Citrus Sinensis ID: 020456
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
No hits with e-value below 0.001 by BLAST
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 326 | ||||||
| 224110992 | 2359 | cc-nbs-lrr resistance protein [Populus t | 0.917 | 0.126 | 0.411 | 1e-52 | |
| 255542484 | 2460 | phosphoprotein phosphatase, putative [Ri | 0.779 | 0.103 | 0.376 | 4e-33 | |
| 147826471 | 1271 | hypothetical protein VITISV_031250 [Viti | 0.822 | 0.210 | 0.344 | 1e-31 | |
| 255581680 | 1126 | Disease resistance protein RPS2, putativ | 0.920 | 0.266 | 0.316 | 2e-27 | |
| 147865073 | 1694 | hypothetical protein VITISV_021876 [Viti | 0.831 | 0.159 | 0.329 | 4e-26 | |
| 147802546 | 1409 | hypothetical protein VITISV_007222 [Viti | 0.831 | 0.192 | 0.319 | 7e-26 | |
| 302143659 | 922 | unnamed protein product [Vitis vinifera] | 0.834 | 0.295 | 0.328 | 1e-25 | |
| 359488108 | 1436 | PREDICTED: disease resistance protein At | 0.834 | 0.189 | 0.328 | 2e-25 | |
| 359488288 | 1340 | PREDICTED: LOW QUALITY PROTEIN: probable | 0.723 | 0.176 | 0.346 | 4e-25 | |
| 302143647 | 759 | unnamed protein product [Vitis vinifera] | 0.831 | 0.357 | 0.322 | 3e-24 |
| >gi|224110992|ref|XP_002332999.1| cc-nbs-lrr resistance protein [Populus trichocarpa] gi|222834484|gb|EEE72961.1| cc-nbs-lrr resistance protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 213 bits (542), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 132/321 (41%), Positives = 190/321 (59%), Gaps = 22/321 (6%)
Query: 1 MKPFSQGIVSTPKLHEVQVTEKNEDELRHWEGNLNSTIQKCYEEMIGFCDIEYLQLSDFP 60
M+ FSQGI STPKL V + + +E + W GNLN+T+Q+ Y +M+G I L+LSDFP
Sbjct: 1612 MRIFSQGISSTPKLQGVYWKKDSMNE-KCWHGNLNATLQQLYTKMVGCNGIWSLKLSDFP 1670
Query: 61 CLKEIWHGQALPVSFFNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNCDSIEEVL 120
LK+ WHGQ LP + F+NL L VD+C +S+AIP+N+L+ +NNL+ L V+NC+S+E V
Sbjct: 1671 QLKDRWHGQ-LPFNCFSNLGNLTVDNCAIVSTAIPSNILKFMNNLKYLHVKNCESLEGVF 1729
Query: 121 HLEELNADKEHISPLFPKLSELRLIDLPKLKRFCNFT-ENIIEMLMLWSLTIENCPNMET 179
LE L+A + L P L EL L+DLP+L+ N I++ L L + NC ++
Sbjct: 1730 DLEGLSAQAGY-DRLLPNLQELHLVDLPELRHIWNRDLPGILDFRNLKRLKVHNCSSLRN 1788
Query: 180 FVSNSVVHVTTDNKKPQKLTLEENFLLADQVQPLFDEKV---GEEVKGCIVFERMNYLTL 236
S S+ ++ + + L DE V G E + ++F ++ +L L
Sbjct: 1789 IFSPSMASGLVQLER-----------IGIRNCALMDEIVVNKGTEAETEVMFHKLKHLAL 1837
Query: 237 DCLPSLTSFCLGNYALEFPSLEQVVVRQCPKMKIFSQGVLDTPMLNKVNVTEEEKDDDDE 296
CLP L SF LG A++ PSLE V+V++CP+MK FSQGV+ TP L KV +K+ D
Sbjct: 1838 VCLPRLASFHLGYCAIKLPSLECVLVQECPQMKTFSQGVVSTPKLRKV----VQKEFGDS 1893
Query: 297 GCWEGNLNDTIKQLFNEIVSI 317
W +LN TI +LF E+ I
Sbjct: 1894 VHWAHDLNATIHKLFIEMSDI 1914
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Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255542484|ref|XP_002512305.1| phosphoprotein phosphatase, putative [Ricinus communis] gi|223548266|gb|EEF49757.1| phosphoprotein phosphatase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 148 bits (373), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 101/268 (37%), Positives = 154/268 (57%), Gaps = 14/268 (5%)
Query: 1 MKPFSQGIVSTPKLHEVQVTEKNEDELRHWEGNLNSTIQKCYEEMIGFCDIEYLQLSDFP 60
M+ FS GI++ PKL +V +T K D+ R G+LN+T Q+ Y EM+G +++LQLS+FP
Sbjct: 1522 MEFFSHGIITAPKLEKVSLT-KEGDKWRSV-GDLNTTTQQLYREMVGLNGVQHLQLSEFP 1579
Query: 61 CLKEIWHGQALPVSFFNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNCDSIEEVL 120
L E WH Q LP FF NL+ L VD+C+ SS++P+NLL LN L LEVRNCDS+ +V
Sbjct: 1580 TLVEKWHDQ-LPAYFFYNLKSLVVDNCSFPSSSVPSNLLPFLNELEVLEVRNCDSLAKVF 1638
Query: 121 HLEELNADKEHISPLFPKLSELRLIDLPKLKRFC-NFTENIIEMLMLWSLTIENCPNMET 179
E N D + L P L + LIDLP+L+ + + I L L I NC ++
Sbjct: 1639 DFEWSN-DYGYAGHL-PNLKKFHLIDLPRLRHIWDDISSEISGFKNLTVLNIHNCSSLR- 1695
Query: 180 FVSNSVVHVTTDNKKPQKLTLEENFLLADQVQPLFDEKVG-EEVKGCIVFERMNYLTLDC 238
++ N ++ + + Q++ + L VQ + E + EE I+F + ++L+
Sbjct: 1696 YIFNPIICMGL--VQLQEVEVRNCAL----VQAIIREGLAKEEAPNEIIFPLLKSISLES 1749
Query: 239 LPSLTSFCLGNYALEFPSLEQVVVRQCP 266
LPSL +F G+ + PSL+++ + CP
Sbjct: 1750 LPSLINFFSGSGIVRCPSLKEITIVNCP 1777
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147826471|emb|CAN72797.1| hypothetical protein VITISV_031250 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 142 bits (359), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 102/296 (34%), Positives = 153/296 (51%), Gaps = 28/296 (9%)
Query: 31 EGNLNSTIQKCY--EEMIGFCDIEYLQLSDFPCLKEIWHGQALPVSFFNNLEELEVDDCT 88
EG L++ IQ+ E F ++E L+L+ EIW GQ VSF + L L + C
Sbjct: 982 EGELDNKIQQSLFLVEKEAFPNLEELRLT-LKGXVEIWRGQFSRVSF-SKLRVLNITKCH 1039
Query: 89 NMSSAIPANLLRCLNNLRCLEVRNCDSIEEVLHLEELNADKEHISPLFPKLSELRLIDLP 148
+ I +N+++ L+NL LEV CDS+ EV+ +E L++++ H+ L P+L+E+ L DLP
Sbjct: 1040 GILVVISSNMVQILHNLERLEVTKCDSVNEVIQVERLSSEEFHVDTL-PRLTEIHLEDLP 1098
Query: 149 KLKRFCNFTENIIEMLMLWSLTIENCPNMETFVSNSVVHVTTDNKKPQKLTLEENFLLAD 208
L + + +L I +C ++ V+ S+ K L ++E ++ +
Sbjct: 1099 MLMHLSGLSRYLQS---FETLEIVSCGSLINLVTLSMAKRLVQLKT---LIIKECHMVKE 1152
Query: 209 QVQPLFDEKVGEEVKGCIVFERMNYLTLDCLPSLTSFCLGNYALEFPSLEQVVVRQCPKM 268
V DE +E+ F R+ L LDCLP+L SFC YA FPSLE++ V CPKM
Sbjct: 1153 IVANEGDEPPNDEID----FTRLTRLELDCLPNLKSFCSARYAFRFPSLEEISVAACPKM 1208
Query: 269 KIFSQGVLDTPMLNKVNVTEEEKDDDD-------------EGCWEGNLNDTIKQLF 311
K F +GVLDTP L V + + D E CWE +LN TI ++F
Sbjct: 1209 KFFCKGVLDTPRLKCVQTGDHSEVLDTPRLQCVQMGDLFFERCWESDLNTTIHKMF 1264
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255581680|ref|XP_002531643.1| Disease resistance protein RPS2, putative [Ricinus communis] gi|223528728|gb|EEF30739.1| Disease resistance protein RPS2, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 107/338 (31%), Positives = 161/338 (47%), Gaps = 38/338 (11%)
Query: 4 FSQG--IVSTPKLHEVQV----TEKNEDELRHWEGNLNSTIQKCYEEMIGFCDIEYLQLS 57
FS G +V P L E+++ T L E N I E + F ++E LQ+
Sbjct: 794 FSSGSSVVQCPSLKEIRIVDCPTAFTCTFLGEAEANATHGI---IEPEVVFPNLEELQIL 850
Query: 58 DFPCLKEIWHGQALPVSFFNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNCDSIE 117
+ LK IW Q L F ++ L+++ + P+ +LR L NL L ++ C ++E
Sbjct: 851 NMDNLKMIWSSQ-LQSDSFGKVKVLKMEQSEKLLKIYPSGMLRSLRNLEDLIIKKCSTLE 909
Query: 118 EVLHLEELNADKEHISPLFPKLSELRLIDLPKLKRFCNFTE-NIIEMLMLWSLTIENCPN 176
V L+E+ KE ++ +L +L + DLP LK N ++ L S+ + C +
Sbjct: 910 VVFDLKEVTNIKEKVAS---QLRKLVMEDLPNLKHVWNEDRLGLVSFDKLSSVYVSQCDS 966
Query: 177 METFVSNSVVH---VTTDNKKPQKLTLEENFLLADQVQPLFD----------------EK 217
+ T +S T D K KL E+ + + + L
Sbjct: 967 LITLAPSSACFQSLTTLDLVKCNKL---ESLVASSTAKSLIQLTEMSIKECDGMKEILTN 1023
Query: 218 VGEEVKGCIVFERMNYLTLDCLPSLTSFCLGNYALEFPSLEQVVVRQCPKMKIFSQGVLD 277
G+E I+F R+ L L CLPSL SFC + +FP L QV+VRQCPKM++FS+G +
Sbjct: 1024 EGDEPNEEIIFSRLRSLKLQCLPSLLSFCSSVHCFKFPFLTQVIVRQCPKMQVFSRGSVI 1083
Query: 278 TPMLNKVNVTEEEKDDDDEGCWEGNLNDTIKQLFNEIV 315
TP L V E+K D + W GNLN TI+QLF ++V
Sbjct: 1084 TPKLQSVQQLTEDKTDKER--WSGNLNATIQQLFIDMV 1119
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147865073|emb|CAN83232.1| hypothetical protein VITISV_021876 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 105/319 (32%), Positives = 152/319 (47%), Gaps = 48/319 (15%)
Query: 28 RHWEGNLNSTIQK--CYEEMIGFCDIEYLQLSDFPCLKEIWHGQALPVSFFNNLEELEVD 85
RH EG+ + I + + +GF +E L L D EIW Q P+ F L L V
Sbjct: 1310 RHHEGSFDMPILQPLFLLQQVGFPYLEELILDDNGN-TEIWQEQ-FPMDSFPRLRCLNVR 1367
Query: 86 DCTNMSSAIPANLLRCLNNLRCLEVRNCDSIEEVLHLEELNADKEHISPLFPKLSELRLI 145
++ IP+ +L+ L+NL L+VR C S++E+ LE L D+E+ + +L E+ L
Sbjct: 1368 GYGDILVVIPSFMLQRLHNLEKLDVRRCSSVKEIFQLEGL--DEENQAQRLGRLREIILG 1425
Query: 146 DLPKLKRF------CNFTENIIEMLMLWS-------------------LTIENCPNMETF 180
LP L +E L +WS L + +C ++ +
Sbjct: 1426 SLPALTHLWKENSKSGLDLQSLESLEVWSCNSLISLVPCSVSFQNLDTLDVWSCSSLRSL 1485
Query: 181 VSNSVVHVTTDNKKPQKLTLEENFLLADQVQPLFDEKVGEEVKGCIVFERMNYLTLDCLP 240
+S SV K +KL + + ++ + V G EV I F ++ ++ L CLP
Sbjct: 1486 ISPSVAKSLV---KLRKLKIGGSHMMEEVVA-----NEGGEVVDEIAFYKLQHMVLLCLP 1537
Query: 241 SLTSFCLGNYALEFPSLEQVVVRQCPKMKIFSQGVLDTPMLNKVNVTEEEKDDDDEGCWE 300
+LTSF G Y FPSLE +VV +CPKMKIFS + TP L +V V DDE W
Sbjct: 1538 NLTSFNSGGYIFSFPSLEHMVVEECPKMKIFSPSFVTTPKLERVEVA------DDEWHWH 1591
Query: 301 GNLNDTIKQLF---NEIVS 316
+LN TI LF +EIVS
Sbjct: 1592 NDLNTTIHYLFKKTHEIVS 1610
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147802546|emb|CAN77665.1| hypothetical protein VITISV_007222 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 124 bits (310), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 97/304 (31%), Positives = 152/304 (50%), Gaps = 33/304 (10%)
Query: 29 HWEGNLNSTIQK--CYEEMIGFCDIEYLQLSDFPCLKEIWHGQALPVSFFNNLEELEVDD 86
H GNL+ I + + + F ++E L L D+ EIW Q PV+ F L L V +
Sbjct: 1098 HHMGNLDMLIHQPLFLVQQVAFPNLEELTL-DYNNATEIWQEQ-FPVNSFCRLRVLNVCE 1155
Query: 87 CTNMSSAIPANLLRCLNNLRCLEVRNCDSIEEVLHLEELNADKEHISPLFPKLSELRLID 146
++ IP+ +L+ L+NL L V+ C S++E+ LE D+E+ + + +L E+ L D
Sbjct: 1156 YGDILVVIPSFMLQRLHNLEKLNVKRCSSVKEIFQLE--GHDEENQAKMLGRLREIWLRD 1213
Query: 147 LPKLKRFCNFTENI--------IEMLMLW-----------SLTIENCPNMETFVSNSVVH 187
LP L + EN +E L +W S++ +N +++ + S+
Sbjct: 1214 LPGLIHL--WKENSKPGLDLQSLESLEVWNCDSLINLAPCSVSFQNLDSLDVWSCGSLRS 1271
Query: 188 VTTDNKKPQKLTLEENFLLADQVQPLFDEKVGEEVKGCIVFERMNYLTLDCLPSLTSFCL 247
+ + + L++ + + + E G E IVF ++ ++ L C P+LTSF
Sbjct: 1272 LISPLVAKSLVKLKKLKIGGSHMMEVVVENEGGEGADEIVFCKLQHIVLLCFPNLTSFSS 1331
Query: 248 GNYALEFPSLEQVVVRQCPKMKIFSQGVLDTPMLNKVNVTEEEKDDDDEGCWEGNLNDTI 307
G Y FPSLE +VV +CPKMKIFS G + TP L +V V DDE W+ +LN TI
Sbjct: 1332 GGYIFSFPSLEHMVVEECPKMKIFSSGPITTPRLERVEVA------DDEWHWQDDLNTTI 1385
Query: 308 KQLF 311
LF
Sbjct: 1386 HNLF 1389
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|302143659|emb|CBI22412.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 99/301 (32%), Positives = 151/301 (50%), Gaps = 29/301 (9%)
Query: 28 RHWEGNLNSTIQKCYEEMIGFCDIEYLQLSDFPCLKEIWHGQALPVSFFNNLEELEVDDC 87
RH EGNL+ + + + F ++E L+L D EIW Q PV F L L V D
Sbjct: 627 RHGEGNLDMPL--FFLPHVAFPNLEELRLGDNRD-TEIWPEQ-FPVDSFPRLRVLHVHDY 682
Query: 88 TNMSSAIPANLLRCLNNLRCLEVRNCDSIEEVLHLEELNADKEHISPLFPKLSELRLIDL 147
++ IP+ +L+ L+NL L+V +C S++EV LE L D+E+ + +L E+ L DL
Sbjct: 683 RDILVVIPSFMLQRLHNLEVLKVGSCSSVKEVFQLEGL--DEENQAKRLGRLREIELHDL 740
Query: 148 PKLKRFCN-FTENIIEMLMLWSLTIENCPNMETFVSNSVVH---VTTDNKKPQKLTLEEN 203
P L R +E +++ L SL + NC ++ V +SV T D + L +
Sbjct: 741 PGLTRLWKENSEPGLDLQSLESLEVWNCGSLINLVPSSVSFQNLATLDVQSCGSLRSLIS 800
Query: 204 FLLADQVQPLFDEKVGE-------------EVKGCIVFERMNYLTLDCLPSLTSFCLGNY 250
+A + L K+G E I F ++ ++ L LP+LTSF G Y
Sbjct: 801 PSVAKSLVKLKTLKIGRSDMMEEVVANEGGEATDEITFYKLQHMELLYLPNLTSFSSGGY 860
Query: 251 ALEFPSLEQVVVRQCPKMKIFSQGVLDTPMLNKVNVTEEEKDDDDEGCWEGNLNDTIKQL 310
FPSLEQ++V++CPKMK+FS ++ P L ++ V D+E W+ +LN I
Sbjct: 861 IFSFPSLEQMLVKECPKMKMFSPSLVTPPRLKRIKV------GDEEWPWQDDLNTAIHNS 914
Query: 311 F 311
F
Sbjct: 915 F 915
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359488108|ref|XP_003633701.1| PREDICTED: disease resistance protein At4g27190-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 99/301 (32%), Positives = 151/301 (50%), Gaps = 29/301 (9%)
Query: 28 RHWEGNLNSTIQKCYEEMIGFCDIEYLQLSDFPCLKEIWHGQALPVSFFNNLEELEVDDC 87
RH EGNL+ + + + F ++E L+L D EIW Q PV F L L V D
Sbjct: 1114 RHGEGNLDMPL--FFLPHVAFPNLEELRLGDNRD-TEIWPEQ-FPVDSFPRLRVLHVHDY 1169
Query: 88 TNMSSAIPANLLRCLNNLRCLEVRNCDSIEEVLHLEELNADKEHISPLFPKLSELRLIDL 147
++ IP+ +L+ L+NL L+V +C S++EV LE L D+E+ + +L E+ L DL
Sbjct: 1170 RDILVVIPSFMLQRLHNLEVLKVGSCSSVKEVFQLEGL--DEENQAKRLGRLREIELHDL 1227
Query: 148 PKLKRFCN-FTENIIEMLMLWSLTIENCPNMETFVSNSVVH---VTTDNKKPQKLTLEEN 203
P L R +E +++ L SL + NC ++ V +SV T D + L +
Sbjct: 1228 PGLTRLWKENSEPGLDLQSLESLEVWNCGSLINLVPSSVSFQNLATLDVQSCGSLRSLIS 1287
Query: 204 FLLADQVQPLFDEKVGE-------------EVKGCIVFERMNYLTLDCLPSLTSFCLGNY 250
+A + L K+G E I F ++ ++ L LP+LTSF G Y
Sbjct: 1288 PSVAKSLVKLKTLKIGRSDMMEEVVANEGGEATDEITFYKLQHMELLYLPNLTSFSSGGY 1347
Query: 251 ALEFPSLEQVVVRQCPKMKIFSQGVLDTPMLNKVNVTEEEKDDDDEGCWEGNLNDTIKQL 310
FPSLEQ++V++CPKMK+FS ++ P L ++ V D+E W+ +LN I
Sbjct: 1348 IFSFPSLEQMLVKECPKMKMFSPSLVTPPRLKRIKV------GDEEWPWQDDLNTAIHNS 1401
Query: 311 F 311
F
Sbjct: 1402 F 1402
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359488288|ref|XP_003633735.1| PREDICTED: LOW QUALITY PROTEIN: probable disease resistance protein At1g61310-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 94/271 (34%), Positives = 135/271 (49%), Gaps = 35/271 (12%)
Query: 64 EIWHGQALPVSFFNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNCDSIEEVLHLE 123
EIW Q PV F L L + + ++ IP+++L+ L+ L L VR+C S++EV+ LE
Sbjct: 1015 EIWQEQ-FPVESFCRLRVLSICEYRDILVVIPSSMLQRLHTLEKLTVRSCGSVKEVVQLE 1073
Query: 124 ELNADKEHISPLFPKLSELRLIDLPKLKRFCNFTENI------IEMLMLWSLTIENCPNM 177
L ++ H L +L EL L DLP+LK N+ +E+L +W +C N+
Sbjct: 1074 GLVDEENHFRAL-ARLRELELNDLPELKYLWKENSNVGPHFQNLEILKIW-----DCDNL 1127
Query: 178 ETFVSNSVVHVTTDNKKPQKLTLEENFLLADQVQPLFDEKV----------------GEE 221
V +SV + N L + L K+ GE
Sbjct: 1128 MNLVPSSVSFHNLASLDISYCCSLINLLPPLIAKSLVQHKIFKIGRSDMMKEVVANEGEN 1187
Query: 222 VKGCIVFERMNYLTLDCLPSLTSFCLGNYALEFPSLEQVVVRQCPKMKIFSQGVLDTPML 281
I F ++ + L LP+LTSFC G Y+L FP LE+VVV +CPKMKIFSQG+L TP L
Sbjct: 1188 AGDEITFCKLEEIELCVLPNLTSFCSGVYSLSFPVLERVVVEECPKMKIFSQGLLVTPRL 1247
Query: 282 NKVNVTEEEKDDDDEGCWEGNLNDTIKQLFN 312
++V V ++ W+ +LN TI LFN
Sbjct: 1248 DRVEVGNNKEH------WKDDLNTTIHLLFN 1272
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|302143647|emb|CBI22400.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 100/310 (32%), Positives = 152/310 (49%), Gaps = 39/310 (12%)
Query: 28 RHWEGNLN-STIQKCYE-EMIGFCDIEYLQLSDFPCLKEIWHGQALPVSFFNNLEELEVD 85
RH EG+ + ++Q + + + +E L L+D EIW Q P+ F L L+V
Sbjct: 447 RHHEGSFDMPSLQPLFLLQQVALPYLEELILNDNGN-TEIWQEQ-FPMDSFPRLRYLKVY 504
Query: 86 DCTNMSSAIPANLLRCLNNLRCLEVRNCDSIEEVLHLEELNADKEHISPLFPKLSELRLI 145
++ IP+ +L+ +NL L VR C S++E+ LE L D+E+ + +L E+ L
Sbjct: 505 GYIDILVVIPSFMLQRSHNLEKLNVRRCSSVKEIFQLEGL--DEENQAQRLGRLREIWLR 562
Query: 146 DLPKLKRFCN-FTENIIEMLMLWSLTIENCPNMETFVSNSVVHVTTDN------------ 192
DLP L +++I+++ L SL + NC ++ + V SV D
Sbjct: 563 DLPALTHLWKENSKSILDLQSLESLEVWNCDSLISLVPCSVSFQNLDTLDVWSCSNLRSL 622
Query: 193 ---------KKPQKLTLEENFLLADQVQPLFDEKVGEEVKGCIVFERMNYLTLDCLPSLT 243
K +KL + ++ + V E V E I F ++ ++ L CLP+LT
Sbjct: 623 ISPSVAKSLVKLRKLKIGGLHMMEEVVANEGGEAVDE-----IAFYKLQHMVLLCLPNLT 677
Query: 244 SFCLGNYALEFPSLEQVVVRQCPKMKIFSQGVLDTPMLNKVNVTEEEKDDDDEGCWEGNL 303
SF G Y FPSLE +VV +CPKMKIFS ++ TP L +V V DDE W +L
Sbjct: 678 SFNSGGYIFSFPSLEHMVVEECPKMKIFSPSLVTTPKLERVEVA------DDEWHWHNDL 731
Query: 304 NDTIKQLFNE 313
N TI LF +
Sbjct: 732 NTTIHNLFKK 741
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
No hits with e-value below 0.001 by BLAST
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | fgenesh4_pg.C_scaffold_329000001 | cc-nbs-lrr resistance protein (2359 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 326 | |||
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 99.69 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 99.66 | |
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 99.4 | |
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 99.39 | |
| KOG4341 | 483 | consensus F-box protein containing LRR [General fu | 99.08 | |
| KOG4341 | 483 | consensus F-box protein containing LRR [General fu | 98.91 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 98.73 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 98.61 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 98.57 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 98.54 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 98.52 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 98.49 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 98.46 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 98.45 | |
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 98.43 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 98.33 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 98.32 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 98.31 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 98.25 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 98.23 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 98.18 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 98.15 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 98.1 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 98.07 | |
| KOG1947 | 482 | consensus Leucine rich repeat proteins, some prote | 98.06 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 97.94 | |
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 97.89 | |
| KOG1947 | 482 | consensus Leucine rich repeat proteins, some prote | 97.86 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 97.81 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 97.76 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 97.56 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 97.54 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 97.51 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 97.48 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 97.34 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 96.7 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 96.46 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 96.42 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 96.35 | |
| KOG3864 | 221 | consensus Uncharacterized conserved protein [Funct | 96.21 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 95.93 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 95.67 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 95.32 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 95.13 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 95.06 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 94.82 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 94.73 | |
| KOG3864 | 221 | consensus Uncharacterized conserved protein [Funct | 94.52 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 94.33 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 92.96 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 90.87 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 90.5 | |
| PF13504 | 17 | LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO | 90.3 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 90.04 | |
| smart00367 | 26 | LRR_CC Leucine-rich repeat - CC (cysteine-containi | 89.78 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 88.48 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 88.08 | |
| KOG0532 | 722 | consensus Leucine-rich repeat (LRR) protein, conta | 87.37 | |
| PF00560 | 22 | LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le | 86.88 | |
| KOG1644 | 233 | consensus U2-associated snRNP A' protein [RNA proc | 86.64 | |
| PF13306 | 129 | LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_ | 85.93 | |
| KOG2123 | 388 | consensus Uncharacterized conserved protein [Funct | 83.6 |
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.3e-16 Score=164.40 Aligned_cols=213 Identities=22% Similarity=0.323 Sum_probs=112.8
Q ss_pred cCCCccEEEcccCCCcccccccCCCCCCCCCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccCcCcceeccccc--
Q 020456 47 GFCDIEYLQLSDFPCLKEIWHGQALPVSFFNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNCDSIEEVLHLEE-- 124 (326)
Q Consensus 47 ~~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~-- 124 (326)
.+++|++|++.+|..+..++... ..+++|+.|++++|.++..++.. . ++++|+.|.+++|..++.++....
T Consensus 655 ~l~~Le~L~L~~c~~L~~lp~si----~~L~~L~~L~L~~c~~L~~Lp~~--i-~l~sL~~L~Lsgc~~L~~~p~~~~nL 727 (1153)
T PLN03210 655 MATNLETLKLSDCSSLVELPSSI----QYLNKLEDLDMSRCENLEILPTG--I-NLKSLYRLNLSGCSRLKSFPDISTNI 727 (1153)
T ss_pred cCCcccEEEecCCCCccccchhh----hccCCCCEEeCCCCCCcCccCCc--C-CCCCCCEEeCCCCCCccccccccCCc
Confidence 35667777777666666554433 45666777777777666555432 1 566677777776655543321100
Q ss_pred --cc--c-ccCcCC---------------------------------CCCCCccEEecCCCccccccccccccccccccc
Q 020456 125 --LN--A-DKEHIS---------------------------------PLFPKLSELRLIDLPKLKRFCNFTENIIEMLML 166 (326)
Q Consensus 125 --~~--~-~~~~~~---------------------------------~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~L 166 (326)
+. . ....++ ..+++|+.|.+.+|+.+..+|. .+..+++|
T Consensus 728 ~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~---si~~L~~L 804 (1153)
T PLN03210 728 SWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPS---SIQNLHKL 804 (1153)
T ss_pred CeeecCCCccccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccCh---hhhCCCCC
Confidence 00 0 000000 0123455555555555555444 44555566
Q ss_pred cEEeEecCCCCCccCcchhhhccCCCCCCceEEecccCcccceeccccccccCccccceeeecccceeecccCCCcceec
Q 020456 167 WSLTIENCPNMETFVSNSVVHVTTDNKKPQKLTLEENFLLADQVQPLFDEKVGEEVKGCIVFERMNYLTLDCLPSLTSFC 246 (326)
Q Consensus 167 ~~L~l~~C~~l~~~~~~~~~~~~~~~~~L~~L~i~~~c~~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~ 246 (326)
+.|++++|.+++.++. .+ .+. +|++|++ .+|..+..++.. .++|+.|++.+ ..++.+|
T Consensus 805 ~~L~Ls~C~~L~~LP~-~~--~L~---sL~~L~L-s~c~~L~~~p~~--------------~~nL~~L~Ls~-n~i~~iP 862 (1153)
T PLN03210 805 EHLEIENCINLETLPT-GI--NLE---SLESLDL-SGCSRLRTFPDI--------------STNISDLNLSR-TGIEEVP 862 (1153)
T ss_pred CEEECCCCCCcCeeCC-CC--Ccc---ccCEEEC-CCCCcccccccc--------------ccccCEeECCC-CCCccCh
Confidence 6666666655555422 11 223 5566666 555554433211 12344444443 2333333
Q ss_pred CCCccccCCcccEEEeccCCccccccCCCCCCCCccEEEeccccCCC
Q 020456 247 LGNYALEFPSLEQVVVRQCPKMKIFSQGVLDTPMLNKVNVTEEEKDD 293 (326)
Q Consensus 247 ~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~~L~~L~l~~c~~~~ 293 (326)
.... .+++|+.|.+.+|+.++.+|.....+++|+.+.+++|..+.
T Consensus 863 ~si~--~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~ 907 (1153)
T PLN03210 863 WWIE--KFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALT 907 (1153)
T ss_pred HHHh--cCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccc
Confidence 3222 56777888888888887777766667777888888886664
|
syringae 6; Provisional |
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=99.66 E-value=8.5e-16 Score=160.18 Aligned_cols=213 Identities=19% Similarity=0.282 Sum_probs=125.5
Q ss_pred hhhhhhccccCCCccEEEcccCCCcccccccCCCCCCCCCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccCcCcc
Q 020456 38 IQKCYEEMIGFCDIEYLQLSDFPCLKEIWHGQALPVSFFNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNCDSIE 117 (326)
Q Consensus 38 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~ 117 (326)
+..+++....+++|+.|+++++..++.++. . ..+++|++|++.+|..+..++.. ++++++|+.|++++|..++
T Consensus 623 l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-l----s~l~~Le~L~L~~c~~L~~lp~s--i~~L~~L~~L~L~~c~~L~ 695 (1153)
T PLN03210 623 LEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-L----SMATNLETLKLSDCSSLVELPSS--IQYLNKLEDLDMSRCENLE 695 (1153)
T ss_pred ccccccccccCCCCCEEECCCCCCcCcCCc-c----ccCCcccEEEecCCCCccccchh--hhccCCCCEEeCCCCCCcC
Confidence 334444556688899999988877776543 2 45789999999999888776654 7888999999999998887
Q ss_pred eeccccccccccCcCCCCCCCccEEecCCCccccccccccccccccccccEEeEecCCCCCccCcc--------------
Q 020456 118 EVLHLEELNADKEHISPLFPKLSELRLIDLPKLKRFCNFTENIIEMLMLWSLTIENCPNMETFVSN-------------- 183 (326)
Q Consensus 118 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~L~~L~l~~C~~l~~~~~~-------------- 183 (326)
.++... .+++|+.|.+++|..++.++.. .++|+.|++.++. +..++..
T Consensus 696 ~Lp~~i-----------~l~sL~~L~Lsgc~~L~~~p~~------~~nL~~L~L~~n~-i~~lP~~~~l~~L~~L~l~~~ 757 (1153)
T PLN03210 696 ILPTGI-----------NLKSLYRLNLSGCSRLKSFPDI------STNISWLDLDETA-IEEFPSNLRLENLDELILCEM 757 (1153)
T ss_pred ccCCcC-----------CCCCCCEEeCCCCCCccccccc------cCCcCeeecCCCc-ccccccccccccccccccccc
Confidence 664321 2347777777777766655531 1223333332221 1111000
Q ss_pred --------------hhhhccCCCCCCceEEecccCcccceeccccccccCccccceeeecccceeecccCCCcceecCCC
Q 020456 184 --------------SVVHVTTDNKKPQKLTLEENFLLADQVQPLFDEKVGEEVKGCIVFERMNYLTLDCLPSLTSFCLGN 249 (326)
Q Consensus 184 --------------~~~~~~~~~~~L~~L~i~~~c~~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~ 249 (326)
...... ++|+.|++ .+|..+..++.. ...+++|+.|++.+|++++.+|...
T Consensus 758 ~~~~l~~~~~~l~~~~~~~~---~sL~~L~L-s~n~~l~~lP~s-----------i~~L~~L~~L~Ls~C~~L~~LP~~~ 822 (1153)
T PLN03210 758 KSEKLWERVQPLTPLMTMLS---PSLTRLFL-SDIPSLVELPSS-----------IQNLHKLEHLEIENCINLETLPTGI 822 (1153)
T ss_pred chhhccccccccchhhhhcc---ccchheeC-CCCCCccccChh-----------hhCCCCCCEEECCCCCCcCeeCCCC
Confidence 000011 25555555 555544443222 3344555566666665555555432
Q ss_pred ccccCCcccEEEeccCCccc--------------------cccCCCCCCCCccEEEeccccCCC
Q 020456 250 YALEFPSLEQVVVRQCPKMK--------------------IFSQGVLDTPMLNKVNVTEEEKDD 293 (326)
Q Consensus 250 ~~~~~~~L~~L~i~~c~~l~--------------------~l~~~~~~~~~L~~L~l~~c~~~~ 293 (326)
.+++|++|.+++|..++ .+|..+..+++|+.|++++|..+.
T Consensus 823 ---~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~ 883 (1153)
T PLN03210 823 ---NLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQ 883 (1153)
T ss_pred ---CccccCEEECCCCCccccccccccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcC
Confidence 34555555555555444 455555567889999999997775
|
syringae 6; Provisional |
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=5.3e-13 Score=138.06 Aligned_cols=15 Identities=13% Similarity=0.457 Sum_probs=11.4
Q ss_pred CCcCCCCeeEEEecc
Q 020456 7 GIVSTPKLHEVQVTE 21 (326)
Q Consensus 7 ~~~~~~~L~~L~~~~ 21 (326)
.+..+++|+.|++.+
T Consensus 88 ~~~~l~~L~~L~Ls~ 102 (968)
T PLN00113 88 AIFRLPYIQTINLSN 102 (968)
T ss_pred HHhCCCCCCEEECCC
Confidence 355788899998883
|
|
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=8.3e-13 Score=136.64 Aligned_cols=86 Identities=9% Similarity=-0.057 Sum_probs=49.4
Q ss_pred eeecccceeecccCCCcceecCCCccccCCcccEEEeccCCccccccCCCCCCCCccEEEeccccCCCCccccccCchHH
Q 020456 226 IVFERMNYLTLDCLPSLTSFCLGNYALEFPSLEQVVVRQCPKMKIFSQGVLDTPMLNKVNVTEEEKDDDDEGCWEGNLND 305 (326)
Q Consensus 226 ~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~ 305 (326)
..+++|++|++.++.....++.... .+++|++|++.++......|..+..+++|+.|++++|.-. ..++..+..+.
T Consensus 281 ~~l~~L~~L~Ls~n~l~~~~p~~~~--~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~--~~~p~~l~~~~ 356 (968)
T PLN00113 281 FSLQKLISLDLSDNSLSGEIPELVI--QLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFS--GEIPKNLGKHN 356 (968)
T ss_pred hhccCcCEEECcCCeeccCCChhHc--CCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCc--CcCChHHhCCC
Confidence 3456777777776643333433222 5677888888777655556666667788888888777322 12222222234
Q ss_pred HHHHHHHhhh
Q 020456 306 TIKQLFNEIV 315 (326)
Q Consensus 306 ~l~~l~i~~~ 315 (326)
+|+.+.+++.
T Consensus 357 ~L~~L~Ls~n 366 (968)
T PLN00113 357 NLTVLDLSTN 366 (968)
T ss_pred CCcEEECCCC
Confidence 5555555443
|
|
| >KOG4341 consensus F-box protein containing LRR [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.5e-12 Score=116.13 Aligned_cols=224 Identities=15% Similarity=0.095 Sum_probs=132.0
Q ss_pred CCCccEEEcccCCCcccccccCCCCCCCCCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccCcCcceecccccccc
Q 020456 48 FCDIEYLQLSDFPCLKEIWHGQALPVSFFNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNCDSIEEVLHLEELNA 127 (326)
Q Consensus 48 ~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~ 127 (326)
+++|+.|.+..|+++...-... .+..|++|++|.+++|+.++.-....+.+.+..++++..++|..++.- .+..
T Consensus 189 C~~l~~l~L~~c~~iT~~~Lk~--la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le----~l~~ 262 (483)
T KOG4341|consen 189 CRKLRHLNLHSCSSITDVSLKY--LAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELE----ALLK 262 (483)
T ss_pred cchhhhhhhcccchhHHHHHHH--HHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHH----HHHH
Confidence 5555555555555544322110 123456666666666666555333333555555666655565544310 0000
Q ss_pred ccCcCCCCCCCccEEecCCCccccccccccccccccccccEEeEecCCCCCccCcchhhhccCCCCCCceEEecccCccc
Q 020456 128 DKEHISPLFPKLSELRLIDLPKLKRFCNFTENIIEMLMLWSLTIENCPNMETFVSNSVVHVTTDNKKPQKLTLEENFLLA 207 (326)
Q Consensus 128 ~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~L~~L~l~~C~~l~~~~~~~~~~~~~~~~~L~~L~i~~~c~~l 207 (326)
+.-..+-+.++++..|..++...... .-..+.+|+.|..++|..+++.....+...+. +|+.|.+ ..|..+
T Consensus 263 ----~~~~~~~i~~lnl~~c~~lTD~~~~~-i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~---~L~~l~l-~~c~~f 333 (483)
T KOG4341|consen 263 ----AAAYCLEILKLNLQHCNQLTDEDLWL-IACGCHALQVLCYSSCTDITDEVLWALGQHCH---NLQVLEL-SGCQQF 333 (483)
T ss_pred ----HhccChHhhccchhhhccccchHHHH-HhhhhhHhhhhcccCCCCCchHHHHHHhcCCC---ceEEEec-cccchh
Confidence 00012345566666776665332110 11235788899999998888887777777777 9999999 999876
Q ss_pred ceeccccccccCccccceeeecccceeecccCCCcceecCCCccccCCcccEEEeccCCcccc-----ccCCCCCCCCcc
Q 020456 208 DQVQPLFDEKVGEEVKGCIVFERMNYLTLDCLPSLTSFCLGNYALEFPSLEQVVVRQCPKMKI-----FSQGVLDTPMLN 282 (326)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~-----l~~~~~~~~~L~ 282 (326)
+... +.+-..+.+.|+.+++.+|...+.-........||.|+++.++.|..++. +..+...+..|+
T Consensus 334 sd~~---------ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~ 404 (483)
T KOG4341|consen 334 SDRG---------FTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLE 404 (483)
T ss_pred hhhh---------hhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccc
Confidence 6542 11113455778888888877655443333334788888888888876654 344445667788
Q ss_pred EEEeccccCCCCc
Q 020456 283 KVNVTEEEKDDDD 295 (326)
Q Consensus 283 ~L~l~~c~~~~~~ 295 (326)
.+.+++|+...+.
T Consensus 405 ~lEL~n~p~i~d~ 417 (483)
T KOG4341|consen 405 VLELDNCPLITDA 417 (483)
T ss_pred eeeecCCCCchHH
Confidence 8888888777654
|
|
| >KOG4341 consensus F-box protein containing LRR [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.91 E-value=9.9e-12 Score=111.00 Aligned_cols=226 Identities=16% Similarity=0.130 Sum_probs=138.0
Q ss_pred CCccEEEcccCCCcccccccCCCCCCCCCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccCcCcceeccccccccc
Q 020456 49 CDIEYLQLSDFPCLKEIWHGQALPVSFFNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNCDSIEEVLHLEELNAD 128 (326)
Q Consensus 49 ~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~ 128 (326)
.-|+.|.+.||..+..-.... ....+||+++|.+.+|.++++....++...++.|++|.+..|..+++..- .
T Consensus 138 g~lk~LSlrG~r~v~~sslrt--~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~L-k----- 209 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRT--FASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSL-K----- 209 (483)
T ss_pred cccccccccccccCCcchhhH--HhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHH-H-----
Confidence 458999999988876422211 23568999999999999988887777788899999999999887765411 1
Q ss_pred cCcCCCCCCCccEEecCCCccccccccccccccccccccEEeEecCCCCCccCcchhhhccC------------------
Q 020456 129 KEHISPLFPKLSELRLIDLPKLKRFCNFTENIIEMLMLWSLTIENCPNMETFVSNSVVHVTT------------------ 190 (326)
Q Consensus 129 ~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~L~~L~l~~C~~l~~~~~~~~~~~~~------------------ 190 (326)
.....+|+|+.|++++|+.+..--. ......+..++.+...+|.....-....+...+.
T Consensus 210 --~la~gC~kL~~lNlSwc~qi~~~gv-~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~ 286 (483)
T KOG4341|consen 210 --YLAEGCRKLKYLNLSWCPQISGNGV-QALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDL 286 (483)
T ss_pred --HHHHhhhhHHHhhhccCchhhcCcc-hHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHH
Confidence 1223567999999999987765100 0012233445555555555444332222222222
Q ss_pred -----CCCCCceEEecccCcccceeccccccccCccccceeeecccceeecccCCCcceecCCCccccCCcccEEEeccC
Q 020456 191 -----DNKKPQKLTLEENFLLADQVQPLFDEKVGEEVKGCIVFERMNYLTLDCLPSLTSFCLGNYALEFPSLEQVVVRQC 265 (326)
Q Consensus 191 -----~~~~L~~L~i~~~c~~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c 265 (326)
....|+.|.. .+|..++..+-. .-....++|+.|.+.+|.+++..........++.|+.+.+.+|
T Consensus 287 ~~i~~~c~~lq~l~~-s~~t~~~d~~l~---------aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~ 356 (483)
T KOG4341|consen 287 WLIACGCHALQVLCY-SSCTDITDEVLW---------ALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEEC 356 (483)
T ss_pred HHHhhhhhHhhhhcc-cCCCCCchHHHH---------HHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhccccc
Confidence 0003444444 444433322111 0022346788888888887776655444457788888888777
Q ss_pred Ccccc--ccCCCCCCCCccEEEeccccCCCCc
Q 020456 266 PKMKI--FSQGVLDTPMLNKVNVTEEEKDDDD 295 (326)
Q Consensus 266 ~~l~~--l~~~~~~~~~L~~L~l~~c~~~~~~ 295 (326)
.-+.. +......++.|+++.++.|+.++++
T Consensus 357 ~~~~d~tL~sls~~C~~lr~lslshce~itD~ 388 (483)
T KOG4341|consen 357 GLITDGTLASLSRNCPRLRVLSLSHCELITDE 388 (483)
T ss_pred ceehhhhHhhhccCCchhccCChhhhhhhhhh
Confidence 75543 3334446888888888888777766
|
|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.73 E-value=5.5e-10 Score=104.73 Aligned_cols=214 Identities=18% Similarity=0.163 Sum_probs=107.2
Q ss_pred cccCCCccEEEcccCCCcccccccCCCCCCCCCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccCcCcceeccccc
Q 020456 45 MIGFCDIEYLQLSDFPCLKEIWHGQALPVSFFNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNCDSIEEVLHLEE 124 (326)
Q Consensus 45 ~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~ 124 (326)
+..+..|..|+++. ..+++.+.+. ..-.|+-.|.+++. ++..++ ...+-++..|-.|++++. .++.+++..+
T Consensus 99 iF~l~dLt~lDLSh-NqL~EvP~~L----E~AKn~iVLNLS~N-~IetIP-n~lfinLtDLLfLDLS~N-rLe~LPPQ~R 170 (1255)
T KOG0444|consen 99 IFRLKDLTILDLSH-NQLREVPTNL----EYAKNSIVLNLSYN-NIETIP-NSLFINLTDLLFLDLSNN-RLEMLPPQIR 170 (1255)
T ss_pred hcccccceeeecch-hhhhhcchhh----hhhcCcEEEEcccC-ccccCC-chHHHhhHhHhhhccccc-hhhhcCHHHH
Confidence 44466777777774 4456555444 22356777777775 344443 344667777777777763 4555544322
Q ss_pred cccccCcCCCCCCCccEEecCCCccccccccccccccccccccEEeEecCCCCCccCcchhhhccCCCCCCceEEecccC
Q 020456 125 LNADKEHISPLFPKLSELRLIDLPKLKRFCNFTENIIEMLMLWSLTIENCPNMETFVSNSVVHVTTDNKKPQKLTLEENF 204 (326)
Q Consensus 125 ~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~L~~L~l~~C~~l~~~~~~~~~~~~~~~~~L~~L~i~~~c 204 (326)
.+..|++|.+++-| |..+.-. .+.++++|+.|++++..+-.+-+|.++- .+. +|+.+++ +|
T Consensus 171 ----------RL~~LqtL~Ls~NP-L~hfQLr--QLPsmtsL~vLhms~TqRTl~N~Ptsld-~l~---NL~dvDl--S~ 231 (1255)
T KOG0444|consen 171 ----------RLSMLQTLKLSNNP-LNHFQLR--QLPSMTSLSVLHMSNTQRTLDNIPTSLD-DLH---NLRDVDL--SE 231 (1255)
T ss_pred ----------HHhhhhhhhcCCCh-hhHHHHh--cCccchhhhhhhcccccchhhcCCCchh-hhh---hhhhccc--cc
Confidence 12366666666544 2211100 2233555666666654433332233332 222 6666665 55
Q ss_pred cccceeccccccccCccccceeeecccceeecccCCCcceecCCCccccCCcccEEEeccCCccccccCCCCCCCCccEE
Q 020456 205 LLADQVQPLFDEKVGEEVKGCIVFERMNYLTLDCLPSLTSFCLGNYALEFPSLEQVVVRQCPKMKIFSQGVLDTPMLNKV 284 (326)
Q Consensus 205 ~~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~~L~~L 284 (326)
+++..++.- +..+++|++|++++ ..++.+..... .+.+|++|.++. ..++.+|.+++.++.|++|
T Consensus 232 N~Lp~vPec-----------ly~l~~LrrLNLS~-N~iteL~~~~~--~W~~lEtLNlSr-NQLt~LP~avcKL~kL~kL 296 (1255)
T KOG0444|consen 232 NNLPIVPEC-----------LYKLRNLRRLNLSG-NKITELNMTEG--EWENLETLNLSR-NQLTVLPDAVCKLTKLTKL 296 (1255)
T ss_pred cCCCcchHH-----------HhhhhhhheeccCc-CceeeeeccHH--HHhhhhhhcccc-chhccchHHHhhhHHHHHH
Confidence 555443211 33455666666665 44444443322 444555555533 3344455555555555555
Q ss_pred EeccccCCCCccccccC
Q 020456 285 NVTEEEKDDDDEGCWEG 301 (326)
Q Consensus 285 ~l~~c~~~~~~~~~~~~ 301 (326)
++.+. ++.-+.++.+.
T Consensus 297 y~n~N-kL~FeGiPSGI 312 (1255)
T KOG0444|consen 297 YANNN-KLTFEGIPSGI 312 (1255)
T ss_pred HhccC-cccccCCccch
Confidence 55433 23333444444
|
|
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=98.61 E-value=3.9e-07 Score=90.70 Aligned_cols=204 Identities=16% Similarity=0.163 Sum_probs=116.5
Q ss_pred CCccEEEcccCCCcccccccCCCCCCCCCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccCcCcceeccccccccc
Q 020456 49 CDIEYLQLSDFPCLKEIWHGQALPVSFFNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNCDSIEEVLHLEELNAD 128 (326)
Q Consensus 49 ~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~ 128 (326)
++|+.|++.++ ++..++. ..+++|++|++++| +++.++.. + .++|+.|++++|. +..++..
T Consensus 199 ~~L~~L~Ls~N-~LtsLP~------~l~~nL~~L~Ls~N-~LtsLP~~-l---~~~L~~L~Ls~N~-L~~LP~~------ 259 (754)
T PRK15370 199 EQITTLILDNN-ELKSLPE------NLQGNIKTLYANSN-QLTSIPAT-L---PDTIQEMELSINR-ITELPER------ 259 (754)
T ss_pred cCCcEEEecCC-CCCcCCh------hhccCCCEEECCCC-ccccCChh-h---hccccEEECcCCc-cCcCChh------
Confidence 46777777654 4454332 23467888888776 35554322 1 3467788877764 3333210
Q ss_pred cCcCCCCCCCccEEecCCCccccccccccccccccccccEEeEecCCCCCccCcchhhhccCCCCCCceEEecccCcccc
Q 020456 129 KEHISPLFPKLSELRLIDLPKLKRFCNFTENIIEMLMLWSLTIENCPNMETFVSNSVVHVTTDNKKPQKLTLEENFLLAD 208 (326)
Q Consensus 129 ~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~L~~L~l~~C~~l~~~~~~~~~~~~~~~~~L~~L~i~~~c~~l~ 208 (326)
.+.+|+.|++++ .+++.++. .+ +++|+.|++++| +++.++ ..+. . +|+.|++ .++. ++
T Consensus 260 ------l~s~L~~L~Ls~-N~L~~LP~---~l--~~sL~~L~Ls~N-~Lt~LP-~~lp---~---sL~~L~L-s~N~-Lt 317 (754)
T PRK15370 260 ------LPSALQSLDLFH-NKISCLPE---NL--PEELRYLSVYDN-SIRTLP-AHLP---S---GITHLNV-QSNS-LT 317 (754)
T ss_pred ------HhCCCCEEECcC-CccCcccc---cc--CCCCcEEECCCC-ccccCc-ccch---h---hHHHHHh-cCCc-cc
Confidence 123677888764 46666654 22 257888888775 555552 2222 1 5777777 5543 33
Q ss_pred eeccccccccCccccceeeecccceeecccCCCcceecCCCccccCCcccEEEeccCCccccccCCCCCCCCccEEEecc
Q 020456 209 QVQPLFDEKVGEEVKGCIVFERMNYLTLDCLPSLTSFCLGNYALEFPSLEQVVVRQCPKMKIFSQGVLDTPMLNKVNVTE 288 (326)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~~L~~L~l~~ 288 (326)
.+... ..++|+.|++.++ .++.++.. -.++|+.|+++++ .++.+|..+ .++|++|++++
T Consensus 318 ~LP~~-------------l~~sL~~L~Ls~N-~Lt~LP~~----l~~sL~~L~Ls~N-~L~~LP~~l--p~~L~~LdLs~ 376 (754)
T PRK15370 318 ALPET-------------LPPGLKTLEAGEN-ALTSLPAS----LPPELQVLDVSKN-QITVLPETL--PPTITTLDVSR 376 (754)
T ss_pred cCCcc-------------ccccceeccccCC-ccccCChh----hcCcccEEECCCC-CCCcCChhh--cCCcCEEECCC
Confidence 32111 2257888888776 35555532 2358888888776 456677654 46888888888
Q ss_pred ccCCCCccccccCchHHHHHHHHHhhhhhhh
Q 020456 289 EEKDDDDEGCWEGNLNDTIKQLFNEIVSINE 319 (326)
Q Consensus 289 c~~~~~~~~~~~~~~~~~l~~l~i~~~~~~~ 319 (326)
|. +. .++.. ...+|+.+.+.+..+..
T Consensus 377 N~-Lt--~LP~~--l~~sL~~LdLs~N~L~~ 402 (754)
T PRK15370 377 NA-LT--NLPEN--LPAALQIMQASRNNLVR 402 (754)
T ss_pred Cc-CC--CCCHh--HHHHHHHHhhccCCccc
Confidence 73 21 22222 23467777776655443
|
|
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.3e-08 Score=94.87 Aligned_cols=59 Identities=22% Similarity=0.254 Sum_probs=31.0
Q ss_pred cCCCccEEEcccCCCcccccccCCCCCCCCCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEcc
Q 020456 47 GFCDIEYLQLSDFPCLKEIWHGQALPVSFFNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRN 112 (326)
Q Consensus 47 ~~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~ 112 (326)
.+|+|+++++.+ ..+..||... ....+|+.|.+... .++.+.... ++-++.|+.|+++.
T Consensus 100 nl~nLq~v~l~~-N~Lt~IP~f~----~~sghl~~L~L~~N-~I~sv~se~-L~~l~alrslDLSr 158 (873)
T KOG4194|consen 100 NLPNLQEVNLNK-NELTRIPRFG----HESGHLEKLDLRHN-LISSVTSEE-LSALPALRSLDLSR 158 (873)
T ss_pred cCCcceeeeecc-chhhhccccc----ccccceeEEeeecc-ccccccHHH-HHhHhhhhhhhhhh
Confidence 366777777653 3345555433 23355666666654 233333322 45556666666654
|
|
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.54 E-value=2.8e-07 Score=86.29 Aligned_cols=59 Identities=19% Similarity=0.148 Sum_probs=34.8
Q ss_pred CCCccEEEcccCCCcccccccCCCCCCCCCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccC
Q 020456 48 FCDIEYLQLSDFPCLKEIWHGQALPVSFFNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNC 113 (326)
Q Consensus 48 ~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c 113 (326)
++.=++|++++ ..+.++-... ...++||+++++.+. .++.++.. .....+|+.|++.+.
T Consensus 77 p~~t~~Ldlsn-Nkl~~id~~~---f~nl~nLq~v~l~~N-~Lt~IP~f--~~~sghl~~L~L~~N 135 (873)
T KOG4194|consen 77 PSQTQTLDLSN-NKLSHIDFEF---FYNLPNLQEVNLNKN-ELTRIPRF--GHESGHLEKLDLRHN 135 (873)
T ss_pred ccceeeeeccc-cccccCcHHH---HhcCCcceeeeeccc-hhhhcccc--cccccceeEEeeecc
Confidence 45556788875 3344422111 145688888888876 35555443 334456888888764
|
|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.52 E-value=3.2e-09 Score=99.73 Aligned_cols=207 Identities=18% Similarity=0.151 Sum_probs=134.1
Q ss_pred cCCCccEEEcccCCCcccccccCCCCCCCCCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccCcCcceeccccccc
Q 020456 47 GFCDIEYLQLSDFPCLKEIWHGQALPVSFFNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNCDSIEEVLHLEELN 126 (326)
Q Consensus 47 ~~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~ 126 (326)
-+.+|++|.+++.|-... -..+ + -+..+|+.|++++.+.-..-+|.+ +..+.||+.++++. ..+..++.-
T Consensus 171 RL~~LqtL~Ls~NPL~hf-QLrQ-L--PsmtsL~vLhms~TqRTl~N~Pts-ld~l~NL~dvDlS~-N~Lp~vPec---- 240 (1255)
T KOG0444|consen 171 RLSMLQTLKLSNNPLNHF-QLRQ-L--PSMTSLSVLHMSNTQRTLDNIPTS-LDDLHNLRDVDLSE-NNLPIVPEC---- 240 (1255)
T ss_pred HHhhhhhhhcCCChhhHH-HHhc-C--ccchhhhhhhcccccchhhcCCCc-hhhhhhhhhccccc-cCCCcchHH----
Confidence 366788888877664221 0011 2 244567777777765443333333 67788888888875 334332210
Q ss_pred cccCcCCCCCCCccEEecCCCccccccccccccccccccccEEeEecCCCCCccCcchhhhccCCCCCCceEEecccCcc
Q 020456 127 ADKEHISPLFPKLSELRLIDLPKLKRFCNFTENIIEMLMLWSLTIENCPNMETFVSNSVVHVTTDNKKPQKLTLEENFLL 206 (326)
Q Consensus 127 ~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~L~~L~l~~C~~l~~~~~~~~~~~~~~~~~L~~L~i~~~c~~ 206 (326)
.-..++|+.|++++ .+++.+.. ....+.+|++|+++. +.++.+ |..+.+ ++ .|+.|.. .+-.-
T Consensus 241 ------ly~l~~LrrLNLS~-N~iteL~~---~~~~W~~lEtLNlSr-NQLt~L-P~avcK-L~---kL~kLy~-n~NkL 303 (1255)
T KOG0444|consen 241 ------LYKLRNLRRLNLSG-NKITELNM---TEGEWENLETLNLSR-NQLTVL-PDAVCK-LT---KLTKLYA-NNNKL 303 (1255)
T ss_pred ------HhhhhhhheeccCc-Cceeeeec---cHHHHhhhhhhcccc-chhccc-hHHHhh-hH---HHHHHHh-ccCcc
Confidence 01246888899887 45666655 556788999999987 467777 444432 33 6777776 43331
Q ss_pred cceeccccccccCccccceeeecccceeecccCCCcceecCCCccccCCcccEEEeccCCccccccCCCCCCCCccEEEe
Q 020456 207 ADQVQPLFDEKVGEEVKGCIVFERMNYLTLDCLPSLTSFCLGNYALEFPSLEQVVVRQCPKMKIFSQGVLDTPMLNKVNV 286 (326)
Q Consensus 207 l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~~L~~L~l 286 (326)
--+-.+++ +.-+.+|+.+...+ .+|+-+|.+.+ .|+.|++|.+ +|..+-.+|+++..++.|+.|++
T Consensus 304 ~FeGiPSG----------IGKL~~Levf~aan-N~LElVPEglc--RC~kL~kL~L-~~NrLiTLPeaIHlL~~l~vLDl 369 (1255)
T KOG0444|consen 304 TFEGIPSG----------IGKLIQLEVFHAAN-NKLELVPEGLC--RCVKLQKLKL-DHNRLITLPEAIHLLPDLKVLDL 369 (1255)
T ss_pred cccCCccc----------hhhhhhhHHHHhhc-cccccCchhhh--hhHHHHHhcc-cccceeechhhhhhcCCcceeec
Confidence 11111121 44566777777766 67888888777 8999999988 78888889999988999999999
Q ss_pred ccccCCCC
Q 020456 287 TEEEKDDD 294 (326)
Q Consensus 287 ~~c~~~~~ 294 (326)
...+.+..
T Consensus 370 reNpnLVM 377 (1255)
T KOG0444|consen 370 RENPNLVM 377 (1255)
T ss_pred cCCcCccC
Confidence 99887653
|
|
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=2.3e-06 Score=85.08 Aligned_cols=51 Identities=22% Similarity=0.245 Sum_probs=25.3
Q ss_pred CCCccEEecCCCccccccccccccccccccccEEeEecCCCCCccCcchhhhccCCCCCCceEEeccc
Q 020456 136 FPKLSELRLIDLPKLKRFCNFTENIIEMLMLWSLTIENCPNMETFVSNSVVHVTTDNKKPQKLTLEEN 203 (326)
Q Consensus 136 ~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~L~~L~l~~C~~l~~~~~~~~~~~~~~~~~L~~L~i~~~ 203 (326)
+++|+.|++++. +++.++.. ..+|+.|.+++| +++.++. . .. +|++|++ .+
T Consensus 301 p~~L~~LdLS~N-~L~~Lp~l------p~~L~~L~Ls~N-~L~~LP~--l---p~---~Lq~LdL-S~ 351 (788)
T PRK15387 301 PPGLQELSVSDN-QLASLPAL------PSELCKLWAYNN-QLTSLPT--L---PS---GLQELSV-SD 351 (788)
T ss_pred ccccceeECCCC-ccccCCCC------cccccccccccC-ccccccc--c---cc---ccceEec-CC
Confidence 356777777664 45444421 234555666553 3443321 1 12 5666666 54
|
|
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=98.46 E-value=5.2e-08 Score=87.90 Aligned_cols=224 Identities=15% Similarity=0.004 Sum_probs=116.2
Q ss_pred cccCCCccEEEcccCCCc--ccccccCCCCCCCCCCccEEEEecCCCCCcCCchhHHhhCC---CCCEEEEccCcCccee
Q 020456 45 MIGFCDIEYLQLSDFPCL--KEIWHGQALPVSFFNNLEELEVDDCTNMSSAIPANLLRCLN---NLRCLEVRNCDSIEEV 119 (326)
Q Consensus 45 ~~~~~~L~~L~l~~~~~l--~~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~---~L~~L~l~~c~~l~~l 119 (326)
+...++|+.|.+.++..- ...|.........+++|++|++++|..- ...+. .+..+. +|++|++++|..-...
T Consensus 47 l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~~~~-~~~~l~~~~~L~~L~ls~~~~~~~~ 124 (319)
T cd00116 47 LRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALG-PDGCG-VLESLLRSSSLQELKLNNNGLGDRG 124 (319)
T ss_pred HhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCC-hhHHH-HHHHHhccCcccEEEeeCCccchHH
Confidence 445777888888765432 1111110000123678999999888643 22222 133344 4999999887532110
Q ss_pred ccccccccccCcCCCCC-CCccEEecCCCcccc----ccccccccccccccccEEeEecCCCCCccCcchhhhccCCCCC
Q 020456 120 LHLEELNADKEHISPLF-PKLSELRLIDLPKLK----RFCNFTENIIEMLMLWSLTIENCPNMETFVSNSVVHVTTDNKK 194 (326)
Q Consensus 120 ~~~~~~~~~~~~~~~~~-~~L~~L~l~~c~~L~----~~~~~~~~~~~~~~L~~L~l~~C~~l~~~~~~~~~~~~~~~~~ 194 (326)
... .......+ ++|+.|++.+|.--. .+.. .+..+++|++|++++|. +.......+...+...++
T Consensus 125 -----~~~-l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~---~~~~~~~L~~L~l~~n~-l~~~~~~~l~~~l~~~~~ 194 (319)
T cd00116 125 -----LRL-LAKGLKDLPPALEKLVLGRNRLEGASCEALAK---ALRANRDLKELNLANNG-IGDAGIRALAEGLKANCN 194 (319)
T ss_pred -----HHH-HHHHHHhCCCCceEEEcCCCcCCchHHHHHHH---HHHhCCCcCEEECcCCC-CchHHHHHHHHHHHhCCC
Confidence 000 00001122 688999998875221 1111 34455788999998863 432211122211212238
Q ss_pred CceEEecccCcccceeccccccccCccccceeeecccceeecccCCCcceecCCC----ccccCCcccEEEeccCCcc--
Q 020456 195 PQKLTLEENFLLADQVQPLFDEKVGEEVKGCIVFERMNYLTLDCLPSLTSFCLGN----YALEFPSLEQVVVRQCPKM-- 268 (326)
Q Consensus 195 L~~L~i~~~c~~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~----~~~~~~~L~~L~i~~c~~l-- 268 (326)
|++|++ .+|.--.... . ........+++|++|++.+|+ ++...... .....+.|++|++.+|.--
T Consensus 195 L~~L~L-~~n~i~~~~~-~------~l~~~~~~~~~L~~L~ls~n~-l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~ 265 (319)
T cd00116 195 LEVLDL-NNNGLTDEGA-S------ALAETLASLKSLEVLNLGDNN-LTDAGAAALASALLSPNISLLTLSLSCNDITDD 265 (319)
T ss_pred CCEEec-cCCccChHHH-H------HHHHHhcccCCCCEEecCCCc-CchHHHHHHHHHHhccCCCceEEEccCCCCCcH
Confidence 999998 8775221100 0 011113356789999999875 33211100 0002468999999887532
Q ss_pred --ccccCCCCCCCCccEEEeccc
Q 020456 269 --KIFSQGVLDTPMLNKVNVTEE 289 (326)
Q Consensus 269 --~~l~~~~~~~~~L~~L~l~~c 289 (326)
..+.......+.|++++++++
T Consensus 266 ~~~~l~~~~~~~~~L~~l~l~~N 288 (319)
T cd00116 266 GAKDLAEVLAEKESLLELDLRGN 288 (319)
T ss_pred HHHHHHHHHhcCCCccEEECCCC
Confidence 223333334578999999887
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=4.2e-07 Score=90.48 Aligned_cols=81 Identities=17% Similarity=0.157 Sum_probs=48.3
Q ss_pred CCCccEEEcccCCCcccccccCCCCCCCCCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccCcCcceecccccccc
Q 020456 48 FCDIEYLQLSDFPCLKEIWHGQALPVSFFNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNCDSIEEVLHLEELNA 127 (326)
Q Consensus 48 ~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~ 127 (326)
+++|++|++.++ .+..++. ...++|+.|++++|. +..++. .+ ..+|+.|+++++ .+..++..
T Consensus 219 ~~nL~~L~Ls~N-~LtsLP~------~l~~~L~~L~Ls~N~-L~~LP~-~l---~s~L~~L~Ls~N-~L~~LP~~----- 280 (754)
T PRK15370 219 QGNIKTLYANSN-QLTSIPA------TLPDTIQEMELSINR-ITELPE-RL---PSALQSLDLFHN-KISCLPEN----- 280 (754)
T ss_pred ccCCCEEECCCC-ccccCCh------hhhccccEEECcCCc-cCcCCh-hH---hCCCCEEECcCC-ccCccccc-----
Confidence 468999998865 3554432 233678888888874 555543 22 357888888754 45443210
Q ss_pred ccCcCCCCCCCccEEecCCCccccccc
Q 020456 128 DKEHISPLFPKLSELRLIDLPKLKRFC 154 (326)
Q Consensus 128 ~~~~~~~~~~~L~~L~l~~c~~L~~~~ 154 (326)
.+++|+.|+++++ +++.++
T Consensus 281 -------l~~sL~~L~Ls~N-~Lt~LP 299 (754)
T PRK15370 281 -------LPEELRYLSVYDN-SIRTLP 299 (754)
T ss_pred -------cCCCCcEEECCCC-ccccCc
Confidence 1236777777664 455544
|
|
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.43 E-value=4.6e-07 Score=91.65 Aligned_cols=216 Identities=18% Similarity=0.207 Sum_probs=121.0
Q ss_pred cCCCccEEEcccCCCcccccccCCCCCCCCCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccCcCcceeccccc-c
Q 020456 47 GFCDIEYLQLSDFPCLKEIWHGQALPVSFFNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNCDSIEEVLHLEE-L 125 (326)
Q Consensus 47 ~~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~-~ 125 (326)
.+|.|.+|+++++..+.++|... +.+-+||+|+++++. +..+|.. +++++.|.+|++.....++.++.... +
T Consensus 569 ~m~~LrVLDLs~~~~l~~LP~~I----~~Li~LryL~L~~t~-I~~LP~~--l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L 641 (889)
T KOG4658|consen 569 SLPLLRVLDLSGNSSLSKLPSSI----GELVHLRYLDLSDTG-ISHLPSG--LGNLKKLIYLNLEVTGRLESIPGILLEL 641 (889)
T ss_pred hCcceEEEECCCCCccCcCChHH----hhhhhhhcccccCCC-ccccchH--HHHHHhhheeccccccccccccchhhhc
Confidence 48899999999988888776655 678899999888874 5555443 67777777777766554332211000 0
Q ss_pred c---------cc--cC----cCCCCCCCccEEecCCCcc-----------cc----cc-------ccccccccccccccE
Q 020456 126 N---------AD--KE----HISPLFPKLSELRLIDLPK-----------LK----RF-------CNFTENIIEMLMLWS 168 (326)
Q Consensus 126 ~---------~~--~~----~~~~~~~~L~~L~l~~c~~-----------L~----~~-------~~~~~~~~~~~~L~~ 168 (326)
. .. .. .....+.+|+.+.+..... +. .+ ......+..+.+|++
T Consensus 642 ~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~ 721 (889)
T KOG4658|consen 642 QSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEE 721 (889)
T ss_pred ccccEEEeeccccccchhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhhhcccccceeecccccccCcce
Confidence 0 00 00 0001122333332221111 00 00 000014456677888
Q ss_pred EeEecCCCCCccCcc-----------hhhh----ccC---------CCCCCceEEecccCcccceeccccccccCccccc
Q 020456 169 LTIENCPNMETFVSN-----------SVVH----VTT---------DNKKPQKLTLEENFLLADQVQPLFDEKVGEEVKG 224 (326)
Q Consensus 169 L~l~~C~~l~~~~~~-----------~~~~----~~~---------~~~~L~~L~i~~~c~~l~~~~~~~~~~~~~~~~~ 224 (326)
|.|.+|......... .... .+. -.|+|+.|.+ .+|+.++++.+.......... .
T Consensus 722 L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l-~~~~~~e~~i~~~k~~~~l~~-~ 799 (889)
T KOG4658|consen 722 LSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSL-VSCRLLEDIIPKLKALLELKE-L 799 (889)
T ss_pred EEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccchhhccCcccEEEE-ecccccccCCCHHHHhhhccc-E
Confidence 888887664321100 0000 000 0169999999 999999888765321111111 1
Q ss_pred eeeeccccee-ecccCCCcceecCCCccccCCcccEEEeccCCccccccC
Q 020456 225 CIVFERMNYL-TLDCLPSLTSFCLGNYALEFPSLEQVVVRQCPKMKIFSQ 273 (326)
Q Consensus 225 ~~~l~~L~~L-~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~ 273 (326)
...|.++..+ .+.+.+.+..+..... .++.|+.+.+.+||+++.+|.
T Consensus 800 i~~f~~~~~l~~~~~l~~l~~i~~~~l--~~~~l~~~~ve~~p~l~~~P~ 847 (889)
T KOG4658|consen 800 ILPFNKLEGLRMLCSLGGLPQLYWLPL--SFLKLEELIVEECPKLGKLPL 847 (889)
T ss_pred EecccccccceeeecCCCCceeEeccc--CccchhheehhcCcccccCcc
Confidence 4456677777 4777777776665433 666799999999999997654
|
|
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.33 E-value=1.5e-07 Score=85.17 Aligned_cols=36 Identities=22% Similarity=0.366 Sum_probs=15.4
Q ss_pred CCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEcc
Q 020456 76 FNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRN 112 (326)
Q Consensus 76 ~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~ 112 (326)
+.+|++..+.+|+ +...+.....+.|++++.|+++.
T Consensus 120 ~kkL~~IsLdn~~-V~~~~~~~~~k~~~~v~~LdLS~ 155 (505)
T KOG3207|consen 120 LKKLREISLDNYR-VEDAGIEEYSKILPNVRDLDLSR 155 (505)
T ss_pred HHhhhheeecCcc-ccccchhhhhhhCCcceeecchh
Confidence 4445555555543 22222212244455555555543
|
|
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=98.32 E-value=5.1e-06 Score=82.74 Aligned_cols=55 Identities=15% Similarity=0.163 Sum_probs=39.4
Q ss_pred cccceeecccCCCcceecCCCccccCCcccEEEeccCCccccccCCCCCCCCccEEEecccc
Q 020456 229 ERMNYLTLDCLPSLTSFCLGNYALEFPSLEQVVVRQCPKMKIFSQGVLDTPMLNKVNVTEEE 290 (326)
Q Consensus 229 ~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~~L~~L~l~~c~ 290 (326)
++|+.|++.+. .++.+|. ...+|+.|++++ ..++.+|..+..+++|+.|++++++
T Consensus 402 s~L~~LdLS~N-~LssIP~-----l~~~L~~L~Ls~-NqLt~LP~sl~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 402 SELKELMVSGN-RLTSLPM-----LPSGLLSLSVYR-NQLTRLPESLIHLSSETTVNLEGNP 456 (788)
T ss_pred cCCCEEEccCC-cCCCCCc-----chhhhhhhhhcc-CcccccChHHhhccCCCeEECCCCC
Confidence 56888888875 3565553 223677787765 4577788877788899999998873
|
|
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Probab=98.31 E-value=4.3e-06 Score=76.78 Aligned_cols=161 Identities=14% Similarity=0.187 Sum_probs=84.0
Q ss_pred CCCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccCcCcceeccccccccccCcCCCCCCCccEEecCCCccccccc
Q 020456 75 FFNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNCDSIEEVLHLEELNADKEHISPLFPKLSELRLIDLPKLKRFC 154 (326)
Q Consensus 75 ~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~ 154 (326)
.+.++++|+|++| .++.++ . --.+|++|.+.+|..++.++.. ..++|+.|.+.+|..+..+|
T Consensus 50 ~~~~l~~L~Is~c-~L~sLP-~----LP~sLtsL~Lsnc~nLtsLP~~------------LP~nLe~L~Ls~Cs~L~sLP 111 (426)
T PRK15386 50 EARASGRLYIKDC-DIESLP-V----LPNELTEITIENCNNLTTLPGS------------IPEGLEKLTVCHCPEISGLP 111 (426)
T ss_pred HhcCCCEEEeCCC-CCcccC-C----CCCCCcEEEccCCCCcccCCch------------hhhhhhheEccCcccccccc
Confidence 3577788888887 565554 1 1245888888777776544310 12477778887777676555
Q ss_pred cccccccccccccEEeEecCCCCCccCcchhhhccCCCCCCceEEecccCcccceeccccccccCccccceeee-cccce
Q 020456 155 NFTENIIEMLMLWSLTIENCPNMETFVSNSVVHVTTDNKKPQKLTLEENFLLADQVQPLFDEKVGEEVKGCIVF-ERMNY 233 (326)
Q Consensus 155 ~~~~~~~~~~~L~~L~l~~C~~l~~~~~~~~~~~~~~~~~L~~L~i~~~c~~l~~~~~~~~~~~~~~~~~~~~l-~~L~~ 233 (326)
+.|+.|.+. |.....+ ..+. . +|++|.+ .+........ . ...+ ++|++
T Consensus 112 ---------~sLe~L~L~-~n~~~~L--~~LP---s---sLk~L~I-~~~n~~~~~~-l-----------p~~LPsSLk~ 160 (426)
T PRK15386 112 ---------ESVRSLEIK-GSATDSI--KNVP---N---GLTSLSI-NSYNPENQAR-I-----------DNLISPSLKT 160 (426)
T ss_pred ---------cccceEEeC-CCCCccc--ccCc---c---hHhheec-cccccccccc-c-----------ccccCCcccE
Confidence 345666664 2222221 1111 1 5666766 4433111100 0 0123 47888
Q ss_pred eecccCCCcceecCCCccccCCcccEEEeccCC--ccccccCCCCCCCCccEEEeccccCC
Q 020456 234 LTLDCLPSLTSFCLGNYALEFPSLEQVVVRQCP--KMKIFSQGVLDTPMLNKVNVTEEEKD 292 (326)
Q Consensus 234 L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~--~l~~l~~~~~~~~~L~~L~l~~c~~~ 292 (326)
|.+.+|..+. .|.. .+ .+|+.|.+..+. .+. ++... -.+++ .+.+.+|.+.
T Consensus 161 L~Is~c~~i~-LP~~-LP---~SLk~L~ls~n~~~sLe-I~~~s-LP~nl-~L~f~n~lkL 213 (426)
T PRK15386 161 LSLTGCSNII-LPEK-LP---ESLQSITLHIEQKTTWN-ISFEG-FPDGL-DIDLQNSVLL 213 (426)
T ss_pred EEecCCCccc-Cccc-cc---ccCcEEEeccccccccc-Ccccc-ccccc-Eechhhhccc
Confidence 8888887553 2221 11 378888876532 222 11111 12455 6777766443
|
|
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Probab=98.25 E-value=5.2e-06 Score=76.22 Aligned_cols=66 Identities=21% Similarity=0.368 Sum_probs=48.4
Q ss_pred hhccccCCCccEEEcccCCCcccccccCCCCCCCCCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccCcCccee
Q 020456 42 YEEMIGFCDIEYLQLSDFPCLKEIWHGQALPVSFFNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNCDSIEEV 119 (326)
Q Consensus 42 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l 119 (326)
+..+..+.+++.|++++| .++.++. +| ++|++|.+.+|.+++.++.. + .++|++|.+.+|..+..+
T Consensus 45 ~~r~~~~~~l~~L~Is~c-~L~sLP~---LP----~sLtsL~Lsnc~nLtsLP~~--L--P~nLe~L~Ls~Cs~L~sL 110 (426)
T PRK15386 45 TPQIEEARASGRLYIKDC-DIESLPV---LP----NELTEITIENCNNLTTLPGS--I--PEGLEKLTVCHCPEISGL 110 (426)
T ss_pred HHHHHHhcCCCEEEeCCC-CCcccCC---CC----CCCcEEEccCCCCcccCCch--h--hhhhhheEccCccccccc
Confidence 334556789999999988 6676541 33 57999999999988665432 2 368999999999777544
|
|
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.23 E-value=7.2e-08 Score=83.25 Aligned_cols=39 Identities=23% Similarity=0.323 Sum_probs=22.5
Q ss_pred CCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccCcC
Q 020456 77 NNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNCDS 115 (326)
Q Consensus 77 ~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~ 115 (326)
.+|+.|+|+.|..++.....-++..|..|.+|.++.|..
T Consensus 234 ~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l 272 (419)
T KOG2120|consen 234 SNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFL 272 (419)
T ss_pred ccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhc
Confidence 456666666666555544444555666666666666543
|
|
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=98.18 E-value=5.6e-07 Score=81.19 Aligned_cols=226 Identities=17% Similarity=0.093 Sum_probs=121.5
Q ss_pred cccCCCccEEEcccCCCcccccccC-CCCCCCCCCccEEEEecCCCCCcCCch---hHHhhC-CCCCEEEEccCcCccee
Q 020456 45 MIGFCDIEYLQLSDFPCLKEIWHGQ-ALPVSFFNNLEELEVDDCTNMSSAIPA---NLLRCL-NNLRCLEVRNCDSIEEV 119 (326)
Q Consensus 45 ~~~~~~L~~L~l~~~~~l~~~~~~~-~l~~~~~~~L~~L~l~~c~~l~~~~~~---~~~~~l-~~L~~L~l~~c~~l~~l 119 (326)
+..+++|+.|++++++......... .+. .. ++|++|++++|. +.+.... ..+..+ ++|++|++++|..-...
T Consensus 77 l~~~~~L~~L~l~~~~~~~~~~~~~~~l~-~~-~~L~~L~ls~~~-~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~ 153 (319)
T cd00116 77 LTKGCGLQELDLSDNALGPDGCGVLESLL-RS-SSLQELKLNNNG-LGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGAS 153 (319)
T ss_pred HHhcCceeEEEccCCCCChhHHHHHHHHh-cc-CcccEEEeeCCc-cchHHHHHHHHHHHhCCCCceEEEcCCCcCCchH
Confidence 3448899999999877643211111 011 22 669999999985 4421111 124456 89999999998633110
Q ss_pred ccccccccccCcCCCCCCCccEEecCCCccccc--cccccccccccccccEEeEecCCCCCccCcchhhhccCCCCCCce
Q 020456 120 LHLEELNADKEHISPLFPKLSELRLIDLPKLKR--FCNFTENIIEMLMLWSLTIENCPNMETFVSNSVVHVTTDNKKPQK 197 (326)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~--~~~~~~~~~~~~~L~~L~l~~C~~l~~~~~~~~~~~~~~~~~L~~ 197 (326)
.. ... ......++|++|++.++. +.. +......+..+++|++|++++|. +.......+.......++|++
T Consensus 154 ~~--~~~----~~~~~~~~L~~L~l~~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~~~~~~~L~~ 225 (319)
T cd00116 154 CE--ALA----KALRANRDLKELNLANNG-IGDAGIRALAEGLKANCNLEVLDLNNNG-LTDEGASALAETLASLKSLEV 225 (319)
T ss_pred HH--HHH----HHHHhCCCcCEEECcCCC-CchHHHHHHHHHHHhCCCCCEEeccCCc-cChHHHHHHHHHhcccCCCCE
Confidence 00 000 001123589999998864 321 11000023445799999999984 443322222222222348999
Q ss_pred EEecccCcccceeccccccccCccccceeeecccceeecccCCCcceecCC---CccccCCcccEEEeccCCccc----c
Q 020456 198 LTLEENFLLADQVQPLFDEKVGEEVKGCIVFERMNYLTLDCLPSLTSFCLG---NYALEFPSLEQVVVRQCPKMK----I 270 (326)
Q Consensus 198 L~i~~~c~~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~---~~~~~~~~L~~L~i~~c~~l~----~ 270 (326)
|++ .+|.--. ..... .........++|++|++.+|. ++..... .....+++|+++.++++.--+ .
T Consensus 226 L~l-s~n~l~~-~~~~~-----l~~~~~~~~~~L~~L~l~~n~-i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~ 297 (319)
T cd00116 226 LNL-GDNNLTD-AGAAA-----LASALLSPNISLLTLSLSCND-ITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQL 297 (319)
T ss_pred Eec-CCCcCch-HHHHH-----HHHHHhccCCCceEEEccCCC-CCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHH
Confidence 999 8876322 10000 000000123789999999984 3211100 011145789999997765332 1
Q ss_pred ccCCCCCC-CCccEEEeccc
Q 020456 271 FSQGVLDT-PMLNKVNVTEE 289 (326)
Q Consensus 271 l~~~~~~~-~~L~~L~l~~c 289 (326)
+....... +.|+++++.+.
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~ 317 (319)
T cd00116 298 LAESLLEPGNELESLWVKDD 317 (319)
T ss_pred HHHHHhhcCCchhhcccCCC
Confidence 33333333 68888887653
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.15 E-value=3.9e-08 Score=84.89 Aligned_cols=142 Identities=16% Similarity=0.109 Sum_probs=80.1
Q ss_pred CCccEEecCCCccccccccccccccccccccEEeEecCCCCCccCcchhhhccCCCCCCceEEecccCcccceecccccc
Q 020456 137 PKLSELRLIDLPKLKRFCNFTENIIEMLMLWSLTIENCPNMETFVSNSVVHVTTDNKKPQKLTLEENFLLADQVQPLFDE 216 (326)
Q Consensus 137 ~~L~~L~l~~c~~L~~~~~~~~~~~~~~~L~~L~l~~C~~l~~~~~~~~~~~~~~~~~L~~L~i~~~c~~l~~~~~~~~~ 216 (326)
.+|+.|+|+.|.++++..... -+.+++.|++|+++.|.-.+......+++.- ++|+.|++ ++|..--... +
T Consensus 234 ~~L~~lnlsm~sG~t~n~~~l-l~~scs~L~~LNlsWc~l~~~~Vtv~V~his---e~l~~LNl-sG~rrnl~~s-h--- 304 (419)
T KOG2120|consen 234 SNLVRLNLSMCSGFTENALQL-LLSSCSRLDELNLSWCFLFTEKVTVAVAHIS---ETLTQLNL-SGYRRNLQKS-H--- 304 (419)
T ss_pred ccceeeccccccccchhHHHH-HHHhhhhHhhcCchHhhccchhhhHHHhhhc---hhhhhhhh-hhhHhhhhhh-H---
Confidence 367777777777766543321 3455677777777777555444222222222 26667777 6664321100 0
Q ss_pred ccCccccceeeecccceeecccCCCcceecCCCccccCCcccEEEeccCCcccc-ccCCCCCCCCccEEEeccccCC
Q 020456 217 KVGEEVKGCIVFERMNYLTLDCLPSLTSFCLGNYALEFPSLEQVVVRQCPKMKI-FSQGVLDTPMLNKVNVTEEEKD 292 (326)
Q Consensus 217 ~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~-l~~~~~~~~~L~~L~l~~c~~~ 292 (326)
...-...+|+|..|++++|..++.-.... ...++.|++|.++.|-.+.- ---.+...|+|.+|++.+|-..
T Consensus 305 ----~~tL~~rcp~l~~LDLSD~v~l~~~~~~~-~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~vsd 376 (419)
T KOG2120|consen 305 ----LSTLVRRCPNLVHLDLSDSVMLKNDCFQE-FFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCVSD 376 (419)
T ss_pred ----HHHHHHhCCceeeeccccccccCchHHHH-HHhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccccCc
Confidence 00002345778888888887766522211 23678888888888876532 0012335788888888888544
|
|
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.10 E-value=2e-07 Score=84.38 Aligned_cols=189 Identities=19% Similarity=0.186 Sum_probs=81.3
Q ss_pred CCCccEEEcccCCCcccccccCCCCCCCCCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccCcCcceecccccccc
Q 020456 48 FCDIEYLQLSDFPCLKEIWHGQALPVSFFNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNCDSIEEVLHLEELNA 127 (326)
Q Consensus 48 ~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~ 127 (326)
|++.+.|+++..-.. -|....-.+..+|+|+.|.++... +.....+.....+++|+.|.++.|.--. -
T Consensus 145 ~~~v~~LdLS~NL~~--nw~~v~~i~eqLp~Le~LNls~Nr-l~~~~~s~~~~~l~~lK~L~l~~CGls~-k-------- 212 (505)
T KOG3207|consen 145 LPNVRDLDLSRNLFH--NWFPVLKIAEQLPSLENLNLSSNR-LSNFISSNTTLLLSHLKQLVLNSCGLSW-K-------- 212 (505)
T ss_pred CCcceeecchhhhHH--hHHHHHHHHHhcccchhccccccc-ccCCccccchhhhhhhheEEeccCCCCH-H--------
Confidence 666666666532211 132210112456666666666542 2222222223345666666666654210 0
Q ss_pred ccCcCCCCCCCccEEecCCCccccccccccccccccccccEEeEecCCCCCccCcchhhhccCCCCCCceEEecccCccc
Q 020456 128 DKEHISPLFPKLSELRLIDLPKLKRFCNFTENIIEMLMLWSLTIENCPNMETFVSNSVVHVTTDNKKPQKLTLEENFLLA 207 (326)
Q Consensus 128 ~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~L~~L~l~~C~~l~~~~~~~~~~~~~~~~~L~~L~i~~~c~~l 207 (326)
....+...||+|+.|.+..-..+..... ....++.|++|++++- ++.++........++ .|+.|.+ ..|.-
T Consensus 213 ~V~~~~~~fPsl~~L~L~~N~~~~~~~~---~~~i~~~L~~LdLs~N-~li~~~~~~~~~~l~---~L~~Lnl-s~tgi- 283 (505)
T KOG3207|consen 213 DVQWILLTFPSLEVLYLEANEIILIKAT---STKILQTLQELDLSNN-NLIDFDQGYKVGTLP---GLNQLNL-SSTGI- 283 (505)
T ss_pred HHHHHHHhCCcHHHhhhhcccccceecc---hhhhhhHHhhccccCC-ccccccccccccccc---chhhhhc-cccCc-
Confidence 0011223456666666655432211111 2344566667777663 333442222223333 6666666 55542
Q ss_pred ceeccccccccCccccceeeecccceeecccCCCcceecCCCccccCCcccEEEe
Q 020456 208 DQVQPLFDEKVGEEVKGCIVFERMNYLTLDCLPSLTSFCLGNYALEFPSLEQVVV 262 (326)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i 262 (326)
.++...+ .+ .......|++|++|++.. .++..++.-..-...++|+.|.+
T Consensus 284 ~si~~~d---~~-s~~kt~~f~kL~~L~i~~-N~I~~w~sl~~l~~l~nlk~l~~ 333 (505)
T KOG3207|consen 284 ASIAEPD---VE-SLDKTHTFPKLEYLNISE-NNIRDWRSLNHLRTLENLKHLRI 333 (505)
T ss_pred chhcCCC---cc-chhhhcccccceeeeccc-Cccccccccchhhccchhhhhhc
Confidence 2221111 00 111134567777777665 33333332222223445555544
|
|
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.07 E-value=3.1e-07 Score=90.01 Aligned_cols=109 Identities=15% Similarity=0.260 Sum_probs=67.8
Q ss_pred cccccccccEEeEecCCCCCccCcchhhhccCCCCCCceEEecccCcccceeccccccccCccccceeeecccceeeccc
Q 020456 159 NIIEMLMLWSLTIENCPNMETFVSNSVVHVTTDNKKPQKLTLEENFLLADQVQPLFDEKVGEEVKGCIVFERMNYLTLDC 238 (326)
Q Consensus 159 ~~~~~~~L~~L~l~~C~~l~~~~~~~~~~~~~~~~~L~~L~i~~~c~~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~ 238 (326)
-+..+++|+-|++++ .++..+ |.+-...+. .|++|.+ ++ +.++.++.. +..++.|++|...+
T Consensus 378 ~l~~~~hLKVLhLsy-NrL~~f-pas~~~kle---~LeeL~L-SG-NkL~~Lp~t-----------va~~~~L~tL~ahs 439 (1081)
T KOG0618|consen 378 VLVNFKHLKVLHLSY-NRLNSF-PASKLRKLE---ELEELNL-SG-NKLTTLPDT-----------VANLGRLHTLRAHS 439 (1081)
T ss_pred hhccccceeeeeecc-cccccC-CHHHHhchH---HhHHHhc-cc-chhhhhhHH-----------HHhhhhhHHHhhcC
Confidence 455677888888876 456665 444333444 6777776 43 335444322 44556677776554
Q ss_pred CCCcceecCCCccccCCcccEEEeccCCcccc--ccCCCCCCCCccEEEeccccC
Q 020456 239 LPSLTSFCLGNYALEFPSLEQVVVRQCPKMKI--FSQGVLDTPMLNKVNVTEEEK 291 (326)
Q Consensus 239 c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~--l~~~~~~~~~L~~L~l~~c~~ 291 (326)
..+..+|. .. .++.|+.+++ +|..+.. +|... ..|.|++|+++++.+
T Consensus 440 -N~l~~fPe-~~--~l~qL~~lDl-S~N~L~~~~l~~~~-p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 440 -NQLLSFPE-LA--QLPQLKVLDL-SCNNLSEVTLPEAL-PSPNLKYLDLSGNTR 488 (1081)
T ss_pred -Cceeechh-hh--hcCcceEEec-ccchhhhhhhhhhC-CCcccceeeccCCcc
Confidence 55677773 22 6788888888 6777765 44433 238999999988754
|
|
| >KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.06 E-value=3.3e-07 Score=87.40 Aligned_cols=139 Identities=19% Similarity=0.241 Sum_probs=68.1
Q ss_pred CCCccEEEcccCCCcccccccCCCCCCCCCCccEEEEecC-CCCCcCC--chhHHhhCCCCCEEEEccCcCcceeccccc
Q 020456 48 FCDIEYLQLSDFPCLKEIWHGQALPVSFFNNLEELEVDDC-TNMSSAI--PANLLRCLNNLRCLEVRNCDSIEEVLHLEE 124 (326)
Q Consensus 48 ~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~L~~L~l~~c-~~l~~~~--~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~ 124 (326)
+++|+.|.+.+|..+...+... + ...+++|+.|++..| ....... .......+++|+.|++..|..+.+. +
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~-~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~----~ 260 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDA-L-ALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDI----G 260 (482)
T ss_pred CchhhHhhhcccccCChhhHHH-H-HhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCch----h
Confidence 5666666666666655422111 1 134566677766662 2222211 1123445566666666666543322 1
Q ss_pred cccccCcCCCCCCCccEEecCCCccccccccccccccccccccEEeEecCCCCCccCcchhhhccCCCCCCceEEe
Q 020456 125 LNADKEHISPLFPKLSELRLIDLPKLKRFCNFTENIIEMLMLWSLTIENCPNMETFVSNSVVHVTTDNKKPQKLTL 200 (326)
Q Consensus 125 ~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~L~~L~l~~C~~l~~~~~~~~~~~~~~~~~L~~L~i 200 (326)
+. .+....|+|+.|.+..|..++.-.... ....+++|++|++++|..+++.....+...++ +|+.|.+
T Consensus 261 l~----~l~~~c~~L~~L~l~~c~~lt~~gl~~-i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~---~l~~l~~ 328 (482)
T KOG1947|consen 261 LS----ALASRCPNLETLSLSNCSNLTDEGLVS-IAERCPSLRELDLSGCHGLTDSGLEALLKNCP---NLRELKL 328 (482)
T ss_pred HH----HHHhhCCCcceEccCCCCccchhHHHH-HHHhcCcccEEeeecCccchHHHHHHHHHhCc---chhhhhh
Confidence 00 011124577777766666543111000 23445667777777777765543334444454 5555544
|
|
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.94 E-value=7.3e-08 Score=86.34 Aligned_cols=210 Identities=14% Similarity=0.187 Sum_probs=119.7
Q ss_pred hhhhhhhhccccCCCccEEEcccCCCcccccccCCCCCCCCCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccCcC
Q 020456 36 STIQKCYEEMIGFCDIEYLQLSDFPCLKEIWHGQALPVSFFNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNCDS 115 (326)
Q Consensus 36 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~ 115 (326)
+......+++..++.|.+|.+.+... ...+... +.+..+++|.++.. ++..++.. +..+.+|++++++...
T Consensus 55 N~l~~l~~dl~nL~~l~vl~~~~n~l-~~lp~ai----g~l~~l~~l~vs~n-~ls~lp~~--i~s~~~l~~l~~s~n~- 125 (565)
T KOG0472|consen 55 NDLEVLREDLKNLACLTVLNVHDNKL-SQLPAAI----GELEALKSLNVSHN-KLSELPEQ--IGSLISLVKLDCSSNE- 125 (565)
T ss_pred CchhhccHhhhcccceeEEEeccchh-hhCCHHH----HHHHHHHHhhcccc-hHhhccHH--Hhhhhhhhhhhccccc-
Confidence 34455666677788888888876443 3333332 56677888888775 45555554 7778888888877643
Q ss_pred cceeccccccccccCcCCCCCCCccEEecCCCccccccccccccccccccccEEeEecCCCCCccCcchhhhccCCCCCC
Q 020456 116 IEEVLHLEELNADKEHISPLFPKLSELRLIDLPKLKRFCNFTENIIEMLMLWSLTIENCPNMETFVSNSVVHVTTDNKKP 195 (326)
Q Consensus 116 l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~L~~L~l~~C~~l~~~~~~~~~~~~~~~~~L 195 (326)
+.++++..+.. -.|..++..+ .++.++|. .+..+.+|..+.+.+ .+++.+++..++ +. +|
T Consensus 126 ~~el~~~i~~~----------~~l~dl~~~~-N~i~slp~---~~~~~~~l~~l~~~~-n~l~~l~~~~i~--m~---~L 185 (565)
T KOG0472|consen 126 LKELPDSIGRL----------LDLEDLDATN-NQISSLPE---DMVNLSKLSKLDLEG-NKLKALPENHIA--MK---RL 185 (565)
T ss_pred eeecCchHHHH----------hhhhhhhccc-cccccCch---HHHHHHHHHHhhccc-cchhhCCHHHHH--HH---HH
Confidence 33333322211 1233333222 33444454 455566666666665 356666444443 33 66
Q ss_pred ceEEecccCcc-cceeccccccccCccccceeeecccceee-----------cccCCCcceecCCCcc---------ccC
Q 020456 196 QKLTLEENFLL-ADQVQPLFDEKVGEEVKGCIVFERMNYLT-----------LDCLPSLTSFCLGNYA---------LEF 254 (326)
Q Consensus 196 ~~L~i~~~c~~-l~~~~~~~~~~~~~~~~~~~~l~~L~~L~-----------l~~c~~l~~~~~~~~~---------~~~ 254 (326)
++|+. |.+ ++.+++. ++.+.+|..|+ +.+|..+.+++.+... .++
T Consensus 186 ~~ld~---~~N~L~tlP~~-----------lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L 251 (565)
T KOG0472|consen 186 KHLDC---NSNLLETLPPE-----------LGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHL 251 (565)
T ss_pred Hhccc---chhhhhcCChh-----------hcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHHhhHHHHhccc
Confidence 66553 333 3333222 33344444443 3344444444333211 256
Q ss_pred CcccEEEeccCCccccccCCCCCCCCccEEEeccc
Q 020456 255 PSLEQVVVRQCPKMKIFSQGVLDTPMLNKVNVTEE 289 (326)
Q Consensus 255 ~~L~~L~i~~c~~l~~l~~~~~~~~~L~~L~l~~c 289 (326)
+++..|++++ .+++.+|.+++.+.+|++|++++.
T Consensus 252 ~~l~vLDLRd-Nklke~Pde~clLrsL~rLDlSNN 285 (565)
T KOG0472|consen 252 NSLLVLDLRD-NKLKEVPDEICLLRSLERLDLSNN 285 (565)
T ss_pred ccceeeeccc-cccccCchHHHHhhhhhhhcccCC
Confidence 7888888865 578889998888889999999876
|
|
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.89 E-value=2.7e-05 Score=79.05 Aligned_cols=221 Identities=14% Similarity=0.104 Sum_probs=119.4
Q ss_pred CCCccEEEcccCCC-cccccccCCCCCCCCCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccCcCcceeccccccc
Q 020456 48 FCDIEYLQLSDFPC-LKEIWHGQALPVSFFNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNCDSIEEVLHLEELN 126 (326)
Q Consensus 48 ~~~L~~L~l~~~~~-l~~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~ 126 (326)
++.|++|-+.+... +..+.... ...++.|+.|++++|..+..+|.. ++.+-+||+|++++.. +..+|..-+
T Consensus 544 ~~~L~tLll~~n~~~l~~is~~f---f~~m~~LrVLDLs~~~~l~~LP~~--I~~Li~LryL~L~~t~-I~~LP~~l~-- 615 (889)
T KOG4658|consen 544 NPKLRTLLLQRNSDWLLEISGEF---FRSLPLLRVLDLSGNSSLSKLPSS--IGELVHLRYLDLSDTG-ISHLPSGLG-- 615 (889)
T ss_pred CCccceEEEeecchhhhhcCHHH---HhhCcceEEEECCCCCccCcCChH--HhhhhhhhcccccCCC-ccccchHHH--
Confidence 66788888776542 23222221 146788999999998888777654 8889999999998743 444433211
Q ss_pred cccCcCCCCCCCccEEecCCCccccccccccccccccccccEEeEecCC-CCCccCcchhhhccCCCCCCceEEecccCc
Q 020456 127 ADKEHISPLFPKLSELRLIDLPKLKRFCNFTENIIEMLMLWSLTIENCP-NMETFVSNSVVHVTTDNKKPQKLTLEENFL 205 (326)
Q Consensus 127 ~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~L~~L~l~~C~-~l~~~~~~~~~~~~~~~~~L~~L~i~~~c~ 205 (326)
.+.+|.+|++.....+..++. ....+++|+.|.+.... ..+.. ...-...+. +|+.+.+ ..+.
T Consensus 616 --------~Lk~L~~Lnl~~~~~l~~~~~---i~~~L~~Lr~L~l~~s~~~~~~~-~l~el~~Le---~L~~ls~-~~~s 679 (889)
T KOG4658|consen 616 --------NLKKLIYLNLEVTGRLESIPG---ILLELQSLRVLRLPRSALSNDKL-LLKELENLE---HLENLSI-TISS 679 (889)
T ss_pred --------HHHhhheeccccccccccccc---hhhhcccccEEEeeccccccchh-hHHhhhccc---chhhhee-ecch
Confidence 233677778877777776643 34447888888876543 11111 111111222 3333333 2222
Q ss_pred c--cceeccc----------c-cccc-CccccceeeecccceeecccCCCcceecCC---Ccccc-CCcccEEEeccCCc
Q 020456 206 L--ADQVQPL----------F-DEKV-GEEVKGCIVFERMNYLTLDCLPSLTSFCLG---NYALE-FPSLEQVVVRQCPK 267 (326)
Q Consensus 206 ~--l~~~~~~----------~-~~~~-~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~---~~~~~-~~~L~~L~i~~c~~ 267 (326)
. +..+... . .+.. -........+.+|+.|.+.+|...+..... ..... ++++.++.+..|..
T Consensus 680 ~~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~ 759 (889)
T KOG4658|consen 680 VLLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHM 759 (889)
T ss_pred hHhHhhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhcccc
Confidence 2 0000000 0 0000 001111345567888888888765432211 11112 56777777777777
Q ss_pred cccccCCCCCCCCccEEEeccccCCC
Q 020456 268 MKIFSQGVLDTPMLNKVNVTEEEKDD 293 (326)
Q Consensus 268 l~~l~~~~~~~~~L~~L~l~~c~~~~ 293 (326)
.+.... ....|+|+.+.+..|..+.
T Consensus 760 ~r~l~~-~~f~~~L~~l~l~~~~~~e 784 (889)
T KOG4658|consen 760 LRDLTW-LLFAPHLTSLSLVSCRLLE 784 (889)
T ss_pred ccccch-hhccCcccEEEEecccccc
Confidence 764332 2246788888888875553
|
|
| >KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.86 E-value=1.1e-06 Score=83.90 Aligned_cols=123 Identities=18% Similarity=0.128 Sum_probs=86.7
Q ss_pred CCCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccC-cCcceeccccccccccCcCCCCCCCccEEecCCCcccccc
Q 020456 75 FFNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNC-DSIEEVLHLEELNADKEHISPLFPKLSELRLIDLPKLKRF 153 (326)
Q Consensus 75 ~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c-~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~ 153 (326)
.+++|++|.+.+|..++..........+++|++|++.+| ...... +.. ........++|+.|++..|..+...
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~----~~~--~~~~~~~~~~L~~l~l~~~~~isd~ 259 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLS----PLL--LLLLLSICRKLKSLDLSGCGLVTDI 259 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccc----hhH--hhhhhhhcCCcCccchhhhhccCch
Confidence 479999999999998887543445788999999999985 222111 000 0002223468999999988865432
Q ss_pred ccccccccccccccEEeEecCCCCCccCcchhhhccCCCCCCceEEecccCcccc
Q 020456 154 CNFTENIIEMLMLWSLTIENCPNMETFVSNSVVHVTTDNKKPQKLTLEENFLLAD 208 (326)
Q Consensus 154 ~~~~~~~~~~~~L~~L~l~~C~~l~~~~~~~~~~~~~~~~~L~~L~i~~~c~~l~ 208 (326)
-... -...+++|+.|.+.+|..+++.....++..++ +|++|++ ..|..+.
T Consensus 260 ~l~~-l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~---~L~~L~l-~~c~~~~ 309 (482)
T KOG1947|consen 260 GLSA-LASRCPNLETLSLSNCSNLTDEGLVSIAERCP---SLRELDL-SGCHGLT 309 (482)
T ss_pred hHHH-HHhhCCCcceEccCCCCccchhHHHHHHHhcC---cccEEee-ecCccch
Confidence 1100 11237899999999999888877777888887 9999999 9999874
|
|
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.81 E-value=7.7e-07 Score=71.12 Aligned_cols=38 Identities=24% Similarity=0.271 Sum_probs=17.2
Q ss_pred CccEEecCCCccccccccccccccccccccEEeEecCCCCCcc
Q 020456 138 KLSELRLIDLPKLKRFCNFTENIIEMLMLWSLTIENCPNMETF 180 (326)
Q Consensus 138 ~L~~L~l~~c~~L~~~~~~~~~~~~~~~L~~L~l~~C~~l~~~ 180 (326)
+|+.|.+.+- .+-++|. .++.+++|++|+|.+ .+++.+
T Consensus 151 ~lqil~lrdn-dll~lpk---eig~lt~lrelhiqg-nrl~vl 188 (264)
T KOG0617|consen 151 NLQILSLRDN-DLLSLPK---EIGDLTRLRELHIQG-NRLTVL 188 (264)
T ss_pred ceeEEeeccC-chhhCcH---HHHHHHHHHHHhccc-ceeeec
Confidence 4444444442 2333333 444555555555554 234443
|
|
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.76 E-value=2.7e-06 Score=83.63 Aligned_cols=176 Identities=15% Similarity=0.157 Sum_probs=88.8
Q ss_pred CCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccCcCcceeccccccccccCcCCCCCCCccEEecCCCccccccccc
Q 020456 77 NNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNCDSIEEVLHLEELNADKEHISPLFPKLSELRLIDLPKLKRFCNF 156 (326)
Q Consensus 77 ~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~ 156 (326)
.+|++++|+.. ++..++ .++..+++|+.+.+.... +..++...- ...+|+.|.+..+ .+++++.
T Consensus 241 ~nl~~~dis~n-~l~~lp--~wi~~~~nle~l~~n~N~-l~~lp~ri~----------~~~~L~~l~~~~n-el~yip~- 304 (1081)
T KOG0618|consen 241 LNLQYLDISHN-NLSNLP--EWIGACANLEALNANHNR-LVALPLRIS----------RITSLVSLSAAYN-ELEYIPP- 304 (1081)
T ss_pred ccceeeecchh-hhhcch--HHHHhcccceEecccchh-HHhhHHHHh----------hhhhHHHHHhhhh-hhhhCCC-
Confidence 46777777664 344443 457777777777766532 332211110 1136666666654 3666665
Q ss_pred cccccccccccEEeEecCCCCCccCcchhhhccCCCCCCceEEecccCcccceeccccccccCccccceeeecccceeec
Q 020456 157 TENIIEMLMLWSLTIENCPNMETFVSNSVVHVTTDNKKPQKLTLEENFLLADQVQPLFDEKVGEEVKGCIVFERMNYLTL 236 (326)
Q Consensus 157 ~~~~~~~~~L~~L~l~~C~~l~~~~~~~~~~~~~~~~~L~~L~i~~~c~~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l 236 (326)
....++.|++|++.. .++..++......... +|+.|+. .|..+......+ ...++.|+.|.+
T Consensus 305 --~le~~~sL~tLdL~~-N~L~~lp~~~l~v~~~---~l~~ln~--s~n~l~~lp~~~----------e~~~~~Lq~Lyl 366 (1081)
T KOG0618|consen 305 --FLEGLKSLRTLDLQS-NNLPSLPDNFLAVLNA---SLNTLNV--SSNKLSTLPSYE----------ENNHAALQELYL 366 (1081)
T ss_pred --cccccceeeeeeehh-ccccccchHHHhhhhH---HHHHHhh--hhcccccccccc----------chhhHHHHHHHH
Confidence 456678889998865 4666664422222111 3555554 444444433222 113344555555
Q ss_pred ccCCCcceecCCCccccCCcccEEEeccCCccccccC-CCCCCCCccEEEeccc
Q 020456 237 DCLPSLTSFCLGNYALEFPSLEQVVVRQCPKMKIFSQ-GVLDTPMLNKVNVTEE 289 (326)
Q Consensus 237 ~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~-~~~~~~~L~~L~l~~c 289 (326)
.+ ..|++-...... .++.|+.|++.+ ..+..||. ....++.|++|+++++
T Consensus 367 an-N~Ltd~c~p~l~-~~~hLKVLhLsy-NrL~~fpas~~~kle~LeeL~LSGN 417 (1081)
T KOG0618|consen 367 AN-NHLTDSCFPVLV-NFKHLKVLHLSY-NRLNSFPASKLRKLEELEELNLSGN 417 (1081)
T ss_pred hc-Ccccccchhhhc-cccceeeeeecc-cccccCCHHHHhchHHhHHHhcccc
Confidence 54 223322221111 445566665533 34444554 2334555666666554
|
|
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00014 Score=59.61 Aligned_cols=38 Identities=18% Similarity=0.078 Sum_probs=13.7
Q ss_pred ccccccccEEeEecCCCCCcc-CcchhhhccCCCCCCceEEe
Q 020456 160 IIEMLMLWSLTIENCPNMETF-VSNSVVHVTTDNKKPQKLTL 200 (326)
Q Consensus 160 ~~~~~~L~~L~l~~C~~l~~~-~~~~~~~~~~~~~~L~~L~i 200 (326)
+..+++|+.|++.+.|--..- ....+...++ +|+.|+-
T Consensus 109 L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP---~Lk~LD~ 147 (175)
T PF14580_consen 109 LSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLP---SLKVLDG 147 (175)
T ss_dssp GGG-TT--EEE-TT-GGGGSTTHHHHHHHH-T---T-SEETT
T ss_pred HHcCCCcceeeccCCcccchhhHHHHHHHHcC---hhheeCC
Confidence 344666666666654321110 0122333444 7777664
|
|
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.54 E-value=1.1e-05 Score=64.72 Aligned_cols=84 Identities=13% Similarity=0.088 Sum_probs=40.2
Q ss_pred eecccceeecccCCCcceecCCCccccCCcccEEEeccCCccccccCCCCCCCCccEEEeccccCCCCccccccCchHHH
Q 020456 227 VFERMNYLTLDCLPSLTSFCLGNYALEFPSLEQVVVRQCPKMKIFSQGVLDTPMLNKVNVTEEEKDDDDEGCWEGNLNDT 306 (326)
Q Consensus 227 ~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~ 306 (326)
.||.|+.|++.+ .++.+-..-+....+..|+-|++.+ ..++.+|..++.+++|+-|.+.+.+-+ .++...+.+..
T Consensus 100 s~p~levldlty-nnl~e~~lpgnff~m~tlralyl~d-ndfe~lp~dvg~lt~lqil~lrdndll---~lpkeig~lt~ 174 (264)
T KOG0617|consen 100 SFPALEVLDLTY-NNLNENSLPGNFFYMTTLRALYLGD-NDFEILPPDVGKLTNLQILSLRDNDLL---SLPKEIGDLTR 174 (264)
T ss_pred CCchhhhhhccc-cccccccCCcchhHHHHHHHHHhcC-CCcccCChhhhhhcceeEEeeccCchh---hCcHHHHHHHH
Confidence 455666666655 3333222222222344555555532 345555655555566666655544222 23334444556
Q ss_pred HHHHHHhhh
Q 020456 307 IKQLFNEIV 315 (326)
Q Consensus 307 l~~l~i~~~ 315 (326)
|+.++|+|.
T Consensus 175 lrelhiqgn 183 (264)
T KOG0617|consen 175 LRELHIQGN 183 (264)
T ss_pred HHHHhcccc
Confidence 666666553
|
|
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00012 Score=48.87 Aligned_cols=59 Identities=36% Similarity=0.432 Sum_probs=28.5
Q ss_pred CCccEEEcccCCCcccccccCCCCCCCCCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccC
Q 020456 49 CDIEYLQLSDFPCLKEIWHGQALPVSFFNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNC 113 (326)
Q Consensus 49 ~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c 113 (326)
|+|++|++.++ .+..++... ...+++|++|+++++ +++.+.+. .+.++++|++|+++++
T Consensus 1 p~L~~L~l~~n-~l~~i~~~~---f~~l~~L~~L~l~~N-~l~~i~~~-~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNN-KLTEIPPDS---FSNLPNLETLDLSNN-NLTSIPPD-AFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSS-TESEECTTT---TTTGTTESEEEETSS-SESEEETT-TTTTSTTESEEEETSS
T ss_pred CcCcEEECCCC-CCCccCHHH---HcCCCCCCEeEccCC-ccCccCHH-HHcCCCCCCEEeCcCC
Confidence 34555555554 344443322 134555666666544 24333322 2455555666655554
|
... |
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00033 Score=46.68 Aligned_cols=58 Identities=16% Similarity=0.294 Sum_probs=42.9
Q ss_pred cccceeecccCCCcceecCCCccccCCcccEEEeccCCccccccC-CCCCCCCccEEEeccc
Q 020456 229 ERMNYLTLDCLPSLTSFCLGNYALEFPSLEQVVVRQCPKMKIFSQ-GVLDTPMLNKVNVTEE 289 (326)
Q Consensus 229 ~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~-~~~~~~~L~~L~l~~c 289 (326)
|+|++|++.++ .++.++..... .+++|++|+++ ...++.++. .+..+++|++|++++|
T Consensus 1 p~L~~L~l~~n-~l~~i~~~~f~-~l~~L~~L~l~-~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNN-KLTEIPPDSFS-NLPNLETLDLS-NNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSS-TESEECTTTTT-TGTTESEEEET-SSSESEEETTTTTTSTTESEEEETSS
T ss_pred CcCcEEECCCC-CCCccCHHHHc-CCCCCCEeEcc-CCccCccCHHHHcCCCCCCEEeCcCC
Confidence 46778888886 77778765543 68888888886 445666665 5567888999988877
|
... |
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.34 E-value=2.1e-06 Score=77.20 Aligned_cols=82 Identities=11% Similarity=0.015 Sum_probs=60.5
Q ss_pred eeeecccceeecccCCCcceecCCCccccCCcccEEEeccCCccccccCCCCCCCCccEEEeccccCCCCccccccCchH
Q 020456 225 CIVFERMNYLTLDCLPSLTSFCLGNYALEFPSLEQVVVRQCPKMKIFSQGVLDTPMLNKVNVTEEEKDDDDEGCWEGNLN 304 (326)
Q Consensus 225 ~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~ 304 (326)
...++++..|++++ .+++++|.+.+ -+.+|.+|++++ ..+..+|..++++ .|+.|.+.+.+-.+..+.-...+..
T Consensus 248 ~~~L~~l~vLDLRd-Nklke~Pde~c--lLrsL~rLDlSN-N~is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~ 322 (565)
T KOG0472|consen 248 LKHLNSLLVLDLRD-NKLKEVPDEIC--LLRSLERLDLSN-NDISSLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQ 322 (565)
T ss_pred hcccccceeeeccc-cccccCchHHH--HhhhhhhhcccC-CccccCCcccccc-eeeehhhcCCchHHHHHHHHcccHH
Confidence 45678899999998 78999998776 677899999955 5788899888888 9999999998766654332233334
Q ss_pred HHHHHHH
Q 020456 305 DTIKQLF 311 (326)
Q Consensus 305 ~~l~~l~ 311 (326)
.-||.+.
T Consensus 323 ~vLKyLr 329 (565)
T KOG0472|consen 323 EVLKYLR 329 (565)
T ss_pred HHHHHHH
Confidence 4455543
|
|
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.00027 Score=61.59 Aligned_cols=64 Identities=20% Similarity=0.177 Sum_probs=38.4
Q ss_pred cccCCCccEEEcccCCCcccccccCCCCCCCCCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccC
Q 020456 45 MIGFCDIEYLQLSDFPCLKEIWHGQALPVSFFNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNC 113 (326)
Q Consensus 45 ~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c 113 (326)
+..+|.|++|+++..+--..|- . +| .-..||+.|.+++. .+.-....++...+|.+++|++++.
T Consensus 93 le~lP~l~~LNls~N~L~s~I~--~-lp-~p~~nl~~lVLNgT-~L~w~~~~s~l~~lP~vtelHmS~N 156 (418)
T KOG2982|consen 93 LEQLPALTTLNLSCNSLSSDIK--S-LP-LPLKNLRVLVLNGT-GLSWTQSTSSLDDLPKVTELHMSDN 156 (418)
T ss_pred HhcCccceEeeccCCcCCCccc--c-Cc-ccccceEEEEEcCC-CCChhhhhhhhhcchhhhhhhhccc
Confidence 4458888888887433222211 1 22 23468888888774 4544434445667777888877764
|
|
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.0013 Score=59.54 Aligned_cols=66 Identities=18% Similarity=0.245 Sum_probs=40.2
Q ss_pred CCccEEEcccCCCcccccccCCCCCCCCCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccCcCcceec
Q 020456 49 CDIEYLQLSDFPCLKEIWHGQALPVSFFNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNCDSIEEVL 120 (326)
Q Consensus 49 ~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~ 120 (326)
+.-.++.+. -.+++.|+++. .+.+.+||+|+++.. +++.+.|.. ++.+++|-.|.+.+...+.+++
T Consensus 67 ~~tveirLd-qN~I~~iP~~a---F~~l~~LRrLdLS~N-~Is~I~p~A-F~GL~~l~~Lvlyg~NkI~~l~ 132 (498)
T KOG4237|consen 67 PETVEIRLD-QNQISSIPPGA---FKTLHRLRRLDLSKN-NISFIAPDA-FKGLASLLSLVLYGNNKITDLP 132 (498)
T ss_pred CcceEEEec-cCCcccCChhh---ccchhhhceeccccc-chhhcChHh-hhhhHhhhHHHhhcCCchhhhh
Confidence 445556665 34456666554 256777788888775 455555543 6667777777666655565553
|
|
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.0048 Score=50.53 Aligned_cols=35 Identities=17% Similarity=0.171 Sum_probs=9.4
Q ss_pred cccccccEEeEecCCCCCccCcchhhhccCCCCCCceEEe
Q 020456 161 IEMLMLWSLTIENCPNMETFVSNSVVHVTTDNKKPQKLTL 200 (326)
Q Consensus 161 ~~~~~L~~L~l~~C~~l~~~~~~~~~~~~~~~~~L~~L~i 200 (326)
..+++|+.|++++ ..++++. ..+...++ +|++|++
T Consensus 61 ~~L~~L~~L~L~~-N~I~~i~-~~l~~~lp---~L~~L~L 95 (175)
T PF14580_consen 61 PGLPRLKTLDLSN-NRISSIS-EGLDKNLP---NLQELYL 95 (175)
T ss_dssp ---TT--EEE--S-S---S-C-HHHHHH-T---T--EEE-
T ss_pred cChhhhhhcccCC-CCCCccc-cchHHhCC---cCCEEEC
Confidence 3456666666654 3455542 12222344 6666666
|
|
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.0013 Score=65.41 Aligned_cols=114 Identities=16% Similarity=0.223 Sum_probs=60.9
Q ss_pred CCCccEEEcccCCCcccccccCCCCCCCCCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccCcCcceecccccccc
Q 020456 48 FCDIEYLQLSDFPCLKEIWHGQALPVSFFNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNCDSIEEVLHLEELNA 127 (326)
Q Consensus 48 ~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~ 127 (326)
-.+|+.|+|+|...+..-|... .. .-||+|++|.+.+-.-..+. ......++|+|..|+|+++. +..+ .|..
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~k-ig-~~LPsL~sL~i~~~~~~~~d-F~~lc~sFpNL~sLDIS~Tn-I~nl---~GIS- 192 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKK-IG-TMLPSLRSLVISGRQFDNDD-FSQLCASFPNLRSLDISGTN-ISNL---SGIS- 192 (699)
T ss_pred HHhhhhcCccccchhhccHHHH-Hh-hhCcccceEEecCceecchh-HHHHhhccCccceeecCCCC-ccCc---HHHh-
Confidence 4567778887766665556443 21 45788888887774322222 22346677888888887753 3332 1211
Q ss_pred ccCcCCCCCCCccEEecCCCccccccccccccccccccccEEeEecCCCCC
Q 020456 128 DKEHISPLFPKLSELRLIDLPKLKRFCNFTENIIEMLMLWSLTIENCPNME 178 (326)
Q Consensus 128 ~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~L~~L~l~~C~~l~ 178 (326)
.+.+|+.|.+.++.--.... . ..+-.+++|+.|+|++-....
T Consensus 193 -------~LknLq~L~mrnLe~e~~~~-l-~~LF~L~~L~vLDIS~~~~~~ 234 (699)
T KOG3665|consen 193 -------RLKNLQVLSMRNLEFESYQD-L-IDLFNLKKLRVLDISRDKNND 234 (699)
T ss_pred -------ccccHHHHhccCCCCCchhh-H-HHHhcccCCCeeecccccccc
Confidence 23456666555543211000 0 033456777777777644433
|
|
| >KOG3864 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.00089 Score=55.18 Aligned_cols=74 Identities=20% Similarity=0.305 Sum_probs=51.3
Q ss_pred hhhccccCCCccEEEcccCCCcccccccCCCCCCCCCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccCcCcc
Q 020456 41 CYEEMIGFCDIEYLQLSDFPCLKEIWHGQALPVSFFNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNCDSIE 117 (326)
Q Consensus 41 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~ 117 (326)
-++.+..++.++.|.+.+|..+.+...+. +. +-+++|+.|+|++|+++++..... +.++++|+.|.|.+.+.+.
T Consensus 117 Gle~L~~l~~i~~l~l~~ck~~dD~~L~~-l~-~~~~~L~~L~lsgC~rIT~~GL~~-L~~lknLr~L~l~~l~~v~ 190 (221)
T KOG3864|consen 117 GLEHLRDLRSIKSLSLANCKYFDDWCLER-LG-GLAPSLQDLDLSGCPRITDGGLAC-LLKLKNLRRLHLYDLPYVA 190 (221)
T ss_pred HHHHHhccchhhhheeccccchhhHHHHH-hc-ccccchheeeccCCCeechhHHHH-HHHhhhhHHHHhcCchhhh
Confidence 34556667888888888888877622222 22 356888888888888887765543 6778888888887766543
|
|
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.0099 Score=36.66 Aligned_cols=39 Identities=33% Similarity=0.555 Sum_probs=26.2
Q ss_pred CCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccCcCccee
Q 020456 77 NNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNCDSIEEV 119 (326)
Q Consensus 77 ~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l 119 (326)
++|++|+++++ +++++++. +++|++|+.|+++++. ++++
T Consensus 1 ~~L~~L~l~~N-~i~~l~~~--l~~l~~L~~L~l~~N~-i~~i 39 (44)
T PF12799_consen 1 KNLEELDLSNN-QITDLPPE--LSNLPNLETLNLSNNP-ISDI 39 (44)
T ss_dssp TT-SEEEETSS-S-SSHGGH--GTTCTTSSEEEETSSC-CSBE
T ss_pred CcceEEEccCC-CCcccCch--HhCCCCCCEEEecCCC-CCCC
Confidence 47888888887 46666553 6788888888888864 4433
|
... |
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.0046 Score=61.53 Aligned_cols=36 Identities=25% Similarity=0.417 Sum_probs=17.4
Q ss_pred CCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEcc
Q 020456 77 NNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRN 112 (326)
Q Consensus 77 ~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~ 112 (326)
.+|++|+|++-..+..-.+...-..||+|+.|.+.+
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~ 157 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISG 157 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecC
Confidence 355566655544333333333333455566655554
|
|
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.32 E-value=0.053 Score=53.76 Aligned_cols=107 Identities=10% Similarity=0.077 Sum_probs=64.5
Q ss_pred ccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccCcCcceeccccccccccCcCCCCCCCccEEecCCCccccccccccc
Q 020456 79 LEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNCDSIEEVLHLEELNADKEHISPLFPKLSELRLIDLPKLKRFCNFTE 158 (326)
Q Consensus 79 L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~ 158 (326)
++.|++.++. +....+.. +.++++|+.|+++++.....++... ..+++|+.|+++++.--..+|.
T Consensus 420 v~~L~L~~n~-L~g~ip~~-i~~L~~L~~L~Ls~N~l~g~iP~~~----------~~l~~L~~LdLs~N~lsg~iP~--- 484 (623)
T PLN03150 420 IDGLGLDNQG-LRGFIPND-ISKLRHLQSINLSGNSIRGNIPPSL----------GSITSLEVLDLSYNSFNGSIPE--- 484 (623)
T ss_pred EEEEECCCCC-ccccCCHH-HhCCCCCCEEECCCCcccCcCChHH----------hCCCCCCEEECCCCCCCCCCch---
Confidence 6777887764 55444443 7788889999888865332332211 1345888888887654445554
Q ss_pred cccccccccEEeEecCCCCCccCcchhhhccCCCCCCceEEecccCc
Q 020456 159 NIIEMLMLWSLTIENCPNMETFVSNSVVHVTTDNKKPQKLTLEENFL 205 (326)
Q Consensus 159 ~~~~~~~L~~L~l~~C~~l~~~~~~~~~~~~~~~~~L~~L~i~~~c~ 205 (326)
.+..+++|+.|+++++.--..+ |..+..... ++..+.+ .+..
T Consensus 485 ~l~~L~~L~~L~Ls~N~l~g~i-P~~l~~~~~---~~~~l~~-~~N~ 526 (623)
T PLN03150 485 SLGQLTSLRILNLNGNSLSGRV-PAALGGRLL---HRASFNF-TDNA 526 (623)
T ss_pred HHhcCCCCCEEECcCCcccccC-ChHHhhccc---cCceEEe-cCCc
Confidence 5677888888888876432233 444433223 5556666 5444
|
|
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.13 E-value=0.00054 Score=60.85 Aligned_cols=232 Identities=16% Similarity=0.105 Sum_probs=119.0
Q ss_pred cccCCCccEEEcccCCCcc---cccccCC-C--CCCCCCCccEEEEecCCCCCcCCc--hhHHhhCCCCCEEEEccCcCc
Q 020456 45 MIGFCDIEYLQLSDFPCLK---EIWHGQA-L--PVSFFNNLEELEVDDCTNMSSAIP--ANLLRCLNNLRCLEVRNCDSI 116 (326)
Q Consensus 45 ~~~~~~L~~L~l~~~~~l~---~~~~~~~-l--~~~~~~~L~~L~l~~c~~l~~~~~--~~~~~~l~~L~~L~l~~c~~l 116 (326)
+...++|+..+++++.--+ +++.... + .-..+|+|++|++++...-....+ ..++.++..|++|.+.+|..-
T Consensus 54 L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg 133 (382)
T KOG1909|consen 54 LASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLG 133 (382)
T ss_pred HhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCC
Confidence 4446688888887653211 2221110 0 002357899999988643222211 134667889999999888532
Q ss_pred ceecccccccc-----ccCcCCCCCCCccEEecCCCcccccccccc--ccccccccccEEeEecCCCCCccCcchh---h
Q 020456 117 EEVLHLEELNA-----DKEHISPLFPKLSELRLIDLPKLKRFCNFT--ENIIEMLMLWSLTIENCPNMETFVSNSV---V 186 (326)
Q Consensus 117 ~~l~~~~~~~~-----~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~--~~~~~~~~L~~L~l~~C~~l~~~~~~~~---~ 186 (326)
..- ...+.. ....-....|.|+.+..+. .+++...... ..+...+.|+.+.++.- .+..-....+ +
T Consensus 134 ~~a--g~~l~~al~~l~~~kk~~~~~~Lrv~i~~r-Nrlen~ga~~~A~~~~~~~~leevr~~qN-~I~~eG~~al~eal 209 (382)
T KOG1909|consen 134 PEA--GGRLGRALFELAVNKKAASKPKLRVFICGR-NRLENGGATALAEAFQSHPTLEEVRLSQN-GIRPEGVTALAEAL 209 (382)
T ss_pred hhH--HHHHHHHHHHHHHHhccCCCcceEEEEeec-cccccccHHHHHHHHHhccccceEEEecc-cccCchhHHHHHHH
Confidence 110 000000 0011112346888887765 3343322100 03455678888888652 2222211111 2
Q ss_pred hccCCCCCCceEEecccCcccceeccccccccCccccceeeecccceeecccCCCcceec--C-CCccccCCcccEEEec
Q 020456 187 HVTTDNKKPQKLTLEENFLLADQVQPLFDEKVGEEVKGCIVFERMNYLTLDCLPSLTSFC--L-GNYALEFPSLEQVVVR 263 (326)
Q Consensus 187 ~~~~~~~~L~~L~i~~~c~~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~--~-~~~~~~~~~L~~L~i~ 263 (326)
.+++ +|+.|++ .+-..-..... ........++.|+.+++.+|--=+.=. . .......|+|+.+.+.
T Consensus 210 ~~~~---~LevLdl-~DNtft~egs~-------~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~ 278 (382)
T KOG1909|consen 210 EHCP---HLEVLDL-RDNTFTLEGSV-------ALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELA 278 (382)
T ss_pred HhCC---cceeeec-ccchhhhHHHH-------HHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccC
Confidence 2455 8998888 65432221100 011124556789999999984311000 0 0011247899999887
Q ss_pred cCCcccc----ccCCCCCCCCccEEEeccccC
Q 020456 264 QCPKMKI----FSQGVLDTPMLNKVNVTEEEK 291 (326)
Q Consensus 264 ~c~~l~~----l~~~~~~~~~L~~L~l~~c~~ 291 (326)
++.--.. +.......|.|++|.+++|+.
T Consensus 279 gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 279 GNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred cchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 7653221 222333578999999999854
|
|
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.06 E-value=0.061 Score=53.37 Aligned_cols=109 Identities=16% Similarity=0.111 Sum_probs=67.5
Q ss_pred CccEEEcccCCCcccccccCCCCCCCCCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccCcCcceecccccccccc
Q 020456 50 DIEYLQLSDFPCLKEIWHGQALPVSFFNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNCDSIEEVLHLEELNADK 129 (326)
Q Consensus 50 ~L~~L~l~~~~~l~~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~ 129 (326)
.++.|++.++.--..++... ..+++|+.|+++++. +....|.. ++.+++|+.|+++++..-..++..-
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i----~~L~~L~~L~Ls~N~-l~g~iP~~-~~~l~~L~~LdLs~N~lsg~iP~~l------ 486 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDI----SKLRHLQSINLSGNS-IRGNIPPS-LGSITSLEVLDLSYNSFNGSIPESL------ 486 (623)
T ss_pred EEEEEECCCCCccccCCHHH----hCCCCCCEEECCCCc-ccCcCChH-HhCCCCCCEEECCCCCCCCCCchHH------
Confidence 36777777654433333322 567899999999984 55444443 7889999999999875433332211
Q ss_pred CcCCCCCCCccEEecCCCccccccccccccccc-cccccEEeEecCCCC
Q 020456 130 EHISPLFPKLSELRLIDLPKLKRFCNFTENIIE-MLMLWSLTIENCPNM 177 (326)
Q Consensus 130 ~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~-~~~L~~L~l~~C~~l 177 (326)
..+++|+.|+++++.--..+|. .+.. +.++..+.+.+.+.+
T Consensus 487 ----~~L~~L~~L~Ls~N~l~g~iP~---~l~~~~~~~~~l~~~~N~~l 528 (623)
T PLN03150 487 ----GQLTSLRILNLNGNSLSGRVPA---ALGGRLLHRASFNFTDNAGL 528 (623)
T ss_pred ----hcCCCCCEEECcCCcccccCCh---HHhhccccCceEEecCCccc
Confidence 1346899999988764445554 2222 245566777665443
|
|
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.82 E-value=0.0023 Score=57.96 Aligned_cols=87 Identities=14% Similarity=0.242 Sum_probs=48.2
Q ss_pred CcCCCCeeEEEecccCCcccceecCCCchhhhhhhhccccCCCccEEEcccCCCcccccccCCCCCCCCCCccEEEEecC
Q 020456 8 IVSTPKLHEVQVTEKNEDELRHWEGNLNSTIQKCYEEMIGFCDIEYLQLSDFPCLKEIWHGQALPVSFFNNLEELEVDDC 87 (326)
Q Consensus 8 ~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~L~~L~l~~c 87 (326)
.+++++|++|+++. ..++.+..+. .+.+++|.+|.+.+...++.++.+. + +.+..|+.|.+.-+
T Consensus 87 F~~l~~LRrLdLS~---N~Is~I~p~A----------F~GL~~l~~Lvlyg~NkI~~l~k~~-F--~gL~slqrLllNan 150 (498)
T KOG4237|consen 87 FKTLHRLRRLDLSK---NNISFIAPDA----------FKGLASLLSLVLYGNNKITDLPKGA-F--GGLSSLQRLLLNAN 150 (498)
T ss_pred ccchhhhceecccc---cchhhcChHh----------hhhhHhhhHHHhhcCCchhhhhhhH-h--hhHHHHHHHhcChh
Confidence 55777888888772 2233333221 2346677777777766666655433 1 34455555655544
Q ss_pred CCCCcCCchhHHhhCCCCCEEEEcc
Q 020456 88 TNMSSAIPANLLRCLNNLRCLEVRN 112 (326)
Q Consensus 88 ~~l~~~~~~~~~~~l~~L~~L~l~~ 112 (326)
++..+. ...++.+++|..|.+.+
T Consensus 151 -~i~Cir-~~al~dL~~l~lLslyD 173 (498)
T KOG4237|consen 151 -HINCIR-QDALRDLPSLSLLSLYD 173 (498)
T ss_pred -hhcchh-HHHHHHhhhcchhcccc
Confidence 233333 33466777777776665
|
|
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=94.73 E-value=0.036 Score=34.13 Aligned_cols=34 Identities=15% Similarity=0.319 Sum_probs=21.8
Q ss_pred CcccEEEeccCCccccccCCCCCCCCccEEEeccc
Q 020456 255 PSLEQVVVRQCPKMKIFSQGVLDTPMLNKVNVTEE 289 (326)
Q Consensus 255 ~~L~~L~i~~c~~l~~l~~~~~~~~~L~~L~l~~c 289 (326)
++|++|+++++ .++.+|..+..+++|+.|+++++
T Consensus 1 ~~L~~L~l~~N-~i~~l~~~l~~l~~L~~L~l~~N 34 (44)
T PF12799_consen 1 KNLEELDLSNN-QITDLPPELSNLPNLETLNLSNN 34 (44)
T ss_dssp TT-SEEEETSS-S-SSHGGHGTTCTTSSEEEETSS
T ss_pred CcceEEEccCC-CCcccCchHhCCCCCCEEEecCC
Confidence 46777777554 55566665667777777777777
|
... |
| >KOG3864 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.52 E-value=0.0021 Score=53.10 Aligned_cols=40 Identities=18% Similarity=0.218 Sum_probs=21.2
Q ss_pred ecccceeecccCCCcceecCCCccccCCcccEEEeccCCcc
Q 020456 228 FERMNYLTLDCLPSLTSFCLGNYALEFPSLEQVVVRQCPKM 268 (326)
Q Consensus 228 l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l 268 (326)
.++|+.|+|++|+.+++....... .+++|+.|.+++-+.+
T Consensus 150 ~~~L~~L~lsgC~rIT~~GL~~L~-~lknLr~L~l~~l~~v 189 (221)
T KOG3864|consen 150 APSLQDLDLSGCPRITDGGLACLL-KLKNLRRLHLYDLPYV 189 (221)
T ss_pred ccchheeeccCCCeechhHHHHHH-HhhhhHHHHhcCchhh
Confidence 356666666666665554332221 4556666655555443
|
|
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=94.33 E-value=0.019 Score=50.51 Aligned_cols=52 Identities=19% Similarity=0.217 Sum_probs=25.9
Q ss_pred CccEEecCCCccccccccccccccccccccEEeEecCCCCCccCcchhhhccCCCCCCceEEe
Q 020456 138 KLSELRLIDLPKLKRFCNFTENIIEMLMLWSLTIENCPNMETFVSNSVVHVTTDNKKPQKLTL 200 (326)
Q Consensus 138 ~L~~L~l~~c~~L~~~~~~~~~~~~~~~L~~L~l~~C~~l~~~~~~~~~~~~~~~~~L~~L~i 200 (326)
.|.++++++ ..+..|.. +..-.|.++.|+++. +++... .+++ .+. +|.+|++
T Consensus 285 ~LtelDLS~-N~I~~iDE---SvKL~Pkir~L~lS~-N~i~~v--~nLa-~L~---~L~~LDL 336 (490)
T KOG1259|consen 285 ELTELDLSG-NLITQIDE---SVKLAPKLRRLILSQ-NRIRTV--QNLA-ELP---QLQLLDL 336 (490)
T ss_pred hhhhccccc-cchhhhhh---hhhhccceeEEeccc-cceeee--hhhh-hcc---cceEeec
Confidence 566666654 22333332 444556777777765 233332 1222 333 6666666
|
|
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.96 E-value=0.13 Score=47.83 Aligned_cols=15 Identities=40% Similarity=0.492 Sum_probs=7.1
Q ss_pred HhhCCCCCEEEEccC
Q 020456 99 LRCLNNLRCLEVRNC 113 (326)
Q Consensus 99 ~~~l~~L~~L~l~~c 113 (326)
++.+++|+.|.+.++
T Consensus 159 ~~~l~~L~~L~l~~N 173 (394)
T COG4886 159 LRNLPNLKNLDLSFN 173 (394)
T ss_pred hhccccccccccCCc
Confidence 334455555555443
|
|
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.87 E-value=0.25 Score=45.96 Aligned_cols=62 Identities=24% Similarity=0.334 Sum_probs=38.0
Q ss_pred CccEEEcccCCCcccccccCCCCCCCCCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccCcCcceec
Q 020456 50 DIEYLQLSDFPCLKEIWHGQALPVSFFNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNCDSIEEVL 120 (326)
Q Consensus 50 ~L~~L~l~~~~~l~~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~ 120 (326)
+|+.|++.+- .+..++. +...+++|+.|.+..++ +.++++. ....++|+.|++++.. +..++
T Consensus 141 nL~~L~l~~N-~i~~l~~----~~~~l~~L~~L~l~~N~-l~~l~~~--~~~~~~L~~L~ls~N~-i~~l~ 202 (394)
T COG4886 141 NLKELDLSDN-KIESLPS----PLRNLPNLKNLDLSFND-LSDLPKL--LSNLSNLNNLDLSGNK-ISDLP 202 (394)
T ss_pred hccccccccc-chhhhhh----hhhccccccccccCCch-hhhhhhh--hhhhhhhhheeccCCc-cccCc
Confidence 7888888743 3343321 12567888888888874 5555543 3367788888887743 44443
|
|
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=90.50 E-value=0.15 Score=43.86 Aligned_cols=112 Identities=20% Similarity=0.152 Sum_probs=68.6
Q ss_pred CCCCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccCc--CcceeccccccccccCcCCCCCCCccEEecCCCc--c
Q 020456 74 SFFNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNCD--SIEEVLHLEELNADKEHISPLFPKLSELRLIDLP--K 149 (326)
Q Consensus 74 ~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~--~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~--~ 149 (326)
..|.+|+.|++.++. ++.+.. +..+++|++|.+++.. ....+.. .....|+|+.|.+++-. -
T Consensus 40 d~~~~le~ls~~n~g-ltt~~~---~P~Lp~LkkL~lsdn~~~~~~~l~v----------l~e~~P~l~~l~ls~Nki~~ 105 (260)
T KOG2739|consen 40 DEFVELELLSVINVG-LTTLTN---FPKLPKLKKLELSDNYRRVSGGLEV----------LAEKAPNLKVLNLSGNKIKD 105 (260)
T ss_pred ccccchhhhhhhccc-eeeccc---CCCcchhhhhcccCCccccccccee----------hhhhCCceeEEeecCCcccc
Confidence 567888888888885 333221 4568899999998752 1111100 11233799999887521 1
Q ss_pred ccccccccccccccccccEEeEecCCCCCccC--cchhhhccCCCCCCceEEecccCcccc
Q 020456 150 LKRFCNFTENIIEMLMLWSLTIENCPNMETFV--SNSVVHVTTDNKKPQKLTLEENFLLAD 208 (326)
Q Consensus 150 L~~~~~~~~~~~~~~~L~~L~l~~C~~l~~~~--~~~~~~~~~~~~~L~~L~i~~~c~~l~ 208 (326)
+.++. .+..+++|..|.+.+|+-.. +. ...++..++ +|++|+- .++..-.
T Consensus 106 lstl~----pl~~l~nL~~Ldl~n~~~~~-l~dyre~vf~ll~---~L~~LD~-~dv~~~E 157 (260)
T KOG2739|consen 106 LSTLR----PLKELENLKSLDLFNCSVTN-LDDYREKVFLLLP---SLKYLDG-CDVDGEE 157 (260)
T ss_pred ccccc----hhhhhcchhhhhcccCCccc-cccHHHHHHHHhh---hhccccc-cccCCcc
Confidence 22332 34567888899999986443 21 235566666 8888887 6666543
|
|
| >PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D | Back alignment and domain information |
|---|
Probab=90.30 E-value=0.22 Score=23.77 Aligned_cols=11 Identities=9% Similarity=0.117 Sum_probs=4.6
Q ss_pred cccEEEeccCC
Q 020456 256 SLEQVVVRQCP 266 (326)
Q Consensus 256 ~L~~L~i~~c~ 266 (326)
+|+.|++++|.
T Consensus 2 ~L~~L~l~~n~ 12 (17)
T PF13504_consen 2 NLRTLDLSNNR 12 (17)
T ss_dssp T-SEEEETSS-
T ss_pred ccCEEECCCCC
Confidence 45555555544
|
... |
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=90.04 E-value=0.086 Score=46.47 Aligned_cols=57 Identities=19% Similarity=0.242 Sum_probs=32.7
Q ss_pred CCCccEEEcccCCCcccccccCCCCCCCCCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccC
Q 020456 48 FCDIEYLQLSDFPCLKEIWHGQALPVSFFNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNC 113 (326)
Q Consensus 48 ~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c 113 (326)
-..|++|++++. .+..+-... .-.|.++.|.++... +..+- + ++++++|+.|++++.
T Consensus 283 Wq~LtelDLS~N-~I~~iDESv----KL~Pkir~L~lS~N~-i~~v~--n-La~L~~L~~LDLS~N 339 (490)
T KOG1259|consen 283 WQELTELDLSGN-LITQIDESV----KLAPKLRRLILSQNR-IRTVQ--N-LAELPQLQLLDLSGN 339 (490)
T ss_pred Hhhhhhcccccc-chhhhhhhh----hhccceeEEeccccc-eeeeh--h-hhhcccceEeecccc
Confidence 345777777742 233322222 335778888877753 22221 1 567788888888764
|
|
| >smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily | Back alignment and domain information |
|---|
Probab=89.78 E-value=0.17 Score=27.05 Aligned_cols=18 Identities=39% Similarity=0.768 Sum_probs=12.4
Q ss_pred CCCccEEEEecCCCCCcC
Q 020456 76 FNNLEELEVDDCTNMSSA 93 (326)
Q Consensus 76 ~~~L~~L~l~~c~~l~~~ 93 (326)
+++|++|+|++|+++++.
T Consensus 1 c~~L~~L~l~~C~~itD~ 18 (26)
T smart00367 1 CPNLRELDLSGCTNITDE 18 (26)
T ss_pred CCCCCEeCCCCCCCcCHH
Confidence 467777777777776654
|
|
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=88.48 E-value=0.27 Score=42.39 Aligned_cols=115 Identities=17% Similarity=0.135 Sum_probs=59.7
Q ss_pred CCCccEEEcccCCCcccccccCCCCCCCCCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccCcCcceecccccccc
Q 020456 48 FCDIEYLQLSDFPCLKEIWHGQALPVSFFNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNCDSIEEVLHLEELNA 127 (326)
Q Consensus 48 ~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~ 127 (326)
+..|+.|++.++....- .. + -.+|+|++|.+++...-...-....+..+++|++|.+++.. +..+-....+.
T Consensus 42 ~~~le~ls~~n~gltt~---~~-~--P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nk-i~~lstl~pl~- 113 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTL---TN-F--PKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNK-IKDLSTLRPLK- 113 (260)
T ss_pred ccchhhhhhhccceeec---cc-C--CCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCc-cccccccchhh-
Confidence 44555555554433221 11 2 25678899988876211111111236677999999988754 22111111111
Q ss_pred ccCcCCCCCCCccEEecCCCccccccccccccccccccccEEeEecCCCC
Q 020456 128 DKEHISPLFPKLSELRLIDLPKLKRFCNFTENIIEMLMLWSLTIENCPNM 177 (326)
Q Consensus 128 ~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~L~~L~l~~C~~l 177 (326)
.+++|..|++.+|+...---.....+.-+++|+.|+-.++..-
T Consensus 114 -------~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~~~ 156 (260)
T KOG2739|consen 114 -------ELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVDGE 156 (260)
T ss_pred -------hhcchhhhhcccCCccccccHHHHHHHHhhhhccccccccCCc
Confidence 2457888888888654411000003344677777777665443
|
|
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.08 E-value=0.026 Score=55.33 Aligned_cols=83 Identities=13% Similarity=0.155 Sum_probs=53.4
Q ss_pred eeeecccceeecccCCCcceecCCCccccCCcccEEEeccCCccccccCCCCCCCCccEEEeccccCCCCcc--ccccCc
Q 020456 225 CIVFERMNYLTLDCLPSLTSFCLGNYALEFPSLEQVVVRQCPKMKIFSQGVLDTPMLNKVNVTEEEKDDDDE--GCWEGN 302 (326)
Q Consensus 225 ~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~~L~~L~l~~c~~~~~~~--~~~~~~ 302 (326)
+..+++|++|+|.+ ..|..+|..... .|. |+.|.+++ ..++.+. |+.++.+|+.|+++++--..-+. ..|
T Consensus 205 Lr~l~~LkhLDlsy-N~L~~vp~l~~~-gc~-L~~L~lrn-N~l~tL~-gie~LksL~~LDlsyNll~~hseL~pLw--- 276 (1096)
T KOG1859|consen 205 LRRLPKLKHLDLSY-NCLRHVPQLSMV-GCK-LQLLNLRN-NALTTLR-GIENLKSLYGLDLSYNLLSEHSELEPLW--- 276 (1096)
T ss_pred HHhccccccccccc-chhccccccchh-hhh-heeeeecc-cHHHhhh-hHHhhhhhhccchhHhhhhcchhhhHHH---
Confidence 34568899999887 557777665543 444 88888865 3444443 56678899999998852111111 233
Q ss_pred hHHHHHHHHHhhh
Q 020456 303 LNDTIKQLFNEIV 315 (326)
Q Consensus 303 ~~~~l~~l~i~~~ 315 (326)
.+.+|+.|++.|.
T Consensus 277 sLs~L~~L~LeGN 289 (1096)
T KOG1859|consen 277 SLSSLIVLWLEGN 289 (1096)
T ss_pred HHHHHHHHhhcCC
Confidence 3468888888775
|
|
| >KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=87.37 E-value=0.13 Score=49.21 Aligned_cols=33 Identities=12% Similarity=0.241 Sum_probs=17.1
Q ss_pred cccEEEeccCCccccccCCCCCCCCccEEEeccc
Q 020456 256 SLEQVVVRQCPKMKIFSQGVLDTPMLNKVNVTEE 289 (326)
Q Consensus 256 ~L~~L~i~~c~~l~~l~~~~~~~~~L~~L~l~~c 289 (326)
.|.+|++ .|.++.++|..+..+..|++|.++++
T Consensus 212 pLi~lDf-ScNkis~iPv~fr~m~~Lq~l~LenN 244 (722)
T KOG0532|consen 212 PLIRLDF-SCNKISYLPVDFRKMRHLQVLQLENN 244 (722)
T ss_pred ceeeeec-ccCceeecchhhhhhhhheeeeeccC
Confidence 3444444 45555555555555555555555544
|
|
| >PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] | Back alignment and domain information |
|---|
Probab=86.88 E-value=0.56 Score=23.91 Aligned_cols=17 Identities=12% Similarity=0.149 Sum_probs=7.8
Q ss_pred ccEEEeccCCccccccCC
Q 020456 257 LEQVVVRQCPKMKIFSQG 274 (326)
Q Consensus 257 L~~L~i~~c~~l~~l~~~ 274 (326)
|++|++++| .++.+|..
T Consensus 2 L~~Ldls~n-~l~~ip~~ 18 (22)
T PF00560_consen 2 LEYLDLSGN-NLTSIPSS 18 (22)
T ss_dssp ESEEEETSS-EESEEGTT
T ss_pred ccEEECCCC-cCEeCChh
Confidence 444555444 44444443
|
LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A .... |
| >KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=86.64 E-value=2.6 Score=35.29 Aligned_cols=63 Identities=21% Similarity=0.285 Sum_probs=30.2
Q ss_pred HhhCCCCCEEEEccCcCcceeccccccccccCcCCCCCCCccEEecCCCccccccccccccccccccccEEeEec
Q 020456 99 LRCLNNLRCLEVRNCDSIEEVLHLEELNADKEHISPLFPKLSELRLIDLPKLKRFCNFTENIIEMLMLWSLTIEN 173 (326)
Q Consensus 99 ~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~L~~L~l~~ 173 (326)
+.+++.|..|.+.+.. +.++-+ .....+|+|+.|.+.+ .+++++-... .+..+|+|++|.+-+
T Consensus 60 lp~l~rL~tLll~nNr-It~I~p---------~L~~~~p~l~~L~Ltn-Nsi~~l~dl~-pLa~~p~L~~Ltll~ 122 (233)
T KOG1644|consen 60 LPHLPRLHTLLLNNNR-ITRIDP---------DLDTFLPNLKTLILTN-NSIQELGDLD-PLASCPKLEYLTLLG 122 (233)
T ss_pred CCCccccceEEecCCc-ceeecc---------chhhhccccceEEecC-cchhhhhhcc-hhccCCccceeeecC
Confidence 3356666666665532 333311 1112455666666655 2233222111 345567777776654
|
|
| >PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A | Back alignment and domain information |
|---|
Probab=85.93 E-value=3.9 Score=30.92 Aligned_cols=9 Identities=22% Similarity=0.390 Sum_probs=2.6
Q ss_pred CCCCCEEEE
Q 020456 102 LNNLRCLEV 110 (326)
Q Consensus 102 l~~L~~L~l 110 (326)
+.+|+.+.+
T Consensus 11 ~~~l~~i~~ 19 (129)
T PF13306_consen 11 CSNLESITF 19 (129)
T ss_dssp -TT--EEEE
T ss_pred CCCCCEEEE
Confidence 344444444
|
|
| >KOG2123 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=83.60 E-value=0.057 Score=47.08 Aligned_cols=9 Identities=33% Similarity=0.438 Sum_probs=4.0
Q ss_pred cccccEEeE
Q 020456 163 MLMLWSLTI 171 (326)
Q Consensus 163 ~~~L~~L~l 171 (326)
++.|+.|.+
T Consensus 40 Mp~lEVLsL 48 (388)
T KOG2123|consen 40 MPLLEVLSL 48 (388)
T ss_pred cccceeEEe
Confidence 344444444
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 47.9 bits (113), Expect = 3e-06
Identities = 56/409 (13%), Positives = 121/409 (29%), Gaps = 108/409 (26%)
Query: 4 FSQGIVSTPKLHEVQVTEKNEDE-LRHWEGNLNSTIQKCYEEMIGFCDIEYLQLSDFPCL 62
+ I+S ++ + + K+ L S ++ ++ + E L+ ++ L
Sbjct: 41 MPKSILSKEEIDHI-IMSKDAVSGTLRLFWTLLSKQEEMVQKFVE----EVLR-INYKFL 94
Query: 63 KEIWHGQALPVSFFNNLEELEVDDCTNMSSAIP----------ANLLRCLNNLR------ 106
+ S + + D N + L + L LR
Sbjct: 95 MSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVL 154
Query: 107 ----------------C---------------LEVRNCDSIEEVL-HLEEL--------N 126
C L ++NC+S E VL L++L
Sbjct: 155 IDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWT 214
Query: 127 ADKEHISPLFPKLSEL--RLIDLPKLKRFCN--------FTENIIEML-----MLWSLTI 171
+ +H S + ++ + L L K K + N +L LT
Sbjct: 215 SRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKIL--LTT 272
Query: 172 ENCPNMETFVSNSVVHVTTDNK-----KPQKLTLEENFL---------LADQVQPLFDEK 217
+ + + H++ D+ + +L +L P
Sbjct: 273 RFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSI 332
Query: 218 VGEEVK-GCIVFERMNYLTLDCLPSLTSFCLGNYALEFPSLEQVVVRQC-PKMKIFSQGV 275
+ E ++ G ++ ++ D L ++ L LE R+ ++ +F
Sbjct: 333 IAESIRDGLATWDNWKHVNCDKLTTIIESSLNV-------LEPAEYRKMFDRLSVFPPSA 385
Query: 276 LDTPMLNKV---NVTEEEKDDDDEGCWEGNLNDTIKQLFNEIVSINEVL 321
+L + +V + + + +L + KQ +SI +
Sbjct: 386 HIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVE--KQPKESTISIPSIY 432
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 | Back alignment and structure |
|---|
Score = 40.7 bits (95), Expect = 5e-04
Identities = 24/199 (12%), Positives = 63/199 (31%), Gaps = 25/199 (12%)
Query: 69 QALPVSFFNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNCDSIEEVLHLEELNAD 128
L + ++LE L++D C+ ++ +++ ++ L + E+
Sbjct: 130 DRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGK------- 182
Query: 129 KEHISPLFPKLSELRLIDLPKLKRFCNFTENIIEMLMLWSLTIENCPNMETFVSNSVVHV 188
+ L + L +++ + F + +E + NC ++ + +
Sbjct: 183 --WLHELAQHNTSLEVLNF-YMTEFAKISPKDLETIA------RNCRSLVSVKVGDFEIL 233
Query: 189 TTDNKKPQKLTLEENFLLADQVQPLFDEKVGEEVKG-CIVFERMNYLTLDCLPSLTSFCL 247
LEE + EK V + ++Y+ + +P L F
Sbjct: 234 ELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFA- 292
Query: 248 GNYALEFPSLEQVVVRQCP 266
+ ++ +
Sbjct: 293 -------AQIRKLDLLYAL 304
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 40.5 bits (95), Expect = 5e-04
Identities = 37/207 (17%), Positives = 68/207 (32%), Gaps = 30/207 (14%)
Query: 69 QALPVSFFN---NLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNCDSIEEVLHLEEL 125
L FN NLE L + C + + N + L +L L +R+ +++++
Sbjct: 92 LQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDN-------NIKKI 144
Query: 126 NADKEHISPLFPKLSELRLIDLP--KLKRFC-----NFTENIIEMLMLWSLTIENCPNME 178
F + ++DL K+K C NF +L L S+T+++
Sbjct: 145 QPA-----SFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYW 199
Query: 179 TFVSNSVVHVTTDNKKPQKLTLEENFLLADQVQPLFDEKVGEEVKGCIVFERMNYLT--- 235
N L L N + FD G +++ I+ N +
Sbjct: 200 L--GWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFG 257
Query: 236 ---LDCLPSLTSFCLGNYALEFPSLEQ 259
+ T L ++ L +
Sbjct: 258 HTNFKDPDNFTFKGLEASGVKTCDLSK 284
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 | Back alignment and structure |
|---|
Score = 40.3 bits (94), Expect = 7e-04
Identities = 31/194 (15%), Positives = 58/194 (29%), Gaps = 25/194 (12%)
Query: 76 FNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNCDSIEEVLHLEELNADKEHISPL 135
F N + L + C S+ A + NL+ L++R D + H H
Sbjct: 129 FKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGH------WLSHFPDT 182
Query: 136 FPKLSELRLIDLPKLKRFCNFTENIIEMLMLWSLTIENCPNMETFVSNSVVHVTTDN--- 192
+ L L + L + + +E L + CPN+++ N V +
Sbjct: 183 YTSLVSLNISCL-----ASEVSFSALERL------VTRCPNLKSLKLNRAVPLEKLATLL 231
Query: 193 KKPQKLTLEENFLLADQVQPLFDEKVGEEVKGCIVFERMNYLTLDCLPSLTSFCLGNYAL 252
++ +L +V+P + + GC L L
Sbjct: 232 QRAPQLEELGTGGYTAEVRPDVYSGLSVALSGC-----KELRCLSGFWDAVPAYLPAVYS 286
Query: 253 EFPSLEQVVVRQCP 266
L + +
Sbjct: 287 VCSRLTTLNLSYAT 300
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 326 | |||
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 99.72 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 99.63 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 99.52 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.52 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.51 | |
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 99.49 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 99.48 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 99.48 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 99.48 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 99.48 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 99.47 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.46 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 99.46 | |
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 99.46 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 99.45 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 99.45 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 99.45 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 99.45 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.44 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 99.44 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 99.43 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 99.41 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.41 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 99.41 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 99.41 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 99.4 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.39 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.39 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.39 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.38 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.38 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.38 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.38 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 99.37 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.36 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 99.36 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 99.36 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 99.34 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 99.34 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 99.34 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 99.34 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 99.32 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 99.32 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 99.32 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 99.32 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 99.3 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 99.3 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 99.3 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.3 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.29 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.28 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 99.27 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.27 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 99.27 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.27 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.26 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 99.26 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 99.25 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 99.25 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.23 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 99.22 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 99.22 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 99.21 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 99.21 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.19 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 99.18 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.17 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.17 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 99.17 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 99.17 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 99.17 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.17 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.17 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.16 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 99.16 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 99.14 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 99.12 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 99.12 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 99.1 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 99.09 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 99.09 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 99.05 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.05 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 99.05 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 98.99 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 98.99 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 98.96 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 98.94 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 98.93 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 98.93 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 98.92 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 98.92 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 98.9 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 98.89 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 98.85 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 98.85 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 98.83 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 98.8 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 98.79 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 98.74 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 98.73 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 98.73 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 98.67 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 98.62 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 98.6 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 98.59 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 98.5 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 98.48 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 98.47 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 98.46 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 98.46 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 98.44 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 98.42 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 98.42 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 98.42 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 98.37 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 98.34 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 98.33 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 98.33 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 98.27 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 98.22 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 98.22 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 98.19 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 98.16 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 98.05 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 98.03 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 98.01 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 98.0 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 97.97 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 97.91 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 97.86 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 97.82 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 97.82 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 97.8 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 97.78 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.78 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 97.66 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 97.65 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 97.65 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 97.63 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 97.5 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.45 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 97.4 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 97.32 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 97.3 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 97.09 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 97.08 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 97.01 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 96.94 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 96.94 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 96.66 | |
| 4gt6_A | 394 | Cell surface protein; leucine rich repeats, putati | 96.63 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 96.48 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 95.22 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 94.58 | |
| 4gt6_A | 394 | Cell surface protein; leucine rich repeats, putati | 94.46 | |
| 4h09_A | 379 | Hypothetical leucine rich repeat protein; two LRR_ | 94.1 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 91.61 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 91.14 | |
| 4h09_A | 379 | Hypothetical leucine rich repeat protein; two LRR_ | 82.94 |
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.72 E-value=2.3e-16 Score=142.05 Aligned_cols=232 Identities=17% Similarity=0.201 Sum_probs=163.8
Q ss_pred CCCeeEEEecccCCcccceecCCCchhhhhhhhccccCCCccEEEcccCCCcccccccCCCCCCCCCCccEEEEecCCCC
Q 020456 11 TPKLHEVQVTEKNEDELRHWEGNLNSTIQKCYEEMIGFCDIEYLQLSDFPCLKEIWHGQALPVSFFNNLEELEVDDCTNM 90 (326)
Q Consensus 11 ~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~L~~L~l~~c~~l 90 (326)
.++++.|++.+.+.. .+.. .+..+++|++|++.++.- ..++... ..+++|++|++++|. +
T Consensus 80 ~~~l~~L~L~~n~l~---~lp~-----------~l~~l~~L~~L~L~~n~l-~~lp~~~----~~l~~L~~L~Ls~n~-l 139 (328)
T 4fcg_A 80 QPGRVALELRSVPLP---QFPD-----------QAFRLSHLQHMTIDAAGL-MELPDTM----QQFAGLETLTLARNP-L 139 (328)
T ss_dssp STTCCEEEEESSCCS---SCCS-----------CGGGGTTCSEEEEESSCC-CCCCSCG----GGGTTCSEEEEESCC-C
T ss_pred ccceeEEEccCCCch---hcCh-----------hhhhCCCCCEEECCCCCc-cchhHHH----hccCCCCEEECCCCc-c
Confidence 477888888833322 1111 133488999999987654 3555433 568999999999984 5
Q ss_pred CcCCchhHHhhCCCCCEEEEccCcCcceeccccccccccCcCCCCCCCccEEecCCCccccccccccccccccccccEEe
Q 020456 91 SSAIPANLLRCLNNLRCLEVRNCDSIEEVLHLEELNADKEHISPLFPKLSELRLIDLPKLKRFCNFTENIIEMLMLWSLT 170 (326)
Q Consensus 91 ~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~L~~L~ 170 (326)
+.++.. +..+++|++|++++|.....++...+... .......+++|+.|+++++ +++.++. .+..+++|++|+
T Consensus 140 ~~lp~~--l~~l~~L~~L~L~~n~~~~~~p~~~~~~~-~~~~~~~l~~L~~L~L~~n-~l~~lp~---~l~~l~~L~~L~ 212 (328)
T 4fcg_A 140 RALPAS--IASLNRLRELSIRACPELTELPEPLASTD-ASGEHQGLVNLQSLRLEWT-GIRSLPA---SIANLQNLKSLK 212 (328)
T ss_dssp CCCCGG--GGGCTTCCEEEEEEETTCCCCCSCSEEEC--CCCEEESTTCCEEEEEEE-CCCCCCG---GGGGCTTCCEEE
T ss_pred ccCcHH--HhcCcCCCEEECCCCCCccccChhHhhcc-chhhhccCCCCCEEECcCC-CcCcchH---hhcCCCCCCEEE
Confidence 555433 78899999999999877765543221100 0000112578999999886 4666665 677889999999
Q ss_pred EecCCCCCccCcchhhhccCCCCCCceEEecccCcccceeccccccccCccccceeeecccceeecccCCCcceecCCCc
Q 020456 171 IENCPNMETFVSNSVVHVTTDNKKPQKLTLEENFLLADQVQPLFDEKVGEEVKGCIVFERMNYLTLDCLPSLTSFCLGNY 250 (326)
Q Consensus 171 l~~C~~l~~~~~~~~~~~~~~~~~L~~L~i~~~c~~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~ 250 (326)
+++| .+..++ .. ...++ +|++|++ .+|.....+... ...+++|++|++.+|..+..++....
T Consensus 213 L~~N-~l~~l~-~~-l~~l~---~L~~L~L-s~n~~~~~~p~~-----------~~~l~~L~~L~L~~n~~~~~~p~~~~ 274 (328)
T 4fcg_A 213 IRNS-PLSALG-PA-IHHLP---KLEELDL-RGCTALRNYPPI-----------FGGRAPLKRLILKDCSNLLTLPLDIH 274 (328)
T ss_dssp EESS-CCCCCC-GG-GGGCT---TCCEEEC-TTCTTCCBCCCC-----------TTCCCCCCEEECTTCTTCCBCCTTGG
T ss_pred ccCC-CCCcCc-hh-hccCC---CCCEEEC-cCCcchhhhHHH-----------hcCCCCCCEEECCCCCchhhcchhhh
Confidence 9987 455553 33 33455 8999999 888876654332 34568899999999998888886544
Q ss_pred cccCCcccEEEeccCCccccccCCCCCCCCccEEEeccc
Q 020456 251 ALEFPSLEQVVVRQCPKMKIFSQGVLDTPMLNKVNVTEE 289 (326)
Q Consensus 251 ~~~~~~L~~L~i~~c~~l~~l~~~~~~~~~L~~L~l~~c 289 (326)
.+++|++|++++|+.++.+|..+..+++|+.+.+...
T Consensus 275 --~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 275 --RLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH 311 (328)
T ss_dssp --GCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGG
T ss_pred --cCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHH
Confidence 7899999999999999999998888999999988754
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.63 E-value=2e-15 Score=136.00 Aligned_cols=221 Identities=13% Similarity=0.116 Sum_probs=162.2
Q ss_pred CCCccEEEcccCCCcccccccCCCCCCCCCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccCcCcceecccccccc
Q 020456 48 FCDIEYLQLSDFPCLKEIWHGQALPVSFFNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNCDSIEEVLHLEELNA 127 (326)
Q Consensus 48 ~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~ 127 (326)
.+++++|++.++. +..++... ..+++|++|+++++. ++.++.. ++.+++|++|+++++. +..++..-
T Consensus 80 ~~~l~~L~L~~n~-l~~lp~~l----~~l~~L~~L~L~~n~-l~~lp~~--~~~l~~L~~L~Ls~n~-l~~lp~~l---- 146 (328)
T 4fcg_A 80 QPGRVALELRSVP-LPQFPDQA----FRLSHLQHMTIDAAG-LMELPDT--MQQFAGLETLTLARNP-LRALPASI---- 146 (328)
T ss_dssp STTCCEEEEESSC-CSSCCSCG----GGGTTCSEEEEESSC-CCCCCSC--GGGGTTCSEEEEESCC-CCCCCGGG----
T ss_pred ccceeEEEccCCC-chhcChhh----hhCCCCCEEECCCCC-ccchhHH--HhccCCCCEEECCCCc-cccCcHHH----
Confidence 6899999999755 45555443 568999999999985 5555433 6889999999999975 44443211
Q ss_pred ccCcCCCCCCCccEEecCCCccccccccccc------cccccccccEEeEecCCCCCccCcchhhhccCCCCCCceEEec
Q 020456 128 DKEHISPLFPKLSELRLIDLPKLKRFCNFTE------NIIEMLMLWSLTIENCPNMETFVSNSVVHVTTDNKKPQKLTLE 201 (326)
Q Consensus 128 ~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~------~~~~~~~L~~L~l~~C~~l~~~~~~~~~~~~~~~~~L~~L~i~ 201 (326)
..+++|+.|++++|..++.++..-. .+..+++|+.|++++| .++.+ +..+ ..++ +|++|++
T Consensus 147 ------~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n-~l~~l-p~~l-~~l~---~L~~L~L- 213 (328)
T 4fcg_A 147 ------ASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWT-GIRSL-PASI-ANLQ---NLKSLKI- 213 (328)
T ss_dssp ------GGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEE-CCCCC-CGGG-GGCT---TCCEEEE-
T ss_pred ------hcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCC-CcCcc-hHhh-cCCC---CCCEEEc-
Confidence 1357999999999998888876211 1345899999999997 56655 3333 3455 9999999
Q ss_pred ccCcccceeccccccccCccccceeeecccceeecccCCCcceecCCCccccCCcccEEEeccCCccccccCCCCCCCCc
Q 020456 202 ENFLLADQVQPLFDEKVGEEVKGCIVFERMNYLTLDCLPSLTSFCLGNYALEFPSLEQVVVRQCPKMKIFSQGVLDTPML 281 (326)
Q Consensus 202 ~~c~~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~~L 281 (326)
.+|. ++.+... ...+++|++|++.+|.....++.... .+++|++|++++|..++.+|..+..+++|
T Consensus 214 ~~N~-l~~l~~~-----------l~~l~~L~~L~Ls~n~~~~~~p~~~~--~l~~L~~L~L~~n~~~~~~p~~~~~l~~L 279 (328)
T 4fcg_A 214 RNSP-LSALGPA-----------IHHLPKLEELDLRGCTALRNYPPIFG--GRAPLKRLILKDCSNLLTLPLDIHRLTQL 279 (328)
T ss_dssp ESSC-CCCCCGG-----------GGGCTTCCEEECTTCTTCCBCCCCTT--CCCCCCEEECTTCTTCCBCCTTGGGCTTC
T ss_pred cCCC-CCcCchh-----------hccCCCCCEEECcCCcchhhhHHHhc--CCCCCCEEECCCCCchhhcchhhhcCCCC
Confidence 8876 3333221 44678999999999998888876554 78999999999999999999888889999
Q ss_pred cEEEeccccCCCCccccccCchHHHHHHH
Q 020456 282 NKVNVTEEEKDDDDEGCWEGNLNDTIKQL 310 (326)
Q Consensus 282 ~~L~l~~c~~~~~~~~~~~~~~~~~l~~l 310 (326)
++|++++|.... .++..+..+++++.+
T Consensus 280 ~~L~L~~n~~~~--~iP~~l~~L~~L~~l 306 (328)
T 4fcg_A 280 EKLDLRGCVNLS--RLPSLIAQLPANCII 306 (328)
T ss_dssp CEEECTTCTTCC--CCCGGGGGSCTTCEE
T ss_pred CEEeCCCCCchh--hccHHHhhccCceEE
Confidence 999999996543 333333333344333
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=6.8e-13 Score=128.83 Aligned_cols=61 Identities=11% Similarity=0.132 Sum_probs=37.7
Q ss_pred eeecccceeecccCCCcceecCCCccccCCcccEEEeccCCccccccCCCCCCCCccEEEeccc
Q 020456 226 IVFERMNYLTLDCLPSLTSFCLGNYALEFPSLEQVVVRQCPKMKIFSQGVLDTPMLNKVNVTEE 289 (326)
Q Consensus 226 ~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~~L~~L~l~~c 289 (326)
..+++|++|++.+|. ++.++..... .+++|++|+++++.-....|..+..++.| +|++++|
T Consensus 473 ~~l~~L~~L~Ls~n~-l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N 533 (606)
T 3t6q_A 473 QTLGRLEILVLSFCD-LSSIDQHAFT-SLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASN 533 (606)
T ss_dssp GGCTTCCEEECTTSC-CCEECTTTTT-TCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSS
T ss_pred ccCCCccEEECCCCc-cCccChhhhc-cccCCCEEECCCCccCcCChhHhCccccc-EEECcCC
Confidence 345677777777763 4444332222 56778888777765444445566667777 7777776
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.52 E-value=1e-12 Score=122.89 Aligned_cols=208 Identities=18% Similarity=0.197 Sum_probs=137.3
Q ss_pred cccCCCccEEEcccCCCcccccccCCCCCCCCCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccCcCcceeccccc
Q 020456 45 MIGFCDIEYLQLSDFPCLKEIWHGQALPVSFFNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNCDSIEEVLHLEE 124 (326)
Q Consensus 45 ~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~ 124 (326)
+..+++|++|+++++. +..+.... ...+++|++|+++++ +++.+++. .+..+++|++|+++++. ++.++.
T Consensus 84 ~~~l~~L~~L~Ls~n~-i~~i~~~~---~~~l~~L~~L~L~~n-~l~~~~~~-~~~~l~~L~~L~L~~N~-i~~~~~--- 153 (440)
T 3zyj_A 84 FKHLRHLEILQLSRNH-IRTIEIGA---FNGLANLNTLELFDN-RLTTIPNG-AFVYLSKLKELWLRNNP-IESIPS--- 153 (440)
T ss_dssp TSSCSSCCEEECCSSC-CCEECGGG---GTTCSSCCEEECCSS-CCSSCCTT-TSCSCSSCCEEECCSCC-CCEECT---
T ss_pred hhCCCCCCEEECCCCc-CCccChhh---ccCCccCCEEECCCC-cCCeeCHh-HhhccccCceeeCCCCc-ccccCH---
Confidence 3447788888887654 34333222 145678888888887 46555443 25677888888888754 433321
Q ss_pred cccccCcCCCCCCCccEEecCCCccccccccccccccccccccEEeEecCCCCCccCcchhhhccCCCCCCceEEecccC
Q 020456 125 LNADKEHISPLFPKLSELRLIDLPKLKRFCNFTENIIEMLMLWSLTIENCPNMETFVSNSVVHVTTDNKKPQKLTLEENF 204 (326)
Q Consensus 125 ~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~L~~L~l~~C~~l~~~~~~~~~~~~~~~~~L~~L~i~~~c 204 (326)
.....+++|+.|++.++..+..++.. .+..+++|++|++++| +++.++. ...+. +|++|++ .++
T Consensus 154 ------~~~~~l~~L~~L~l~~~~~l~~i~~~--~~~~l~~L~~L~L~~n-~l~~~~~---~~~l~---~L~~L~L-s~N 217 (440)
T 3zyj_A 154 ------YAFNRIPSLRRLDLGELKRLSYISEG--AFEGLSNLRYLNLAMC-NLREIPN---LTPLI---KLDELDL-SGN 217 (440)
T ss_dssp ------TTTTTCTTCCEEECCCCTTCCEECTT--TTTTCSSCCEEECTTS-CCSSCCC---CTTCS---SCCEEEC-TTS
T ss_pred ------HHhhhCcccCEeCCCCCCCcceeCcc--hhhcccccCeecCCCC-cCccccc---cCCCc---ccCEEEC-CCC
Confidence 11123578899999888888777652 3567888999999887 5665532 22344 8999998 776
Q ss_pred cccceeccccccccCccccceeeecccceeecccCCCcceecCCCccccCCcccEEEeccCCccccccC-CCCCCCCccE
Q 020456 205 LLADQVQPLFDEKVGEEVKGCIVFERMNYLTLDCLPSLTSFCLGNYALEFPSLEQVVVRQCPKMKIFSQ-GVLDTPMLNK 283 (326)
Q Consensus 205 ~~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~-~~~~~~~L~~ 283 (326)
. ++.+.+.. ...+++|++|++.++ .++.+...... .+++|++|+++++ .++.++. .+..+++|++
T Consensus 218 ~-l~~~~~~~----------~~~l~~L~~L~L~~n-~l~~~~~~~~~-~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~ 283 (440)
T 3zyj_A 218 H-LSAIRPGS----------FQGLMHLQKLWMIQS-QIQVIERNAFD-NLQSLVEINLAHN-NLTLLPHDLFTPLHHLER 283 (440)
T ss_dssp C-CCEECTTT----------TTTCTTCCEEECTTC-CCCEECTTSST-TCTTCCEEECTTS-CCCCCCTTTTSSCTTCCE
T ss_pred c-cCccChhh----------hccCccCCEEECCCC-ceeEEChhhhc-CCCCCCEEECCCC-CCCccChhHhccccCCCE
Confidence 4 54443321 335688999999985 46666554333 7889999999876 5666665 3456899999
Q ss_pred EEeccccCC
Q 020456 284 VNVTEEEKD 292 (326)
Q Consensus 284 L~l~~c~~~ 292 (326)
|++++++-.
T Consensus 284 L~L~~Np~~ 292 (440)
T 3zyj_A 284 IHLHHNPWN 292 (440)
T ss_dssp EECCSSCEE
T ss_pred EEcCCCCcc
Confidence 999887533
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.51 E-value=1.5e-12 Score=122.10 Aligned_cols=215 Identities=17% Similarity=0.181 Sum_probs=142.1
Q ss_pred cccCCCccEEEcccCCCcccccccCCCCCCCCCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccCcCcceeccccc
Q 020456 45 MIGFCDIEYLQLSDFPCLKEIWHGQALPVSFFNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNCDSIEEVLHLEE 124 (326)
Q Consensus 45 ~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~ 124 (326)
+..+++|++|+++++. +..+.... ...+++|++|+++++. ++.+++. .++.+++|++|+++++. ++.++.
T Consensus 95 ~~~l~~L~~L~Ls~n~-i~~~~~~~---~~~l~~L~~L~L~~n~-l~~~~~~-~~~~l~~L~~L~L~~N~-l~~~~~--- 164 (452)
T 3zyi_A 95 FRHLHHLEVLQLGRNS-IRQIEVGA---FNGLASLNTLELFDNW-LTVIPSG-AFEYLSKLRELWLRNNP-IESIPS--- 164 (452)
T ss_dssp TTTCTTCCEEECCSSC-CCEECTTT---TTTCTTCCEEECCSSC-CSBCCTT-TSSSCTTCCEEECCSCC-CCEECT---
T ss_pred cCCCCCCCEEECCCCc-cCCcChhh---ccCcccCCEEECCCCc-CCccChh-hhcccCCCCEEECCCCC-cceeCH---
Confidence 3347888888888653 34333222 2457888888888874 5555443 35678888888888764 443321
Q ss_pred cccccCcCCCCCCCccEEecCCCccccccccccccccccccccEEeEecCCCCCccCcchhhhccCCCCCCceEEecccC
Q 020456 125 LNADKEHISPLFPKLSELRLIDLPKLKRFCNFTENIIEMLMLWSLTIENCPNMETFVSNSVVHVTTDNKKPQKLTLEENF 204 (326)
Q Consensus 125 ~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~L~~L~l~~C~~l~~~~~~~~~~~~~~~~~L~~L~i~~~c 204 (326)
.....+++|+.|+++++..++.++.. .+..+++|+.|++++| ++..++. ...+. +|++|++ .++
T Consensus 165 ------~~~~~l~~L~~L~l~~~~~l~~i~~~--~~~~l~~L~~L~L~~n-~l~~~~~---~~~l~---~L~~L~L-s~N 228 (452)
T 3zyi_A 165 ------YAFNRVPSLMRLDLGELKKLEYISEG--AFEGLFNLKYLNLGMC-NIKDMPN---LTPLV---GLEELEM-SGN 228 (452)
T ss_dssp ------TTTTTCTTCCEEECCCCTTCCEECTT--TTTTCTTCCEEECTTS-CCSSCCC---CTTCT---TCCEEEC-TTS
T ss_pred ------hHHhcCCcccEEeCCCCCCccccChh--hccCCCCCCEEECCCC-ccccccc---ccccc---cccEEEC-cCC
Confidence 11124578999999988888887653 3567888999999886 4555532 22344 8999998 776
Q ss_pred cccceeccccccccCccccceeeecccceeecccCCCcceecCCCccccCCcccEEEeccCCccccccC-CCCCCCCccE
Q 020456 205 LLADQVQPLFDEKVGEEVKGCIVFERMNYLTLDCLPSLTSFCLGNYALEFPSLEQVVVRQCPKMKIFSQ-GVLDTPMLNK 283 (326)
Q Consensus 205 ~~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~-~~~~~~~L~~ 283 (326)
. ++.+.+.. ...+++|++|++.++. ++.+...... .+++|++|+++++ .++.+|. .+..+++|++
T Consensus 229 ~-l~~~~~~~----------~~~l~~L~~L~L~~n~-l~~~~~~~~~-~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~ 294 (452)
T 3zyi_A 229 H-FPEIRPGS----------FHGLSSLKKLWVMNSQ-VSLIERNAFD-GLASLVELNLAHN-NLSSLPHDLFTPLRYLVE 294 (452)
T ss_dssp C-CSEECGGG----------GTTCTTCCEEECTTSC-CCEECTTTTT-TCTTCCEEECCSS-CCSCCCTTSSTTCTTCCE
T ss_pred c-CcccCccc----------ccCccCCCEEEeCCCc-CceECHHHhc-CCCCCCEEECCCC-cCCccChHHhccccCCCE
Confidence 5 44432221 3456899999999864 5555443332 7899999999877 5666775 4457899999
Q ss_pred EEeccccCCCCccccc
Q 020456 284 VNVTEEEKDDDDEGCW 299 (326)
Q Consensus 284 L~l~~c~~~~~~~~~~ 299 (326)
|++++++-.-+....|
T Consensus 295 L~L~~Np~~CdC~~~~ 310 (452)
T 3zyi_A 295 LHLHHNPWNCDCDILW 310 (452)
T ss_dssp EECCSSCEECSTTTHH
T ss_pred EEccCCCcCCCCCchH
Confidence 9999875443334443
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=5.2e-13 Score=133.44 Aligned_cols=62 Identities=19% Similarity=0.141 Sum_probs=30.0
Q ss_pred cCCCccEEEcccCCCcccccccCCCCCCCCCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccCc
Q 020456 47 GFCDIEYLQLSDFPCLKEIWHGQALPVSFFNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNCD 114 (326)
Q Consensus 47 ~~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~ 114 (326)
.+++|++|++.++.....++... ..+++|++|++.+|. +....+.. +..+++|++|++++|.
T Consensus 416 ~l~~L~~L~Ls~N~l~~~~p~~l----~~l~~L~~L~L~~n~-l~~~~p~~-~~~l~~L~~L~L~~N~ 477 (768)
T 3rgz_A 416 NCSELVSLHLSFNYLSGTIPSSL----GSLSKLRDLKLWLNM-LEGEIPQE-LMYVKTLETLILDFND 477 (768)
T ss_dssp GCTTCCEEECCSSEEESCCCGGG----GGCTTCCEEECCSSC-CCSCCCGG-GGGCTTCCEEECCSSC
T ss_pred cCCCCCEEECcCCcccCcccHHH----hcCCCCCEEECCCCc-ccCcCCHH-HcCCCCceEEEecCCc
Confidence 35666666666543322222221 345566666666653 33332322 4455666666665553
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=99.48 E-value=9.4e-13 Score=118.94 Aligned_cols=228 Identities=11% Similarity=0.152 Sum_probs=117.2
Q ss_pred CcCCCCeeEEEecccCCcccceecCCCchhhhhhhhccccCCCccEEEcccCCCcccccccCCCCCCCCCCccEEEEecC
Q 020456 8 IVSTPKLHEVQVTEKNEDELRHWEGNLNSTIQKCYEEMIGFCDIEYLQLSDFPCLKEIWHGQALPVSFFNNLEELEVDDC 87 (326)
Q Consensus 8 ~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~L~~L~l~~c 87 (326)
+..+++|++|++.+....... .+..+++|++|++.++.- ..+.. ...+++|++|++++|
T Consensus 84 ~~~l~~L~~L~L~~n~i~~~~---------------~~~~l~~L~~L~l~~n~i-~~~~~-----~~~l~~L~~L~l~~n 142 (347)
T 4fmz_A 84 LSNLVKLTNLYIGTNKITDIS---------------ALQNLTNLRELYLNEDNI-SDISP-----LANLTKMYSLNLGAN 142 (347)
T ss_dssp GTTCTTCCEEECCSSCCCCCG---------------GGTTCTTCSEEECTTSCC-CCCGG-----GTTCTTCCEEECTTC
T ss_pred hhcCCcCCEEEccCCcccCch---------------HHcCCCcCCEEECcCCcc-cCchh-----hccCCceeEEECCCC
Confidence 668889999998843322211 133467777777765542 22221 145566777777766
Q ss_pred CCCCcCCchhHHhhCCCCCEEEEccCcCcceecccccccc------c-----cCcCCCCCCCccEEecCCCccccccccc
Q 020456 88 TNMSSAIPANLLRCLNNLRCLEVRNCDSIEEVLHLEELNA------D-----KEHISPLFPKLSELRLIDLPKLKRFCNF 156 (326)
Q Consensus 88 ~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~------~-----~~~~~~~~~~L~~L~l~~c~~L~~~~~~ 156 (326)
........ +..+++|++|++++|.. ..+........ . .......+++|+.|.+.++. +..+.
T Consensus 143 ~~~~~~~~---~~~l~~L~~L~l~~~~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~-l~~~~-- 215 (347)
T 4fmz_A 143 HNLSDLSP---LSNMTGLNYLTVTESKV-KDVTPIANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQ-ITDIT-- 215 (347)
T ss_dssp TTCCCCGG---GTTCTTCCEEECCSSCC-CCCGGGGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECCSSC-CCCCG--
T ss_pred CCcccccc---hhhCCCCcEEEecCCCc-CCchhhccCCCCCEEEccCCcccccccccCCCccceeecccCC-CCCCc--
Confidence 55443322 45666666666666532 21211000000 0 00000122344444444432 22211
Q ss_pred cccccccccccEEeEecCCCCCccCcchhhhccCCCCCCceEEecccCcccceeccccccccCccccceeeecccceeec
Q 020456 157 TENIIEMLMLWSLTIENCPNMETFVSNSVVHVTTDNKKPQKLTLEENFLLADQVQPLFDEKVGEEVKGCIVFERMNYLTL 236 (326)
Q Consensus 157 ~~~~~~~~~L~~L~l~~C~~l~~~~~~~~~~~~~~~~~L~~L~i~~~c~~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l 236 (326)
.+..+++|++|++++| .++...+ ...++ +|++|++ .+|. ++.+.. ...+++|++|++
T Consensus 216 --~~~~~~~L~~L~l~~n-~l~~~~~---~~~l~---~L~~L~l-~~n~-l~~~~~------------~~~l~~L~~L~l 272 (347)
T 4fmz_A 216 --PVANMTRLNSLKIGNN-KITDLSP---LANLS---QLTWLEI-GTNQ-ISDINA------------VKDLTKLKMLNV 272 (347)
T ss_dssp --GGGGCTTCCEEECCSS-CCCCCGG---GTTCT---TCCEEEC-CSSC-CCCCGG------------GTTCTTCCEEEC
T ss_pred --hhhcCCcCCEEEccCC-ccCCCcc---hhcCC---CCCEEEC-CCCc-cCCChh------------HhcCCCcCEEEc
Confidence 1345566666666665 3444322 22333 6777776 6553 222210 234577888888
Q ss_pred ccCCCcceecCCCccccCCcccEEEeccCCccccccCCCCCCCCccEEEecccc
Q 020456 237 DCLPSLTSFCLGNYALEFPSLEQVVVRQCPKMKIFSQGVLDTPMLNKVNVTEEE 290 (326)
Q Consensus 237 ~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~~L~~L~l~~c~ 290 (326)
.++ .++.++. ...+++|++|++++|.--...+..+..+++|++|++++|.
T Consensus 273 ~~n-~l~~~~~---~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 322 (347)
T 4fmz_A 273 GSN-QISDISV---LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH 322 (347)
T ss_dssp CSS-CCCCCGG---GGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSS
T ss_pred cCC-ccCCChh---hcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCc
Confidence 776 4444432 1267788888887775443344445567888888888874
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.48 E-value=3.4e-12 Score=120.35 Aligned_cols=181 Identities=19% Similarity=0.195 Sum_probs=106.8
Q ss_pred CCCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccCcCcceeccccccccccCcCCCCCCCccEEecCCCccccccc
Q 020456 75 FFNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNCDSIEEVLHLEELNADKEHISPLFPKLSELRLIDLPKLKRFC 154 (326)
Q Consensus 75 ~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~ 154 (326)
.+++|++|++.+| +++.+++ ..+..+++|+.|+++++. +..+.. .....+++|+.|++.++..+..++
T Consensus 150 ~l~~L~~L~l~~n-~l~~~~~-~~l~~l~~L~~L~l~~n~-i~~~~~---------~~~~~l~~L~~L~l~~~~~~~~~~ 217 (477)
T 2id5_A 150 GLNSLEQLTLEKC-NLTSIPT-EALSHLHGLIVLRLRHLN-INAIRD---------YSFKRLYRLKVLEISHWPYLDTMT 217 (477)
T ss_dssp TCTTCCEEEEESC-CCSSCCH-HHHTTCTTCCEEEEESCC-CCEECT---------TCSCSCTTCCEEEEECCTTCCEEC
T ss_pred CCCCCCEEECCCC-cCcccCh-hHhcccCCCcEEeCCCCc-CcEeCh---------hhcccCcccceeeCCCCccccccC
Confidence 3455555555555 2333332 224455555555555543 222211 011234678888888877777666
Q ss_pred cccccccccccccEEeEecCCCCCccCcchhhhccCCCCCCceEEecccCcccceeccccccccCccccceeeeccccee
Q 020456 155 NFTENIIEMLMLWSLTIENCPNMETFVSNSVVHVTTDNKKPQKLTLEENFLLADQVQPLFDEKVGEEVKGCIVFERMNYL 234 (326)
Q Consensus 155 ~~~~~~~~~~~L~~L~l~~C~~l~~~~~~~~~~~~~~~~~L~~L~i~~~c~~l~~~~~~~~~~~~~~~~~~~~l~~L~~L 234 (326)
. ......+|++|++++| +++.++ ......++ +|+.|++ .++. ++.+.... ...+++|+.|
T Consensus 218 ~---~~~~~~~L~~L~l~~n-~l~~~~-~~~~~~l~---~L~~L~L-s~n~-l~~~~~~~----------~~~l~~L~~L 277 (477)
T 2id5_A 218 P---NCLYGLNLTSLSITHC-NLTAVP-YLAVRHLV---YLRFLNL-SYNP-ISTIEGSM----------LHELLRLQEI 277 (477)
T ss_dssp T---TTTTTCCCSEEEEESS-CCCSCC-HHHHTTCT---TCCEEEC-CSSC-CCEECTTS----------CTTCTTCCEE
T ss_pred c---ccccCccccEEECcCC-cccccC-HHHhcCcc---ccCeeEC-CCCc-CCccChhh----------ccccccCCEE
Confidence 5 3334457888888876 455553 22333455 8888888 7665 44433221 3356788999
Q ss_pred ecccCCCcceecCCCccccCCcccEEEeccCCccccccC-CCCCCCCccEEEecccc
Q 020456 235 TLDCLPSLTSFCLGNYALEFPSLEQVVVRQCPKMKIFSQ-GVLDTPMLNKVNVTEEE 290 (326)
Q Consensus 235 ~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~-~~~~~~~L~~L~l~~c~ 290 (326)
++.++ .++.+...... .+++|++|+++++ .++.++. .+..+++|++|++++++
T Consensus 278 ~L~~n-~l~~~~~~~~~-~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 278 QLVGG-QLAVVEPYAFR-GLNYLRVLNVSGN-QLTTLEESVFHSVGNLETLILDSNP 331 (477)
T ss_dssp ECCSS-CCSEECTTTBT-TCTTCCEEECCSS-CCSCCCGGGBSCGGGCCEEECCSSC
T ss_pred ECCCC-ccceECHHHhc-CcccCCEEECCCC-cCceeCHhHcCCCcccCEEEccCCC
Confidence 98885 45555433332 6889999999776 5555665 34568899999998775
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.5e-12 Score=122.87 Aligned_cols=236 Identities=18% Similarity=0.196 Sum_probs=131.0
Q ss_pred cCCcCCCCeeEEEecccCCcccceecCCCchhhhhhhhccccCCCccEEEcccCCCcccccccCCCCCCCCCCccEEEEe
Q 020456 6 QGIVSTPKLHEVQVTEKNEDELRHWEGNLNSTIQKCYEEMIGFCDIEYLQLSDFPCLKEIWHGQALPVSFFNNLEELEVD 85 (326)
Q Consensus 6 ~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~L~~L~l~ 85 (326)
..+.++++|++|++.+.. +...... .+..+++|++|++.++. +..++... ...+++|++|+++
T Consensus 50 ~~~~~l~~L~~L~L~~n~---i~~~~~~----------~~~~l~~L~~L~L~~n~-l~~~~~~~---~~~l~~L~~L~Ls 112 (477)
T 2id5_A 50 DEFASFPHLEELELNENI---VSAVEPG----------AFNNLFNLRTLGLRSNR-LKLIPLGV---FTGLSNLTKLDIS 112 (477)
T ss_dssp TTTTTCTTCCEEECTTSC---CCEECTT----------TTTTCTTCCEEECCSSC-CCSCCTTS---STTCTTCCEEECT
T ss_pred hHccCCCCCCEEECCCCc---cCEeChh----------hhhCCccCCEEECCCCc-CCccCccc---ccCCCCCCEEECC
Confidence 356789999999998322 2222111 13347888888887654 44433322 1456788888888
Q ss_pred cCCCCCcCCchhHHhhCCCCCEEEEccCcCcceeccccccccccCcCCCCCCCccEEecCCCccccccccc---------
Q 020456 86 DCTNMSSAIPANLLRCLNNLRCLEVRNCDSIEEVLHLEELNADKEHISPLFPKLSELRLIDLPKLKRFCNF--------- 156 (326)
Q Consensus 86 ~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~--------- 156 (326)
++. +....+.. +..+++|++|+++++. +..+.+. ....+++|+.|++.++. ++.++..
T Consensus 113 ~n~-i~~~~~~~-~~~l~~L~~L~l~~n~-l~~~~~~---------~~~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~ 179 (477)
T 2id5_A 113 ENK-IVILLDYM-FQDLYNLKSLEVGDND-LVYISHR---------AFSGLNSLEQLTLEKCN-LTSIPTEALSHLHGLI 179 (477)
T ss_dssp TSC-CCEECTTT-TTTCTTCCEEEECCTT-CCEECTT---------SSTTCTTCCEEEEESCC-CSSCCHHHHTTCTTCC
T ss_pred CCc-cccCChhH-ccccccCCEEECCCCc-cceeChh---------hccCCCCCCEEECCCCc-CcccChhHhcccCCCc
Confidence 874 44544432 5677888888887753 3322110 01123455555555542 3322210
Q ss_pred -------------cccccccccccEEeEecCCCCCccCcchhhhccCCCCCCceEEecccCcccceeccccccccCcccc
Q 020456 157 -------------TENIIEMLMLWSLTIENCPNMETFVSNSVVHVTTDNKKPQKLTLEENFLLADQVQPLFDEKVGEEVK 223 (326)
Q Consensus 157 -------------~~~~~~~~~L~~L~l~~C~~l~~~~~~~~~~~~~~~~~L~~L~i~~~c~~l~~~~~~~~~~~~~~~~ 223 (326)
...+..+++|++|++++|+.+..+++.. .. .. +|++|++ .+|. ++.+.. .
T Consensus 180 ~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~-~~---~L~~L~l-~~n~-l~~~~~----------~ 242 (477)
T 2id5_A 180 VLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNC-LY-GL---NLTSLSI-THCN-LTAVPY----------L 242 (477)
T ss_dssp EEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTT-TT-TC---CCSEEEE-ESSC-CCSCCH----------H
T ss_pred EEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCccc-cc-Cc---cccEEEC-cCCc-ccccCH----------H
Confidence 0023344455555555554444432211 11 11 4555555 4443 222211 1
Q ss_pred ceeeecccceeecccCCCcceecCCCccccCCcccEEEeccCCccccccCCCCCCCCccEEEecccc
Q 020456 224 GCIVFERMNYLTLDCLPSLTSFCLGNYALEFPSLEQVVVRQCPKMKIFSQGVLDTPMLNKVNVTEEE 290 (326)
Q Consensus 224 ~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~~L~~L~l~~c~ 290 (326)
....+++|++|++.++. ++.++..... .+++|++|.++++.--...|..+..+++|++|++++|.
T Consensus 243 ~~~~l~~L~~L~Ls~n~-l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 307 (477)
T 2id5_A 243 AVRHLVYLRFLNLSYNP-ISTIEGSMLH-ELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQ 307 (477)
T ss_dssp HHTTCTTCCEEECCSSC-CCEECTTSCT-TCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSC
T ss_pred HhcCccccCeeECCCCc-CCccChhhcc-ccccCCEEECCCCccceECHHHhcCcccCCEEECCCCc
Confidence 13346788899998865 5666554332 78899999998775444345566788999999999883
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=8.1e-13 Score=128.27 Aligned_cols=61 Identities=15% Similarity=0.060 Sum_probs=36.3
Q ss_pred eecccceeecccCCCcceecCCCccccCCcccEEEeccCCccccccCCCCCCC-CccEEEecccc
Q 020456 227 VFERMNYLTLDCLPSLTSFCLGNYALEFPSLEQVVVRQCPKMKIFSQGVLDTP-MLNKVNVTEEE 290 (326)
Q Consensus 227 ~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~-~L~~L~l~~c~ 290 (326)
.+++|++|++.++.-....+.... .+++|++|+++++. ++.+|..+..++ +|+++++++++
T Consensus 495 ~l~~L~~L~Ls~N~l~~~~~~~~~--~l~~L~~L~l~~N~-l~~~p~~~~~l~~~L~~l~l~~N~ 556 (606)
T 3vq2_A 495 TLHRLQLLNMSHNNLLFLDSSHYN--QLYSLSTLDCSFNR-IETSKGILQHFPKSLAFFNLTNNS 556 (606)
T ss_dssp TCTTCCEEECCSSCCSCEEGGGTT--TCTTCCEEECTTSC-CCCEESCGGGSCTTCCEEECCSCC
T ss_pred ccccCCEEECCCCcCCCcCHHHcc--CCCcCCEEECCCCc-CcccCHhHhhhcccCcEEEccCCC
Confidence 456677777776633222232222 56677777776664 556776655555 47777777654
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=1.1e-13 Score=129.75 Aligned_cols=85 Identities=12% Similarity=0.031 Sum_probs=48.1
Q ss_pred eecccceeecccCCCcceecCCCccccCCcccEEEeccCCccccccCCCCCCCCccEEEeccccCCCCccccccCchHHH
Q 020456 227 VFERMNYLTLDCLPSLTSFCLGNYALEFPSLEQVVVRQCPKMKIFSQGVLDTPMLNKVNVTEEEKDDDDEGCWEGNLNDT 306 (326)
Q Consensus 227 ~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~ 306 (326)
.+++|++|++.++ .++.++..... .+++|++|+++++.--...|..+..+++|++|++++|.-. ......+..+++
T Consensus 321 ~l~~L~~L~Ls~N-~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~--~~~~~~~~~l~~ 396 (455)
T 3v47_A 321 GLTHLLKLNLSQN-FLGSIDSRMFE-NLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLK--SVPDGIFDRLTS 396 (455)
T ss_dssp TCTTCCEEECCSS-CCCEECGGGGT-TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCS--CCCTTTTTTCTT
T ss_pred CcccCCEEECCCC-ccCCcChhHhc-CcccCCEEECCCCcccccChhhccccccccEEECCCCccc--cCCHhHhccCCc
Confidence 3466677777665 33444332221 5678888888776433333556667788888888876322 111222334456
Q ss_pred HHHHHHhhh
Q 020456 307 IKQLFNEIV 315 (326)
Q Consensus 307 l~~l~i~~~ 315 (326)
|+.+.+++.
T Consensus 397 L~~L~l~~N 405 (455)
T 3v47_A 397 LQKIWLHTN 405 (455)
T ss_dssp CCEEECCSS
T ss_pred ccEEEccCC
Confidence 666666554
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.46 E-value=2.2e-13 Score=131.13 Aligned_cols=133 Identities=14% Similarity=0.147 Sum_probs=80.3
Q ss_pred CCCccEEecCCCccccccccccccccccccccEEeEecCCCCCccCcchhhhccCCCCCCceEEecccCcccceeccccc
Q 020456 136 FPKLSELRLIDLPKLKRFCNFTENIIEMLMLWSLTIENCPNMETFVSNSVVHVTTDNKKPQKLTLEENFLLADQVQPLFD 215 (326)
Q Consensus 136 ~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~L~~L~l~~C~~l~~~~~~~~~~~~~~~~~L~~L~i~~~c~~l~~~~~~~~ 215 (326)
+++|+.|++.++. +....... .+..+++|++|++++|. +....+.. ...++ +|++|++ .+|.-.....+.
T Consensus 395 l~~L~~L~l~~n~-l~~~~~~~-~~~~l~~L~~L~l~~n~-l~~~~~~~-~~~l~---~L~~L~l-~~n~l~~~~~p~-- 464 (570)
T 2z63_A 395 LEQLEHLDFQHSN-LKQMSEFS-VFLSLRNLIYLDISHTH-TRVAFNGI-FNGLS---SLEVLKM-AGNSFQENFLPD-- 464 (570)
T ss_dssp CTTCCEEECTTSE-EESCTTSC-TTTTCTTCCEEECTTSC-CEECCTTT-TTTCT---TCCEEEC-TTCEEGGGEECS--
T ss_pred cCCCCEEEccCCc-cccccchh-hhhcCCCCCEEeCcCCc-ccccchhh-hhcCC---cCcEEEC-cCCcCccccchh--
Confidence 4577777777654 22221100 34567778888887763 33332222 22344 7888888 777643211111
Q ss_pred cccCccccceeeecccceeecccCCCccee-cCCCccccCCcccEEEeccCCccccccC-CCCCCCCccEEEecccc
Q 020456 216 EKVGEEVKGCIVFERMNYLTLDCLPSLTSF-CLGNYALEFPSLEQVVVRQCPKMKIFSQ-GVLDTPMLNKVNVTEEE 290 (326)
Q Consensus 216 ~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~-~~~~~~~~~~~L~~L~i~~c~~l~~l~~-~~~~~~~L~~L~l~~c~ 290 (326)
....+++|++|++.+|. ++.+ +.... .+++|++|+++++ .++.++. .+..+++|++|++++++
T Consensus 465 --------~~~~l~~L~~L~l~~n~-l~~~~~~~~~--~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~ 529 (570)
T 2z63_A 465 --------IFTELRNLTFLDLSQCQ-LEQLSPTAFN--SLSSLQVLNMASN-QLKSVPDGIFDRLTSLQKIWLHTNP 529 (570)
T ss_dssp --------CCTTCTTCCEEECTTSC-CCEECTTTTT--TCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred --------hhhcccCCCEEECCCCc-cccCChhhhh--cccCCCEEeCCCC-cCCCCCHHHhhcccCCcEEEecCCc
Confidence 13456889999998875 4444 33332 6789999999887 4555554 55678899999998874
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=1.6e-13 Score=133.17 Aligned_cols=156 Identities=10% Similarity=-0.009 Sum_probs=90.8
Q ss_pred CCCccEEecCCCccccccccccccccccccccEEeEecCCCCCccCcchhhhccCCCCCCceEEecccCcccceeccccc
Q 020456 136 FPKLSELRLIDLPKLKRFCNFTENIIEMLMLWSLTIENCPNMETFVSNSVVHVTTDNKKPQKLTLEENFLLADQVQPLFD 215 (326)
Q Consensus 136 ~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~L~~L~l~~C~~l~~~~~~~~~~~~~~~~~L~~L~i~~~c~~l~~~~~~~~ 215 (326)
+++|+.|+++++.-....+. ..+..+++|+.|++++|. +....+..+ ..++ +|++|++ .+|.-...+.+.
T Consensus 398 l~~L~~L~l~~n~l~~~~~~--~~~~~l~~L~~L~l~~n~-l~~~~~~~~-~~l~---~L~~L~l-~~n~l~~~~~~~-- 467 (606)
T 3vq2_A 398 LEELQHLDFQHSTLKRVTEF--SAFLSLEKLLYLDISYTN-TKIDFDGIF-LGLT---SLNTLKM-AGNSFKDNTLSN-- 467 (606)
T ss_dssp CTTCCEEECTTSEEESTTTT--TTTTTCTTCCEEECTTSC-CEECCTTTT-TTCT---TCCEEEC-TTCEEGGGEECS--
T ss_pred CCCCCeeECCCCccCCccCh--hhhhccccCCEEECcCCC-CCccchhhh-cCCC---CCCEEEC-CCCcCCCcchHH--
Confidence 45666676666542222220 034556777777777764 333322222 2344 7777777 666533322221
Q ss_pred cccCccccceeeecccceeecccCCCcceecCCCccccCCcccEEEeccCCccccccCCCCCCCCccEEEeccccCCCCc
Q 020456 216 EKVGEEVKGCIVFERMNYLTLDCLPSLTSFCLGNYALEFPSLEQVVVRQCPKMKIFSQGVLDTPMLNKVNVTEEEKDDDD 295 (326)
Q Consensus 216 ~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~~L~~L~l~~c~~~~~~ 295 (326)
....+++|++|++.++. ++.++..... .+++|++|+++++.-....|..+..+++|++|++++|.-.
T Consensus 468 --------~~~~l~~L~~L~Ls~n~-l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~--- 534 (606)
T 3vq2_A 468 --------VFANTTNLTFLDLSKCQ-LEQISWGVFD-TLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE--- 534 (606)
T ss_dssp --------CCTTCTTCCEEECTTSC-CCEECTTTTT-TCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC---
T ss_pred --------hhccCCCCCEEECCCCc-CCccChhhhc-ccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc---
Confidence 13456889999999874 4555433322 7889999999888544445677778899999999988422
Q ss_pred cccccCchHH-HHHHHHHhh
Q 020456 296 EGCWEGNLND-TIKQLFNEI 314 (326)
Q Consensus 296 ~~~~~~~~~~-~l~~l~i~~ 314 (326)
.++..+...+ +|+.+.+++
T Consensus 535 ~~p~~~~~l~~~L~~l~l~~ 554 (606)
T 3vq2_A 535 TSKGILQHFPKSLAFFNLTN 554 (606)
T ss_dssp CEESCGGGSCTTCCEEECCS
T ss_pred ccCHhHhhhcccCcEEEccC
Confidence 2332233322 466666554
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=2e-13 Score=136.46 Aligned_cols=37 Identities=11% Similarity=0.181 Sum_probs=18.1
Q ss_pred cCCcccEEEeccCCccccccCCCCCCCCccEEEeccc
Q 020456 253 EFPSLEQVVVRQCPKMKIFSQGVLDTPMLNKVNVTEE 289 (326)
Q Consensus 253 ~~~~L~~L~i~~c~~l~~l~~~~~~~~~L~~L~l~~c 289 (326)
.+++|+.|+++++.--..+|..+..+++|++|++++|
T Consensus 678 ~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N 714 (768)
T 3rgz_A 678 DLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNN 714 (768)
T ss_dssp GCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSS
T ss_pred CCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCC
Confidence 3445555555444433344444444555555555554
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=1e-12 Score=127.61 Aligned_cols=88 Identities=24% Similarity=0.272 Sum_probs=45.5
Q ss_pred CcCCCCeeEEEecccCCcccceecCCCchhhhhhhhccccCCCccEEEcccCCCcccccccCCCCCCCCCCccEEEEecC
Q 020456 8 IVSTPKLHEVQVTEKNEDELRHWEGNLNSTIQKCYEEMIGFCDIEYLQLSDFPCLKEIWHGQALPVSFFNNLEELEVDDC 87 (326)
Q Consensus 8 ~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~L~~L~l~~c 87 (326)
+..+++|++|++.+.....+.. .+..+++|++|++.++.... +.+.. ...+++|++|++.+|
T Consensus 274 ~~~l~~L~~L~l~~n~l~~lp~--------------~l~~l~~L~~L~l~~n~l~~-~~~~~---~~~l~~L~~L~l~~n 335 (606)
T 3t6q_A 274 FHCFSGLQELDLTATHLSELPS--------------GLVGLSTLKKLVLSANKFEN-LCQIS---ASNFPSLTHLSIKGN 335 (606)
T ss_dssp TTTCTTCSEEECTTSCCSCCCS--------------SCCSCTTCCEEECTTCCCSB-GGGGC---GGGCTTCSEEECCSC
T ss_pred hccccCCCEEeccCCccCCCCh--------------hhcccccCCEEECccCCcCc-Cchhh---hhccCcCCEEECCCC
Confidence 5678888888888433222211 12236667777766554322 11111 134566666666666
Q ss_pred CCCCcCCchhHHhhCCCCCEEEEccCc
Q 020456 88 TNMSSAIPANLLRCLNNLRCLEVRNCD 114 (326)
Q Consensus 88 ~~l~~~~~~~~~~~l~~L~~L~l~~c~ 114 (326)
.....+++ ..+..+++|++|+++++.
T Consensus 336 ~~~~~~~~-~~~~~l~~L~~L~l~~n~ 361 (606)
T 3t6q_A 336 TKRLELGT-GCLENLENLRELDLSHDD 361 (606)
T ss_dssp SSCCBCCS-STTTTCTTCCEEECCSSC
T ss_pred Ccccccch-hhhhccCcCCEEECCCCc
Confidence 43222222 224556666666666543
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=99.45 E-value=9.6e-13 Score=117.52 Aligned_cols=228 Identities=12% Similarity=0.027 Sum_probs=138.3
Q ss_pred cccCCCccEEEcccCCCcc-cccccCCCCCCCCCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccCcCcceecccc
Q 020456 45 MIGFCDIEYLQLSDFPCLK-EIWHGQALPVSFFNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNCDSIEEVLHLE 123 (326)
Q Consensus 45 ~~~~~~L~~L~l~~~~~l~-~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~ 123 (326)
+..+++|++|++.++..+. .++... ..+++|++|+++++. ++...+.. +..+++|++|+++++.....++..
T Consensus 72 l~~l~~L~~L~L~~~n~l~~~~p~~l----~~l~~L~~L~Ls~n~-l~~~~p~~-~~~l~~L~~L~Ls~N~l~~~~p~~- 144 (313)
T 1ogq_A 72 LANLPYLNFLYIGGINNLVGPIPPAI----AKLTQLHYLYITHTN-VSGAIPDF-LSQIKTLVTLDFSYNALSGTLPPS- 144 (313)
T ss_dssp GGGCTTCSEEEEEEETTEESCCCGGG----GGCTTCSEEEEEEEC-CEEECCGG-GGGCTTCCEEECCSSEEESCCCGG-
T ss_pred HhCCCCCCeeeCCCCCcccccCChhH----hcCCCCCEEECcCCe-eCCcCCHH-HhCCCCCCEEeCCCCccCCcCChH-
Confidence 4457888888888644444 323222 567888888888874 44334432 677888888888876422122111
Q ss_pred ccccccCcCCCCCCCccEEecCCCccccccccccccccccc-cccEEeEecCCCCCccCcchhhhccCCCCCCceEEecc
Q 020456 124 ELNADKEHISPLFPKLSELRLIDLPKLKRFCNFTENIIEML-MLWSLTIENCPNMETFVSNSVVHVTTDNKKPQKLTLEE 202 (326)
Q Consensus 124 ~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~-~L~~L~l~~C~~l~~~~~~~~~~~~~~~~~L~~L~i~~ 202 (326)
...+++|+.|+++++.--..++. .+..++ +|+.|+++++ .+....+..+.. + .|++|++ .
T Consensus 145 ---------~~~l~~L~~L~L~~N~l~~~~p~---~l~~l~~~L~~L~L~~N-~l~~~~~~~~~~-l----~L~~L~L-s 205 (313)
T 1ogq_A 145 ---------ISSLPNLVGITFDGNRISGAIPD---SYGSFSKLFTSMTISRN-RLTGKIPPTFAN-L----NLAFVDL-S 205 (313)
T ss_dssp ---------GGGCTTCCEEECCSSCCEEECCG---GGGCCCTTCCEEECCSS-EEEEECCGGGGG-C----CCSEEEC-C
T ss_pred ---------HhcCCCCCeEECcCCcccCcCCH---HHhhhhhcCcEEECcCC-eeeccCChHHhC-C----cccEEEC-c
Confidence 11346888888887653335554 556666 8888888776 344333333332 2 5888888 7
Q ss_pred cCcccceeccccccccCccccceeeecccceeecccCCCcceecCCCccccCCcccEEEeccCCccccccCCCCCCCCcc
Q 020456 203 NFLLADQVQPLFDEKVGEEVKGCIVFERMNYLTLDCLPSLTSFCLGNYALEFPSLEQVVVRQCPKMKIFSQGVLDTPMLN 282 (326)
Q Consensus 203 ~c~~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~~L~ 282 (326)
++.- +...+. ....+++|+.|++.++.--..++. .. .+++|++|+++++.--..+|..+..+++|+
T Consensus 206 ~N~l-~~~~~~----------~~~~l~~L~~L~L~~N~l~~~~~~-~~--~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~ 271 (313)
T 1ogq_A 206 RNML-EGDASV----------LFGSDKNTQKIHLAKNSLAFDLGK-VG--LSKNLNGLDLRNNRIYGTLPQGLTQLKFLH 271 (313)
T ss_dssp SSEE-EECCGG----------GCCTTSCCSEEECCSSEECCBGGG-CC--CCTTCCEEECCSSCCEECCCGGGGGCTTCC
T ss_pred CCcc-cCcCCH----------HHhcCCCCCEEECCCCceeeecCc-cc--ccCCCCEEECcCCcccCcCChHHhcCcCCC
Confidence 6642 222211 134567888999888653323332 22 578999999988765546777777889999
Q ss_pred EEEeccccCCCCccccccCchHHHHHHHHHhhh
Q 020456 283 KVNVTEEEKDDDDEGCWEGNLNDTIKQLFNEIV 315 (326)
Q Consensus 283 ~L~l~~c~~~~~~~~~~~~~~~~~l~~l~i~~~ 315 (326)
+|++++|.-. +.++.. ..+.+|+.+.+.+.
T Consensus 272 ~L~Ls~N~l~--~~ip~~-~~l~~L~~l~l~~N 301 (313)
T 1ogq_A 272 SLNVSFNNLC--GEIPQG-GNLQRFDVSAYANN 301 (313)
T ss_dssp EEECCSSEEE--EECCCS-TTGGGSCGGGTCSS
T ss_pred EEECcCCccc--ccCCCC-ccccccChHHhcCC
Confidence 9999887321 122322 34556666666554
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=99.45 E-value=4.2e-12 Score=114.67 Aligned_cols=56 Identities=11% Similarity=0.210 Sum_probs=29.4
Q ss_pred ecccceeecccCCCcceecCCCccccCCcccEEEeccCCccccccCCCCCCCCccEEEeccc
Q 020456 228 FERMNYLTLDCLPSLTSFCLGNYALEFPSLEQVVVRQCPKMKIFSQGVLDTPMLNKVNVTEE 289 (326)
Q Consensus 228 l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~~L~~L~l~~c 289 (326)
+++|++|++.++ .++.++. ...+++|++|++++| .++.++ .+..+++|++|++++|
T Consensus 242 l~~L~~L~l~~n-~l~~~~~---~~~l~~L~~L~l~~n-~l~~~~-~~~~l~~L~~L~L~~n 297 (347)
T 4fmz_A 242 LSQLTWLEIGTN-QISDINA---VKDLTKLKMLNVGSN-QISDIS-VLNNLSQLNSLFLNNN 297 (347)
T ss_dssp CTTCCEEECCSS-CCCCCGG---GTTCTTCCEEECCSS-CCCCCG-GGGGCTTCSEEECCSS
T ss_pred CCCCCEEECCCC-ccCCChh---HhcCCCcCEEEccCC-ccCCCh-hhcCCCCCCEEECcCC
Confidence 455555555554 2333321 114566666666665 344343 2334667777777766
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=6.2e-12 Score=117.72 Aligned_cols=111 Identities=14% Similarity=0.183 Sum_probs=69.5
Q ss_pred ccccccccEEeEecCCCCCccCcchhhhccCCCCCCceEEecccCcccceeccccccccCccccceeeecccceeecccC
Q 020456 160 IIEMLMLWSLTIENCPNMETFVSNSVVHVTTDNKKPQKLTLEENFLLADQVQPLFDEKVGEEVKGCIVFERMNYLTLDCL 239 (326)
Q Consensus 160 ~~~~~~L~~L~l~~C~~l~~~~~~~~~~~~~~~~~L~~L~i~~~c~~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c 239 (326)
+..+++|++|++++| .+....+..+. .++ +|++|++ .++. ++.+.+. ....+++|++|++.++
T Consensus 295 ~~~l~~L~~L~Ls~n-~l~~~~~~~~~-~l~---~L~~L~L-s~N~-l~~~~~~----------~~~~l~~L~~L~Ls~N 357 (455)
T 3v47_A 295 FSHFTDLEQLTLAQN-EINKIDDNAFW-GLT---HLLKLNL-SQNF-LGSIDSR----------MFENLDKLEVLDLSYN 357 (455)
T ss_dssp TTTCTTCCEEECTTS-CCCEECTTTTT-TCT---TCCEEEC-CSSC-CCEECGG----------GGTTCTTCCEEECCSS
T ss_pred cccCCCCCEEECCCC-cccccChhHhc-Ccc---cCCEEEC-CCCc-cCCcChh----------HhcCcccCCEEECCCC
Confidence 344556666666554 33333222222 233 6777777 6654 3333221 1345789999999997
Q ss_pred CCcceecCCCccccCCcccEEEeccCCccccccCC-CCCCCCccEEEecccc
Q 020456 240 PSLTSFCLGNYALEFPSLEQVVVRQCPKMKIFSQG-VLDTPMLNKVNVTEEE 290 (326)
Q Consensus 240 ~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~-~~~~~~L~~L~l~~c~ 290 (326)
. ++.+...... .+++|++|+++++ .++.+|.. +..+++|++|++++++
T Consensus 358 ~-l~~~~~~~~~-~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 358 H-IRALGDQSFL-GLPNLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNP 406 (455)
T ss_dssp C-CCEECTTTTT-TCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred c-ccccChhhcc-ccccccEEECCCC-ccccCCHhHhccCCcccEEEccCCC
Confidence 4 5555433322 7899999999885 56667763 4578999999999884
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.44 E-value=1.2e-12 Score=116.96 Aligned_cols=154 Identities=10% Similarity=0.034 Sum_probs=107.2
Q ss_pred CCCCccEEecCCCccccccccccccccccccccEEeEecCCCCCccCcchhhhccCCCCCCceEEecccCcccceecccc
Q 020456 135 LFPKLSELRLIDLPKLKRFCNFTENIIEMLMLWSLTIENCPNMETFVSNSVVHVTTDNKKPQKLTLEENFLLADQVQPLF 214 (326)
Q Consensus 135 ~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~L~~L~l~~C~~l~~~~~~~~~~~~~~~~~L~~L~i~~~c~~l~~~~~~~ 214 (326)
.+++|+.|+++++. ++.++.. .+..+++|+.|+++++ .+....+..+...+. +|++|++ .++. ++.+...
T Consensus 118 ~~~~L~~L~l~~N~-l~~~~~~--~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~l~---~L~~L~L-~~N~-l~~~~~~- 187 (317)
T 3o53_A 118 RGQGKKNIYLANNK-ITMLRDL--DEGCRSRVQYLDLKLN-EIDTVNFAELAASSD---TLEHLNL-QYNF-IYDVKGQ- 187 (317)
T ss_dssp CCSSCEEEECCSSC-CCSGGGB--CTGGGSSEEEEECTTS-CCCEEEGGGGGGGTT---TCCEEEC-TTSC-CCEEECC-
T ss_pred ccCCCCEEECCCCC-CCCccch--hhhccCCCCEEECCCC-CCCcccHHHHhhccC---cCCEEEC-CCCc-Ccccccc-
Confidence 36789999998864 4444321 4567899999999886 566654555544556 9999999 8776 4444222
Q ss_pred ccccCccccceeeecccceeecccCCCcceecCCCccccCCcccEEEeccCCccccccCCCCCCCCccEEEeccccCCCC
Q 020456 215 DEKVGEEVKGCIVFERMNYLTLDCLPSLTSFCLGNYALEFPSLEQVVVRQCPKMKIFSQGVLDTPMLNKVNVTEEEKDDD 294 (326)
Q Consensus 215 ~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~~L~~L~l~~c~~~~~ 294 (326)
..+++|++|++.++ .++.++.... .+++|++|+++++ .++.+|..+..+++|++|++++++-..
T Consensus 188 -----------~~l~~L~~L~Ls~N-~l~~l~~~~~--~l~~L~~L~L~~N-~l~~l~~~~~~l~~L~~L~l~~N~~~~- 251 (317)
T 3o53_A 188 -----------VVFAKLKTLDLSSN-KLAFMGPEFQ--SAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGNGFHC- 251 (317)
T ss_dssp -----------CCCTTCCEEECCSS-CCCEECGGGG--GGTTCSEEECTTS-CCCEECTTCCCCTTCCEEECTTCCCBH-
T ss_pred -----------cccccCCEEECCCC-cCCcchhhhc--ccCcccEEECcCC-cccchhhHhhcCCCCCEEEccCCCccC-
Confidence 23689999999996 5666765433 7899999999887 677788888889999999999884331
Q ss_pred ccccccCchHHHHHHHHHhh
Q 020456 295 DEGCWEGNLNDTIKQLFNEI 314 (326)
Q Consensus 295 ~~~~~~~~~~~~l~~l~i~~ 314 (326)
+..+.....+..|+.+.+.+
T Consensus 252 ~~~~~~~~~~~~L~~l~l~~ 271 (317)
T 3o53_A 252 GTLRDFFSKNQRVQTVAKQT 271 (317)
T ss_dssp HHHHHHHHTCHHHHHHHHHH
T ss_pred cCHHHHHhccccceEEECCC
Confidence 12222233356777777663
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=9.5e-12 Score=111.66 Aligned_cols=212 Identities=18% Similarity=0.186 Sum_probs=114.7
Q ss_pred CCCccEEEcccCCCcccccccCCCCCCCCCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccCcCcceeccccc---
Q 020456 48 FCDIEYLQLSDFPCLKEIWHGQALPVSFFNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNCDSIEEVLHLEE--- 124 (326)
Q Consensus 48 ~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~--- 124 (326)
.++|+.|+++++. +..++... ...+++|++|++++|. ++.+.+.. +..+++|++|+++++. ++.++....
T Consensus 51 ~~~l~~L~L~~n~-i~~~~~~~---~~~l~~L~~L~L~~n~-l~~~~~~~-~~~l~~L~~L~Ls~n~-l~~l~~~~~~~L 123 (330)
T 1xku_A 51 PPDTALLDLQNNK-ITEIKDGD---FKNLKNLHTLILINNK-ISKISPGA-FAPLVKLERLYLSKNQ-LKELPEKMPKTL 123 (330)
T ss_dssp CTTCCEEECCSSC-CCCBCTTT---TTTCTTCCEEECCSSC-CCCBCTTT-TTTCTTCCEEECCSSC-CSBCCSSCCTTC
T ss_pred CCCCeEEECCCCc-CCEeChhh---hccCCCCCEEECCCCc-CCeeCHHH-hcCCCCCCEEECCCCc-CCccChhhcccc
Confidence 4677888887654 44433322 2456788888888773 55554433 5677888888887754 333321100
Q ss_pred --c-------ccccCcCCCCCCCccEEecCCCccccccccccccccccccccEEeEecCCCCCccCcchhhhccCCCCCC
Q 020456 125 --L-------NADKEHISPLFPKLSELRLIDLPKLKRFCNFTENIIEMLMLWSLTIENCPNMETFVSNSVVHVTTDNKKP 195 (326)
Q Consensus 125 --~-------~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~L~~L~l~~C~~l~~~~~~~~~~~~~~~~~L 195 (326)
+ ..........+++|+.|+++++. ++........+..+++|+.|+++++ .++.++ ..+. . +|
T Consensus 124 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l~~L~~L~l~~n-~l~~l~-~~~~---~---~L 194 (330)
T 1xku_A 124 QELRVHENEITKVRKSVFNGLNQMIVVELGTNP-LKSSGIENGAFQGMKKLSYIRIADT-NITTIP-QGLP---P---SL 194 (330)
T ss_dssp CEEECCSSCCCBBCHHHHTTCTTCCEEECCSSC-CCGGGBCTTGGGGCTTCCEEECCSS-CCCSCC-SSCC---T---TC
T ss_pred cEEECCCCcccccCHhHhcCCccccEEECCCCc-CCccCcChhhccCCCCcCEEECCCC-ccccCC-cccc---c---cC
Confidence 0 00000001123455555554432 1110000113445566666666554 233332 1111 2 66
Q ss_pred ceEEecccCcccceeccccccccCccccceeeecccceeecccCCCcceecCCCccccCCcccEEEeccCCccccccCCC
Q 020456 196 QKLTLEENFLLADQVQPLFDEKVGEEVKGCIVFERMNYLTLDCLPSLTSFCLGNYALEFPSLEQVVVRQCPKMKIFSQGV 275 (326)
Q Consensus 196 ~~L~i~~~c~~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~ 275 (326)
++|++ .++. ++.+.+. ....+++|++|++.++. ++.++..... .+++|++|+++++ .++.+|.++
T Consensus 195 ~~L~l-~~n~-l~~~~~~----------~~~~l~~L~~L~Ls~n~-l~~~~~~~~~-~l~~L~~L~L~~N-~l~~lp~~l 259 (330)
T 1xku_A 195 TELHL-DGNK-ITKVDAA----------SLKGLNNLAKLGLSFNS-ISAVDNGSLA-NTPHLRELHLNNN-KLVKVPGGL 259 (330)
T ss_dssp SEEEC-TTSC-CCEECTG----------GGTTCTTCCEEECCSSC-CCEECTTTGG-GSTTCCEEECCSS-CCSSCCTTT
T ss_pred CEEEC-CCCc-CCccCHH----------HhcCCCCCCEEECCCCc-CceeChhhcc-CCCCCCEEECCCC-cCccCChhh
Confidence 66666 5554 3332211 13345788888888854 5555443322 6788999988777 566788877
Q ss_pred CCCCCccEEEecccc
Q 020456 276 LDTPMLNKVNVTEEE 290 (326)
Q Consensus 276 ~~~~~L~~L~l~~c~ 290 (326)
..+++|++|++++|.
T Consensus 260 ~~l~~L~~L~l~~N~ 274 (330)
T 1xku_A 260 ADHKYIQVVYLHNNN 274 (330)
T ss_dssp TTCSSCCEEECCSSC
T ss_pred ccCCCcCEEECCCCc
Confidence 788889999988874
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=99.43 E-value=5.8e-13 Score=118.97 Aligned_cols=238 Identities=13% Similarity=0.074 Sum_probs=155.7
Q ss_pred cccCCcCCCCeeEEEecccCCcccceecCCCchhhhhhhhccccCCCccEEEcccCCCcccccccCCCCCCCCCCccEEE
Q 020456 4 FSQGIVSTPKLHEVQVTEKNEDELRHWEGNLNSTIQKCYEEMIGFCDIEYLQLSDFPCLKEIWHGQALPVSFFNNLEELE 83 (326)
Q Consensus 4 ~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~L~~L~ 83 (326)
++..+..+++|++|++.+ ...+ .+.. ...+..+++|++|+++++.-...++... ..+++|++|+
T Consensus 68 ~~~~l~~l~~L~~L~L~~--~n~l---~~~~-------p~~l~~l~~L~~L~Ls~n~l~~~~p~~~----~~l~~L~~L~ 131 (313)
T 1ogq_A 68 IPSSLANLPYLNFLYIGG--INNL---VGPI-------PPAIAKLTQLHYLYITHTNVSGAIPDFL----SQIKTLVTLD 131 (313)
T ss_dssp CCGGGGGCTTCSEEEEEE--ETTE---ESCC-------CGGGGGCTTCSEEEEEEECCEEECCGGG----GGCTTCCEEE
T ss_pred cChhHhCCCCCCeeeCCC--CCcc---cccC-------ChhHhcCCCCCEEECcCCeeCCcCCHHH----hCCCCCCEEe
Confidence 344566777777777772 1111 1111 1124458999999999876544444333 5689999999
Q ss_pred EecCCCCCcCCchhHHhhCCCCCEEEEccCcCcceeccccccccccCcCCCCCCCccEEecCCCcccccccccccccccc
Q 020456 84 VDDCTNMSSAIPANLLRCLNNLRCLEVRNCDSIEEVLHLEELNADKEHISPLFPKLSELRLIDLPKLKRFCNFTENIIEM 163 (326)
Q Consensus 84 l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~ 163 (326)
++++. ++...+.. +..+++|++|+++++..-..++.. +....++|+.|+++++.--..++. .+..+
T Consensus 132 Ls~N~-l~~~~p~~-~~~l~~L~~L~L~~N~l~~~~p~~---------l~~l~~~L~~L~L~~N~l~~~~~~---~~~~l 197 (313)
T 1ogq_A 132 FSYNA-LSGTLPPS-ISSLPNLVGITFDGNRISGAIPDS---------YGSFSKLFTSMTISRNRLTGKIPP---TFANL 197 (313)
T ss_dssp CCSSE-EESCCCGG-GGGCTTCCEEECCSSCCEEECCGG---------GGCCCTTCCEEECCSSEEEEECCG---GGGGC
T ss_pred CCCCc-cCCcCChH-HhcCCCCCeEECcCCcccCcCCHH---------HhhhhhcCcEEECcCCeeeccCCh---HHhCC
Confidence 99985 54444443 778999999999997633233221 111223899999998754334444 45556
Q ss_pred ccccEEeEecCCCCCccCcchhhhccCCCCCCceEEecccCcccceeccccccccCccccceeeecccceeecccCCCcc
Q 020456 164 LMLWSLTIENCPNMETFVSNSVVHVTTDNKKPQKLTLEENFLLADQVQPLFDEKVGEEVKGCIVFERMNYLTLDCLPSLT 243 (326)
Q Consensus 164 ~~L~~L~l~~C~~l~~~~~~~~~~~~~~~~~L~~L~i~~~c~~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~ 243 (326)
+ |+.|+++++ .+....+.. ...++ +|+.|++ .++.-...+ +. ...+++|++|++.++.--.
T Consensus 198 ~-L~~L~Ls~N-~l~~~~~~~-~~~l~---~L~~L~L-~~N~l~~~~-~~-----------~~~l~~L~~L~Ls~N~l~~ 258 (313)
T 1ogq_A 198 N-LAFVDLSRN-MLEGDASVL-FGSDK---NTQKIHL-AKNSLAFDL-GK-----------VGLSKNLNGLDLRNNRIYG 258 (313)
T ss_dssp C-CSEEECCSS-EEEECCGGG-CCTTS---CCSEEEC-CSSEECCBG-GG-----------CCCCTTCCEEECCSSCCEE
T ss_pred c-ccEEECcCC-cccCcCCHH-HhcCC---CCCEEEC-CCCceeeec-Cc-----------ccccCCCCEEECcCCcccC
Confidence 5 999999986 444443333 33455 9999999 877632221 11 3356899999999976443
Q ss_pred eecCCCccccCCcccEEEeccCCccccccCCCCCCCCccEEEeccccCCC
Q 020456 244 SFCLGNYALEFPSLEQVVVRQCPKMKIFSQGVLDTPMLNKVNVTEEEKDD 293 (326)
Q Consensus 244 ~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~~L~~L~l~~c~~~~ 293 (326)
.++.... .+++|++|+++++.--..+|.. ..+++|+.+++++++...
T Consensus 259 ~~p~~l~--~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc 305 (313)
T 1ogq_A 259 TLPQGLT--QLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLC 305 (313)
T ss_dssp CCCGGGG--GCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEE
T ss_pred cCChHHh--cCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCcc
Confidence 5554333 7899999999888655567775 578899999998876443
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.41 E-value=4e-12 Score=116.80 Aligned_cols=60 Identities=18% Similarity=0.282 Sum_probs=28.5
Q ss_pred CCCccEEEcccCCCcccccccCCCCCCCCCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccC
Q 020456 48 FCDIEYLQLSDFPCLKEIWHGQALPVSFFNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNC 113 (326)
Q Consensus 48 ~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c 113 (326)
+++|++|++.++. +..+.... ...+++|++|++++|. ++..++. .++.+++|++|+++++
T Consensus 68 l~~L~~L~L~~n~-i~~~~~~~---~~~l~~L~~L~L~~n~-l~~~~~~-~~~~l~~L~~L~L~~n 127 (390)
T 3o6n_A 68 FRQVELLNLNDLQ-IEEIDTYA---FAYAHTIQKLYMGFNA-IRYLPPH-VFQNVPLLTVLVLERN 127 (390)
T ss_dssp CCCCSEEECTTSC-CCEECTTT---TTTCTTCCEEECCSSC-CCCCCTT-TTTTCTTCCEEECCSS
T ss_pred cccCcEEECCCCc-ccccChhh---ccCCCCcCEEECCCCC-CCcCCHH-HhcCCCCCCEEECCCC
Confidence 5566666665543 23222211 1345556666665553 3343332 1445555666655554
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=4.7e-12 Score=111.30 Aligned_cols=207 Identities=11% Similarity=0.041 Sum_probs=140.2
Q ss_pred CCCccEEEcccCCCcccccccCCCCCCCCCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccCcCcceecccccccc
Q 020456 48 FCDIEYLQLSDFPCLKEIWHGQALPVSFFNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNCDSIEEVLHLEELNA 127 (326)
Q Consensus 48 ~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~ 127 (326)
.++|++|+++++. +..+.... ...+++|++|+++++ .++.+.+.. +..+++|++|+++++..+..+.+.
T Consensus 31 ~~~l~~L~l~~n~-i~~~~~~~---~~~~~~L~~L~l~~n-~l~~~~~~~-~~~l~~L~~L~l~~n~~l~~~~~~----- 99 (285)
T 1ozn_A 31 PAASQRIFLHGNR-ISHVPAAS---FRACRNLTILWLHSN-VLARIDAAA-FTGLALLEQLDLSDNAQLRSVDPA----- 99 (285)
T ss_dssp CTTCSEEECTTSC-CCEECTTT---TTTCTTCCEEECCSS-CCCEECTTT-TTTCTTCCEEECCSCTTCCCCCTT-----
T ss_pred CCCceEEEeeCCc-CCccCHHH---cccCCCCCEEECCCC-ccceeCHhh-cCCccCCCEEeCCCCCCccccCHH-----
Confidence 5789999998755 44444322 256799999999998 466665443 678999999999988655544211
Q ss_pred ccCcCCCCCCCccEEecCCCccccccccccccccccccccEEeEecCCCCCccCcchhhhccCCCCCCceEEecccCccc
Q 020456 128 DKEHISPLFPKLSELRLIDLPKLKRFCNFTENIIEMLMLWSLTIENCPNMETFVSNSVVHVTTDNKKPQKLTLEENFLLA 207 (326)
Q Consensus 128 ~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~L~~L~l~~C~~l~~~~~~~~~~~~~~~~~L~~L~i~~~c~~l 207 (326)
....+++|+.|++.++. ++.+... .+..+++|++|+++++ .++.+.+.. ...++ +|++|++ .++. +
T Consensus 100 ----~~~~l~~L~~L~l~~n~-l~~~~~~--~~~~l~~L~~L~l~~n-~l~~~~~~~-~~~l~---~L~~L~l-~~n~-l 165 (285)
T 1ozn_A 100 ----TFHGLGRLHTLHLDRCG-LQELGPG--LFRGLAALQYLYLQDN-ALQALPDDT-FRDLG---NLTHLFL-HGNR-I 165 (285)
T ss_dssp ----TTTTCTTCCEEECTTSC-CCCCCTT--TTTTCTTCCEEECCSS-CCCCCCTTT-TTTCT---TCCEEEC-CSSC-C
T ss_pred ----HhcCCcCCCEEECCCCc-CCEECHh--HhhCCcCCCEEECCCC-cccccCHhH-hccCC---CccEEEC-CCCc-c
Confidence 11235799999999875 4443221 4667899999999986 466553322 33455 8999999 7764 4
Q ss_pred ceeccccccccCccccceeeecccceeecccCCCcceecCCCccccCCcccEEEeccCCccccccC-CCCCCCCccEEEe
Q 020456 208 DQVQPLFDEKVGEEVKGCIVFERMNYLTLDCLPSLTSFCLGNYALEFPSLEQVVVRQCPKMKIFSQ-GVLDTPMLNKVNV 286 (326)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~-~~~~~~~L~~L~l 286 (326)
+.+.... ...+++|++|++.++. ++.+...... .+++|++|+++++ .++.++. .+..+++|++|++
T Consensus 166 ~~~~~~~----------~~~l~~L~~L~l~~n~-l~~~~~~~~~-~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l 232 (285)
T 1ozn_A 166 SSVPERA----------FRGLHSLDRLLLHQNR-VAHVHPHAFR-DLGRLMTLYLFAN-NLSALPTEALAPLRALQYLRL 232 (285)
T ss_dssp CEECTTT----------TTTCTTCCEEECCSSC-CCEECTTTTT-TCTTCCEEECCSS-CCSCCCHHHHTTCTTCCEEEC
T ss_pred cccCHHH----------hcCccccCEEECCCCc-ccccCHhHcc-CcccccEeeCCCC-cCCcCCHHHcccCcccCEEec
Confidence 4443221 2346889999999975 5555332222 6889999999887 4555553 4557899999999
Q ss_pred ccccCC
Q 020456 287 TEEEKD 292 (326)
Q Consensus 287 ~~c~~~ 292 (326)
++++-.
T Consensus 233 ~~N~~~ 238 (285)
T 1ozn_A 233 NDNPWV 238 (285)
T ss_dssp CSSCEE
T ss_pred cCCCcc
Confidence 987543
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=8.3e-12 Score=112.06 Aligned_cols=203 Identities=16% Similarity=0.120 Sum_probs=127.5
Q ss_pred cCCCccEEEcccCCCcccccccCCCCCCCCCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccCcCcceeccccccc
Q 020456 47 GFCDIEYLQLSDFPCLKEIWHGQALPVSFFNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNCDSIEEVLHLEELN 126 (326)
Q Consensus 47 ~~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~ 126 (326)
.+++|++|+++++. +..+ +...+++|++|+++++. ++...+. .+..+++|++|+++++..-..-...
T Consensus 98 ~l~~L~~L~Ls~n~-l~~l------~~~~~~~L~~L~l~~n~-l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~---- 164 (330)
T 1xku_A 98 PLVKLERLYLSKNQ-LKEL------PEKMPKTLQELRVHENE-ITKVRKS-VFNGLNQMIVVELGTNPLKSSGIEN---- 164 (330)
T ss_dssp TCTTCCEEECCSSC-CSBC------CSSCCTTCCEEECCSSC-CCBBCHH-HHTTCTTCCEEECCSSCCCGGGBCT----
T ss_pred CCCCCCEEECCCCc-CCcc------ChhhcccccEEECCCCc-ccccCHh-HhcCCccccEEECCCCcCCccCcCh----
Confidence 46677777776543 2332 22334677777777763 5555443 3667888888888776432100000
Q ss_pred cccCcCCCCCCCccEEecCCCccccccccccccccccccccEEeEecCCCCCccCcchhhhccCCCCCCceEEecccCcc
Q 020456 127 ADKEHISPLFPKLSELRLIDLPKLKRFCNFTENIIEMLMLWSLTIENCPNMETFVSNSVVHVTTDNKKPQKLTLEENFLL 206 (326)
Q Consensus 127 ~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~L~~L~l~~C~~l~~~~~~~~~~~~~~~~~L~~L~i~~~c~~ 206 (326)
.....+++|+.|++.++. ++.++. . .+++|++|+++++ .++...+..+. .++ +|++|++ .++.
T Consensus 165 ----~~~~~l~~L~~L~l~~n~-l~~l~~---~--~~~~L~~L~l~~n-~l~~~~~~~~~-~l~---~L~~L~L-s~n~- 227 (330)
T 1xku_A 165 ----GAFQGMKKLSYIRIADTN-ITTIPQ---G--LPPSLTELHLDGN-KITKVDAASLK-GLN---NLAKLGL-SFNS- 227 (330)
T ss_dssp ----TGGGGCTTCCEEECCSSC-CCSCCS---S--CCTTCSEEECTTS-CCCEECTGGGT-TCT---TCCEEEC-CSSC-
T ss_pred ----hhccCCCCcCEEECCCCc-cccCCc---c--ccccCCEEECCCC-cCCccCHHHhc-CCC---CCCEEEC-CCCc-
Confidence 011235799999998864 556654 2 2389999999987 46665443333 455 8999999 7765
Q ss_pred cceeccccccccCccccceeeecccceeecccCCCcceecCCCccccCCcccEEEeccCCccccccCCCC-------CCC
Q 020456 207 ADQVQPLFDEKVGEEVKGCIVFERMNYLTLDCLPSLTSFCLGNYALEFPSLEQVVVRQCPKMKIFSQGVL-------DTP 279 (326)
Q Consensus 207 l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~-------~~~ 279 (326)
++.+.+.. ...+++|++|++.++ .++.++.... .+++|++|+++++. ++.++.... ..+
T Consensus 228 l~~~~~~~----------~~~l~~L~~L~L~~N-~l~~lp~~l~--~l~~L~~L~l~~N~-i~~~~~~~f~~~~~~~~~~ 293 (330)
T 1xku_A 228 ISAVDNGS----------LANTPHLRELHLNNN-KLVKVPGGLA--DHKYIQVVYLHNNN-ISAIGSNDFCPPGYNTKKA 293 (330)
T ss_dssp CCEECTTT----------GGGSTTCCEEECCSS-CCSSCCTTTT--TCSSCCEEECCSSC-CCCCCTTSSSCSSCCTTSC
T ss_pred CceeChhh----------ccCCCCCCEEECCCC-cCccCChhhc--cCCCcCEEECCCCc-CCccChhhcCCcccccccc
Confidence 44433211 335689999999997 5667766544 78899999998764 555554221 247
Q ss_pred CccEEEeccccCCC
Q 020456 280 MLNKVNVTEEEKDD 293 (326)
Q Consensus 280 ~L~~L~l~~c~~~~ 293 (326)
.++.+++.+++-..
T Consensus 294 ~l~~l~l~~N~~~~ 307 (330)
T 1xku_A 294 SYSGVSLFSNPVQY 307 (330)
T ss_dssp CCSEEECCSSSSCG
T ss_pred cccceEeecCcccc
Confidence 88999998886443
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=99.41 E-value=5e-12 Score=108.24 Aligned_cols=203 Identities=16% Similarity=0.117 Sum_probs=139.8
Q ss_pred CCCccEEEcccCCCcccccccCCCCCCCCCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccCcCcceecccccccc
Q 020456 48 FCDIEYLQLSDFPCLKEIWHGQALPVSFFNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNCDSIEEVLHLEELNA 127 (326)
Q Consensus 48 ~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~ 127 (326)
.++|++|++.++. +..++... ...+++|++|+++++..++.+.+.. +..+++|++|++++|..++.+....
T Consensus 30 ~~~l~~L~l~~n~-l~~i~~~~---~~~l~~L~~L~l~~n~~l~~i~~~~-f~~l~~L~~L~l~~~n~l~~i~~~~---- 100 (239)
T 2xwt_C 30 PPSTQTLKLIETH-LRTIPSHA---FSNLPNISRIYVSIDVTLQQLESHS-FYNLSKVTHIEIRNTRNLTYIDPDA---- 100 (239)
T ss_dssp CTTCCEEEEESCC-CSEECTTT---TTTCTTCCEEEEECCSSCCEECTTT-EESCTTCCEEEEEEETTCCEECTTS----
T ss_pred CCcccEEEEeCCc-ceEECHHH---ccCCCCCcEEeCCCCCCcceeCHhH-cCCCcCCcEEECCCCCCeeEcCHHH----
Confidence 3589999998754 55554432 2567899999999986576766533 5788999999999866676653211
Q ss_pred ccCcCCCCCCCccEEecCCCcccccccccccccccccccc---EEeEecCCCCCccCcchhhhccCCCCCCc-eEEeccc
Q 020456 128 DKEHISPLFPKLSELRLIDLPKLKRFCNFTENIIEMLMLW---SLTIENCPNMETFVSNSVVHVTTDNKKPQ-KLTLEEN 203 (326)
Q Consensus 128 ~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~L~---~L~l~~C~~l~~~~~~~~~~~~~~~~~L~-~L~i~~~ 203 (326)
...+++|+.|++.++. ++.++. +..+++|+ .|++++++.++.+++.. ...+. +|+ +|++ .+
T Consensus 101 -----f~~l~~L~~L~l~~n~-l~~lp~----~~~l~~L~~L~~L~l~~N~~l~~i~~~~-~~~l~---~L~~~L~l-~~ 165 (239)
T 2xwt_C 101 -----LKELPLLKFLGIFNTG-LKMFPD----LTKVYSTDIFFILEITDNPYMTSIPVNA-FQGLC---NETLTLKL-YN 165 (239)
T ss_dssp -----EECCTTCCEEEEEEEC-CCSCCC----CTTCCBCCSEEEEEEESCTTCCEECTTT-TTTTB---SSEEEEEC-CS
T ss_pred -----hCCCCCCCEEeCCCCC-Cccccc----cccccccccccEEECCCCcchhhcCccc-ccchh---cceeEEEc-CC
Confidence 1134689999998764 555553 44566666 99999987788774433 33455 899 9998 76
Q ss_pred CcccceeccccccccCccccceeeecccceeecccCCCcceecCCCccccC-CcccEEEeccCCccccccCCCCCCCCcc
Q 020456 204 FLLADQVQPLFDEKVGEEVKGCIVFERMNYLTLDCLPSLTSFCLGNYALEF-PSLEQVVVRQCPKMKIFSQGVLDTPMLN 282 (326)
Q Consensus 204 c~~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~-~~L~~L~i~~c~~l~~l~~~~~~~~~L~ 282 (326)
+. ++.+... ....++|++|++.+++.++.++..... .+ ++|++|++++ ..++.+|.. .+++|+
T Consensus 166 n~-l~~i~~~-----------~~~~~~L~~L~L~~n~~l~~i~~~~~~-~l~~~L~~L~l~~-N~l~~l~~~--~~~~L~ 229 (239)
T 2xwt_C 166 NG-FTSVQGY-----------AFNGTKLDAVYLNKNKYLTVIDKDAFG-GVYSGPSLLDVSQ-TSVTALPSK--GLEHLK 229 (239)
T ss_dssp CC-CCEECTT-----------TTTTCEEEEEECTTCTTCCEECTTTTT-TCSBCCSEEECTT-CCCCCCCCT--TCTTCS
T ss_pred CC-CcccCHh-----------hcCCCCCCEEEcCCCCCcccCCHHHhh-ccccCCcEEECCC-CccccCChh--HhccCc
Confidence 64 4444322 111257899999998878888765443 56 8999999977 456667765 478999
Q ss_pred EEEecccc
Q 020456 283 KVNVTEEE 290 (326)
Q Consensus 283 ~L~l~~c~ 290 (326)
+|++.++.
T Consensus 230 ~L~l~~~~ 237 (239)
T 2xwt_C 230 ELIARNTW 237 (239)
T ss_dssp EEECTTC-
T ss_pred eeeccCcc
Confidence 99998763
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.4e-11 Score=113.11 Aligned_cols=61 Identities=15% Similarity=0.040 Sum_probs=28.6
Q ss_pred cCCCccEEEcccCCCcccccccCCCCCCCCCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccC
Q 020456 47 GFCDIEYLQLSDFPCLKEIWHGQALPVSFFNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNC 113 (326)
Q Consensus 47 ~~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c 113 (326)
.+++|++|++.++. +..+++.. ...+++|++|+++++. ++.+++. .+..+++|++|+++++
T Consensus 91 ~l~~L~~L~L~~n~-l~~~~~~~---~~~l~~L~~L~L~~n~-l~~l~~~-~~~~l~~L~~L~L~~n 151 (390)
T 3o6n_A 91 YAHTIQKLYMGFNA-IRYLPPHV---FQNVPLLTVLVLERND-LSSLPRG-IFHNTPKLTTLSMSNN 151 (390)
T ss_dssp TCTTCCEEECCSSC-CCCCCTTT---TTTCTTCCEEECCSSC-CCCCCTT-TTTTCTTCCEEECCSS
T ss_pred CCCCcCEEECCCCC-CCcCCHHH---hcCCCCCCEEECCCCc-cCcCCHH-HhcCCCCCcEEECCCC
Confidence 35666666666543 22222211 1345556666665552 3333322 2345555555555554
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.39 E-value=3.6e-12 Score=115.55 Aligned_cols=229 Identities=13% Similarity=0.139 Sum_probs=131.9
Q ss_pred CCeeEEEecccCCcccceecCCCchhhhhhhhccccCCCccEEEcccCCCcccccccCCCCCCCCCCccEEEEecCCCCC
Q 020456 12 PKLHEVQVTEKNEDELRHWEGNLNSTIQKCYEEMIGFCDIEYLQLSDFPCLKEIWHGQALPVSFFNNLEELEVDDCTNMS 91 (326)
Q Consensus 12 ~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~L~~L~l~~c~~l~ 91 (326)
++|++|++.+.. +..+... .+..+++|++|++.++. +..+.... ...+++|++|+++++. ++
T Consensus 52 ~~L~~L~l~~n~---i~~~~~~----------~~~~l~~L~~L~L~~n~-l~~~~~~~---~~~l~~L~~L~Ls~n~-l~ 113 (353)
T 2z80_A 52 EAVKSLDLSNNR---ITYISNS----------DLQRCVNLQALVLTSNG-INTIEEDS---FSSLGSLEHLDLSYNY-LS 113 (353)
T ss_dssp TTCCEEECTTSC---CCEECTT----------TTTTCTTCCEEECTTSC-CCEECTTT---TTTCTTCCEEECCSSC-CS
T ss_pred ccCcEEECCCCc---CcccCHH----------HhccCCCCCEEECCCCc-cCccCHhh---cCCCCCCCEEECCCCc-CC
Confidence 588999988332 2222211 13348889999988763 44433222 2467888999988874 55
Q ss_pred cCCchhHHhhCCCCCEEEEccCcCcceeccccccccccCcCCCCCCCccEEecCCCccccccccccccccccccccEEeE
Q 020456 92 SAIPANLLRCLNNLRCLEVRNCDSIEEVLHLEELNADKEHISPLFPKLSELRLIDLPKLKRFCNFTENIIEMLMLWSLTI 171 (326)
Q Consensus 92 ~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~L~~L~l 171 (326)
.+++ ..++.+++|++|+++++. +..++.. .....+++|+.|+++++..++.++.. .+..+++|++|++
T Consensus 114 ~~~~-~~~~~l~~L~~L~L~~n~-l~~l~~~--------~~~~~l~~L~~L~l~~n~~~~~~~~~--~~~~l~~L~~L~l 181 (353)
T 2z80_A 114 NLSS-SWFKPLSSLTFLNLLGNP-YKTLGET--------SLFSHLTKLQILRVGNMDTFTKIQRK--DFAGLTFLEELEI 181 (353)
T ss_dssp SCCH-HHHTTCTTCSEEECTTCC-CSSSCSS--------CSCTTCTTCCEEEEEESSSCCEECTT--TTTTCCEEEEEEE
T ss_pred cCCH-hHhCCCccCCEEECCCCC-CcccCch--------hhhccCCCCcEEECCCCccccccCHH--HccCCCCCCEEEC
Confidence 5544 346778889999888764 3323210 01123567888888777656555321 3456677777777
Q ss_pred ecCCCCCccCcchhhhccCCCCCCceEEecccCcccceeccccccccCccccceeeecccceeecccCCC----------
Q 020456 172 ENCPNMETFVSNSVVHVTTDNKKPQKLTLEENFLLADQVQPLFDEKVGEEVKGCIVFERMNYLTLDCLPS---------- 241 (326)
Q Consensus 172 ~~C~~l~~~~~~~~~~~~~~~~~L~~L~i~~~c~~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~---------- 241 (326)
+++. +....+..+. .++ +|++|++ .++.. ..+... ....+++|++|++.++.-
T Consensus 182 ~~n~-l~~~~~~~l~-~l~---~L~~L~l-~~n~l-~~~~~~----------~~~~~~~L~~L~L~~n~l~~~~~~~l~~ 244 (353)
T 2z80_A 182 DASD-LQSYEPKSLK-SIQ---NVSHLIL-HMKQH-ILLLEI----------FVDVTSSVECLELRDTDLDTFHFSELST 244 (353)
T ss_dssp EETT-CCEECTTTTT-TCS---EEEEEEE-ECSCS-TTHHHH----------HHHHTTTEEEEEEESCBCTTCCCC----
T ss_pred CCCC-cCccCHHHHh-ccc---cCCeecC-CCCcc-ccchhh----------hhhhcccccEEECCCCcccccccccccc
Confidence 7753 4444233222 233 6666666 55442 211100 011134444554444321
Q ss_pred ----------------c-----ceecCCCccccCCcccEEEeccCCccccccCCC-CCCCCccEEEecccc
Q 020456 242 ----------------L-----TSFCLGNYALEFPSLEQVVVRQCPKMKIFSQGV-LDTPMLNKVNVTEEE 290 (326)
Q Consensus 242 ----------------l-----~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~-~~~~~L~~L~l~~c~ 290 (326)
+ ..++... ..+++|++|+++++ .++.+|..+ ..+++|++|++++++
T Consensus 245 ~~~~~~l~~l~L~~~~l~~~~l~~l~~~l--~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 245 GETNSLIKKFTFRNVKITDESLFQVMKLL--NQISGLLELEFSRN-QLKSVPDGIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp --CCCCCCEEEEESCBCCHHHHHHHHHHH--HTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred ccccchhhccccccccccCcchhhhHHHH--hcccCCCEEECCCC-CCCccCHHHHhcCCCCCEEEeeCCC
Confidence 0 0111111 25789999999877 566788865 679999999999884
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.39 E-value=1.5e-13 Score=123.63 Aligned_cols=208 Identities=10% Similarity=0.097 Sum_probs=98.1
Q ss_pred CCccEEEcccCCCcccccccCCCCCCCCCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccCcCcceeccccccccc
Q 020456 49 CDIEYLQLSDFPCLKEIWHGQALPVSFFNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNCDSIEEVLHLEELNAD 128 (326)
Q Consensus 49 ~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~ 128 (326)
++++.|++.+.. +...+... ..+++|++|++++|. ++.......++.+++|++|++++|..-...+. .
T Consensus 70 ~~l~~L~l~~n~-l~~~~~~~----~~~~~L~~L~L~~~~-l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~--~---- 137 (336)
T 2ast_B 70 QGVIAFRCPRSF-MDQPLAEH----FSPFRVQHMDLSNSV-IEVSTLHGILSQCSKLQNLSLEGLRLSDPIVN--T---- 137 (336)
T ss_dssp TTCSEEECTTCE-ECSCCCSC----CCCBCCCEEECTTCE-ECHHHHHHHHTTBCCCSEEECTTCBCCHHHHH--H----
T ss_pred ccceEEEcCCcc-ccccchhh----ccCCCCCEEEccCCC-cCHHHHHHHHhhCCCCCEEeCcCcccCHHHHH--H----
Confidence 566666666433 22222221 345666666666663 33321122355666666666666531111110 0
Q ss_pred cCcCCCCCCCccEEecCCCccccc--cccccccccccccccEEeEecCCCCCccCcchhhhccCCCC-CCceEEecccCc
Q 020456 129 KEHISPLFPKLSELRLIDLPKLKR--FCNFTENIIEMLMLWSLTIENCPNMETFVSNSVVHVTTDNK-KPQKLTLEENFL 205 (326)
Q Consensus 129 ~~~~~~~~~~L~~L~l~~c~~L~~--~~~~~~~~~~~~~L~~L~l~~C~~l~~~~~~~~~~~~~~~~-~L~~L~i~~~c~ 205 (326)
+ ..+++|+.|++++|..++. ++. .+..+++|++|++++|+.++..........+ + +|++|++ .+|.
T Consensus 138 ---l-~~~~~L~~L~L~~~~~l~~~~l~~---~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l---~~~L~~L~l-~~~~ 206 (336)
T 2ast_B 138 ---L-AKNSNLVRLNLSGCSGFSEFALQT---LLSSCSRLDELNLSWCFDFTEKHVQVAVAHV---SETITQLNL-SGYR 206 (336)
T ss_dssp ---H-TTCTTCSEEECTTCBSCCHHHHHH---HHHHCTTCCEEECCCCTTCCHHHHHHHHHHS---CTTCCEEEC-CSCG
T ss_pred ---H-hcCCCCCEEECCCCCCCCHHHHHH---HHhcCCCCCEEcCCCCCCcChHHHHHHHHhc---ccCCCEEEe-CCCc
Confidence 0 0235666666666655542 222 3445666666666666555542111111111 2 5666666 6664
Q ss_pred -ccceeccccccccCccccceeeecccceeecccCCCcceecCCCccccCCcccEEEeccCCccccc-cCCCCCCCCccE
Q 020456 206 -LADQVQPLFDEKVGEEVKGCIVFERMNYLTLDCLPSLTSFCLGNYALEFPSLEQVVVRQCPKMKIF-SQGVLDTPMLNK 283 (326)
Q Consensus 206 -~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l-~~~~~~~~~L~~ 283 (326)
.++... .......+++|++|++.+|..++....... ..+++|++|++++|..+..- ...+..+++|++
T Consensus 207 ~~~~~~~---------l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~ 276 (336)
T 2ast_B 207 KNLQKSD---------LSTLVRRCPNLVHLDLSDSVMLKNDCFQEF-FQLNYLQHLSLSRCYDIIPETLLELGEIPTLKT 276 (336)
T ss_dssp GGSCHHH---------HHHHHHHCTTCSEEECTTCTTCCGGGGGGG-GGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCE
T ss_pred ccCCHHH---------HHHHHhhCCCCCEEeCCCCCcCCHHHHHHH-hCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCE
Confidence 232100 000022346666666666654432221111 14566666666666533221 012334666666
Q ss_pred EEeccc
Q 020456 284 VNVTEE 289 (326)
Q Consensus 284 L~l~~c 289 (326)
|++++|
T Consensus 277 L~l~~~ 282 (336)
T 2ast_B 277 LQVFGI 282 (336)
T ss_dssp EECTTS
T ss_pred EeccCc
Confidence 666666
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.39 E-value=1.9e-13 Score=122.93 Aligned_cols=185 Identities=16% Similarity=0.138 Sum_probs=105.5
Q ss_pred cCCCccEEEcccCCCccc-ccccCCCCCCCCCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccCcCcce--ecccc
Q 020456 47 GFCDIEYLQLSDFPCLKE-IWHGQALPVSFFNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNCDSIEE--VLHLE 123 (326)
Q Consensus 47 ~~~~L~~L~l~~~~~l~~-~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~--l~~~~ 123 (326)
.+++|++|+++++.-... ++... ..+++|++|++++|. +++..+.. +..+++|++|++++|..+.. +..
T Consensus 91 ~~~~L~~L~L~~~~l~~~~~~~~~----~~~~~L~~L~L~~~~-l~~~~~~~-l~~~~~L~~L~L~~~~~l~~~~l~~-- 162 (336)
T 2ast_B 91 SPFRVQHMDLSNSVIEVSTLHGIL----SQCSKLQNLSLEGLR-LSDPIVNT-LAKNSNLVRLNLSGCSGFSEFALQT-- 162 (336)
T ss_dssp CCBCCCEEECTTCEECHHHHHHHH----TTBCCCSEEECTTCB-CCHHHHHH-HTTCTTCSEEECTTCBSCCHHHHHH--
T ss_pred cCCCCCEEEccCCCcCHHHHHHHH----hhCCCCCEEeCcCcc-cCHHHHHH-HhcCCCCCEEECCCCCCCCHHHHHH--
Confidence 467788888877652211 22111 456788888888774 44333332 55678888888887754432 111
Q ss_pred ccccccCcCCCCCCCccEEecCCCccccc--cccccccccccc-cccEEeEecCC-CCCccCcchhhhccCCCCCCceEE
Q 020456 124 ELNADKEHISPLFPKLSELRLIDLPKLKR--FCNFTENIIEML-MLWSLTIENCP-NMETFVSNSVVHVTTDNKKPQKLT 199 (326)
Q Consensus 124 ~~~~~~~~~~~~~~~L~~L~l~~c~~L~~--~~~~~~~~~~~~-~L~~L~l~~C~-~l~~~~~~~~~~~~~~~~~L~~L~ 199 (326)
....+++|++|++++|..++. ++. .+..++ +|++|++++|. .+++.........++ +|++|+
T Consensus 163 --------~~~~~~~L~~L~l~~~~~l~~~~~~~---~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~---~L~~L~ 228 (336)
T 2ast_B 163 --------LLSSCSRLDELNLSWCFDFTEKHVQV---AVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCP---NLVHLD 228 (336)
T ss_dssp --------HHHHCTTCCEEECCCCTTCCHHHHHH---HHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCT---TCSEEE
T ss_pred --------HHhcCCCCCEEcCCCCCCcChHHHHH---HHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCC---CCCEEe
Confidence 001245788888887755653 222 345677 78888887775 444321222333455 788888
Q ss_pred ecccCcccceeccccccccCccccceeeecccceeecccCCCcceecCCCccccCCcccEEEeccC
Q 020456 200 LEENFLLADQVQPLFDEKVGEEVKGCIVFERMNYLTLDCLPSLTSFCLGNYALEFPSLEQVVVRQC 265 (326)
Q Consensus 200 i~~~c~~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c 265 (326)
+ .+|..++..... ....+++|++|++.+|..+........ ..+++|++|++++|
T Consensus 229 l-~~~~~l~~~~~~----------~l~~l~~L~~L~l~~~~~~~~~~~~~l-~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 229 L-SDSVMLKNDCFQ----------EFFQLNYLQHLSLSRCYDIIPETLLEL-GEIPTLKTLQVFGI 282 (336)
T ss_dssp C-TTCTTCCGGGGG----------GGGGCTTCCEEECTTCTTCCGGGGGGG-GGCTTCCEEECTTS
T ss_pred C-CCCCcCCHHHHH----------HHhCCCCCCEeeCCCCCCCCHHHHHHH-hcCCCCCEEeccCc
Confidence 8 777644322111 133457788888888764433221111 15778888888777
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.38 E-value=4.1e-12 Score=112.76 Aligned_cols=206 Identities=14% Similarity=0.083 Sum_probs=115.0
Q ss_pred cCCCccEEEcccCCCcccc---cccCCCCCCCCCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccCcCcceecccc
Q 020456 47 GFCDIEYLQLSDFPCLKEI---WHGQALPVSFFNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNCDSIEEVLHLE 123 (326)
Q Consensus 47 ~~~~L~~L~l~~~~~l~~~---~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~ 123 (326)
.+++|++|++.++.- ..+ .... ..+++|++|+++++. +..++.. +..+++|++|+++++. +..+...
T Consensus 50 ~l~~L~~L~L~~n~l-~~~~~~~~~~----~~~~~L~~L~Ls~n~-i~~l~~~--~~~l~~L~~L~l~~n~-l~~~~~~- 119 (306)
T 2z66_A 50 KLTQLTKLSLSSNGL-SFKGCCSQSD----FGTTSLKYLDLSFNG-VITMSSN--FLGLEQLEHLDFQHSN-LKQMSEF- 119 (306)
T ss_dssp TCTTCSEEECCSSCC-CEEEEEEHHH----HSCSCCCEEECCSCS-EEEEEEE--EETCTTCCEEECTTSE-EESSTTT-
T ss_pred ccccCCEEECCCCcc-CcccCccccc----ccccccCEEECCCCc-cccChhh--cCCCCCCCEEECCCCc-ccccccc-
Confidence 356666666665432 211 1111 234666666666663 3333222 4456667777666643 2211110
Q ss_pred ccccccCcCCCCCCCccEEecCCCccccccccccccccccccccEEeEecCCCCCc-cCcchhhhccCCCCCCceEEecc
Q 020456 124 ELNADKEHISPLFPKLSELRLIDLPKLKRFCNFTENIIEMLMLWSLTIENCPNMET-FVSNSVVHVTTDNKKPQKLTLEE 202 (326)
Q Consensus 124 ~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~L~~L~l~~C~~l~~-~~~~~~~~~~~~~~~L~~L~i~~ 202 (326)
.....+++|+.|+++++.--...+. .+..+++|++|+++++. +.. ..+.. ...++ +|++|++ .
T Consensus 120 -------~~~~~l~~L~~L~l~~n~l~~~~~~---~~~~l~~L~~L~l~~n~-l~~~~~~~~-~~~l~---~L~~L~L-s 183 (306)
T 2z66_A 120 -------SVFLSLRNLIYLDISHTHTRVAFNG---IFNGLSSLEVLKMAGNS-FQENFLPDI-FTELR---NLTFLDL-S 183 (306)
T ss_dssp -------TTTTTCTTCCEEECTTSCCEECSTT---TTTTCTTCCEEECTTCE-EGGGEECSC-CTTCT---TCCEEEC-T
T ss_pred -------hhhhhccCCCEEECCCCcCCccchh---hcccCcCCCEEECCCCc-cccccchhH-HhhCc---CCCEEEC-C
Confidence 1122356788888877643222222 45567888888887763 332 21222 22344 7888888 7
Q ss_pred cCcccceeccccccccCccccceeeecccceeecccCCCcceecCCCccccCCcccEEEeccCCccccccCCCCCC-CCc
Q 020456 203 NFLLADQVQPLFDEKVGEEVKGCIVFERMNYLTLDCLPSLTSFCLGNYALEFPSLEQVVVRQCPKMKIFSQGVLDT-PML 281 (326)
Q Consensus 203 ~c~~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~-~~L 281 (326)
++. ++.+.+.. ...+++|++|++.++. ++.++..... .+++|++|+++++.-....|..+..+ ++|
T Consensus 184 ~n~-l~~~~~~~----------~~~l~~L~~L~L~~N~-l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L 250 (306)
T 2z66_A 184 QCQ-LEQLSPTA----------FNSLSSLQVLNMSHNN-FFSLDTFPYK-CLNSLQVLDYSLNHIMTSKKQELQHFPSSL 250 (306)
T ss_dssp TSC-CCEECTTT----------TTTCTTCCEEECTTSC-CSBCCSGGGT-TCTTCCEEECTTSCCCBCSSSSCCCCCTTC
T ss_pred CCC-cCCcCHHH----------hcCCCCCCEEECCCCc-cCccChhhcc-CcccCCEeECCCCCCcccCHHHHHhhhccC
Confidence 764 33332221 3346788899988864 4444432222 67899999998875544455556566 489
Q ss_pred cEEEeccccC
Q 020456 282 NKVNVTEEEK 291 (326)
Q Consensus 282 ~~L~l~~c~~ 291 (326)
++|++++++-
T Consensus 251 ~~L~L~~N~~ 260 (306)
T 2z66_A 251 AFLNLTQNDF 260 (306)
T ss_dssp CEEECTTCCE
T ss_pred CEEEccCCCe
Confidence 9999988743
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.38 E-value=1.8e-11 Score=114.69 Aligned_cols=208 Identities=17% Similarity=0.149 Sum_probs=142.7
Q ss_pred CCcCCCCeeEEEecccCCcccceecCCCchhhhhhhhccccCCCccEEEcccCCCcccccccCCCCCCCCCCccEEEEec
Q 020456 7 GIVSTPKLHEVQVTEKNEDELRHWEGNLNSTIQKCYEEMIGFCDIEYLQLSDFPCLKEIWHGQALPVSFFNNLEELEVDD 86 (326)
Q Consensus 7 ~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~L~~L~l~~ 86 (326)
.+.++++|+.|++.+. .+..+... ....+++|++|++.++. +..++... ...+++|++|++++
T Consensus 94 ~~~~l~~L~~L~Ls~n---~i~~~~~~----------~~~~l~~L~~L~L~~n~-l~~~~~~~---~~~l~~L~~L~L~~ 156 (452)
T 3zyi_A 94 TFRHLHHLEVLQLGRN---SIRQIEVG----------AFNGLASLNTLELFDNW-LTVIPSGA---FEYLSKLRELWLRN 156 (452)
T ss_dssp TTTTCTTCCEEECCSS---CCCEECTT----------TTTTCTTCCEEECCSSC-CSBCCTTT---SSSCTTCCEEECCS
T ss_pred HcCCCCCCCEEECCCC---ccCCcChh----------hccCcccCCEEECCCCc-CCccChhh---hcccCCCCEEECCC
Confidence 3456777777777622 12222111 13458999999999764 45544432 25689999999999
Q ss_pred CCCCCcCCchhHHhhCCCCCEEEEccCcCcceeccccccccccCcCCCCCCCccEEecCCCccccccccccccccccccc
Q 020456 87 CTNMSSAIPANLLRCLNNLRCLEVRNCDSIEEVLHLEELNADKEHISPLFPKLSELRLIDLPKLKRFCNFTENIIEMLML 166 (326)
Q Consensus 87 c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~L 166 (326)
+. ++.+++. .+..+++|++|++++|..++.+... ....+++|+.|+++++ +++.++ .+..+++|
T Consensus 157 N~-l~~~~~~-~~~~l~~L~~L~l~~~~~l~~i~~~---------~~~~l~~L~~L~L~~n-~l~~~~----~~~~l~~L 220 (452)
T 3zyi_A 157 NP-IESIPSY-AFNRVPSLMRLDLGELKKLEYISEG---------AFEGLFNLKYLNLGMC-NIKDMP----NLTPLVGL 220 (452)
T ss_dssp CC-CCEECTT-TTTTCTTCCEEECCCCTTCCEECTT---------TTTTCTTCCEEECTTS-CCSSCC----CCTTCTTC
T ss_pred CC-cceeCHh-HHhcCCcccEEeCCCCCCccccChh---------hccCCCCCCEEECCCC-cccccc----cccccccc
Confidence 85 6666543 3778999999999998888766321 1123579999999987 466655 46778999
Q ss_pred cEEeEecCCCCCccCcchhhhccCCCCCCceEEecccCcccceeccccccccCccccceeeecccceeecccCCCcceec
Q 020456 167 WSLTIENCPNMETFVSNSVVHVTTDNKKPQKLTLEENFLLADQVQPLFDEKVGEEVKGCIVFERMNYLTLDCLPSLTSFC 246 (326)
Q Consensus 167 ~~L~l~~C~~l~~~~~~~~~~~~~~~~~L~~L~i~~~c~~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~ 246 (326)
+.|+++++ .+..+.+.. ...+. +|+.|++ .++. ++.+.+.. ...+++|+.|++.++ .++.++
T Consensus 221 ~~L~Ls~N-~l~~~~~~~-~~~l~---~L~~L~L-~~n~-l~~~~~~~----------~~~l~~L~~L~L~~N-~l~~~~ 282 (452)
T 3zyi_A 221 EELEMSGN-HFPEIRPGS-FHGLS---SLKKLWV-MNSQ-VSLIERNA----------FDGLASLVELNLAHN-NLSSLP 282 (452)
T ss_dssp CEEECTTS-CCSEECGGG-GTTCT---TCCEEEC-TTSC-CCEECTTT----------TTTCTTCCEEECCSS-CCSCCC
T ss_pred cEEECcCC-cCcccCccc-ccCcc---CCCEEEe-CCCc-CceECHHH----------hcCCCCCCEEECCCC-cCCccC
Confidence 99999986 566664433 33455 9999999 7765 44433221 335689999999986 677776
Q ss_pred CCCccccCCcccEEEeccCC
Q 020456 247 LGNYALEFPSLEQVVVRQCP 266 (326)
Q Consensus 247 ~~~~~~~~~~L~~L~i~~c~ 266 (326)
..... .+++|++|++.+.+
T Consensus 283 ~~~~~-~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 283 HDLFT-PLRYLVELHLHHNP 301 (452)
T ss_dssp TTSST-TCTTCCEEECCSSC
T ss_pred hHHhc-cccCCCEEEccCCC
Confidence 65433 68899999998755
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.38 E-value=1.6e-11 Score=114.61 Aligned_cols=203 Identities=14% Similarity=0.194 Sum_probs=145.4
Q ss_pred CCCccEEEcccCCCcccccccCCCCCCCCCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccCcCcceecccccccc
Q 020456 48 FCDIEYLQLSDFPCLKEIWHGQALPVSFFNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNCDSIEEVLHLEELNA 127 (326)
Q Consensus 48 ~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~ 127 (326)
.++++.|+++++. +..+.... ...+++|++|+++++. ++.+.+. .+..+++|++|+++++. +..++.
T Consensus 63 ~~~l~~L~L~~n~-i~~~~~~~---~~~l~~L~~L~Ls~n~-i~~i~~~-~~~~l~~L~~L~L~~n~-l~~~~~------ 129 (440)
T 3zyj_A 63 STNTRLLNLHENQ-IQIIKVNS---FKHLRHLEILQLSRNH-IRTIEIG-AFNGLANLNTLELFDNR-LTTIPN------ 129 (440)
T ss_dssp CTTCSEEECCSCC-CCEECTTT---TSSCSSCCEEECCSSC-CCEECGG-GGTTCSSCCEEECCSSC-CSSCCT------
T ss_pred CCCCcEEEccCCc-CCeeCHHH---hhCCCCCCEEECCCCc-CCccChh-hccCCccCCEEECCCCc-CCeeCH------
Confidence 4789999998755 44444332 2578999999999984 6666554 37789999999999864 443321
Q ss_pred ccCcCCCCCCCccEEecCCCccccccccccccccccccccEEeEecCCCCCccCcchhhhccCCCCCCceEEecccCccc
Q 020456 128 DKEHISPLFPKLSELRLIDLPKLKRFCNFTENIIEMLMLWSLTIENCPNMETFVSNSVVHVTTDNKKPQKLTLEENFLLA 207 (326)
Q Consensus 128 ~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~L~~L~l~~C~~l~~~~~~~~~~~~~~~~~L~~L~i~~~c~~l 207 (326)
.....+++|+.|++++.. ++.++.. .+..+++|++|++++|..+..+... ....+. +|++|++ .++. +
T Consensus 130 ---~~~~~l~~L~~L~L~~N~-i~~~~~~--~~~~l~~L~~L~l~~~~~l~~i~~~-~~~~l~---~L~~L~L-~~n~-l 197 (440)
T 3zyj_A 130 ---GAFVYLSKLKELWLRNNP-IESIPSY--AFNRIPSLRRLDLGELKRLSYISEG-AFEGLS---NLRYLNL-AMCN-L 197 (440)
T ss_dssp ---TTSCSCSSCCEEECCSCC-CCEECTT--TTTTCTTCCEEECCCCTTCCEECTT-TTTTCS---SCCEEEC-TTSC-C
T ss_pred ---hHhhccccCceeeCCCCc-ccccCHH--HhhhCcccCEeCCCCCCCcceeCcc-hhhccc---ccCeecC-CCCc-C
Confidence 112245799999999864 5555432 4667899999999999888887443 334555 9999999 8875 4
Q ss_pred ceeccccccccCccccceeeecccceeecccCCCcceecCCCccccCCcccEEEeccCCccccc-cCCCCCCCCccEEEe
Q 020456 208 DQVQPLFDEKVGEEVKGCIVFERMNYLTLDCLPSLTSFCLGNYALEFPSLEQVVVRQCPKMKIF-SQGVLDTPMLNKVNV 286 (326)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l-~~~~~~~~~L~~L~l 286 (326)
+.+.. ...+++|+.|++.++ .++.+...... .+++|++|++.++. ++.+ +..+..+++|++|++
T Consensus 198 ~~~~~------------~~~l~~L~~L~Ls~N-~l~~~~~~~~~-~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L 262 (440)
T 3zyj_A 198 REIPN------------LTPLIKLDELDLSGN-HLSAIRPGSFQ-GLMHLQKLWMIQSQ-IQVIERNAFDNLQSLVEINL 262 (440)
T ss_dssp SSCCC------------CTTCSSCCEEECTTS-CCCEECTTTTT-TCTTCCEEECTTCC-CCEECTTSSTTCTTCCEEEC
T ss_pred ccccc------------cCCCcccCEEECCCC-ccCccChhhhc-cCccCCEEECCCCc-eeEEChhhhcCCCCCCEEEC
Confidence 43321 335689999999997 56666544433 78999999998764 4444 446667999999999
Q ss_pred cccc
Q 020456 287 TEEE 290 (326)
Q Consensus 287 ~~c~ 290 (326)
+++.
T Consensus 263 ~~N~ 266 (440)
T 3zyj_A 263 AHNN 266 (440)
T ss_dssp TTSC
T ss_pred CCCC
Confidence 9983
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.38 E-value=7.4e-12 Score=118.61 Aligned_cols=153 Identities=10% Similarity=0.036 Sum_probs=105.9
Q ss_pred CCCCccEEecCCCccccccccccccccccccccEEeEecCCCCCccCcchhhhccCCCCCCceEEecccCcccceecccc
Q 020456 135 LFPKLSELRLIDLPKLKRFCNFTENIIEMLMLWSLTIENCPNMETFVSNSVVHVTTDNKKPQKLTLEENFLLADQVQPLF 214 (326)
Q Consensus 135 ~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~L~~L~l~~C~~l~~~~~~~~~~~~~~~~~L~~L~i~~~c~~l~~~~~~~ 214 (326)
.+++|+.|+++++. +..+... .+..+++|+.|+++++ .+....+..+...++ +|++|++ .++. ++.+.+.
T Consensus 118 ~l~~L~~L~L~~N~-l~~~~~~--~~~~l~~L~~L~Ls~N-~l~~~~~~~l~~~l~---~L~~L~L-s~N~-l~~~~~~- 187 (487)
T 3oja_A 118 RGQGKKNIYLANNK-ITMLRDL--DEGCRSRVQYLDLKLN-EIDTVNFAELAASSD---TLEHLNL-QYNF-IYDVKGQ- 187 (487)
T ss_dssp CCSSCEEEECCSSC-CCSGGGB--CGGGGSSEEEEECTTS-CCCEEEGGGGGGGTT---TCCEEEC-TTSC-CCEEECC-
T ss_pred ccCCCCEEECCCCC-CCCCCch--hhcCCCCCCEEECCCC-CCCCcChHHHhhhCC---cccEEec-CCCc-ccccccc-
Confidence 35789999998865 4433221 5567899999999886 566654555554556 9999999 8776 4444222
Q ss_pred ccccCccccceeeecccceeecccCCCcceecCCCccccCCcccEEEeccCCccccccCCCCCCCCccEEEeccccCCCC
Q 020456 215 DEKVGEEVKGCIVFERMNYLTLDCLPSLTSFCLGNYALEFPSLEQVVVRQCPKMKIFSQGVLDTPMLNKVNVTEEEKDDD 294 (326)
Q Consensus 215 ~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~~L~~L~l~~c~~~~~ 294 (326)
..+++|++|++.++ .++.++.... .+++|+.|+++++ .+..+|..+..+++|+.|++++++-..
T Consensus 188 -----------~~l~~L~~L~Ls~N-~l~~~~~~~~--~l~~L~~L~Ls~N-~l~~lp~~l~~l~~L~~L~l~~N~l~c- 251 (487)
T 3oja_A 188 -----------VVFAKLKTLDLSSN-KLAFMGPEFQ--SAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGNGFHC- 251 (487)
T ss_dssp -----------CCCTTCCEEECCSS-CCCEECGGGG--GGTTCSEEECTTS-CCCEECTTCCCCTTCCEEECTTCCBCH-
T ss_pred -----------ccCCCCCEEECCCC-CCCCCCHhHc--CCCCccEEEecCC-cCcccchhhccCCCCCEEEcCCCCCcC-
Confidence 24689999999996 4677765433 7899999999875 566788888789999999999884331
Q ss_pred ccccccCchHHHHHHHHHh
Q 020456 295 DEGCWEGNLNDTIKQLFNE 313 (326)
Q Consensus 295 ~~~~~~~~~~~~l~~l~i~ 313 (326)
..++........++.+.+.
T Consensus 252 ~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 252 GTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp HHHHHHHTTCHHHHHHHHH
T ss_pred cchHHHHHhCCCCcEEecc
Confidence 1222223334667766664
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.37 E-value=1.8e-12 Score=130.25 Aligned_cols=81 Identities=10% Similarity=0.091 Sum_probs=48.6
Q ss_pred eecccceeecccCCCcceecCCCccccCCcccEEEecc------CCccccccCCCCCCCCccEEEeccccCCCCcccccc
Q 020456 227 VFERMNYLTLDCLPSLTSFCLGNYALEFPSLEQVVVRQ------CPKMKIFSQGVLDTPMLNKVNVTEEEKDDDDEGCWE 300 (326)
Q Consensus 227 ~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~------c~~l~~l~~~~~~~~~L~~L~l~~c~~~~~~~~~~~ 300 (326)
.+++|+.|++.++ .++.+|.... .+++|+.|.+++ +.-...+|..+..+++|++|++++|.- ..++..
T Consensus 751 ~l~~L~~L~Ls~N-~L~~lp~~l~--~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L---~~Ip~~ 824 (876)
T 4ecn_A 751 TLPYLSNMDVSYN-CFSSFPTQPL--NSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI---RKVDEK 824 (876)
T ss_dssp TCTTCCEEECCSS-CCSSCCCGGG--GCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC---CBCCSC
T ss_pred cCCCcCEEEeCCC-CCCccchhhh--cCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC---CccCHh
Confidence 4577777777775 3444554333 677888888865 333445676676788888888887743 233322
Q ss_pred CchHHHHHHHHHhhh
Q 020456 301 GNLNDTIKQLFNEIV 315 (326)
Q Consensus 301 ~~~~~~l~~l~i~~~ 315 (326)
.. ++|+.+.+++.
T Consensus 825 l~--~~L~~LdLs~N 837 (876)
T 4ecn_A 825 LT--PQLYILDIADN 837 (876)
T ss_dssp CC--SSSCEEECCSC
T ss_pred hc--CCCCEEECCCC
Confidence 22 25555555443
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.36 E-value=1.7e-11 Score=117.86 Aligned_cols=251 Identities=10% Similarity=0.031 Sum_probs=164.8
Q ss_pred cCCcCCCCeeEEEecccCCcccceecCCCchhhhhhhhccccCCCccEEEcccCCCcccccccCCCCCCCCCCccEEEEe
Q 020456 6 QGIVSTPKLHEVQVTEKNEDELRHWEGNLNSTIQKCYEEMIGFCDIEYLQLSDFPCLKEIWHGQALPVSFFNNLEELEVD 85 (326)
Q Consensus 6 ~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~L~~L~l~ 85 (326)
..+..+++|+.|++.+........+ ...+ +|++|++.++... . ++...+++|++|++.
T Consensus 276 ~~~~~l~~L~~L~l~~~~l~~l~~~--------------~~~~-~L~~L~l~~n~~~-~------l~~~~l~~L~~L~l~ 333 (570)
T 2z63_A 276 DLFNCLTNVSSFSLVSVTIERVKDF--------------SYNF-GWQHLELVNCKFG-Q------FPTLKLKSLKRLTFT 333 (570)
T ss_dssp TTTGGGTTCSEEEEESCEECSCCBC--------------CSCC-CCSEEEEESCBCS-S------CCBCBCSSCCEEEEE
T ss_pred hhhcCcCcccEEEecCccchhhhhh--------------hccC-CccEEeeccCccc-c------cCcccccccCEEeCc
Confidence 4466789999999994332222221 2236 9999999987643 3 334578999999999
Q ss_pred cCCCCCcCCchhHHhhCCCCCEEEEccCcCcceeccccccccccCcCCCCCCCccEEecCCCcccccccccccccccccc
Q 020456 86 DCTNMSSAIPANLLRCLNNLRCLEVRNCDSIEEVLHLEELNADKEHISPLFPKLSELRLIDLPKLKRFCNFTENIIEMLM 165 (326)
Q Consensus 86 ~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~ 165 (326)
++... ...+. ..+++|++|+++++. +........ ....+++|+.|++.++. +..++. .+..+++
T Consensus 334 ~n~~~-~~~~~---~~~~~L~~L~l~~n~-l~~~~~~~~-------~~~~~~~L~~L~l~~n~-l~~~~~---~~~~l~~ 397 (570)
T 2z63_A 334 SNKGG-NAFSE---VDLPSLEFLDLSRNG-LSFKGCCSQ-------SDFGTTSLKYLDLSFNG-VITMSS---NFLGLEQ 397 (570)
T ss_dssp SCBSC-CBCCC---CBCTTCCEEECCSSC-CBEEEEEEH-------HHHTCSCCCEEECCSCS-EEEEEE---EEETCTT
T ss_pred CCccc-ccccc---ccCCCCCEEeCcCCc-cCccccccc-------cccccCccCEEECCCCc-cccccc---cccccCC
Confidence 98644 33332 579999999999875 332210000 01135799999999875 445444 4677899
Q ss_pred ccEEeEecCCCCCccCcchhhhccCCCCCCceEEecccCcccceeccccccccCccccceeeecccceeecccCCCc-ce
Q 020456 166 LWSLTIENCPNMETFVSNSVVHVTTDNKKPQKLTLEENFLLADQVQPLFDEKVGEEVKGCIVFERMNYLTLDCLPSL-TS 244 (326)
Q Consensus 166 L~~L~l~~C~~l~~~~~~~~~~~~~~~~~L~~L~i~~~c~~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l-~~ 244 (326)
|++|++++|. +....+......++ +|++|++ .+|...... +.. ...+++|++|++.++.-. ..
T Consensus 398 L~~L~l~~n~-l~~~~~~~~~~~l~---~L~~L~l-~~n~l~~~~-~~~----------~~~l~~L~~L~l~~n~l~~~~ 461 (570)
T 2z63_A 398 LEHLDFQHSN-LKQMSEFSVFLSLR---NLIYLDI-SHTHTRVAF-NGI----------FNGLSSLEVLKMAGNSFQENF 461 (570)
T ss_dssp CCEEECTTSE-EESCTTSCTTTTCT---TCCEEEC-TTSCCEECC-TTT----------TTTCTTCCEEECTTCEEGGGE
T ss_pred CCEEEccCCc-cccccchhhhhcCC---CCCEEeC-cCCcccccc-hhh----------hhcCCcCcEEECcCCcCcccc
Confidence 9999999874 44443333344555 9999999 888643322 211 335689999999998754 24
Q ss_pred ecCCCccccCCcccEEEeccCCccccccCCCCCCCCccEEEeccccCCCCccccccCchHHHHHHHHHhh
Q 020456 245 FCLGNYALEFPSLEQVVVRQCPKMKIFSQGVLDTPMLNKVNVTEEEKDDDDEGCWEGNLNDTIKQLFNEI 314 (326)
Q Consensus 245 ~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~l~~l~i~~ 314 (326)
++.... .+++|++|++++|.--...|..+..+++|++|++++|. +. ...+..+..+++|+.+.+++
T Consensus 462 ~p~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~-~~~~~~~~~l~~L~~L~l~~ 527 (570)
T 2z63_A 462 LPDIFT--ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQ-LK-SVPDGIFDRLTSLQKIWLHT 527 (570)
T ss_dssp ECSCCT--TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CS-CCCTTTTTTCTTCCEEECCS
T ss_pred chhhhh--cccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCc-CC-CCCHHHhhcccCCcEEEecC
Confidence 554333 78999999999886544447777789999999999983 22 12222333445555555544
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=99.36 E-value=2.8e-11 Score=113.84 Aligned_cols=123 Identities=11% Similarity=0.157 Sum_probs=73.9
Q ss_pred CCCccEEecCCCccccccccccccccccccccEEeEecCCCCCccCcchhhhccCCCCCCceEEecccCcccceeccccc
Q 020456 136 FPKLSELRLIDLPKLKRFCNFTENIIEMLMLWSLTIENCPNMETFVSNSVVHVTTDNKKPQKLTLEENFLLADQVQPLFD 215 (326)
Q Consensus 136 ~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~L~~L~l~~C~~l~~~~~~~~~~~~~~~~~L~~L~i~~~c~~l~~~~~~~~ 215 (326)
+++|+.|+++++. +..++ .+..+++|+.|++++| .+..+.+ ...++ +|+.|++ .+|. +..+.+
T Consensus 264 l~~L~~L~l~~n~-l~~~~----~~~~l~~L~~L~L~~n-~l~~~~~---~~~l~---~L~~L~L-~~n~-l~~~~~--- 326 (466)
T 1o6v_A 264 LTKLTELKLGANQ-ISNIS----PLAGLTALTNLELNEN-QLEDISP---ISNLK---NLTYLTL-YFNN-ISDISP--- 326 (466)
T ss_dssp CTTCSEEECCSSC-CCCCG----GGTTCTTCSEEECCSS-CCSCCGG---GGGCT---TCSEEEC-CSSC-CSCCGG---
T ss_pred CCCCCEEECCCCc-cCccc----cccCCCccCeEEcCCC-cccCchh---hcCCC---CCCEEEC-cCCc-CCCchh---
Confidence 4567777776653 33332 2455677777777775 3444422 22344 7777777 6664 322211
Q ss_pred cccCccccceeeecccceeecccCCCcceecCCCccccCCcccEEEeccCCccccccCCCCCCCCccEEEecccc
Q 020456 216 EKVGEEVKGCIVFERMNYLTLDCLPSLTSFCLGNYALEFPSLEQVVVRQCPKMKIFSQGVLDTPMLNKVNVTEEE 290 (326)
Q Consensus 216 ~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~~L~~L~l~~c~ 290 (326)
...+++|++|++.++ .++.++. . ..+++|++|++++|.--...| +..+++|++|++++|.
T Consensus 327 ---------~~~l~~L~~L~l~~n-~l~~~~~-l--~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~ 386 (466)
T 1o6v_A 327 ---------VSSLTKLQRLFFYNN-KVSDVSS-L--ANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQA 386 (466)
T ss_dssp ---------GGGCTTCCEEECCSS-CCCCCGG-G--TTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEE
T ss_pred ---------hccCccCCEeECCCC-ccCCchh-h--ccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCc
Confidence 225678888888887 3454432 1 267888888887775433333 4568888888888873
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=99.36 E-value=1.4e-11 Score=105.48 Aligned_cols=203 Identities=14% Similarity=0.123 Sum_probs=140.4
Q ss_pred CCeeEEEecccCCcccceecCCCchhhhhhhhccccCCCccEEEcccCCCcccccccCCCCCCCCCCccEEEEecCCCCC
Q 020456 12 PKLHEVQVTEKNEDELRHWEGNLNSTIQKCYEEMIGFCDIEYLQLSDFPCLKEIWHGQALPVSFFNNLEELEVDDCTNMS 91 (326)
Q Consensus 12 ~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~L~~L~l~~c~~l~ 91 (326)
++|++|++.+.. +..+... ....+++|++|++.++..+..+.... ...+++|++|++.+|.+++
T Consensus 31 ~~l~~L~l~~n~---l~~i~~~----------~~~~l~~L~~L~l~~n~~l~~i~~~~---f~~l~~L~~L~l~~~n~l~ 94 (239)
T 2xwt_C 31 PSTQTLKLIETH---LRTIPSH----------AFSNLPNISRIYVSIDVTLQQLESHS---FYNLSKVTHIEIRNTRNLT 94 (239)
T ss_dssp TTCCEEEEESCC---CSEECTT----------TTTTCTTCCEEEEECCSSCCEECTTT---EESCTTCCEEEEEEETTCC
T ss_pred CcccEEEEeCCc---ceEECHH----------HccCCCCCcEEeCCCCCCcceeCHhH---cCCCcCCcEEECCCCCCee
Confidence 378888888322 2222221 13358999999999887566655432 2567999999999976787
Q ss_pred cCCchhHHhhCCCCCEEEEccCcCcceeccccccccccCcCCCCCCCcc---EEecCCCcccccccccccccccccccc-
Q 020456 92 SAIPANLLRCLNNLRCLEVRNCDSIEEVLHLEELNADKEHISPLFPKLS---ELRLIDLPKLKRFCNFTENIIEMLMLW- 167 (326)
Q Consensus 92 ~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~L~---~L~l~~c~~L~~~~~~~~~~~~~~~L~- 167 (326)
.+.+.. +..+++|++|+++++. ++.++.. ..+++|+ .|++++++.++.++.. .+..+++|+
T Consensus 95 ~i~~~~-f~~l~~L~~L~l~~n~-l~~lp~~-----------~~l~~L~~L~~L~l~~N~~l~~i~~~--~~~~l~~L~~ 159 (239)
T 2xwt_C 95 YIDPDA-LKELPLLKFLGIFNTG-LKMFPDL-----------TKVYSTDIFFILEITDNPYMTSIPVN--AFQGLCNETL 159 (239)
T ss_dssp EECTTS-EECCTTCCEEEEEEEC-CCSCCCC-----------TTCCBCCSEEEEEEESCTTCCEECTT--TTTTTBSSEE
T ss_pred EcCHHH-hCCCCCCCEEeCCCCC-Ccccccc-----------ccccccccccEEECCCCcchhhcCcc--cccchhccee
Confidence 776543 6789999999999875 4433221 1234555 9999998788887752 366789999
Q ss_pred EEeEecCCCCCccCcchhhhccCCCCCCceEEecccCcccceeccccccccCccccceeee-cccceeecccCCCcceec
Q 020456 168 SLTIENCPNMETFVSNSVVHVTTDNKKPQKLTLEENFLLADQVQPLFDEKVGEEVKGCIVF-ERMNYLTLDCLPSLTSFC 246 (326)
Q Consensus 168 ~L~l~~C~~l~~~~~~~~~~~~~~~~~L~~L~i~~~c~~l~~~~~~~~~~~~~~~~~~~~l-~~L~~L~l~~c~~l~~~~ 246 (326)
.|+++++ .++.++.. .... . +|++|++ .++..++.+.... ...+ ++|+.|++.+ ..++.++
T Consensus 160 ~L~l~~n-~l~~i~~~-~~~~-~---~L~~L~L-~~n~~l~~i~~~~----------~~~l~~~L~~L~l~~-N~l~~l~ 221 (239)
T 2xwt_C 160 TLKLYNN-GFTSVQGY-AFNG-T---KLDAVYL-NKNKYLTVIDKDA----------FGGVYSGPSLLDVSQ-TSVTALP 221 (239)
T ss_dssp EEECCSC-CCCEECTT-TTTT-C---EEEEEEC-TTCTTCCEECTTT----------TTTCSBCCSEEECTT-CCCCCCC
T ss_pred EEEcCCC-CCcccCHh-hcCC-C---CCCEEEc-CCCCCcccCCHHH----------hhccccCCcEEECCC-CccccCC
Confidence 9999886 56666433 2222 4 8999999 9887677664331 2345 8899999998 4567666
Q ss_pred CCCccccCCcccEEEeccCCc
Q 020456 247 LGNYALEFPSLEQVVVRQCPK 267 (326)
Q Consensus 247 ~~~~~~~~~~L~~L~i~~c~~ 267 (326)
.. .+++|++|.+.+++.
T Consensus 222 ~~----~~~~L~~L~l~~~~~ 238 (239)
T 2xwt_C 222 SK----GLEHLKELIARNTWT 238 (239)
T ss_dssp CT----TCTTCSEEECTTC--
T ss_pred hh----HhccCceeeccCccC
Confidence 43 578999999988764
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=99.34 E-value=1e-12 Score=128.50 Aligned_cols=61 Identities=11% Similarity=0.245 Sum_probs=35.3
Q ss_pred eecccceeecccCCCcceecCCCccccCCcccEEEecc------CCccccccCCCCCCCCccEEEecccc
Q 020456 227 VFERMNYLTLDCLPSLTSFCLGNYALEFPSLEQVVVRQ------CPKMKIFSQGVLDTPMLNKVNVTEEE 290 (326)
Q Consensus 227 ~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~------c~~l~~l~~~~~~~~~L~~L~l~~c~ 290 (326)
.+++|++|++.++. ++.+|.... .+++|++|++++ +.-.+.+|..+..+++|++|++++|.
T Consensus 511 ~l~~L~~L~Ls~N~-l~~ip~~~~--~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 577 (636)
T 4eco_A 511 TLPYLVGIDLSYNS-FSKFPTQPL--NSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSND 577 (636)
T ss_dssp TCTTCCEEECCSSC-CSSCCCGGG--GCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSC
T ss_pred cCCCcCEEECCCCC-CCCcChhhh--cCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCc
Confidence 44666666666643 333444333 566777777743 22234466666667777777777764
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=99.34 E-value=8.2e-12 Score=122.15 Aligned_cols=118 Identities=18% Similarity=0.191 Sum_probs=64.2
Q ss_pred ccccCCCccEEEcccCCCccc------------------ccccCCCCCC--CCCCccEEEEecCCCCCcCCchhHHhhCC
Q 020456 44 EMIGFCDIEYLQLSDFPCLKE------------------IWHGQALPVS--FFNNLEELEVDDCTNMSSAIPANLLRCLN 103 (326)
Q Consensus 44 ~~~~~~~L~~L~l~~~~~l~~------------------~~~~~~l~~~--~~~~L~~L~l~~c~~l~~~~~~~~~~~l~ 103 (326)
.+..+++|++|+++++. +.. ++... + .+++|++|++++|.....+ |.. +++++
T Consensus 201 ~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~~~~~ip~~l----~~~~l~~L~~L~L~~n~l~~~~-p~~-l~~l~ 273 (636)
T 4eco_A 201 AVMRLTKLRQFYMGNSP-FVAENICEAWENENSEYAQQYKTEDL----KWDNLKDLTDVEVYNCPNLTKL-PTF-LKALP 273 (636)
T ss_dssp GGGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCC----CGGGCTTCCEEEEECCTTCSSC-CTT-TTTCS
T ss_pred HHhcccCCCEEECcCCc-cccccccccccccccchhcccCchhh----hhcccCCCCEEEecCCcCCccC-hHH-HhcCC
Confidence 35567888888888766 343 44333 4 6788888888888644333 332 67788
Q ss_pred CCCEEEEccCcCcce--eccccccccccCcCCCCCCCccEEecCCCccccccccccccccccccccEEeEecC
Q 020456 104 NLRCLEVRNCDSIEE--VLHLEELNADKEHISPLFPKLSELRLIDLPKLKRFCNFTENIIEMLMLWSLTIENC 174 (326)
Q Consensus 104 ~L~~L~l~~c~~l~~--l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~L~~L~l~~C 174 (326)
+|++|+++++..+.. ++...+... ....+++|+.|+++++. ++.++... .+..+++|+.|+++++
T Consensus 274 ~L~~L~Ls~n~~l~~~~lp~~~~~L~----~~~~l~~L~~L~L~~n~-l~~ip~~~-~l~~l~~L~~L~L~~N 340 (636)
T 4eco_A 274 EMQLINVACNRGISGEQLKDDWQALA----DAPVGEKIQIIYIGYNN-LKTFPVET-SLQKMKKLGMLECLYN 340 (636)
T ss_dssp SCCEEECTTCTTSCHHHHHHHHHHHH----HSGGGGTCCEEECCSSC-CSSCCCHH-HHTTCTTCCEEECCSC
T ss_pred CCCEEECcCCCCCccccchHHHHhhh----ccccCCCCCEEECCCCc-CCccCchh-hhccCCCCCEEeCcCC
Confidence 888888888763332 221111000 00012356666665543 33333200 2344555666666554
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.34 E-value=1.9e-11 Score=118.70 Aligned_cols=12 Identities=25% Similarity=0.232 Sum_probs=6.9
Q ss_pred CCCccEEecCCC
Q 020456 136 FPKLSELRLIDL 147 (326)
Q Consensus 136 ~~~L~~L~l~~c 147 (326)
+++|+.|+++++
T Consensus 170 l~~L~~L~L~~N 181 (597)
T 3oja_B 170 TTSLQNLQLSSN 181 (597)
T ss_dssp CTTCCEEECTTS
T ss_pred CCcCcEEECcCC
Confidence 346666666554
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.34 E-value=7.2e-11 Score=106.03 Aligned_cols=200 Identities=16% Similarity=0.150 Sum_probs=98.3
Q ss_pred cCCCccEEEcccCCCcccccccCCCCCCCCCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccCcCcceeccccccc
Q 020456 47 GFCDIEYLQLSDFPCLKEIWHGQALPVSFFNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNCDSIEEVLHLEELN 126 (326)
Q Consensus 47 ~~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~ 126 (326)
.+++|++|+++++. +..++ ...+++|++|++.++. ++.+++. .+..+++|++|+++++..- .... .
T Consensus 100 ~l~~L~~L~L~~n~-l~~l~------~~~~~~L~~L~l~~n~-i~~~~~~-~~~~l~~L~~L~l~~n~l~-~~~~----~ 165 (332)
T 2ft3_A 100 PLRKLQKLYISKNH-LVEIP------PNLPSSLVELRIHDNR-IRKVPKG-VFSGLRNMNCIEMGGNPLE-NSGF----E 165 (332)
T ss_dssp TCTTCCEEECCSSC-CCSCC------SSCCTTCCEEECCSSC-CCCCCSG-GGSSCSSCCEEECCSCCCB-GGGS----C
T ss_pred CcCCCCEEECCCCc-CCccC------ccccccCCEEECCCCc-cCccCHh-HhCCCccCCEEECCCCccc-cCCC----C
Confidence 35566666665433 22222 2233666666666653 4444332 2556777777777665321 1000 0
Q ss_pred cccCcCCCCCCCccEEecCCCccccccccccccccccccccEEeEecCCCCCccCcchhhhccCCCCCCceEEecccCcc
Q 020456 127 ADKEHISPLFPKLSELRLIDLPKLKRFCNFTENIIEMLMLWSLTIENCPNMETFVSNSVVHVTTDNKKPQKLTLEENFLL 206 (326)
Q Consensus 127 ~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~L~~L~l~~C~~l~~~~~~~~~~~~~~~~~L~~L~i~~~c~~ 206 (326)
...+ ... +|+.|+++++. ++.++. . .+++|++|+++++ .+....+..+. .++ +|++|++ .++.
T Consensus 166 --~~~~-~~l-~L~~L~l~~n~-l~~l~~---~--~~~~L~~L~l~~n-~i~~~~~~~l~-~l~---~L~~L~L-~~N~- 228 (332)
T 2ft3_A 166 --PGAF-DGL-KLNYLRISEAK-LTGIPK---D--LPETLNELHLDHN-KIQAIELEDLL-RYS---KLYRLGL-GHNQ- 228 (332)
T ss_dssp --TTSS-CSC-CCSCCBCCSSB-CSSCCS---S--SCSSCSCCBCCSS-CCCCCCTTSST-TCT---TCSCCBC-CSSC-
T ss_pred --cccc-cCC-ccCEEECcCCC-CCccCc---c--ccCCCCEEECCCC-cCCccCHHHhc-CCC---CCCEEEC-CCCc-
Confidence 0000 011 56666665543 444443 1 1257777777665 34444322222 333 6777777 6553
Q ss_pred cceeccccccccCccccceeeecccceeecccCCCcceecCCCccccCCcccEEEeccCCccccccCC-CC------CCC
Q 020456 207 ADQVQPLFDEKVGEEVKGCIVFERMNYLTLDCLPSLTSFCLGNYALEFPSLEQVVVRQCPKMKIFSQG-VL------DTP 279 (326)
Q Consensus 207 l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~-~~------~~~ 279 (326)
++.+.+.. ...+++|++|++.++ .++.++.... .+++|++|+++++ .++.++.. +. ..+
T Consensus 229 l~~~~~~~----------~~~l~~L~~L~L~~N-~l~~lp~~l~--~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~ 294 (332)
T 2ft3_A 229 IRMIENGS----------LSFLPTLRELHLDNN-KLSRVPAGLP--DLKLLQVVYLHTN-NITKVGVNDFCPVGFGVKRA 294 (332)
T ss_dssp CCCCCTTG----------GGGCTTCCEEECCSS-CCCBCCTTGG--GCTTCCEEECCSS-CCCBCCTTSSSCSSCCSSSC
T ss_pred CCcCChhH----------hhCCCCCCEEECCCC-cCeecChhhh--cCccCCEEECCCC-CCCccChhHccccccccccc
Confidence 32222111 234567777777765 4555554432 5677777777654 34444331 11 135
Q ss_pred CccEEEeccccC
Q 020456 280 MLNKVNVTEEEK 291 (326)
Q Consensus 280 ~L~~L~l~~c~~ 291 (326)
.|+++++++++-
T Consensus 295 ~l~~L~l~~N~~ 306 (332)
T 2ft3_A 295 YYNGISLFNNPV 306 (332)
T ss_dssp CBSEEECCSSSS
T ss_pred cccceEeecCcc
Confidence 567777776653
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=99.32 E-value=1.7e-14 Score=139.56 Aligned_cols=65 Identities=15% Similarity=0.215 Sum_probs=38.1
Q ss_pred ecccceeecccCCCcceecCCCccccCCcccEEEeccCCcccc--ccCCCCCCCCccEEEeccccCCCCc
Q 020456 228 FERMNYLTLDCLPSLTSFCLGNYALEFPSLEQVVVRQCPKMKI--FSQGVLDTPMLNKVNVTEEEKDDDD 295 (326)
Q Consensus 228 l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~--l~~~~~~~~~L~~L~l~~c~~~~~~ 295 (326)
+++|++|++.+|. ++..........+++|++|++++|+ ++. ++..+..+++|++|++++|. ..+.
T Consensus 462 ~~~L~~L~L~~n~-l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~-it~~ 528 (592)
T 3ogk_B 462 SPNVRWMLLGYVG-ESDEGLMEFSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR-ASMT 528 (592)
T ss_dssp CTTCCEEEECSCC-SSHHHHHHHHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB-CCTT
T ss_pred CccceEeeccCCC-CCHHHHHHHHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc-CCHH
Confidence 4667777776654 3221110111257888888888887 432 33333357888888888886 4433
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=99.32 E-value=6.4e-11 Score=107.27 Aligned_cols=203 Identities=16% Similarity=0.164 Sum_probs=127.0
Q ss_pred cCCCccEEEcccCCCcccccccCCCCCCCCCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccCcCcceeccccccc
Q 020456 47 GFCDIEYLQLSDFPCLKEIWHGQALPVSFFNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNCDSIEEVLHLEELN 126 (326)
Q Consensus 47 ~~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~ 126 (326)
.+++|++|+++++.....++... ...+++++++.+.++.+++.+.+.. ++.+++|++|+++++. +..++.....
T Consensus 52 ~l~~L~~L~Ls~N~i~~~i~~~~---f~~L~~l~~~l~~~~N~l~~l~~~~-f~~l~~L~~L~l~~n~-l~~~~~~~~~- 125 (350)
T 4ay9_X 52 GFGDLEKIEISQNDVLEVIEADV---FSNLPKLHEIRIEKANNLLYINPEA-FQNLPNLQYLLISNTG-IKHLPDVHKI- 125 (350)
T ss_dssp TCTTCCEEEEECCTTCCEECTTS---BCSCTTCCEEEEEEETTCCEECTTS-BCCCTTCCEEEEEEEC-CSSCCCCTTC-
T ss_pred CCCCCCEEECcCCCCCCccChhH---hhcchhhhhhhcccCCcccccCchh-hhhccccccccccccc-cccCCchhhc-
Confidence 47788888888766555433322 1345667776666666777665542 5678888888887753 3333221111
Q ss_pred cccCcCCCCCCCccEEecCCCcccccccccccccccc-ccccEEeEecCCCCCccCcchhhhccCCCCCCceEEecccCc
Q 020456 127 ADKEHISPLFPKLSELRLIDLPKLKRFCNFTENIIEM-LMLWSLTIENCPNMETFVSNSVVHVTTDNKKPQKLTLEENFL 205 (326)
Q Consensus 127 ~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~-~~L~~L~l~~C~~l~~~~~~~~~~~~~~~~~L~~L~i~~~c~ 205 (326)
...++..|++.++.+++.++.. .+..+ ..++.|+++++ +++.++. ..+. .. +|+++.+ .++.
T Consensus 126 --------~~~~l~~l~l~~~~~i~~l~~~--~f~~~~~~l~~L~L~~N-~i~~i~~-~~f~-~~---~L~~l~l-~~~n 188 (350)
T 4ay9_X 126 --------HSLQKVLLDIQDNINIHTIERN--SFVGLSFESVILWLNKN-GIQEIHN-SAFN-GT---QLDELNL-SDNN 188 (350)
T ss_dssp --------CBSSCEEEEEESCTTCCEECTT--SSTTSBSSCEEEECCSS-CCCEECT-TSST-TE---EEEEEEC-TTCT
T ss_pred --------ccchhhhhhhcccccccccccc--chhhcchhhhhhccccc-cccCCCh-hhcc-cc---chhHHhh-ccCC
Confidence 1135667777777777766542 12223 35677777663 5666532 2222 22 6777887 7777
Q ss_pred ccceeccccccccCccccceeeecccceeecccCCCcceecCCCccccCCcccEEEeccCCccccccCCCCCCCCccEEE
Q 020456 206 LADQVQPLFDEKVGEEVKGCIVFERMNYLTLDCLPSLTSFCLGNYALEFPSLEQVVVRQCPKMKIFSQGVLDTPMLNKVN 285 (326)
Q Consensus 206 ~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~~L~~L~ 285 (326)
.++.+.... ...+++|+.|++++. .++.++.. .+.+|++|.+.++..++.+|. +..+++|+.++
T Consensus 189 ~l~~i~~~~----------f~~l~~L~~LdLs~N-~l~~lp~~----~~~~L~~L~~l~~~~l~~lP~-l~~l~~L~~l~ 252 (350)
T 4ay9_X 189 NLEELPNDV----------FHGASGPVILDISRT-RIHSLPSY----GLENLKKLRARSTYNLKKLPT-LEKLVALMEAS 252 (350)
T ss_dssp TCCCCCTTT----------TTTEECCSEEECTTS-CCCCCCSS----SCTTCCEEECTTCTTCCCCCC-TTTCCSCCEEE
T ss_pred cccCCCHHH----------hccCcccchhhcCCC-CcCccChh----hhccchHhhhccCCCcCcCCC-chhCcChhhCc
Confidence 777664331 234678888888885 57777753 356888888888888888885 45688888888
Q ss_pred ecc
Q 020456 286 VTE 288 (326)
Q Consensus 286 l~~ 288 (326)
+.+
T Consensus 253 l~~ 255 (350)
T 4ay9_X 253 LTY 255 (350)
T ss_dssp CSC
T ss_pred CCC
Confidence 854
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.32 E-value=6.3e-11 Score=115.00 Aligned_cols=107 Identities=11% Similarity=0.151 Sum_probs=59.1
Q ss_pred ccccccccEEeEecCCCCCccCcchhhhccCCCCCCceEEecccCcccceeccccccccCccccceeeecccceeecccC
Q 020456 160 IIEMLMLWSLTIENCPNMETFVSNSVVHVTTDNKKPQKLTLEENFLLADQVQPLFDEKVGEEVKGCIVFERMNYLTLDCL 239 (326)
Q Consensus 160 ~~~~~~L~~L~l~~C~~l~~~~~~~~~~~~~~~~~L~~L~i~~~c~~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c 239 (326)
+..+++|+.|+++++ .+....+..+. .++ +|+.|++ .++. ++.+... ...+++|+.|++.++
T Consensus 250 l~~l~~L~~L~Ls~N-~l~~~~~~~~~-~l~---~L~~L~L-s~N~-l~~l~~~-----------~~~l~~L~~L~Ls~N 311 (597)
T 3oja_B 250 LLNYPGLVEVDLSYN-ELEKIMYHPFV-KMQ---RLERLYI-SNNR-LVALNLY-----------GQPIPTLKVLDLSHN 311 (597)
T ss_dssp GGGCTTCSEEECCSS-CCCEEESGGGT-TCS---SCCEEEC-TTSC-CCEEECS-----------SSCCTTCCEEECCSS
T ss_pred hccCCCCCEEECCCC-ccCCCCHHHhc-Ccc---CCCEEEC-CCCC-CCCCCcc-----------cccCCCCcEEECCCC
Confidence 445566666666654 34443232222 233 6666666 5543 3333211 234577777777775
Q ss_pred CCcceecCCCccccCCcccEEEeccCCccccccCCCCCCCCccEEEecccc
Q 020456 240 PSLTSFCLGNYALEFPSLEQVVVRQCPKMKIFSQGVLDTPMLNKVNVTEEE 290 (326)
Q Consensus 240 ~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~~L~~L~l~~c~ 290 (326)
. ++.++.... .+++|++|+++++. +..++ +..+++|++|++++++
T Consensus 312 ~-l~~i~~~~~--~l~~L~~L~L~~N~-l~~~~--~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 312 H-LLHVERNQP--QFDRLENLYLDHNS-IVTLK--LSTHHTLKNLTLSHND 356 (597)
T ss_dssp C-CCCCGGGHH--HHTTCSEEECCSSC-CCCCC--CCTTCCCSEEECCSSC
T ss_pred C-CCccCcccc--cCCCCCEEECCCCC-CCCcC--hhhcCCCCEEEeeCCC
Confidence 3 445554332 56788888887764 34344 3347788888887753
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.32 E-value=8.1e-11 Score=105.67 Aligned_cols=204 Identities=16% Similarity=0.198 Sum_probs=118.1
Q ss_pred CCCccEEEcccCCCcccccccCCCCCCCCCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccCcCcceecccccccc
Q 020456 48 FCDIEYLQLSDFPCLKEIWHGQALPVSFFNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNCDSIEEVLHLEELNA 127 (326)
Q Consensus 48 ~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~ 127 (326)
.++|++|++.++. +..+.... ...+++|++|++++|. ++.+.+.. +..+++|++|+++++. +..++..
T Consensus 53 ~~~l~~L~l~~n~-i~~~~~~~---~~~l~~L~~L~L~~n~-l~~~~~~~-~~~l~~L~~L~L~~n~-l~~l~~~----- 120 (332)
T 2ft3_A 53 SPDTTLLDLQNND-ISELRKDD---FKGLQHLYALVLVNNK-ISKIHEKA-FSPLRKLQKLYISKNH-LVEIPPN----- 120 (332)
T ss_dssp CTTCCEEECCSSC-CCEECTTT---TTTCTTCCEEECCSSC-CCEECGGG-STTCTTCCEEECCSSC-CCSCCSS-----
T ss_pred CCCCeEEECCCCc-CCccCHhH---hhCCCCCcEEECCCCc-cCccCHhH-hhCcCCCCEEECCCCc-CCccCcc-----
Confidence 4678888887654 34433322 2567888888888874 55654443 6678888888888754 3333211
Q ss_pred ccCcCCCCCCCccEEecCCCccccccccccccccccccccEEeEecCCCCCc--cCcchhhhccC---------------
Q 020456 128 DKEHISPLFPKLSELRLIDLPKLKRFCNFTENIIEMLMLWSLTIENCPNMET--FVSNSVVHVTT--------------- 190 (326)
Q Consensus 128 ~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~L~~L~l~~C~~l~~--~~~~~~~~~~~--------------- 190 (326)
.+++|+.|+++++. ++.++.. .+..+++|++|+++++. ++. ..+..+. .+.
T Consensus 121 -------~~~~L~~L~l~~n~-i~~~~~~--~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~-~l~L~~L~l~~n~l~~l~ 188 (332)
T 2ft3_A 121 -------LPSSLVELRIHDNR-IRKVPKG--VFSGLRNMNCIEMGGNP-LENSGFEPGAFD-GLKLNYLRISEAKLTGIP 188 (332)
T ss_dssp -------CCTTCCEEECCSSC-CCCCCSG--GGSSCSSCCEEECCSCC-CBGGGSCTTSSC-SCCCSCCBCCSSBCSSCC
T ss_pred -------ccccCCEEECCCCc-cCccCHh--HhCCCccCCEEECCCCc-cccCCCCccccc-CCccCEEECcCCCCCccC
Confidence 12466666666543 3333321 24455666666666542 221 1111111 000
Q ss_pred --CCCCCceEEecccCcccceeccccccccCccccceeeecccceeecccCCCcceecCCCccccCCcccEEEeccCCcc
Q 020456 191 --DNKKPQKLTLEENFLLADQVQPLFDEKVGEEVKGCIVFERMNYLTLDCLPSLTSFCLGNYALEFPSLEQVVVRQCPKM 268 (326)
Q Consensus 191 --~~~~L~~L~i~~~c~~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l 268 (326)
..++|++|++ .++. ++.+. ......+++|++|++.++ .++.++..... .+++|++|+++++ .+
T Consensus 189 ~~~~~~L~~L~l-~~n~-i~~~~----------~~~l~~l~~L~~L~L~~N-~l~~~~~~~~~-~l~~L~~L~L~~N-~l 253 (332)
T 2ft3_A 189 KDLPETLNELHL-DHNK-IQAIE----------LEDLLRYSKLYRLGLGHN-QIRMIENGSLS-FLPTLRELHLDNN-KL 253 (332)
T ss_dssp SSSCSSCSCCBC-CSSC-CCCCC----------TTSSTTCTTCSCCBCCSS-CCCCCCTTGGG-GCTTCCEEECCSS-CC
T ss_pred ccccCCCCEEEC-CCCc-CCccC----------HHHhcCCCCCCEEECCCC-cCCcCChhHhh-CCCCCCEEECCCC-cC
Confidence 0014555555 4432 22221 111345678999999885 45555443322 7899999999876 56
Q ss_pred ccccCCCCCCCCccEEEecccc
Q 020456 269 KIFSQGVLDTPMLNKVNVTEEE 290 (326)
Q Consensus 269 ~~l~~~~~~~~~L~~L~l~~c~ 290 (326)
+.+|.++..+++|++|+++++.
T Consensus 254 ~~lp~~l~~l~~L~~L~l~~N~ 275 (332)
T 2ft3_A 254 SRVPAGLPDLKLLQVVYLHTNN 275 (332)
T ss_dssp CBCCTTGGGCTTCCEEECCSSC
T ss_pred eecChhhhcCccCCEEECCCCC
Confidence 6788888889999999999874
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.30 E-value=2.5e-11 Score=122.09 Aligned_cols=97 Identities=8% Similarity=0.047 Sum_probs=61.6
Q ss_pred cccCCc--CCCCeeEEEecccCCcccceecCCCchhhhhhhhccccCCCccEEEcccCCCccc--ccccCC-C--CCCCC
Q 020456 4 FSQGIV--STPKLHEVQVTEKNEDELRHWEGNLNSTIQKCYEEMIGFCDIEYLQLSDFPCLKE--IWHGQA-L--PVSFF 76 (326)
Q Consensus 4 ~~~~~~--~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~--~~~~~~-l--~~~~~ 76 (326)
++..+. ++++|+.|.+.++... +... ..+..+++|++|+++++..+.. ++.... + ....+
T Consensus 481 iP~~l~f~~L~~L~~L~Ls~N~l~------~~iP-------~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l 547 (876)
T 4ecn_A 481 ENEELSWSNLKDLTDVELYNCPNM------TQLP-------DFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTG 547 (876)
T ss_dssp TTSCCCGGGCTTCCEEEEESCTTC------CSCC-------GGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTT
T ss_pred CChhhhhccCCCCCEEECcCCCCC------ccCh-------HHHhCCCCCCEEECcCCCCcccccchHHHHhhhhccccc
Confidence 556666 8999999999932211 1111 1244588999999988763332 332210 0 12356
Q ss_pred CCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccCc
Q 020456 77 NNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNCD 114 (326)
Q Consensus 77 ~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~ 114 (326)
++|++|++++|. ++.++....++++++|++|+++++.
T Consensus 548 ~~L~~L~Ls~N~-L~~ip~~~~l~~L~~L~~L~Ls~N~ 584 (876)
T 4ecn_A 548 PKIQIFYMGYNN-LEEFPASASLQKMVKLGLLDCVHNK 584 (876)
T ss_dssp TTCCEEECCSSC-CCBCCCHHHHTTCTTCCEEECTTSC
T ss_pred CCccEEEeeCCc-CCccCChhhhhcCCCCCEEECCCCC
Confidence 789999999884 5555541237788999999998865
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.30 E-value=9.3e-11 Score=118.32 Aligned_cols=37 Identities=8% Similarity=0.220 Sum_probs=19.6
Q ss_pred cCCcccEEEeccCCccccccC-CCCCCCCccEEEecccc
Q 020456 253 EFPSLEQVVVRQCPKMKIFSQ-GVLDTPMLNKVNVTEEE 290 (326)
Q Consensus 253 ~~~~L~~L~i~~c~~l~~l~~-~~~~~~~L~~L~l~~c~ 290 (326)
.+++|++|+++++ .+..++. .+..+++|++|+++++.
T Consensus 336 ~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N~ 373 (844)
T 3j0a_A 336 GLPKVAYIDLQKN-HIAIIQDQTFKFLEKLQTLDLRDNA 373 (844)
T ss_dssp SCTTCCEEECCSC-CCCCCCSSCSCSCCCCCEEEEETCC
T ss_pred CCCCCCEEECCCC-CCCccChhhhcCCCCCCEEECCCCC
Confidence 4555666666554 3333333 33446666666666653
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=99.30 E-value=1e-10 Score=103.22 Aligned_cols=202 Identities=12% Similarity=0.092 Sum_probs=143.5
Q ss_pred cccCCCccEEEcccCCCcccccccCCCCCCCCCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccCcCcceeccccc
Q 020456 45 MIGFCDIEYLQLSDFPCLKEIWHGQALPVSFFNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNCDSIEEVLHLEE 124 (326)
Q Consensus 45 ~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~ 124 (326)
...+++|+++++.+. .+..++. ...+++++|+++++. ++.+.+. .+..+++|++|+++++. +..+...
T Consensus 6 ~~~l~~l~~l~~~~~-~l~~ip~------~~~~~l~~L~L~~N~-l~~~~~~-~~~~l~~L~~L~L~~n~-l~~~~~~-- 73 (290)
T 1p9a_G 6 VSKVASHLEVNCDKR-NLTALPP------DLPKDTTILHLSENL-LYTFSLA-TLMPYTRLTQLNLDRAE-LTKLQVD-- 73 (290)
T ss_dssp EECSTTCCEEECTTS-CCSSCCS------CCCTTCCEEECTTSC-CSEEEGG-GGTTCTTCCEEECTTSC-CCEEECC--
T ss_pred ccccCCccEEECCCC-CCCcCCC------CCCCCCCEEEcCCCc-CCccCHH-HhhcCCCCCEEECCCCc-cCcccCC--
Confidence 345788899988763 3454333 344789999999985 5555443 37789999999999864 5444321
Q ss_pred cccccCcCCCCCCCccEEecCCCccccccccccccccccccccEEeEecCCCCCccCcchhhhccCCCCCCceEEecccC
Q 020456 125 LNADKEHISPLFPKLSELRLIDLPKLKRFCNFTENIIEMLMLWSLTIENCPNMETFVSNSVVHVTTDNKKPQKLTLEENF 204 (326)
Q Consensus 125 ~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~L~~L~l~~C~~l~~~~~~~~~~~~~~~~~L~~L~i~~~c 204 (326)
..+++|+.|++++. .++.++. .+..+++|+.|+++++ .++.+++.. ...++ +|++|++ .++
T Consensus 74 ---------~~l~~L~~L~Ls~N-~l~~l~~---~~~~l~~L~~L~l~~N-~l~~l~~~~-~~~l~---~L~~L~L-~~N 134 (290)
T 1p9a_G 74 ---------GTLPVLGTLDLSHN-QLQSLPL---LGQTLPALTVLDVSFN-RLTSLPLGA-LRGLG---ELQELYL-KGN 134 (290)
T ss_dssp ---------SCCTTCCEEECCSS-CCSSCCC---CTTTCTTCCEEECCSS-CCCCCCSST-TTTCT---TCCEEEC-TTS
T ss_pred ---------CCCCcCCEEECCCC-cCCcCch---hhccCCCCCEEECCCC-cCcccCHHH-HcCCC---CCCEEEC-CCC
Confidence 14579999999885 4666665 5677899999999886 576664333 33455 8999999 776
Q ss_pred cccceeccccccccCccccceeeecccceeecccCCCcceecCCCccccCCcccEEEeccCCccccccCCCCCCCCccEE
Q 020456 205 LLADQVQPLFDEKVGEEVKGCIVFERMNYLTLDCLPSLTSFCLGNYALEFPSLEQVVVRQCPKMKIFSQGVLDTPMLNKV 284 (326)
Q Consensus 205 ~~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~~L~~L 284 (326)
. ++.+.+.. ...+++|+.|++.++ .++.++..... .+++|++|.++++ .++.+|.++...++|+++
T Consensus 135 ~-l~~~~~~~----------~~~l~~L~~L~L~~N-~l~~l~~~~~~-~l~~L~~L~L~~N-~l~~ip~~~~~~~~L~~l 200 (290)
T 1p9a_G 135 E-LKTLPPGL----------LTPTPKLEKLSLANN-NLTELPAGLLN-GLENLDTLLLQEN-SLYTIPKGFFGSHLLPFA 200 (290)
T ss_dssp C-CCCCCTTT----------TTTCTTCCEEECTTS-CCSCCCTTTTT-TCTTCCEEECCSS-CCCCCCTTTTTTCCCSEE
T ss_pred C-CCccChhh----------cccccCCCEEECCCC-cCCccCHHHhc-CcCCCCEEECCCC-cCCccChhhcccccCCeE
Confidence 4 44433221 224588999999985 57777765432 6889999999765 577799888888899999
Q ss_pred EeccccC
Q 020456 285 NVTEEEK 291 (326)
Q Consensus 285 ~l~~c~~ 291 (326)
++.+++-
T Consensus 201 ~L~~Np~ 207 (290)
T 1p9a_G 201 FLHGNPW 207 (290)
T ss_dssp ECCSCCB
T ss_pred EeCCCCc
Confidence 9987743
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.30 E-value=2.2e-10 Score=111.34 Aligned_cols=56 Identities=14% Similarity=0.132 Sum_probs=39.7
Q ss_pred ecccceeecccCCCcceecCCCccccCCcccEEEeccCCccccccCCCCCCCCccEEEecccc
Q 020456 228 FERMNYLTLDCLPSLTSFCLGNYALEFPSLEQVVVRQCPKMKIFSQGVLDTPMLNKVNVTEEE 290 (326)
Q Consensus 228 l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~~L~~L~l~~c~ 290 (326)
+++|++|++.++ .++.++. .+++|++|+++++ .++.+|..+..+++|+.|++++++
T Consensus 240 l~~L~~L~Ls~N-~L~~lp~-----~~~~L~~L~Ls~N-~L~~lp~~l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 240 PSELKELMVSGN-RLTSLPM-----LPSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNP 295 (622)
T ss_dssp CTTCCEEECCSS-CCSCCCC-----CCTTCCEEECCSS-CCCSCCGGGGGSCTTCEEECCSCC
T ss_pred CCcCcEEECCCC-CCCcCCc-----ccccCcEEeCCCC-CCCcCCHHHhhccccCEEEecCCC
Confidence 466777777775 4555553 4568888888776 566777777778888888888773
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=8e-11 Score=103.33 Aligned_cols=184 Identities=14% Similarity=0.113 Sum_probs=131.7
Q ss_pred CCCCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccCcCcceeccccccccccCcCCCCCCCccEEecCCCcccccc
Q 020456 74 SFFNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNCDSIEEVLHLEELNADKEHISPLFPKLSELRLIDLPKLKRF 153 (326)
Q Consensus 74 ~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~ 153 (326)
...++|++|+++++. ++.+++.. +..+++|++|+++++. +..+.+. ....+++|+.|+++++..++.+
T Consensus 29 ~~~~~l~~L~l~~n~-i~~~~~~~-~~~~~~L~~L~l~~n~-l~~~~~~---------~~~~l~~L~~L~l~~n~~l~~~ 96 (285)
T 1ozn_A 29 GIPAASQRIFLHGNR-ISHVPAAS-FRACRNLTILWLHSNV-LARIDAA---------AFTGLALLEQLDLSDNAQLRSV 96 (285)
T ss_dssp TCCTTCSEEECTTSC-CCEECTTT-TTTCTTCCEEECCSSC-CCEECTT---------TTTTCTTCCEEECCSCTTCCCC
T ss_pred CCCCCceEEEeeCCc-CCccCHHH-cccCCCCCEEECCCCc-cceeCHh---------hcCCccCCCEEeCCCCCCcccc
Confidence 445899999999984 66665443 6789999999999874 4444211 1123579999999998777776
Q ss_pred ccccccccccccccEEeEecCCCCCccCcchhhhccCCCCCCceEEecccCcccceeccccccccCccccceeeecccce
Q 020456 154 CNFTENIIEMLMLWSLTIENCPNMETFVSNSVVHVTTDNKKPQKLTLEENFLLADQVQPLFDEKVGEEVKGCIVFERMNY 233 (326)
Q Consensus 154 ~~~~~~~~~~~~L~~L~l~~C~~l~~~~~~~~~~~~~~~~~L~~L~i~~~c~~l~~~~~~~~~~~~~~~~~~~~l~~L~~ 233 (326)
... .+..+++|++|+++++ .+..+.+.. ...++ +|++|++ .++. ++.+.... ...+++|++
T Consensus 97 ~~~--~~~~l~~L~~L~l~~n-~l~~~~~~~-~~~l~---~L~~L~l-~~n~-l~~~~~~~----------~~~l~~L~~ 157 (285)
T 1ozn_A 97 DPA--TFHGLGRLHTLHLDRC-GLQELGPGL-FRGLA---ALQYLYL-QDNA-LQALPDDT----------FRDLGNLTH 157 (285)
T ss_dssp CTT--TTTTCTTCCEEECTTS-CCCCCCTTT-TTTCT---TCCEEEC-CSSC-CCCCCTTT----------TTTCTTCCE
T ss_pred CHH--HhcCCcCCCEEECCCC-cCCEECHhH-hhCCc---CCCEEEC-CCCc-ccccCHhH----------hccCCCccE
Confidence 332 5677899999999987 455553333 33455 9999999 8775 33332211 234689999
Q ss_pred eecccCCCcceecCCCccccCCcccEEEeccCCccccccCCCCCCCCccEEEecccc
Q 020456 234 LTLDCLPSLTSFCLGNYALEFPSLEQVVVRQCPKMKIFSQGVLDTPMLNKVNVTEEE 290 (326)
Q Consensus 234 L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~~L~~L~l~~c~ 290 (326)
|++.++ .++.++..... .+++|++|+++++.--...|..+..+++|++|+++++.
T Consensus 158 L~l~~n-~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 212 (285)
T 1ozn_A 158 LFLHGN-RISSVPERAFR-GLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANN 212 (285)
T ss_dssp EECCSS-CCCEECTTTTT-TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EECCCC-cccccCHHHhc-CccccCEEECCCCcccccCHhHccCcccccEeeCCCCc
Confidence 999996 57777764332 68999999998876444446777789999999999983
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.28 E-value=3.1e-11 Score=107.06 Aligned_cols=182 Identities=16% Similarity=0.143 Sum_probs=121.9
Q ss_pred cCCCccEEEcccCCCcccccccCCCCCCCCCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccCcCcceeccccccc
Q 020456 47 GFCDIEYLQLSDFPCLKEIWHGQALPVSFFNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNCDSIEEVLHLEELN 126 (326)
Q Consensus 47 ~~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~ 126 (326)
.+++|++|+++++. +..++... ..+++|++|+++++. ++.......+..+++|++|+++++. +..+..
T Consensus 76 ~~~~L~~L~Ls~n~-i~~l~~~~----~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~----- 143 (306)
T 2z66_A 76 GTTSLKYLDLSFNG-VITMSSNF----LGLEQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHTH-TRVAFN----- 143 (306)
T ss_dssp SCSCCCEEECCSCS-EEEEEEEE----ETCTTCCEEECTTSE-EESSTTTTTTTTCTTCCEEECTTSC-CEECST-----
T ss_pred cccccCEEECCCCc-cccChhhc----CCCCCCCEEECCCCc-ccccccchhhhhccCCCEEECCCCc-CCccch-----
Confidence 47999999999765 34444333 467999999999984 5555442347789999999999875 322211
Q ss_pred cccCcCCCCCCCccEEecCCCcccc-ccccccccccccccccEEeEecCCCCCccCcchhhhccCCCCCCceEEecccCc
Q 020456 127 ADKEHISPLFPKLSELRLIDLPKLK-RFCNFTENIIEMLMLWSLTIENCPNMETFVSNSVVHVTTDNKKPQKLTLEENFL 205 (326)
Q Consensus 127 ~~~~~~~~~~~~L~~L~l~~c~~L~-~~~~~~~~~~~~~~L~~L~l~~C~~l~~~~~~~~~~~~~~~~~L~~L~i~~~c~ 205 (326)
.....+++|+.|+++++.--. .++. .+..+++|++|++++| .++...+..+. .++ +|++|++ .++.
T Consensus 144 ----~~~~~l~~L~~L~l~~n~l~~~~~~~---~~~~l~~L~~L~Ls~n-~l~~~~~~~~~-~l~---~L~~L~L-~~N~ 210 (306)
T 2z66_A 144 ----GIFNGLSSLEVLKMAGNSFQENFLPD---IFTELRNLTFLDLSQC-QLEQLSPTAFN-SLS---SLQVLNM-SHNN 210 (306)
T ss_dssp ----TTTTTCTTCCEEECTTCEEGGGEECS---CCTTCTTCCEEECTTS-CCCEECTTTTT-TCT---TCCEEEC-TTSC
T ss_pred ----hhcccCcCCCEEECCCCccccccchh---HHhhCcCCCEEECCCC-CcCCcCHHHhc-CCC---CCCEEEC-CCCc
Confidence 011235799999999875333 2343 5677899999999987 56666443333 445 8999999 8776
Q ss_pred ccceeccccccccCccccceeeecccceeecccCCCcceecCCCccccC-CcccEEEeccCC
Q 020456 206 LADQVQPLFDEKVGEEVKGCIVFERMNYLTLDCLPSLTSFCLGNYALEF-PSLEQVVVRQCP 266 (326)
Q Consensus 206 ~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~-~~L~~L~i~~c~ 266 (326)
++.+... ....+++|++|++.++.--...+.... .+ ++|++|++++++
T Consensus 211 -l~~~~~~----------~~~~l~~L~~L~L~~N~l~~~~~~~~~--~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 211 -FFSLDTF----------PYKCLNSLQVLDYSLNHIMTSKKQELQ--HFPSSLAFLNLTQND 259 (306)
T ss_dssp -CSBCCSG----------GGTTCTTCCEEECTTSCCCBCSSSSCC--CCCTTCCEEECTTCC
T ss_pred -cCccChh----------hccCcccCCEeECCCCCCcccCHHHHH--hhhccCCEEEccCCC
Confidence 3333221 133568999999999754333333222 55 489999998765
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=99.27 E-value=1.1e-12 Score=126.97 Aligned_cols=255 Identities=16% Similarity=0.204 Sum_probs=133.4
Q ss_pred cCCCCeeEEEecccCCcccc-------eecCCCchhhhhhhhccccCCCccEEEcccCCCcccccccCCCCCCCCCCccE
Q 020456 9 VSTPKLHEVQVTEKNEDELR-------HWEGNLNSTIQKCYEEMIGFCDIEYLQLSDFPCLKEIWHGQALPVSFFNNLEE 81 (326)
Q Consensus 9 ~~~~~L~~L~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~L~~ 81 (326)
..+++|+.|.+. +++... .|.+.....+... ...+++|++|+++++.- ....... + ...+++|++
T Consensus 63 ~~~~~L~~L~L~--~~~~~~~~~l~~~~~~~~~~~~l~~l---~~~~~~L~~L~L~~~~~-~~~~~~~-l-~~~~~~L~~ 134 (594)
T 2p1m_B 63 RRFPKVRSVELK--GKPHFADFNLVPDGWGGYVYPWIEAM---SSSYTWLEEIRLKRMVV-TDDCLEL-I-AKSFKNFKV 134 (594)
T ss_dssp HHCTTCCEEEEE--CSCGGGGGTCSCTTSCCBCHHHHHHH---HHHCTTCCEEEEESCBC-CHHHHHH-H-HHHCTTCCE
T ss_pred hhCCCceEEecc--CCCchhhcccccccccchhhHHHHHH---HHhCCCCCeEEeeCcEE-cHHHHHH-H-HHhCCCCcE
Confidence 357899999999 433222 2222221111111 12488999999998763 3211111 1 125799999
Q ss_pred EEEecCCCCCcCCchhHHhhCCCCCEEEEccCcCcceeccccccccccCcCCCCCCCccEEecCCCc-ccc--ccccccc
Q 020456 82 LEVDDCTNMSSAIPANLLRCLNNLRCLEVRNCDSIEEVLHLEELNADKEHISPLFPKLSELRLIDLP-KLK--RFCNFTE 158 (326)
Q Consensus 82 L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~-~L~--~~~~~~~ 158 (326)
|++.+|..++......+..++++|++|++++|. +.... ... ...+...+++|++|++.+|. .+. .+..
T Consensus 135 L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-i~~~~-~~~----l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~--- 205 (594)
T 2p1m_B 135 LVLSSCEGFSTDGLAAIAATCRNLKELDLRESD-VDDVS-GHW----LSHFPDTYTSLVSLNISCLASEVSFSALER--- 205 (594)
T ss_dssp EEEESCEEEEHHHHHHHHHHCTTCCEEECTTCE-EECCC-GGG----GGGSCTTCCCCCEEECTTCCSCCCHHHHHH---
T ss_pred EeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCc-cCCcc-hHH----HHHHhhcCCcCcEEEecccCCcCCHHHHHH---
Confidence 999999766553334456689999999999986 32210 000 11123356789999998875 111 1111
Q ss_pred cccccccccEEeEecCCCCCccCcchhhhccCCCCCCceEEecccC-------------------cccceeccccccccC
Q 020456 159 NIIEMLMLWSLTIENCPNMETFVSNSVVHVTTDNKKPQKLTLEENF-------------------LLADQVQPLFDEKVG 219 (326)
Q Consensus 159 ~~~~~~~L~~L~l~~C~~l~~~~~~~~~~~~~~~~~L~~L~i~~~c-------------------~~l~~~~~~~~~~~~ 219 (326)
....+++|++|++++|..+..+ ......++ +|++|.+ ..| ..++.+.........
T Consensus 206 l~~~~~~L~~L~L~~~~~~~~l--~~~~~~~~---~L~~L~l-~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~ 279 (594)
T 2p1m_B 206 LVTRCPNLKSLKLNRAVPLEKL--ATLLQRAP---QLEELGT-GGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPA 279 (594)
T ss_dssp HHHHCTTCCEEECCTTSCHHHH--HHHHHHCT---TCSEEEC-SBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGG
T ss_pred HHHhCCCCcEEecCCCCcHHHH--HHHHhcCC---cceEccc-ccccCccchhhHHHHHHHHhcCCCcccccCCcccchh
Confidence 1234688899998888655552 22333444 7777765 443 333333111000000
Q ss_pred ccccceeeecccceeecccCCCcceecCCCccccCCcccEEEeccCCccccccCCCCCCCCccEEEec
Q 020456 220 EEVKGCIVFERMNYLTLDCLPSLTSFCLGNYALEFPSLEQVVVRQCPKMKIFSQGVLDTPMLNKVNVT 287 (326)
Q Consensus 220 ~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~~L~~L~l~ 287 (326)
........+++|++|++.+|. ++..........+++|++|.+.+|..-..++.....+++|++|++.
T Consensus 280 ~l~~~~~~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~ 346 (594)
T 2p1m_B 280 YLPAVYSVCSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVF 346 (594)
T ss_dssp GGGGGHHHHTTCCEEECTTCC-CCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEE
T ss_pred hHHHHHHhhCCCCEEEccCCC-CCHHHHHHHHhcCCCcCEEeCcCccCHHHHHHHHHhCCCCCEEEEe
Confidence 111111245677777777776 4322111111145667777666652211122111124556666553
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.27 E-value=5.8e-12 Score=112.58 Aligned_cols=216 Identities=15% Similarity=0.117 Sum_probs=146.7
Q ss_pred cCCCccEEEcccCCCcccccccCCCCCCCCCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccCcCcceeccccccc
Q 020456 47 GFCDIEYLQLSDFPCLKEIWHGQALPVSFFNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNCDSIEEVLHLEELN 126 (326)
Q Consensus 47 ~~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~ 126 (326)
.+++|++|+++++. +..+.... ...+++|++|++++|. ++...+ +..+++|++|+++++. +..+.
T Consensus 32 ~~~~L~~L~L~~n~-l~~~~~~~---~~~l~~L~~L~Ls~n~-l~~~~~---~~~l~~L~~L~Ls~n~-l~~l~------ 96 (317)
T 3o53_A 32 SAWNVKELDLSGNP-LSQISAAD---LAPFTKLELLNLSSNV-LYETLD---LESLSTLRTLDLNNNY-VQELL------ 96 (317)
T ss_dssp TGGGCSEEECTTSC-CCCCCHHH---HTTCTTCCEEECTTSC-CEEEEE---ETTCTTCCEEECCSSE-EEEEE------
T ss_pred cCCCCCEEECcCCc-cCcCCHHH---hhCCCcCCEEECCCCc-CCcchh---hhhcCCCCEEECcCCc-ccccc------
Confidence 37899999999864 44333222 1578999999999985 555443 6689999999999874 44332
Q ss_pred cccCcCCCCCCCccEEecCCCccccccccccccccccccccEEeEecCCCCCccCcchhhhccCCCCCCceEEecccCcc
Q 020456 127 ADKEHISPLFPKLSELRLIDLPKLKRFCNFTENIIEMLMLWSLTIENCPNMETFVSNSVVHVTTDNKKPQKLTLEENFLL 206 (326)
Q Consensus 127 ~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~L~~L~l~~C~~l~~~~~~~~~~~~~~~~~L~~L~i~~~c~~ 206 (326)
..++|+.|+++++. ++.++. ..+++|++|+++++ .++.+.+..+. .++ +|++|++ .++.
T Consensus 97 --------~~~~L~~L~l~~n~-l~~~~~-----~~~~~L~~L~l~~N-~l~~~~~~~~~-~l~---~L~~L~L-s~N~- 155 (317)
T 3o53_A 97 --------VGPSIETLHAANNN-ISRVSC-----SRGQGKKNIYLANN-KITMLRDLDEG-CRS---RVQYLDL-KLNE- 155 (317)
T ss_dssp --------ECTTCCEEECCSSC-CSEEEE-----CCCSSCEEEECCSS-CCCSGGGBCTG-GGS---SEEEEEC-TTSC-
T ss_pred --------CCCCcCEEECCCCc-cCCcCc-----cccCCCCEEECCCC-CCCCccchhhh-ccC---CCCEEEC-CCCC-
Confidence 12699999999864 555543 34789999999986 56665443333 345 8999999 8775
Q ss_pred cceeccccccccCccccceeeecccceeecccCCCcceecCCCccccCCcccEEEeccCCccccccCCCCCCCCccEEEe
Q 020456 207 ADQVQPLFDEKVGEEVKGCIVFERMNYLTLDCLPSLTSFCLGNYALEFPSLEQVVVRQCPKMKIFSQGVLDTPMLNKVNV 286 (326)
Q Consensus 207 l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~~L~~L~l 286 (326)
+..+.... . ...+++|++|++.++. ++.++... .+++|++|+++++ .++.+|..+..+++|++|++
T Consensus 156 l~~~~~~~------~---~~~l~~L~~L~L~~N~-l~~~~~~~---~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~L 221 (317)
T 3o53_A 156 IDTVNFAE------L---AASSDTLEHLNLQYNF-IYDVKGQV---VFAKLKTLDLSSN-KLAFMGPEFQSAAGVTWISL 221 (317)
T ss_dssp CCEEEGGG------G---GGGTTTCCEEECTTSC-CCEEECCC---CCTTCCEEECCSS-CCCEECGGGGGGTTCSEEEC
T ss_pred CCcccHHH------H---hhccCcCCEEECCCCc-Cccccccc---ccccCCEEECCCC-cCCcchhhhcccCcccEEEC
Confidence 43332221 0 1245899999999965 66665433 5789999999776 56667777778899999999
Q ss_pred ccccCCCCccccccCchHHHHHHHHHhhh
Q 020456 287 TEEEKDDDDEGCWEGNLNDTIKQLFNEIV 315 (326)
Q Consensus 287 ~~c~~~~~~~~~~~~~~~~~l~~l~i~~~ 315 (326)
++|.-. .++.....+.+|+.+.+++.
T Consensus 222 ~~N~l~---~l~~~~~~l~~L~~L~l~~N 247 (317)
T 3o53_A 222 RNNKLV---LIEKALRFSQNLEHFDLRGN 247 (317)
T ss_dssp TTSCCC---EECTTCCCCTTCCEEECTTC
T ss_pred cCCccc---chhhHhhcCCCCCEEEccCC
Confidence 998322 23333333445555555543
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=5.5e-11 Score=113.88 Aligned_cols=37 Identities=5% Similarity=0.094 Sum_probs=24.2
Q ss_pred cCCcccEEEeccCCccccccCCCCCCCCccEEEecccc
Q 020456 253 EFPSLEQVVVRQCPKMKIFSQGVLDTPMLNKVNVTEEE 290 (326)
Q Consensus 253 ~~~~L~~L~i~~c~~l~~l~~~~~~~~~L~~L~l~~c~ 290 (326)
.+++|++|+++++ .++.+|..+..+++|++|++++|.
T Consensus 385 ~l~~L~~L~Ls~N-~l~~lp~~~~~~~~L~~L~Ls~N~ 421 (549)
T 2z81_A 385 TLKNLTSLDISRN-TFHPMPDSCQWPEKMRFLNLSSTG 421 (549)
T ss_dssp GCTTCCEEECTTC-CCCCCCSCCCCCTTCCEEECTTSC
T ss_pred cCCCCCEEECCCC-CCccCChhhcccccccEEECCCCC
Confidence 5667777777665 455566665566677777776663
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=99.27 E-value=7.2e-11 Score=105.06 Aligned_cols=35 Identities=31% Similarity=0.538 Sum_probs=16.0
Q ss_pred CCCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccC
Q 020456 75 FFNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNC 113 (326)
Q Consensus 75 ~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c 113 (326)
.+++|++|++++| .++.+.+ +..+++|++|+++++
T Consensus 61 ~l~~L~~L~L~~n-~i~~~~~---~~~l~~L~~L~L~~n 95 (308)
T 1h6u_A 61 YLNNLIGLELKDN-QITDLAP---LKNLTKITELELSGN 95 (308)
T ss_dssp GCTTCCEEECCSS-CCCCCGG---GTTCCSCCEEECCSC
T ss_pred ccCCCCEEEccCC-cCCCChh---HccCCCCCEEEccCC
Confidence 3455555555554 2333322 344555555555544
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=2.1e-10 Score=100.14 Aligned_cols=203 Identities=17% Similarity=0.183 Sum_probs=133.5
Q ss_pred CCCccEEEcccCCCcccccccCCCCCCCCCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccCcCcceecccccccc
Q 020456 48 FCDIEYLQLSDFPCLKEIWHGQALPVSFFNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNCDSIEEVLHLEELNA 127 (326)
Q Consensus 48 ~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~ 127 (326)
.++|++|+++++. +..+.... ...+++|++|++++| .++.+.+.. +..+++|++|+++++. +..+...
T Consensus 27 ~~~l~~L~ls~n~-l~~~~~~~---~~~l~~L~~L~l~~n-~l~~~~~~~-~~~l~~L~~L~L~~n~-l~~~~~~----- 94 (276)
T 2z62_A 27 PFSTKNLDLSFNP-LRHLGSYS---FFSFPELQVLDLSRC-EIQTIEDGA-YQSLSHLSTLILTGNP-IQSLALG----- 94 (276)
T ss_dssp CTTCCEEECTTCC-CCEECTTT---TTTCTTCSEEECTTC-CCCEECTTT-TTTCTTCCEEECTTCC-CCEECTT-----
T ss_pred CCCccEEECCCCc-ccccCHhH---hccccCCcEEECCCC-cCCccCHHH-ccCCcCCCEEECCCCc-cCccChh-----
Confidence 3579999998764 44443322 256789999999998 466665532 6789999999999865 3333210
Q ss_pred ccCcCCCCCCCccEEecCCCccccccccccccccccccccEEeEecCCCCCccC-cchhhhccCCCCCCceEEecccCcc
Q 020456 128 DKEHISPLFPKLSELRLIDLPKLKRFCNFTENIIEMLMLWSLTIENCPNMETFV-SNSVVHVTTDNKKPQKLTLEENFLL 206 (326)
Q Consensus 128 ~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~L~~L~l~~C~~l~~~~-~~~~~~~~~~~~~L~~L~i~~~c~~ 206 (326)
....+++|+.|++.++. +..+... .+..+++|++|+++++ .++... +.. ...++ +|++|++ .++.
T Consensus 95 ----~~~~l~~L~~L~l~~n~-l~~~~~~--~~~~l~~L~~L~l~~n-~l~~~~l~~~-~~~l~---~L~~L~L-s~N~- 160 (276)
T 2z62_A 95 ----AFSGLSSLQKLVAVETN-LASLENF--PIGHLKTLKELNVAHN-LIQSFKLPEY-FSNLT---NLEHLDL-SSNK- 160 (276)
T ss_dssp ----TTTTCTTCCEEECTTSC-CCCSTTC--CCTTCTTCCEEECCSS-CCCCCCCCGG-GGGCT---TCCEEEC-CSSC-
T ss_pred ----hhcCCccccEEECCCCC-ccccCch--hcccCCCCCEEECcCC-ccceecCchh-hccCC---CCCEEEC-CCCC-
Confidence 11235799999998764 4443321 3567899999999886 455532 333 33455 8999999 7775
Q ss_pred cceeccccccccCccccceeeecccc----eeecccCCCcceecCCCccccCCcccEEEeccCCccccccCC-CCCCCCc
Q 020456 207 ADQVQPLFDEKVGEEVKGCIVFERMN----YLTLDCLPSLTSFCLGNYALEFPSLEQVVVRQCPKMKIFSQG-VLDTPML 281 (326)
Q Consensus 207 l~~~~~~~~~~~~~~~~~~~~l~~L~----~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~-~~~~~~L 281 (326)
++.+.... ...+++|+ +|++.+. .++.++.... ...+|++|+++++. ++.+|.. +..+++|
T Consensus 161 l~~~~~~~----------~~~l~~L~~l~l~L~ls~n-~l~~~~~~~~--~~~~L~~L~L~~n~-l~~~~~~~~~~l~~L 226 (276)
T 2z62_A 161 IQSIYCTD----------LRVLHQMPLLNLSLDLSLN-PMNFIQPGAF--KEIRLKELALDTNQ-LKSVPDGIFDRLTSL 226 (276)
T ss_dssp CCEECGGG----------GHHHHTCTTCCEEEECCSS-CCCEECTTSS--CSCCEEEEECCSSC-CSCCCTTTTTTCCSC
T ss_pred CCcCCHHH----------hhhhhhccccceeeecCCC-cccccCcccc--CCCcccEEECCCCc-eeecCHhHhcccccc
Confidence 44432221 22345555 6778774 4666665444 45589999998775 7777764 4578999
Q ss_pred cEEEecccc
Q 020456 282 NKVNVTEEE 290 (326)
Q Consensus 282 ~~L~l~~c~ 290 (326)
++|++++++
T Consensus 227 ~~L~l~~N~ 235 (276)
T 2z62_A 227 QKIWLHTNP 235 (276)
T ss_dssp CEEECCSSC
T ss_pred cEEEccCCc
Confidence 999999764
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=3.4e-11 Score=115.39 Aligned_cols=249 Identities=16% Similarity=0.159 Sum_probs=130.6
Q ss_pred CCcCCCCeeEEEecccCCcccceecCCCchhhhhhhhccccCCCccEEEcccCCCcccccccCCCC--CCCCCCccEEEE
Q 020456 7 GIVSTPKLHEVQVTEKNEDELRHWEGNLNSTIQKCYEEMIGFCDIEYLQLSDFPCLKEIWHGQALP--VSFFNNLEELEV 84 (326)
Q Consensus 7 ~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~--~~~~~~L~~L~l 84 (326)
....+++|+.+.+.++...+...+.... .+.+..+++|+.|.+.++..-.. .....++ ...+++|++|++
T Consensus 246 ~~~~~~~L~~l~l~~~~~~~~~~~~~~~-------~~~~~~l~~L~~L~l~~~~i~~~-~~~~~l~~~~~~~~~L~~L~l 317 (549)
T 2z81_A 246 LLRYILELSEVEFDDCTLNGLGDFNPSE-------SDVVSELGKVETVTIRRLHIPQF-YLFYDLSTVYSLLEKVKRITV 317 (549)
T ss_dssp GGGGCTTCCEEEEESCEEECCSCCCCCT-------TTCCCCCTTCCEEEEESCBCSCG-GGSCCCCHHHHHSTTCCEEEE
T ss_pred Hhhhhccccccccccccccccccccccc-------hhhhhhhcccccccccccccchh-hhcccchhhhhhcccceEEEe
Confidence 3457788999998854433333332110 11234477888888776542111 0000000 022467888888
Q ss_pred ecCCCCCcCCchhHHhhCCCCCEEEEccCcCcceeccccccccccCcCCCCCCCccEEecCCCccccccccccccccccc
Q 020456 85 DDCTNMSSAIPANLLRCLNNLRCLEVRNCDSIEEVLHLEELNADKEHISPLFPKLSELRLIDLPKLKRFCNFTENIIEML 164 (326)
Q Consensus 85 ~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~ 164 (326)
.++. +..+ |..+.+++++|++|+++++.....++.... ....+++|+.|+++++. ++.++..+..+..++
T Consensus 318 ~~n~-l~~i-p~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-------~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~~l~ 387 (549)
T 2z81_A 318 ENSK-VFLV-PCSFSQHLKSLEFLDLSENLMVEEYLKNSA-------CKGAWPSLQTLVLSQNH-LRSMQKTGEILLTLK 387 (549)
T ss_dssp ESSC-CCCC-CHHHHHHCTTCCEEECCSSCCCHHHHHHHT-------CTTSSTTCCEEECTTSC-CCCHHHHHHHGGGCT
T ss_pred ccCc-cccC-CHHHHhcCccccEEEccCCccccccccchh-------hhhccccCcEEEccCCc-ccccccchhhhhcCC
Confidence 8774 5444 334446788888888877653322211000 01134566666666652 443331111244566
Q ss_pred cccEEeEecCCCCCccCcchhhhccCCCCCCceEEecccCcccceeccc-----------cccccCccccceeeecccce
Q 020456 165 MLWSLTIENCPNMETFVSNSVVHVTTDNKKPQKLTLEENFLLADQVQPL-----------FDEKVGEEVKGCIVFERMNY 233 (326)
Q Consensus 165 ~L~~L~l~~C~~l~~~~~~~~~~~~~~~~~L~~L~i~~~c~~l~~~~~~-----------~~~~~~~~~~~~~~l~~L~~ 233 (326)
+|++|++++| .++.++ ..+ ..+. +|++|++ .++. ++.+... .+...+. ...+++|++
T Consensus 388 ~L~~L~Ls~N-~l~~lp-~~~-~~~~---~L~~L~L-s~N~-l~~l~~~~~~~L~~L~Ls~N~l~~~----~~~l~~L~~ 455 (549)
T 2z81_A 388 NLTSLDISRN-TFHPMP-DSC-QWPE---KMRFLNL-SSTG-IRVVKTCIPQTLEVLDVSNNNLDSF----SLFLPRLQE 455 (549)
T ss_dssp TCCEEECTTC-CCCCCC-SCC-CCCT---TCCEEEC-TTSC-CSCCCTTSCTTCSEEECCSSCCSCC----CCCCTTCCE
T ss_pred CCCEEECCCC-CCccCC-hhh-cccc---cccEEEC-CCCC-cccccchhcCCceEEECCCCChhhh----cccCChhcE
Confidence 6666666665 344432 111 1222 5555655 5543 2211100 0000000 124678888
Q ss_pred eecccCCCcceecCCCccccCCcccEEEeccCCccccccC-CCCCCCCccEEEecccc
Q 020456 234 LTLDCLPSLTSFCLGNYALEFPSLEQVVVRQCPKMKIFSQ-GVLDTPMLNKVNVTEEE 290 (326)
Q Consensus 234 L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~-~~~~~~~L~~L~l~~c~ 290 (326)
|++.++ .++.++.. . .+++|++|+++++ .++.++. .+..+++|++|++++|+
T Consensus 456 L~Ls~N-~l~~ip~~-~--~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 508 (549)
T 2z81_A 456 LYISRN-KLKTLPDA-S--LFPVLLVMKISRN-QLKSVPDGIFDRLTSLQKIWLHTNP 508 (549)
T ss_dssp EECCSS-CCSSCCCG-G--GCTTCCEEECCSS-CCCCCCTTGGGGCTTCCEEECCSSC
T ss_pred EECCCC-ccCcCCCc-c--cCccCCEEecCCC-ccCCcCHHHHhcCcccCEEEecCCC
Confidence 888886 56666652 2 6788999999876 4555554 45678899999998884
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.25 E-value=7.5e-10 Score=111.70 Aligned_cols=67 Identities=13% Similarity=0.139 Sum_probs=43.1
Q ss_pred cccCCCccEEEcccCCCcccccccCCCCCCCCCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccCc
Q 020456 45 MIGFCDIEYLQLSDFPCLKEIWHGQALPVSFFNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNCD 114 (326)
Q Consensus 45 ~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~ 114 (326)
+..+++|++|+++++.....++... ....+++|++|++++|. ++...+...++++++|++|+++++.
T Consensus 93 ~~~l~~L~~L~Ls~n~l~~~~~~~~--~~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~L~~L~~L~Ls~N~ 159 (844)
T 3j0a_A 93 FQGLFHLFELRLYFCGLSDAVLKDG--YFRNLKALTRLDLSKNQ-IRSLYLHPSFGKLNSLKSIDFSSNQ 159 (844)
T ss_dssp SCSCSSCCCEECTTCCCSSCCSTTC--CCSSCSSCCEEEEESCC-CCCCCCCGGGGTCSSCCEEEEESSC
T ss_pred ccCCcccCEeeCcCCCCCcccccCc--cccccCCCCEEECCCCc-ccccccchhHhhCCCCCEEECCCCc
Confidence 3446777777777664433222221 12567889999998885 4455443347789999999988864
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=99.25 E-value=2.3e-10 Score=107.59 Aligned_cols=201 Identities=14% Similarity=0.196 Sum_probs=107.2
Q ss_pred cCCCccEEEcccCCCcccccccCCCCCCCCCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccCcCcceeccccccc
Q 020456 47 GFCDIEYLQLSDFPCLKEIWHGQALPVSFFNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNCDSIEEVLHLEELN 126 (326)
Q Consensus 47 ~~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~ 126 (326)
.+++|++|++.++.. ..+.. ...+++|++|++++|. ++...+ +..+++|++|++++|. +..+.....+.
T Consensus 88 ~l~~L~~L~l~~n~l-~~~~~-----~~~l~~L~~L~L~~n~-l~~~~~---~~~l~~L~~L~l~~n~-l~~~~~~~~l~ 156 (466)
T 1o6v_A 88 NLTKLVDILMNNNQI-ADITP-----LANLTNLTGLTLFNNQ-ITDIDP---LKNLTNLNRLELSSNT-ISDISALSGLT 156 (466)
T ss_dssp TCTTCCEEECCSSCC-CCCGG-----GTTCTTCCEEECCSSC-CCCCGG---GTTCTTCSEEEEEEEE-ECCCGGGTTCT
T ss_pred ccccCCEEECCCCcc-ccChh-----hcCCCCCCEEECCCCC-CCCChH---HcCCCCCCEEECCCCc-cCCChhhccCC
Confidence 366666776665432 22121 2456777777777763 444432 5567777777776653 22221111000
Q ss_pred c--------c--cCcCCCCCCCccEEecCCCccccccccccccccccccccEEeEecCCCCCccCcchhhhccCCCCCCc
Q 020456 127 A--------D--KEHISPLFPKLSELRLIDLPKLKRFCNFTENIIEMLMLWSLTIENCPNMETFVSNSVVHVTTDNKKPQ 196 (326)
Q Consensus 127 ~--------~--~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~L~~L~l~~C~~l~~~~~~~~~~~~~~~~~L~ 196 (326)
. . .......+++|+.|+++++. ++.++ .+..+++|++|++++|. +....+ ...++ +|+
T Consensus 157 ~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~----~l~~l~~L~~L~l~~n~-l~~~~~---~~~l~---~L~ 224 (466)
T 1o6v_A 157 SLQQLSFGNQVTDLKPLANLTTLERLDISSNK-VSDIS----VLAKLTNLESLIATNNQ-ISDITP---LGILT---NLD 224 (466)
T ss_dssp TCSEEEEEESCCCCGGGTTCTTCCEEECCSSC-CCCCG----GGGGCTTCSEEECCSSC-CCCCGG---GGGCT---TCC
T ss_pred cccEeecCCcccCchhhccCCCCCEEECcCCc-CCCCh----hhccCCCCCEEEecCCc-cccccc---ccccC---CCC
Confidence 0 0 00001123456666665543 33332 34456666677666653 333322 12233 677
Q ss_pred eEEecccCcccceeccccccccCccccceeeecccceeecccCCCcceecCCCccccCCcccEEEeccCCccccccCCCC
Q 020456 197 KLTLEENFLLADQVQPLFDEKVGEEVKGCIVFERMNYLTLDCLPSLTSFCLGNYALEFPSLEQVVVRQCPKMKIFSQGVL 276 (326)
Q Consensus 197 ~L~i~~~c~~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~ 276 (326)
+|++ .+|. ++.+. ....+++|++|++.++. ++.++. ...+++|++|.++++. +..++. +.
T Consensus 225 ~L~l-~~n~-l~~~~------------~l~~l~~L~~L~l~~n~-l~~~~~---~~~l~~L~~L~l~~n~-l~~~~~-~~ 284 (466)
T 1o6v_A 225 ELSL-NGNQ-LKDIG------------TLASLTNLTDLDLANNQ-ISNLAP---LSGLTKLTELKLGANQ-ISNISP-LA 284 (466)
T ss_dssp EEEC-CSSC-CCCCG------------GGGGCTTCSEEECCSSC-CCCCGG---GTTCTTCSEEECCSSC-CCCCGG-GT
T ss_pred EEEC-CCCC-cccch------------hhhcCCCCCEEECCCCc-cccchh---hhcCCCCCEEECCCCc-cCcccc-cc
Confidence 7777 6654 22221 12346788888888864 333332 1267889999997764 444444 55
Q ss_pred CCCCccEEEecccc
Q 020456 277 DTPMLNKVNVTEEE 290 (326)
Q Consensus 277 ~~~~L~~L~l~~c~ 290 (326)
.+++|++|++++|.
T Consensus 285 ~l~~L~~L~L~~n~ 298 (466)
T 1o6v_A 285 GLTALTNLELNENQ 298 (466)
T ss_dssp TCTTCSEEECCSSC
T ss_pred CCCccCeEEcCCCc
Confidence 68899999998874
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.23 E-value=2.4e-11 Score=115.10 Aligned_cols=215 Identities=15% Similarity=0.115 Sum_probs=146.7
Q ss_pred cCCCccEEEcccCCCcccccccCCCCCCCCCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccCcCcceeccccccc
Q 020456 47 GFCDIEYLQLSDFPCLKEIWHGQALPVSFFNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNCDSIEEVLHLEELN 126 (326)
Q Consensus 47 ~~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~ 126 (326)
.+++|++|+++++. +..+++.. ...+++|++|++++|. ++..++ +..+++|++|++++|. +..++.
T Consensus 32 ~~~~L~~L~Ls~n~-l~~~~~~~---~~~l~~L~~L~Ls~N~-l~~~~~---l~~l~~L~~L~Ls~N~-l~~l~~----- 97 (487)
T 3oja_A 32 SAWNVKELDLSGNP-LSQISAAD---LAPFTKLELLNLSSNV-LYETLD---LESLSTLRTLDLNNNY-VQELLV----- 97 (487)
T ss_dssp TGGGCCEEECCSSC-CCCCCGGG---GTTCTTCCEEECTTSC-CEEEEE---CTTCTTCCEEECCSSE-EEEEEE-----
T ss_pred cCCCccEEEeeCCc-CCCCCHHH---HhCCCCCCEEEeeCCC-CCCCcc---cccCCCCCEEEecCCc-CCCCCC-----
Confidence 46799999999865 44443322 2578999999999985 555544 6689999999999874 444421
Q ss_pred cccCcCCCCCCCccEEecCCCccccccccccccccccccccEEeEecCCCCCccCcchhhhccCCCCCCceEEecccCcc
Q 020456 127 ADKEHISPLFPKLSELRLIDLPKLKRFCNFTENIIEMLMLWSLTIENCPNMETFVSNSVVHVTTDNKKPQKLTLEENFLL 206 (326)
Q Consensus 127 ~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~L~~L~l~~C~~l~~~~~~~~~~~~~~~~~L~~L~i~~~c~~ 206 (326)
.++|+.|+++++. +..++. ..+++|+.|++++| .+....+..+. .++ +|+.|++ .++.
T Consensus 98 ---------~~~L~~L~L~~N~-l~~~~~-----~~l~~L~~L~L~~N-~l~~~~~~~~~-~l~---~L~~L~L-s~N~- 155 (487)
T 3oja_A 98 ---------GPSIETLHAANNN-ISRVSC-----SRGQGKKNIYLANN-KITMLRDLDEG-CRS---RVQYLDL-KLNE- 155 (487)
T ss_dssp ---------CTTCCEEECCSSC-CCCEEE-----CCCSSCEEEECCSS-CCCSGGGBCGG-GGS---SEEEEEC-TTSC-
T ss_pred ---------CCCcCEEECcCCc-CCCCCc-----cccCCCCEEECCCC-CCCCCCchhhc-CCC---CCCEEEC-CCCC-
Confidence 2699999999874 544443 34789999999987 46665444433 355 8999999 7765
Q ss_pred cceeccccccccCccccceeeecccceeecccCCCcceecCCCccccCCcccEEEeccCCccccccCCCCCCCCccEEEe
Q 020456 207 ADQVQPLFDEKVGEEVKGCIVFERMNYLTLDCLPSLTSFCLGNYALEFPSLEQVVVRQCPKMKIFSQGVLDTPMLNKVNV 286 (326)
Q Consensus 207 l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~~L~~L~l 286 (326)
++.+.+.. . ...+++|++|++.++. ++.++... .+++|++|+++++ .++.+|..+..+++|++|++
T Consensus 156 l~~~~~~~------l---~~~l~~L~~L~Ls~N~-l~~~~~~~---~l~~L~~L~Ls~N-~l~~~~~~~~~l~~L~~L~L 221 (487)
T 3oja_A 156 IDTVNFAE------L---AASSDTLEHLNLQYNF-IYDVKGQV---VFAKLKTLDLSSN-KLAFMGPEFQSAAGVTWISL 221 (487)
T ss_dssp CCEEEGGG------G---GGGTTTCCEEECTTSC-CCEEECCC---CCTTCCEEECCSS-CCCEECGGGGGGTTCSEEEC
T ss_pred CCCcChHH------H---hhhCCcccEEecCCCc-cccccccc---cCCCCCEEECCCC-CCCCCCHhHcCCCCccEEEe
Confidence 43332221 0 1146899999999965 66665433 5889999999776 56667777778899999999
Q ss_pred ccccCCCCccccccCchHHHHHHHHHhh
Q 020456 287 TEEEKDDDDEGCWEGNLNDTIKQLFNEI 314 (326)
Q Consensus 287 ~~c~~~~~~~~~~~~~~~~~l~~l~i~~ 314 (326)
++|.-. .++.....+++|+.+.+++
T Consensus 222 s~N~l~---~lp~~l~~l~~L~~L~l~~ 246 (487)
T 3oja_A 222 RNNKLV---LIEKALRFSQNLEHFDLRG 246 (487)
T ss_dssp TTSCCC---EECTTCCCCTTCCEEECTT
T ss_pred cCCcCc---ccchhhccCCCCCEEEcCC
Confidence 998422 2333333334444444444
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=99.22 E-value=9.4e-10 Score=103.17 Aligned_cols=80 Identities=15% Similarity=0.075 Sum_probs=37.8
Q ss_pred ccceeecccCCCcceecCCCccccCCcccEEEeccCCccccccCCCCCCCCccEEEeccccCCCCccccccCchH-----
Q 020456 230 RMNYLTLDCLPSLTSFCLGNYALEFPSLEQVVVRQCPKMKIFSQGVLDTPMLNKVNVTEEEKDDDDEGCWEGNLN----- 304 (326)
Q Consensus 230 ~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~----- 304 (326)
+|++|++.++ .++.++. .+++|++|+++++ .++.+|. .+++|++|+++++.-.....++.....+
T Consensus 318 ~L~~L~Ls~N-~l~~lp~-----~~~~L~~L~L~~N-~l~~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~ 387 (454)
T 1jl5_A 318 SLEELNVSNN-KLIELPA-----LPPRLERLIASFN-HLAEVPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSH 387 (454)
T ss_dssp TCCEEECCSS-CCSCCCC-----CCTTCCEEECCSS-CCSCCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC-
T ss_pred cCCEEECCCC-ccccccc-----cCCcCCEEECCCC-ccccccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhccc
Confidence 5666666653 3444332 3578888888776 5666776 3788999999887433211222222222
Q ss_pred --------HHHHHHHHhhhhhhh
Q 020456 305 --------DTIKQLFNEIVSINE 319 (326)
Q Consensus 305 --------~~l~~l~i~~~~~~~ 319 (326)
.+|+.+.+++..+.+
T Consensus 388 ~~~i~~~~~~L~~L~ls~N~l~~ 410 (454)
T 1jl5_A 388 LAEVPELPQNLKQLHVETNPLRE 410 (454)
T ss_dssp -----------------------
T ss_pred ccccccccCcCCEEECCCCcCCc
Confidence 678888777765543
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=9.1e-11 Score=115.40 Aligned_cols=89 Identities=10% Similarity=0.049 Sum_probs=55.4
Q ss_pred eecccceeecccCCCcceecCCCccccCCcccEEEeccCCc--cccccCCCCCCCCccEEEeccccCCCCccccccCchH
Q 020456 227 VFERMNYLTLDCLPSLTSFCLGNYALEFPSLEQVVVRQCPK--MKIFSQGVLDTPMLNKVNVTEEEKDDDDEGCWEGNLN 304 (326)
Q Consensus 227 ~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~--l~~l~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~ 304 (326)
.+++|++|++.++. ++.++..... .+++|++|.+.++.- +...|..+..+++|++|++++|.-. ...+..+..+
T Consensus 428 ~l~~L~~L~Ls~n~-l~~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~--~i~~~~~~~l 503 (680)
T 1ziw_A 428 GLENIFEIYLSYNK-YLQLTRNSFA-LVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIA--NINDDMLEGL 503 (680)
T ss_dssp TCTTCCEEECCSCS-EEECCTTTTT-TCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCC--CCCTTTTTTC
T ss_pred CcccccEEecCCCC-cceeChhhhh-cCcccccchhccccccccccCCcccccCCCCCEEECCCCCCC--cCChhhhccc
Confidence 45677777777765 3444333322 678888888877652 3456777778899999999887422 1122223345
Q ss_pred HHHHHHHHhhhhhhh
Q 020456 305 DTIKQLFNEIVSINE 319 (326)
Q Consensus 305 ~~l~~l~i~~~~~~~ 319 (326)
.+|+.+.+++..+.+
T Consensus 504 ~~L~~L~Ls~N~l~~ 518 (680)
T 1ziw_A 504 EKLEILDLQHNNLAR 518 (680)
T ss_dssp TTCCEEECCSSCCGG
T ss_pred cccCEEeCCCCCccc
Confidence 667777776655444
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.21 E-value=1.5e-09 Score=104.49 Aligned_cols=58 Identities=21% Similarity=0.214 Sum_probs=29.2
Q ss_pred CCCccEEEcccCCCcccccccCCCCCCCCCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccC
Q 020456 48 FCDIEYLQLSDFPCLKEIWHGQALPVSFFNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNC 113 (326)
Q Consensus 48 ~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c 113 (326)
+++|++|+++++. +..++. ..+++|++|+++++. ++.+.....++++++|++|+++++
T Consensus 99 l~~L~~L~Ls~N~-l~~lp~------~~l~~L~~L~Ls~N~-l~~l~~p~~~~~l~~L~~L~L~~n 156 (562)
T 3a79_B 99 NQDLEYLDVSHNR-LQNISC------CPMASLRHLDLSFND-FDVLPVCKEFGNLTKLTFLGLSAA 156 (562)
T ss_dssp CTTCCEEECTTSC-CCEECS------CCCTTCSEEECCSSC-CSBCCCCGGGGGCTTCCEEEEECS
T ss_pred CCCCCEEECCCCc-CCccCc------cccccCCEEECCCCC-ccccCchHhhcccCcccEEecCCC
Confidence 5666666666543 233221 245666666666653 434332122555666666666554
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.21 E-value=6.9e-10 Score=96.66 Aligned_cols=199 Identities=16% Similarity=0.143 Sum_probs=124.8
Q ss_pred CccEEEcccCCCcccccccCCCCCCCCCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccCcCcceecccccccccc
Q 020456 50 DIEYLQLSDFPCLKEIWHGQALPVSFFNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNCDSIEEVLHLEELNADK 129 (326)
Q Consensus 50 ~L~~L~l~~~~~l~~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~ 129 (326)
+.+++++.+. .+..++. ...++|++|+++++. ++.+++. .+..+++|++|+++++. +..++.
T Consensus 17 ~~~~l~~~~~-~l~~ip~------~~~~~l~~L~l~~n~-l~~~~~~-~~~~l~~L~~L~l~~n~-l~~i~~-------- 78 (270)
T 2o6q_A 17 NKNSVDCSSK-KLTAIPS------NIPADTKKLDLQSNK-LSSLPSK-AFHRLTKLRLLYLNDNK-LQTLPA-------- 78 (270)
T ss_dssp TTTEEECTTS-CCSSCCS------CCCTTCSEEECCSSC-CSCCCTT-SSSSCTTCCEEECCSSC-CSCCCT--------
T ss_pred CCCEEEccCC-CCCccCC------CCCCCCCEEECcCCC-CCeeCHH-HhcCCCCCCEEECCCCc-cCeeCh--------
Confidence 4667776643 3444332 233678888888874 5555543 25678888888888754 333311
Q ss_pred CcCCCCCCCccEEecCCCccccccccccccccccccccEEeEecCCCCCccCcchhhhccCCCCCCceEEecccCcccce
Q 020456 130 EHISPLFPKLSELRLIDLPKLKRFCNFTENIIEMLMLWSLTIENCPNMETFVSNSVVHVTTDNKKPQKLTLEENFLLADQ 209 (326)
Q Consensus 130 ~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~L~~L~l~~C~~l~~~~~~~~~~~~~~~~~L~~L~i~~~c~~l~~ 209 (326)
.....+++|+.|+++++. ++.++.. .+..+++|++|+++++ .++.+.+. ....++ +|++|++ .++. ++.
T Consensus 79 -~~~~~l~~L~~L~l~~n~-l~~~~~~--~~~~l~~L~~L~l~~n-~l~~~~~~-~~~~l~---~L~~L~L-s~n~-l~~ 147 (270)
T 2o6q_A 79 -GIFKELKNLETLWVTDNK-LQALPIG--VFDQLVNLAELRLDRN-QLKSLPPR-VFDSLT---KLTYLSL-GYNE-LQS 147 (270)
T ss_dssp -TTTSSCTTCCEEECCSSC-CCCCCTT--TTTTCSSCCEEECCSS-CCCCCCTT-TTTTCT---TCCEEEC-CSSC-CCC
T ss_pred -hhhcCCCCCCEEECCCCc-CCcCCHh--HcccccCCCEEECCCC-ccCeeCHH-HhCcCc---CCCEEEC-CCCc-CCc
Confidence 111234688888888754 5554431 3466788899988875 45555332 223445 8899998 7764 433
Q ss_pred eccccccccCccccceeeecccceeecccCCCcceecCCCccccCCcccEEEeccCCccccccCC-CCCCCCccEEEecc
Q 020456 210 VQPLFDEKVGEEVKGCIVFERMNYLTLDCLPSLTSFCLGNYALEFPSLEQVVVRQCPKMKIFSQG-VLDTPMLNKVNVTE 288 (326)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~-~~~~~~L~~L~l~~ 288 (326)
+.... ...+++|++|++.++ .++.++..... .+++|++|+++++ .++.+|.. +..+++|++|++++
T Consensus 148 ~~~~~----------~~~l~~L~~L~L~~n-~l~~~~~~~~~-~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~ 214 (270)
T 2o6q_A 148 LPKGV----------FDKLTSLKELRLYNN-QLKRVPEGAFD-KLTELKTLKLDNN-QLKRVPEGAFDSLEKLKMLQLQE 214 (270)
T ss_dssp CCTTT----------TTTCTTCCEEECCSS-CCSCCCTTTTT-TCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCS
T ss_pred cCHhH----------ccCCcccceeEecCC-cCcEeChhHhc-cCCCcCEEECCCC-cCCcCCHHHhccccCCCEEEecC
Confidence 32210 234578888988885 45556554332 6789999999876 56666663 55688999999988
Q ss_pred cc
Q 020456 289 EE 290 (326)
Q Consensus 289 c~ 290 (326)
++
T Consensus 215 N~ 216 (270)
T 2o6q_A 215 NP 216 (270)
T ss_dssp SC
T ss_pred CC
Confidence 75
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.19 E-value=3.5e-10 Score=100.72 Aligned_cols=205 Identities=18% Similarity=0.177 Sum_probs=128.8
Q ss_pred cCCCccEEEcccCCCcccccccCCCCCCCCCCccEEEEecCCCCCcCCchhHHhhC-----CCCCEEEEccCcCcceecc
Q 020456 47 GFCDIEYLQLSDFPCLKEIWHGQALPVSFFNNLEELEVDDCTNMSSAIPANLLRCL-----NNLRCLEVRNCDSIEEVLH 121 (326)
Q Consensus 47 ~~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l-----~~L~~L~l~~c~~l~~l~~ 121 (326)
.+++|++|+++++.-...++... + ...+++|++|+++++. ++.. +. .+..+ ++|++|+++++. +..+++
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~-~-~~~l~~L~~L~Ls~N~-l~~~-~~-~~~~l~~~~~~~L~~L~L~~N~-l~~~~~ 166 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPL-L-EATGPDLNILNLRNVS-WATR-DA-WLAELQQWLKPGLKVLSIAQAH-SLNFSC 166 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCS-S-SCCSCCCSEEEEESCB-CSSS-SS-HHHHHHTTCCTTCCEEEEESCS-CCCCCT
T ss_pred CcCCccEEEccCCcccchhHHHH-H-HhcCCCccEEEccCCC-Ccch-hH-HHHHHHHhhcCCCcEEEeeCCC-CccchH
Confidence 37889999998766433333221 1 1567899999999874 5565 33 25555 889999998875 332211
Q ss_pred ccccccccCcCCCCCCCccEEecCCCcccccc--ccccccccccccccEEeEecCCCCCccC--cchhhhccCCCCCCce
Q 020456 122 LEELNADKEHISPLFPKLSELRLIDLPKLKRF--CNFTENIIEMLMLWSLTIENCPNMETFV--SNSVVHVTTDNKKPQK 197 (326)
Q Consensus 122 ~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~--~~~~~~~~~~~~L~~L~l~~C~~l~~~~--~~~~~~~~~~~~~L~~ 197 (326)
. ....+++|+.|+++++.-...+ +... .+..+++|++|+++++ .++.+. +..+...++ +|++
T Consensus 167 ~---------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~l~---~L~~ 232 (312)
T 1wwl_A 167 E---------QVRVFPALSTLDLSDNPELGERGLISAL-CPLKFPTLQVLALRNA-GMETPSGVCSALAAARV---QLQG 232 (312)
T ss_dssp T---------TCCCCSSCCEEECCSCTTCHHHHHHHHS-CTTSCTTCCEEECTTS-CCCCHHHHHHHHHHTTC---CCSE
T ss_pred H---------HhccCCCCCEEECCCCCcCcchHHHHHH-HhccCCCCCEEECCCC-cCcchHHHHHHHHhcCC---CCCE
Confidence 0 1113568999999887643321 1100 1256789999999887 455331 123333445 8999
Q ss_pred EEecccCcccceeccccccccCccccceeeecccceeecccCCCcceecCCCccccCCcccEEEeccCCccccccCCCCC
Q 020456 198 LTLEENFLLADQVQPLFDEKVGEEVKGCIVFERMNYLTLDCLPSLTSFCLGNYALEFPSLEQVVVRQCPKMKIFSQGVLD 277 (326)
Q Consensus 198 L~i~~~c~~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~ 277 (326)
|++ .++. ++...+. .....+++|++|++.++. ++.++... . ++|++|+++++ .++.+|. +..
T Consensus 233 L~L-s~N~-l~~~~~~---------~~~~~l~~L~~L~Ls~N~-l~~ip~~~---~-~~L~~L~Ls~N-~l~~~p~-~~~ 294 (312)
T 1wwl_A 233 LDL-SHNS-LRDAAGA---------PSCDWPSQLNSLNLSFTG-LKQVPKGL---P-AKLSVLDLSYN-RLDRNPS-PDE 294 (312)
T ss_dssp EEC-TTSC-CCSSCCC---------SCCCCCTTCCEEECTTSC-CSSCCSSC---C-SEEEEEECCSS-CCCSCCC-TTT
T ss_pred EEC-CCCc-CCcccch---------hhhhhcCCCCEEECCCCc-cChhhhhc---c-CCceEEECCCC-CCCCChh-Hhh
Confidence 998 7765 3322111 002235789999999864 56666533 2 78999999775 5666766 667
Q ss_pred CCCccEEEeccc
Q 020456 278 TPMLNKVNVTEE 289 (326)
Q Consensus 278 ~~~L~~L~l~~c 289 (326)
+++|++|+++++
T Consensus 295 l~~L~~L~L~~N 306 (312)
T 1wwl_A 295 LPQVGNLSLKGN 306 (312)
T ss_dssp SCEEEEEECTTC
T ss_pred CCCCCEEeccCC
Confidence 899999999876
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=1.3e-09 Score=107.26 Aligned_cols=62 Identities=10% Similarity=0.078 Sum_probs=41.5
Q ss_pred eeecccceeecccCCCcceecCCCccccCCcccEEEeccCCccccccC---------CCCCCCCccEEEecccc
Q 020456 226 IVFERMNYLTLDCLPSLTSFCLGNYALEFPSLEQVVVRQCPKMKIFSQ---------GVLDTPMLNKVNVTEEE 290 (326)
Q Consensus 226 ~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~---------~~~~~~~L~~L~l~~c~ 290 (326)
..+++|+.|++.++ .++.++..... .+++|++|+++++. ++.++. .+..+++|++|+++++.
T Consensus 477 ~~l~~L~~L~Ls~N-~l~~i~~~~~~-~l~~L~~L~Ls~N~-l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~ 547 (680)
T 1ziw_A 477 QPLRNLTILDLSNN-NIANINDDMLE-GLEKLEILDLQHNN-LARLWKHANPGGPIYFLKGLSHLHILNLESNG 547 (680)
T ss_dssp TTCTTCCEEECCSS-CCCCCCTTTTT-TCTTCCEEECCSSC-CGGGGSTTSTTSCCCTTTTCTTCCEEECCSSC
T ss_pred ccCCCCCEEECCCC-CCCcCChhhhc-cccccCEEeCCCCC-ccccchhhccCCcchhhcCCCCCCEEECCCCC
Confidence 34678888888875 45555544332 67889999987764 433321 14567899999998873
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=99.17 E-value=1.9e-10 Score=100.35 Aligned_cols=35 Identities=23% Similarity=0.341 Sum_probs=16.6
Q ss_pred CCCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccC
Q 020456 75 FFNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNC 113 (326)
Q Consensus 75 ~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c 113 (326)
.+++|++|+++++. ++.+ +. +..+++|++|++++|
T Consensus 61 ~l~~L~~L~l~~n~-l~~~-~~--l~~l~~L~~L~L~~n 95 (272)
T 3rfs_A 61 YLPNVRYLALGGNK-LHDI-SA--LKELTNLTYLILTGN 95 (272)
T ss_dssp GCTTCCEEECTTSC-CCCC-GG--GTTCTTCCEEECTTS
T ss_pred cCCCCcEEECCCCC-CCCc-hh--hcCCCCCCEEECCCC
Confidence 34555555555543 3332 11 444555555555554
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=99.17 E-value=4.5e-10 Score=97.99 Aligned_cols=178 Identities=15% Similarity=0.167 Sum_probs=126.2
Q ss_pred CCCCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccCcCcceeccccccccccCcCCCCCCCccEEecCCCcccccc
Q 020456 74 SFFNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNCDSIEEVLHLEELNADKEHISPLFPKLSELRLIDLPKLKRF 153 (326)
Q Consensus 74 ~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~ 153 (326)
..+++|++|.+.++. ++... . ++.+++|++|+++++. +..+. . ...+++|+.|+++++ .++.+
T Consensus 38 ~~l~~L~~L~l~~~~-i~~~~-~--l~~l~~L~~L~l~~n~-l~~~~---~--------l~~l~~L~~L~L~~n-~l~~~ 100 (272)
T 3rfs_A 38 NELNSIDQIIANNSD-IKSVQ-G--IQYLPNVRYLALGGNK-LHDIS---A--------LKELTNLTYLILTGN-QLQSL 100 (272)
T ss_dssp HHHTTCCEEECTTSC-CCCCT-T--GGGCTTCCEEECTTSC-CCCCG---G--------GTTCTTCCEEECTTS-CCCCC
T ss_pred ccccceeeeeeCCCC-ccccc-c--cccCCCCcEEECCCCC-CCCch---h--------hcCCCCCCEEECCCC-ccCcc
Confidence 457899999999985 55443 2 6789999999999875 33321 1 124579999999987 45555
Q ss_pred ccccccccccccccEEeEecCCCCCccCcchhhhccCCCCCCceEEecccCcccceeccccccccCccccceeeecccce
Q 020456 154 CNFTENIIEMLMLWSLTIENCPNMETFVSNSVVHVTTDNKKPQKLTLEENFLLADQVQPLFDEKVGEEVKGCIVFERMNY 233 (326)
Q Consensus 154 ~~~~~~~~~~~~L~~L~l~~C~~l~~~~~~~~~~~~~~~~~L~~L~i~~~c~~l~~~~~~~~~~~~~~~~~~~~l~~L~~ 233 (326)
+.. .+..+++|++|++++| .++.+.+ .....++ +|++|++ .+|. ++.+.+.. ...+++|++
T Consensus 101 ~~~--~~~~l~~L~~L~L~~n-~l~~~~~-~~~~~l~---~L~~L~L-~~n~-l~~~~~~~----------~~~l~~L~~ 161 (272)
T 3rfs_A 101 PNG--VFDKLTNLKELVLVEN-QLQSLPD-GVFDKLT---NLTYLNL-AHNQ-LQSLPKGV----------FDKLTNLTE 161 (272)
T ss_dssp CTT--TTTTCTTCCEEECTTS-CCCCCCT-TTTTTCT---TCCEEEC-CSSC-CCCCCTTT----------TTTCTTCCE
T ss_pred Chh--HhcCCcCCCEEECCCC-cCCccCH-HHhccCC---CCCEEEC-CCCc-cCccCHHH----------hccCccCCE
Confidence 431 3577899999999987 4666533 3333455 9999999 8874 44443221 235689999
Q ss_pred eecccCCCcceecCCCccccCCcccEEEeccCCccccccC-CCCCCCCccEEEecccc
Q 020456 234 LTLDCLPSLTSFCLGNYALEFPSLEQVVVRQCPKMKIFSQ-GVLDTPMLNKVNVTEEE 290 (326)
Q Consensus 234 L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~-~~~~~~~L~~L~l~~c~ 290 (326)
|++.++ .++.++..... .+++|++|+++++. ++.++. .+..+++|++|++++++
T Consensus 162 L~l~~n-~l~~~~~~~~~-~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~ 216 (272)
T 3rfs_A 162 LDLSYN-QLQSLPEGVFD-KLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIWLHDNP 216 (272)
T ss_dssp EECCSS-CCCCCCTTTTT-TCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSC
T ss_pred EECCCC-CcCccCHHHhc-CCccCCEEECCCCc-CCccCHHHHhCCcCCCEEEccCCC
Confidence 999997 46666654322 68999999998875 555554 45679999999999884
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.17 E-value=3.5e-10 Score=107.69 Aligned_cols=133 Identities=18% Similarity=0.154 Sum_probs=84.1
Q ss_pred CCCCccEEecCCCccccccccccccccccccccEEeEecCCCCCc-cCcchhhhccCCCCCCceEEecccCcccceeccc
Q 020456 135 LFPKLSELRLIDLPKLKRFCNFTENIIEMLMLWSLTIENCPNMET-FVSNSVVHVTTDNKKPQKLTLEENFLLADQVQPL 213 (326)
Q Consensus 135 ~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~L~~L~l~~C~~l~~-~~~~~~~~~~~~~~~L~~L~i~~~c~~l~~~~~~ 213 (326)
.+++|+.|+++++. ++.++.....+..+++|+.|+++++. +.. + +......++ +|++|++ .+|.-...++..
T Consensus 346 ~l~~L~~L~L~~N~-l~~l~~~~~~~~~l~~L~~L~Ls~N~-l~~~l-~~~~~~~l~---~L~~L~L-s~N~l~~~~~~~ 418 (520)
T 2z7x_B 346 HLTELETLILQMNQ-LKELSKIAEMTTQMKSLQQLDISQNS-VSYDE-KKGDCSWTK---SLLSLNM-SSNILTDTIFRC 418 (520)
T ss_dssp CCSSCCEEECCSSC-CCBHHHHHHHHTTCTTCCEEECCSSC-CBCCG-GGCSCCCCT---TCCEEEC-CSSCCCGGGGGS
T ss_pred cCCCCCEEEccCCc-cCccccchHHHhhCCCCCEEECCCCc-CCccc-ccchhccCc---cCCEEEC-cCCCCCcchhhh
Confidence 34677777777654 33222111135567778888887763 333 3 222222334 7888887 766533222111
Q ss_pred cccccCccccceeeecccceeecccCCCcceecCCCccccCCcccEEEeccCCccccccCC-CCCCCCccEEEeccccC
Q 020456 214 FDEKVGEEVKGCIVFERMNYLTLDCLPSLTSFCLGNYALEFPSLEQVVVRQCPKMKIFSQG-VLDTPMLNKVNVTEEEK 291 (326)
Q Consensus 214 ~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~-~~~~~~L~~L~l~~c~~ 291 (326)
. .++|+.|++.++ .++.++.... .+++|++|+++++ .++.+|.. +..+++|++|++++++-
T Consensus 419 -----------l--~~~L~~L~Ls~N-~l~~ip~~~~--~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~l~~N~~ 480 (520)
T 2z7x_B 419 -----------L--PPRIKVLDLHSN-KIKSIPKQVV--KLEALQELNVASN-QLKSVPDGIFDRLTSLQKIWLHTNPW 480 (520)
T ss_dssp -----------C--CTTCCEEECCSS-CCCCCCGGGG--GCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred -----------h--cccCCEEECCCC-cccccchhhh--cCCCCCEEECCCC-cCCccCHHHhccCCcccEEECcCCCC
Confidence 1 168999999986 5667766444 7899999999887 56678875 66789999999988743
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=99.17 E-value=1.2e-11 Score=119.51 Aligned_cols=217 Identities=15% Similarity=0.181 Sum_probs=135.9
Q ss_pred cCCCccEEEcccCCCcccccc------cCC-----CCCCCCCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccCcC
Q 020456 47 GFCDIEYLQLSDFPCLKEIWH------GQA-----LPVSFFNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNCDS 115 (326)
Q Consensus 47 ~~~~L~~L~l~~~~~l~~~~~------~~~-----l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~ 115 (326)
.+++|++|.+.+++.+..+.. ... .....+++|++|++++|. +++..+..+.+.+++|++|++.+|..
T Consensus 64 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~-~~~~~~~~l~~~~~~L~~L~L~~~~~ 142 (594)
T 2p1m_B 64 RFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMV-VTDDCLELIAKSFKNFKVLVLSSCEG 142 (594)
T ss_dssp HCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCB-CCHHHHHHHHHHCTTCCEEEEESCEE
T ss_pred hCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcE-EcHHHHHHHHHhCCCCcEEeCCCcCC
Confidence 489999999999886653211 000 001357899999999995 65555555455799999999999975
Q ss_pred cceeccccccccccCcCCCCCCCccEEecCCCcccccccc--ccccccccccccEEeEecCC-CCCccCcchhhhccCCC
Q 020456 116 IEEVLHLEELNADKEHISPLFPKLSELRLIDLPKLKRFCN--FTENIIEMLMLWSLTIENCP-NMETFVSNSVVHVTTDN 192 (326)
Q Consensus 116 l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~--~~~~~~~~~~L~~L~l~~C~-~l~~~~~~~~~~~~~~~ 192 (326)
+... +... +...+++|++|++++|. +..... .......+++|++|++++|. .+.......+...++
T Consensus 143 ~~~~----~l~~----~~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~-- 211 (594)
T 2p1m_B 143 FSTD----GLAA----IAATCRNLKELDLRESD-VDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCP-- 211 (594)
T ss_dssp EEHH----HHHH----HHHHCTTCCEEECTTCE-EECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCT--
T ss_pred CCHH----HHHH----HHHhCCCCCEEeCcCCc-cCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCC--
Confidence 5421 0000 11135799999999987 332110 00022367899999999986 222211223333456
Q ss_pred CCCceEEecccCcccceeccccccccCccccceeeecccceee-------------------cccCCCcceec-CCC---
Q 020456 193 KKPQKLTLEENFLLADQVQPLFDEKVGEEVKGCIVFERMNYLT-------------------LDCLPSLTSFC-LGN--- 249 (326)
Q Consensus 193 ~~L~~L~i~~~c~~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~-------------------l~~c~~l~~~~-~~~--- 249 (326)
+|++|++ .+|..++.+... ...+++|++|. +.+|++++.+. ...
T Consensus 212 -~L~~L~L-~~~~~~~~l~~~-----------~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~ 278 (594)
T 2p1m_B 212 -NLKSLKL-NRAVPLEKLATL-----------LQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVP 278 (594)
T ss_dssp -TCCEEEC-CTTSCHHHHHHH-----------HHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCG
T ss_pred -CCcEEec-CCCCcHHHHHHH-----------HhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccch
Confidence 9999999 998655543221 23456677775 34556555541 100
Q ss_pred --c---cccCCcccEEEeccCCcccc--ccCCCCCCCCccEEEeccc
Q 020456 250 --Y---ALEFPSLEQVVVRQCPKMKI--FSQGVLDTPMLNKVNVTEE 289 (326)
Q Consensus 250 --~---~~~~~~L~~L~i~~c~~l~~--l~~~~~~~~~L~~L~l~~c 289 (326)
. ...+++|++|++++|. +.. +...+..+++|++|++.+|
T Consensus 279 ~~l~~~~~~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~ 324 (594)
T 2p1m_B 279 AYLPAVYSVCSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDY 324 (594)
T ss_dssp GGGGGGHHHHTTCCEEECTTCC-CCHHHHHHHHTTCTTCCEEEEEGG
T ss_pred hhHHHHHHhhCCCCEEEccCCC-CCHHHHHHHHhcCCCcCEEeCcCc
Confidence 0 1147899999999988 553 2223446899999999988
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=99.17 E-value=1.1e-11 Score=119.74 Aligned_cols=138 Identities=10% Similarity=0.037 Sum_probs=81.5
Q ss_pred CCCccEEecCC---Ccccccccccc---ccccccccccEEeEecCCC-CCccCcchhhhccCCCCCCceEEecccCcccc
Q 020456 136 FPKLSELRLID---LPKLKRFCNFT---ENIIEMLMLWSLTIENCPN-METFVSNSVVHVTTDNKKPQKLTLEENFLLAD 208 (326)
Q Consensus 136 ~~~L~~L~l~~---c~~L~~~~~~~---~~~~~~~~L~~L~l~~C~~-l~~~~~~~~~~~~~~~~~L~~L~i~~~c~~l~ 208 (326)
+++|+.|++.+ |..++..+... ..+..+++|++|++++|.+ +.+.....+...++ +|++|++ .+|.--.
T Consensus 402 ~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~---~L~~L~L-~~n~l~~ 477 (592)
T 3ogk_B 402 LKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSP---NVRWMLL-GYVGESD 477 (592)
T ss_dssp CCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCT---TCCEEEE-CSCCSSH
T ss_pred CCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCc---cceEeec-cCCCCCH
Confidence 45788888763 45555432100 0244578888888887764 34433334444555 8899998 7776221
Q ss_pred eeccccccccCccccceeeecccceeecccCCCcceecCCCccccCCcccEEEeccCCcccccc--CCCCCCCCccEEEe
Q 020456 209 QVQPLFDEKVGEEVKGCIVFERMNYLTLDCLPSLTSFCLGNYALEFPSLEQVVVRQCPKMKIFS--QGVLDTPMLNKVNV 286 (326)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~--~~~~~~~~L~~L~l 286 (326)
.... .....+++|++|++.+|+ ++..........+++|++|++++|. ++... .-...+|.++...+
T Consensus 478 ~~~~----------~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~-it~~~~~~l~~~~p~l~~~~~ 545 (592)
T 3ogk_B 478 EGLM----------EFSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR-ASMTGQDLMQMARPYWNIELI 545 (592)
T ss_dssp HHHH----------HHHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB-CCTTCTTGGGGCCTTEEEEEE
T ss_pred HHHH----------HHHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc-CCHHHHHHHHHhCCCcEEEEe
Confidence 1110 012356899999999998 5432111111268999999999998 54321 12225677776666
Q ss_pred ccc
Q 020456 287 TEE 289 (326)
Q Consensus 287 ~~c 289 (326)
...
T Consensus 546 ~~~ 548 (592)
T 3ogk_B 546 PSR 548 (592)
T ss_dssp CCC
T ss_pred cCc
Confidence 543
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=99.17 E-value=4.2e-10 Score=100.09 Aligned_cols=191 Identities=13% Similarity=0.146 Sum_probs=132.1
Q ss_pred cCCCCeeEEEecccCCcccceecCCCchhhhhhhhccccCCCccEEEcccCCCcccccccCCCCCCCCCCccEEEEecCC
Q 020456 9 VSTPKLHEVQVTEKNEDELRHWEGNLNSTIQKCYEEMIGFCDIEYLQLSDFPCLKEIWHGQALPVSFFNNLEELEVDDCT 88 (326)
Q Consensus 9 ~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~L~~L~l~~c~ 88 (326)
..+++|++|.+.+.+... +. .+..+++|++|+++++. +..+.. . ..+++|++|++++|.
T Consensus 38 ~~l~~L~~L~l~~~~i~~---l~------------~~~~l~~L~~L~L~~n~-i~~~~~-~----~~l~~L~~L~L~~n~ 96 (308)
T 1h6u_A 38 ADLDGITTLSAFGTGVTT---IE------------GVQYLNNLIGLELKDNQ-ITDLAP-L----KNLTKITELELSGNP 96 (308)
T ss_dssp HHHHTCCEEECTTSCCCC---CT------------TGGGCTTCCEEECCSSC-CCCCGG-G----TTCCSCCEEECCSCC
T ss_pred HHcCCcCEEEeeCCCccC---ch------------hhhccCCCCEEEccCCc-CCCChh-H----ccCCCCCEEEccCCc
Confidence 357889999998443322 21 13358999999999774 444332 2 678999999999985
Q ss_pred CCCcCCchhHHhhCCCCCEEEEccCcCcceeccccccccccCcCCCCCCCccEEecCCCccccccccccccccccccccE
Q 020456 89 NMSSAIPANLLRCLNNLRCLEVRNCDSIEEVLHLEELNADKEHISPLFPKLSELRLIDLPKLKRFCNFTENIIEMLMLWS 168 (326)
Q Consensus 89 ~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~L~~ 168 (326)
++.+ +. +..+++|++|++++|. +..+.. ...+++|+.|+++++. ++.++ .+..+++|+.
T Consensus 97 -l~~~-~~--~~~l~~L~~L~l~~n~-l~~~~~-----------l~~l~~L~~L~l~~n~-l~~~~----~l~~l~~L~~ 155 (308)
T 1h6u_A 97 -LKNV-SA--IAGLQSIKTLDLTSTQ-ITDVTP-----------LAGLSNLQVLYLDLNQ-ITNIS----PLAGLTNLQY 155 (308)
T ss_dssp -CSCC-GG--GTTCTTCCEEECTTSC-CCCCGG-----------GTTCTTCCEEECCSSC-CCCCG----GGGGCTTCCE
T ss_pred -CCCc-hh--hcCCCCCCEEECCCCC-CCCchh-----------hcCCCCCCEEECCCCc-cCcCc----cccCCCCccE
Confidence 6554 32 7789999999999975 443321 1245799999999874 55544 2567899999
Q ss_pred EeEecCCCCCccCcchhhhccCCCCCCceEEecccCcccceeccccccccCccccceeeecccceeecccCCCcceecCC
Q 020456 169 LTIENCPNMETFVSNSVVHVTTDNKKPQKLTLEENFLLADQVQPLFDEKVGEEVKGCIVFERMNYLTLDCLPSLTSFCLG 248 (326)
Q Consensus 169 L~l~~C~~l~~~~~~~~~~~~~~~~~L~~L~i~~~c~~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~ 248 (326)
|++++| .+..+.+ ...++ +|+.|++ .++. ++.+.+ ...+++|++|++.++. ++.++.
T Consensus 156 L~l~~n-~l~~~~~---l~~l~---~L~~L~l-~~n~-l~~~~~------------l~~l~~L~~L~L~~N~-l~~~~~- 212 (308)
T 1h6u_A 156 LSIGNA-QVSDLTP---LANLS---KLTTLKA-DDNK-ISDISP------------LASLPNLIEVHLKNNQ-ISDVSP- 212 (308)
T ss_dssp EECCSS-CCCCCGG---GTTCT---TCCEEEC-CSSC-CCCCGG------------GGGCTTCCEEECTTSC-CCBCGG-
T ss_pred EEccCC-cCCCChh---hcCCC---CCCEEEC-CCCc-cCcChh------------hcCCCCCCEEEccCCc-cCcccc-
Confidence 999987 5666533 33455 8999999 7765 333321 2356889999999864 455543
Q ss_pred CccccCCcccEEEeccCC
Q 020456 249 NYALEFPSLEQVVVRQCP 266 (326)
Q Consensus 249 ~~~~~~~~L~~L~i~~c~ 266 (326)
. ..+++|++|++++++
T Consensus 213 l--~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 213 L--ANTSNLFIVTLTNQT 228 (308)
T ss_dssp G--TTCTTCCEEEEEEEE
T ss_pred c--cCCCCCCEEEccCCe
Confidence 1 278899999998765
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.17 E-value=5e-11 Score=107.99 Aligned_cols=207 Identities=13% Similarity=0.058 Sum_probs=137.5
Q ss_pred CCCccEEEcccCCCcccccccCCCCCCCCCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccCcCcceecccccccc
Q 020456 48 FCDIEYLQLSDFPCLKEIWHGQALPVSFFNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNCDSIEEVLHLEELNA 127 (326)
Q Consensus 48 ~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~ 127 (326)
.++|++|+++++. +..++... ...+++|++|+++++ +++.+.+.. +..+++|++|+++++. +..++..
T Consensus 51 ~~~L~~L~l~~n~-i~~~~~~~---~~~l~~L~~L~L~~n-~l~~~~~~~-~~~l~~L~~L~Ls~n~-l~~~~~~----- 118 (353)
T 2z80_A 51 TEAVKSLDLSNNR-ITYISNSD---LQRCVNLQALVLTSN-GINTIEEDS-FSSLGSLEHLDLSYNY-LSNLSSS----- 118 (353)
T ss_dssp CTTCCEEECTTSC-CCEECTTT---TTTCTTCCEEECTTS-CCCEECTTT-TTTCTTCCEEECCSSC-CSSCCHH-----
T ss_pred cccCcEEECCCCc-CcccCHHH---hccCCCCCEEECCCC-ccCccCHhh-cCCCCCCCEEECCCCc-CCcCCHh-----
Confidence 4689999999765 45544422 256899999999998 466665543 6789999999999864 3333211
Q ss_pred ccCcCCCCCCCccEEecCCCccccccccccccccccccccEEeEecCCCCCccCcchhhhccCCCCCCceEEecccCccc
Q 020456 128 DKEHISPLFPKLSELRLIDLPKLKRFCNFTENIIEMLMLWSLTIENCPNMETFVSNSVVHVTTDNKKPQKLTLEENFLLA 207 (326)
Q Consensus 128 ~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~L~~L~l~~C~~l~~~~~~~~~~~~~~~~~L~~L~i~~~c~~l 207 (326)
....+++|+.|+++++ .++.++... .+..+++|++|++++|..+..+.+..+. .++ +|++|++ .++. +
T Consensus 119 ----~~~~l~~L~~L~L~~n-~l~~l~~~~-~~~~l~~L~~L~l~~n~~~~~~~~~~~~-~l~---~L~~L~l-~~n~-l 186 (353)
T 2z80_A 119 ----WFKPLSSLTFLNLLGN-PYKTLGETS-LFSHLTKLQILRVGNMDTFTKIQRKDFA-GLT---FLEELEI-DASD-L 186 (353)
T ss_dssp ----HHTTCTTCSEEECTTC-CCSSSCSSC-SCTTCTTCCEEEEEESSSCCEECTTTTT-TCC---EEEEEEE-EETT-C
T ss_pred ----HhCCCccCCEEECCCC-CCcccCchh-hhccCCCCcEEECCCCccccccCHHHcc-CCC---CCCEEEC-CCCC-c
Confidence 0113579999999986 455555311 4667899999999998777776444333 445 8999999 8776 3
Q ss_pred ceeccccccccCccccceeeecccceeecccCCCcceecCCCccccCCcccEEEeccCCccc------------------
Q 020456 208 DQVQPLFDEKVGEEVKGCIVFERMNYLTLDCLPSLTSFCLGNYALEFPSLEQVVVRQCPKMK------------------ 269 (326)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~------------------ 269 (326)
..+.+.. ...+++|++|++.++. ++.++.... ..+++|++|+++++.--.
T Consensus 187 ~~~~~~~----------l~~l~~L~~L~l~~n~-l~~~~~~~~-~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l 254 (353)
T 2z80_A 187 QSYEPKS----------LKSIQNVSHLILHMKQ-HILLLEIFV-DVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKF 254 (353)
T ss_dssp CEECTTT----------TTTCSEEEEEEEECSC-STTHHHHHH-HHTTTEEEEEEESCBCTTCCCC------CCCCCCEE
T ss_pred CccCHHH----------HhccccCCeecCCCCc-cccchhhhh-hhcccccEEECCCCccccccccccccccccchhhcc
Confidence 3332221 3356889999998865 444443221 147788888887764211
Q ss_pred -------------cccCCCCCCCCccEEEecccc
Q 020456 270 -------------IFSQGVLDTPMLNKVNVTEEE 290 (326)
Q Consensus 270 -------------~l~~~~~~~~~L~~L~l~~c~ 290 (326)
.+|..+..+++|++|++++|.
T Consensus 255 ~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~ 288 (353)
T 2z80_A 255 TFRNVKITDESLFQVMKLLNQISGLLELEFSRNQ 288 (353)
T ss_dssp EEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSC
T ss_pred ccccccccCcchhhhHHHHhcccCCCEEECCCCC
Confidence 122333467899999999883
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=1.1e-09 Score=95.43 Aligned_cols=202 Identities=17% Similarity=0.215 Sum_probs=132.2
Q ss_pred CCeeEEEecccCCcccceecCCCchhhhhhhhccccCCCccEEEcccCCCcccccccCCCCCCCCCCccEEEEecCCCCC
Q 020456 12 PKLHEVQVTEKNEDELRHWEGNLNSTIQKCYEEMIGFCDIEYLQLSDFPCLKEIWHGQALPVSFFNNLEELEVDDCTNMS 91 (326)
Q Consensus 12 ~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~L~~L~l~~c~~l~ 91 (326)
++|++|++.+.. +..+... .+..+++|++|+++++. +..+.... ...+++|++|+++++. ++
T Consensus 28 ~~l~~L~ls~n~---l~~~~~~----------~~~~l~~L~~L~l~~n~-l~~~~~~~---~~~l~~L~~L~L~~n~-l~ 89 (276)
T 2z62_A 28 FSTKNLDLSFNP---LRHLGSY----------SFFSFPELQVLDLSRCE-IQTIEDGA---YQSLSHLSTLILTGNP-IQ 89 (276)
T ss_dssp TTCCEEECTTCC---CCEECTT----------TTTTCTTCSEEECTTCC-CCEECTTT---TTTCTTCCEEECTTCC-CC
T ss_pred CCccEEECCCCc---ccccCHh----------HhccccCCcEEECCCCc-CCccCHHH---ccCCcCCCEEECCCCc-cC
Confidence 469999998332 2222211 13458999999999874 45444322 2568999999999985 66
Q ss_pred cCCchhHHhhCCCCCEEEEccCcCcceeccccccccccCcCCCCCCCccEEecCCCccccc--cccccccccccccccEE
Q 020456 92 SAIPANLLRCLNNLRCLEVRNCDSIEEVLHLEELNADKEHISPLFPKLSELRLIDLPKLKR--FCNFTENIIEMLMLWSL 169 (326)
Q Consensus 92 ~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~--~~~~~~~~~~~~~L~~L 169 (326)
...+.. +..+++|++|+++++. +..+... ....+++|+.|+++++. ++. ++. .+..+++|++|
T Consensus 90 ~~~~~~-~~~l~~L~~L~l~~n~-l~~~~~~---------~~~~l~~L~~L~l~~n~-l~~~~l~~---~~~~l~~L~~L 154 (276)
T 2z62_A 90 SLALGA-FSGLSSLQKLVAVETN-LASLENF---------PIGHLKTLKELNVAHNL-IQSFKLPE---YFSNLTNLEHL 154 (276)
T ss_dssp EECTTT-TTTCTTCCEEECTTSC-CCCSTTC---------CCTTCTTCCEEECCSSC-CCCCCCCG---GGGGCTTCCEE
T ss_pred ccChhh-hcCCccccEEECCCCC-ccccCch---------hcccCCCCCEEECcCCc-cceecCch---hhccCCCCCEE
Confidence 655433 6789999999999874 3322110 11245799999999864 443 343 67788999999
Q ss_pred eEecCCCCCccCcchhhhccCCCCCCc----eEEecccCcccceeccccccccCccccceeeecccceeecccCCCccee
Q 020456 170 TIENCPNMETFVSNSVVHVTTDNKKPQ----KLTLEENFLLADQVQPLFDEKVGEEVKGCIVFERMNYLTLDCLPSLTSF 245 (326)
Q Consensus 170 ~l~~C~~l~~~~~~~~~~~~~~~~~L~----~L~i~~~c~~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~ 245 (326)
+++++ .++.+.+..+. .+. +|+ +|++ .++. ++.+... .....+|++|++.++. ++.+
T Consensus 155 ~Ls~N-~l~~~~~~~~~-~l~---~L~~l~l~L~l-s~n~-l~~~~~~-----------~~~~~~L~~L~L~~n~-l~~~ 215 (276)
T 2z62_A 155 DLSSN-KIQSIYCTDLR-VLH---QMPLLNLSLDL-SLNP-MNFIQPG-----------AFKEIRLKELALDTNQ-LKSV 215 (276)
T ss_dssp ECCSS-CCCEECGGGGH-HHH---TCTTCCEEEEC-CSSC-CCEECTT-----------SSCSCCEEEEECCSSC-CSCC
T ss_pred ECCCC-CCCcCCHHHhh-hhh---hccccceeeec-CCCc-ccccCcc-----------ccCCCcccEEECCCCc-eeec
Confidence 99987 56666443333 233 565 6777 6554 4444322 1223479999999965 7777
Q ss_pred cCCCccccCCcccEEEeccCC
Q 020456 246 CLGNYALEFPSLEQVVVRQCP 266 (326)
Q Consensus 246 ~~~~~~~~~~~L~~L~i~~c~ 266 (326)
+..... .+++|++|++++.+
T Consensus 216 ~~~~~~-~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 216 PDGIFD-RLTSLQKIWLHTNP 235 (276)
T ss_dssp CTTTTT-TCCSCCEEECCSSC
T ss_pred CHhHhc-ccccccEEEccCCc
Confidence 665432 68999999998543
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=99.16 E-value=6.9e-10 Score=100.43 Aligned_cols=208 Identities=15% Similarity=0.118 Sum_probs=144.0
Q ss_pred CCCccEEEcccCCCcccccccCCCCCCCCCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccCcCcceecccccccc
Q 020456 48 FCDIEYLQLSDFPCLKEIWHGQALPVSFFNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNCDSIEEVLHLEELNA 127 (326)
Q Consensus 48 ~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~ 127 (326)
.+++++|++++. .++.++.+. ...+++|++|+++++.....+. ...+.++++|+++.+.++..+..+.+.
T Consensus 29 ~~~l~~L~Ls~N-~i~~i~~~~---f~~l~~L~~L~Ls~N~i~~~i~-~~~f~~L~~l~~~l~~~~N~l~~l~~~----- 98 (350)
T 4ay9_X 29 PRNAIELRFVLT-KLRVIQKGA---FSGFGDLEKIEISQNDVLEVIE-ADVFSNLPKLHEIRIEKANNLLYINPE----- 98 (350)
T ss_dssp CTTCSEEEEESC-CCSEECTTS---STTCTTCCEEEEECCTTCCEEC-TTSBCSCTTCCEEEEEEETTCCEECTT-----
T ss_pred CCCCCEEEccCC-cCCCcCHHH---HcCCCCCCEEECcCCCCCCccC-hhHhhcchhhhhhhcccCCcccccCch-----
Confidence 468999999864 466666543 1568899999999986544443 333567888888777777777766321
Q ss_pred ccCcCCCCCCCccEEecCCCccccccccccccccccccccEEeEecCCCCCccCcchhhhccCCCCCCceEEecccCccc
Q 020456 128 DKEHISPLFPKLSELRLIDLPKLKRFCNFTENIIEMLMLWSLTIENCPNMETFVSNSVVHVTTDNKKPQKLTLEENFLLA 207 (326)
Q Consensus 128 ~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~L~~L~l~~C~~l~~~~~~~~~~~~~~~~~L~~L~i~~~c~~l 207 (326)
....+++|+.|+++++. ++.++.. ......++..|.+.++.++..+....+..... .++.|++ .++ .+
T Consensus 99 ----~f~~l~~L~~L~l~~n~-l~~~~~~--~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~---~l~~L~L-~~N-~i 166 (350)
T 4ay9_X 99 ----AFQNLPNLQYLLISNTG-IKHLPDV--HKIHSLQKVLLDIQDNINIHTIERNSFVGLSF---ESVILWL-NKN-GI 166 (350)
T ss_dssp ----SBCCCTTCCEEEEEEEC-CSSCCCC--TTCCBSSCEEEEEESCTTCCEECTTSSTTSBS---SCEEEEC-CSS-CC
T ss_pred ----hhhhccccccccccccc-cccCCch--hhcccchhhhhhhccccccccccccchhhcch---hhhhhcc-ccc-cc
Confidence 11235689999998753 5555432 23345667888888888888875544443333 6888888 554 46
Q ss_pred ceeccccccccCccccceeeecccceeecccCCCcceecCCCccccCCcccEEEeccCCccccccCCCCCCCCccEEEec
Q 020456 208 DQVQPLFDEKVGEEVKGCIVFERMNYLTLDCLPSLTSFCLGNYALEFPSLEQVVVRQCPKMKIFSQGVLDTPMLNKVNVT 287 (326)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~~L~~L~l~ 287 (326)
+.+... .....+|++|.+.++..++.++..... .+++|++|++++. .++.+|.+. +..|++|.+.
T Consensus 167 ~~i~~~-----------~f~~~~L~~l~l~~~n~l~~i~~~~f~-~l~~L~~LdLs~N-~l~~lp~~~--~~~L~~L~~l 231 (350)
T 4ay9_X 167 QEIHNS-----------AFNGTQLDELNLSDNNNLEELPNDVFH-GASGPVILDISRT-RIHSLPSYG--LENLKKLRAR 231 (350)
T ss_dssp CEECTT-----------SSTTEEEEEEECTTCTTCCCCCTTTTT-TEECCSEEECTTS-CCCCCCSSS--CTTCCEEECT
T ss_pred cCCChh-----------hccccchhHHhhccCCcccCCCHHHhc-cCcccchhhcCCC-CcCccChhh--hccchHhhhc
Confidence 655433 222367899999999999999876543 7889999999876 688898765 6788888887
Q ss_pred cccCC
Q 020456 288 EEEKD 292 (326)
Q Consensus 288 ~c~~~ 292 (326)
++...
T Consensus 232 ~~~~l 236 (350)
T 4ay9_X 232 STYNL 236 (350)
T ss_dssp TCTTC
T ss_pred cCCCc
Confidence 77544
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.14 E-value=1.5e-09 Score=101.80 Aligned_cols=54 Identities=11% Similarity=0.118 Sum_probs=30.4
Q ss_pred ceeecccCCCcceecCCCccccCCcccEEEeccCCccccccCC--------CCCCCCccEEEeccc
Q 020456 232 NYLTLDCLPSLTSFCLGNYALEFPSLEQVVVRQCPKMKIFSQG--------VLDTPMLNKVNVTEE 289 (326)
Q Consensus 232 ~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~--------~~~~~~L~~L~l~~c 289 (326)
+.|++.+++.+..++. ..+++|++|++++|..++.+|.. +..+++|++|+++++
T Consensus 267 ~~L~l~~n~~~~~~~~----~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N 328 (457)
T 3bz5_A 267 LEIDLTHNTQLIYFQA----EGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNT 328 (457)
T ss_dssp SCCCCTTCTTCCEEEC----TTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTC
T ss_pred CEEECCCCccCCcccc----cccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCC
Confidence 3444444444444442 14577888888777766555431 234566777777665
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.12 E-value=8.5e-10 Score=106.17 Aligned_cols=58 Identities=14% Similarity=0.164 Sum_probs=38.3
Q ss_pred cccceeecccCCCcceecCCCccccCCcccEEEeccCCccccccCC-CCCCCCccEEEecccc
Q 020456 229 ERMNYLTLDCLPSLTSFCLGNYALEFPSLEQVVVRQCPKMKIFSQG-VLDTPMLNKVNVTEEE 290 (326)
Q Consensus 229 ~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~-~~~~~~L~~L~l~~c~ 290 (326)
++|++|++.++ .++.++.... .+++|++|+++++ .++.+|.. +..+++|+++++++++
T Consensus 450 ~~L~~L~L~~N-~l~~ip~~~~--~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~l~~N~ 508 (562)
T 3a79_B 450 PKVKVLDLHNN-RIMSIPKDVT--HLQALQELNVASN-QLKSVPDGVFDRLTSLQYIWLHDNP 508 (562)
T ss_dssp TTCSEEECCSS-CCCCCCTTTT--SSCCCSEEECCSS-CCCCCCTTSTTTCTTCCCEECCSCC
T ss_pred CcCCEEECCCC-cCcccChhhc--CCCCCCEEECCCC-CCCCCCHHHHhcCCCCCEEEecCCC
Confidence 46777777765 5666665444 6677777777664 45566665 5567777777777763
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.12 E-value=2.8e-09 Score=92.75 Aligned_cols=181 Identities=19% Similarity=0.180 Sum_probs=122.1
Q ss_pred CCCccEEEcccCCCcccccccCCCCCCCCCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccCcCcceecccccccc
Q 020456 48 FCDIEYLQLSDFPCLKEIWHGQALPVSFFNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNCDSIEEVLHLEELNA 127 (326)
Q Consensus 48 ~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~ 127 (326)
.++|++|++.++. +..+.... ...+++|++|+++++. ++.+++. .+..+++|++|+++++. +..++.
T Consensus 36 ~~~l~~L~l~~n~-l~~~~~~~---~~~l~~L~~L~l~~n~-l~~i~~~-~~~~l~~L~~L~l~~n~-l~~~~~------ 102 (270)
T 2o6q_A 36 PADTKKLDLQSNK-LSSLPSKA---FHRLTKLRLLYLNDNK-LQTLPAG-IFKELKNLETLWVTDNK-LQALPI------ 102 (270)
T ss_dssp CTTCSEEECCSSC-CSCCCTTS---SSSCTTCCEEECCSSC-CSCCCTT-TTSSCTTCCEEECCSSC-CCCCCT------
T ss_pred CCCCCEEECcCCC-CCeeCHHH---hcCCCCCCEEECCCCc-cCeeChh-hhcCCCCCCEEECCCCc-CCcCCH------
Confidence 4679999998765 44443322 2568999999999984 6555543 35779999999999864 333321
Q ss_pred ccCcCCCCCCCccEEecCCCccccccccccccccccccccEEeEecCCCCCccCcchhhhccCCCCCCceEEecccCccc
Q 020456 128 DKEHISPLFPKLSELRLIDLPKLKRFCNFTENIIEMLMLWSLTIENCPNMETFVSNSVVHVTTDNKKPQKLTLEENFLLA 207 (326)
Q Consensus 128 ~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~L~~L~l~~C~~l~~~~~~~~~~~~~~~~~L~~L~i~~~c~~l 207 (326)
.....+++|+.|+++++. ++.++.. .+..+++|++|+++++ .++.+++ .....++ +|++|++ .++. +
T Consensus 103 ---~~~~~l~~L~~L~l~~n~-l~~~~~~--~~~~l~~L~~L~Ls~n-~l~~~~~-~~~~~l~---~L~~L~L-~~n~-l 169 (270)
T 2o6q_A 103 ---GVFDQLVNLAELRLDRNQ-LKSLPPR--VFDSLTKLTYLSLGYN-ELQSLPK-GVFDKLT---SLKELRL-YNNQ-L 169 (270)
T ss_dssp ---TTTTTCSSCCEEECCSSC-CCCCCTT--TTTTCTTCCEEECCSS-CCCCCCT-TTTTTCT---TCCEEEC-CSSC-C
T ss_pred ---hHcccccCCCEEECCCCc-cCeeCHH--HhCcCcCCCEEECCCC-cCCccCH-hHccCCc---ccceeEe-cCCc-C
Confidence 111245799999998854 5554431 3567899999999987 5666633 3333455 8999999 7774 4
Q ss_pred ceeccccccccCccccceeeecccceeecccCCCcceecCCCccccCCcccEEEeccCC
Q 020456 208 DQVQPLFDEKVGEEVKGCIVFERMNYLTLDCLPSLTSFCLGNYALEFPSLEQVVVRQCP 266 (326)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~ 266 (326)
+.+.+.. ...+++|++|++.++ .++.++..... .+++|+.|.+.+.+
T Consensus 170 ~~~~~~~----------~~~l~~L~~L~L~~N-~l~~~~~~~~~-~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 170 KRVPEGA----------FDKLTELKTLKLDNN-QLKRVPEGAFD-SLEKLKMLQLQENP 216 (270)
T ss_dssp SCCCTTT----------TTTCTTCCEEECCSS-CCSCCCTTTTT-TCTTCCEEECCSSC
T ss_pred cEeChhH----------hccCCCcCEEECCCC-cCCcCCHHHhc-cccCCCEEEecCCC
Confidence 4332221 234688999999986 56777664432 68899999998755
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.10 E-value=1.7e-09 Score=102.94 Aligned_cols=132 Identities=11% Similarity=0.120 Sum_probs=83.7
Q ss_pred CCCCccEEecCCCccccccccccccccccccccEEeEecCCCCCccCc-chhhhccCCCCCCceEEecccCcccceeccc
Q 020456 135 LFPKLSELRLIDLPKLKRFCNFTENIIEMLMLWSLTIENCPNMETFVS-NSVVHVTTDNKKPQKLTLEENFLLADQVQPL 213 (326)
Q Consensus 135 ~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~L~~L~l~~C~~l~~~~~-~~~~~~~~~~~~L~~L~i~~~c~~l~~~~~~ 213 (326)
.+++|+.|+++++.--..++. .+..+++|+.|++++| .++.+.. ......++ +|++|++ .++.-...+...
T Consensus 322 ~l~~L~~L~Ls~n~l~~~~~~---~~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~l~---~L~~L~L-s~N~l~~~l~~~ 393 (520)
T 2z7x_B 322 KISPFLHLDFSNNLLTDTVFE---NCGHLTELETLILQMN-QLKELSKIAEMTTQMK---SLQQLDI-SQNSVSYDEKKG 393 (520)
T ss_dssp SCCCCCEEECCSSCCCTTTTT---TCCCCSSCCEEECCSS-CCCBHHHHHHHHTTCT---TCCEEEC-CSSCCBCCGGGC
T ss_pred hCCcccEEEeECCccChhhhh---hhccCCCCCEEEccCC-ccCccccchHHHhhCC---CCCEEEC-CCCcCCcccccc
Confidence 456777777776643322333 4566778888888776 3443211 11222344 7888888 766533223211
Q ss_pred cccccCccccceeeecccceeecccCCCcceecCCCccccC-CcccEEEeccCCccccccCCCCCCCCccEEEecccc
Q 020456 214 FDEKVGEEVKGCIVFERMNYLTLDCLPSLTSFCLGNYALEF-PSLEQVVVRQCPKMKIFSQGVLDTPMLNKVNVTEEE 290 (326)
Q Consensus 214 ~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~-~~L~~L~i~~c~~l~~l~~~~~~~~~L~~L~l~~c~ 290 (326)
....+++|++|++.++.--..++. .+ ++|++|+++++ .++.+|..+..+++|++|++++|.
T Consensus 394 ----------~~~~l~~L~~L~Ls~N~l~~~~~~-----~l~~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~L~~N~ 455 (520)
T 2z7x_B 394 ----------DCSWTKSLLSLNMSSNILTDTIFR-----CLPPRIKVLDLHSN-KIKSIPKQVVKLEALQELNVASNQ 455 (520)
T ss_dssp ----------SCCCCTTCCEEECCSSCCCGGGGG-----SCCTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSSC
T ss_pred ----------hhccCccCCEEECcCCCCCcchhh-----hhcccCCEEECCCC-cccccchhhhcCCCCCEEECCCCc
Confidence 123457899999998764333332 22 69999999877 566788877789999999999984
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=99.09 E-value=4.8e-12 Score=116.13 Aligned_cols=260 Identities=11% Similarity=0.054 Sum_probs=146.9
Q ss_pred cccCCcCCCCeeEEEecccCCcccceecCCCchhhhhhhhccccCCCccEEEcccCCC--ccc-ccccCC-C--CCCCCC
Q 020456 4 FSQGIVSTPKLHEVQVTEKNEDELRHWEGNLNSTIQKCYEEMIGFCDIEYLQLSDFPC--LKE-IWHGQA-L--PVSFFN 77 (326)
Q Consensus 4 ~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~--l~~-~~~~~~-l--~~~~~~ 77 (326)
+...+..+++|++|++.++... .. ....+...+..+++|++|+++++.. +.. ++.+.. + ....++
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~------~~---~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~ 94 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIG------TE---AARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCP 94 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEEC------HH---HHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCT
T ss_pred HHHHHhcCCCccEEECCCCCCC------HH---HHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCC
Confidence 3444557889999999832111 11 0111112244589999999998732 221 111100 0 013579
Q ss_pred CccEEEEecCCCCCcCC---chhHHhhCCCCCEEEEccCcCcceecc-cc-ccccc-cCcCCCCCCCccEEecCCCccc-
Q 020456 78 NLEELEVDDCTNMSSAI---PANLLRCLNNLRCLEVRNCDSIEEVLH-LE-ELNAD-KEHISPLFPKLSELRLIDLPKL- 150 (326)
Q Consensus 78 ~L~~L~l~~c~~l~~~~---~~~~~~~l~~L~~L~l~~c~~l~~l~~-~~-~~~~~-~~~~~~~~~~L~~L~l~~c~~L- 150 (326)
+|++|++++|. ++... ....+..+++|++|++++|..-..... .. .+... ........++|+.|+++++.--
T Consensus 95 ~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~ 173 (386)
T 2ca6_A 95 KLHTVRLSDNA-FGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLEN 173 (386)
T ss_dssp TCCEEECCSCC-CCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTG
T ss_pred cccEEECCCCc-CCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCc
Confidence 99999999985 54421 112367899999999999863210000 00 00000 0000000169999999987522
Q ss_pred cccccccccccccccccEEeEecCCCCCccCcch----hhhccCCCCCCceEEecccCccc----ceeccccccccCccc
Q 020456 151 KRFCNFTENIIEMLMLWSLTIENCPNMETFVSNS----VVHVTTDNKKPQKLTLEENFLLA----DQVQPLFDEKVGEEV 222 (326)
Q Consensus 151 ~~~~~~~~~~~~~~~L~~L~l~~C~~l~~~~~~~----~~~~~~~~~~L~~L~i~~~c~~l----~~~~~~~~~~~~~~~ 222 (326)
..++.....+..+++|++|++++| .+....... ....++ +|++|++ .+|.-- ..+..
T Consensus 174 ~~~~~l~~~l~~~~~L~~L~L~~n-~l~~~g~~~l~~~~l~~~~---~L~~L~L-s~n~l~~~g~~~l~~---------- 238 (386)
T 2ca6_A 174 GSMKEWAKTFQSHRLLHTVKMVQN-GIRPEGIEHLLLEGLAYCQ---ELKVLDL-QDNTFTHLGSSALAI---------- 238 (386)
T ss_dssp GGHHHHHHHHHHCTTCCEEECCSS-CCCHHHHHHHHHTTGGGCT---TCCEEEC-CSSCCHHHHHHHHHH----------
T ss_pred HHHHHHHHHHHhCCCcCEEECcCC-CCCHhHHHHHHHHHhhcCC---CccEEEC-cCCCCCcHHHHHHHH----------
Confidence 122211114556789999999998 454321111 222444 8999999 887632 11111
Q ss_pred cceeeecccceeecccCCCccee-----cCCCccccCCcccEEEeccCCccc----cccCCC-CCCCCccEEEecccc
Q 020456 223 KGCIVFERMNYLTLDCLPSLTSF-----CLGNYALEFPSLEQVVVRQCPKMK----IFSQGV-LDTPMLNKVNVTEEE 290 (326)
Q Consensus 223 ~~~~~l~~L~~L~l~~c~~l~~~-----~~~~~~~~~~~L~~L~i~~c~~l~----~l~~~~-~~~~~L~~L~l~~c~ 290 (326)
....+++|++|++.+|. ++.. +.......+++|++|.+++|.--. .+|..+ ..+++|++|++++|.
T Consensus 239 -~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 239 -ALKSWPNLRELGLNDCL-LSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp -HGGGCTTCCEEECTTCC-CCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred -HHccCCCcCEEECCCCC-CchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCc
Confidence 13456899999999986 3322 111100137899999998876333 377655 357999999999984
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.09 E-value=2.1e-09 Score=100.83 Aligned_cols=61 Identities=10% Similarity=0.086 Sum_probs=42.6
Q ss_pred eecccceeecccCCCcceecCCCc------cccCCcccEEEeccCCccccccCCCCCCCCccEEEecccc
Q 020456 227 VFERMNYLTLDCLPSLTSFCLGNY------ALEFPSLEQVVVRQCPKMKIFSQGVLDTPMLNKVNVTEEE 290 (326)
Q Consensus 227 ~l~~L~~L~l~~c~~l~~~~~~~~------~~~~~~L~~L~i~~c~~l~~l~~~~~~~~~L~~L~l~~c~ 290 (326)
.+++|+.|++.+++.+..++.... -..+++|++|+++++ .++.++ +..+++|++|+++++.
T Consensus 284 ~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N-~l~~l~--l~~l~~L~~L~l~~N~ 350 (457)
T 3bz5_A 284 GCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNT-ELTELD--VSHNTKLKSLSCVNAH 350 (457)
T ss_dssp TCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTC-CCSCCC--CTTCTTCSEEECCSSC
T ss_pred ccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCC-cccccc--cccCCcCcEEECCCCC
Confidence 468999999999998877764211 124567777777554 344443 5578999999998873
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=99.05 E-value=1.3e-08 Score=95.29 Aligned_cols=75 Identities=16% Similarity=0.127 Sum_probs=32.1
Q ss_pred ecccceeecccCCCcceecCCCccccCCcccEEEeccCCccc--cccCCCCCC-------------CCccEEEeccccCC
Q 020456 228 FERMNYLTLDCLPSLTSFCLGNYALEFPSLEQVVVRQCPKMK--IFSQGVLDT-------------PMLNKVNVTEEEKD 292 (326)
Q Consensus 228 l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~--~l~~~~~~~-------------~~L~~L~l~~c~~~ 292 (326)
+++|++|++.++ .++.++. .+++|++|+++++.-.. .+|..+..+ ++|++|+++++.-.
T Consensus 336 ~~~L~~L~L~~N-~l~~lp~-----~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~ 409 (454)
T 1jl5_A 336 PPRLERLIASFN-HLAEVPE-----LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLR 409 (454)
T ss_dssp CTTCCEEECCSS-CCSCCCC-----CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC-----------------------
T ss_pred CCcCCEEECCCC-ccccccc-----hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCC
Confidence 478999999986 5666664 46799999998775443 466655544 78999999887422
Q ss_pred CCccccccCchHHHHHHHHHhh
Q 020456 293 DDDEGCWEGNLNDTIKQLFNEI 314 (326)
Q Consensus 293 ~~~~~~~~~~~~~~l~~l~i~~ 314 (326)
.... .+.+++.+.+.+
T Consensus 410 ~~~~------iP~sl~~L~~~~ 425 (454)
T 1jl5_A 410 EFPD------IPESVEDLRMNS 425 (454)
T ss_dssp ----------------------
T ss_pred cccc------chhhHhheeCcC
Confidence 1111 234666665544
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.05 E-value=4.2e-09 Score=102.31 Aligned_cols=73 Identities=12% Similarity=-0.043 Sum_probs=48.5
Q ss_pred cccceeecccCCCcceecCCCccccCCcccEEEeccCCccccccCCCCCCCCccEEEeccccCCCCccccccCchHHHHH
Q 020456 229 ERMNYLTLDCLPSLTSFCLGNYALEFPSLEQVVVRQCPKMKIFSQGVLDTPMLNKVNVTEEEKDDDDEGCWEGNLNDTIK 308 (326)
Q Consensus 229 ~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~l~ 308 (326)
++|++|++.++ .++.++ ..+++|++|+++++ .++.+|. .+++|++|++++|.-. .++..+..+++|+
T Consensus 221 ~~L~~L~Ls~N-~L~~lp-----~~l~~L~~L~Ls~N-~L~~lp~---~~~~L~~L~Ls~N~L~---~lp~~l~~l~~L~ 287 (622)
T 3g06_A 221 SGLKELIVSGN-RLTSLP-----VLPSELKELMVSGN-RLTSLPM---LPSGLLSLSVYRNQLT---RLPESLIHLSSET 287 (622)
T ss_dssp TTCCEEECCSS-CCSCCC-----CCCTTCCEEECCSS-CCSCCCC---CCTTCCEEECCSSCCC---SCCGGGGGSCTTC
T ss_pred CCCCEEEccCC-ccCcCC-----CCCCcCcEEECCCC-CCCcCCc---ccccCcEEeCCCCCCC---cCCHHHhhccccC
Confidence 67888888875 566655 15689999999876 6777877 4789999999988322 2333333344444
Q ss_pred HHHHhh
Q 020456 309 QLFNEI 314 (326)
Q Consensus 309 ~l~i~~ 314 (326)
.+.+++
T Consensus 288 ~L~L~~ 293 (622)
T 3g06_A 288 TVNLEG 293 (622)
T ss_dssp EEECCS
T ss_pred EEEecC
Confidence 444443
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=99.05 E-value=3.5e-09 Score=93.25 Aligned_cols=201 Identities=17% Similarity=0.152 Sum_probs=131.3
Q ss_pred CcCCCCeeEEEecccCCcccceecCCCchhhhhhhhccccCCCccEEEcccCCCcccccccCCCCCCCCCCccEEEEecC
Q 020456 8 IVSTPKLHEVQVTEKNEDELRHWEGNLNSTIQKCYEEMIGFCDIEYLQLSDFPCLKEIWHGQALPVSFFNNLEELEVDDC 87 (326)
Q Consensus 8 ~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~L~~L~l~~c 87 (326)
+.++++++++.+.+.+ +..+-.. ..++++.|+++++.. ..+.... ...+++|++|+++++
T Consensus 6 ~~~l~~l~~l~~~~~~---l~~ip~~-------------~~~~l~~L~L~~N~l-~~~~~~~---~~~l~~L~~L~L~~n 65 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRN---LTALPPD-------------LPKDTTILHLSENLL-YTFSLAT---LMPYTRLTQLNLDRA 65 (290)
T ss_dssp EECSTTCCEEECTTSC---CSSCCSC-------------CCTTCCEEECTTSCC-SEEEGGG---GTTCTTCCEEECTTS
T ss_pred ccccCCccEEECCCCC---CCcCCCC-------------CCCCCCEEEcCCCcC-CccCHHH---hhcCCCCCEEECCCC
Confidence 4578889999888322 2222111 147899999987654 3333222 256789999999987
Q ss_pred CCCCcCCchhHHhhCCCCCEEEEccCcCcceeccccccccccCcCCCCCCCccEEecCCCcccccccccccccccccccc
Q 020456 88 TNMSSAIPANLLRCLNNLRCLEVRNCDSIEEVLHLEELNADKEHISPLFPKLSELRLIDLPKLKRFCNFTENIIEMLMLW 167 (326)
Q Consensus 88 ~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~L~ 167 (326)
. ++.+.+. ..+++|++|+++++. +..++. ....+++|+.|++++. +++.++.. .+..+++|+
T Consensus 66 ~-l~~~~~~---~~l~~L~~L~Ls~N~-l~~l~~----------~~~~l~~L~~L~l~~N-~l~~l~~~--~~~~l~~L~ 127 (290)
T 1p9a_G 66 E-LTKLQVD---GTLPVLGTLDLSHNQ-LQSLPL----------LGQTLPALTVLDVSFN-RLTSLPLG--ALRGLGELQ 127 (290)
T ss_dssp C-CCEEECC---SCCTTCCEEECCSSC-CSSCCC----------CTTTCTTCCEEECCSS-CCCCCCSS--TTTTCTTCC
T ss_pred c-cCcccCC---CCCCcCCEEECCCCc-CCcCch----------hhccCCCCCEEECCCC-cCcccCHH--HHcCCCCCC
Confidence 4 6555442 578999999999864 433321 1124578999999885 46655532 466788999
Q ss_pred EEeEecCCCCCccCcchhhhccCCCCCCceEEecccCcccceeccccccccCccccceeeecccceeecccCCCcceecC
Q 020456 168 SLTIENCPNMETFVSNSVVHVTTDNKKPQKLTLEENFLLADQVQPLFDEKVGEEVKGCIVFERMNYLTLDCLPSLTSFCL 247 (326)
Q Consensus 168 ~L~l~~C~~l~~~~~~~~~~~~~~~~~L~~L~i~~~c~~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~ 247 (326)
.|+++++ .++.++ ......++ +|+.|++ .++. ++.+.... ...+++|++|++.+. .++.++.
T Consensus 128 ~L~L~~N-~l~~~~-~~~~~~l~---~L~~L~L-~~N~-l~~l~~~~----------~~~l~~L~~L~L~~N-~l~~ip~ 189 (290)
T 1p9a_G 128 ELYLKGN-ELKTLP-PGLLTPTP---KLEKLSL-ANNN-LTELPAGL----------LNGLENLDTLLLQEN-SLYTIPK 189 (290)
T ss_dssp EEECTTS-CCCCCC-TTTTTTCT---TCCEEEC-TTSC-CSCCCTTT----------TTTCTTCCEEECCSS-CCCCCCT
T ss_pred EEECCCC-CCCccC-hhhccccc---CCCEEEC-CCCc-CCccCHHH----------hcCcCCCCEEECCCC-cCCccCh
Confidence 9999886 566663 33333455 8999998 7664 44443221 234688999999884 5677776
Q ss_pred CCccccCCcccEEEeccCC
Q 020456 248 GNYALEFPSLEQVVVRQCP 266 (326)
Q Consensus 248 ~~~~~~~~~L~~L~i~~c~ 266 (326)
... ..++|+.+.+.+.+
T Consensus 190 ~~~--~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 190 GFF--GSHLLPFAFLHGNP 206 (290)
T ss_dssp TTT--TTCCCSEEECCSCC
T ss_pred hhc--ccccCCeEEeCCCC
Confidence 554 56789999888543
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.99 E-value=6.1e-09 Score=92.50 Aligned_cols=208 Identities=16% Similarity=0.154 Sum_probs=117.6
Q ss_pred CCCccEEEcccCCCcccccccCCCCCCCCCCccEEEEecCCCCCcCCch---hHHhhCCCCCEEEEccCcCcceeccccc
Q 020456 48 FCDIEYLQLSDFPCLKEIWHGQALPVSFFNNLEELEVDDCTNMSSAIPA---NLLRCLNNLRCLEVRNCDSIEEVLHLEE 124 (326)
Q Consensus 48 ~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~---~~~~~l~~L~~L~l~~c~~l~~l~~~~~ 124 (326)
+++|++|+++++.-....+... . ...+++|++|+++++. ++...+. ..+..+++|++|+++++.- ..++.
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~-~-~~~~~~L~~L~Ls~n~-i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l-~~~~~--- 162 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLP-L-EATGLALSSLRLRNVS-WATGRSWLAELQQWLKPGLKVLSIAQAHS-PAFSC--- 162 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCS-S-SCCCBCCSSCEEESCC-CSSTTSSHHHHHTTBCSCCCEEEEECCSS-CCCCT---
T ss_pred cCceeEEEeeCCEeccchhhhh-h-hccCCCCCEEEeeccc-ccchhhhhHHHHhhhccCCCEEEeeCCCc-chhhH---
Confidence 4568888887765433322111 0 0456788888888875 4332221 1123578888888887653 22211
Q ss_pred cccccCcCCCCCCCccEEecCCCccccc--cccccccccccccccEEeEecCCCCCccCcc--hhhhccCCCCCCceEEe
Q 020456 125 LNADKEHISPLFPKLSELRLIDLPKLKR--FCNFTENIIEMLMLWSLTIENCPNMETFVSN--SVVHVTTDNKKPQKLTL 200 (326)
Q Consensus 125 ~~~~~~~~~~~~~~L~~L~l~~c~~L~~--~~~~~~~~~~~~~L~~L~l~~C~~l~~~~~~--~~~~~~~~~~~L~~L~i 200 (326)
.....+++|+.|+++++.-... ++... .+..+++|++|++++| +++.+... .+...+. +|++|++
T Consensus 163 ------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~~l~---~L~~L~L 231 (310)
T 4glp_A 163 ------EQVRAFPALTSLDLSDNPGLGERGLMAAL-CPHKFPAIQNLALRNT-GMETPTGVCAALAAAGV---QPHSLDL 231 (310)
T ss_dssp ------TSCCCCTTCCEEECCSCTTCHHHHHHTTS-CTTSSCCCCSCBCCSS-CCCCHHHHHHHHHHHTC---CCSSEEC
T ss_pred ------HHhccCCCCCEEECCCCCCccchhhhHHH-hhhcCCCCCEEECCCC-CCCchHHHHHHHHhcCC---CCCEEEC
Confidence 0111356888888888753321 21110 2346788888888886 45543211 1223445 8888888
Q ss_pred cccCcccceeccccccccCccccceeeecccceeecccCCCcceecCCCccccCCcccEEEeccCCccccccCCCCCCCC
Q 020456 201 EENFLLADQVQPLFDEKVGEEVKGCIVFERMNYLTLDCLPSLTSFCLGNYALEFPSLEQVVVRQCPKMKIFSQGVLDTPM 280 (326)
Q Consensus 201 ~~~c~~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~~ 280 (326)
.++. +..+.+.. . .....+++|++|++.++ .++.++... .++|++|+++++ .++.+|. ...+++
T Consensus 232 -s~N~-l~~~~p~~------~-~~~~~~~~L~~L~Ls~N-~l~~lp~~~----~~~L~~L~Ls~N-~l~~~~~-~~~l~~ 295 (310)
T 4glp_A 232 -SHNS-LRATVNPS------A-PRCMWSSALNSLNLSFA-GLEQVPKGL----PAKLRVLDLSSN-RLNRAPQ-PDELPE 295 (310)
T ss_dssp -TTSC-CCCCCCSC------C-SSCCCCTTCCCEECCSS-CCCSCCSCC----CSCCSCEECCSC-CCCSCCC-TTSCCC
T ss_pred -CCCC-CCccchhh------H-HhccCcCcCCEEECCCC-CCCchhhhh----cCCCCEEECCCC-cCCCCch-hhhCCC
Confidence 7665 33321110 0 00112268888888875 455665432 368888888665 4555554 345788
Q ss_pred ccEEEeccc
Q 020456 281 LNKVNVTEE 289 (326)
Q Consensus 281 L~~L~l~~c 289 (326)
|++|+++++
T Consensus 296 L~~L~L~~N 304 (310)
T 4glp_A 296 VDNLTLDGN 304 (310)
T ss_dssp CSCEECSST
T ss_pred ccEEECcCC
Confidence 888888776
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=98.99 E-value=1.9e-09 Score=89.35 Aligned_cols=151 Identities=15% Similarity=0.169 Sum_probs=76.2
Q ss_pred CCCCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccCcCcceeccccccccccCcCCCCCCCccEEecCCCcccccc
Q 020456 74 SFFNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNCDSIEEVLHLEELNADKEHISPLFPKLSELRLIDLPKLKRF 153 (326)
Q Consensus 74 ~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~ 153 (326)
..+++|++|+++++. +++++ . +..+++|++|++++| .++.+
T Consensus 41 ~~l~~L~~L~l~~n~-i~~l~-~--l~~l~~L~~L~l~~n-~~~~~---------------------------------- 81 (197)
T 4ezg_A 41 AQMNSLTYITLANIN-VTDLT-G--IEYAHNIKDLTINNI-HATNY---------------------------------- 81 (197)
T ss_dssp HHHHTCCEEEEESSC-CSCCT-T--GGGCTTCSEEEEESC-CCSCC----------------------------------
T ss_pred hhcCCccEEeccCCC-ccChH-H--HhcCCCCCEEEccCC-CCCcc----------------------------------
Confidence 346778888887763 44443 2 566777777777776 23221
Q ss_pred ccccccccccccccEEeEecCCCCCccCcchhhhccCCCCCCceEEecccCcccceeccccccccCccccceeeecccce
Q 020456 154 CNFTENIIEMLMLWSLTIENCPNMETFVSNSVVHVTTDNKKPQKLTLEENFLLADQVQPLFDEKVGEEVKGCIVFERMNY 233 (326)
Q Consensus 154 ~~~~~~~~~~~~L~~L~l~~C~~l~~~~~~~~~~~~~~~~~L~~L~i~~~c~~l~~~~~~~~~~~~~~~~~~~~l~~L~~ 233 (326)
+ .+..+++|++|++++| .++...+..+. .++ +|++|++ .+|.-....... ...+++|++
T Consensus 82 ~----~l~~l~~L~~L~l~~n-~l~~~~~~~l~-~l~---~L~~L~L-s~n~i~~~~~~~-----------l~~l~~L~~ 140 (197)
T 4ezg_A 82 N----PISGLSNLERLRIMGK-DVTSDKIPNLS-GLT---SLTLLDI-SHSAHDDSILTK-----------INTLPKVNS 140 (197)
T ss_dssp G----GGTTCTTCCEEEEECT-TCBGGGSCCCT-TCT---TCCEEEC-CSSBCBGGGHHH-----------HTTCSSCCE
T ss_pred h----hhhcCCCCCEEEeECC-ccCcccChhhc-CCC---CCCEEEe-cCCccCcHhHHH-----------HhhCCCCCE
Confidence 1 1233455555555553 23221111111 223 5555555 444322111100 223455666
Q ss_pred eecccCCCcceecCCCccccCCcccEEEeccCCccccccCCCCCCCCccEEEeccc
Q 020456 234 LTLDCLPSLTSFCLGNYALEFPSLEQVVVRQCPKMKIFSQGVLDTPMLNKVNVTEE 289 (326)
Q Consensus 234 L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~~L~~L~l~~c 289 (326)
|++.+|..++.++. . ..+++|++|++++|. ++.++ .+..+++|++|+++++
T Consensus 141 L~L~~n~~i~~~~~-l--~~l~~L~~L~l~~n~-i~~~~-~l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 141 IDLSYNGAITDIMP-L--KTLPELKSLNIQFDG-VHDYR-GIEDFPKLNQLYAFSQ 191 (197)
T ss_dssp EECCSCTBCCCCGG-G--GGCSSCCEEECTTBC-CCCCT-TGGGCSSCCEEEECBC
T ss_pred EEccCCCCccccHh-h--cCCCCCCEEECCCCC-CcChH-HhccCCCCCEEEeeCc
Confidence 66666554555442 1 156677777776553 44444 3445677777777665
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=98.96 E-value=8.1e-09 Score=85.46 Aligned_cols=129 Identities=12% Similarity=0.196 Sum_probs=79.2
Q ss_pred cCCCccEEEcccCCCcccccccCCCCCCCCCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccCcCcceeccccccc
Q 020456 47 GFCDIEYLQLSDFPCLKEIWHGQALPVSFFNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNCDSIEEVLHLEELN 126 (326)
Q Consensus 47 ~~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~ 126 (326)
.+++|++|++.++. +..++ +. ..+++|++|++++| .++... . +..+++|++|+++++.--...+.
T Consensus 42 ~l~~L~~L~l~~n~-i~~l~-~l----~~l~~L~~L~l~~n-~~~~~~-~--l~~l~~L~~L~l~~n~l~~~~~~----- 106 (197)
T 4ezg_A 42 QMNSLTYITLANIN-VTDLT-GI----EYAHNIKDLTINNI-HATNYN-P--ISGLSNLERLRIMGKDVTSDKIP----- 106 (197)
T ss_dssp HHHTCCEEEEESSC-CSCCT-TG----GGCTTCSEEEEESC-CCSCCG-G--GTTCTTCCEEEEECTTCBGGGSC-----
T ss_pred hcCCccEEeccCCC-ccChH-HH----hcCCCCCEEEccCC-CCCcch-h--hhcCCCCCEEEeECCccCcccCh-----
Confidence 37899999999754 34433 22 57899999999999 555442 2 67899999999998652211110
Q ss_pred cccCcCCCCCCCccEEecCCCccccccccccccccccccccEEeEecCCCCCccCcchhhhccCCCCCCceEEecccCc
Q 020456 127 ADKEHISPLFPKLSELRLIDLPKLKRFCNFTENIIEMLMLWSLTIENCPNMETFVSNSVVHVTTDNKKPQKLTLEENFL 205 (326)
Q Consensus 127 ~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~L~~L~l~~C~~l~~~~~~~~~~~~~~~~~L~~L~i~~~c~ 205 (326)
....+++|+.|+++++.--...+. .+..+++|++|++++|..++.++ . ...++ +|++|++ .+|.
T Consensus 107 -----~l~~l~~L~~L~Ls~n~i~~~~~~---~l~~l~~L~~L~L~~n~~i~~~~--~-l~~l~---~L~~L~l-~~n~ 170 (197)
T 4ezg_A 107 -----NLSGLTSLTLLDISHSAHDDSILT---KINTLPKVNSIDLSYNGAITDIM--P-LKTLP---ELKSLNI-QFDG 170 (197)
T ss_dssp -----CCTTCTTCCEEECCSSBCBGGGHH---HHTTCSSCCEEECCSCTBCCCCG--G-GGGCS---SCCEEEC-TTBC
T ss_pred -----hhcCCCCCCEEEecCCccCcHhHH---HHhhCCCCCEEEccCCCCccccH--h-hcCCC---CCCEEEC-CCCC
Confidence 011345777777777542222222 44556777777777765455542 1 22333 6666666 5543
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.94 E-value=1.7e-09 Score=96.02 Aligned_cols=189 Identities=15% Similarity=0.125 Sum_probs=120.5
Q ss_pred ccCCCccEEEcccCCCcccccccCCCCCCCCCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccCcCcceecccccc
Q 020456 46 IGFCDIEYLQLSDFPCLKEIWHGQALPVSFFNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNCDSIEEVLHLEEL 125 (326)
Q Consensus 46 ~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~ 125 (326)
..+++|++|+++++.-..............+++|++|++++|. +...++.. ++.+++|++|+++++...... +.
T Consensus 114 ~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~-~~~l~~L~~L~Ls~N~l~~~~----~~ 187 (310)
T 4glp_A 114 ATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAH-SPAFSCEQ-VRAFPALTSLDLSDNPGLGER----GL 187 (310)
T ss_dssp CCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCS-SCCCCTTS-CCCCTTCCEEECCSCTTCHHH----HH
T ss_pred ccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCC-cchhhHHH-hccCCCCCEEECCCCCCccch----hh
Confidence 4589999999998764332110000111357999999999985 55655433 678999999999998643211 00
Q ss_pred ccccCcCCCCCCCccEEecCCCcccccccccccc-ccccccccEEeEecCCCCCccCcchhhhc--cCCCCCCceEEecc
Q 020456 126 NADKEHISPLFPKLSELRLIDLPKLKRFCNFTEN-IIEMLMLWSLTIENCPNMETFVSNSVVHV--TTDNKKPQKLTLEE 202 (326)
Q Consensus 126 ~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~-~~~~~~L~~L~l~~C~~l~~~~~~~~~~~--~~~~~~L~~L~i~~ 202 (326)
. .......+++|++|+++++. ++.++..... +..+++|++|+++++ .+....|..+... .+ +|++|++ .
T Consensus 188 ~--~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~~l~~L~~L~Ls~N-~l~~~~p~~~~~~~~~~---~L~~L~L-s 259 (310)
T 4glp_A 188 M--AALCPHKFPAIQNLALRNTG-METPTGVCAALAAAGVQPHSLDLSHN-SLRATVNPSAPRCMWSS---ALNSLNL-S 259 (310)
T ss_dssp H--TTSCTTSSCCCCSCBCCSSC-CCCHHHHHHHHHHHTCCCSSEECTTS-CCCCCCCSCCSSCCCCT---TCCCEEC-C
T ss_pred h--HHHhhhcCCCCCEEECCCCC-CCchHHHHHHHHhcCCCCCEEECCCC-CCCccchhhHHhccCcC---cCCEEEC-C
Confidence 0 00111246799999999874 5544431111 356799999999986 4666534333322 24 8999999 7
Q ss_pred cCcccceeccccccccCccccceeeecccceeecccCCCcceecCCCccccCCcccEEEeccCC
Q 020456 203 NFLLADQVQPLFDEKVGEEVKGCIVFERMNYLTLDCLPSLTSFCLGNYALEFPSLEQVVVRQCP 266 (326)
Q Consensus 203 ~c~~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~ 266 (326)
++. ++.+... .+++|+.|++.++ .++.++.. ..+++|++|++++.+
T Consensus 260 ~N~-l~~lp~~-------------~~~~L~~L~Ls~N-~l~~~~~~---~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 260 FAG-LEQVPKG-------------LPAKLRVLDLSSN-RLNRAPQP---DELPEVDNLTLDGNP 305 (310)
T ss_dssp SSC-CCSCCSC-------------CCSCCSCEECCSC-CCCSCCCT---TSCCCCSCEECSSTT
T ss_pred CCC-CCchhhh-------------hcCCCCEEECCCC-cCCCCchh---hhCCCccEEECcCCC
Confidence 765 4444222 2379999999985 45665441 277999999997654
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.93 E-value=3.9e-09 Score=93.90 Aligned_cols=213 Identities=15% Similarity=0.115 Sum_probs=132.6
Q ss_pred CCCCeeEEEecccCCcccceecCCCchhhhhhhhccccCCCccEEEcccCCCcccccccC-CCCCCCCCCccEEEEecCC
Q 020456 10 STPKLHEVQVTEKNEDELRHWEGNLNSTIQKCYEEMIGFCDIEYLQLSDFPCLKEIWHGQ-ALPVSFFNNLEELEVDDCT 88 (326)
Q Consensus 10 ~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~-~l~~~~~~~L~~L~l~~c~ 88 (326)
++++|++|++.+.... +.....+ + ...+++|++|+++++.- ..++... .++....++|++|+++++.
T Consensus 93 ~l~~L~~L~L~~n~l~------~~~~~~~---~--~~~l~~L~~L~Ls~N~l-~~~~~~~~~l~~~~~~~L~~L~L~~N~ 160 (312)
T 1wwl_A 93 GISGLQELTLENLEVT------GTAPPPL---L--EATGPDLNILNLRNVSW-ATRDAWLAELQQWLKPGLKVLSIAQAH 160 (312)
T ss_dssp TTSCCCEEEEEEEBCB------SCCCCCS---S--SCCSCCCSEEEEESCBC-SSSSSHHHHHHTTCCTTCCEEEEESCS
T ss_pred CcCCccEEEccCCccc------chhHHHH---H--HhcCCCccEEEccCCCC-cchhHHHHHHHHhhcCCCcEEEeeCCC
Confidence 5889999999943222 1100000 0 13589999999997653 3322111 0111123899999999985
Q ss_pred CCCcCCchhHHhhCCCCCEEEEccCcCcceeccccccccccCcCCCCCCCccEEecCCCccccccccccc-ccccccccc
Q 020456 89 NMSSAIPANLLRCLNNLRCLEVRNCDSIEEVLHLEELNADKEHISPLFPKLSELRLIDLPKLKRFCNFTE-NIIEMLMLW 167 (326)
Q Consensus 89 ~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~-~~~~~~~L~ 167 (326)
+....+.. ++.+++|++|+++++.....+...... ....+++|+.|+++++. ++.++.... .+..+++|+
T Consensus 161 -l~~~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~------~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~~l~~L~ 231 (312)
T 1wwl_A 161 -SLNFSCEQ-VRVFPALSTLDLSDNPELGERGLISAL------CPLKFPTLQVLALRNAG-METPSGVCSALAAARVQLQ 231 (312)
T ss_dssp -CCCCCTTT-CCCCSSCCEEECCSCTTCHHHHHHHHS------CTTSCTTCCEEECTTSC-CCCHHHHHHHHHHTTCCCS
T ss_pred -CccchHHH-hccCCCCCEEECCCCCcCcchHHHHHH------HhccCCCCCEEECCCCc-CcchHHHHHHHHhcCCCCC
Confidence 66666443 678999999999998643321000000 11245799999999874 553322110 224568999
Q ss_pred EEeEecCCCCCccCcchhhhccCCCCCCceEEecccCcccceeccccccccCccccceeeecccceeecccCCCcceecC
Q 020456 168 SLTIENCPNMETFVSNSVVHVTTDNKKPQKLTLEENFLLADQVQPLFDEKVGEEVKGCIVFERMNYLTLDCLPSLTSFCL 247 (326)
Q Consensus 168 ~L~l~~C~~l~~~~~~~~~~~~~~~~~L~~L~i~~~c~~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~ 247 (326)
.|+++++ .+....+......+. +|++|++ .++. ++.+... . +++|++|++.+. .++.++.
T Consensus 232 ~L~Ls~N-~l~~~~~~~~~~~l~---~L~~L~L-s~N~-l~~ip~~-----------~--~~~L~~L~Ls~N-~l~~~p~ 291 (312)
T 1wwl_A 232 GLDLSHN-SLRDAAGAPSCDWPS---QLNSLNL-SFTG-LKQVPKG-----------L--PAKLSVLDLSYN-RLDRNPS 291 (312)
T ss_dssp EEECTTS-CCCSSCCCSCCCCCT---TCCEEEC-TTSC-CSSCCSS-----------C--CSEEEEEECCSS-CCCSCCC
T ss_pred EEECCCC-cCCcccchhhhhhcC---CCCEEEC-CCCc-cChhhhh-----------c--cCCceEEECCCC-CCCCChh
Confidence 9999986 455543323333345 9999999 8776 4444222 1 178999999985 5676655
Q ss_pred CCccccCCcccEEEeccCC
Q 020456 248 GNYALEFPSLEQVVVRQCP 266 (326)
Q Consensus 248 ~~~~~~~~~L~~L~i~~c~ 266 (326)
.. .+++|++|++++.+
T Consensus 292 -~~--~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 292 -PD--ELPQVGNLSLKGNP 307 (312)
T ss_dssp -TT--TSCEEEEEECTTCT
T ss_pred -Hh--hCCCCCEEeccCCC
Confidence 22 78999999997653
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=98.93 E-value=7.9e-09 Score=91.04 Aligned_cols=167 Identities=17% Similarity=0.233 Sum_probs=101.6
Q ss_pred CCCccEEEcccCCCcccccccCCCCCCCCCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccCcCcceecccccccc
Q 020456 48 FCDIEYLQLSDFPCLKEIWHGQALPVSFFNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNCDSIEEVLHLEELNA 127 (326)
Q Consensus 48 ~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~ 127 (326)
+++|+.|++.++. +..+. .. ..+++|++|++++|. ++.+.+ +..+++|++|+++++. +..+..
T Consensus 45 l~~L~~L~l~~~~-i~~~~-~~----~~l~~L~~L~L~~n~-l~~~~~---l~~l~~L~~L~l~~n~-l~~~~~------ 107 (291)
T 1h6t_A 45 LNSIDQIIANNSD-IKSVQ-GI----QYLPNVTKLFLNGNK-LTDIKP---LANLKNLGWLFLDENK-VKDLSS------ 107 (291)
T ss_dssp HHTCCEEECTTSC-CCCCT-TG----GGCTTCCEEECCSSC-CCCCGG---GTTCTTCCEEECCSSC-CCCGGG------
T ss_pred cCcccEEEccCCC-cccCh-hH----hcCCCCCEEEccCCc-cCCCcc---cccCCCCCEEECCCCc-CCCChh------
Confidence 6778888887653 33321 12 457888888888874 555443 5678888888888764 333211
Q ss_pred ccCcCCCCCCCccEEecCCCccccccccccccccccccccEEeEecCCCCCccCcchhhhccCCCCCCceEEecccCccc
Q 020456 128 DKEHISPLFPKLSELRLIDLPKLKRFCNFTENIIEMLMLWSLTIENCPNMETFVSNSVVHVTTDNKKPQKLTLEENFLLA 207 (326)
Q Consensus 128 ~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~L~~L~l~~C~~l~~~~~~~~~~~~~~~~~L~~L~i~~~c~~l 207 (326)
...+++|+.|+++++. ++.++ .+..+++|+.|++++| .++.+ .....++ +|++|++ .+|. +
T Consensus 108 -----l~~l~~L~~L~L~~n~-i~~~~----~l~~l~~L~~L~l~~n-~l~~~---~~l~~l~---~L~~L~L-~~N~-l 168 (291)
T 1h6t_A 108 -----LKDLKKLKSLSLEHNG-ISDIN----GLVHLPQLESLYLGNN-KITDI---TVLSRLT---KLDTLSL-EDNQ-I 168 (291)
T ss_dssp -----GTTCTTCCEEECTTSC-CCCCG----GGGGCTTCCEEECCSS-CCCCC---GGGGGCT---TCSEEEC-CSSC-C
T ss_pred -----hccCCCCCEEECCCCc-CCCCh----hhcCCCCCCEEEccCC-cCCcc---hhhccCC---CCCEEEc-cCCc-c
Confidence 1134678888887763 55443 4566788888888776 44444 1222344 7888888 6664 3
Q ss_pred ceeccccccccCccccceeeecccceeecccCCCcceecCCCccccCCcccEEEeccCC
Q 020456 208 DQVQPLFDEKVGEEVKGCIVFERMNYLTLDCLPSLTSFCLGNYALEFPSLEQVVVRQCP 266 (326)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~ 266 (326)
+.+.+ ...+++|+.|++.++ .++.++. . ..+++|+.|++++++
T Consensus 169 ~~~~~------------l~~l~~L~~L~L~~N-~i~~l~~-l--~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 169 SDIVP------------LAGLTKLQNLYLSKN-HISDLRA-L--AGLKNLDVLELFSQE 211 (291)
T ss_dssp CCCGG------------GTTCTTCCEEECCSS-CCCBCGG-G--TTCTTCSEEEEEEEE
T ss_pred ccchh------------hcCCCccCEEECCCC-cCCCChh-h--ccCCCCCEEECcCCc
Confidence 33211 224577888888775 4555543 1 167778888776654
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=98.92 E-value=4.3e-10 Score=103.07 Aligned_cols=226 Identities=14% Similarity=0.102 Sum_probs=134.7
Q ss_pred hhhccccCCCccEEEcccCCCcccccccCCCCCCCCCCccEEEEecC--CCCCcCCchhH------HhhCCCCCEEEEcc
Q 020456 41 CYEEMIGFCDIEYLQLSDFPCLKEIWHGQALPVSFFNNLEELEVDDC--TNMSSAIPANL------LRCLNNLRCLEVRN 112 (326)
Q Consensus 41 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~L~~L~l~~c--~~l~~~~~~~~------~~~l~~L~~L~l~~ 112 (326)
+...+..+++|++|+++++.--...+....-....+++|++|++++| ..++...|..+ +..+++|++|++++
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~ 103 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD 103 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence 33345568999999999875432211110000146899999999998 33333334332 36889999999998
Q ss_pred CcCcceeccccccccccCcCCCCCCCccEEecCCCcccccccc--cccccccc---------ccccEEeEecCCCCCccC
Q 020456 113 CDSIEEVLHLEELNADKEHISPLFPKLSELRLIDLPKLKRFCN--FTENIIEM---------LMLWSLTIENCPNMETFV 181 (326)
Q Consensus 113 c~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~--~~~~~~~~---------~~L~~L~l~~C~~l~~~~ 181 (326)
+..-..-. ..... ....+++|+.|++++|. +..... ....+..+ ++|++|++++|. +....
T Consensus 104 n~l~~~~~--~~l~~----~l~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~-l~~~~ 175 (386)
T 2ca6_A 104 NAFGPTAQ--EPLID----FLSKHTPLEHLYLHNNG-LGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR-LENGS 175 (386)
T ss_dssp CCCCTTTH--HHHHH----HHHHCTTCCEEECCSSC-CHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC-CTGGG
T ss_pred CcCCHHHH--HHHHH----HHHhCCCCCEEECcCCC-CCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC-CCcHH
Confidence 75321000 00000 01134799999999986 321110 00023333 899999999874 54322
Q ss_pred cch---hhhccCCCCCCceEEecccCcccce----eccccccccCccccceeeecccceeecccCCCc----ceecCCCc
Q 020456 182 SNS---VVHVTTDNKKPQKLTLEENFLLADQ----VQPLFDEKVGEEVKGCIVFERMNYLTLDCLPSL----TSFCLGNY 250 (326)
Q Consensus 182 ~~~---~~~~~~~~~~L~~L~i~~~c~~l~~----~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l----~~~~~~~~ 250 (326)
... ....++ +|++|++ .+|.--.. +.+. ....+++|++|++.++.-- ..++....
T Consensus 176 ~~~l~~~l~~~~---~L~~L~L-~~n~l~~~g~~~l~~~----------~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~ 241 (386)
T 2ca6_A 176 MKEWAKTFQSHR---LLHTVKM-VQNGIRPEGIEHLLLE----------GLAYCQELKVLDLQDNTFTHLGSSALAIALK 241 (386)
T ss_dssp HHHHHHHHHHCT---TCCEEEC-CSSCCCHHHHHHHHHT----------TGGGCTTCCEEECCSSCCHHHHHHHHHHHGG
T ss_pred HHHHHHHHHhCC---CcCEEEC-cCCCCCHhHHHHHHHH----------HhhcCCCccEEECcCCCCCcHHHHHHHHHHc
Confidence 222 222455 9999999 88853211 1110 1345689999999997631 33333222
Q ss_pred cccCCcccEEEeccCCcccc----ccCCC--CCCCCccEEEecccc
Q 020456 251 ALEFPSLEQVVVRQCPKMKI----FSQGV--LDTPMLNKVNVTEEE 290 (326)
Q Consensus 251 ~~~~~~L~~L~i~~c~~l~~----l~~~~--~~~~~L~~L~l~~c~ 290 (326)
.+++|++|.+++|.--.. ++..+ ..+++|++|++++|.
T Consensus 242 --~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~ 285 (386)
T 2ca6_A 242 --SWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNE 285 (386)
T ss_dssp --GCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSC
T ss_pred --cCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCc
Confidence 688999999998863222 44544 238999999999983
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=98.92 E-value=2.4e-08 Score=85.77 Aligned_cols=128 Identities=16% Similarity=0.135 Sum_probs=65.1
Q ss_pred CCccEEEcccCCCcccccccCCCCCCCCCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccCcCcceeccccccccc
Q 020456 49 CDIEYLQLSDFPCLKEIWHGQALPVSFFNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNCDSIEEVLHLEELNAD 128 (326)
Q Consensus 49 ~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~ 128 (326)
++.+++++.+. .+..++. ...+++++|+++++. ++.+.+.. +..+++|++|+++++. +..+.+
T Consensus 14 ~~~~~l~~~~~-~l~~~p~------~~~~~l~~L~L~~n~-l~~~~~~~-~~~l~~L~~L~L~~n~-l~~~~~------- 76 (251)
T 3m19_A 14 EGKKEVDCQGK-SLDSVPS------GIPADTEKLDLQSTG-LATLSDAT-FRGLTKLTWLNLDYNQ-LQTLSA------- 76 (251)
T ss_dssp GGGTEEECTTC-CCSSCCS------CCCTTCCEEECTTSC-CCCCCTTT-TTTCTTCCEEECTTSC-CCCCCT-------
T ss_pred CCCeEEecCCC-CccccCC------CCCCCCCEEEccCCC-cCccCHhH-hcCcccCCEEECCCCc-CCccCH-------
Confidence 35666766643 3344332 233678888888874 55554432 5678888888888753 332211
Q ss_pred cCcCCCCCCCccEEecCCCccccccccccccccccccccEEeEecCCCCCccCcchhhhccCCCCCCceEEecccC
Q 020456 129 KEHISPLFPKLSELRLIDLPKLKRFCNFTENIIEMLMLWSLTIENCPNMETFVSNSVVHVTTDNKKPQKLTLEENF 204 (326)
Q Consensus 129 ~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~L~~L~l~~C~~l~~~~~~~~~~~~~~~~~L~~L~i~~~c 204 (326)
.....+++|+.|+++++. ++.++.. .+..+++|++|+++++ .++.+++ .....+. +|++|++ .++
T Consensus 77 --~~~~~l~~L~~L~L~~n~-l~~~~~~--~~~~l~~L~~L~L~~N-~l~~~~~-~~~~~l~---~L~~L~L-s~N 141 (251)
T 3m19_A 77 --GVFDDLTELGTLGLANNQ-LASLPLG--VFDHLTQLDKLYLGGN-QLKSLPS-GVFDRLT---KLKELRL-NTN 141 (251)
T ss_dssp --TTTTTCTTCCEEECTTSC-CCCCCTT--TTTTCTTCCEEECCSS-CCCCCCT-TTTTTCT---TCCEEEC-CSS
T ss_pred --hHhccCCcCCEEECCCCc-ccccChh--HhcccCCCCEEEcCCC-cCCCcCh-hHhccCC---cccEEEC-cCC
Confidence 011123466666665542 3333321 2344566666666554 4444422 2222233 5555555 443
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=98.90 E-value=1.5e-08 Score=89.26 Aligned_cols=145 Identities=19% Similarity=0.221 Sum_probs=76.5
Q ss_pred cCCCccEEEcccCCCcccccccCCCCCCCCCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccCcCcceeccccccc
Q 020456 47 GFCDIEYLQLSDFPCLKEIWHGQALPVSFFNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNCDSIEEVLHLEELN 126 (326)
Q Consensus 47 ~~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~ 126 (326)
.+++|++|+++++.- ..+.. ...+++|++|+++++. ++.+. . +..+++|++|++++|. +..+. ..
T Consensus 66 ~l~~L~~L~L~~n~l-~~~~~-----l~~l~~L~~L~l~~n~-l~~~~-~--l~~l~~L~~L~L~~n~-i~~~~---~l- 130 (291)
T 1h6t_A 66 YLPNVTKLFLNGNKL-TDIKP-----LANLKNLGWLFLDENK-VKDLS-S--LKDLKKLKSLSLEHNG-ISDIN---GL- 130 (291)
T ss_dssp GCTTCCEEECCSSCC-CCCGG-----GTTCTTCCEEECCSSC-CCCGG-G--GTTCTTCCEEECTTSC-CCCCG---GG-
T ss_pred cCCCCCEEEccCCcc-CCCcc-----cccCCCCCEEECCCCc-CCCCh-h--hccCCCCCEEECCCCc-CCCCh---hh-
Confidence 466777777765432 32221 1456677777777663 44432 2 5566777777776653 32221 00
Q ss_pred cccCcCCCCCCCccEEecCCCccccccccccccccccccccEEeEecCCCCCccCcchhhhccCCCCCCceEEecccCcc
Q 020456 127 ADKEHISPLFPKLSELRLIDLPKLKRFCNFTENIIEMLMLWSLTIENCPNMETFVSNSVVHVTTDNKKPQKLTLEENFLL 206 (326)
Q Consensus 127 ~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~L~~L~l~~C~~l~~~~~~~~~~~~~~~~~L~~L~i~~~c~~ 206 (326)
..+++|+.|+++++. ++.++ .+..+++|+.|++++| .+..+.+ ...++ +|++|++ .++.
T Consensus 131 -------~~l~~L~~L~l~~n~-l~~~~----~l~~l~~L~~L~L~~N-~l~~~~~---l~~l~---~L~~L~L-~~N~- 189 (291)
T 1h6t_A 131 -------VHLPQLESLYLGNNK-ITDIT----VLSRLTKLDTLSLEDN-QISDIVP---LAGLT---KLQNLYL-SKNH- 189 (291)
T ss_dssp -------GGCTTCCEEECCSSC-CCCCG----GGGGCTTCSEEECCSS-CCCCCGG---GTTCT---TCCEEEC-CSSC-
T ss_pred -------cCCCCCCEEEccCCc-CCcch----hhccCCCCCEEEccCC-ccccchh---hcCCC---ccCEEEC-CCCc-
Confidence 123567777776653 44432 4555677777777665 4444432 22333 6777776 5553
Q ss_pred cceeccccccccCccccceeeecccceeecccC
Q 020456 207 ADQVQPLFDEKVGEEVKGCIVFERMNYLTLDCL 239 (326)
Q Consensus 207 l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c 239 (326)
++.+.. ...+++|+.|++.++
T Consensus 190 i~~l~~------------l~~l~~L~~L~l~~n 210 (291)
T 1h6t_A 190 ISDLRA------------LAGLKNLDVLELFSQ 210 (291)
T ss_dssp CCBCGG------------GTTCTTCSEEEEEEE
T ss_pred CCCChh------------hccCCCCCEEECcCC
Confidence 332211 223466666666664
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=98.89 E-value=1.7e-10 Score=108.00 Aligned_cols=192 Identities=11% Similarity=0.122 Sum_probs=98.5
Q ss_pred CCccEEEEecCCCCCcCC---chhHHhhCCCCCEEEEccCcCcceeccccccccccCcCCCCCCCccEEecCCCccccc-
Q 020456 77 NNLEELEVDDCTNMSSAI---PANLLRCLNNLRCLEVRNCDSIEEVLHLEELNADKEHISPLFPKLSELRLIDLPKLKR- 152 (326)
Q Consensus 77 ~~L~~L~l~~c~~l~~~~---~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~- 152 (326)
++|++|++++|. ++... ....+..+++|++|++++|. +... +...........+++|+.|++++| .++.
T Consensus 199 ~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~----~~~~l~~~~~~~~~~L~~L~L~~n-~l~~~ 271 (461)
T 1z7x_W 199 CQLEALKLESCG-VTSDNCRDLCGIVASKASLRELALGSNK-LGDV----GMAELCPGLLHPSSRLRTLWIWEC-GITAK 271 (461)
T ss_dssp CCCCEEECTTSC-CBTTHHHHHHHHHHHCTTCCEEECCSSB-CHHH----HHHHHHHHHTSTTCCCCEEECTTS-CCCHH
T ss_pred CCceEEEccCCC-CcHHHHHHHHHHHHhCCCccEEeccCCc-CChH----HHHHHHHHHhcCCCCceEEECcCC-CCCHH
Confidence 466666666663 33321 01224456666666666653 2111 000000000112457888888777 3443
Q ss_pred ----cccccccccccccccEEeEecCCCCCccCcchhhhccCC-CCCCceEEecccCcccceeccccccccCccccceee
Q 020456 153 ----FCNFTENIIEMLMLWSLTIENCPNMETFVSNSVVHVTTD-NKKPQKLTLEENFLLADQVQPLFDEKVGEEVKGCIV 227 (326)
Q Consensus 153 ----~~~~~~~~~~~~~L~~L~l~~C~~l~~~~~~~~~~~~~~-~~~L~~L~i~~~c~~l~~~~~~~~~~~~~~~~~~~~ 227 (326)
++. .+..+++|++|+++++ .+.......+...+.. .++|++|++ .+|.--.... . ........
T Consensus 272 ~~~~l~~---~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L-~~n~l~~~~~-~------~l~~~l~~ 339 (461)
T 1z7x_W 272 GCGDLCR---VLRAKESLKELSLAGN-ELGDEGARLLCETLLEPGCQLESLWV-KSCSFTAACC-S------HFSSVLAQ 339 (461)
T ss_dssp HHHHHHH---HHHHCTTCCEEECTTC-CCHHHHHHHHHHHHTSTTCCCCEEEC-TTSCCBGGGH-H------HHHHHHHH
T ss_pred HHHHHHH---HHhhCCCcceEECCCC-CCchHHHHHHHHHhccCCccceeeEc-CCCCCchHHH-H------HHHHHHhh
Confidence 332 3455778888888776 3443322222221110 127888888 7776221100 0 00111234
Q ss_pred ecccceeecccCCCcceecCCCc----cccCCcccEEEeccCCccc-----cccCCCCCCCCccEEEeccc
Q 020456 228 FERMNYLTLDCLPSLTSFCLGNY----ALEFPSLEQVVVRQCPKMK-----IFSQGVLDTPMLNKVNVTEE 289 (326)
Q Consensus 228 l~~L~~L~l~~c~~l~~~~~~~~----~~~~~~L~~L~i~~c~~l~-----~l~~~~~~~~~L~~L~l~~c 289 (326)
+++|++|++.++ .++....... ....++|++|++++|. ++ .+|..+..+++|++|++++|
T Consensus 340 ~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~l~~N 408 (461)
T 1z7x_W 340 NRFLLELQISNN-RLEDAGVRELCQGLGQPGSVLRVLWLADCD-VSDSSCSSLAATLLANHSLRELDLSNN 408 (461)
T ss_dssp CSSCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CCHHHHHHHHHHHHHCCCCCEEECCSS
T ss_pred CCCccEEEccCC-ccccccHHHHHHHHcCCCCceEEEECCCCC-CChhhHHHHHHHHHhCCCccEEECCCC
Confidence 578888888887 3433211110 0025688899888874 43 46666556788899998887
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=98.85 E-value=1.3e-08 Score=98.65 Aligned_cols=169 Identities=18% Similarity=0.236 Sum_probs=112.2
Q ss_pred cCCCccEEEcccCCCcccccccCCCCCCCCCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccCcCcceeccccccc
Q 020456 47 GFCDIEYLQLSDFPCLKEIWHGQALPVSFFNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNCDSIEEVLHLEELN 126 (326)
Q Consensus 47 ~~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~ 126 (326)
.+++|+.|.+.++. +..+. . ...+++|+.|++++|. +..+.+ +..+++|+.|++++|. +..+..
T Consensus 41 ~L~~L~~L~l~~n~-i~~l~-~----l~~l~~L~~L~Ls~N~-l~~~~~---l~~l~~L~~L~Ls~N~-l~~l~~----- 104 (605)
T 1m9s_A 41 ELNSIDQIIANNSD-IKSVQ-G----IQYLPNVTKLFLNGNK-LTDIKP---LTNLKNLGWLFLDENK-IKDLSS----- 104 (605)
T ss_dssp HHTTCCCCBCTTCC-CCCCT-T----GGGCTTCCEEECTTSC-CCCCGG---GGGCTTCCEEECCSSC-CCCCTT-----
T ss_pred cCCCCCEEECcCCC-CCCCh-H----HccCCCCCEEEeeCCC-CCCChh---hccCCCCCEEECcCCC-CCCChh-----
Confidence 37788888888655 33322 1 2567899999999884 656544 6689999999998874 333211
Q ss_pred cccCcCCCCCCCccEEecCCCccccccccccccccccccccEEeEecCCCCCccCcchhhhccCCCCCCceEEecccCcc
Q 020456 127 ADKEHISPLFPKLSELRLIDLPKLKRFCNFTENIIEMLMLWSLTIENCPNMETFVSNSVVHVTTDNKKPQKLTLEENFLL 206 (326)
Q Consensus 127 ~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~L~~L~l~~C~~l~~~~~~~~~~~~~~~~~L~~L~i~~~c~~ 206 (326)
...+++|+.|+++++. +..++ .+..+++|+.|++++| .+..+ .....++ +|+.|++ .+|.
T Consensus 105 ------l~~l~~L~~L~Ls~N~-l~~l~----~l~~l~~L~~L~Ls~N-~l~~l---~~l~~l~---~L~~L~L-s~N~- 164 (605)
T 1m9s_A 105 ------LKDLKKLKSLSLEHNG-ISDIN----GLVHLPQLESLYLGNN-KITDI---TVLSRLT---KLDTLSL-EDNQ- 164 (605)
T ss_dssp ------STTCTTCCEEECTTSC-CCCCG----GGGGCTTCSEEECCSS-CCCCC---GGGGSCT---TCSEEEC-CSSC-
T ss_pred ------hccCCCCCEEEecCCC-CCCCc----cccCCCccCEEECCCC-ccCCc---hhhcccC---CCCEEEC-cCCc-
Confidence 1235689999998864 54443 4667889999999887 45554 2223445 8999998 7775
Q ss_pred cceeccccccccCccccceeeecccceeecccCCCcceecCCCccccCCcccEEEeccCCc
Q 020456 207 ADQVQPLFDEKVGEEVKGCIVFERMNYLTLDCLPSLTSFCLGNYALEFPSLEQVVVRQCPK 267 (326)
Q Consensus 207 l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~ 267 (326)
+..+.+ ...+++|+.|++.++ .+..++. . ..+++|+.|.+++++-
T Consensus 165 l~~~~~------------l~~l~~L~~L~Ls~N-~i~~l~~-l--~~l~~L~~L~L~~N~l 209 (605)
T 1m9s_A 165 ISDIVP------------LAGLTKLQNLYLSKN-HISDLRA-L--AGLKNLDVLELFSQEC 209 (605)
T ss_dssp CCCCGG------------GTTCTTCCEEECCSS-CCCBCGG-G--TTCTTCSEEECCSEEE
T ss_pred CCCchh------------hccCCCCCEEECcCC-CCCCChH-H--ccCCCCCEEEccCCcC
Confidence 333221 235688899998886 4555542 1 2678899998877653
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=98.85 E-value=2.4e-10 Score=106.94 Aligned_cols=59 Identities=15% Similarity=0.088 Sum_probs=33.8
Q ss_pred ecccceeecccCCCcce-----ecCCCccccCCcccEEEeccCCcccc-----ccCCCC-CCCCccEEEecccc
Q 020456 228 FERMNYLTLDCLPSLTS-----FCLGNYALEFPSLEQVVVRQCPKMKI-----FSQGVL-DTPMLNKVNVTEEE 290 (326)
Q Consensus 228 l~~L~~L~l~~c~~l~~-----~~~~~~~~~~~~L~~L~i~~c~~l~~-----l~~~~~-~~~~L~~L~l~~c~ 290 (326)
+++|++|++.+| .++. ++... ..+++|++|+++++. ++. +...+. ..++|++|++++|.
T Consensus 255 ~~~L~~L~L~~n-~l~~~~~~~l~~~l--~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~ 324 (461)
T 1z7x_W 255 SSRLRTLWIWEC-GITAKGCGDLCRVL--RAKESLKELSLAGNE-LGDEGARLLCETLLEPGCQLESLWVKSCS 324 (461)
T ss_dssp TCCCCEEECTTS-CCCHHHHHHHHHHH--HHCTTCCEEECTTCC-CHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred CCCceEEECcCC-CCCHHHHHHHHHHH--hhCCCcceEECCCCC-CchHHHHHHHHHhccCCccceeeEcCCCC
Confidence 466777777776 3443 22111 146788888887764 321 222221 23688888888884
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=98.83 E-value=6.2e-08 Score=83.20 Aligned_cols=157 Identities=16% Similarity=0.106 Sum_probs=102.9
Q ss_pred CCCccEEEcccCCCcccccccCCCCCCCCCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccCcCcceecccccccc
Q 020456 48 FCDIEYLQLSDFPCLKEIWHGQALPVSFFNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNCDSIEEVLHLEELNA 127 (326)
Q Consensus 48 ~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~ 127 (326)
.++|+.|++.++.- ..+.... ...+++|++|+++++ .++.+.+. .+..+++|++|+++++. +..++.
T Consensus 34 ~~~l~~L~L~~n~l-~~~~~~~---~~~l~~L~~L~L~~n-~l~~~~~~-~~~~l~~L~~L~L~~n~-l~~~~~------ 100 (251)
T 3m19_A 34 PADTEKLDLQSTGL-ATLSDAT---FRGLTKLTWLNLDYN-QLQTLSAG-VFDDLTELGTLGLANNQ-LASLPL------ 100 (251)
T ss_dssp CTTCCEEECTTSCC-CCCCTTT---TTTCTTCCEEECTTS-CCCCCCTT-TTTTCTTCCEEECTTSC-CCCCCT------
T ss_pred CCCCCEEEccCCCc-CccCHhH---hcCcccCCEEECCCC-cCCccCHh-HhccCCcCCEEECCCCc-ccccCh------
Confidence 46899999987653 3333222 256789999999998 46665553 36789999999999864 333321
Q ss_pred ccCcCCCCCCCccEEecCCCccccccccccccccccccccEEeEecCCCCCccCcchhhhccCCCCCCceEEecccCccc
Q 020456 128 DKEHISPLFPKLSELRLIDLPKLKRFCNFTENIIEMLMLWSLTIENCPNMETFVSNSVVHVTTDNKKPQKLTLEENFLLA 207 (326)
Q Consensus 128 ~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~L~~L~l~~C~~l~~~~~~~~~~~~~~~~~L~~L~i~~~c~~l 207 (326)
.....+++|+.|++++. +++.++.. .+..+++|+.|+++++ +++.+++.. ...++ +|++|++ .++. +
T Consensus 101 ---~~~~~l~~L~~L~L~~N-~l~~~~~~--~~~~l~~L~~L~Ls~N-~l~~~~~~~-~~~l~---~L~~L~L-~~N~-l 167 (251)
T 3m19_A 101 ---GVFDHLTQLDKLYLGGN-QLKSLPSG--VFDRLTKLKELRLNTN-QLQSIPAGA-FDKLT---NLQTLSL-STNQ-L 167 (251)
T ss_dssp ---TTTTTCTTCCEEECCSS-CCCCCCTT--TTTTCTTCCEEECCSS-CCCCCCTTT-TTTCT---TCCEEEC-CSSC-C
T ss_pred ---hHhcccCCCCEEEcCCC-cCCCcChh--HhccCCcccEEECcCC-cCCccCHHH-cCcCc---CCCEEEC-CCCc-C
Confidence 11124579999999886 56666542 3467899999999886 677664322 33445 8999999 7764 4
Q ss_pred ceeccccccccCccccceeeecccceeecccCC
Q 020456 208 DQVQPLFDEKVGEEVKGCIVFERMNYLTLDCLP 240 (326)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~ 240 (326)
+.+.+.. ...+++|++|++.+.+
T Consensus 168 ~~~~~~~----------~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 168 QSVPHGA----------FDRLGKLQTITLFGNQ 190 (251)
T ss_dssp SCCCTTT----------TTTCTTCCEEECCSCC
T ss_pred CccCHHH----------HhCCCCCCEEEeeCCc
Confidence 3332211 3345788888888754
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=98.80 E-value=1.8e-09 Score=98.16 Aligned_cols=252 Identities=13% Similarity=0.037 Sum_probs=143.1
Q ss_pred CCCCeeEEEecccCCcccceecCCCchhhhhhhhccccCC-CccEEEcccCCCcccccccCC-CCCCCCCCccEEEEecC
Q 020456 10 STPKLHEVQVTEKNEDELRHWEGNLNSTIQKCYEEMIGFC-DIEYLQLSDFPCLKEIWHGQA-LPVSFFNNLEELEVDDC 87 (326)
Q Consensus 10 ~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~l~~~~~~~~-l~~~~~~~L~~L~l~~c 87 (326)
..++|++|++.+.... +..... +.+.+..++ +|++|+++++.--...+.... .....+++|++|++++|
T Consensus 20 ~~~~L~~L~Ls~n~l~------~~~~~~---l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n 90 (362)
T 3goz_A 20 IPHGVTSLDLSLNNLY------SISTVE---LIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGN 90 (362)
T ss_dssp SCTTCCEEECTTSCGG------GSCHHH---HHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSS
T ss_pred CCCCceEEEccCCCCC------hHHHHH---HHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCC
Confidence 4456999999932221 111111 112234477 899999998753222121110 00012489999999999
Q ss_pred CCCCcCCchhH---HhhC-CCCCEEEEccCcCcceeccccccccccCcCCCCCCCccEEecCCCcccc-----ccccccc
Q 020456 88 TNMSSAIPANL---LRCL-NNLRCLEVRNCDSIEEVLHLEELNADKEHISPLFPKLSELRLIDLPKLK-----RFCNFTE 158 (326)
Q Consensus 88 ~~l~~~~~~~~---~~~l-~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~-----~~~~~~~ 158 (326)
. ++...+..+ +..+ ++|++|++++|. +...... .+. ..+.....+|++|+++++. ++ .++.
T Consensus 91 ~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~-~l~---~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~--- 160 (362)
T 3goz_A 91 F-LSYKSSDELVKTLAAIPFTITVLDLGWND-FSSKSSS-EFK---QAFSNLPASITSLNLRGND-LGIKSSDELIQ--- 160 (362)
T ss_dssp C-GGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHH-HHH---HHHTTSCTTCCEEECTTSC-GGGSCHHHHHH---
T ss_pred c-CChHHHHHHHHHHHhCCCCccEEECcCCc-CCcHHHH-HHH---HHHHhCCCceeEEEccCCc-CCHHHHHHHHH---
Confidence 5 665554432 3344 899999999876 3322110 000 0000112489999999874 33 2221
Q ss_pred cccccc-cccEEeEecCCCCCccCcchhhhccCCC-CCCceEEecccCcccceeccccccccCccccceee-ecccceee
Q 020456 159 NIIEML-MLWSLTIENCPNMETFVSNSVVHVTTDN-KKPQKLTLEENFLLADQVQPLFDEKVGEEVKGCIV-FERMNYLT 235 (326)
Q Consensus 159 ~~~~~~-~L~~L~l~~C~~l~~~~~~~~~~~~~~~-~~L~~L~i~~~c~~l~~~~~~~~~~~~~~~~~~~~-l~~L~~L~ 235 (326)
.+..++ +|++|++++| .++...+..+...+... ++|++|++ .+|. +...... ........ .++|++|+
T Consensus 161 ~l~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~L-s~N~-i~~~~~~------~l~~~l~~~~~~L~~L~ 231 (362)
T 3goz_A 161 ILAAIPANVNSLNLRGN-NLASKNCAELAKFLASIPASVTSLDL-SANL-LGLKSYA------ELAYIFSSIPNHVVSLN 231 (362)
T ss_dssp HHHTSCTTCCEEECTTS-CGGGSCHHHHHHHHHTSCTTCCEEEC-TTSC-GGGSCHH------HHHHHHHHSCTTCCEEE
T ss_pred HHhcCCccccEeeecCC-CCchhhHHHHHHHHHhCCCCCCEEEC-CCCC-CChhHHH------HHHHHHhcCCCCceEEE
Confidence 233454 9999999997 56665444333322122 18999999 8876 3321000 00000112 25899999
Q ss_pred cccCCCcceecCC---CccccCCcccEEEeccCC-------ccccccCCCCCCCCccEEEecccc
Q 020456 236 LDCLPSLTSFCLG---NYALEFPSLEQVVVRQCP-------KMKIFSQGVLDTPMLNKVNVTEEE 290 (326)
Q Consensus 236 l~~c~~l~~~~~~---~~~~~~~~L~~L~i~~c~-------~l~~l~~~~~~~~~L~~L~l~~c~ 290 (326)
+.++. ++..+.. .....+++|++|++++|. .+..++..+..+++|++|+++++.
T Consensus 232 Ls~N~-l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 232 LCLNC-LHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp CCSSC-CCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred CcCCC-CCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence 99964 4433221 011267899999999886 244466666678899999998874
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=98.79 E-value=2.9e-08 Score=96.23 Aligned_cols=168 Identities=17% Similarity=0.199 Sum_probs=113.3
Q ss_pred CCCCeeEEEecccCCcccceecCCCchhhhhhhhccccCCCccEEEcccCCCcccccccCCCCCCCCCCccEEEEecCCC
Q 020456 10 STPKLHEVQVTEKNEDELRHWEGNLNSTIQKCYEEMIGFCDIEYLQLSDFPCLKEIWHGQALPVSFFNNLEELEVDDCTN 89 (326)
Q Consensus 10 ~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~L~~L~l~~c~~ 89 (326)
.+++|+.|.+.+.... .+ +.+..+++|+.|+++++. +..+.. ...+++|+.|++++|.
T Consensus 41 ~L~~L~~L~l~~n~i~---~l------------~~l~~l~~L~~L~Ls~N~-l~~~~~-----l~~l~~L~~L~Ls~N~- 98 (605)
T 1m9s_A 41 ELNSIDQIIANNSDIK---SV------------QGIQYLPNVTKLFLNGNK-LTDIKP-----LTNLKNLGWLFLDENK- 98 (605)
T ss_dssp HHTTCCCCBCTTCCCC---CC------------TTGGGCTTCCEEECTTSC-CCCCGG-----GGGCTTCCEEECCSSC-
T ss_pred cCCCCCEEECcCCCCC---CC------------hHHccCCCCCEEEeeCCC-CCCChh-----hccCCCCCEEECcCCC-
Confidence 4667777777732222 11 124568999999998765 333222 2578999999999984
Q ss_pred CCcCCchhHHhhCCCCCEEEEccCcCcceeccccccccccCcCCCCCCCccEEecCCCccccccccccccccccccccEE
Q 020456 90 MSSAIPANLLRCLNNLRCLEVRNCDSIEEVLHLEELNADKEHISPLFPKLSELRLIDLPKLKRFCNFTENIIEMLMLWSL 169 (326)
Q Consensus 90 l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~L~~L 169 (326)
+..+. . +..+++|+.|++++|. +..+.. ...+++|+.|+|+++. +..++ .+..+++|+.|
T Consensus 99 l~~l~-~--l~~l~~L~~L~Ls~N~-l~~l~~-----------l~~l~~L~~L~Ls~N~-l~~l~----~l~~l~~L~~L 158 (605)
T 1m9s_A 99 IKDLS-S--LKDLKKLKSLSLEHNG-ISDING-----------LVHLPQLESLYLGNNK-ITDIT----VLSRLTKLDTL 158 (605)
T ss_dssp CCCCT-T--STTCTTCCEEECTTSC-CCCCGG-----------GGGCTTCSEEECCSSC-CCCCG----GGGSCTTCSEE
T ss_pred CCCCh-h--hccCCCCCEEEecCCC-CCCCcc-----------ccCCCccCEEECCCCc-cCCch----hhcccCCCCEE
Confidence 65543 2 6789999999999875 333311 1135799999998874 55552 56778999999
Q ss_pred eEecCCCCCccCcchhhhccCCCCCCceEEecccCcccceeccccccccCccccceeeecccceeecccCC
Q 020456 170 TIENCPNMETFVSNSVVHVTTDNKKPQKLTLEENFLLADQVQPLFDEKVGEEVKGCIVFERMNYLTLDCLP 240 (326)
Q Consensus 170 ~l~~C~~l~~~~~~~~~~~~~~~~~L~~L~i~~~c~~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~ 240 (326)
++++| .+..+.+ ...++ +|+.|++ .+|. +..+.. +..+++|+.|++.+++
T Consensus 159 ~Ls~N-~l~~~~~---l~~l~---~L~~L~L-s~N~-i~~l~~------------l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 159 SLEDN-QISDIVP---LAGLT---KLQNLYL-SKNH-ISDLRA------------LAGLKNLDVLELFSQE 208 (605)
T ss_dssp ECCSS-CCCCCGG---GTTCT---TCCEEEC-CSSC-CCBCGG------------GTTCTTCSEEECCSEE
T ss_pred ECcCC-cCCCchh---hccCC---CCCEEEC-cCCC-CCCChH------------HccCCCCCEEEccCCc
Confidence 99987 4665533 33455 8999999 7774 443311 3356889999998865
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=98.74 E-value=2.6e-07 Score=89.40 Aligned_cols=114 Identities=16% Similarity=0.105 Sum_probs=69.0
Q ss_pred ccccccccEEeEecCCCCCccCcchhhhccCCCCCCceEEecccCcccceeccccccccCccccceeeecccceeecccC
Q 020456 160 IIEMLMLWSLTIENCPNMETFVSNSVVHVTTDNKKPQKLTLEENFLLADQVQPLFDEKVGEEVKGCIVFERMNYLTLDCL 239 (326)
Q Consensus 160 ~~~~~~L~~L~l~~C~~l~~~~~~~~~~~~~~~~~L~~L~i~~~c~~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c 239 (326)
+..+++|+.|+++++.......+. ....++ +|++|++ .+|. ++.+.+.. ...+++|+.|++.++
T Consensus 465 ~~~~~~L~~L~Ls~N~~~~~~~~~-~~~~l~---~L~~L~L-s~N~-L~~l~~~~----------f~~l~~L~~L~Ls~N 528 (635)
T 4g8a_A 465 FNGLSSLEVLKMAGNSFQENFLPD-IFTELR---NLTFLDL-SQCQ-LEQLSPTA----------FNSLSSLQVLNMSHN 528 (635)
T ss_dssp TTTCTTCCEEECTTCEEGGGEECS-CCTTCT---TCCEEEC-TTSC-CCEECTTT----------TTTCTTCCEEECTTS
T ss_pred cccchhhhhhhhhhcccccccCch-hhhhcc---ccCEEEC-CCCc-cCCcChHH----------HcCCCCCCEEECCCC
Confidence 345567777777766544443222 222344 7888888 7764 55443321 335678888888885
Q ss_pred CCcceecCCCccccCCcccEEEeccCCccccccCCCCCC-CCccEEEeccccC
Q 020456 240 PSLTSFCLGNYALEFPSLEQVVVRQCPKMKIFSQGVLDT-PMLNKVNVTEEEK 291 (326)
Q Consensus 240 ~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~-~~L~~L~l~~c~~ 291 (326)
.++.++..... .+++|++|+++++.--...|..+..+ ++|++|++++++=
T Consensus 529 -~l~~l~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~ 579 (635)
T 4g8a_A 529 -NFFSLDTFPYK-CLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 579 (635)
T ss_dssp -CCCBCCCGGGT-TCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCB
T ss_pred -cCCCCChhHHh-CCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCC
Confidence 56666543332 67888888887764333334455455 5789999887643
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=98.73 E-value=2e-07 Score=89.54 Aligned_cols=175 Identities=14% Similarity=0.107 Sum_probs=119.3
Q ss_pred CCccEEEcccCCCcccccccCCCCCCCCCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccCcCcceeccccccccc
Q 020456 49 CDIEYLQLSDFPCLKEIWHGQALPVSFFNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNCDSIEEVLHLEELNAD 128 (326)
Q Consensus 49 ~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~ 128 (326)
.+|+.|++.++. +..++. ..+++|++|+++++ +++.++ ..+++|++|+++++. +..++.
T Consensus 59 ~~L~~L~Ls~n~-L~~lp~------~l~~~L~~L~Ls~N-~l~~ip-----~~l~~L~~L~Ls~N~-l~~ip~------- 117 (571)
T 3cvr_A 59 NQFSELQLNRLN-LSSLPD------NLPPQITVLEITQN-ALISLP-----ELPASLEYLDACDNR-LSTLPE------- 117 (571)
T ss_dssp TTCSEEECCSSC-CSCCCS------CCCTTCSEEECCSS-CCSCCC-----CCCTTCCEEECCSSC-CSCCCC-------
T ss_pred CCccEEEeCCCC-CCccCH------hHcCCCCEEECcCC-CCcccc-----cccCCCCEEEccCCC-CCCcch-------
Confidence 389999998764 454332 33588999999998 466554 247899999999874 443321
Q ss_pred cCcCCCCCCCccEEecCCCccccccccccccccccccccEEeEecCCCCCccCcchhhhccCCCCCCceEEecccCcccc
Q 020456 129 KEHISPLFPKLSELRLIDLPKLKRFCNFTENIIEMLMLWSLTIENCPNMETFVSNSVVHVTTDNKKPQKLTLEENFLLAD 208 (326)
Q Consensus 129 ~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~L~~L~l~~C~~l~~~~~~~~~~~~~~~~~L~~L~i~~~c~~l~ 208 (326)
...+|+.|+++++ .++.++. .+++|+.|+++++ .++.++. .++ +|++|++ .++. ++
T Consensus 118 ------l~~~L~~L~Ls~N-~l~~lp~------~l~~L~~L~Ls~N-~l~~lp~-----~l~---~L~~L~L-s~N~-L~ 173 (571)
T 3cvr_A 118 ------LPASLKHLDVDNN-QLTMLPE------LPALLEYINADNN-QLTMLPE-----LPT---SLEVLSV-RNNQ-LT 173 (571)
T ss_dssp ------CCTTCCEEECCSS-CCSCCCC------CCTTCCEEECCSS-CCSCCCC-----CCT---TCCEEEC-CSSC-CS
T ss_pred ------hhcCCCEEECCCC-cCCCCCC------cCccccEEeCCCC-ccCcCCC-----cCC---CcCEEEC-CCCC-CC
Confidence 1128999999885 3555553 4788999999886 4665532 234 8999998 7765 33
Q ss_pred eeccccccccCccccceeeecccceeecccCCCcceecCCCccccCCcc-------cEEEeccCCccccccCCCCCCCCc
Q 020456 209 QVQPLFDEKVGEEVKGCIVFERMNYLTLDCLPSLTSFCLGNYALEFPSL-------EQVVVRQCPKMKIFSQGVLDTPML 281 (326)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L-------~~L~i~~c~~l~~l~~~~~~~~~L 281 (326)
.+.. .. ++|+.|++.++ .++.++. .. . +| +.|+++++ .++.+|..+..+++|
T Consensus 174 ~lp~------------l~--~~L~~L~Ls~N-~L~~lp~-~~--~--~L~~~~~~L~~L~Ls~N-~l~~lp~~l~~l~~L 232 (571)
T 3cvr_A 174 FLPE------------LP--ESLEALDVSTN-LLESLPA-VP--V--RNHHSEETEIFFRCREN-RITHIPENILSLDPT 232 (571)
T ss_dssp CCCC------------CC--TTCCEEECCSS-CCSSCCC-CC------------CCEEEECCSS-CCCCCCGGGGGSCTT
T ss_pred Ccch------------hh--CCCCEEECcCC-CCCchhh-HH--H--hhhcccccceEEecCCC-cceecCHHHhcCCCC
Confidence 3321 11 78889998885 5666665 22 1 55 88988765 667788877778999
Q ss_pred cEEEeccc
Q 020456 282 NKVNVTEE 289 (326)
Q Consensus 282 ~~L~l~~c 289 (326)
++|+++++
T Consensus 233 ~~L~L~~N 240 (571)
T 3cvr_A 233 CTIILEDN 240 (571)
T ss_dssp EEEECCSS
T ss_pred CEEEeeCC
Confidence 99999887
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=1.1e-07 Score=92.13 Aligned_cols=59 Identities=10% Similarity=0.151 Sum_probs=28.6
Q ss_pred ecccceeecccCCCcceecCCCccccCCcccEEEeccCCccccccC-CCCCCCCccEEEeccc
Q 020456 228 FERMNYLTLDCLPSLTSFCLGNYALEFPSLEQVVVRQCPKMKIFSQ-GVLDTPMLNKVNVTEE 289 (326)
Q Consensus 228 l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~-~~~~~~~L~~L~l~~c 289 (326)
+++|+.|++.++ .++.++..... .+++|++|+++++ .++.++. .+..+++|++|+++++
T Consensus 493 l~~L~~L~Ls~N-~L~~l~~~~f~-~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~Ls~N 552 (635)
T 4g8a_A 493 LRNLTFLDLSQC-QLEQLSPTAFN-SLSSLQVLNMSHN-NFFSLDTFPYKCLNSLQVLDYSLN 552 (635)
T ss_dssp CTTCCEEECTTS-CCCEECTTTTT-TCTTCCEEECTTS-CCCBCCCGGGTTCTTCCEEECTTS
T ss_pred ccccCEEECCCC-ccCCcChHHHc-CCCCCCEEECCCC-cCCCCChhHHhCCCCCCEEECCCC
Confidence 455555555554 34444332221 4555666655544 3443333 2334555666665554
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=98.67 E-value=5.3e-08 Score=78.19 Aligned_cols=61 Identities=13% Similarity=0.141 Sum_probs=32.8
Q ss_pred ecccceeecccCCCcceecCCCccccCCcccEEEeccCCccccccC----CCCCCCCccEEEecccc
Q 020456 228 FERMNYLTLDCLPSLTSFCLGNYALEFPSLEQVVVRQCPKMKIFSQ----GVLDTPMLNKVNVTEEE 290 (326)
Q Consensus 228 l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~----~~~~~~~L~~L~l~~c~ 290 (326)
+++|++|++.++ .++.++.......+++|++|++++++ +..+|. .+..+++|++|++++|.
T Consensus 94 l~~L~~L~Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 94 LPNLTHLNLSGN-KLKDISTLEPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp CTTCCEEECBSS-SCCSSGGGGGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred CCCCCEEeccCC-ccCcchhHHHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCCC
Confidence 455666666654 34443321111156677777776653 333443 34456777777777764
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=98.62 E-value=1.8e-07 Score=77.83 Aligned_cols=14 Identities=14% Similarity=0.136 Sum_probs=7.2
Q ss_pred cccccccEEeEecC
Q 020456 161 IEMLMLWSLTIENC 174 (326)
Q Consensus 161 ~~~~~L~~L~l~~C 174 (326)
..+++|++|+++++
T Consensus 97 ~~l~~L~~L~L~~N 110 (208)
T 2o6s_A 97 DKLTQLKELALNTN 110 (208)
T ss_dssp TTCTTCCEEECCSS
T ss_pred cCccCCCEEEcCCC
Confidence 34455555555543
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=98.60 E-value=4.2e-07 Score=72.83 Aligned_cols=133 Identities=23% Similarity=0.201 Sum_probs=64.1
Q ss_pred CCCccEEEcccCCCc-ccccccCCCCCCCCCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccCcCcceeccccccc
Q 020456 48 FCDIEYLQLSDFPCL-KEIWHGQALPVSFFNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNCDSIEEVLHLEELN 126 (326)
Q Consensus 48 ~~~L~~L~l~~~~~l-~~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~ 126 (326)
.++|++|++.++.-. ..++... ..+++|++|++++|. ++.+ .. +..+++|++|++++|.....++...
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~----~~l~~L~~L~l~~n~-l~~~-~~--~~~l~~L~~L~Ls~N~l~~~~~~~~--- 91 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLT----AEFVNLEFLSLINVG-LISV-SN--LPKLPKLKKLELSENRIFGGLDMLA--- 91 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCC----GGGGGCCEEEEESSC-CCCC-SS--CCCCSSCCEEEEESCCCCSCCCHHH---
T ss_pred cccCCEEECCCCCCChhhHHHHH----HhCCCCCEEeCcCCC-CCCh-hh--hccCCCCCEEECcCCcCchHHHHHH---
Confidence 455666666655422 1222111 345666666666654 4443 11 4456666666666554211111000
Q ss_pred cccCcCCCCCCCccEEecCCCccccccccccccccccccccEEeEecCCCCCccCc--chhhhccCCCCCCceEEecccC
Q 020456 127 ADKEHISPLFPKLSELRLIDLPKLKRFCNFTENIIEMLMLWSLTIENCPNMETFVS--NSVVHVTTDNKKPQKLTLEENF 204 (326)
Q Consensus 127 ~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~L~~L~l~~C~~l~~~~~--~~~~~~~~~~~~L~~L~i~~~c 204 (326)
..+++|+.|+++++ .++.++... .+..+++|+.|+++++ .+...++ ......++ +|++|++ .+|
T Consensus 92 -------~~l~~L~~L~Ls~N-~l~~~~~~~-~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~---~L~~L~l-~~n 157 (168)
T 2ell_A 92 -------EKLPNLTHLNLSGN-KLKDISTLE-PLKKLECLKSLDLFNC-EVTNLNDYRESVFKLLP---QLTYLDG-YDR 157 (168)
T ss_dssp -------HHCTTCCEEECBSS-SCCSSGGGG-GGSSCSCCCEEECCSS-GGGTSTTHHHHHHTTCS---SCCEETT-EET
T ss_pred -------hhCCCCCEEeccCC-ccCcchhHH-HHhcCCCCCEEEeeCC-cCcchHHHHHHHHHhCc---cCcEecC-CCC
Confidence 01346666666655 344433111 4455677777777665 3444322 12233344 6777777 666
Q ss_pred c
Q 020456 205 L 205 (326)
Q Consensus 205 ~ 205 (326)
.
T Consensus 158 ~ 158 (168)
T 2ell_A 158 E 158 (168)
T ss_dssp T
T ss_pred C
Confidence 5
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=98.59 E-value=2.4e-07 Score=80.23 Aligned_cols=145 Identities=21% Similarity=0.268 Sum_probs=81.1
Q ss_pred cCCCccEEEcccCCCcccccccCCCCCCCCCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccCcCcceeccccccc
Q 020456 47 GFCDIEYLQLSDFPCLKEIWHGQALPVSFFNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNCDSIEEVLHLEELN 126 (326)
Q Consensus 47 ~~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~ 126 (326)
.+++|++|++.++. +..+. .. ..+++|++|+++++ +++.+.+ +..+++|++|+++++. +..+...
T Consensus 39 ~l~~L~~L~l~~n~-i~~l~-~l----~~l~~L~~L~L~~N-~i~~~~~---l~~l~~L~~L~L~~N~-l~~l~~~---- 103 (263)
T 1xeu_A 39 ELSGVQNFNGDNSN-IQSLA-GM----QFFTNLKELHLSHN-QISDLSP---LKDLTKLEELSVNRNR-LKNLNGI---- 103 (263)
T ss_dssp HHTTCSEEECTTSC-CCCCT-TG----GGCTTCCEEECCSS-CCCCCGG---GTTCSSCCEEECCSSC-CSCCTTC----
T ss_pred hcCcCcEEECcCCC-cccch-HH----hhCCCCCEEECCCC-ccCCChh---hccCCCCCEEECCCCc-cCCcCcc----
Confidence 36777777777653 34322 22 45677777777776 3555443 5567777777777753 3322110
Q ss_pred cccCcCCCCCCCccEEecCCCccccccccccccccccccccEEeEecCCCCCccCcchhhhccCCCCCCceEEecccCcc
Q 020456 127 ADKEHISPLFPKLSELRLIDLPKLKRFCNFTENIIEMLMLWSLTIENCPNMETFVSNSVVHVTTDNKKPQKLTLEENFLL 206 (326)
Q Consensus 127 ~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~L~~L~l~~C~~l~~~~~~~~~~~~~~~~~L~~L~i~~~c~~ 206 (326)
..++|+.|+++++ +++.++ .+..+++|+.|+++++ .++.+. . ...++ +|+.|++ .++.
T Consensus 104 --------~~~~L~~L~L~~N-~l~~~~----~l~~l~~L~~L~Ls~N-~i~~~~--~-l~~l~---~L~~L~L-~~N~- 161 (263)
T 1xeu_A 104 --------PSACLSRLFLDNN-ELRDTD----SLIHLKNLEILSIRNN-KLKSIV--M-LGFLS---KLEVLDL-HGNE- 161 (263)
T ss_dssp --------CCSSCCEEECCSS-CCSBSG----GGTTCTTCCEEECTTS-CCCBCG--G-GGGCT---TCCEEEC-TTSC-
T ss_pred --------ccCcccEEEccCC-ccCCCh----hhcCcccccEEECCCC-cCCCCh--H-HccCC---CCCEEEC-CCCc-
Confidence 0147777777765 344443 3556677777777765 355542 1 22344 7777777 6554
Q ss_pred cceeccccccccCccccceeeecccceeecccCC
Q 020456 207 ADQVQPLFDEKVGEEVKGCIVFERMNYLTLDCLP 240 (326)
Q Consensus 207 l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~ 240 (326)
++.+. . ...+++|+.|++.+.+
T Consensus 162 i~~~~-~-----------l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 162 ITNTG-G-----------LTRLKKVNWIDLTGQK 183 (263)
T ss_dssp CCBCT-T-----------STTCCCCCEEEEEEEE
T ss_pred CcchH-H-----------hccCCCCCEEeCCCCc
Confidence 22221 0 2245667777766643
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=98.50 E-value=1.1e-06 Score=75.96 Aligned_cols=166 Identities=15% Similarity=0.172 Sum_probs=110.8
Q ss_pred CCCccEEEcccCCCcccccccCCCCCCCCCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccCcCcceecccccccc
Q 020456 48 FCDIEYLQLSDFPCLKEIWHGQALPVSFFNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNCDSIEEVLHLEELNA 127 (326)
Q Consensus 48 ~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~ 127 (326)
+.+++.+.+.+.. +..+. . ...+++|++|++++| .++.+. . +..+++|++|+++++. +..+..
T Consensus 18 l~~l~~l~l~~~~-i~~~~-~----~~~l~~L~~L~l~~n-~i~~l~-~--l~~l~~L~~L~L~~N~-i~~~~~------ 80 (263)
T 1xeu_A 18 LANAVKQNLGKQS-VTDLV-S----QKELSGVQNFNGDNS-NIQSLA-G--MQFFTNLKELHLSHNQ-ISDLSP------ 80 (263)
T ss_dssp HHHHHHHHHTCSC-TTSEE-C----HHHHTTCSEEECTTS-CCCCCT-T--GGGCTTCCEEECCSSC-CCCCGG------
T ss_pred HHHHHHHHhcCCC-ccccc-c----hhhcCcCcEEECcCC-Ccccch-H--HhhCCCCCEEECCCCc-cCCChh------
Confidence 5556666666432 34333 1 146799999999998 466654 2 6789999999999874 444432
Q ss_pred ccCcCCCCCCCccEEecCCCccccccccccccccccccccEEeEecCCCCCccCcchhhhccCCCCCCceEEecccCccc
Q 020456 128 DKEHISPLFPKLSELRLIDLPKLKRFCNFTENIIEMLMLWSLTIENCPNMETFVSNSVVHVTTDNKKPQKLTLEENFLLA 207 (326)
Q Consensus 128 ~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~L~~L~l~~C~~l~~~~~~~~~~~~~~~~~L~~L~i~~~c~~l 207 (326)
...+++|+.|+++++ +++.++. +.. ++|+.|++++| .+..+. . ...++ +|+.|++ .++. +
T Consensus 81 -----l~~l~~L~~L~L~~N-~l~~l~~----~~~-~~L~~L~L~~N-~l~~~~--~-l~~l~---~L~~L~L-s~N~-i 140 (263)
T 1xeu_A 81 -----LKDLTKLEELSVNRN-RLKNLNG----IPS-ACLSRLFLDNN-ELRDTD--S-LIHLK---NLEILSI-RNNK-L 140 (263)
T ss_dssp -----GTTCSSCCEEECCSS-CCSCCTT----CCC-SSCCEEECCSS-CCSBSG--G-GTTCT---TCCEEEC-TTSC-C
T ss_pred -----hccCCCCCEEECCCC-ccCCcCc----ccc-CcccEEEccCC-ccCCCh--h-hcCcc---cccEEEC-CCCc-C
Confidence 113579999999986 4666654 222 89999999987 566652 2 22445 8999999 7765 4
Q ss_pred ceeccccccccCccccceeeecccceeecccCCCcceecCCCccccCCcccEEEeccCC
Q 020456 208 DQVQPLFDEKVGEEVKGCIVFERMNYLTLDCLPSLTSFCLGNYALEFPSLEQVVVRQCP 266 (326)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~ 266 (326)
+.+.. ...+++|+.|++.++. ++.+. .. ..+++|+.|++++++
T Consensus 141 ~~~~~------------l~~l~~L~~L~L~~N~-i~~~~-~l--~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 141 KSIVM------------LGFLSKLEVLDLHGNE-ITNTG-GL--TRLKKVNWIDLTGQK 183 (263)
T ss_dssp CBCGG------------GGGCTTCCEEECTTSC-CCBCT-TS--TTCCCCCEEEEEEEE
T ss_pred CCChH------------HccCCCCCEEECCCCc-CcchH-Hh--ccCCCCCEEeCCCCc
Confidence 44321 3356889999999864 44442 12 267899999998764
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=98.48 E-value=5.8e-08 Score=88.07 Aligned_cols=222 Identities=11% Similarity=-0.042 Sum_probs=127.3
Q ss_pred CCCccEEEcccCCCcccccccC-CCCCCCCC-CccEEEEecCCCCCcCCchhHHhhC-----CCCCEEEEccCcCcceec
Q 020456 48 FCDIEYLQLSDFPCLKEIWHGQ-ALPVSFFN-NLEELEVDDCTNMSSAIPANLLRCL-----NNLRCLEVRNCDSIEEVL 120 (326)
Q Consensus 48 ~~~L~~L~l~~~~~l~~~~~~~-~l~~~~~~-~L~~L~l~~c~~l~~~~~~~~~~~l-----~~L~~L~l~~c~~l~~l~ 120 (326)
.++|++|+++++. +..+.... .-....++ +|++|++++| .++...+.. +..+ ++|++|++++|. +....
T Consensus 21 ~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~-l~~~l~~~~~~L~~L~Ls~n~-l~~~~ 96 (362)
T 3goz_A 21 PHGVTSLDLSLNN-LYSISTVELIQAFANTPASVTSLNLSGN-SLGFKNSDE-LVQILAAIPANVTSLNLSGNF-LSYKS 96 (362)
T ss_dssp CTTCCEEECTTSC-GGGSCHHHHHHHHHTCCTTCCEEECCSS-CGGGSCHHH-HHHHHHTSCTTCCEEECCSSC-GGGSC
T ss_pred CCCceEEEccCCC-CChHHHHHHHHHHHhCCCceeEEECcCC-CCCHHHHHH-HHHHHhccCCCccEEECcCCc-CChHH
Confidence 4569999999876 44322200 00013456 8999999999 466665543 3333 999999999986 33221
Q ss_pred cccccccccCcCCCCCCCccEEecCCCcccccccccc--ccccc-cccccEEeEecCCCCCccCcchhhhccCCC-CCCc
Q 020456 121 HLEELNADKEHISPLFPKLSELRLIDLPKLKRFCNFT--ENIIE-MLMLWSLTIENCPNMETFVSNSVVHVTTDN-KKPQ 196 (326)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~--~~~~~-~~~L~~L~l~~C~~l~~~~~~~~~~~~~~~-~~L~ 196 (326)
.. .... .+....++|+.|+++++. ++...... ..+.. .++|++|++++| .+.......+...+... ++|+
T Consensus 97 ~~-~l~~---~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~ 170 (362)
T 3goz_A 97 SD-ELVK---TLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGN-DLGIKSSDELIQILAAIPANVN 170 (362)
T ss_dssp HH-HHHH---HHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTS-CGGGSCHHHHHHHHHTSCTTCC
T ss_pred HH-HHHH---HHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCC-cCCHHHHHHHHHHHhcCCcccc
Confidence 10 0000 000112599999999876 44332210 01223 269999999987 55544333322221111 1899
Q ss_pred eEEecccCcccceeccccccccCccccceeee-cccceeecccCCCcce-----ecCCCccccCCcccEEEeccCCcccc
Q 020456 197 KLTLEENFLLADQVQPLFDEKVGEEVKGCIVF-ERMNYLTLDCLPSLTS-----FCLGNYALEFPSLEQVVVRQCPKMKI 270 (326)
Q Consensus 197 ~L~i~~~c~~l~~~~~~~~~~~~~~~~~~~~l-~~L~~L~l~~c~~l~~-----~~~~~~~~~~~~L~~L~i~~c~~l~~ 270 (326)
+|++ .+|. ++...... .......+ ++|++|++.++. ++. ++.... ...++|++|+++++. ++.
T Consensus 171 ~L~L-s~n~-l~~~~~~~------l~~~l~~~~~~L~~L~Ls~N~-i~~~~~~~l~~~l~-~~~~~L~~L~Ls~N~-l~~ 239 (362)
T 3goz_A 171 SLNL-RGNN-LASKNCAE------LAKFLASIPASVTSLDLSANL-LGLKSYAELAYIFS-SIPNHVVSLNLCLNC-LHG 239 (362)
T ss_dssp EEEC-TTSC-GGGSCHHH------HHHHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHHH-HSCTTCCEEECCSSC-CCC
T ss_pred Eeee-cCCC-CchhhHHH------HHHHHHhCCCCCCEEECCCCC-CChhHHHHHHHHHh-cCCCCceEEECcCCC-CCc
Confidence 9999 8875 32221110 01112233 489999999975 443 221111 013599999998874 332
Q ss_pred -----ccCCCCCCCCccEEEecccc
Q 020456 271 -----FSQGVLDTPMLNKVNVTEEE 290 (326)
Q Consensus 271 -----l~~~~~~~~~L~~L~l~~c~ 290 (326)
+......+++|++|++++|.
T Consensus 240 ~~~~~l~~~~~~l~~L~~L~L~~n~ 264 (362)
T 3goz_A 240 PSLENLKLLKDSLKHLQTVYLDYDI 264 (362)
T ss_dssp CCHHHHHHTTTTTTTCSEEEEEHHH
T ss_pred HHHHHHHHHHhcCCCccEEEeccCC
Confidence 23344568899999999985
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=98.47 E-value=2.5e-07 Score=72.65 Aligned_cols=112 Identities=23% Similarity=0.249 Sum_probs=53.0
Q ss_pred CCCccEEEcccCCCc-ccccccCCCCCCCCCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccCcCcceeccccccc
Q 020456 48 FCDIEYLQLSDFPCL-KEIWHGQALPVSFFNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNCDSIEEVLHLEELN 126 (326)
Q Consensus 48 ~~~L~~L~l~~~~~l-~~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~ 126 (326)
.++|+.|++.++.-. ..++... ..+++|++|++++| .++.. . .++.+++|++|+++++.--..++...
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~----~~l~~L~~L~l~~n-~l~~~-~--~~~~l~~L~~L~Ls~n~i~~~~~~~~--- 84 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLT----DEFEELEFLSTINV-GLTSI-A--NLPKLNKLKKLELSDNRVSGGLEVLA--- 84 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCC----TTCTTCCEEECTTS-CCCCC-T--TCCCCTTCCEEECCSSCCCSCTHHHH---
T ss_pred CccCeEEEccCCcCChhHHHHHH----hhcCCCcEEECcCC-CCCCc-h--hhhcCCCCCEEECCCCcccchHHHHh---
Confidence 466677777665432 1322211 45566666666666 34444 1 14556666666666653211111000
Q ss_pred cccCcCCCCCCCccEEecCCCccccccccccccccccccccEEeEecCCCCCcc
Q 020456 127 ADKEHISPLFPKLSELRLIDLPKLKRFCNFTENIIEMLMLWSLTIENCPNMETF 180 (326)
Q Consensus 127 ~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~L~~L~l~~C~~l~~~ 180 (326)
..+++|+.|+++++. ++.++.. ..+..+++|++|++++| .++..
T Consensus 85 -------~~l~~L~~L~ls~N~-i~~~~~~-~~~~~l~~L~~L~l~~N-~l~~~ 128 (149)
T 2je0_A 85 -------EKCPNLTHLNLSGNK-IKDLSTI-EPLKKLENLKSLDLFNC-EVTNL 128 (149)
T ss_dssp -------HHCTTCCEEECTTSC-CCSHHHH-GGGGGCTTCCEEECTTC-GGGGS
T ss_pred -------hhCCCCCEEECCCCc-CCChHHH-HHHhhCCCCCEEeCcCC-cccch
Confidence 013455555555543 3332200 03445566666666655 34443
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=98.46 E-value=2.1e-06 Score=82.42 Aligned_cols=189 Identities=16% Similarity=0.135 Sum_probs=122.7
Q ss_pred CCeeEEEecccCCcccceecCCCchhhhhhhhccccCCCccEEEcccCCCcccccccCCCCCCCCCCccEEEEecCCCCC
Q 020456 12 PKLHEVQVTEKNEDELRHWEGNLNSTIQKCYEEMIGFCDIEYLQLSDFPCLKEIWHGQALPVSFFNNLEELEVDDCTNMS 91 (326)
Q Consensus 12 ~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~L~~L~l~~c~~l~ 91 (326)
.+|+.|++.+.+.. .+... .+++|++|+++++. +..+ + ..+++|++|+++++ +++
T Consensus 59 ~~L~~L~Ls~n~L~---~lp~~-------------l~~~L~~L~Ls~N~-l~~i------p-~~l~~L~~L~Ls~N-~l~ 113 (571)
T 3cvr_A 59 NQFSELQLNRLNLS---SLPDN-------------LPPQITVLEITQNA-LISL------P-ELPASLEYLDACDN-RLS 113 (571)
T ss_dssp TTCSEEECCSSCCS---CCCSC-------------CCTTCSEEECCSSC-CSCC------C-CCCTTCCEEECCSS-CCS
T ss_pred CCccEEEeCCCCCC---ccCHh-------------HcCCCCEEECcCCC-Cccc------c-cccCCCCEEEccCC-CCC
Confidence 48888988833222 11111 15789999999764 3443 3 45799999999998 466
Q ss_pred cCCchhHHhhCCCCCEEEEccCcCcceeccccccccccCcCCCCCCCccEEecCCCccccccccccccccccccccEEeE
Q 020456 92 SAIPANLLRCLNNLRCLEVRNCDSIEEVLHLEELNADKEHISPLFPKLSELRLIDLPKLKRFCNFTENIIEMLMLWSLTI 171 (326)
Q Consensus 92 ~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~L~~L~l 171 (326)
.++. +. .+|++|+++++. +..++. .+++|+.|+++++. ++.++. .+++|+.|++
T Consensus 114 ~ip~---l~--~~L~~L~Ls~N~-l~~lp~-------------~l~~L~~L~Ls~N~-l~~lp~------~l~~L~~L~L 167 (571)
T 3cvr_A 114 TLPE---LP--ASLKHLDVDNNQ-LTMLPE-------------LPALLEYINADNNQ-LTMLPE------LPTSLEVLSV 167 (571)
T ss_dssp CCCC---CC--TTCCEEECCSSC-CSCCCC-------------CCTTCCEEECCSSC-CSCCCC------CCTTCCEEEC
T ss_pred Ccch---hh--cCCCEEECCCCc-CCCCCC-------------cCccccEEeCCCCc-cCcCCC------cCCCcCEEEC
Confidence 6543 22 299999999864 433321 35799999998864 666653 4689999999
Q ss_pred ecCCCCCccCcchhhhccCCCCCCceEEecccCcccceeccccccccCccccceeeecccceeecccCCCcceecCCCcc
Q 020456 172 ENCPNMETFVSNSVVHVTTDNKKPQKLTLEENFLLADQVQPLFDEKVGEEVKGCIVFERMNYLTLDCLPSLTSFCLGNYA 251 (326)
Q Consensus 172 ~~C~~l~~~~~~~~~~~~~~~~~L~~L~i~~~c~~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~ 251 (326)
+++ .++.++. +. . +|+.|++ .++. ++.+.... ..-....+.|+.|++.++ .++.+|....
T Consensus 168 s~N-~L~~lp~--l~---~---~L~~L~L-s~N~-L~~lp~~~-------~~L~~~~~~L~~L~Ls~N-~l~~lp~~l~- 227 (571)
T 3cvr_A 168 RNN-QLTFLPE--LP---E---SLEALDV-STNL-LESLPAVP-------VRNHHSEETEIFFRCREN-RITHIPENIL- 227 (571)
T ss_dssp CSS-CCSCCCC--CC---T---TCCEEEC-CSSC-CSSCCCCC---------------CCEEEECCSS-CCCCCCGGGG-
T ss_pred CCC-CCCCcch--hh---C---CCCEEEC-cCCC-CCchhhHH-------HhhhcccccceEEecCCC-cceecCHHHh-
Confidence 987 4666543 32 4 8999999 7764 44432210 000011123499999985 5777776544
Q ss_pred ccCCcccEEEeccCCcccccc
Q 020456 252 LEFPSLEQVVVRQCPKMKIFS 272 (326)
Q Consensus 252 ~~~~~L~~L~i~~c~~l~~l~ 272 (326)
.+++|++|++++++--...|
T Consensus 228 -~l~~L~~L~L~~N~l~~~~p 247 (571)
T 3cvr_A 228 -SLDPTCTIILEDNPLSSRIR 247 (571)
T ss_dssp -GSCTTEEEECCSSSCCHHHH
T ss_pred -cCCCCCEEEeeCCcCCCcCH
Confidence 68999999998887544333
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=98.46 E-value=1.8e-06 Score=72.93 Aligned_cols=36 Identities=19% Similarity=0.295 Sum_probs=15.1
Q ss_pred CCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccC
Q 020456 76 FNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNC 113 (326)
Q Consensus 76 ~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c 113 (326)
+++|++|+++++. +..+++. .+..+++|++|+++++
T Consensus 63 l~~L~~L~L~~N~-l~~i~~~-~~~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 63 LINLKELYLGSNQ-LGALPVG-VFDSLTQLTVLDLGTN 98 (229)
T ss_dssp CTTCCEEECCSSC-CCCCCTT-TTTTCTTCCEEECCSS
T ss_pred ccCCcEEECCCCC-CCCcChh-hcccCCCcCEEECCCC
Confidence 4445555554442 3333221 1334444555554443
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=98.44 E-value=9.3e-07 Score=71.48 Aligned_cols=57 Identities=19% Similarity=0.290 Sum_probs=28.4
Q ss_pred CCccEEEcccCCCcccccccCCCCCCCCCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccC
Q 020456 49 CDIEYLQLSDFPCLKEIWHGQALPVSFFNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNC 113 (326)
Q Consensus 49 ~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c 113 (326)
++|+.|+++++. +..+ ... ..+++|++|+++++. ++.+++. ++..+++|++|+++++
T Consensus 42 ~~L~~L~Ls~N~-l~~~-~~l----~~l~~L~~L~Ls~N~-l~~~~~~-~~~~l~~L~~L~L~~N 98 (176)
T 1a9n_A 42 DQFDAIDFSDNE-IRKL-DGF----PLLRRLKTLLVNNNR-ICRIGEG-LDQALPDLTELILTNN 98 (176)
T ss_dssp TCCSEEECCSSC-CCEE-CCC----CCCSSCCEEECCSSC-CCEECSC-HHHHCTTCCEEECCSC
T ss_pred CCCCEEECCCCC-CCcc-ccc----ccCCCCCEEECCCCc-ccccCcc-hhhcCCCCCEEECCCC
Confidence 366666666543 2322 111 345566666666653 4444322 2355666666666554
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=98.42 E-value=1.8e-06 Score=72.97 Aligned_cols=65 Identities=15% Similarity=0.060 Sum_probs=30.5
Q ss_pred CCCCCEEEEccCcCcceeccccccccccCcCCCCCCCccEEecCCCccccccccccccccccccccEEeEecCCCCCcc
Q 020456 102 LNNLRCLEVRNCDSIEEVLHLEELNADKEHISPLFPKLSELRLIDLPKLKRFCNFTENIIEMLMLWSLTIENCPNMETF 180 (326)
Q Consensus 102 l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~L~~L~l~~C~~l~~~ 180 (326)
.++|++|+++++. +..+.+ .....+++|+.|++++.. ++.++.. .+..+++|+.|+++++ .++.+
T Consensus 39 ~~~L~~L~Ls~n~-i~~~~~---------~~~~~l~~L~~L~L~~N~-l~~i~~~--~~~~l~~L~~L~Ls~N-~l~~l 103 (229)
T 3e6j_A 39 PTNAQILYLHDNQ-ITKLEP---------GVFDSLINLKELYLGSNQ-LGALPVG--VFDSLTQLTVLDLGTN-QLTVL 103 (229)
T ss_dssp CTTCSEEECCSSC-CCCCCT---------TTTTTCTTCCEEECCSSC-CCCCCTT--TTTTCTTCCEEECCSS-CCCCC
T ss_pred CCCCCEEEcCCCc-cCccCH---------HHhhCccCCcEEECCCCC-CCCcChh--hcccCCCcCEEECCCC-cCCcc
Confidence 3677777777653 222211 011123456666665543 3443321 2344555666666554 34444
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=98.42 E-value=1.7e-07 Score=73.66 Aligned_cols=34 Identities=24% Similarity=0.330 Sum_probs=16.2
Q ss_pred CCCccEEecCCCccccccccccccccccccccEEeEecC
Q 020456 136 FPKLSELRLIDLPKLKRFCNFTENIIEMLMLWSLTIENC 174 (326)
Q Consensus 136 ~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~L~~L~l~~C 174 (326)
+++|+.|+++++ .++.+ . .+..+++|+.|++++|
T Consensus 41 l~~L~~L~l~~n-~l~~~-~---~~~~l~~L~~L~Ls~n 74 (149)
T 2je0_A 41 FEELEFLSTINV-GLTSI-A---NLPKLNKLKKLELSDN 74 (149)
T ss_dssp CTTCCEEECTTS-CCCCC-T---TCCCCTTCCEEECCSS
T ss_pred cCCCcEEECcCC-CCCCc-h---hhhcCCCCCEEECCCC
Confidence 345555555554 23333 1 3444555555555554
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=98.42 E-value=2.6e-06 Score=70.65 Aligned_cols=36 Identities=22% Similarity=0.153 Sum_probs=16.7
Q ss_pred CCCccEEecCCCccccccccccccccccccccEEeEecC
Q 020456 136 FPKLSELRLIDLPKLKRFCNFTENIIEMLMLWSLTIENC 174 (326)
Q Consensus 136 ~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~L~~L~l~~C 174 (326)
+++|+.|++.++ +++.++.. .+..+++|++|+++++
T Consensus 51 l~~L~~L~l~~n-~l~~~~~~--~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 51 LTSLTQLYLGGN-KLQSLPNG--VFNKLTSLTYLNLSTN 86 (208)
T ss_dssp CTTCSEEECCSS-CCCCCCTT--TTTTCTTCCEEECCSS
T ss_pred cccCcEEECCCC-ccCccChh--hcCCCCCcCEEECCCC
Confidence 345555555553 23333321 1234555555555554
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=98.37 E-value=2.7e-07 Score=74.48 Aligned_cols=41 Identities=12% Similarity=0.106 Sum_probs=23.9
Q ss_pred CccEEecCCCccccccccccccccccccccEEeEecCCCCCcc
Q 020456 138 KLSELRLIDLPKLKRFCNFTENIIEMLMLWSLTIENCPNMETF 180 (326)
Q Consensus 138 ~L~~L~l~~c~~L~~~~~~~~~~~~~~~L~~L~l~~C~~l~~~ 180 (326)
+|++|+|++|++++.--. ..+..+++|++|++++|+++++.
T Consensus 115 ~L~~L~Ls~C~~ITD~Gl--~~L~~~~~L~~L~L~~c~~Itd~ 155 (176)
T 3e4g_A 115 SMLEMEIISCGNVTDKGI--IALHHFRNLKYLFLSDLPGVKEK 155 (176)
T ss_dssp HCCEEEEESCTTCCHHHH--HHGGGCTTCCEEEEESCTTCCCH
T ss_pred CCCEEEcCCCCcCCHHHH--HHHhcCCCCCEEECCCCCCCCch
Confidence 344444444444432100 03345788888888888888775
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.34 E-value=5.3e-06 Score=69.64 Aligned_cols=36 Identities=17% Similarity=0.287 Sum_probs=17.5
Q ss_pred CCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccC
Q 020456 77 NNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNC 113 (326)
Q Consensus 77 ~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c 113 (326)
+.+++|+++++ +++.+.+...+..+++|++|+++++
T Consensus 32 ~~~~~L~L~~N-~l~~~~~~~~~~~l~~L~~L~L~~N 67 (220)
T 2v70_A 32 QYTAELRLNNN-EFTVLEATGIFKKLPQLRKINFSNN 67 (220)
T ss_dssp TTCSEEECCSS-CCCEECCCCCGGGCTTCCEEECCSS
T ss_pred CCCCEEEcCCC-cCCccCchhhhccCCCCCEEECCCC
Confidence 34555555554 2444433223445555555555553
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=98.33 E-value=1.8e-07 Score=75.47 Aligned_cols=19 Identities=11% Similarity=0.193 Sum_probs=9.2
Q ss_pred ccccccEEeEecCCCCCcc
Q 020456 162 EMLMLWSLTIENCPNMETF 180 (326)
Q Consensus 162 ~~~~L~~L~l~~C~~l~~~ 180 (326)
.+++|++|++++|.++++.
T Consensus 83 ~~~~L~~L~L~~C~~ItD~ 101 (176)
T 3e4g_A 83 GLQYVEKIRLCKCHYIEDG 101 (176)
T ss_dssp TCSCCCEEEEESCTTCCHH
T ss_pred CCCCCCEEEeCCCCccCHH
Confidence 3445555555555544443
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.33 E-value=3.8e-06 Score=74.94 Aligned_cols=35 Identities=17% Similarity=0.296 Sum_probs=24.4
Q ss_pred CCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccC
Q 020456 76 FNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNC 113 (326)
Q Consensus 76 ~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c 113 (326)
+++|++|.+.+ +++.+... .+..|++|++|.+.+.
T Consensus 100 ~~~L~~l~L~~--~i~~I~~~-aF~~~~~L~~l~l~~n 134 (329)
T 3sb4_A 100 KQTLEKVILSE--KIKNIEDA-AFKGCDNLKICQIRKK 134 (329)
T ss_dssp CTTCCC-CBCT--TCCEECTT-TTTTCTTCCEEEBCCS
T ss_pred cCCCcEEECCc--cccchhHH-HhhcCcccceEEcCCC
Confidence 67888888877 56665443 3677888888888764
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=98.27 E-value=8.3e-06 Score=68.44 Aligned_cols=128 Identities=17% Similarity=0.178 Sum_probs=70.9
Q ss_pred CCccEEEcccCCCcccccccCCCCCCCCCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccCcCcceeccccccccc
Q 020456 49 CDIEYLQLSDFPCLKEIWHGQALPVSFFNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNCDSIEEVLHLEELNAD 128 (326)
Q Consensus 49 ~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~ 128 (326)
++|++|++.+.. +..+.... ...+++|++|+++++. ++.+.+.. +..+++|++|+++++. +..++.
T Consensus 32 ~~l~~L~l~~n~-i~~i~~~~---~~~l~~L~~L~Ls~N~-i~~~~~~~-~~~l~~L~~L~Ls~N~-l~~l~~------- 97 (220)
T 2v9t_B 32 ETITEIRLEQNT-IKVIPPGA---FSPYKKLRRIDLSNNQ-ISELAPDA-FQGLRSLNSLVLYGNK-ITELPK------- 97 (220)
T ss_dssp TTCCEEECCSSC-CCEECTTS---STTCTTCCEEECCSSC-CCEECTTT-TTTCSSCCEEECCSSC-CCCCCT-------
T ss_pred cCCCEEECCCCc-CCCcCHhH---hhCCCCCCEEECCCCc-CCCcCHHH-hhCCcCCCEEECCCCc-CCccCH-------
Confidence 577778777643 34433322 1456778888887773 55554433 5667778888777753 333311
Q ss_pred cCcCCCCCCCccEEecCCCccccccccccccccccccccEEeEecCCCCCccCcchhhhccCCCCCCceEEe
Q 020456 129 KEHISPLFPKLSELRLIDLPKLKRFCNFTENIIEMLMLWSLTIENCPNMETFVSNSVVHVTTDNKKPQKLTL 200 (326)
Q Consensus 129 ~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~L~~L~l~~C~~l~~~~~~~~~~~~~~~~~L~~L~i 200 (326)
.....+++|+.|++++.. ++.+... .+..+++|+.|+++++ .++.+.+.. ...+. +|++|++
T Consensus 98 --~~f~~l~~L~~L~L~~N~-l~~~~~~--~~~~l~~L~~L~L~~N-~l~~~~~~~-~~~l~---~L~~L~L 159 (220)
T 2v9t_B 98 --SLFEGLFSLQLLLLNANK-INCLRVD--AFQDLHNLNLLSLYDN-KLQTIAKGT-FSPLR---AIQTMHL 159 (220)
T ss_dssp --TTTTTCTTCCEEECCSSC-CCCCCTT--TTTTCTTCCEEECCSS-CCSCCCTTT-TTTCT---TCCEEEC
T ss_pred --hHccCCCCCCEEECCCCC-CCEeCHH--HcCCCCCCCEEECCCC-cCCEECHHH-HhCCC---CCCEEEe
Confidence 011134577777777643 4443221 3455677777777764 455553322 22333 6777776
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=98.22 E-value=8.2e-06 Score=68.48 Aligned_cols=83 Identities=13% Similarity=0.088 Sum_probs=38.4
Q ss_pred CCCCEEEEccCcCcceeccccccccccCcCCCCCCCccEEecCCCccccccccccccccccccccEEeEecCCCCCccCc
Q 020456 103 NNLRCLEVRNCDSIEEVLHLEELNADKEHISPLFPKLSELRLIDLPKLKRFCNFTENIIEMLMLWSLTIENCPNMETFVS 182 (326)
Q Consensus 103 ~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~L~~L~l~~C~~l~~~~~ 182 (326)
++|++|+++++. +..+... ....+++|+.|++++.. ++.+... .+..+++|+.|+++++ .++.++
T Consensus 32 ~~l~~L~l~~n~-i~~i~~~---------~~~~l~~L~~L~Ls~N~-i~~~~~~--~~~~l~~L~~L~Ls~N-~l~~l~- 96 (220)
T 2v9t_B 32 ETITEIRLEQNT-IKVIPPG---------AFSPYKKLRRIDLSNNQ-ISELAPD--AFQGLRSLNSLVLYGN-KITELP- 96 (220)
T ss_dssp TTCCEEECCSSC-CCEECTT---------SSTTCTTCCEEECCSSC-CCEECTT--TTTTCSSCCEEECCSS-CCCCCC-
T ss_pred cCCCEEECCCCc-CCCcCHh---------HhhCCCCCCEEECCCCc-CCCcCHH--HhhCCcCCCEEECCCC-cCCccC-
Confidence 567777776643 3333210 11123466666666543 3333111 3445566666666553 344442
Q ss_pred chhhhccCCCCCCceEEecccC
Q 020456 183 NSVVHVTTDNKKPQKLTLEENF 204 (326)
Q Consensus 183 ~~~~~~~~~~~~L~~L~i~~~c 204 (326)
......+. +|++|++ .++
T Consensus 97 ~~~f~~l~---~L~~L~L-~~N 114 (220)
T 2v9t_B 97 KSLFEGLF---SLQLLLL-NAN 114 (220)
T ss_dssp TTTTTTCT---TCCEEEC-CSS
T ss_pred HhHccCCC---CCCEEEC-CCC
Confidence 22222333 5666655 443
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.22 E-value=1.2e-05 Score=67.48 Aligned_cols=36 Identities=8% Similarity=0.114 Sum_probs=18.4
Q ss_pred cCCcccEEEeccCCccccc-cCCCCCCCCccEEEeccc
Q 020456 253 EFPSLEQVVVRQCPKMKIF-SQGVLDTPMLNKVNVTEE 289 (326)
Q Consensus 253 ~~~~L~~L~i~~c~~l~~l-~~~~~~~~~L~~L~l~~c 289 (326)
.+++|++|+++++ .++.+ |..+..+++|++|+++++
T Consensus 127 ~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N 163 (220)
T 2v70_A 127 GLSSVRLLSLYDN-QITTVAPGAFDTLHSLSTLNLLAN 163 (220)
T ss_dssp TCTTCSEEECTTS-CCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CCccCCEEECCCC-cCCEECHHHhcCCCCCCEEEecCc
Confidence 4455555555443 23333 334445566666666554
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.19 E-value=9e-06 Score=73.53 Aligned_cols=138 Identities=16% Similarity=0.144 Sum_probs=87.3
Q ss_pred CCCccEEEcccCCCcccccccCCCCCCCCCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccCcCcceecccccccc
Q 020456 48 FCDIEYLQLSDFPCLKEIWHGQALPVSFFNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNCDSIEEVLHLEELNA 127 (326)
Q Consensus 48 ~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~ 127 (326)
.+.++.|++++. .+..++... +. ..+++|++|+++++ +++.+.+.. +..+++|++|+++++. ++.++..
T Consensus 38 ~~~l~~L~Ls~N-~l~~l~~~~-~~-~~l~~L~~L~L~~N-~i~~i~~~~-~~~l~~L~~L~Ls~N~-l~~~~~~----- 106 (361)
T 2xot_A 38 PSYTALLDLSHN-NLSRLRAEW-TP-TRLTNLHSLLLSHN-HLNFISSEA-FVPVPNLRYLDLSSNH-LHTLDEF----- 106 (361)
T ss_dssp CTTCSEEECCSS-CCCEECTTS-SS-SCCTTCCEEECCSS-CCCEECTTT-TTTCTTCCEEECCSSC-CCEECTT-----
T ss_pred CCCCCEEECCCC-CCCccChhh-hh-hcccccCEEECCCC-cCCccChhh-ccCCCCCCEEECCCCc-CCcCCHH-----
Confidence 456888998865 345544433 11 26789999999887 466665433 6778999999998864 5444221
Q ss_pred ccCcCCCCCCCccEEecCCCccccccccccccccccccccEEeEecCCCCCccCcchhh---hccCCCCCCceEEecccC
Q 020456 128 DKEHISPLFPKLSELRLIDLPKLKRFCNFTENIIEMLMLWSLTIENCPNMETFVSNSVV---HVTTDNKKPQKLTLEENF 204 (326)
Q Consensus 128 ~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~L~~L~l~~C~~l~~~~~~~~~---~~~~~~~~L~~L~i~~~c 204 (326)
....+++|+.|+++++. +..+... .+..+++|+.|+++++ .+..++. ... ..+. +|+.|++ .++
T Consensus 107 ----~~~~l~~L~~L~L~~N~-i~~~~~~--~~~~l~~L~~L~L~~N-~l~~l~~-~~~~~~~~l~---~L~~L~L-~~N 173 (361)
T 2xot_A 107 ----LFSDLQALEVLLLYNNH-IVVVDRN--AFEDMAQLQKLYLSQN-QISRFPV-ELIKDGNKLP---KLMLLDL-SSN 173 (361)
T ss_dssp ----TTTTCTTCCEEECCSSC-CCEECTT--TTTTCTTCCEEECCSS-CCCSCCG-GGTC----CT---TCCEEEC-CSS
T ss_pred ----HhCCCcCCCEEECCCCc-ccEECHH--HhCCcccCCEEECCCC-cCCeeCH-HHhcCcccCC---cCCEEEC-CCC
Confidence 11234688999988764 4444321 4667888999999885 5666633 322 2344 8888888 665
Q ss_pred ccccee
Q 020456 205 LLADQV 210 (326)
Q Consensus 205 ~~l~~~ 210 (326)
. ++.+
T Consensus 174 ~-l~~l 178 (361)
T 2xot_A 174 K-LKKL 178 (361)
T ss_dssp C-CCCC
T ss_pred C-CCcc
Confidence 3 4433
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.16 E-value=6.3e-06 Score=74.57 Aligned_cols=159 Identities=16% Similarity=0.125 Sum_probs=93.3
Q ss_pred CCCCccEEEEecCCCCCcCCchhHHh-hCCCCCEEEEccCcCcceeccccccccccCcCCCCCCCccEEecCCCcccccc
Q 020456 75 FFNNLEELEVDDCTNMSSAIPANLLR-CLNNLRCLEVRNCDSIEEVLHLEELNADKEHISPLFPKLSELRLIDLPKLKRF 153 (326)
Q Consensus 75 ~~~~L~~L~l~~c~~l~~~~~~~~~~-~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~ 153 (326)
..++++.|+++++ +++.+.+.. +. .+++|++|+++++. +..+... ....+++|+.|++++.. ++.+
T Consensus 37 ~~~~l~~L~Ls~N-~l~~l~~~~-~~~~l~~L~~L~L~~N~-i~~i~~~---------~~~~l~~L~~L~Ls~N~-l~~~ 103 (361)
T 2xot_A 37 LPSYTALLDLSHN-NLSRLRAEW-TPTRLTNLHSLLLSHNH-LNFISSE---------AFVPVPNLRYLDLSSNH-LHTL 103 (361)
T ss_dssp CCTTCSEEECCSS-CCCEECTTS-SSSCCTTCCEEECCSSC-CCEECTT---------TTTTCTTCCEEECCSSC-CCEE
T ss_pred CCCCCCEEECCCC-CCCccChhh-hhhcccccCEEECCCCc-CCccChh---------hccCCCCCCEEECCCCc-CCcC
Confidence 3467899999987 466665543 33 78999999998864 4444211 11235688999988854 6665
Q ss_pred ccccccccccccccEEeEecCCCCCccCcchhhhccCCCCCCceEEecccCcccceeccccccccCccccceeeecccce
Q 020456 154 CNFTENIIEMLMLWSLTIENCPNMETFVSNSVVHVTTDNKKPQKLTLEENFLLADQVQPLFDEKVGEEVKGCIVFERMNY 233 (326)
Q Consensus 154 ~~~~~~~~~~~~L~~L~l~~C~~l~~~~~~~~~~~~~~~~~L~~L~i~~~c~~l~~~~~~~~~~~~~~~~~~~~l~~L~~ 233 (326)
+.. .+..+++|+.|+++++ .+..+.+..+ ..+. +|++|++ .++. ++.+.... .. ....+++|+.
T Consensus 104 ~~~--~~~~l~~L~~L~L~~N-~i~~~~~~~~-~~l~---~L~~L~L-~~N~-l~~l~~~~------~~-~~~~l~~L~~ 167 (361)
T 2xot_A 104 DEF--LFSDLQALEVLLLYNN-HIVVVDRNAF-EDMA---QLQKLYL-SQNQ-ISRFPVEL------IK-DGNKLPKLML 167 (361)
T ss_dssp CTT--TTTTCTTCCEEECCSS-CCCEECTTTT-TTCT---TCCEEEC-CSSC-CCSCCGGG------TC-----CTTCCE
T ss_pred CHH--HhCCCcCCCEEECCCC-cccEECHHHh-CCcc---cCCEEEC-CCCc-CCeeCHHH------hc-CcccCCcCCE
Confidence 532 3567788899988875 4655533333 3344 8888888 6654 43332210 00 0134678888
Q ss_pred eecccCCCcceecCCCccccCCc--ccEEEecc
Q 020456 234 LTLDCLPSLTSFCLGNYALEFPS--LEQVVVRQ 264 (326)
Q Consensus 234 L~l~~c~~l~~~~~~~~~~~~~~--L~~L~i~~ 264 (326)
|++.+. .++.++..... .++. |+.|.+.+
T Consensus 168 L~L~~N-~l~~l~~~~~~-~l~~~~l~~l~l~~ 198 (361)
T 2xot_A 168 LDLSSN-KLKKLPLTDLQ-KLPAWVKNGLYLHN 198 (361)
T ss_dssp EECCSS-CCCCCCHHHHH-HSCHHHHTTEECCS
T ss_pred EECCCC-CCCccCHHHhh-hccHhhcceEEecC
Confidence 888774 45554432111 3443 35566654
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=98.05 E-value=4.7e-05 Score=62.29 Aligned_cols=59 Identities=8% Similarity=0.089 Sum_probs=29.3
Q ss_pred cccceeecccCCCcceecCCCccccCCcccEEEeccCCccccccCCCCCCCCccEEEeccc
Q 020456 229 ERMNYLTLDCLPSLTSFCLGNYALEFPSLEQVVVRQCPKMKIFSQGVLDTPMLNKVNVTEE 289 (326)
Q Consensus 229 ~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~~L~~L~l~~c 289 (326)
++|++|++.+. .++.++..... .+++|++|+++++.--...|..+..+++|++|+++++
T Consensus 78 ~~L~~L~Ls~N-~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 136 (192)
T 1w8a_A 78 SHIQELQLGEN-KIKEISNKMFL-GLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136 (192)
T ss_dssp TTCCEEECCSC-CCCEECSSSST-TCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTC
T ss_pred ccCCEEECCCC-cCCccCHHHhc-CCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCC
Confidence 44555555442 23333332221 4556666666554322223445555667777777665
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.03 E-value=2.5e-06 Score=77.29 Aligned_cols=57 Identities=19% Similarity=0.192 Sum_probs=27.1
Q ss_pred cCCCccEEEcccCCCcccccccCCCCCCCCCCccEEEEecCCCCCcCCchhHH-hhCCCCCEEEEc
Q 020456 47 GFCDIEYLQLSDFPCLKEIWHGQALPVSFFNNLEELEVDDCTNMSSAIPANLL-RCLNNLRCLEVR 111 (326)
Q Consensus 47 ~~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~-~~l~~L~~L~l~ 111 (326)
.+|+|++|.+.++..+. ++....++|++|.+..|. +.......+. ..+|+|++|++.
T Consensus 170 ~~P~L~~L~L~g~~~l~-------l~~~~~~~L~~L~L~~~~-l~~~~l~~l~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 170 AMPLLNNLKIKGTNNLS-------IGKKPRPNLKSLEIISGG-LPDSVVEDILGSDLPNLEKLVLY 227 (362)
T ss_dssp TCTTCCEEEEECCBTCB-------CCSCBCTTCSEEEEECSB-CCHHHHHHHHHSBCTTCCEEEEE
T ss_pred cCCCCcEEEEeCCCCce-------eccccCCCCcEEEEecCC-CChHHHHHHHHccCCCCcEEEEe
Confidence 36667777666543221 111124666677666553 2221111111 146666666664
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=98.01 E-value=9.5e-06 Score=65.44 Aligned_cols=82 Identities=13% Similarity=0.165 Sum_probs=40.2
Q ss_pred hCCCCCEEEEccCcCcceeccccccccccCcCCCCCCCccEEecCCCccccccccccccccccccccEEeEecCCCCCcc
Q 020456 101 CLNNLRCLEVRNCDSIEEVLHLEELNADKEHISPLFPKLSELRLIDLPKLKRFCNFTENIIEMLMLWSLTIENCPNMETF 180 (326)
Q Consensus 101 ~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~L~~L~l~~C~~l~~~ 180 (326)
.+++|++|+++++. +..+.. +...+++|+.|+++++ .++.+. .+..+++|+.|+++++ .+..+
T Consensus 17 ~~~~L~~L~l~~n~-l~~i~~----------~~~~~~~L~~L~Ls~N-~l~~~~----~l~~l~~L~~L~Ls~N-~l~~~ 79 (176)
T 1a9n_A 17 NAVRDRELDLRGYK-IPVIEN----------LGATLDQFDAIDFSDN-EIRKLD----GFPLLRRLKTLLVNNN-RICRI 79 (176)
T ss_dssp CTTSCEEEECTTSC-CCSCCC----------GGGGTTCCSEEECCSS-CCCEEC----CCCCCSSCCEEECCSS-CCCEE
T ss_pred CcCCceEEEeeCCC-CchhHH----------hhhcCCCCCEEECCCC-CCCccc----ccccCCCCCEEECCCC-ccccc
Confidence 45667777776653 332211 1112346666666664 244431 4455666666666654 34444
Q ss_pred CcchhhhccCCCCCCceEEecccC
Q 020456 181 VSNSVVHVTTDNKKPQKLTLEENF 204 (326)
Q Consensus 181 ~~~~~~~~~~~~~~L~~L~i~~~c 204 (326)
+ ..+...++ +|++|++ .++
T Consensus 80 ~-~~~~~~l~---~L~~L~L-~~N 98 (176)
T 1a9n_A 80 G-EGLDQALP---DLTELIL-TNN 98 (176)
T ss_dssp C-SCHHHHCT---TCCEEEC-CSC
T ss_pred C-cchhhcCC---CCCEEEC-CCC
Confidence 2 22222333 5666666 444
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.00 E-value=2.1e-05 Score=70.05 Aligned_cols=102 Identities=18% Similarity=0.132 Sum_probs=71.9
Q ss_pred cccccEEeEecCCCCCccCcchhhhccCCCCCCceEEecccCcccceeccccccccCccccceeeecccc-eeecccCCC
Q 020456 163 MLMLWSLTIENCPNMETFVSNSVVHVTTDNKKPQKLTLEENFLLADQVQPLFDEKVGEEVKGCIVFERMN-YLTLDCLPS 241 (326)
Q Consensus 163 ~~~L~~L~l~~C~~l~~~~~~~~~~~~~~~~~L~~L~i~~~c~~l~~~~~~~~~~~~~~~~~~~~l~~L~-~L~l~~c~~ 241 (326)
+++|+++++.++ +++.+ +...+..+. +|+++.+ .+- ++.+.... -..+++|+ .+.+.+ +
T Consensus 225 ~~~L~~l~L~~n-~i~~I-~~~aF~~~~---~L~~l~l-~~n--i~~I~~~a----------F~~~~~L~~~l~l~~--~ 284 (329)
T 3sb4_A 225 MPNLVSLDISKT-NATTI-PDFTFAQKK---YLLKIKL-PHN--LKTIGQRV----------FSNCGRLAGTLELPA--S 284 (329)
T ss_dssp CTTCCEEECTTB-CCCEE-CTTTTTTCT---TCCEEEC-CTT--CCEECTTT----------TTTCTTCCEEEEECT--T
T ss_pred cCCCeEEECCCC-Cccee-cHhhhhCCC---CCCEEEC-Ccc--cceehHHH----------hhCChhccEEEEEcc--c
Confidence 688999999864 47777 444555677 8999999 663 66654331 22356788 888877 7
Q ss_pred cceecCCCccccCCcccEEEeccCCccccccC-CCCCCCCccEEEe
Q 020456 242 LTSFCLGNYALEFPSLEQVVVRQCPKMKIFSQ-GVLDTPMLNKVNV 286 (326)
Q Consensus 242 l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~-~~~~~~~L~~L~l 286 (326)
++.+...... .|++|+++.+.. ..++.++. .+..+++|++++.
T Consensus 285 l~~I~~~aF~-~c~~L~~l~l~~-n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 285 VTAIEFGAFM-GCDNLRYVLATG-DKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp CCEECTTTTT-TCTTEEEEEECS-SCCCEECTTTTCTTCCCCEEEC
T ss_pred ceEEchhhhh-CCccCCEEEeCC-CccCccchhhhcCCcchhhhcc
Confidence 7888765544 789999998843 46766766 5557899999874
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=97.97 E-value=5.8e-05 Score=60.70 Aligned_cols=59 Identities=17% Similarity=0.288 Sum_probs=34.7
Q ss_pred ecccceeecccCCCcceecCCCccccCCcccEEEeccCCccccccCCC-CCCCCccEEEeccc
Q 020456 228 FERMNYLTLDCLPSLTSFCLGNYALEFPSLEQVVVRQCPKMKIFSQGV-LDTPMLNKVNVTEE 289 (326)
Q Consensus 228 l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~-~~~~~L~~L~l~~c 289 (326)
+++|++|++.++ .++.++..... .+++|++|+++++ .++.+|... ..+++|++|+++++
T Consensus 75 l~~L~~L~l~~N-~l~~~~~~~~~-~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N 134 (177)
T 2o6r_A 75 LTKLTILYLHEN-KLQSLPNGVFD-KLTQLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTN 134 (177)
T ss_dssp CTTCCEEECCSS-CCCCCCTTTTT-TCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSS
T ss_pred CCccCEEECCCC-CccccCHHHhh-CCcccCEEECcCC-cceEeCHHHhcCCcccCEEEecCC
Confidence 455666666553 34444433221 5667777777665 455566543 45778888888776
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=97.91 E-value=0.00015 Score=58.14 Aligned_cols=108 Identities=19% Similarity=0.178 Sum_probs=49.4
Q ss_pred CCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccCcCcceeccccccccccCcCCCCCCCccEEecCCCcccccccc
Q 020456 76 FNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNCDSIEEVLHLEELNADKEHISPLFPKLSELRLIDLPKLKRFCN 155 (326)
Q Consensus 76 ~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~ 155 (326)
+++|++|+++++. ++.+++. .++.+++|++|+++++. +..++.. ....+++|+.|++++. +++.++.
T Consensus 27 ~~~l~~L~l~~n~-l~~~~~~-~~~~l~~L~~L~l~~n~-l~~~~~~---------~~~~l~~L~~L~l~~N-~l~~~~~ 93 (177)
T 2o6r_A 27 PSSATRLELESNK-LQSLPHG-VFDKLTQLTKLSLSQNQ-IQSLPDG---------VFDKLTKLTILYLHEN-KLQSLPN 93 (177)
T ss_dssp CTTCSEEECCSSC-CCCCCTT-TTTTCTTCSEEECCSSC-CCCCCTT---------TTTTCTTCCEEECCSS-CCCCCCT
T ss_pred CCCCcEEEeCCCc-ccEeCHH-HhcCcccccEEECCCCc-ceEeChh---------HccCCCccCEEECCCC-CccccCH
Confidence 3556666666553 4333332 23455666666665542 2222110 0112345555555553 2333332
Q ss_pred ccccccccccccEEeEecCCCCCccCcchhhhccCCCCCCceEEecccC
Q 020456 156 FTENIIEMLMLWSLTIENCPNMETFVSNSVVHVTTDNKKPQKLTLEENF 204 (326)
Q Consensus 156 ~~~~~~~~~~L~~L~l~~C~~l~~~~~~~~~~~~~~~~~L~~L~i~~~c 204 (326)
. .+..+++|+.|+++++ .++.+++ .....++ +|++|++ .++
T Consensus 94 ~--~~~~l~~L~~L~l~~N-~l~~~~~-~~~~~l~---~L~~L~l-~~N 134 (177)
T 2o6r_A 94 G--VFDKLTQLKELALDTN-QLKSVPD-GIFDRLT---SLQKIWL-HTN 134 (177)
T ss_dssp T--TTTTCTTCCEEECCSS-CCSCCCT-TTTTTCT---TCCEEEC-CSS
T ss_pred H--HhhCCcccCEEECcCC-cceEeCH-HHhcCCc---ccCEEEe-cCC
Confidence 1 2344566666666654 4444422 2222333 6666666 544
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=97.86 E-value=0.00013 Score=59.51 Aligned_cols=105 Identities=17% Similarity=0.168 Sum_probs=49.7
Q ss_pred CCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccCcCcceeccccccccccCcCCCCCCCccEEecCCCccccccccc
Q 020456 77 NNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNCDSIEEVLHLEELNADKEHISPLFPKLSELRLIDLPKLKRFCNF 156 (326)
Q Consensus 77 ~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~ 156 (326)
.+|++|+++++ +++.+.+...++.+++|++|+++++. ++.+.+. ....+++|+.|++++.. ++.++..
T Consensus 29 ~~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~---------~~~~l~~L~~L~Ls~N~-l~~~~~~ 96 (192)
T 1w8a_A 29 LHTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRNQ-LTGIEPN---------AFEGASHIQELQLGENK-IKEISNK 96 (192)
T ss_dssp TTCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSSC-CCCBCTT---------TTTTCTTCCEEECCSCC-CCEECSS
T ss_pred CCCCEEECCCC-cCCccCCccccccCCCCCEEECCCCC-CCCcCHh---------HcCCcccCCEEECCCCc-CCccCHH
Confidence 46666666665 34444443234556666666666543 2222110 01123456666665532 3333321
Q ss_pred cccccccccccEEeEecCCCCCccCcchhhhccCCCCCCceEEe
Q 020456 157 TENIIEMLMLWSLTIENCPNMETFVSNSVVHVTTDNKKPQKLTL 200 (326)
Q Consensus 157 ~~~~~~~~~L~~L~l~~C~~l~~~~~~~~~~~~~~~~~L~~L~i 200 (326)
.+..+++|++|+++++ .+..+.+..+. .++ +|++|++
T Consensus 97 --~~~~l~~L~~L~L~~N-~l~~~~~~~~~-~l~---~L~~L~L 133 (192)
T 1w8a_A 97 --MFLGLHQLKTLNLYDN-QISCVMPGSFE-HLN---SLTSLNL 133 (192)
T ss_dssp --SSTTCTTCCEEECCSS-CCCEECTTSST-TCT---TCCEEEC
T ss_pred --HhcCCCCCCEEECCCC-cCCeeCHHHhh-cCC---CCCEEEe
Confidence 2445566666666654 34444232222 233 5666666
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.82 E-value=0.0003 Score=57.52 Aligned_cols=107 Identities=13% Similarity=0.102 Sum_probs=62.5
Q ss_pred CCCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccCcCcceeccccccccccCcCCCCCCCccEEecCCCccccccc
Q 020456 75 FFNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNCDSIEEVLHLEELNADKEHISPLFPKLSELRLIDLPKLKRFC 154 (326)
Q Consensus 75 ~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~ 154 (326)
..++|++|++.++ +++.++. .+..+++|++|+++++. ++.+.. .....+++|+.|++++.. ++.++
T Consensus 29 ~~~~l~~L~L~~n-~i~~ip~--~~~~l~~L~~L~Ls~N~-i~~i~~---------~~f~~l~~L~~L~Ls~N~-l~~i~ 94 (193)
T 2wfh_A 29 IPRDVTELYLDGN-QFTLVPK--ELSNYKHLTLIDLSNNR-ISTLSN---------QSFSNMTQLLTLILSYNR-LRCIP 94 (193)
T ss_dssp CCTTCCEEECCSS-CCCSCCG--GGGGCTTCCEEECCSSC-CCCCCT---------TTTTTCTTCCEEECCSSC-CCBCC
T ss_pred CCCCCCEEECCCC-cCchhHH--HhhcccCCCEEECCCCc-CCEeCH---------hHccCCCCCCEEECCCCc-cCEeC
Confidence 3467888888776 3555542 26778888888887753 332211 011134577777777643 55544
Q ss_pred cccccccccccccEEeEecCCCCCccCcchhhhccCCCCCCceEEeccc
Q 020456 155 NFTENIIEMLMLWSLTIENCPNMETFVSNSVVHVTTDNKKPQKLTLEEN 203 (326)
Q Consensus 155 ~~~~~~~~~~~L~~L~l~~C~~l~~~~~~~~~~~~~~~~~L~~L~i~~~ 203 (326)
.. .+..+++|+.|+++++ .++.+++ .....+. +|+.|++ .+
T Consensus 95 ~~--~f~~l~~L~~L~L~~N-~l~~~~~-~~~~~l~---~L~~L~L-~~ 135 (193)
T 2wfh_A 95 PR--TFDGLKSLRLLSLHGN-DISVVPE-GAFNDLS---ALSHLAI-GA 135 (193)
T ss_dssp TT--TTTTCTTCCEEECCSS-CCCBCCT-TTTTTCT---TCCEEEC-CS
T ss_pred HH--HhCCCCCCCEEECCCC-CCCeeCh-hhhhcCc---cccEEEe-CC
Confidence 31 3556778888888774 4555532 2233344 7777777 53
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=97.82 E-value=0.0015 Score=59.82 Aligned_cols=194 Identities=8% Similarity=0.114 Sum_probs=98.4
Q ss_pred CCccEEEcccCCCcccccccCCCCCCCCCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccCcCcceeccccccccc
Q 020456 49 CDIEYLQLSDFPCLKEIWHGQALPVSFFNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNCDSIEEVLHLEELNAD 128 (326)
Q Consensus 49 ~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~ 128 (326)
.+|+.+.+.+ .+..+.... ...|++|+++.+... +++.+.... +. +.+|+.+.+.+ .++.+...
T Consensus 157 ~~L~~i~lp~--~l~~I~~~a---F~~c~~L~~l~l~~n-~l~~I~~~a-F~-~~~L~~l~lp~--~l~~I~~~------ 220 (401)
T 4fdw_A 157 STVQEIVFPS--TLEQLKEDI---FYYCYNLKKADLSKT-KITKLPAST-FV-YAGIEEVLLPV--TLKEIGSQ------ 220 (401)
T ss_dssp CCCCEEECCT--TCCEECSST---TTTCTTCCEEECTTS-CCSEECTTT-TT-TCCCSEEECCT--TCCEECTT------
T ss_pred CCceEEEeCC--CccEehHHH---hhCcccCCeeecCCC-cceEechhh-Ee-ecccCEEEeCC--chheehhh------
Confidence 3688887764 455544333 145678888888764 455555443 22 57777777753 24433110
Q ss_pred cCcCCCCCCCccEEecCCCccccccccccccccccccccEEeEecCCCCCccCcchhhhccCCCCCCceEEecccCccc-
Q 020456 129 KEHISPLFPKLSELRLIDLPKLKRFCNFTENIIEMLMLWSLTIENCPNMETFVSNSVVHVTTDNKKPQKLTLEENFLLA- 207 (326)
Q Consensus 129 ~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~L~~L~l~~C~~l~~~~~~~~~~~~~~~~~L~~L~i~~~c~~l- 207 (326)
.-...++|+.+.+.+ +++.+... .+.. .+|+++.+.+ +++.+ ....+..+. +|+.+.+ .+...-
T Consensus 221 ---aF~~~~~L~~l~l~~--~l~~I~~~--aF~~-~~L~~i~lp~--~i~~I-~~~aF~~c~---~L~~l~l-~~~~~~~ 285 (401)
T 4fdw_A 221 ---AFLKTSQLKTIEIPE--NVSTIGQE--AFRE-SGITTVKLPN--GVTNI-ASRAFYYCP---ELAEVTT-YGSTFND 285 (401)
T ss_dssp ---TTTTCTTCCCEECCT--TCCEECTT--TTTT-CCCSEEEEET--TCCEE-CTTTTTTCT---TCCEEEE-ESSCCCC
T ss_pred ---HhhCCCCCCEEecCC--CccCcccc--cccc-CCccEEEeCC--CccEE-ChhHhhCCC---CCCEEEe-CCccccC
Confidence 111234666666653 34444332 1222 5677777743 45555 233344555 7777776 432211
Q ss_pred ---ceeccccccccCccccceeeecccceeecccCCCcceecCCCccccCCcccEEEeccCCccccccC-CCCCCCCccE
Q 020456 208 ---DQVQPLFDEKVGEEVKGCIVFERMNYLTLDCLPSLTSFCLGNYALEFPSLEQVVVRQCPKMKIFSQ-GVLDTPMLNK 283 (326)
Q Consensus 208 ---~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~-~~~~~~~L~~ 283 (326)
..+.... -..+++|+.+.+. .+++.+...... .|++|+.+.+.. .++.++. ++..+ +|++
T Consensus 286 ~~~~~I~~~a----------F~~c~~L~~l~l~--~~i~~I~~~aF~-~c~~L~~l~lp~--~l~~I~~~aF~~~-~L~~ 349 (401)
T 4fdw_A 286 DPEAMIHPYC----------LEGCPKLARFEIP--ESIRILGQGLLG-GNRKVTQLTIPA--NVTQINFSAFNNT-GIKE 349 (401)
T ss_dssp CTTCEECTTT----------TTTCTTCCEECCC--TTCCEECTTTTT-TCCSCCEEEECT--TCCEECTTSSSSS-CCCE
T ss_pred CcccEECHHH----------hhCCccCCeEEeC--CceEEEhhhhhc-CCCCccEEEECc--cccEEcHHhCCCC-CCCE
Confidence 1111110 1123556666655 245555544432 566777776632 3554444 33345 6777
Q ss_pred EEeccc
Q 020456 284 VNVTEE 289 (326)
Q Consensus 284 L~l~~c 289 (326)
+.+.+.
T Consensus 350 l~l~~n 355 (401)
T 4fdw_A 350 VKVEGT 355 (401)
T ss_dssp EEECCS
T ss_pred EEEcCC
Confidence 777654
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.80 E-value=3.6e-05 Score=69.63 Aligned_cols=15 Identities=20% Similarity=0.368 Sum_probs=9.4
Q ss_pred HhhCCCCCEEEEccC
Q 020456 99 LRCLNNLRCLEVRNC 113 (326)
Q Consensus 99 ~~~l~~L~~L~l~~c 113 (326)
+..+|+|++|.++++
T Consensus 168 l~~~P~L~~L~L~g~ 182 (362)
T 2ra8_A 168 LDAMPLLNNLKIKGT 182 (362)
T ss_dssp HHTCTTCCEEEEECC
T ss_pred HhcCCCCcEEEEeCC
Confidence 455666666666655
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=97.78 E-value=0.0017 Score=59.39 Aligned_cols=192 Identities=13% Similarity=0.113 Sum_probs=114.4
Q ss_pred CccEEEcccCCCcccccccCCCCCCCCCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccCcCcceecccccccccc
Q 020456 50 DIEYLQLSDFPCLKEIWHGQALPVSFFNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNCDSIEEVLHLEELNADK 129 (326)
Q Consensus 50 ~L~~L~l~~~~~l~~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~ 129 (326)
+|+.+.+.+ ++..|.... +. . .+|+++.+.+ .+..+... .+..|++|+.+.+.+. .+..+....
T Consensus 136 ~L~~i~l~~--~i~~I~~~a-F~--~-~~L~~i~lp~--~l~~I~~~-aF~~c~~L~~l~l~~n-~l~~I~~~a------ 199 (401)
T 4fdw_A 136 QIAKVVLNE--GLKSIGDMA-FF--N-STVQEIVFPS--TLEQLKED-IFYYCYNLKKADLSKT-KITKLPAST------ 199 (401)
T ss_dssp CCSEEECCT--TCCEECTTT-TT--T-CCCCEEECCT--TCCEECSS-TTTTCTTCCEEECTTS-CCSEECTTT------
T ss_pred CccEEEeCC--CccEECHHh-cC--C-CCceEEEeCC--CccEehHH-HhhCcccCCeeecCCC-cceEechhh------
Confidence 577777653 255544333 22 1 3688888875 45555443 3677888999888753 344442110
Q ss_pred CcCCCCCCCccEEecCCCccccccccccccccccccccEEeEecCCCCCccCcchhhhccCCCCCCceEEecccCcccce
Q 020456 130 EHISPLFPKLSELRLIDLPKLKRFCNFTENIIEMLMLWSLTIENCPNMETFVSNSVVHVTTDNKKPQKLTLEENFLLADQ 209 (326)
Q Consensus 130 ~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~L~~L~l~~C~~l~~~~~~~~~~~~~~~~~L~~L~i~~~c~~l~~ 209 (326)
+. ..+|+.+.+.+ +++.+... .+..+++|+.+.+.+ +++.+...... . . +|+.+.+ .. .++.
T Consensus 200 --F~--~~~L~~l~lp~--~l~~I~~~--aF~~~~~L~~l~l~~--~l~~I~~~aF~-~-~---~L~~i~l-p~--~i~~ 261 (401)
T 4fdw_A 200 --FV--YAGIEEVLLPV--TLKEIGSQ--AFLKTSQLKTIEIPE--NVSTIGQEAFR-E-S---GITTVKL-PN--GVTN 261 (401)
T ss_dssp --TT--TCCCSEEECCT--TCCEECTT--TTTTCTTCCCEECCT--TCCEECTTTTT-T-C---CCSEEEE-ET--TCCE
T ss_pred --Ee--ecccCEEEeCC--chheehhh--HhhCCCCCCEEecCC--CccCccccccc-c-C---CccEEEe-CC--CccE
Confidence 11 24788888863 45555442 456678899998875 56666433332 2 3 7998888 43 2444
Q ss_pred eccccccccCccccceeeecccceeecccCCC----cceecCCCccccCCcccEEEeccCCccccccC-CCCCCCCccEE
Q 020456 210 VQPLFDEKVGEEVKGCIVFERMNYLTLDCLPS----LTSFCLGNYALEFPSLEQVVVRQCPKMKIFSQ-GVLDTPMLNKV 284 (326)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~----l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~-~~~~~~~L~~L 284 (326)
+.... -..+++|+.+.+.+... ...++..... .|++|+.+.+. ..++.++. .+..|++|+.+
T Consensus 262 I~~~a----------F~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~-~c~~L~~l~l~--~~i~~I~~~aF~~c~~L~~l 328 (401)
T 4fdw_A 262 IASRA----------FYYCPELAEVTTYGSTFNDDPEAMIHPYCLE-GCPKLARFEIP--ESIRILGQGLLGGNRKVTQL 328 (401)
T ss_dssp ECTTT----------TTTCTTCCEEEEESSCCCCCTTCEECTTTTT-TCTTCCEECCC--TTCCEECTTTTTTCCSCCEE
T ss_pred EChhH----------hhCCCCCCEEEeCCccccCCcccEECHHHhh-CCccCCeEEeC--CceEEEhhhhhcCCCCccEE
Confidence 32221 12346788887765221 2245444433 78899999886 35777766 44468899999
Q ss_pred Eecc
Q 020456 285 NVTE 288 (326)
Q Consensus 285 ~l~~ 288 (326)
.+..
T Consensus 329 ~lp~ 332 (401)
T 4fdw_A 329 TIPA 332 (401)
T ss_dssp EECT
T ss_pred EECc
Confidence 8854
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.78 E-value=9.9e-05 Score=70.89 Aligned_cols=126 Identities=12% Similarity=0.092 Sum_probs=81.8
Q ss_pred CCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccCcCcceeccccccccccCcCCCCCCCccEEecCCCccccccccc
Q 020456 77 NNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNCDSIEEVLHLEELNADKEHISPLFPKLSELRLIDLPKLKRFCNF 156 (326)
Q Consensus 77 ~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~ 156 (326)
.+|+.|+++++ +++.++ . ++.+++|+.|+++++. +..++... ..+++|+.|++++. .++.++
T Consensus 441 ~~L~~L~Ls~n-~l~~lp-~--~~~l~~L~~L~Ls~N~-l~~lp~~~----------~~l~~L~~L~Ls~N-~l~~lp-- 502 (567)
T 1dce_A 441 ADVRVLHLAHK-DLTVLC-H--LEQLLLVTHLDLSHNR-LRALPPAL----------AALRCLEVLQASDN-ALENVD-- 502 (567)
T ss_dssp TTCSEEECTTS-CCSSCC-C--GGGGTTCCEEECCSSC-CCCCCGGG----------GGCTTCCEEECCSS-CCCCCG--
T ss_pred cCceEEEecCC-CCCCCc-C--ccccccCcEeecCccc-ccccchhh----------hcCCCCCEEECCCC-CCCCCc--
Confidence 36888999887 566654 3 6788999999998864 44443211 13468999999875 465555
Q ss_pred cccccccccccEEeEecCCCCCccC-cchhhhccCCCCCCceEEecccCcccceeccccccccCccccceeeecccceee
Q 020456 157 TENIIEMLMLWSLTIENCPNMETFV-SNSVVHVTTDNKKPQKLTLEENFLLADQVQPLFDEKVGEEVKGCIVFERMNYLT 235 (326)
Q Consensus 157 ~~~~~~~~~L~~L~l~~C~~l~~~~-~~~~~~~~~~~~~L~~L~i~~~c~~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~ 235 (326)
.+..+++|+.|+++++ .++.+. |..+. .++ +|+.|++ .++. ++.+.+. .......+|+|+.|+
T Consensus 503 --~l~~l~~L~~L~Ls~N-~l~~~~~p~~l~-~l~---~L~~L~L-~~N~-l~~~~~~-------~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 503 --GVANLPRLQELLLCNN-RLQQSAAIQPLV-SCP---RLVLLNL-QGNS-LCQEEGI-------QERLAEMLPSVSSIL 566 (567)
T ss_dssp --GGTTCSSCCEEECCSS-CCCSSSTTGGGG-GCT---TCCEEEC-TTSG-GGGSSSC-------TTHHHHHCTTCSEEE
T ss_pred --ccCCCCCCcEEECCCC-CCCCCCCcHHHh-cCC---CCCEEEe-cCCc-CCCCccH-------HHHHHHHCcccCccC
Confidence 4677889999999886 566664 44443 455 8999998 7765 4333221 111133468888875
Q ss_pred c
Q 020456 236 L 236 (326)
Q Consensus 236 l 236 (326)
+
T Consensus 567 l 567 (567)
T 1dce_A 567 T 567 (567)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.66 E-value=0.00041 Score=56.71 Aligned_cols=58 Identities=17% Similarity=0.125 Sum_probs=29.4
Q ss_pred CCccEEecCCCccccccccccccccccccccEEeEecCCCCCccCcchhhhccCCCCCCceEEecccC
Q 020456 137 PKLSELRLIDLPKLKRFCNFTENIIEMLMLWSLTIENCPNMETFVSNSVVHVTTDNKKPQKLTLEENF 204 (326)
Q Consensus 137 ~~L~~L~l~~c~~L~~~~~~~~~~~~~~~L~~L~l~~C~~l~~~~~~~~~~~~~~~~~L~~L~i~~~c 204 (326)
++|+.|++++. .++.++. .+..+++|+.|+++++ .++.+.+.. ...+. +|++|++ .++
T Consensus 31 ~~l~~L~L~~n-~i~~ip~---~~~~l~~L~~L~Ls~N-~i~~i~~~~-f~~l~---~L~~L~L-s~N 88 (193)
T 2wfh_A 31 RDVTELYLDGN-QFTLVPK---ELSNYKHLTLIDLSNN-RISTLSNQS-FSNMT---QLLTLIL-SYN 88 (193)
T ss_dssp TTCCEEECCSS-CCCSCCG---GGGGCTTCCEEECCSS-CCCCCCTTT-TTTCT---TCCEEEC-CSS
T ss_pred CCCCEEECCCC-cCchhHH---HhhcccCCCEEECCCC-cCCEeCHhH-ccCCC---CCCEEEC-CCC
Confidence 46666666653 3444443 4555666666666654 344442222 22233 5666665 443
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=97.65 E-value=1.8e-06 Score=71.21 Aligned_cols=107 Identities=18% Similarity=0.216 Sum_probs=54.5
Q ss_pred CCCCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccCcCcceeccccccccccCcCCCCCCCccEEecCCCcccccc
Q 020456 74 SFFNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNCDSIEEVLHLEELNADKEHISPLFPKLSELRLIDLPKLKRF 153 (326)
Q Consensus 74 ~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~ 153 (326)
..+++|++|+++++. ++.++ . +..+++|++|+++++. +..++... ..+++|+.|+++++ +++.+
T Consensus 45 ~~l~~L~~L~ls~n~-l~~l~-~--~~~l~~L~~L~l~~n~-l~~l~~~~----------~~~~~L~~L~L~~N-~l~~l 108 (198)
T 1ds9_A 45 STLKACKHLALSTNN-IEKIS-S--LSGMENLRILSLGRNL-IKKIENLD----------AVADTLEELWISYN-QIASL 108 (198)
T ss_dssp HHTTTCSEEECSEEE-ESCCC-C--HHHHTTCCEEEEEEEE-ECSCSSHH----------HHHHHCSEEEEEEE-ECCCH
T ss_pred hcCCCCCEEECCCCC-Ccccc-c--cccCCCCCEEECCCCC-cccccchh----------hcCCcCCEEECcCC-cCCcC
Confidence 356777777777763 55543 2 6677777777777753 22221100 01245666666554 34443
Q ss_pred ccccccccccccccEEeEecCCCCCccCcchhhhccCCCCCCceEEecccCc
Q 020456 154 CNFTENIIEMLMLWSLTIENCPNMETFVSNSVVHVTTDNKKPQKLTLEENFL 205 (326)
Q Consensus 154 ~~~~~~~~~~~~L~~L~l~~C~~l~~~~~~~~~~~~~~~~~L~~L~i~~~c~ 205 (326)
+ .+..+++|+.|+++++ .+..+........++ +|++|++ .++.
T Consensus 109 ~----~~~~l~~L~~L~l~~N-~i~~~~~~~~l~~l~---~L~~L~l-~~N~ 151 (198)
T 1ds9_A 109 S----GIEKLVNLRVLYMSNN-KITNWGEIDKLAALD---KLEDLLL-AGNP 151 (198)
T ss_dssp H----HHHHHHHSSEEEESEE-ECCCHHHHHHHTTTT---TCSEEEE-CSCH
T ss_pred C----ccccCCCCCEEECCCC-cCCchhHHHHHhcCC---CCCEEEe-cCCc
Confidence 3 2345566666666654 233332111122333 5666666 5443
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=97.65 E-value=8.3e-05 Score=73.59 Aligned_cols=58 Identities=14% Similarity=-0.011 Sum_probs=26.3
Q ss_pred ecccceeecccCCCcceecCCCccccCCcccEEEeccCCccccccCCCCCCCCccEEEeccc
Q 020456 228 FERMNYLTLDCLPSLTSFCLGNYALEFPSLEQVVVRQCPKMKIFSQGVLDTPMLNKVNVTEE 289 (326)
Q Consensus 228 l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~~L~~L~l~~c 289 (326)
+++|++|+|.++. ++.+|.... .+++|++|.++++ .++.+|..+..+++|++|+++++
T Consensus 269 l~~L~~L~Ls~N~-l~~lp~~~~--~l~~L~~L~L~~N-~l~~lp~~~~~l~~L~~L~L~~N 326 (727)
T 4b8c_D 269 LSNLRVLDLSHNR-LTSLPAELG--SCFQLKYFYFFDN-MVTTLPWEFGNLCNLQFLGVEGN 326 (727)
T ss_dssp GTTCCEEECTTSC-CSSCCSSGG--GGTTCSEEECCSS-CCCCCCSSTTSCTTCCCEECTTS
T ss_pred CCCCCEEeCcCCc-CCccChhhc--CCCCCCEEECCCC-CCCccChhhhcCCCccEEeCCCC
Confidence 3444444444432 333333222 4445555555443 33445544444555555555544
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=97.63 E-value=7.9e-05 Score=73.75 Aligned_cols=111 Identities=16% Similarity=0.122 Sum_probs=77.3
Q ss_pred cccCCCccEEEcccCCCcccccccCCCCCCCCCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccCcCcceeccccc
Q 020456 45 MIGFCDIEYLQLSDFPCLKEIWHGQALPVSFFNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNCDSIEEVLHLEE 124 (326)
Q Consensus 45 ~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~ 124 (326)
...+++|+.|+++++.. ..++... ..+++|++|+|+++ .++.++.. +..+++|++|+++++. +..++...+
T Consensus 220 ~~~l~~L~~L~Ls~n~l-~~l~~~~----~~l~~L~~L~Ls~N-~l~~lp~~--~~~l~~L~~L~Ls~N~-l~~lp~~~~ 290 (727)
T 4b8c_D 220 KYDDQLWHALDLSNLQI-FNISANI----FKYDFLTRLYLNGN-SLTELPAE--IKNLSNLRVLDLSHNR-LTSLPAELG 290 (727)
T ss_dssp --CCCCCCEEECTTSCC-SCCCGGG----GGCCSCSCCBCTTS-CCSCCCGG--GGGGTTCCEEECTTSC-CSSCCSSGG
T ss_pred hccCCCCcEEECCCCCC-CCCChhh----cCCCCCCEEEeeCC-cCcccChh--hhCCCCCCEEeCcCCc-CCccChhhc
Confidence 34478899999987654 3444443 46789999999988 46655433 6889999999999875 444422111
Q ss_pred cccccCcCCCCCCCccEEecCCCccccccccccccccccccccEEeEecCCCCCc
Q 020456 125 LNADKEHISPLFPKLSELRLIDLPKLKRFCNFTENIIEMLMLWSLTIENCPNMET 179 (326)
Q Consensus 125 ~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~L~~L~l~~C~~l~~ 179 (326)
.+++|+.|+|+++ .++.++. .+..+++|+.|++++++ +..
T Consensus 291 ----------~l~~L~~L~L~~N-~l~~lp~---~~~~l~~L~~L~L~~N~-l~~ 330 (727)
T 4b8c_D 291 ----------SCFQLKYFYFFDN-MVTTLPW---EFGNLCNLQFLGVEGNP-LEK 330 (727)
T ss_dssp ----------GGTTCSEEECCSS-CCCCCCS---STTSCTTCCCEECTTSC-CCS
T ss_pred ----------CCCCCCEEECCCC-CCCccCh---hhhcCCCccEEeCCCCc-cCC
Confidence 2468999999886 5677776 67888999999998864 443
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.50 E-value=3.1e-06 Score=77.03 Aligned_cols=13 Identities=31% Similarity=0.273 Sum_probs=7.3
Q ss_pred CCcccEEEeccCC
Q 020456 254 FPSLEQVVVRQCP 266 (326)
Q Consensus 254 ~~~L~~L~i~~c~ 266 (326)
.++|++|++++++
T Consensus 238 ~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 238 HPSLELLHLYFNE 250 (372)
T ss_dssp CSSCCEEECTTSS
T ss_pred CCCCCEEeccCCC
Confidence 4556666665543
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.45 E-value=0.0004 Score=66.67 Aligned_cols=122 Identities=18% Similarity=0.242 Sum_probs=86.5
Q ss_pred CCccEEEcccCCCcccccccCCCCCCCCCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccCcCcceeccccccccc
Q 020456 49 CDIEYLQLSDFPCLKEIWHGQALPVSFFNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNCDSIEEVLHLEELNAD 128 (326)
Q Consensus 49 ~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~ 128 (326)
..|+.|+++++ .+..++. . +.+++|+.|+++++ +++.++.. ++.+++|+.|+++++. +..++ .+
T Consensus 441 ~~L~~L~Ls~n-~l~~lp~-~----~~l~~L~~L~Ls~N-~l~~lp~~--~~~l~~L~~L~Ls~N~-l~~lp---~l--- 504 (567)
T 1dce_A 441 ADVRVLHLAHK-DLTVLCH-L----EQLLLVTHLDLSHN-RLRALPPA--LAALRCLEVLQASDNA-LENVD---GV--- 504 (567)
T ss_dssp TTCSEEECTTS-CCSSCCC-G----GGGTTCCEEECCSS-CCCCCCGG--GGGCTTCCEEECCSSC-CCCCG---GG---
T ss_pred cCceEEEecCC-CCCCCcC-c----cccccCcEeecCcc-cccccchh--hhcCCCCCEEECCCCC-CCCCc---cc---
Confidence 46999999976 4555443 3 57899999999998 46666543 7899999999999864 44442 11
Q ss_pred cCcCCCCCCCccEEecCCCcccccc--ccccccccccccccEEeEecCCCCCccCcc--hhhhccCCCCCCceEE
Q 020456 129 KEHISPLFPKLSELRLIDLPKLKRF--CNFTENIIEMLMLWSLTIENCPNMETFVSN--SVVHVTTDNKKPQKLT 199 (326)
Q Consensus 129 ~~~~~~~~~~L~~L~l~~c~~L~~~--~~~~~~~~~~~~L~~L~l~~C~~l~~~~~~--~~~~~~~~~~~L~~L~ 199 (326)
..+++|+.|+++++ +++.+ +. .+..+++|+.|+++++ .++..++. .+...++ +|+.|+
T Consensus 505 -----~~l~~L~~L~Ls~N-~l~~~~~p~---~l~~l~~L~~L~L~~N-~l~~~~~~~~~l~~~lp---~L~~L~ 566 (567)
T 1dce_A 505 -----ANLPRLQELLLCNN-RLQQSAAIQ---PLVSCPRLVLLNLQGN-SLCQEEGIQERLAEMLP---SVSSIL 566 (567)
T ss_dssp -----TTCSSCCEEECCSS-CCCSSSTTG---GGGGCTTCCEEECTTS-GGGGSSSCTTHHHHHCT---TCSEEE
T ss_pred -----CCCCCCcEEECCCC-CCCCCCCcH---HHhcCCCCCEEEecCC-cCCCCccHHHHHHHHCc---ccCccC
Confidence 13579999999986 46665 44 6788999999999986 45555332 2333455 888875
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=97.40 E-value=0.00093 Score=53.59 Aligned_cols=84 Identities=17% Similarity=0.136 Sum_probs=47.6
Q ss_pred CCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccCcCcceeccccccccccCcCCCCCCCccEEecCCCcccccccc
Q 020456 76 FNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNCDSIEEVLHLEELNADKEHISPLFPKLSELRLIDLPKLKRFCN 155 (326)
Q Consensus 76 ~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~ 155 (326)
.++|++|+++++. ++.+.+.. +..+++|++|+++++ .+..++.. ....+++|+.|++++. +++.++.
T Consensus 32 ~~~L~~L~Ls~N~-l~~~~~~~-~~~l~~L~~L~Ls~N-~l~~i~~~---------~~~~l~~L~~L~L~~N-~l~~l~~ 98 (174)
T 2r9u_A 32 PTDKQRLWLNNNQ-ITKLEPGV-FDHLVNLQQLYFNSN-KLTAIPTG---------VFDKLTQLTQLDLNDN-HLKSIPR 98 (174)
T ss_dssp CTTCSEEECCSSC-CCCCCTTT-TTTCTTCCEEECCSS-CCCCCCTT---------TTTTCTTCCEEECCSS-CCCCCCT
T ss_pred CCCCcEEEeCCCC-ccccCHHH-hcCCcCCCEEECCCC-CCCccChh---------HhCCcchhhEEECCCC-ccceeCH
Confidence 3777888887763 55554432 567777888887775 34333211 1112356666666653 3444443
Q ss_pred ccccccccccccEEeEecC
Q 020456 156 FTENIIEMLMLWSLTIENC 174 (326)
Q Consensus 156 ~~~~~~~~~~L~~L~l~~C 174 (326)
. .+..+++|+.|++++.
T Consensus 99 ~--~~~~l~~L~~L~L~~N 115 (174)
T 2r9u_A 99 G--AFDNLKSLTHIYLYNN 115 (174)
T ss_dssp T--TTTTCTTCSEEECCSS
T ss_pred H--HhccccCCCEEEeCCC
Confidence 1 2455667777777654
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=97.32 E-value=1.2e-05 Score=66.11 Aligned_cols=124 Identities=14% Similarity=0.151 Sum_probs=74.4
Q ss_pred CCCccEEecCCCccccccccccccccccccccEEeEecCCCCCccCcchhhhccCCCCCCceEEecccCcccceeccccc
Q 020456 136 FPKLSELRLIDLPKLKRFCNFTENIIEMLMLWSLTIENCPNMETFVSNSVVHVTTDNKKPQKLTLEENFLLADQVQPLFD 215 (326)
Q Consensus 136 ~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~L~~L~l~~C~~l~~~~~~~~~~~~~~~~~L~~L~i~~~c~~l~~~~~~~~ 215 (326)
+++|+.|+++++ .++.++ .+..+++|+.|++++| .++.++ . ....++ +|++|++ .++. ++.+..
T Consensus 47 l~~L~~L~ls~n-~l~~l~----~~~~l~~L~~L~l~~n-~l~~l~-~-~~~~~~---~L~~L~L-~~N~-l~~l~~--- 110 (198)
T 1ds9_A 47 LKACKHLALSTN-NIEKIS----SLSGMENLRILSLGRN-LIKKIE-N-LDAVAD---TLEELWI-SYNQ-IASLSG--- 110 (198)
T ss_dssp TTTCSEEECSEE-EESCCC----CHHHHTTCCEEEEEEE-EECSCS-S-HHHHHH---HCSEEEE-EEEE-CCCHHH---
T ss_pred CCCCCEEECCCC-CCcccc----ccccCCCCCEEECCCC-Cccccc-c-hhhcCC---cCCEEEC-cCCc-CCcCCc---
Confidence 568888888775 355554 4567788888888876 455542 2 222334 7888888 6663 333211
Q ss_pred cccCccccceeeecccceeecccCCCcceecCCCccccCCcccEEEeccCCccccccCC----------CCCCCCccEEE
Q 020456 216 EKVGEEVKGCIVFERMNYLTLDCLPSLTSFCLGNYALEFPSLEQVVVRQCPKMKIFSQG----------VLDTPMLNKVN 285 (326)
Q Consensus 216 ~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~----------~~~~~~L~~L~ 285 (326)
...+++|++|++.++. ++.++.......+++|++|++.+++--...|.. +..+++|++|+
T Consensus 111 ---------~~~l~~L~~L~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 111 ---------IEKLVNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp ---------HHHHHHSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred ---------cccCCCCCEEECCCCc-CCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 3345788888888753 443332011125778888888777543333321 44578888876
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=97.30 E-value=0.0015 Score=52.09 Aligned_cols=83 Identities=18% Similarity=0.143 Sum_probs=46.9
Q ss_pred CCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccCcCcceeccccccccccCcCCCCCCCccEEecCCCcccccccc
Q 020456 76 FNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNCDSIEEVLHLEELNADKEHISPLFPKLSELRLIDLPKLKRFCN 155 (326)
Q Consensus 76 ~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~ 155 (326)
.++|++|+++++ +++.+.+.. +..+++|++|+++++. +..++.. ....+++|+.|++++. +++.++.
T Consensus 29 ~~~l~~L~L~~N-~i~~~~~~~-~~~l~~L~~L~Ls~N~-l~~l~~~---------~f~~l~~L~~L~L~~N-~l~~~~~ 95 (170)
T 3g39_A 29 PTTTQVLYLYDN-QITKLEPGV-FDRLTQLTRLDLDNNQ-LTVLPAG---------VFDKLTQLTQLSLNDN-QLKSIPR 95 (170)
T ss_dssp CTTCSEEECCSS-CCCCCCTTT-TTTCTTCSEEECCSSC-CCCCCTT---------TTTTCTTCCEEECCSS-CCCCCCT
T ss_pred CCCCcEEEcCCC-cCCccChhh-hcCcccCCEEECCCCC-cCccChh---------hccCCCCCCEEECCCC-ccCEeCH
Confidence 477788888776 355554432 5667778888877753 4333210 1112356666666653 3444443
Q ss_pred ccccccccccccEEeEec
Q 020456 156 FTENIIEMLMLWSLTIEN 173 (326)
Q Consensus 156 ~~~~~~~~~~L~~L~l~~ 173 (326)
. .+..+++|+.|++++
T Consensus 96 ~--~~~~l~~L~~L~L~~ 111 (170)
T 3g39_A 96 G--AFDNLKSLTHIWLLN 111 (170)
T ss_dssp T--TTTTCTTCCEEECCS
T ss_pred H--HhcCCCCCCEEEeCC
Confidence 1 245566777777765
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=97.09 E-value=0.0019 Score=51.77 Aligned_cols=60 Identities=15% Similarity=0.252 Sum_probs=35.6
Q ss_pred eecccceeecccCCCcceecCCCccccCCcccEEEeccCCccccccCC-CCCCCCccEEEeccc
Q 020456 227 VFERMNYLTLDCLPSLTSFCLGNYALEFPSLEQVVVRQCPKMKIFSQG-VLDTPMLNKVNVTEE 289 (326)
Q Consensus 227 ~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~-~~~~~~L~~L~l~~c 289 (326)
.+++|++|++.+. .++.++..... .+++|++|++++. .++.+|.. +..+++|++|+++++
T Consensus 55 ~l~~L~~L~Ls~N-~l~~i~~~~~~-~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~L~~N 115 (174)
T 2r9u_A 55 HLVNLQQLYFNSN-KLTAIPTGVFD-KLTQLTQLDLNDN-HLKSIPRGAFDNLKSLTHIYLYNN 115 (174)
T ss_dssp TCTTCCEEECCSS-CCCCCCTTTTT-TCTTCCEEECCSS-CCCCCCTTTTTTCTTCSEEECCSS
T ss_pred CCcCCCEEECCCC-CCCccChhHhC-CcchhhEEECCCC-ccceeCHHHhccccCCCEEEeCCC
Confidence 3456666666663 45555543321 5667777777553 45556653 556777777777766
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=97.08 E-value=0.0018 Score=51.59 Aligned_cols=59 Identities=19% Similarity=0.310 Sum_probs=33.3
Q ss_pred ecccceeecccCCCcceecCCCccccCCcccEEEeccCCccccccCC-CCCCCCccEEEeccc
Q 020456 228 FERMNYLTLDCLPSLTSFCLGNYALEFPSLEQVVVRQCPKMKIFSQG-VLDTPMLNKVNVTEE 289 (326)
Q Consensus 228 l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~-~~~~~~L~~L~l~~c 289 (326)
+++|++|++.+. .++.++..... .+++|++|++++. .++.++.. +..+++|++|+++++
T Consensus 53 l~~L~~L~Ls~N-~l~~l~~~~f~-~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N 112 (170)
T 3g39_A 53 LTQLTRLDLDNN-QLTVLPAGVFD-KLTQLTQLSLNDN-QLKSIPRGAFDNLKSLTHIWLLNN 112 (170)
T ss_dssp CTTCSEEECCSS-CCCCCCTTTTT-TCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cccCCEEECCCC-CcCccChhhcc-CCCCCCEEECCCC-ccCEeCHHHhcCCCCCCEEEeCCC
Confidence 455666666653 34555443322 5667777777554 45555543 445677777777665
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.01 E-value=0.00018 Score=65.28 Aligned_cols=174 Identities=14% Similarity=0.089 Sum_probs=93.0
Q ss_pred CCCccEEEcccCCCcccccccCC-CCCCCCCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccCcCcceeccccccc
Q 020456 48 FCDIEYLQLSDFPCLKEIWHGQA-LPVSFFNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNCDSIEEVLHLEELN 126 (326)
Q Consensus 48 ~~~L~~L~l~~~~~l~~~~~~~~-l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~ 126 (326)
.++|++|+++++.--..-+.... ......++|++|++++|. +++.....+...+++|++|++++|. +... +..
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~L~~L~Ls~n~-l~~~----~~~ 144 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQ-LDPAGLRTLLPVFLRARKLGLQLNS-LGPE----ACK 144 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCC-CCHHHHHHTHHHHHTEEEEECCSSC-CCHH----HHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCC-CCHHHHHHHHHHHHhccHhhcCCCC-CCHH----HHH
Confidence 57788888887764322121110 001233688899988884 5443333345567788888888874 3211 000
Q ss_pred cccCcCCCCCCCccEEecCCCccccc-----cccccccccccccccEEeEecCCCCCccCcchhhhccCCCCCCceEEec
Q 020456 127 ADKEHISPLFPKLSELRLIDLPKLKR-----FCNFTENIIEMLMLWSLTIENCPNMETFVSNSVVHVTTDNKKPQKLTLE 201 (326)
Q Consensus 127 ~~~~~~~~~~~~L~~L~l~~c~~L~~-----~~~~~~~~~~~~~L~~L~l~~C~~l~~~~~~~~~~~~~~~~~L~~L~i~ 201 (326)
..........++|++|++++|. ++. +.. .+...++|++|++++|. +.+.....+...+..+++|++|++
T Consensus 145 ~L~~~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~---~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~L~L- 218 (372)
T 3un9_A 145 DLRDLLLHDQCQITTLRLSNNP-LTAAGVAVLME---GLAGNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQELNV- 218 (372)
T ss_dssp HHHHHHHSTTCCCCEEECCSSC-CHHHHHHHHHH---HHHTCSSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCEEEC-
T ss_pred HHHHHHHhcCCccceeeCCCCC-CChHHHHHHHH---HHhcCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCeEEC-
Confidence 0000000123588889988874 432 221 33557888999998864 554322222222222238999998
Q ss_pred ccCcccceeccccccccCccccceeeecccceeecccCC
Q 020456 202 ENFLLADQVQPLFDEKVGEEVKGCIVFERMNYLTLDCLP 240 (326)
Q Consensus 202 ~~c~~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~ 240 (326)
.+|.- +..... .....+...++|++|++.+++
T Consensus 219 s~N~i-~~~g~~------~l~~~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 219 AYNGA-GDTAAL------ALARAAREHPSLELLHLYFNE 250 (372)
T ss_dssp CSSCC-CHHHHH------HHHHHHHHCSSCCEEECTTSS
T ss_pred CCCCC-CHHHHH------HHHHHHHhCCCCCEEeccCCC
Confidence 87753 221100 011112244788999998875
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=96.94 E-value=0.0039 Score=55.50 Aligned_cols=83 Identities=12% Similarity=0.066 Sum_probs=43.4
Q ss_pred CCceEEecccCcccceeccccccccCccccceeeecccceeecccCCCcceecCCCccccCCcccEEEeccCCccccccC
Q 020456 194 KPQKLTLEENFLLADQVQPLFDEKVGEEVKGCIVFERMNYLTLDCLPSLTSFCLGNYALEFPSLEQVVVRQCPKMKIFSQ 273 (326)
Q Consensus 194 ~L~~L~i~~~c~~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~ 273 (326)
+|+.|++ .+.+.+..+.+.. ...+++|+.|+|.+. .++.++..... .+++|++|++++ ..++.+|.
T Consensus 32 ~L~~L~l-~~~n~l~~~~~~~----------~~~l~~L~~L~l~~N-~l~~~~~~~~~-~l~~L~~L~l~~-N~l~~~~~ 97 (347)
T 2ifg_A 32 NLTELYI-ENQQHLQHLELRD----------LRGLGELRNLTIVKS-GLRFVAPDAFH-FTPRLSRLNLSF-NALESLSW 97 (347)
T ss_dssp CCSEEEC-CSCSSCCEECGGG----------SCSCCCCSEEECCSS-CCCEECTTGGG-SCSCCCEEECCS-SCCSCCCS
T ss_pred CeeEEEc-cCCCCCCCcChhH----------hccccCCCEEECCCC-ccceeCHHHhc-CCcCCCEEeCCC-CccceeCH
Confidence 5666665 5444454443221 234456666666653 45555443322 566666666644 34555655
Q ss_pred CCCCCCCccEEEecccc
Q 020456 274 GVLDTPMLNKVNVTEEE 290 (326)
Q Consensus 274 ~~~~~~~L~~L~l~~c~ 290 (326)
.......|++|++.+++
T Consensus 98 ~~~~~~~L~~l~l~~N~ 114 (347)
T 2ifg_A 98 KTVQGLSLQELVLSGNP 114 (347)
T ss_dssp TTTCSCCCCEEECCSSC
T ss_pred HHcccCCceEEEeeCCC
Confidence 43333337777776653
|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=96.94 E-value=0.065 Score=48.50 Aligned_cols=56 Identities=11% Similarity=0.117 Sum_probs=29.9
Q ss_pred cccceeecccCCCcceecCCCccccCCcccEEEeccCCccccccC-CCCCCCCccEEEeccc
Q 020456 229 ERMNYLTLDCLPSLTSFCLGNYALEFPSLEQVVVRQCPKMKIFSQ-GVLDTPMLNKVNVTEE 289 (326)
Q Consensus 229 ~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~-~~~~~~~L~~L~l~~c 289 (326)
.+|+.+.+. .+++.+..... ..|.+|+.+.+.. .++.+.. +...|++|+++.+...
T Consensus 320 ~~L~~i~lp--~~v~~I~~~aF-~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 320 TSLVSIDLP--YLVEEIGKRSF-RGCTSLSNINFPL--SLRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp TTCCEECCC--TTCCEECTTTT-TTCTTCCEECCCT--TCCEECTTTBTTCTTCCEEEEEGG
T ss_pred CCCCEEEeC--CcccEEhHHhc-cCCCCCCEEEECc--cccEehHHHhhCCCCCCEEEECCC
Confidence 344444442 12444443332 2567777776633 2555554 4446778888877543
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=96.66 E-value=0.0057 Score=54.38 Aligned_cols=85 Identities=18% Similarity=0.148 Sum_probs=56.3
Q ss_pred CCCccEEecCCCccccccccccccccccccccEEeEecCCCCCccCcchhhhccCCCCCCceEEecccCcccceeccccc
Q 020456 136 FPKLSELRLIDLPKLKRFCNFTENIIEMLMLWSLTIENCPNMETFVSNSVVHVTTDNKKPQKLTLEENFLLADQVQPLFD 215 (326)
Q Consensus 136 ~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~L~~L~l~~C~~l~~~~~~~~~~~~~~~~~L~~L~i~~~c~~l~~~~~~~~ 215 (326)
+++|+.|+|++...++.++.. .+..+++|+.|+++++ ++..+++.. +..+. +|++|++ .+. .+..+....
T Consensus 30 ~~~L~~L~l~~~n~l~~~~~~--~~~~l~~L~~L~l~~N-~l~~~~~~~-~~~l~---~L~~L~l-~~N-~l~~~~~~~- 99 (347)
T 2ifg_A 30 AENLTELYIENQQHLQHLELR--DLRGLGELRNLTIVKS-GLRFVAPDA-FHFTP---RLSRLNL-SFN-ALESLSWKT- 99 (347)
T ss_dssp CSCCSEEECCSCSSCCEECGG--GSCSCCCCSEEECCSS-CCCEECTTG-GGSCS---CCCEEEC-CSS-CCSCCCSTT-
T ss_pred CCCeeEEEccCCCCCCCcChh--HhccccCCCEEECCCC-ccceeCHHH-hcCCc---CCCEEeC-CCC-ccceeCHHH-
Confidence 357899999877778877642 4677899999999885 677774433 33455 8999998 664 455443221
Q ss_pred cccCccccceeeecccceeecccCC
Q 020456 216 EKVGEEVKGCIVFERMNYLTLDCLP 240 (326)
Q Consensus 216 ~~~~~~~~~~~~l~~L~~L~l~~c~ 240 (326)
... .+|+.|++.+.+
T Consensus 100 ---------~~~-~~L~~l~l~~N~ 114 (347)
T 2ifg_A 100 ---------VQG-LSLQELVLSGNP 114 (347)
T ss_dssp ---------TCS-CCCCEEECCSSC
T ss_pred ---------ccc-CCceEEEeeCCC
Confidence 111 238888887743
|
| >4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} | Back alignment and structure |
|---|
Probab=96.63 E-value=0.2 Score=45.18 Aligned_cols=56 Identities=11% Similarity=0.222 Sum_probs=34.7
Q ss_pred cccceeecccCCCcceecCCCccccCCcccEEEeccCCccccccC-CCCCCCCccEEEeccc
Q 020456 229 ERMNYLTLDCLPSLTSFCLGNYALEFPSLEQVVVRQCPKMKIFSQ-GVLDTPMLNKVNVTEE 289 (326)
Q Consensus 229 ~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~-~~~~~~~L~~L~l~~c 289 (326)
.+|+.+.|.. +++.+...... .|.+|+.+.+-. .++.+.. ++..|++|+.+.+.+.
T Consensus 311 ~~L~~i~lp~--~v~~I~~~aF~-~C~~L~~i~ip~--sv~~I~~~aF~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 311 ISLKSIDIPE--GITQILDDAFA-GCEQLERIAIPS--SVTKIPESAFSNCTALNNIEYSGS 367 (394)
T ss_dssp TTCCEEECCT--TCCEECTTTTT-TCTTCCEEEECT--TCCBCCGGGGTTCTTCCEEEESSC
T ss_pred CCcCEEEeCC--cccEehHhHhh-CCCCCCEEEECc--ccCEEhHhHhhCCCCCCEEEECCc
Confidence 4566665542 35555443332 678888888842 3555554 4457889999888764
|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=96.48 E-value=0.036 Score=50.21 Aligned_cols=52 Identities=12% Similarity=0.221 Sum_probs=31.8
Q ss_pred ecccceeecccCCCcceecCCCccccCCcccEEEeccCCccccccCCCCCCCCccEE
Q 020456 228 FERMNYLTLDCLPSLTSFCLGNYALEFPSLEQVVVRQCPKMKIFSQGVLDTPMLNKV 284 (326)
Q Consensus 228 l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~~L~~L 284 (326)
+.+|+.+.+.. +++.+...... .|++|+++.+.. .++........+++|+.+
T Consensus 342 c~~L~~i~lp~--~l~~I~~~aF~-~C~~L~~i~lp~--~~~~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 342 CTSLSNINFPL--SLRKIGANAFQ-GCINLKKVELPK--RLEQYRYDFEDTTKFKWI 393 (394)
T ss_dssp CTTCCEECCCT--TCCEECTTTBT-TCTTCCEEEEEG--GGGGGGGGBCTTCEEEEE
T ss_pred CCCCCEEEECc--cccEehHHHhh-CCCCCCEEEECC--CCEEhhheecCCCCCcEE
Confidence 35666666642 35566554433 789999998854 233333455567888765
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=95.22 E-value=0.0021 Score=52.00 Aligned_cols=36 Identities=11% Similarity=0.012 Sum_probs=21.3
Q ss_pred cCCcccEEEe--ccCCcccc-----ccCCCCCCCCccEEEeccc
Q 020456 253 EFPSLEQVVV--RQCPKMKI-----FSQGVLDTPMLNKVNVTEE 289 (326)
Q Consensus 253 ~~~~L~~L~i--~~c~~l~~-----l~~~~~~~~~L~~L~l~~c 289 (326)
..++|++|++ .++ .+.. +...+...++|++|++++|
T Consensus 119 ~n~~L~~L~L~~~~N-~i~~~g~~~l~~~L~~n~~L~~L~L~~n 161 (185)
T 1io0_A 119 SNTSLIELRIDNQSQ-PLGNNVEMEIANMLEKNTTLLKFGYHFT 161 (185)
T ss_dssp GCSSCCEEECCCCSS-CCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred hCCCceEEEecCCCC-CCCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence 3456777777 333 2322 3334444678899998877
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=94.58 E-value=0.017 Score=46.56 Aligned_cols=65 Identities=12% Similarity=0.114 Sum_probs=34.0
Q ss_pred cccCCCccEEEcccCCCccc-----ccccCCCCCCCCCCccEEEEecCCCCCcCCch---hHHhhCCCCCEEEEccCc
Q 020456 45 MIGFCDIEYLQLSDFPCLKE-----IWHGQALPVSFFNNLEELEVDDCTNMSSAIPA---NLLRCLNNLRCLEVRNCD 114 (326)
Q Consensus 45 ~~~~~~L~~L~l~~~~~l~~-----~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~---~~~~~l~~L~~L~l~~c~ 114 (326)
+...++|++|++.++..+.. +.... ...++|++|++++|. +.+.... ..+...++|++|++++|.
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L----~~~~~L~~L~Ls~n~-i~~~g~~~l~~~L~~n~~L~~L~L~~N~ 104 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEAL----KTNTYVKKFSIVGTR-SNDPVAFALAEMLKVNNTLKSLNVESNF 104 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHH----TTCCSCCEEECTTSC-CCHHHHHHHHHHHHHCSSCCEEECCSSC
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHH----HhCCCcCEEECcCCC-CChHHHHHHHHHHHhCCCcCEEECcCCc
Confidence 33467788888877633332 11111 234677777777764 4332111 123445667777666653
|
| >4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} | Back alignment and structure |
|---|
Probab=94.46 E-value=2.5 Score=37.83 Aligned_cols=103 Identities=10% Similarity=0.126 Sum_probs=50.6
Q ss_pred cccccccEEeEecCCCCCccCcchhhhccCCCCCCceEEecccCcccceeccccccccCccccceeeecccceeecccCC
Q 020456 161 IEMLMLWSLTIENCPNMETFVSNSVVHVTTDNKKPQKLTLEENFLLADQVQPLFDEKVGEEVKGCIVFERMNYLTLDCLP 240 (326)
Q Consensus 161 ~~~~~L~~L~l~~C~~l~~~~~~~~~~~~~~~~~L~~L~i~~~c~~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~ 240 (326)
..+++|+++.+.. .++.+ +...+..+. +|+++.| .. +++.+.... -..+.+|+.+.|..
T Consensus 285 ~~c~~L~~i~l~~--~i~~I-~~~aF~~c~---~L~~i~l-p~--~v~~I~~~a----------F~~C~~L~~i~ip~-- 343 (394)
T 4gt6_A 285 MNCPALQDIEFSS--RITEL-PESVFAGCI---SLKSIDI-PE--GITQILDDA----------FAGCEQLERIAIPS-- 343 (394)
T ss_dssp TTCTTCCEEECCT--TCCEE-CTTTTTTCT---TCCEEEC-CT--TCCEECTTT----------TTTCTTCCEEEECT--
T ss_pred ccccccccccCCC--ccccc-CceeecCCC---CcCEEEe-CC--cccEehHhH----------hhCCCCCCEEEECc--
Confidence 3456666666642 44444 233344555 7777777 43 244432221 11345677777642
Q ss_pred CcceecCCCccccCCcccEEEeccCCccccccCCCCCCCCccEEEecc
Q 020456 241 SLTSFCLGNYALEFPSLEQVVVRQCPKMKIFSQGVLDTPMLNKVNVTE 288 (326)
Q Consensus 241 ~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~~L~~L~l~~ 288 (326)
+++.+..... ..|++|+.+.+.+.... . .....+..|+.+.+..
T Consensus 344 sv~~I~~~aF-~~C~~L~~i~~~~~~~~--~-~~~~~~~~L~~i~i~~ 387 (394)
T 4gt6_A 344 SVTKIPESAF-SNCTALNNIEYSGSRSQ--W-NAISTDSGLQNLPVAP 387 (394)
T ss_dssp TCCBCCGGGG-TTCTTCCEEEESSCHHH--H-HTCBCCCCC-------
T ss_pred ccCEEhHhHh-hCCCCCCEEEECCceee--h-hhhhccCCCCEEEeCC
Confidence 3555544333 37889999988653211 1 2334567777777643
|
| >4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=94.10 E-value=3 Score=37.00 Aligned_cols=54 Identities=9% Similarity=0.207 Sum_probs=26.8
Q ss_pred cccceeecccCCCcceecCCCccccCCcccEEEeccCCccccccC-CCCCCCCccEEEe
Q 020456 229 ERMNYLTLDCLPSLTSFCLGNYALEFPSLEQVVVRQCPKMKIFSQ-GVLDTPMLNKVNV 286 (326)
Q Consensus 229 ~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~-~~~~~~~L~~L~l 286 (326)
.+|+.+.+.+ ..++.+...... .|.+|+.+.+-+ .++.+.. +...|.+|+++.+
T Consensus 286 ~~L~~i~l~~-~~i~~I~~~aF~-~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~i 340 (379)
T 4h09_A 286 SNLTKVVMDN-SAIETLEPRVFM-DCVKLSSVTLPT--ALKTIQVYAFKNCKALSTISY 340 (379)
T ss_dssp TTCCEEEECC-TTCCEECTTTTT-TCTTCCEEECCT--TCCEECTTTTTTCTTCCCCCC
T ss_pred cccccccccc-cccceehhhhhc-CCCCCCEEEcCc--cccEEHHHHhhCCCCCCEEEE
Confidence 4455554432 123444333322 566777776632 3444444 3345666766665
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=91.61 E-value=0.26 Score=42.19 Aligned_cols=36 Identities=14% Similarity=0.231 Sum_probs=16.7
Q ss_pred CCCccEEEEecCCCCCcCCc-hhHHhhCCCCCEEEEcc
Q 020456 76 FNNLEELEVDDCTNMSSAIP-ANLLRCLNNLRCLEVRN 112 (326)
Q Consensus 76 ~~~L~~L~l~~c~~l~~~~~-~~~~~~l~~L~~L~l~~ 112 (326)
+++|+.|++++. +++.+.. ...++.+++|+.|++++
T Consensus 169 l~~L~~L~Ls~N-~l~~l~~l~~~~~~l~~L~~L~Ls~ 205 (267)
T 3rw6_A 169 IPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSG 205 (267)
T ss_dssp CTTCCEEECTTS-CCCCCGGGTTHHHHSTTCCEEECTT
T ss_pred CCCCCEEECCCC-CCCCCccchhHHhhCCCCCEEECCC
Confidence 455555555554 2333221 11234555555555554
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=91.14 E-value=0.24 Score=42.37 Aligned_cols=91 Identities=20% Similarity=0.127 Sum_probs=52.0
Q ss_pred cCCCccEEEcccCCCcccccccCCCCCCCCCCccEEEEecCCCCCcCCchhHHhhCC--CCCEEEEccCcCcceeccccc
Q 020456 47 GFCDIEYLQLSDFPCLKEIWHGQALPVSFFNNLEELEVDDCTNMSSAIPANLLRCLN--NLRCLEVRNCDSIEEVLHLEE 124 (326)
Q Consensus 47 ~~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~--~L~~L~l~~c~~l~~l~~~~~ 124 (326)
.+++|++|++++.. +..+..-. -....+++|+.|++++. ++++... +..+. +|++|.+.+++--..++....
T Consensus 168 ~l~~L~~L~Ls~N~-l~~l~~l~-~~~~~l~~L~~L~Ls~N-~i~~~~~---l~~l~~l~L~~L~L~~Npl~~~~~~~~~ 241 (267)
T 3rw6_A 168 NIPELLSLNLSNNR-LYRLDDMS-SIVQKAPNLKILNLSGN-ELKSERE---LDKIKGLKLEELWLDGNSLCDTFRDQST 241 (267)
T ss_dssp HCTTCCEEECTTSC-CCCCGGGT-THHHHSTTCCEEECTTS-CCCSGGG---GGGGTTSCCSEEECTTSTTGGGCSSHHH
T ss_pred hCCCCCEEECCCCC-CCCCccch-hHHhhCCCCCEEECCCC-ccCCchh---hhhcccCCcceEEccCCcCccccCcchh
Confidence 48899999998654 33221100 00136899999999887 4555422 33444 899999998774322211000
Q ss_pred cccccCcCCCCCCCccEEecCC
Q 020456 125 LNADKEHISPLFPKLSELRLID 146 (326)
Q Consensus 125 ~~~~~~~~~~~~~~L~~L~l~~ 146 (326)
. ...+...||+|+.|+=..
T Consensus 242 y---~~~il~~~P~L~~LDg~~ 260 (267)
T 3rw6_A 242 Y---ISAIRERFPKLLRLDGHE 260 (267)
T ss_dssp H---HHHHHHHCTTCCEESSCB
T ss_pred H---HHHHHHHCcccCeECCcC
Confidence 0 011223578998887543
|
| >4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=82.94 E-value=24 Score=30.96 Aligned_cols=56 Identities=13% Similarity=0.175 Sum_probs=34.0
Q ss_pred cccceeecccCCCcceecCCCccccCCcccEEEeccCCccccccC-CCCCCCCccEEEecc
Q 020456 229 ERMNYLTLDCLPSLTSFCLGNYALEFPSLEQVVVRQCPKMKIFSQ-GVLDTPMLNKVNVTE 288 (326)
Q Consensus 229 ~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~-~~~~~~~L~~L~l~~ 288 (326)
.+|+.+.+. .+++.+...... .|++|+++.+.+ ..++.++. ....|.+|+++.+..
T Consensus 263 ~~l~~i~l~--~~i~~i~~~aF~-~c~~L~~i~l~~-~~i~~I~~~aF~~c~~L~~i~lp~ 319 (379)
T 4h09_A 263 TALKTLNFY--AKVKTVPYLLCS-GCSNLTKVVMDN-SAIETLEPRVFMDCVKLSSVTLPT 319 (379)
T ss_dssp TTCCEEEEC--CCCSEECTTTTT-TCTTCCEEEECC-TTCCEECTTTTTTCTTCCEEECCT
T ss_pred ehhcccccc--ccceeccccccc-cccccccccccc-cccceehhhhhcCCCCCCEEEcCc
Confidence 345555443 234455443332 788999998843 34555655 455788999998843
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 326 | |||
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.47 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.45 | |
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 99.26 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 99.23 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 99.21 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 99.15 | |
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 99.1 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.04 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 99.04 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 99.03 | |
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 99.01 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 98.98 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 98.98 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 98.95 | |
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 98.95 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 98.93 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 98.92 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 98.9 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 98.88 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 98.84 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 98.71 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 98.58 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 98.43 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 98.07 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 97.92 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 97.92 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 97.91 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 97.84 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 97.8 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 97.44 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 97.43 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 97.34 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 97.33 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 96.71 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 95.92 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 95.57 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 93.37 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 92.78 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 92.21 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 91.81 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 91.55 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 83.96 |
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.47 E-value=2.8e-15 Score=130.15 Aligned_cols=15 Identities=13% Similarity=0.476 Sum_probs=6.2
Q ss_pred CCcccEEEeccCCcc
Q 020456 254 FPSLEQVVVRQCPKM 268 (326)
Q Consensus 254 ~~~L~~L~i~~c~~l 268 (326)
+++|++|.+++|..+
T Consensus 199 ~~~L~~L~L~~C~~i 213 (284)
T d2astb2 199 LNYLQHLSLSRCYDI 213 (284)
T ss_dssp CTTCCEEECTTCTTC
T ss_pred cCcCCEEECCCCCCC
Confidence 344444444444433
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.45 E-value=3.2e-14 Score=123.35 Aligned_cols=165 Identities=16% Similarity=0.155 Sum_probs=74.0
Q ss_pred CCCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccCcCcceeccccccccccCcCCCCCCCccEEecCCCccccccc
Q 020456 75 FFNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNCDSIEEVLHLEELNADKEHISPLFPKLSELRLIDLPKLKRFC 154 (326)
Q Consensus 75 ~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~ 154 (326)
.+++|++|.+.+|+ +++..... +..+++|++|++++|..+.+. +.. .+...+|+|++|++++|..+..-.
T Consensus 69 ~c~~L~~L~L~~~~-l~~~~~~~-l~~~~~L~~L~Ls~c~~itd~----~l~----~l~~~~~~L~~L~ls~c~~~~~~~ 138 (284)
T d2astb2 69 QCSKLQNLSLEGLR-LSDPIVNT-LAKNSNLVRLNLSGCSGFSEF----ALQ----TLLSSCSRLDELNLSWCFDFTEKH 138 (284)
T ss_dssp TBCCCSEEECTTCB-CCHHHHHH-HTTCTTCSEEECTTCBSCCHH----HHH----HHHHHCTTCCEEECCCCTTCCHHH
T ss_pred hCCCcccccccccC-CCcHHHHH-HhcCCCCcCcccccccccccc----ccc----hhhHHHHhcccccccccccccccc
Confidence 45566666666553 33322222 344556666666665544321 000 000123456666666655443210
Q ss_pred cccccc-cccccccEEeEecCC-CCCccCcchhhhccCCCCCCceEEecccCcccceeccccccccCccccceeeecccc
Q 020456 155 NFTENI-IEMLMLWSLTIENCP-NMETFVSNSVVHVTTDNKKPQKLTLEENFLLADQVQPLFDEKVGEEVKGCIVFERMN 232 (326)
Q Consensus 155 ~~~~~~-~~~~~L~~L~l~~C~-~l~~~~~~~~~~~~~~~~~L~~L~i~~~c~~l~~~~~~~~~~~~~~~~~~~~l~~L~ 232 (326)
... .+ ..+++|++|.+++|. .+++.....++..++ +|++|++ .+|..+++-... .+..+++|+
T Consensus 139 ~~~-~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~---~L~~L~L-~~~~~itd~~~~----------~l~~~~~L~ 203 (284)
T d2astb2 139 VQV-AVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCP---NLVHLDL-SDSVMLKNDCFQ----------EFFQLNYLQ 203 (284)
T ss_dssp HHH-HHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCT---TCSEEEC-TTCTTCCGGGGG----------GGGGCTTCC
T ss_pred chh-hhcccccccchhhhcccccccccccccccccccc---ccccccc-ccccCCCchhhh----------hhcccCcCC
Confidence 000 01 113456666666553 233332233334444 6666666 666554422111 022345666
Q ss_pred eeecccCCCcceecCCCccccCCcccEEEeccC
Q 020456 233 YLTLDCLPSLTSFCLGNYALEFPSLEQVVVRQC 265 (326)
Q Consensus 233 ~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c 265 (326)
+|++.+|+.++........ .+|+|+.|++++|
T Consensus 204 ~L~L~~C~~i~~~~l~~L~-~~~~L~~L~l~~~ 235 (284)
T d2astb2 204 HLSLSRCYDIIPETLLELG-EIPTLKTLQVFGI 235 (284)
T ss_dssp EEECTTCTTCCGGGGGGGG-GCTTCCEEECTTS
T ss_pred EEECCCCCCCChHHHHHHh-cCCCCCEEeeeCC
Confidence 6666666655443322221 4566666666665
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=99.26 E-value=4.8e-11 Score=104.11 Aligned_cols=237 Identities=14% Similarity=0.018 Sum_probs=130.2
Q ss_pred CCccEEEcccCCCcc--cccccCCCCCCCCCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccCcCcceeccccccc
Q 020456 49 CDIEYLQLSDFPCLK--EIWHGQALPVSFFNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNCDSIEEVLHLEELN 126 (326)
Q Consensus 49 ~~L~~L~l~~~~~l~--~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~ 126 (326)
.+++.|++.++.--. .++... +.+++|++|++++|.+++...|.. +.++++|++|+++++.. ..+....
T Consensus 50 ~~v~~L~L~~~~l~g~~~lp~~l----~~L~~L~~L~Ls~~N~l~g~iP~~-i~~L~~L~~L~Ls~N~l-~~~~~~~--- 120 (313)
T d1ogqa_ 50 YRVNNLDLSGLNLPKPYPIPSSL----ANLPYLNFLYIGGINNLVGPIPPA-IAKLTQLHYLYITHTNV-SGAIPDF--- 120 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGG----GGCTTCSEEEEEEETTEESCCCGG-GGGCTTCSEEEEEEECC-EEECCGG---
T ss_pred EEEEEEECCCCCCCCCCCCChHH----hcCccccccccccccccccccccc-cccccccchhhhccccc-ccccccc---
Confidence 357778887653322 333333 567888888888776665444433 67788888888887642 2221110
Q ss_pred cccCcCCCCCCCccEEecCCCccccccccccccccccccccEEeEecCCCCCccCcchhhhccCCCCCCceEEecccCcc
Q 020456 127 ADKEHISPLFPKLSELRLIDLPKLKRFCNFTENIIEMLMLWSLTIENCPNMETFVSNSVVHVTTDNKKPQKLTLEENFLL 206 (326)
Q Consensus 127 ~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~L~~L~l~~C~~l~~~~~~~~~~~~~~~~~L~~L~i~~~c~~ 206 (326)
....++|+.+++..+.....++. .+..+++|+.++++++.-...+ +..+..... .++.+.+ ..+ .
T Consensus 121 ------~~~~~~L~~l~l~~N~~~~~~p~---~l~~l~~L~~l~l~~n~l~~~i-p~~~~~l~~---l~~~l~~-~~n-~ 185 (313)
T d1ogqa_ 121 ------LSQIKTLVTLDFSYNALSGTLPP---SISSLPNLVGITFDGNRISGAI-PDSYGSFSK---LFTSMTI-SRN-R 185 (313)
T ss_dssp ------GGGCTTCCEEECCSSEEESCCCG---GGGGCTTCCEEECCSSCCEEEC-CGGGGCCCT---TCCEEEC-CSS-E
T ss_pred ------ccchhhhcccccccccccccCch---hhccCcccceeecccccccccc-ccccccccc---ccccccc-ccc-c
Confidence 11234677777777665555554 5666777777777765322222 333322221 2244443 222 2
Q ss_pred cceecccc-------------ccccCccccceeeecccceeecccCCCcceecCCCccccCCcccEEEeccCCccccccC
Q 020456 207 ADQVQPLF-------------DEKVGEEVKGCIVFERMNYLTLDCLPSLTSFCLGNYALEFPSLEQVVVRQCPKMKIFSQ 273 (326)
Q Consensus 207 l~~~~~~~-------------~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~ 273 (326)
++...+.. ....+........+++++.+++.++..-..++ ... .+++|++|+++++.-...+|.
T Consensus 186 l~~~~~~~~~~l~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~--~~~~L~~L~Ls~N~l~g~iP~ 262 (313)
T d1ogqa_ 186 LTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVG--LSKNLNGLDLRNNRIYGTLPQ 262 (313)
T ss_dssp EEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGG-GCC--CCTTCCEEECCSSCCEECCCG
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccc--cccccccccCccCeecccCCh
Confidence 22111110 00011111113345678888887765333332 222 578999999988765547898
Q ss_pred CCCCCCCccEEEeccccCCCCccccccCchHHHHHHHHHhhh
Q 020456 274 GVLDTPMLNKVNVTEEEKDDDDEGCWEGNLNDTIKQLFNEIV 315 (326)
Q Consensus 274 ~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~l~~l~i~~~ 315 (326)
.+..+++|++|+++++. +. +.++. ...+.+|+.+.+.+.
T Consensus 263 ~l~~L~~L~~L~Ls~N~-l~-g~iP~-~~~L~~L~~l~l~~N 301 (313)
T d1ogqa_ 263 GLTQLKFLHSLNVSFNN-LC-GEIPQ-GGNLQRFDVSAYANN 301 (313)
T ss_dssp GGGGCTTCCEEECCSSE-EE-EECCC-STTGGGSCGGGTCSS
T ss_pred HHhCCCCCCEEECcCCc-cc-ccCCC-cccCCCCCHHHhCCC
Confidence 88889999999999873 21 23332 233455655555543
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.23 E-value=6.6e-10 Score=96.27 Aligned_cols=59 Identities=24% Similarity=0.251 Sum_probs=29.4
Q ss_pred CCccEEEcccCCCcccccccCCCCCCCCCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccC
Q 020456 49 CDIEYLQLSDFPCLKEIWHGQALPVSFFNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNC 113 (326)
Q Consensus 49 ~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c 113 (326)
+++++|+++++ .++.++... ...+++|++|++.+|. +..+.+.. +..+++|++|+++++
T Consensus 31 ~~l~~L~Ls~N-~i~~l~~~~---f~~l~~L~~L~l~~n~-~~~i~~~~-f~~l~~L~~L~l~~n 89 (305)
T d1xkua_ 31 PDTALLDLQNN-KITEIKDGD---FKNLKNLHTLILINNK-ISKISPGA-FAPLVKLERLYLSKN 89 (305)
T ss_dssp TTCCEEECCSS-CCCCBCTTT---TTTCTTCCEEECCSSC-CCCBCTTT-TTTCTTCCEEECCSS
T ss_pred CCCCEEECcCC-cCCCcChhH---hhcccccccccccccc-ccccchhh-hhCCCccCEecccCC
Confidence 45666666654 344433321 1345566666666654 33333322 445666666666554
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.21 E-value=2.4e-10 Score=97.39 Aligned_cols=176 Identities=14% Similarity=0.122 Sum_probs=125.1
Q ss_pred CCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccCcCcceeccccccccccCcCCCCCCCccEEecCCCccccccccc
Q 020456 77 NNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNCDSIEEVLHLEELNADKEHISPLFPKLSELRLIDLPKLKRFCNF 156 (326)
Q Consensus 77 ~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~ 156 (326)
+++++|+++++ +++.+++. .+..+++|++|+++++ .++.+... ..+++|+.|+++++ +++.++.
T Consensus 31 ~~l~~L~Ls~N-~i~~l~~~-~f~~l~~L~~L~L~~N-~l~~l~~~-----------~~l~~L~~L~Ls~N-~l~~~~~- 94 (266)
T d1p9ag_ 31 KDTTILHLSEN-LLYTFSLA-TLMPYTRLTQLNLDRA-ELTKLQVD-----------GTLPVLGTLDLSHN-QLQSLPL- 94 (266)
T ss_dssp TTCCEEECTTS-CCSEEEGG-GGTTCTTCCEEECTTS-CCCEEECC-----------SCCTTCCEEECCSS-CCSSCCC-
T ss_pred cCCCEEECcCC-cCCCcCHH-Hhhccccccccccccc-cccccccc-----------cccccccccccccc-ccccccc-
Confidence 68999999987 46665543 3678999999999987 45555321 13578999999886 4665554
Q ss_pred cccccccccccEEeEecCCCCCccCcchhhhccCCCCCCceEEecccCcccceeccccccccCccccceeeecccceeec
Q 020456 157 TENIIEMLMLWSLTIENCPNMETFVSNSVVHVTTDNKKPQKLTLEENFLLADQVQPLFDEKVGEEVKGCIVFERMNYLTL 236 (326)
Q Consensus 157 ~~~~~~~~~L~~L~l~~C~~l~~~~~~~~~~~~~~~~~L~~L~i~~~c~~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l 236 (326)
.+..+++|+.|+++++. +..+... ....+. +++.|.+ .++. +..+.+.. ...++.|+.+++
T Consensus 95 --~~~~l~~L~~L~l~~~~-~~~~~~~-~~~~l~---~l~~L~l-~~n~-l~~l~~~~----------~~~l~~l~~l~l 155 (266)
T d1p9ag_ 95 --LGQTLPALTVLDVSFNR-LTSLPLG-ALRGLG---ELQELYL-KGNE-LKTLPPGL----------LTPTPKLEKLSL 155 (266)
T ss_dssp --CTTTCTTCCEEECCSSC-CCCCCSS-TTTTCT---TCCEEEC-TTSC-CCCCCTTT----------TTTCTTCCEEEC
T ss_pred --ccccccccccccccccc-cceeecc-cccccc---ccccccc-cccc-cceecccc----------ccccccchhccc
Confidence 56778999999998864 4444332 223444 8999998 6653 44443221 224578999999
Q ss_pred ccCCCcceecCCCccccCCcccEEEeccCCccccccCCCCCCCCccEEEecccc
Q 020456 237 DCLPSLTSFCLGNYALEFPSLEQVVVRQCPKMKIFSQGVLDTPMLNKVNVTEEE 290 (326)
Q Consensus 237 ~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~~L~~L~l~~c~ 290 (326)
.++ +++.++..... .+++|++|++++. .++.+|.++..+++|+.|++++++
T Consensus 156 ~~N-~l~~~~~~~~~-~l~~L~~L~Ls~N-~L~~lp~~~~~~~~L~~L~L~~Np 206 (266)
T d1p9ag_ 156 ANN-NLTELPAGLLN-GLENLDTLLLQEN-SLYTIPKGFFGSHLLPFAFLHGNP 206 (266)
T ss_dssp TTS-CCSCCCTTTTT-TCTTCCEEECCSS-CCCCCCTTTTTTCCCSEEECCSCC
T ss_pred ccc-cccccCccccc-cccccceeecccC-CCcccChhHCCCCCCCEEEecCCC
Confidence 885 67777665433 6899999999886 488899988889999999998764
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=99.15 E-value=3.7e-10 Score=93.73 Aligned_cols=187 Identities=19% Similarity=0.245 Sum_probs=121.2
Q ss_pred CCCccEEEcccCCCcccccccCCCCCCCCCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccCcCcceecccccccc
Q 020456 48 FCDIEYLQLSDFPCLKEIWHGQALPVSFFNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNCDSIEEVLHLEELNA 127 (326)
Q Consensus 48 ~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~ 127 (326)
+.+|+.|.+.++. ++.+ .+. ..+++|++|+++++. ++...+ +..+++|+++.+.++. ++.+...
T Consensus 40 l~~L~~L~l~~~~-i~~l-~~l----~~l~~L~~L~ls~n~-i~~~~~---l~~l~~l~~l~~~~n~-~~~i~~l----- 103 (227)
T d1h6ua2 40 LDGITTLSAFGTG-VTTI-EGV----QYLNNLIGLELKDNQ-ITDLAP---LKNLTKITELELSGNP-LKNVSAI----- 103 (227)
T ss_dssp HHTCCEEECTTSC-CCCC-TTG----GGCTTCCEEECCSSC-CCCCGG---GTTCCSCCEEECCSCC-CSCCGGG-----
T ss_pred cCCcCEEECCCCC-CCcc-hhH----hcCCCCcEeecCCce-eecccc---cccccccccccccccc-ccccccc-----
Confidence 6788888888764 4443 222 568899999998874 555443 5678888888888764 3333111
Q ss_pred ccCcCCCCCCCccEEecCCCccccccccccccccccccccEEeEecCCCCCccCcchhhhccCCCCCCceEEecccCccc
Q 020456 128 DKEHISPLFPKLSELRLIDLPKLKRFCNFTENIIEMLMLWSLTIENCPNMETFVSNSVVHVTTDNKKPQKLTLEENFLLA 207 (326)
Q Consensus 128 ~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~L~~L~l~~C~~l~~~~~~~~~~~~~~~~~L~~L~i~~~c~~l 207 (326)
..+++|+.+.+.++.... +. .+...+.++.+.+.+|. +....+ ..... +|++|.+ .+|..
T Consensus 104 ------~~l~~L~~l~l~~~~~~~-~~----~~~~~~~~~~l~~~~~~-~~~~~~---~~~~~---~L~~L~l-~~n~~- 163 (227)
T d1h6ua2 104 ------AGLQSIKTLDLTSTQITD-VT----PLAGLSNLQVLYLDLNQ-ITNISP---LAGLT---NLQYLSI-GNAQV- 163 (227)
T ss_dssp ------TTCTTCCEEECTTSCCCC-CG----GGTTCTTCCEEECCSSC-CCCCGG---GGGCT---TCCEEEC-CSSCC-
T ss_pred ------cccccccccccccccccc-cc----hhccccchhhhhchhhh-hchhhh---hcccc---ccccccc-ccccc-
Confidence 124688888887765332 21 23446777888887653 322211 22334 8999988 76642
Q ss_pred ceeccccccccCccccceeeecccceeecccCCCcceecCCCccccCCcccEEEeccCCccccccCCCCCCCCccEEEec
Q 020456 208 DQVQPLFDEKVGEEVKGCIVFERMNYLTLDCLPSLTSFCLGNYALEFPSLEQVVVRQCPKMKIFSQGVLDTPMLNKVNVT 287 (326)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~~L~~L~l~ 287 (326)
....+ ...+++|+.|++.++ .++.++. . ..+++|++|++++| .++.++. +..+++|++|+++
T Consensus 164 ~~~~~------------l~~l~~L~~L~Ls~n-~l~~l~~--l-~~l~~L~~L~Ls~N-~lt~i~~-l~~l~~L~~L~ls 225 (227)
T d1h6ua2 164 SDLTP------------LANLSKLTTLKADDN-KISDISP--L-ASLPNLIEVHLKNN-QISDVSP-LANTSNLFIVTLT 225 (227)
T ss_dssp CCCGG------------GTTCTTCCEEECCSS-CCCCCGG--G-GGCTTCCEEECTTS-CCCBCGG-GTTCTTCCEEEEE
T ss_pred ccchh------------hcccccceecccCCC-ccCCChh--h-cCCCCCCEEECcCC-cCCCCcc-cccCCCCCEEEee
Confidence 22211 235688999999887 5676653 1 27889999999888 5777764 5578999999886
Q ss_pred c
Q 020456 288 E 288 (326)
Q Consensus 288 ~ 288 (326)
+
T Consensus 226 n 226 (227)
T d1h6ua2 226 N 226 (227)
T ss_dssp E
T ss_pred C
Confidence 4
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=99.10 E-value=2.4e-09 Score=95.25 Aligned_cols=232 Identities=16% Similarity=0.214 Sum_probs=127.0
Q ss_pred CCCCeeEEEecccCCcccceecCCCchhhhhhhhccccCCCccEEEcccCCCcccccccCCCCCCCCCCccEEEEecCCC
Q 020456 10 STPKLHEVQVTEKNEDELRHWEGNLNSTIQKCYEEMIGFCDIEYLQLSDFPCLKEIWHGQALPVSFFNNLEELEVDDCTN 89 (326)
Q Consensus 10 ~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~L~~L~l~~c~~ 89 (326)
.+.+|++|.+.+.+... +.| ++.+++|++|+++++ .+..++. ...+++|++|++++|+
T Consensus 42 ~l~~l~~L~l~~~~I~~---l~g------------l~~L~nL~~L~Ls~N-~l~~l~~-----l~~L~~L~~L~L~~n~- 99 (384)
T d2omza2 42 DLDQVTTLQADRLGIKS---IDG------------VEYLNNLTQINFSNN-QLTDITP-----LKNLTKLVDILMNNNQ- 99 (384)
T ss_dssp HHTTCCEEECCSSCCCC---CTT------------GGGCTTCCEEECCSS-CCCCCGG-----GTTCTTCCEEECCSSC-
T ss_pred HhCCCCEEECCCCCCCC---ccc------------cccCCCCCEEeCcCC-cCCCCcc-----ccCCcccccccccccc-
Confidence 45678888888443332 222 334888999998876 4565442 2567889999998885
Q ss_pred CCcCCchhHHhhCCCCCEEEEccCcCcceecccc----------------------------------------cc---c
Q 020456 90 MSSAIPANLLRCLNNLRCLEVRNCDSIEEVLHLE----------------------------------------EL---N 126 (326)
Q Consensus 90 l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~----------------------------------------~~---~ 126 (326)
+.++.+ +..+++|+.|++.++... .+.... .. .
T Consensus 100 i~~i~~---l~~l~~L~~L~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (384)
T d2omza2 100 IADITP---LANLTNLTGLTLFNNQIT-DIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLT 175 (384)
T ss_dssp CCCCGG---GTTCTTCCEEECCSSCCC-CCGGGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCT
T ss_pred cccccc---cccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccccccchhhhhcccc
Confidence 555433 567888888887664321 100000 00 0
Q ss_pred c-----------ccCcCCCCCC----------------------CccEEecCCCccccccccccccccccccccEEeEec
Q 020456 127 A-----------DKEHISPLFP----------------------KLSELRLIDLPKLKRFCNFTENIIEMLMLWSLTIEN 173 (326)
Q Consensus 127 ~-----------~~~~~~~~~~----------------------~L~~L~l~~c~~L~~~~~~~~~~~~~~~L~~L~l~~ 173 (326)
. ........++ +|++|.+.++. ++.++ .+..+++|+.|.+++
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~l~~n~i~~~~~~~~~~~L~~L~l~~n~-l~~~~----~l~~l~~L~~L~l~~ 250 (384)
T d2omza2 176 TLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQ-LKDIG----TLASLTNLTDLDLAN 250 (384)
T ss_dssp TCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSC-CCCCG----GGGGCTTCSEEECCS
T ss_pred ccccccccccccccccccccccccceeeccCCccCCCCcccccCCCCEEECCCCC-CCCcc----hhhcccccchhcccc
Confidence 0 0000111233 44444444431 22222 344566777777766
Q ss_pred CCCCCccCcchhhhccCCCCCCceEEecccCcccceecccc------------ccccCccccceeeecccceeecccCCC
Q 020456 174 CPNMETFVSNSVVHVTTDNKKPQKLTLEENFLLADQVQPLF------------DEKVGEEVKGCIVFERMNYLTLDCLPS 241 (326)
Q Consensus 174 C~~l~~~~~~~~~~~~~~~~~L~~L~i~~~c~~l~~~~~~~------------~~~~~~~~~~~~~l~~L~~L~l~~c~~ 241 (326)
|. +..+.+. ..++ +|++|++ ..+. +..+.+.. ....+ ......+++++.|++.++ +
T Consensus 251 n~-l~~~~~~---~~~~---~L~~L~l-~~~~-l~~~~~~~~~~~l~~l~~~~n~l~~--~~~~~~~~~l~~L~ls~n-~ 318 (384)
T d2omza2 251 NQ-ISNLAPL---SGLT---KLTELKL-GANQ-ISNISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFN-N 318 (384)
T ss_dssp SC-CCCCGGG---TTCT---TCSEEEC-CSSC-CCCCGGGTTCTTCSEEECCSSCCSC--CGGGGGCTTCSEEECCSS-C
T ss_pred Cc-cCCCCcc---cccc---cCCEeec-cCcc-cCCCCcccccccccccccccccccc--ccccchhcccCeEECCCC-C
Confidence 53 4444221 1233 7888877 5543 22221110 00011 111334567777877775 4
Q ss_pred cceecCCCccccCCcccEEEeccCCccccccCCCCCCCCccEEEeccc
Q 020456 242 LTSFCLGNYALEFPSLEQVVVRQCPKMKIFSQGVLDTPMLNKVNVTEE 289 (326)
Q Consensus 242 l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~~L~~L~l~~c 289 (326)
++.++. ...+|+|++|++++| .++.++ .+..+++|++|++++|
T Consensus 319 l~~l~~---l~~l~~L~~L~L~~n-~l~~l~-~l~~l~~L~~L~l~~N 361 (384)
T d2omza2 319 ISDISP---VSSLTKLQRLFFANN-KVSDVS-SLANLTNINWLSAGHN 361 (384)
T ss_dssp CSCCGG---GGGCTTCCEEECCSS-CCCCCG-GGGGCTTCCEEECCSS
T ss_pred CCCCcc---cccCCCCCEEECCCC-CCCCCh-hHcCCCCCCEEECCCC
Confidence 555532 127889999999887 566665 3556889999999887
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.04 E-value=1.7e-09 Score=88.62 Aligned_cols=166 Identities=13% Similarity=0.189 Sum_probs=102.8
Q ss_pred CCCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccCcCcceeccccccccccCcCCCCCCCccEEecCCCccccccc
Q 020456 75 FFNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNCDSIEEVLHLEELNADKEHISPLFPKLSELRLIDLPKLKRFC 154 (326)
Q Consensus 75 ~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~ 154 (326)
.+.+|++|++.+|. ++++.. ++.+++|++|+++++. ++.+.+. ..+++|+.|++.++ +++.++
T Consensus 44 ~L~~L~~L~l~~~~-i~~l~~---l~~l~~L~~L~L~~n~-i~~l~~~-----------~~l~~L~~L~l~~n-~i~~l~ 106 (210)
T d1h6ta2 44 ELNSIDQIIANNSD-IKSVQG---IQYLPNVTKLFLNGNK-LTDIKPL-----------ANLKNLGWLFLDEN-KVKDLS 106 (210)
T ss_dssp HHHTCCEEECTTSC-CCCCTT---GGGCTTCCEEECCSSC-CCCCGGG-----------TTCTTCCEEECCSS-CCCCGG
T ss_pred HhcCccEEECcCCC-CCCchh---HhhCCCCCEEeCCCcc-ccCcccc-----------ccCccccccccccc-cccccc
Confidence 35677777777763 444432 5567888888887763 3333211 12457888888775 455554
Q ss_pred cccccccccccccEEeEecCCCCCccCcchhhhccCCCCCCceEEecccCcccceeccccccccCccccceeeeccccee
Q 020456 155 NFTENIIEMLMLWSLTIENCPNMETFVSNSVVHVTTDNKKPQKLTLEENFLLADQVQPLFDEKVGEEVKGCIVFERMNYL 234 (326)
Q Consensus 155 ~~~~~~~~~~~L~~L~l~~C~~l~~~~~~~~~~~~~~~~~L~~L~i~~~c~~l~~~~~~~~~~~~~~~~~~~~l~~L~~L 234 (326)
.+..+++|+.|++.+|. +..+. .+ ..++ .++.+++ .++. ++.... ...+++|+.+
T Consensus 107 ----~l~~l~~L~~L~l~~~~-~~~~~--~l-~~l~---~l~~l~~-~~n~-l~~~~~------------~~~l~~L~~l 161 (210)
T d1h6ta2 107 ----SLKDLKKLKSLSLEHNG-ISDIN--GL-VHLP---QLESLYL-GNNK-ITDITV------------LSRLTKLDTL 161 (210)
T ss_dssp ----GGTTCTTCCEEECTTSC-CCCCG--GG-GGCT---TCCEEEC-CSSC-CCCCGG------------GGGCTTCSEE
T ss_pred ----ccccccccccccccccc-ccccc--cc-cccc---ccccccc-cccc-cccccc------------cccccccccc
Confidence 34567888888888764 23331 22 2334 7888887 5554 322211 2245788888
Q ss_pred ecccCCCcceecCCCccccCCcccEEEeccCCccccccCCCCCCCCccEEEecc
Q 020456 235 TLDCLPSLTSFCLGNYALEFPSLEQVVVRQCPKMKIFSQGVLDTPMLNKVNVTE 288 (326)
Q Consensus 235 ~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~~L~~L~l~~ 288 (326)
++.++ .++.++. . ..+++|++|+++++ .++.++ .+..+++|++|++++
T Consensus 162 ~l~~n-~l~~i~~--l-~~l~~L~~L~Ls~N-~i~~l~-~l~~l~~L~~L~Ls~ 209 (210)
T d1h6ta2 162 SLEDN-QISDIVP--L-AGLTKLQNLYLSKN-HISDLR-ALAGLKNLDVLELFS 209 (210)
T ss_dssp ECCSS-CCCCCGG--G-TTCTTCCEEECCSS-CCCBCG-GGTTCTTCSEEEEEE
T ss_pred ccccc-ccccccc--c-cCCCCCCEEECCCC-CCCCCh-hhcCCCCCCEEEccC
Confidence 88876 4555542 1 16788999999776 577776 455788999998864
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.04 E-value=2.2e-08 Score=86.39 Aligned_cols=229 Identities=15% Similarity=0.083 Sum_probs=127.2
Q ss_pred CCeeEEEecccCCcccceecCCCchhhhhhhhccccCCCccEEEcccCCCcccccccCCCCCCCCCCccEEEEecCCCCC
Q 020456 12 PKLHEVQVTEKNEDELRHWEGNLNSTIQKCYEEMIGFCDIEYLQLSDFPCLKEIWHGQALPVSFFNNLEELEVDDCTNMS 91 (326)
Q Consensus 12 ~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~L~~L~l~~c~~l~ 91 (326)
+++++|++.+.. +.++... ....+++|++|++.++.... +.+.. ...+++|++|++.++ +++
T Consensus 31 ~~l~~L~Ls~N~---i~~l~~~----------~f~~l~~L~~L~l~~n~~~~-i~~~~---f~~l~~L~~L~l~~n-~l~ 92 (305)
T d1xkua_ 31 PDTALLDLQNNK---ITEIKDG----------DFKNLKNLHTLILINNKISK-ISPGA---FAPLVKLERLYLSKN-QLK 92 (305)
T ss_dssp TTCCEEECCSSC---CCCBCTT----------TTTTCTTCCEEECCSSCCCC-BCTTT---TTTCTTCCEEECCSS-CCS
T ss_pred CCCCEEECcCCc---CCCcChh----------Hhhccccccccccccccccc-cchhh---hhCCCccCEecccCC-ccC
Confidence 689999999332 3333211 13348899999999877644 22221 256889999999998 466
Q ss_pred cCCchhHHhhCCCCCEEEEccCcCcceecccc--ccc--------c-------ccCcCCCCCCCccEEecCCCccccccc
Q 020456 92 SAIPANLLRCLNNLRCLEVRNCDSIEEVLHLE--ELN--------A-------DKEHISPLFPKLSELRLIDLPKLKRFC 154 (326)
Q Consensus 92 ~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~--~~~--------~-------~~~~~~~~~~~L~~L~l~~c~~L~~~~ 154 (326)
.++.. ..+.|+.|.+.++. +..+.... ... . ........+++|+.+.+.++. +..++
T Consensus 93 ~l~~~----~~~~l~~L~~~~n~-l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~-l~~l~ 166 (305)
T d1xkua_ 93 ELPEK----MPKTLQELRVHENE-ITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN-ITTIP 166 (305)
T ss_dssp BCCSS----CCTTCCEEECCSSC-CCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC-CCSCC
T ss_pred cCccc----hhhhhhhhhccccc-hhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCC-ccccC
Confidence 66543 35778888877643 32221100 000 0 000011123456666666543 33333
Q ss_pred cccccccccccccEEeEecCCCCCccCcchhhhccCCCCCCceEEecccCcccceeccccccccCccccceeeeccccee
Q 020456 155 NFTENIIEMLMLWSLTIENCPNMETFVSNSVVHVTTDNKKPQKLTLEENFLLADQVQPLFDEKVGEEVKGCIVFERMNYL 234 (326)
Q Consensus 155 ~~~~~~~~~~~L~~L~l~~C~~l~~~~~~~~~~~~~~~~~L~~L~i~~~c~~l~~~~~~~~~~~~~~~~~~~~l~~L~~L 234 (326)
. ..+++|++|++.++... ...+.. ...+. .++.|.+ .++. +..+.+.. ...+++|++|
T Consensus 167 ~-----~~~~~L~~L~l~~n~~~-~~~~~~-~~~~~---~l~~L~~-s~n~-l~~~~~~~----------~~~l~~L~~L 224 (305)
T d1xkua_ 167 Q-----GLPPSLTELHLDGNKIT-KVDAAS-LKGLN---NLAKLGL-SFNS-ISAVDNGS----------LANTPHLREL 224 (305)
T ss_dssp S-----SCCTTCSEEECTTSCCC-EECTGG-GTTCT---TCCEEEC-CSSC-CCEECTTT----------GGGSTTCCEE
T ss_pred c-----ccCCccCEEECCCCcCC-CCChhH-hhccc---ccccccc-cccc-cccccccc----------ccccccceee
Confidence 2 22566777777665322 221222 22333 6677776 5553 33332221 2345778888
Q ss_pred ecccCCCcceecCCCccccCCcccEEEeccCCccccccC-------CCCCCCCccEEEecccc
Q 020456 235 TLDCLPSLTSFCLGNYALEFPSLEQVVVRQCPKMKIFSQ-------GVLDTPMLNKVNVTEEE 290 (326)
Q Consensus 235 ~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~-------~~~~~~~L~~L~l~~c~ 290 (326)
++.++ .++.++.... .+++|++|+++++ ++++++. .....++|+.+.+++++
T Consensus 225 ~L~~N-~L~~lp~~l~--~l~~L~~L~Ls~N-~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~ 283 (305)
T d1xkua_ 225 HLNNN-KLVKVPGGLA--DHKYIQVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGVSLFSNP 283 (305)
T ss_dssp ECCSS-CCSSCCTTTT--TCSSCCEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEECCSSS
T ss_pred ecccc-cccccccccc--cccCCCEEECCCC-ccCccChhhccCcchhcccCCCCEEECCCCc
Confidence 88876 5666765333 6778888888775 4665543 12245678888887765
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.03 E-value=3.1e-09 Score=91.07 Aligned_cols=204 Identities=10% Similarity=0.026 Sum_probs=131.2
Q ss_pred CCCccEEEcccCCCcccccccCCCCCCCCCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccCcCcceecccccccc
Q 020456 48 FCDIEYLQLSDFPCLKEIWHGQALPVSFFNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNCDSIEEVLHLEELNA 127 (326)
Q Consensus 48 ~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~ 127 (326)
.+++++|+|++. .++.++... ...+++|++|+++++ ++..+.+. ....+..++++.+.....+..+...
T Consensus 31 p~~~~~L~Ls~N-~i~~i~~~~---f~~l~~L~~L~ls~n-~l~~i~~~-~~~~~~~~~~l~~~~~~~~~~l~~~----- 99 (284)
T d1ozna_ 31 PAASQRIFLHGN-RISHVPAAS---FRACRNLTILWLHSN-VLARIDAA-AFTGLALLEQLDLSDNAQLRSVDPA----- 99 (284)
T ss_dssp CTTCSEEECTTS-CCCEECTTT---TTTCTTCCEEECCSS-CCCEECTT-TTTTCTTCCEEECCSCTTCCCCCTT-----
T ss_pred CCCCCEEECcCC-cCCCCCHHH---hhccccccccccccc-cccccccc-cccccccccccccccccccccccch-----
Confidence 457888888864 456655433 245688888888876 35555443 2556778888877666655544211
Q ss_pred ccCcCCCCCCCccEEecCCCccccccccccccccccccccEEeEecCCCCCccCcchhhhccCCCCCCceEEecccCccc
Q 020456 128 DKEHISPLFPKLSELRLIDLPKLKRFCNFTENIIEMLMLWSLTIENCPNMETFVSNSVVHVTTDNKKPQKLTLEENFLLA 207 (326)
Q Consensus 128 ~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~L~~L~l~~C~~l~~~~~~~~~~~~~~~~~L~~L~i~~~c~~l 207 (326)
....+++|+.|+++++.. ..++.. .+..+++|+.+++.+. .++.+++ .....+. +|++|++ .++. +
T Consensus 100 ----~~~~l~~L~~L~l~~n~~-~~~~~~--~~~~~~~L~~l~l~~N-~l~~i~~-~~f~~~~---~L~~L~l-~~N~-l 165 (284)
T d1ozna_ 100 ----TFHGLGRLHTLHLDRCGL-QELGPG--LFRGLAALQYLYLQDN-ALQALPD-DTFRDLG---NLTHLFL-HGNR-I 165 (284)
T ss_dssp ----TTTTCTTCCEEECTTSCC-CCCCTT--TTTTCTTCCEEECCSS-CCCCCCT-TTTTTCT---TCCEEEC-CSSC-C
T ss_pred ----hhcccccCCEEecCCccc-cccccc--ccchhcccchhhhccc-cccccCh-hHhcccc---chhhccc-ccCc-c
Confidence 112346899999988753 333321 3456788999999874 6776643 3333455 8999999 8774 5
Q ss_pred ceeccccccccCccccceeeecccceeecccCCCcceecCCCccccCCcccEEEeccCCcccccc-CCCCCCCCccEEEe
Q 020456 208 DQVQPLFDEKVGEEVKGCIVFERMNYLTLDCLPSLTSFCLGNYALEFPSLEQVVVRQCPKMKIFS-QGVLDTPMLNKVNV 286 (326)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~-~~~~~~~~L~~L~l 286 (326)
+.+.+.. ...+++|+++.+.++. ++.+...... .+++|++|+++++.- ..++ ..+..+++|++|++
T Consensus 166 ~~l~~~~----------f~~l~~L~~l~l~~N~-l~~i~~~~f~-~l~~L~~L~l~~N~i-~~~~~~~~~~~~~L~~L~l 232 (284)
T d1ozna_ 166 SSVPERA----------FRGLHSLDRLLLHQNR-VAHVHPHAFR-DLGRLMTLYLFANNL-SALPTEALAPLRALQYLRL 232 (284)
T ss_dssp CEECTTT----------TTTCTTCCEEECCSSC-CCEECTTTTT-TCTTCCEEECCSSCC-SCCCHHHHTTCTTCCEEEC
T ss_pred cccchhh----------hccccccchhhhhhcc-ccccChhHhh-hhhhccccccccccc-ccccccccccccccCEEEe
Confidence 5554331 2345789999998865 4444433322 788999999977654 4444 35567899999999
Q ss_pred ccc
Q 020456 287 TEE 289 (326)
Q Consensus 287 ~~c 289 (326)
++.
T Consensus 233 ~~N 235 (284)
T d1ozna_ 233 NDN 235 (284)
T ss_dssp CSS
T ss_pred cCC
Confidence 875
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=99.01 E-value=3e-10 Score=98.89 Aligned_cols=216 Identities=9% Similarity=0.007 Sum_probs=125.1
Q ss_pred CCCccEEEEecCCCCCcC--CchhHHhhCCCCCEEEEccCcCcc-eeccccccccccCcCCCCCCCccEEecCCCccccc
Q 020456 76 FNNLEELEVDDCTNMSSA--IPANLLRCLNNLRCLEVRNCDSIE-EVLHLEELNADKEHISPLFPKLSELRLIDLPKLKR 152 (326)
Q Consensus 76 ~~~L~~L~l~~c~~l~~~--~~~~~~~~l~~L~~L~l~~c~~l~-~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~ 152 (326)
..++++|++.++. +... .|.. ++++++|++|++++|..+. .++...+ .+++|++|+++++. +..
T Consensus 49 ~~~v~~L~L~~~~-l~g~~~lp~~-l~~L~~L~~L~Ls~~N~l~g~iP~~i~----------~L~~L~~L~Ls~N~-l~~ 115 (313)
T d1ogqa_ 49 TYRVNNLDLSGLN-LPKPYPIPSS-LANLPYLNFLYIGGINNLVGPIPPAIA----------KLTQLHYLYITHTN-VSG 115 (313)
T ss_dssp CCCEEEEEEECCC-CSSCEECCGG-GGGCTTCSEEEEEEETTEESCCCGGGG----------GCTTCSEEEEEEEC-CEE
T ss_pred cEEEEEEECCCCC-CCCCCCCChH-HhcCccccccccccccccccccccccc----------cccccchhhhcccc-ccc
Confidence 3479999999984 4431 2333 8899999999999876664 3432211 34699999999865 333
Q ss_pred cccccccccccccccEEeEecCCCCCccCcchhhhccCCCCCCceEEecccCcccceecccc--------------cccc
Q 020456 153 FCNFTENIIEMLMLWSLTIENCPNMETFVSNSVVHVTTDNKKPQKLTLEENFLLADQVQPLF--------------DEKV 218 (326)
Q Consensus 153 ~~~~~~~~~~~~~L~~L~l~~C~~l~~~~~~~~~~~~~~~~~L~~L~i~~~c~~l~~~~~~~--------------~~~~ 218 (326)
+... .+..+++|+.+++..+.....+ +..+. .++ .|+.+++ .++.....+...- +...
T Consensus 116 ~~~~--~~~~~~~L~~l~l~~N~~~~~~-p~~l~-~l~---~L~~l~l-~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~ 187 (313)
T d1ogqa_ 116 AIPD--FLSQIKTLVTLDFSYNALSGTL-PPSIS-SLP---NLVGITF-DGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187 (313)
T ss_dssp ECCG--GGGGCTTCCEEECCSSEEESCC-CGGGG-GCT---TCCEEEC-CSSCCEEECCGGGGCCCTTCCEEECCSSEEE
T ss_pred cccc--cccchhhhcccccccccccccC-chhhc-cCc---ccceeec-ccccccccccccccccccccccccccccccc
Confidence 3221 4567889999999886544333 44443 455 8999998 7765433322110 0000
Q ss_pred CccccceeeecccceeecccCCCcceecCCCccccCCcccEEEeccCCccccccCCCCCCCCccEEEeccccCCCCcccc
Q 020456 219 GEEVKGCIVFERMNYLTLDCLPSLTSFCLGNYALEFPSLEQVVVRQCPKMKIFSQGVLDTPMLNKVNVTEEEKDDDDEGC 298 (326)
Q Consensus 219 ~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~~L~~L~l~~c~~~~~~~~~ 298 (326)
+........ .....+++..+.....++.... .+++|+.+.+.++..-. .+..+..+++|++|+++++.-. +.++
T Consensus 188 ~~~~~~~~~-l~~~~l~l~~~~~~~~~~~~~~--~~~~l~~l~~~~~~l~~-~~~~~~~~~~L~~L~Ls~N~l~--g~iP 261 (313)
T d1ogqa_ 188 GKIPPTFAN-LNLAFVDLSRNMLEGDASVLFG--SDKNTQKIHLAKNSLAF-DLGKVGLSKNLNGLDLRNNRIY--GTLP 261 (313)
T ss_dssp EECCGGGGG-CCCSEEECCSSEEEECCGGGCC--TTSCCSEEECCSSEECC-BGGGCCCCTTCCEEECCSSCCE--ECCC
T ss_pred ccccccccc-cccccccccccccccccccccc--ccccccccccccccccc-cccccccccccccccCccCeec--ccCC
Confidence 000000000 1122333333322222332222 56889999987775433 3344557899999999988321 2344
Q ss_pred ccCchHHHHHHHHHhhhhhh
Q 020456 299 WEGNLNDTIKQLFNEIVSIN 318 (326)
Q Consensus 299 ~~~~~~~~l~~l~i~~~~~~ 318 (326)
..+..+++|+.+.+++..+.
T Consensus 262 ~~l~~L~~L~~L~Ls~N~l~ 281 (313)
T d1ogqa_ 262 QGLTQLKFLHSLNVSFNNLC 281 (313)
T ss_dssp GGGGGCTTCCEEECCSSEEE
T ss_pred hHHhCCCCCCEEECcCCccc
Confidence 44555677887777765554
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.98 E-value=4.5e-09 Score=87.67 Aligned_cols=203 Identities=14% Similarity=0.132 Sum_probs=97.3
Q ss_pred CCCccEEEcccCCCcccccccCCCCCCCCCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccCcCcceecccccccc
Q 020456 48 FCDIEYLQLSDFPCLKEIWHGQALPVSFFNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNCDSIEEVLHLEELNA 127 (326)
Q Consensus 48 ~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~ 127 (326)
++++++|++++. .+..++... + ..+++|++|+++++.....+.+ ..+..+++++++.+..+..+..+...
T Consensus 28 ~~~l~~L~Ls~n-~i~~l~~~~-f--~~l~~L~~L~ls~n~~~~~i~~-~~f~~l~~l~~l~~~~~n~l~~~~~~----- 97 (242)
T d1xwdc1 28 PRNAIELRFVLT-KLRVIQKGA-F--SGFGDLEKIEISQNDVLEVIEA-DVFSNLPKLHEIRIEKANNLLYINPE----- 97 (242)
T ss_dssp CSCCSEEEEESC-CCCEECTTT-T--TTCTTCCEEEEESCTTCCEECS-SSEESCTTCCEEEEECCTTCCEECTT-----
T ss_pred CCCCCEEECcCC-cCCccChhH-h--hccchhhhhhhccccccceeec-cccccccccccccccccccccccccc-----
Confidence 346777777653 344444322 1 3466777777777654332222 22445677777776665555443211
Q ss_pred ccCcCCCCCCCccEEecCCCccccccccccccccccccccEEeEe--cCCCCCccCcchhhhccCCCCCCceEEecccCc
Q 020456 128 DKEHISPLFPKLSELRLIDLPKLKRFCNFTENIIEMLMLWSLTIE--NCPNMETFVSNSVVHVTTDNKKPQKLTLEENFL 205 (326)
Q Consensus 128 ~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~L~~L~l~--~C~~l~~~~~~~~~~~~~~~~~L~~L~i~~~c~ 205 (326)
....+++|+.+.+.++ +++.++. ...+.+++.+... +...+..+....+..... .++.|.+ . ..
T Consensus 98 ----~~~~l~~L~~l~l~~~-~l~~~~~----~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~---~l~~L~l-~-~n 163 (242)
T d1xwdc1 98 ----AFQNLPNLQYLLISNT-GIKHLPD----VHKIHSLQKVLLDIQDNINIHTIERNSFVGLSF---ESVILWL-N-KN 163 (242)
T ss_dssp ----SEECCTTCCEEEEESC-CCCSCCC----CTTTCBSSCEEEEEESCTTCCEECTTSSTTSBS---SCEEEEC-C-SS
T ss_pred ----cccccccccccccchh-hhccccc----ccccccccccccccccccccccccccccccccc---cceeeec-c-cc
Confidence 0112356777777664 2433332 1222333333322 223344443222222222 4555555 3 23
Q ss_pred ccceeccccccccCccccceeeecccceeecccCCCcceecCCCccccCCcccEEEeccCCccccccC-CCCCCCCccEE
Q 020456 206 LADQVQPLFDEKVGEEVKGCIVFERMNYLTLDCLPSLTSFCLGNYALEFPSLEQVVVRQCPKMKIFSQ-GVLDTPMLNKV 284 (326)
Q Consensus 206 ~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~-~~~~~~~L~~L 284 (326)
.++.+... ....+++..+.......++.++..... .+++|++|++++.. ++.+|. ++..++.|+.+
T Consensus 164 ~l~~i~~~-----------~~~~~~l~~~~~l~~n~l~~l~~~~f~-~l~~L~~L~Ls~N~-l~~l~~~~~~~l~~L~~l 230 (242)
T d1xwdc1 164 GIQEIHNC-----------AFNGTQLDELNLSDNNNLEELPNDVFH-GASGPVILDISRTR-IHSLPSYGLENLKKLRAR 230 (242)
T ss_dssp CCCEECTT-----------TTTTCCEEEEECTTCTTCCCCCTTTTT-TSCCCSEEECTTSC-CCCCCSSSCTTCCEEESS
T ss_pred cccccccc-----------cccchhhhccccccccccccccHHHhc-CCCCCCEEECCCCc-CCccCHHHHcCCcccccC
Confidence 34443322 111244455555555667777654432 56777777776653 666665 33344455544
Q ss_pred Eec
Q 020456 285 NVT 287 (326)
Q Consensus 285 ~l~ 287 (326)
.+.
T Consensus 231 ~~~ 233 (242)
T d1xwdc1 231 STY 233 (242)
T ss_dssp SEE
T ss_pred cCC
Confidence 443
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=98.98 E-value=5.1e-09 Score=86.63 Aligned_cols=189 Identities=13% Similarity=0.143 Sum_probs=125.8
Q ss_pred cCCCCeeEEEecccCCcccceecCCCchhhhhhhhccccCCCccEEEcccCCCcccccccCCCCCCCCCCccEEEEecCC
Q 020456 9 VSTPKLHEVQVTEKNEDELRHWEGNLNSTIQKCYEEMIGFCDIEYLQLSDFPCLKEIWHGQALPVSFFNNLEELEVDDCT 88 (326)
Q Consensus 9 ~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~L~~L~l~~c~ 88 (326)
..+.+|+.|.+.+++. ..+.+ +..+++|++|+++++. +..+.. ...+++|+++.+.+|.
T Consensus 38 ~~l~~L~~L~l~~~~i---~~l~~------------l~~l~~L~~L~ls~n~-i~~~~~-----l~~l~~l~~l~~~~n~ 96 (227)
T d1h6ua2 38 ADLDGITTLSAFGTGV---TTIEG------------VQYLNNLIGLELKDNQ-ITDLAP-----LKNLTKITELELSGNP 96 (227)
T ss_dssp HHHHTCCEEECTTSCC---CCCTT------------GGGCTTCCEEECCSSC-CCCCGG-----GTTCCSCCEEECCSCC
T ss_pred HHcCCcCEEECCCCCC---Ccchh------------HhcCCCCcEeecCCce-eecccc-----cccccccccccccccc
Confidence 3567888888884432 22222 3459999999999865 333221 2578999999999985
Q ss_pred CCCcCCchhHHhhCCCCCEEEEccCcCcceeccccccccccCcCCCCCCCccEEecCCCccccccccccccccccccccE
Q 020456 89 NMSSAIPANLLRCLNNLRCLEVRNCDSIEEVLHLEELNADKEHISPLFPKLSELRLIDLPKLKRFCNFTENIIEMLMLWS 168 (326)
Q Consensus 89 ~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~L~~ 168 (326)
++++. . +.++++|+.+.++++.... +.. ....+.++.+.+.++.- .... .+..+++|++
T Consensus 97 -~~~i~-~--l~~l~~L~~l~l~~~~~~~-~~~-----------~~~~~~~~~l~~~~~~~-~~~~----~~~~~~~L~~ 155 (227)
T d1h6ua2 97 -LKNVS-A--IAGLQSIKTLDLTSTQITD-VTP-----------LAGLSNLQVLYLDLNQI-TNIS----PLAGLTNLQY 155 (227)
T ss_dssp -CSCCG-G--GTTCTTCCEEECTTSCCCC-CGG-----------GTTCTTCCEEECCSSCC-CCCG----GGGGCTTCCE
T ss_pred -ccccc-c--ccccccccccccccccccc-cch-----------hccccchhhhhchhhhh-chhh----hhcccccccc
Confidence 44543 2 6689999999998875332 111 11235778888876542 2222 3456789999
Q ss_pred EeEecCCCCCccCcchhhhccCCCCCCceEEecccCcccceeccccccccCccccceeeecccceeecccCCCcceecCC
Q 020456 169 LTIENCPNMETFVSNSVVHVTTDNKKPQKLTLEENFLLADQVQPLFDEKVGEEVKGCIVFERMNYLTLDCLPSLTSFCLG 248 (326)
Q Consensus 169 L~l~~C~~l~~~~~~~~~~~~~~~~~L~~L~i~~~c~~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~ 248 (326)
|.+.+|. +....+ ...++ +|++|++ .++ .++.+.+ ...+++|++|++.++ +++.++..
T Consensus 156 L~l~~n~-~~~~~~---l~~l~---~L~~L~L-s~n-~l~~l~~------------l~~l~~L~~L~Ls~N-~lt~i~~l 213 (227)
T d1h6ua2 156 LSIGNAQ-VSDLTP---LANLS---KLTTLKA-DDN-KISDISP------------LASLPNLIEVHLKNN-QISDVSPL 213 (227)
T ss_dssp EECCSSC-CCCCGG---GTTCT---TCCEEEC-CSS-CCCCCGG------------GGGCTTCCEEECTTS-CCCBCGGG
T ss_pred ccccccc-cccchh---hcccc---cceeccc-CCC-ccCCChh------------hcCCCCCCEEECcCC-cCCCCccc
Confidence 9998763 443322 22445 9999999 887 4655432 235689999999998 58877642
Q ss_pred CccccCCcccEEEecc
Q 020456 249 NYALEFPSLEQVVVRQ 264 (326)
Q Consensus 249 ~~~~~~~~L~~L~i~~ 264 (326)
..+++|+.|.+++
T Consensus 214 ---~~l~~L~~L~lsn 226 (227)
T d1h6ua2 214 ---ANTSNLFIVTLTN 226 (227)
T ss_dssp ---TTCTTCCEEEEEE
T ss_pred ---ccCCCCCEEEeeC
Confidence 2788999998864
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=98.95 E-value=3.9e-09 Score=85.65 Aligned_cols=35 Identities=23% Similarity=0.473 Sum_probs=15.8
Q ss_pred CCCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccC
Q 020456 75 FFNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNC 113 (326)
Q Consensus 75 ~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c 113 (326)
.+++|++|++++| +++++.+ ++++++|++|++.++
T Consensus 60 ~l~nL~~L~Ls~N-~l~~~~~---l~~l~~L~~L~l~~n 94 (199)
T d2omxa2 60 YLNNLTQINFSNN-QLTDITP---LKNLTKLVDILMNNN 94 (199)
T ss_dssp GCTTCCEEECCSS-CCCCCGG---GTTCTTCCEEECCSS
T ss_pred cCCCcCcCccccc-cccCccc---ccCCccccccccccc
Confidence 3455555555554 2333322 334555555555443
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=98.95 E-value=9.2e-09 Score=91.30 Aligned_cols=189 Identities=15% Similarity=0.251 Sum_probs=113.5
Q ss_pred cCCCccEEEcccCCCcccccccCCCCCCCCCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccCcCcceeccccccc
Q 020456 47 GFCDIEYLQLSDFPCLKEIWHGQALPVSFFNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNCDSIEEVLHLEELN 126 (326)
Q Consensus 47 ~~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~ 126 (326)
.+++++.+.+.++. +..+. +....++|++|++.+|. ++.+. . +..+++|+.|++.++. +..+.+.
T Consensus 195 ~l~~~~~l~l~~n~-i~~~~-----~~~~~~~L~~L~l~~n~-l~~~~-~--l~~l~~L~~L~l~~n~-l~~~~~~---- 259 (384)
T d2omza2 195 KLTNLESLIATNNQ-ISDIT-----PLGILTNLDELSLNGNQ-LKDIG-T--LASLTNLTDLDLANNQ-ISNLAPL---- 259 (384)
T ss_dssp GCTTCSEEECCSSC-CCCCG-----GGGGCTTCCEEECCSSC-CCCCG-G--GGGCTTCSEEECCSSC-CCCCGGG----
T ss_pred cccccceeeccCCc-cCCCC-----cccccCCCCEEECCCCC-CCCcc-h--hhcccccchhccccCc-cCCCCcc----
Confidence 35566666666432 22211 11344677777777763 44432 2 4567777777777653 3332211
Q ss_pred cccCcCCCCCCCccEEecCCCccccccccccccccccccccEEeEecCCCCCccCcchhhhccCCCCCCceEEecccCcc
Q 020456 127 ADKEHISPLFPKLSELRLIDLPKLKRFCNFTENIIEMLMLWSLTIENCPNMETFVSNSVVHVTTDNKKPQKLTLEENFLL 206 (326)
Q Consensus 127 ~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~L~~L~l~~C~~l~~~~~~~~~~~~~~~~~L~~L~i~~~c~~ 206 (326)
...++|+.|+++++. +..++ .+..++.++.+.+..+ .+..+. ....+. ++++|++ .++.
T Consensus 260 -------~~~~~L~~L~l~~~~-l~~~~----~~~~~~~l~~l~~~~n-~l~~~~---~~~~~~---~l~~L~l-s~n~- 318 (384)
T d2omza2 260 -------SGLTKLTELKLGANQ-ISNIS----PLAGLTALTNLELNEN-QLEDIS---PISNLK---NLTYLTL-YFNN- 318 (384)
T ss_dssp -------TTCTTCSEEECCSSC-CCCCG----GGTTCTTCSEEECCSS-CCSCCG---GGGGCT---TCSEEEC-CSSC-
T ss_pred -------cccccCCEeeccCcc-cCCCC----cccccccccccccccc-cccccc---ccchhc---ccCeEEC-CCCC-
Confidence 123577777776643 33332 2345667777777665 333331 122344 8888888 7663
Q ss_pred cceeccccccccCccccceeeecccceeecccCCCcceecCCCccccCCcccEEEeccCCccccccCCCCCCCCccEEEe
Q 020456 207 ADQVQPLFDEKVGEEVKGCIVFERMNYLTLDCLPSLTSFCLGNYALEFPSLEQVVVRQCPKMKIFSQGVLDTPMLNKVNV 286 (326)
Q Consensus 207 l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~~L~~L~l 286 (326)
++.+.+ ...+++|++|++.+| .++.++. . ..+++|++|+++++ .++.++. +..+++|+.|++
T Consensus 319 l~~l~~------------l~~l~~L~~L~L~~n-~l~~l~~--l-~~l~~L~~L~l~~N-~l~~l~~-l~~l~~L~~L~L 380 (384)
T d2omza2 319 ISDISP------------VSSLTKLQRLFFANN-KVSDVSS--L-ANLTNINWLSAGHN-QISDLTP-LANLTRITQLGL 380 (384)
T ss_dssp CSCCGG------------GGGCTTCCEEECCSS-CCCCCGG--G-GGCTTCCEEECCSS-CCCBCGG-GTTCTTCSEEEC
T ss_pred CCCCcc------------cccCCCCCEEECCCC-CCCCChh--H-cCCCCCCEEECCCC-cCCCChh-hccCCCCCEeeC
Confidence 444322 235799999999998 5776653 2 27899999999766 5776664 557899999999
Q ss_pred ccc
Q 020456 287 TEE 289 (326)
Q Consensus 287 ~~c 289 (326)
++.
T Consensus 381 ~~N 383 (384)
T d2omza2 381 NDQ 383 (384)
T ss_dssp CCE
T ss_pred CCC
Confidence 764
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.93 E-value=1.5e-08 Score=86.63 Aligned_cols=183 Identities=14% Similarity=0.106 Sum_probs=128.8
Q ss_pred CCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccCcCcceeccccccccccCcCCCCCCCccEEecCCCcccccccc
Q 020456 76 FNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNCDSIEEVLHLEELNADKEHISPLFPKLSELRLIDLPKLKRFCN 155 (326)
Q Consensus 76 ~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~ 155 (326)
.+++++|+|+++ +++.+++. .+..+++|++|+++++. +..+... .....+.++.+.+.....++.++.
T Consensus 31 p~~~~~L~Ls~N-~i~~i~~~-~f~~l~~L~~L~ls~n~-l~~i~~~---------~~~~~~~~~~l~~~~~~~~~~l~~ 98 (284)
T d1ozna_ 31 PAASQRIFLHGN-RISHVPAA-SFRACRNLTILWLHSNV-LARIDAA---------AFTGLALLEQLDLSDNAQLRSVDP 98 (284)
T ss_dssp CTTCSEEECTTS-CCCEECTT-TTTTCTTCCEEECCSSC-CCEECTT---------TTTTCTTCCEEECCSCTTCCCCCT
T ss_pred CCCCCEEECcCC-cCCCCCHH-Hhhcccccccccccccc-ccccccc---------cccccccccccccccccccccccc
Confidence 368999999998 57777654 37889999999998764 4444221 112345788888877777877754
Q ss_pred ccccccccccccEEeEecCCCCCccCcchhhhccCCCCCCceEEecccCcccceeccccccccCccccceeeecccceee
Q 020456 156 FTENIIEMLMLWSLTIENCPNMETFVSNSVVHVTTDNKKPQKLTLEENFLLADQVQPLFDEKVGEEVKGCIVFERMNYLT 235 (326)
Q Consensus 156 ~~~~~~~~~~L~~L~l~~C~~l~~~~~~~~~~~~~~~~~L~~L~i~~~c~~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~ 235 (326)
. .+..+++|+.|++.++. +..+.. ....... +|+.+++ .+. .++.+.... ...+++|+.|+
T Consensus 99 ~--~~~~l~~L~~L~l~~n~-~~~~~~-~~~~~~~---~L~~l~l-~~N-~l~~i~~~~----------f~~~~~L~~L~ 159 (284)
T d1ozna_ 99 A--TFHGLGRLHTLHLDRCG-LQELGP-GLFRGLA---ALQYLYL-QDN-ALQALPDDT----------FRDLGNLTHLF 159 (284)
T ss_dssp T--TTTTCTTCCEEECTTSC-CCCCCT-TTTTTCT---TCCEEEC-CSS-CCCCCCTTT----------TTTCTTCCEEE
T ss_pred h--hhcccccCCEEecCCcc-cccccc-cccchhc---ccchhhh-ccc-cccccChhH----------hccccchhhcc
Confidence 2 56778999999998874 344322 2333444 8999998 554 455543221 22457899999
Q ss_pred cccCCCcceecCCCccccCCcccEEEeccCCccccccCCCCCCCCccEEEeccccC
Q 020456 236 LDCLPSLTSFCLGNYALEFPSLEQVVVRQCPKMKIFSQGVLDTPMLNKVNVTEEEK 291 (326)
Q Consensus 236 l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~~L~~L~l~~c~~ 291 (326)
+.++ .++.++..... .+++|+++.+.++.-....|..+..+++|++|+++++.-
T Consensus 160 l~~N-~l~~l~~~~f~-~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i 213 (284)
T d1ozna_ 160 LHGN-RISSVPERAFR-GLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNL 213 (284)
T ss_dssp CCSS-CCCEECTTTTT-TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred cccC-cccccchhhhc-cccccchhhhhhccccccChhHhhhhhhccccccccccc
Confidence 9986 67877765543 789999999987765554567778899999999998743
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=98.92 E-value=7.5e-09 Score=83.90 Aligned_cols=162 Identities=15% Similarity=0.174 Sum_probs=107.5
Q ss_pred CCCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccCcCcceeccccccccccCcCCCCCCCccEEecCCCccccccc
Q 020456 75 FFNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNCDSIEEVLHLEELNADKEHISPLFPKLSELRLIDLPKLKRFC 154 (326)
Q Consensus 75 ~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~ 154 (326)
.++++++|++.+|. ++++.. ++.+++|++|+++++. +..+.+. ..+++|+.|.++++. +..++
T Consensus 38 ~l~~l~~L~l~~~~-i~~l~~---l~~l~nL~~L~Ls~N~-l~~~~~l-----------~~l~~L~~L~l~~n~-~~~~~ 100 (199)
T d2omxa2 38 DLDQVTTLQADRLG-IKSIDG---VEYLNNLTQINFSNNQ-LTDITPL-----------KNLTKLVDILMNNNQ-IADIT 100 (199)
T ss_dssp HHTTCCEEECTTSC-CCCCTT---GGGCTTCCEEECCSSC-CCCCGGG-----------TTCTTCCEEECCSSC-CCCCG
T ss_pred HhcCCCEEECCCCC-CCCccc---cccCCCcCcCcccccc-ccCcccc-----------cCCcccccccccccc-ccccc
Confidence 46788999998884 555432 6679999999999874 5444221 135689999998764 34443
Q ss_pred cccccccccccccEEeEecCCCCCccCcchhhhccCCCCCCceEEecccCcccceeccccccccCccccceeeeccccee
Q 020456 155 NFTENIIEMLMLWSLTIENCPNMETFVSNSVVHVTTDNKKPQKLTLEENFLLADQVQPLFDEKVGEEVKGCIVFERMNYL 234 (326)
Q Consensus 155 ~~~~~~~~~~~L~~L~l~~C~~l~~~~~~~~~~~~~~~~~L~~L~i~~~c~~l~~~~~~~~~~~~~~~~~~~~l~~L~~L 234 (326)
.+..+++|+.|.+++|...... . ...++ +|+.|++ .++. +..+.. ...+++|++|
T Consensus 101 ----~l~~l~~L~~L~l~~~~~~~~~---~-~~~l~---~L~~L~l-~~n~-l~~~~~------------l~~~~~L~~L 155 (199)
T d2omxa2 101 ----PLANLTNLTGLTLFNNQITDID---P-LKNLT---NLNRLEL-SSNT-ISDISA------------LSGLTSLQQL 155 (199)
T ss_dssp ----GGTTCTTCSEEECCSSCCCCCG---G-GTTCT---TCSEEEC-CSSC-CCCCGG------------GTTCTTCSEE
T ss_pred ----cccccccccccccccccccccc---c-cchhh---hhHHhhh-hhhh-hccccc------------cccccccccc
Confidence 3567889999999887543321 1 22344 8999998 7764 333321 2245788999
Q ss_pred ecccCCCcceecCCCccccCCcccEEEeccCCccccccCCCCCCCCccEE
Q 020456 235 TLDCLPSLTSFCLGNYALEFPSLEQVVVRQCPKMKIFSQGVLDTPMLNKV 284 (326)
Q Consensus 235 ~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~~L~~L 284 (326)
++.++ .++.++.. ..+++|++|+++++ .++.++. +..+++|++|
T Consensus 156 ~l~~n-~l~~l~~l---~~l~~L~~L~ls~N-~i~~i~~-l~~L~~L~~L 199 (199)
T d2omxa2 156 NFSSN-QVTDLKPL---ANLTTLERLDISSN-KVSDISV-LAKLTNLESL 199 (199)
T ss_dssp ECCSS-CCCCCGGG---TTCTTCCEEECCSS-CCCCCGG-GGGCTTCSEE
T ss_pred ccccc-cccCCccc---cCCCCCCEEECCCC-CCCCCcc-ccCCCCCCcC
Confidence 98886 45655431 26789999999887 4776653 4467788765
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=98.90 E-value=8.5e-09 Score=84.35 Aligned_cols=165 Identities=18% Similarity=0.259 Sum_probs=112.6
Q ss_pred CCCccEEEcccCCCcccccccCCCCCCCCCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccCcCcceecccccccc
Q 020456 48 FCDIEYLQLSDFPCLKEIWHGQALPVSFFNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNCDSIEEVLHLEELNA 127 (326)
Q Consensus 48 ~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~ 127 (326)
+.+|+.|++.++.- ..+ .+ ...+++|++|+++++ +++++.+ +..+++|++|+++++. ++.+...
T Consensus 45 L~~L~~L~l~~~~i-~~l-~~----l~~l~~L~~L~L~~n-~i~~l~~---~~~l~~L~~L~l~~n~-i~~l~~l----- 108 (210)
T d1h6ta2 45 LNSIDQIIANNSDI-KSV-QG----IQYLPNVTKLFLNGN-KLTDIKP---LANLKNLGWLFLDENK-VKDLSSL----- 108 (210)
T ss_dssp HHTCCEEECTTSCC-CCC-TT----GGGCTTCCEEECCSS-CCCCCGG---GTTCTTCCEEECCSSC-CCCGGGG-----
T ss_pred hcCccEEECcCCCC-CCc-hh----HhhCCCCCEEeCCCc-cccCccc---cccCcccccccccccc-ccccccc-----
Confidence 66889999987643 321 12 256899999999998 4666543 5689999999999874 4443211
Q ss_pred ccCcCCCCCCCccEEecCCCccccccccccccccccccccEEeEecCCCCCccCcchhhhccCCCCCCceEEecccCccc
Q 020456 128 DKEHISPLFPKLSELRLIDLPKLKRFCNFTENIIEMLMLWSLTIENCPNMETFVSNSVVHVTTDNKKPQKLTLEENFLLA 207 (326)
Q Consensus 128 ~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~L~~L~l~~C~~l~~~~~~~~~~~~~~~~~L~~L~i~~~c~~l 207 (326)
..+++|+.|.+.++.. ..++ .+..+++|+.+.+.++ .+.... ....++ +|+.+++ .++. +
T Consensus 109 ------~~l~~L~~L~l~~~~~-~~~~----~l~~l~~l~~l~~~~n-~l~~~~---~~~~l~---~L~~l~l-~~n~-l 168 (210)
T d1h6ta2 109 ------KDLKKLKSLSLEHNGI-SDIN----GLVHLPQLESLYLGNN-KITDIT---VLSRLT---KLDTLSL-EDNQ-I 168 (210)
T ss_dssp ------TTCTTCCEEECTTSCC-CCCG----GGGGCTTCCEEECCSS-CCCCCG---GGGGCT---TCSEEEC-CSSC-C
T ss_pred ------cccccccccccccccc-cccc----cccccccccccccccc-cccccc---cccccc---ccccccc-cccc-c
Confidence 1356899999988753 3333 4566788999998775 455442 223455 8999999 7764 4
Q ss_pred ceeccccccccCccccceeeecccceeecccCCCcceecCCCccccCCcccEEEecc
Q 020456 208 DQVQPLFDEKVGEEVKGCIVFERMNYLTLDCLPSLTSFCLGNYALEFPSLEQVVVRQ 264 (326)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~ 264 (326)
+.+.+ ...+++|+.|++.++ .++.++. . ..+++|++|++++
T Consensus 169 ~~i~~------------l~~l~~L~~L~Ls~N-~i~~l~~--l-~~l~~L~~L~Ls~ 209 (210)
T d1h6ta2 169 SDIVP------------LAGLTKLQNLYLSKN-HISDLRA--L-AGLKNLDVLELFS 209 (210)
T ss_dssp CCCGG------------GTTCTTCCEEECCSS-CCCBCGG--G-TTCTTCSEEEEEE
T ss_pred ccccc------------ccCCCCCCEEECCCC-CCCCChh--h-cCCCCCCEEEccC
Confidence 44322 235689999999987 5777753 2 2688999998864
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.88 E-value=8.9e-09 Score=87.33 Aligned_cols=175 Identities=18% Similarity=0.134 Sum_probs=110.8
Q ss_pred CCccEEEcccCCCcccccccCCCCCCCCCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccCcCcceeccccccccc
Q 020456 49 CDIEYLQLSDFPCLKEIWHGQALPVSFFNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNCDSIEEVLHLEELNAD 128 (326)
Q Consensus 49 ~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~ 128 (326)
++|++|++++. .+..++... + ..+++|++|+++++ +++.+.. ...+++|++|+++++. +.....
T Consensus 31 ~~l~~L~Ls~N-~i~~l~~~~-f--~~l~~L~~L~L~~N-~l~~l~~---~~~l~~L~~L~Ls~N~-l~~~~~------- 94 (266)
T d1p9ag_ 31 KDTTILHLSEN-LLYTFSLAT-L--MPYTRLTQLNLDRA-ELTKLQV---DGTLPVLGTLDLSHNQ-LQSLPL------- 94 (266)
T ss_dssp TTCCEEECTTS-CCSEEEGGG-G--TTCTTCCEEECTTS-CCCEEEC---CSCCTTCCEEECCSSC-CSSCCC-------
T ss_pred cCCCEEECcCC-cCCCcCHHH-h--hccccccccccccc-ccccccc---cccccccccccccccc-cccccc-------
Confidence 57888888864 345544332 1 45788888888887 4665543 3468888888888764 322211
Q ss_pred cCcCCCCCCCccEEecCCCccccccccccccccccccccEEeEecCCCCCccCcchhhhccCCCCCCceEEecccCcccc
Q 020456 129 KEHISPLFPKLSELRLIDLPKLKRFCNFTENIIEMLMLWSLTIENCPNMETFVSNSVVHVTTDNKKPQKLTLEENFLLAD 208 (326)
Q Consensus 129 ~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~L~~L~l~~C~~l~~~~~~~~~~~~~~~~~L~~L~i~~~c~~l~ 208 (326)
....+++|+.|+++++..- .++.. ....+.+++.|.+.++ .+..++ ......+. +|+.+++ .++. ++
T Consensus 95 ---~~~~l~~L~~L~l~~~~~~-~~~~~--~~~~l~~l~~L~l~~n-~l~~l~-~~~~~~l~---~l~~l~l-~~N~-l~ 161 (266)
T d1p9ag_ 95 ---LGQTLPALTVLDVSFNRLT-SLPLG--ALRGLGELQELYLKGN-ELKTLP-PGLLTPTP---KLEKLSL-ANNN-LT 161 (266)
T ss_dssp ---CTTTCTTCCEEECCSSCCC-CCCSS--TTTTCTTCCEEECTTS-CCCCCC-TTTTTTCT---TCCEEEC-TTSC-CS
T ss_pred ---ccccccccccccccccccc-eeecc--cccccccccccccccc-ccceec-cccccccc---cchhccc-cccc-cc
Confidence 1123568888888876533 22221 3456778888888775 555553 33333445 7888888 6653 44
Q ss_pred eeccccccccCccccceeeecccceeecccCCCcceecCCCccccCCcccEEEeccC
Q 020456 209 QVQPLFDEKVGEEVKGCIVFERMNYLTLDCLPSLTSFCLGNYALEFPSLEQVVVRQC 265 (326)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c 265 (326)
.+.+.. ...+++|++|++.+. .++.+|.... ..++|+.|.+++-
T Consensus 162 ~~~~~~----------~~~l~~L~~L~Ls~N-~L~~lp~~~~--~~~~L~~L~L~~N 205 (266)
T d1p9ag_ 162 ELPAGL----------LNGLENLDTLLLQEN-SLYTIPKGFF--GSHLLPFAFLHGN 205 (266)
T ss_dssp CCCTTT----------TTTCTTCCEEECCSS-CCCCCCTTTT--TTCCCSEEECCSC
T ss_pred ccCccc----------cccccccceeecccC-CCcccChhHC--CCCCCCEEEecCC
Confidence 443221 234678888988885 4778876554 6788888888763
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.84 E-value=7.5e-08 Score=79.99 Aligned_cols=183 Identities=13% Similarity=0.136 Sum_probs=121.0
Q ss_pred CCCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccCcCcceeccccccccccCcCCCCCCCccEEecCCCccccccc
Q 020456 75 FFNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNCDSIEEVLHLEELNADKEHISPLFPKLSELRLIDLPKLKRFC 154 (326)
Q Consensus 75 ~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~ 154 (326)
.++++++|+++++ +++.+++. .+.++++|++|+++++.....+. .... ...++++++.+..+.++..+.
T Consensus 27 l~~~l~~L~Ls~n-~i~~l~~~-~f~~l~~L~~L~ls~n~~~~~i~-~~~f--------~~l~~l~~l~~~~~n~l~~~~ 95 (242)
T d1xwdc1 27 LPRNAIELRFVLT-KLRVIQKG-AFSGFGDLEKIEISQNDVLEVIE-ADVF--------SNLPKLHEIRIEKANNLLYIN 95 (242)
T ss_dssp SCSCCSEEEEESC-CCCEECTT-TTTTCTTCCEEEEESCTTCCEEC-SSSE--------ESCTTCCEEEEECCTTCCEEC
T ss_pred CCCCCCEEECcCC-cCCccChh-Hhhccchhhhhhhccccccceee-cccc--------ccccccccccccccccccccc
Confidence 3479999999997 47766554 36789999999999987655332 1111 124688999988888887765
Q ss_pred cccccccccccccEEeEecCCCCCccCcchhhhccCCCCCCceEEec-ccCcccceeccccccccCccccceeee-cccc
Q 020456 155 NFTENIIEMLMLWSLTIENCPNMETFVSNSVVHVTTDNKKPQKLTLE-ENFLLADQVQPLFDEKVGEEVKGCIVF-ERMN 232 (326)
Q Consensus 155 ~~~~~~~~~~~L~~L~l~~C~~l~~~~~~~~~~~~~~~~~L~~L~i~-~~c~~l~~~~~~~~~~~~~~~~~~~~l-~~L~ 232 (326)
.. .+..+++|+.+.+.++ ++.......... +++.+... .....+..+.... ...+ ..++
T Consensus 96 ~~--~~~~l~~L~~l~l~~~-~l~~~~~~~~~~------~l~~l~~~~~~n~~l~~i~~~~----------~~~~~~~l~ 156 (242)
T d1xwdc1 96 PE--AFQNLPNLQYLLISNT-GIKHLPDVHKIH------SLQKVLLDIQDNINIHTIERNS----------FVGLSFESV 156 (242)
T ss_dssp TT--SEECCTTCCEEEEESC-CCCSCCCCTTTC------BSSCEEEEEESCTTCCEECTTS----------STTSBSSCE
T ss_pred cc--cccccccccccccchh-hhcccccccccc------cccccccccccccccccccccc----------cccccccce
Confidence 42 4677899999999986 565553333222 44444430 2333344442221 0111 3566
Q ss_pred eeecccCCCcceecCCCccccCCcccEEEeccCCccccccCC-CCCCCCccEEEecccc
Q 020456 233 YLTLDCLPSLTSFCLGNYALEFPSLEQVVVRQCPKMKIFSQG-VLDTPMLNKVNVTEEE 290 (326)
Q Consensus 233 ~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~-~~~~~~L~~L~l~~c~ 290 (326)
.|++.+ ..++.++.... ..++++++...++..++.+|.. +..+++|++|+++++.
T Consensus 157 ~L~l~~-n~l~~i~~~~~--~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~ 212 (242)
T d1xwdc1 157 ILWLNK-NGIQEIHNCAF--NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTR 212 (242)
T ss_dssp EEECCS-SCCCEECTTTT--TTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSC
T ss_pred eeeccc-ccccccccccc--cchhhhccccccccccccccHHHhcCCCCCCEEECCCCc
Confidence 677765 56777776554 5677888877788889988874 4678999999998874
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=98.71 E-value=6.5e-07 Score=77.79 Aligned_cols=53 Identities=13% Similarity=0.105 Sum_probs=42.2
Q ss_pred ecccceeecccCCCcceecCCCccccCCcccEEEeccCCccccccCCCCCCCCccEEEecccc
Q 020456 228 FERMNYLTLDCLPSLTSFCLGNYALEFPSLEQVVVRQCPKMKIFSQGVLDTPMLNKVNVTEEE 290 (326)
Q Consensus 228 l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~~L~~L~l~~c~ 290 (326)
+++|++|++.+| .++.++. .+++|++|+++++ .++.+|.. +++|++|++++|+
T Consensus 283 ~~~L~~L~Ls~N-~l~~lp~-----~~~~L~~L~L~~N-~L~~l~~~---~~~L~~L~L~~N~ 335 (353)
T d1jl5a_ 283 PPSLEELNVSNN-KLIELPA-----LPPRLERLIASFN-HLAEVPEL---PQNLKQLHVEYNP 335 (353)
T ss_dssp CTTCCEEECCSS-CCSCCCC-----CCTTCCEEECCSS-CCSCCCCC---CTTCCEEECCSSC
T ss_pred CCCCCEEECCCC-ccCcccc-----ccCCCCEEECCCC-cCCccccc---cCCCCEEECcCCc
Confidence 478999999997 4666663 5679999999665 68888763 5789999999985
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=98.58 E-value=9.5e-07 Score=76.69 Aligned_cols=56 Identities=23% Similarity=0.155 Sum_probs=37.7
Q ss_pred cCCcccEEEeccCCccccccCCCCCCCCccEEEeccccCCCCccccccCchHHHHHHHHHhhhhhh
Q 020456 253 EFPSLEQVVVRQCPKMKIFSQGVLDTPMLNKVNVTEEEKDDDDEGCWEGNLNDTIKQLFNEIVSIN 318 (326)
Q Consensus 253 ~~~~L~~L~i~~c~~l~~l~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~l~~l~i~~~~~~ 318 (326)
.+++|++|++++| .++.+|.. +++|++|++++|. +. .++.. +.+|+.+.+++..+.
T Consensus 282 ~~~~L~~L~Ls~N-~l~~lp~~---~~~L~~L~L~~N~-L~--~l~~~---~~~L~~L~L~~N~L~ 337 (353)
T d1jl5a_ 282 LPPSLEELNVSNN-KLIELPAL---PPRLERLIASFNH-LA--EVPEL---PQNLKQLHVEYNPLR 337 (353)
T ss_dssp CCTTCCEEECCSS-CCSCCCCC---CTTCCEEECCSSC-CS--CCCCC---CTTCCEEECCSSCCS
T ss_pred cCCCCCEEECCCC-ccCccccc---cCCCCEEECCCCc-CC--ccccc---cCCCCEEECcCCcCC
Confidence 3679999999887 57778754 6899999998873 32 23322 235666666654443
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.43 E-value=3.6e-07 Score=71.20 Aligned_cols=58 Identities=19% Similarity=0.264 Sum_probs=31.0
Q ss_pred CCCccEEEcccCCCcccccccCCCCCCCCCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccC
Q 020456 48 FCDIEYLQLSDFPCLKEIWHGQALPVSFFNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNC 113 (326)
Q Consensus 48 ~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c 113 (326)
+++|+.|++++.. +..+. +. ..+++|++|++++|. ++.+++. ++..+++|++|+++++
T Consensus 40 l~~L~~L~Ls~N~-i~~l~-~~----~~l~~L~~L~ls~N~-i~~l~~~-~~~~l~~L~~L~L~~N 97 (162)
T d1a9na_ 40 LDQFDAIDFSDNE-IRKLD-GF----PLLRRLKTLLVNNNR-ICRIGEG-LDQALPDLTELILTNN 97 (162)
T ss_dssp TTCCSEEECCSSC-CCEEC-CC----CCCSSCCEEECCSSC-CCEECSC-HHHHCTTCCEEECCSC
T ss_pred cccCCEEECCCCC-CCccC-Cc----ccCcchhhhhccccc-ccCCCcc-ccccccccccceeccc
Confidence 5666666666543 33321 22 345666666666663 4444332 2445666666666654
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.07 E-value=5.6e-06 Score=64.19 Aligned_cols=34 Identities=12% Similarity=0.168 Sum_probs=15.8
Q ss_pred CCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccC
Q 020456 77 NNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNC 113 (326)
Q Consensus 77 ~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c 113 (326)
.++++|+++++. ++.+.. ....+++|+.|+++++
T Consensus 18 ~~lr~L~L~~n~-I~~i~~--~~~~l~~L~~L~Ls~N 51 (162)
T d1a9na_ 18 VRDRELDLRGYK-IPVIEN--LGATLDQFDAIDFSDN 51 (162)
T ss_dssp TSCEEEECTTSC-CCSCCC--GGGGTTCCSEEECCSS
T ss_pred CcCcEEECCCCC-CCccCc--cccccccCCEEECCCC
Confidence 345555555542 333321 1334555555555554
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.92 E-value=2.7e-05 Score=57.30 Aligned_cols=35 Identities=20% Similarity=0.305 Sum_probs=16.9
Q ss_pred CCCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEcc
Q 020456 75 FFNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRN 112 (326)
Q Consensus 75 ~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~ 112 (326)
.+++|++|+++++ .++.+++. +..+++|+.|++++
T Consensus 18 ~l~~L~~L~ls~N-~l~~lp~~--~~~l~~L~~L~l~~ 52 (124)
T d1dcea3 18 QLLLVTHLDLSHN-RLRALPPA--LAALRCLEVLQASD 52 (124)
T ss_dssp GGTTCCEEECCSS-CCCCCCGG--GGGCTTCCEEECCS
T ss_pred cCCCCCEEECCCC-ccCcchhh--hhhhhccccccccc
Confidence 4455555555554 24443322 34455555555554
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=97.92 E-value=2.4e-05 Score=62.15 Aligned_cols=109 Identities=17% Similarity=0.146 Sum_probs=66.2
Q ss_pred CCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccCcCcceeccccccccccCcCCCCCCCccEEecCCCcccccccc
Q 020456 76 FNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNCDSIEEVLHLEELNADKEHISPLFPKLSELRLIDLPKLKRFCN 155 (326)
Q Consensus 76 ~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~ 155 (326)
.+++++|++++.. ++...+...++.+++|++|+++++... .++. .....+++|++|++++. ++++++.
T Consensus 28 p~~l~~L~Ls~N~-i~~~~~~~~f~~l~~L~~L~L~~N~i~-~~~~---------~~~~~~~~L~~L~Ls~N-~l~~l~~ 95 (192)
T d1w8aa_ 28 PLHTTELLLNDNE-LGRISSDGLFGRLPHLVKLELKRNQLT-GIEP---------NAFEGASHIQELQLGEN-KIKEISN 95 (192)
T ss_dssp CTTCSEEECCSCC-CCSBCCSCSGGGCTTCCEEECCSSCCC-CBCT---------TTTTTCTTCCEEECCSC-CCCEECS
T ss_pred CCCCCEEEeCCCC-CcccccccccCCCceEeeeeccccccc-cccc---------cccccccccceeeeccc-cccccCH
Confidence 3678888888763 544444444677888888888775432 2211 11123457788887765 5666654
Q ss_pred ccccccccccccEEeEecCCCCCccCcchhhhccCCCCCCceEEecccC
Q 020456 156 FTENIIEMLMLWSLTIENCPNMETFVSNSVVHVTTDNKKPQKLTLEENF 204 (326)
Q Consensus 156 ~~~~~~~~~~L~~L~l~~C~~l~~~~~~~~~~~~~~~~~L~~L~i~~~c 204 (326)
. .+..+++|++|++++. .++.+++. .+..+. +|++|++ .+-
T Consensus 96 ~--~F~~l~~L~~L~L~~N-~l~~i~~~-~f~~l~---~L~~l~L-~~N 136 (192)
T d1w8aa_ 96 K--MFLGLHQLKTLNLYDN-QISCVMPG-SFEHLN---SLTSLNL-ASN 136 (192)
T ss_dssp S--SSTTCTTCCEEECCSS-CCCEECTT-SSTTCT---TCCEEEC-TTC
T ss_pred H--HHhCCCcccccccCCc-cccccCHH-HhcCCc---ccccccc-ccc
Confidence 2 3566788888888774 56666433 333444 7888877 543
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=97.91 E-value=4e-05 Score=60.77 Aligned_cols=60 Identities=8% Similarity=0.093 Sum_probs=36.0
Q ss_pred ecccceeecccCCCcceecCCCccccCCcccEEEeccCCccccccC-CCCCCCCccEEEecccc
Q 020456 228 FERMNYLTLDCLPSLTSFCLGNYALEFPSLEQVVVRQCPKMKIFSQ-GVLDTPMLNKVNVTEEE 290 (326)
Q Consensus 228 l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~-~~~~~~~L~~L~l~~c~ 290 (326)
+++|++|++.+. .++.++..... .+++|++|++++. .++.++. .+..+++|+++++++.+
T Consensus 77 ~~~L~~L~Ls~N-~l~~l~~~~F~-~l~~L~~L~L~~N-~l~~i~~~~f~~l~~L~~l~L~~N~ 137 (192)
T d1w8aa_ 77 ASHIQELQLGEN-KIKEISNKMFL-GLHQLKTLNLYDN-QISCVMPGSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp CTTCCEEECCSC-CCCEECSSSST-TCTTCCEEECCSS-CCCEECTTSSTTCTTCCEEECTTCC
T ss_pred ccccceeeeccc-cccccCHHHHh-CCCcccccccCCc-cccccCHHHhcCCcccccccccccc
Confidence 356666666653 45555554332 5677777777554 4555655 34467777777777664
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=97.84 E-value=1.9e-07 Score=75.34 Aligned_cols=127 Identities=18% Similarity=0.230 Sum_probs=67.9
Q ss_pred CccEEEccc-CCCcccccccCCCCCCCCCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccCcCcceeccccccccc
Q 020456 50 DIEYLQLSD-FPCLKEIWHGQALPVSFFNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNCDSIEEVLHLEELNAD 128 (326)
Q Consensus 50 ~L~~L~l~~-~~~l~~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~ 128 (326)
.++.+.+.+ .+.+..+.... ..+++|++|+++++ +++++. . +..+++|++|++++|. +..+.....
T Consensus 24 ~~~~~~l~~~~~~i~~l~~sl----~~L~~L~~L~Ls~n-~I~~i~-~--l~~l~~L~~L~Ls~N~-i~~i~~~~~---- 90 (198)
T d1m9la_ 24 EAEKVELHGMIPPIEKMDATL----STLKACKHLALSTN-NIEKIS-S--LSGMENLRILSLGRNL-IKKIENLDA---- 90 (198)
T ss_dssp TCSCEECCBCCTTCCCCHHHH----HHTTTCCEEECSEE-EESCCC-C--HHHHTTCCEEECCEEE-ECSCSSHHH----
T ss_pred ccceeeeecccCchhhhhhHH----hcccccceeECccc-CCCCcc-c--ccCCccccChhhcccc-ccccccccc----
Confidence 445555543 33344332222 45678888888776 355553 2 5678888888887763 333321111
Q ss_pred cCcCCCCCCCccEEecCCCccccccccccccccccccccEEeEecCCCCCccCcchhhhccCCCCCCceEEecccCc
Q 020456 129 KEHISPLFPKLSELRLIDLPKLKRFCNFTENIIEMLMLWSLTIENCPNMETFVSNSVVHVTTDNKKPQKLTLEENFL 205 (326)
Q Consensus 129 ~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~L~~L~l~~C~~l~~~~~~~~~~~~~~~~~L~~L~i~~~c~ 205 (326)
.+++|+.|++.++ .++.++ .+..+++|+.|+++++ ++..+........++ +|++|++ .+++
T Consensus 91 ------~~~~L~~L~l~~N-~i~~l~----~~~~l~~L~~L~L~~N-~i~~~~~~~~l~~l~---~L~~L~L-~~N~ 151 (198)
T d1m9la_ 91 ------VADTLEELWISYN-QIASLS----GIEKLVNLRVLYMSNN-KITNWGEIDKLAALD---KLEDLLL-AGNP 151 (198)
T ss_dssp ------HHHHCCEEECSEE-ECCCHH----HHHHHHHSSEEEESEE-ECCCHHHHHHHTTTT---TCSEEEE-CSSH
T ss_pred ------ccccccccccccc-cccccc----cccccccccccccccc-hhccccccccccCCC---ccceeec-CCCc
Confidence 1236777777664 455443 3455677777777664 344432212222344 6777777 5544
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.80 E-value=8.5e-05 Score=54.46 Aligned_cols=58 Identities=21% Similarity=0.160 Sum_probs=29.8
Q ss_pred cCCCccEEEcccCCCcccccccCCCCCCCCCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccC
Q 020456 47 GFCDIEYLQLSDFPCLKEIWHGQALPVSFFNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNC 113 (326)
Q Consensus 47 ~~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c 113 (326)
.+++|++|++++. .++.++... ..+++|+.|+++++ .++.+. . +..+++|++|+++++
T Consensus 18 ~l~~L~~L~ls~N-~l~~lp~~~----~~l~~L~~L~l~~N-~i~~l~-~--~~~l~~L~~L~l~~N 75 (124)
T d1dcea3 18 QLLLVTHLDLSHN-RLRALPPAL----AALRCLEVLQASDN-ALENVD-G--VANLPRLQELLLCNN 75 (124)
T ss_dssp GGTTCCEEECCSS-CCCCCCGGG----GGCTTCCEEECCSS-CCCCCG-G--GTTCSSCCEEECCSS
T ss_pred cCCCCCEEECCCC-ccCcchhhh----hhhhcccccccccc-cccccC-c--cccccccCeEECCCC
Confidence 4556666666543 344443322 34566666666665 344432 2 445666666666553
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.44 E-value=0.00045 Score=52.59 Aligned_cols=63 Identities=14% Similarity=0.159 Sum_probs=39.9
Q ss_pred cCCCccEEEcccCCCcccccccCCCCCCCCCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccCc
Q 020456 47 GFCDIEYLQLSDFPCLKEIWHGQALPVSFFNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNCD 114 (326)
Q Consensus 47 ~~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~ 114 (326)
.+++|++|++.+...++.+.... + ..+++|+.|+++++ +++.+.+. .+..+++|++|+++++.
T Consensus 29 ~l~~l~~L~l~~n~~l~~i~~~~-f--~~l~~L~~L~Ls~N-~l~~i~~~-~f~~l~~L~~L~Ls~N~ 91 (156)
T d2ifga3 29 GAENLTELYIENQQHLQHLELRD-L--RGLGELRNLTIVKS-GLRFVAPD-AFHFTPRLSRLNLSFNA 91 (156)
T ss_dssp SCSCCSEEECCSCSSCCEECGGG-S--CSCCCCSEEECCSS-CCCEECTT-GGGSCSCCCEEECCSSC
T ss_pred CccccCeeecCCCccccccCchh-h--ccccccCcceeecc-ccCCcccc-cccccccccceeccCCC
Confidence 46677777777666666655433 1 35677777777776 46565443 35667777777777643
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=97.43 E-value=5.9e-06 Score=71.96 Aligned_cols=257 Identities=11% Similarity=0.061 Sum_probs=138.3
Q ss_pred cCCcCCCCeeEEEecccCCcccceecCCCchhhhhhhhccccCCCccEEEcccCCCcc--cc-cccCC-C--CCCCCCCc
Q 020456 6 QGIVSTPKLHEVQVTEKNEDELRHWEGNLNSTIQKCYEEMIGFCDIEYLQLSDFPCLK--EI-WHGQA-L--PVSFFNNL 79 (326)
Q Consensus 6 ~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~--~~-~~~~~-l--~~~~~~~L 79 (326)
..+....+|++|.+.+ . .+... ....+.+.+...++|+.|++.++..-. .. ..... + ....+++|
T Consensus 25 ~~L~~~~~l~~L~Ls~--n----~i~~~---~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L 95 (344)
T d2ca6a1 25 AVLLEDDSVKEIVLSG--N----TIGTE---AARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKL 95 (344)
T ss_dssp HHHHHCSCCCEEECTT--S----EECHH---HHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTC
T ss_pred HHHhhCCCCCEEECcC--C----cCCHH---HHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCc
Confidence 3345678899999882 1 11111 111222235568999999998764311 10 00000 0 01356899
Q ss_pred cEEEEecCCCCCcCCch---hHHhhCCCCCEEEEccCcCcceecc--cccccc-ccCcCCCCCCCccEEecCCCcccc--
Q 020456 80 EELEVDDCTNMSSAIPA---NLLRCLNNLRCLEVRNCDSIEEVLH--LEELNA-DKEHISPLFPKLSELRLIDLPKLK-- 151 (326)
Q Consensus 80 ~~L~l~~c~~l~~~~~~---~~~~~l~~L~~L~l~~c~~l~~l~~--~~~~~~-~~~~~~~~~~~L~~L~l~~c~~L~-- 151 (326)
++|++++|. ++..... ..+...++|++|.+++|..-..-.. ...+.. .........+.|+.+.+++.. +.
T Consensus 96 ~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~-i~~~ 173 (344)
T d2ca6a1 96 HTVRLSDNA-FGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR-LENG 173 (344)
T ss_dssp CEEECCSCC-CCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC-CTGG
T ss_pred ccccccccc-cccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeeccccc-cccc
Confidence 999999984 4443322 2355789999999998752110000 000000 000001134588888887642 22
Q ss_pred ---ccccccccccccccccEEeEecCCCCCccCcc----hhhhccCCCCCCceEEecccCcccceeccccccccCccccc
Q 020456 152 ---RFCNFTENIIEMLMLWSLTIENCPNMETFVSN----SVVHVTTDNKKPQKLTLEENFLLADQVQPLFDEKVGEEVKG 224 (326)
Q Consensus 152 ---~~~~~~~~~~~~~~L~~L~l~~C~~l~~~~~~----~~~~~~~~~~~L~~L~i~~~c~~l~~~~~~~~~~~~~~~~~ 224 (326)
.+.. .+..++.|++|++++|. +.+.... ......+ +|+.|++ .++. +...... .....
T Consensus 174 ~~~~l~~---~l~~~~~L~~L~L~~n~-i~~~g~~~~l~~~l~~~~---~L~~L~L-s~N~-i~~~g~~------~L~~~ 238 (344)
T d2ca6a1 174 SMKEWAK---TFQSHRLLHTVKMVQNG-IRPEGIEHLLLEGLAYCQ---ELKVLDL-QDNT-FTHLGSS------ALAIA 238 (344)
T ss_dssp GHHHHHH---HHHHCTTCCEEECCSSC-CCHHHHHHHHHTTGGGCT---TCCEEEC-CSSC-CHHHHHH------HHHHH
T ss_pred ccccccc---hhhhhhhhccccccccc-ccccccccchhhhhcchh---hhccccc-cccc-ccccccc------ccccc
Confidence 2221 34567899999999873 4432111 1122344 8999999 7765 2211000 01111
Q ss_pred eeeecccceeecccCCCccee-----cCCCccccCCcccEEEeccCCcccc-----ccCCCC-CCCCccEEEecccc
Q 020456 225 CIVFERMNYLTLDCLPSLTSF-----CLGNYALEFPSLEQVVVRQCPKMKI-----FSQGVL-DTPMLNKVNVTEEE 290 (326)
Q Consensus 225 ~~~l~~L~~L~l~~c~~l~~~-----~~~~~~~~~~~L~~L~i~~c~~l~~-----l~~~~~-~~~~L~~L~l~~c~ 290 (326)
+..++.|++|++.+|. ++.. .........+.|++|+++++. ++. +...+. ..+.|++|+++++.
T Consensus 239 l~~~~~L~~L~Ls~n~-i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~-i~~~~~~~l~~~l~~~~~~L~~L~l~~N~ 313 (344)
T d2ca6a1 239 LKSWPNLRELGLNDCL-LSARGAAAVVDAFSKLENIGLQTLRLQYNE-IELDAVRTLKTVIDEKMPDLLFLELNGNR 313 (344)
T ss_dssp GGGCTTCCEEECTTCC-CCHHHHHHHHHHHHTCSSCCCCEEECCSSC-CBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred ccccccchhhhhhcCc-cCchhhHHHHHHhhhccCCCCCEEECCCCc-CChHHHHHHHHHHHccCCCCCEEECCCCc
Confidence 3456889999999985 3221 110000134689999998765 432 333332 46899999998863
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=97.34 E-value=3.6e-06 Score=67.59 Aligned_cols=105 Identities=11% Similarity=0.110 Sum_probs=51.2
Q ss_pred CCCccEEecCCCccccccccccccccccccccEEeEecCCCCCccCcchhhhccCCCCCCceEEecccCcccceeccccc
Q 020456 136 FPKLSELRLIDLPKLKRFCNFTENIIEMLMLWSLTIENCPNMETFVSNSVVHVTTDNKKPQKLTLEENFLLADQVQPLFD 215 (326)
Q Consensus 136 ~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~L~~L~l~~C~~l~~~~~~~~~~~~~~~~~L~~L~i~~~c~~l~~~~~~~~ 215 (326)
+++|+.|+++++ +++.++ .+..+++|+.|++++| .++.++. +..... +|+.|++ .++ .++.+.+
T Consensus 47 L~~L~~L~Ls~n-~I~~i~----~l~~l~~L~~L~Ls~N-~i~~i~~--~~~~~~---~L~~L~l-~~N-~i~~l~~--- 110 (198)
T d1m9la_ 47 LKACKHLALSTN-NIEKIS----SLSGMENLRILSLGRN-LIKKIEN--LDAVAD---TLEELWI-SYN-QIASLSG--- 110 (198)
T ss_dssp TTTCCEEECSEE-EESCCC----CHHHHTTCCEEECCEE-EECSCSS--HHHHHH---HCCEEEC-SEE-ECCCHHH---
T ss_pred ccccceeECccc-CCCCcc----cccCCccccChhhccc-ccccccc--cccccc---ccccccc-ccc-ccccccc---
Confidence 346666666654 344443 3455666777777665 3444421 111222 5666666 544 2333211
Q ss_pred cccCccccceeeecccceeecccCCCcceecCCCccccCCcccEEEeccCC
Q 020456 216 EKVGEEVKGCIVFERMNYLTLDCLPSLTSFCLGNYALEFPSLEQVVVRQCP 266 (326)
Q Consensus 216 ~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~ 266 (326)
...+++|+.|++.++ .++.++....-..+++|++|.+++++
T Consensus 111 ---------~~~l~~L~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~L~~N~ 151 (198)
T d1m9la_ 111 ---------IEKLVNLRVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGNP 151 (198)
T ss_dssp ---------HHHHHHSSEEEESEE-ECCCHHHHHHHTTTTTCSEEEECSSH
T ss_pred ---------ccccccccccccccc-hhccccccccccCCCccceeecCCCc
Confidence 223466666666653 22322210001145667777666654
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.33 E-value=0.00062 Score=51.77 Aligned_cols=83 Identities=12% Similarity=0.066 Sum_probs=50.3
Q ss_pred CCceEEecccCcccceeccccccccCccccceeeecccceeecccCCCcceecCCCccccCCcccEEEeccCCccccccC
Q 020456 194 KPQKLTLEENFLLADQVQPLFDEKVGEEVKGCIVFERMNYLTLDCLPSLTSFCLGNYALEFPSLEQVVVRQCPKMKIFSQ 273 (326)
Q Consensus 194 ~L~~L~i~~~c~~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~ 273 (326)
+|++|++ .+.+.++.+.... ...+++|+.|++.+. .++.++..... .+++|++|++++ ..++.+|.
T Consensus 32 ~l~~L~l-~~n~~l~~i~~~~----------f~~l~~L~~L~Ls~N-~l~~i~~~~f~-~l~~L~~L~Ls~-N~l~~l~~ 97 (156)
T d2ifga3 32 NLTELYI-ENQQHLQHLELRD----------LRGLGELRNLTIVKS-GLRFVAPDAFH-FTPRLSRLNLSF-NALESLSW 97 (156)
T ss_dssp CCSEEEC-CSCSSCCEECGGG----------SCSCCCCSEEECCSS-CCCEECTTGGG-SCSCCCEEECCS-SCCSCCCS
T ss_pred ccCeeec-CCCccccccCchh----------hccccccCcceeecc-ccCCccccccc-ccccccceeccC-CCCcccCh
Confidence 6666666 5555555553321 234566777777663 46666554332 667777777754 34666777
Q ss_pred CCCCCCCccEEEecccc
Q 020456 274 GVLDTPMLNKVNVTEEE 290 (326)
Q Consensus 274 ~~~~~~~L~~L~l~~c~ 290 (326)
+.....+|++|++++.+
T Consensus 98 ~~~~~~~l~~L~L~~Np 114 (156)
T d2ifga3 98 KTVQGLSLQELVLSGNP 114 (156)
T ss_dssp TTTCSCCCCEEECCSSC
T ss_pred hhhccccccccccCCCc
Confidence 65555678888887664
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=96.71 E-value=0.00031 Score=60.62 Aligned_cols=228 Identities=12% Similarity=0.066 Sum_probs=123.0
Q ss_pred hhhccccCCCccEEEcccCCCcccccccCCCCCCCCCCccEEEEecCCCC--CcCCc------hhHHhhCCCCCEEEEcc
Q 020456 41 CYEEMIGFCDIEYLQLSDFPCLKEIWHGQALPVSFFNNLEELEVDDCTNM--SSAIP------ANLLRCLNNLRCLEVRN 112 (326)
Q Consensus 41 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~L~~L~l~~c~~l--~~~~~------~~~~~~l~~L~~L~l~~ 112 (326)
+...+....+|++|++++..--.+-+....-.....++|+.|.+.++..- ....+ ...+..+++|++|++++
T Consensus 23 l~~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~ 102 (344)
T d2ca6a1 23 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD 102 (344)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred HHHHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccc
Confidence 33445568899999998753211111110001145689999999987421 11111 11245689999999998
Q ss_pred CcCcceeccccccccccCcCCCCCCCccEEecCCCccccc-----cccc------cccccccccccEEeEecCCCCCccC
Q 020456 113 CDSIEEVLHLEELNADKEHISPLFPKLSELRLIDLPKLKR-----FCNF------TENIIEMLMLWSLTIENCPNMETFV 181 (326)
Q Consensus 113 c~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~-----~~~~------~~~~~~~~~L~~L~l~~C~~l~~~~ 181 (326)
|..-.. +.... .......++|+.|.+.++. +.. +... .......+.|+.+.+.+. .+.+..
T Consensus 103 n~i~~~-----~~~~l-~~~l~~~~~L~~L~l~~n~-l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n-~i~~~~ 174 (344)
T d2ca6a1 103 NAFGPT-----AQEPL-IDFLSKHTPLEHLYLHNNG-LGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN-RLENGS 174 (344)
T ss_dssp CCCCTT-----THHHH-HHHHHHCTTCCEEECCSSC-CHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSS-CCTGGG
T ss_pred cccccc-----cccch-hhhhcccccchheeccccc-ccccccccccccccccccccccccCcccceeecccc-cccccc
Confidence 742111 00000 0001124689999998874 221 0000 001134578889988774 444332
Q ss_pred cchh---hhccCCCCCCceEEecccCcccceeccccccccCccccceeeecccceeecccCCCccee-----cCCCcccc
Q 020456 182 SNSV---VHVTTDNKKPQKLTLEENFLLADQVQPLFDEKVGEEVKGCIVFERMNYLTLDCLPSLTSF-----CLGNYALE 253 (326)
Q Consensus 182 ~~~~---~~~~~~~~~L~~L~i~~~c~~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~-----~~~~~~~~ 253 (326)
...+ ..... .|++|++ ..|.--..-... .........++|+.|++.+++ ++.. ... . ..
T Consensus 175 ~~~l~~~l~~~~---~L~~L~L-~~n~i~~~g~~~------~l~~~l~~~~~L~~L~Ls~N~-i~~~g~~~L~~~-l-~~ 241 (344)
T d2ca6a1 175 MKEWAKTFQSHR---LLHTVKM-VQNGIRPEGIEH------LLLEGLAYCQELKVLDLQDNT-FTHLGSSALAIA-L-KS 241 (344)
T ss_dssp HHHHHHHHHHCT---TCCEEEC-CSSCCCHHHHHH------HHHTTGGGCTTCCEEECCSSC-CHHHHHHHHHHH-G-GG
T ss_pred cccccchhhhhh---hhccccc-cccccccccccc------chhhhhcchhhhccccccccc-cccccccccccc-c-cc
Confidence 2222 22344 8999999 887532110000 000113356889999999865 3221 111 1 26
Q ss_pred CCcccEEEeccCCcccc-----ccCCCC--CCCCccEEEecccc
Q 020456 254 FPSLEQVVVRQCPKMKI-----FSQGVL--DTPMLNKVNVTEEE 290 (326)
Q Consensus 254 ~~~L~~L~i~~c~~l~~-----l~~~~~--~~~~L~~L~l~~c~ 290 (326)
+++|++|.+++|. +.. +..++. ..+.|++|+++++.
T Consensus 242 ~~~L~~L~Ls~n~-i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~ 284 (344)
T d2ca6a1 242 WPNLRELGLNDCL-LSARGAAAVVDAFSKLENIGLQTLRLQYNE 284 (344)
T ss_dssp CTTCCEEECTTCC-CCHHHHHHHHHHHHTCSSCCCCEEECCSSC
T ss_pred cccchhhhhhcCc-cCchhhHHHHHHhhhccCCCCCEEECCCCc
Confidence 8899999999986 322 222221 24689999999884
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.92 E-value=0.001 Score=58.76 Aligned_cols=13 Identities=15% Similarity=0.261 Sum_probs=7.3
Q ss_pred CCCccEEEcccCC
Q 020456 48 FCDIEYLQLSDFP 60 (326)
Q Consensus 48 ~~~L~~L~l~~~~ 60 (326)
++++++|++.+|.
T Consensus 26 l~~l~~L~L~~~~ 38 (460)
T d1z7xw1 26 LQQCQVVRLDDCG 38 (460)
T ss_dssp HTTCSEEEEESSC
T ss_pred CCCCCEEEeCCCC
Confidence 4555566665553
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.57 E-value=0.0026 Score=55.97 Aligned_cols=116 Identities=18% Similarity=0.272 Sum_probs=70.1
Q ss_pred CCccEEEcccCCCccc-ccccCCCCCCCCCCccEEEEecCCCCCcCCch---hHHhhCCCCCEEEEccCcCcceeccccc
Q 020456 49 CDIEYLQLSDFPCLKE-IWHGQALPVSFFNNLEELEVDDCTNMSSAIPA---NLLRCLNNLRCLEVRNCDSIEEVLHLEE 124 (326)
Q Consensus 49 ~~L~~L~l~~~~~l~~-~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~---~~~~~l~~L~~L~l~~c~~l~~l~~~~~ 124 (326)
++|++|+++ |.++.. -|... ...++++++|++.+|. +++.... ..++.+++|++|+++++. +.+. +
T Consensus 2 ~~l~~ld~~-~~~i~~~~~~~l---~~~l~~l~~L~L~~~~-i~~~~~~~l~~~L~~~~~L~~LdLs~N~-i~~~----~ 71 (460)
T d1z7xw1 2 LDIQSLDIQ-CEELSDARWAEL---LPLLQQCQVVRLDDCG-LTEARCKDISSALRVNPALAELNLRSNE-LGDV----G 71 (460)
T ss_dssp EEEEEEEEE-SCCCCHHHHHHH---HHHHTTCSEEEEESSC-CCHHHHHHHHHHHHTCTTCCEEECTTCC-CHHH----H
T ss_pred CCCCEEEee-CCcCChHHHHHH---HHhCCCCCEEEeCCCC-CCHHHHHHHHHHHhcCCCCCEEECcCCc-CChH----H
Confidence 479999996 455543 23332 1457999999999994 6543221 235789999999999874 3211 1
Q ss_pred cccccCcCCCCCCCccEEecCCCcccccccc--ccccccccccccEEeEecCC
Q 020456 125 LNADKEHISPLFPKLSELRLIDLPKLKRFCN--FTENIIEMLMLWSLTIENCP 175 (326)
Q Consensus 125 ~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~--~~~~~~~~~~L~~L~l~~C~ 175 (326)
.............+|++|++++|. ++.... ....+..+++|++|+++++.
T Consensus 72 ~~~l~~~l~~~~~~L~~L~L~~n~-it~~~~~~l~~~l~~~~~L~~L~L~~N~ 123 (460)
T d1z7xw1 72 VHCVLQGLQTPSCKIQKLSLQNCC-LTGAGCGVLSSTLRTLPTLQELHLSDNL 123 (460)
T ss_dssp HHHHHHTTCSTTCCCCEEECTTSC-CBGGGHHHHHHHTTSCTTCCEEECCSSB
T ss_pred HHHHHHHHhcCCCCCCEEECCCCC-ccccccccccchhhcccccccccccccc
Confidence 000000011123489999999985 543210 00134567899999998863
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.37 E-value=0.0093 Score=45.13 Aligned_cols=36 Identities=14% Similarity=0.231 Sum_probs=16.9
Q ss_pred CCCccEEEEecCCCCCcCCc-hhHHhhCCCCCEEEEcc
Q 020456 76 FNNLEELEVDDCTNMSSAIP-ANLLRCLNNLRCLEVRN 112 (326)
Q Consensus 76 ~~~L~~L~l~~c~~l~~~~~-~~~~~~l~~L~~L~l~~ 112 (326)
+++|++|+++++ +++++.+ ...++.+++|+.|++++
T Consensus 64 ~~~L~~L~Ls~N-~i~~l~~~~~~~~~l~~L~~L~Ls~ 100 (162)
T d1koha1 64 IPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSG 100 (162)
T ss_dssp CTTCCCCCCCSS-CCCCCSGGGTHHHHSTTCCCCCCTT
T ss_pred CCCCCEeeCCCc-cccCCchhHHHHhhCCccccccccc
Confidence 455555555555 2333321 12244555555555554
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=92.78 E-value=0.0057 Score=46.63 Aligned_cols=37 Identities=8% Similarity=0.016 Sum_probs=20.3
Q ss_pred cCCcccEEEeccCC--cc-----ccccCCCCCCCCccEEEeccc
Q 020456 253 EFPSLEQVVVRQCP--KM-----KIFSQGVLDTPMLNKVNVTEE 289 (326)
Q Consensus 253 ~~~~L~~L~i~~c~--~l-----~~l~~~~~~~~~L~~L~l~~c 289 (326)
..++|++|++.++. .+ ..+...+..-++|+++.+++.
T Consensus 98 ~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~ 141 (167)
T d1pgva_ 98 VTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA 141 (167)
T ss_dssp TTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred hCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCC
Confidence 34567777775432 12 123333344578888887654
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=92.21 E-value=0.0042 Score=47.25 Aligned_cols=37 Identities=11% Similarity=0.003 Sum_probs=20.5
Q ss_pred cCCcccEEEeccCC-cccc-----ccCCCCCCCCccEEEeccc
Q 020456 253 EFPSLEQVVVRQCP-KMKI-----FSQGVLDTPMLNKVNVTEE 289 (326)
Q Consensus 253 ~~~~L~~L~i~~c~-~l~~-----l~~~~~~~~~L~~L~l~~c 289 (326)
..++|+.+++..+. .+.. +...+...+.|++|++...
T Consensus 100 ~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~ 142 (166)
T d1io0a_ 100 SNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT 142 (166)
T ss_dssp GCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred hCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCC
Confidence 45566666664332 2322 3334445678888887654
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=91.81 E-value=0.035 Score=41.84 Aligned_cols=66 Identities=14% Similarity=0.155 Sum_probs=31.3
Q ss_pred CCCccEEEcccCCCccc-ccccCCCCCCCCCCccEEEEecCCCCCcCCch---hHHhhCCCCCEEEEccCc
Q 020456 48 FCDIEYLQLSDFPCLKE-IWHGQALPVSFFNNLEELEVDDCTNMSSAIPA---NLLRCLNNLRCLEVRNCD 114 (326)
Q Consensus 48 ~~~L~~L~l~~~~~l~~-~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~---~~~~~l~~L~~L~l~~c~ 114 (326)
.+.|++|++.+...+.. .+....-.....++|++|++++| .+++.... ..++..+.++.+++.+|.
T Consensus 16 ~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n-~l~~~~~~~L~~~l~~~~~l~~l~l~~~~ 85 (166)
T d1io0a_ 16 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVESNF 85 (166)
T ss_dssp CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCSSC
T ss_pred CCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCC-cccHHHHHHHHHHHhhcccchhhhhcccc
Confidence 57777777776544331 11000000124466777777766 33332111 123455666666665543
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=91.55 E-value=0.033 Score=42.11 Aligned_cols=13 Identities=8% Similarity=0.010 Sum_probs=7.4
Q ss_pred ccccccEEeEecC
Q 020456 162 EMLMLWSLTIENC 174 (326)
Q Consensus 162 ~~~~L~~L~l~~C 174 (326)
..+.|++|+++++
T Consensus 98 ~n~sL~~L~l~~n 110 (167)
T d1pgva_ 98 VTQSIVEFKADNQ 110 (167)
T ss_dssp TTCCCSEEECCCC
T ss_pred hCCcCCEEECCCC
Confidence 3456666666543
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.96 E-value=0.1 Score=38.97 Aligned_cols=90 Identities=18% Similarity=0.082 Sum_probs=53.5
Q ss_pred cCCCccEEEcccCCCcccccccCCCCCCCCCCccEEEEecCCCCCcCCchhHHhhCCCCCEEEEccCcCcceeccccccc
Q 020456 47 GFCDIEYLQLSDFPCLKEIWHGQALPVSFFNNLEELEVDDCTNMSSAIPANLLRCLNNLRCLEVRNCDSIEEVLHLEELN 126 (326)
Q Consensus 47 ~~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~ 126 (326)
.+++|++|++++..- ..+.... .....+++|+.|+++++ .++++.....++ ..+|++|++.+++-.........
T Consensus 63 ~~~~L~~L~Ls~N~i-~~l~~~~-~~~~~l~~L~~L~Ls~N-~i~~l~~l~~l~-~~~L~~L~L~~Npl~~~~~~~~~-- 136 (162)
T d1koha1 63 NIPELLSLNLSNNRL-YRLDDMS-SIVQKAPNLKILNLSGN-ELKSERELDKIK-GLKLEELWLDGNSLSDTFRDQST-- 136 (162)
T ss_dssp HCTTCCCCCCCSSCC-CCCSGGG-THHHHSTTCCCCCCTTS-CCCCGGGHHHHT-TCCCSSCCCTTSTTSSSSSSHHH--
T ss_pred hCCCCCEeeCCCccc-cCCchhH-HHHhhCCcccccccccC-ccccchhhhhhh-ccccceeecCCCCcCcCcccchh--
Confidence 489999999997643 3222111 00145799999999997 466665443333 45799999998764321110000
Q ss_pred cccCcCCCCCCCccEEe
Q 020456 127 ADKEHISPLFPKLSELR 143 (326)
Q Consensus 127 ~~~~~~~~~~~~L~~L~ 143 (326)
....+...+|+|+.|+
T Consensus 137 -y~~~i~~~~P~L~~LD 152 (162)
T d1koha1 137 -YISAIRERFPKLLRLD 152 (162)
T ss_dssp -HHHHHHTTSTTCCEET
T ss_pred -HHHHHHHHCCCCCEEC
Confidence 0011234678999886
|