Citrus Sinensis ID: 020464
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 326 | ||||||
| 224101445 | 419 | magnesium transporter [Populus trichocar | 0.996 | 0.775 | 0.759 | 1e-138 | |
| 224108880 | 419 | magnesium transporter [Populus trichocar | 0.984 | 0.766 | 0.753 | 1e-134 | |
| 255542018 | 460 | RNA splicing protein mrs2, mitochondrial | 0.996 | 0.706 | 0.751 | 1e-134 | |
| 225423464 | 421 | PREDICTED: magnesium transporter MRS2-5 | 0.996 | 0.771 | 0.722 | 1e-129 | |
| 356499897 | 376 | PREDICTED: magnesium transporter MRS2-5- | 0.926 | 0.803 | 0.720 | 1e-117 | |
| 297738091 | 349 | unnamed protein product [Vitis vinifera] | 0.785 | 0.733 | 0.803 | 1e-114 | |
| 449452845 | 380 | PREDICTED: magnesium transporter MRS2-5- | 0.880 | 0.755 | 0.712 | 1e-111 | |
| 449523311 | 380 | PREDICTED: magnesium transporter MRS2-5- | 0.874 | 0.75 | 0.714 | 1e-111 | |
| 357487747 | 405 | Magnesium transporter [Medicago truncatu | 0.914 | 0.735 | 0.691 | 1e-108 | |
| 15227679 | 421 | magnesium transporter MRS2-5 [Arabidopsi | 0.993 | 0.769 | 0.677 | 1e-108 |
| >gi|224101445|ref|XP_002312283.1| magnesium transporter [Populus trichocarpa] gi|222852103|gb|EEE89650.1| magnesium transporter [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 497 bits (1279), Expect = e-138, Method: Compositional matrix adjust.
Identities = 250/329 (75%), Positives = 280/329 (85%), Gaps = 4/329 (1%)
Query: 1 MGESRGPFLRAFIPGSTSSDDTGRLNLDARGNRGSHSVGTKNRGHA--SRSWIKIDQDGN 58
M E +G + A +P SS RLNLD GNRGS G K RGH +RSWIKIDQDGN
Sbjct: 1 MEEFQGLHVPAGVPEPASSHGNVRLNLDGYGNRGSGFPGLKKRGHGHGNRSWIKIDQDGN 60
Query: 59 FEILELDKTTIMRHCSLPARDLRLLDPLFIYPSTILGREKAIVVSLVQIRCIITADEVIL 118
+ILELDK TIMRHCSLP+RDLRLLDPLFIYPSTILGREKAIVVSL QIRCIITADEVIL
Sbjct: 61 SKILELDKATIMRHCSLPSRDLRLLDPLFIYPSTILGREKAIVVSLEQIRCIITADEVIL 120
Query: 119 MNSLDGCVVQYYLELCKRLQTNKDQADDLPFEFRALELALELTCMSLDAQVKELGMEIYP 178
MNSLDGCVVQY E CKRLQTN++QA+DLPFEFRALELAL+LTCMSLDAQVKELG+E+YP
Sbjct: 121 MNSLDGCVVQYMSEFCKRLQTNREQAEDLPFEFRALELALDLTCMSLDAQVKELGLEVYP 180
Query: 179 VLDELASSISTLNLEHLRRLKGHLLALTQQVQKVHDEIEHLMDDDGDMAAMYLTEKKQRL 238
VLDELA+SI+T NLE +RRLKGHLLALTQ+VQ+VHDEIEHLMDDDGDMA MYLTEK+QR
Sbjct: 181 VLDELATSINTHNLERVRRLKGHLLALTQRVQRVHDEIEHLMDDDGDMAEMYLTEKRQRS 240
Query: 239 DSSS--DGYTQTNISSLDRVVSKSAPVSPVGSISGAQKLQRAFSSIVTSKHGSLISSSSN 296
++ + D Y Q +I S RVVSKSAPVSPV S+SGAQKLQRAFS+I SKHGSL+SSSSN
Sbjct: 241 EAYALGDMYFQNDIPSEGRVVSKSAPVSPVRSLSGAQKLQRAFSNISPSKHGSLMSSSSN 300
Query: 297 RENVEQLEMLLEAYFVVVDNTLSKLLSVR 325
EN++QLEMLLEAYF +DNTLSKL S++
Sbjct: 301 GENIDQLEMLLEAYFAAIDNTLSKLFSLK 329
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224108880|ref|XP_002315002.1| magnesium transporter [Populus trichocarpa] gi|222864042|gb|EEF01173.1| magnesium transporter [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
| >gi|255542018|ref|XP_002512073.1| RNA splicing protein mrs2, mitochondrial, putative [Ricinus communis] gi|223549253|gb|EEF50742.1| RNA splicing protein mrs2, mitochondrial, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
| >gi|225423464|ref|XP_002274070.1| PREDICTED: magnesium transporter MRS2-5 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|356499897|ref|XP_003518772.1| PREDICTED: magnesium transporter MRS2-5-like [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|297738091|emb|CBI27292.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|449452845|ref|XP_004144169.1| PREDICTED: magnesium transporter MRS2-5-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
| >gi|449523311|ref|XP_004168667.1| PREDICTED: magnesium transporter MRS2-5-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
| >gi|357487747|ref|XP_003614161.1| Magnesium transporter [Medicago truncatula] gi|355515496|gb|AES97119.1| Magnesium transporter [Medicago truncatula] | Back alignment and taxonomy information |
|---|
| >gi|15227679|ref|NP_178460.1| magnesium transporter MRS2-5 [Arabidopsis thaliana] gi|186499098|ref|NP_001118259.1| magnesium transporter MRS2-5 [Arabidopsis thaliana] gi|75274822|sp|Q9ZPR4.1|MRS25_ARATH RecName: Full=Magnesium transporter MRS2-5; AltName: Full=Magnesium Transporter 3; Short=AtMGT3 gi|20336657|gb|AAM19344.1|AF499434_1 hypothetical protein [Arabidopsis thaliana] gi|4406759|gb|AAD20070.1| hypothetical protein [Arabidopsis thaliana] gi|17979301|gb|AAL49876.1| unknown protein [Arabidopsis thaliana] gi|20465991|gb|AAM20217.1| unknown protein [Arabidopsis thaliana] gi|330250631|gb|AEC05725.1| magnesium transporter MRS2-5 [Arabidopsis thaliana] gi|330250632|gb|AEC05726.1| magnesium transporter MRS2-5 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 326 | ||||||
| TAIR|locus:2044254 | 421 | MGT3 "magnesium transporter 3" | 0.993 | 0.769 | 0.623 | 7.6e-96 | |
| TAIR|locus:2025767 | 443 | MGT1 "magnesium transporter 1" | 0.668 | 0.492 | 0.484 | 1.6e-45 | |
| TAIR|locus:2091176 | 484 | MGT4 "magnesium transporter 4" | 0.368 | 0.247 | 0.459 | 2.7e-45 | |
| TAIR|locus:2200542 | 442 | MGT2 "magnesium transporter 2" | 0.662 | 0.488 | 0.482 | 1e-43 | |
| TAIR|locus:2174799 | 394 | MGT9 "magnesium transporter 9" | 0.549 | 0.454 | 0.333 | 3.1e-33 | |
| TAIR|locus:2144746 | 294 | AT5G09720 [Arabidopsis thalian | 0.745 | 0.826 | 0.355 | 1e-27 | |
| TAIR|locus:2077665 | 436 | MGT6 "magnesium transporter 6" | 0.503 | 0.376 | 0.383 | 1.5e-24 | |
| TAIR|locus:2139905 | 408 | MGT5 "AT4G28580" [Arabidopsis | 0.496 | 0.397 | 0.301 | 3e-22 | |
| UNIPROTKB|Q6C8H7 | 455 | LPE10 "Mitochondrial inner mem | 0.601 | 0.430 | 0.287 | 1.4e-13 | |
| UNIPROTKB|Q7SFQ9 | 547 | mrs2 "Mitochondrial inner memb | 0.846 | 0.504 | 0.254 | 2.3e-10 |
| TAIR|locus:2044254 MGT3 "magnesium transporter 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 953 (340.5 bits), Expect = 7.6e-96, P = 7.6e-96
Identities = 207/332 (62%), Positives = 242/332 (72%)
Query: 1 MGESRGPFLRAFIPGSTSSDDTGR-LNLDARGNRGSHSVGTKNRGHASRSWIKIDQDGNF 59
MGE PF + +P SS GR +N + + NRG G K RG +SRSW+KIDQDGN
Sbjct: 1 MGEQLDPFSASNLPDFISSQKIGRPVNFEGQTNRGHPFSGLKKRGQSSRSWVKIDQDGNS 60
Query: 60 EILELDKTTIMRHCSXXXXXXXXXXXXFIYPSTILGREKAIVVSLVQIRCIITADEVILM 119
+LELDK TIM+ CS FIYPS+ILGRE+AIVVSL +IRCIITA+EVILM
Sbjct: 61 AVLELDKATIMKRCSLPSRDLRLLDPLFIYPSSILGRERAIVVSLEKIRCIITAEEVILM 120
Query: 120 NSLDGCVVQYYLELCKRLQTNKDQ--ADDLPFEFRXXXXXXXXTCMSLDAQVKELGMEIY 177
N+ D VVQY ELCKRLQ+N + DDLPFEF+ +C+SLDAQV EL ME+Y
Sbjct: 121 NARDASVVQYQSELCKRLQSNHNLNVKDDLPFEFKALELVLELSCLSLDAQVNELEMEVY 180
Query: 178 PVLDELASSISTLNLEHLRRLKGHLLALTQQVQKVHDEIEHLMDDDGDMAAMYLTEKKQR 237
PVLDELA++ISTLNLEH+RRLKG LL LTQ+VQKV DEIEHLMDDD DMA MYLTEKK+R
Sbjct: 181 PVLDELATNISTLNLEHVRRLKGRLLTLTQKVQKVCDEIEHLMDDDDDMAEMYLTEKKER 240
Query: 238 LDSSSDGYTQTNISS---LDRVVSKSAPVSPVGSISGA-QKLQRAFSSIVTSKHGSLISS 293
++ + + NI +VSKSAPVSPVGS SG KLQRAFSSIV S H SL+SS
Sbjct: 241 AEAHASEELEDNIGEDFESSGIVSKSAPVSPVGSTSGNFGKLQRAFSSIVGS-HKSLLSS 299
Query: 294 SSNRENVEQLEMLLEAYFVVVDNTLSKLLSVR 325
SS EN++QLEMLLEAYFVVVDNTLSKL S++
Sbjct: 300 SSIGENIDQLEMLLEAYFVVVDNTLSKLSSLK 331
|
|
| TAIR|locus:2025767 MGT1 "magnesium transporter 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2091176 MGT4 "magnesium transporter 4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2200542 MGT2 "magnesium transporter 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2174799 MGT9 "magnesium transporter 9" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2144746 AT5G09720 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2077665 MGT6 "magnesium transporter 6" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2139905 MGT5 "AT4G28580" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q6C8H7 LPE10 "Mitochondrial inner membrane magnesium transporter LPE10" [Yarrowia lipolytica CLIB122 (taxid:284591)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q7SFQ9 mrs2 "Mitochondrial inner membrane magnesium transporter mrs2" [Neurospora crassa OR74A (taxid:367110)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| eugene3.00080897 | magnesium transporter (420 aa) | |||||||
(Populus trichocarpa) | ||||||||
| Sorry, there are no predicted associations at the current settings. |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 326 | |||
| cd12823 | 323 | cd12823, Mrs2_Mfm1p-like, Saccharomyces cerevisiae | 4e-68 |
| >gnl|CDD|213357 cd12823, Mrs2_Mfm1p-like, Saccharomyces cerevisiae inner mitochondrial membrane Mg2+ transporters Mfm1p and Mrs2p-like family | Back alignment and domain information |
|---|
Score = 215 bits (550), Expect = 4e-68
Identities = 113/286 (39%), Positives = 142/286 (49%), Gaps = 60/286 (20%)
Query: 50 WIKIDQDGNFEILELDKTTIMRHCSLPARDLRLLDPLFI-YPSTILGREKAIVVSLVQIR 108
W ID GN ++ELDK+ ++R L RDLRLLDP YP +IL RE AI+V+L IR
Sbjct: 1 WTVIDSTGNATVVELDKSELLRELGLQPRDLRLLDPTLTSYPPSILVRENAILVNLEHIR 60
Query: 109 CIITADEVILMNSLDG---CVVQYYLELCKRLQT------NKDQADDLPFEFRALELALE 159
IITADEV+L + V + EL +RL + D LPFEFRALE ALE
Sbjct: 61 AIITADEVLLFDPDGSSSALVSAFLEELQRRLASSNGSESESGGEDSLPFEFRALEAALE 120
Query: 160 LTCMSLDAQVKELGMEIYPVLDELASSISTLNLEHLRRLKGHLLALTQQVQKVHDEIEHL 219
C L+A++K L E P+LDEL IST NLE L LK L+ L +VQKV D +E L
Sbjct: 121 EVCSHLEAELKRLEPEALPLLDELTDKISTSNLERLLPLKRRLVELETRVQKVRDALEEL 180
Query: 220 MDDDGDMAAMYLTEKKQRLDSSSDGYTQTNISSLDRVVSKSAPVSPVGSISGAQKLQRAF 279
+DDD DMA MYLT+K
Sbjct: 181 LDDDEDMADMYLTDKAA------------------------------------------- 197
Query: 280 SSIVTSKHGSLISSSSNRENVEQLEMLLEAYFVVVDNTLSKLLSVR 325
+ SS ++ E++EMLLEAY VD L+KL +R
Sbjct: 198 -------GPERLESSRKEDDHEEVEMLLEAYLQQVDELLNKLEELR 236
|
A eukaryotic subfamily belonging to the Escherichia coli CorA-Salmonella typhimurium ZntB_like family (EcCorA_ZntB-like) family of the MIT superfamily of essential membrane proteins involved in transporting divalent cations (uptake or efflux) across membranes. This functionally diverse subfamily includes the inner mitochondrial membrane Mg2+ transporters Saccharomyces cerevisiae Mfm1p/Lpe10p, Mrs2p, and human MRS2/ MRS2L. It also includes a family of Arabidopsis thaliana proteins (AtMGTs) some of which are localized to distinct tissues, and not all of which can transport Mg2+. Structures of the intracellular domain of two EcCorA_ZntB-like family transporters: Vibrio parahaemolyticus and Salmonella typhimurium ZntB form funnel-shaped homopentamers, the tip of the funnel is formed from two C-terminal transmembrane (TM) helices from each monomer, and the large opening of the funnel from the N-terminal cytoplasmic domains. The GMN signature motif of the MIT superfamily occurs just after TM1, mutation within this motif is known to abolish Mg2+ transport through Salmonella typhimurium CorA, and Mrs2p. Natural variants such as GVN and GIN, as in some ZntB family proteins, may be associated with the transport of different divalent cations, such as zinc and cadmium. The functional diversity of MIT transporters may also be due to minor structural differences regulating gating, substrate selection, and transport. Length = 323 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 326 | |||
| KOG2662 | 414 | consensus Magnesium transporters: CorA family [Ino | 100.0 | |
| PF01544 | 292 | CorA: CorA-like Mg2+ transporter protein; InterPro | 95.47 | |
| TIGR00383 | 318 | corA magnesium Mg(2+) and cobalt Co(2+) transport | 90.7 | |
| PRK09546 | 324 | zntB zinc transporter; Reviewed | 81.05 |
| >KOG2662 consensus Magnesium transporters: CorA family [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-78 Score=590.04 Aligned_cols=295 Identities=50% Similarity=0.711 Sum_probs=260.3
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCC---CCCCcccCCCcceEEEEEcCCCCeEEEeechHhHHHhhCCCC
Q 020464 2 GESRGPFLRAFIPGSTSSDDTGRLNLDA-RGNRGS---HSVGTKNRGHASRSWIKIDQDGNFEILELDKTTIMRHCSLPA 77 (326)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~k~~~~~~~~~~~D~~G~~~~~e~~K~~l~~~~gL~~ 77 (326)
..++.|+.++++|-..++-|+|.+.... ..++|. +..+.+|++.++++|++||++|++++.+++|++||+++||+|
T Consensus 15 ~l~~~~~~~s~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sw~~~D~tGn~~~~e~dK~~i~~r~~L~a 94 (414)
T KOG2662|consen 15 ALRLTPFGRSSLPFLRSALKTGSPSNSSPPILGGGKIDSSSVSKKSGSGSRSWTRFDATGNSTVLEVDKYTIMKRVGLPA 94 (414)
T ss_pred ccccCCCCccccchhhhhccCCCCCCCCCCCCCcccccCcccccccCCcceEEEEEcCCCCeeeccccHHHHHHHcCCCh
Confidence 3567899999999999999999755444 335565 677888999999999999999999999999999999999999
Q ss_pred CcccCcCCCCCCCceeeecCCeEEeeccceeeEEeecceeeecCCCchhHHHHHHHHHHhccCC-----------CCCCC
Q 020464 78 RDLRLLDPLFIYPSTILGREKAIVVSLVQIRCIITADEVILMNSLDGCVVQYYLELCKRLQTNK-----------DQADD 146 (326)
Q Consensus 78 RDLR~lDp~~~~PssIl~R~~aIlVNLe~IRAIIt~D~VLlfd~~~~~v~~fl~~L~~rL~~~~-----------~~~~~ 146 (326)
||||++||+++||++|++|++|||+||+|||||||+|+|+|||+.++ |.++..+++++|...+ +..+.
T Consensus 95 RDLR~ldp~~~~~ssIl~RE~aIVlNLe~IKAIItaeeVll~d~~~~-v~~~~~el~~~l~~~~~~~~~q~s~~~~~~~~ 173 (414)
T KOG2662|consen 95 RDLRKLDPSLSYPSSILGRENAIVLNLEHIKAIITADEVLLLDSLDP-VIPYNEELQRRLPVELESRGNQLSSDGGSKDE 173 (414)
T ss_pred hhhhhccccccCccccccccceEEeehhhhheeeehhheeEeccccc-cchHHHHHHHHhcccccccccccCCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999 9999999999987652 12368
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCChhhHHHHHHHHhHHHHHHHHHHHHHHHHHHhhCChhHH
Q 020464 147 LPFEFRALELALELTCMSLDAQVKELGMEIYPVLDELASSISTLNLEHLRRLKGHLLALTQQVQKVHDEIEHLMDDDGDM 226 (326)
Q Consensus 147 LPFEfrALEa~L~~v~s~Le~e~~~le~~~~~~Ld~L~~~is~~~Le~Lr~lK~~L~~l~~rv~~Vrd~LeelLddDeDM 226 (326)
+||||||||+||+++|++|++++..||+.|+++||+|+++|++.||++||.+|++|++|.+|||+|||+|+|+||||+||
T Consensus 174 lPFEFrALE~aLe~~~s~L~~~~~~Le~~~~~~LdeLt~~is~~nL~~lr~~k~~Lt~l~~rvqkvRDeLe~LLddd~Dm 253 (414)
T KOG2662|consen 174 LPFEFRALEVALEAACSFLDSRLSELETEAYPLLDELTNKISTLNLERLRILKKRLTELTSRVQKVRDELEELLDDDDDM 253 (414)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcChHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccccccccCCCCCCCCcccccccccccccCCCCCCCCCCcchhhhhhhhhccccccCCCCccccCCCCcchHHHHHH
Q 020464 227 AAMYLTEKKQRLDSSSDGYTQTNISSLDRVVSKSAPVSPVGSISGAQKLQRAFSSIVTSKHGSLISSSSNRENVEQLEML 306 (326)
Q Consensus 227 a~MyLT~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~dvEElEmL 306 (326)
|+||||+|+.+.++ +.|+|.+|+..... .+.+++-.+.. ...++|+||||||
T Consensus 254 a~mYLT~K~~~~~~-----------------~~~~~~sp~~~~~~----------~r~~~~~~~s~-~~~~dd~eElEML 305 (414)
T KOG2662|consen 254 AEMYLTRKLAQASS-----------------PESAPTSPTIKAGI----------SRAKSNRASST-VRGEDDVEELEML 305 (414)
T ss_pred HHHHHhHHhhhccc-----------------cccCCCCccccCCc----------cchhhcccchh-ccccccHHHHHHH
Confidence 99999999987652 35778888766643 12111111111 2238999999999
Q ss_pred HHHHHHHHHHHHhhhhhcc
Q 020464 307 LEAYFVVVDNTLSKLLSVR 325 (326)
Q Consensus 307 LEaYf~qiD~~~nkl~~Lr 325 (326)
|||||||||+|+||+.+||
T Consensus 306 LEaYf~qiD~~~nk~~~Lr 324 (414)
T KOG2662|consen 306 LEAYFMQIDSTLNKLESLR 324 (414)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999987
|
|
| >PF01544 CorA: CorA-like Mg2+ transporter protein; InterPro: IPR002523 The CorA transport system is the primary Mg2+ influx system of Salmonella typhimurium and Escherichia coli [, ] | Back alignment and domain information |
|---|
| >TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA) | Back alignment and domain information |
|---|
| >PRK09546 zntB zinc transporter; Reviewed | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 326 | ||||
| 3rkg_A | 261 | Structural And Functional Characterization Of The Y | 1e-06 |
| >pdb|3RKG|A Chain A, Structural And Functional Characterization Of The Yeast Mg2+ Channel Mrs2 Length = 261 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 326 | |||
| 3rkg_A | 261 | Magnesium transporter MRS2, mitochondrial; matrix | 2e-48 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 1e-05 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 2e-05 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 6e-05 |
| >3rkg_A Magnesium transporter MRS2, mitochondrial; matrix located domain, hydrophobic GATE magnesium binding site, metal transport; 1.28A {Saccharomyces cerevisiae} Length = 261 | Back alignment and structure |
|---|
Score = 162 bits (410), Expect = 2e-48
Identities = 51/209 (24%), Positives = 90/209 (43%), Gaps = 5/209 (2%)
Query: 40 TKNRGHASRSWIKIDQDGNFEIL--ELDKTTIMRHCSLPARDLRLLD-PLFIYPSTILGR 96
S + GN + + K + + SL RDLR +D TI+ +
Sbjct: 9 ISASDSLFISCTVFNSKGNIISMSEKFPKWSFLTEHSLFPRDLRKIDNSSIDIIPTIMCK 68
Query: 97 EKAIVVSLVQIRCIITADEVILMNSLDGCVVQYYLELCKRLQTNKDQADD--LPFEFRAL 154
IV++L+ I+ +I D+V + ++ + L L++ + +E RAL
Sbjct: 69 PNCIVINLLHIKALIERDKVYVFDTTNPSAAAKLSVLMYDLESKLSSTKNNSQFYEHRAL 128
Query: 155 ELALELTCMSLDAQVKELGMEIYPVLDELASSISTLNLEHLRRLKGHLLALTQQVQKVHD 214
E +L+ K +L++L + ++ L L HL L Q+ + D
Sbjct: 129 ESIFINVMSALETDFKLHSQICIQILNDLENEVNRLKLRHLLIKSKDLTLFYQKTLLIRD 188
Query: 215 EIEHLMDDDGDMAAMYLTEKKQRLDSSSD 243
++ L+++D D+A MYLT KK D+ SD
Sbjct: 189 LLDELLENDDDLANMYLTVKKSPKDNFSD 217
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 326 | |||
| 3rkg_A | 261 | Magnesium transporter MRS2, mitochondrial; matrix | 100.0 | |
| 3nvo_A | 264 | Zinc transport protein ZNTB; alpha-beta-alpha sand | 94.05 | |
| 4ev6_A | 339 | Magnesium transport protein CORA; membrane protein | 91.35 | |
| 2iub_A | 363 | CORA, divalent cation transport-related protein; m | 89.37 | |
| 4egw_A | 280 | Magnesium transport protein CORA; magnesium transp | 88.84 | |
| 2bbh_A | 269 | Divalent cation transport-related protein; transpo | 86.17 | |
| 3ck6_A | 252 | Putative membrane transport protein; APC91421.1, Z | 85.72 | |
| 3swf_A | 74 | CGMP-gated cation channel alpha-1; coiled-coil, as | 82.25 |
| >3rkg_A Magnesium transporter MRS2, mitochondrial; matrix located domain, hydrophobic GATE magnesium binding site, metal transport; 1.28A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-66 Score=484.06 Aligned_cols=222 Identities=26% Similarity=0.385 Sum_probs=205.2
Q ss_pred CCCc-ceEEEEEcCCCCeEEEe--echHhHHHhhCCCCCcccCcCCCC-CCCceeeecCCeEEeeccceeeEEeecceee
Q 020464 43 RGHA-SRSWIKIDQDGNFEILE--LDKTTIMRHCSLPARDLRLLDPLF-IYPSTILGREKAIVVSLVQIRCIITADEVIL 118 (326)
Q Consensus 43 ~~~~-~~~~~~~D~~G~~~~~e--~~K~~l~~~~gL~~RDLR~lDp~~-~~PssIl~R~~aIlVNLe~IRAIIt~D~VLl 118 (326)
+... .-+|++||++|+++.++ ++|++||+++||+|||||+|||.+ +.+|+|++|++||||||+|||||||+|+|+|
T Consensus 11 ~~~~~~~~ct~fD~~G~~~~~~~~~~K~~l~~~~~L~~RDLR~ld~~~~~~~PsIl~R~~aIlvnL~~irAII~~d~Vll 90 (261)
T 3rkg_A 11 ASDSLFISCTVFNSKGNIISMSEKFPKWSFLTEHSLFPRDLRKIDNSSIDIIPTIMCKPNCIVINLLHIKALIERDKVYV 90 (261)
T ss_dssp CGGGGEEEEEEECTTSCEEEEEEEEEHHHHHHHTTCCGGGGGGTSSCCSSCCCEEEECSSCEEEEETTEEEEECSSCEEE
T ss_pred CCCCceEEEEEECCCCCEEEecccccHHHHHHHcCCChhhHHHhcccccCCCceEEecCCeEEEechhceEEEEcceEEE
Confidence 3334 78999999999999986 999999999999999999999985 3445799999999999999999999999999
Q ss_pred ecCCCchhH----HHHHHHHHHhccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCChhhHHH
Q 020464 119 MNSLDGCVV----QYYLELCKRLQTNKDQADDLPFEFRALELALELTCMSLDAQVKELGMEIYPVLDELASSISTLNLEH 194 (326)
Q Consensus 119 fd~~~~~v~----~fl~~L~~rL~~~~~~~~~LPFEfrALEa~L~~v~s~Le~e~~~le~~~~~~Ld~L~~~is~~~Le~ 194 (326)
||+.++.+. .|+++|+.||..+ ..+++|||||||||||++||+.|+++++.+++.++++|++|+++|++.+|++
T Consensus 91 fd~~~~~~~~~~~~f~~~l~~~l~~~--~~~~lPFEfraLEa~L~~v~~~Le~e~~~l~~~~~~~L~~L~~~i~~~~L~~ 168 (261)
T 3rkg_A 91 FDTTNPSAAAKLSVLMYDLESKLSST--KNNSQFYEHRALESIFINVMSALETDFKLHSQICIQILNDLENEVNRLKLRH 168 (261)
T ss_dssp ECCSCHHHHHHHHHHHHHHHHHHHCS--SCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCHHHHHH
T ss_pred EcCCCchhhhhHHHHHHHHHHHhccC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 999998765 5999999999875 3568999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHhhCChhHHhhcccccccccCCCCCCCCcccccccccccccCCCCCCCCCCcchhhh
Q 020464 195 LRRLKGHLLALTQQVQKVHDEIEHLMDDDGDMAAMYLTEKKQRLDSSSDGYTQTNISSLDRVVSKSAPVSPVGSISGAQK 274 (326)
Q Consensus 195 Lr~lK~~L~~l~~rv~~Vrd~LeelLddDeDMa~MyLT~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 274 (326)
|+..|++|++|.+||++||++|+++||||+||++||||+|+.
T Consensus 169 Ll~~~k~L~~~~~kv~~vr~~leelLddDeDm~~myLT~k~~-------------------------------------- 210 (261)
T 3rkg_A 169 LLIKSKDLTLFYQKTLLIRDLLDELLENDDDLANMYLTVKKS-------------------------------------- 210 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHTCCSSCCC--------------------------------------
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHcCHHHHHHhhccCCCC--------------------------------------
Confidence 999999999999999999999999999999999999999842
Q ss_pred hhhhhccccccCCCCccccCCCCcchHHHHHHHHHHHHHHHHHHhhhhhcc
Q 020464 275 LQRAFSSIVTSKHGSLISSSSNRENVEQLEMLLEAYFVVVDNTLSKLLSVR 325 (326)
Q Consensus 275 ~~~~~~~~~~s~~~~~~~~~~~~~dvEElEmLLEaYf~qiD~~~nkl~~Lr 325 (326)
..+++||+|||||+||+|||+++|++.+|+
T Consensus 211 ---------------------~~~d~eElEmLLE~Y~~q~d~~~~~~~~L~ 240 (261)
T 3rkg_A 211 ---------------------PKDNFSDLEMLIETYYTQCDEYVQQSESLI 240 (261)
T ss_dssp ---------------------TTSCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---------------------CccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 134889999999999999999999999875
|
| >3nvo_A Zinc transport protein ZNTB; alpha-beta-alpha sandwich, zinc efflux system, membrane, TRA protein; 2.30A {Salmonella enterica} PDB: 3nwi_A | Back alignment and structure |
|---|
| >4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
| >2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A | Back alignment and structure |
|---|
| >4egw_A Magnesium transport protein CORA; magnesium transporter, magnesium binding, metal transp; 2.50A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
| >2bbh_A Divalent cation transport-related protein; transporter, Mg, membrane, structural genomics, structural G consortium, SGC; HET: DMU; 1.85A {Thermotoga maritima} SCOP: d.328.1.1 | Back alignment and structure |
|---|
| >3ck6_A Putative membrane transport protein; APC91421.1, ZNTB, cytoplasmic domain, PSI-2, protein structure initiative; HET: MSE; 1.90A {Vibrio parahaemolyticus rimd 2210633} PDB: 3bhc_A* | Back alignment and structure |
|---|
| >3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus} | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 326 | |||
| d2bbha1 | 232 | Magnesium transport protein CorA, soluble domain { | 92.88 |
| >d2bbha1 d.328.1.1 (A:13-244) Magnesium transport protein CorA, soluble domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CorA soluble domain-like superfamily: CorA soluble domain-like family: CorA soluble domain-like domain: Magnesium transport protein CorA, soluble domain species: Thermotoga maritima [TaxId: 2336]
Probab=92.88 E-value=0.28 Score=41.15 Aligned_cols=165 Identities=14% Similarity=0.159 Sum_probs=95.5
Q ss_pred ceEEEEEcCCCCeEEEeechHhHHHhhCCCCCcccC-cCCCCCCCceeeecCCeEEe--------------eccceeeEE
Q 020464 47 SRSWIKIDQDGNFEILELDKTTIMRHCSLPARDLRL-LDPLFIYPSTILGREKAIVV--------------SLVQIRCII 111 (326)
Q Consensus 47 ~~~~~~~D~~G~~~~~e~~K~~l~~~~gL~~RDLR~-lDp~~~~PssIl~R~~aIlV--------------NLe~IRAII 111 (326)
...|+-++.-++... =..|.+.+||++--+-- +++. .. |.+-.-++++.+ ...++..++
T Consensus 46 ~~~Widi~~~~~~e~----l~~l~~~f~i~~l~led~l~~~-~r-pk~e~~~~~~fiil~~~~~~~~~~~~~~~~l~i~l 119 (232)
T d2bbha1 46 TPTWINITGIHRTDV----VQRVGEFFGTHPLVLEDILNVH-QR-PKVEFFENYVFIVLKMFTYDKNLHELESEQVSLIL 119 (232)
T ss_dssp SCEEEEEECTTCHHH----HHHHHHHHTCCHHHHHHHHCTT-CC-CEEEECSSEEEEEEEEEECCC--CCCEEEEEEEEE
T ss_pred CcEEEEeCCCCCHHH----HHHHHHHcCcCHhHHHHHhCcc-cC-CceEEeCCEEEEEEEeecccCCCCcceeEEEEEEE
Confidence 357877764333221 13477788998866653 2222 11 233333333332 334667777
Q ss_pred eecceeeecCCCchhHHHHHHHHHHhccCCCCCC-CCchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhc----
Q 020464 112 TADEVILMNSLDGCVVQYYLELCKRLQTNKDQAD-DLPFEFRALELALELTCMSLDAQVKELGMEIYPVLDELASS---- 186 (326)
Q Consensus 112 t~D~VLlfd~~~~~v~~fl~~L~~rL~~~~~~~~-~LPFEfrALEa~L~~v~s~Le~e~~~le~~~~~~Ld~L~~~---- 186 (326)
+.+.|+-|..... .++..+..++..+.+... .-|- ..+-++|..++..+..-+..++.. +++|++.
T Consensus 120 ~~~~lITv~~~~~---~~~~~v~~~~~~~~~~~~~~~~~--~ll~~lld~ivd~y~~~l~~l~~~----id~lE~~v~~~ 190 (232)
T d2bbha1 120 TKNCVLMFQEKIG---DVFDPVRERIRYNRGIIRKKRAD--YLLYSLIDALVDDYFVLLEKIDDE----IDVLEEEVLER 190 (232)
T ss_dssp ETTEEEEEESSSC---CSCHHHHHHHHTTCTTGGGSCHH--HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHCC---
T ss_pred ECCEEEEEecCCC---chHHHHHHHHHhCccccccCCHH--HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhhC
Confidence 7777776653221 333445555543211110 1121 245566666666666666666666 4445544
Q ss_pred CChhhHHHHHHHHhHHHHHHHHHHHHHHHHHHhhCChhHH
Q 020464 187 ISTLNLEHLRRLKGHLLALTQQVQKVHDEIEHLMDDDGDM 226 (326)
Q Consensus 187 is~~~Le~Lr~lK~~L~~l~~rv~~Vrd~LeelLddDeDM 226 (326)
-+...++++-.+|+.+..+..-+.-.|++|..|+.+|.++
T Consensus 191 ~~~~~l~~i~~lrr~l~~lrr~l~p~revl~~L~r~~~~l 230 (232)
T d2bbha1 191 PEKETVQRTHQLKRNLVELRKTIWPLREVLSSLYRDVPPL 230 (232)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 3445689999999999999999999999999999887664
|