~C~IC~~~-~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~~~   82 (92)
T 3ztg_A           11 PDELLCLICKDI-MTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALIANKFLRQAVNNFKNE   82 (92)
T ss_dssp             CTTTEETTTTEE-CSSCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSCCTTSCEECHHHHHHHHHHHHH
T ss_pred             CcCCCCCCCChh-hcCceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCCCccccCcCHHHHHHHHHHHHH
Confidence            378999999999 57799999 99999999999885      4999999974   589999999999998764

>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2

Probab=99.42  E-value=3.5e-13  Score=98.44  Aligned_cols=62  Identities=18%  Similarity=0.238  Sum_probs=56.4

Q ss_pred             CCcccccccccccCCCeecccC-CcchHHhHhcCCC----CCCCCcccc--cccccHHHHHHHHHHHhcc
Q 020453           22 GPLSCMICQALLFECSKCTPCS-HVYCKACISRFKD----CPLCGADIE--KIEADTTLQDVVDRFIEGH   84 (326)
Q Consensus        22 ~~l~C~iC~~~l~~~p~~l~C~-h~fC~~Cl~~~~~----CP~Cr~~~~--~~~~n~~l~~~~~~~~~~~   84 (326)
                      ++|.||||+++ +.+||+++|| |+||+.||..||.    ||.|+..+.  .+.+|..|+++++.+....
T Consensus        21 ~~~~CpI~~~~-m~dPV~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~~~~   89 (98)
T 1wgm_A           21 DEFLDPIMSTL-MCDPVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQIRPNTELKEKIQRWLAER   89 (98)
T ss_dssp             TTTBCTTTCSB-CSSEEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTTTSEECHHHHHHHHHHHHHS
T ss_pred             HhcCCcCcccc-ccCCeECCCCCeEECHHHHHHHHHhCCCCCCCCCCCChhhceEcHHHHHHHHHHHHHc
Confidence            68999999999 5779999999 9999999999985    999999987  5889999999999987654

>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2

Probab=99.41  E-value=6e-14  Score=98.53  Aligned_cols=62  Identities=16%  Similarity=0.349  Sum_probs=54.9

Q ss_pred             cCCcccccccccccCCCeecccCCcchHHhHhcCCC-----CCCCCcccc--cccccHHHHHHHHHHHhc
Q 020453           21 IGPLSCMICQALLFECSKCTPCSHVYCKACISRFKD-----CPLCGADIE--KIEADTTLQDVVDRFIEG   83 (326)
Q Consensus        21 ~~~l~C~iC~~~l~~~p~~l~C~h~fC~~Cl~~~~~-----CP~Cr~~~~--~~~~n~~l~~~~~~~~~~   83 (326)
                      .+.+.||||+++ +.+|++++|||+||+.||..|+.     ||.||..+.  .+.+|..+.++++.+...
T Consensus         6 ~~~~~C~IC~~~-~~~Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~l~~n~~l~~~i~~~~~~   74 (78)
T 1t1h_A            6 PEYFRCPISLEL-MKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVLKSLIALWCES   74 (78)
T ss_dssp             SSSSSCTTTSCC-CSSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCEECTTTHHHHHHHHHH
T ss_pred             cccCCCCCcccc-ccCCEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChhhCccCHHHHHHHHHHHHH
Confidence            478999999999 57799999999999999998863     999999986  488899999999988764

>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}

Probab=99.39  E-value=1.2e-13  Score=98.39  Aligned_cols=61  Identities=13%  Similarity=0.160  Sum_probs=55.5

Q ss_pred             CCcccccccccccCCCeecccCCcchHHhHhcCCC----CCCCCcccc--cccccHHHHHHHHHHHhc
Q 020453           22 GPLSCMICQALLFECSKCTPCSHVYCKACISRFKD----CPLCGADIE--KIEADTTLQDVVDRFIEG   83 (326)
Q Consensus        22 ~~l~C~iC~~~l~~~p~~l~C~h~fC~~Cl~~~~~----CP~Cr~~~~--~~~~n~~l~~~~~~~~~~   83 (326)
                      ++|.||||+++ +.+|++++|||+||+.||..||.    ||.|+..+.  .+.+|..++++++.+...
T Consensus        13 ~~~~CpI~~~~-m~dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~l~pn~~L~~~i~~~~~~   79 (85)
T 2kr4_A           13 DEFRDPLMDTL-MTDPVRLPSGTVMDRSIILRHLLNSPTDPFNRQMLTESMLEPVPELKEQIQAWMRE   79 (85)
T ss_dssp             TTTBCTTTCSB-CSSEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHHHHHH
T ss_pred             hheECcccCch-hcCCeECCCCCEECHHHHHHHHhcCCCCCCCcCCCChHhcchHHHHHHHHHHHHHH
Confidence            68999999999 57799999999999999999973    999999887  588999999999998764

>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B

Probab=99.39  E-value=1.8e-13  Score=100.29  Aligned_cols=61  Identities=11%  Similarity=0.175  Sum_probs=56.0

Q ss_pred             CCcccccccccccCCCeecccCCcchHHhHhcCCC----CCCCCcccc--cccccHHHHHHHHHHHhc
Q 020453           22 GPLSCMICQALLFECSKCTPCSHVYCKACISRFKD----CPLCGADIE--KIEADTTLQDVVDRFIEG   83 (326)
Q Consensus        22 ~~l~C~iC~~~l~~~p~~l~C~h~fC~~Cl~~~~~----CP~Cr~~~~--~~~~n~~l~~~~~~~~~~   83 (326)
                      ++|.||||+++ +.+|++++|||+||+.||..||.    ||.|+..+.  .+.+|..++++++.+...
T Consensus        28 ~~~~CpI~~~~-m~dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~~~   94 (100)
T 2kre_A           28 DEFRDPLMDTL-MTDPVRLPSGTIMDRSIILRHLLNSPTDPFNRQTLTESMLEPVPELKEQIQAWMRE   94 (100)
T ss_dssp             TTTBCTTTCSB-CSSEEEETTTEEEEHHHHHHHTTSCSBCSSSCCBCCTTSSEECHHHHHHHHHHHHT
T ss_pred             HhhCCcCccCc-ccCCeECCCCCEEchHHHHHHHHcCCCCCCCCCCCChhhceECHHHHHHHHHHHHH
Confidence            68999999999 57799999999999999999985    999999987  589999999999998764

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}

Probab=99.38  E-value=1e-13  Score=106.45  Aligned_cols=62  Identities=31%  Similarity=0.712  Sum_probs=55.2

Q ss_pred             CCcccccccccccCCCeecccCCcchHHhHhcCC-----CCCCCCccccc---ccccHHHHHHHHHHHhcc
Q 020453           22 GPLSCMICQALLFECSKCTPCSHVYCKACISRFK-----DCPLCGADIEK---IEADTTLQDVVDRFIEGH   84 (326)
Q Consensus        22 ~~l~C~iC~~~l~~~p~~l~C~h~fC~~Cl~~~~-----~CP~Cr~~~~~---~~~n~~l~~~~~~~~~~~   84 (326)
                      +.++|+||++. +.+|++++|||+||..||..|+     .||.||..+..   +.+|..+.++++.+....
T Consensus        51 ~~~~C~IC~~~-~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~p~~  120 (124)
T 3fl2_A           51 ETFQCICCQEL-VFRPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGRSYAMQVNQPLQTVLNQLFPGY  120 (124)
T ss_dssp             HHTBCTTTSSB-CSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCCCHHHHHHHHHHSTTT
T ss_pred             cCCCCCcCChH-HcCcEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCCCCCCCCCHHHHHHHHHHcccc
Confidence            56899999999 5679999999999999999886     49999999974   889999999999987754

>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C

Probab=99.33  E-value=3.8e-13  Score=105.10  Aligned_cols=60  Identities=27%  Similarity=0.783  Sum_probs=50.9

Q ss_pred             CCcccccccccccCCCeecccCCcchHHhHhcCCC----CCCCCcccccccccHHHHHHHHHHHh
Q 020453           22 GPLSCMICQALLFECSKCTPCSHVYCKACISRFKD----CPLCGADIEKIEADTTLQDVVDRFIE   82 (326)
Q Consensus        22 ~~l~C~iC~~~l~~~p~~l~C~h~fC~~Cl~~~~~----CP~Cr~~~~~~~~n~~l~~~~~~~~~   82 (326)
                      ++++|+||++. +.+|++++|||+||..||..|+.    ||.||..+.....|..+.++++.+..
T Consensus        52 ~~~~C~iC~~~-~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~i~~~~~  115 (138)
T 4ayc_A           52 NELQCIICSEY-FIEAVTLNCAHSFCSYCINEWMKRKIECPICRKDIKSKTYSLVLDNCINKMVN  115 (138)
T ss_dssp             HHSBCTTTCSB-CSSEEEETTSCEEEHHHHHHHTTTCSBCTTTCCBCCCEEECHHHHHHHHHHHT
T ss_pred             ccCCCcccCcc-cCCceECCCCCCccHHHHHHHHHcCCcCCCCCCcCCCCCCccchhHHHHHHHH
Confidence            46789999999 56799999999999999999974    99999999876677777777776654

>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=99.32  E-value=9.8e-13  Score=99.77  Aligned_cols=62  Identities=21%  Similarity=0.604  Sum_probs=55.3

Q ss_pred             CCcccccccccccCCCeec-ccCCcchHHhHhcCCC--CCCCCcccc--cccccHHHHHHHHHHHhcc
Q 020453           22 GPLSCMICQALLFECSKCT-PCSHVYCKACISRFKD--CPLCGADIE--KIEADTTLQDVVDRFIEGH   84 (326)
Q Consensus        22 ~~l~C~iC~~~l~~~p~~l-~C~h~fC~~Cl~~~~~--CP~Cr~~~~--~~~~n~~l~~~~~~~~~~~   84 (326)
                      +.+.|+||+++ +.+|+++ +|||+||..||..|+.  ||.||..+.  .+.+|..+.++++.+....
T Consensus        21 ~~~~C~IC~~~-~~~pv~~~~CgH~fC~~Ci~~~~~~~CP~Cr~~~~~~~~~~n~~l~~l~~~~~~~~   87 (117)
T 1jm7_B           21 KLLRCSRCTNI-LREPVCLGGCEHIFCSNCVSDCIGTGCPVCYTPAWIQDLKINRQLDSMIQLCSKLR   87 (117)
T ss_dssp             HTTSCSSSCSC-CSSCBCCCSSSCCBCTTTGGGGTTTBCSSSCCBCSCSSCCCCHHHHHHHHHHHHHH
T ss_pred             hCCCCCCCChH-hhCccEeCCCCCHHHHHHHHHHhcCCCcCCCCcCccccccccHHHHHHHHHHHHHH
Confidence            68999999999 5779999 9999999999999975  999999986  5889999999999886643

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}

Probab=99.29  E-value=8.2e-13  Score=97.13  Aligned_cols=62  Identities=29%  Similarity=0.708  Sum_probs=54.7

Q ss_pred             CCcccccccccccCCCeec-ccCCcchHHhHhcCCC----CCCCCcccc--cccccHHHHHHHHHHHhcc
Q 020453           22 GPLSCMICQALLFECSKCT-PCSHVYCKACISRFKD----CPLCGADIE--KIEADTTLQDVVDRFIEGH   84 (326)
Q Consensus        22 ~~l~C~iC~~~l~~~p~~l-~C~h~fC~~Cl~~~~~----CP~Cr~~~~--~~~~n~~l~~~~~~~~~~~   84 (326)
                      +.+.|+||++. +.+|+++ +|||+||..||..|+.    ||.||..+.  .+.+|..+.++++.+....
T Consensus        21 ~~~~C~IC~~~-~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~~i~~~~~~~   89 (99)
T 2y43_A           21 DLLRCGICFEY-FNIAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTEPDLKNNRILDELVKSLNFAR   89 (99)
T ss_dssp             HHTBCTTTCSB-CSSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGGCEECHHHHHHHHHHHHHH
T ss_pred             CCCCcccCChh-hCCcCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCChhhCCcCHHHHHHHHHHHHHH
Confidence            57899999999 5679988 8999999999999863    999999988  4889999999999987653

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A

Probab=99.27  E-value=1.4e-12  Score=97.48  Aligned_cols=61  Identities=36%  Similarity=0.886  Sum_probs=53.5

Q ss_pred             CCcccccccccccCCCeec-ccCCcchHHhHhcCC----CCCCCCcccc------cccccHHHHHHHHHHHhc
Q 020453           22 GPLSCMICQALLFECSKCT-PCSHVYCKACISRFK----DCPLCGADIE------KIEADTTLQDVVDRFIEG   83 (326)
Q Consensus        22 ~~l~C~iC~~~l~~~p~~l-~C~h~fC~~Cl~~~~----~CP~Cr~~~~------~~~~n~~l~~~~~~~~~~   83 (326)
                      +.+.|+||++. +.+|+++ +|||+||..||..|+    .||.||..+.      .+..|..+.++++.+...
T Consensus        14 ~~~~C~IC~~~-~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~l~~n~~l~~~i~~~~~~   85 (108)
T 2ckl_A           14 PHLMCVLCGGY-FIDATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKTRPLLNIRSDKTLQDIVYKLVPG   85 (108)
T ss_dssp             GGTBCTTTSSB-CSSEEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCSSCGGGGEEECHHHHHHHHHHSTT
T ss_pred             CcCCCccCChH-HhCcCEeCCCCChhhHHHHHHHHHhCCcCcCCCccccccCcccccCcCHHHHHHHHHHhhh
Confidence            68899999999 5679998 999999999999985    3999999987      367899999999988664

>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}

Probab=99.26  E-value=5e-13  Score=93.97  Aligned_cols=53  Identities=30%  Similarity=0.760  Sum_probs=43.9

Q ss_pred             cCCcccccccccccCCCeecccCCcchHHhHhcCC-----------CCCCCCcccc--cccccHHHH
Q 020453           21 IGPLSCMICQALLFECSKCTPCSHVYCKACISRFK-----------DCPLCGADIE--KIEADTTLQ   74 (326)
Q Consensus        21 ~~~l~C~iC~~~l~~~p~~l~C~h~fC~~Cl~~~~-----------~CP~Cr~~~~--~~~~n~~l~   74 (326)
                      .+.+.|+||++. +.+|++++|||+||..|+..|+           .||.||..+.  .+..|..+.
T Consensus        10 ~~~~~C~IC~~~-~~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~   75 (79)
T 2egp_A           10 QEEVTCPICLEL-LTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHLQANQHLA   75 (79)
T ss_dssp             CCCCEETTTTEE-CSSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSGGGTCSSSC
T ss_pred             ccCCCCcCCCcc-cCCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhhCCcCHHHH
Confidence            368999999999 5779999999999999999875           3999999986  355565543

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}

Probab=99.26  E-value=4e-12  Score=96.11  Aligned_cols=63  Identities=21%  Similarity=0.605  Sum_probs=53.7

Q ss_pred             ccCCcccccccccccCCCeecccCCcchHHhHhcCCC-----CCCCCcccc---------cccccHHHHHHHHHHHhc
Q 020453           20 KIGPLSCMICQALLFECSKCTPCSHVYCKACISRFKD-----CPLCGADIE---------KIEADTTLQDVVDRFIEG   83 (326)
Q Consensus        20 ~~~~l~C~iC~~~l~~~p~~l~C~h~fC~~Cl~~~~~-----CP~Cr~~~~---------~~~~n~~l~~~~~~~~~~   83 (326)
                      ..+++.|+||++. +.+|++++|||+||..||..|+.     ||.||..+.         .+..|..+.+++.++...
T Consensus        12 ~~~~~~C~iC~~~-~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~n~~l~~~i~~~~p~   88 (115)
T 3l11_A           12 SLSECQCGICMEI-LVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSSWTRYHTRRNSLVNVELWTIIQKHYPR   88 (115)
T ss_dssp             CHHHHBCTTTCSB-CSSCEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHHHHHHHHHTTCCBCHHHHHHHHHHSHH
T ss_pred             CCCCCCCccCCcc-cCceeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCccccccccccchhhHHHHHHHHHHCCH
Confidence            3468999999999 46699999999999999999973     999999875         366789999999887654

>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}

Probab=99.25  E-value=1.7e-12  Score=102.55  Aligned_cols=61  Identities=33%  Similarity=0.686  Sum_probs=54.3

Q ss_pred             CCcccccccccccCCCeecccCCcchHHhHhcCC-----CCCCCCcccc---cccccHHHHHHHHHHHhc
Q 020453           22 GPLSCMICQALLFECSKCTPCSHVYCKACISRFK-----DCPLCGADIE---KIEADTTLQDVVDRFIEG   83 (326)
Q Consensus        22 ~~l~C~iC~~~l~~~p~~l~C~h~fC~~Cl~~~~-----~CP~Cr~~~~---~~~~n~~l~~~~~~~~~~   83 (326)
                      +.+.|+||++. +.+|++++|||+||..||..|+     .||.||..+.   .+.+|..+.++++.+...
T Consensus        77 ~~~~C~IC~~~-~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~n~~l~~lv~~~~p~  145 (150)
T 1z6u_A           77 QSFMCVCCQEL-VYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQNYIMIPNEILQTLLDLFFPG  145 (150)
T ss_dssp             HHTBCTTTSSB-CSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCBCHHHHHHHHHHSTT
T ss_pred             cCCEeecCChh-hcCCEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCCCCCCCCHHHHHHHHHHhhH
Confidence            46899999999 5779999999999999999885     4999999998   478999999999988764

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}

Probab=99.25  E-value=9e-13  Score=96.99  Aligned_cols=61  Identities=23%  Similarity=0.569  Sum_probs=52.4

Q ss_pred             CCcccccccccccCCCee-cccCCcchHHhHhcCC-----CCCCCCcccc--cccccHHHHHHHHHHHhc
Q 020453           22 GPLSCMICQALLFECSKC-TPCSHVYCKACISRFK-----DCPLCGADIE--KIEADTTLQDVVDRFIEG   83 (326)
Q Consensus        22 ~~l~C~iC~~~l~~~p~~-l~C~h~fC~~Cl~~~~-----~CP~Cr~~~~--~~~~n~~l~~~~~~~~~~   83 (326)
                      +.+.|+||++. +.+|++ ++|||+||..||..|+     .||.||..+.  .+..|..+.++++.+...
T Consensus        21 ~~~~C~IC~~~-~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~l~~~~~~~~i~~~~~~l   89 (100)
T 3lrq_A           21 EVFRCFICMEK-LRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELVNCRWAEEVTQQLDTL   89 (100)
T ss_dssp             HHTBCTTTCSB-CSSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECTTHHHHHHHHHHH
T ss_pred             CCCCCccCCcc-ccCccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHHHhHhhHHHHHHHHHHHHH
Confidence            67999999999 567999 9999999999999884     4999999987  477888888888876553

>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.25  E-value=2.7e-12  Score=93.17  Aligned_cols=63  Identities=21%  Similarity=0.444  Sum_probs=54.2

Q ss_pred             cCCcccccccccccCCCeecc-cCCcchHHhHhcCC----------CCCC--CCcc-c--ccccccHHHHHHHHHHHhcc
Q 020453           21 IGPLSCMICQALLFECSKCTP-CSHVYCKACISRFK----------DCPL--CGAD-I--EKIEADTTLQDVVDRFIEGH   84 (326)
Q Consensus        21 ~~~l~C~iC~~~l~~~p~~l~-C~h~fC~~Cl~~~~----------~CP~--Cr~~-~--~~~~~n~~l~~~~~~~~~~~   84 (326)
                      .++|.||||+++ +.+||+++ |||+||+.||..||          .||.  |+.. +  ..+.+|..|+++++.+....
T Consensus         5 ~~~~~CPI~~~~-~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~pn~~L~~~I~~~~~~~   83 (94)
T 2yu4_A            5 SSGFTCPITKEE-MKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQDEALRRAIENHNKKR   83 (94)
T ss_dssp             SSCCBCTTTCSB-CSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEEECHHHHHHHHHHHTTC
T ss_pred             CcEeECcCcCch-hcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCcCCHHHHHHHHHHHHHh
Confidence            367999999999 57799996 99999999999885          4999  9855 4  36999999999999987653

>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=99.19  E-value=6.8e-12  Score=81.78  Aligned_cols=44  Identities=36%  Similarity=0.844  Sum_probs=38.8

Q ss_pred             cCCcccccccccccCCCeecccCCcchHHhHhcCC-CCCCCCcccc
Q 020453           21 IGPLSCMICQALLFECSKCTPCSHVYCKACISRFK-DCPLCGADIE   65 (326)
Q Consensus        21 ~~~l~C~iC~~~l~~~p~~l~C~h~fC~~Cl~~~~-~CP~Cr~~~~   65 (326)
                      .+.++|+||++. +.+|++++|||+||..|+..+. .||.||..+.
T Consensus         4 ~~~~~C~IC~~~-~~~p~~l~CgH~fC~~Ci~~~~~~CP~Cr~~~~   48 (56)
T 1bor_A            4 FQFLRCQQCQAE-AKCPKLLPCLHTLCSGCLEASGMQCPICQAPWP   48 (56)
T ss_dssp             CCCSSCSSSCSS-CBCCSCSTTSCCSBTTTCSSSSSSCSSCCSSSS
T ss_pred             ccCCCceEeCCc-cCCeEEcCCCCcccHHHHccCCCCCCcCCcEee
Confidence            467899999999 5779999999999999998864 5999999876

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.19  E-value=1.1e-11  Score=87.42  Aligned_cols=53  Identities=25%  Similarity=0.662  Sum_probs=44.1

Q ss_pred             ccCCcccccccccccCCCeecccCCcchHHhHhcCCC----CCCCCccccc-ccccHHH
Q 020453           20 KIGPLSCMICQALLFECSKCTPCSHVYCKACISRFKD----CPLCGADIEK-IEADTTL   73 (326)
Q Consensus        20 ~~~~l~C~iC~~~l~~~p~~l~C~h~fC~~Cl~~~~~----CP~Cr~~~~~-~~~n~~l   73 (326)
                      ..+.+.|+||++. +.+|++++|||+||..||..|+.    ||.||..+.. +.+|..+
T Consensus        12 ~~~~~~C~IC~~~-~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~l   69 (81)
T 2csy_A           12 EEIPFRCFICRQA-FQNPVVTKCRHYFCESCALEHFRATPRCYICDQPTGGIFNPAKEL   69 (81)
T ss_dssp             CCCCSBCSSSCSB-CCSEEECTTSCEEEHHHHHHHHHHCSBCSSSCCBCCSCCEECHHH
T ss_pred             CCCCCCCcCCCch-hcCeeEccCCCHhHHHHHHHHHHCCCcCCCcCccccccCCcHHHH
Confidence            3367899999999 57799999999999999999864    9999999874 5666443

>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C

Probab=99.16  E-value=9.7e-12  Score=100.13  Aligned_cols=61  Identities=20%  Similarity=0.301  Sum_probs=55.0

Q ss_pred             CCcccccccccccCCCeecccCCcchHHhHhcCCC-----CCCCCcccc--cccccHHHHHHHHHHHhc
Q 020453           22 GPLSCMICQALLFECSKCTPCSHVYCKACISRFKD-----CPLCGADIE--KIEADTTLQDVVDRFIEG   83 (326)
Q Consensus        22 ~~l~C~iC~~~l~~~p~~l~C~h~fC~~Cl~~~~~-----CP~Cr~~~~--~~~~n~~l~~~~~~~~~~   83 (326)
                      +.|.||||+++ +.+||+++|||+||+.||..|+.     ||.|+..+.  .+.+|..|+++++.+...
T Consensus       105 ~~f~CPI~~el-m~DPV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~L~pN~~Lk~~Ie~~~~~  172 (179)
T 2f42_A          105 DYLCGKISFEL-MREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIPNLAMKEVIDAFIQE  172 (179)
T ss_dssp             GGGBCTTTCSB-CSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECHHHHHHHHHHHHH
T ss_pred             HhhcccCcccc-CCCCeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCChhhCcchHHHHHHHHHHHHH
Confidence            68999999999 57799999999999999999862     999999987  489999999999988754

>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A

Probab=99.16  E-value=9.5e-12  Score=94.42  Aligned_cols=67  Identities=27%  Similarity=0.514  Sum_probs=52.7

Q ss_pred             CCCCCCc--ccCCcccccccccccCCCeecccCCcchHHhHhcCC-----CCCCCCccccc--ccccHHHHHHHHHH
Q 020453           13 GYDAQSF--KIGPLSCMICQALLFECSKCTPCSHVYCKACISRFK-----DCPLCGADIEK--IEADTTLQDVVDRF   80 (326)
Q Consensus        13 ~~~~~~~--~~~~l~C~iC~~~l~~~p~~l~C~h~fC~~Cl~~~~-----~CP~Cr~~~~~--~~~n~~l~~~~~~~   80 (326)
                      ||+..+.  ..+.+.|+||++. +.+|++++|||+||..||..|+     .||.||..+..  +.+|..+.+++..+
T Consensus         6 g~~~~~~~~~~~~~~C~IC~~~-~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~i~~l   81 (118)
T 3hct_A            6 GYDVEFDPPLESKYECPICLMA-LREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSL   81 (118)
T ss_dssp             CBCSCBSSCCCGGGBCTTTCSB-CSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHTS
T ss_pred             CCChhhccCCCCCCCCCcCChh-hcCeEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHHhcccCHHHHHHHccc
Confidence            5555532  2367899999999 5679999999999999999885     59999999884  55777777766643

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.13  E-value=1.3e-11  Score=108.17  Aligned_cols=61  Identities=20%  Similarity=0.300  Sum_probs=55.1

Q ss_pred             CCcccccccccccCCCeecccCCcchHHhHhcCCC-----CCCCCcccc--cccccHHHHHHHHHHHhc
Q 020453           22 GPLSCMICQALLFECSKCTPCSHVYCKACISRFKD-----CPLCGADIE--KIEADTTLQDVVDRFIEG   83 (326)
Q Consensus        22 ~~l~C~iC~~~l~~~p~~l~C~h~fC~~Cl~~~~~-----CP~Cr~~~~--~~~~n~~l~~~~~~~~~~   83 (326)
                      +.+.||||+++ +.+||+++|||+||+.||..|+.     ||.|+.++.  .+.+|..++++++.+...
T Consensus       207 ~~~~c~i~~~~-~~dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~l~~n~~l~~~i~~~~~~  274 (281)
T 2c2l_A          207 DYLCGKISFEL-MREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAMKEVIDAFISE  274 (281)
T ss_dssp             STTBCTTTCSB-CSSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCEECHHHHHHHHHHHTT
T ss_pred             cccCCcCcCCH-hcCCeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCchhcCcccHHHHHHHHHHHHH
Confidence            68999999999 57799999999999999998862     999999988  588999999999998754

>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.12  E-value=5.9e-11  Score=81.89  Aligned_cols=44  Identities=27%  Similarity=0.810  Sum_probs=39.3

Q ss_pred             cCCcccccccccccCCCeecccCCcchHHhHhcCC-------CCCCCCcccc
Q 020453           21 IGPLSCMICQALLFECSKCTPCSHVYCKACISRFK-------DCPLCGADIE   65 (326)
Q Consensus        21 ~~~l~C~iC~~~l~~~p~~l~C~h~fC~~Cl~~~~-------~CP~Cr~~~~   65 (326)
                      .+.+.|+||++. +.+|+.++|||+||..||..|+       .||.||..+.
T Consensus        18 ~~~~~C~IC~~~-~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~   68 (73)
T 2ysl_A           18 QEEVICPICLDI-LQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVR   68 (73)
T ss_dssp             CCCCBCTTTCSB-CSSEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCC
T ss_pred             ccCCEeccCCcc-cCCeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCC
Confidence            367899999999 5779999999999999999987       3999998875

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.11  E-value=4.6e-11  Score=81.94  Aligned_cols=45  Identities=29%  Similarity=0.705  Sum_probs=39.8

Q ss_pred             ccCCcccccccccccCCCeecccCCcchHHhHhcCCC----CCCCCcccc
Q 020453           20 KIGPLSCMICQALLFECSKCTPCSHVYCKACISRFKD----CPLCGADIE   65 (326)
Q Consensus        20 ~~~~l~C~iC~~~l~~~p~~l~C~h~fC~~Cl~~~~~----CP~Cr~~~~   65 (326)
                      ..+.+.|+||++. +.+|+.++|||.||..||..|+.    ||.||..+.
T Consensus        12 ~~~~~~C~IC~~~-~~~~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~   60 (71)
T 2d8t_A           12 SLTVPECAICLQT-CVHPVSLPCKHVFCYLCVKGASWLGKRCALCRQEIP   60 (71)
T ss_dssp             SSSCCBCSSSSSB-CSSEEEETTTEEEEHHHHHHCTTCSSBCSSSCCBCC
T ss_pred             CCCCCCCccCCcc-cCCCEEccCCCHHHHHHHHHHHHCCCcCcCcCchhC
Confidence            4477899999999 57799999999999999999863    999999876

>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}

Probab=99.11  E-value=9e-12  Score=97.32  Aligned_cols=52  Identities=21%  Similarity=0.551  Sum_probs=42.9

Q ss_pred             CCCCCCCc---ccCCcccccccccccCCCeecccCCcchHHhHhcCCC-----CCCCCccc
Q 020453           12 FGYDAQSF---KIGPLSCMICQALLFECSKCTPCSHVYCKACISRFKD-----CPLCGADI   64 (326)
Q Consensus        12 ~~~~~~~~---~~~~l~C~iC~~~l~~~p~~l~C~h~fC~~Cl~~~~~-----CP~Cr~~~   64 (326)
                      .||+...+   ..+.+.|+||+++| .+|++++|||+||..||..|+.     ||.||..+
T Consensus        17 ~g~~~~~~~~~l~~~~~C~IC~~~~-~~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~   76 (141)
T 3knv_A           17 PGFSKTLLGTKLEAKYLCSACRNVL-RRPFQAQCGHRYCSFCLASILSSGPQNCAACVHEG   76 (141)
T ss_dssp             CSBCGGGTGGGCCGGGBCTTTCSBC-SSEEECTTSCEEEHHHHHHHGGGSCEECHHHHHTT
T ss_pred             CCcchhhhhccCCcCcCCCCCChhh-cCcEECCCCCccCHHHHHHHHhcCCCCCCCCCCcc
Confidence            46666555   23689999999994 6699999999999999999863     99999864

>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=99.10  E-value=1.3e-11  Score=92.86  Aligned_cols=60  Identities=32%  Similarity=0.822  Sum_probs=49.4

Q ss_pred             CCcccccccccccCCCeecccCCcchHHhHhcCC-------CCCCCCcccc--cccccHHHHHHHHHHHh
Q 020453           22 GPLSCMICQALLFECSKCTPCSHVYCKACISRFK-------DCPLCGADIE--KIEADTTLQDVVDRFIE   82 (326)
Q Consensus        22 ~~l~C~iC~~~l~~~p~~l~C~h~fC~~Cl~~~~-------~CP~Cr~~~~--~~~~n~~l~~~~~~~~~   82 (326)
                      +.+.|+||++. +.+|++++|||+||..||..|+       .||.||..+.  .+..|..+.++++.+..
T Consensus        20 ~~~~C~IC~~~-~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~~~~~~~   88 (112)
T 1jm7_A           20 KILECPICLEL-IKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQESTRFSQLVEELLK   88 (112)
T ss_dssp             HHTSCSSSCCC-CSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCBCCCSSSHHHHHHHH
T ss_pred             CCCCCcccChh-hcCeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhcCccHHHHHHHHHHHH
Confidence            46799999999 5779999999999999998885       4999999887  46667666666666654

>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}

Probab=99.09  E-value=1.5e-11  Score=85.13  Aligned_cols=43  Identities=30%  Similarity=0.828  Sum_probs=38.4

Q ss_pred             CCcccccccccccCCCeecc-cCCcchHHhHhcCC------CCCCCCcccc
Q 020453           22 GPLSCMICQALLFECSKCTP-CSHVYCKACISRFK------DCPLCGADIE   65 (326)
Q Consensus        22 ~~l~C~iC~~~l~~~p~~l~-C~h~fC~~Cl~~~~------~CP~Cr~~~~   65 (326)
                      +.+.|+||++. +.+|++++ |||+||..||..|+      .||.||..+.
T Consensus        14 ~~~~C~IC~~~-~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~   63 (74)
T 2yur_A           14 DELLCLICKDI-MTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV   63 (74)
T ss_dssp             GGGSCSSSCCC-CTTCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSC
T ss_pred             CCCCCcCCChH-HhCCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCC
Confidence            67899999999 57799999 99999999999885      4999999754

>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B

Probab=99.09  E-value=2.2e-11  Score=98.10  Aligned_cols=61  Identities=23%  Similarity=0.663  Sum_probs=51.7

Q ss_pred             CCcccccccccccCCCeec-ccCCcchHHhHhcCC-----CCCCCCcccc---cccccHHHHHHHHHHHhc
Q 020453           22 GPLSCMICQALLFECSKCT-PCSHVYCKACISRFK-----DCPLCGADIE---KIEADTTLQDVVDRFIEG   83 (326)
Q Consensus        22 ~~l~C~iC~~~l~~~p~~l-~C~h~fC~~Cl~~~~-----~CP~Cr~~~~---~~~~n~~l~~~~~~~~~~   83 (326)
                      +.+.|+||++. +.+|+++ +|||+||..||..|+     .||.||..+.   .+.+|..+.++++.+...
T Consensus        53 ~~~~C~IC~~~-~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~~~~l~~~i~~~~~~  122 (165)
T 2ckl_B           53 SELMCPICLDM-LKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYPS  122 (165)
T ss_dssp             HHHBCTTTSSB-CSSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCSGGGEEECHHHHHHHHHHC--
T ss_pred             CCCCCcccChH-hhCcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCCcccCCcCHHHHHHHHHHHcc
Confidence            46799999999 4669987 999999999999985     2999999885   488999999999988653

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.08  E-value=3.5e-11  Score=82.79  Aligned_cols=43  Identities=30%  Similarity=0.773  Sum_probs=38.4

Q ss_pred             CCcccccccccccCCCeec-ccCCcchHHhHhcCC----CCCCCCcccc
Q 020453           22 GPLSCMICQALLFECSKCT-PCSHVYCKACISRFK----DCPLCGADIE   65 (326)
Q Consensus        22 ~~l~C~iC~~~l~~~p~~l-~C~h~fC~~Cl~~~~----~CP~Cr~~~~   65 (326)
                      +.+.|+||++. +.+|+++ +|||+||..||..|+    .||.||..+.
T Consensus        14 ~~~~C~IC~~~-~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~   61 (72)
T 2djb_A           14 PYILCSICKGY-LIDATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVH   61 (72)
T ss_dssp             GGGSCTTTSSC-CSSCEECSSSCCEECHHHHHHHHHHCSSCTTTCCCCC
T ss_pred             CCCCCCCCChH-HHCcCEECCCCCHHHHHHHHHHHHcCCcCCCcCcccC
Confidence            67899999999 4669997 999999999999886    4999999876

>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.07  E-value=2.5e-11  Score=86.36  Aligned_cols=52  Identities=25%  Similarity=0.742  Sum_probs=43.0

Q ss_pred             CCcccccccccccCCCeecccCCcchHHhHhcCC----------CCCCCCcccc--cccccHHHH
Q 020453           22 GPLSCMICQALLFECSKCTPCSHVYCKACISRFK----------DCPLCGADIE--KIEADTTLQ   74 (326)
Q Consensus        22 ~~l~C~iC~~~l~~~p~~l~C~h~fC~~Cl~~~~----------~CP~Cr~~~~--~~~~n~~l~   74 (326)
                      +.+.|+||++. +.+|++++|||+||..|+..|+          .||.||..+.  .+.+|..+.
T Consensus        18 ~~~~C~IC~~~-~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~   81 (85)
T 2ecw_A           18 EEVTCPICLEL-LKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLKPNLHVA   81 (85)
T ss_dssp             TTTSCTTTCSC-CSSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCCEECSCCC
T ss_pred             cCCCCcCCChh-hCcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhCCcCHHHH
Confidence            67899999999 5779999999999999998752          4999999887  355665543

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.07  E-value=2.7e-11  Score=81.85  Aligned_cols=44  Identities=25%  Similarity=0.705  Sum_probs=39.0

Q ss_pred             cCCcccccccccccCCCeecccCCcchHHhHhcCC-----CCCCCCcccc
Q 020453           21 IGPLSCMICQALLFECSKCTPCSHVYCKACISRFK-----DCPLCGADIE   65 (326)
Q Consensus        21 ~~~l~C~iC~~~l~~~p~~l~C~h~fC~~Cl~~~~-----~CP~Cr~~~~   65 (326)
                      .+.+.|+||++. +.+|+.++|||+||..||..|+     .||.||..+.
T Consensus        13 ~~~~~C~IC~~~-~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~   61 (66)
T 2ecy_A           13 EDKYKCEKCHLV-LCSPKQTECGHRFCESCMAALLSSSSPKCTACQESIV   61 (66)
T ss_dssp             CCCEECTTTCCE-ESSCCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCC
T ss_pred             CcCCCCCCCChH-hcCeeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCC
Confidence            367999999999 5779999999999999999886     3999998875

>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.07  E-value=2.2e-11  Score=86.71  Aligned_cols=53  Identities=25%  Similarity=0.716  Sum_probs=43.3

Q ss_pred             cCCcccccccccccCCCeecccCCcchHHhHhcC----------CCCCCCCcccc--cccccHHHH
Q 020453           21 IGPLSCMICQALLFECSKCTPCSHVYCKACISRF----------KDCPLCGADIE--KIEADTTLQ   74 (326)
Q Consensus        21 ~~~l~C~iC~~~l~~~p~~l~C~h~fC~~Cl~~~----------~~CP~Cr~~~~--~~~~n~~l~   74 (326)
                      .+.+.|+||++. +.+|+.++|||+||..|+..|          ..||.||..+.  .+.+|..+.
T Consensus        17 ~~~~~C~IC~~~-~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~   81 (85)
T 2ecv_A           17 KEEVTCPICLEL-LTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIRPNRHVA   81 (85)
T ss_dssp             CCCCCCTTTCSC-CSSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSCCCSCCCC
T ss_pred             cCCCCCCCCCcc-cCCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhcCccHHHH
Confidence            367899999999 577999999999999999876          34999999887  355555443

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=99.06  E-value=8.5e-10  Score=103.95  Aligned_cols=137  Identities=13%  Similarity=0.067  Sum_probs=115.6

Q ss_pred             HHhCCchhHhhHHHHHHHHHHh-CCCChhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchh
Q 020453          176 RAMGDADAAVAYFADSVEFLMK-LPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQV  254 (326)
Q Consensus       176 ~~~h~~H~~~~~~e~~~~~~~~-L~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~  254 (326)
                      ...|++.++.++.+.++....+ |+..+..    +....++|+.++..+|+|++|..+|++++++.+.....+..     
T Consensus       320 ~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~----~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp-----  390 (490)
T 3n71_A          320 RSEGLYHEVVKLCRECLEKQEPVFADTNLY----VLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNA-----  390 (490)
T ss_dssp             HTTTCHHHHHHHHHHHHHHHTTTBCTTSHH----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCH-----
T ss_pred             HhCCCHHHHHHHHHHHHHHHHHhcCCCCHH----HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCH-----
Confidence            3567888999999988877655 5655554    56788999999999999999999999999999998887655     


Q ss_pred             hhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh--hcCCCchhHHhhccchhhhHHHHhHHhcCcccc
Q 020453          255 LDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL--TLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFR  324 (326)
Q Consensus       255 ~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l--~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (326)
                       +++.++++||.+|..+|++++|+.+|++|++|++..  ..||..+.++..+  ...+..++.+.++..-|+
T Consensus       391 -~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l--~~~~~e~~~~~~ae~~~~  459 (490)
T 3n71_A          391 -QLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMR--MQTEMELRMFRQNEFMYH  459 (490)
T ss_dssp             -HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Confidence             789999999999999999999999999999999987  6678888888777  777777777777765554

>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A

Probab=99.04  E-value=5.9e-11  Score=82.04  Aligned_cols=44  Identities=30%  Similarity=0.652  Sum_probs=40.0

Q ss_pred             CCcccccccccccCCCeecccCCc-chHHhHhcCCCCCCCCccccc
Q 020453           22 GPLSCMICQALLFECSKCTPCSHV-YCKACISRFKDCPLCGADIEK   66 (326)
Q Consensus        22 ~~l~C~iC~~~l~~~p~~l~C~h~-fC~~Cl~~~~~CP~Cr~~~~~   66 (326)
                      +.+.|+||++. +.+|+.+||||. ||..|+..|..||.||..+..
T Consensus        23 ~~~~C~iC~~~-~~~~~~~pCgH~~~C~~C~~~~~~CP~Cr~~i~~   67 (74)
T 4ic3_A           23 EEKLCKICMDR-NIAIVFVPCGHLVTCKQCAEAVDKCPMCYTVITF   67 (74)
T ss_dssp             HHTBCTTTSSS-BCCEEEETTCCBCCCHHHHTTCSBCTTTCCBCSE
T ss_pred             cCCCCCCCCCC-CCCEEEcCCCChhHHHHhhhcCccCCCcCcCccC
Confidence            46899999999 577999999999 999999999889999998874

>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}

Probab=99.03  E-value=9.8e-11  Score=98.77  Aligned_cols=61  Identities=20%  Similarity=0.382  Sum_probs=53.8

Q ss_pred             CCcccccccccccCCCeec-ccCCcchHHhHhcCCC------CCC--CCcccc--cccccHHHHHHHHHHHhc
Q 020453           22 GPLSCMICQALLFECSKCT-PCSHVYCKACISRFKD------CPL--CGADIE--KIEADTTLQDVVDRFIEG   83 (326)
Q Consensus        22 ~~l~C~iC~~~l~~~p~~l-~C~h~fC~~Cl~~~~~------CP~--Cr~~~~--~~~~n~~l~~~~~~~~~~   83 (326)
                      .+++||||+++ +.+||+. .|||+||+.||..||.      ||.  |+..+.  .+.+|..|.++++.....
T Consensus       180 ~el~CPIcl~~-f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL~pN~~L~~lve~~k~r  251 (267)
T 3htk_C          180 IELTCPITCKP-YEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFVRDPIMELRCKIAKMK  251 (267)
T ss_dssp             CCSBCTTTSSB-CSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGEEECHHHHHHHHHHHHH
T ss_pred             eeeECcCccCc-ccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhCCcCHHHHHHHHHHHHH
Confidence            67999999999 5779985 9999999999999874      999  999876  589999999999877654

>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.01  E-value=1.9e-10  Score=76.85  Aligned_cols=39  Identities=31%  Similarity=0.883  Sum_probs=34.5

Q ss_pred             cCCcccccccccccCCCeecccCCcchHHhHhcCC-------CCCCC
Q 020453           21 IGPLSCMICQALLFECSKCTPCSHVYCKACISRFK-------DCPLC   60 (326)
Q Consensus        21 ~~~l~C~iC~~~l~~~p~~l~C~h~fC~~Cl~~~~-------~CP~C   60 (326)
                      .+.+.|+||++. +.+|++++|||+||..||.+|+       .||.|
T Consensus        18 ~~~~~C~IC~~~-~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C   63 (63)
T 2ysj_A           18 QEEVICPICLDI-LQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC   63 (63)
T ss_dssp             CCCCBCTTTCSB-CSSCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred             ccCCCCCcCCch-hCCeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence            368899999999 5779999999999999999885       38887

>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.01  E-value=6.9e-11  Score=84.69  Aligned_cols=44  Identities=30%  Similarity=0.764  Sum_probs=38.9

Q ss_pred             cCCcccccccccccCC----CeecccCCcchHHhHhcCC-------CCCCCCcccc
Q 020453           21 IGPLSCMICQALLFEC----SKCTPCSHVYCKACISRFK-------DCPLCGADIE   65 (326)
Q Consensus        21 ~~~l~C~iC~~~l~~~----p~~l~C~h~fC~~Cl~~~~-------~CP~Cr~~~~   65 (326)
                      .+.+.|+||++. +.+    |+.++|||+||..|+..|+       .||.||..+.
T Consensus        13 ~~~~~C~IC~~~-~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~   67 (88)
T 2ct2_A           13 REVLECPICMES-FTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITR   67 (88)
T ss_dssp             CSCCBCTTTCCB-CCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBC
T ss_pred             cCCCCCccCCcc-ccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCccc
Confidence            367899999999 577    9999999999999999883       4999999876

>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=99.00  E-value=1e-10  Score=78.72  Aligned_cols=43  Identities=23%  Similarity=0.781  Sum_probs=37.1

Q ss_pred             CCcccccccc-cccCCC----eecccCCcchHHhHhcCC-----CCCCCCcccc
Q 020453           22 GPLSCMICQA-LLFECS----KCTPCSHVYCKACISRFK-----DCPLCGADIE   65 (326)
Q Consensus        22 ~~l~C~iC~~-~l~~~p----~~l~C~h~fC~~Cl~~~~-----~CP~Cr~~~~   65 (326)
                      +++.||||++ . +.+|    +.++|||+||..|+.+|+     .||.||..+.
T Consensus         2 ~~~~C~IC~~~~-~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~   54 (65)
T 1g25_A            2 DDQGCPRCKTTK-YRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLR   54 (65)
T ss_dssp             CTTCCSTTTTHH-HHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCS
T ss_pred             CCCcCCcCCCCc-cCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccc
Confidence            6789999999 7 4667    578999999999999883     4999999886

>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B

Probab=98.98  E-value=2.5e-10  Score=79.37  Aligned_cols=46  Identities=26%  Similarity=0.659  Sum_probs=37.9

Q ss_pred             cCCccccccccccc-CCCeecc--cCCcchHHhHhcCC-----CCCCCCccccc
Q 020453           21 IGPLSCMICQALLF-ECSKCTP--CSHVYCKACISRFK-----DCPLCGADIEK   66 (326)
Q Consensus        21 ~~~l~C~iC~~~l~-~~p~~l~--C~h~fC~~Cl~~~~-----~CP~Cr~~~~~   66 (326)
                      .++++||||++.+- .+++.+|  |||+||+.|+..+|     .||.||+.+..
T Consensus         9 ~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~   62 (78)
T 1e4u_A            9 EDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPE   62 (78)
T ss_dssp             CCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSS
T ss_pred             ccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCC
Confidence            47899999999842 3466666  99999999999887     39999998873

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=98.98  E-value=1.1e-10  Score=94.53  Aligned_cols=68  Identities=26%  Similarity=0.519  Sum_probs=53.3

Q ss_pred             CCCCCCc--ccCCcccccccccccCCCeecccCCcchHHhHhcCC-----CCCCCCccccc--ccccHHHHHHHHHHH
Q 020453           13 GYDAQSF--KIGPLSCMICQALLFECSKCTPCSHVYCKACISRFK-----DCPLCGADIEK--IEADTTLQDVVDRFI   81 (326)
Q Consensus        13 ~~~~~~~--~~~~l~C~iC~~~l~~~p~~l~C~h~fC~~Cl~~~~-----~CP~Cr~~~~~--~~~n~~l~~~~~~~~   81 (326)
                      |++..+.  ..+.+.|+||+++ +.+|++++|||+||..||..|+     .||.||..+..  +.++..+.+++..+.
T Consensus         6 g~~~~~~~~~~~~~~C~IC~~~-~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~i~~l~   82 (170)
T 3hcs_A            6 GYDVEFDPPLESKYECPICLMA-LREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSLM   82 (170)
T ss_dssp             CBCSEESSCCCGGGBCTTTCSB-CSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHTSE
T ss_pred             CCChhhccCCCCCCCCCCCChh-hcCcEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchhhhhhhHHHHHHHhhcc
Confidence            5555533  2367999999999 4669999999999999999985     59999999884  566777777776543

>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1

Probab=98.98  E-value=8.5e-11  Score=88.89  Aligned_cols=57  Identities=25%  Similarity=0.624  Sum_probs=45.4

Q ss_pred             CCcccccccccccCCCeecccCCcchHHhHhcCC-----CCCCCCccccc---ccccHHHHHHHHH
Q 020453           22 GPLSCMICQALLFECSKCTPCSHVYCKACISRFK-----DCPLCGADIEK---IEADTTLQDVVDR   79 (326)
Q Consensus        22 ~~l~C~iC~~~l~~~p~~l~C~h~fC~~Cl~~~~-----~CP~Cr~~~~~---~~~n~~l~~~~~~   79 (326)
                      +.+.|+||++. +.+|++++|||+||..||.+|+     .||.||..+..   ...+..+.+++..
T Consensus        22 ~~~~C~IC~~~-~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~l~~~i~~   86 (116)
T 1rmd_A           22 KSISCQICEHI-LADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLNILNS   86 (116)
T ss_dssp             HHTBCTTTCSB-CSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCBCCCHHHHHHHHH
T ss_pred             CCCCCCCCCcH-hcCcEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhhccccHHHHHHHHHH
Confidence            57899999999 5779999999999999998885     39999999873   3345555555543

>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.96  E-value=3.8e-10  Score=73.99  Aligned_cols=38  Identities=37%  Similarity=0.950  Sum_probs=33.7

Q ss_pred             CCcccccccccccCCCeecccCCcchHHhHhcCC-------CCCCC
Q 020453           22 GPLSCMICQALLFECSKCTPCSHVYCKACISRFK-------DCPLC   60 (326)
Q Consensus        22 ~~l~C~iC~~~l~~~p~~l~C~h~fC~~Cl~~~~-------~CP~C   60 (326)
                      +.+.|+||++. +.+|+.++|||+||..||..|+       .||.|
T Consensus        14 ~~~~C~IC~~~-~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C   58 (58)
T 2ecj_A           14 VEASCSVCLEY-LKEPVIIECGHNFCKACITRWWEDLERDFPCPVC   58 (58)
T ss_dssp             CCCBCSSSCCB-CSSCCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred             cCCCCccCCcc-cCccEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence            67899999999 5779999999999999999983       38887

>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A

Probab=98.94  E-value=1.7e-10  Score=80.67  Aligned_cols=44  Identities=30%  Similarity=0.860  Sum_probs=39.9

Q ss_pred             CCcccccccccccCCCeecccCCc-chHHhHhcCCCCCCCCccccc
Q 020453           22 GPLSCMICQALLFECSKCTPCSHV-YCKACISRFKDCPLCGADIEK   66 (326)
Q Consensus        22 ~~l~C~iC~~~l~~~p~~l~C~h~-fC~~Cl~~~~~CP~Cr~~~~~   66 (326)
                      +...|+||++. +.+|+.+||||. ||..|+..++.||.||..+..
T Consensus        17 ~~~~C~IC~~~-~~~~v~~pCgH~~~C~~C~~~~~~CP~Cr~~i~~   61 (79)
T 2yho_A           17 EAMLCMVCCEE-EINSTFCPCGHTVCCESCAAQLQSCPVCRSRVEH   61 (79)
T ss_dssp             HHTBCTTTSSS-BCCEEEETTCBCCBCHHHHTTCSBCTTTCCBCCE
T ss_pred             CCCEeEEeCcc-cCcEEEECCCCHHHHHHHHHhcCcCCCCCchhhC
Confidence            45789999999 577999999999 999999999999999999884

>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}

Probab=98.94  E-value=8.7e-11  Score=80.54  Aligned_cols=45  Identities=33%  Similarity=0.763  Sum_probs=39.1

Q ss_pred             ccCCcccccccccccCCC-------eecccCCcchHHhHhcCC----CCCCCCcccc
Q 020453           20 KIGPLSCMICQALLFECS-------KCTPCSHVYCKACISRFK----DCPLCGADIE   65 (326)
Q Consensus        20 ~~~~l~C~iC~~~l~~~p-------~~l~C~h~fC~~Cl~~~~----~CP~Cr~~~~   65 (326)
                      ..+.+.|+||++.+ .+|       +.++|||+||..||.+|+    .||.||..+.
T Consensus         7 ~~~~~~C~IC~~~~-~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~   62 (71)
T 3ng2_A            7 PSGTVSCPICMDGY-SEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN   62 (71)
T ss_dssp             CTTCCBCTTTCCBH-HHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCC
T ss_pred             CCCCCCCcccChhh-hccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccC
Confidence            34788999999994 557       899999999999999886    4999999877

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.93  E-value=1.5e-10  Score=78.76  Aligned_cols=45  Identities=33%  Similarity=0.763  Sum_probs=38.4

Q ss_pred             ccCCcccccccccccCCC-------eecccCCcchHHhHhcCC----CCCCCCcccc
Q 020453           20 KIGPLSCMICQALLFECS-------KCTPCSHVYCKACISRFK----DCPLCGADIE   65 (326)
Q Consensus        20 ~~~~l~C~iC~~~l~~~p-------~~l~C~h~fC~~Cl~~~~----~CP~Cr~~~~   65 (326)
                      ..+.+.|+||++.+ .+|       +.++|||.||..||..|+    .||.||..+.
T Consensus        12 ~~~~~~C~IC~~~~-~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~   67 (69)
T 2ea6_A           12 PSGTVSCPICMDGY-SEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN   67 (69)
T ss_dssp             TTCCCCCTTTCCCH-HHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCC
T ss_pred             CCCCCCCcccCccc-cccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccC
Confidence            34788999999994 546       899999999999999985    4999998764

>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.92  E-value=2.7e-10  Score=78.91  Aligned_cols=44  Identities=30%  Similarity=0.652  Sum_probs=39.8

Q ss_pred             CCcccccccccccCCCeecccCCc-chHHhHhcCCCCCCCCccccc
Q 020453           22 GPLSCMICQALLFECSKCTPCSHV-YCKACISRFKDCPLCGADIEK   66 (326)
Q Consensus        22 ~~l~C~iC~~~l~~~p~~l~C~h~-fC~~Cl~~~~~CP~Cr~~~~~   66 (326)
                      +.+.|+||++. +.+|+.+||||. ||..|+.....||.||..+..
T Consensus        24 ~~~~C~IC~~~-~~~~~~~pCgH~~~C~~C~~~~~~CP~Cr~~i~~   68 (75)
T 2ecg_A           24 EEKLCKICMDR-NIAIVFVPCGHLVTCKQCAEAVDKCPMCYTVITF   68 (75)
T ss_dssp             HHHSCSSSCSS-CCCBCCSSSCCCCBCHHHHHHCSBCTTTCCBCCC
T ss_pred             CCCCCCcCCCC-CCCEEEecCCCHHHHHHHhhCCCCCccCCceecC
Confidence            46789999999 577999999999 999999988889999998874

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=98.90  E-value=9.9e-09  Score=95.16  Aligned_cols=116  Identities=14%  Similarity=0.087  Sum_probs=97.2

Q ss_pred             CCchhHhhHHHHHHHHHHh-CCCChhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhH
Q 020453          179 GDADAAVAYFADSVEFLMK-LPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDV  257 (326)
Q Consensus       179 h~~H~~~~~~e~~~~~~~~-L~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~l  257 (326)
                      +++.++..+.+.++.++.+ |++.+..    +....++|+.++..+|+|++|..+|++++++.++....+..      ++
T Consensus       312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~----~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp------~~  381 (433)
T 3qww_A          312 KSPSELLEICELSQEKMSSVFEDSNVY----MLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSL------NV  381 (433)
T ss_dssp             SCHHHHHHHHHHHHHHHTTTBCTTSHH----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCH------HH
T ss_pred             cCHHHHHHHHHHHHHHhhCccChhchH----HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCCh------HH
Confidence            4567888888888876654 5665554    46788999999999999999999999999999998887765      78


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh--hcCCCchhHHhhc
Q 020453          258 AVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL--TLKPEEAGLEQRC  304 (326)
Q Consensus       258 a~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l--~~~p~~~~~~~~~  304 (326)
                      +.++++||.+|..+|++++|+.+|++|++|++..  ..||..+.+.+++
T Consensus       382 a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l~~~l  430 (433)
T 3qww_A          382 ASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEIKQEI  430 (433)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence            9999999999999999999999999999999886  5566655555444

>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1

Probab=98.87  E-value=1e-09  Score=71.04  Aligned_cols=43  Identities=30%  Similarity=0.807  Sum_probs=36.6

Q ss_pred             CCcccccccccccCC---Ceecc-cCCcchHHhHhcCCC----CCCCCcccc
Q 020453           22 GPLSCMICQALLFEC---SKCTP-CSHVYCKACISRFKD----CPLCGADIE   65 (326)
Q Consensus        22 ~~l~C~iC~~~l~~~---p~~l~-C~h~fC~~Cl~~~~~----CP~Cr~~~~   65 (326)
                      +...|+||++.+ ..   ++.++ |||.||..|+.+|+.    ||.||..+.
T Consensus         4 ~~~~C~IC~~~~-~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~   54 (55)
T 1iym_A            4 DGVECAVCLAEL-EDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV   54 (55)
T ss_dssp             CSCCCTTTCCCC-CTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred             CCCcCccCCccc-cCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence            567899999984 54   78887 999999999999964    999998753

>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.86  E-value=4.9e-10  Score=77.65  Aligned_cols=51  Identities=24%  Similarity=0.770  Sum_probs=40.7

Q ss_pred             CCCCCcccCCcccccccccccCCC---eecccCCcchHHhHhcCC----CCCCCCcccc
Q 020453           14 YDAQSFKIGPLSCMICQALLFECS---KCTPCSHVYCKACISRFK----DCPLCGADIE   65 (326)
Q Consensus        14 ~~~~~~~~~~l~C~iC~~~l~~~p---~~l~C~h~fC~~Cl~~~~----~CP~Cr~~~~   65 (326)
                      +.......+...|+||++.+ ..+   +.++|+|.||..||..|+    .||.||..+.
T Consensus        14 ~~~~~~~~~~~~C~IC~~~~-~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~   71 (75)
T 1x4j_A           14 FNPNNHQSEQTLCVVCMCDF-ESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSG   71 (75)
T ss_dssp             BCSSSCSSSCCEETTTTEEC-CBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCC
T ss_pred             ecCccccCCCCCCeECCccc-CCCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCC
Confidence            44334445778999999984 546   789999999999999985    4999998765

>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}

Probab=98.85  E-value=2.3e-10  Score=76.67  Aligned_cols=43  Identities=33%  Similarity=0.750  Sum_probs=37.4

Q ss_pred             CCcccccccccccCCC-------eecccCCcchHHhHhcCC----CCCCCCcccc
Q 020453           22 GPLSCMICQALLFECS-------KCTPCSHVYCKACISRFK----DCPLCGADIE   65 (326)
Q Consensus        22 ~~l~C~iC~~~l~~~p-------~~l~C~h~fC~~Cl~~~~----~CP~Cr~~~~   65 (326)
                      +.+.|+||++.+ .+|       +.++|||.||..|+.+|+    .||.||..+.
T Consensus         2 ~~~~C~IC~~~~-~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~   55 (64)
T 2xeu_A            2 AMVSCPICMDGY-SEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN   55 (64)
T ss_dssp             CCCBCTTTCCBH-HHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCT
T ss_pred             CCCCCCccChhh-hCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCC
Confidence            568999999994 546       899999999999999886    4999999876

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1

Probab=98.84  E-value=4.6e-10  Score=76.19  Aligned_cols=44  Identities=34%  Similarity=0.800  Sum_probs=37.6

Q ss_pred             CCcccccccccccCCC-eecccCCcchHHhHhcCC----CCCCCCccccc
Q 020453           22 GPLSCMICQALLFECS-KCTPCSHVYCKACISRFK----DCPLCGADIEK   66 (326)
Q Consensus        22 ~~l~C~iC~~~l~~~p-~~l~C~h~fC~~Cl~~~~----~CP~Cr~~~~~   66 (326)
                      +...|+||++.+ .+| +.++|||.||..|+.+|+    .||.||..+..
T Consensus         4 ~~~~C~IC~~~~-~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~   52 (68)
T 1chc_A            4 VAERCPICLEDP-SNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVES   52 (68)
T ss_dssp             CCCCCSSCCSCC-CSCEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCCC
T ss_pred             CCCCCeeCCccc-cCCcEecCCCCeeHHHHHHHHHhCcCcCcCCChhhHh
Confidence            567899999995 555 899999999999999885    49999998764

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=98.83  E-value=4.4e-09  Score=97.54  Aligned_cols=118  Identities=10%  Similarity=-0.064  Sum_probs=99.9

Q ss_pred             ChhHHHHHHHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHH
Q 020453          201 DDLEIIHTLSVSLNKIGDLKY--YGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAV  278 (326)
Q Consensus       201 ~~~~~~~~i~~~~~~l~~l~~--~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~  278 (326)
                      ....++..+......+.....  ..|+|++|+..|++++++.+++...+..      +++.++++||.+|..+|++++|+
T Consensus       287 ~~e~v~~~~~~~~~~le~~~~~~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp------~~a~~~~nLa~~y~~~g~~~eA~  360 (433)
T 3qww_A          287 QAEAIRDMVRYARNVIEEFRRAKHYKSPSELLEICELSQEKMSSVFEDSNV------YMLHMMYQAMGVCLYMQDWEGAL  360 (433)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHTTTBCTTSH------HHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHHHhhCccChhch------HHHHHHHHHHHHHHhhcCHHHHH
Confidence            334455555555566666553  3579999999999999999887766544      78999999999999999999999


Q ss_pred             HHHHHHHHHHHHh--hcCCCchhHHhhccchhhhHHHHhHHhcCcccccC
Q 020453          279 DGFQEAIKRLESL--TLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRSA  326 (326)
Q Consensus       279 ~~~~~~~~~~~~l--~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (326)
                      .+|++++++.+++  ..+|+.+..+.++  +.++..+|++.+|++.|++|
T Consensus       361 ~~~~~aL~i~~~~lG~~Hp~~a~~l~nL--a~~~~~qg~~~eA~~~~~~A  408 (433)
T 3qww_A          361 KYGQKIIKPYSKHYPVYSLNVASMWLKL--GRLYMGLENKAAGEKALKKA  408 (433)
T ss_dssp             HHHHHHHHHHHHHSCSSCHHHHHHHHHH--HHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCChHHHHHHHHH--HHHHHhccCHHHHHHHHHHH
Confidence            9999999999998  7789999999999  99999999999999988765

>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.82  E-value=1.4e-09  Score=75.93  Aligned_cols=45  Identities=24%  Similarity=0.749  Sum_probs=37.4

Q ss_pred             ccCCcccccccccccCCC---eecccCCcchHHhHhcCCC----CCCCCcccc
Q 020453           20 KIGPLSCMICQALLFECS---KCTPCSHVYCKACISRFKD----CPLCGADIE   65 (326)
Q Consensus        20 ~~~~l~C~iC~~~l~~~p---~~l~C~h~fC~~Cl~~~~~----CP~Cr~~~~   65 (326)
                      ..+.+.|+||++.+ ..+   +.++|+|.||..||..|+.    ||.||..+.
T Consensus        12 ~~~~~~C~IC~~~~-~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~   63 (78)
T 2ect_A           12 VGSGLECPVCKEDY-ALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLT   63 (78)
T ss_dssp             SSSSCCCTTTTSCC-CTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCC
T ss_pred             CCCCCCCeeCCccc-cCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccC
Confidence            34678999999984 444   5679999999999999863    999999887

>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A

Probab=98.80  E-value=8.2e-10  Score=71.50  Aligned_cols=44  Identities=27%  Similarity=0.760  Sum_probs=37.1

Q ss_pred             CCcccccccccccC---CCeecccCCcchHHhHhcCC----CCCCCCcccc
Q 020453           22 GPLSCMICQALLFE---CSKCTPCSHVYCKACISRFK----DCPLCGADIE   65 (326)
Q Consensus        22 ~~l~C~iC~~~l~~---~p~~l~C~h~fC~~Cl~~~~----~CP~Cr~~~~   65 (326)
                      +...|+||++.+.+   .++.++|||.||..|+..|+    .||.||..+.
T Consensus         4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~   54 (55)
T 2ecm_A            4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS   54 (55)
T ss_dssp             CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred             CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence            56789999998533   38889999999999999985    5999998764

>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.80  E-value=1e-09  Score=74.94  Aligned_cols=42  Identities=31%  Similarity=0.880  Sum_probs=37.4

Q ss_pred             CCcccccccccccCCCeecccCCcchHHhHhcCCC----CCCCCcccc
Q 020453           22 GPLSCMICQALLFECSKCTPCSHVYCKACISRFKD----CPLCGADIE   65 (326)
Q Consensus        22 ~~l~C~iC~~~l~~~p~~l~C~h~fC~~Cl~~~~~----CP~Cr~~~~   65 (326)
                      +.+.|+||++. +.+ +.++|||.||..|+..|+.    ||.||..+.
T Consensus        14 ~~~~C~IC~~~-~~~-~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~   59 (70)
T 2ecn_A           14 DEEECCICMDG-RAD-LILPCAHSFCQKCIDKWSDRHRNCPICRLQMT   59 (70)
T ss_dssp             CCCCCSSSCCS-CCS-EEETTTEEECHHHHHHSSCCCSSCHHHHHCTT
T ss_pred             CCCCCeeCCcC-ccC-cccCCCCcccHHHHHHHHHCcCcCCCcCCccc
Confidence            67899999999 465 9999999999999999864    999998876

>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}

Probab=98.79  E-value=2e-09  Score=73.25  Aligned_cols=46  Identities=33%  Similarity=0.820  Sum_probs=38.2

Q ss_pred             cCCccccccccccc--CCCeecccCCcchHHhHhcCC----CCCCCCccccc
Q 020453           21 IGPLSCMICQALLF--ECSKCTPCSHVYCKACISRFK----DCPLCGADIEK   66 (326)
Q Consensus        21 ~~~l~C~iC~~~l~--~~p~~l~C~h~fC~~Cl~~~~----~CP~Cr~~~~~   66 (326)
                      .+...|+||++.+.  ..++.++|||.||..||..|+    .||.||..+..
T Consensus        12 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~   63 (69)
T 2kiz_A           12 DTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEA   63 (69)
T ss_dssp             TCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSCS
T ss_pred             CCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCccccC
Confidence            35788999999843  347889999999999999985    39999998763

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.78  E-value=9.4e-09  Score=96.83  Aligned_cols=116  Identities=9%  Similarity=-0.039  Sum_probs=97.5

Q ss_pred             hHHHHHHHHHHHHHHHHH--HhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHH
Q 020453          203 LEIIHTLSVSLNKIGDLK--YYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDG  280 (326)
Q Consensus       203 ~~~~~~i~~~~~~l~~l~--~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~  280 (326)
                      ..+...++.....++...  ..+|+|++|+..|++++++.+.+...+..      +++.++++||.+|..+|++++|+.+
T Consensus       300 e~v~~~l~~a~~~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp------~~a~~~~nLa~~y~~~g~~~eA~~~  373 (490)
T 3n71_A          300 EVVKEMIQFSKDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNL------YVLRLLSIASEVLSYLQAYEEASHY  373 (490)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSH------HHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCH------HHHHHHHHHHHHHHHhcCHHHHHHH
Confidence            344454554544444443  46799999999999999999887776544      7899999999999999999999999


Q ss_pred             HHHHHHHHHHh--hcCCCchhHHhhccchhhhHHHHhHHhcCcccccC
Q 020453          281 FQEAIKRLESL--TLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRSA  326 (326)
Q Consensus       281 ~~~~~~~~~~l--~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (326)
                      |++++++.+++  ..+|+.+..+.++  +.++..+|++.+|++.|++|
T Consensus       374 ~~~aL~i~~~~lG~~Hp~~a~~l~nL--a~~~~~~G~~~eA~~~~~~A  419 (490)
T 3n71_A          374 ARRMVDGYMKLYHHNNAQLGMAVMRA--GLTNWHAGHIEVGHGMICKA  419 (490)
T ss_dssp             HHHHHHHHHHHSCTTCHHHHHHHHHH--HHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHHH--HHHHHHCCCHHHHHHHHHHH
Confidence            99999999988  7789999999999  99999999999999988765

>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}

Probab=98.77  E-value=1.2e-09  Score=78.73  Aligned_cols=43  Identities=28%  Similarity=0.748  Sum_probs=37.0

Q ss_pred             CCcccccccccccCC---CeecccCCcchHHhHhcCCC----CCCCCcccc
Q 020453           22 GPLSCMICQALLFEC---SKCTPCSHVYCKACISRFKD----CPLCGADIE   65 (326)
Q Consensus        22 ~~l~C~iC~~~l~~~---p~~l~C~h~fC~~Cl~~~~~----CP~Cr~~~~   65 (326)
                      +...|+||++. +..   ++.++|||.||..||..|+.    ||.||..+.
T Consensus        39 ~~~~C~IC~~~-~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~   88 (91)
T 2l0b_A           39 QEMCCPICCSE-YVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFP   88 (91)
T ss_dssp             SCSEETTTTEE-CCTTCEEEEETTTEEEEHHHHHHHHTTTCBCTTTCCBSS
T ss_pred             CCCCCcccChh-hcCCCcEEecCCCChHHHHHHHHHHHcCCcCcCcCccCC
Confidence            56789999998 454   77899999999999999864    999998765

>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.76  E-value=5.4e-09  Score=70.64  Aligned_cols=46  Identities=26%  Similarity=0.747  Sum_probs=40.9

Q ss_pred             ccCCcccccccccccCCCeecccCCc-chHHhHhcCCCCCCCCccccc
Q 020453           20 KIGPLSCMICQALLFECSKCTPCSHV-YCKACISRFKDCPLCGADIEK   66 (326)
Q Consensus        20 ~~~~l~C~iC~~~l~~~p~~l~C~h~-fC~~Cl~~~~~CP~Cr~~~~~   66 (326)
                      ..+...|+||++. ..+++.+||||. ||..|+.....||.||..+..
T Consensus        12 ~~~~~~C~IC~~~-~~~~v~~pCgH~~~C~~C~~~~~~CP~CR~~i~~   58 (68)
T 2ea5_A           12 EENSKDCVVCQNG-TVNWVLLPCRHTCLCDGCVKYFQQCPMCRQFVQE   58 (68)
T ss_dssp             CCCSSCCSSSSSS-CCCCEETTTTBCCSCTTHHHHCSSCTTTCCCCCC
T ss_pred             CCCCCCCCCcCcC-CCCEEEECCCChhhhHHHHhcCCCCCCCCcchhc
Confidence            3467899999999 577999999999 999999998899999998874

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=98.74  E-value=4.8e-08  Score=90.58  Aligned_cols=118  Identities=16%  Similarity=0.014  Sum_probs=95.4

Q ss_pred             HhCCchhHhhHHHHHHHHHH-hCCCChhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhh
Q 020453          177 AMGDADAAVAYFADSVEFLM-KLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVL  255 (326)
Q Consensus       177 ~~h~~H~~~~~~e~~~~~~~-~L~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~  255 (326)
                      ..+++.++..+.+.++.... .|++.+.    .+....++|+.+...+|+|++|+.+|++++++.+........      
T Consensus       299 ~~g~~~~a~~~~~~~L~~~~~~lg~~h~----~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp------  368 (429)
T 3qwp_A          299 AHWKWEQVLAMCQAIISSNSERLPDINI----YQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHP------  368 (429)
T ss_dssp             HTTCHHHHHHHHHHHHTCSSCCCCTTSH----HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCH------
T ss_pred             hhccHHHHHHHHHHHHHhccCcCCccch----HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCCh------
Confidence            44566666666666664433 3454444    456788999999999999999999999999999998887655      


Q ss_pred             hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh--hcCCCchhHHhhc
Q 020453          256 DVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL--TLKPEEAGLEQRC  304 (326)
Q Consensus       256 ~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l--~~~p~~~~~~~~~  304 (326)
                      +++.++++||.+|..+|++++|+.+|++|++|++..  ..||..+.+++++
T Consensus       369 ~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l  419 (429)
T 3qwp_A          369 VRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLL  419 (429)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence            789999999999999999999999999999999887  5566666666666

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=98.71  E-value=1.7e-09  Score=83.59  Aligned_cols=45  Identities=33%  Similarity=0.813  Sum_probs=39.4

Q ss_pred             cCCcccccccccccCCC-------eecccCCcchHHhHhcCCC----CCCCCccccc
Q 020453           21 IGPLSCMICQALLFECS-------KCTPCSHVYCKACISRFKD----CPLCGADIEK   66 (326)
Q Consensus        21 ~~~l~C~iC~~~l~~~p-------~~l~C~h~fC~~Cl~~~~~----CP~Cr~~~~~   66 (326)
                      .+.+.|+||++. +.+|       ++++|||+||..||.+|+.    ||.||..+..
T Consensus         5 ~~~~~C~IC~~~-~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~   60 (133)
T 4ap4_A            5 SGTVSCPICMDG-YSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH   60 (133)
T ss_dssp             CCSCBCTTTCCB-HHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTT
T ss_pred             CCCCCCcccChh-hhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCcc
Confidence            467999999999 4657       9999999999999999963    9999998873

>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.67  E-value=5.2e-09  Score=72.17  Aligned_cols=44  Identities=23%  Similarity=0.652  Sum_probs=36.6

Q ss_pred             CCcccccccccccCCCeec---ccCCcchHHhHhcCC----CCCCCCccccc
Q 020453           22 GPLSCMICQALLFECSKCT---PCSHVYCKACISRFK----DCPLCGADIEK   66 (326)
Q Consensus        22 ~~l~C~iC~~~l~~~p~~l---~C~h~fC~~Cl~~~~----~CP~Cr~~~~~   66 (326)
                      +...|+||++.+ ..+..+   +|+|.||..||..|+    .||.||..+..
T Consensus        14 ~~~~C~IC~~~~-~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~   64 (74)
T 2ep4_A           14 LHELCAVCLEDF-KPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQ   64 (74)
T ss_dssp             CSCBCSSSCCBC-CSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCSS
T ss_pred             CCCCCcCCCccc-CCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCccccc
Confidence            578999999994 545444   999999999999986    39999998764

>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.65  E-value=1.7e-08  Score=70.83  Aligned_cols=47  Identities=28%  Similarity=0.649  Sum_probs=37.3

Q ss_pred             CcccCCcccccccccccCC--------------Ceecc-cCCcchHHhHhcCCC----CCCCCcccc
Q 020453           18 SFKIGPLSCMICQALLFEC--------------SKCTP-CSHVYCKACISRFKD----CPLCGADIE   65 (326)
Q Consensus        18 ~~~~~~l~C~iC~~~l~~~--------------p~~l~-C~h~fC~~Cl~~~~~----CP~Cr~~~~   65 (326)
                      ....+...|+||++.| .+              ++.++ |+|.|+..||.+|+.    ||.||..+.
T Consensus        10 ~~~~~~~~C~IC~~~~-~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~   75 (81)
T 2ecl_A           10 SWDVECDTCAICRVQV-MDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWV   75 (81)
T ss_dssp             CCSCCCSCBTTTTBCT-TSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCC
T ss_pred             eecCCCCCCcccChhh-hccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcc
Confidence            3445678899999984 43              45555 999999999999974    999998865

>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1

Probab=98.63  E-value=7.4e-09  Score=77.83  Aligned_cols=44  Identities=27%  Similarity=0.635  Sum_probs=36.5

Q ss_pred             CCcccccccccccCCCe------------------ecccCCcchHHhHhcCC---------CCCCCCccccc
Q 020453           22 GPLSCMICQALLFECSK------------------CTPCSHVYCKACISRFK---------DCPLCGADIEK   66 (326)
Q Consensus        22 ~~l~C~iC~~~l~~~p~------------------~l~C~h~fC~~Cl~~~~---------~CP~Cr~~~~~   66 (326)
                      .+..|+||++.| ..|.                  .++|+|.||..||..|+         .||.||..+..
T Consensus        24 ~~~~C~ICl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~   94 (114)
T 1v87_A           24 PEEDCIICMEKL-AVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE   94 (114)
T ss_dssp             CSCEETTTTEET-TSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred             CCCcCccCChhh-cCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence            456899999995 4454                  78999999999999986         39999998763

>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B

Probab=98.61  E-value=1.2e-08  Score=91.11  Aligned_cols=44  Identities=25%  Similarity=0.742  Sum_probs=40.4

Q ss_pred             CCcccccccccccCCCeecccCCc-chHHhHhcCCCCCCCCccccc
Q 020453           22 GPLSCMICQALLFECSKCTPCSHV-YCKACISRFKDCPLCGADIEK   66 (326)
Q Consensus        22 ~~l~C~iC~~~l~~~p~~l~C~h~-fC~~Cl~~~~~CP~Cr~~~~~   66 (326)
                      +++.|+||++. +.+|+.+||||+ ||..|+..+..||.||..+..
T Consensus       294 ~~~~C~IC~~~-~~~~v~lpCgH~~fC~~C~~~~~~CP~CR~~i~~  338 (345)
T 3t6p_A          294 EERTCKVCMDK-EVSVVFIPCGHLVVCQECAPSLRKCPICRGIIKG  338 (345)
T ss_dssp             TTCBCTTTSSS-BCCEEEETTCCEEECTTTGGGCSBCTTTCCBCCE
T ss_pred             CCCCCCccCCc-CCceEEcCCCChhHhHHHHhcCCcCCCCCCCccC
Confidence            57899999999 577999999999 999999999899999998874

>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.58  E-value=5.6e-09  Score=75.59  Aligned_cols=60  Identities=18%  Similarity=0.667  Sum_probs=41.9

Q ss_pred             CCcccccccccccCCCeec---ccCCcchHHhHhcCC------------CCCC--CCcc--ccc-ccccHHHHHHHHHHH
Q 020453           22 GPLSCMICQALLFECSKCT---PCSHVYCKACISRFK------------DCPL--CGAD--IEK-IEADTTLQDVVDRFI   81 (326)
Q Consensus        22 ~~l~C~iC~~~l~~~p~~l---~C~h~fC~~Cl~~~~------------~CP~--Cr~~--~~~-~~~n~~l~~~~~~~~   81 (326)
                      +.++|+||++. +..|.++   +|||+||+.|+..+|            .||.  |+..  +.. .-.+....++++++.
T Consensus         4 ~~~~C~IC~~~-~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~~~i~~ll~~~~~~ky~   82 (94)
T 1wim_A            4 GSSGCKLCLGE-YPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQENEIECMVAAEIMQRYK   82 (94)
T ss_dssp             SBCCCSSSCCC-CBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECHHHHHHHSCHHHHHHHH
T ss_pred             CCcCCcccCcc-cccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCHHHHHHHCCHHHHHHHH
Confidence            57899999999 4657665   799999999997764            2999  9988  542 111222245555555


Q ss_pred             h
Q 020453           82 E   82 (326)
Q Consensus        82 ~   82 (326)
                      .
T Consensus        83 ~   83 (94)
T 1wim_A           83 K   83 (94)
T ss_dssp             H
T ss_pred             H
Confidence            4

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=98.56  E-value=1.5e-06  Score=74.16  Aligned_cols=150  Identities=17%  Similarity=0.187  Sum_probs=115.0

Q ss_pred             HHHHHHHHHHHHHhCCchhHhhHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHh
Q 020453          165 GAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAV  244 (326)
Q Consensus       165 ~~~l~~~C~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~  244 (326)
                      ...+..++.+....++...+..+.+.+.....+.....   ..........++.+....+++++|+..|++++++.++..
T Consensus        43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~  119 (283)
T 3edt_B           43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKD---HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVL  119 (283)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTT---CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCc---chHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHc
Confidence            34555566777788899999999888887665542211   123455778999999999999999999999999988765


Q ss_pred             hcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh--hcCCCchhHHhhccchhhhHHHHhHHhcCcc
Q 020453          245 KRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL--TLKPEEAGLEQRCWNSSTTNFQKNHLNQLPK  322 (326)
Q Consensus       245 ~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l--~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (326)
                      .....      ..+..+.++|.++..+|++++|+.++++++.+.+..  ..+|..+.+..++  +.++...|++.+++..
T Consensus       120 ~~~~~------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l--a~~~~~~g~~~~A~~~  191 (283)
T 3edt_B          120 GKFHP------DVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNL--ASCYLKQGKYQDAETL  191 (283)
T ss_dssp             CTTCH------HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHH--HHHHHHHTCHHHHHHH
T ss_pred             CCCCh------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH--HHHHHHcCCHHHHHHH
Confidence            54322      456788899999999999999999999999998876  3345555667777  7788888888887777


Q ss_pred             ccc
Q 020453          323 FRS  325 (326)
Q Consensus       323 ~~~  325 (326)
                      |++
T Consensus       192 ~~~  194 (283)
T 3edt_B          192 YKE  194 (283)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            654

>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A

Probab=98.54  E-value=9.7e-09  Score=68.53  Aligned_cols=45  Identities=27%  Similarity=0.609  Sum_probs=38.6

Q ss_pred             cCCcccccccccccCCCeec--ccCCc-chHHhHhcCCC----CCCCCccccc
Q 020453           21 IGPLSCMICQALLFECSKCT--PCSHV-YCKACISRFKD----CPLCGADIEK   66 (326)
Q Consensus        21 ~~~l~C~iC~~~l~~~p~~l--~C~h~-fC~~Cl~~~~~----CP~Cr~~~~~   66 (326)
                      .++..|+||++. +.+++.+  ||||. ||..|+..|+.    ||.||..+..
T Consensus         6 ~~~~~C~IC~~~-~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~   57 (64)
T 2vje_A            6 NAIEPCVICQGR-PKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQM   57 (64)
T ss_dssp             GGGSCCTTTSSS-CSCEEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCCE
T ss_pred             CCcCCCCcCCCC-CCCEEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchhc
Confidence            466789999999 5668877  99999 89999998864    9999998764

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=98.53  E-value=2.1e-06  Score=77.68  Aligned_cols=179  Identities=9%  Similarity=-0.028  Sum_probs=131.4

Q ss_pred             HHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhCCchhHhhHHHHHHHHHHhCCCChhHH
Q 020453          126 RAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEI  205 (326)
Q Consensus       126 ~~~~~~~~~~a~~~~~~c~~~l~~~l~~~~~~~~~C~~H~~~l~~~C~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~  205 (326)
                      ..+..|++++|...+..+....    ...+.    -+.....+..++.+....++...+......+.....+...    .
T Consensus       112 ~~~~~g~~~~A~~~~~~al~~~----~~~~~----~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~----~  179 (383)
T 3ulq_A          112 YELDQREYLSAIKFFKKAESKL----IFVKD----RIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEA----Y  179 (383)
T ss_dssp             HHHHTTCHHHHHHHHHHHHTTG----GGCCC----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCST----T
T ss_pred             HHHHhcCHHHHHHHHHHHHHHH----hhCCC----HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcc----c
Confidence            4566788888877665432110    00000    1122345556677777889999999999998888776643    2


Q ss_pred             HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 020453          206 IHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAI  285 (326)
Q Consensus       206 ~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~  285 (326)
                      ...+......+|.+...+|++++|+..|++++++.++...        ....+..+.++|.++..+|++++|+.++++++
T Consensus       180 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~--------~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al  251 (383)
T 3ulq_A          180 NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQ--------PQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAI  251 (383)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCC--------hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            3345678899999999999999999999999998775421        22467789999999999999999999999999


Q ss_pred             HHHHHhhcCCCchhHHhhccchhhhHHHHhHHhcCcccccC
Q 020453          286 KRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRSA  326 (326)
Q Consensus       286 ~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (326)
                      .+.+.....|..+....++  +..+..+|++.++..+|++|
T Consensus       252 ~~~~~~~~~~~~~~~~~~l--~~~~~~~g~~~~A~~~~~~a  290 (383)
T 3ulq_A          252 AVFEESNILPSLPQAYFLI--TQIHYKLGKIDKAHEYHSKG  290 (383)
T ss_dssp             HHHHHTTCGGGHHHHHHHH--HHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHhhccchhHHHHHHHH--HHHHHHCCCHHHHHHHHHHH
Confidence            9988764335556677777  78888888888887777653

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=98.52  E-value=1.5e-08  Score=78.26  Aligned_cols=57  Identities=30%  Similarity=0.698  Sum_probs=44.5

Q ss_pred             CCCCCCCCCCC-----cccCCcccccccccccCCC-------eecccCCcchHHhHhcCC----CCCCCCcccc
Q 020453            8 PKCPFGYDAQS-----FKIGPLSCMICQALLFECS-------KCTPCSHVYCKACISRFK----DCPLCGADIE   65 (326)
Q Consensus         8 ~~~~~~~~~~~-----~~~~~l~C~iC~~~l~~~p-------~~l~C~h~fC~~Cl~~~~----~CP~Cr~~~~   65 (326)
                      |.|+..+....     +..+.+.|+||++.+ .+|       +.++|||.||..||.+|+    .||.||..+.
T Consensus        52 P~Cr~~~~~~~l~~l~i~~~~~~C~iC~~~~-~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~  124 (133)
T 4ap4_A           52 PTCRKKINHKRYHPIYIGSGTVSCPICMDGY-SEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN  124 (133)
T ss_dssp             TTTCCBCTTTCEEECBCSSSSCBCTTTCCBH-HHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCC
T ss_pred             CCCCCcCccccccccccCCCCCCCCCCCCcc-ccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCC
Confidence            45555554443     244678999999984 546       899999999999999986    3999999876

>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*

Probab=98.50  E-value=1.9e-08  Score=66.86  Aligned_cols=44  Identities=25%  Similarity=0.602  Sum_probs=38.1

Q ss_pred             CCcccccccccccCCCeec--ccCCc-chHHhHhcCC----CCCCCCccccc
Q 020453           22 GPLSCMICQALLFECSKCT--PCSHV-YCKACISRFK----DCPLCGADIEK   66 (326)
Q Consensus        22 ~~l~C~iC~~~l~~~p~~l--~C~h~-fC~~Cl~~~~----~CP~Cr~~~~~   66 (326)
                      ....|+||++. ..+++.+  ||||. ||..|+..++    .||.||..+..
T Consensus         6 ~~~~C~IC~~~-~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~   56 (63)
T 2vje_B            6 LLKPCSLCEKR-PRDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQL   56 (63)
T ss_dssp             GGSBCTTTSSS-BSCEEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCCE
T ss_pred             cCCCCcccCCc-CCCeEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhhc
Confidence            45689999998 5668888  99998 9999999987    79999998764

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=98.46  E-value=7.8e-08  Score=89.14  Aligned_cols=109  Identities=13%  Similarity=0.024  Sum_probs=92.2

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 020453          209 LSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRL  288 (326)
Q Consensus       209 i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~  288 (326)
                      .....+.+..+. ..|++++|+..|++++++.++....+..      +.+.++++|+.+|..+|++++|+.++++++.+.
T Consensus       287 ~~~ll~~ie~~~-~~g~~~~a~~~~~~~L~~~~~~lg~~h~------~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~  359 (429)
T 3qwp_A          287 VQESLKKIEELK-AHWKWEQVLAMCQAIISSNSERLPDINI------YQLKVLDCAMDACINLGLLEEALFYGTRTMEPY  359 (429)
T ss_dssp             HHHHHHHHHHHH-HTTCHHHHHHHHHHHHTCSSCCCCTTSH------HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH-hhccHHHHHHHHHHHHHhccCcCCccch------HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhH
Confidence            445555666555 5679999999999999887665554432      689999999999999999999999999999999


Q ss_pred             HHh--hcCCCchhHHhhccchhhhHHHHhHHhcCcccccC
Q 020453          289 ESL--TLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRSA  326 (326)
Q Consensus       289 ~~l--~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (326)
                      +.+  ..+|+.+..+.++  +.++..+|++.+|++.|++|
T Consensus       360 ~~~lg~~Hp~~a~~l~nL--a~~~~~~g~~~eA~~~~~~A  397 (429)
T 3qwp_A          360 RIFFPGSHPVRGVQVMKV--GKLQLHQGMFPQAMKNLRLA  397 (429)
T ss_dssp             HHHSCSSCHHHHHHHHHH--HHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHcCCCChHHHHHHHHH--HHHHHhcCCHHHHHHHHHHH
Confidence            998  7788889999999  99999999999999988765

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=98.46  E-value=3.8e-06  Score=76.02  Aligned_cols=177  Identities=14%  Similarity=0.023  Sum_probs=128.4

Q ss_pred             HHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhCCchhHhhHHHHHHHHHHhCCCChhHH
Q 020453          126 RAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEI  205 (326)
Q Consensus       126 ~~~~~~~~~~a~~~~~~c~~~l~~~l~~~~~~~~~C~~H~~~l~~~C~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~  205 (326)
                      ..+..|++++|...+..+...       ..... --+.....+..++.+....++...+....+.+.....+...    .
T Consensus       110 ~~~~~g~~~~A~~~~~~al~~-------~~~~~-~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~----~  177 (378)
T 3q15_A          110 YEFDQKEYVEAIGYYREAEKE-------LPFVS-DDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPL----Y  177 (378)
T ss_dssp             HHHHTTCHHHHHHHHHHHHTT-------GGGCC-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTT----C
T ss_pred             HHHHHCCHHHHHHHHHHHHHH-------HhhCC-ChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCC----c
Confidence            455678888887766543211       00000 01233445566677777889999999999988887766543    1


Q ss_pred             HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 020453          206 IHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAI  285 (326)
Q Consensus       206 ~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~  285 (326)
                      ...+......+|.+....|++++|+..|.+++++.+....        ....+..+.++|.++..+|++++|+.++++++
T Consensus       178 ~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~--------~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al  249 (378)
T 3q15_A          178 SIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQN--------DRFIAISLLNIANSYDRSGDDQMAVEHFQKAA  249 (378)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            2345678889999999999999999999999998765321        11467789999999999999999999999999


Q ss_pred             HHHHHhhcCCCchhHHhhccchhhhHHHHhHHhcCccccc
Q 020453          286 KRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRS  325 (326)
Q Consensus       286 ~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (326)
                      .+.+... +|..+....++  +.++..+|+..++..+|++
T Consensus       250 ~~~~~~~-~~~~~~~~~~l--a~~~~~~g~~~~A~~~~~~  286 (378)
T 3q15_A          250 KVSREKV-PDLLPKVLFGL--SWTLCKAGQTQKAFQFIEE  286 (378)
T ss_dssp             HHHHHHC-GGGHHHHHHHH--HHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHhhC-ChhHHHHHHHH--HHHHHHCCCHHHHHHHHHH
Confidence            9988752 34445666677  7777778888888777665

>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*

Probab=98.43  E-value=4e-08  Score=88.26  Aligned_cols=42  Identities=31%  Similarity=0.872  Sum_probs=37.3

Q ss_pred             CcccccccccccCCCeecccCCcchHHhHhcCC-----CCCCCCcccc
Q 020453           23 PLSCMICQALLFECSKCTPCSHVYCKACISRFK-----DCPLCGADIE   65 (326)
Q Consensus        23 ~l~C~iC~~~l~~~p~~l~C~h~fC~~Cl~~~~-----~CP~Cr~~~~   65 (326)
                      ...|+||++. +.+|+.+||||.||..|+..|.     .||.||..+.
T Consensus       332 ~~~C~ICle~-~~~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~  378 (389)
T 2y1n_A          332 FQLCKICAEN-DKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIK  378 (389)
T ss_dssp             SSBCTTTSSS-BCCEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred             CCCCCccCcC-CCCeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccC
Confidence            3799999999 5779999999999999998773     4999999877

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.41  E-value=5.6e-06  Score=72.86  Aligned_cols=174  Identities=14%  Similarity=0.083  Sum_probs=114.9

Q ss_pred             hhhcCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhCCchhHhhHHHHHHHHHHhCCCChhHHHH
Q 020453          128 FRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIH  207 (326)
Q Consensus       128 ~~~~~~~~a~~~~~~c~~~l~~~l~~~~~~~~~C~~H~~~l~~~C~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~~~  207 (326)
                      ...|++++|...+..+-.....     ....   ......+...+.+....++...++..++.+.....+++.     ..
T Consensus        47 ~~~g~~~~A~~~~~~al~~~~~-----~~~~---~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~-----~~  113 (307)
T 2ifu_A           47 KNAKQLEQAKDAYLQEAEAHAN-----NRSL---FHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGT-----PD  113 (307)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHH-----TTCH---HHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTC-----HH
T ss_pred             HHcCCHHHHHHHHHHHHHHHHH-----cCCH---HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCC-----HH
Confidence            3467777777666543222110     0000   011234445556777788999999999999888766554     22


Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 020453          208 TLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR  287 (326)
Q Consensus       208 ~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~  287 (326)
                      .......+++.+... +++++|+.+|++++++......        ....+..+.++|.++..+|++++|+.+|++++.+
T Consensus       114 ~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~--------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  184 (307)
T 2ifu_A          114 TAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEER--------LRQAAELIGKASRLLVRQQKFDEAAASLQKEKSM  184 (307)
T ss_dssp             HHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCC--------hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            345677899999988 9999999999999998765211        1235678899999999999999999999999999


Q ss_pred             HHHhhcCCCchhHHhhccchhhhHHHHhHHhcCccccc
Q 020453          288 LESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRS  325 (326)
Q Consensus       288 ~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (326)
                      .......+..+....++  +..+..++++.++..+|++
T Consensus       185 ~~~~~~~~~~~~~~~~~--g~~~~~~g~~~~A~~~~~~  220 (307)
T 2ifu_A          185 YKEMENYPTCYKKCIAQ--VLVQLHRADYVAAQKCVRE  220 (307)
T ss_dssp             HHHTTCHHHHHHHHHHH--HHHHHHTTCHHHHHHHHHH
T ss_pred             HHHcCChhHHHHHHHHH--HHHHHHcCCHHHHHHHHHH
Confidence            87642211112233333  4444445666666666554

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.40  E-value=8.4e-06  Score=71.05  Aligned_cols=141  Identities=8%  Similarity=-0.085  Sum_probs=102.6

Q ss_pred             HHHHHHhCCchhHhhHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 020453          172 GDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVP  251 (326)
Q Consensus       172 C~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~  251 (326)
                      +......++...++...+.+........    .. ........+||.+...+|++++|+.+|++++++.+....      
T Consensus       122 ~~~~~~~~~~~~Ai~~~~~al~~~~~~~----~~-~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~------  190 (293)
T 3u3w_A          122 AAYVLKKVDYEYCILELKKLLNQQLTGI----DV-YQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHD------  190 (293)
T ss_dssp             HHHHTTSSCHHHHHHHHHHHHHTCCCCS----CT-THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSC------
T ss_pred             HHHHHcccCHHHHHHHHHHHHHHhcccc----cH-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccc------
Confidence            3444444566777777776665322211    11 123456789999999999999999999999987665311      


Q ss_pred             chhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHhhccchhhhHHHH-hHHhcCcccccC
Q 020453          252 SQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQK-NHLNQLPKFRSA  326 (326)
Q Consensus       252 ~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  326 (326)
                       .....+..+.++|.++..+|++++|++++++++.+.......+..+.+..++  +..+..+| .+.++..+|++|
T Consensus       191 -~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~l--g~~~~~~g~~~~~A~~~~~~A  263 (293)
T 3u3w_A          191 -NEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQR--GECLRKLEYEEAEIEDAYKKA  263 (293)
T ss_dssp             -CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHH--HHHHHHTTCCHHHHHHHHHHH
T ss_pred             -chhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHH--HHHHHHhCCcHHHHHHHHHHH
Confidence             1235677899999999999999999999999999988765455556677777  77777788 457777777654

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.38  E-value=5.6e-06  Score=64.05  Aligned_cols=144  Identities=15%  Similarity=0.146  Sum_probs=105.9

Q ss_pred             HHHHHHHHHHHhCCchhHhhHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhc
Q 020453          167 VLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKR  246 (326)
Q Consensus       167 ~l~~~C~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~  246 (326)
                      .+...+.+....++...++...+.+.........     ...+......++.+....+++++|+..|++++++...... 
T Consensus        11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~-   84 (164)
T 3ro3_A           11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD-----KAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKD-   84 (164)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC-----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCC-----chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC-
Confidence            3444556666778888888888888877655433     2334567788999999999999999999999988765311 


Q ss_pred             CCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHhhccchhhhHHHHhHHhcCccccc
Q 020453          247 HSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRS  325 (326)
Q Consensus       247 ~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (326)
                             ....+..+.++|.++..+|++++|++++++++.+.+.....+..+.....+  +..+...|++.++..+|++
T Consensus        85 -------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l--a~~~~~~g~~~~A~~~~~~  154 (164)
T 3ro3_A           85 -------RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSL--GNAYTALGNHDQAMHFAEK  154 (164)
T ss_dssp             -------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH--HHHHHHHTCHHHHHHHHHH
T ss_pred             -------cHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHH--HHHHHHccCHHHHHHHHHH
Confidence                   123466788999999999999999999999999987753223334455556  6677777777777766654

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=98.38  E-value=1.3e-05  Score=69.27  Aligned_cols=184  Identities=17%  Similarity=0.167  Sum_probs=128.8

Q ss_pred             HHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhCCchhHhhHHHHHHHHHHhCCCChhH
Q 020453          125 MRAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLE  204 (326)
Q Consensus       125 ~~~~~~~~~~~a~~~~~~c~~~l~~~l~~~~~~~~~C~~H~~~l~~~C~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~  204 (326)
                      ...+..|++++|...+..+-........  ..    -+.....+..++.+....++...+..+.+.+.....+.....  
T Consensus        35 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~--~~----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--  106 (311)
T 3nf1_A           35 IQYASQGRYEVAVPLCKQALEDLEKTSG--HD----HPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD--  106 (311)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHHHC--SS----SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT--
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHHcC--CC----CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC--
Confidence            3566788999988877654332221110  00    122233445566777778888999988888876655431111  


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 020453          205 IIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEA  284 (326)
Q Consensus       205 ~~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~  284 (326)
                       ..........++.+....+++++|+..|++++++.+........      ..+..+.++|.++..+|++++|+++++++
T Consensus       107 -~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~------~~~~~~~~la~~~~~~~~~~~A~~~~~~a  179 (311)
T 3nf1_A          107 -HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHP------DVAKQLNNLALLCQNQGKYEEVEYYYQRA  179 (311)
T ss_dssp             -CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCH------HHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             -ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCCh------HHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence             12345567889999999999999999999999988776443322      45677889999999999999999999999


Q ss_pred             HHHHHHh--hcCCCchhHHhhccchhhhHHHHhHHhcCccccc
Q 020453          285 IKRLESL--TLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRS  325 (326)
Q Consensus       285 ~~~~~~l--~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (326)
                      +.+.+..  ..+|....+...+  +.++..+|++.++...|++
T Consensus       180 ~~~~~~~~~~~~~~~~~~~~~l--a~~~~~~g~~~~A~~~~~~  220 (311)
T 3nf1_A          180 LEIYQTKLGPDDPNVAKTKNNL--ASCYLKQGKFKQAETLYKE  220 (311)
T ss_dssp             HHHHHHTSCTTCHHHHHHHHHH--HHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHhCCCCHHHHHHHHHH--HHHHHHcCCHHHHHHHHHH
Confidence            9998876  3344445566666  7777778888887777654

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=98.36  E-value=2.6e-06  Score=74.49  Aligned_cols=137  Identities=9%  Similarity=-0.003  Sum_probs=102.6

Q ss_pred             HHHHhCCchhHhhHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCch
Q 020453          174 CCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQ  253 (326)
Q Consensus       174 ~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~  253 (326)
                      +....++...+...+..+.....+++.     .........+++.+...+|++++|+..|++++++..+...        
T Consensus        46 ~~~~~g~~~~A~~~~~~al~~~~~~~~-----~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~--------  112 (292)
T 1qqe_A           46 IYRLRKELNLAGDSFLKAADYQKKAGN-----EDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQ--------  112 (292)
T ss_dssp             HHHHTTCTHHHHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--------
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHHHhCC-----HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCC--------
Confidence            345678889999999888887776653     2334567789999999999999999999999998765311        


Q ss_pred             hhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHhhcCCCchhHHhhccchhhhHHHHhHHhcCccccc
Q 020453          254 VLDVAVSLAKVADVDRSI-GNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRS  325 (326)
Q Consensus       254 ~~~la~~l~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (326)
                      ....+..+.++|.++... |++++|+..|++++.+..........+.+..++  +.++..+|++.+++..|++
T Consensus       113 ~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l--g~~~~~~g~~~~A~~~~~~  183 (292)
T 1qqe_A          113 FRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKC--ADLKALDGQYIEASDIYSK  183 (292)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH--HHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHH--HHHHHHhCCHHHHHHHHHH
Confidence            224577899999999996 999999999999999987532111123355566  6677777777777766654

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.36  E-value=1.9e-06  Score=75.96  Aligned_cols=137  Identities=12%  Similarity=0.040  Sum_probs=104.7

Q ss_pred             HHHHHhCCchhHhhHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCc
Q 020453          173 DCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPS  252 (326)
Q Consensus       173 ~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~  252 (326)
                      .+....++...+...+..+.+...+++.     .........+++.+...++++++|+..|++++++.++..        
T Consensus        44 ~~~~~~g~~~~A~~~~~~al~~~~~~~~-----~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g--------  110 (307)
T 2ifu_A           44 VAFKNAKQLEQAKDAYLQEAEAHANNRS-----LFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENG--------  110 (307)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTT--------
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcC--------
Confidence            4455678888888888888887776654     234456778999999999999999999999999865421        


Q ss_pred             hhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHhhccchhhhHHHHhHHhcCccccc
Q 020453          253 QVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRS  325 (326)
Q Consensus       253 ~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (326)
                      .....+..+.++|.++.. |++++|+++|++++.+..........+.+..++  +.++..+|++.+++.+|++
T Consensus       111 ~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l--g~~~~~~g~~~~A~~~~~~  180 (307)
T 2ifu_A          111 TPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKA--SRLLVRQQKFDEAAASLQK  180 (307)
T ss_dssp             CHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH--HHHHHHTTCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHH--HHHHHHcCCHHHHHHHHHH
Confidence            122457789999999999 999999999999999987642212224466677  7777778888888777765

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.35  E-value=6.5e-06  Score=66.87  Aligned_cols=146  Identities=17%  Similarity=0.126  Sum_probs=106.8

Q ss_pred             HHHHHHHHHHHHhCCchhHhhHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhh
Q 020453          166 AVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVK  245 (326)
Q Consensus       166 ~~l~~~C~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~  245 (326)
                      ..+...+.+....++...+....+.+......++.     .........+++.+....|++++|+..|++++++.+....
T Consensus        27 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~  101 (203)
T 3gw4_A           27 GARFMLGYVYAFMDRFDEARASFQALQQQAQKSGD-----HTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPE  101 (203)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCC-----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCC-----cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCc
Confidence            44555667777788899999999888887776654     3344567789999999999999999999999998764211


Q ss_pred             cCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHhhccchhhhHHHHhHHhcCccccc
Q 020453          246 RHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRS  325 (326)
Q Consensus       246 ~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (326)
                       .      ....+..+.++|.++..+|++++|+.++++++.+.+........+....++  +.++...|+..++..+|++
T Consensus       102 -~------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l--a~~~~~~g~~~~A~~~~~~  172 (203)
T 3gw4_A          102 -D------PLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGL--GDLAQQEKNLLEAQQHWLR  172 (203)
T ss_dssp             -C------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH--HHHHHHTTCHHHHHHHHHH
T ss_pred             -c------HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHH--HHHHHHCcCHHHHHHHHHH
Confidence             1      123567788999999999999999999999999887642211223344555  6666666777776666554

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=98.32  E-value=1.8e-06  Score=65.71  Aligned_cols=103  Identities=13%  Similarity=0.059  Sum_probs=76.8

Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 020453          207 HTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIK  286 (326)
Q Consensus       207 ~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~  286 (326)
                      ...+.+.+++|......|++++|+..|.+++++       .+.+       +..+.++|.++..+|++++|++.++++++
T Consensus         5 ~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~-------~p~~-------~~~~~nlg~~~~~~~~~~~A~~~~~~al~   70 (127)
T 4gcn_A            5 TDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIEL-------DPSN-------ITFYNNKAAVYFEEKKFAECVQFCEKAVE   70 (127)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCCC-------HHHHHhHHHHHHHhhhHHHHHHHHHHHHH
Confidence            345667889999999999999999999999876       2322       46788999999999999999999999998


Q ss_pred             HHHHh-hcCCCchhHHhhccchhhhHHHHhHHhcCccccc
Q 020453          287 RLESL-TLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRS  325 (326)
Q Consensus       287 ~~~~l-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (326)
                      +-... ...+..+.+..++  +..+..++++.+++.+|++
T Consensus        71 ~~~~~~~~~~~~a~~~~~l--g~~~~~~~~~~~A~~~~~k  108 (127)
T 4gcn_A           71 VGRETRADYKLIAKAMSRA--GNAFQKQNDLSLAVQWFHR  108 (127)
T ss_dssp             HHHHTTCCHHHHHHHHHHH--HHHHHHTTCHHHHHHHHHH
T ss_pred             hCcccchhhHHHHHHHHHH--HHHHHHcCCHHHHHHHHHH
Confidence            87543 1111113344455  6666666677777666654

>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A

Probab=98.28  E-value=2.6e-07  Score=68.01  Aligned_cols=44  Identities=32%  Similarity=0.602  Sum_probs=36.0

Q ss_pred             cCCcccccccccccCCC------------------eecccCCcchHHhHhcCCC----CCCCCcccc
Q 020453           21 IGPLSCMICQALLFECS------------------KCTPCSHVYCKACISRFKD----CPLCGADIE   65 (326)
Q Consensus        21 ~~~l~C~iC~~~l~~~p------------------~~l~C~h~fC~~Cl~~~~~----CP~Cr~~~~   65 (326)
                      .+.-.|+||++.| ..+                  +.++|+|.|+..||..|..    ||.||..+.
T Consensus        35 ~~~d~CaIC~~~~-~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~  100 (106)
T 3dpl_R           35 IVVDNCAICRNHI-MDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE  100 (106)
T ss_dssp             SCSCCCSSSCSCT-TSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred             CCCCCCccCChhH-hCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCcce
Confidence            3567899999984 534                  4589999999999999853    999998754

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=98.27  E-value=1.9e-05  Score=68.94  Aligned_cols=172  Identities=11%  Similarity=0.047  Sum_probs=112.4

Q ss_pred             hhhcCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhCCchhHhhHHHHHHHHHHhCCCChhHHHH
Q 020453          128 FRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIH  207 (326)
Q Consensus       128 ~~~~~~~~a~~~~~~c~~~l~~~l~~~~~~~~~C~~H~~~l~~~C~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~~~  207 (326)
                      ...|++++|...+..+-.....     ....   ......+...+.+....++...++..++.+.......+.     ..
T Consensus        48 ~~~g~~~~A~~~~~~al~~~~~-----~~~~---~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~-----~~  114 (292)
T 1qqe_A           48 RLRKELNLAGDSFLKAADYQKK-----AGNE---DEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQ-----FR  114 (292)
T ss_dssp             HHTTCTHHHHHHHHHHHHHHHH-----TTCH---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-----HH
T ss_pred             HHcCCHHHHHHHHHHHHHHHHH-----hCCH---HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCC-----HH
Confidence            3467777777766544221110     0000   111234455667777888999999999988888766554     22


Q ss_pred             HHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 020453          208 TLSVSLNKIGDLKYYG-GDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIK  286 (326)
Q Consensus       208 ~i~~~~~~l~~l~~~~-~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~  286 (326)
                      .......+++.+.... +++++|+..|++++++......        ....+..+.++|.++..+|++++|+..|++++.
T Consensus       115 ~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~--------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~  186 (292)
T 1qqe_A          115 RGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQS--------VALSNKCFIKCADLKALDGQYIEASDIYSKLIK  186 (292)
T ss_dssp             HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCC--------hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            3456778999999995 9999999999999998764211        113356788999999999999999999998876


Q ss_pred             HHHHhhcCCCc----hhHHhhccchhhhHHHHhHHhcCccccc
Q 020453          287 RLESLTLKPEE----AGLEQRCWNSSTTNFQKNHLNQLPKFRS  325 (326)
Q Consensus       287 ~~~~l~~~p~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (326)
                      +...   .+..    .....++  +.++..+|++.++..+|++
T Consensus       187 ~~~~---~~~~~~~~~~~~~~l--g~~~~~~g~~~~A~~~~~~  224 (292)
T 1qqe_A          187 SSMG---NRLSQWSLKDYFLKK--GLCQLAATDAVAAARTLQE  224 (292)
T ss_dssp             TTSS---CTTTGGGHHHHHHHH--HHHHHHTTCHHHHHHHHHG
T ss_pred             HHhc---CCcccHHHHHHHHHH--HHHHHHcCCHHHHHHHHHH
Confidence            5321   1111    1133344  5555556666666666554

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=98.26  E-value=2.6e-06  Score=84.02  Aligned_cols=132  Identities=17%  Similarity=0.260  Sum_probs=76.3

Q ss_pred             HHHHHHHHHHHHHHHHHHhCCchhHhhHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 020453          160 LCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNV  239 (326)
Q Consensus       160 ~C~~H~~~l~~~C~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~  239 (326)
                      .||.|.+.+..++.+....|+..+++..++.+.+..    +..       ..+..+++.+...+|++++|+..|++++++
T Consensus         4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~----P~~-------~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l   72 (723)
T 4gyw_A            4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVF----PEF-------AAAHSNLASVLQQQGKLQEALMHYKEAIRI   72 (723)
T ss_dssp             --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----SCC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            578888888888888888888888887777666442    222       234566777777777777777777777654


Q ss_pred             HHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHhhccchhhhHHHHhHHhc
Q 020453          240 RRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQ  319 (326)
Q Consensus       240 ~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~  319 (326)
                      .       +.       .+..+.++|.++..+|++++|++.|++++++      +|+.+....++  +.++..+|++.++
T Consensus        73 ~-------P~-------~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l------~P~~~~a~~~L--g~~~~~~g~~~eA  130 (723)
T 4gyw_A           73 S-------PT-------FADAYSNMGNTLKEMQDVQGALQCYTRAIQI------NPAFADAHSNL--ASIHKDSGNIPEA  130 (723)
T ss_dssp             C-------TT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHH--HHHHHHTTCHHHH
T ss_pred             C-------CC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHH--HHHHHHcCCHHHH
Confidence            2       11       1334455555555555555555555544432      34444444444  4444444444444


Q ss_pred             Ccccc
Q 020453          320 LPKFR  324 (326)
Q Consensus       320 ~~~~~  324 (326)
                      +..|+
T Consensus       131 i~~~~  135 (723)
T 4gyw_A          131 IASYR  135 (723)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            44443

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=98.26  E-value=2.8e-06  Score=72.41  Aligned_cols=138  Identities=17%  Similarity=0.116  Sum_probs=106.0

Q ss_pred             HhCCchhHhhHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhh
Q 020453          177 AMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLD  256 (326)
Q Consensus       177 ~~h~~H~~~~~~e~~~~~~~~L~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~  256 (326)
                      ..++.+.++.+++.+.+...++....   ..........++.+....+++++|+..|++++++.++.......      .
T Consensus        13 ~~~~~~~A~~~~~~al~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~------~   83 (283)
T 3edt_B           13 GLVPRGSAVPLCKQALEDLEKTSGHD---HPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHP------A   83 (283)
T ss_dssp             CCSCSSSHHHHHHHHHHHHHHHHCSS---SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCH------H
T ss_pred             CCCCHHHHHHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcch------H
Confidence            34677889999998887766543322   12345577889999999999999999999999998776543322      4


Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh--hcCCCchhHHhhccchhhhHHHHhHHhcCccccc
Q 020453          257 VAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL--TLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRS  325 (326)
Q Consensus       257 la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l--~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (326)
                      .+..+.++|.++..+|++++|+++|++++.+.++.  ..+|.......++  +..+..++++.+++.+|++
T Consensus        84 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l--a~~~~~~g~~~~A~~~~~~  152 (283)
T 3edt_B           84 VAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNL--ALLCQNQGKAEEVEYYYRR  152 (283)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH--HHHHHTTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHH--HHHHHHcCCHHHHHHHHHH
Confidence            67788999999999999999999999999999887  3245555666667  7777777777777776654

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=98.20  E-value=6.4e-06  Score=74.52  Aligned_cols=140  Identities=13%  Similarity=0.054  Sum_probs=108.3

Q ss_pred             HHHHHhCCchhHhhHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCc
Q 020453          173 DCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPS  252 (326)
Q Consensus       173 ~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~  252 (326)
                      ......++...+....+.+......+..     ..........++.+....+++++|+.+|.+++++.+....       
T Consensus       111 ~~~~~~g~~~~A~~~~~~al~~~~~~~~-----~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~-------  178 (383)
T 3ulq_A          111 MYELDQREYLSAIKFFKKAESKLIFVKD-----RIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEA-------  178 (383)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHTTGGGCCC-----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCST-------
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHhhCCC-----HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcc-------
Confidence            5555668888888888877766555433     2334667889999999999999999999999998765311       


Q ss_pred             hhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHhhccchhhhHHHHhHHhcCcccccC
Q 020453          253 QVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRSA  326 (326)
Q Consensus       253 ~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (326)
                      .....+..+.++|.++..+|++++|+++|++++.+.+.....+..+.+..++  +.++..+|++.+++.+|++|
T Consensus       179 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l--g~~y~~~g~~~~A~~~~~~a  250 (383)
T 3ulq_A          179 YNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNI--GLCKNSQSQYEDAIPYFKRA  250 (383)
T ss_dssp             THHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH--HHHHHHTTCHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHH--HHHHHHCCCHHHHHHHHHHH
Confidence            1235678899999999999999999999999999998764333445567777  88888888888888777653

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=98.19  E-value=7.7e-06  Score=73.93  Aligned_cols=140  Identities=11%  Similarity=0.005  Sum_probs=109.0

Q ss_pred             HHHHHhCCchhHhhHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCc
Q 020453          173 DCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPS  252 (326)
Q Consensus       173 ~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~  252 (326)
                      ......++...+...++.+......+..     .........+++.+....+++++|+.+|.+++++.+....       
T Consensus       109 ~~~~~~g~~~~A~~~~~~al~~~~~~~~-----~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-------  176 (378)
T 3q15_A          109 MYEFDQKEYVEAIGYYREAEKELPFVSD-----DIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPL-------  176 (378)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHTTGGGCCC-----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTT-------
T ss_pred             HHHHHHCCHHHHHHHHHHHHHHHhhCCC-----hHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCC-------
Confidence            4455678888888888887766555543     2445677889999999999999999999999988764221       


Q ss_pred             hhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHhhccchhhhHHHHhHHhcCcccccC
Q 020453          253 QVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRSA  326 (326)
Q Consensus       253 ~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (326)
                      .....+..+.++|.++..+|++++|+++|++++.+.+.....+..+.+..++  +.++..+|++.+++.+|++|
T Consensus       177 ~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l--g~~y~~~~~~~~A~~~~~~a  248 (378)
T 3q15_A          177 YSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNI--ANSYDRSGDDQMAVEHFQKA  248 (378)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH--HHHHHHHTCHHHHHHHHHHH
T ss_pred             chhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH--HHHHHHCCCHHHHHHHHHHH
Confidence            1124678899999999999999999999999999998763333345577778  88888888888888887653

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=98.19  E-value=3e-05  Score=70.25  Aligned_cols=175  Identities=16%  Similarity=0.168  Sum_probs=124.5

Q ss_pred             HHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhCCchhHhhHHHHHHHHHHhCCCChhHH
Q 020453          126 RAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEI  205 (326)
Q Consensus       126 ~~~~~~~~~~a~~~~~~c~~~l~~~l~~~~~~~~~C~~H~~~l~~~C~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~  205 (326)
                      ..+..|++++|...+...-       ...+....   .....+..++.+....++...+..+++.+......+..     
T Consensus        57 ~~~~~g~~~~A~~~~~~al-------~~~~~~~~---~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~-----  121 (411)
T 4a1s_A           57 RLCNAGDCRAGVAFFQAAI-------QAGTEDLR---TLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMND-----  121 (411)
T ss_dssp             HHHHTTCHHHHHHHHHHHH-------HHCCSCHH---HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC-----
T ss_pred             HHHHhCcHHHHHHHHHHHH-------HhcccChh---HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccC-----
Confidence            5677888888887775432       21222110   11234455667777788999999999888877666543     


Q ss_pred             HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCC------------
Q 020453          206 IHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGN------------  273 (326)
Q Consensus       206 ~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~------------  273 (326)
                      ..........++.+....|++++|+..|++++++.+....        ....+..+.++|.++..+|+            
T Consensus       122 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~  193 (411)
T 4a1s_A          122 RLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGD--------RLSEGRALYNLGNVYHAKGKHLGQRNPGKFGD  193 (411)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC--------HHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCH
T ss_pred             chHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhc--------hHHHHHHHHHHHHHHHHcCcccccccchhhhh
Confidence            3445567788999999999999999999999998776422        12457788899999999999            


Q ss_pred             -----HHHHHHHHHHHHHHHHHhhcCCCchhHHhhccchhhhHHHHhHHhcCccccc
Q 020453          274 -----EDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRS  325 (326)
Q Consensus       274 -----~~~a~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (326)
                           +++|++++++++.+.+.....+..+.+..++  +..+...+++.+++.+|++
T Consensus       194 ~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l--a~~~~~~g~~~~A~~~~~~  248 (411)
T 4a1s_A          194 DVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNL--GNTYYLLGDFQAAIEHHQE  248 (411)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH--HHHHHHTTCHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH--HHHHHHcCChHHHHHHHHH
Confidence                 9999999999998887763334444455556  6666677777777666654

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=98.17  E-value=8.1e-06  Score=64.47  Aligned_cols=113  Identities=12%  Similarity=0.087  Sum_probs=88.7

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 020453          210 SVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLE  289 (326)
Q Consensus       210 ~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~  289 (326)
                      +....+.|......|+|++|+..|.+++++.-.....+..+  .....+....++|.++..+|++++|+..|+++++++.
T Consensus        11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~--~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n   88 (159)
T 2hr2_A           11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFD--HAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFN   88 (159)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCC--HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhh--hccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhh
Confidence            45567888899999999999999999999865421111001  1111244788999999999999999999999999977


Q ss_pred             Hh-hcCCCchhHH----hhccchhhhHHHHhHHhcCcccccC
Q 020453          290 SL-TLKPEEAGLE----QRCWNSSTTNFQKNHLNQLPKFRSA  326 (326)
Q Consensus       290 ~l-~~~p~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~  326 (326)
                      +- ..+|+.+...    .+.  +..+..++++..++..|++|
T Consensus        89 ~~~e~~pd~~~A~~~~~~~r--G~aL~~lgr~eEAl~~y~kA  128 (159)
T 2hr2_A           89 RRGELNQDEGKLWISAVYSR--ALALDGLGRGAEAMPEFKKV  128 (159)
T ss_dssp             HHCCTTSTHHHHHHHHHHHH--HHHHHHTTCHHHHHHHHHHH
T ss_pred             ccccCCCchHHHHHHHHHhH--HHHHHHCCCHHHHHHHHHHH
Confidence            76 7788887777    778  88999999999999888764

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.16  E-value=3.1e-05  Score=67.38  Aligned_cols=140  Identities=7%  Similarity=-0.108  Sum_probs=94.1

Q ss_pred             HHHHHHhCCchhHhhHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 020453          172 GDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVP  251 (326)
Q Consensus       172 C~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~  251 (326)
                      +......++...+....+.+.........     .........++|.+....+++++|+.+|++++++.+...    ...
T Consensus       122 ~~~~~~~~~~~~A~~~~~~al~~~~~~~~-----~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~----~~~  192 (293)
T 2qfc_A          122 AAYVLKKVDYEYCILELKKLLNQQLTGID-----VYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALH----DNE  192 (293)
T ss_dssp             HHHHHTSSCHHHHHHHHHHHHTTCCCSSC-----TTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC----CCH
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHHhcCCc-----hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcC----ccc
Confidence            34444456677777666655543222111     112355788999999999999999999999998866422    110


Q ss_pred             chhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHhhccchhhhHHHHhHHhc-Cccccc
Q 020453          252 SQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQ-LPKFRS  325 (326)
Q Consensus       252 ~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  325 (326)
                         ...+..+.++|.++..+|++++|++++++++.+..........+.+..++  +..+..+|++.++ ..+|++
T Consensus       193 ---~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~l--g~~y~~~g~~~~Ai~~~~~~  262 (293)
T 2qfc_A          193 ---EFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQR--GECLRKLEYEEAEIEDAYKK  262 (293)
T ss_dssp             ---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHH--HHHHHHTTCCHHHHHHHHHH
T ss_pred             ---cchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH--HHHHHHcCCcHHHHHHHHHH
Confidence               01236788999999999999999999999999986543333334555566  6666666666666 444443

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=98.14  E-value=4.9e-05  Score=68.32  Aligned_cols=175  Identities=15%  Similarity=0.172  Sum_probs=125.2

Q ss_pred             HHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhCCchhHhhHHHHHHHHHHhCCCChhHH
Q 020453          126 RAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEI  205 (326)
Q Consensus       126 ~~~~~~~~~~a~~~~~~c~~~l~~~l~~~~~~~~~C~~H~~~l~~~C~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~  205 (326)
                      ..+..|++++|...+...-       ...+....   .....+..++.+....++...+....+.+......+..     
T Consensus        18 ~~~~~g~~~~A~~~~~~al-------~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-----   82 (406)
T 3sf4_A           18 RLCKSGDCRAGVSFFEAAV-------QVGTEDLK---TLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGD-----   82 (406)
T ss_dssp             HHHHTTCHHHHHHHHHHHH-------HHCCSCHH---HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-----
T ss_pred             HHHHhccHHHHHHHHHHHH-------hcCcccHH---HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccc-----
Confidence            5677888888888775432       21222211   11234445566777788889999998888877666543     


Q ss_pred             HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCC------------
Q 020453          206 IHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGN------------  273 (326)
Q Consensus       206 ~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~------------  273 (326)
                      ..........++.+....|++++|+..|.+++++.......        ...+..+.++|.++..+|+            
T Consensus        83 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~--------~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~  154 (406)
T 3sf4_A           83 QLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDK--------VGEARALYNLGNVYHAKGKSFGCPGPQDVGE  154 (406)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH--------HHHHHHHHHHHHHHHHHHHTCC-------CC
T ss_pred             cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccc--------cchHHHHHHHHHHHHHcCCcccccccchhhh
Confidence            23445677889999999999999999999999987764321        2457788899999999999            


Q ss_pred             --------HHHHHHHHHHHHHHHHHhhcCCCchhHHhhccchhhhHHHHhHHhcCccccc
Q 020453          274 --------EDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRS  325 (326)
Q Consensus       274 --------~~~a~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (326)
                              +++|+.++++++.+.+.....+..+.+..++  +.++..+|++.+++..|++
T Consensus       155 ~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l--a~~~~~~g~~~~A~~~~~~  212 (406)
T 3sf4_A          155 FPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNL--GNTHYLLGNFRDAVIAHEQ  212 (406)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH--HHHHHHHTBHHHHHHHHHH
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHH--HHHHHHccCHHHHHHHHHH
Confidence                    9999999999999887764334444566666  7777777777777766654

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=98.13  E-value=2.1e-05  Score=68.03  Aligned_cols=150  Identities=17%  Similarity=0.076  Sum_probs=109.9

Q ss_pred             HHHHHHHHHHHHHhCCchhHhhHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHh
Q 020453          165 GAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAV  244 (326)
Q Consensus       165 ~~~l~~~C~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~  244 (326)
                      ...+...+.+....++...+..+.+.+.....+.....   ..........++.+....+++++|+..|++++++.+...
T Consensus        27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  103 (311)
T 3nf1_A           27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHD---HPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTL  103 (311)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSS---SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCC---CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHh
Confidence            34455566666778888999988888887655443111   223355678899999999999999999999999887765


Q ss_pred             hcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh--hcCCCchhHHhhccchhhhHHHHhHHhcCcc
Q 020453          245 KRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL--TLKPEEAGLEQRCWNSSTTNFQKNHLNQLPK  322 (326)
Q Consensus       245 ~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l--~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (326)
                      .....      ..+..+.++|.++..+|++++|+.++++++.+.+..  ..+|....+..++  +.++...+++.+++..
T Consensus       104 ~~~~~------~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--a~~~~~~~~~~~A~~~  175 (311)
T 3nf1_A          104 GKDHP------AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNL--ALLCQNQGKYEEVEYY  175 (311)
T ss_dssp             CTTCH------HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH--HHHHHTTTCHHHHHHH
T ss_pred             CCCCh------HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHH--HHHHHHcCCHHHHHHH
Confidence            43322      456788899999999999999999999999998876  3344445555556  6666666666666666


Q ss_pred             ccc
Q 020453          323 FRS  325 (326)
Q Consensus       323 ~~~  325 (326)
                      |++
T Consensus       176 ~~~  178 (311)
T 3nf1_A          176 YQR  178 (311)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            543

>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A

Probab=98.09  E-value=5e-07  Score=59.36  Aligned_cols=42  Identities=10%  Similarity=0.262  Sum_probs=37.1

Q ss_pred             CcccccccccccCCCeec-ccCCcchHHhHhcCCC----CCCCCcccc
Q 020453           23 PLSCMICQALLFECSKCT-PCSHVYCKACISRFKD----CPLCGADIE   65 (326)
Q Consensus        23 ~l~C~iC~~~l~~~p~~l-~C~h~fC~~Cl~~~~~----CP~Cr~~~~   65 (326)
                      .+.|||++++ ..+|+.+ ++||+|++.||++|+.    ||..+..+.
T Consensus         3 ~~~CpIs~~~-m~dPV~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~   49 (61)
T 2bay_A            3 HMLCAISGKV-PRRPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLS   49 (61)
T ss_dssp             -CCCTTTCSC-CSSEEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCC
T ss_pred             eEEecCCCCC-CCCCEEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCC
Confidence            4789999999 5779999 9999999999999963    999998876

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=98.07  E-value=1.6e-05  Score=60.20  Aligned_cols=99  Identities=13%  Similarity=0.078  Sum_probs=76.4

Q ss_pred             HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 020453          205 IIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEA  284 (326)
Q Consensus       205 ~~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~  284 (326)
                      +....++..++.|......|++++|+..|++++++       .+.+       ...+.++|.++..+|++++|++.++++
T Consensus         8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~-------~p~~-------~~~~~~~~~~~~~~~~~~~A~~~~~~a   73 (126)
T 4gco_A            8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR-------DPEN-------AILYSNRAACLTKLMEFQRALDDCDTC   73 (126)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCCC-------HHHHHHHhhHHHhhccHHHHHHHHHHH
Confidence            44566778889999999999999999999998765       2222       456778899999999999999888877


Q ss_pred             HHHHHHhhcCCCchhHHhhccchhhhHHHHhHHhcCccccc
Q 020453          285 IKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRS  325 (326)
Q Consensus       285 ~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (326)
                      +++      +|..+....++  +.++..+|++.+++..|++
T Consensus        74 l~~------~p~~~~a~~~l--g~~~~~~~~~~~A~~~~~~  106 (126)
T 4gco_A           74 IRL------DSKFIKGYIRK--AACLVAMREWSKAQRAYED  106 (126)
T ss_dssp             HHH------CTTCHHHHHHH--HHHHHHTTCHHHHHHHHHH
T ss_pred             HHh------hhhhhHHHHHH--HHHHHHCCCHHHHHHHHHH
Confidence            654      56666666667  7777778888877777664

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=98.06  E-value=1.8e-05  Score=78.07  Aligned_cols=152  Identities=15%  Similarity=0.204  Sum_probs=110.4

Q ss_pred             HHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhCCchhHhhHHHHHHHHHHhCCCChhHH
Q 020453          126 RAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEI  205 (326)
Q Consensus       126 ~~~~~~~~~~a~~~~~~c~~~l~~~l~~~~~~~~~C~~H~~~l~~~C~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~  205 (326)
                      ....+|++++|...+..+       +..       -|.+...+..++.+....++..+++..++.+.+.    .+..   
T Consensus        18 ~~~~~G~~~eAi~~~~kA-------l~l-------~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l----~P~~---   76 (723)
T 4gyw_A           18 IKREQGNIEEAVRLYRKA-------LEV-------FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI----SPTF---   76 (723)
T ss_dssp             HHHHTTCHHHHHHHHHHH-------HHH-------CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTC---
T ss_pred             HHHHcCCHHHHHHHHHHH-------HHh-------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCC---
Confidence            456789999998877643       222       2333455666777777889988888887776654    2322   


Q ss_pred             HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 020453          206 IHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAI  285 (326)
Q Consensus       206 ~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~  285 (326)
                          ..+..+++.+...++++++|+..|++++++       .+.       .+..+.++|.++..+|++++|++.|++++
T Consensus        77 ----~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l-------~P~-------~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al  138 (723)
T 4gyw_A           77 ----ADAYSNMGNTLKEMQDVQGALQCYTRAIQI-------NPA-------FADAHSNLASIHKDSGNIPEAIASYRTAL  138 (723)
T ss_dssp             ----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CTT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             ----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence                346678999999999999999999999876       222       25678899999999999999999999887


Q ss_pred             HHHHHhhcCCCchhHHhhccchhhhHHHHhHHhcCcccc
Q 020453          286 KRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFR  324 (326)
Q Consensus       286 ~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (326)
                      ++      +|+.+....++  +.++..++++.++...|+
T Consensus       139 ~l------~P~~~~a~~~L--~~~l~~~g~~~~A~~~~~  169 (723)
T 4gyw_A          139 KL------KPDFPDAYCNL--AHCLQIVCDWTDYDERMK  169 (723)
T ss_dssp             HH------CSCCHHHHHHH--HHHHHHTTCCTTHHHHHH
T ss_pred             Hh------CCCChHHHhhh--hhHHHhcccHHHHHHHHH
Confidence            64      56776666666  666666665555544443

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=98.06  E-value=0.00014  Score=65.40  Aligned_cols=135  Identities=14%  Similarity=0.140  Sum_probs=99.8

Q ss_pred             HHHHHHHHHHHhCCchhHhhHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhc
Q 020453          167 VLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKR  246 (326)
Q Consensus       167 ~l~~~C~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~  246 (326)
                      .+..++.+....++...+..+.+.+.........     ..........++.+....|++++|+..|++++++...... 
T Consensus       229 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~-  302 (406)
T 3sf4_A          229 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKD-----RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELND-  302 (406)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcC-----chHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCC-
Confidence            4445556677788889999888888877666543     3344567788999999999999999999999988765321 


Q ss_pred             CCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHhhccchhhhHHHHhH
Q 020453          247 HSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNH  316 (326)
Q Consensus       247 ~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~  316 (326)
                             ....+..+..+|.++..+|++++|+.++++++.+.+.....+..+.....+  +.++..+|+.
T Consensus       303 -------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l--~~~~~~~g~~  363 (406)
T 3sf4_A          303 -------RIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNL--SDLQMVLGLS  363 (406)
T ss_dssp             -------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH--HHHHHHHHTT
T ss_pred             -------cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHH--HHHHHHhhHh
Confidence                   234567788999999999999999999999999988763333334444445  5555555543

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=98.03  E-value=0.0001  Score=66.79  Aligned_cols=144  Identities=15%  Similarity=0.116  Sum_probs=106.8

Q ss_pred             HHHHHHHHHHHhCCchhHhhHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhc
Q 020453          167 VLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKR  246 (326)
Q Consensus       167 ~l~~~C~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~  246 (326)
                      .+..++.+....++...+..+.+.+.........     ..........++.+....+++++|+..|++++++...... 
T Consensus       225 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-  298 (411)
T 4a1s_A          225 ACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGD-----RAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGE-  298 (411)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC-----HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTC-
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCC-----cHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCC-
Confidence            4445556677788888898888888776655432     2334557788999999999999999999999988765311 


Q ss_pred             CCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHhhccchhhhHHHHhHHhcCccccc
Q 020453          247 HSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRS  325 (326)
Q Consensus       247 ~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (326)
                             ....+..+..+|.++..+|++++|+.++++++.+.......+..+.+...+  +.++..+|++.++..+|++
T Consensus       299 -------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l--a~~~~~~g~~~~A~~~~~~  368 (411)
T 4a1s_A          299 -------REVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSL--GNAHSAIGGHERALKYAEQ  368 (411)
T ss_dssp             -------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH--HHHHHHTTCHHHHHHHHHH
T ss_pred             -------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHH--HHHHHHhccHHHHHHHHHH
Confidence                   124567788899999999999999999999999988763223334455556  6667777777777776654

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=98.00  E-value=5.6e-05  Score=65.64  Aligned_cols=175  Identities=15%  Similarity=0.163  Sum_probs=119.7

Q ss_pred             HHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhCCchhHhhHHHHHHHHHHhCCCChhHH
Q 020453          126 RAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEI  205 (326)
Q Consensus       126 ~~~~~~~~~~a~~~~~~c~~~l~~~l~~~~~~~~~C~~H~~~l~~~C~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~  205 (326)
                      ..+..|++++|...+...-       ...+...   ......+..++.+....++...+..+.+.+.........     
T Consensus        14 ~~~~~g~~~~A~~~~~~al-------~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-----   78 (338)
T 3ro2_A           14 RLCKSGDCRAGVSFFEAAV-------QVGTEDL---KTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGD-----   78 (338)
T ss_dssp             HHHHTTCHHHHHHHHHHHH-------HHCCSCH---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC-----
T ss_pred             HHHHhccHHHHHHHHHHHH-------hhCcccH---HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccc-----
Confidence            4567888888887775432       2122211   111234445566677788889999888888877655443     


Q ss_pred             HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCC------------
Q 020453          206 IHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGN------------  273 (326)
Q Consensus       206 ~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~------------  273 (326)
                      ..........++.+....|++++|+..|++++++......        ....+..+..++.++..+|+            
T Consensus        79 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  150 (338)
T 3ro2_A           79 QLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELND--------KVGEARALYNLGNVYHAKGKSFGCPGPQDTGE  150 (338)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHHHHHHHTSSSSSCC----
T ss_pred             cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcC--------chHHHHHHHHHHHHHHHcCcccccchhhhhhh
Confidence            2334566788999999999999999999999988765321        12356778889999999999            


Q ss_pred             --------HHHHHHHHHHHHHHHHHhhcCCCchhHHhhccchhhhHHHHhHHhcCccccc
Q 020453          274 --------EDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRS  325 (326)
Q Consensus       274 --------~~~a~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (326)
                              +++|+.++++++.+.+.....+..+.+..++  +..+...+++.++...|++
T Consensus       151 ~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l--~~~~~~~~~~~~A~~~~~~  208 (338)
T 3ro2_A          151 FPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNL--GNTHYLLGNFRDAVIAHEQ  208 (338)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH--HHHHHHHTCHHHHHHHHHH
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH--HHHHHHhCCHHHHHHHHHH
Confidence                    8999999999888877653333334455555  6666666676666665543

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=98.00  E-value=1.7e-05  Score=73.48  Aligned_cols=109  Identities=14%  Similarity=0.034  Sum_probs=79.8

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 020453          210 SVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLE  289 (326)
Q Consensus       210 ~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~  289 (326)
                      ....+.|+.+...+|++++|+..|++++++.+........     ...+.++.++|.++..+|++++|+.+|++++.+.+
T Consensus        51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~-----~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~  125 (472)
T 4g1t_A           51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAE-----IRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCE  125 (472)
T ss_dssp             CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCT-----TTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccc-----hHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhH
Confidence            4467889999999999999999999999998876543321     13467899999999999999999999999999998


Q ss_pred             Hh--hcCCCchhHHhhccchhhhHHH--HhHHhcCccccc
Q 020453          290 SL--TLKPEEAGLEQRCWNSSTTNFQ--KNHLNQLPKFRS  325 (326)
Q Consensus       290 ~l--~~~p~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~  325 (326)
                      .+  ..+++.+.+..+.  +..+..+  +++.+|+..|++
T Consensus       126 ~~~~~~~~~~~~~~~~~--g~~~~~~~~~~y~~A~~~~~k  163 (472)
T 4g1t_A          126 KFSSPYRIESPELDCEE--GWTRLKCGGNQNERAKVCFEK  163 (472)
T ss_dssp             HSCCSSCCCCHHHHHHH--HHHHHHHCTTHHHHHHHHHHH
T ss_pred             hcccccchhhHHHHHHH--HHHHHHHccccHHHHHHHHHH
Confidence            87  2244444444433  2222222  255666666654

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=97.96  E-value=0.00019  Score=62.25  Aligned_cols=176  Identities=15%  Similarity=0.123  Sum_probs=110.0

Q ss_pred             HHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhCCchhHhhHHHHHHHHHHhCCCChhHH
Q 020453          126 RAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEI  205 (326)
Q Consensus       126 ~~~~~~~~~~a~~~~~~c~~~l~~~l~~~~~~~~~C~~H~~~l~~~C~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~  205 (326)
                      ..+..|++++|...+..+-......    ..    -+.....+..++.+....++...+....+.+.........     
T Consensus        52 ~~~~~g~~~~A~~~~~~al~~~~~~----~~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-----  118 (338)
T 3ro2_A           52 AYFYLHDYAKALEYHHHDLTLARTI----GD----QLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELND-----  118 (338)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHH----TC----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-----
T ss_pred             HHHHcCCHHHHHHHHHHHHHHhhcc----cc----cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcC-----
Confidence            4566788888877665443221110    00    1112334445556667788888999888888877666543     


Q ss_pred             HHHHHHHHHHHHHHHHhcCC--------------------HHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHH
Q 020453          206 IHTLSVSLNKIGDLKYYGGD--------------------LQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVA  265 (326)
Q Consensus       206 ~~~i~~~~~~l~~l~~~~~~--------------------~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~  265 (326)
                      ..........++.+....++                    +++|+..|++++++.+....        ....+..+.+++
T Consensus       119 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~--------~~~~~~~~~~l~  190 (338)
T 3ro2_A          119 KVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGD--------RAAQGRAFGNLG  190 (338)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTC--------HHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCC--------HHHHHHHHHHHH
Confidence            23345567788888888888                    89999999888887655321        123456677788


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHhhccchhhhHHHHhHHhcCcccc
Q 020453          266 DVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFR  324 (326)
Q Consensus       266 ~~~~~~~~~~~a~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (326)
                      .++..+|++++|+.++++++.+.......+..+....++  +..+...|+..++...|+
T Consensus       191 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l--~~~~~~~g~~~~A~~~~~  247 (338)
T 3ro2_A          191 NTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNL--GNAYIFLGEFETASEYYK  247 (338)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH--HHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH--HHHHHHcCCHHHHHHHHH
Confidence            888888888888888888887776542222222234444  455555555555554443

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=97.95  E-value=0.0011  Score=50.53  Aligned_cols=144  Identities=13%  Similarity=0.147  Sum_probs=102.0

Q ss_pred             HHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhCCchhHhhHHHHHHHHHHhCCCChhHH
Q 020453          126 RAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEI  205 (326)
Q Consensus       126 ~~~~~~~~~~a~~~~~~c~~~l~~~l~~~~~~~~~C~~H~~~l~~~C~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~  205 (326)
                      ..+..|++++|...+..+-......    ...    ......+..++.+....++...+..+.+.+.........     
T Consensus        18 ~~~~~~~~~~A~~~~~~al~~~~~~----~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~-----   84 (164)
T 3ro3_A           18 THYLLGNFRDAVIAHEQRLLIAKEF----GDK----AAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKD-----   84 (164)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHH----TCH----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-----
T ss_pred             HHHHhcCHHHHHHHHHHHHHHHHHh----CCc----hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC-----
Confidence            3456788888877665443222110    000    011234445567777788999999999888877666543     


Q ss_pred             HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 020453          206 IHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAI  285 (326)
Q Consensus       206 ~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~  285 (326)
                      ..........++.+....+++++|+..|++++++.+....        ....+..+.+++.++..+|++++|++++++++
T Consensus        85 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~  156 (164)
T 3ro3_A           85 RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKD--------RIGEGRACWSLGNAYTALGNHDQAMHFAEKHL  156 (164)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccc--------hHhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence            2334556778999999999999999999999988665321        22456778889999999999999999999999


Q ss_pred             HHHHH
Q 020453          286 KRLES  290 (326)
Q Consensus       286 ~~~~~  290 (326)
                      .+.++
T Consensus       157 ~~~~~  161 (164)
T 3ro3_A          157 EISRE  161 (164)
T ss_dssp             HHHTT
T ss_pred             HHHHH
Confidence            88764

>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}

Probab=97.94  E-value=1.4e-06  Score=64.93  Aligned_cols=43  Identities=30%  Similarity=0.585  Sum_probs=1.0

Q ss_pred             CCcccccccccccCCC------------------eecccCCcchHHhHhcCCC----CCCCCcccc
Q 020453           22 GPLSCMICQALLFECS------------------KCTPCSHVYCKACISRFKD----CPLCGADIE   65 (326)
Q Consensus        22 ~~l~C~iC~~~l~~~p------------------~~l~C~h~fC~~Cl~~~~~----CP~Cr~~~~   65 (326)
                      +.-.|+||++.| ..+                  +.++|+|.|+..||.+|..    ||.||..+.
T Consensus        47 ~~d~CaICl~~~-~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~  111 (117)
T 4a0k_B           47 VVDNCAICRNHI-MDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE  111 (117)
T ss_dssp             CC----------------------------------------------------------------
T ss_pred             CCCcCeECChhh-cCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCeee
Confidence            456899999984 432                  2358999999999999974    999998753

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=97.92  E-value=0.00056  Score=55.07  Aligned_cols=146  Identities=21%  Similarity=0.215  Sum_probs=104.9

Q ss_pred             HHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhCCchhHhhHHHHHHHHHHhCCCChhHH
Q 020453          126 RAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEI  205 (326)
Q Consensus       126 ~~~~~~~~~~a~~~~~~c~~~l~~~l~~~~~~~~~C~~H~~~l~~~C~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~  205 (326)
                      ..+..|++++|...+..+-.....     ...   -+.....+...+.+....++...+....+.+.......+...   
T Consensus        35 ~~~~~g~~~~A~~~~~~al~~~~~-----~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---  103 (203)
T 3gw4_A           35 VYAFMDRFDEARASFQALQQQAQK-----SGD---HTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDP---  103 (203)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHT-----TCC---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCH---
T ss_pred             HHHHhCcHHHHHHHHHHHHHHHHH-----cCC---cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccH---
Confidence            456678888887766544322110     000   111223444556777778899999999988888776665321   


Q ss_pred             HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 020453          206 IHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAI  285 (326)
Q Consensus       206 ~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~  285 (326)
                       ........+++.+....|++++|+..|++++++.+....        ....+..+.+++.++..+|++++|+..+++++
T Consensus       104 -~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  174 (203)
T 3gw4_A          104 -LAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADD--------QVAIACAFRGLGDLAQQEKNLLEAQQHWLRAR  174 (203)
T ss_dssp             -HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccc--------hHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence             234556788999999999999999999999988654221        22456678899999999999999999999999


Q ss_pred             HHHHHh
Q 020453          286 KRLESL  291 (326)
Q Consensus       286 ~~~~~l  291 (326)
                      .+.++.
T Consensus       175 ~~~~~~  180 (203)
T 3gw4_A          175 DIFAEL  180 (203)
T ss_dssp             HHHHHT
T ss_pred             HHHHHc
Confidence            999876

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=97.92  E-value=8.4e-05  Score=58.39  Aligned_cols=109  Identities=14%  Similarity=0.055  Sum_probs=80.4

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCch----hhhHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 020453          209 LSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQ----VLDVAVSLAKVADVDRSIGNEDVAVDGFQEA  284 (326)
Q Consensus       209 i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~----~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~  284 (326)
                      ........|......|++++|+..|.+++++..............    ....+..+.++|.++..+|++++|+..++++
T Consensus        10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~a   89 (162)
T 3rkv_A           10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEV   89 (162)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence            355677899999999999999999999999876554322221110    1234567889999999999999999999888


Q ss_pred             HHHHHHhhcCCCchhHHhhccchhhhHHHHhHHhcCccccc
Q 020453          285 IKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRS  325 (326)
Q Consensus       285 ~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (326)
                      +.+      +|.++....++  +..+..+|++.+++..|++
T Consensus        90 l~~------~p~~~~a~~~~--g~~~~~~g~~~~A~~~~~~  122 (162)
T 3rkv_A           90 LKR------EETNEKALFRR--AKARIAAWKLDEAEEDLKL  122 (162)
T ss_dssp             HHH------STTCHHHHHHH--HHHHHHTTCHHHHHHHHHH
T ss_pred             Hhc------CCcchHHHHHH--HHHHHHHhcHHHHHHHHHH
Confidence            765      56666666666  7777777777777766654

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=97.90  E-value=0.00012  Score=58.40  Aligned_cols=153  Identities=16%  Similarity=0.141  Sum_probs=73.7

Q ss_pred             HHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhCCchhHhhHHHHHHHHHHhCCCChhHH
Q 020453          126 RAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEI  205 (326)
Q Consensus       126 ~~~~~~~~~~a~~~~~~c~~~l~~~l~~~~~~~~~C~~H~~~l~~~C~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~  205 (326)
                      ..+..|++++|...+..+       +..       -|.+...+..++.+....++...+......+...    .+...  
T Consensus        14 ~~~~~g~~~~A~~~~~~a-------l~~-------~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~----~~~~~--   73 (184)
T 3vtx_A           14 KKRTKGDFDGAIRAYKKV-------LKA-------DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL----DTTSA--   73 (184)
T ss_dssp             HHHHHTCHHHHHHHHHHH-------HHH-------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CCCCH--
T ss_pred             HHHHcCCHHHHHHHHHHH-------HHh-------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc----CchhH--
Confidence            345688999998877644       222       2223334444555555566666555544433321    11111  


Q ss_pred             HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 020453          206 IHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAI  285 (326)
Q Consensus       206 ~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~  285 (326)
                           .....++.+....++++.+...+.+++++       .+.+       ......+|.++..+|++++|++.|++++
T Consensus        74 -----~~~~~~~~~~~~~~~~~~a~~~~~~a~~~-------~~~~-------~~~~~~lg~~~~~~g~~~~A~~~~~~~l  134 (184)
T 3vtx_A           74 -----EAYYILGSANFMIDEKQAAIDALQRAIAL-------NTVY-------ADAYYKLGLVYDSMGEHDKAIEAYEKTI  134 (184)
T ss_dssp             -----HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             -----HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------Cccc-------hHHHHHHHHHHHHhCCchhHHHHHHHHH
Confidence                 12233444445555555555555554432       1111       2233445555555555555555555443


Q ss_pred             HHHHHhhcCCCchhHHhhccchhhhHHHHhHHhcCccccc
Q 020453          286 KRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRS  325 (326)
Q Consensus       286 ~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (326)
                      ++      +|.++.+..++  +.++..+|++.+++..|++
T Consensus       135 ~~------~p~~~~~~~~l--g~~~~~~g~~~~A~~~~~~  166 (184)
T 3vtx_A          135 SI------KPGFIRAYQSI--GLAYEGKGLRDEAVKYFKK  166 (184)
T ss_dssp             HH------CTTCHHHHHHH--HHHHHHTTCHHHHHHHHHH
T ss_pred             Hh------cchhhhHHHHH--HHHHHHCCCHHHHHHHHHH
Confidence            32      34444444444  5555555555555554443

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=97.88  E-value=0.00019  Score=59.49  Aligned_cols=152  Identities=13%  Similarity=0.020  Sum_probs=102.5

Q ss_pred             HHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhCCchhHhhHHHHHHHHHHhCCCChhHH
Q 020453          126 RAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEI  205 (326)
Q Consensus       126 ~~~~~~~~~~a~~~~~~c~~~l~~~l~~~~~~~~~C~~H~~~l~~~C~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~  205 (326)
                      ..+..|++++|...+...-       ...+.      .....+.+.+.+....++...++...+.+..    +.+..   
T Consensus        16 ~~~~~~~~~~A~~~~~~al-------~~~~~------~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~----~~p~~---   75 (228)
T 4i17_A           16 DALNAKNYAVAFEKYSEYL-------KLTNN------QDSVTAYNCGVCADNIKKYKEAADYFDIAIK----KNYNL---   75 (228)
T ss_dssp             HHHHTTCHHHHHHHHHHHH-------HHTTT------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----TTCSH---
T ss_pred             HHHHccCHHHHHHHHHHHH-------hccCC------CCcHHHHHHHHHHHHhhcHHHHHHHHHHHHH----hCcch---
Confidence            4667888888888776432       11110      1123344466777778888888777766552    33332   


Q ss_pred             HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 020453          206 IHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAI  285 (326)
Q Consensus       206 ~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~  285 (326)
                          ......++.+...++++++|+..|++++++       .+.+......++..+.++|.++..+|++++|++.|++++
T Consensus        76 ----~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-------~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al  144 (228)
T 4i17_A           76 ----ANAYIGKSAAYRDMKNNQEYIATLTEGIKA-------VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHAT  144 (228)
T ss_dssp             ----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             ----HHHHHHHHHHHHHcccHHHHHHHHHHHHHH-------CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHH
Confidence                335667899999999999999999998765       334444444567788899999999999999999988776


Q ss_pred             HHHHHhhcCCC--chhHHhhccchhhhHHHHhH
Q 020453          286 KRLESLTLKPE--EAGLEQRCWNSSTTNFQKNH  316 (326)
Q Consensus       286 ~~~~~l~~~p~--~~~~~~~~~~~~~~~~~~~~  316 (326)
                      .+      +|+  .+....++  +.++...+..
T Consensus       145 ~~------~p~~~~~~~~~~l--~~~~~~~~~~  169 (228)
T 4i17_A          145 DV------TSKKWKTDALYSL--GVLFYNNGAD  169 (228)
T ss_dssp             TS------SCHHHHHHHHHHH--HHHHHHHHHH
T ss_pred             hc------CCCcccHHHHHHH--HHHHHHHHHH
Confidence            53      566  55555555  5555555544

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.84  E-value=0.00021  Score=65.22  Aligned_cols=176  Identities=13%  Similarity=0.126  Sum_probs=105.3

Q ss_pred             HHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCh----------HHHHHHHHHHHHHHHHHHHhCCchhHhhHHHHHHHHH
Q 020453          126 RAFRAQNVESAKSRLSLCTEDIRDQIERMGNTS----------ELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFL  195 (326)
Q Consensus       126 ~~~~~~~~~~a~~~~~~c~~~l~~~l~~~~~~~----------~~C~~H~~~l~~~C~~~~~~h~~H~~~~~~e~~~~~~  195 (326)
                      ..+..|++.+|...+...       +...+...          ..-....+.+..++..+...++...+..+...+....
T Consensus        13 ~l~~~~~y~eA~~~~~~~-------l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~   85 (434)
T 4b4t_Q           13 RLVNEKQYNEAEQVYLSL-------LDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYM   85 (434)
T ss_dssp             HHHHHTCHHHHHHHHHHH-------HHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHH
T ss_pred             HHHHCCCHHHHHHHHHHH-------HhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence            456678888887766422       22222110          1222233456667777778899888888888777766


Q ss_pred             HhCCCChhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHH
Q 020453          196 MKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNED  275 (326)
Q Consensus       196 ~~L~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~  275 (326)
                      ..+..     ........+.++.+....+++++++..+.+++.+.+.....        +..+....++|.++...|++.
T Consensus        86 ~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--------~~~~~~~~~la~~~~~~g~~~  152 (434)
T 4b4t_Q           86 MQFAK-----SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRV--------FLKHSLSIKLATLHYQKKQYK  152 (434)
T ss_dssp             HTSCH-----HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCC--------SSHHHHHHHHHHHHHHHTCHH
T ss_pred             HHccc-----hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCcc--------HHHHHHHHHHHHHHHHccChH
Confidence            65542     11123345567777777788888888888877765542111        124566677788888888888


Q ss_pred             HHHHHHHHHHHHHHHhhcCCCchhHHhhccchhhhHHHHhHHhcCccc
Q 020453          276 VAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKF  323 (326)
Q Consensus       276 ~a~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (326)
                      +|+..+++++.........+..+.+...+  +.++..++++.++...|
T Consensus       153 ~A~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~A~~~~  198 (434)
T 4b4t_Q          153 DSLALINDLLREFKKLDDKPSLVDVHLLE--SKVYHKLRNLAKSKASL  198 (434)
T ss_dssp             HHHHHHHHHHHHHTTSSCSTHHHHHHHHH--HHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcccchhHHHHHHHH--HHHHHHhCcHHHHHHHH
Confidence            88888877776665543333334444444  44555555555554443

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=97.80  E-value=0.00037  Score=52.55  Aligned_cols=102  Identities=12%  Similarity=0.191  Sum_probs=79.5

Q ss_pred             HHHHHHHHHHhCCchhHhhHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcC
Q 020453          168 LGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRH  247 (326)
Q Consensus       168 l~~~C~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~  247 (326)
                      .+.+|......++...++..++.+.+.    .+..       .....+++.+...++++++|+..|++++++......  
T Consensus        11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~----~p~~-------~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~--   77 (127)
T 4gcn_A           11 EKDLGNAAYKQKDFEKAHVHYDKAIEL----DPSN-------ITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRA--   77 (127)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCC-------HHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccch--
Confidence            344566667888889998888877654    3322       335678999999999999999999999988654221  


Q ss_pred             CCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 020453          248 SNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR  287 (326)
Q Consensus       248 ~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~  287 (326)
                           ....++..+.++|.++..+|++++|++.|++++..
T Consensus        78 -----~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~  112 (127)
T 4gcn_A           78 -----DYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSE  112 (127)
T ss_dssp             -----CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             -----hhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence                 23356778999999999999999999999988753

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=97.80  E-value=0.00087  Score=58.07  Aligned_cols=114  Identities=9%  Similarity=0.033  Sum_probs=92.6

Q ss_pred             HHHHHHHHHHHhCCchhHhhHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhc
Q 020453          167 VLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKR  246 (326)
Q Consensus       167 ~l~~~C~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~  246 (326)
                      .+..++.+....++...+..+++.+......+..    ..........+++.+...++++++|+.+|++++++.++... 
T Consensus       157 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~----~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~-  231 (293)
T 3u3w_A          157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHD----NEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINS-  231 (293)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSC----CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTB-
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccc----chhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCc-
Confidence            3455667777888999999999999887776643    23445667889999999999999999999999998765321 


Q ss_pred             CCCCCchhhhHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHhh
Q 020453          247 HSNVPSQVLDVAVSLAKVADVDRSIGN-EDVAVDGFQEAIKRLESLT  292 (326)
Q Consensus       247 ~~~~~~~~~~la~~l~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~l~  292 (326)
                             ...++..+.++|.++..+|+ +++|+++|++++.+.+.+.
T Consensus       232 -------~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~~~~~  271 (293)
T 3u3w_A          232 -------MALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDILE  271 (293)
T ss_dssp             -------CTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred             -------HHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhC
Confidence                   12468889999999999995 6999999999999998763

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=97.74  E-value=0.00043  Score=57.28  Aligned_cols=92  Identities=15%  Similarity=0.159  Sum_probs=63.7

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 020453          212 SLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL  291 (326)
Q Consensus       212 ~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l  291 (326)
                      ....++.+....|++++|+..|++++++.        .+       ...+.++|.++..+|++++|+..|++++.+    
T Consensus       120 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~--------~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~----  180 (217)
T 2pl2_A          120 LHLQRGLVYALLGERDKAEASLKQALALE--------DT-------PEIRSALAELYLSMGRLDEALAQYAKALEQ----  180 (217)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------CC-------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHhcc--------cc-------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----
Confidence            45678999999999999999999998773        11       345678999999999999999999887753    


Q ss_pred             hcCCCchhHHhhccchhhhHHHHhHHhcCcccccC
Q 020453          292 TLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRSA  326 (326)
Q Consensus       292 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (326)
                        +|++..+..++  +.++..+|++.++...|+++
T Consensus       181 --~P~~~~~~~~l--a~~~~~~g~~~~A~~~~~~~  211 (217)
T 2pl2_A          181 --APKDLDLRVRY--ASALLLKGKAEEAARAAALE  211 (217)
T ss_dssp             --STTCHHHHHHH--HHHHTC--------------
T ss_pred             --CCCChHHHHHH--HHHHHHccCHHHHHHHHHHH
Confidence              67777777777  78888888988888888764

>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.71  E-value=1.5e-05  Score=55.25  Aligned_cols=44  Identities=30%  Similarity=0.592  Sum_probs=36.9

Q ss_pred             CCccccccccccc-CCCeecccC-----CcchHHhHhcCC------CCCCCCcccc
Q 020453           22 GPLSCMICQALLF-ECSKCTPCS-----HVYCKACISRFK------DCPLCGADIE   65 (326)
Q Consensus        22 ~~l~C~iC~~~l~-~~p~~l~C~-----h~fC~~Cl~~~~------~CP~Cr~~~~   65 (326)
                      +...|+||++.+. .++..+||.     |.|-..||.+|.      .||+||..+.
T Consensus        14 ~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~   69 (80)
T 2d8s_A           14 SQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFI   69 (80)
T ss_dssp             TSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCC
T ss_pred             CCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeee
Confidence            5678999998732 358899996     999999999994      4999999876

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=97.63  E-value=0.0016  Score=56.35  Aligned_cols=113  Identities=9%  Similarity=0.089  Sum_probs=88.9

Q ss_pred             HHHHHHHHHHHhCCchhHhhHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhc
Q 020453          167 VLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKR  246 (326)
Q Consensus       167 ~l~~~C~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~  246 (326)
                      .+...+.+....++...+..+++.+...........    ........+++.+...++++++|+.+|++++++.... . 
T Consensus       157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~----~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~-~-  230 (293)
T 2qfc_A          157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNE----EFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRI-N-  230 (293)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCH----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-T-
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccc----cchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhc-C-
Confidence            445566777788999999999998887766655321    1112577899999999999999999999999987431 1 


Q ss_pred             CCCCCchhhhHHHHHHHHHHHHHhcCCHHHH-HHHHHHHHHHHHHh
Q 020453          247 HSNVPSQVLDVAVSLAKVADVDRSIGNEDVA-VDGFQEAIKRLESL  291 (326)
Q Consensus       247 ~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a-~~~~~~~~~~~~~l  291 (326)
                      .      ...++..+.++|.++..+|++++| ..+|++++.+.+.+
T Consensus       231 ~------~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~~~  270 (293)
T 2qfc_A          231 S------MALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDIL  270 (293)
T ss_dssp             B------CSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred             c------HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHh
Confidence            1      113577889999999999999999 78899999999876

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=97.61  E-value=0.0011  Score=58.99  Aligned_cols=166  Identities=13%  Similarity=0.076  Sum_probs=95.8

Q ss_pred             HHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhCCchhHhhHHHHHHHHHHhCCCChhHH
Q 020453          126 RAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEI  205 (326)
Q Consensus       126 ~~~~~~~~~~a~~~~~~c~~~l~~~l~~~~~~~~~C~~H~~~l~~~C~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~  205 (326)
                      ..+..|++++|...+...       +.       ..|.+...+..++.+....++...++.+++.+...    .+..   
T Consensus        74 ~~~~~g~~~~A~~~~~~a-------l~-------~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~----~p~~---  132 (365)
T 4eqf_A           74 KRLKEGDLPVTILFMEAA-------IL-------QDPGDAEAWQFLGITQAENENEQAAIVALQRCLEL----QPNN---  132 (365)
T ss_dssp             HHHHHTCHHHHHHHHHHH-------HH-------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTC---
T ss_pred             HHHHCCCHHHHHHHHHHH-------HH-------hCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc----CCCC---
Confidence            567788888888777533       11       12233445556667777778888888777766544    2222   


Q ss_pred             HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCC----------------Cc------hhh--------
Q 020453          206 IHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNV----------------PS------QVL--------  255 (326)
Q Consensus       206 ~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~----------------~~------~~~--------  255 (326)
                          ......++.+....|++++|+..|++++++...........                ..      ..+        
T Consensus       133 ----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p  208 (365)
T 4eqf_A          133 ----LKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNG  208 (365)
T ss_dssp             ----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSC
T ss_pred             ----HHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCc
Confidence                23456778888888888888888888877543321111000                00      000        


Q ss_pred             h--HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHhhccchhhhHHHHhHHhcCcccc
Q 020453          256 D--VAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFR  324 (326)
Q Consensus       256 ~--la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (326)
                      .  ....+.++|.++..+|++++|++.|++++.+      .|.++.+..++  +.++...|++.+++..|+
T Consensus       209 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~l--~~~~~~~g~~~~A~~~~~  271 (365)
T 4eqf_A          209 DMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTV------RPEDYSLWNRL--GATLANGDRSEEAVEAYT  271 (365)
T ss_dssp             SSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH------CTTCHHHHHHH--HHHHHHTTCHHHHHHHHH
T ss_pred             CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------CCCCHHHHHHH--HHHHHHcCCHHHHHHHHH
Confidence            0  1345566778888888888888877776654      33344444444  444444444444444443

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=97.60  E-value=0.0035  Score=52.06  Aligned_cols=136  Identities=21%  Similarity=0.195  Sum_probs=89.1

Q ss_pred             HHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhCCchhHhhHHHHHHHHHHhCCCChhHH
Q 020453          126 RAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEI  205 (326)
Q Consensus       126 ~~~~~~~~~~a~~~~~~c~~~l~~~l~~~~~~~~~C~~H~~~l~~~C~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~  205 (326)
                      ..+..|++++|...+...-       ...        .....+...+.+....++...++...+.+...........   
T Consensus        14 ~~~~~~~~~~A~~~~~~a~-------~~~--------~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~---   75 (258)
T 3uq3_A           14 KFYKARQFDEAIEHYNKAW-------ELH--------KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADY---   75 (258)
T ss_dssp             HHHHTTCHHHHHHHHHHHH-------HHS--------CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCH---
T ss_pred             HHHHhccHHHHHHHHHHHH-------Hhh--------ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccch---
Confidence            4566788888887775332       111        1123444556677778888999888888777665544322   


Q ss_pred             HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH-------------------HHHhhcCCCCCchhhhHHHHHHHHHH
Q 020453          206 IHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVR-------------------RDAVKRHSNVPSQVLDVAVSLAKVAD  266 (326)
Q Consensus       206 ~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~-------------------~~~~~~~~~~~~~~~~la~~l~~l~~  266 (326)
                       .........++.+....+++++|+..|++++++.                   +......       ......+.++|.
T Consensus        76 -~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~~~~~~~  147 (258)
T 3uq3_A           76 -KVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVN-------PEKAEEARLEGK  147 (258)
T ss_dssp             -HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCC-------HHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcC-------cchHHHHHHHHH
Confidence             2234567789999999999999999999998831                   1111111       123455666777


Q ss_pred             HHHhcCCHHHHHHHHHHHHHH
Q 020453          267 VDRSIGNEDVAVDGFQEAIKR  287 (326)
Q Consensus       267 ~~~~~~~~~~a~~~~~~~~~~  287 (326)
                      ++...|++++|+..|++++.+
T Consensus       148 ~~~~~~~~~~A~~~~~~a~~~  168 (258)
T 3uq3_A          148 EYFTKSDWPNAVKAYTEMIKR  168 (258)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHhcCHHHHHHHHHHHHhc
Confidence            788888888888777776653

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=97.57  E-value=0.0036  Score=55.80  Aligned_cols=145  Identities=15%  Similarity=0.094  Sum_probs=97.5

Q ss_pred             HHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhCCchhHhhHHHHHHHHHHhCCCChhHH
Q 020453          126 RAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEI  205 (326)
Q Consensus       126 ~~~~~~~~~~a~~~~~~c~~~l~~~l~~~~~~~~~C~~H~~~l~~~C~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~  205 (326)
                      ..+..|++++|...+...       +...+....  ......+...+......++...+....+.+.......+.     
T Consensus        23 ~~~~~g~~~~A~~~~~~a-------l~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-----   88 (373)
T 1hz4_A           23 VAINDGNPDEAERLAKLA-------LEELPPGWF--YSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDV-----   88 (373)
T ss_dssp             HHHHTTCHHHHHHHHHHH-------HHTCCTTCH--HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC-----
T ss_pred             HHHHCCCHHHHHHHHHHH-------HHcCCCCch--hHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCc-----
Confidence            455678888876655422       222211111  011123344455666678888888888888777665443     


Q ss_pred             HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 020453          206 IHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAI  285 (326)
Q Consensus       206 ~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~  285 (326)
                      ..........++.+....|++++|+..|++++++.+.......      ...+..+.+++.++..+|++++|..++++++
T Consensus        89 ~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  162 (373)
T 1hz4_A           89 WHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQL------PMHEFLVRIRAQLLWAWARLDEAEASARSGI  162 (373)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTS------THHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccC------cHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            1223455678999999999999999999999998775432211      1345667789999999999999999999998


Q ss_pred             HHHHH
Q 020453          286 KRLES  290 (326)
Q Consensus       286 ~~~~~  290 (326)
                      .+...
T Consensus       163 ~~~~~  167 (373)
T 1hz4_A          163 EVLSS  167 (373)
T ss_dssp             HHTTT
T ss_pred             HHhhc
Confidence            87654

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=97.54  E-value=0.00036  Score=54.63  Aligned_cols=94  Identities=11%  Similarity=-0.042  Sum_probs=70.8

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 020453          210 SVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLE  289 (326)
Q Consensus       210 ~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~  289 (326)
                      ....-.++......|++++|+..|++++++       .+.+       ...+.++|.++..+|++++|++.|++++.+  
T Consensus        36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~-------~P~~-------~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l--   99 (151)
T 3gyz_A           36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIY-------DFYN-------VDYIMGLAAIYQIKEQFQQAADLYAVAFAL--   99 (151)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCCC-------HHHHHHHHHHHHHHccHHHHHHHHHHHHhh--
Confidence            345667888888889999999999888665       2332       345677888889999988888888877654  


Q ss_pred             HhhcCCCchhHHhhccchhhhHHHHhHHhcCccccc
Q 020453          290 SLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRS  325 (326)
Q Consensus       290 ~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (326)
                          +|+++....++  +..+..+|++.++...|++
T Consensus       100 ----~P~~~~~~~~l--g~~~~~lg~~~eA~~~~~~  129 (151)
T 3gyz_A          100 ----GKNDYTPVFHT--GQCQLRLKAPLKAKECFEL  129 (151)
T ss_dssp             ----SSSCCHHHHHH--HHHHHHTTCHHHHHHHHHH
T ss_pred             ----CCCCcHHHHHH--HHHHHHcCCHHHHHHHHHH
Confidence                56666677777  7888888888888777764

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=97.52  E-value=0.00037  Score=51.95  Aligned_cols=92  Identities=14%  Similarity=0.067  Sum_probs=49.7

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 020453          211 VSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLES  290 (326)
Q Consensus       211 ~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  290 (326)
                      .....++......+++++|+..|++++++.       +.+       ...+.++|.++..+|++++|+..+++++.+   
T Consensus         5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-------p~~-------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~---   67 (126)
T 3upv_A            5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRA-------PED-------ARGYSNRAAALAKLMSFPEAIADCNKAIEK---   67 (126)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-------CCC-------hHHHHHHHHHHHHhcCHHHHHHHHHHHHHh---
Confidence            344556666666667777777666665541       111       234555666666666666666666555443   


Q ss_pred             hhcCCCchhHHhhccchhhhHHHHhHHhcCcccc
Q 020453          291 LTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFR  324 (326)
Q Consensus       291 l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (326)
                         +|.+.....++  +.++..+|++.+++..|+
T Consensus        68 ---~p~~~~~~~~l--g~~~~~~~~~~~A~~~~~   96 (126)
T 3upv_A           68 ---DPNFVRAYIRK--ATAQIAVKEYASALETLD   96 (126)
T ss_dssp             ---CTTCHHHHHHH--HHHHHHTTCHHHHHHHHH
T ss_pred             ---CCCcHHHHHHH--HHHHHHHhCHHHHHHHHH
Confidence               34444444444  555555555555544443

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=97.50  E-value=0.0019  Score=57.30  Aligned_cols=92  Identities=13%  Similarity=0.109  Sum_probs=64.2

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 020453          212 SLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL  291 (326)
Q Consensus       212 ~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l  291 (326)
                      ....++.+....|++++|+..|++++++.       +.       ....+.++|.++..+|++++|+..|++++.+    
T Consensus       215 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~-------p~-------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~----  276 (365)
T 4eqf_A          215 LQTGLGVLFHLSGEFNRAIDAFNAALTVR-------PE-------DYSLWNRLGATLANGDRSEEAVEAYTRALEI----  276 (365)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-------TT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------CC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----
Confidence            45667888888899999999998887652       22       1346677888888888888888888777654    


Q ss_pred             hcCCCchhHHhhccchhhhHHHHhHHhcCccccc
Q 020453          292 TLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRS  325 (326)
Q Consensus       292 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (326)
                        +|+++.+..++  +.++..+|++.++...|++
T Consensus       277 --~p~~~~~~~~l--~~~~~~~g~~~~A~~~~~~  306 (365)
T 4eqf_A          277 --QPGFIRSRYNL--GISCINLGAYREAVSNFLT  306 (365)
T ss_dssp             --CTTCHHHHHHH--HHHHHHHTCCHHHHHHHHH
T ss_pred             --CCCchHHHHHH--HHHHHHCCCHHHHHHHHHH
Confidence              45555556556  6666666666666655543

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=97.49  E-value=0.0033  Score=55.84  Aligned_cols=136  Identities=13%  Similarity=0.120  Sum_probs=98.3

Q ss_pred             HHHHHHHHHHHHHHHHhCCchhHhhHHHHHHHHHHhCCC----ChhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 020453          162 SQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPM----DDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSL  237 (326)
Q Consensus       162 ~~H~~~l~~~C~~~~~~h~~H~~~~~~e~~~~~~~~L~~----~~~~~~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl  237 (326)
                      +.....+...+......++...++..++.+.........    ...++.........+++.+...++++++|+..|++++
T Consensus       144 p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al  223 (336)
T 1p5q_A          144 LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKAL  223 (336)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            333445556667777888999998888877766443321    1123444556788899999999999999999999998


Q ss_pred             HHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHhhccchhhhHHHHhHH
Q 020453          238 NVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHL  317 (326)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~  317 (326)
                      ++.       +.       ....+.++|.++..+|++++|+..|++++.+      +|.+.....++  +.++..++++.
T Consensus       224 ~~~-------p~-------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l------~P~~~~a~~~l--~~~~~~~~~~~  281 (336)
T 1p5q_A          224 ELD-------SN-------NEKGLSRRGEAHLAVNDFELARADFQKVLQL------YPNNKAAKTQL--AVCQQRIRRQL  281 (336)
T ss_dssp             HHC-------TT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CSSCHHHHHHH--HHHHHHHHHHH
T ss_pred             HhC-------CC-------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH------CCCCHHHHHHH--HHHHHHHHHHH
Confidence            762       22       2456788999999999999999999988764      56666666666  66666666655


Q ss_pred             hc
Q 020453          318 NQ  319 (326)
Q Consensus       318 ~~  319 (326)
                      ++
T Consensus       282 ~a  283 (336)
T 1p5q_A          282 AR  283 (336)
T ss_dssp             HH
T ss_pred             HH
Confidence            44

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=97.48  E-value=0.00042  Score=63.95  Aligned_cols=112  Identities=13%  Similarity=0.069  Sum_probs=80.2

Q ss_pred             HHHHHHHHHHhCCchhHhhHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcC
Q 020453          168 LGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRH  247 (326)
Q Consensus       168 l~~~C~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~  247 (326)
                      ...++.+....|++.+++..++.+.++.........  .........+++.+...+|++++|+.+|++++++.+......
T Consensus        54 yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~--~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~  131 (472)
T 4g1t_A           54 CNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQA--EIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPY  131 (472)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGC--TTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSS
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCcccc--chHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccccc
Confidence            445566777789999999999988877655443222  122345678999999999999999999999999988754433


Q ss_pred             CCCCchhhhHHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHH
Q 020453          248 SNVPSQVLDVAVSLAKVADVDRS--IGNEDVAVDGFQEAIKR  287 (326)
Q Consensus       248 ~~~~~~~~~la~~l~~l~~~~~~--~~~~~~a~~~~~~~~~~  287 (326)
                      ..      +.+..+.++|.++..  .+++++|++.|++++.+
T Consensus       132 ~~------~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~  167 (472)
T 4g1t_A          132 RI------ESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK  167 (472)
T ss_dssp             CC------CCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH
T ss_pred             ch------hhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh
Confidence            22      235566667655544  45688999999888764

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=97.48  E-value=0.0077  Score=47.31  Aligned_cols=116  Identities=11%  Similarity=0.031  Sum_probs=86.1

Q ss_pred             HHHHHHHHHHhCCchhHhhHHHHHHHHHHhCCCCh-hHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhc
Q 020453          168 LGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDD-LEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKR  246 (326)
Q Consensus       168 l~~~C~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~-~~~~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~  246 (326)
                      +...+......+++..++..++.+.+......... ......-.....+++.+...+|++++|+..|.+++++.....+-
T Consensus        14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~   93 (159)
T 2hr2_A           14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL   93 (159)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence            33445555678888999988888887765422110 01122234477899999999999999999999999986665555


Q ss_pred             CCCCCchhhhHHHHH----HHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 020453          247 HSNVPSQVLDVAVSL----AKVADVDRSIGNEDVAVDGFQEAIKRLES  290 (326)
Q Consensus       247 ~~~~~~~~~~la~~l----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  290 (326)
                      .+.       .+..+    .+.|.++..+|++++|+..|++++++--+
T Consensus        94 ~pd-------~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~  134 (159)
T 2hr2_A           94 NQD-------EGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEE  134 (159)
T ss_dssp             TST-------HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             CCc-------hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence            553       34455    89999999999999999999999998744

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=97.44  E-value=0.0024  Score=47.92  Aligned_cols=111  Identities=12%  Similarity=0.091  Sum_probs=82.7

Q ss_pred             HHHHHHHHHHHHHHHhCCchhHhhHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 020453          163 QLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRD  242 (326)
Q Consensus       163 ~H~~~l~~~C~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~  242 (326)
                      ...+.+...|......++...++..++.+.+.    .+..       .....+++.+...+|++++|+..|++++++   
T Consensus        11 ~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~----~p~~-------~~~~~~~~~~~~~~~~~~~A~~~~~~al~~---   76 (126)
T 4gco_A           11 ELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR----DPEN-------AILYSNRAACLTKLMEFQRALDDCDTCIRL---   76 (126)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCC-------HHHHHHHhhHHHhhccHHHHHHHHHHHHHh---
Confidence            34445555677777889999998888776643    2322       235678899999999999999999999876   


Q ss_pred             HhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHhhc
Q 020453          243 AVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRC  304 (326)
Q Consensus       243 ~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~p~~~~~~~~~  304 (326)
                          .+.+       ...+.++|.++..+|++++|++.|++++++      +|++..+..++
T Consensus        77 ----~p~~-------~~a~~~lg~~~~~~~~~~~A~~~~~~al~l------~P~~~~a~~~l  121 (126)
T 4gco_A           77 ----DSKF-------IKGYIRKAACLVAMREWSKAQRAYEDALQV------DPSNEEAREGV  121 (126)
T ss_dssp             ----CTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHH
T ss_pred             ----hhhh-------hHHHHHHHHHHHHCCCHHHHHHHHHHHHHH------CcCCHHHHHHH
Confidence                2222       456788999999999999999999988764      67776655544

>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}

Probab=97.43  E-value=2.1e-05  Score=55.70  Aligned_cols=42  Identities=26%  Similarity=0.714  Sum_probs=35.1

Q ss_pred             ccccccccccCCCeecccCCcchHHhHhcCC-----CCCCCCccccc
Q 020453           25 SCMICQALLFECSKCTPCSHVYCKACISRFK-----DCPLCGADIEK   66 (326)
Q Consensus        25 ~C~iC~~~l~~~p~~l~C~h~fC~~Cl~~~~-----~CP~Cr~~~~~   66 (326)
                      .|++|.-.+..-.+++||.|.||.+|+..|+     .||.|+..+..
T Consensus         3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~r   49 (101)
T 3vk6_A            3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQR   49 (101)
T ss_dssp             BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSE
T ss_pred             ecCccCCCeEEEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeee
Confidence            5888988755568999999999999997653     49999998874

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=97.43  E-value=0.0015  Score=56.62  Aligned_cols=103  Identities=17%  Similarity=0.237  Sum_probs=75.2

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 020453          211 VSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLES  290 (326)
Q Consensus       211 ~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  290 (326)
                      .....++.+....+++++|+..|++++++.........     .......+.++|.++..+|++++|+..+++++.+   
T Consensus       194 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~---  265 (330)
T 3hym_B          194 FVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVT-----VDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVL---  265 (330)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCT-----TTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhcccccc-----ccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh---
Confidence            34567888889999999999999999887544222111     0122456778899999999999999999888764   


Q ss_pred             hhcCCCchhHHhhccchhhhHHHHhHHhcCcccccC
Q 020453          291 LTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRSA  326 (326)
Q Consensus       291 l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (326)
                         .|.+..+..++  +.++..+|+..++...|++|
T Consensus       266 ---~~~~~~~~~~l--a~~~~~~g~~~~A~~~~~~a  296 (330)
T 3hym_B          266 ---IPQNASTYSAI--GYIHSLMGNFENAVDYFHTA  296 (330)
T ss_dssp             ---STTCSHHHHHH--HHHHHHHTCHHHHHHHHHTT
T ss_pred             ---CccchHHHHHH--HHHHHHhccHHHHHHHHHHH
Confidence               45566666667  77777778888777777654

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=97.38  E-value=0.0012  Score=51.28  Aligned_cols=83  Identities=14%  Similarity=0.138  Sum_probs=60.6

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 020453          212 SLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL  291 (326)
Q Consensus       212 ~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l  291 (326)
                      ..-.++.+....+++++|+..|++++++       .+.+       ...+.++|.++..+|++++|+..|++++++    
T Consensus        33 ~~~~la~~y~~~~~~~~A~~~~~~al~~-------~p~~-------~~a~~~lg~~~~~~~~~~~A~~~~~~al~~----   94 (150)
T 4ga2_A           33 KGFYFAKLYYEAKEYDLAKKYICTYINV-------QERD-------PKAHRFLGLLYELEENTDKAVECYRRSVEL----   94 (150)
T ss_dssp             THHHHHHHHHHTTCHHHHHHHHHHHHHH-------CTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCCC-------HHHHHHHHHHHHHcCchHHHHHHHHHHHHh----
Confidence            3346899999999999999999999876       2322       456788999999999999999999888764    


Q ss_pred             hcCCCchhHHhhccchhhhHHHHhH
Q 020453          292 TLKPEEAGLEQRCWNSSTTNFQKNH  316 (326)
Q Consensus       292 ~~~p~~~~~~~~~~~~~~~~~~~~~  316 (326)
                        +|.++.+..++  +.++..+++.
T Consensus        95 --~p~~~~~~~~l--a~~~~~~~~~  115 (150)
T 4ga2_A           95 --NPTQKDLVLKI--AELLCKNDVT  115 (150)
T ss_dssp             --CTTCHHHHHHH--HHHHHHHCSS
T ss_pred             --CCCCHHHHHHH--HHHHHHcCCh
Confidence              45555555545  4444444433

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=97.37  E-value=0.00057  Score=53.60  Aligned_cols=29  Identities=7%  Similarity=0.170  Sum_probs=15.7

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 020453          259 VSLAKVADVDRSIGNEDVAVDGFQEAIKR  287 (326)
Q Consensus       259 ~~l~~l~~~~~~~~~~~~a~~~~~~~~~~  287 (326)
                      ..+.++|.++..+|++++|+..|++++.+
T Consensus        80 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~  108 (164)
T 3sz7_A           80 KAWSRLGLARFDMADYKGAKEAYEKGIEA  108 (164)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence            34455555555555555555555555443

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=97.35  E-value=0.0039  Score=55.07  Aligned_cols=93  Identities=15%  Similarity=0.138  Sum_probs=66.3

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 020453          211 VSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLES  290 (326)
Q Consensus       211 ~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  290 (326)
                      .....++.+....|++++|+..|++++++       .+.       ....+.++|.++..+|++++|+..|++++.+   
T Consensus       218 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~-------~~~-------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---  280 (368)
T 1fch_A          218 DVQCGLGVLFNLSGEYDKAVDCFTAALSV-------RPN-------DYLLWNKLGATLANGNQSEEAVAAYRRALEL---  280 (368)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CTT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CcC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---
Confidence            34566788888889999999999888765       122       1346677888888888888888888877654   


Q ss_pred             hhcCCCchhHHhhccchhhhHHHHhHHhcCccccc
Q 020453          291 LTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRS  325 (326)
Q Consensus       291 l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (326)
                         .|....+..++  +.++..+|++.++...|++
T Consensus       281 ---~~~~~~~~~~l--~~~~~~~g~~~~A~~~~~~  310 (368)
T 1fch_A          281 ---QPGYIRSRYNL--GISCINLGAHREAVEHFLE  310 (368)
T ss_dssp             ---CTTCHHHHHHH--HHHHHHHTCHHHHHHHHHH
T ss_pred             ---CCCcHHHHHHH--HHHHHHCCCHHHHHHHHHH
Confidence               45555566666  6666677777776666554

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=97.32  E-value=0.0089  Score=44.12  Aligned_cols=112  Identities=10%  Similarity=0.054  Sum_probs=81.9

Q ss_pred             HHHHHHHHHHhCCchhHhhHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcC
Q 020453          168 LGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRH  247 (326)
Q Consensus       168 l~~~C~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~  247 (326)
                      +...+......++...++..++.+...    .+..       .....+++.+...++++++|+..|++++++       .
T Consensus         7 ~~~~g~~~~~~~~~~~A~~~~~~al~~----~p~~-------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-------~   68 (126)
T 3upv_A            7 ARLEGKEYFTKSDWPNAVKAYTEMIKR----APED-------ARGYSNRAAALAKLMSFPEAIADCNKAIEK-------D   68 (126)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------C
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHh----CCCC-------hHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-------C
Confidence            344455556778888888777766544    2222       245678899999999999999999999876       2


Q ss_pred             CCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHhhc
Q 020453          248 SNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRC  304 (326)
Q Consensus       248 ~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~p~~~~~~~~~  304 (326)
                      +.+       ...+.++|.++..+|++++|+..|++++.+-......|.+..+...+
T Consensus        69 p~~-------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l  118 (126)
T 3upv_A           69 PNF-------VRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLY  118 (126)
T ss_dssp             TTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHH
T ss_pred             CCc-------HHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHH
Confidence            221       45677899999999999999999999999876554456665555444

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=97.31  E-value=0.006  Score=47.48  Aligned_cols=103  Identities=10%  Similarity=0.057  Sum_probs=78.5

Q ss_pred             HHHHHHHHHHHHHHHHHhCCchhHhhHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 020453          161 CSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVR  240 (326)
Q Consensus       161 C~~H~~~l~~~C~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~  240 (326)
                      -|.+.+.+..++......++...++..++.+...    .+...       .....++.+...+|++++|+..|++++++ 
T Consensus        32 ~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~----~P~~~-------~~~~~lg~~~~~~g~~~~Ai~~~~~al~l-   99 (151)
T 3gyz_A           32 PDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY----DFYNV-------DYIMGLAAIYQIKEQFQQAADLYAVAFAL-   99 (151)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred             CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCH-------HHHHHHHHHHHHHccHHHHHHHHHHHHhh-
Confidence            3555556666777777888988888887765543    33333       34568999999999999999999999776 


Q ss_pred             HHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 020453          241 RDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRL  288 (326)
Q Consensus       241 ~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~  288 (326)
                            .+.+       ...+.++|.++..+|++++|+..|++++.+-
T Consensus       100 ------~P~~-------~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~  134 (151)
T 3gyz_A          100 ------GKND-------YTPVFHTGQCQLRLKAPLKAKECFELVIQHS  134 (151)
T ss_dssp             ------SSSC-------CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             ------CCCC-------cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence                  2333       2457789999999999999999999888753

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=97.29  E-value=0.00076  Score=60.99  Aligned_cols=110  Identities=15%  Similarity=0.119  Sum_probs=76.5

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCC--CCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 020453          208 TLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSN--VPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAI  285 (326)
Q Consensus       208 ~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~--~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~  285 (326)
                      ........++......+++++|+..|++++++..........  ........+..+.++|.++..+|++++|++++++++
T Consensus       221 ~~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al  300 (370)
T 1ihg_A          221 LISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEAL  300 (370)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence            345567788999999999999999999999976553211000  000112356778889999999999999998888777


Q ss_pred             HHHHHhhcCCCchhHHhhccchhhhHHHHhHHhcCccccc
Q 020453          286 KRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRS  325 (326)
Q Consensus       286 ~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (326)
                      ++      +|+++....++  +..+..++++.+++..|++
T Consensus       301 ~~------~p~~~~a~~~l--g~~~~~~g~~~eA~~~l~~  332 (370)
T 1ihg_A          301 EI------DPSNTKALYRR--AQGWQGLKEYDQALADLKK  332 (370)
T ss_dssp             TT------CTTCHHHHHHH--HHHHHHTTCHHHHHHHHHH
T ss_pred             Hh------CchhHHHHHHH--HHHHHHccCHHHHHHHHHH
Confidence            53      45565566666  6666666777666666654

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=97.26  E-value=0.00039  Score=61.93  Aligned_cols=112  Identities=10%  Similarity=0.015  Sum_probs=81.1

Q ss_pred             HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCC-CchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 020453          206 IHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNV-PSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEA  284 (326)
Q Consensus       206 ~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~-~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~  284 (326)
                      ..........++.+....+++++|+..|++++++.........+. .......+..+.++|.++..+|++++|+..|+++
T Consensus       143 ~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~a  222 (336)
T 1p5q_A          143 KLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKA  222 (336)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            344566778899999999999999999999988743211000000 0011123567889999999999999999999988


Q ss_pred             HHHHHHhhcCCCchhHHhhccchhhhHHHHhHHhcCccccc
Q 020453          285 IKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRS  325 (326)
Q Consensus       285 ~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (326)
                      +.+      +|.++....++  +..+..++++.+++..|++
T Consensus       223 l~~------~p~~~~a~~~l--g~~~~~~g~~~~A~~~~~~  255 (336)
T 1p5q_A          223 LEL------DSNNEKGLSRR--GEAHLAVNDFELARADFQK  255 (336)
T ss_dssp             HHH------CTTCHHHHHHH--HHHHHHTTCHHHHHHHHHH
T ss_pred             HHh------CCCcHHHHHHH--HHHHHHCCCHHHHHHHHHH
Confidence            765      56676777777  7788888888888777765

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=97.24  E-value=0.014  Score=46.89  Aligned_cols=133  Identities=11%  Similarity=0.054  Sum_probs=90.1

Q ss_pred             HHHHHHHHHHHHhCCchhHhhHHHHHHHHHHhCCC-----ChhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 020453          166 AVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPM-----DDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVR  240 (326)
Q Consensus       166 ~~l~~~C~~~~~~h~~H~~~~~~e~~~~~~~~L~~-----~~~~~~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~  240 (326)
                      ..+...+......++...++..+..+.........     ..............+++.+....+++++|+..|++++++ 
T Consensus        39 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-  117 (198)
T 2fbn_A           39 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI-  117 (198)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-
Confidence            34444556666778888888887776654322110     000111222356778999999999999999999999876 


Q ss_pred             HHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHhhccchhhhHHHHhHHhcC
Q 020453          241 RDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQL  320 (326)
Q Consensus       241 ~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~  320 (326)
                            .+.       ....+.++|.++..+|++++|+..|++++.+      .|.+..+...+  ..+...+++..+..
T Consensus       118 ------~p~-------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~l--~~~~~~~~~~~~~~  176 (198)
T 2fbn_A          118 ------DKN-------NVKALYKLGVANMYFGFLEEAKENLYKAASL------NPNNLDIRNSY--ELCVNKLKEARKKD  176 (198)
T ss_dssp             ------STT-------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH------STTCHHHHHHH--HHHHHHHHHHHC--
T ss_pred             ------Ccc-------cHHHHHHHHHHHHHcccHHHHHHHHHHHHHH------CCCcHHHHHHH--HHHHHHHHHHHHHH
Confidence                  222       2456778899999999999999999888765      56666666666  66666666665554

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=97.20  E-value=0.0018  Score=50.17  Aligned_cols=61  Identities=15%  Similarity=0.016  Sum_probs=30.4

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 020453          214 NKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRL  288 (326)
Q Consensus       214 ~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~  288 (326)
                      ..++.+....|++++|+..|++++++       .+.+       ...+.++|.++..+|++++|+..|++++.+.
T Consensus        59 ~~lg~~~~~~g~~~~A~~~~~~al~l-------~p~~-------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~  119 (148)
T 2vgx_A           59 LGLGACRQAMGQYDLAIHSYSYGAVM-------DIXE-------PRFPFHAAECLLQXGELAEAESGLFLAQELI  119 (148)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHH-------STTC-------THHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHhc-------CCCC-------chHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence            34455555555555555555555443       1111       1234455566666666666665555554443

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=97.20  E-value=0.0035  Score=52.05  Aligned_cols=137  Identities=15%  Similarity=0.194  Sum_probs=92.4

Q ss_pred             HHHHHHHHHHHhCCchhHhhHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhc
Q 020453          167 VLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKR  246 (326)
Q Consensus       167 ~l~~~C~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~  246 (326)
                      .+...+.+....++...++.+++.+....     ..       ......++.+....+++++|+..|++++++...... 
T Consensus         7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-----~~-------~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~-   73 (258)
T 3uq3_A            7 KEKAEGNKFYKARQFDEAIEHYNKAWELH-----KD-------ITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRA-   73 (258)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-----CC-------THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHhh-----cc-------HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCccccc-
Confidence            34445566667788888888887766543     11       234567888999999999999999999887554211 


Q ss_pred             CCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-------------------HHHh-hcCCCchhHHhhccc
Q 020453          247 HSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR-------------------LESL-TLKPEEAGLEQRCWN  306 (326)
Q Consensus       247 ~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~-------------------~~~l-~~~p~~~~~~~~~~~  306 (326)
                            .....+..+..+|.++..+|++++|++.+++++.+                   +++. ..+|..+.+...+  
T Consensus        74 ------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--  145 (258)
T 3uq3_A           74 ------DYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLE--  145 (258)
T ss_dssp             ------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH--
T ss_pred             ------chHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHH--
Confidence                  11134677888999999999999999999999883                   2222 2344444444444  


Q ss_pred             hhhhHHHHhHHhcCcccc
Q 020453          307 SSTTNFQKNHLNQLPKFR  324 (326)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~  324 (326)
                      +..+...+++.+++..|+
T Consensus       146 ~~~~~~~~~~~~A~~~~~  163 (258)
T 3uq3_A          146 GKEYFTKSDWPNAVKAYT  163 (258)
T ss_dssp             HHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHH
Confidence            555555555555555444

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=97.18  E-value=0.011  Score=45.96  Aligned_cols=130  Identities=15%  Similarity=0.097  Sum_probs=89.7

Q ss_pred             HHHHHHHHHHhCCchhHhhHHHHHHHHHHhCC----CChh---HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 020453          168 LGMLGDCCRAMGDADAAVAYFADSVEFLMKLP----MDDL---EIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVR  240 (326)
Q Consensus       168 l~~~C~~~~~~h~~H~~~~~~e~~~~~~~~L~----~~~~---~~~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~  240 (326)
                      +...+......++...++..+..+........    +...   .+.........+++.+...++++++|+..|.+++++ 
T Consensus        14 ~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~-   92 (162)
T 3rkv_A           14 LRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKR-   92 (162)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc-
Confidence            34445555677888889888888876643221    1111   123444567788999999999999999999999877 


Q ss_pred             HHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCch-hHHhhccchhhhHHHHhHHhc
Q 020453          241 RDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEA-GLEQRCWNSSTTNFQKNHLNQ  319 (326)
Q Consensus       241 ~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~p~~~-~~~~~~~~~~~~~~~~~~~~~  319 (326)
                            .+.       .+..+.++|.++..+|++++|+..|++++.+      +|.+. .+...+  ..+...++.+.+.
T Consensus        93 ------~p~-------~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l------~p~~~~~~~~~l--~~~~~~~~~~~~~  151 (162)
T 3rkv_A           93 ------EET-------NEKALFRRAKARIAAWKLDEAEEDLKLLLRN------HPAAASVVAREM--KIVTERRAEKKAD  151 (162)
T ss_dssp             ------STT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CGGGHHHHHHHH--HHHHHHHHHHTTS
T ss_pred             ------CCc-------chHHHHHHHHHHHHHhcHHHHHHHHHHHHhc------CCCCHHHHHHHH--HHHHHHHHHHHHH
Confidence                  232       2456778999999999999999999888765      45555 455555  4454555544433

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=97.16  E-value=0.0095  Score=48.96  Aligned_cols=149  Identities=17%  Similarity=0.160  Sum_probs=96.4

Q ss_pred             HHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhCCchhHhhHHHHHHHHHHhCCCChhHH
Q 020453          126 RAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEI  205 (326)
Q Consensus       126 ~~~~~~~~~~a~~~~~~c~~~l~~~l~~~~~~~~~C~~H~~~l~~~C~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~  205 (326)
                      ..+..|++++|...+..+       +.       .-|.....+..++.+....++...++...+.+..    +.+....+
T Consensus        51 ~~~~~~~~~~A~~~~~~a-------l~-------~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~----~~p~~~~~  112 (228)
T 4i17_A           51 CADNIKKYKEAADYFDIA-------IK-------KNYNLANAYIGKSAAYRDMKNNQEYIATLTEGIK----AVPGNATI  112 (228)
T ss_dssp             HHHHTTCHHHHHHHHHHH-------HH-------TTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HSTTCHHH
T ss_pred             HHHHhhcHHHHHHHHHHH-------HH-------hCcchHHHHHHHHHHHHHcccHHHHHHHHHHHHH----HCCCcHHH
Confidence            456678888887766533       11       1222334555666777788888888877766554    34555666


Q ss_pred             HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCH-----------
Q 020453          206 IHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNE-----------  274 (326)
Q Consensus       206 ~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~-----------  274 (326)
                      ...+......+|.+....+++++|+..|++++++       .+.+     ..+..+.++|.++..+|+.           
T Consensus       113 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-------~p~~-----~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~  180 (228)
T 4i17_A          113 EKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV-------TSKK-----WKTDALYSLGVLFYNNGADVLRKATPLASS  180 (228)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-------SCHH-----HHHHHHHHHHHHHHHHHHHHHHHHGGGTTT
T ss_pred             HHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc-------CCCc-----ccHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence            6777778889999999999999999999998764       2210     0233444555555544443           


Q ss_pred             ---------HHHHHHHHHHHHHHHHh-hcCCCchhHHhhc
Q 020453          275 ---------DVAVDGFQEAIKRLESL-TLKPEEAGLEQRC  304 (326)
Q Consensus       275 ---------~~a~~~~~~~~~~~~~l-~~~p~~~~~~~~~  304 (326)
                               ..+...|++|+..+++. ...|++..+...+
T Consensus       181 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l  220 (228)
T 4i17_A          181 NKEKYASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQ  220 (228)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHH
Confidence                     44556667777777776 6678776655433

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=97.11  E-value=0.00074  Score=54.75  Aligned_cols=108  Identities=8%  Similarity=-0.004  Sum_probs=77.1

Q ss_pred             HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCch-h-----hhHHHHHHHHHHHHHhcCCHHHHHH
Q 020453          206 IHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQ-V-----LDVAVSLAKVADVDRSIGNEDVAVD  279 (326)
Q Consensus       206 ~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~-~-----~~la~~l~~l~~~~~~~~~~~~a~~  279 (326)
                      ..........++......+++++|+..|.+++++....    ...... .     .-.+..+.++|.++..+|++++|+.
T Consensus        34 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~  109 (198)
T 2fbn_A           34 KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHT----EEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAID  109 (198)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTC----TTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc----cccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence            33445567788999999999999999999998753221    100000 0     0023667889999999999999999


Q ss_pred             HHHHHHHHHHHhhcCCCchhHHhhccchhhhHHHHhHHhcCccccc
Q 020453          280 GFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRS  325 (326)
Q Consensus       280 ~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (326)
                      .+++++.+      +|.+.....++  +..+..++++.+++..|++
T Consensus       110 ~~~~al~~------~p~~~~~~~~l--g~~~~~~~~~~~A~~~~~~  147 (198)
T 2fbn_A          110 HASKVLKI------DKNNVKALYKL--GVANMYFGFLEEAKENLYK  147 (198)
T ss_dssp             HHHHHHHH------STTCHHHHHHH--HHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHh------CcccHHHHHHH--HHHHHHcccHHHHHHHHHH
Confidence            99988765      56666666666  7777777888777776654

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=97.11  E-value=0.011  Score=47.79  Aligned_cols=124  Identities=10%  Similarity=0.055  Sum_probs=66.4

Q ss_pred             HHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhCCchhHhhHHHHHHHHHHhCCCChhHH
Q 020453          126 RAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEI  205 (326)
Q Consensus       126 ~~~~~~~~~~a~~~~~~c~~~l~~~l~~~~~~~~~C~~H~~~l~~~C~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~  205 (326)
                      ..+..|++++|...+...-       ...       +.....+..++.+....++...+..+.+.+...    .+..   
T Consensus        17 ~~~~~~~~~~A~~~~~~~~-------~~~-------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~----~~~~---   75 (225)
T 2vq2_A           17 EYMRGQDYRQATASIEDAL-------KSD-------PKNELAWLVRAEIYQYLKVNDKAQESFRQALSI----KPDS---   75 (225)
T ss_dssp             HHHHTTCHHHHHHHHHHHH-------HHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTC---
T ss_pred             HHHHHhhHHHHHHHHHHHH-------HhC-------ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHh----CCCC---
Confidence            3456778888877664321       111       112233344455555666766666666554432    1211   


Q ss_pred             HHHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 020453          206 IHTLSVSLNKIGDLKYYG-GDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEA  284 (326)
Q Consensus       206 ~~~i~~~~~~l~~l~~~~-~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~  284 (326)
                          ......++.+.... +++++|+..|+++++     ....+       .....+..+|.++...|++++|+..++++
T Consensus        76 ----~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~-----~~~~~-------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~  139 (225)
T 2vq2_A           76 ----AEINNNYGWFLCGRLNRPAESMAYFDKALA-----DPTYP-------TPYIANLNKGICSAKQGQFGLAEAYLKRS  139 (225)
T ss_dssp             ----HHHHHHHHHHHHTTTCCHHHHHHHHHHHHT-----STTCS-------CHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             ----hHHHHHHHHHHHHhcCcHHHHHHHHHHHHc-----CcCCc-------chHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence                12334566667777 777777777777654     00111       12334555666666666666666666655


Q ss_pred             HH
Q 020453          285 IK  286 (326)
Q Consensus       285 ~~  286 (326)
                      +.
T Consensus       140 ~~  141 (225)
T 2vq2_A          140 LA  141 (225)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=97.10  E-value=0.0018  Score=48.58  Aligned_cols=60  Identities=20%  Similarity=0.251  Sum_probs=30.4

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 020453          213 LNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIK  286 (326)
Q Consensus       213 ~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~  286 (326)
                      ...++......+++++|+..|.+++++.       +.       ....+.++|.++..+|++++|+..+++++.
T Consensus        12 ~~~~g~~~~~~~~~~~A~~~~~~al~~~-------~~-------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~   71 (137)
T 3q49_B           12 LKEQGNRLFVGRKYPEAAACYGRAITRN-------PL-------VAVYYTNRALCYLKMQQPEQALADCRRALE   71 (137)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCcHHHHHHHHHHHHhhC-------cC-------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            3455555556666666666666655431       11       123344455555555555555555544443

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=97.09  E-value=0.0074  Score=55.99  Aligned_cols=135  Identities=13%  Similarity=0.082  Sum_probs=93.5

Q ss_pred             HHHHHHHHHHHHHHHHhCCchhHhhHHHHHHHHHHhCCC----ChhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 020453          162 SQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPM----DDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSL  237 (326)
Q Consensus       162 ~~H~~~l~~~C~~~~~~h~~H~~~~~~e~~~~~~~~L~~----~~~~~~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl  237 (326)
                      +.....+...+......+++..++..+..+.........    ...+..........+++.+...++++++|+..|.+++
T Consensus       265 ~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al  344 (457)
T 1kt0_A          265 LEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKAL  344 (457)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            334445556667777788999999888888776544321    1122344556778899999999999999999999998


Q ss_pred             HHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHhhccchhhhHHHHhHH
Q 020453          238 NVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHL  317 (326)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~  317 (326)
                      ++.       +.       .+..+.++|.++..+|++++|+..|++++.+      +|.+..+...+  +.++..++++.
T Consensus       345 ~~~-------p~-------~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l------~P~~~~a~~~l--~~~~~~~~~~~  402 (457)
T 1kt0_A          345 GLD-------SA-------NEKGLYRRGEAQLLMNEFESAKGDFEKVLEV------NPQNKAARLQI--SMCQKKAKEHN  402 (457)
T ss_dssp             HHS-------TT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT------C----CHHHHH--HHHHHHHHHHH
T ss_pred             hcC-------Cc-------cHHHHHHHHHHHHHccCHHHHHHHHHHHHHh------CCCCHHHHHHH--HHHHHHHHHHH
Confidence            762       22       2456788999999999999999999887653      45555555555  55555565544


Q ss_pred             h
Q 020453          318 N  318 (326)
Q Consensus       318 ~  318 (326)
                      +
T Consensus       403 ~  403 (457)
T 1kt0_A          403 E  403 (457)
T ss_dssp             H
T ss_pred             H
Confidence            3

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=97.08  E-value=0.003  Score=45.25  Aligned_cols=93  Identities=12%  Similarity=0.097  Sum_probs=66.3

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 020453          211 VSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLES  290 (326)
Q Consensus       211 ~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  290 (326)
                      .....++......+++++|+..|++++++       .+.+       ...+.++|.++..+|++++|++.+++++.+   
T Consensus         5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~-------~p~~-------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---   67 (111)
T 2l6j_A            5 EKQKEQGNSLFKQGLYREAVHCYDQLITA-------QPQN-------PVGYSNKAMALIKLGEYTQAIQMCQQGLRY---   67 (111)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHHHHHHHHH-------CTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTS---
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhc-------CCCC-------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh---
Confidence            34567888999999999999999999876       2221       456788999999999999999988877643   


Q ss_pred             hhcCCCc------hhHHhhccchhhhHHHHhHHhcCccccc
Q 020453          291 LTLKPEE------AGLEQRCWNSSTTNFQKNHLNQLPKFRS  325 (326)
Q Consensus       291 l~~~p~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (326)
                         .|++      ..+..++  +..+..++....++..|++
T Consensus        68 ---~p~~~~~~~~~~~~~~~--~~~~~~~~~~~~a~~~~~~  103 (111)
T 2l6j_A           68 ---TSTAEHVAIRSKLQYRL--ELAQGAVGSVQIPVVEVDE  103 (111)
T ss_dssp             ---CSSTTSHHHHHHHHHHH--HHHHHHHHCCCCCSSSSSS
T ss_pred             ---CCCccHHHHHHHHHHHH--HHHHHHHHhHhhhHhHHHH
Confidence               4444      3344444  5555566655555555543

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=97.08  E-value=0.0027  Score=50.34  Aligned_cols=99  Identities=19%  Similarity=0.219  Sum_probs=62.4

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH---
Q 020453          211 VSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR---  287 (326)
Q Consensus       211 ~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~---  287 (326)
                      ....++|.+....|++++|+..|++++++       .+.+       ...+..+|.++..+|++++|+..++++...   
T Consensus         6 ~iy~~lG~~~~~~g~~~~A~~~~~~al~~-------~p~~-------~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~   71 (184)
T 3vtx_A            6 TIYMDIGDKKRTKGDFDGAIRAYKKVLKA-------DPNN-------VETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT   71 (184)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHH-------CTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCCC-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch
Confidence            45678999999999999999999998865       2222       334556666666667766666666554332   


Q ss_pred             ------------------------HHHh-hcCCCchhHHhhccchhhhHHHHhHHhcCccccc
Q 020453          288 ------------------------LESL-TLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRS  325 (326)
Q Consensus       288 ------------------------~~~l-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (326)
                                              +++. ...|.+..+...+  +..+..+|++.+++..|++
T Consensus        72 ~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~l--g~~~~~~g~~~~A~~~~~~  132 (184)
T 3vtx_A           72 SAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKL--GLVYDSMGEHDKAIEAYEK  132 (184)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH--HHHHHHTTCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHH--HHHHHHhCCchhHHHHHHH
Confidence                                    1111 2345555555555  6666666666666665553

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=97.07  E-value=0.007  Score=54.13  Aligned_cols=59  Identities=15%  Similarity=0.209  Sum_probs=32.8

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 020453          214 NKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIK  286 (326)
Q Consensus       214 ~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~  286 (326)
                      ..++.+....|++++|+..|++++++       .+.       ....+.++|.++...|++++|+..|++++.
T Consensus       173 ~~l~~~~~~~g~~~~A~~~~~~al~~-------~p~-------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~  231 (388)
T 1w3b_A          173 SNLGCVFNAQGEIWLAIHHFEKAVTL-------DPN-------FLDAYINLGNVLKEARIFDRAVAAYLRALS  231 (388)
T ss_dssp             HHHHHHHHTTTCHHHHHHHHHHHHHH-------CTT-------CHHHHHHHHHHHHTTTCTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhc-------CCC-------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            34444555555555555555555432       111       134556677777777777777776665544

>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}

Probab=97.02  E-value=0.00022  Score=51.74  Aligned_cols=34  Identities=18%  Similarity=0.493  Sum_probs=28.6

Q ss_pred             CCcccccccccccCCCee--cccCCcchHHhHhc-CC
Q 020453           22 GPLSCMICQALLFECSKC--TPCSHVYCKACISR-FK   55 (326)
Q Consensus        22 ~~l~C~iC~~~l~~~p~~--l~C~h~fC~~Cl~~-~~   55 (326)
                      +++.|++|.+.++.+|+.  ++|+|+||..|+.. +.
T Consensus         2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h~   38 (101)
T 2jun_A            2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHP   38 (101)
T ss_dssp             CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHSC
T ss_pred             CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHHHhc
Confidence            578999999753566888  99999999999997 53

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=97.01  E-value=0.011  Score=52.58  Aligned_cols=141  Identities=14%  Similarity=0.050  Sum_probs=95.2

Q ss_pred             HHHHHHHHHHhCCchhHhhHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcC
Q 020453          168 LGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRH  247 (326)
Q Consensus       168 l~~~C~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~  247 (326)
                      +...+......++...+..+.+.+...   ... ..  ..........++.+....|++++|...|++++++......  
T Consensus        17 ~~~~a~~~~~~g~~~~A~~~~~~al~~---~~~-~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~--   88 (373)
T 1hz4_A           17 NALRAQVAINDGNPDEAERLAKLALEE---LPP-GW--FYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDV--   88 (373)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHT---CCT-TC--HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC--
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHc---CCC-Cc--hhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCc--
Confidence            333445555667777777766655542   221 11  1223446678899999999999999999999988765211  


Q ss_pred             CCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhc--CCCchhHHhhccchhhhHHHHhHHhcCcccc
Q 020453          248 SNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTL--KPEEAGLEQRCWNSSTTNFQKNHLNQLPKFR  324 (326)
Q Consensus       248 ~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (326)
                            ....+..+.+++.++..+|++++|+..+++++.+.+....  +|.......++  +.++...|+..++...|+
T Consensus        89 ------~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l--a~~~~~~g~~~~A~~~~~  159 (373)
T 1hz4_A           89 ------WHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIR--AQLLWAWARLDEAEASAR  159 (373)
T ss_dssp             ------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHH--HHHHHHTTCHHHHHHHHH
T ss_pred             ------HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHH--HHHHHHhcCHHHHHHHHH
Confidence                  1234667889999999999999999999999999887622  23334445555  566666666666655554

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=97.00  E-value=0.0011  Score=61.94  Aligned_cols=152  Identities=14%  Similarity=0.109  Sum_probs=96.5

Q ss_pred             HHhhhcCH-HHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhCCchhHhhHHHHHHHHHHhCCCChhH
Q 020453          126 RAFRAQNV-ESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLE  204 (326)
Q Consensus       126 ~~~~~~~~-~~a~~~~~~c~~~l~~~l~~~~~~~~~C~~H~~~l~~~C~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~  204 (326)
                      ..+..|++ ++|...+...       +..       -+.+...+..++.+....++...+...++.+...    .+.   
T Consensus       111 ~~~~~g~~~~~A~~~~~~a-------l~~-------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~----~p~---  169 (474)
T 4abn_A          111 ALNVTPDYSPEAEVLLSKA-------VKL-------EPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH----CKN---  169 (474)
T ss_dssp             HHTSSSSCCHHHHHHHHHH-------HHH-------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT----CCC---
T ss_pred             HHHhccccHHHHHHHHHHH-------Hhh-------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----CCC---
Confidence            44557778 8877766533       221       2223345556667777788888887776665432    232   


Q ss_pred             HHHHHHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhc----
Q 020453          205 IIHTLSVSLNKIGDLKYYG---------GDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSI----  271 (326)
Q Consensus       205 ~~~~i~~~~~~l~~l~~~~---------~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~----  271 (326)
                           ......++.+....         +++++|+..|++++++       .+.+       ...+.++|.++..+    
T Consensus       170 -----~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~-------~p~~-------~~~~~~lg~~~~~~~~~~  230 (474)
T 4abn_A          170 -----KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM-------DVLD-------GRSWYILGNAYLSLYFNT  230 (474)
T ss_dssp             -----HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH-------CTTC-------HHHHHHHHHHHHHHHHHT
T ss_pred             -----HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh-------CCCC-------HHHHHHHHHHHHHHHHhh
Confidence                 13556788888777         7788888888887765       3332       34567778888777    


Q ss_pred             ----CCHHHHHHHHHHHHHHHHHhhcCC---CchhHHhhccchhhhHHHHhHHhcCccccc
Q 020453          272 ----GNEDVAVDGFQEAIKRLESLTLKP---EEAGLEQRCWNSSTTNFQKNHLNQLPKFRS  325 (326)
Q Consensus       272 ----~~~~~a~~~~~~~~~~~~~l~~~p---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (326)
                          |++++|+..|++++.+      +|   .++.+..++  +..+..+|++.+++..|++
T Consensus       231 ~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~~~~l--g~~~~~~g~~~~A~~~~~~  283 (474)
T 4abn_A          231 GQNPKISQQALSAYAQAEKV------DRKASSNPDLHLNR--ATLHKYEESYGEALEGFSQ  283 (474)
T ss_dssp             TCCHHHHHHHHHHHHHHHHH------CGGGGGCHHHHHHH--HHHHHHTTCHHHHHHHHHH
T ss_pred             ccccchHHHHHHHHHHHHHh------CCCcccCHHHHHHH--HHHHHHcCCHHHHHHHHHH
Confidence                8888888888887765      33   445555555  5666666666666555543

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=97.00  E-value=0.0039  Score=55.84  Aligned_cols=58  Identities=16%  Similarity=0.153  Sum_probs=36.3

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHhhccchhhhHHHHhHHhcCccccc
Q 020453          260 SLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRS  325 (326)
Q Consensus       260 ~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (326)
                      ....++.++..+|++++|++.|++++.      .+|..+....++  +..+...|+..+++..|++
T Consensus       137 ~~~~l~~~~~~~g~~~~A~~~~~~al~------~~p~~~~~~~~l--~~~~~~~g~~~~A~~~~~~  194 (388)
T 1w3b_A          137 VRSDLGNLLKALGRLEEAKACYLKAIE------TQPNFAVAWSNL--GCVFNAQGEIWLAIHHFEK  194 (388)
T ss_dssp             HHHHHHHHHHTTSCHHHHHHHHHHHHH------HCTTCHHHHHHH--HHHHHTTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHH------hCCCCHHHHHHH--HHHHHHcCCHHHHHHHHHH
Confidence            345566677777777777766665543      356666666666  6666666667666666654

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=96.99  E-value=0.0034  Score=54.32  Aligned_cols=95  Identities=15%  Similarity=0.127  Sum_probs=66.7

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh-hc
Q 020453          215 KIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL-TL  293 (326)
Q Consensus       215 ~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l-~~  293 (326)
                      .++.+....+++++|+..|++++++       .+.       ....+..+|.++...|++++|+..+++++.+.... ..
T Consensus       164 ~l~~~~~~~~~~~~A~~~~~~al~~-------~~~-------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~  229 (330)
T 3hym_B          164 YIGLEYGLTNNSKLAERFFSQALSI-------APE-------DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNE  229 (330)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTT-------CTT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCS
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHh-------CCC-------ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhcccc
Confidence            4666666677777777777766543       222       14567788999999999999999999999988766 21


Q ss_pred             --CCCchhHHhhccchhhhHHHHhHHhcCccccc
Q 020453          294 --KPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRS  325 (326)
Q Consensus       294 --~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (326)
                        .|..+.+..++  +..+..+|++.++...|++
T Consensus       230 ~~~~~~~~~~~~l--a~~~~~~g~~~~A~~~~~~  261 (330)
T 3hym_B          230 VTVDKWEPLLNNL--GHVCRKLKKYAEALDYHRQ  261 (330)
T ss_dssp             CTTTTCCHHHHHH--HHHHHHTTCHHHHHHHHHH
T ss_pred             ccccHHHHHHHHH--HHHHHHhcCHHHHHHHHHH
Confidence              14445566666  6777777777777666654

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=96.98  E-value=0.0032  Score=46.78  Aligned_cols=89  Identities=11%  Similarity=0.095  Sum_probs=68.7

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcC
Q 020453          215 KIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLK  294 (326)
Q Consensus       215 ~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~  294 (326)
                      .++......|++++|+..|++++++       .+.+       ...+..+|.++..+|++++|+..|++++.      .+
T Consensus        22 ~~g~~~~~~g~~~~A~~~~~~al~~-------~P~~-------~~a~~~lg~~~~~~g~~~~A~~~~~~al~------l~   81 (121)
T 1hxi_A           22 EEGLSMLKLANLAEAALAFEAVCQK-------EPER-------EEAWRSLGLTQAENEKDGLAIIALNHARM------LD   81 (121)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHH-------STTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH------HC
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHH-------CCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH------hC
Confidence            4566777889999999999988764       3332       45567789999999999999988887665      36


Q ss_pred             CCchhHHhhccchhhhHHHHhHHhcCccccc
Q 020453          295 PEEAGLEQRCWNSSTTNFQKNHLNQLPKFRS  325 (326)
Q Consensus       295 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (326)
                      |++.....++  +..+..+|++.+++..|++
T Consensus        82 P~~~~~~~~l--a~~~~~~g~~~~A~~~~~~  110 (121)
T 1hxi_A           82 PKDIAVHAAL--AVSHTNEHNANAALASLRA  110 (121)
T ss_dssp             TTCHHHHHHH--HHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHH--HHHHHHcCCHHHHHHHHHH
Confidence            7777777777  8888888888888777654

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=96.97  E-value=0.0011  Score=61.76  Aligned_cols=113  Identities=10%  Similarity=0.025  Sum_probs=81.2

Q ss_pred             HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCC-CCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 020453          206 IHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSN-VPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEA  284 (326)
Q Consensus       206 ~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~-~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~  284 (326)
                      .........+++......++|++|+..|.+++++.........+ ........+..+.++|.++..+|++++|+..|+++
T Consensus       264 ~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~a  343 (457)
T 1kt0_A          264 KLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKA  343 (457)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            44456677889999999999999999999999865321100000 00011123577889999999999999999999988


Q ss_pred             HHHHHHhhcCCCchhHHhhccchhhhHHHHhHHhcCcccccC
Q 020453          285 IKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRSA  326 (326)
Q Consensus       285 ~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (326)
                      +.+      +|.++....++  +..+..++++.+|+..|++|
T Consensus       344 l~~------~p~~~~a~~~~--g~a~~~~g~~~~A~~~~~~a  377 (457)
T 1kt0_A          344 LGL------DSANEKGLYRR--GEAQLLMNEFESAKGDFEKV  377 (457)
T ss_dssp             HHH------STTCHHHHHHH--HHHHHHTTCHHHHHHHHHHH
T ss_pred             Hhc------CCccHHHHHHH--HHHHHHccCHHHHHHHHHHH
Confidence            764      46666667667  77777888888887777653

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=96.96  E-value=0.011  Score=51.98  Aligned_cols=130  Identities=18%  Similarity=0.123  Sum_probs=88.9

Q ss_pred             HHHHHHHHHHHhCCchhHhhHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhc
Q 020453          167 VLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKR  246 (326)
Q Consensus       167 ~l~~~C~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~  246 (326)
                      .+..++.+....++...++...+.+...    .+..       ......++.+....|++++|+..|++++++.      
T Consensus       219 ~~~~l~~~~~~~g~~~~A~~~~~~al~~----~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~------  281 (368)
T 1fch_A          219 VQCGLGVLFNLSGEYDKAVDCFTAALSV----RPND-------YLLWNKLGATLANGNQSEEAVAAYRRALELQ------  281 (368)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHh----CcCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------
Confidence            3444556666778888888777766544    2222       2356788999999999999999999998752      


Q ss_pred             CCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh-h----cCCCchhHHhhccchhhhHHHHhHHhcCc
Q 020453          247 HSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL-T----LKPEEAGLEQRCWNSSTTNFQKNHLNQLP  321 (326)
Q Consensus       247 ~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l-~----~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (326)
                       +.       ....+.++|.++..+|++++|+..|++++.+.... .    .++....+...+  +..+..+|+...+..
T Consensus       282 -~~-------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~g~~~~A~~  351 (368)
T 1fch_A          282 -PG-------YIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTL--RLALSMLGQSDAYGA  351 (368)
T ss_dssp             -TT-------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHH--HHHHHHHTCGGGHHH
T ss_pred             -CC-------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHH--HHHHHHhCChHhHHH
Confidence             22       24567889999999999999999999999876543 1    122334455555  556666665555443


Q ss_pred             cc
Q 020453          322 KF  323 (326)
Q Consensus       322 ~~  323 (326)
                      .+
T Consensus       352 ~~  353 (368)
T 1fch_A          352 AD  353 (368)
T ss_dssp             HH
T ss_pred             hH
Confidence            33

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=96.95  E-value=0.0098  Score=49.41  Aligned_cols=16  Identities=31%  Similarity=0.289  Sum_probs=10.2

Q ss_pred             HHhhhcCHHHHHHHHH
Q 020453          126 RAFRAQNVESAKSRLS  141 (326)
Q Consensus       126 ~~~~~~~~~~a~~~~~  141 (326)
                      ..+..|++++|...+.
T Consensus        46 ~~~~~~~~~~A~~~~~   61 (252)
T 2ho1_A           46 GYLQRGNTEQAKVPLR   61 (252)
T ss_dssp             HHHHTTCTGGGHHHHH
T ss_pred             HHHHcCChHHHHHHHH
Confidence            3455677777766654

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=96.94  E-value=0.019  Score=49.94  Aligned_cols=136  Identities=10%  Similarity=0.092  Sum_probs=82.5

Q ss_pred             HHHHHHHHHHhCCchhHhhHHHHHHHHHHhCCCChhHHHHHH-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 020453          168 LGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTL-----SVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRD  242 (326)
Q Consensus       168 l~~~C~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~~~~i-----~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~  242 (326)
                      +..++.+....++...+....+.+...    .+.........     ....-.++.+....+++++|+..|+++++..  
T Consensus       191 ~~~la~~~~~~~~~~~A~~~~~~a~~~----~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--  264 (359)
T 3ieg_A          191 FYKISTLYYQLGDHELSLSEVRECLKL----DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--  264 (359)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhh----CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--
Confidence            334445555666666666665554432    22222211111     1112244777788899999999999887642  


Q ss_pred             HhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHhhccchhhhHHHHhHHhcCcc
Q 020453          243 AVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPK  322 (326)
Q Consensus       243 ~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (326)
                           +.+.   ......+..+|.++..+|++++|+..+++++.+      +|++..+...+  +.++..+|+..++...
T Consensus       265 -----~~~~---~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~~--~~~~~~~g~~~~A~~~  328 (359)
T 3ieg_A          265 -----PSVA---EYTVRSKERICHCFSKDEKPVEAIRICSEVLQM------EPDNVNALKDR--AEAYLIEEMYDEAIQD  328 (359)
T ss_dssp             -----CSSH---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHH--HHHHHHTTCHHHHHHH
T ss_pred             -----CCch---HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh------CcccHHHHHHH--HHHHHHcCCHHHHHHH
Confidence                 2211   112344667888899999998888888877664      45566666666  6666667777776666


Q ss_pred             ccc
Q 020453          323 FRS  325 (326)
Q Consensus       323 ~~~  325 (326)
                      |++
T Consensus       329 ~~~  331 (359)
T 3ieg_A          329 YEA  331 (359)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            654

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=96.93  E-value=0.0016  Score=47.89  Aligned_cols=100  Identities=12%  Similarity=0.074  Sum_probs=69.2

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 020453          210 SVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLE  289 (326)
Q Consensus       210 ~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~  289 (326)
                      ......++.+....+++++|+..|+++++..       +.+       ...+.++|.++...|++++|+.++++++.+..
T Consensus         4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-------~~~-------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~   69 (131)
T 1elr_A            4 ALKEKELGNDAYKKKDFDTALKHYDKAKELD-------PTN-------MTYITNQAAVYFEKGDYNKCRELCEKAIEVGR   69 (131)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTC-------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-------Ccc-------HHHHHHHHHHHHHhccHHHHHHHHHHHHhhcc
Confidence            3456778888999999999999999997652       221       35677889999999999999999999988765


Q ss_pred             Hh-hcCCCchhHHhhccchhhhHHHHhHHhcCccccc
Q 020453          290 SL-TLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRS  325 (326)
Q Consensus       290 ~l-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (326)
                      .. ...+....+..++  +..+..++++.++...|++
T Consensus        70 ~~~~~~~~~~~~~~~l--a~~~~~~~~~~~A~~~~~~  104 (131)
T 1elr_A           70 ENREDYRQIAKAYARI--GNSYFKEEKYKDAIHFYNK  104 (131)
T ss_dssp             HSTTCHHHHHHHHHHH--HHHHHHTTCHHHHHHHHHH
T ss_pred             ccchhHHHHHHHHHHH--HHHHHHhccHHHHHHHHHH
Confidence            32 1000003344445  5555566666666655543

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=96.93  E-value=0.021  Score=46.81  Aligned_cols=152  Identities=13%  Similarity=0.026  Sum_probs=98.1

Q ss_pred             HHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhCCchhHhhHHHHHHHHHHhCCCChhHH
Q 020453          126 RAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEI  205 (326)
Q Consensus       126 ~~~~~~~~~~a~~~~~~c~~~l~~~l~~~~~~~~~C~~H~~~l~~~C~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~  205 (326)
                      ..+..|++++|...+...       +...+.       ....+..++.+....++...++...+.+...    .+.... 
T Consensus        14 ~~~~~g~~~~A~~~~~~a-------l~~~p~-------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~----~P~~~~-   74 (217)
T 2pl2_A           14 QLYALGRYDAALTLFERA-------LKENPQ-------DPEALYWLARTQLKLGLVNPALENGKTLVAR----TPRYLG-   74 (217)
T ss_dssp             HHHHTTCHHHHHHHHHHH-------HTTSSS-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHH-
T ss_pred             HHHHcCCHHHHHHHHHHH-------HHhCCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCcHH-
Confidence            356678888887766532       222222       2344555667777788888887776655543    343332 


Q ss_pred             HHHHHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCH
Q 020453          206 IHTLSVSLNKIGDLKYYG-----------GDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNE  274 (326)
Q Consensus       206 ~~~i~~~~~~l~~l~~~~-----------~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~  274 (326)
                            ....++.+....           |++++|+..|++++++       .+.+       ...+.++|.++..+|++
T Consensus        75 ------a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~-------~P~~-------~~~~~~lg~~~~~~g~~  134 (217)
T 2pl2_A           75 ------GYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERV-------NPRY-------APLHLQRGLVYALLGER  134 (217)
T ss_dssp             ------HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH-------CTTC-------HHHHHHHHHHHHHTTCH
T ss_pred             ------HHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh-------Cccc-------HHHHHHHHHHHHHcCCh
Confidence                  334566666666           7888888888887665       3332       35667889999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCchhHHhhccchhhhHHHHhHHhcCccccc
Q 020453          275 DVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRS  325 (326)
Q Consensus       275 ~~a~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (326)
                      ++|+..|++++++-       +++.+..++  +.++..+|++.+++..|++
T Consensus       135 ~~A~~~~~~al~~~-------~~~~~~~~l--a~~~~~~g~~~~A~~~~~~  176 (217)
T 2pl2_A          135 DKAEASLKQALALE-------DTPEIRSAL--AELYLSMGRLDEALAQYAK  176 (217)
T ss_dssp             HHHHHHHHHHHHHC-------CCHHHHHHH--HHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcc-------cchHHHHHH--HHHHHHcCCHHHHHHHHHH
Confidence            99999999888763       233444555  6666666666666555543

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=96.93  E-value=0.0047  Score=47.01  Aligned_cols=61  Identities=20%  Similarity=0.104  Sum_probs=31.2

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 020453          214 NKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRL  288 (326)
Q Consensus       214 ~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~  288 (326)
                      ..++.+....+++++|+..|++++++       .+.+       ...+.++|.++..+|++++|+..|++++.+.
T Consensus        56 ~~lg~~~~~~g~~~~A~~~~~~al~~-------~p~~-------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~  116 (142)
T 2xcb_A           56 LGLGACRQSLGLYEQALQSYSYGALM-------DINE-------PRFPFHAAECHLQLGDLDGAESGFYSARALA  116 (142)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHH-------CTTC-------THHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHhc-------CCCC-------cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            34455555555555555555555443       1111       1234455666666666666666666555443

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=96.92  E-value=0.011  Score=48.61  Aligned_cols=151  Identities=14%  Similarity=0.070  Sum_probs=81.6

Q ss_pred             HHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhCCchhHhhHHHHHHHHHHhCCCChhHH
Q 020453          126 RAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEI  205 (326)
Q Consensus       126 ~~~~~~~~~~a~~~~~~c~~~l~~~l~~~~~~~~~C~~H~~~l~~~C~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~  205 (326)
                      ..+..|++++|...+...-       ...+       .....+..++.+....++...+..+.+.+....    +...  
T Consensus        66 ~~~~~~~~~~A~~~~~~~~-------~~~~-------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~----~~~~--  125 (243)
T 2q7f_A           66 LLSSVNELERALAFYDKAL-------ELDS-------SAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG----MENG--  125 (243)
T ss_dssp             HHHHTTCHHHHHHHHHHHH-------HHCT-------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT----CCSH--
T ss_pred             HHHHcCCHHHHHHHHHHHH-------HcCC-------cchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC----CCCH--
Confidence            3455677777766554321       1111       122333344455556677777766665554331    2221  


Q ss_pred             HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 020453          206 IHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAI  285 (326)
Q Consensus       206 ~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~  285 (326)
                           .....++.+....+++++|+..|++++++.       +.+       ...+..++.++...|++++|+..+++++
T Consensus       126 -----~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-------~~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~~~  186 (243)
T 2q7f_A          126 -----DLFYMLGTVLVKLEQPKLALPYLQRAVELN-------END-------TEARFQFGMCLANEGMLDEALSQFAAVT  186 (243)
T ss_dssp             -----HHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-------TTC-------HHHHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred             -----HHHHHHHHHHHHhccHHHHHHHHHHHHHhC-------Ccc-------HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence                 234567777778888888888888876542       111       2345566777777777777777776655


Q ss_pred             HHHHHhhcCCCchhHHhhccchhhhHHHHhHHhcCccc
Q 020453          286 KRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKF  323 (326)
Q Consensus       286 ~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (326)
                      ..      .|.+..+...+  +.++...++..++...|
T Consensus       187 ~~------~~~~~~~~~~l--a~~~~~~~~~~~A~~~~  216 (243)
T 2q7f_A          187 EQ------DPGHADAFYNA--GVTYAYKENREKALEML  216 (243)
T ss_dssp             HH------CTTCHHHHHHH--HHHHHHTTCTTHHHHHH
T ss_pred             Hh------CcccHHHHHHH--HHHHHHccCHHHHHHHH
Confidence            43      33333334334  44444444444443333

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=96.91  E-value=0.032  Score=50.14  Aligned_cols=131  Identities=15%  Similarity=0.162  Sum_probs=93.1

Q ss_pred             HHHHHHHHHHHhCCchhHhhHHHHHHHHHHhCC-----CChhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 020453          167 VLGMLGDCCRAMGDADAAVAYFADSVEFLMKLP-----MDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRR  241 (326)
Q Consensus       167 ~l~~~C~~~~~~h~~H~~~~~~e~~~~~~~~L~-----~~~~~~~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~  241 (326)
                      .+...+......++...++..++.+........     ....+..........+++.+...++++++|+..|++++++  
T Consensus       225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~--  302 (370)
T 1ihg_A          225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI--  302 (370)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh--
Confidence            344455666678888888888887776433210     0011134455677889999999999999999999999864  


Q ss_pred             HHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHhhccchhhhHHHHhHHhc
Q 020453          242 DAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQ  319 (326)
Q Consensus       242 ~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~  319 (326)
                           .+.       .+..+.++|.++..+|++++|+..|++++++      .|++..+...+  ..+...++++.++
T Consensus       303 -----~p~-------~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l------~P~~~~~~~~l--~~~~~~~~~~~~a  360 (370)
T 1ihg_A          303 -----DPS-------NTKALYRRAQGWQGLKEYDQALADLKKAQEI------APEDKAIQAEL--LKVKQKIKAQKDK  360 (370)
T ss_dssp             -----CTT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHH--HHHHHHHHHHHHH
T ss_pred             -----Cch-------hHHHHHHHHHHHHHccCHHHHHHHHHHHHHh------CCCCHHHHHHH--HHHHHHHHHHHHH
Confidence                 222       2456788999999999999999999988764      46666666666  6666666665544

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.91  E-value=0.0012  Score=60.19  Aligned_cols=139  Identities=12%  Similarity=0.013  Sum_probs=98.0

Q ss_pred             HhCCchhHhhHHHHHHHHHHhCCC------ChhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCC
Q 020453          177 AMGDADAAVAYFADSVEFLMKLPM------DDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNV  250 (326)
Q Consensus       177 ~~h~~H~~~~~~e~~~~~~~~L~~------~~~~~~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~  250 (326)
                      ..++..++...+............      ...........+..+|+.+....|++++|+..|.+++++.....+.    
T Consensus        16 ~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~----   91 (434)
T 4b4t_Q           16 NEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS----   91 (434)
T ss_dssp             HHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH----
T ss_pred             HCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch----
Confidence            456677777666655533222111      1112234445667889999999999999999999998876643221    


Q ss_pred             CchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHhhccchhhhHHHHhHHhcCccccc
Q 020453          251 PSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRS  325 (326)
Q Consensus       251 ~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (326)
                          .......+.++.++...|+++.|++++++++.+.......+.-+.+..++  +.++...|++.++...+++
T Consensus        92 ----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l--a~~~~~~g~~~~A~~~l~~  160 (434)
T 4b4t_Q           92 ----KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKL--ATLHYQKKQYKDSLALIND  160 (434)
T ss_dssp             ----HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHH--HHHHHHHTCHHHHHHHHHH
T ss_pred             ----HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHH--HHHHHHccChHHHHHHHHH
Confidence                12345567789999999999999999999999988765455556677778  8888888888877766543

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=96.89  E-value=0.0051  Score=44.99  Aligned_cols=59  Identities=12%  Similarity=0.082  Sum_probs=29.5

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 020453          214 NKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIK  286 (326)
Q Consensus       214 ~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~  286 (326)
                      ..++.+....+++++|+..|.++++.       .+.       ....+..+|.++..+|++++|+..+++++.
T Consensus        50 ~~~a~~~~~~~~~~~A~~~~~~~~~~-------~~~-------~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~  108 (131)
T 2vyi_A           50 CNRAAAYSKLGNYAGAVQDCERAICI-------DPA-------YSKAYGRMGLALSSLNKHVEAVAYYKKALE  108 (131)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHH-------CTT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhchHHHHHHHHHHHhc-------Ccc-------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence            34444555555555555555555443       111       123445555666666666666555555443

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=96.89  E-value=0.0034  Score=59.80  Aligned_cols=127  Identities=13%  Similarity=0.117  Sum_probs=87.1

Q ss_pred             HHHHHHHHHHHHhCCchhHhhHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhh
Q 020453          166 AVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVK  245 (326)
Q Consensus       166 ~~l~~~C~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~  245 (326)
                      ..+..++.+....++...+...++.+..    +.+..       ......++.+....+++++|+..|++++++.     
T Consensus        24 ~~~~~lg~~~~~~g~~~~A~~~~~~al~----~~p~~-------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----   87 (568)
T 2vsy_A           24 VAWLMLADAELGMGDTTAGEMAVQRGLA----LHPGH-------PEAVARLGRVRWTQQRHAEAAVLLQQASDAA-----   87 (568)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHT----TSTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCC-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-----
Confidence            4445556666677777777766665543    23322       2345678889999999999999999988752     


Q ss_pred             cCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHhhccchhhhHHH---HhHHhcCcc
Q 020453          246 RHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQ---KNHLNQLPK  322 (326)
Q Consensus       246 ~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~---~~~~~~~~~  322 (326)
                        +.+       ...+.++|.++..+|++++|++.|++++++      +|++.....++  +..+..+   +++.++...
T Consensus        88 --p~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~l--~~~~~~~~~~g~~~~A~~~  150 (568)
T 2vsy_A           88 --PEH-------PGIALWLGHALEDAGQAEAAAAAYTRAHQL------LPEEPYITAQL--LNWRRRLCDWRALDVLSAQ  150 (568)
T ss_dssp             --TTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHH--HHHHHHTTCCTTHHHHHHH
T ss_pred             --CCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHH--HHHHHHhhccccHHHHHHH
Confidence              221       456778899999999999999888877654      45565666666  6666666   666666555


Q ss_pred             ccc
Q 020453          323 FRS  325 (326)
Q Consensus       323 ~~~  325 (326)
                      |++
T Consensus       151 ~~~  153 (568)
T 2vsy_A          151 VRA  153 (568)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            543

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=96.89  E-value=0.012  Score=49.58  Aligned_cols=168  Identities=7%  Similarity=-0.064  Sum_probs=100.8

Q ss_pred             HHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhCCchhHhhHHHHHHHHHHhCCCChhHH
Q 020453          126 RAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEI  205 (326)
Q Consensus       126 ~~~~~~~~~~a~~~~~~c~~~l~~~l~~~~~~~~~C~~H~~~l~~~C~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~  205 (326)
                      ..+..|++++|...+...       +...+...    .....+..++.+....++...++..++.+....    +...  
T Consensus        24 ~~~~~g~~~~A~~~~~~~-------l~~~p~~~----~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~----p~~~--   86 (261)
T 3qky_A           24 EFYNQGKYDRAIEYFKAV-------FTYGRTHE----WAADAQFYLARAYYQNKEYLLAASEYERFIQIY----QIDP--   86 (261)
T ss_dssp             HHHHTTCHHHHHHHHHHH-------GGGCSCST----THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCT--
T ss_pred             HHHHhCCHHHHHHHHHHH-------HHhCCCCc----chHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHC----CCCc--
Confidence            567788888888776532       22222211    113455667778778888888888777665442    2111  


Q ss_pred             HHHHHHHHHHHHHHHHh--------cCCHHHHHHHHHHHHHHHHHHhhcCCCCCchh----------hhHHHHHHHHHHH
Q 020453          206 IHTLSVSLNKIGDLKYY--------GGDLQAARSYYVRSLNVRRDAVKRHSNVPSQV----------LDVAVSLAKVADV  267 (326)
Q Consensus       206 ~~~i~~~~~~l~~l~~~--------~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~----------~~la~~l~~l~~~  267 (326)
                        ....+.-.++.+...        .+++++|+..|++.++..       +.+....          ..++...-++|.+
T Consensus        87 --~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-------p~~~~~~~a~~~~~~~~~~~~~~~~~la~~  157 (261)
T 3qky_A           87 --RVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY-------PNHELVDDATQKIRELRAKLARKQYEAARL  157 (261)
T ss_dssp             --THHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC-------TTCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             --hhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC-------cCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              123455677888877        889999999999887642       2211110          0122223677999


Q ss_pred             HHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHhhccchhhhHHH----------HhHHhcCcccc
Q 020453          268 DRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQ----------KNHLNQLPKFR  324 (326)
Q Consensus       268 ~~~~~~~~~a~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~  324 (326)
                      +..+|++++|+..|++++...   ..++........+  +..+..+          +++.+++..|+
T Consensus       158 ~~~~g~~~~A~~~~~~~l~~~---p~~~~~~~a~~~l--~~~~~~~g~~~~~~~~~~~~~~A~~~~~  219 (261)
T 3qky_A          158 YERRELYEAAAVTYEAVFDAY---PDTPWADDALVGA--MRAYIAYAEQSVRARQPERYRRAVELYE  219 (261)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHC---TTSTTHHHHHHHH--HHHHHHHHHTSCGGGHHHHHHHHHHHHH
T ss_pred             HHHccCHHHHHHHHHHHHHHC---CCCchHHHHHHHH--HHHHHHhcccchhhcccchHHHHHHHHH
Confidence            999999999999998877543   1122233344444  5555544          55555555544

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=96.88  E-value=0.00014  Score=56.69  Aligned_cols=89  Identities=11%  Similarity=0.057  Sum_probs=61.8

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcC
Q 020453          215 KIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLK  294 (326)
Q Consensus       215 ~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~  294 (326)
                      .||.+....+++++|++.|++++....+              -....-.+|.+|..+|++++|++.|++++++      +
T Consensus         2 ~LG~~~~~~~~~e~ai~~~~~a~~~~p~--------------~~~~~~~la~~y~~~~~~~~A~~~~~~al~~------~   61 (150)
T 4ga2_A            2 PLGSMRRSKADVERYIASVQGSTPSPRQ--------------KSIKGFYFAKLYYEAKEYDLAKKYICTYINV------Q   61 (150)
T ss_dssp             -----CCCHHHHHHHHHHHHHHSCSHHH--------------HHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH------C
T ss_pred             HhHHHHHHcChHHHHHHHHHHhcccCcc--------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------C
Confidence            3566666667777777777776554332              1222345899999999999999999988754      6


Q ss_pred             CCchhHHhhccchhhhHHHHhHHhcCccccc
Q 020453          295 PEEAGLEQRCWNSSTTNFQKNHLNQLPKFRS  325 (326)
Q Consensus       295 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (326)
                      |.++....++  +.++..++++.+++..|++
T Consensus        62 p~~~~a~~~l--g~~~~~~~~~~~A~~~~~~   90 (150)
T 4ga2_A           62 ERDPKAHRFL--GLLYELEENTDKAVECYRR   90 (150)
T ss_dssp             TTCHHHHHHH--HHHHHHTTCHHHHHHHHHH
T ss_pred             CCCHHHHHHH--HHHHHHcCchHHHHHHHHH
Confidence            7777777777  8888888888888777765

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=96.87  E-value=0.0045  Score=47.73  Aligned_cols=94  Identities=11%  Similarity=0.068  Sum_probs=55.8

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 020453          211 VSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLES  290 (326)
Q Consensus       211 ~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  290 (326)
                      .....++.+....+++++|+..|.+++++.       +.       ....+.++|.++..+|++++|+..|++++.+   
T Consensus        48 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-------~~-------~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~---  110 (166)
T 1a17_A           48 IYYGNRSLAYLRTECYGYALGDATRAIELD-------KK-------YIKGYYRRAASNMALGKFRAALRDYETVVKV---  110 (166)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------cc-------cHHHHHHHHHHHHHhccHHHHHHHHHHHHHh---
Confidence            334456666666777777777777766541       11       1345677888888888888888887776643   


Q ss_pred             hhcCCCchhHHhhccchhhhHHHHhHHhcCcccc
Q 020453          291 LTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFR  324 (326)
Q Consensus       291 l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (326)
                         .|.+..+...+..+..+...+++.+++..|.
T Consensus       111 ---~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~  141 (166)
T 1a17_A          111 ---KPHDKDAKMKYQECNKIVKQKAFERAIAGDE  141 (166)
T ss_dssp             ---STTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ---CCCCHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence               3444443333311333444566666655543

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=96.87  E-value=0.013  Score=55.48  Aligned_cols=97  Identities=13%  Similarity=0.078  Sum_probs=65.3

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 020453          212 SLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL  291 (326)
Q Consensus       212 ~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l  291 (326)
                      ....++.+....|++++|+..|++++++       .+.+       ...+..++.++...|++++|++.|++++++....
T Consensus       443 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  508 (597)
T 2xpi_A          443 PYLFLGMQHMQLGNILLANEYLQSSYAL-------FQYD-------PLLLNELGVVAFNKSDMQTAINHFQNALLLVKKT  508 (597)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHH-------CCCC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCCC-------hHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhcc
Confidence            3445666777778888888888877654       1221       3457788999999999999999999998887654


Q ss_pred             hcCCCc-hhHHhhccchhhhHHHHhHHhcCcccc
Q 020453          292 TLKPEE-AGLEQRCWNSSTTNFQKNHLNQLPKFR  324 (326)
Q Consensus       292 ~~~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (326)
                      ..+|+. +.+...+  +..+...|++.++...|+
T Consensus       509 ~~~p~~~~~~~~~l--~~~~~~~g~~~~A~~~~~  540 (597)
T 2xpi_A          509 QSNEKPWAATWANL--GHAYRKLKMYDAAIDALN  540 (597)
T ss_dssp             CCCSGGGHHHHHHH--HHHHHHTTCHHHHHHHHH
T ss_pred             ccchhhHHHHHHHH--HHHHHHhcCHHHHHHHHH
Confidence            334543 3444555  555555556555555544

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=96.86  E-value=0.029  Score=50.89  Aligned_cols=133  Identities=10%  Similarity=0.109  Sum_probs=76.7

Q ss_pred             HHHHHHHHhCCchhHhhHHHHHHHHHHhCCCChhHHHHHHH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHh
Q 020453          170 MLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLS-----VSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAV  244 (326)
Q Consensus       170 ~~C~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~~~~i~-----~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~  244 (326)
                      .++.+....++...++..++.+..    +.+........+.     .....++.+....+++++|+..|++++++.    
T Consensus       216 ~l~~~~~~~g~~~~A~~~~~~~~~----~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~----  287 (450)
T 2y4t_A          216 KISTLYYQLGDHELSLSEVRECLK----LDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE----  287 (450)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC----
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHH----hCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----
Confidence            334455555666666666655542    2232222221111     112334777788899999999999987642    


Q ss_pred             hcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHhhccchhhhHHHHhHHhcCcccc
Q 020453          245 KRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFR  324 (326)
Q Consensus       245 ~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (326)
                         +.+.   ......+..++.++..+|++++|+..+++++.+      .|+++.+...+  +..+...+++.++...|+
T Consensus       288 ---p~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~------~p~~~~~~~~l--~~~~~~~~~~~~A~~~~~  353 (450)
T 2y4t_A          288 ---PSIA---EYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM------EPDNVNALKDR--AEAYLIEEMYDEAIQDYE  353 (450)
T ss_dssp             ---CSSH---HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH------CTTCHHHHHHH--HHHHHHTTCHHHHHHHHH
T ss_pred             ---Ccch---HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------CcccHHHHHHH--HHHHHHhcCHHHHHHHHH
Confidence               2211   112346677888888888888888888777654      34444444445  555555555555554443

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=96.86  E-value=0.024  Score=43.40  Aligned_cols=101  Identities=11%  Similarity=-0.035  Sum_probs=63.4

Q ss_pred             HHHHHHHHHHHHhCCchhHhhHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhh
Q 020453          166 AVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVK  245 (326)
Q Consensus       166 ~~l~~~C~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~  245 (326)
                      ..+..++.+....++...+....+.+...    .+..       ......++.+....+++++|+..|++++++      
T Consensus        48 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~----~~~~-------~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~------  110 (166)
T 1a17_A           48 IYYGNRSLAYLRTECYGYALGDATRAIEL----DKKY-------IKGYYRRAASNMALGKFRAALRDYETVVKV------  110 (166)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHh----Cccc-------HHHHHHHHHHHHHhccHHHHHHHHHHHHHh------
Confidence            33444445555666766666666555443    2211       234567888999999999999999998765      


Q ss_pred             cCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 020453          246 RHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLE  289 (326)
Q Consensus       246 ~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~  289 (326)
                       .+.+     ..+...-.++..+...|++++|++.+.++..+..
T Consensus       111 -~p~~-----~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~  148 (166)
T 1a17_A          111 -KPHD-----KDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVD  148 (166)
T ss_dssp             -STTC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -CCCC-----HHHHHHHHHHHHHHHHHHHHHHHHcccchHHHhc
Confidence             2221     1122222334556677888888888887776664

>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.86  E-value=0.0009  Score=45.29  Aligned_cols=47  Identities=23%  Similarity=0.655  Sum_probs=37.0

Q ss_pred             cccCCcccccccccccCCCeecccCCcchHHhHhcCCC------CCCCCcccc
Q 020453           19 FKIGPLSCMICQALLFECSKCTPCSHVYCKACISRFKD------CPLCGADIE   65 (326)
Q Consensus        19 ~~~~~l~C~iC~~~l~~~p~~l~C~h~fC~~Cl~~~~~------CP~Cr~~~~   65 (326)
                      +....-.|+||..++...-....|+|.|=..||.+|+.      ||.|+....
T Consensus        11 y~~~i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~   63 (74)
T 2ct0_A           11 YPDAVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP   63 (74)
T ss_dssp             CSSSSCBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCC
T ss_pred             ccCCCCcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCC
Confidence            34456789999999654445558999999999998863      999998765

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=96.83  E-value=0.00066  Score=50.02  Aligned_cols=57  Identities=11%  Similarity=0.040  Sum_probs=26.1

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHhhccchhhhHHHHhHHhcCccc
Q 020453          259 VSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKF  323 (326)
Q Consensus       259 ~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (326)
                      ..+.++|.++..+|++++|+..|++++.+      +|+++.+..++  +..+..+|++.+++..|
T Consensus        28 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~l--~~~~~~~g~~~~A~~~~   84 (117)
T 3k9i_A           28 ECYLGLGSTFRTLGEYRKAEAVLANGVKQ------FPNHQALRVFY--AMVLYNLGRYEQGVELL   84 (117)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHH--HHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCchHHHHHH--HHHHHHcCCHHHHHHHH
Confidence            34445555555555555555555544432      33333444444  44444444444444433

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=96.81  E-value=0.0044  Score=57.77  Aligned_cols=154  Identities=18%  Similarity=0.089  Sum_probs=97.6

Q ss_pred             HHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHh---------CCchhHhhHHHHHHHHHH
Q 020453          126 RAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAM---------GDADAAVAYFADSVEFLM  196 (326)
Q Consensus       126 ~~~~~~~~~~a~~~~~~c~~~l~~~l~~~~~~~~~C~~H~~~l~~~C~~~~~~---------h~~H~~~~~~e~~~~~~~  196 (326)
                      ..+..|++++|...+..+       +...+       . ...+..++.+....         ++...++..++.+...  
T Consensus       146 ~~~~~g~~~~A~~~~~~a-------l~~~p-------~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--  208 (474)
T 4abn_A          146 VYWKKGDVTSAHTCFSGA-------LTHCK-------N-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--  208 (474)
T ss_dssp             HHHHHTCHHHHHHHHHHH-------HTTCC-------C-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--
T ss_pred             HHHHcCCHHHHHHHHHHH-------HhhCC-------C-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh--
Confidence            455677777777666533       22211       1 13344455555444         4444455444444332  


Q ss_pred             hCCCChhHHHHHHHHHHHHHHHHHHhc--------CCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHH
Q 020453          197 KLPMDDLEIIHTLSVSLNKIGDLKYYG--------GDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVD  268 (326)
Q Consensus       197 ~L~~~~~~~~~~i~~~~~~l~~l~~~~--------~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~  268 (326)
                        .+...       .....++.+....        +++++|+..|++++++...           ..+....+.++|.++
T Consensus       209 --~p~~~-------~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-----------~~~~~~~~~~lg~~~  268 (474)
T 4abn_A          209 --DVLDG-------RSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRK-----------ASSNPDLHLNRATLH  268 (474)
T ss_dssp             --CTTCH-------HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGG-----------GGGCHHHHHHHHHHH
T ss_pred             --CCCCH-------HHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCC-----------cccCHHHHHHHHHHH
Confidence              33332       2455677777777        8899999999999876210           112356788899999


Q ss_pred             HhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHhhccchhhhHHHHhHHhcCcccc
Q 020453          269 RSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFR  324 (326)
Q Consensus       269 ~~~~~~~~a~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (326)
                      ..+|++++|++.|++++.+      +|++.....++  +.++..+++..+++..+.
T Consensus       269 ~~~g~~~~A~~~~~~al~l------~p~~~~a~~~l--~~~~~~lg~~~eAi~~~~  316 (474)
T 4abn_A          269 KYEESYGEALEGFSQAAAL------DPAWPEPQQRE--QQLLEFLSRLTSLLESKG  316 (474)
T ss_dssp             HHTTCHHHHHHHHHHHHHH------CTTCHHHHHHH--HHHHHHHHHHHHHHHHTT
T ss_pred             HHcCCHHHHHHHHHHHHHh------CCCCHHHHHHH--HHHHHHHHHHHHHHHHhc
Confidence            9999999999999988764      56666666666  777777777777665544

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=96.80  E-value=0.0023  Score=47.31  Aligned_cols=24  Identities=21%  Similarity=0.371  Sum_probs=12.3

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHH
Q 020453          214 NKIGDLKYYGGDLQAARSYYVRSL  237 (326)
Q Consensus       214 ~~l~~l~~~~~~~~~a~~~~~~sl  237 (326)
                      ..++.+....+++++|+..|++++
T Consensus        20 ~~~~~~~~~~~~~~~A~~~~~~al   43 (133)
T 2lni_A           20 KNKGNECFQKGDYPQAMKHYTEAI   43 (133)
T ss_dssp             HHHHHHHHHTTCSHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHH
Confidence            344445555555555555555544

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=96.79  E-value=0.0043  Score=52.23  Aligned_cols=27  Identities=26%  Similarity=0.130  Sum_probs=14.7

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 020453          212 SLNKIGDLKYYGGDLQAARSYYVRSLN  238 (326)
Q Consensus       212 ~~~~l~~l~~~~~~~~~a~~~~~~sl~  238 (326)
                      ....++.+....|++++|+..|+++++
T Consensus        45 ~~~~l~~~~~~~~~~~~A~~~~~~al~   71 (275)
T 1xnf_A           45 LLYERGVLYDSLGLRALARNDFSQALA   71 (275)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence            344555555555555555555555544

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=96.78  E-value=0.011  Score=46.06  Aligned_cols=125  Identities=17%  Similarity=0.161  Sum_probs=75.6

Q ss_pred             HHHHHHHHHHHhCCchhHhhHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhc
Q 020453          167 VLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKR  246 (326)
Q Consensus       167 ~l~~~C~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~  246 (326)
                      .+...+.+....++...+..+.+.+...    .+..       ......++.+....+++++|+..|+++++..      
T Consensus        44 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~----~~~~-------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~------  106 (186)
T 3as5_A           44 VALHLGIAYVKTGAVDRGTELLERSLAD----APDN-------VKVATVLGLTYVQVQKYDLAVPLLIKVAEAN------  106 (186)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTC-------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC------
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCCC-------HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC------
Confidence            3344445555667777777666655433    2222       1234567777777888888888888876651      


Q ss_pred             CCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHhhccchhhhHHHHhHHhcCcccc
Q 020453          247 HSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFR  324 (326)
Q Consensus       247 ~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (326)
                       +.+       ...+..++.++..+|++++|+..+++++..      .|....+...+  +..+...|++.++...|+
T Consensus       107 -~~~-------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~l--a~~~~~~~~~~~A~~~~~  168 (186)
T 3as5_A          107 -PIN-------FNVRFRLGVALDNLGRFDEAIDSFKIALGL------RPNEGKVHRAI--AFSYEQMGRHEEALPHFK  168 (186)
T ss_dssp             -TTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHH--HHHHHHTTCHHHHHHHHH
T ss_pred             -cHh-------HHHHHHHHHHHHHcCcHHHHHHHHHHHHhc------CccchHHHHHH--HHHHHHcCCHHHHHHHHH
Confidence             111       344566778888888888888887776543      34444444445  555555555555555443

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=96.77  E-value=0.027  Score=43.67  Aligned_cols=59  Identities=12%  Similarity=0.099  Sum_probs=33.8

Q ss_pred             HHHHHHHHhCCchhHhhHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 020453          170 MLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNV  239 (326)
Q Consensus       170 ~~C~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~  239 (326)
                      ..+......++...++..++.+....    +..       .....+++.+....+++++|+..|++++++
T Consensus        16 ~~g~~~~~~g~~~~A~~~~~~al~~~----p~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~   74 (164)
T 3sz7_A           16 SEGNAAMARKEYSKAIDLYTQALSIA----PAN-------PIYLSNRAAAYSASGQHEKAAEDAELATVV   74 (164)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHS----TTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhC----CcC-------HHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence            34444555666666666665554332    111       224456666777777777777777776654

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=96.75  E-value=0.0033  Score=45.14  Aligned_cols=59  Identities=12%  Similarity=0.166  Sum_probs=31.2

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 020453          214 NKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIK  286 (326)
Q Consensus       214 ~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~  286 (326)
                      ..++......+++++|+..|+++++..       +.+       ...+.++|.++..+|++++|+..+++++.
T Consensus         8 ~~~~~~~~~~~~~~~A~~~~~~~~~~~-------~~~-------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~   66 (118)
T 1elw_A            8 KEKGNKALSVGNIDDALQCYSEAIKLD-------PHN-------HVLYSNRSAAYAKKGDYQKAYEDGCKTVD   66 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTC-------HHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcccHHHHHHHHHHHHHHC-------CCc-------HHHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence            445555555666666666666655431       111       23344555555566666666655555443

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=96.75  E-value=0.0018  Score=55.88  Aligned_cols=89  Identities=15%  Similarity=0.137  Sum_probs=42.6

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhh
Q 020453          213 LNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLT  292 (326)
Q Consensus       213 ~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l~  292 (326)
                      ...++......|++++|+..|.+++++       .+.       ....+.++|.++..+|++++|+..+++++.      
T Consensus         7 ~~~~g~~~~~~g~~~~A~~~~~~al~~-------~p~-------~~~~~~~la~~~~~~~~~~~A~~~~~~al~------   66 (281)
T 2c2l_A            7 LKEQGNRLFVGRKYPEAAACYGRAITR-------NPL-------VAVYYTNRALCYLKMQQPEQALADCRRALE------   66 (281)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH-------CSC-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHTT------
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCc-------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHH------
Confidence            345555666666666666666666553       111       123344555555555555555544443332      


Q ss_pred             cCCCchhHHhhccchhhhHHHHhHHhcCccc
Q 020453          293 LKPEEAGLEQRCWNSSTTNFQKNHLNQLPKF  323 (326)
Q Consensus       293 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (326)
                      .+|++.....++  +..+..+|++.+++..|
T Consensus        67 ~~p~~~~~~~~l--g~~~~~~g~~~~A~~~~   95 (281)
T 2c2l_A           67 LDGQSVKAHFFL--GQCQLEMESYDEAIANL   95 (281)
T ss_dssp             SCTTCHHHHHHH--HHHHHHTTCHHHHHHHH
T ss_pred             hCCCCHHHHHHH--HHHHHHcCCHHHHHHHH
Confidence            234444444444  44444444444444433

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=96.73  E-value=0.043  Score=42.06  Aligned_cols=62  Identities=11%  Similarity=0.172  Sum_probs=48.1

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 020453          212 SLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR  287 (326)
Q Consensus       212 ~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~  287 (326)
                      ....++.+....|++++|+..|++++++       .+.+       ...+.++|.++..+|++++|+..|++++.+
T Consensus        23 ~~~~~g~~~~~~g~~~~A~~~~~~al~~-------~p~~-------~~~~~~lg~~~~~~g~~~~A~~~~~~al~l   84 (148)
T 2vgx_A           23 QLYSLAFNQYQSGXYEDAHXVFQALCVL-------DHYD-------SRFFLGLGACRQAMGQYDLAIHSYSYGAVM   84 (148)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHc-------Cccc-------HHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence            4556788888899999999999988754       2222       345567888999999999999988888765

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=96.72  E-value=0.0081  Score=54.45  Aligned_cols=67  Identities=10%  Similarity=0.067  Sum_probs=42.4

Q ss_pred             HHHHHHHHHHHHHHHHhCCchhHhhHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHH
Q 020453          162 SQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGD-LQAARSYYVRSLNV  239 (326)
Q Consensus       162 ~~H~~~l~~~C~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~~~~i~~~~~~l~~l~~~~~~-~~~a~~~~~~sl~~  239 (326)
                      +.+...+.+++.+....++...++..++.+...    .+...       .....++.+...+++ +++|+..|++++++
T Consensus        94 p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l----~P~~~-------~a~~~~g~~l~~~g~d~~eAl~~~~~al~l  161 (382)
T 2h6f_A           94 DKFRDVYDYFRAVLQRDERSERAFKLTRDAIEL----NAANY-------TVWHFRRVLLKSLQKDLHEEMNYITAIIEE  161 (382)
T ss_dssp             HHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHH----CTTCH-------HHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHh----CccCH-------HHHHHHHHHHHHcccCHHHHHHHHHHHHHH
Confidence            444555566666666677777777776655532    23222       245567777777775 88888888877664

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=96.72  E-value=0.0014  Score=53.31  Aligned_cols=123  Identities=15%  Similarity=0.075  Sum_probs=82.0

Q ss_pred             HHHHHhCCchhHhhHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCc
Q 020453          173 DCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPS  252 (326)
Q Consensus       173 ~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~  252 (326)
                      ......++...++..++.+      +.. .       .....+++.+....|++++|+..|++++++.       +.   
T Consensus        14 ~~~~~~~~~~~A~~~~~~a------~~~-~-------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-------~~---   69 (213)
T 1hh8_A           14 VLAADKKDWKGALDAFSAV------QDP-H-------SRICFNIGCMYTILKNMTEAEKAFTRSINRD-------KH---   69 (213)
T ss_dssp             HHHHHTTCHHHHHHHHHTS------SSC-C-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TT---
T ss_pred             HHHHHhCCHHHHHHHHHHH------cCC-C-------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------cc---
Confidence            3444556666666555433      222 1       2366789999999999999999999998762       22   


Q ss_pred             hhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhh----------cCCCchhHHhhccchhhhHHHHhHHhcCcc
Q 020453          253 QVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLT----------LKPEEAGLEQRCWNSSTTNFQKNHLNQLPK  322 (326)
Q Consensus       253 ~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l~----------~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (326)
                          ....+.++|.++..+|++++|++.|++++.+...-.          ..|....+..++  +..+..+|++.++...
T Consensus        70 ----~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~g~~~~A~~~  143 (213)
T 1hh8_A           70 ----LAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNI--AFMYAKKEEWKKAEEQ  143 (213)
T ss_dssp             ----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHH--HHHHHHTTCHHHHHHH
T ss_pred             ----chHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHH--HHHHHHccCHHHHHHH
Confidence                245678899999999999999999999887542211          122333455555  6666666666666665


Q ss_pred             ccc
Q 020453          323 FRS  325 (326)
Q Consensus       323 ~~~  325 (326)
                      |++
T Consensus       144 ~~~  146 (213)
T 1hh8_A          144 LAL  146 (213)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            543

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=96.71  E-value=0.0089  Score=55.69  Aligned_cols=128  Identities=13%  Similarity=0.029  Sum_probs=79.1

Q ss_pred             HHHHHHHhCCchhHhhHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCC
Q 020453          171 LGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNV  250 (326)
Q Consensus       171 ~C~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~  250 (326)
                      ++.+....++...+..+.+.+...    .+...       .....++.+....|++++|+..|++++++........   
T Consensus       350 la~~~~~~g~~~~A~~~~~~~~~~----~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~---  415 (537)
T 3fp2_A          350 LACLLYKQGKFTESEAFFNETKLK----FPTLP-------EVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIH---  415 (537)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHH----CTTCT-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCS---
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHh----CCCCh-------HHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhH---
Confidence            344444556666665555544433    12221       2445678888888999999999999888764321111   


Q ss_pred             CchhhhHHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHHHHHHhhcCCCchhHHhhccchhhhHHHHhHHhcC
Q 020453          251 PSQVLDVAVSLAKVADVDRSI----------GNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQL  320 (326)
Q Consensus       251 ~~~~~~la~~l~~l~~~~~~~----------~~~~~a~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~  320 (326)
                          .. ...+..++.++..+          |++++|+..|++++.+      +|.+..+...+  +.++..+|++.++.
T Consensus       416 ----~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~------~p~~~~~~~~l--~~~~~~~g~~~~A~  482 (537)
T 3fp2_A          416 ----VG-IGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACEL------DPRSEQAKIGL--AQLKLQMEKIDEAI  482 (537)
T ss_dssp             ----ST-THHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHH------CTTCHHHHHHH--HHHHHHTTCHHHHH
T ss_pred             ----HH-HHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHh------CCCCHHHHHHH--HHHHHHhccHHHHH
Confidence                11 12334556677776          8888888888777654      56666666666  77777777777776


Q ss_pred             ccccc
Q 020453          321 PKFRS  325 (326)
Q Consensus       321 ~~~~~  325 (326)
                      ..|++
T Consensus       483 ~~~~~  487 (537)
T 3fp2_A          483 ELFED  487 (537)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            66654

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=96.71  E-value=0.012  Score=55.76  Aligned_cols=99  Identities=15%  Similarity=0.220  Sum_probs=72.6

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 020453          212 SLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL  291 (326)
Q Consensus       212 ~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l  291 (326)
                      ....++.+....|++++|+..|++++++..+. ...+.      ..+..+..++.++...|++++|++.+++++++    
T Consensus       477 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~p~------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----  545 (597)
T 2xpi_A          477 LLNELGVVAFNKSDMQTAINHFQNALLLVKKT-QSNEK------PWAATWANLGHAYRKLKMYDAAIDALNQGLLL----  545 (597)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS-CCCSG------GGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHhhhcc-ccchh------hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh----
Confidence            45678889999999999999999998875431 11111      12567888999999999999999988877654    


Q ss_pred             hcCCCchhHHhhccchhhhHHHHhHHhcCccccc
Q 020453          292 TLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRS  325 (326)
Q Consensus       292 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (326)
                        .|+++.+...+  +.++...|+..++...|++
T Consensus       546 --~p~~~~~~~~l--~~~~~~~g~~~~A~~~~~~  575 (597)
T 2xpi_A          546 --STNDANVHTAI--ALVYLHKKIPGLAITHLHE  575 (597)
T ss_dssp             --SSCCHHHHHHH--HHHHHHTTCHHHHHHHHHH
T ss_pred             --CCCChHHHHHH--HHHHHHhCCHHHHHHHHHH
Confidence              46666666666  6666777777776666654

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=96.69  E-value=0.0029  Score=53.34  Aligned_cols=124  Identities=13%  Similarity=0.091  Sum_probs=76.9

Q ss_pred             HHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhCCchhHhhHHHHHHHHHHhCCCChhHH
Q 020453          126 RAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEI  205 (326)
Q Consensus       126 ~~~~~~~~~~a~~~~~~c~~~l~~~l~~~~~~~~~C~~H~~~l~~~C~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~  205 (326)
                      ..+..|++++|...+...       +...+..       ...+..++.+....++...++...+.+.. .   . ....+
T Consensus        12 ~~~~~~~~~~A~~~~~~~-------l~~~p~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~---~-~~~~~   72 (272)
T 3u4t_A           12 FLFKNNNYAEAIEVFNKL-------EAKKYNS-------PYIYNRRAVCYYELAKYDLAQKDIETYFS-K---V-NATKA   72 (272)
T ss_dssp             HHHTTTCHHHHHHHHHHH-------HHTTCCC-------STTHHHHHHHHHHTTCHHHHHHHHHHHHT-T---S-CTTTC
T ss_pred             HHHHhcCHHHHHHHHHHH-------HHhCCCc-------HHHHHHHHHHHHHHhhHHHHHHHHHHHHh-c---c-CchhH
Confidence            456778888887776543       2222221       22344455666677888888777666554 1   1 11111


Q ss_pred             HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 020453          206 IHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAI  285 (326)
Q Consensus       206 ~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~  285 (326)
                         .......++.+....+++++|+..|++++++.       +..       ...+..+|.++..+|++++|+..|++++
T Consensus        73 ---~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~-------~~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~al  135 (272)
T 3u4t_A           73 ---KSADFEYYGKILMKKGQDSLAIQQYQAAVDRD-------TTR-------LDMYGQIGSYFYNKGNFPLAIQYMEKQI  135 (272)
T ss_dssp             ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-------TTC-------THHHHHHHHHHHHTTCHHHHHHHHGGGC
T ss_pred             ---HHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC-------ccc-------HHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence               23445678888899999999999999987742       111       2346667777777777777776665543

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=96.69  E-value=0.013  Score=47.43  Aligned_cols=127  Identities=10%  Similarity=-0.029  Sum_probs=81.9

Q ss_pred             HHHHHHHHHHHhCCchhHhhHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhc
Q 020453          167 VLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKR  246 (326)
Q Consensus       167 ~l~~~C~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~  246 (326)
                      .+...+.+....++...+..+.+.+...    .+..       ......++.+....+++++|+..|+++++..      
T Consensus        10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~----~~~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~------   72 (225)
T 2vq2_A           10 IKTQLAMEYMRGQDYRQATASIEDALKS----DPKN-------ELAWLVRAEIYQYLKVNDKAQESFRQALSIK------   72 (225)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHh----Cccc-------hHHHHHHHHHHHHcCChHHHHHHHHHHHHhC------
Confidence            3344455666677878887777665543    2222       2345678888899999999999999987652      


Q ss_pred             CCCCCchhhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHhhcCCCchhHHhhccchhhhHHHHhHHhcCcccc
Q 020453          247 HSNVPSQVLDVAVSLAKVADVDRSI-GNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFR  324 (326)
Q Consensus       247 ~~~~~~~~~~la~~l~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (326)
                       +.       ....+..++.++... |++++|+..+++++.    ....|....+...+  +..+...++..+++..|+
T Consensus        73 -~~-------~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~~~~~~l--~~~~~~~~~~~~A~~~~~  137 (225)
T 2vq2_A           73 -PD-------SAEINNNYGWFLCGRLNRPAESMAYFDKALA----DPTYPTPYIANLNK--GICSAKQGQFGLAEAYLK  137 (225)
T ss_dssp             -TT-------CHHHHHHHHHHHHTTTCCHHHHHHHHHHHHT----STTCSCHHHHHHHH--HHHHHHTTCHHHHHHHHH
T ss_pred             -CC-------ChHHHHHHHHHHHHhcCcHHHHHHHHHHHHc----CcCCcchHHHHHHH--HHHHHHcCCHHHHHHHHH
Confidence             22       134567789999999 999999999988876    12234334444444  444444555555544443

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.69  E-value=0.0033  Score=47.50  Aligned_cols=94  Identities=19%  Similarity=0.155  Sum_probs=51.3

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 020453          212 SLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL  291 (326)
Q Consensus       212 ~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l  291 (326)
                      ....++......+++++|+..|++++++.       +.+    ......+.+++.++..+|++++|+..+++++.+    
T Consensus        30 ~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-------~~~----~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~----   94 (148)
T 2dba_A           30 QLRKEGNELFKCGDYGGALAAYTQALGLD-------ATP----QDQAVLHRNRAACHLKLEDYDKAETEASKAIEK----   94 (148)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHHHHHHHTSC-------CCH----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHc-------ccc----hHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh----
Confidence            34456666666677777777776665421       110    012445566666777777777776666665543    


Q ss_pred             hcCCCchhHHhhccchhhhHHHHhHHhcCcccc
Q 020453          292 TLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFR  324 (326)
Q Consensus       292 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (326)
                        .|.+..+..++  +.++..++++.++...|+
T Consensus        95 --~~~~~~~~~~~--a~~~~~~~~~~~A~~~~~  123 (148)
T 2dba_A           95 --DGGDVKALYRR--SQALEKLGRLDQAVLDLQ  123 (148)
T ss_dssp             --TSCCHHHHHHH--HHHHHHHTCHHHHHHHHH
T ss_pred             --CccCHHHHHHH--HHHHHHcCCHHHHHHHHH
Confidence              34444444444  555555555555544443

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=96.67  E-value=0.0039  Score=48.96  Aligned_cols=88  Identities=15%  Similarity=0.045  Sum_probs=61.8

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCH---HHHHHHHHHHHHHHHHh-hcCCCchhHHhhcc
Q 020453          230 RSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNE---DVAVDGFQEAIKRLESL-TLKPEEAGLEQRCW  305 (326)
Q Consensus       230 ~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~l-~~~p~~~~~~~~~~  305 (326)
                      ...|+++++..+...+..+.+.       ..+.++|.++..++++   ..|++.+++|+..+++. ..+|..+....++ 
T Consensus        15 ~~~feeA~~~~~~Ai~l~P~~a-------ea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~L-   86 (158)
T 1zu2_A           15 ILLFEQIRQDAENTYKSNPLDA-------DNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCI-   86 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTCH-------HHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH-
T ss_pred             HhHHHHHHHHHHHHHHHCCCCH-------HHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHH-
Confidence            3455566666666666677654       4555566666655543   45667788888888887 7789998888888 


Q ss_pred             chhhhHHHH-----------hHHhcCcccccC
Q 020453          306 NSSTTNFQK-----------NHLNQLPKFRSA  326 (326)
Q Consensus       306 ~~~~~~~~~-----------~~~~~~~~~~~~  326 (326)
                       +..+..++           ++.+++.+|++|
T Consensus        87 -G~ay~~lg~l~P~~~~a~g~~~eA~~~~~kA  117 (158)
T 1zu2_A           87 -GNAYTSFAFLTPDETEAKHNFDLATQFFQQA  117 (158)
T ss_dssp             -HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_pred             -HHHHHHhcccCcchhhhhccHHHHHHHHHHH
Confidence             88887764           788888888764

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=96.67  E-value=0.008  Score=58.78  Aligned_cols=62  Identities=16%  Similarity=0.041  Sum_probs=43.6

Q ss_pred             HHHHHHHHHHHhCCchhHhhHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 020453          167 VLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNV  239 (326)
Q Consensus       167 ~l~~~C~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~  239 (326)
                      .+...+.+....++...++..++.+....    +..       ......++.+....+++++|+..|++++++
T Consensus       435 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~----p~~-------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l  496 (681)
T 2pzi_A          435 LPLMEVRALLDLGDVAKATRKLDDLAERV----GWR-------WRLVWYRAVAELLTGDYDSATKHFTEVLDT  496 (681)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHH----CCC-------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhccC----cch-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            33444556667788888877776665442    222       235567888899999999999999998875

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=96.67  E-value=0.012  Score=55.00  Aligned_cols=115  Identities=11%  Similarity=0.147  Sum_probs=79.2

Q ss_pred             HhCCchhHhhHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhh
Q 020453          177 AMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLD  256 (326)
Q Consensus       177 ~~h~~H~~~~~~e~~~~~~~~L~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~  256 (326)
                      ..++..+++..++.+.+.    .+..       .....+++.+...++++++|+..|++++++       .+.       
T Consensus        18 ~~g~~~~A~~~~~~Al~~----~p~~-------~~~~~~lg~~~~~~g~~~~A~~~~~~al~l-------~p~-------   72 (477)
T 1wao_1           18 KAKDYENAIKFYSQAIEL----NPSN-------AIYYGNRSLAYLRTECYGYALGDATRAIEL-------DKK-------   72 (477)
T ss_dssp             TTTCHHHHHHHHHHHHHH----CTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHS-------CTT-------
T ss_pred             HhCCHHHHHHHHHHHHHh----CCcc-------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-------CCC-------
Confidence            455666777666665544    2222       346678999999999999999999999876       222       


Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHhhccchhh--hHHHHhHHhcCcccc
Q 020453          257 VAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSST--TNFQKNHLNQLPKFR  324 (326)
Q Consensus       257 la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~  324 (326)
                      .+..+.++|.++..+|++++|++.|++++++      +|++......+  +.+  +...+++.+++..|+
T Consensus        73 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~------~p~~~~~~~~l--~~~~~~~~~g~~~~A~~~~~  134 (477)
T 1wao_1           73 YIKGYYRRAASNMALGKFRAALRDYETVVKV------KPHDKDAKMKY--QECNKIVKQKAFERAIAGDE  134 (477)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH------STTCTTHHHHH--HHHHHHHHHHHHCCC-----
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHH--HHHHHHHHHHHHHHHhcccc
Confidence            2457788999999999999999999988765      45555555555  444  555678888877766

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=96.66  E-value=0.0077  Score=50.65  Aligned_cols=127  Identities=10%  Similarity=0.048  Sum_probs=89.0

Q ss_pred             HHHHHHHHhCCchhHhhHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCC
Q 020453          170 MLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSN  249 (326)
Q Consensus       170 ~~C~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~  249 (326)
                      .++.+....++...++.+++.+...    .+....       ....++.+....+++++|+..|+++++.-     ....
T Consensus         8 ~~a~~~~~~~~~~~A~~~~~~~l~~----~p~~~~-------~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-----~~~~   71 (272)
T 3u4t_A            8 RYADFLFKNNNYAEAIEVFNKLEAK----KYNSPY-------IYNRRAVCYYELAKYDLAQKDIETYFSKV-----NATK   71 (272)
T ss_dssp             HHHHHHHTTTCHHHHHHHHHHHHHT----TCCCST-------THHHHHHHHHHTTCHHHHHHHHHHHHTTS-----CTTT
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHh----CCCcHH-------HHHHHHHHHHHHhhHHHHHHHHHHHHhcc-----Cchh
Confidence            3445555677777787777665533    332222       34567888889999999999999986521     1111


Q ss_pred             CCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHhhccchhhhHHHHhHHhcCcccccC
Q 020453          250 VPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRSA  326 (326)
Q Consensus       250 ~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (326)
                            ..+..+..+|.++..+|++++|++.|++++.+      +|..+.+...+  +..+..+|++.+++..|++|
T Consensus        72 ------~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~------~~~~~~~~~~l--~~~~~~~~~~~~A~~~~~~a  134 (272)
T 3u4t_A           72 ------AKSADFEYYGKILMKKGQDSLAIQQYQAAVDR------DTTRLDMYGQI--GSYFYNKGNFPLAIQYMEKQ  134 (272)
T ss_dssp             ------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------STTCTHHHHHH--HHHHHHTTCHHHHHHHHGGG
T ss_pred             ------HHHHHHHHHHHHHHHcccHHHHHHHHHHHHhc------CcccHHHHHHH--HHHHHHccCHHHHHHHHHHH
Confidence                  13556788999999999999999999888763      45566666667  77777788888887777653

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=96.64  E-value=0.021  Score=49.11  Aligned_cols=134  Identities=19%  Similarity=0.127  Sum_probs=89.3

Q ss_pred             HHHHHHHHHHHHhCCchhHhhHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhh
Q 020453          166 AVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVK  245 (326)
Q Consensus       166 ~~l~~~C~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~  245 (326)
                      ..+..++.+....++...+..+.+.+...    .+..       ......++.+....+++++|+..|++++++.     
T Consensus       173 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~----~~~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-----  236 (327)
T 3cv0_A          173 QLHASLGVLYNLSNNYDSAAANLRRAVEL----RPDD-------AQLWNKLGATLANGNRPQEALDAYNRALDIN-----  236 (327)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHh----CCCc-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----
Confidence            34445556666778888887777665543    2222       2345678889999999999999999987652     


Q ss_pred             cCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh-hcCCC-----chhHHhhccchhhhHHHHhHHhc
Q 020453          246 RHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL-TLKPE-----EAGLEQRCWNSSTTNFQKNHLNQ  319 (326)
Q Consensus       246 ~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l-~~~p~-----~~~~~~~~~~~~~~~~~~~~~~~  319 (326)
                        +.       ....+..++.++..+|++++|+..+++++.+.... ...+.     ...+...+  +..+..+|+..++
T Consensus       237 --~~-------~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~g~~~~A  305 (327)
T 3cv0_A          237 --PG-------YVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFF--RMLLNVMNRPDLV  305 (327)
T ss_dssp             --TT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHH--HHHHHHTTCHHHH
T ss_pred             --CC-------CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHH--HHHHHhcCCHHHH
Confidence              22       13456788999999999999999999998775432 10110     33444555  6666666777766


Q ss_pred             CcccccC
Q 020453          320 LPKFRSA  326 (326)
Q Consensus       320 ~~~~~~~  326 (326)
                      ...|++|
T Consensus       306 ~~~~~~~  312 (327)
T 3cv0_A          306 ELTYAQN  312 (327)
T ss_dssp             HHHTTCC
T ss_pred             HHHHHHH
Confidence            6666543

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=96.63  E-value=0.045  Score=46.91  Aligned_cols=88  Identities=10%  Similarity=-0.012  Sum_probs=51.7

Q ss_pred             HHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhCCchhHhhHHHHHHHHHHhCCCChhHH
Q 020453          126 RAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEI  205 (326)
Q Consensus       126 ~~~~~~~~~~a~~~~~~c~~~l~~~l~~~~~~~~~C~~H~~~l~~~C~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~  205 (326)
                      ..+..|++++|...+...-       ...       +.....+...+.+....++...+....+.+...    .+..   
T Consensus        30 ~~~~~~~~~~A~~~~~~~~-------~~~-------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~----~~~~---   88 (327)
T 3cv0_A           30 SMLKLANLAEAALAFEAVC-------QAA-------PEREEAWRSLGLTQAENEKDGLAIIALNHARML----DPKD---   88 (327)
T ss_dssp             HHHHTTCHHHHHHHHHHHH-------HHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTC---
T ss_pred             HHHHhccHHHHHHHHHHHH-------HhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CcCC---
Confidence            4567788888877665331       111       222333444555666677777777666655543    2222   


Q ss_pred             HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 020453          206 IHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLN  238 (326)
Q Consensus       206 ~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~  238 (326)
                          ......++.+....+++++|+..|+++++
T Consensus        89 ----~~~~~~la~~~~~~~~~~~A~~~~~~~~~  117 (327)
T 3cv0_A           89 ----IAVHAALAVSHTNEHNANAALASLRAWLL  117 (327)
T ss_dssp             ----HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             ----HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence                12345567777777788888777777665

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=96.63  E-value=0.12  Score=38.87  Aligned_cols=62  Identities=15%  Similarity=0.164  Sum_probs=49.6

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 020453          212 SLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR  287 (326)
Q Consensus       212 ~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~  287 (326)
                      ..-.++......|++++|+..|+++++.       .+.+       ...+..+|.++..+|++++|+..|++++.+
T Consensus        20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~-------~p~~-------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~   81 (142)
T 2xcb_A           20 QLYALGFNQYQAGKWDDAQKIFQALCML-------DHYD-------ARYFLGLGACRQSLGLYEQALQSYSYGALM   81 (142)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccHHHHHHHHHHHHHh-------CCcc-------HHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence            4456788888999999999999998754       2332       345667899999999999999999988765

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=96.60  E-value=0.026  Score=51.18  Aligned_cols=100  Identities=21%  Similarity=0.094  Sum_probs=53.4

Q ss_pred             HHHHHHHHHhCCchhHhhHHHHHHHHHHhCCCChh---HHHHHHHH-----HHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 020453          169 GMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDL---EIIHTLSV-----SLNKIGDLKYYGGDLQAARSYYVRSLNVR  240 (326)
Q Consensus       169 ~~~C~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~---~~~~~i~~-----~~~~l~~l~~~~~~~~~a~~~~~~sl~~~  240 (326)
                      ..++.+....++...+..+++.+.    ++.+...   .....+..     ....++.+....+++++|+..|++++++.
T Consensus        98 ~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~  173 (450)
T 2y4t_A           98 LQRGHLLLKQGKLDEAEDDFKKVL----KSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC  173 (450)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHH----TSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHH----hcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            334455555666666665554433    2333333   22222211     23344666777889999999888887631


Q ss_pred             HHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 020453          241 RDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIK  286 (326)
Q Consensus       241 ~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~  286 (326)
                             +.       ....+..++.++...|++++|+..|++++.
T Consensus       174 -------~~-------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  205 (450)
T 2y4t_A          174 -------VW-------DAELRELRAECFIKEGEPRKAISDLKAASK  205 (450)
T ss_dssp             -------TT-------CHHHHHHHHHHHHHTTCGGGGHHHHHHHHH
T ss_pred             -------CC-------ChHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence                   11       123344555555566666666555555543

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=96.58  E-value=0.011  Score=49.05  Aligned_cols=60  Identities=5%  Similarity=0.080  Sum_probs=35.6

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHhhccchhhhHHHHhHHhcCcccc
Q 020453          257 VAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFR  324 (326)
Q Consensus       257 la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (326)
                      ....+..++.++..+|++++|+..+++++..      .|.+..+...+  +.++...++..++...|+
T Consensus       140 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~l--a~~~~~~g~~~~A~~~~~  199 (252)
T 2ho1_A          140 RSRVFENLGLVSLQMKKPAQAKEYFEKSLRL------NRNQPSVALEM--ADLLYKEREYVPARQYYD  199 (252)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CSCCHHHHHHH--HHHHHHTTCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------CcccHHHHHHH--HHHHHHcCCHHHHHHHHH
Confidence            3455566677777777777777666655432      34444455555  555556666666655554

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=96.57  E-value=0.031  Score=39.60  Aligned_cols=65  Identities=8%  Similarity=0.138  Sum_probs=53.9

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 020453          212 SLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLES  290 (326)
Q Consensus       212 ~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  290 (326)
                      ....++.+....|++++|+..|++++++       .+..       ...+.++|.++..+|++++|++.|++++.+...
T Consensus         9 ~~~~lg~~~~~~g~~~~A~~~~~~al~~-------~p~~-------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~   73 (100)
T 3ma5_A            9 TRYALAQEHLKHDNASRALALFEELVET-------DPDY-------VGTYYHLGKLYERLDRTDDAIDTYAQGIEVARE   73 (100)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH-------STTC-------THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCCc-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhc
Confidence            4567889999999999999999999775       2332       235778899999999999999999999988754

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=96.56  E-value=0.0097  Score=48.57  Aligned_cols=98  Identities=13%  Similarity=0.181  Sum_probs=60.6

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHHHHHhh-----cCCCCCchhhhHHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 020453          216 IGDLKYYGGDLQAARSYYVRSLNVRRDAVK-----RHSNVPSQVLDVAV-SLAKVADVDRSIGNEDVAVDGFQEAIKRLE  289 (326)
Q Consensus       216 l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~-----~~~~~~~~~~~la~-~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~  289 (326)
                      .+......|++++|+..|++++++.-....     ......    .+.. ...++|.++..+|++++|+..|++++++  
T Consensus        10 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--   83 (208)
T 3urz_A           10 KVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNS----EISSKLATELALAYKKNRNYDKAYLFYKELLQK--   83 (208)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTS----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchh----hhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--
Confidence            445556789999999999999886432111     011111    1111 2234888888899988888888877654  


Q ss_pred             HhhcCCCchhHHhhccchhhhHHHHhHHhcCccccc
Q 020453          290 SLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRS  325 (326)
Q Consensus       290 ~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (326)
                          +|.++....++  +.++..+|++.+++..|++
T Consensus        84 ----~p~~~~~~~~l--g~~~~~~g~~~~A~~~~~~  113 (208)
T 3urz_A           84 ----APNNVDCLEAC--AEMQVCRGQEKDALRMYEK  113 (208)
T ss_dssp             ----CTTCHHHHHHH--HHHHHHHTCHHHHHHHHHH
T ss_pred             ----CCCCHHHHHHH--HHHHHHcCCHHHHHHHHHH
Confidence                45555555555  5556666666665555543

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=96.54  E-value=0.027  Score=38.39  Aligned_cols=74  Identities=24%  Similarity=0.391  Sum_probs=56.1

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 020453          211 VSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLES  290 (326)
Q Consensus       211 ~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  290 (326)
                      .....++.+....+++++|+..|++++++.       +.+       ...+.++|.++..+|++++|+..+++++.+   
T Consensus        10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-------~~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~---   72 (91)
T 1na3_A           10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-------PNN-------AEAWYNLGNAYYKQGDYDEAIEYYQKALEL---   72 (91)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhcC-------CCC-------HHHHHHHHHHHHHHhhHHHHHHHHHHHHhc---
Confidence            455678888899999999999999998652       221       345678899999999999999999888764   


Q ss_pred             hhcCCCchhHHhhc
Q 020453          291 LTLKPEEAGLEQRC  304 (326)
Q Consensus       291 l~~~p~~~~~~~~~  304 (326)
                         +|.+.....++
T Consensus        73 ---~p~~~~~~~~l   83 (91)
T 1na3_A           73 ---DPNNAEAKQNL   83 (91)
T ss_dssp             ---CTTCHHHHHHH
T ss_pred             ---CCCCHHHHHHH
Confidence               45555444444

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=96.50  E-value=0.011  Score=42.78  Aligned_cols=24  Identities=33%  Similarity=0.681  Sum_probs=12.1

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHH
Q 020453          215 KIGDLKYYGGDLQAARSYYVRSLN  238 (326)
Q Consensus       215 ~l~~l~~~~~~~~~a~~~~~~sl~  238 (326)
                      .++.+....+++++|+..|+++++
T Consensus        14 ~~~~~~~~~~~~~~A~~~~~~~~~   37 (125)
T 1na0_A           14 NLGNAYYKQGDYDEAIEYYQKALE   37 (125)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHH
Confidence            444444455555555555555443

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=96.49  E-value=0.19  Score=40.65  Aligned_cols=60  Identities=15%  Similarity=0.170  Sum_probs=50.0

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 020453          214 NKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR  287 (326)
Q Consensus       214 ~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~  287 (326)
                      .+++.+....|++++|+..|++++++       .+.+       ...+.++|.++..+|++++|+..|++++.+
T Consensus        58 ~~lg~~~~~~g~~~~A~~~~~~al~~-------~p~~-------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  117 (208)
T 3urz_A           58 TELALAYKKNRNYDKAYLFYKELLQK-------APNN-------VDCLEACAEMQVCRGQEKDALRMYEKILQL  117 (208)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHH-------CTTC-------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHH-------CCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence            45899999999999999999998775       2332       456788999999999999999999988764

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=96.46  E-value=0.11  Score=37.59  Aligned_cols=100  Identities=14%  Similarity=0.215  Sum_probs=71.0

Q ss_pred             HHHHHHHHhCCchhHhhHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCC
Q 020453          170 MLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSN  249 (326)
Q Consensus       170 ~~C~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~  249 (326)
                      ..+......++...++.+++.+...    .+..       ......++.+....+++++|+..|++++++.....    .
T Consensus         9 ~l~~~~~~~~~~~~A~~~~~~a~~~----~~~~-------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~----~   73 (131)
T 1elr_A            9 ELGNDAYKKKDFDTALKHYDKAKEL----DPTN-------MTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENR----E   73 (131)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHH----CTTC-------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHST----T
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHhc----CCcc-------HHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccc----h
Confidence            3445555677777777777665543    2222       23456788888999999999999999988754311    1


Q ss_pred             CCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 020453          250 VPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR  287 (326)
Q Consensus       250 ~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~  287 (326)
                         ........+.++|.++..+|++++|++.|++++.+
T Consensus        74 ---~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  108 (131)
T 1elr_A           74 ---DYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE  108 (131)
T ss_dssp             ---CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             ---hHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence               11233567788999999999999999999988764

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=96.42  E-value=0.15  Score=36.66  Aligned_cols=64  Identities=22%  Similarity=0.260  Sum_probs=47.4

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 020453          210 SVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR  287 (326)
Q Consensus       210 ~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~  287 (326)
                      ......++.+....+++++|+..|+++++.       .+.+       ...+..+|.++...|++++|+..+++++.+
T Consensus        12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-------~~~~-------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~   75 (131)
T 2vyi_A           12 AERLKTEGNEQMKVENFEAAVHFYGKAIEL-------NPAN-------AVYFCNRAAAYSKLGNYAGAVQDCERAICI   75 (131)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHccCHHHHHHHHHHHHHc-------CCCC-------HHHHHHHHHHHHHhhchHHHHHHHHHHHhc
Confidence            345566777888888999999999888764       1211       345667788888889999998888887764

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=96.41  E-value=0.00098  Score=62.39  Aligned_cols=92  Identities=11%  Similarity=0.076  Sum_probs=73.2

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhh
Q 020453          213 LNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLT  292 (326)
Q Consensus       213 ~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l~  292 (326)
                      ...++......+++++|+..|++++++       .+.       .+..+.++|.++..+|++++|++.|++++++     
T Consensus         9 ~~~lg~~~~~~g~~~~A~~~~~~Al~~-------~p~-------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l-----   69 (477)
T 1wao_1            9 LKTQANDYFKAKDYENAIKFYSQAIEL-------NPS-------NAIYYGNRSLAYLRTECYGYALGDATRAIEL-----   69 (477)
T ss_dssp             SSSSSSSTTTTTCHHHHHHHHHHHHHH-------CTT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS-----
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHh-------CCc-------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----
Confidence            345566667789999999999999876       222       2567889999999999999999999888754     


Q ss_pred             cCCCchhHHhhccchhhhHHHHhHHhcCcccccC
Q 020453          293 LKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRSA  326 (326)
Q Consensus       293 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (326)
                       +|.++....++  +..+..++++.+|+..|++|
T Consensus        70 -~p~~~~~~~~l--g~~~~~~g~~~eA~~~~~~a  100 (477)
T 1wao_1           70 -DKKYIKGYYRR--AASNMALGKFRAALRDYETV  100 (477)
T ss_dssp             -CTTCHHHHHHH--HHHHHHHTCHHHHHHHHHHH
T ss_pred             -CCCCHHHHHHH--HHHHHHcCCHHHHHHHHHHH
Confidence             67777777778  88888888888888777653

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=96.41  E-value=0.006  Score=54.20  Aligned_cols=110  Identities=12%  Similarity=0.013  Sum_probs=74.4

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCC-CCC-chhhh-HHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 020453          209 LSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHS-NVP-SQVLD-VAVSLAKVADVDRSIGNEDVAVDGFQEAI  285 (326)
Q Consensus       209 i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~-~~~-~~~~~-la~~l~~l~~~~~~~~~~~~a~~~~~~~~  285 (326)
                      .......++......+++++|+..|++++++......... ... ..... ....+.++|.++..+|++++|+..+++++
T Consensus       178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al  257 (338)
T 2if4_A          178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVL  257 (338)
T ss_dssp             HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            3455677888888999999999999999886433221000 000 00000 11367789999999999999999998887


Q ss_pred             HHHHHhhcCCCchhHHhhccchhhhHHHHhHHhcCcccccC
Q 020453          286 KRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRSA  326 (326)
Q Consensus       286 ~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (326)
                      .+      +|.++....++  +..+..++++.++...|++|
T Consensus       258 ~~------~p~~~~a~~~l--g~a~~~~g~~~~A~~~l~~a  290 (338)
T 2if4_A          258 TE------EEKNPKALFRR--GKAKAELGQMDSARDDFRKA  290 (338)
T ss_dssp             HH------CTTCHHHHHHH--HHHHHTTTCHHHHHHHHHHT
T ss_pred             Hh------CCCCHHHHHHH--HHHHHHcCCHHHHHHHHHHH
Confidence            54      46666666666  77777777777777666543

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=96.39  E-value=0.048  Score=39.83  Aligned_cols=98  Identities=13%  Similarity=0.128  Sum_probs=70.9

Q ss_pred             HHHHHHHHHHHHHhCCchhHhhHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHh
Q 020453          165 GAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAV  244 (326)
Q Consensus       165 ~~~l~~~C~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~  244 (326)
                      ...+...+......++...++..++.+...    .+..       ......++.+....+++++|+..|++++++.    
T Consensus        16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~----~~~~-------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~----   80 (133)
T 2lni_A           16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKR----NPKD-------AKLYSNRAACYTKLLEFQLALKDCEECIQLE----   80 (133)
T ss_dssp             HHHHHHHHHHHHHTTCSHHHHHHHHHHHTT----CTTC-------HHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC----
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCc-------HHHHHHHHHHHHHhccHHHHHHHHHHHHHhC----
Confidence            344445556666778888888777665432    2222       2345678888889999999999999988752    


Q ss_pred             hcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 020453          245 KRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR  287 (326)
Q Consensus       245 ~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~  287 (326)
                         +.       ....+.++|.++..+|++++|+..+++++.+
T Consensus        81 ---~~-------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  113 (133)
T 2lni_A           81 ---PT-------FIKGYTRKAAALEAMKDYTKAMDVYQKALDL  113 (133)
T ss_dssp             ---TT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             ---CC-------chHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence               22       1346778899999999999999999887754

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=96.39  E-value=0.0024  Score=45.48  Aligned_cols=88  Identities=9%  Similarity=0.091  Sum_probs=60.7

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhc
Q 020453          214 NKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTL  293 (326)
Q Consensus       214 ~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l~~  293 (326)
                      ..++.+....+++++|+..|++++++.       +.+       ...+.++|.++..+|++++|+..+++++.+      
T Consensus        10 ~~~~~~~~~~~~~~~A~~~~~~a~~~~-------~~~-------~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~------   69 (112)
T 2kck_A           10 YLEGVLQYDAGNYTESIDLFEKAIQLD-------PEE-------SKYWLMKGKALYNLERYEEAVDCYNYVINV------   69 (112)
T ss_dssp             GGHHHHHHSSCCHHHHHHHHHHHHHHC-------CCC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT------
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHhC-------cCC-------HHHHHHHHHHHHHccCHHHHHHHHHHHHHh------
Confidence            467788888999999999999987652       221       345678899999999999999988877653      


Q ss_pred             CCC--chhHHhhccchhhhHHH-HhHHhcCccc
Q 020453          294 KPE--EAGLEQRCWNSSTTNFQ-KNHLNQLPKF  323 (326)
Q Consensus       294 ~p~--~~~~~~~~~~~~~~~~~-~~~~~~~~~~  323 (326)
                      .|.  ...+..++  +..+..+ +++.+++.+|
T Consensus        70 ~~~~~~~~~~~~l--~~~~~~~~~~~~~A~~~~  100 (112)
T 2kck_A           70 IEDEYNKDVWAAK--ADALRYIEGKEVEAEIAE  100 (112)
T ss_dssp             SCCTTCHHHHHHH--HHHHTTCSSCSHHHHHHH
T ss_pred             CcccchHHHHHHH--HHHHHHHhCCHHHHHHHH
Confidence            444  44444444  4444445 5444444443

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=96.31  E-value=0.024  Score=40.75  Aligned_cols=77  Identities=16%  Similarity=0.189  Sum_probs=59.3

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcC
Q 020453          215 KIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLK  294 (326)
Q Consensus       215 ~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~  294 (326)
                      .||......++|..|+..|+++++......  .     .-......+..+|.++..+|+++.|+.++++++.      ..
T Consensus        10 ~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~--~-----~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~------l~   76 (104)
T 2v5f_A           10 ELGKVAYTEADYYHTELWMEQALRQLDEGE--I-----STIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE------LD   76 (104)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHTTC--C-----CSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------HC
T ss_pred             HHHHHHHHccchHHHHHHHHHHHHhhhccC--C-----CcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh------cC
Confidence            689999999999999999999987653211  0     1123566788999999999999999999888765      36


Q ss_pred             CCchhHHhhc
Q 020453          295 PEEAGLEQRC  304 (326)
Q Consensus       295 p~~~~~~~~~  304 (326)
                      |.+..++.++
T Consensus        77 P~~~~~~~n~   86 (104)
T 2v5f_A           77 PEHQRANGNL   86 (104)
T ss_dssp             TTCHHHHHHH
T ss_pred             CCCHHHHhhH
Confidence            7776666655

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=96.27  E-value=0.046  Score=39.68  Aligned_cols=118  Identities=19%  Similarity=0.313  Sum_probs=67.4

Q ss_pred             HHHHHhCCchhHhhHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCc
Q 020453          173 DCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPS  252 (326)
Q Consensus       173 ~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~  252 (326)
                      .+....++...+..+.+.+...    .+..       ......++.+....+++++|+..|+++++..       +..  
T Consensus         9 ~~~~~~~~~~~A~~~~~~~~~~----~~~~-------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-------~~~--   68 (136)
T 2fo7_A            9 NAYYKQGDYDEAIEYYQKALEL----DPRS-------AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-------PRS--   68 (136)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHH----CTTC-------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-------TTC--
T ss_pred             HHHHHcCcHHHHHHHHHHHHHc----CCcc-------hhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-------CCc--
Confidence            3344556666666665554332    1211       1234556777777888888888888876541       111  


Q ss_pred             hhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHhhccchhhhHHHHhHHhcCccc
Q 020453          253 QVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKF  323 (326)
Q Consensus       253 ~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (326)
                           ...+..++.++...|++++|+..+++++.+      .|....+...+  +..+...++..++...|
T Consensus        69 -----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~l--a~~~~~~~~~~~A~~~~  126 (136)
T 2fo7_A           69 -----AEAWYNLGNAYYKQGDYDEAIEYYQKALEL------DPRSAEAWYNL--GNAYYKQGDYDEAIEYY  126 (136)
T ss_dssp             -----HHHHHHHHHHHHTTTCHHHHHHHHHHHHHH------CTTCHHHHHHH--HHHHHTTTCHHHHHHHH
T ss_pred             -----hHHHHHHHHHHHHhcCHHHHHHHHHHHHHh------CCCChHHHHHH--HHHHHHHccHHHHHHHH
Confidence                 234566788888888888888887776653      33333333334  44444444554444443

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=96.26  E-value=0.03  Score=52.05  Aligned_cols=92  Identities=9%  Similarity=0.085  Sum_probs=59.3

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 020453          212 SLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL  291 (326)
Q Consensus       212 ~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l  291 (326)
                      ....++.+....+++++|+..|++++++       .+.+       ...+..+|.++...|++++|+..+++++.+    
T Consensus       312 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~-------~~~~-------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~----  373 (537)
T 3fp2_A          312 TYYHRGQMYFILQDYKNAKEDFQKAQSL-------NPEN-------VYPYIQLACLLYKQGKFTESEAFFNETKLK----  373 (537)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CTTC-------SHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHh-------CCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----
Confidence            3445666666667777777766666553       1111       234566788888888888888777766543    


Q ss_pred             hcCCCchhHHhhccchhhhHHHHhHHhcCccccc
Q 020453          292 TLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRS  325 (326)
Q Consensus       292 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (326)
                        .|.+..+...+  +..+...|++.++...|++
T Consensus       374 --~~~~~~~~~~l--~~~~~~~g~~~~A~~~~~~  403 (537)
T 3fp2_A          374 --FPTLPEVPTFF--AEILTDRGDFDTAIKQYDI  403 (537)
T ss_dssp             --CTTCTHHHHHH--HHHHHHTTCHHHHHHHHHH
T ss_pred             --CCCChHHHHHH--HHHHHHhCCHHHHHHHHHH
Confidence              45666666666  7777777777777766654

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=96.22  E-value=0.019  Score=47.05  Aligned_cols=125  Identities=10%  Similarity=0.124  Sum_probs=80.7

Q ss_pred             HHHHHHHHHHHHhCCchhHhhHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhh
Q 020453          166 AVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVK  245 (326)
Q Consensus       166 ~~l~~~C~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~  245 (326)
                      ..+..++.+....++...+....+.+...    .+..       ......++.+....+++++|+..|++++++.     
T Consensus        58 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~----~~~~-------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-----  121 (243)
T 2q7f_A           58 IPYINFANLLSSVNELERALAFYDKALEL----DSSA-------ATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-----  121 (243)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-----
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCcc-------hHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-----
Confidence            34445556666778888887777665543    2222       2345678888889999999999999987652     


Q ss_pred             cCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHhhccchhhhHHHHhHHhcCccc
Q 020453          246 RHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKF  323 (326)
Q Consensus       246 ~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (326)
                        +.+       ...+..++.++..+|++++|+..+++++.+      .|.+..+...+  +..+...+++.++...|
T Consensus       122 --~~~-------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~l--~~~~~~~~~~~~A~~~~  182 (243)
T 2q7f_A          122 --MEN-------GDLFYMLGTVLVKLEQPKLALPYLQRAVEL------NENDTEARFQF--GMCLANEGMLDEALSQF  182 (243)
T ss_dssp             --CCS-------HHHHHHHHHHHHHTSCHHHHHHHHHHHHHH------CTTCHHHHHHH--HHHHHHHTCCHHHHHHH
T ss_pred             --CCC-------HHHHHHHHHHHHHhccHHHHHHHHHHHHHh------CCccHHHHHHH--HHHHHHcCCHHHHHHHH
Confidence              221       335677899999999999999999888754      33333334334  44444444444444333

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=96.14  E-value=0.017  Score=53.28  Aligned_cols=97  Identities=13%  Similarity=0.031  Sum_probs=62.0

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHHH
Q 020453          212 SLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRS---IGNEDVAVDGFQEAIKRL  288 (326)
Q Consensus       212 ~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~---~~~~~~a~~~~~~~~~~~  288 (326)
                      ....++.+....|++++|+..|++++++........        ..+..+..+|.++..   .|++++|+..+++++.+ 
T Consensus       374 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~-  444 (514)
T 2gw1_A          374 VPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIY--------VGIAPLVGKATLLTRNPTVENFIEATNLLEKASKL-  444 (514)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCS--------SCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHH--------HHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHh-
Confidence            445678888889999999999999877643211100        112356677888888   88888888888777653 


Q ss_pred             HHhhcCCCchhHHhhccchhhhHHHHhHHhcCcccc
Q 020453          289 ESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFR  324 (326)
Q Consensus       289 ~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (326)
                           .|........+  +.++...|+..++...|+
T Consensus       445 -----~~~~~~~~~~l--a~~~~~~g~~~~A~~~~~  473 (514)
T 2gw1_A          445 -----DPRSEQAKIGL--AQMKLQQEDIDEAITLFE  473 (514)
T ss_dssp             -----CTTCHHHHHHH--HHHHHHTTCHHHHHHHHH
T ss_pred             -----CcccHHHHHHH--HHHHHHhcCHHHHHHHHH
Confidence                 34444444444  555555555555555544

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=96.13  E-value=0.039  Score=46.59  Aligned_cols=88  Identities=17%  Similarity=0.212  Sum_probs=50.0

Q ss_pred             HHHHHHHHHHh----cCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHh----cCCHHHHHHHHHH
Q 020453          212 SLNKIGDLKYY----GGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRS----IGNEDVAVDGFQE  283 (326)
Q Consensus       212 ~~~~l~~l~~~----~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~----~~~~~~a~~~~~~  283 (326)
                      ....++.+...    .+++++|+..|+++++.                .....+.++|.++..    .+++++|+.+|++
T Consensus        76 a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~----------------~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~  139 (273)
T 1ouv_A           76 GCHLLGNLYYSGQGVSQNTNKALQYYSKACDL----------------KYAEGCASLGGIYHDGKVVTRDFKKAVEYFTK  139 (273)
T ss_dssp             HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----------------TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc----------------CCccHHHHHHHHHHcCCCcccCHHHHHHHHHH
Confidence            44556666666    66666666666665432                013456677777777    7777777777776


Q ss_pred             HHHHHHHhhcCCCchhHHhhccchhhhHH----HHhHHhcCccccc
Q 020453          284 AIKRLESLTLKPEEAGLEQRCWNSSTTNF----QKNHLNQLPKFRS  325 (326)
Q Consensus       284 ~~~~~~~l~~~p~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~  325 (326)
                      +++.      .  ......++  +.++..    .++..+++..|++
T Consensus       140 a~~~------~--~~~a~~~l--g~~~~~~~~~~~~~~~A~~~~~~  175 (273)
T 1ouv_A          140 ACDL------N--DGDGCTIL--GSLYDAGRGTPKDLKKALASYDK  175 (273)
T ss_dssp             HHHT------T--CHHHHHHH--HHHHHHTSSSCCCHHHHHHHHHH
T ss_pred             HHhc------C--cHHHHHHH--HHHHHcCCCCCCCHHHHHHHHHH
Confidence            6542      1  22333334  444444    4555555555543

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=96.05  E-value=0.099  Score=45.25  Aligned_cols=132  Identities=14%  Similarity=0.094  Sum_probs=77.1

Q ss_pred             HHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhCCchhHhhHHHHHHHHHHhCCCChhHH
Q 020453          126 RAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEI  205 (326)
Q Consensus       126 ~~~~~~~~~~a~~~~~~c~~~l~~~l~~~~~~~~~C~~H~~~l~~~C~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~  205 (326)
                      ..+..|++++|...+...-       ..       .|.....+...+.+....++...+....+.+...    .+...  
T Consensus        12 ~~~~~g~~~~A~~~~~~~l-------~~-------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~----~~~~~--   71 (359)
T 3ieg_A           12 KLLAAGQLADALSQFHAAV-------DG-------DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIAL----KMDFT--   71 (359)
T ss_dssp             HHHHTTCHHHHHHHHHHHH-------HH-------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----CTTCH--
T ss_pred             HHHHcCCHHHHHHHHHHHH-------hh-------CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh----CCCcc--
Confidence            4567888888887775432       11       2222344555667777788888888777766544    22222  


Q ss_pred             HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhH-----HHHHHHHHHHHHhcCCHHHHHHH
Q 020453          206 IHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDV-----AVSLAKVADVDRSIGNEDVAVDG  280 (326)
Q Consensus       206 ~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~l-----a~~l~~l~~~~~~~~~~~~a~~~  280 (326)
                           .....++.+....+++++|+..|++++++.....    .+......+     ......++.++...|++++|++.
T Consensus        72 -----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~  142 (359)
T 3ieg_A           72 -----AARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQ----EEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITF  142 (359)
T ss_dssp             -----HHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             -----hHHHHHHHHHHHcCChHHHHHHHHHHHhcCCccc----ChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence                 3456788888899999999999998876422000    111111111     11222335666666776666666


Q ss_pred             HHHHHH
Q 020453          281 FQEAIK  286 (326)
Q Consensus       281 ~~~~~~  286 (326)
                      +++++.
T Consensus       143 ~~~~~~  148 (359)
T 3ieg_A          143 LDKILE  148 (359)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            665543

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=96.04  E-value=0.078  Score=44.66  Aligned_cols=90  Identities=10%  Similarity=0.156  Sum_probs=67.0

Q ss_pred             HHHHHHHHHHHHh----cCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHh----cCCHHHHHHHH
Q 020453          210 SVSLNKIGDLKYY----GGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRS----IGNEDVAVDGF  281 (326)
Q Consensus       210 ~~~~~~l~~l~~~----~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~----~~~~~~a~~~~  281 (326)
                      ......++.+...    .+++++|+..|+++++.       .         ......+++.++..    .+++++|+.+|
T Consensus       110 ~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-------~---------~~~a~~~lg~~~~~~~~~~~~~~~A~~~~  173 (273)
T 1ouv_A          110 AEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL-------N---------DGDGCTILGSLYDAGRGTPKDLKKALASY  173 (273)
T ss_dssp             HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-------T---------CHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred             ccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc-------C---------cHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence            3466788999988    99999999999998763       1         14678899999998    99999999999


Q ss_pred             HHHHHHHHHhhcCCCchhHHhhccchhhhHH----HHhHHhcCccccc
Q 020453          282 QEAIKRLESLTLKPEEAGLEQRCWNSSTTNF----QKNHLNQLPKFRS  325 (326)
Q Consensus       282 ~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~  325 (326)
                      +++++.        .......++  +.++..    .+++.+++..|++
T Consensus       174 ~~a~~~--------~~~~a~~~l--g~~~~~g~~~~~~~~~A~~~~~~  211 (273)
T 1ouv_A          174 DKACDL--------KDSPGCFNA--GNMYHHGEGATKNFKEALARYSK  211 (273)
T ss_dssp             HHHHHT--------TCHHHHHHH--HHHHHHTCSSCCCHHHHHHHHHH
T ss_pred             HHHHHC--------CCHHHHHHH--HHHHHcCCCCCccHHHHHHHHHH
Confidence            988753        123444455  566666    6677777766654

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=96.04  E-value=0.047  Score=39.69  Aligned_cols=65  Identities=14%  Similarity=0.067  Sum_probs=53.7

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 020453          210 SVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRL  288 (326)
Q Consensus       210 ~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~  288 (326)
                      ......++.+....+++++|+..|++++++       .+.+       ...+.++|.++..+|++++|+..+++++.+.
T Consensus        27 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-------~p~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~   91 (117)
T 3k9i_A           27 AECYLGLGSTFRTLGEYRKAEAVLANGVKQ-------FPNH-------QALRVFYAMVLYNLGRYEQGVELLLKIIAET   91 (117)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CTTC-------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCCc-------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            456778999999999999999999998766       2332       4567789999999999999999999887653

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=96.03  E-value=0.014  Score=47.25  Aligned_cols=88  Identities=13%  Similarity=-0.009  Sum_probs=67.7

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhh
Q 020453          213 LNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLT  292 (326)
Q Consensus       213 ~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l~  292 (326)
                      .-.++......+++++|+..|++++         ..        ....+.++|.++..+|++++|++.|++++.+     
T Consensus         9 ~~~~g~~~~~~~~~~~A~~~~~~a~---------~~--------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----   66 (213)
T 1hh8_A            9 LWNEGVLAADKKDWKGALDAFSAVQ---------DP--------HSRICFNIGCMYTILKNMTEAEKAFTRSINR-----   66 (213)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTSS---------SC--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHc---------CC--------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----
Confidence            3567888888999999999998873         11        1356788999999999999999999988765     


Q ss_pred             cCCCchhHHhhccchhhhHHHHhHHhcCccccc
Q 020453          293 LKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRS  325 (326)
Q Consensus       293 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (326)
                       +|..+....++  +.++..++++.+++..|++
T Consensus        67 -~~~~~~~~~~l--g~~~~~~~~~~~A~~~~~~   96 (213)
T 1hh8_A           67 -DKHLAVAYFQR--GMLYYQTEKYDLAIKDLKE   96 (213)
T ss_dssp             -CTTCHHHHHHH--HHHHHHTTCHHHHHHHHHH
T ss_pred             -CccchHHHHHH--HHHHHHcccHHHHHHHHHH
Confidence             46666666667  7777777777777766654

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=96.02  E-value=0.016  Score=42.54  Aligned_cols=60  Identities=17%  Similarity=0.148  Sum_probs=29.6

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 020453          215 KIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAI  285 (326)
Q Consensus       215 ~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~  285 (326)
                      .++.+....|++++|+..|+++++.       .+.+.    .....+.++|.++..+|++++|+..|++++
T Consensus        44 ~lg~~~~~~~~~~~A~~~~~~~~~~-------~p~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~~~  103 (129)
T 2xev_A           44 WLGESYYATRNFQLAEAQFRDLVSR-------YPTHD----KAAGGLLKLGLSQYGEGKNTEAQQTLQQVA  103 (129)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHH-------CTTST----THHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHH-------CCCCc----ccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            4455555555555555555555432       11111    123445555666666666555555555444

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=95.97  E-value=0.15  Score=37.59  Aligned_cols=98  Identities=12%  Similarity=-0.010  Sum_probs=73.4

Q ss_pred             HHHHHHHHHHhCCchhHhhHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcC
Q 020453          168 LGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRH  247 (326)
Q Consensus       168 l~~~C~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~  247 (326)
                      +...+......++...++..+..+....    +..       ......++.+....+++++|+..|++++++.       
T Consensus        12 ~~~~g~~~~~~~~~~~A~~~~~~al~~~----~~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-------   73 (137)
T 3q49_B           12 LKEQGNRLFVGRKYPEAAACYGRAITRN----PLV-------AVYYTNRALCYLKMQQPEQALADCRRALELD-------   73 (137)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------
T ss_pred             HHHHHHHHHHhCcHHHHHHHHHHHHhhC----cCc-------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-------
Confidence            3344555667788888877776655442    222       2356788999999999999999999988752       


Q ss_pred             CCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 020453          248 SNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLES  290 (326)
Q Consensus       248 ~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  290 (326)
                      +.       ....+.++|.++..+|++++|+..|++++.+-..
T Consensus        74 p~-------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~  109 (137)
T 3q49_B           74 GQ-------SVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE  109 (137)
T ss_dssp             TT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             ch-------hHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChh
Confidence            22       2456778999999999999999999999988755

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=95.88  E-value=0.025  Score=43.87  Aligned_cols=92  Identities=12%  Similarity=0.052  Sum_probs=64.1

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 020453          211 VSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLES  290 (326)
Q Consensus       211 ~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  290 (326)
                      .....++.+....+++++|+..|++++++       .+.       ....+..++.++...|++++|++.+++++.+   
T Consensus        43 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-------~~~-------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---  105 (186)
T 3as5_A           43 DVALHLGIAYVKTGAVDRGTELLERSLAD-------APD-------NVKVATVLGLTYVQVQKYDLAVPLLIKVAEA---  105 (186)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CTT-------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhc-------CCC-------CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc---
Confidence            34567888888999999999999998765       122       1345677899999999999999998887754   


Q ss_pred             hhcCCCchhHHhhccchhhhHHHHhHHhcCcccc
Q 020453          291 LTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFR  324 (326)
Q Consensus       291 l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (326)
                         .|.+..+...+  +..+...++..++...|+
T Consensus       106 ---~~~~~~~~~~~--a~~~~~~~~~~~A~~~~~  134 (186)
T 3as5_A          106 ---NPINFNVRFRL--GVALDNLGRFDEAIDSFK  134 (186)
T ss_dssp             ---CTTCHHHHHHH--HHHHHHTTCHHHHHHHHH
T ss_pred             ---CcHhHHHHHHH--HHHHHHcCcHHHHHHHHH
Confidence               34444444444  455555555555555443

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=95.79  E-value=0.023  Score=44.55  Aligned_cols=27  Identities=15%  Similarity=0.304  Sum_probs=16.7

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 020453          213 LNKIGDLKYYGGDLQAARSYYVRSLNV  239 (326)
Q Consensus       213 ~~~l~~l~~~~~~~~~a~~~~~~sl~~  239 (326)
                      ...++.+....+++++|+..|++++++
T Consensus        47 ~~~lg~~~~~~~~~~~A~~~~~~al~~   73 (177)
T 2e2e_A           47 WALLGEYYLWQNDYSNSLLAYRQALQL   73 (177)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence            345566666666666666666666553

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=95.79  E-value=0.013  Score=55.61  Aligned_cols=93  Identities=17%  Similarity=0.154  Sum_probs=72.2

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 020453          211 VSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLES  290 (326)
Q Consensus       211 ~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  290 (326)
                      .....++.+....+++++|+..|++++++       .+.       ....+.++|.++..+|++++|++.|++++++   
T Consensus        24 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~-------~p~-------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---   86 (568)
T 2vsy_A           24 VAWLMLADAELGMGDTTAGEMAVQRGLAL-------HPG-------HPEAVARLGRVRWTQQRHAEAAVLLQQASDA---   86 (568)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHTT-------STT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCC-------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---
Confidence            35667888888999999999999998764       222       2456788999999999999999999988764   


Q ss_pred             hhcCCCchhHHhhccchhhhHHHHhHHhcCccccc
Q 020453          291 LTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRS  325 (326)
Q Consensus       291 l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (326)
                         +|++.....++  +..+..++++.++...|++
T Consensus        87 ---~p~~~~~~~~l--a~~~~~~g~~~~A~~~~~~  116 (568)
T 2vsy_A           87 ---APEHPGIALWL--GHALEDAGQAEAAAAAYTR  116 (568)
T ss_dssp             ---CTTCHHHHHHH--HHHHHHTTCHHHHHHHHHH
T ss_pred             ---CCCCHHHHHHH--HHHHHHcCCHHHHHHHHHH
Confidence               56666666667  7777777777777766654

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=95.78  E-value=0.067  Score=38.53  Aligned_cols=65  Identities=12%  Similarity=0.102  Sum_probs=53.7

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 020453          212 SLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLES  290 (326)
Q Consensus       212 ~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  290 (326)
                      ....++.+....+++++|+..|++++++       .+.       ....+.++|.++..+|++++|+..|++++.+...
T Consensus        21 ~~~~lg~~~~~~g~~~~A~~~~~~al~~-------~p~-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~   85 (115)
T 2kat_A           21 LRFTLGKTYAEHEQFDAALPHLRAALDF-------DPT-------YSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQS   85 (115)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CTT-------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHH-------CCC-------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence            4568899999999999999999999865       222       1346678899999999999999999999887654

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.62  E-value=0.14  Score=38.05  Aligned_cols=97  Identities=15%  Similarity=0.129  Sum_probs=68.8

Q ss_pred             HHHHHHHHHhCCchhHhhHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCC
Q 020453          169 GMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHS  248 (326)
Q Consensus       169 ~~~C~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~  248 (326)
                      ...+......++...++..++.+..    +.+..    .........++.+....+++++|+..|++++++       .+
T Consensus        32 ~~~a~~~~~~~~~~~A~~~~~~a~~----~~~~~----~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-------~~   96 (148)
T 2dba_A           32 RKEGNELFKCGDYGGALAAYTQALG----LDATP----QDQAVLHRNRAACHLKLEDYDKAETEASKAIEK-------DG   96 (148)
T ss_dssp             HHHHHHHHTTTCHHHHHHHHHHHHT----SCCCH----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------TS
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHH----Hcccc----hHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh-------Cc
Confidence            3344555567777777776665542    23322    123456678899999999999999999998765       22


Q ss_pred             CCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 020453          249 NVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR  287 (326)
Q Consensus       249 ~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~  287 (326)
                      .+       ...+.++|.++..+|++++|+..|++++.+
T Consensus        97 ~~-------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~  128 (148)
T 2dba_A           97 GD-------VKALYRRSQALEKLGRLDQAVLDLQRCVSL  128 (148)
T ss_dssp             CC-------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             cC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence            21       345678899999999999999998887754

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=95.61  E-value=0.069  Score=45.87  Aligned_cols=129  Identities=7%  Similarity=-0.047  Sum_probs=81.1

Q ss_pred             HHHHHHHhCCchhHhhHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH------------
Q 020453          171 LGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLN------------  238 (326)
Q Consensus       171 ~C~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~------------  238 (326)
                      ........++...+...++.+...    .+...       .....++.+....|++++|+..|+++++            
T Consensus       123 ~a~~~~~~g~~~~A~~~~~~al~~----~P~~~-------~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~  191 (287)
T 3qou_A          123 QAMQLMQESNYTDALPLLXDAWQL----SNQNG-------EIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVA  191 (287)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHH----TTSCH-------HHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHH
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHh----CCcch-------hHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHH
Confidence            344445667777777666655433    23232       2455778888888999999888887533            


Q ss_pred             ---------------HHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCc--hhHH
Q 020453          239 ---------------VRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEE--AGLE  301 (326)
Q Consensus       239 ---------------~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~p~~--~~~~  301 (326)
                                     ..++.....+.+       .....++|.++...|++++|++.|.+++.+      +|+.  ....
T Consensus       192 ~~~l~~~~~~~~a~~~l~~al~~~P~~-------~~~~~~la~~l~~~g~~~~A~~~l~~~l~~------~p~~~~~~a~  258 (287)
T 3qou_A          192 QIELLXQAADTPEIQQLQQQVAENPED-------AALATQLALQLHQVGRNEEALELLFGHLRX------DLTAADGQTR  258 (287)
T ss_dssp             HHHHHHHHTSCHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTGGGGHHH
T ss_pred             HHHHHhhcccCccHHHHHHHHhcCCcc-------HHHHHHHHHHHHHcccHHHHHHHHHHHHhc------ccccccchHH
Confidence                           112222223332       345667899999999999999888776653      4444  4566


Q ss_pred             hhccchhhhHHHHhHHhcCccccc
Q 020453          302 QRCWNSSTTNFQKNHLNQLPKFRS  325 (326)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~~~  325 (326)
                      .++  +.++..+|+...+...|++
T Consensus       259 ~~l--~~~~~~~g~~~~a~~~~r~  280 (287)
T 3qou_A          259 XTF--QEILAALGTGDALASXYRR  280 (287)
T ss_dssp             HHH--HHHHHHHCTTCHHHHHHHH
T ss_pred             HHH--HHHHHHcCCCCcHHHHHHH
Confidence            666  6677777666666555543

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=95.54  E-value=0.041  Score=50.65  Aligned_cols=92  Identities=16%  Similarity=0.243  Sum_probs=57.1

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 020453          210 SVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLE  289 (326)
Q Consensus       210 ~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~  289 (326)
                      ......++......|++++|+..|+++++..       +.        ...+.++|.++..+|++++|+..+++++.+  
T Consensus         6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-------p~--------~~~~~~la~~~~~~g~~~~A~~~~~~al~~--   68 (514)
T 2gw1_A            6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK-------ED--------PVFYSNLSACYVSVGDLKKVVEMSTKALEL--   68 (514)
T ss_dssp             HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-------CC--------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-------cc--------HHHHHhHHHHHHHHhhHHHHHHHHHHHhcc--
Confidence            3455567777777788888888888776652       11        345666777777777777777777666542  


Q ss_pred             HhhcCCCchhHHhhccchhhhHHHHhHHhcCcccc
Q 020453          290 SLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFR  324 (326)
Q Consensus       290 ~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (326)
                          +|.+......+  +.++..+|++.++...|+
T Consensus        69 ----~p~~~~~~~~l--~~~~~~~g~~~~A~~~~~   97 (514)
T 2gw1_A           69 ----KPDYSKVLLRR--ASANEGLGKFADAMFDLS   97 (514)
T ss_dssp             ----CSCCHHHHHHH--HHHHHHTTCHHHHHHHHH
T ss_pred             ----ChHHHHHHHHH--HHHHHHHhhHHHHHHHHH
Confidence                45554444444  555555555555554443

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=95.53  E-value=0.065  Score=47.36  Aligned_cols=107  Identities=13%  Similarity=0.044  Sum_probs=71.7

Q ss_pred             HHHHHHHHHHHhCCchhHhhHHHHHHHHHHh------CCCChhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 020453          167 VLGMLGDCCRAMGDADAAVAYFADSVEFLMK------LPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVR  240 (326)
Q Consensus       167 ~l~~~C~~~~~~h~~H~~~~~~e~~~~~~~~------L~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~  240 (326)
                      .+...+......++...++..++.+......      ++...............+++.+...++++++|+..|.+++++.
T Consensus       181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~  260 (338)
T 2if4_A          181 RRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEE  260 (338)
T ss_dssp             HHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            3444555555667788888777766643211      0000011112222467789999999999999999999998752


Q ss_pred             HHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 020453          241 RDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR  287 (326)
Q Consensus       241 ~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~  287 (326)
                             +.       ....+.++|.++..+|++++|+..|++++.+
T Consensus       261 -------p~-------~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l  293 (338)
T 2if4_A          261 -------EK-------NPKALFRRGKAKAELGQMDSARDDFRKAQKY  293 (338)
T ss_dssp             -------TT-------CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-
T ss_pred             -------CC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence                   22       2456788999999999999999988877654

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=95.53  E-value=0.35  Score=35.01  Aligned_cols=63  Identities=14%  Similarity=0.128  Sum_probs=45.8

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 020453          214 NKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR  287 (326)
Q Consensus       214 ~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~  287 (326)
                      -.++......+++++|+..|++.++..       +.+.    .....+-++|.++..+|++++|+..|++++..
T Consensus         6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-------p~~~----~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~   68 (129)
T 2xev_A            6 YNVAFDALKNGKYDDASQLFLSFLELY-------PNGV----YTPNALYWLGESYYATRNFQLAEAQFRDLVSR   68 (129)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHC-------SSST----THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHC-------CCCc----ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            356777788899999999999987642       2211    12345667888888899999999888877653

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=95.46  E-value=0.036  Score=40.28  Aligned_cols=61  Identities=23%  Similarity=0.399  Sum_probs=46.8

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 020453          213 LNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR  287 (326)
Q Consensus       213 ~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~  287 (326)
                      ...++.+....+++++|+..|+++++.       .+..       ...+..++.++...|++++|+..+++++..
T Consensus         4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~-------~~~~-------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~   64 (136)
T 2fo7_A            4 WYNLGNAYYKQGDYDEAIEYYQKALEL-------DPRS-------AEAWYNLGNAYYKQGDYDEAIEYYQKALEL   64 (136)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHH-------CTTC-------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCcHHHHHHHHHHHHHc-------CCcc-------hhHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence            456777888889999999999998754       1221       345667888899999999999998887654

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=95.44  E-value=0.19  Score=43.27  Aligned_cols=63  Identities=19%  Similarity=0.110  Sum_probs=39.2

Q ss_pred             hcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHH
Q 020453          222 YGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLE  301 (326)
Q Consensus       222 ~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~p~~~~~~  301 (326)
                      ..+++++|+..|+++++.       .+.+       ...+.++|.++..+|++++|.+.|++++.+      +|+++.++
T Consensus       178 ~~~~~~eA~~~~~~~l~~-------~p~~-------~~~~~~la~~~~~~g~~~eA~~~l~~al~~------~p~~~~~l  237 (291)
T 3mkr_A          178 GGEKLQDAYYIFQEMADK-------CSPT-------LLLLNGQAACHMAQGRWEAAEGVLQEALDK------DSGHPETL  237 (291)
T ss_dssp             CTTHHHHHHHHHHHHHHH-------SCCC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHH
T ss_pred             CchHHHHHHHHHHHHHHh-------CCCc-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHH
Confidence            345666666666666543       2221       345677788888888888888777766643      45555555


Q ss_pred             hhc
Q 020453          302 QRC  304 (326)
Q Consensus       302 ~~~  304 (326)
                      .++
T Consensus       238 ~~l  240 (291)
T 3mkr_A          238 INL  240 (291)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            544

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=95.43  E-value=0.23  Score=34.92  Aligned_cols=91  Identities=14%  Similarity=0.230  Sum_probs=64.6

Q ss_pred             HHHHHHHhCCchhHhhHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCC
Q 020453          171 LGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNV  250 (326)
Q Consensus       171 ~C~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~  250 (326)
                      .+......++...++...+.+...    .+..       ......++.+....+++++|+..|++++++.       +. 
T Consensus        10 ~~~~~~~~~~~~~A~~~~~~~~~~----~~~~-------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-------~~-   70 (118)
T 1elw_A           10 KGNKALSVGNIDDALQCYSEAIKL----DPHN-------HVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-------PD-   70 (118)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHH----CTTC-------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-------TT-
T ss_pred             HHHHHHHcccHHHHHHHHHHHHHH----CCCc-------HHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-------cc-
Confidence            344555677778887777665543    2222       2345678888888999999999999987652       22 


Q ss_pred             CchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 020453          251 PSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIK  286 (326)
Q Consensus       251 ~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~  286 (326)
                            ....+.++|.++..+|++++|+..+++++.
T Consensus        71 ------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~  100 (118)
T 1elw_A           71 ------WGKGYSRKAAALEFLNRFEEAKRTYEEGLK  100 (118)
T ss_dssp             ------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             ------cHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence                  134567889999999999999988876653

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=95.35  E-value=0.47  Score=33.56  Aligned_cols=104  Identities=25%  Similarity=0.444  Sum_probs=70.2

Q ss_pred             HHHHHHHHhCCchhHhhHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCC
Q 020453          170 MLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSN  249 (326)
Q Consensus       170 ~~C~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~  249 (326)
                      .++.+....++...+..+.+.+...    .+..       ......++.+....+++++|+..|+++++.       .+.
T Consensus        14 ~~~~~~~~~~~~~~A~~~~~~~~~~----~~~~-------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-------~~~   75 (125)
T 1na0_A           14 NLGNAYYKQGDYDEAIEYYQKALEL----DPNN-------AEAWYNLGNAYYKQGDYDEAIEYYQKALEL-------DPN   75 (125)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHH----CTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CTT
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHH----CcCc-------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-------CCc
Confidence            3445555667777777776665543    2211       224567888888999999999999998764       122


Q ss_pred             CCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHhhc
Q 020453          250 VPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRC  304 (326)
Q Consensus       250 ~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~p~~~~~~~~~  304 (326)
                      +       ...+..++.++...|++++|+..+++++.+      .|.+..+...+
T Consensus        76 ~-------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~l  117 (125)
T 1na0_A           76 N-------AEAWYNLGNAYYKQGDYDEAIEYYQKALEL------DPNNAEAKQNL  117 (125)
T ss_dssp             C-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHH
T ss_pred             c-------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh------CCCcHHHHHHH
Confidence            1       345678899999999999999988877653      45554444433

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=95.33  E-value=0.042  Score=49.69  Aligned_cols=66  Identities=5%  Similarity=-0.069  Sum_probs=42.2

Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCC-HHHHHHHHHHHH
Q 020453          207 HTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGN-EDVAVDGFQEAI  285 (326)
Q Consensus       207 ~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~-~~~a~~~~~~~~  285 (326)
                      ..-......++.+....+++++|+..|++++++.       +.+       ...+.++|.++..+|+ +++|+..|++++
T Consensus        94 p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-------P~~-------~~a~~~~g~~l~~~g~d~~eAl~~~~~al  159 (382)
T 2h6f_A           94 DKFRDVYDYFRAVLQRDERSERAFKLTRDAIELN-------AAN-------YTVWHFRRVLLKSLQKDLHEEMNYITAII  159 (382)
T ss_dssp             HHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-------TTC-------HHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-------ccC-------HHHHHHHHHHHHHcccCHHHHHHHHHHHH
Confidence            3345567778888888999999999999887642       221       2344455555555554 555555555554


Q ss_pred             H
Q 020453          286 K  286 (326)
Q Consensus       286 ~  286 (326)
                      .
T Consensus       160 ~  160 (382)
T 2h6f_A          160 E  160 (382)
T ss_dssp             H
T ss_pred             H
Confidence            4

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=95.30  E-value=0.3  Score=40.56  Aligned_cols=98  Identities=15%  Similarity=0.104  Sum_probs=70.6

Q ss_pred             HHHHHHHHHHHHHhCCchhHhhHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHh
Q 020453          165 GAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAV  244 (326)
Q Consensus       165 ~~~l~~~C~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~  244 (326)
                      ...+...+.+....++...+...++.+...    .+..       ......++.+....+++++|+..|++++++.    
T Consensus        43 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~----~~~~-------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~----  107 (275)
T 1xnf_A           43 AQLLYERGVLYDSLGLRALARNDFSQALAI----RPDM-------PEVFNYLGIYLTQAGNFDAAYEAFDSVLELD----  107 (275)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CCCC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHc----CCCc-------HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC----
Confidence            345555667777778888888777766553    2222       2245678888899999999999999988752    


Q ss_pred             hcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 020453          245 KRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR  287 (326)
Q Consensus       245 ~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~  287 (326)
                         +.+       ...+..+|.++..+|++++|+..+++++.+
T Consensus       108 ---~~~-------~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  140 (275)
T 1xnf_A          108 ---PTY-------NYAHLNRGIALYYGGRDKLAQDDLLAFYQD  140 (275)
T ss_dssp             ---TTC-------THHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             ---ccc-------cHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence               221       245677888889999999999888887653

>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}

Probab=95.21  E-value=0.0041  Score=54.50  Aligned_cols=43  Identities=26%  Similarity=0.572  Sum_probs=33.6

Q ss_pred             CCcccccccccccCC----Ce----ecccCCcchHHhHhcCC---------------CCCCCCcccc
Q 020453           22 GPLSCMICQALLFEC----SK----CTPCSHVYCKACISRFK---------------DCPLCGADIE   65 (326)
Q Consensus        22 ~~l~C~iC~~~l~~~----p~----~l~C~h~fC~~Cl~~~~---------------~CP~Cr~~~~   65 (326)
                      +...|+||...+ .+    |.    ...|+|.|=..||.+|+               .||.||..+.
T Consensus       307 ~~~ECaICys~~-l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs  372 (381)
T 3k1l_B          307 EELRCNICFAYR-LDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS  372 (381)
T ss_dssp             SCCSCSSSCCSS-CTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred             CCccCcccceee-cCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence            556899999984 43    21    24799999999999985               2999998766

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=95.19  E-value=0.035  Score=47.77  Aligned_cols=97  Identities=10%  Similarity=0.042  Sum_probs=69.5

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHH--------
Q 020453          213 LNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEA--------  284 (326)
Q Consensus       213 ~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~--------  284 (326)
                      .-.++......|++++|+..|+++++.       .+.+       ...+..+|.++..+|++++|+..++++        
T Consensus       120 ~~~~a~~~~~~g~~~~A~~~~~~al~~-------~P~~-------~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~  185 (287)
T 3qou_A          120 XAQQAMQLMQESNYTDALPLLXDAWQL-------SNQN-------GEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTR  185 (287)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH-------TTSC-------HHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHH
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHh-------CCcc-------hhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchH
Confidence            346777778889999999999998664       3332       345677888888899999998887764        


Q ss_pred             -------------------HHHHHHh-hcCCCchhHHhhccchhhhHHHHhHHhcCccccc
Q 020453          285 -------------------IKRLESL-TLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRS  325 (326)
Q Consensus       285 -------------------~~~~~~l-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (326)
                                         +..+++. ..+|+++.+..++  +..+...|++.+++..|++
T Consensus       186 ~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~l--a~~l~~~g~~~~A~~~l~~  244 (287)
T 3qou_A          186 YQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQL--ALQLHQVGRNEEALELLFG  244 (287)
T ss_dssp             HHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHH--HHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHH--HHHHHHcccHHHHHHHHHH
Confidence                               2334443 5578887777777  7777777777777665543

>2csv_A Tripartite motif protein 29; ZF-B_BOX domain, TRIM29, ataxia-telangiectasia group D-associated protein, ATDC, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1

Probab=94.92  E-value=0.0011  Score=44.84  Aligned_cols=42  Identities=12%  Similarity=0.088  Sum_probs=35.3

Q ss_pred             HHHHHHHHHHHHHH---------HHHHHhCCchhHhhHHHHHHHHHHhCCC
Q 020453          159 ELCSQLGAVLGMLG---------DCCRAMGDADAAVAYFADSVEFLMKLPM  200 (326)
Q Consensus       159 ~~C~~H~~~l~~~C---------~~~~~~h~~H~~~~~~e~~~~~~~~L~~  200 (326)
                      ..|+.|++.+++||         .|....|++|.++++.+++...+.+|..
T Consensus        19 ~~C~~H~e~l~lfC~~d~~~iC~~C~~~~H~~H~~~~l~ea~~~~k~~L~~   69 (72)
T 2csv_A           19 RKCPVHGKTMELFCQTDQTCICYLCMFQEHKNHSTVTVEEAKAEKETESGP   69 (72)
T ss_dssp             CBCTTTCCBCCEEESSSCCEECHHHHHTTTSSSCEEEHHHHHHHHSSCCCC
T ss_pred             CcCcccCCceEEEeCCCCeEEccccCCCCCCCCCEecHHHHHHHHHHHHHH
Confidence            57999999999999         4444568889999999999998887765

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=94.91  E-value=0.11  Score=36.15  Aligned_cols=58  Identities=17%  Similarity=0.137  Sum_probs=45.2

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 020453          216 IGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAV-SLAKVADVDRSIGNEDVAVDGFQEAIKR  287 (326)
Q Consensus       216 l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~-~l~~l~~~~~~~~~~~~a~~~~~~~~~~  287 (326)
                      .+......+++++|+..|++++++       .+.+       .. .+.++|.++..+|++++|++.|++++.+
T Consensus         6 ~a~~~~~~~~~~~A~~~~~~al~~-------~p~~-------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~   64 (99)
T 2kc7_A            6 TIKELINQGDIENALQALEEFLQT-------EPVG-------KDEAYYLMGNAYRKLGDWQKALNNYQSAIEL   64 (99)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHH-------CSST-------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHH-------CCCc-------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence            455667788999999999988764       2322       34 6778899999999999999999888754

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=94.82  E-value=0.13  Score=43.08  Aligned_cols=98  Identities=12%  Similarity=0.035  Sum_probs=65.3

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 020453          212 SLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL  291 (326)
Q Consensus       212 ~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l  291 (326)
                      ..-.++......|++++|+..|++.++.       .+.+.    .....+-++|.++..+|++++|+..|++++.+.   
T Consensus        17 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~-------~p~~~----~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~---   82 (261)
T 3qky_A           17 EAFERAMEFYNQGKYDRAIEYFKAVFTY-------GRTHE----WAADAQFYLARAYYQNKEYLLAASEYERFIQIY---   82 (261)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHGGG-------CSCST----THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHh-------CCCCc----chHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHC---
Confidence            3446777788899999999999887543       23321    234567789999999999999999998877653   


Q ss_pred             hcCCCchhHHhhccchhhhHH--------HHhHHhcCccccc
Q 020453          292 TLKPEEAGLEQRCWNSSTTNF--------QKNHLNQLPKFRS  325 (326)
Q Consensus       292 ~~~p~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~  325 (326)
                      ..+|........+  +..+..        +++..+++..|++
T Consensus        83 p~~~~~~~a~~~l--g~~~~~~~~~~~~~~~~~~~A~~~~~~  122 (261)
T 3qky_A           83 QIDPRVPQAEYER--AMCYYKLSPPYELDQTDTRKAIEAFQL  122 (261)
T ss_dssp             TTCTTHHHHHHHH--HHHHHHHCCCTTSCCHHHHHHHHHHHH
T ss_pred             CCCchhHHHHHHH--HHHHHHhcccccccchhHHHHHHHHHH
Confidence            1233333344444  555544        6666666665543

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=94.66  E-value=0.13  Score=37.66  Aligned_cols=91  Identities=10%  Similarity=-0.006  Sum_probs=64.3

Q ss_pred             HHHHHHhCCchhHhhHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 020453          172 GDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVP  251 (326)
Q Consensus       172 C~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~  251 (326)
                      +......++...++...+.+...    .+..       ......++.+....|++++|+..|++++++       .+.+ 
T Consensus        24 g~~~~~~g~~~~A~~~~~~al~~----~P~~-------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l-------~P~~-   84 (121)
T 1hxi_A           24 GLSMLKLANLAEAALAFEAVCQK----EPER-------EEAWRSLGLTQAENEKDGLAIIALNHARML-------DPKD-   84 (121)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHH----STTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CTTC-
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHH----CCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCCC-
Confidence            34445667777777666655443    2322       234567888999999999999999998775       3332 


Q ss_pred             chhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 020453          252 SQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR  287 (326)
Q Consensus       252 ~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~  287 (326)
                            ...+.++|.++..+|++++|+..|++++.+
T Consensus        85 ------~~~~~~la~~~~~~g~~~~A~~~~~~al~~  114 (121)
T 1hxi_A           85 ------IAVHAALAVSHTNEHNANAALASLRAWLLS  114 (121)
T ss_dssp             ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             ------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence                  345677899999999999999888877653

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=94.63  E-value=0.055  Score=52.79  Aligned_cols=99  Identities=9%  Similarity=-0.041  Sum_probs=64.4

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH---
Q 020453          212 SLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRL---  288 (326)
Q Consensus       212 ~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~---  288 (326)
                      ....++.+....|++++|+..|++++++.       +.+       ...+.++|.++..+|++++|++.|++++++-   
T Consensus       435 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-------p~~-------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~  500 (681)
T 2pzi_A          435 LPLMEVRALLDLGDVAKATRKLDDLAERV-------GWR-------WRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGE  500 (681)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHH-------CCC-------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhccC-------cch-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence            34566777888899999999999987652       221       3456677788888888888888887777541   


Q ss_pred             -----------------------HHh-hcCCCchhHHhhccchhhhHHHHhHHhcCcccccC
Q 020453          289 -----------------------ESL-TLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRSA  326 (326)
Q Consensus       289 -----------------------~~l-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (326)
                                             ++. ..+|.++....++  +.++..+|++.+++..|++|
T Consensus       501 ~~~~~~lg~~~~~~g~~~~~~~~~~al~~~P~~~~a~~~l--g~~~~~~g~~~~A~~~~~~a  560 (681)
T 2pzi_A          501 LAPKLALAATAELAGNTDEHKFYQTVWSTNDGVISAAFGL--ARARSAEGDRVGAVRTLDEV  560 (681)
T ss_dssp             SHHHHHHHHHHHHHTCCCTTCHHHHHHHHCTTCHHHHHHH--HHHHHHTTCHHHHHHHHHTS
T ss_pred             hHHHHHHHHHHHHcCChHHHHHHHHHHHhCCchHHHHHHH--HHHHHHcCCHHHHHHHHHhh
Confidence                                   111 2345555555555  55566666666666665543

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=94.59  E-value=0.054  Score=38.04  Aligned_cols=92  Identities=20%  Similarity=0.099  Sum_probs=64.4

Q ss_pred             HHHHHHHhCCchhHhhHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCC
Q 020453          171 LGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNV  250 (326)
Q Consensus       171 ~C~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~  250 (326)
                      .+.+....++...++..++.+...    .+...       .....++.+....+++++|+..|++++++.       +. 
T Consensus        12 ~~~~~~~~~~~~~A~~~~~~a~~~----~~~~~-------~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-------~~-   72 (112)
T 2kck_A           12 EGVLQYDAGNYTESIDLFEKAIQL----DPEES-------KYWLMKGKALYNLERYEEAVDCYNYVINVI-------ED-   72 (112)
T ss_dssp             HHHHHHSSCCHHHHHHHHHHHHHH----CCCCH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-------CC-
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHh----CcCCH-------HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-------cc-
Confidence            344555667777777777665543    22222       244678889999999999999999987652       21 


Q ss_pred             CchhhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHH
Q 020453          251 PSQVLDVAVSLAKVADVDRSI-GNEDVAVDGFQEAI  285 (326)
Q Consensus       251 ~~~~~~la~~l~~l~~~~~~~-~~~~~a~~~~~~~~  285 (326)
                          ......+.+++.++..+ |++++|++.+++++
T Consensus        73 ----~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~  104 (112)
T 2kck_A           73 ----EYNKDVWAAKADALRYIEGKEVEAEIAEARAK  104 (112)
T ss_dssp             ----TTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHG
T ss_pred             ----cchHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence                00245677899999999 99999998887664

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=94.43  E-value=0.032  Score=39.54  Aligned_cols=60  Identities=8%  Similarity=-0.060  Sum_probs=46.7

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHhhccchhhhHHHHhHHhcCccccc
Q 020453          258 AVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRS  325 (326)
Q Consensus       258 a~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (326)
                      +..+.++|.++...|++++|++.|++++.+      .|.++.+..++  +..+..++++.+++..|++
T Consensus         4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~l--g~~~~~~g~~~~A~~~~~~   63 (111)
T 2l6j_A            4 FEKQKEQGNSLFKQGLYREAVHCYDQLITA------QPQNPVGYSNK--AMALIKLGEYTQAIQMCQQ   63 (111)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHH------CTTCHHHHHHH--HHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------CCCCHHHHHHH--HHHHHHhcCHHHHHHHHHH
Confidence            456778899999999999999999988765      56666666677  7777777777777766654

>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3

Probab=94.39  E-value=0.013  Score=37.88  Aligned_cols=43  Identities=21%  Similarity=0.600  Sum_probs=32.6

Q ss_pred             CCcccccccccccCCCeecccCC-----cchHHhHhcCC------CCCCCCcccc
Q 020453           22 GPLSCMICQALLFECSKCTPCSH-----VYCKACISRFK------DCPLCGADIE   65 (326)
Q Consensus        22 ~~l~C~iC~~~l~~~p~~l~C~h-----~fC~~Cl~~~~------~CP~Cr~~~~   65 (326)
                      +.-.|.||+.. ..+|..+||..     .|=..||.+|.      .||.|+..+.
T Consensus         5 ~~~~CrIC~~~-~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~   58 (60)
T 1vyx_A            5 DVPVCWICNEE-LGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN   58 (60)
T ss_dssp             SCCEETTTTEE-CSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred             CCCEeEEeecC-CCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence            55689999987 56688899653     44467998884      3999998764

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=94.22  E-value=0.57  Score=36.23  Aligned_cols=97  Identities=13%  Similarity=0.175  Sum_probs=69.2

Q ss_pred             HHHHHHHHHHHHhCCchhHhhHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHH-HHhcCCH--HHHHHHHHHHHHHHHH
Q 020453          166 AVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDL-KYYGGDL--QAARSYYVRSLNVRRD  242 (326)
Q Consensus       166 ~~l~~~C~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~~~~i~~~~~~l~~l-~~~~~~~--~~a~~~~~~sl~~~~~  242 (326)
                      ..+..++.+....++...++..++.+....    +..       ......++.+ ....+++  ++|+..|++++++   
T Consensus        45 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~----p~~-------~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~---  110 (177)
T 2e2e_A           45 EQWALLGEYYLWQNDYSNSLLAYRQALQLR----GEN-------AELYAALATVLYYQASQHMTAQTRAMIDKALAL---  110 (177)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH----CSC-------HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHH---
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC----CCC-------HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHh---
Confidence            344556677777888888888777666543    222       2244567777 6788898  9999999998765   


Q ss_pred             HhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 020453          243 AVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR  287 (326)
Q Consensus       243 ~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~  287 (326)
                          .+.+       ...+..+|.++..+|++++|+..|++++.+
T Consensus       111 ----~p~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~  144 (177)
T 2e2e_A          111 ----DSNE-------ITALMLLASDAFMQANYAQAIELWQKVMDL  144 (177)
T ss_dssp             ----CTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             ----CCCc-------HHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence                2222       345677899999999999999988877653

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=94.10  E-value=0.12  Score=37.16  Aligned_cols=60  Identities=12%  Similarity=0.008  Sum_probs=44.5

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHhhccchhhhHHHHhHHhcCccccc
Q 020453          258 AVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRS  325 (326)
Q Consensus       258 a~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (326)
                      ...+.++|.++...|++++|+..|++++.+      +|.......++  +..+..+|++.++...|++
T Consensus        19 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~l--a~~~~~~g~~~~A~~~~~~   78 (115)
T 2kat_A           19 MLLRFTLGKTYAEHEQFDAALPHLRAALDF------DPTYSVAWKWL--GKTLQGQGDRAGARQAWES   78 (115)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHH--HHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHH------CCCcHHHHHHH--HHHHHHcCCHHHHHHHHHH
Confidence            356778899999999999999999888754      45555556666  6677777777777666654

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=94.07  E-value=0.045  Score=38.73  Aligned_cols=60  Identities=12%  Similarity=0.116  Sum_probs=45.3

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHhhccchhhhHHHHhHHhcCccccc
Q 020453          258 AVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRS  325 (326)
Q Consensus       258 a~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (326)
                      ...+.++|.++..+|++++|+..|++++.+      +|.......++  +.++..+|++.++...|++
T Consensus         7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------~p~~~~a~~~l--g~~~~~~g~~~~A~~~~~~   66 (100)
T 3ma5_A            7 PFTRYALAQEHLKHDNASRALALFEELVET------DPDYVGTYYHL--GKLYERLDRTDDAIDTYAQ   66 (100)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------STTCTHHHHHH--HHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCcHHHHHHH--HHHHHHcCCHHHHHHHHHH
Confidence            345678899999999999999999888754      45665666666  7777777777777766654

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=93.92  E-value=0.05  Score=42.77  Aligned_cols=54  Identities=11%  Similarity=-0.104  Sum_probs=30.9

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 020453          215 KIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQ  282 (326)
Q Consensus       215 ~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~  282 (326)
                      ..+......|++++|+..|++++++.-       .+       ...+..+|.++..+|++++|+..++
T Consensus        11 ~~a~~~~~~g~~~~A~~~~~~al~~~P-------~~-------~~a~~~la~~~~~~g~~~~A~~~~~   64 (176)
T 2r5s_A           11 KQVSELLQQGEHAQALNVIQTLSDELQ-------SR-------GDVKLAKADCLLETKQFELAQELLA   64 (176)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTSCHHHH-------TS-------HHHHHHHHHHHHHTTCHHHHHHHHT
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHCC-------Cc-------HHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            345556667788888887777665321       11       2334455555566666665555443

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=93.66  E-value=0.096  Score=41.06  Aligned_cols=59  Identities=10%  Similarity=0.115  Sum_probs=39.2

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCC--chhHHhhccchhhhHHHHhHHhcCccccc
Q 020453          259 VSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPE--EAGLEQRCWNSSTTNFQKNHLNQLPKFRS  325 (326)
Q Consensus       259 ~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~p~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (326)
                      ..+.++|.++...|++++|+..|++++.      .+|+  +.....++  +.++..+|+...++..|++
T Consensus       109 ~~~~~la~~~~~~g~~~~A~~~~~~~l~------~~p~~~~~~a~~~l--~~~~~~~g~~~~A~~~y~~  169 (176)
T 2r5s_A          109 ELACELAVQYNQVGRDEEALELLWNILK------VNLGAQDGEVKKTF--MDILSALGQGNAIASKYRR  169 (176)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHT------TCTTTTTTHHHHHH--HHHHHHHCSSCHHHHHHHH
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHH------hCcccChHHHHHHH--HHHHHHhCCCCcHHHHHHH
Confidence            4556788999999999999988886643      3443  23355556  6666666666555555543

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=93.17  E-value=0.094  Score=35.49  Aligned_cols=61  Identities=15%  Similarity=0.147  Sum_probs=44.4

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHhhccchhhhHHHHhHHhcCccccc
Q 020453          257 VAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRS  325 (326)
Q Consensus       257 la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (326)
                      .+..+..+|.++...|++++|+..|++++.+      .|.+.....++  +..+...+++.+++..|++
T Consensus         8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~------~~~~~~~~~~l--~~~~~~~~~~~~A~~~~~~   68 (91)
T 1na3_A            8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALEL------DPNNAEAWYNL--GNAYYKQGDYDEAIEYYQK   68 (91)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHH--HHHHHHTTCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHccCHHHHHHHHHHHHhc------CCCCHHHHHHH--HHHHHHHhhHHHHHHHHHH
Confidence            3556778899999999999999999988764      45555555556  6666666677766666554

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=93.06  E-value=0.77  Score=35.74  Aligned_cols=78  Identities=15%  Similarity=0.206  Sum_probs=39.9

Q ss_pred             HHHHHHHHHHhcCCH---HHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcC-----------CHHHH
Q 020453          212 SLNKIGDLKYYGGDL---QAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIG-----------NEDVA  277 (326)
Q Consensus       212 ~~~~l~~l~~~~~~~---~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~-----------~~~~a  277 (326)
                      ...++|.+...++++   ..++..+++++...++..+-++...       ..+.++|.+|..+|           ++++|
T Consensus        38 a~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~-------~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA  110 (158)
T 1zu2_A           38 NLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKD-------EAVWCIGNAYTSFAFLTPDETEAKHNFDLA  110 (158)
T ss_dssp             HHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCH-------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcH-------HHHHHHHHHHHHhcccCcchhhhhccHHHH
Confidence            334555555444433   2333444444444444455566543       44556666666554           56666


Q ss_pred             HHHHHHHHHHHHHhhcCCCchhHHh
Q 020453          278 VDGFQEAIKRLESLTLKPEEAGLEQ  302 (326)
Q Consensus       278 ~~~~~~~~~~~~~l~~~p~~~~~~~  302 (326)
                      +++|++++++      +|++....+
T Consensus       111 ~~~~~kAl~l------~P~~~~y~~  129 (158)
T 1zu2_A          111 TQFFQQAVDE------QPDNTHYLK  129 (158)
T ss_dssp             HHHHHHHHHH------CTTCHHHHH
T ss_pred             HHHHHHHHHh------CCCCHHHHH
Confidence            6666665544      565544433

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=92.97  E-value=0.47  Score=38.66  Aligned_cols=64  Identities=11%  Similarity=-0.037  Sum_probs=47.1

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 020453          213 LNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR  287 (326)
Q Consensus       213 ~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~  287 (326)
                      .-.++......|++++|+..|++.++.       .+...    .....+-++|.++..+|++++|++.|++++..
T Consensus         7 ~~~~a~~~~~~g~~~~A~~~~~~~~~~-------~p~~~----~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~   70 (225)
T 2yhc_A            7 IYATAQQKLQDGNWRQAITQLEALDNR-------YPFGP----YSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL   70 (225)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHH-------CTTST----THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCCCh----HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence            345666777889999999999998764       22211    12346778899999999999999888877653

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=92.39  E-value=0.33  Score=41.73  Aligned_cols=94  Identities=11%  Similarity=-0.045  Sum_probs=61.2

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 020453          212 SLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL  291 (326)
Q Consensus       212 ~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l  291 (326)
                      ....++.+...+|++++|+..|+++++..       +...  ...++..+   ..+....|++++|+..|+++++     
T Consensus       132 ~~~~l~~~~~~~g~~~~A~~~l~~~~~~~-------p~~~--~~~l~~a~---~~l~~~~~~~~eA~~~~~~~l~-----  194 (291)
T 3mkr_A          132 CMAMTVQILLKLDRLDLARKELKKMQDQD-------EDAT--LTQLATAW---VSLAAGGEKLQDAYYIFQEMAD-----  194 (291)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCH--HHHHHHHH---HHHHHCTTHHHHHHHHHHHHHH-----
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhhC-------cCcH--HHHHHHHH---HHHHhCchHHHHHHHHHHHHHH-----
Confidence            44567778888999999999999987651       2211  11111111   1223344777788777776654     


Q ss_pred             hcCCCchhHHhhccchhhhHHHHhHHhcCccccc
Q 020453          292 TLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRS  325 (326)
Q Consensus       292 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (326)
                       ..|+++.+..++  +..+..+|++.++...|++
T Consensus       195 -~~p~~~~~~~~l--a~~~~~~g~~~eA~~~l~~  225 (291)
T 3mkr_A          195 -KCSPTLLLLNGQ--AACHMAQGRWEAAEGVLQE  225 (291)
T ss_dssp             -HSCCCHHHHHHH--HHHHHHTTCHHHHHHHHHH
T ss_pred             -hCCCcHHHHHHH--HHHHHHcCCHHHHHHHHHH
Confidence             367777777777  7777778888877777664

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=92.37  E-value=0.14  Score=41.64  Aligned_cols=56  Identities=18%  Similarity=0.091  Sum_probs=34.5

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcC----CHHHHHHHHHHH
Q 020453          212 SLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIG----NEDVAVDGFQEA  284 (326)
Q Consensus       212 ~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~----~~~~a~~~~~~~  284 (326)
                      +...++.+....+++++|+.+|+++.+.                .....+.+||.++.. +    ++++|+.+|+++
T Consensus        20 a~~~lg~~~~~~~~~~~A~~~~~~a~~~----------------g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A   79 (212)
T 3rjv_A           20 AQYYLADTWVSSGDYQKAEYWAQKAAAQ----------------GDGDALALLAQLKIR-NPQQADYPQARQLAEKA   79 (212)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHT----------------TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHc----------------CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHH
Confidence            4456777777778888888888887541                012344555555555 4    566666666655

>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A

Probab=92.31  E-value=0.083  Score=52.67  Aligned_cols=62  Identities=10%  Similarity=0.089  Sum_probs=54.1

Q ss_pred             CCcccccccccccCCCeecccC-CcchHHhHhcCCC----CCCCCcccc--cccccHHHHHHHHHHHhcc
Q 020453           22 GPLSCMICQALLFECSKCTPCS-HVYCKACISRFKD----CPLCGADIE--KIEADTTLQDVVDRFIEGH   84 (326)
Q Consensus        22 ~~l~C~iC~~~l~~~p~~l~C~-h~fC~~Cl~~~~~----CP~Cr~~~~--~~~~n~~l~~~~~~~~~~~   84 (326)
                      ++|.|||-.++ ..+||++|-| ++|=+..|.+|..    ||.-|.++.  .+.+|..+++.++.+....
T Consensus       890 ~~F~cPIs~~l-M~DPVilpsG~~TydR~~I~~wl~~~~tdP~Tr~~L~~~~liPN~~Lk~~I~~w~~~~  958 (968)
T 3m62_A          890 DEFLDPLMYTI-MKDPVILPASKMNIDRSTIKAHLLSDSTDPFNRMPLKLEDVTPNEELRQKILCFKKQK  958 (968)
T ss_dssp             GGGBCTTTCSB-CSSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGGCEECHHHHHHHHHHHHHH
T ss_pred             HHhCCcchhhH-HhCCeEcCCCCEEECHHHHHHHHhcCCCCCCCCCCCCcccccccHHHHHHHHHHHHHH
Confidence            68999999999 4779999998 6999999999964    998888887  4889999999999987754

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=91.74  E-value=0.1  Score=37.38  Aligned_cols=62  Identities=10%  Similarity=-0.016  Sum_probs=45.4

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhh-cCCCchhHHhhccchhhhHHHHhHHhcCccccc
Q 020453          262 AKVADVDRSIGNEDVAVDGFQEAIKRLESLT-LKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRS  325 (326)
Q Consensus       262 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (326)
                      -.||..+...|++..|+.+|++|+.....-. ..+..+.+...+  +..+.-+|++..++..+++
T Consensus         9 ~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L--~~~~~~~g~~~~A~~~~~~   71 (104)
T 2v5f_A            9 FELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYL--SYAVYQQGDLDKALLLTKK   71 (104)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHH--HHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHH--HHHHHHccCHHHHHHHHHH
Confidence            3578999999999999999999998875421 123345567777  7777777777777666654

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=91.02  E-value=2.1  Score=34.66  Aligned_cols=62  Identities=10%  Similarity=-0.055  Sum_probs=45.5

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 020453          211 VSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQE  283 (326)
Q Consensus       211 ~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~  283 (326)
                      ...-.++.+....+++++|+..|++.++..       +.+.    .....+..++.++..+|++++|++.++.
T Consensus       148 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-------p~~~----~~~~a~~~l~~~~~~~g~~~~A~~~~~~  209 (225)
T 2yhc_A          148 KYEYSVAEYYTERGAWVAVVNRVEGMLRDY-------PDTQ----ATRDALPLMENAYRQMQMNAQAEKVAKI  209 (225)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-------TTSH----HHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCcHHHHHHHHHHHHHHC-------cCCC----ccHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence            333467778888899999999998886652       2211    2335678899999999999999877653

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=90.26  E-value=0.54  Score=38.06  Aligned_cols=90  Identities=19%  Similarity=0.146  Sum_probs=58.4

Q ss_pred             HHHHHHHHHHHhCCchhHhhHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHhcC----CHHHHHHHHHHHHHHHHH
Q 020453          167 VLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGG----DLQAARSYYVRSLNVRRD  242 (326)
Q Consensus       167 ~l~~~C~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~~~~i~~~~~~l~~l~~~~~----~~~~a~~~~~~sl~~~~~  242 (326)
                      .+..++.+....++...++..++.+.+.    +  .       ..+..+|+.+... +    ++++|+.+|+++.+.   
T Consensus        20 a~~~lg~~~~~~~~~~~A~~~~~~a~~~----g--~-------~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~---   82 (212)
T 3rjv_A           20 AQYYLADTWVSSGDYQKAEYWAQKAAAQ----G--D-------GDALALLAQLKIR-NPQQADYPQARQLAEKAVEA---   82 (212)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHT----T--C-------HHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT---
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHc----C--C-------HHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC---
Confidence            3445555655667777777776655431    1  1       2345677777766 5    899999999988431   


Q ss_pred             HhhcCCCCCchhhhHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHH
Q 020453          243 AVKRHSNVPSQVLDVAVSLAKVADVDRS----IGNEDVAVDGFQEAIK  286 (326)
Q Consensus       243 ~~~~~~~~~~~~~~la~~l~~l~~~~~~----~~~~~~a~~~~~~~~~  286 (326)
                                   .......+||.++..    .+++++|+.+|+++.+
T Consensus        83 -------------g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~  117 (212)
T 3rjv_A           83 -------------GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAAR  117 (212)
T ss_dssp             -------------TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTS
T ss_pred             -------------CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHH
Confidence                         124456677777776    7788888888776653

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=89.96  E-value=0.21  Score=34.54  Aligned_cols=54  Identities=11%  Similarity=0.102  Sum_probs=34.8

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchh-HHhhccchhhhHHHHhHHhcCccccc
Q 020453          264 VADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAG-LEQRCWNSSTTNFQKNHLNQLPKFRS  325 (326)
Q Consensus       264 l~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~p~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (326)
                      .|..+...|++++|+..|++++++      +|.+.. +..++  +..+..++++.+++..|++
T Consensus         6 ~a~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~~l--g~~~~~~~~~~~A~~~~~~   60 (99)
T 2kc7_A            6 TIKELINQGDIENALQALEEFLQT------EPVGKDEAYYLM--GNAYRKLGDWQKALNNYQS   60 (99)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHH------CSSTHHHHHHHH--HHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHH------CCCcHHHHHHHH--HHHHHHcCCHHHHHHHHHH
Confidence            466667778887777777766543      455555 55555  6666666676666666554

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=89.47  E-value=1.1  Score=47.13  Aligned_cols=58  Identities=19%  Similarity=0.236  Sum_probs=42.0

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 020453          212 SLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRL  288 (326)
Q Consensus       212 ~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~  288 (326)
                      ...+++..+...|++++|+..|.++            .       -...+.+++..+..+|++++|+++|+.+.+..
T Consensus      1107 vWsqLAKAql~~G~~kEAIdsYiKA------------d-------D~say~eVa~~~~~lGkyEEAIeyL~mArk~~ 1164 (1630)
T 1xi4_A         1107 VWSQLAKAQLQKGMVKEAIDSYIKA------------D-------DPSSYMEVVQAANTSGNWEELVKYLQMARKKA 1164 (1630)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHhc------------C-------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Confidence            3445666777778888888888664            1       13455668888999999999999998876543

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=88.33  E-value=2.5  Score=31.47  Aligned_cols=61  Identities=21%  Similarity=0.261  Sum_probs=48.9

Q ss_pred             HHHHHHHHHHHh----cCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHh----cCCHHHHHHHHH
Q 020453          211 VSLNKIGDLKYY----GGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRS----IGNEDVAVDGFQ  282 (326)
Q Consensus       211 ~~~~~l~~l~~~----~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~----~~~~~~a~~~~~  282 (326)
                      ....+++.+...    .+++++|+.+|+++.+.                .......+|+.++..    .+++++|+.+|+
T Consensus        58 ~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~----------------g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~  121 (138)
T 1klx_A           58 NGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL----------------NDQDGCLILGYKQYAGKGVVKNEKQAVKTFE  121 (138)
T ss_dssp             HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT----------------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC----------------CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHH
Confidence            455788888877    78999999999998542                124567889999988    899999999999


Q ss_pred             HHHHH
Q 020453          283 EAIKR  287 (326)
Q Consensus       283 ~~~~~  287 (326)
                      ++.+.
T Consensus       122 ~Aa~~  126 (138)
T 1klx_A          122 KACRL  126 (138)
T ss_dssp             HHHHT
T ss_pred             HHHHC
Confidence            88653

>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1

Probab=88.21  E-value=0.058  Score=37.65  Aligned_cols=48  Identities=25%  Similarity=0.608  Sum_probs=28.2

Q ss_pred             CCCCCCcccCCcccccccccccCCCeecccCCcchHHhHhcCCC---CCCCCccccc
Q 020453           13 GYDAQSFKIGPLSCMICQALLFECSKCTPCSHVYCKACISRFKD---CPLCGADIEK   66 (326)
Q Consensus        13 ~~~~~~~~~~~l~C~iC~~~l~~~p~~l~C~h~fC~~Cl~~~~~---CP~Cr~~~~~   66 (326)
                      |...+...++ ..||.|...| + +.   =++.+|..|-..+..   ||.|.+++..
T Consensus        23 ~~~~~~~~M~-~~CP~Cq~eL-~-~~---g~~~hC~~C~~~f~~~a~CPdC~q~Lev   73 (101)
T 2jne_A           23 GLVPRGSHME-LHCPQCQHVL-D-QD---NGHARCRSCGEFIEMKALCPDCHQPLQV   73 (101)
T ss_dssp             --------CC-CBCSSSCSBE-E-EE---TTEEEETTTCCEEEEEEECTTTCSBCEE
T ss_pred             ccccCccccc-ccCccCCCcc-e-ec---CCEEECccccchhhccccCcchhhHHHH
Confidence            3333333334 8999999875 3 22   134458888877643   9999988663

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=88.12  E-value=5.3  Score=31.14  Aligned_cols=65  Identities=15%  Similarity=-0.019  Sum_probs=47.2

Q ss_pred             hcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 020453          222 YGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL  291 (326)
Q Consensus       222 ~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l  291 (326)
                      ..+.|+.|+....-.+.+.+.     ..+.......+..+..+|+++...|+|.+|..+|++++...+.+
T Consensus        32 d~~LY~sA~~La~lLlSl~~~-----~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l   96 (167)
T 3ffl_A           32 AAGLHSNVRLLSSLLLTLSNN-----NPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKAL   96 (167)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHH-----STTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC
T ss_pred             HhhhHHHHHHHHHHHHHhhcC-----CcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHH
Confidence            456777777666665555322     12222233467788999999999999999999999999999866

>2ffw_A Midline-1; B-BOX, ring finger, zinc-finger, ligase; NMR {Homo sapiens}

Probab=87.89  E-value=0.0032  Score=43.14  Aligned_cols=31  Identities=10%  Similarity=0.174  Sum_probs=23.6

Q ss_pred             CCceeccCCcccc------hhhHHHHHHHhhhcCHHHHHHHHHHHHHHHHH-HH
Q 020453          105 KKVIYEDVSMERG------AFLVQQAMRAFRAQNVESAKSRLSLCTEDIRD-QI  151 (326)
Q Consensus       105 ~~~~~C~~C~~~~------~C~~c~~~~~~~~~~~~~a~~~~~~c~~~l~~-~l  151 (326)
                      +..+.|+.|.+.+      .|+.|.+                ++|+.|+.. |.
T Consensus        28 ~~~v~C~~C~~~~~~~A~ksCl~C~~----------------s~C~~hl~~~H~   65 (78)
T 2ffw_A           28 AEKVLCQFCDQDPAQDAVKTCVTCEV----------------SYCDECLKATHP   65 (78)
T ss_dssp             SCCCBCSSCCSSSCCBCCEEETTTTE----------------EECHHHHHHHSC
T ss_pred             CCCccCCcCCCCCCCCCeeEccCccc----------------hhhhhhhHhhcC
Confidence            3568899997633      2999999                889888875 54

>2d8u_A Ubiquitin ligase TRIM63; tripartite motif-containing 63, muscle-specific ring finger protein 1, MURF1, ring finger protein 28; NMR {Homo sapiens} SCOP: g.43.1.1

Probab=87.41  E-value=0.0018  Score=42.55  Aligned_cols=42  Identities=7%  Similarity=0.015  Sum_probs=32.1

Q ss_pred             HHHHHH-HHHHHHHH---------HHHH-HhCCchhHhhHHHHHHHHHHhCCC
Q 020453          159 ELCSQL-GAVLGMLG---------DCCR-AMGDADAAVAYFADSVEFLMKLPM  200 (326)
Q Consensus       159 ~~C~~H-~~~l~~~C---------~~~~-~~h~~H~~~~~~e~~~~~~~~L~~  200 (326)
                      ..|+.| ++.+++||         .|.. ..|++|.++++.+++...+.+|..
T Consensus         9 ~~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H~~H~~~~l~~a~~~~k~~L~~   61 (64)
T 2d8u_A            9 PMCKEHEDEKINIYCLTCEVPTCSMCKVFGIHKACEVAPLQSVFQGQKTESGP   61 (64)
T ss_dssp             CCCSSCTTCCCCSEESSSCCCCCSHHHHSSSTTSSCEECTTTCCSSCCCCSSC
T ss_pred             CcCcCcCCCccceEcCcCCceeCccccCCCcCCCCCeeCHHHHHHHHHHHHHH
Confidence            479999 89999999         4433 368889999998887766665543

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=86.89  E-value=10  Score=32.15  Aligned_cols=27  Identities=11%  Similarity=0.004  Sum_probs=16.9

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 020453          260 SLAKVADVDRSIGNEDVAVDGFQEAIK  286 (326)
Q Consensus       260 ~l~~l~~~~~~~~~~~~a~~~~~~~~~  286 (326)
                      ....++.++..+|++++|.+.|++++.
T Consensus       101 ~~~~~~~~~~~~~~~~~A~~~~~~al~  127 (308)
T 2ond_A          101 LYFAYADYEESRMKYEKVHSIYNRLLA  127 (308)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence            344556666667777777666666554

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=86.57  E-value=3.3  Score=32.34  Aligned_cols=102  Identities=12%  Similarity=-0.018  Sum_probs=59.8

Q ss_pred             HhCCchhHhhHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCC--------
Q 020453          177 AMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHS--------  248 (326)
Q Consensus       177 ~~h~~H~~~~~~e~~~~~~~~L~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~--------  248 (326)
                      ..+.+..++.+..-....-.. .+... --....+..-.+++.....++|..|...|+++|+.++.+.....        
T Consensus        32 d~~LY~sA~~La~lLlSl~~~-~~~~~-sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~  109 (167)
T 3ffl_A           32 AAGLHSNVRLLSSLLLTLSNN-NPELF-SPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNS  109 (167)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHH-STTSS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-------------
T ss_pred             HhhhHHHHHHHHHHHHHhhcC-Ccccc-cHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCcccccccc
Confidence            345556666666554433321 11100 01223445667899999999999999999999998874321110        


Q ss_pred             ---CCCchhhhHHHHHHHHHHHHHhcCCHHHHHHH
Q 020453          249 ---NVPSQVLDVAVSLAKVADVDRSIGNEDVAVDG  280 (326)
Q Consensus       249 ---~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~  280 (326)
                         .....++..+...-+++..+..+++.++|+..
T Consensus       110 ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~  144 (167)
T 3ffl_A          110 ASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAI  144 (167)
T ss_dssp             -------CCCCHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             CCCcccccccchHHHHHHHHHHHHHHCCHHHHHHH
Confidence               00011233344455689999999997766654

>2yvr_A Transcription intermediary factor 1-beta; ZF-B_BOX domain, structural genomics, NPPSFA; 1.80A {Homo sapiens}

Probab=86.45  E-value=0.0083  Score=37.08  Aligned_cols=33  Identities=12%  Similarity=0.058  Sum_probs=24.3

Q ss_pred             HHHHHH-HHHHHHHH---------HHHHHhCCchhHhhHHHHH
Q 020453          159 ELCSQL-GAVLGMLG---------DCCRAMGDADAAVAYFADS  191 (326)
Q Consensus       159 ~~C~~H-~~~l~~~C---------~~~~~~h~~H~~~~~~e~~  191 (326)
                      ..|+.| ++.|++||         .|....|++|.++++.+++
T Consensus         7 ~~C~~H~~e~l~lfC~~~~~~iC~~C~~~~H~~H~~~~l~ea~   49 (50)
T 2yvr_A            7 VYCNVHKHEPLVLFCESCDTLTCRDCQLNAHKDHQYQFLEDAV   49 (50)
T ss_dssp             CBCSSSTTCBCCEEETTTTEEECHHHHHTTTTTCCEEETTC--
T ss_pred             CcCcCCCCCCEEEEeCCCCEEEecccCCCcCCCCceecHHHHh
Confidence            469999 89999999         4444568889988876654

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=85.08  E-value=0.83  Score=34.21  Aligned_cols=55  Identities=9%  Similarity=0.019  Sum_probs=43.2

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHH
Q 020453          216 IGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRS----IGNEDVAVDGFQEAIK  286 (326)
Q Consensus       216 l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~----~~~~~~a~~~~~~~~~  286 (326)
                      ++.+......+++|+.+|+++.+.                .......+|+.++..    .+++++|+.+|+++.+
T Consensus        31 lg~~y~~g~~~~~A~~~~~~Aa~~----------------g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~   89 (138)
T 1klx_A           31 LSLVSNSQINKQKLFQYLSKACEL----------------NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACG   89 (138)
T ss_dssp             HHHHTCTTSCHHHHHHHHHHHHHT----------------TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHcC----------------CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHc
Confidence            777776667788888888888543                124677889999888    8999999999998865

>2did_A Tripartite motif protein 39; ZF-B-box domian, Zn binding, one sequence two fold, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dif_A

Probab=83.30  E-value=0.0063  Score=38.17  Aligned_cols=32  Identities=22%  Similarity=0.311  Sum_probs=24.2

Q ss_pred             HHHHHHHHHHHHHH---------HHHH-HhCCchhHhhHHHH
Q 020453          159 ELCSQLGAVLGMLG---------DCCR-AMGDADAAVAYFAD  190 (326)
Q Consensus       159 ~~C~~H~~~l~~~C---------~~~~-~~h~~H~~~~~~e~  190 (326)
                      ..|+.|++.|++||         .|.. ..|++|.++++.++
T Consensus         9 ~~C~~H~e~l~lfC~~d~~~iC~~C~~~~~H~~H~~~~l~ea   50 (53)
T 2did_A            9 SLCPQHHEALSLFCYEDQEAVCLICAISHTHRAHTVVPLSGP   50 (53)
T ss_dssp             CBCTTTCCBCCEEESSSCSEECHHHHTSSTTTTSCEEECCCT
T ss_pred             CcChhhCCeeeEEeCCCCeEEeccccCCCCCCCCcEeeHHHH
Confidence            47999999999999         3333 45888988877654

>2dja_A Midline-2; tripartite motif protein 1, ZF-B_BOX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dq5_A

Probab=83.09  E-value=0.0021  Score=44.81  Aligned_cols=46  Identities=11%  Similarity=0.044  Sum_probs=34.9

Q ss_pred             HHHHHH-HHHHHHHH---------HHHH-HhCCchhHhhHHHHHHHHHHhCCCChhH
Q 020453          159 ELCSQL-GAVLGMLG---------DCCR-AMGDADAAVAYFADSVEFLMKLPMDDLE  204 (326)
Q Consensus       159 ~~C~~H-~~~l~~~C---------~~~~-~~h~~H~~~~~~e~~~~~~~~L~~~~~~  204 (326)
                      ..|+.| ++.+++||         .|.. ..|++|.+.++.+++...+.+|......
T Consensus        19 ~~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H~~H~~~~l~ea~~~~k~~L~~~l~~   75 (84)
T 2dja_A           19 ITCLDHENEKVNMYCVSDDQLICALCKLVGRHRDHQVASLNDRFEKLKQTLEMNLTN   75 (84)
T ss_dssp             CCCSSCSSSCCCEEETTTTEEECHHHHHTSTTTTCCBCCCCSSCCCCCCCCCCCCCC
T ss_pred             CcCcCcCCccccEEcCCCCceEcccCcCCCCCCCCCccCHHHHHHHHHHHHHHHHHH
Confidence            479999 68999999         4443 4688899999998888777766654443

>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}

Probab=83.03  E-value=6.3  Score=26.82  Aligned_cols=36  Identities=28%  Similarity=0.337  Sum_probs=29.6

Q ss_pred             hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 020453          256 DVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL  291 (326)
Q Consensus       256 ~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l  291 (326)
                      +.|..+-..|......|++++|+.+|.++++.+...
T Consensus        17 ~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l~~a   52 (83)
T 2w2u_A           17 EMARKYAINAVKADKEGNAEEAITNYKKAIEVLAQL   52 (83)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence            445556666777788899999999999999999886

>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=82.72  E-value=0.73  Score=40.89  Aligned_cols=58  Identities=24%  Similarity=0.472  Sum_probs=42.8

Q ss_pred             CcccccccccccCCCeecccCCcchHHh--------HhcCCCCCCCCcccc--cccccHHHHHHHHHH
Q 020453           23 PLSCMICQALLFECSKCTPCSHVYCKAC--------ISRFKDCPLCGADIE--KIEADTTLQDVVDRF   80 (326)
Q Consensus        23 ~l~C~iC~~~l~~~p~~l~C~h~fC~~C--------l~~~~~CP~Cr~~~~--~~~~n~~l~~~~~~~   80 (326)
                      .|.||+=...+..+-+...|.|.-|.+-        -.+.|.||.|.+.+.  ++..+..+..++...
T Consensus       249 SL~CPlS~~ri~~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~~dL~ID~~~~~IL~~~  316 (371)
T 3i2d_A          249 SLQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIALENLAISEFVDDILQNC  316 (371)
T ss_dssp             ESBCTTTSSBCSSEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCGGGEEEBHHHHHHHTTS
T ss_pred             eecCCCccccccccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccCHHHeeEcHHHHHHHHhc
Confidence            5889998888655455578999855432        234588999999886  688888888877643

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=82.43  E-value=1.6  Score=39.37  Aligned_cols=72  Identities=8%  Similarity=-0.041  Sum_probs=53.9

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 020453          212 SLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL  291 (326)
Q Consensus       212 ~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l  291 (326)
                      .+.+++.++...|+|.+|...+.+.++..+..     .+..   .+....-....++..++++.++...|.++..+...+
T Consensus       101 l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~-----dd~~---~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai  172 (394)
T 3txn_A          101 LEARLIALYFDTALYTEALALGAQLLRELKKL-----DDKN---LLVEVQLLESKTYHALSNLPKARAALTSARTTANAI  172 (394)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTS-----SCTH---HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcc-----ccch---hHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccC
Confidence            45689999999999999999998887765431     1221   233334445688899999999999999998887654

>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}

Probab=81.65  E-value=3.9  Score=27.51  Aligned_cols=50  Identities=18%  Similarity=0.190  Sum_probs=36.2

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHhhccchhhhHHHH
Q 020453          263 KVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQK  314 (326)
Q Consensus       263 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~  314 (326)
                      ++|.-+-..|+|+.|+.+|+.++..+.+.-..-+++.....|  ..++.-+.
T Consensus        17 k~ARe~Al~GnYdta~~yY~g~~~qI~k~l~~~~d~~~r~kW--~~~~~ei~   66 (78)
T 2rpa_A           17 KLAREYALLGNYDSAMVYYQGVLDQMNKYLYSVKDTHLRQKW--QQVWQEIN   66 (78)
T ss_dssp             HHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHH--HHHHHHHH
T ss_pred             HHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhcCCHHHHHhH--HHHHHHHH
Confidence            457788888999999999999999998872222355566666  55555544

>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}

Probab=81.58  E-value=0.69  Score=38.67  Aligned_cols=44  Identities=25%  Similarity=0.685  Sum_probs=34.2

Q ss_pred             CCcccccccccccCCCeecccCCcchHHhHhcCC------CCCCCCcccc
Q 020453           22 GPLSCMICQALLFECSKCTPCSHVYCKACISRFK------DCPLCGADIE   65 (326)
Q Consensus        22 ~~l~C~iC~~~l~~~p~~l~C~h~fC~~Cl~~~~------~CP~Cr~~~~   65 (326)
                      ....|.+|..+....-++-.|+|.|=..|+..|+      .||.|+...+
T Consensus       179 ~i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~  228 (238)
T 3nw0_A          179 AVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP  228 (238)
T ss_dssp             TCCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCC
T ss_pred             CCCcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCC
Confidence            3668999999855444455589999899998886      3999998765

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=81.14  E-value=2.8  Score=38.42  Aligned_cols=27  Identities=15%  Similarity=0.062  Sum_probs=19.4

Q ss_pred             HHHHHHHHHHh----cCCHHHHHHHHHHHHH
Q 020453          212 SLNKIGDLKYY----GGDLQAARSYYVRSLN  238 (326)
Q Consensus       212 ~~~~l~~l~~~----~~~~~~a~~~~~~sl~  238 (326)
                      +...++.+...    .+++++|+..|+++.+
T Consensus        77 a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~  107 (490)
T 2xm6_A           77 AEYVLGLRYMNGEGVPQDYAQAVIWYKKAAL  107 (490)
T ss_dssp             HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence            44567777766    7788888888887754

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=80.92  E-value=11  Score=25.84  Aligned_cols=47  Identities=11%  Similarity=0.039  Sum_probs=35.0

Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 020453          226 LQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIK  286 (326)
Q Consensus       226 ~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~  286 (326)
                      .++|...|++++++       ++.+       ...+..+|..+...|+|++|+.+++++++
T Consensus        25 ~~~A~~~l~~AL~~-------dp~~-------~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~   71 (93)
T 3bee_A           25 TDEVSLLLEQALQL-------EPYN-------EAALSLIANDHFISFRFQEAIDTWVLLLD   71 (93)
T ss_dssp             CHHHHHHHHHHHHH-------CTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHH-------CcCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            67888888777664       4443       45666789999999999999988886543

>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B

Probab=80.16  E-value=1  Score=39.84  Aligned_cols=57  Identities=18%  Similarity=0.416  Sum_probs=42.5

Q ss_pred             CcccccccccccCCCeecccCCcchHHhH--------hcCCCCCCCCcccc--cccccHHHHHHHHH
Q 020453           23 PLSCMICQALLFECSKCTPCSHVYCKACI--------SRFKDCPLCGADIE--KIEADTTLQDVVDR   79 (326)
Q Consensus        23 ~l~C~iC~~~l~~~p~~l~C~h~fC~~Cl--------~~~~~CP~Cr~~~~--~~~~n~~l~~~~~~   79 (326)
                      .|.||+=...+..+-+...|.|.-|-+-.        .+.|.||.|.+.+.  ++..+..+.+++..
T Consensus       215 SL~CPlS~~ri~~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~~dL~ID~~~~~IL~~  281 (360)
T 4fo9_A          215 SLMCPLGKMRLTIPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYESLILDGLFMEILND  281 (360)
T ss_dssp             ESBCTTTCSBCSSEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCGGGEEEBHHHHHHHTT
T ss_pred             eeeCCCccceeccCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccCHHHeEEcHHHHHHHHh
Confidence            57899988876554555789998543322        34588999999887  68888888888764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	326
d1chca_	68	g.44.1.1 (A:) Immediate early protein, IEEHV {Equi	2e-07
d1jm7b_	97	g.44.1.1 (B:) bard1 RING domain {Human (Homo sapie	2e-06
d1bora_	56	g.44.1.1 (A:) Acute promyelocytic leukaemia proto-	3e-06
d1jm7a_	103	g.44.1.1 (A:) brca1 RING domain {Human (Homo sapie	3e-06
d1fbva4	79	g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [Ta	5e-06
d1rmda2	86	g.44.1.1 (A:1-86) V(D)J recombination activating p	7e-05
d1iyma_	55	g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sati	2e-04
d2baya1	56	g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {	0.002

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]} Length = 68

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

 Score = 45.7 bits (108), Expect = 2e-07
 Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 8/58 (13%)

Query: 26 CMICQALLFECSKCTPCSHVYCKACISRF----KDCPLCGADIEKI----EADTTLQD 75
          C IC       S   PC H +C  CI+R+      CPLC   +E +    E+D+   D
Sbjct: 8  CPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVESVVHTIESDSEFGD 65

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 97

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: bard1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.6 bits (102), Expect = 2e-06
 Identities = 16/80 (20%), Positives = 31/80 (38%), Gaps = 9/80 (11%)

Query: 24 LSCMICQALLFECSKCTPCSHVYCKACISRF--KDCPLCGADI--EKIEADTTLQDVVDR 79
          L C  C  +L E      C H++C  C+S      CP+C      + ++ +  L  ++  
Sbjct: 23 LRCSRCTNILREPVCLGGCEHIFCSNCVSDCIGTGCPVCYTPAWIQDLKINRQLDSMIQL 82

Query: 80 FIEGHARIKRSHTNSDKEED 99
                   R+  + ++  D
Sbjct: 83 C-----SKLRNLLHDNELSD 97

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]} Length = 56

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.8 bits (98), Expect = 3e-06
 Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 2/42 (4%)

Query: 24 LSCMICQALLFECSKCTPCSHVYCKACISRFK-DCPLCGADI 64
          L C  CQA   +C K  PC H  C  C+      CP+C A  
Sbjct: 7  LRCQQCQAE-AKCPKLLPCLHTLCSGCLEASGMQCPICQAPW 47

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.1 bits (101), Expect = 3e-06
 Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 10/68 (14%)

Query: 24 LSCMICQALLFECSKCTPCSHVYCKACISRF-------KDCPLCGADI--EKIEADTTLQ 74
          L C IC  L  +    T C H++CK C+ +          CPLC  DI    ++  T   
Sbjct: 22 LECPICLEL-IKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQESTRFS 80

Query: 75 DVVDRFIE 82
           +V+  ++
Sbjct: 81 QLVEELLK 88

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.9 bits (98), Expect = 5e-06
 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 6/48 (12%)

Query: 26 CMICQALLFECSKCTPCSHVYCKACI-----SRFKDCPLCGADIEKIE 68
          C IC     +  K  PC H+ C +C+     S  + CP C  +I+  E
Sbjct: 26 CKICAEN-DKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTE 72

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 86

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.7 bits (90), Expect = 7e-05
 Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 6/50 (12%)

Query: 24 LSCMICQALLFECSKCTPCSHVYCKACISRF-----KDCPLCGADIEKIE 68
          +SC IC+ +       T C H++C+ CI R        CP C       +
Sbjct: 24 ISCQICEHI-LADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTD 72

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]} Length = 55

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

 Score = 36.4 bits (84), Expect = 2e-04
 Identities = 11/48 (22%), Positives = 18/48 (37%), Gaps = 7/48 (14%)

Query: 24 LSCMICQALLFE---CSKCTPCSHVYCKACISRF----KDCPLCGADI 64
          + C +C A L +         C H +   C+  +      CPLC   +
Sbjct: 6  VECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTV 53

>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 56

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Pre-mRNA splicing factor Prp19
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 34.0 bits (77), Expect = 0.002
 Identities = 4/47 (8%), Positives = 13/47 (27%), Gaps = 4/47 (8%)

Query: 24 LSCMICQALLFECSKCTPCSHVYCKACIS----RFKDCPLCGADIEK 66
          + C I   +            ++ K+ +        + P+    +  
Sbjct: 1  MLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSI 47

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	326
d2c2la2	80	STIP1 homology and U box-containing protein 1, STU	99.45
d1t1ha_	78	E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi	99.42
d1jm7b_	97	bard1 RING domain {Human (Homo sapiens) [TaxId: 96	99.39
d1jm7a_	103	brca1 RING domain {Human (Homo sapiens) [TaxId: 96	99.38
d1bora_	56	Acute promyelocytic leukaemia proto-oncoprotein PM	99.3
d1rmda2	86	V(D)J recombination activating protein 1 (RAG1), d	99.29
d1wgma_	98	Ubiquitin conjugation factor E4A {Human (Homo sapi	99.23
d1fbva4	79	CBL {Human (Homo sapiens) [TaxId: 9606]}	99.03
d2baya1	56	Pre-mRNA splicing factor Prp19 {Baker's yeast (Sac	99.01
d1g25a_	65	TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9	99.0
d1chca_	68	Immediate early protein, IEEHV {Equine herpesvirus	98.99
d1ur6b_	52	Not-4 N-terminal RING finger domain {Human (Homo s	98.88
d1iyma_	55	EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45	98.77
d1v87a_	114	Deltex protein 2 RING-H2 domain {Mouse (Mus muscul	98.32
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	98.32
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	98.31
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	98.27
d3dplr1	88	RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase	98.23
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.15
d1vyxa_	60	IE1B protein (ORF K3), N-terminal domain {Kaposi's	98.1
d1wima_	94	UbcM4-interacting protein 4 (KIAA0161) {Human (Hom	98.05
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.01
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	97.87
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	97.85
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	97.84
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	97.74
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	97.66
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	97.61
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	97.59
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	97.48
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	97.47
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	97.46
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	97.43
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	97.38
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	97.37
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	97.32
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	97.28
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	97.2
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	97.17
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	97.1
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	97.06
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	96.99
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	96.9
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	96.88
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	96.75
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	96.66
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	96.48
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	96.31
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	96.27
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	96.14
d2csva1	59	Tripartite motif-containing protein 29 {Human (Hom	96.09
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	95.71
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	95.63
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	95.27
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	94.76
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	94.19
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	94.1
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	93.74
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	92.52
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	92.38
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	92.34
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	91.56
d2dida1	40	Tripartite motif-containing protein 39 {Human (Hom	89.18
d2jnea1	71	Hypothetical protein YfgJ {Escherichia coli [TaxId	87.95
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	83.59
d2djaa1	71	Midline-2 {Human (Homo sapiens) [TaxId: 9606]}	83.14
d1wr0a1	77	Vacuolar sorting protein 4b (VPS4B, SKD1 protein)	81.83
d1frea_	39	Nuclear factor XNF7 {African clawed frog (Xenopus	81.23
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	80.03

>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.45  E-value=1.1e-14  Score=100.92  Aligned_cols=61  Identities=20%  Similarity=0.271  Sum_probs=54.6

Q ss_pred             CCcccccccccccCCCeecccCCcchHHhHhcCC-----CCCCCCcccc--cccccHHHHHHHHHHHhc
Q 020453           22 GPLSCMICQALLFECSKCTPCSHVYCKACISRFK-----DCPLCGADIE--KIEADTTLQDVVDRFIEG   83 (326)
Q Consensus        22 ~~l~C~iC~~~l~~~p~~l~C~h~fC~~Cl~~~~-----~CP~Cr~~~~--~~~~n~~l~~~~~~~~~~   83 (326)
                      ++|.||||+++ +.+|++++|||+||+.||.+|+     .||.|+..+.  ++.+|..|+++++.+...
T Consensus         6 ~~l~CpIc~~l-~~dPv~~~cGhtfc~~ci~~~l~~~~~~cP~c~~~l~~~~l~pN~~L~~~I~~~l~~   73 (80)
T d2c2la2           6 DYLCGKISFEL-MREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAMKEVIDAFISE   73 (80)
T ss_dssp             STTBCTTTCSB-CSSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCEECHHHHHHHHHHHTT
T ss_pred             ccccCcCcCch-hhhhcccCCcCeecHHHHHHHHhcCCccCCCccccccccccccHHHHHHHHHHHHHH
Confidence            78999999999 5779999999999999999885     3999999887  488999999999998654

>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: E3 ubiquitin ligase PUB14
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.42  E-value=2.3e-14  Score=98.74  Aligned_cols=61  Identities=16%  Similarity=0.368  Sum_probs=54.4

Q ss_pred             CCcccccccccccCCCeecccCCcchHHhHhcCCC-----CCCCCcccc--cccccHHHHHHHHHHHhc
Q 020453           22 GPLSCMICQALLFECSKCTPCSHVYCKACISRFKD-----CPLCGADIE--KIEADTTLQDVVDRFIEG   83 (326)
Q Consensus        22 ~~l~C~iC~~~l~~~p~~l~C~h~fC~~Cl~~~~~-----CP~Cr~~~~--~~~~n~~l~~~~~~~~~~   83 (326)
                      ++|.||||+++ +.+|++++|||+||+.||..|+.     ||.|+..+.  .+.+|..|+++++.+...
T Consensus         7 ~~l~CpIc~~~-m~dPV~~~cgh~fc~~ci~~~~~~~~~~cP~~~~~l~~~~l~pN~~L~~~I~~~~~~   74 (78)
T d1t1ha_           7 EYFRCPISLEL-MKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVLKSLIALWCES   74 (78)
T ss_dssp             SSSSCTTTSCC-CSSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCEECTTTHHHHHHHHHH
T ss_pred             ccCCCcCcCch-hhCceEccCCCcchHHHHHHHHHHCCCCCCcccccCCcccccchHHHHHHHHHHHHH
Confidence            78999999999 57799999999999999998853     999999887  488899999999988653

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: bard1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=9.2e-14  Score=99.86  Aligned_cols=61  Identities=21%  Similarity=0.610  Sum_probs=53.2

Q ss_pred             CCcccccccccccCCCeec-ccCCcchHHhHhcCCC--CCCCCcccc--cccccHHHHHHHHHHHhc
Q 020453           22 GPLSCMICQALLFECSKCT-PCSHVYCKACISRFKD--CPLCGADIE--KIEADTTLQDVVDRFIEG   83 (326)
Q Consensus        22 ~~l~C~iC~~~l~~~p~~l-~C~h~fC~~Cl~~~~~--CP~Cr~~~~--~~~~n~~l~~~~~~~~~~   83 (326)
                      +.|+|+||+++ +.+|+++ +|||+||..||.+|+.  ||.||..+.  ++.+|..+.++++.+...
T Consensus        21 ~~l~C~IC~~~-~~~pv~~~~CgH~fC~~Ci~~~~~~~CP~Cr~~~~~~~l~~n~~l~~lv~~~~~~   86 (97)
T d1jm7b_          21 KLLRCSRCTNI-LREPVCLGGCEHIFCSNCVSDCIGTGCPVCYTPAWIQDLKINRQLDSMIQLCSKL   86 (97)
T ss_dssp             HTTSCSSSCSC-CSSCBCCCSSSCCBCTTTGGGGTTTBCSSSCCBCSCSSCCCCHHHHHHHHHHHHH
T ss_pred             hcCCCccCCch-hhcCceeCCCCCchhHHHHHHHHhccccccCCcCchhhCcccHHHHHHHHHHHHH
Confidence            67899999999 5779986 8999999999999975  999998776  588999999999877653

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=2.1e-14  Score=104.54  Aligned_cols=60  Identities=32%  Similarity=0.822  Sum_probs=51.7

Q ss_pred             CCcccccccccccCCCeecccCCcchHHhHhcCC-------CCCCCCcccc--cccccHHHHHHHHHHHh
Q 020453           22 GPLSCMICQALLFECSKCTPCSHVYCKACISRFK-------DCPLCGADIE--KIEADTTLQDVVDRFIE   82 (326)
Q Consensus        22 ~~l~C~iC~~~l~~~p~~l~C~h~fC~~Cl~~~~-------~CP~Cr~~~~--~~~~n~~l~~~~~~~~~   82 (326)
                      +.|.||||+++ +.+|++++|||+||..||..|+       .||.||..+.  .+.+|..+.++++.+..
T Consensus        20 ~~l~CpIC~~~-~~~pv~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~~ve~l~~   88 (103)
T d1jm7a_          20 KILECPICLEL-IKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQESTRFSQLVEELLK   88 (103)
T ss_dssp             HHTSCSSSCCC-CSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCBCCCSSSHHHHHHHH
T ss_pred             cCcCCCccCch-hCCeEEcCCCCchhhHHHHHHHHHCCCCCcCcCCCCcCChhhCCcCHHHHHHHHHHHH
Confidence            46899999999 5779999999999999998874       4999999887  57888888888887754

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=4.2e-13  Score=85.29  Aligned_cols=44  Identities=36%  Similarity=0.844  Sum_probs=39.1

Q ss_pred             cCCcccccccccccCCCeecccCCcchHHhHhcCC-CCCCCCcccc
Q 020453           21 IGPLSCMICQALLFECSKCTPCSHVYCKACISRFK-DCPLCGADIE   65 (326)
Q Consensus        21 ~~~l~C~iC~~~l~~~p~~l~C~h~fC~~Cl~~~~-~CP~Cr~~~~   65 (326)
                      ++.|.|+||++. +.+|++++|||+||..||.+|. .||.||..+.
T Consensus         4 ~~~l~C~IC~~~-~~~p~~lpCgH~fC~~Ci~~~~~~CP~Cr~~~~   48 (56)
T d1bora_           4 FQFLRCQQCQAE-AKCPKLLPCLHTLCSGCLEASGMQCPICQAPWP   48 (56)
T ss_dssp             CCCSSCSSSCSS-CBCCSCSTTSCCSBTTTCSSSSSSCSSCCSSSS
T ss_pred             cCCCCCcccCcc-cCCCEEecCCCHHhHHHHHcCCCcCcCCCCccc
Confidence            356899999999 5779999999999999999875 5999999876

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.29  E-value=2.1e-13  Score=94.62  Aligned_cols=44  Identities=32%  Similarity=0.763  Sum_probs=39.1

Q ss_pred             CCcccccccccccCCCeecccCCcchHHhHhcCC-----CCCCCCccccc
Q 020453           22 GPLSCMICQALLFECSKCTPCSHVYCKACISRFK-----DCPLCGADIEK   66 (326)
Q Consensus        22 ~~l~C~iC~~~l~~~p~~l~C~h~fC~~Cl~~~~-----~CP~Cr~~~~~   66 (326)
                      +.++|+||.+. +.+|++++|||+||+.||.+|+     .||.||.++..
T Consensus        22 ~~l~C~IC~~~-~~~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~p~~~   70 (86)
T d1rmda2          22 KSISCQICEHI-LADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFP   70 (86)
T ss_dssp             HHTBCTTTCSB-CSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred             cCcCCccCCcc-hhcceecCCCChhhHHHHHHHHhhCCCcCcccCCCCCh
Confidence            46899999999 5779999999999999999986     39999998873

>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Ubiquitin conjugation factor E4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=8.9e-12  Score=89.03  Aligned_cols=62  Identities=18%  Similarity=0.252  Sum_probs=55.2

Q ss_pred             CCcccccccccccCCCeecccCC-cchHHhHhcCCC----CCCCCcccc--cccccHHHHHHHHHHHhcc
Q 020453           22 GPLSCMICQALLFECSKCTPCSH-VYCKACISRFKD----CPLCGADIE--KIEADTTLQDVVDRFIEGH   84 (326)
Q Consensus        22 ~~l~C~iC~~~l~~~p~~l~C~h-~fC~~Cl~~~~~----CP~Cr~~~~--~~~~n~~l~~~~~~~~~~~   84 (326)
                      ++|.||||+.+ +.+||+++|+| +||+.||.+|+.    ||.|+..+.  .+.+|..|++.++.+....
T Consensus        21 ~~f~CPI~~~l-m~dPV~~~~~~~ty~r~~I~~~l~~~~~~P~~~~~l~~~~L~pN~~Lr~~I~~~~~~~   89 (98)
T d1wgma_          21 DEFLDPIMSTL-MCDPVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQIRPNTELKEKIQRWLAER   89 (98)
T ss_dssp             TTTBCTTTCSB-CSSEEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTTTSEECHHHHHHHHHHHHHS
T ss_pred             HHhCCcCchhH-HHHHHhcccccchhhHHHHHHHHHhcCCcccccccccchhhcchHHHHHHHHHHHHHH
Confidence            68999999999 57799999875 899999999975    999999988  4889999999999988754

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=2e-11  Score=83.56  Aligned_cols=44  Identities=30%  Similarity=0.816  Sum_probs=38.1

Q ss_pred             CCcccccccccccCCCeecccCCcchHHhHhcCC-----CCCCCCccccc
Q 020453           22 GPLSCMICQALLFECSKCTPCSHVYCKACISRFK-----DCPLCGADIEK   66 (326)
Q Consensus        22 ~~l~C~iC~~~l~~~p~~l~C~h~fC~~Cl~~~~-----~CP~Cr~~~~~   66 (326)
                      ....|+||++. +.+|++++|||.||..||.+|+     .||.||..+..
T Consensus        22 ~~~~C~IC~~~-~~~~~~~~CgH~fC~~Ci~~wl~~~~~~CP~Cr~~i~~   70 (79)
T d1fbva4          22 TFQLCKICAEN-DKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKG   70 (79)
T ss_dssp             CTTBCTTTSSS-BCCEECSSSCCEECHHHHHHHHHTTCCSCTTTCCCCCC
T ss_pred             CCCCCccCCCc-CCCeEEeCCCCeeeHHHHHHHHHHCcCcCCCCCcCccC
Confidence            34579999999 5779999999999999998884     39999998874

>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Pre-mRNA splicing factor Prp19
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.01  E-value=1.8e-11  Score=77.93  Aligned_cols=41  Identities=10%  Similarity=0.277  Sum_probs=36.4

Q ss_pred             cccccccccccCCCeec-ccCCcchHHhHhcCCC----CCCCCcccc
Q 020453           24 LSCMICQALLFECSKCT-PCSHVYCKACISRFKD----CPLCGADIE   65 (326)
Q Consensus        24 l~C~iC~~~l~~~p~~l-~C~h~fC~~Cl~~~~~----CP~Cr~~~~   65 (326)
                      |.|+||++. +.+|+.+ .|||+||+.||.+|+.    ||.||..+.
T Consensus         1 l~C~Ic~~~-~~~Pv~~~~cGh~fc~~cI~~~l~~~~~CP~c~~~l~   46 (56)
T d2baya1           1 MLCAISGKV-PRRPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLS   46 (56)
T ss_dssp             CCCTTTCSC-CSSEEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCC
T ss_pred             CCCccCCch-HHhcCccCCCCCcccHHHHHHHHhhccCCCccCCcCC
Confidence            689999999 5779987 5999999999999963    999999876

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: TFIIH Mat1 subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.00  E-value=2.1e-11  Score=80.17  Aligned_cols=45  Identities=22%  Similarity=0.755  Sum_probs=36.7

Q ss_pred             cCCcccccccccccCCC----eecccCCcchHHhHhcCC-----CCCCCCcccc
Q 020453           21 IGPLSCMICQALLFECS----KCTPCSHVYCKACISRFK-----DCPLCGADIE   65 (326)
Q Consensus        21 ~~~l~C~iC~~~l~~~p----~~l~C~h~fC~~Cl~~~~-----~CP~Cr~~~~   65 (326)
                      +++..||||++.++.+|    +.++|||.||..||.+|+     .||.||+.+.
T Consensus         1 ~dd~~CpIC~~~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~~CP~CR~~i~   54 (65)
T d1g25a_           1 MDDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLR   54 (65)
T ss_dssp             CCTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCS
T ss_pred             CCCCCCCcCCceeecCCceEEEeCccChHhhHHHHHHHhCcCcCCCCCCCcCcc
Confidence            36789999998644433    567999999999999985     3999999876

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

Probab=98.99  E-value=2.1e-11  Score=81.02  Aligned_cols=43  Identities=37%  Similarity=0.867  Sum_probs=35.8

Q ss_pred             cccccccccccCCCeecccCCcchHHhHhcCC----CCCCCCccccc
Q 020453           24 LSCMICQALLFECSKCTPCSHVYCKACISRFK----DCPLCGADIEK   66 (326)
Q Consensus        24 l~C~iC~~~l~~~p~~l~C~h~fC~~Cl~~~~----~CP~Cr~~~~~   66 (326)
                      -.|+||++.+.+.++.++|||+||..||.+|+    .||.||..+..
T Consensus         6 d~C~IC~~~~~~~~~~~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~i~~   52 (68)
T d1chca_           6 ERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVES   52 (68)
T ss_dssp             CCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCCC
T ss_pred             CCCccCCcCccCCcEEeCCCCcCcHHHHHHHHHhCCcCCCCCcchHh
Confidence            35999999954545668999999999999996    49999998763

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Not-4 N-terminal RING finger domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.88  E-value=2.3e-10  Score=71.45  Aligned_cols=42  Identities=24%  Similarity=0.568  Sum_probs=34.1

Q ss_pred             cccccccccccC---CCeecccCCcchHHhHhcCCC-----CCCCCcccc
Q 020453           24 LSCMICQALLFE---CSKCTPCSHVYCKACISRFKD-----CPLCGADIE   65 (326)
Q Consensus        24 l~C~iC~~~l~~---~p~~l~C~h~fC~~Cl~~~~~-----CP~Cr~~~~   65 (326)
                      +.||||++.+..   .++.++|||.||..|+.+|..     ||.||+++.
T Consensus         1 leCpICl~~~~~~~~~~~~~~CgH~~c~~C~~~w~~~~~~~CP~CR~~~~   50 (52)
T d1ur6b_           1 VECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYP   50 (52)
T ss_dssp             CEETTTTEECCGGGTTCCSSSSSCCCCHHHHHHHTTTSCCBCTTTCCBCS
T ss_pred             CCCcCCChhhhCCCceEEecCCCCccchHHHHHHHhhcCCCCCccCCcCC
Confidence            579999997422   256679999999999999863     999999875

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=98.77  E-value=1.6e-09  Score=68.21  Aligned_cols=44  Identities=25%  Similarity=0.676  Sum_probs=35.0

Q ss_pred             cCCcccccccccccC--CCeec-ccCCcchHHhHhcCCC----CCCCCccc
Q 020453           21 IGPLSCMICQALLFE--CSKCT-PCSHVYCKACISRFKD----CPLCGADI   64 (326)
Q Consensus        21 ~~~l~C~iC~~~l~~--~p~~l-~C~h~fC~~Cl~~~~~----CP~Cr~~~   64 (326)
                      .+...|+||++.+..  ..+.+ +|+|.||..|+.+|+.    ||.||..+
T Consensus         3 ed~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~Wl~~~~~CP~CR~~i   53 (55)
T d1iyma_           3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTV   53 (55)
T ss_dssp             CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCS
T ss_pred             CCCCCCeEECccccCCCEEEEeCCCCCcccHHHHHHHHHhCCcCCCCCCEe
Confidence            356789999998432  24445 5999999999999975    99999875

>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Deltex protein 2 RING-H2 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.32  E-value=6.7e-08  Score=70.69  Aligned_cols=44  Identities=27%  Similarity=0.612  Sum_probs=34.7

Q ss_pred             CCcccccccccccCC-----------------CeecccCCcchHHhHhcCC---------CCCCCCcccc
Q 020453           22 GPLSCMICQALLFEC-----------------SKCTPCSHVYCKACISRFK---------DCPLCGADIE   65 (326)
Q Consensus        22 ~~l~C~iC~~~l~~~-----------------p~~l~C~h~fC~~Cl~~~~---------~CP~Cr~~~~   65 (326)
                      .+-.|+||++.|...                 ...++|+|.||..||..|+         .||.||..+.
T Consensus        24 ~~~~C~IC~e~l~~~~~~~~~~~~~~~~~~~~~~~~~CgH~FH~~Ci~~Wl~~~~~~~~~~CP~CR~~~~   93 (114)
T d1v87a_          24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYG   93 (114)
T ss_dssp             CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSS
T ss_pred             ccccccchhheecccccccccccccccccccceEECCCCChhhHHHHHHHHHhcCcCCCCccccccchhc
Confidence            345799999975331                 2467899999999999985         3999998765

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=98.32  E-value=1.8e-05  Score=60.49  Aligned_cols=114  Identities=11%  Similarity=0.030  Sum_probs=90.8

Q ss_pred             HHHhCCchhHhhHHHHHHHHHHhCCCChh-HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCch
Q 020453          175 CRAMGDADAAVAYFADSVEFLMKLPMDDL-EIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQ  253 (326)
Q Consensus       175 ~~~~h~~H~~~~~~e~~~~~~~~L~~~~~-~~~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~  253 (326)
                      ....|++..++..++++.++...+..... ...........+++.....+|++++|+..|.+++++..+........   
T Consensus        19 ~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~---   95 (156)
T d2hr2a1          19 QLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE---   95 (156)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH---
T ss_pred             HHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccc---
Confidence            34678899999999999988877654221 12334456788999999999999999999999999988765544432   


Q ss_pred             hhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 020453          254 VLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL  291 (326)
Q Consensus       254 ~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l  291 (326)
                      ....+..+.++|.++..+|++++|++.|++++++..+.
T Consensus        96 ~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~  133 (156)
T d2hr2a1          96 GKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER  133 (156)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred             cchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHh
Confidence            22345678899999999999999999999999999876

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=98.31  E-value=1.3e-06  Score=67.26  Aligned_cols=114  Identities=11%  Similarity=0.109  Sum_probs=85.5

Q ss_pred             HHHHHHHH--HHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 020453          209 LSVSLNKI--GDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIK  286 (326)
Q Consensus       209 i~~~~~~l--~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~  286 (326)
                      ++.+...+  +......|+|++|+..|++++++.....+...  .......+..++++|.++..+|++++|++.+++++.
T Consensus         6 ~a~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~--~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~   83 (156)
T d2hr2a1           6 VVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEA--FDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALH   83 (156)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSC--CCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhh--cccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhh
Confidence            44455555  55666789999999999999998776433222  122334577899999999999999999999999999


Q ss_pred             HHHHh-hcCCCc----hhHHhhccchhhhHHHHhHHhcCcccccC
Q 020453          287 RLESL-TLKPEE----AGLEQRCWNSSTTNFQKNHLNQLPKFRSA  326 (326)
Q Consensus       287 ~~~~l-~~~p~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (326)
                      +..+. ...+..    +....++  +..+..+|++.+++..|++|
T Consensus        84 ~~~~~~~~~~~~~~~~~~a~~~~--g~~~~~lg~~eeA~~~~~~A  126 (156)
T d2hr2a1          84 YFNRRGELNQDEGKLWISAVYSR--ALALDGLGRGAEAMPEFKKV  126 (156)
T ss_dssp             HHHHHCCTTSTHHHHHHHHHHHH--HHHHHHTTCHHHHHHHHHHH
T ss_pred             cccccccccccccchhHHHHhhh--HHHHHHHHHHHHHHHHHHHH
Confidence            99887 333333    2345667  88888999999988888764

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.27  E-value=4.1e-06  Score=58.62  Aligned_cols=77  Identities=14%  Similarity=0.161  Sum_probs=63.5

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcC
Q 020453          215 KIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLK  294 (326)
Q Consensus       215 ~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~  294 (326)
                      +||.+....|+|.+|+..|++++++.......       ..+.+..+.++|.++..+|++++|+..|++++++      +
T Consensus        10 ~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~-------~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l------~   76 (95)
T d1tjca_          10 ELGKVAYTEADYYHTELWMEQALRQLDEGEIS-------TIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL------D   76 (95)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCC-------SSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------C
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHhhhhcc-------CccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh------C
Confidence            78999999999999999999999876542211       2246788999999999999999999999988765      6


Q ss_pred             CCchhHHhhc
Q 020453          295 PEEAGLEQRC  304 (326)
Q Consensus       295 p~~~~~~~~~  304 (326)
                      |+++....|+
T Consensus        77 P~~~~a~~Nl   86 (95)
T d1tjca_          77 PEHQRANGNL   86 (95)
T ss_dssp             TTCHHHHHHH
T ss_pred             cCCHHHHHHH
Confidence            7777777766

>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.23  E-value=1.4e-07  Score=65.43  Aligned_cols=29  Identities=34%  Similarity=0.707  Sum_probs=25.1

Q ss_pred             CeecccCCcchHHhHhcCCC----CCCCCcccc
Q 020453           37 SKCTPCSHVYCKACISRFKD----CPLCGADIE   65 (326)
Q Consensus        37 p~~l~C~h~fC~~Cl~~~~~----CP~Cr~~~~   65 (326)
                      ++.++|||.|+..||.+|+.    ||+||..+.
T Consensus        52 ~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~   84 (88)
T d3dplr1          52 VAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE   84 (88)
T ss_dssp             EEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred             eEEccccCcccHHHHHHHHHHCCcCCCCCCccc
Confidence            35679999999999999974    999998764

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.15  E-value=7e-06  Score=69.57  Aligned_cols=138  Identities=9%  Similarity=0.013  Sum_probs=105.2

Q ss_pred             HHHHHhCCchhHhhHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCc
Q 020453          173 DCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPS  252 (326)
Q Consensus       173 ~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~  252 (326)
                      .+....++..++...++.+.+...+++.     .........+++.+....+++++|+..|++++++......       
T Consensus        45 ~~y~~~~~~~~A~~~y~kA~~~~~~~~~-----~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~-------  112 (290)
T d1qqea_          45 TIYRLRKELNLAGDSFLKAADYQKKAGN-----EDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQ-------  112 (290)
T ss_dssp             HHHHHTTCTHHHHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-------
T ss_pred             HHHHHCcCHHHHHHHHHHHHHHHHHcCC-----CHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhccc-------
Confidence            5556778888999998888887776655     3345678889999999999999999999999998765321       


Q ss_pred             hhhhHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhcCCCchhHHhhccchhhhHHHHhHHhcCccccc
Q 020453          253 QVLDVAVSLAKVADVDRS-IGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRS  325 (326)
Q Consensus       253 ~~~~la~~l~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (326)
                       ....+..+.+++.++.. .|++++|++.|++++++.+.....+....+..++  +..+..+|++.+++..|++
T Consensus       113 -~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~l--a~~~~~~g~y~~A~~~~~~  183 (290)
T d1qqea_         113 -FRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKC--ADLKALDGQYIEASDIYSK  183 (290)
T ss_dssp             -HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH--HHHHHHTTCHHHHHHHHHH
T ss_pred             -chhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHH--HHHHHHcChHHHHHHHHHH
Confidence             22456778889988865 6999999999999999887653333334456667  7777777788877776654

>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: IE1B protein (ORF K3), N-terminal domain
species: Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]

Probab=98.10  E-value=2.9e-07  Score=58.79  Aligned_cols=43  Identities=21%  Similarity=0.594  Sum_probs=35.7

Q ss_pred             CCcccccccccccCCCeeccc-----CCcchHHhHhcCC------CCCCCCcccc
Q 020453           22 GPLSCMICQALLFECSKCTPC-----SHVYCKACISRFK------DCPLCGADIE   65 (326)
Q Consensus        22 ~~l~C~iC~~~l~~~p~~l~C-----~h~fC~~Cl~~~~------~CP~Cr~~~~   65 (326)
                      +...|+||++. ++++...+|     +|.|+..||..|+      .||.||+.+.
T Consensus         5 d~~~C~IC~~~-~~~~~~~~c~c~~c~h~~H~~Cl~~W~~~~~~~~CP~Cr~~~~   58 (60)
T d1vyxa_           5 DVPVCWICNEE-LGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN   58 (60)
T ss_dssp             SCCEETTTTEE-CSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred             CCCCCccCCcc-CCCceeEecccCCCCCEEcHHHHHHHHhhCCCCCCcccCCeee
Confidence            56789999998 566777776     4999999999995      3999998864

>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: UbcM4-interacting protein 4 (KIAA0161)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.05  E-value=3.3e-07  Score=64.40  Aligned_cols=42  Identities=19%  Similarity=0.661  Sum_probs=31.5

Q ss_pred             CCcccccccccccC-C-CeecccCCcchHHhHhcCC------------CCCCCCcc
Q 020453           22 GPLSCMICQALLFE-C-SKCTPCSHVYCKACISRFK------------DCPLCGAD   63 (326)
Q Consensus        22 ~~l~C~iC~~~l~~-~-p~~l~C~h~fC~~Cl~~~~------------~CP~Cr~~   63 (326)
                      ....|+||++.+.. + ++.++|+|.||..|+..|+            .||.|+..
T Consensus         4 ~~~~C~IC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~   59 (94)
T d1wima_           4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACP   59 (94)
T ss_dssp             SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCS
T ss_pred             CCCcCccCCCcccCCceEEECCCCCEeCCcCHHHHHHHHHhcCCccccCCcCCCCC
Confidence            45689999997322 2 5567899999999998774            29986654

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.01  E-value=6e-06  Score=61.11  Aligned_cols=99  Identities=12%  Similarity=0.076  Sum_probs=69.3

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 020453          210 SVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLE  289 (326)
Q Consensus       210 ~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~  289 (326)
                      +...+++|......++|++|+..|.+++++       .+.       .+..+.++|.++..+|++++|++.+++++++..
T Consensus         4 a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~-------~p~-------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~   69 (128)
T d1elra_           4 ALKEKELGNDAYKKKDFDTALKHYDKAKEL-------DPT-------NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGR   69 (128)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CTT-------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------Ccc-------cHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCc
Confidence            345678999999999999999999999876       232       246789999999999999999999999998875


Q ss_pred             Hh-hcCCCchhHHhhccchhhhHHHHhHHhcCcccc
Q 020453          290 SL-TLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFR  324 (326)
Q Consensus       290 ~l-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (326)
                      +. ...+..+.+..++  +..+..++++..++..|+
T Consensus        70 ~~~~~~~~~a~~~~~l--g~~~~~~~~~~~A~~~~~  103 (128)
T d1elra_          70 ENREDYRQIAKAYARI--GNSYFKEEKYKDAIHFYN  103 (128)
T ss_dssp             HSTTCHHHHHHHHHHH--HHHHHHTTCHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHH--HHHHHHhCCHHHHHHHHH
Confidence            43 1111112233333  444444445555554443

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.87  E-value=9.1e-06  Score=63.25  Aligned_cols=109  Identities=10%  Similarity=0.039  Sum_probs=77.6

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhh-hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 020453          209 LSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVL-DVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR  287 (326)
Q Consensus       209 i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~-~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~  287 (326)
                      .+..+++.|......+++++|+..|++++++................ -.+..+.++|.++..+|++++|+..+++++.+
T Consensus        12 ~a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~   91 (170)
T d1p5qa1          12 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL   91 (170)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhc
Confidence            34556778899999999999999999999864321111110000111 13455678999999999999999998888765


Q ss_pred             HHHhhcCCCchhHHhhccchhhhHHHHhHHhcCccccc
Q 020453          288 LESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRS  325 (326)
Q Consensus       288 ~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (326)
                            +|.++....++  +.++..+|++..++..|++
T Consensus        92 ------~p~~~~a~~~~--g~~~~~~g~~~~A~~~~~~  121 (170)
T d1p5qa1          92 ------DSNNEKGLSRR--GEAHLAVNDFELARADFQK  121 (170)
T ss_dssp             ------CTTCHHHHHHH--HHHHHHTTCHHHHHHHHHH
T ss_pred             ------cccchhhhHHH--HHHHHHhhhHHHHHHHHHH
Confidence                  57777777777  8888888888888777765

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.85  E-value=1.6e-05  Score=62.76  Aligned_cols=92  Identities=14%  Similarity=0.138  Sum_probs=63.1

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 020453          212 SLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL  291 (326)
Q Consensus       212 ~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l  291 (326)
                      .+...|......|++++|+..|.+++++       .+.+       +..+.++|.++..+|++++|+..|++++.     
T Consensus         6 ~l~~~Gn~~~~~g~~~~Ai~~~~kal~~-------~p~~-------~~~~~~lg~~y~~~~~~~~Ai~~~~~al~-----   66 (201)
T d2c2la1           6 ELKEQGNRLFVGRKYPEAAACYGRAITR-------NPLV-------AVYYTNRALCYLKMQQPEQALADCRRALE-----   66 (201)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CSCC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHTT-----
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCCC-------HHHHHhHHHHHhhhhhhhhhhHHHHHHHH-----
Confidence            3456788888888888888888888765       2221       45667777778888887777777776643     


Q ss_pred             hcCCCchhHHhhccchhhhHHHHhHHhcCccccc
Q 020453          292 TLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRS  325 (326)
Q Consensus       292 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (326)
                       .+|..+....++  +.++..+|++.+++..|++
T Consensus        67 -l~p~~~~a~~~l--g~~~~~l~~~~~A~~~~~~   97 (201)
T d2c2la1          67 -LDGQSVKAHFFL--GQCQLEMESYDEAIANLQR   97 (201)
T ss_dssp             -SCTTCHHHHHHH--HHHHHHTTCHHHHHHHHHH
T ss_pred             -hCCCcHHHHHHH--HHHHHHCCCHHHHHHHHHH
Confidence             356665555666  6666677777766666654

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.84  E-value=2.4e-05  Score=60.57  Aligned_cols=109  Identities=15%  Similarity=0.150  Sum_probs=79.6

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCC--CchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 020453          209 LSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNV--PSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIK  286 (326)
Q Consensus       209 i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~--~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~  286 (326)
                      +.......+......+++++|+..|.++++............  .......+..+.++|.++..+|++++|+..++++++
T Consensus        26 ~a~~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~  105 (169)
T d1ihga1          26 ISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALE  105 (169)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhh
Confidence            344556778888899999999999999998665433222111  112224566788899999999999999999888764


Q ss_pred             HHHHhhcCCCchhHHhhccchhhhHHHHhHHhcCccccc
Q 020453          287 RLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRS  325 (326)
Q Consensus       287 ~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (326)
                            .+|.++....++  +.++..++++.+++..|++
T Consensus       106 ------~~p~~~~a~~~~--g~~~~~l~~~~~A~~~~~~  136 (169)
T d1ihga1         106 ------IDPSNTKALYRR--AQGWQGLKEYDQALADLKK  136 (169)
T ss_dssp             ------TCTTCHHHHHHH--HHHHHHTTCHHHHHHHHHH
T ss_pred             ------hhhhhhhHHHhH--HHHHHHccCHHHHHHHHHH
Confidence                  467777766667  8888888888888777764

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.74  E-value=0.00029  Score=59.15  Aligned_cols=110  Identities=15%  Similarity=0.071  Sum_probs=83.8

Q ss_pred             HHHHHHHHHHHHhCCchhHhhHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHHHh
Q 020453          166 AVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKY-YGGDLQAARSYYVRSLNVRRDAV  244 (326)
Q Consensus       166 ~~l~~~C~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~~~~i~~~~~~l~~l~~-~~~~~~~a~~~~~~sl~~~~~~~  244 (326)
                      ..+...+.+....++...++..+..+.+.....+.     .........+++.+.. ..+++++|+..|.+++++.....
T Consensus        78 ~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~  152 (290)
T d1qqea_          78 NTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQ-----FRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQ  152 (290)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhccc-----chhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcC
Confidence            34555667777888999999998888888777654     2223456678888774 57999999999999998765421


Q ss_pred             hcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 020453          245 KRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRL  288 (326)
Q Consensus       245 ~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~  288 (326)
                      .        ....+..+.++|.++..+|++.+|++.|++++.+.
T Consensus       153 ~--------~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~  188 (290)
T d1qqea_         153 S--------VALSNKCFIKCADLKALDGQYIEASDIYSKLIKSS  188 (290)
T ss_dssp             C--------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred             c--------hhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhC
Confidence            1        12456778999999999999999999999877654

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=97.66  E-value=3e-05  Score=60.00  Aligned_cols=108  Identities=10%  Similarity=0.042  Sum_probs=72.8

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCC-chhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 020453          210 SVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVP-SQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRL  288 (326)
Q Consensus       210 ~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~-~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~  288 (326)
                      +......|......|+|++|+..|.+++.+............ ......+..+.|+|.++..+|++.+|+..+++++.+ 
T Consensus        15 a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l-   93 (168)
T d1kt1a1          15 AAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL-   93 (168)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhc-
Confidence            455677888889999999999999999986532111000000 011124556778999999999999999999988754 


Q ss_pred             HHhhcCCCchhHHhhccchhhhHHHHhHHhcCccccc
Q 020453          289 ESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRS  325 (326)
Q Consensus       289 ~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (326)
                           +|.+.....++  +..+..+|++..+...|++
T Consensus        94 -----~p~~~~a~~~~--~~~~~~l~~~~~A~~~~~~  123 (168)
T d1kt1a1          94 -----DSANEKGLYRR--GEAQLLMNEFESAKGDFEK  123 (168)
T ss_dssp             -----CTTCHHHHHHH--HHHHHHTTCHHHHHHHHHH
T ss_pred             -----ccchHHHHHHH--HHHHHHcCCHHHHHHHHHH
Confidence                 45555555555  6666666666666655543

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=97.61  E-value=0.00015  Score=59.22  Aligned_cols=96  Identities=14%  Similarity=0.078  Sum_probs=71.1

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 020453          208 TLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR  287 (326)
Q Consensus       208 ~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~  287 (326)
                      ..+...-.+|.+....|++++|+..|.+++++       .+.+       +..+.++|.++..+|++++|+..|++++.+
T Consensus        35 ~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l-------~p~~-------~~a~~~lg~~~~~~g~~~~A~~~~~~al~~  100 (259)
T d1xnfa_          35 ERAQLLYERGVLYDSLGLRALARNDFSQALAI-------RPDM-------PEVFNYLGIYLTQAGNFDAAYEAFDSVLEL  100 (259)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CCCC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHhhcc-------CCCC-------HHHHhhhchHHHHHHHHHHhhhhhhHHHHH
Confidence            34566778899999999999999999999876       2222       456788899999999999999888887764


Q ss_pred             HHHhhcCCCchhHHhhccchhhhHHHHhHHhcCccccc
Q 020453          288 LESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRS  325 (326)
Q Consensus       288 ~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (326)
                            +|..+....++  +.++..+|++..+...|++
T Consensus       101 ------~p~~~~a~~~l--g~~~~~~g~~~~A~~~~~~  130 (259)
T d1xnfa_         101 ------DPTYNYAHLNR--GIALYYGGRDKLAQDDLLA  130 (259)
T ss_dssp             ------CTTCTHHHHHH--HHHHHHTTCHHHHHHHHHH
T ss_pred             ------HhhhhhhHHHH--HHHHHHHhhHHHHHHHHHH
Confidence                  45555555556  6666666666666655543

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=97.59  E-value=5.8e-05  Score=57.37  Aligned_cols=108  Identities=8%  Similarity=0.004  Sum_probs=75.9

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCc--hhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 020453          211 VSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPS--QVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRL  288 (326)
Q Consensus       211 ~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~--~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~  288 (326)
                      ...+..|......++|.+|+..|.+++++.............  ...-.+..+.|+|.++..+|++++|++.+++++.+ 
T Consensus        18 ~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~-   96 (153)
T d2fbna1          18 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI-   96 (153)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhccccc-
Confidence            345667778888999999999999998754321110000000  00013456778999999999999999999987653 


Q ss_pred             HHhhcCCCchhHHhhccchhhhHHHHhHHhcCcccccC
Q 020453          289 ESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRSA  326 (326)
Q Consensus       289 ~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (326)
                           +|.+.....++  +..+..+|++.+++..|++|
T Consensus        97 -----~p~~~ka~~~~--g~~~~~lg~~~~A~~~~~~a  127 (153)
T d2fbna1          97 -----DKNNVKALYKL--GVANMYFGFLEEAKENLYKA  127 (153)
T ss_dssp             -----STTCHHHHHHH--HHHHHHHTCHHHHHHHHHHH
T ss_pred             -----cchhhhhhHHh--HHHHHHcCCHHHHHHHHHHH
Confidence                 67776666667  88888888888888777653

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.48  E-value=0.0003  Score=53.37  Aligned_cols=92  Identities=11%  Similarity=0.064  Sum_probs=52.8

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 020453          211 VSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLES  290 (326)
Q Consensus       211 ~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  290 (326)
                      ..+...|......|+|++|+..|++++++       .+.       .+..+.++|.++..+|++++|+..|++++++   
T Consensus        11 ~~l~~~gn~~~~~~~y~~A~~~~~~al~~-------~p~-------~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~---   73 (159)
T d1a17a_          11 EELKTQANDYFKAKDYENAIKFYSQAIEL-------NPS-------NAIYYGNRSLAYLRTECYGYALGDATRAIEL---   73 (159)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------STT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHhhhcccc-------chh-------hhhhhhhhHHHHHhccccchHHHHHHHHHHH---
Confidence            33445566667777777777777777654       121       1345566666666666666666666655543   


Q ss_pred             hhcCCCchhHHhhccchhhhHHHHhHHhcCcccc
Q 020453          291 LTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFR  324 (326)
Q Consensus       291 l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (326)
                         +|.++....++  +.++..+|++..++..|+
T Consensus        74 ---~p~~~~a~~~~--g~~~~~~g~~~eA~~~~~  102 (159)
T d1a17a_          74 ---DKKYIKGYYRR--AASNMALGKFRAALRDYE  102 (159)
T ss_dssp             ---CTTCHHHHHHH--HHHHHHTTCHHHHHHHHH
T ss_pred             ---cccchHHHHHH--HHHHHHcCCHHHHHHHHH
Confidence               34444444444  555555555555544443

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.47  E-value=0.0054  Score=46.75  Aligned_cols=116  Identities=14%  Similarity=0.099  Sum_probs=84.2

Q ss_pred             HHHHHHHHHhCCchhHhhHHHHHHHHHHhCCCCh----hHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHh
Q 020453          169 GMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDD----LEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAV  244 (326)
Q Consensus       169 ~~~C~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~----~~~~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~  244 (326)
                      .--|...+..+++..++..+..+...........    ............+++.+...++++++|+..+++++++     
T Consensus        17 ~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~-----   91 (170)
T d1p5qa1          17 KERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL-----   91 (170)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhc-----
Confidence            3344555678899999988888876644332211    2233344456678999999999999999999999877     


Q ss_pred             hcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHhhc
Q 020453          245 KRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRC  304 (326)
Q Consensus       245 ~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~p~~~~~~~~~  304 (326)
                        .+.+       +..+.++|.++..+|++++|+..|++++++      +|.+..+...+
T Consensus        92 --~p~~-------~~a~~~~g~~~~~~g~~~~A~~~~~~al~l------~P~n~~~~~~l  136 (170)
T d1p5qa1          92 --DSNN-------EKGLSRRGEAHLAVNDFELARADFQKVLQL------YPNNKAAKTQL  136 (170)
T ss_dssp             --CTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CSSCHHHHHHH
T ss_pred             --cccc-------hhhhHHHHHHHHHhhhHHHHHHHHHHHHHh------CCCCHHHHHHH
Confidence              3332       456888999999999999999999987664      56666666555

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.46  E-value=0.0017  Score=47.22  Aligned_cols=100  Identities=14%  Similarity=0.208  Sum_probs=79.1

Q ss_pred             HHHHHHHHHhCCchhHhhHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCC
Q 020453          169 GMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHS  248 (326)
Q Consensus       169 ~~~C~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~  248 (326)
                      +..|......+++..++..+..+.+.    .+..       .....+++.+...++++++|+..|.+++++.....    
T Consensus         8 k~~G~~~~~~~~y~~Ai~~y~~al~~----~p~~-------~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~----   72 (128)
T d1elra_           8 KELGNDAYKKKDFDTALKHYDKAKEL----DPTN-------MTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENR----   72 (128)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHH----CTTC-------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHST----
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHh----Cccc-------HHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccH----
Confidence            34566666788999999888887765    3322       23677899999999999999999999998755422    


Q ss_pred             CCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 020453          249 NVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIK  286 (326)
Q Consensus       249 ~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~  286 (326)
                         .....++.++..+|.++..++++++|+++|++++.
T Consensus        73 ---~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~  107 (128)
T d1elra_          73 ---EDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLA  107 (128)
T ss_dssp             ---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             ---HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence               22346788899999999999999999999998875

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=97.43  E-value=0.00027  Score=50.42  Aligned_cols=89  Identities=10%  Similarity=0.072  Sum_probs=73.7

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcC
Q 020453          215 KIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLK  294 (326)
Q Consensus       215 ~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~  294 (326)
                      .+|......|++++|+..|++++++       .+.+       ...+.++|.++..+|++++|+..|++++++      +
T Consensus        21 ~~g~~~~~~g~~~~A~~~~~~al~~-------~p~~-------~~a~~~lg~~~~~~~~~~~A~~~~~~al~~------~   80 (112)
T d1hxia_          21 EEGLSMLKLANLAEAALAFEAVCQK-------EPER-------EEAWRSLGLTQAENEKDGLAIIALNHARML------D   80 (112)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHH-------STTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------C
T ss_pred             HHHHHHHHHhhhHHHHHHHhhhccc-------cccc-------chhhhhhhhhhhhhhhHHHhhccccccccc------c
Confidence            4677788899999999999998765       2322       567888999999999999999999877654      6


Q ss_pred             CCchhHHhhccchhhhHHHHhHHhcCccccc
Q 020453          295 PEEAGLEQRCWNSSTTNFQKNHLNQLPKFRS  325 (326)
Q Consensus       295 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (326)
                      |+++....++  +..+..+|++.+++..|++
T Consensus        81 p~~~~a~~~l--a~~y~~~g~~~~A~~~l~~  109 (112)
T d1hxia_          81 PKDIAVHAAL--AVSHTNEHNANAALASLRA  109 (112)
T ss_dssp             TTCHHHHHHH--HHHHHHHHHHHHHHHHHHH
T ss_pred             cccccchHHH--HHHHHHCCCHHHHHHHHHH
Confidence            8888888888  9999999999999887765

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.38  E-value=0.00046  Score=49.54  Aligned_cols=91  Identities=13%  Similarity=0.165  Sum_probs=68.2

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhh
Q 020453          213 LNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLT  292 (326)
Q Consensus       213 ~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l~  292 (326)
                      +.+.|......|++++|+..|.++++.       .+.       ....+.++|.++..+|++++|+..+.+++.+     
T Consensus         6 l~~~g~~~~~~g~~~eAi~~~~~al~~-------~p~-------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-----   66 (117)
T d1elwa_           6 LKEKGNKALSVGNIDDALQCYSEAIKL-------DPH-------NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL-----   66 (117)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH-------CTT-------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhc-------CCc-------chhhhhcccccccccccccccchhhhhHHHh-----
Confidence            345788888899999999999998764       233       2457788899999999999888888877654     


Q ss_pred             cCCCchhHHhhccchhhhHHHHhHHhcCccccc
Q 020453          293 LKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRS  325 (326)
Q Consensus       293 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (326)
                       +|.++....++  +.++..++++.+++..|++
T Consensus        67 -~p~~~~~~~~~--g~~~~~~~~~~~A~~~~~~   96 (117)
T d1elwa_          67 -KPDWGKGYSRK--AAALEFLNRFEEAKRTYEE   96 (117)
T ss_dssp             -CTTCHHHHHHH--HHHHHHTTCHHHHHHHHHH
T ss_pred             -ccchhhHHHHH--HHHHHHccCHHHHHHHHHH
Confidence             45665666666  7777777787777776654

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=97.37  E-value=0.0077  Score=45.67  Aligned_cols=122  Identities=12%  Similarity=0.051  Sum_probs=87.3

Q ss_pred             HHHHHHHhCCchhHhhHHHHHHHHHHhCCCCh----hHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhc
Q 020453          171 LGDCCRAMGDADAAVAYFADSVEFLMKLPMDD----LEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKR  246 (326)
Q Consensus       171 ~C~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~----~~~~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~  246 (326)
                      -|......++...++..+..+...........    ............+++.+...++++++|+..|++++++       
T Consensus        21 ~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l-------   93 (168)
T d1kt1a1          21 KGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL-------   93 (168)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhc-------
Confidence            34444577888899988888886654433221    2234445566778999999999999999999999866       


Q ss_pred             CCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHhhccchhhhHHHH
Q 020453          247 HSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQK  314 (326)
Q Consensus       247 ~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~  314 (326)
                      .+.+       ...+-++|.++..+|++++|+..|++++.      .+|++..+...+  ..+...++
T Consensus        94 ~p~~-------~~a~~~~~~~~~~l~~~~~A~~~~~~al~------l~P~n~~~~~~l--~~~~~~~~  146 (168)
T d1kt1a1          94 DSAN-------EKGLYRRGEAQLLMNEFESAKGDFEKVLE------VNPQNKAARLQI--FMCQKKAK  146 (168)
T ss_dssp             CTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH------SCTTCHHHHHHH--HHHHHHHH
T ss_pred             ccch-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH------hCCCCHHHHHHH--HHHHHHHH
Confidence            3332       45677889999999999999999888654      467776666655  44444444

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.32  E-value=0.0028  Score=48.28  Aligned_cols=121  Identities=15%  Similarity=0.169  Sum_probs=83.3

Q ss_pred             HHHHHHhCCchhHhhHHHHHHHHHHh---CCC--ChhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhc
Q 020453          172 GDCCRAMGDADAAVAYFADSVEFLMK---LPM--DDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKR  246 (326)
Q Consensus       172 C~~~~~~h~~H~~~~~~e~~~~~~~~---L~~--~~~~~~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~  246 (326)
                      +......+++..++..+..+......   ...  ....+.........+++.+...++++++|+..|.+++++       
T Consensus        34 ~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~-------  106 (169)
T d1ihga1          34 GNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI-------  106 (169)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-------
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhh-------
Confidence            33444667888887777766543221   111  112334555667788999999999999999999998765       


Q ss_pred             CCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHhhccchhhhHHHH
Q 020453          247 HSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQK  314 (326)
Q Consensus       247 ~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~  314 (326)
                      .+.       .+..+-++|.++..+|++++|+..|++++++      +|.+..+...+  ..+...+.
T Consensus       107 ~p~-------~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l------~p~n~~~~~~l--~~~~~~l~  159 (169)
T d1ihga1         107 DPS-------NTKALYRRAQGWQGLKEYDQALADLKKAQEI------APEDKAIQAEL--LKVKQKIK  159 (169)
T ss_dssp             CTT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHH--HHHHHHHH
T ss_pred             hhh-------hhhHHHhHHHHHHHccCHHHHHHHHHHHHHh------CCCCHHHHHHH--HHHHHHHH
Confidence            233       2456788999999999999999999988874      46665555555  44444444

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.28  E-value=0.0018  Score=54.35  Aligned_cols=92  Identities=16%  Similarity=0.165  Sum_probs=59.8

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 020453          212 SLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL  291 (326)
Q Consensus       212 ~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l  291 (326)
                      ....++.+....|++++|+..|+++++..       +.       ....+.++|.++..+|++++|++.|++++++    
T Consensus       174 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~-------p~-------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~----  235 (323)
T d1fcha_         174 VQCGLGVLFNLSGEYDKAVDCFTAALSVR-------PN-------DYLLWNKLGATLANGNQSEEAVAAYRRALEL----  235 (323)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred             cchhhHHHHHHHHHHhhhhcccccccccc-------cc-------cccchhhhhhcccccccchhHHHHHHHHHHH----
Confidence            34566777788889999999888876542       11       1344556677777777777777777666542    


Q ss_pred             hcCCCchhHHhhccchhhhHHHHhHHhcCccccc
Q 020453          292 TLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRS  325 (326)
Q Consensus       292 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (326)
                        +|.++....++  +.++..+|++.+++..|++
T Consensus       236 --~p~~~~a~~~l--g~~~~~~g~~~~A~~~~~~  265 (323)
T d1fcha_         236 --QPGYIRSRYNL--GISCINLGAHREAVEHFLE  265 (323)
T ss_dssp             --CTTCHHHHHHH--HHHHHHHTCHHHHHHHHHH
T ss_pred             --hhccHHHHHHH--HHHHHHCCCHHHHHHHHHH
Confidence              45555555556  6666666666666666554

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.20  E-value=0.00055  Score=53.82  Aligned_cols=134  Identities=15%  Similarity=0.013  Sum_probs=90.2

Q ss_pred             HHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhCCchhHhhHHHHHHHHHHhCCCChhHH
Q 020453          126 RAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEI  205 (326)
Q Consensus       126 ~~~~~~~~~~a~~~~~~c~~~l~~~l~~~~~~~~~C~~H~~~l~~~C~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~  205 (326)
                      ..+..|++++|...+...                 -+.+.+.+...+.+....+++..++..++.+.+.    .+.    
T Consensus        14 ~~~~~~d~~~Al~~~~~i-----------------~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~l----dp~----   68 (192)
T d1hh8a_          14 LAADKKDWKGALDAFSAV-----------------QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINR----DKH----   68 (192)
T ss_dssp             HHHHTTCHHHHHHHHHTS-----------------SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTT----
T ss_pred             HHHHCCCHHHHHHHHHhc-----------------CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHH----hhh----
Confidence            456788888887766411                 1112345566778888889998888888877643    222    


Q ss_pred             HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCC--CchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 020453          206 IHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNV--PSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQE  283 (326)
Q Consensus       206 ~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~--~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~  283 (326)
                         ...+..++|.+...+|++++|+..|++++...+.........  ..........+.++|.++..+|++++|++.++.
T Consensus        69 ---~~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~  145 (192)
T d1hh8a_          69 ---LAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLAL  145 (192)
T ss_dssp             ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             ---hhhhHHHHHHHHHhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence               244667899999999999999999999987532110000000  001112345678899999999999999998887


Q ss_pred             HHHH
Q 020453          284 AIKR  287 (326)
Q Consensus       284 ~~~~  287 (326)
                      ++.+
T Consensus       146 A~~~  149 (192)
T d1hh8a_         146 ATSM  149 (192)
T ss_dssp             HHTT
T ss_pred             HHhc
Confidence            6643

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=97.17  E-value=0.016  Score=43.10  Aligned_cols=116  Identities=12%  Similarity=0.095  Sum_probs=81.3

Q ss_pred             HHhCCchhHhhHHHHHHHHHHhCCCChhH-----HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCC
Q 020453          176 RAMGDADAAVAYFADSVEFLMKLPMDDLE-----IIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNV  250 (326)
Q Consensus       176 ~~~h~~H~~~~~~e~~~~~~~~L~~~~~~-----~~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~  250 (326)
                      ...++...++..+..+.............     ..........+++.+...++++++|+..|.+++++       .+.+
T Consensus        28 f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~-------~p~~  100 (153)
T d2fbna1          28 FKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI-------DKNN  100 (153)
T ss_dssp             HHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------STTC
T ss_pred             HHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhccccc-------cchh
Confidence            46678888888877777654433322111     12223345678999999999999999999998765       3332


Q ss_pred             CchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHhhccchhhhHHH
Q 020453          251 PSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQ  313 (326)
Q Consensus       251 ~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~  313 (326)
                             +..+-++|.++..+|++++|+..|++++.+      +|++..+...+  ..+..-+
T Consensus       101 -------~ka~~~~g~~~~~lg~~~~A~~~~~~al~l------~P~n~~~~~~l--~~~~~kl  148 (153)
T d2fbna1         101 -------VKALYKLGVANMYFGFLEEAKENLYKAASL------NPNNLDIRNSY--ELCVNKL  148 (153)
T ss_dssp             -------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH------STTCHHHHHHH--HHHHHHH
T ss_pred             -------hhhhHHhHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHH--HHHHHHH
Confidence                   356888999999999999999998887754      57777766655  4443333

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.10  E-value=0.0012  Score=51.28  Aligned_cols=98  Identities=12%  Similarity=-0.001  Sum_probs=76.9

Q ss_pred             HHHHHHHHHHhCCchhHhhHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcC
Q 020453          168 LGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRH  247 (326)
Q Consensus       168 l~~~C~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~  247 (326)
                      |+-.|......|++..++..+..+...    .+..       .....++|.+...+|++++|+..|.+++++       .
T Consensus         7 l~~~Gn~~~~~g~~~~Ai~~~~kal~~----~p~~-------~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l-------~   68 (201)
T d2c2la1           7 LKEQGNRLFVGRKYPEAAACYGRAITR----NPLV-------AVYYTNRALCYLKMQQPEQALADCRRALEL-------D   68 (201)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH----CSCC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-------C
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCC-------HHHHHhHHHHHhhhhhhhhhhHHHHHHHHh-------C
Confidence            444566666889999999888877655    2322       346678999999999999999999998755       3


Q ss_pred             CCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 020453          248 SNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLES  290 (326)
Q Consensus       248 ~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  290 (326)
                      +.       .+..+.++|.++..+|++++|+..|++++.+-..
T Consensus        69 p~-------~~~a~~~lg~~~~~l~~~~~A~~~~~~al~l~p~  104 (201)
T d2c2la1          69 GQ-------SVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE  104 (201)
T ss_dssp             TT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             CC-------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc
Confidence            33       2456788999999999999999999999887643

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.06  E-value=0.0004  Score=54.65  Aligned_cols=89  Identities=18%  Similarity=0.163  Sum_probs=66.0

Q ss_pred             HHHHHhCCchhHhhHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCc
Q 020453          173 DCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPS  252 (326)
Q Consensus       173 ~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~  252 (326)
                      ......++...++..+.       ++.....       ....++|.+...+|++++|+..|.+++++       ++.   
T Consensus        13 ~~~~~~~d~~~Al~~~~-------~i~~~~~-------~~~~nlG~~~~~~g~~~~A~~~~~kAl~l-------dp~---   68 (192)
T d1hh8a_          13 VLAADKKDWKGALDAFS-------AVQDPHS-------RICFNIGCMYTILKNMTEAEKAFTRSINR-------DKH---   68 (192)
T ss_dssp             HHHHHTTCHHHHHHHHH-------TSSSCCH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CTT---
T ss_pred             HHHHHCCCHHHHHHHHH-------hcCCCCH-------HHHHHHHHHHHHcCCchhHHHHHHHHHHH-------hhh---
Confidence            33345566666654442       3433332       24568999999999999999999999875       222   


Q ss_pred             hhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 020453          253 QVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLE  289 (326)
Q Consensus       253 ~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~  289 (326)
                          .+..+.++|.++..+|++++|+..|++++..++
T Consensus        69 ----~~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~  101 (192)
T d1hh8a_          69 ----LAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLR  101 (192)
T ss_dssp             ----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTT
T ss_pred             ----hhhhHHHHHHHHHhhccHHHHHHHHHHHHHhCc
Confidence                356788999999999999999999999987543

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=96.99  E-value=0.02  Score=47.30  Aligned_cols=145  Identities=15%  Similarity=0.097  Sum_probs=101.8

Q ss_pred             HHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhCCchhHhhHHHHHHHHHHhCCCChhHH
Q 020453          126 RAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEI  205 (326)
Q Consensus       126 ~~~~~~~~~~a~~~~~~c~~~l~~~l~~~~~~~~~C~~H~~~l~~~C~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~  205 (326)
                      ..+..|++++|...+..+       +...+....  ......+..++.+....|+...+...++.+.........     
T Consensus        21 ~~~~~g~~~~A~~~~~~a-------L~~~~~~~~--~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~-----   86 (366)
T d1hz4a_          21 VAINDGNPDEAERLAKLA-------LEELPPGWF--YSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDV-----   86 (366)
T ss_dssp             HHHHTTCHHHHHHHHHHH-------HHTCCTTCH--HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC-----
T ss_pred             HHHHCCCHHHHHHHHHHH-------HhhCcCCCc--HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc-----
Confidence            467789999987766533       322222211  112234455667777889999999999888877666543     


Q ss_pred             HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 020453          206 IHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAI  285 (326)
Q Consensus       206 ~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~  285 (326)
                      ..........++.+....+++..+...+.+++++..........      ..+.....++.++...|+++.+...+.++.
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~------~~~~~~~~la~~~~~~~~~~~a~~~~~~~~  160 (366)
T d1hz4a_          87 WHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLP------MHEFLVRIRAQLLWAWARLDEAEASARSGI  160 (366)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTST------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhh------HHHHHHHHHHHHHHHhcchhhhHHHHHHHH
Confidence            22334455678888999999999999999999887654333222      345567778999999999999999998887


Q ss_pred             HHHHH
Q 020453          286 KRLES  290 (326)
Q Consensus       286 ~~~~~  290 (326)
                      .....
T Consensus       161 ~~~~~  165 (366)
T d1hz4a_         161 EVLSS  165 (366)
T ss_dssp             HHTTT
T ss_pred             HHhhh
Confidence            77654

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.90  E-value=0.0018  Score=55.00  Aligned_cols=78  Identities=26%  Similarity=0.376  Sum_probs=55.8

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 020453          212 SLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL  291 (326)
Q Consensus       212 ~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l  291 (326)
                      ....++.+....|++++|+..|++++++       .+.       .+..+.++|.++..+|++++|++.|+++++     
T Consensus       307 ~~~~l~~~~~~~~~~~~A~~~~~~al~~-------~p~-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~-----  367 (388)
T d1w3ba_         307 SLNNLANIKREQGNIEEAVRLYRKALEV-------FPE-------FAAAHSNLASVLQQQGKLQEALMHYKEAIR-----  367 (388)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHHHHHHTTS-------CTT-------CHHHHHHHHHHHHTTTCCHHHHHHHHHHHT-----
T ss_pred             hhhHHHHHHHHCCCHHHHHHHHHHHHHh-------CCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----
Confidence            3455677777788888888888877543       232       245677899999999999999999988764     


Q ss_pred             hcCCCchhHHhhccchhhhH
Q 020453          292 TLKPEEAGLEQRCWNSSTTN  311 (326)
Q Consensus       292 ~~~p~~~~~~~~~~~~~~~~  311 (326)
                       .+|+++....++  +.++.
T Consensus       368 -l~P~~~~a~~~l--g~~~~  384 (388)
T d1w3ba_         368 -ISPTFADAYSNM--GNTLK  384 (388)
T ss_dssp             -TCTTCHHHHHHH--HHHHH
T ss_pred             -hCCCCHHHHHHH--HHHHH
Confidence             467776666555  44443

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=96.88  E-value=0.0045  Score=51.56  Aligned_cols=113  Identities=13%  Similarity=0.060  Sum_probs=81.9

Q ss_pred             HHHHHHHHHHHHHhCCchhHhhHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHh
Q 020453          165 GAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAV  244 (326)
Q Consensus       165 ~~~l~~~C~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~  244 (326)
                      .+...+...+....|+...++.+.+.+....    +......  ...+...++.+....|++++|+..|++++++.....
T Consensus        12 ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~----~~~~~~~--~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~   85 (366)
T d1hz4a_          12 AEFNALRAQVAINDGNPDEAERLAKLALEEL----PPGWFYS--RIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHD   85 (366)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC----CTTCHHH--HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC----cCCCcHH--HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhc
Confidence            3333334455567788888888877665432    2222221  234567899999999999999999999988765421


Q ss_pred             hcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 020453          245 KRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL  291 (326)
Q Consensus       245 ~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l  291 (326)
                      .        ....+..+.+++.++...|++..+...+.+++.+....
T Consensus        86 ~--------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~  124 (366)
T d1hz4a_          86 V--------WHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQ  124 (366)
T ss_dssp             C--------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             c--------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhc
Confidence            1        22456677889999999999999999999999988775

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.75  E-value=0.015  Score=48.23  Aligned_cols=162  Identities=14%  Similarity=0.093  Sum_probs=102.8

Q ss_pred             HHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhCCchhHhhHHHHHHHHHHhCCCChhHH
Q 020453          126 RAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEI  205 (326)
Q Consensus       126 ~~~~~~~~~~a~~~~~~c~~~l~~~l~~~~~~~~~C~~H~~~l~~~C~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~  205 (326)
                      ..+..|++++|...+...       +...       |.+...+..++.+....++...++..+..+.+.    .+...  
T Consensus        28 ~~~~~g~~~~A~~~~~~a-------l~~~-------P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~----~p~~~--   87 (323)
T d1fcha_          28 RRLQEGDLPNAVLLFEAA-------VQQD-------PKHMEAWQYLGTTQAENEQELLAISALRRCLEL----KPDNQ--   87 (323)
T ss_dssp             HHHHTTCHHHHHHHHHHH-------HHSC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCH--
T ss_pred             HHHHcCCHHHHHHHHHHH-------HHhC-------CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcc----ccccc--
Confidence            567889999998888643       2222       333455666777777778888887777665543    23222  


Q ss_pred             HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH------------------------------------------HH
Q 020453          206 IHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRR------------------------------------------DA  243 (326)
Q Consensus       206 ~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~------------------------------------------~~  243 (326)
                           .....++.+....+++++|+..|.+++....                                          +.
T Consensus        88 -----~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a  162 (323)
T d1fcha_          88 -----TALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAA  162 (323)
T ss_dssp             -----HHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHH
T ss_pred             -----cccccccccccccccccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHH
Confidence                 2344566677777888888877777665221                                          01


Q ss_pred             hhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHhhccchhhhHHHHhHHhcCccc
Q 020453          244 VKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKF  323 (326)
Q Consensus       244 ~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (326)
                      ....+...     .+..+..+|.++..+|++++|+..|++++.      .+|.++.+..++  +..+..+|++.+++..|
T Consensus       163 l~~~p~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~------~~p~~~~~~~~l--g~~~~~~g~~~~A~~~~  229 (323)
T d1fcha_         163 VRLDPTSI-----DPDVQCGLGVLFNLSGEYDKAVDCFTAALS------VRPNDYLLWNKL--GATLANGNQSEEAVAAY  229 (323)
T ss_dssp             HHHSTTSC-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------HCTTCHHHHHHH--HHHHHHTTCHHHHHHHH
T ss_pred             HHHhhccc-----ccccchhhHHHHHHHHHHhhhhcccccccc------cccccccchhhh--hhcccccccchhHHHHH
Confidence            11111110     123455678889999999999988887754      356666666667  77777777777777766


Q ss_pred             cc
Q 020453          324 RS  325 (326)
Q Consensus       324 ~~  325 (326)
                      ++
T Consensus       230 ~~  231 (323)
T d1fcha_         230 RR  231 (323)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.66  E-value=0.00043  Score=47.74  Aligned_cols=63  Identities=10%  Similarity=-0.025  Sum_probs=52.5

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHHHHh-hcCCCchhHHhhccchhhhHHHHhHHhcCcccccC
Q 020453          262 AKVADVDRSIGNEDVAVDGFQEAIKRLESL-TLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRSA  326 (326)
Q Consensus       262 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (326)
                      -++|.++...|++.+|+.+|++|+.+...- ...+..+.++.++  +..+..+|++.+++.+|++|
T Consensus         9 ~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~L--g~~~~~~g~~~~A~~~y~~a   72 (95)
T d1tjca_           9 FELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYL--SYAVYQQGDLDKALLLTKKL   72 (95)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHH--HHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHH--hhHHHhcCChHHHHHHHHHH
Confidence            468999999999999999999999988764 3345557788888  88899999999998888764

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.48  E-value=0.015  Score=43.32  Aligned_cols=97  Identities=10%  Similarity=0.121  Sum_probs=74.1

Q ss_pred             HHHHHHHHHHHHhCCchhHhhHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhh
Q 020453          166 AVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVK  245 (326)
Q Consensus       166 ~~l~~~C~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~  245 (326)
                      +.|.--+..+...++...++..+..+...    .+..       .....+++.+...+|++++|+..|++++++.     
T Consensus        11 ~~l~~~gn~~~~~~~y~~A~~~~~~al~~----~p~~-------~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-----   74 (159)
T d1a17a_          11 EELKTQANDYFKAKDYENAIKFYSQAIEL----NPSN-------AIYYGNRSLAYLRTECYGYALGDATRAIELD-----   74 (159)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH----STTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHhhhcccc----chhh-------hhhhhhhHHHHHhccccchHHHHHHHHHHHc-----
Confidence            33444556666788899988888776654    2322       3456789999999999999999999998772     


Q ss_pred             cCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 020453          246 RHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR  287 (326)
Q Consensus       246 ~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~  287 (326)
                        +.       .+..+.++|.++..+|++++|+..|++++.+
T Consensus        75 --p~-------~~~a~~~~g~~~~~~g~~~eA~~~~~~a~~~  107 (159)
T d1a17a_          75 --KK-------YIKGYYRRAASNMALGKFRAALRDYETVVKV  107 (159)
T ss_dssp             --TT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             --cc-------chHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence              22       2456788999999999999999988888664

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.31  E-value=0.01  Score=49.91  Aligned_cols=121  Identities=21%  Similarity=0.231  Sum_probs=78.3

Q ss_pred             HHHHHHhCCchhHhhHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 020453          172 GDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVP  251 (326)
Q Consensus       172 C~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~  251 (326)
                      +.+....++...++..++.+.+    +.+...       .....++.+....+++++|+..|++++..       .+.  
T Consensus       244 ~~~~~~~~~~~~A~~~~~~al~----~~p~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-------~~~--  303 (388)
T d1w3ba_         244 ACVYYEQGLIDLAIDTYRRAIE----LQPHFP-------DAYCNLANALKEKGSVAEAEDCYNTALRL-------CPT--  303 (388)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHH----TCSSCH-------HHHHHHHHHHHHHSCHHHHHHHHHHHHHH-------CTT--
T ss_pred             HHHHHHCCCHHHHHHHHHHHHH----hCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHhhhcc-------CCc--
Confidence            3444445555555555444332    233222       34456788888888999998888776543       222  


Q ss_pred             chhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHhhccchhhhHHHHhHHhcCccccc
Q 020453          252 SQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRS  325 (326)
Q Consensus       252 ~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (326)
                           ....+..++.++..+|++++|++.|++++      ..+|+++.+..++  +.++..+|++.++...|++
T Consensus       304 -----~~~~~~~l~~~~~~~~~~~~A~~~~~~al------~~~p~~~~~~~~l--a~~~~~~g~~~~A~~~~~~  364 (388)
T d1w3ba_         304 -----HADSLNNLANIKREQGNIEEAVRLYRKAL------EVFPEFAAAHSNL--ASVLQQQGKLQEALMHYKE  364 (388)
T ss_dssp             -----CHHHHHHHHHHHHTTTCHHHHHHHHHHHT------TSCTTCHHHHHHH--HHHHHTTTCCHHHHHHHHH
T ss_pred             -----cchhhhHHHHHHHHCCCHHHHHHHHHHHH------HhCCCCHHHHHHH--HHHHHHcCCHHHHHHHHHH
Confidence                 13456678889999999999998888765      3467777666666  7777777777776666654

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.27  E-value=0.014  Score=41.14  Aligned_cols=102  Identities=14%  Similarity=0.229  Sum_probs=74.6

Q ss_pred             HHHHHHhCCchhHhhHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 020453          172 GDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVP  251 (326)
Q Consensus       172 C~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~  251 (326)
                      +......++..+++..+..+...    .+..       .....+++.+...++++++|+..|.+++++.       +.+ 
T Consensus        10 g~~~~~~g~~~eAi~~~~~al~~----~p~~-------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-------p~~-   70 (117)
T d1elwa_          10 GNKALSVGNIDDALQCYSEAIKL----DPHN-------HVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-------PDW-   70 (117)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHH----CTTC-------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-------TTC-
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhc----CCcc-------hhhhhcccccccccccccccchhhhhHHHhc-------cch-
Confidence            34445678888888887776643    3323       2356788889999999999999999997663       222 


Q ss_pred             chhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHhhc
Q 020453          252 SQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRC  304 (326)
Q Consensus       252 ~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~p~~~~~~~~~  304 (326)
                            ...+-++|.++..+|++++|+..|++++.      ..|++..+...+
T Consensus        71 ------~~~~~~~g~~~~~~~~~~~A~~~~~~a~~------~~p~~~~~~~~l  111 (117)
T d1elwa_          71 ------GKGYSRKAAALEFLNRFEEAKRTYEEGLK------HEANNPQLKEGL  111 (117)
T ss_dssp             ------HHHHHHHHHHHHHTTCHHHHHHHHHHHHT------TCTTCHHHHHHH
T ss_pred             ------hhHHHHHHHHHHHccCHHHHHHHHHHHHH------hCCCCHHHHHHH
Confidence                  34678899999999999999999887774      456666555544

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=96.14  E-value=0.035  Score=44.28  Aligned_cols=98  Identities=15%  Similarity=0.095  Sum_probs=75.5

Q ss_pred             HHHHHHHHHHHHHhCCchhHhhHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHh
Q 020453          165 GAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAV  244 (326)
Q Consensus       165 ~~~l~~~C~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~  244 (326)
                      .+.+...+.+....|+...++..++.+...    .+...       .+...+|.+...+|++++|+..|++++++.    
T Consensus        37 a~~~~~~G~~y~~~g~~~~A~~~~~~al~l----~p~~~-------~a~~~lg~~~~~~g~~~~A~~~~~~al~~~----  101 (259)
T d1xnfa_          37 AQLLYERGVLYDSLGLRALARNDFSQALAI----RPDMP-------EVFNYLGIYLTQAGNFDAAYEAFDSVLELD----  101 (259)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CCCCH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHhhcc----CCCCH-------HHHhhhchHHHHHHHHHHhhhhhhHHHHHH----
Confidence            445556678887889988888888777654    33332       356789999999999999999999998762    


Q ss_pred             hcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 020453          245 KRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR  287 (326)
Q Consensus       245 ~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~  287 (326)
                         +.+       ...+.++|.++..+|++++|++.+++++.+
T Consensus       102 ---p~~-------~~a~~~lg~~~~~~g~~~~A~~~~~~al~~  134 (259)
T d1xnfa_         102 ---PTY-------NYAHLNRGIALYYGGRDKLAQDDLLAFYQD  134 (259)
T ss_dssp             ---TTC-------THHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             ---hhh-------hhhHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence               222       245778899999999999999999988764

>d2csva1 g.43.1.1 (A:8-66) Tripartite motif-containing protein 29 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Tripartite motif-containing protein 29
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.09  E-value=3.9e-05  Score=48.16  Aligned_cols=37  Identities=14%  Similarity=0.149  Sum_probs=30.9

Q ss_pred             HHHHHHHHHHHHHH---------HHHHHhCCchhHhhHHHHHHHHH
Q 020453          159 ELCSQLGAVLGMLG---------DCCRAMGDADAAVAYFADSVEFL  195 (326)
Q Consensus       159 ~~C~~H~~~l~~~C---------~~~~~~h~~H~~~~~~e~~~~~~  195 (326)
                      ..|+.|++.+.+||         .|....|++|+++++.+++.+.+
T Consensus        12 ~~C~~H~e~l~lyC~~c~~~iC~~C~~~~H~~H~~~~l~~a~~~~k   57 (59)
T d2csva1          12 RKCPVHGKTMELFCQTDQTCICYLCMFQEHKNHSTVTVEEAKAEKE   57 (59)
T ss_dssp             CBCTTTCCBCCEEESSSCCEECHHHHHTTTSSSCEEEHHHHHHHHS
T ss_pred             CchhhhCCccceECCCCCceECcccCcccCCCCCeeCHHHHHHHHh
Confidence            68999999999999         55455799999999999877654

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=95.71  E-value=0.025  Score=39.48  Aligned_cols=89  Identities=10%  Similarity=-0.000  Sum_probs=67.0

Q ss_pred             HHHHHHhCCchhHhhHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 020453          172 GDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVP  251 (326)
Q Consensus       172 C~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~  251 (326)
                      +......++...++..++.+...    .+..       ......+|.+....+++++|+..|++++++.       +.+ 
T Consensus        23 g~~~~~~g~~~~A~~~~~~al~~----~p~~-------~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-------p~~-   83 (112)
T d1hxia_          23 GLSMLKLANLAEAALAFEAVCQK----EPER-------EEAWRSLGLTQAENEKDGLAIIALNHARMLD-------PKD-   83 (112)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHH----STTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTC-
T ss_pred             HHHHHHHhhhHHHHHHHhhhccc----cccc-------chhhhhhhhhhhhhhhHHHhhcccccccccc-------ccc-
Confidence            34445678888888777666543    2322       3456789999999999999999999987762       332 


Q ss_pred             chhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 020453          252 SQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAI  285 (326)
Q Consensus       252 ~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~  285 (326)
                            ...+..+|.++..+|++++|++.+++.+
T Consensus        84 ------~~a~~~la~~y~~~g~~~~A~~~l~~~l  111 (112)
T d1hxia_          84 ------IAVHAALAVSHTNEHNANAALASLRAWL  111 (112)
T ss_dssp             ------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ------ccchHHHHHHHHHCCCHHHHHHHHHHHh
Confidence                  4567789999999999999999988764

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.63  E-value=0.016  Score=48.71  Aligned_cols=66  Identities=12%  Similarity=0.099  Sum_probs=31.9

Q ss_pred             HHHHHHHHHHHHHHHHhCCchhHhhHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHH
Q 020453          162 SQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGG-DLQAARSYYVRSLN  238 (326)
Q Consensus       162 ~~H~~~l~~~C~~~~~~h~~H~~~~~~e~~~~~~~~L~~~~~~~~~~i~~~~~~l~~l~~~~~-~~~~a~~~~~~sl~  238 (326)
                      |...+...+++.+........++..+.+.+.+.    .+...       .+....+.+...++ ++++|+..|.++++
T Consensus        40 p~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~l----nP~~~-------~a~~~r~~~l~~l~~~~~eal~~~~~al~  106 (315)
T d2h6fa1          40 DKFRDVYDYFRAVLQRDERSERAFKLTRDAIEL----NAANY-------TVWHFRRVLLKSLQKDLHEEMNYITAIIE  106 (315)
T ss_dssp             HHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHH----CTTCH-------HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHH----CCCCh-------HHHHHHHHHHHHhCcCHHHHHHHHHHHHH
Confidence            444455555555555555666666655554432    22221       12334444444443 35555555555544

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.27  E-value=0.017  Score=42.62  Aligned_cols=76  Identities=12%  Similarity=0.036  Sum_probs=43.8

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCH---HHHHHHHHHHHHHHHHh-hcCCCchhHHhhcc
Q 020453          230 RSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNE---DVAVDGFQEAIKRLESL-TLKPEEAGLEQRCW  305 (326)
Q Consensus       230 ~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~l-~~~p~~~~~~~~~~  305 (326)
                      +..|+++++..+...+.++.+....+       ++|.++..++++   .++...+++++..+++. ..+|.++....++ 
T Consensus        10 ~~~fe~A~~~~e~al~~~P~~~~~~~-------~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~l-   81 (145)
T d1zu2a1          10 ILLFEQIRQDAENTYKSNPLDADNLT-------RWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCI-   81 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTCHHHHH-------HHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH-
T ss_pred             HccHHHHHHHHHHHHhhCCcchHHHH-------HHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhH-
Confidence            33455666666666677787654444       444444333332   23344555566666555 5688888777777 


Q ss_pred             chhhhHHHH
Q 020453          306 NSSTTNFQK  314 (326)
Q Consensus       306 ~~~~~~~~~  314 (326)
                       +.++..++
T Consensus        82 -G~~y~~~g   89 (145)
T d1zu2a1          82 -GNAYTSFA   89 (145)
T ss_dssp             -HHHHHHHH
T ss_pred             -HHHHHHcc
Confidence             66665554

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.76  E-value=0.015  Score=52.21  Aligned_cols=76  Identities=17%  Similarity=0.201  Sum_probs=51.7

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 020453          209 LSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRL  288 (326)
Q Consensus       209 i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~  288 (326)
                      .......+|.+....+++++|+.+|.+++++       .+.       .+...++||.++...|++.+|+.+|.+++.  
T Consensus       151 ~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l-------~P~-------~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~--  214 (497)
T d1ya0a1         151 CQHCLVHLGDIARYRNQTSQAESYYRHAAQL-------VPS-------NGQPYNQLAILASSKGDHLTTIFYYCRSIA--  214 (497)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CTT-------BSHHHHHHHHHHHHTTCHHHHHHHHHHHHS--
T ss_pred             HHHHHHHHHHHHHHcccHHHHHHHHHHHHHH-------CCC-------chHHHHHHHHHHHHcCCHHHHHHHHHHHHh--
Confidence            3456667788888888888888888887665       222       245678888888888888888888877753  


Q ss_pred             HHhhcCCCchhHHhhc
Q 020453          289 ESLTLKPEEAGLEQRC  304 (326)
Q Consensus       289 ~~l~~~p~~~~~~~~~  304 (326)
                          ..|+-.....|+
T Consensus       215 ----~~~~~~~a~~nL  226 (497)
T d1ya0a1         215 ----VKFPFPAASTNL  226 (497)
T ss_dssp             ----SSBCCHHHHHHH
T ss_pred             ----CCCCCHHHHHHH
Confidence                234444445555

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.19  E-value=0.16  Score=35.90  Aligned_cols=39  Identities=8%  Similarity=0.037  Sum_probs=31.1

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHH
Q 020453          257 VAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLE  301 (326)
Q Consensus       257 la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~p~~~~~~  301 (326)
                      .+..+.++|.++..+|++++|+++|++++++      +|++...+
T Consensus        71 ~~~~~~~Lg~~y~~~g~~~~A~~~~~~aL~~------~P~~~~A~  109 (122)
T d1nzna_          71 QRDYVFYLAVGNYRLKEYEKALKYVRGLLQT------EPQNNQAK  109 (122)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh------CcCCHHHH
Confidence            3567889999999999999999999988764      56664433

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.10  E-value=0.042  Score=39.14  Aligned_cols=85  Identities=15%  Similarity=-0.025  Sum_probs=51.1

Q ss_pred             hcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh-hcCCCc--h
Q 020453          222 YGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL-TLKPEE--A  298 (326)
Q Consensus       222 ~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l-~~~p~~--~  298 (326)
                      ..+++++|...|+++++       ..+.+.       .++.++|.++...++..    -+++++.+++++ ..+|..  +
T Consensus        11 ~~~~l~~Ae~~Y~~aL~-------~~p~~~-------~~~~n~a~~L~~s~~~~----d~~~Ai~~l~~~l~~~~~~~~~   72 (122)
T d1nzna_          11 SVEDLLKFEKKFQSEKA-------AGSVSK-------STQFEYAWCLVRTRYND----DIRKGIVLLEELLPKGSKEEQR   72 (122)
T ss_dssp             HHHHHHHHHHHHHHHHH-------HSCCCH-------HHHHHHHHHHTTSSSHH----HHHHHHHHHHHHTTTSCHHHHH
T ss_pred             CHHHHHHHHHHHHHHHh-------hCCCCH-------HHHHHHHHHHHHhcchH----HHHHHHHHHHHHHhccCCchHH
Confidence            34456666666666544       355543       34555666655444422    245566666665 434433  3


Q ss_pred             hHHhhccchhhhHHHHhHHhcCcccccC
Q 020453          299 GLEQRCWNSSTTNFQKNHLNQLPKFRSA  326 (326)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (326)
                      ..+.++  +..+.-+|++..+..+|++|
T Consensus        73 ~~~~~L--g~~y~~~g~~~~A~~~~~~a   98 (122)
T d1nzna_          73 DYVFYL--AVGNYRLKEYEKALKYVRGL   98 (122)
T ss_dssp             HHHHHH--HHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHH--HHHHHHHhhhHHHHHHHHHH
Confidence            466777  88888899999988888753

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.74  E-value=0.08  Score=44.17  Aligned_cols=111  Identities=6%  Similarity=-0.082  Sum_probs=63.1

Q ss_pred             HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH----------HHHhhcCCCCCc---hhh--------hHHHHHHHH
Q 020453          206 IHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVR----------RDAVKRHSNVPS---QVL--------DVAVSLAKV  264 (326)
Q Consensus       206 ~~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~----------~~~~~~~~~~~~---~~~--------~la~~l~~l  264 (326)
                      ...-.++.+.++.+....+.+++|+..|.+++++.          ..+......+..   ..+        .-...+.++
T Consensus        39 ~p~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~  118 (315)
T d2h6fa1          39 SDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHR  118 (315)
T ss_dssp             CHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence            34456677788888888888899999888887742          111111111100   000        112334456


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHhhccchhhhHHHHhHHhcCcccc
Q 020453          265 ADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFR  324 (326)
Q Consensus       265 ~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (326)
                      |.++..+|++++|++.++++++      .+|.+.....++  +.++..++++..++..|+
T Consensus       119 ~~~~~~l~~~~eAl~~~~kal~------~dp~n~~a~~~~--~~~~~~~~~~~~Al~~~~  170 (315)
T d2h6fa1         119 RVLVEWLRDPSQELEFIADILN------QDAKNYHAWQHR--QWVIQEFKLWDNELQYVD  170 (315)
T ss_dssp             HHHHHHHTCCTTHHHHHHHHHH------HCTTCHHHHHHH--HHHHHHHTCCTTHHHHHH
T ss_pred             hHHHHhhccHHHHHHHHhhhhh------hhhcchHHHHHH--HHHHHHHHhhHHHHHHHH
Confidence            6667777777776666665553      356665555555  555566665555555544

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=92.52  E-value=1.2  Score=31.81  Aligned_cols=94  Identities=13%  Similarity=0.075  Sum_probs=53.6

Q ss_pred             hCCCChhHHHHHHHHHHHHHHHHH---HhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhc--
Q 020453          197 KLPMDDLEIIHTLSVSLNKIGDLK---YYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSI--  271 (326)
Q Consensus       197 ~L~~~~~~~~~~i~~~~~~l~~l~---~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~--  271 (326)
                      ++.+...++...+......++...   ...+.+++|+..|++++       +-++.+.       ..+.++|.++..+  
T Consensus        25 ~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl-------~l~P~~~-------~a~~~lG~~y~~~g~   90 (145)
T d1zu2a1          25 KSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEAL-------LIDPKKD-------EAVWCIGNAYTSFAF   90 (145)
T ss_dssp             HHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHH-------HHCTTCH-------HHHHHHHHHHHHHHH
T ss_pred             hhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHH-------Hhcchhh-------HHHhhHHHHHHHccc
Confidence            455655554443333333332221   12234455555555554       4456554       3455556555444  


Q ss_pred             --CCHHHHHHHHHHHHHHHHHh-hcCCCchhHHhhc
Q 020453          272 --GNEDVAVDGFQEAIKRLESL-TLKPEEAGLEQRC  304 (326)
Q Consensus       272 --~~~~~a~~~~~~~~~~~~~l-~~~p~~~~~~~~~  304 (326)
                        ++...+...|.++...+++. ..+|.+......+
T Consensus        91 ~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L  126 (145)
T d1zu2a1          91 LTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSL  126 (145)
T ss_dssp             HCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             chhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHH
Confidence              45677778888888888887 7788887766665

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=92.38  E-value=0.027  Score=43.18  Aligned_cols=106  Identities=14%  Similarity=0.115  Sum_probs=66.3

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhh--------hHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 020453          211 VSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVL--------DVAVSLAKVADVDRSIGNEDVAVDGFQ  282 (326)
Q Consensus       211 ~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~--------~la~~l~~l~~~~~~~~~~~~a~~~~~  282 (326)
                      +...+.+......|++++|...|.+++++.+.-.-.......+..        ..+..+.+++.++..+|++++|+..++
T Consensus        12 ~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~~~   91 (179)
T d2ff4a2          12 VAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELE   91 (179)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHH
Confidence            345566777788999999999999999865421111111111111        133456778899999999988888877


Q ss_pred             HHHHHHHHhhcCCCchhHHhhccchhhhHHHHhHHhcCcccc
Q 020453          283 EAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFR  324 (326)
Q Consensus       283 ~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (326)
                      +++.      .+|.+..+-..+  +..+.-+|++.+++..|+
T Consensus        92 ~al~------~~P~~e~~~~~l--~~al~~~Gr~~eAl~~y~  125 (179)
T d2ff4a2          92 ALTF------EHPYREPLWTQL--ITAYYLSDRQSDALGAYR  125 (179)
T ss_dssp             HHHH------HSTTCHHHHHHH--HHHHHTTTCHHHHHHHHH
T ss_pred             HHHH------hCCccHHHHHHH--HHHHHHhcCHHHHHHHHH
Confidence            6655      356555555555  555555555555555544

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=92.34  E-value=1.2  Score=33.24  Aligned_cols=76  Identities=9%  Similarity=0.035  Sum_probs=58.8

Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 020453          207 HTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIK  286 (326)
Q Consensus       207 ~~i~~~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~  286 (326)
                      ........++++.....|++++|+..+++.+++       ++.+       ......++.++..+|++.+|+..|++...
T Consensus        64 ~~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~-------~P~~-------e~~~~~l~~al~~~Gr~~eAl~~y~~~~~  129 (179)
T d2ff4a2          64 EDKVLAHTAKAEAEIACGRASAVIAELEALTFE-------HPYR-------EPLWTQLITAYYLSDRQSDALGAYRRVKT  129 (179)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------STTC-------HHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHh-------CCcc-------HHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            334456677888899999999999999988664       3332       24567789999999999999999999999


Q ss_pred             HHHH-hhcCCC
Q 020453          287 RLES-LTLKPE  296 (326)
Q Consensus       287 ~~~~-l~~~p~  296 (326)
                      .+.+ +...|+
T Consensus       130 ~L~~eLG~~P~  140 (179)
T d2ff4a2         130 TLADDLGIDPG  140 (179)
T ss_dssp             HHHHHHSCCCC
T ss_pred             HHHHHhCCCcC
Confidence            8855 455554

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.56  E-value=0.31  Score=43.25  Aligned_cols=58  Identities=14%  Similarity=0.063  Sum_probs=23.9

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 020453          212 SLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAI  285 (326)
Q Consensus       212 ~~~~l~~l~~~~~~~~~a~~~~~~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~  285 (326)
                      ...++|......+++++|+..|.+++...-                ...+.++|.++..+|++++|+.+|++|+
T Consensus       122 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~~----------------~~~~~~LG~l~~~~~~~~~A~~~y~~A~  179 (497)
T d1ya0a1         122 KSSQLGIISNKQTHTSAIVKPQSSSCSYIC----------------QHCLVHLGDIARYRNQTSQAESYYRHAA  179 (497)
T ss_dssp             ---------------------CCHHHHHHH----------------HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHhHHHHHhCCCHHHHHHHHHHHhCCCH----------------HHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence            445666666777777777777776654321                2345567777777777777777777653

>d2dida1 g.43.1.1 (A:8-47) Tripartite motif-containing protein 39 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Tripartite motif-containing protein 39
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.18  E-value=0.0018  Score=36.59  Aligned_cols=28  Identities=25%  Similarity=0.388  Sum_probs=21.0

Q ss_pred             HHHHHHHHHHHHH---------HHHH-HhCCchhHhhH
Q 020453          160 LCSQLGAVLGMLG---------DCCR-AMGDADAAVAY  187 (326)
Q Consensus       160 ~C~~H~~~l~~~C---------~~~~-~~h~~H~~~~~  187 (326)
                      +|+.|++.+++||         .|.. ..|++|+++|+
T Consensus         3 ~C~~H~e~l~lfC~~d~~~iC~~C~~~~~H~~H~v~pi   40 (40)
T d2dida1           3 LCPQHHEALSLFCYEDQEAVCLICAISHTHRAHTVVPL   40 (40)
T ss_dssp             BCTTTCCBCCEEESSSCSEECHHHHTSSTTTTSCEEEC
T ss_pred             cchhhCccceEEcccCCcEeeccCcCCCCcCCCcEecC
Confidence            6899999999999         3433 35888987653

>d2jnea1 g.41.18.1 (A:1-71) Hypothetical protein YfgJ {Escherichia coli [TaxId: 562]}

class: Small proteins
fold: Rubredoxin-like
superfamily: YfgJ-like
family: YfgJ-like
domain: Hypothetical protein YfgJ
species: Escherichia coli [TaxId: 562]

Probab=87.95  E-value=0.026  Score=35.31  Aligned_cols=39  Identities=28%  Similarity=0.697  Sum_probs=29.4

Q ss_pred             CcccccccccccCCCeecccCCcchHHhHhcCCC---CCCCCccccc
Q 020453           23 PLSCMICQALLFECSKCTPCSHVYCKACISRFKD---CPLCGADIEK   66 (326)
Q Consensus        23 ~l~C~iC~~~l~~~p~~l~C~h~fC~~Cl~~~~~---CP~Cr~~~~~   66 (326)
                      ++.||.|...| + ++.   +|.+|..|-..+..   ||.|..++..
T Consensus         2 ~~~CP~C~~eL-~-~~~---~~~~C~~C~~~~~~~a~CPdC~~~Le~   43 (71)
T d2jnea1           2 ELHCPQCQHVL-D-QDN---GHARCRSCGEFIEMKALCPDCHQPLQV   43 (71)
T ss_dssp             CCBCSSSCSBE-E-EET---TEEEETTTCCEEEEEEECTTTCSBCEE
T ss_pred             CCcCCCccCcc-c-ccC---CCEehhhhhhhheeEEeCCccccHHHH
Confidence            57899999985 4 332   68888888876643   9999988663

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=83.59  E-value=2  Score=30.04  Aligned_cols=47  Identities=11%  Similarity=0.018  Sum_probs=32.1

Q ss_pred             HHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 020453          235 RSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR  287 (326)
Q Consensus       235 ~sl~~~~~~~~~~~~~~~~~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~  287 (326)
                      +++.+.+++....+.      .....+-.||..+-.+|+|++|+.+++.++++
T Consensus        56 ~gI~lLe~~~~~~p~------~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~i  102 (124)
T d2pqrb1          56 LGVKILTDIYKEAES------RRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH  102 (124)
T ss_dssp             HHHHHHHHHHHHCGG------GHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCch------hHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence            444444554443333      23467788899999999999999888766654

>d2djaa1 g.43.1.1 (A:8-78) Midline-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Midline-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.14  E-value=0.00086  Score=43.52  Aligned_cols=44  Identities=11%  Similarity=0.046  Sum_probs=32.9

Q ss_pred             HHHHHH-HHHHHHHH---------HHHHH-hCCchhHhhHHHHHHHHHHhCCCCh
Q 020453          159 ELCSQL-GAVLGMLG---------DCCRA-MGDADAAVAYFADSVEFLMKLPMDD  202 (326)
Q Consensus       159 ~~C~~H-~~~l~~~C---------~~~~~-~h~~H~~~~~~e~~~~~~~~L~~~~  202 (326)
                      .+|+.| ++.+.+||         .|... .|++|.+.++.+++...+.+|....
T Consensus        12 ~~C~~H~~e~l~~fC~~C~~~iC~~C~~~~~Hk~H~~~~i~~a~~~~k~~l~~~l   66 (71)
T d2djaa1          12 ITCLDHENEKVNMYCVSDDQLICALCKLVGRHRDHQVASLNDRFEKLKQTLEMNL   66 (71)
T ss_dssp             CCCSSCSSSCCCEEETTTTEEECHHHHHTSTTTTCCBCCCCSSCCCCCCCCCCCC
T ss_pred             CcCcccCCccceeEcCCCCceeccccccCCCCCCCcCcCHHHHHHHHHHHHHHHH
Confidence            479999 68899999         44333 5888999999888776666665543

>d1wr0a1 a.7.14.1 (A:5-81) Vacuolar sorting protein 4b (VPS4B, SKD1 protein) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain
family: MIT domain
domain: Vacuolar sorting protein 4b (VPS4B, SKD1 protein)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.83  E-value=2.5  Score=26.64  Aligned_cols=43  Identities=23%  Similarity=0.318  Sum_probs=33.0

Q ss_pred             hhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh-hcCCC
Q 020453          254 VLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL-TLKPE  296 (326)
Q Consensus       254 ~~~la~~l~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l-~~~p~  296 (326)
                      .++-|..+.+-|.-....|+++.|+.+|.++++.+... ...++
T Consensus         7 ~l~~A~~l~~~Av~~D~~~~y~~A~~~Y~~a~~~l~~~l~~e~~   50 (77)
T d1wr0a1           7 NLQKAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLHVVKYEAQ   50 (77)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhccCC
Confidence            33456666677777788899999999999999998776 43433

>d1frea_ g.43.1.1 (A:) Nuclear factor XNF7 {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Nuclear factor XNF7
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=81.23  E-value=0.0036  Score=35.12  Aligned_cols=28  Identities=14%  Similarity=0.173  Sum_probs=20.3

Q ss_pred             HHHHHHHHHHHHH---------HHHH-HhCCchhHhhH
Q 020453          160 LCSQLGAVLGMLG---------DCCR-AMGDADAAVAY  187 (326)
Q Consensus       160 ~C~~H~~~l~~~C---------~~~~-~~h~~H~~~~~  187 (326)
                      .|+.|++.+++||         .|.. ..|++|+++|+
T Consensus         2 ~C~~H~e~l~lfC~~d~~~iC~~C~~~~~H~~H~v~pi   39 (39)
T d1frea_           2 KCSEHDERLKLYCKDDGTLSCVICRDSLKHASHNFLPI   39 (39)
T ss_dssp             CCCSSCSSCCCCCCSSSSSSCCTTSSCSSCTTCCCCCC
T ss_pred             CCcccCcceeEEcccCCcEeeccCcCCCCcCCCcEeeC
Confidence            4889999999999         3322 35888987663

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=80.03  E-value=2.4  Score=34.42  Aligned_cols=56  Identities=9%  Similarity=-0.165  Sum_probs=39.0

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHhhccchhhhHHHHhHHhcCccccc
Q 020453          262 AKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRS  325 (326)
Q Consensus       262 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (326)
                      ..++.++...|.+++|++.+++++      ..+|.+.....++  +.++..++++.++...|++
T Consensus       148 ~~~~~~~~~~~~~~~Al~~~~~~i------~~~p~~~~a~~~l--~~~~~~~~~~~~A~~~~~~  203 (334)
T d1dcea1         148 YRRFVAAQAAVAPAEELAFTDSLI------TRNFSNYSSWHYR--SCLLPQLHPQPDSGPQGRL  203 (334)
T ss_dssp             HHHHHHHHTCCCHHHHHHHHHTTT------TTTCCCHHHHHHH--HHHHHHHSCCCCSSSCCSS
T ss_pred             hHHHHHHHhccccHHHHHHHHHHH------HcCCCCHHHHHHH--HHHHHHhcCHHHHHHHHHH
Confidence            345677778888777776655332      5678887777777  7777777777777666654