Citrus Sinensis ID: 020470

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320------
Protein Sequence
MAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFNQVLGVIGGVIFWPLTIYFPVEMYFKQMNIEAWTRKWVMLRVFSYVCFIVSTFGLVGSIQGIISAKLS
Secondary Structure (PSIPRED)
ccEEEccccccccccccccccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHEEEEEEEEEEEEcccccccccccccccccHHHHHHHHHHHHHHHHHccccccHHHHHHHccccccccccccEEEEEEEEEHHHHHHHHccEEcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccHcccccccccccccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEccEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEcHHHHHHEHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
maiqksncyhregheaaceysDTYYMLIFGAVQLILsqapdfhniQSLSVIAAVMSFAYSFIGFGLGVAKVIGngfvmgsfsgvstTTSIEKMWLVAQALGDIAFAYPYSLILIEIQdtlkspppanqtmkkastmSIITTTIFYLFCggfgyaafgdntpgnlltgfgfyepywlidLANAFIVIHLVGgyqvysqpiFAHFEKWIcekfpengflnnefflkpplmpafrwnplrlcfRTVYVVSVTAIAMSFPYFNQVLGVIggvifwpltiyfpVEMYFKQMNIEAWTRKWVMLRVFSYVCFIVSTFGLVGSIQGIISAKLS
Flexible Loop (DISEMBL)
maiqksncyhregHEAACEYSDTYYMLIFGAVQLILSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFNQVLGVIGGVIFWPLTIYFPVEMYFKQMNIEAWTRKWVMLRVFSYVCFIVSTFGLVGSIQGIISAKLS
Low Complexity Region (SEG)
MAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFNQVLGVIGGVIFWPLTIYFPVEMYFKQMNIEAWTRKWVMLRVFSYVCFIVSTFGLVGSIQGIISAKLS
Disordered region (IsUnstruct)
*******CYHREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDT****************MSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFNQVLGVIGGVIFWPLTIYFPVEMYFKQMNIEAWTRKWVMLRVFSYVCFIVSTFGLVGSIQGII*****
Disordered Region (DISOPRED)
MAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFNQVLGVIGGVIFWPLTIYFPVEMYFKQMNIEAWTRKWVMLRVFSYVCFIVSTFGLVGSIQGIISAKL*
Disordered Region (DISEMBL)
MAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFNQVLGVIGGVIFWPLTIYFPVEMYFKQMNIEAWTRKWVMLRVFSYVCFIVSTFGLVGSIQGIISAKLS
Disordered Region (DISPRO)
****KSNC**REGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFNQVLGVIGGVIFWPLTIYFPVEMYFKQMNIEAWTRKWVMLRVFSYVCFIVSTFGLVGSIQGIISA*L*
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFNQVLGVIGGVIFWPLTIYFPVEMYFKQMNIEAWTRKWVMLRVFSYVCFIVSTFGLVGSIQGIISAKLS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	326	2.2.26 [Sep-21-2011]
Q38967	493	Amino acid permease 2 OS=	yes	no	0.984	0.651	0.527	1e-104
Q9FF99	467	Probable amino acid perme	no	no	0.990	0.691	0.577	1e-103
O80592	475	Amino acid permease 8 OS=	no	no	0.987	0.677	0.525	8e-98
Q39134	476	Amino acid permease 3 OS=	no	no	0.944	0.647	0.538	1e-96
Q9FN04	466	Amino acid permease 4 OS=	no	no	0.984	0.688	0.506	5e-96
Q42400	485	Amino acid permease 1 OS=	no	no	0.990	0.665	0.5	9e-96
Q8GUM3	480	Amino acid permease 5 OS=	no	no	0.981	0.666	0.518	5e-93
P92934	481	Amino acid permease 6 OS=	no	no	0.990	0.671	0.503	8e-91
Q9FKS8	446	Lysine histidine transpor	no	no	0.883	0.645	0.299	1e-29
Q9C733	453	Lysine histidine transpor	no	no	0.880	0.633	0.301	6e-28

>sp|Q38967|AAP2_ARATH Amino acid permease 2 OS=Arabidopsis thaliana GN=AAP2 PE=1 SV=1

 Score =  377 bits (969), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 171/324 (52%), Positives = 235/324 (72%), Gaps = 3/324 (0%)

Query: 1   MAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNIQSLSVIAAVMSFAYS 60
           MAI++SNC+H+ G +  C  S   YM++FG  +++LSQ PDF  I  +S++AAVMSF YS
Sbjct: 157 MAIKRSNCFHKSGGKDPCHMSSNPYMIVFGVAEILLSQVPDFDQIWWISIVAAVMSFTYS 216

Query: 61  FIGFGLGVAKVIGNGFVMGSFSGVS--TTTSIEKMWLVAQALGDIAFAYPYSLILIEIQD 118
            IG  LG+ +V  NG   GS +G+S  T T  +K+W   QALGDIAFAY YS++LIEIQD
Sbjct: 217 AIGLALGIVQVAANGVFKGSLTGISIGTVTQTQKIWRTFQALGDIAFAYSYSVVLIEIQD 276

Query: 119 TLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLID 178
           T++SPP  ++TMKKA+ +SI  TTIFY+ CG  GYAAFGD  PGNLLTGFGFY P+WL+D
Sbjct: 277 TVRSPPAESKTMKKATKISIAVTTIFYMLCGSMGYAAFGDAAPGNLLTGFGFYNPFWLLD 336

Query: 179 LANAFIVIHLVGGYQVYSQPIFAHFEKWICEKFPENGFLNNEFFLK-PPLMPAFRWNPLR 237
           +ANA IV+HLVG YQV++QPIFA  EK + E++P+N FL+ EF ++ P     ++ N  R
Sbjct: 337 IANAAIVVHLVGAYQVFAQPIFAFIEKSVAERYPDNDFLSKEFEIRIPGFKSPYKVNVFR 396

Query: 238 LCFRTVYVVSVTAIAMSFPYFNQVLGVIGGVIFWPLTIYFPVEMYFKQMNIEAWTRKWVM 297
           + +R+ +VV+ T I+M  P+FN V+G++G + FWPLT+YFPVEMY KQ  +E W+ +WV 
Sbjct: 397 MVYRSGFVVTTTVISMLMPFFNDVVGILGALGFWPLTVYFPVEMYIKQRKVEKWSTRWVC 456

Query: 298 LRVFSYVCFIVSTFGLVGSIQGII 321
           L++ S  C ++S    VGSI G++
Sbjct: 457 LQMLSVACLVISVVAGVGSIAGVM 480

Amino acid-proton symporter. Stereospecific transporter with a broad specificity for histidine, arginine, glutamate and neutral amino acids, favoring small amino acids such as alanine, asparagine and glutamine. Accepts also large aromatic residues such as in phenlalanine or tyrosine. Has a much higher affinity for basic amino acids as compared with AAP1. May function in xylem-to-phloem transfer and in uptake of amino acids assimilated in the green silique tissue.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9FF99|AAP7_ARATH Probable amino acid permease 7 OS=Arabidopsis thaliana GN=AAP7 PE=1 SV=1

 Score =  375 bits (964), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 189/327 (57%), Positives = 243/327 (74%), Gaps = 4/327 (1%)

Query: 2   AIQKSNCYHREGHEAACEYSDT--YYMLIFGAVQLILSQAPDFHNIQSLSVIAAVMSFAY 59
           AI KSNCYHR GH A C Y D   Y+M++FG  Q+ +SQ P+FHN+  LS++AA+MSF Y
Sbjct: 139 AIMKSNCYHRNGHNATCSYGDNNNYFMVLFGLTQIFMSQIPNFHNMVWLSLVAAIMSFTY 198

Query: 60  SFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDT 119
           SFIG GL + K+I N  + GS  G+      EK+W+V QALG+IAF+YP+S+IL+EIQDT
Sbjct: 199 SFIGIGLALGKIIENRKIEGSIRGIPAENRGEKVWIVFQALGNIAFSYPFSIILLEIQDT 258

Query: 120 LKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDL 179
           L+SPP   QTMKKAST+++   T F+  CG FGYAAFGD+TPGNLLTGFGFYEP+WL+D 
Sbjct: 259 LRSPPAEKQTMKKASTVAVFIQTFFFFCCGCFGYAAFGDSTPGNLLTGFGFYEPFWLVDF 318

Query: 180 ANAFIVIHLVGGYQVYSQPIFAHFEKWICEKFPENGFLNNEFFLKPPLM--PAFRWNPLR 237
           ANA IV+HLVGGYQVYSQPIFA  E+ + +K+PEN F+   +  K PL+     R NP+R
Sbjct: 319 ANACIVLHLVGGYQVYSQPIFAAAERSLTKKYPENKFIARFYGFKLPLLRGETVRLNPMR 378

Query: 238 LCFRTVYVVSVTAIAMSFPYFNQVLGVIGGVIFWPLTIYFPVEMYFKQMNIEAWTRKWVM 297
           +C RT+YV+  T +A+ FPYFN+VLGV+G + FWPL +YFPVEM   Q  I +WTR W++
Sbjct: 379 MCLRTMYVLITTGVAVMFPYFNEVLGVVGALAFWPLAVYFPVEMCILQKKIRSWTRPWLL 438

Query: 298 LRVFSYVCFIVSTFGLVGSIQGIISAK 324
           LR FS+VC +V    LVGSI G++ AK
Sbjct: 439 LRGFSFVCLLVCLLSLVGSIYGLVGAK 465

Amino acid-proton symporter. Stereospecific transporter with a broad specificity for neutral amino acids.

Arabidopsis thaliana (taxid: 3702)

>sp|O80592|AAP8_ARATH Amino acid permease 8 OS=Arabidopsis thaliana GN=AAP8 PE=1 SV=1

 Score =  357 bits (915), Expect = 8e-98,   Method: Compositional matrix adjust.
 Identities = 172/327 (52%), Positives = 229/327 (70%), Gaps = 5/327 (1%)

Query: 1   MAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNIQSLSVIAAVMSFAYS 60
           +AI KSNCYH +GH+A C  S+  YM  FG VQ+ILSQ P+FH +  LS+IAAVMSF+Y+
Sbjct: 139 VAIGKSNCYHDKGHKAKCSVSNYPYMAAFGIVQIILSQLPNFHKLSFLSIIAAVMSFSYA 198

Query: 61  FIGFGLGVAKV----IGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEI 116
            IG GL +A V    IG   + G+  GV  T S EK+W + QA+GDIAF+Y ++ ILIEI
Sbjct: 199 SIGIGLAIATVASGKIGKTELTGTVIGVDVTAS-EKVWKLFQAIGDIAFSYAFTTILIEI 257

Query: 117 QDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWL 176
           QDTL+S PP N+ MK+AS + + TTT+FY+ CG  GYAAFG+  PG+ LT FGFYEPYWL
Sbjct: 258 QDTLRSSPPENKVMKRASLVGVSTTTVFYILCGCIGYAAFGNQAPGDFLTDFGFYEPYWL 317

Query: 177 IDLANAFIVIHLVGGYQVYSQPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPL 236
           ID ANA I +HL+G YQVY+QP F   E+   +K+P++ F+N E+  K PL+   R N  
Sbjct: 318 IDFANACIALHLIGAYQVYAQPFFQFVEENCNKKWPQSNFINKEYSSKVPLLGKCRVNLF 377

Query: 237 RLCFRTVYVVSVTAIAMSFPYFNQVLGVIGGVIFWPLTIYFPVEMYFKQMNIEAWTRKWV 296
           RL +RT YVV  T +AM FP+FN +LG++G   FWPLT+YFPV M+  Q  ++ ++R+W+
Sbjct: 378 RLVWRTCYVVLTTFVAMIFPFFNAILGLLGAFAFWPLTVYFPVAMHIAQAKVKKYSRRWL 437

Query: 297 MLRVFSYVCFIVSTFGLVGSIQGIISA 323
            L +   VC IVS    VGSI G+I++
Sbjct: 438 ALNLLVLVCLIVSALAAVGSIIGLINS 464

Amino acid-proton symporter. Stereospecific transporter with a broad specificity for glutamate, aspartate and neutral and acidic amino acids.

Arabidopsis thaliana (taxid: 3702)

>sp|Q39134|AAP3_ARATH Amino acid permease 3 OS=Arabidopsis thaliana GN=AAP3 PE=1 SV=2

 Score =  353 bits (905), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 167/310 (53%), Positives = 219/310 (70%), Gaps = 2/310 (0%)

Query: 1   MAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNIQSLSVIAAVMSFAYS 60
           MAI++SNC+H+ G +  C  +   YM+ FG VQ++ SQ PDF  +  LS++AAVMSF YS
Sbjct: 141 MAIKRSNCFHKSGGKDPCHMNSNPYMIAFGLVQILFSQIPDFDQLWWLSILAAVMSFTYS 200

Query: 61  FIGFGLGVAKVIGNGFVMGSFSGVS--TTTSIEKMWLVAQALGDIAFAYPYSLILIEIQD 118
             G  LG+A+V+ NG V GS +G+S    T  +K+W   QALGDIAFAY YS+ILIEIQD
Sbjct: 201 SAGLALGIAQVVVNGKVKGSLTGISIGAVTETQKIWRTFQALGDIAFAYSYSIILIEIQD 260

Query: 119 TLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLID 178
           T+KSPP   +TMKKA+ +S+  TT+FY+ CG  GYAAFGD +PGNLLTGFGFY PYWL+D
Sbjct: 261 TVKSPPSEEKTMKKATLVSVSVTTMFYMLCGCMGYAAFGDLSPGNLLTGFGFYNPYWLLD 320

Query: 179 LANAFIVIHLVGGYQVYSQPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRL 238
           +ANA IVIHL+G YQVY QP+FA  EK    +FP++ F+  +  +  P     R N  RL
Sbjct: 321 IANAAIVIHLIGAYQVYCQPLFAFIEKQASIQFPDSEFIAKDIKIPIPGFKPLRLNVFRL 380

Query: 239 CFRTVYVVSVTAIAMSFPYFNQVLGVIGGVIFWPLTIYFPVEMYFKQMNIEAWTRKWVML 298
            +RTV+V+  T I+M  P+FN V+G++G + FWPLT+YFPVEMY  Q  I  W+ +WV L
Sbjct: 381 IWRTVFVIITTVISMLLPFFNDVVGLLGALGFWPLTVYFPVEMYIAQKKIPRWSTRWVCL 440

Query: 299 RVFSYVCFIV 308
           +VFS  C +V
Sbjct: 441 QVFSLGCLVV 450

Amino acid-proton symporter. Stereospecific transporter with a broad specificity for GABA, tryptophan and both neutral and basic amino acids. High affinity transport of cationic amino acids.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FN04|AAP4_ARATH Amino acid permease 4 OS=Arabidopsis thaliana GN=AAP4 PE=1 SV=1

 Score =  351 bits (900), Expect = 5e-96,   Method: Compositional matrix adjust.
 Identities = 164/324 (50%), Positives = 225/324 (69%), Gaps = 3/324 (0%)

Query: 1   MAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNIQSLSVIAAVMSFAYS 60
           MAI++SNC+H  G +  C  S   YM++FG  +++LSQ  DF  I  LS++AA+MSF YS
Sbjct: 130 MAIKRSNCFHESGGKNPCHMSSNPYMIMFGVTEILLSQIKDFDQIWWLSIVAAIMSFTYS 189

Query: 61  FIGFGLGVAKVIGNGFVMGSFSGVS--TTTSIEKMWLVAQALGDIAFAYPYSLILIEIQD 118
            IG  LG+ +V  NG V GS +G+S    T  +K+W   QALGDIAFAY YS++LIEIQD
Sbjct: 190 AIGLALGIIQVAANGVVKGSLTGISIGAVTQTQKIWRTFQALGDIAFAYSYSVVLIEIQD 249

Query: 119 TLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLID 178
           T++SPP  ++TMK A+ +SI  TT FY+ CG  GYAAFGD  PGNLLTGFGFY P+WL+D
Sbjct: 250 TVRSPPAESKTMKIATRISIAVTTTFYMLCGCMGYAAFGDKAPGNLLTGFGFYNPFWLLD 309

Query: 179 LANAFIVIHLVGGYQVYSQPIFAHFEKWICEKFPENGFLNNEFFLK-PPLMPAFRWNPLR 237
           +ANA IVIHLVG YQV++QPIFA  EK    +FP++  +  E+ ++ P     ++ N  R
Sbjct: 310 VANAAIVIHLVGAYQVFAQPIFAFIEKQAAARFPDSDLVTKEYEIRIPGFRSPYKVNVFR 369

Query: 238 LCFRTVYVVSVTAIAMSFPYFNQVLGVIGGVIFWPLTIYFPVEMYFKQMNIEAWTRKWVM 297
             +R+ +VV  T I+M  P+FN V+G++G + FWPLT+YFPVEMY +Q  +E W+ KWV 
Sbjct: 370 AVYRSGFVVLTTVISMLMPFFNDVVGILGALGFWPLTVYFPVEMYIRQRKVERWSMKWVC 429

Query: 298 LRVFSYVCFIVSTFGLVGSIQGII 321
           L++ S  C +++    VGSI G++
Sbjct: 430 LQMLSCGCLMITLVAGVGSIAGVM 453

Amino acid-proton symporter. Stereospecific transporter with a broad specificity for neutral amino acids, favoring small amino acids such as alanine, asparagine and glutamine. Accepts also large aromatic residues such as in phenlalanine or tyrosine.

Arabidopsis thaliana (taxid: 3702)

>sp|Q42400|AAP1_ARATH Amino acid permease 1 OS=Arabidopsis thaliana GN=AAP1 PE=1 SV=1

 Score =  350 bits (897), Expect = 9e-96,   Method: Compositional matrix adjust.
 Identities = 163/326 (50%), Positives = 222/326 (68%), Gaps = 3/326 (0%)

Query: 1   MAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNIQSLSVIAAVMSFAYS 60
           +A+ KSNC+H +GH A C  S+  YM +FG +Q+ILSQ P+FH +  LS++AAVMSF Y+
Sbjct: 148 VAVGKSNCFHDKGHTADCTISNYPYMAVFGIIQVILSQIPNFHKLSFLSIMAAVMSFTYA 207

Query: 61  FIGFGLGVAKVIGNGFVMGSFSGVST---TTSIEKMWLVAQALGDIAFAYPYSLILIEIQ 117
            IG GL +A V G      S +G +     T+ +K+W   QA+GDIAFAY Y+ +LIEIQ
Sbjct: 208 TIGIGLAIATVAGGKVGKTSMTGTAVGVDVTAAQKIWRSFQAVGDIAFAYAYATVLIEIQ 267

Query: 118 DTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLI 177
           DTL+S P  N+ MK+AS + + TTT FY+ CG  GYAAFG+N PG+ LT FGF+EP+WLI
Sbjct: 268 DTLRSSPAENKAMKRASLVGVSTTTFFYILCGCIGYAAFGNNAPGDFLTDFGFFEPFWLI 327

Query: 178 DLANAFIVIHLVGGYQVYSQPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLR 237
           D ANA I +HL+G YQV++QPIF   EK     +P+N F+ +E+ +  P +  F  +  R
Sbjct: 328 DFANACIAVHLIGAYQVFAQPIFQFVEKKCNRNYPDNKFITSEYSVNVPFLGKFNISLFR 387

Query: 238 LCFRTVYVVSVTAIAMSFPYFNQVLGVIGGVIFWPLTIYFPVEMYFKQMNIEAWTRKWVM 297
           L +RT YVV  T +AM FP+FN +LG+IG   FWPLT+YFPVEM+  Q  I+ ++ +W+ 
Sbjct: 388 LVWRTAYVVITTVVAMIFPFFNAILGLIGAASFWPLTVYFPVEMHIAQTKIKKYSARWIA 447

Query: 298 LRVFSYVCFIVSTFGLVGSIQGIISA 323
           L+   YVC IVS     GSI G+IS+
Sbjct: 448 LKTMCYVCLIVSLLAAAGSIAGLISS 473

Amino acid-proton symporter. Stereospecific transporter with a broad specificity for histidine, glutamate and neutral amino acids. Reduced affinities for asparagine and valine. Involved in amino acid uptake from the apoplastic cavity into the embryo cells for storage protein accumulation and in root amino acid uptake.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8GUM3|AAP5_ARATH Amino acid permease 5 OS=Arabidopsis thaliana GN=AAP5 PE=1 SV=1

 Score =  341 bits (874), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 172/332 (51%), Positives = 221/332 (66%), Gaps = 12/332 (3%)

Query: 1   MAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNIQSLSVIAAVMSFAYS 60
           +AIQ+++C    G    C  +   YM+ FG VQ+I SQ PDF  +  LS++AAVMSFAYS
Sbjct: 139 VAIQRTSCQQMNGPNDPCHVNGNVYMIAFGIVQIIFSQIPDFDQLWWLSIVAAVMSFAYS 198

Query: 61  FIGFGLGVAKVIGNGFVMGSFSGVS--------TTTSIEKMWLVAQALGDIAFAYPYSLI 112
            IG GLGV+KV+ N  + GS +GV+        T TS +K+W   Q+LG+IAFAY YS+I
Sbjct: 199 AIGLGLGVSKVVENKEIKGSLTGVTVGTVTLSGTVTSSQKIWRTFQSLGNIAFAYSYSMI 258

Query: 113 LIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYE 172
           LIEIQDT+KSPP    TM+KA+ +S+  TT+FY+ CG  GYAAFGDN PGNLL   GF  
Sbjct: 259 LIEIQDTVKSPPAEVNTMRKATFVSVAVTTVFYMLCGCVGYAAFGDNAPGNLLAHGGFRN 318

Query: 173 PYWLIDLANAFIVIHLVGGYQVYSQPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPA-- 230
           PYWL+D+AN  IVIHLVG YQVY QP+FA  EK    +FPE+ F+  E  +K  L P   
Sbjct: 319 PYWLLDIANLAIVIHLVGAYQVYCQPLFAFVEKEASRRFPESEFVTKE--IKIQLFPGKP 376

Query: 231 FRWNPLRLCFRTVYVVSVTAIAMSFPYFNQVLGVIGGVIFWPLTIYFPVEMYFKQMNIEA 290
           F  N  RL +RT +V++ T I+M  P+FN V+G++G + FWPLT+YFPVEMY  Q N+  
Sbjct: 377 FNLNLFRLVWRTFFVMTTTLISMLMPFFNDVVGLLGAIGFWPLTVYFPVEMYIAQKNVPR 436

Query: 291 WTRKWVMLRVFSYVCFIVSTFGLVGSIQGIIS 322
           W  KWV L+V S  C  VS     GS+ GI+S
Sbjct: 437 WGTKWVCLQVLSVTCLFVSVAAAAGSVIGIVS 468

Amino acid-proton symporter. Stereospecific transporter with a broad specificity for glutamate and both neutral and basic amino acids. Reduced affinities for asparagine and valine. High affinity transport of the cationic amino acids arginine and lysine, but not of histidine.

Arabidopsis thaliana (taxid: 3702)

>sp|P92934|AAP6_ARATH Amino acid permease 6 OS=Arabidopsis thaliana GN=AAP6 PE=1 SV=1

 Score =  333 bits (855), Expect = 8e-91,   Method: Compositional matrix adjust.
 Identities = 165/328 (50%), Positives = 224/328 (68%), Gaps = 5/328 (1%)

Query: 1   MAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNIQSLSVIAAVMSFAYS 60
           +A+++SNC+H+ GH   C  S+T +M+IF  +Q+ILSQ P+FHN+  LS++AAVMSF Y+
Sbjct: 144 VAVKRSNCFHKNGHNVKCATSNTPFMIIFAIIQIILSQIPNFHNLSWLSILAAVMSFCYA 203

Query: 61  FIGFGLGVAKVIGNG-FVMGSFSGVSTTTSI---EKMWLVAQALGDIAFAYPYSLILIEI 116
            IG GL +AK  G G  V  + +GV+    +   EK+W   QA+GDIAFAY YS +LIEI
Sbjct: 204 SIGVGLSIAKAAGGGEHVRTTLTGVTVGIDVSGAEKIWRTFQAIGDIAFAYAYSTVLIEI 263

Query: 117 QDTLKSPPPA-NQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYW 175
           QDTLK+ PP+ N+ MK+AS + + TTT FY+ CG  GYAAFG++ PGN LTGFGFYEP+W
Sbjct: 264 QDTLKAGPPSENKAMKRASLVGVSTTTFFYMLCGCVGYAAFGNDAPGNFLTGFGFYEPFW 323

Query: 176 LIDLANAFIVIHLVGGYQVYSQPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNP 235
           LID AN  I +HL+G YQV+ QPIF   E    +++P+N F+  E+ +  P    F  N 
Sbjct: 324 LIDFANVCIAVHLIGAYQVFCQPIFQFVESQSAKRWPDNKFITGEYKIHVPCCGDFSINF 383

Query: 236 LRLCFRTVYVVSVTAIAMSFPYFNQVLGVIGGVIFWPLTIYFPVEMYFKQMNIEAWTRKW 295
           LRL +RT YVV    +AM FP+FN  LG+IG   FWPLT+YFP+EM+  Q  I  ++  W
Sbjct: 384 LRLVWRTSYVVVTAVVAMIFPFFNDFLGLIGAASFWPLTVYFPIEMHIAQKKIPKFSFTW 443

Query: 296 VMLRVFSYVCFIVSTFGLVGSIQGIISA 323
             L++ S+ CFIVS     GS+QG+I +
Sbjct: 444 TWLKILSWTCFIVSLVAAAGSVQGLIQS 471

Amino acid-proton symporter. Stereospecific transporter with a broad specificity for tryptophan, proline, and neutral and acidic amino acids. Have an affinity for aspartate in a physiological range. Involved in the uptake of amino acids diffusing out of the xylem tracheids into the xylem parenchyma.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FKS8|LHT1_ARATH Lysine histidine transporter 1 OS=Arabidopsis thaliana GN=LHT1 PE=1 SV=1

 Score =  130 bits (327), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 97/324 (29%), Positives = 157/324 (48%), Gaps = 36/324 (11%)

Query: 11  REGHEAACEYSD----TYYMLIFGAVQLILSQAPDFHNIQSLSVIAAVMSFAYSFIGFGL 66
           ++ HE  C+       TY+++IF +V  +LS  P+F++I  +S+ AAVMS +YS I +  
Sbjct: 143 KKFHELVCDDCKPIKLTYFIMIFASVHFVLSHLPNFNSISGVSLAAAVMSLSYSTIAWAS 202

Query: 67  GVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPP-- 124
             +K +      G +   +T  ++   +     LGD+AFAY    +++EIQ T+ S P  
Sbjct: 203 SASKGVQEDVQYG-YKAKTTAGTVFNFF---SGLGDVAFAYAGHNVVLEIQATIPSTPEK 258

Query: 125 PANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFI 184
           P+   M +   ++ I   + Y      GY  FG+    N+L      +P WLI  AN F+
Sbjct: 259 PSKGPMWRGVIVAYIVVALCYFPVALVGYYIFGNGVEDNILMSLK--KPAWLIATANIFV 316

Query: 185 VIHLVGGYQVYSQPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVY 244
           VIH++G YQ+Y+ P+F   E  + +K      LN     +P          LR   R  Y
Sbjct: 317 VIHVIGSYQIYAMPVFDMMETLLVKK------LN----FRPT-------TTLRFFVRNFY 359

Query: 245 VVSVTAIAMSFPYFNQVLGVIGGVIFWPLTIYFP----VEMYFKQMNIEAWTRKWVMLRV 300
           V +   + M+FP+F  +L   GG  F P T + P    + +Y  +    +W   WV + V
Sbjct: 360 VAATMFVGMTFPFFGGLLAFFGGFAFAPTTYFLPCVIWLAIYKPKKYSLSWWANWVCI-V 418

Query: 301 FSYVCFIVSTFGLVGSIQGIISAK 324
           F     ++S  G + +I  +I AK
Sbjct: 419 FGLFLMVLSPIGGLRTI--VIQAK 440

Amino acid-proton symporter. Transporter with a broad specificity for histidine, lysine, glutamic acid, alanine, serine, proline and glycine. Involved in both apoplastic transport of amino acids in leaves and their uptake by roots.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C733|LHTL1_ARATH Lysine histidine transporter-like 1 OS=Arabidopsis thaliana GN=At1g48640 PE=3 SV=2

 Score =  125 bits (313), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 98/325 (30%), Positives = 157/325 (48%), Gaps = 38/325 (11%)

Query: 11  REGHEAACEYSD----TYYMLIFGAVQLILSQAPDFHNIQSLSVIAAVMSFAYSFIGFGL 66
           ++ HE AC+       +++++IF +   +LS  P+F++I  +S++AAVMS +YS I +  
Sbjct: 150 KKFHEIACQDCSPIRLSFFIMIFASSHFVLSHLPNFNSISGVSLVAAVMSLSYSTIAWTA 209

Query: 67  GVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPP-- 124
             AK +      G  SG + +T +         LG IAFAY    +++EIQ T+ S P  
Sbjct: 210 TAAKGVQEDVQYGYKSGTTASTVLSFF----TGLGGIAFAYAGHNVVLEIQATIPSTPSN 265

Query: 125 PANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFI 184
           P+   M +   ++ +   + Y      GY  FG+    N+L       P W I  AN F+
Sbjct: 266 PSKGPMWRGVVVAYVVVALCYFPVALVGYGVFGNAVLDNVL--MSLETPVWAIATANLFV 323

Query: 185 VIHLVGGYQVYSQPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVY 244
           V+H++G YQ+++ P+F   E ++ +K      LN     KP  +       LR   R VY
Sbjct: 324 VMHVIGSYQIFAMPVFDMVETFLVKK------LN----FKPSTV-------LRFIVRNVY 366

Query: 245 VVSVTAIAMSFPYFNQVLGVIGGVIFWPLTIYFPVEMYF-----KQMNIEAWTRKWVMLR 299
           V     I +  P+F  +L   GG  F P + + P  M+      K+ ++  WT  WV + 
Sbjct: 367 VALTMFIGIMIPFFGGLLAFFGGFAFAPTSYFLPCIMWLLIYKPKRFSLSWWT-NWVCI- 424

Query: 300 VFSYVCFIVSTFGLVGSIQGIISAK 324
           V   V  I+S+ G  G  Q II +K
Sbjct: 425 VLGVVLMILSSIG--GLRQIIIQSK 447

Amino acid transporter.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	326
255586130	461	amino acid transporter, putative [Ricinu	0.996	0.704	0.701	1e-138
225462048	472	PREDICTED: probable amino acid permease	0.996	0.688	0.686	1e-137
224122284	458	amino acid permease [Populus trichocarpa	0.993	0.707	0.691	1e-133
359494348	623	PREDICTED: probable amino acid permease	0.996	0.521	0.667	1e-132
296089993	458	unnamed protein product [Vitis vinifera]	0.996	0.709	0.667	1e-132
224146569	431	amino acid permease [Populus trichocarpa	0.981	0.742	0.675	1e-131
255586132	456	amino acid transporter, putative [Ricinu	0.990	0.708	0.671	1e-127
356501671	461	PREDICTED: probable amino acid permease	0.996	0.704	0.633	1e-126
357495243	467	Amino acid permease [Medicago truncatula	0.996	0.695	0.655	1e-126
224122280	440	amino acid permease [Populus trichocarpa	0.981	0.727	0.662	1e-126

>gi|255586130|ref|XP_002533727.1| amino acid transporter, putative [Ricinus communis] gi|223526365|gb|EEF28658.1| amino acid transporter, putative [Ricinus communis]

 Score =  496 bits (1278), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 228/325 (70%), Positives = 278/325 (85%)

Query: 2   AIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNIQSLSVIAAVMSFAYSF 61
           AI+KSNCYH+EGH AACE+SDT YMLIFGA Q+I+SQ PDFHN++ LS++AAVMSF YS 
Sbjct: 137 AIRKSNCYHKEGHSAACEFSDTSYMLIFGAFQIIVSQIPDFHNMEWLSILAAVMSFTYSS 196

Query: 62  IGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLK 121
           IGFGLG+A+VI NG+ MGS +GVS +++ +K+W ++QALGDIAFAYPYSLIL+EIQDTLK
Sbjct: 197 IGFGLGLAQVIENGYAMGSITGVSASSAADKVWNISQALGDIAFAYPYSLILLEIQDTLK 256

Query: 122 SPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLAN 181
           SPP  N+TM+KAST++++ TT FYL CG FGYAAFG++TPGNLLTGFGFYEPYWLID AN
Sbjct: 257 SPPTENETMRKASTIALVVTTFFYLCCGAFGYAAFGEDTPGNLLTGFGFYEPYWLIDFAN 316

Query: 182 AFIVIHLVGGYQVYSQPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFR 241
           A IV+HLVGGYQVYSQP+FA  EKW  E+ P + F+NN + LK PL+PAF  N  R+CFR
Sbjct: 317 ACIVLHLVGGYQVYSQPVFATIEKWFAERHPASRFINNNYSLKLPLLPAFGLNAFRICFR 376

Query: 242 TVYVVSVTAIAMSFPYFNQVLGVIGGVIFWPLTIYFPVEMYFKQMNIEAWTRKWVMLRVF 301
           T+YVVS TAI+M FPYFNQV+G++G + FWPLTIYFPVEMYF+Q NIEAWT KW+MLR F
Sbjct: 377 TLYVVSTTAISMIFPYFNQVIGLLGALNFWPLTIYFPVEMYFRQRNIEAWTIKWIMLRAF 436

Query: 302 SYVCFIVSTFGLVGSIQGIISAKLS 326
           S V F+V+   LVGS++G+ISAKLS
Sbjct: 437 SIVVFLVAAIALVGSVEGVISAKLS 461

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225462048|ref|XP_002268936.1| PREDICTED: probable amino acid permease 7 [Vitis vinifera] gi|296089992|emb|CBI39811.3| unnamed protein product [Vitis vinifera]

 Score =  492 bits (1267), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 223/325 (68%), Positives = 271/325 (83%)

Query: 2   AIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNIQSLSVIAAVMSFAYSF 61
           AI KSNCYHREGH+AAC Y D  +ML+FGA+Q++ SQ PDFHNI+ LSV+AAVMSF YSF
Sbjct: 148 AINKSNCYHREGHDAACAYGDNSFMLVFGAIQIVTSQIPDFHNIEWLSVVAAVMSFCYSF 207

Query: 62  IGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLK 121
           IG GLG+AK IG+G + GS  G+ST+T  EK+WL++QALGDIAFAYPYSLI IEIQDTLK
Sbjct: 208 IGLGLGLAKTIGDGKIKGSIEGISTSTVAEKVWLISQALGDIAFAYPYSLISIEIQDTLK 267

Query: 122 SPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLAN 181
           SPPP ++TMKKAST++I  TT+FYLFCGGFGYAAFGD+TPGNLLTGFGFYEPYWL+D AN
Sbjct: 268 SPPPESETMKKASTLAITVTTLFYLFCGGFGYAAFGDDTPGNLLTGFGFYEPYWLVDFAN 327

Query: 182 AFIVIHLVGGYQVYSQPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFR 241
           A +V HLVGGYQ+Y+QP+F   ++W  +KFP +GF+NN++  K PL+PAFR N  RLCFR
Sbjct: 328 ACVVAHLVGGYQIYTQPLFGMVDRWSAQKFPNSGFVNNDYVFKLPLLPAFRVNLFRLCFR 387

Query: 242 TVYVVSVTAIAMSFPYFNQVLGVIGGVIFWPLTIYFPVEMYFKQMNIEAWTRKWVMLRVF 301
           T YV + T IAM FPYFNQVLGVIG + FWPL IYFPVEMYF Q  I  WTR W++L++F
Sbjct: 388 TAYVGTTTGIAMIFPYFNQVLGVIGAMNFWPLAIYFPVEMYFVQRKIGVWTRMWLLLQIF 447

Query: 302 SYVCFIVSTFGLVGSIQGIISAKLS 326
           S+VC +V+ F  VGS++G+I+AKLS
Sbjct: 448 SFVCLVVTVFAFVGSVEGLITAKLS 472

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224122284|ref|XP_002330585.1| amino acid permease [Populus trichocarpa] gi|222872143|gb|EEF09274.1| amino acid permease [Populus trichocarpa]

 Score =  481 bits (1237), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 224/324 (69%), Positives = 267/324 (82%)

Query: 2   AIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNIQSLSVIAAVMSFAYSF 61
           AIQ+SNCYHREGH+A+CEY D  YML+FGAVQ+++SQ PDFHN++ LSVIAA+MSF YSF
Sbjct: 134 AIQRSNCYHREGHKASCEYGDAIYMLLFGAVQILVSQIPDFHNMEWLSVIAAIMSFTYSF 193

Query: 62  IGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLK 121
           IGFGLGVA+VI NG + GS +GVS  T+  K+WL  +ALGDIAFAYPYS+IL+EIQDTLK
Sbjct: 194 IGFGLGVAQVIENGTIKGSIAGVSAATTANKLWLAFEALGDIAFAYPYSIILLEIQDTLK 253

Query: 122 SPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLAN 181
           SPPP N+TMKKAS +SI  TT FYL CG FGYAAFG+NTPGNLLTGFGF+EPYWL+DLAN
Sbjct: 254 SPPPENKTMKKASMISIFITTFFYLCCGCFGYAAFGNNTPGNLLTGFGFFEPYWLVDLAN 313

Query: 182 AFIVIHLVGGYQVYSQPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFR 241
           A +V+HLVGGYQ+YSQP+FA  E W   KFP +GF+NN    K PL+     N  RLCFR
Sbjct: 314 ACVVLHLVGGYQIYSQPVFAFVEGWFSRKFPSSGFVNNFHSFKLPLIRPLHINLFRLCFR 373

Query: 242 TVYVVSVTAIAMSFPYFNQVLGVIGGVIFWPLTIYFPVEMYFKQMNIEAWTRKWVMLRVF 301
           TVYV S TA+AM+FPYFNQVLGV+G + FWPL IYFPVEMYF Q  I AWTRKW++LR F
Sbjct: 374 TVYVASTTAVAMAFPYFNQVLGVLGALNFWPLAIYFPVEMYFVQKKIGAWTRKWIVLRTF 433

Query: 302 SYVCFIVSTFGLVGSIQGIISAKL 325
           S+ C +++  GL+GSI+G+ISAKL
Sbjct: 434 SFACLLITIAGLLGSIEGLISAKL 457

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359494348|ref|XP_002268981.2| PREDICTED: probable amino acid permease 7-like [Vitis vinifera]

 Score =  479 bits (1232), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 217/325 (66%), Positives = 268/325 (82%)

Query: 2   AIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNIQSLSVIAAVMSFAYSF 61
           AIQ+SNCYH+EGH A+C Y DT+YML+FG +Q+++SQ PDFHN++ LS++AA+MSF+Y+ 
Sbjct: 299 AIQRSNCYHKEGHNASCAYGDTFYMLLFGVIQIVMSQIPDFHNMEWLSIVAAIMSFSYAS 358

Query: 62  IGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLK 121
           IG GLG AKV+ NG + GS  G+S + + +K+WLV QALGDIAFAYPYSLIL+EIQDTLK
Sbjct: 359 IGLGLGFAKVVENGMIKGSIEGISASNTADKIWLVFQALGDIAFAYPYSLILLEIQDTLK 418

Query: 122 SPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLAN 181
           +PPP N+TMKKAS  +I+ TT FYL CG FGYAAFGD+TPGNLLTGFGF+EPYWLID AN
Sbjct: 419 APPPENKTMKKASMSAILITTFFYLCCGCFGYAAFGDDTPGNLLTGFGFFEPYWLIDFAN 478

Query: 182 AFIVIHLVGGYQVYSQPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFR 241
           A I++HLVGGYQVYSQP+FA  E+W+  KFP +GF+N  + LK PL+PAF+ N LR+CFR
Sbjct: 479 ACIILHLVGGYQVYSQPVFAFVERWVTRKFPNSGFVNKFYTLKLPLLPAFQMNLLRICFR 538

Query: 242 TVYVVSVTAIAMSFPYFNQVLGVIGGVIFWPLTIYFPVEMYFKQMNIEAWTRKWVMLRVF 301
           T YV+S T IAM FPYFNQVLG++G + FWPL IYFPVEMY  Q  I AWTR W++LR F
Sbjct: 539 TTYVISTTGIAMIFPYFNQVLGLLGALNFWPLAIYFPVEMYLVQKKIGAWTRTWIILRTF 598

Query: 302 SYVCFIVSTFGLVGSIQGIISAKLS 326
           S VC +VS   LVGS++GIISAK+S
Sbjct: 599 SLVCLLVSILTLVGSVEGIISAKVS 623

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296089993|emb|CBI39812.3| unnamed protein product [Vitis vinifera]

 Score =  478 bits (1230), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 217/325 (66%), Positives = 268/325 (82%)

Query: 2   AIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNIQSLSVIAAVMSFAYSF 61
           AIQ+SNCYH+EGH A+C Y DT+YML+FG +Q+++SQ PDFHN++ LS++AA+MSF+Y+ 
Sbjct: 134 AIQRSNCYHKEGHNASCAYGDTFYMLLFGVIQIVMSQIPDFHNMEWLSIVAAIMSFSYAS 193

Query: 62  IGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLK 121
           IG GLG AKV+ NG + GS  G+S + + +K+WLV QALGDIAFAYPYSLIL+EIQDTLK
Sbjct: 194 IGLGLGFAKVVENGMIKGSIEGISASNTADKIWLVFQALGDIAFAYPYSLILLEIQDTLK 253

Query: 122 SPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLAN 181
           +PPP N+TMKKAS  +I+ TT FYL CG FGYAAFGD+TPGNLLTGFGF+EPYWLID AN
Sbjct: 254 APPPENKTMKKASMSAILITTFFYLCCGCFGYAAFGDDTPGNLLTGFGFFEPYWLIDFAN 313

Query: 182 AFIVIHLVGGYQVYSQPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFR 241
           A I++HLVGGYQVYSQP+FA  E+W+  KFP +GF+N  + LK PL+PAF+ N LR+CFR
Sbjct: 314 ACIILHLVGGYQVYSQPVFAFVERWVTRKFPNSGFVNKFYTLKLPLLPAFQMNLLRICFR 373

Query: 242 TVYVVSVTAIAMSFPYFNQVLGVIGGVIFWPLTIYFPVEMYFKQMNIEAWTRKWVMLRVF 301
           T YV+S T IAM FPYFNQVLG++G + FWPL IYFPVEMY  Q  I AWTR W++LR F
Sbjct: 374 TTYVISTTGIAMIFPYFNQVLGLLGALNFWPLAIYFPVEMYLVQKKIGAWTRTWIILRTF 433

Query: 302 SYVCFIVSTFGLVGSIQGIISAKLS 326
           S VC +VS   LVGS++GIISAK+S
Sbjct: 434 SLVCLLVSILTLVGSVEGIISAKVS 458

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224146569|ref|XP_002336318.1| amino acid permease [Populus trichocarpa] gi|222834652|gb|EEE73115.1| amino acid permease [Populus trichocarpa]

 Score =  472 bits (1215), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 216/320 (67%), Positives = 262/320 (81%)

Query: 2   AIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNIQSLSVIAAVMSFAYSF 61
           AIQKSNCYH+EGHEA CEY  + YML+FG VQ++LSQ PDFHN+Q LS++AA+MS +Y+ 
Sbjct: 112 AIQKSNCYHKEGHEATCEYGGSLYMLLFGVVQVVLSQVPDFHNLQWLSIVAAIMSVSYAS 171

Query: 62  IGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLK 121
           IGF LG A+VI NGFV G  +GVS   + +K+W V+QALGDIAFAYPY LIL+EIQDTLK
Sbjct: 172 IGFALGFAQVIANGFVKGGIAGVSAYRAADKVWNVSQALGDIAFAYPYPLILLEIQDTLK 231

Query: 122 SPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLAN 181
           SPP  +++MKKAS ++++ TT FYL CGGFGYAAFG+ TPGNLLTGFGFYEPYWLID AN
Sbjct: 232 SPPSESKSMKKASIIAVVVTTFFYLCCGGFGYAAFGEKTPGNLLTGFGFYEPYWLIDFAN 291

Query: 182 AFIVIHLVGGYQVYSQPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFR 241
           A IV+HL GGYQVYSQP+FA  E WI EK+PEN FLN     K P +P F+ N LRLCFR
Sbjct: 292 ACIVLHLAGGYQVYSQPLFAVIENWIAEKYPENRFLNKNLTCKFPRLPGFQLNLLRLCFR 351

Query: 242 TVYVVSVTAIAMSFPYFNQVLGVIGGVIFWPLTIYFPVEMYFKQMNIEAWTRKWVMLRVF 301
           T+YVVS T IA+ FPYFNQV+G++GG  FWPL +YFPVEMYFKQ NIEAWT KW+MLR F
Sbjct: 352 TIYVVSTTVIAVMFPYFNQVIGLLGGFGFWPLAVYFPVEMYFKQKNIEAWTIKWIMLRAF 411

Query: 302 SYVCFIVSTFGLVGSIQGII 321
           S +CF+V+ F L+GS++G++
Sbjct: 412 SVICFLVTAFALIGSVEGLM 431

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255586132|ref|XP_002533728.1| amino acid transporter, putative [Ricinus communis] gi|223526366|gb|EEF28659.1| amino acid transporter, putative [Ricinus communis]

 Score =  461 bits (1185), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 217/323 (67%), Positives = 257/323 (79%)

Query: 2   AIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNIQSLSVIAAVMSFAYSF 61
           AIQKSNCYHREGH A C Y DTY+ML+FG VQ+++SQ P+FHN++ LSVIAA+MSF YSF
Sbjct: 132 AIQKSNCYHREGHRAPCSYEDTYFMLLFGFVQIVVSQIPNFHNMEWLSVIAAIMSFTYSF 191

Query: 62  IGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLK 121
           IGFGLG AKVI NG + GS +GV      +K+WL  +ALGDIAFAYPYSLIL+EIQDTLK
Sbjct: 192 IGFGLGFAKVIENGRIKGSITGVPAANLADKLWLAFEALGDIAFAYPYSLILLEIQDTLK 251

Query: 122 SPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLAN 181
           S PP N+TMKK S ++I  TT FYL CG FGYAAFG+NTPGNLLTGFGFYEPYWLID AN
Sbjct: 252 SSPPENKTMKKGSMIAIFVTTFFYLCCGCFGYAAFGNNTPGNLLTGFGFYEPYWLIDFAN 311

Query: 182 AFIVIHLVGGYQVYSQPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFR 241
           A IV+HLVGGYQ+YSQP+FA  E W   K+P + F+N  + +K P  P  + N LRLC R
Sbjct: 312 ACIVLHLVGGYQIYSQPVFAFVEGWFGNKYPRSRFVNKFYTMKLPFSPPLQVNILRLCSR 371

Query: 242 TVYVVSVTAIAMSFPYFNQVLGVIGGVIFWPLTIYFPVEMYFKQMNIEAWTRKWVMLRVF 301
           T YV + TAIAM+FPYFNQ+LGV+G + FWPL IYFPVEMYF Q  I  WTRKW++LR F
Sbjct: 372 TAYVAATTAIAMTFPYFNQILGVLGALNFWPLAIYFPVEMYFVQKKIGPWTRKWIVLRTF 431

Query: 302 SYVCFIVSTFGLVGSIQGIISAK 324
           S+VC +VS  GL+GSI+G+ISAK
Sbjct: 432 SFVCLLVSIVGLIGSIEGLISAK 454

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356501671|ref|XP_003519647.1| PREDICTED: probable amino acid permease 7-like [Glycine max]

 Score =  458 bits (1179), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 206/325 (63%), Positives = 263/325 (80%)

Query: 2   AIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNIQSLSVIAAVMSFAYSF 61
           AI KSNCYH+EGH+A C+Y D  YM++FG VQ+I+S  PD HN+  +S++AA+MSF YS 
Sbjct: 137 AILKSNCYHKEGHQAPCKYGDAVYMMLFGLVQIIMSFIPDLHNMAWVSIVAAIMSFTYSS 196

Query: 62  IGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLK 121
           IG GLG+  VI NG +MGS +GV  +   +K+WLV Q +GDIAFAYPY++IL+EIQDTL+
Sbjct: 197 IGLGLGITTVIENGRIMGSLTGVPASNIADKLWLVFQGIGDIAFAYPYTVILLEIQDTLE 256

Query: 122 SPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLAN 181
           SPPP N+TMKKAS ++I+ TT FYL CG FGYAAFG+ TPGNLLTGFGFYEPYWLID AN
Sbjct: 257 SPPPENKTMKKASMIAILITTFFYLCCGCFGYAAFGNQTPGNLLTGFGFYEPYWLIDFAN 316

Query: 182 AFIVIHLVGGYQVYSQPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFR 241
           A IV+HLVGGYQ+YSQPI+   ++W  +++P +GF+NN + LK P +PAF+ N  R+CFR
Sbjct: 317 ACIVLHLVGGYQIYSQPIYGAVDRWCSKRYPNSGFVNNFYQLKLPRLPAFQLNMFRICFR 376

Query: 242 TVYVVSVTAIAMSFPYFNQVLGVIGGVIFWPLTIYFPVEMYFKQMNIEAWTRKWVMLRVF 301
           T YVVS T +A+ FPYFNQV+GV+G + FWPL IYFPVEMYF Q  +EAW+RKW++LR F
Sbjct: 377 TAYVVSTTGLAILFPYFNQVIGVLGALGFWPLAIYFPVEMYFVQRKVEAWSRKWIVLRTF 436

Query: 302 SYVCFIVSTFGLVGSIQGIISAKLS 326
           S++CF+VS  GL+GS++GIIS KLS
Sbjct: 437 SFICFLVSLLGLIGSLEGIISEKLS 461

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357495243|ref|XP_003617910.1| Amino acid permease [Medicago truncatula] gi|355519245|gb|AET00869.1| Amino acid permease [Medicago truncatula]

 Score =  458 bits (1179), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 213/325 (65%), Positives = 260/325 (80%)

Query: 2   AIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNIQSLSVIAAVMSFAYSF 61
           AI KSNCYH+EGHEA C+Y DT YM++FG VQ+I+S  PD HN+  LSV+AAVMSF YS 
Sbjct: 143 AILKSNCYHKEGHEAHCKYGDTIYMILFGLVQVIMSFIPDLHNMALLSVVAAVMSFTYSS 202

Query: 62  IGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLK 121
           IG GLGV  VI NG +MGS +GV  +   +K+WLV QALGDIAFAYPY+ IL+EIQDTL+
Sbjct: 203 IGLGLGVTNVIENGRIMGSVAGVPASNIADKLWLVFQALGDIAFAYPYTTILLEIQDTLE 262

Query: 122 SPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLAN 181
           SPP  N+TMKKAS ++I+ TT FYL C  FGYAAFG+ TPGNLLTGFGFYEPYWLID AN
Sbjct: 263 SPPAENKTMKKASMIAILITTFFYLCCACFGYAAFGNQTPGNLLTGFGFYEPYWLIDFAN 322

Query: 182 AFIVIHLVGGYQVYSQPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFR 241
           A IV+HLVGGYQ+YSQP +   ++W   K+P +GF+NN + LK PL+PAF+ N LR+CFR
Sbjct: 323 ACIVLHLVGGYQIYSQPTYTAADRWCSRKYPNSGFVNNFYQLKLPLLPAFQLNMLRICFR 382

Query: 242 TVYVVSVTAIAMSFPYFNQVLGVIGGVIFWPLTIYFPVEMYFKQMNIEAWTRKWVMLRVF 301
           T YV+S T +A+ FPYFN+VLGV+G + FWPLTIYFPVEMYF Q  IEAW+ KW++LR F
Sbjct: 383 TAYVISTTGLAIMFPYFNEVLGVLGALGFWPLTIYFPVEMYFVQNKIEAWSTKWIVLRTF 442

Query: 302 SYVCFIVSTFGLVGSIQGIISAKLS 326
           S+VC +V+   LVGS++GIIS KLS
Sbjct: 443 SFVCLLVTVVSLVGSLEGIISEKLS 467

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224122280|ref|XP_002330584.1| amino acid permease [Populus trichocarpa] gi|222872142|gb|EEF09273.1| amino acid permease [Populus trichocarpa]

 Score =  457 bits (1177), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 212/320 (66%), Positives = 259/320 (80%)

Query: 2   AIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNIQSLSVIAAVMSFAYSF 61
           AI++SNCYH +GH A C++ D   ML+FGAVQ++ SQ PDFH+I+ LSVIAA+MSFAYSF
Sbjct: 121 AIRRSNCYHDKGHAAPCKHKDIPNMLMFGAVQIVASQIPDFHSIKWLSVIAAIMSFAYSF 180

Query: 62  IGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLK 121
            GFGLG AKVI NG + GS +G   +T  +K+WL  QALGDIA++YPY+L+L+EIQDTLK
Sbjct: 181 TGFGLGFAKVIENGMIKGSIAGAPASTRAKKLWLAFQALGDIAYSYPYALVLLEIQDTLK 240

Query: 122 SPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLAN 181
           SPPP N+TMKKAS +++I TT FYL CG FGYAAFG+NTPGNLLTGFGFYEPYWLID AN
Sbjct: 241 SPPPENKTMKKASMIAMILTTFFYLCCGCFGYAAFGNNTPGNLLTGFGFYEPYWLIDFAN 300

Query: 182 AFIVIHLVGGYQVYSQPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFR 241
           A +V+HLVGGYQ++SQP+F   E+W  EKFP NGF+N  +  K PL+P+F+ N  R+CFR
Sbjct: 301 ACVVLHLVGGYQLFSQPVFEFAERWFSEKFPSNGFVNKFYNFKLPLLPSFQINLFRICFR 360

Query: 242 TVYVVSVTAIAMSFPYFNQVLGVIGGVIFWPLTIYFPVEMYFKQMNIEAWTRKWVMLRVF 301
           T YVVS TA+A  FPYFNQVLG++G + FWPL IYFPVEMYF Q  IEAWTRKW++LR F
Sbjct: 361 TAYVVSTTAVAAVFPYFNQVLGLLGALNFWPLAIYFPVEMYFVQNKIEAWTRKWIVLRTF 420

Query: 302 SYVCFIVSTFGLVGSIQGII 321
           S  C +VS  GL+GSI+GII
Sbjct: 421 SLACLLVSIVGLIGSIEGII 440

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	326
TAIR|locus:2172868	467	AAP7 "amino acid permease 7" [	0.990	0.691	0.577	2.5e-106
TAIR|locus:2184707	493	AAP2 "amino acid permease 2" [	0.984	0.651	0.527	2e-97
TAIR|locus:2031402	476	AAP3 "amino acid permease 3" [	0.984	0.674	0.532	1.6e-93
TAIR|locus:2201871	475	AAP8 "amino acid permease 8" [	0.987	0.677	0.525	1.3e-91
TAIR|locus:2163981	466	AAP4 "amino acid permease 4" [	0.984	0.688	0.506	2.5e-90
TAIR|locus:2168912	481	AAP6 "amino acid permease 6" [	0.990	0.671	0.503	3.1e-90
TAIR|locus:2016600	485	AAP1 "amino acid permease 1" [	0.990	0.665	0.5	1.4e-89
TAIR|locus:2205876	480	AAP5 "amino acid permease 5" [	0.981	0.666	0.518	6.7e-88
UNIPROTKB|Q85V22	441	ht "Histidine amino acid trans	0.592	0.437	0.383	8.4e-41
TAIR|locus:2008605	441	AT1G67640 "AT1G67640" [Arabido	0.558	0.412	0.347	8.3e-37

TAIR|locus:2172868 AAP7 "amino acid permease 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 1052 (375.4 bits), Expect = 2.5e-106, P = 2.5e-106
 Identities = 189/327 (57%), Positives = 243/327 (74%)

Query:     2 AIQKSNCYHREGHEAACEYSDT--YYMLIFGAVQLILSQAPDFHNIQSLSVIAAVMSFAY 59
             AI KSNCYHR GH A C Y D   Y+M++FG  Q+ +SQ P+FHN+  LS++AA+MSF Y
Sbjct:   139 AIMKSNCYHRNGHNATCSYGDNNNYFMVLFGLTQIFMSQIPNFHNMVWLSLVAAIMSFTY 198

Query:    60 SFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDT 119
             SFIG GL + K+I N  + GS  G+      EK+W+V QALG+IAF+YP+S+IL+EIQDT
Sbjct:   199 SFIGIGLALGKIIENRKIEGSIRGIPAENRGEKVWIVFQALGNIAFSYPFSIILLEIQDT 258

Query:   120 LKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDL 179
             L+SPP   QTMKKAST+++   T F+  CG FGYAAFGD+TPGNLLTGFGFYEP+WL+D 
Sbjct:   259 LRSPPAEKQTMKKASTVAVFIQTFFFFCCGCFGYAAFGDSTPGNLLTGFGFYEPFWLVDF 318

Query:   180 ANAFIVIHLVGGYQVYSQPIFAHFEKWICEKFPENGFLNNEFFLKPPLM--PAFRWNPLR 237
             ANA IV+HLVGGYQVYSQPIFA  E+ + +K+PEN F+   +  K PL+     R NP+R
Sbjct:   319 ANACIVLHLVGGYQVYSQPIFAAAERSLTKKYPENKFIARFYGFKLPLLRGETVRLNPMR 378

Query:   238 LCFRTVYVVSVTAIAMSFPYFNQVLGVIGGVIFWPLTIYFPVEMYFKQMNIEAWTRKWVM 297
             +C RT+YV+  T +A+ FPYFN+VLGV+G + FWPL +YFPVEM   Q  I +WTR W++
Sbjct:   379 MCLRTMYVLITTGVAVMFPYFNEVLGVVGALAFWPLAVYFPVEMCILQKKIRSWTRPWLL 438

Query:   298 LRVFSYVCFIVSTFGLVGSIQGIISAK 324
             LR FS+VC +V    LVGSI G++ AK
Sbjct:   439 LRGFSFVCLLVCLLSLVGSIYGLVGAK 465

GO:0005886 "plasma membrane" evidence=ISM

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS;IDA

GO:0006865 "amino acid transport" evidence=ISS

GO:0016020 "membrane" evidence=ISS

TAIR|locus:2184707 AAP2 "amino acid permease 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 968 (345.8 bits), Expect = 2.0e-97, P = 2.0e-97
 Identities = 171/324 (52%), Positives = 235/324 (72%)

Query:     1 MAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNIQSLSVIAAVMSFAYS 60
             MAI++SNC+H+ G +  C  S   YM++FG  +++LSQ PDF  I  +S++AAVMSF YS
Sbjct:   157 MAIKRSNCFHKSGGKDPCHMSSNPYMIVFGVAEILLSQVPDFDQIWWISIVAAVMSFTYS 216

Query:    61 FIGFGLGVAKVIGNGFVMGSFSGVS--TTTSIEKMWLVAQALGDIAFAYPYSLILIEIQD 118
              IG  LG+ +V  NG   GS +G+S  T T  +K+W   QALGDIAFAY YS++LIEIQD
Sbjct:   217 AIGLALGIVQVAANGVFKGSLTGISIGTVTQTQKIWRTFQALGDIAFAYSYSVVLIEIQD 276

Query:   119 TLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLID 178
             T++SPP  ++TMKKA+ +SI  TTIFY+ CG  GYAAFGD  PGNLLTGFGFY P+WL+D
Sbjct:   277 TVRSPPAESKTMKKATKISIAVTTIFYMLCGSMGYAAFGDAAPGNLLTGFGFYNPFWLLD 336

Query:   179 LANAFIVIHLVGGYQVYSQPIFAHFEKWICEKFPENGFLNNEFFLK-PPLMPAFRWNPLR 237
             +ANA IV+HLVG YQV++QPIFA  EK + E++P+N FL+ EF ++ P     ++ N  R
Sbjct:   337 IANAAIVVHLVGAYQVFAQPIFAFIEKSVAERYPDNDFLSKEFEIRIPGFKSPYKVNVFR 396

Query:   238 LCFRTVYVVSVTAIAMSFPYFNQVLGVIGGVIFWPLTIYFPVEMYFKQMNIEAWTRKWVM 297
             + +R+ +VV+ T I+M  P+FN V+G++G + FWPLT+YFPVEMY KQ  +E W+ +WV 
Sbjct:   397 MVYRSGFVVTTTVISMLMPFFNDVVGILGALGFWPLTVYFPVEMYIKQRKVEKWSTRWVC 456

Query:   298 LRVFSYVCFIVSTFGLVGSIQGII 321
             L++ S  C ++S    VGSI G++
Sbjct:   457 LQMLSVACLVISVVAGVGSIAGVM 480

GO:0005886 "plasma membrane" evidence=ISM

GO:0006865 "amino acid transport" evidence=ISS

GO:0015171 "amino acid transmembrane transporter activity" evidence=IGI;ISS

GO:0016020 "membrane" evidence=ISS

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006833 "water transport" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0009750 "response to fructose stimulus" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0030003 "cellular cation homeostasis" evidence=RCA

GO:0070838 "divalent metal ion transport" evidence=RCA

GO:0015800 "acidic amino acid transport" evidence=IDA

GO:0015804 "neutral amino acid transport" evidence=IDA

GO:0005887 "integral to plasma membrane" evidence=TAS

TAIR|locus:2031402 AAP3 "amino acid permease 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 931 (332.8 bits), Expect = 1.6e-93, P = 1.6e-93
 Identities = 172/323 (53%), Positives = 226/323 (69%)

Query:     1 MAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNIQSLSVIAAVMSFAYS 60
             MAI++SNC+H+ G +  C  +   YM+ FG VQ++ SQ PDF  +  LS++AAVMSF YS
Sbjct:   141 MAIKRSNCFHKSGGKDPCHMNSNPYMIAFGLVQILFSQIPDFDQLWWLSILAAVMSFTYS 200

Query:    61 FIGFGLGVAKVIGNGFVMGSFSGVS--TTTSIEKMWLVAQALGDIAFAYPYSLILIEIQD 118
               G  LG+A+V+ NG V GS +G+S    T  +K+W   QALGDIAFAY YS+ILIEIQD
Sbjct:   201 SAGLALGIAQVVVNGKVKGSLTGISIGAVTETQKIWRTFQALGDIAFAYSYSIILIEIQD 260

Query:   119 TLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLID 178
             T+KSPP   +TMKKA+ +S+  TT+FY+ CG  GYAAFGD +PGNLLTGFGFY PYWL+D
Sbjct:   261 TVKSPPSEEKTMKKATLVSVSVTTMFYMLCGCMGYAAFGDLSPGNLLTGFGFYNPYWLLD 320

Query:   179 LANAFIVIHLVGGYQVYSQPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRL 238
             +ANA IVIHL+G YQVY QP+FA  EK    +FP++ F+  +  +  P     R N  RL
Sbjct:   321 IANAAIVIHLIGAYQVYCQPLFAFIEKQASIQFPDSEFIAKDIKIPIPGFKPLRLNVFRL 380

Query:   239 CFRTVYVVSVTAIAMSFPYFNQVLGVIGGVIFWPLTIYFPVEMYFKQMNIEAWTRKWVML 298
              +RTV+V+  T I+M  P+FN V+G++G + FWPLT+YFPVEMY  Q  I  W+ +WV L
Sbjct:   381 IWRTVFVIITTVISMLLPFFNDVVGLLGALGFWPLTVYFPVEMYIAQKKIPRWSTRWVCL 440

Query:   299 RVFSYVCFIVSTFGLVGSIQGII 321
             +VFS  C +VS     GSI G++
Sbjct:   441 QVFSLGCLVVSIAAAAGSIAGVL 463

GO:0005886 "plasma membrane" evidence=ISM

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0015802 "basic amino acid transport" evidence=RCA;IDA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006820 "anion transport" evidence=RCA

GO:0006862 "nucleotide transport" evidence=RCA

GO:0006865 "amino acid transport" evidence=RCA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0015696 "ammonium transport" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0043090 "amino acid import" evidence=RCA

GO:0043269 "regulation of ion transport" evidence=RCA

TAIR|locus:2201871 AAP8 "amino acid permease 8" [Arabidopsis thaliana (taxid:3702)]

 Score = 913 (326.5 bits), Expect = 1.3e-91, P = 1.3e-91
 Identities = 172/327 (52%), Positives = 229/327 (70%)

Query:     1 MAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNIQSLSVIAAVMSFAYS 60
             +AI KSNCYH +GH+A C  S+  YM  FG VQ+ILSQ P+FH +  LS+IAAVMSF+Y+
Sbjct:   139 VAIGKSNCYHDKGHKAKCSVSNYPYMAAFGIVQIILSQLPNFHKLSFLSIIAAVMSFSYA 198

Query:    61 FIGFGLGVAKV----IGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEI 116
              IG GL +A V    IG   + G+  GV  T S EK+W + QA+GDIAF+Y ++ ILIEI
Sbjct:   199 SIGIGLAIATVASGKIGKTELTGTVIGVDVTAS-EKVWKLFQAIGDIAFSYAFTTILIEI 257

Query:   117 QDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWL 176
             QDTL+S PP N+ MK+AS + + TTT+FY+ CG  GYAAFG+  PG+ LT FGFYEPYWL
Sbjct:   258 QDTLRSSPPENKVMKRASLVGVSTTTVFYILCGCIGYAAFGNQAPGDFLTDFGFYEPYWL 317

Query:   177 IDLANAFIVIHLVGGYQVYSQPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPL 236
             ID ANA I +HL+G YQVY+QP F   E+   +K+P++ F+N E+  K PL+   R N  
Sbjct:   318 IDFANACIALHLIGAYQVYAQPFFQFVEENCNKKWPQSNFINKEYSSKVPLLGKCRVNLF 377

Query:   237 RLCFRTVYVVSVTAIAMSFPYFNQVLGVIGGVIFWPLTIYFPVEMYFKQMNIEAWTRKWV 296
             RL +RT YVV  T +AM FP+FN +LG++G   FWPLT+YFPV M+  Q  ++ ++R+W+
Sbjct:   378 RLVWRTCYVVLTTFVAMIFPFFNAILGLLGAFAFWPLTVYFPVAMHIAQAKVKKYSRRWL 437

Query:   297 MLRVFSYVCFIVSTFGLVGSIQGIISA 323
              L +   VC IVS    VGSI G+I++
Sbjct:   438 ALNLLVLVCLIVSALAAVGSIIGLINS 464

GO:0005886 "plasma membrane" evidence=ISM

GO:0015171 "amino acid transmembrane transporter activity" evidence=IGI;ISS

GO:0006865 "amino acid transport" evidence=IGI

GO:0016020 "membrane" evidence=ISS

TAIR|locus:2163981 AAP4 "amino acid permease 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 901 (322.2 bits), Expect = 2.5e-90, P = 2.5e-90
 Identities = 164/324 (50%), Positives = 225/324 (69%)

Query:     1 MAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNIQSLSVIAAVMSFAYS 60
             MAI++SNC+H  G +  C  S   YM++FG  +++LSQ  DF  I  LS++AA+MSF YS
Sbjct:   130 MAIKRSNCFHESGGKNPCHMSSNPYMIMFGVTEILLSQIKDFDQIWWLSIVAAIMSFTYS 189

Query:    61 FIGFGLGVAKVIGNGFVMGSFSGVS--TTTSIEKMWLVAQALGDIAFAYPYSLILIEIQD 118
              IG  LG+ +V  NG V GS +G+S    T  +K+W   QALGDIAFAY YS++LIEIQD
Sbjct:   190 AIGLALGIIQVAANGVVKGSLTGISIGAVTQTQKIWRTFQALGDIAFAYSYSVVLIEIQD 249

Query:   119 TLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLID 178
             T++SPP  ++TMK A+ +SI  TT FY+ CG  GYAAFGD  PGNLLTGFGFY P+WL+D
Sbjct:   250 TVRSPPAESKTMKIATRISIAVTTTFYMLCGCMGYAAFGDKAPGNLLTGFGFYNPFWLLD 309

Query:   179 LANAFIVIHLVGGYQVYSQPIFAHFEKWICEKFPENGFLNNEFFLK-PPLMPAFRWNPLR 237
             +ANA IVIHLVG YQV++QPIFA  EK    +FP++  +  E+ ++ P     ++ N  R
Sbjct:   310 VANAAIVIHLVGAYQVFAQPIFAFIEKQAAARFPDSDLVTKEYEIRIPGFRSPYKVNVFR 369

Query:   238 LCFRTVYVVSVTAIAMSFPYFNQVLGVIGGVIFWPLTIYFPVEMYFKQMNIEAWTRKWVM 297
               +R+ +VV  T I+M  P+FN V+G++G + FWPLT+YFPVEMY +Q  +E W+ KWV 
Sbjct:   370 AVYRSGFVVLTTVISMLMPFFNDVVGILGALGFWPLTVYFPVEMYIRQRKVERWSMKWVC 429

Query:   298 LRVFSYVCFIVSTFGLVGSIQGII 321
             L++ S  C +++    VGSI G++
Sbjct:   430 LQMLSCGCLMITLVAGVGSIAGVM 453

GO:0005886 "plasma membrane" evidence=ISM

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0006865 "amino acid transport" evidence=RCA;TAS

GO:0015172 "acidic amino acid transmembrane transporter activity" evidence=IDA

GO:0015175 "neutral amino acid transmembrane transporter activity" evidence=IDA

GO:0015399 "primary active transmembrane transporter activity" evidence=IDA

TAIR|locus:2168912 AAP6 "amino acid permease 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 900 (321.9 bits), Expect = 3.1e-90, P = 3.1e-90
 Identities = 165/328 (50%), Positives = 224/328 (68%)

Query:     1 MAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNIQSLSVIAAVMSFAYS 60
             +A+++SNC+H+ GH   C  S+T +M+IF  +Q+ILSQ P+FHN+  LS++AAVMSF Y+
Sbjct:   144 VAVKRSNCFHKNGHNVKCATSNTPFMIIFAIIQIILSQIPNFHNLSWLSILAAVMSFCYA 203

Query:    61 FIGFGLGVAKVIGNG-FVMGSFSGVSTTTSI---EKMWLVAQALGDIAFAYPYSLILIEI 116
              IG GL +AK  G G  V  + +GV+    +   EK+W   QA+GDIAFAY YS +LIEI
Sbjct:   204 SIGVGLSIAKAAGGGEHVRTTLTGVTVGIDVSGAEKIWRTFQAIGDIAFAYAYSTVLIEI 263

Query:   117 QDTLKSPPPA-NQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYW 175
             QDTLK+ PP+ N+ MK+AS + + TTT FY+ CG  GYAAFG++ PGN LTGFGFYEP+W
Sbjct:   264 QDTLKAGPPSENKAMKRASLVGVSTTTFFYMLCGCVGYAAFGNDAPGNFLTGFGFYEPFW 323

Query:   176 LIDLANAFIVIHLVGGYQVYSQPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNP 235
             LID AN  I +HL+G YQV+ QPIF   E    +++P+N F+  E+ +  P    F  N 
Sbjct:   324 LIDFANVCIAVHLIGAYQVFCQPIFQFVESQSAKRWPDNKFITGEYKIHVPCCGDFSINF 383

Query:   236 LRLCFRTVYVVSVTAIAMSFPYFNQVLGVIGGVIFWPLTIYFPVEMYFKQMNIEAWTRKW 295
             LRL +RT YVV    +AM FP+FN  LG+IG   FWPLT+YFP+EM+  Q  I  ++  W
Sbjct:   384 LRLVWRTSYVVVTAVVAMIFPFFNDFLGLIGAASFWPLTVYFPIEMHIAQKKIPKFSFTW 443

Query:   296 VMLRVFSYVCFIVSTFGLVGSIQGIISA 323
               L++ S+ CFIVS     GS+QG+I +
Sbjct:   444 TWLKILSWTCFIVSLVAAAGSVQGLIQS 471

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0015172 "acidic amino acid transmembrane transporter activity" evidence=IDA

GO:0015175 "neutral amino acid transmembrane transporter activity" evidence=IDA

GO:0015810 "aspartate transport" evidence=IDA

GO:0015827 "tryptophan transport" evidence=IDA

TAIR|locus:2016600 AAP1 "amino acid permease 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 894 (319.8 bits), Expect = 1.4e-89, P = 1.4e-89
 Identities = 163/326 (50%), Positives = 222/326 (68%)

Query:     1 MAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNIQSLSVIAAVMSFAYS 60
             +A+ KSNC+H +GH A C  S+  YM +FG +Q+ILSQ P+FH +  LS++AAVMSF Y+
Sbjct:   148 VAVGKSNCFHDKGHTADCTISNYPYMAVFGIIQVILSQIPNFHKLSFLSIMAAVMSFTYA 207

Query:    61 FIGFGLGVAKVIGNGFVMGSFSGVST---TTSIEKMWLVAQALGDIAFAYPYSLILIEIQ 117
              IG GL +A V G      S +G +     T+ +K+W   QA+GDIAFAY Y+ +LIEIQ
Sbjct:   208 TIGIGLAIATVAGGKVGKTSMTGTAVGVDVTAAQKIWRSFQAVGDIAFAYAYATVLIEIQ 267

Query:   118 DTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLI 177
             DTL+S P  N+ MK+AS + + TTT FY+ CG  GYAAFG+N PG+ LT FGF+EP+WLI
Sbjct:   268 DTLRSSPAENKAMKRASLVGVSTTTFFYILCGCIGYAAFGNNAPGDFLTDFGFFEPFWLI 327

Query:   178 DLANAFIVIHLVGGYQVYSQPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLR 237
             D ANA I +HL+G YQV++QPIF   EK     +P+N F+ +E+ +  P +  F  +  R
Sbjct:   328 DFANACIAVHLIGAYQVFAQPIFQFVEKKCNRNYPDNKFITSEYSVNVPFLGKFNISLFR 387

Query:   238 LCFRTVYVVSVTAIAMSFPYFNQVLGVIGGVIFWPLTIYFPVEMYFKQMNIEAWTRKWVM 297
             L +RT YVV  T +AM FP+FN +LG+IG   FWPLT+YFPVEM+  Q  I+ ++ +W+ 
Sbjct:   388 LVWRTAYVVITTVVAMIFPFFNAILGLIGAASFWPLTVYFPVEMHIAQTKIKKYSARWIA 447

Query:   298 LRVFSYVCFIVSTFGLVGSIQGIISA 323
             L+   YVC IVS     GSI G+IS+
Sbjct:   448 LKTMCYVCLIVSLLAAAGSIAGLISS 473

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS;IMP

GO:0009624 "response to nematode" evidence=IEP

GO:0043090 "amino acid import" evidence=IMP

GO:0006865 "amino acid transport" evidence=RCA

GO:0015175 "neutral amino acid transmembrane transporter activity" evidence=IGI

GO:0015804 "neutral amino acid transport" evidence=IGI

TAIR|locus:2205876 AAP5 "amino acid permease 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 878 (314.1 bits), Expect = 6.7e-88, P = 6.7e-88
 Identities = 172/332 (51%), Positives = 221/332 (66%)

Query:     1 MAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNIQSLSVIAAVMSFAYS 60
             +AIQ+++C    G    C  +   YM+ FG VQ+I SQ PDF  +  LS++AAVMSFAYS
Sbjct:   139 VAIQRTSCQQMNGPNDPCHVNGNVYMIAFGIVQIIFSQIPDFDQLWWLSIVAAVMSFAYS 198

Query:    61 FIGFGLGVAKVIGNGFVMGSFSGVS--------TTTSIEKMWLVAQALGDIAFAYPYSLI 112
              IG GLGV+KV+ N  + GS +GV+        T TS +K+W   Q+LG+IAFAY YS+I
Sbjct:   199 AIGLGLGVSKVVENKEIKGSLTGVTVGTVTLSGTVTSSQKIWRTFQSLGNIAFAYSYSMI 258

Query:   113 LIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYE 172
             LIEIQDT+KSPP    TM+KA+ +S+  TT+FY+ CG  GYAAFGDN PGNLL   GF  
Sbjct:   259 LIEIQDTVKSPPAEVNTMRKATFVSVAVTTVFYMLCGCVGYAAFGDNAPGNLLAHGGFRN 318

Query:   173 PYWLIDLANAFIVIHLVGGYQVYSQPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPA-- 230
             PYWL+D+AN  IVIHLVG YQVY QP+FA  EK    +FPE+ F+  E  +K  L P   
Sbjct:   319 PYWLLDIANLAIVIHLVGAYQVYCQPLFAFVEKEASRRFPESEFVTKE--IKIQLFPGKP 376

Query:   231 FRWNPLRLCFRTVYVVSVTAIAMSFPYFNQVLGVIGGVIFWPLTIYFPVEMYFKQMNIEA 290
             F  N  RL +RT +V++ T I+M  P+FN V+G++G + FWPLT+YFPVEMY  Q N+  
Sbjct:   377 FNLNLFRLVWRTFFVMTTTLISMLMPFFNDVVGLLGAIGFWPLTVYFPVEMYIAQKNVPR 436

Query:   291 WTRKWVMLRVFSYVCFIVSTFGLVGSIQGIIS 322
             W  KWV L+V S  C  VS     GS+ GI+S
Sbjct:   437 WGTKWVCLQVLSVTCLFVSVAAAAGSVIGIVS 468

GO:0005886 "plasma membrane" evidence=ISM

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS;TAS

GO:0016020 "membrane" evidence=ISS

GO:0015174 "basic amino acid transmembrane transporter activity" evidence=IDA

GO:0015802 "basic amino acid transport" evidence=TAS

GO:0015809 "arginine transport" evidence=IMP

GO:0006865 "amino acid transport" evidence=RCA

UNIPROTKB|Q85V22 ht "Histidine amino acid transporter" [Oryza sativa Indica Group (taxid:39946)]

 Score = 323 (118.8 bits), Expect = 8.4e-41, Sum P(2) = 8.4e-41
 Identities = 79/206 (38%), Positives = 116/206 (56%)

Query:    12 EGHEAACEYSD-TYYMLIFGAVQLILSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAK 70
             EGH   C+    TY+++IF +V  +LSQ P+F++I  +S+ AAVMS +YS I +G  V K
Sbjct:   144 EGH--GCKNIKLTYFIMIFASVHFVLSQLPNFNSISGVSLAAAVMSLSYSTIAWGASVDK 201

Query:    71 VIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPP--PANQ 128
                 G V      +  TTS  K++    ALGD+AFAY    +++EIQ T+ S P  P+ +
Sbjct:   202 ----GKVADVDYHLRATTSTGKVFGFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKK 257

Query:   129 TMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHL 188
              M K   ++ I   + Y      GY AFG++   N+L       P WLI LAN  +VIH+
Sbjct:   258 PMWKGVVVAYIIVALCYFPVALVGYWAFGNHVDDNILITLS--RPKWLIALANMMVVIHV 315

Query:   189 VGGYQVYSQPIFAHFEKWICEK--FP 212
             +G YQ+Y+ P+F   E  + +K  FP
Sbjct:   316 IGSYQIYAMPVFDMIETVLVKKLRFP 341

GO:0009536 "plastid" evidence=IC

TAIR|locus:2008605 AT1G67640 "AT1G67640" [Arabidopsis thaliana (taxid:3702)]

 Score = 297 (109.6 bits), Expect = 8.3e-37, Sum P(2) = 8.3e-37
 Identities = 66/190 (34%), Positives = 109/190 (57%)

Query:    23 TYYMLIFGAVQLILSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFS 82
             TY+++IF ++  +L+  P+F++I  +S+ AAVMS +YS I +   V K +        +S
Sbjct:   154 TYWIMIFASIHFVLAHLPNFNSISIVSLAAAVMSLSYSTIAWATSVKKGVHPNV---DYS 210

Query:    83 GVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPP--PANQTMKKASTMSIIT 140
               ++TTS   ++    ALGD+AFAY    +++EIQ T+ S P  P+   M K   ++ I 
Sbjct:   211 SRASTTS-GNVFNFLNALGDVAFAYAGHNVVLEIQATIPSTPEKPSKIAMWKGVVVAYIV 269

Query:   141 TTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQPIF 200
               I Y       Y  FG++   N+L      +P WLI +ANAF+V+H++G YQ+Y+ P+F
Sbjct:   270 VAICYFPVAFVCYYIFGNSVDDNIL--MTLEKPIWLIAIANAFVVVHVIGSYQIYAMPVF 327

Query:   201 AHFEKWICEK 210
                E ++ +K
Sbjct:   328 DMLETFLVKK 337

GO:0005275 "amine transmembrane transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006865 "amino acid transport" evidence=ISS

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q38967	AAP2_ARATH	No assigned EC number	0.5277	0.9846	0.6511	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00033459001 SubName- Full=Chromosome chr19 scaffold_66, whole genome shotgun sequence; (399 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	326
pfam01490	406	pfam01490, Aa_trans, Transmembrane amino acid tran	3e-57

>gnl|CDD|216528 pfam01490, Aa_trans, Transmembrane amino acid transporter protein

 Score =  190 bits (484), Expect = 3e-57
 Identities = 79/310 (25%), Positives = 134/310 (43%), Gaps = 30/310 (9%)

Query: 18  CEYSDTYYMLIFGAVQLILSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFV 77
           C  S  Y+++IFG + + LS  P+   +  LS++AAV S           +  ++ +   
Sbjct: 122 CHISLVYFIIIFGLIFIPLSFIPNLSALSILSLVAAVSSLY---------IVILVLSVAE 172

Query: 78  MGSFSGVS----TTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKA 133
           +G  +          +  K+  +  A+G I FA+    +L+ IQ+T+KSP    + M K 
Sbjct: 173 LGVLTAQGVGSLGAKTNIKLARLFLAIGIIVFAFEGHAVLLPIQNTMKSPS-KFKAMTKV 231

Query: 134 STMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQ 193
              +II  T+ Y+  G  GY AFG+N  GN+L         WLID+AN  +V+HL+  Y 
Sbjct: 232 LLTAIIIVTVLYILVGLVGYLAFGNNVKGNILLNLPK--SDWLIDIANLLLVLHLLLSYP 289

Query: 194 VYSQPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAM 253
           + + PI    E  +  K       +N                LR+  R+  VV    IA+
Sbjct: 290 LQAFPIRQIVENLLFRKG--ASGKHNPKSKL-----------LRVVIRSGLVVITYLIAI 336

Query: 254 SFPYFNQVLGVIGGVIFWPLTIYFPVEMYFKQMNIEAWTRKWVMLRV-FSYVCFIVSTFG 312
           S P+    L ++G     PLT   P   + K    +  + + +        +C ++    
Sbjct: 337 SVPFLGDFLSLVGATSGAPLTFILPPLFHLKLKKTKKKSLEKLWKPDILDVICIVIGLLL 396

Query: 313 LVGSIQGIIS 322
           +   + G+I 
Sbjct: 397 MAYGVAGLII 406

This transmembrane region is found in many amino acid transporters including UNC-47 and MTR. UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT). UNC-47 is predicted to have 10 transmembrane domains. MTR is a N system amino acid transporter system protein involved in methyltryptophan resistance. Other members of this family include proline transporters and amino acid permeases. Length = 406

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	326
KOG1303	437	consensus Amino acid transporters [Amino acid tran	100.0
KOG1304	449	consensus Amino acid transporters [Amino acid tran	100.0
PTZ00206	467	amino acid transporter; Provisional	100.0
PLN03074	473	auxin influx permease; Provisional	100.0
KOG4303	524	consensus Vesicular inhibitory amino acid transpor	100.0
PF01490	409	Aa_trans: Transmembrane amino acid transporter pro	100.0
KOG1305	411	consensus Amino acid transporter protein [Amino ac	100.0
COG0814	415	SdaC Amino acid permeases [Amino acid transport an	99.71
TIGR00837	381	araaP aromatic amino acid transport protein. aroma	99.1
PF03222	394	Trp_Tyr_perm: Tryptophan/tyrosine permease family;	98.62
PRK15132	403	tyrosine transporter TyrP; Provisional	98.47
PRK10483	414	tryptophan permease; Provisional	98.31
TIGR00814	397	stp serine transporter. The HAAAP family includes	98.26
PRK09664	415	tryptophan permease TnaB; Provisional	98.22
PRK13629	443	threonine/serine transporter TdcC; Provisional	98.22
TIGR03813	474	put_Glu_GABA_T putative glutamate/gamma-aminobutyr	97.86
PRK10746	461	putative transport protein YifK; Provisional	97.84
PRK11021	410	putative transporter; Provisional	97.74
PRK10655	438	potE putrescine transporter; Provisional	97.73
TIGR03810	468	arg_ornith_anti arginine/ornithine antiporter. Mem	97.7
PRK15049	499	L-asparagine permease; Provisional	97.69
PRK10644	445	arginine:agmatin antiporter; Provisional	97.6
PRK10249	458	phenylalanine transporter; Provisional	97.6
TIGR00913	478	2A0310 amino acid permease (yeast).	97.53
PRK10435	435	cadB lysine/cadaverine antiporter; Provisional	97.52
PRK10197	446	gamma-aminobutyrate transporter; Provisional	97.5
PF13520	426	AA_permease_2: Amino acid permease; PDB: 3NCY_A 3G	97.45
TIGR00905	473	2A0302 transporter, basic amino acid/polyamine ant	97.44
PRK11387	471	S-methylmethionine transporter; Provisional	97.44
PRK10580	457	proY putative proline-specific permease; Provision	97.37
PRK11049	469	D-alanine/D-serine/glycine permease; Provisional	97.37
TIGR00906	557	2A0303 cationic amino acid transport permease.	97.35
PRK11357	445	frlA putative fructoselysine transporter; Provisio	97.29
PRK10238	456	aromatic amino acid transporter; Provisional	97.28
TIGR00909	429	2A0306 amino acid transporter.	97.22
TIGR00908	442	2A0305 ethanolamine permease. The three genes used	97.13
TIGR00907	482	2A0304 amino acid permease (GABA permease).	97.1
TIGR00911	501	2A0308 L-type amino acid transporter.	97.05
TIGR00910	507	2A0307_GadC glutamate:gamma-aminobutyrate antiport	97.03
KOG1287	479	consensus Amino acid transporters [Amino acid tran	96.94
TIGR01773	452	GABAperm gamma-aminobutyrate permease. GabP is hig	96.9
TIGR00930	953	2a30 K-Cl cotransporter.	96.87
PRK15238	496	inner membrane transporter YjeM; Provisional	96.79
PRK10836	489	lysine transporter; Provisional	96.63
COG0531	466	PotE Amino acid transporters [Amino acid transport	96.48
TIGR03428	475	ureacarb_perm permease, urea carboxylase system. A	96.07
COG1113	462	AnsP Gamma-aminobutyrate permease and related perm	95.4
PF00324	478	AA_permease: Amino acid permease; InterPro: IPR004	94.82
TIGR00912	359	2A0309 spore germination protein (amino acid perme	93.64
COG0833	541	LysP Amino acid transporters [Amino acid transport	92.14
KOG1286	554	consensus Amino acid transporters [Amino acid tran	91.72
KOG1289	550	consensus Amino acid transporters [Amino acid tran	82.83

>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism]

Probab=100.00  E-value=8.1e-43  Score=334.17  Aligned_cols=278  Identities=41%  Similarity=0.691  Sum_probs=244.5

Q ss_pred             ccCCchhHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCccccccccccCchhhHHHHHHH
Q 020470           19 EYSDTYYMLIFGAVQLILSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQ   98 (326)
Q Consensus        19 ~~~~~~~~ii~~~~~~pl~~~~~l~~L~~~S~~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (326)
                      ..+.+.|+++++.+++|++++||+++++|+|..|+++++.|+.+.++++..++.+.+..+.+....   .+..   ..++
T Consensus       159 ~l~~~~f~iif~~i~~~~s~lp~~~~l~~~S~~~avmS~~~a~~~~~~g~~~g~~~~~~~~~~~~~---~~~~---~~f~  232 (437)
T KOG1303|consen  159 SLDKQYFIIIFGLIVLPLSQLPNFHSLSYLSLVGAVMSTLYAVILIVLGIADGVGFCAPSGGYLDL---GTIP---TVFT  232 (437)
T ss_pred             cccceehhhhHHHHHHHHHHCCCcchhHHHHHHHHHHHHHHHHHHHHHhhccccccCCcccCcccC---CCCc---chhh
Confidence            456789999999999999999999999999999999999999999999998887653322221211   1111   1189


Q ss_pred             HHHHHHHhcCCcchhHHHHhhhCCCCcccccHhhhhhhhhhHHHHHhhhhhchhccccccccccccccccCCCCChHHHH
Q 020470           99 ALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLID  178 (326)
Q Consensus        99 ~~~~~~faf~~h~~~~~i~~~m~~p~p~~~~~~~v~~~s~~~~~~lY~~~g~~GY~~fG~~~~~~il~n~~~~~~~~~~~  178 (326)
                      ++|+++|+|++|.++||||++||+|    ++|+|++..++.+++.+|+.+++.||++|||++++|++.|++  +|.|+.+
T Consensus       233 a~g~iaFaf~gH~v~peIq~tMk~p----~~f~~~~lis~~~~~~~y~~vai~GY~aFG~~~~~~il~s~~--~p~~~~~  306 (437)
T KOG1303|consen  233 ALGIIAFAYGGHAVLPEIQHTMKSP----PKFKKALLISYIIVTFLYFPVAIIGYWAFGDSVPDNILLSLQ--PPTWLIA  306 (437)
T ss_pred             hhhheeeeecCCeeeeehHhhcCCc----hhhhhHHHHHHHHHHHHHHHHHHhhhhhhccccchhhhhccc--CchhHHH
Confidence            9999999999999999999999987    779999999999999999999999999999999999999996  5889999


Q ss_pred             HHHHHHHHHHHHhhhhccccHHHHHHHHHhhhCCCCCCCCCccccCCCCCCcccccchhhhHHHHHHHHHHHHHHHCCCh
Q 020470          179 LANAFIVIHLVGGYQVYSQPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYF  258 (326)
Q Consensus       179 ~~~~~~~l~~~~sypl~~~p~~~~le~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~r~~~r~~~v~~~~~lAi~iP~~  258 (326)
                      .+++++.+|++.+|+++.+|..+.+|+....+.++  +.             ++....|.+.|+.+++.++++|+.+|+|
T Consensus       307 ~ani~i~~h~i~s~~i~a~pl~~~~E~~~~~~~~~--~~-------------~~~~~~R~~~Rt~~v~~~~~vA~~~PfF  371 (437)
T KOG1303|consen  307 LANILIVLHLIGSYQIYAQPLFDVVEKLIGVKHPD--FK-------------KRSLVLRLLVRTFFVAVTTFVALSFPFF  371 (437)
T ss_pred             HHHHHHHHHHhhhhhhhhcchHHHHHHHhccCCcc--cc-------------ccccceeeehhhHHHHHHHHHHHhcccc
Confidence            99999999999999999999999999988754221  10             0234689999999999999999999999


Q ss_pred             HHHHHHHhhhhhhhHHHHhhHHHHHHhcCcchhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHh
Q 020470          259 NQVLGVIGGVIFWPLTIYFPVEMYFKQMNIEAWTRKWVMLRVF-SYVCFIVSTFGLVGSIQGIISA  323 (326)
Q Consensus       259 ~~v~~lvGa~~~~~l~filP~l~yl~~~~~~~~~~~~~~~~~i-~~~G~v~~v~Gt~~si~~ii~~  323 (326)
                      +++++++||+....+++++|+++|++++|++|++++|+.++.. .++|+++++...+.++++++.+
T Consensus       372 g~l~~lvGa~~~~p~t~ilP~~~yl~~~k~~~~s~~~~~~~~~~~~~~~~~~v~~~~~~~~~li~~  437 (437)
T KOG1303|consen  372 GDLLSLVGAFLFWPLTFILPCLMYLLIKKPKRFSPKWLLNWVIILVVGLLLSVLAAVGGVRSLIID  437 (437)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhC
Confidence            9999999999999999999999999999999999999888888 7999999999999999998864

>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism]

Probab=100.00  E-value=1.2e-42  Score=328.55  Aligned_cols=267  Identities=22%  Similarity=0.279  Sum_probs=228.4

Q ss_pred             cCCchhHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCccccccccccCchhhHHHHHHHH
Q 020470           20 YSDTYYMLIFGAVQLILSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQA   99 (326)
Q Consensus        20 ~~~~~~~ii~~~~~~pl~~~~~l~~L~~~S~~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (326)
                      ++.+.|+.+..+++++++++||||+|+++|++|++..++...++....+.+..+    .   ++   .+....+.++...
T Consensus       177 ~s~~~~i~~~~~~~lll~~Ir~Lk~Lsp~Sl~Anv~~~~g~~ii~~y~~~~~~~----~---~~---~~~~~~~~~~~lf  246 (449)
T KOG1304|consen  177 LSVRLYILIQLPPLLLLNLIRNLKILSPFSLFANVFILVGLAIIMYYLVQDLPP----T---SD---LPAVTGWSGLPLF  246 (449)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHhhHHhhHHHHHHHHHHHHHHHHHHHHHHhccCC----c---cc---cccccchhhhHHH
Confidence            789999999999999999999999999999999988766544444333322221    1   11   1122234467789


Q ss_pred             HHHHHHhcCCcchhHHHHhhhCCCCcccccHh---hhhhhhhhHHHHHhhhhhchhccccccccccccccccCCCCChHH
Q 020470          100 LGDIAFAYPYSLILIEIQDTLKSPPPANQTMK---KASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWL  176 (326)
Q Consensus       100 ~~~~~faf~~h~~~~~i~~~m~~p~p~~~~~~---~v~~~s~~~~~~lY~~~g~~GY~~fG~~~~~~il~n~~~~~~~~~  176 (326)
                      +|+.+|||+|++++.|++++||+|    ++|.   +++..++.+++++|..+|++||++|||++++.|+.|+|   ++|+
T Consensus       247 ~GtaifafEGig~VLPlEn~Mk~P----~~F~g~~gVLn~~M~~V~~ly~~~Gf~GYl~fG~~v~~sITLNLP---~~~l  319 (449)
T KOG1304|consen  247 FGTAIFAFEGIGMVLPLENSMKKP----QKFPGPFGVLNLGMGIVTLLYIFLGFFGYLAFGDDVKGSITLNLP---QEIL  319 (449)
T ss_pred             HHHHHHHhccceEEEehhhcccCh----hhcCCccchHHHHHHHHHHHHHHHHHHHHhhccccccceEEecCC---ccHH
Confidence            999999999999999999999988    9999   99999999999999999999999999999999999999   4899


Q ss_pred             HHHHHHHHHHHHHHhhhhccccHHHHHHHHHhhhCCCCCCCCCccccCCCCCCcccccchhhhHHHHHHHHHHHHHHHCC
Q 020470          177 IDLANAFIVIHLVGGYQVYSQPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFP  256 (326)
Q Consensus       177 ~~~~~~~~~l~~~~sypl~~~p~~~~le~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~r~~~r~~~v~~~~~lAi~iP  256 (326)
                      .+.+++++++.++.+||+|.+|..+.+|+.+.+|..++                 |.++....+|+.++++++.+|..+|
T Consensus       320 ~~~Vkl~~ai~I~ls~pLQ~yv~~eIi~~~i~~k~~~~-----------------~~~~~~~~~R~~lVllt~~iA~~iP  382 (449)
T KOG1304|consen  320 SQTVKLLLAIAIFLTYPLQFYVPIEIIEPGIRKKFSEN-----------------RKKLLEYALRVFLVLLTFLIAVAVP  382 (449)
T ss_pred             HHHHHHHHHHHHHHcCchhhhhhHHHHHHhHHHhcCcc-----------------hhHHHHHHHHHHHHHHHHHHHHHCC
Confidence            99999999999999999999999999999887653211                 1247788999999999999999999


Q ss_pred             ChHHHHHHHhhhhhhhHHHHhhHHHHHHhcCcch---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020470          257 YFNQVLGVIGGVIFWPLTIYFPVEMYFKQMNIEA---WTRKWVMLRVFSYVCFIVSTFGLVGSIQGI  320 (326)
Q Consensus       257 ~~~~v~~lvGa~~~~~l~filP~l~yl~~~~~~~---~~~~~~~~~~i~~~G~v~~v~Gt~~si~~i  320 (326)
                      +++++++++||++++.+.+++|++++++..+++.   +.++++.|.+++++|+++++.|||+|++++
T Consensus       383 nL~~fisLVGs~~~s~L~li~P~liel~~~~~~~~~~~~~~~~~ni~l~~~G~~~~v~Gty~si~~i  449 (449)
T KOG1304|consen  383 NLALFISLVGSVSCSLLALIFPPLIELITFYPEGKGRFMWKLIKNIVLIVFGVFGFVYGTYTSIKEI  449 (449)
T ss_pred             cHHhhHHHHHHHHHHHHHHHccHHHHHHHhcccccCceehHHHHHHHHHHHHHHHHHHHHhhhhhcC
Confidence            9999999999999999999999999999865432   334567899999999999999999999864

>PTZ00206 amino acid transporter; Provisional

Probab=100.00  E-value=1.1e-40  Score=325.97  Aligned_cols=277  Identities=16%  Similarity=0.131  Sum_probs=210.4

Q ss_pred             hhHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCccccc--cccccCchhhHHHHHHHHHH
Q 020470           24 YYMLIFGAVQLILSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSF--SGVSTTTSIEKMWLVAQALG  101 (326)
Q Consensus        24 ~~~ii~~~~~~pl~~~~~l~~L~~~S~~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~  101 (326)
                      .+.+++..+++|++++|++++|+|+|.+|.++.+...+++++.....+..++..+.+.  .+.++........+++.++|
T Consensus       184 ~~~~i~~~i~lPLs~~r~i~~L~~~S~i~~~~i~~~vi~ivi~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~alg  263 (467)
T PTZ00206        184 LTSLMWLCFMLPLVIPRHIDSLRYVSTIAVSFMVYLVIVIVVHSCMNGLPENIKNVSVGKDDNAEIILFNSGNRAIEGLG  263 (467)
T ss_pred             eeeehhhhHhhhcccccchHHHHHHHHHHHHHHHHHHhhhhhhhhcccCcccccccccCCCCCCceEEecCchHHHhhhh
Confidence            3455667788999999999999999999976554433333333333322111100000  00000001111236788999


Q ss_pred             HHHHhcCCcchhHHHHhhhCCCCcccccHhhhhhhhhhHHHHHhhhhhchhccccccccccccccccCCCCChHHHHHHH
Q 020470          102 DIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLAN  181 (326)
Q Consensus       102 ~~~faf~~h~~~~~i~~~m~~p~p~~~~~~~v~~~s~~~~~~lY~~~g~~GY~~fG~~~~~~il~n~~~~~~~~~~~~~~  181 (326)
                      +++|||.||.+.+++++|||||  +.++|.+++..++.++.++|..+|++||++|||++++|++.|+++ .++....+++
T Consensus       264 i~~faF~~h~~~~~i~~~M~~~--t~~~~~~v~~~s~~i~~~lY~~~G~~GYl~fG~~v~~~Illn~~p-~~~~~~~v~~  340 (467)
T PTZ00206        264 VFIFAYVFQITAYEVYMDMTNR--SVGKFVLASTIAMGMCFTMYVLTAFFGYMDFGRNVTGSVLLMYDP-VNEPAIMVGF  340 (467)
T ss_pred             HHHhhhhhhhhhHHHHHhhccc--chhHHHHHHHHHHHHHHHHHHHHHHhhhhccccccchHHHHhCCC-CCCchhhHHH
Confidence            9999999999999999999976  449999999999999999999999999999999999999999942 2345567888


Q ss_pred             HHHHHHHHHhhhhccccHHHHHHHHHhhhCCCCCCCCCccccCCCCCCcccccchhhhHHHHHHHHHHHHHHHCCChHHH
Q 020470          182 AFIVIHLVGGYQVYSQPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFNQV  261 (326)
Q Consensus       182 ~~~~l~~~~sypl~~~p~~~~le~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~r~~~r~~~v~~~~~lAi~iP~~~~v  261 (326)
                      +++.+.++.+||++.+|+|+.+++.+..+  .++         .+       +++|...+..++++++++|+.+|+++.+
T Consensus       341 ~~~~~~v~~sypL~~~p~r~~i~~~~~~~--~~~---------~~-------~~~~~~~~~~l~~~~l~iAi~vP~l~~v  402 (467)
T PTZ00206        341 VGVLVKLFVSYALLGMACRNALYDVIGWD--ARK---------VA-------FWKHCIAVVTLSVVMLLCGLFIPKINTV  402 (467)
T ss_pred             HHHHHHHHHhhhhhhhhHHHHHHHHhCCC--ccc---------Cc-------hhhHHHHHHHHHHHHHHHHhccCCHHHh
Confidence            88999999999999999999998876432  100         01       2456556667777889999999999999


Q ss_pred             HHHHhhhhhhhHHHHhhHHHHHHhc---CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020470          262 LGVIGGVIFWPLTIYFPVEMYFKQM---NIEAWTRKWVMLRVFSYVCFIVSTFGLVGSIQGII  321 (326)
Q Consensus       262 ~~lvGa~~~~~l~filP~l~yl~~~---~~~~~~~~~~~~~~i~~~G~v~~v~Gt~~si~~ii  321 (326)
                      ++++||++++.++|++|+++|++..   +++....+|+.+++++++|++.+++|||+|+++.+
T Consensus       403 l~lvGa~~~~~l~fi~P~lf~l~~~~~~~~~~~~~~~~~~~~lli~Gv~~~v~Gt~~si~~~~  465 (467)
T PTZ00206        403 LGFAGSISGGLLGFILPALLFMYSGGFTWQKVGPFYYISTYVVLITGVIAIVFGTGATIWGVT  465 (467)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHhcCCccHHhhchHHHHHHHHHHHHHhheEEecchhHhhHHh
Confidence            9999999999999999999999842   22222234567999999999999999999999876

>PLN03074 auxin influx permease; Provisional

Probab=100.00  E-value=8.5e-39  Score=312.10  Aligned_cols=272  Identities=18%  Similarity=0.199  Sum_probs=216.4

Q ss_pred             cCCchhHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCccccccccccCchhhHHHHHHHH
Q 020470           20 YSDTYYMLIFGAVQLILSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQA   99 (326)
Q Consensus        20 ~~~~~~~ii~~~~~~pl~~~~~l~~L~~~S~~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (326)
                      .+.+.|+++++++++|++++|++|+++++|.+|..+++.+...++..+..++..        ++++ .+.+.++...+.+
T Consensus       168 ~~~~~~~~i~~~v~~~~~~i~sl~~l~~~S~ig~~~tl~~av~i~i~~i~~~~~--------~~~~-~~~~~~~~~~f~~  238 (473)
T PLN03074        168 LDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLLMTTYTAWYMTIAALSHGQV--------EGVK-HSGPTKLVLYFTG  238 (473)
T ss_pred             cCCCeEEeehHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC--------CCCC-CCCchhHHHHHHH
Confidence            578999999999999999999999999999999776554322222222222211        1111 0112345567788


Q ss_pred             HHHHHHhcCCcchhHHHHhhhCCCCcccccHhhhhhhhhhHHHHHhhhhhchhccccccccc--cccccccCCCCChHHH
Q 020470          100 LGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTP--GNLLTGFGFYEPYWLI  177 (326)
Q Consensus       100 ~~~~~faf~~h~~~~~i~~~m~~p~p~~~~~~~v~~~s~~~~~~lY~~~g~~GY~~fG~~~~--~~il~n~~~~~~~~~~  177 (326)
                      +++++|+|+||.++|+|++|||||    ++|+++...++..++.+|..+|+.||++|||+++  ++.+.|+|  ++. ..
T Consensus       239 ~~~i~faf~g~~v~~~I~~~M~~P----~~F~~~~~l~~~~v~~~y~~~~~~gY~~fG~~~~~~s~~l~~lp--~~~-~~  311 (473)
T PLN03074        239 ATNILYTFGGHAVTVEIMHAMWKP----QKFKYIYLAATLYVLTLTLPSAAAVYWAFGDELLTHSNAFSLLP--RSG-WR  311 (473)
T ss_pred             HHHHHHHhcccccHHHHHHhccCh----hcccchHHHHHHHHHHHHHHHHHeeeeeechhhhhchhHHhcCC--Cch-HH
Confidence            889999999999999999999988    8899999999999999999999999999999976  46687888  233 36


Q ss_pred             HHHHHHHHHHHHHhhhhccccHHHHHHHHHhhhCCCCCCCCCccccCCCCCCcccccchhhhHHHHHHHHHHHHHHHCCC
Q 020470          178 DLANAFIVIHLVGGYQVYSQPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPY  257 (326)
Q Consensus       178 ~~~~~~~~l~~~~sypl~~~p~~~~le~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~r~~~r~~~v~~~~~lAi~iP~  257 (326)
                      +++++++.++++.+|+++.+|..+..|+....+  +.                 +..+.|.++|+.++++++++|+.+|+
T Consensus       312 ~~~~~~~~i~~~~sy~l~~~p~~~~~e~~~~~~--~~-----------------k~~~~r~~~R~~lv~~~~~iA~~IP~  372 (473)
T PLN03074        312 DAAVILMLIHQFITFGFACTPLYFVWEKAIGVH--DT-----------------KSICLRALARLPVVVPIWFLAIIFPF  372 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHHhccc--cc-----------------ccHHHHHHHHHHHHHHHHHHHHHccc
Confidence            788999999999999999999999888865421  10                 12467899999999999999999999


Q ss_pred             hHHHHHHHhhhhhhhHHHHhhHHHHHHhcCcc-------------hhHHH--HHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q 020470          258 FNQVLGVIGGVIFWPLTIYFPVEMYFKQMNIE-------------AWTRK--WVMLRVFSYV-CFIVSTFGLVGSIQGII  321 (326)
Q Consensus       258 ~~~v~~lvGa~~~~~l~filP~l~yl~~~~~~-------------~~~~~--~~~~~~i~~~-G~v~~v~Gt~~si~~ii  321 (326)
                      |+++++|+||++++.++|++|+++|++.++++             .+.++  .++|++++++ |+++++.|||+|+++|+
T Consensus       373 fg~llsLvGs~~~s~l~~i~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~iiv~~~~~g~~~G~~asi~~ii  452 (473)
T PLN03074        373 FGPINSAVGALLVSFTVYIIPSLAHMLTYRSASARQNAAEKPPFFLPSWTGMYVVNAFVVVWVLVVGFGFGGWASMTNFV  452 (473)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhcccCCcccCCccceehhhhhHHHHhhhhHhhccchHHHHHHHH
Confidence            99999999999999999999999999854321             11111  2678888876 55556899999999999


Q ss_pred             HhhcC
Q 020470          322 SAKLS  326 (326)
Q Consensus       322 ~~~~~  326 (326)
                      +++++
T Consensus       453 ~~~~~  457 (473)
T PLN03074        453 RQIDT  457 (473)
T ss_pred             Hhhhh
Confidence            99875

>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms]

Probab=100.00  E-value=5.3e-38  Score=282.51  Aligned_cols=285  Identities=19%  Similarity=0.223  Sum_probs=242.0

Q ss_pred             cCCchhHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCccccccccccCchhhHHHHHHHH
Q 020470           20 YSDTYYMLIFGAVQLILSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQA   99 (326)
Q Consensus        20 ~~~~~~~ii~~~~~~pl~~~~~l~~L~~~S~~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (326)
                      ++++.|+++.+..++|.+|+|+||.++-+|++++++.++..++++.+|+....+..     ...   .+...+..++..+
T Consensus       236 vd~~sWm~i~~a~LLpc~FLk~Lk~VS~lSf~ct~sH~viN~i~v~YCLs~~~dW~-----wsk---v~Fsidi~~fPis  307 (524)
T KOG4303|consen  236 VDKASWMMITSASLLPCSFLKDLKIVSRLSFFCTISHLVINLIMVLYCLSFVSDWS-----WSK---VTFSIDINTFPIS  307 (524)
T ss_pred             ccccchhhhhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-----cee---EEEEEEcccCceE
Confidence            78999999999999999999999999999999999999998888888886554332     121   1222333355578


Q ss_pred             HHHHHHhcCCcchhHHHHhhhCCCCcccccHhhhhhhhhhHHHHHhhhhhchhccccccccccccccccCCCCChHHHHH
Q 020470          100 LGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDL  179 (326)
Q Consensus       100 ~~~~~faf~~h~~~~~i~~~m~~p~p~~~~~~~v~~~s~~~~~~lY~~~g~~GY~~fG~~~~~~il~n~~~~~~~~~~~~  179 (326)
                      +|+++|+|+.|..+|+++.+|++|    .+|...+.++.+...++-..+|..||++||+++|..|.+|+|   +.....+
T Consensus       308 vG~iVFsYTSqIFLP~LEGNM~~p----s~Fn~Ml~WsHIAAaVfK~~Fg~~~fLTf~~~TqevItnnLp---~qsfk~~  380 (524)
T KOG4303|consen  308 VGMIVFSYTSQIFLPNLEGNMKNP----SQFNVMLKWSHIAAAVFKVVFGMLGFLTFGELTQEVITNNLP---NQSFKIL  380 (524)
T ss_pred             EEEEEEeeeceeeccccccccCCh----hHheeeeehHHHHHHHHHHHHHHheeeeechhhHHHHhcCCC---ccchhhh
Confidence            999999999999999999999987    788888999999999999999999999999999999999998   4456788


Q ss_pred             HHHHHHHHHHHhhhhccccHHHHHHHHHhhhCCCCCCCCCccccCCCCCCcccccchhhhHHHHHHHHHHHHHHHCCChH
Q 020470          180 ANAFIVIHLVGGYQVYSQPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFN  259 (326)
Q Consensus       180 ~~~~~~l~~~~sypl~~~p~~~~le~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~r~~~r~~~v~~~~~lAi~iP~~~  259 (326)
                      +++++++..+.|||+-.+...+.+|+.++...|+..+. .-++      |+.+.+-|.+..|+.+++++.++|+.+|+|.
T Consensus       381 VN~fLV~KALLSYPLPfyAAvelLe~nlF~g~p~t~Fp-scys------~Dg~Lk~WgltlR~~lvvfTllmAi~vPhf~  453 (524)
T KOG4303|consen  381 VNLFLVVKALLSYPLPFYAAVELLENNLFLGYPQTPFP-SCYS------PDGSLKEWGLTLRIILVVFTLLMAISVPHFV  453 (524)
T ss_pred             hhHHHHHHHHHcCCchHHHHHHHHHHhhhcCCCCCCCc-eeeC------CCcchhhheeeeeeHHHHHHHHHHHHhHHHH
Confidence            99999999999999988888899998777644544331 1111      3344456678899999999999999999999


Q ss_pred             HHHHHHhhhhhhhHHHHhhHHHHHHhcCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 020470          260 QVLGVIGGVIFWPLTIYFPVEMYFKQMNIEAWTRKWVMLRVFSYVCFIVSTFGLVGSIQGIISAKLS  326 (326)
Q Consensus       260 ~v~~lvGa~~~~~l~filP~l~yl~~~~~~~~~~~~~~~~~i~~~G~v~~v~Gt~~si~~ii~~~~~  326 (326)
                      .+|+++|++.++.++|+.|++||++++.+..-+.++..+..++++|...+|.|.|.|..++|+++++
T Consensus       454 ~LMGl~Gs~TGtmLsFiwP~lFHl~ik~~~L~~~e~~fD~~Ii~~G~~~~vsG~y~S~~~Li~A~~~  520 (524)
T KOG4303|consen  454 ELMGLVGSITGTMLSFIWPALFHLYIKEKTLNNFEKRFDQGIIIMGCSVCVSGVYFSSMELIRAINS  520 (524)
T ss_pred             HHHHhhcccccccHHHHHHHHHHHHHHHHhhhhHHHhhheeEEEEeeeEEEEeEehhhHHHHHHHhc
Confidence            9999999999999999999999999876654445667899999999999999999999999999875

>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR)

Probab=100.00  E-value=3.6e-37  Score=296.51  Aligned_cols=283  Identities=24%  Similarity=0.318  Sum_probs=219.4

Q ss_pred             ccCCchhHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCccccccccccCchhhHHHHHHH
Q 020470           19 EYSDTYYMLIFGAVQLILSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQ   98 (326)
Q Consensus        19 ~~~~~~~~ii~~~~~~pl~~~~~l~~L~~~S~~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (326)
                      ..++..|.++.+++++|++++|++++|++.|.+|.++.+.+..+.+.........+ +.+....+   .....+.++.+.
T Consensus       121 ~~~~~~~~~i~~~i~~pls~~~~l~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~~~  196 (409)
T PF01490_consen  121 FISRYVWIIIFALIVLPLSFLKNLKSLRYLSILGLFSIFYFIVIVVIYIISYGPGE-PSGVPSPP---VWPFISFSGFFS  196 (409)
T ss_pred             cccccccccccccccccccccchhhHHHHHhhhhhhccceeeeeecceeeeeeccc-cccccccc---ccccchhhHHHH
Confidence            36778899999999999999999999999999998765432222222222222111 11111010   112345678999


Q ss_pred             HHHHHHHhcCCcchhHHHHhhhCCCCccc-ccHhhhhhhhhhHHHHHhhhhhchhccccccccccccccccCCCCChHHH
Q 020470           99 ALGDIAFAYPYSLILIEIQDTLKSPPPAN-QTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLI  177 (326)
Q Consensus        99 ~~~~~~faf~~h~~~~~i~~~m~~p~p~~-~~~~~v~~~s~~~~~~lY~~~g~~GY~~fG~~~~~~il~n~~~~~~~~~~  177 (326)
                      ++|+++|||.||.++|++++|||+|  ++ ++++++...++.+++++|..+|++||++|||++++|+++|+|  ++++..
T Consensus       197 ~~~i~~faf~~~~~~~~i~~~m~~~--~~~~~~~~~~~~s~~~~~~~y~~~g~~gy~~fg~~~~~~il~n~~--~~~~~~  272 (409)
T PF01490_consen  197 AFGIIIFAFSCHPNLPPIQSEMKDP--SKFKKMKKVLSISMIICFIIYLLFGIFGYLAFGDSVQGNILLNLP--NDDVLI  272 (409)
T ss_pred             hhhhhhhhhhcccccceeeeeccCC--ccccccceeeeehhhhhhHHhhhhhhcccceeeeeecchhhhcCC--Cccccc
Confidence            9999999999999999999999976  33 456699999999999999999999999999999999999999  344678


Q ss_pred             HHHHHHHHHHHHHhhhhccccHHHHHHHHHhhhCCCCCCCCCccccCCCCCCcccccchhhhHHHHHHHHHHHHHHHCCC
Q 020470          178 DLANAFIVIHLVGGYQVYSQPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPY  257 (326)
Q Consensus       178 ~~~~~~~~l~~~~sypl~~~p~~~~le~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~r~~~r~~~v~~~~~lAi~iP~  257 (326)
                      .++++++.++++.+||++.+|.++.+|+.+..+.+..+..++    + +    .+.+++|..+|+.++++++++|+.+|+
T Consensus       273 ~i~~~~~~i~~~~s~pl~~~p~~~~l~~~~~~~~~~~~~~~~----~-~----~~~~~~~~~~~~~~~~~~~~iA~~vp~  343 (409)
T PF01490_consen  273 IIARILLVISLLLSYPLQLFPARNSLENLLFKRAASSRDSPK----N-T----PSSRWLRYLIRIILVLLSFLIAIFVPN  343 (409)
T ss_pred             ccccccchhhhhhccccccchhHhhhhhheeccccccccccc----c-c----cccceeeeeeecchhhhhhhhhhhccc
Confidence            899999999999999999999999999988653000000000    0 0    122477899999999999999999999


Q ss_pred             hHHHHHHHhhhhhhhHHHHhhHHHHHHhcCcchhHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
Q 020470          258 FNQVLGVIGGVIFWPLTIYFPVEMYFKQMNIEAWTRKW-----VMLRVFSYVCFIVSTFGLVGSIQ  318 (326)
Q Consensus       258 ~~~v~~lvGa~~~~~l~filP~l~yl~~~~~~~~~~~~-----~~~~~i~~~G~v~~v~Gt~~si~  318 (326)
                      ++++++++||++++.++|++|+++|+|.+++++.+.++     ..+++.+++|++.++.|||.+++
T Consensus       344 ~~~i~~l~Ga~~~~~i~fi~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~  409 (409)
T PF01490_consen  344 FGDIISLVGALFGSFISFILPALLYLKLFKRKRNSFGWWWILSILNWIIIVFGVVLMVFGTYQSIQ  409 (409)
T ss_pred             hhhhhcccchHHHHhHHHHHHHHHHHHhhcccccccceeehhhccceEEEEEeeehhHHhHHHHcC
Confidence            99999999999999999999999999987665432222     23567778999999999998863

UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.

>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism]

Probab=100.00  E-value=9.5e-32  Score=256.57  Aligned_cols=274  Identities=16%  Similarity=0.227  Sum_probs=215.8

Q ss_pred             hHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCccccccccccCchhhHHHHHHHHHHHHH
Q 020470           25 YMLIFGAVQLILSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIA  104 (326)
Q Consensus        25 ~~ii~~~~~~pl~~~~~l~~L~~~S~~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (326)
                      |.+....+..||++.|++++|++.|.++.........++++....... ..+ +.+.    ..++...+++.+.++|+++
T Consensus       131 ill~~~~~i~pLsl~k~l~~Lk~tS~~s~~~~~~fv~~vv~~~~~~~~-~~~-~~~~----~~~~~~~~~~~~~~~pi~~  204 (411)
T KOG1305|consen  131 ILLVLLFIILPLSLLKNLDSLKYTSALSLASVVYFVVLVVYKYFQGPC-ALG-RLSY----LVPNLSSFSSLFYALPIFV  204 (411)
T ss_pred             eehHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccc-ccC-Cccc----ccCCcchhhhhhhhhhhhh
Confidence            677788888999999999999999999876655443333333222111 000 1100    0112222368889999999


Q ss_pred             HhcCCcchhHHHHhhhCCCCcccccHhhhhhhhhhHHHHHhhhhhchhccccccccccccccccCCCCCh----HHHHHH
Q 020470          105 FAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPY----WLIDLA  180 (326)
Q Consensus       105 faf~~h~~~~~i~~~m~~p~p~~~~~~~v~~~s~~~~~~lY~~~g~~GY~~fG~~~~~~il~n~~~~~~~----~~~~~~  180 (326)
                      |||.||.++.++++|||||  +++++.++...+...++.+|..+|.+||+.|||++++|++.++|...+.    +....+
T Consensus       205 faf~Ch~n~~~i~~El~~~--s~~~i~~v~~~~~~~~~~iy~~~g~~GYL~Fg~~v~~n~l~~~~~~~~~~l~~~~~~~v  282 (411)
T KOG1305|consen  205 FAFTCHSNVFPIYNELKDR--SVKKIQRVSNIAIILATLIYLLTGLFGYLTFGDLVKGNLLHNYDSILNNLLRSFPLLCV  282 (411)
T ss_pred             eeeeccccceeeeeeeeCc--hHHHHHHHHHHHHHHHHHHHHHHHHhhhheecccchHHHHhcCCcccchhHhhhhHHHH
Confidence            9999999999999999966  7799999999999999999999999999999999999999999853222    135788


Q ss_pred             HHHHHHHHHHhhhhccccHHHHHHHHHhhhCCCCCCCCCccccCCCCCCcccccchhhhHHHHHHHHHHHHHHHCCChHH
Q 020470          181 NAFIVIHLVGGYQVYSQPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFNQ  260 (326)
Q Consensus       181 ~~~~~l~~~~sypl~~~p~~~~le~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~r~~~r~~~v~~~~~lAi~iP~~~~  260 (326)
                      +..+.++.+..+|+..+|+|..++......+++.+.         +      .+.++.+++..++.++.+.|+.+|++++
T Consensus       283 r~~~~~~~~l~~pi~~fPlr~~l~~~~~~~~~~~~~---------~------s~~r~~~itl~ll~~~~l~ai~~p~i~~  347 (411)
T KOG1305|consen  283 RLRIAVAVLLTFPIVLFPLRMNLDELLFPYQPGLTS---------F------SGKRHFVITLLLLIFTFLLAIFVPSIGT  347 (411)
T ss_pred             HHHHHHHHHHHHHHHhchHHHHHHHHhcccCCCCCC---------c------cceehhHHHHHHHHHHHHHHHHhccHHH
Confidence            999999999999999999999998887765433110         1      1245577788888999999999999999


Q ss_pred             HHHHHhhhhhhhHHHHhhHHHHHHhcCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 020470          261 VLGVIGGVIFWPLTIYFPVEMYFKQMNIEAWTRKWVMLRVFSYVCFIVSTFGLVGSIQGIISA  323 (326)
Q Consensus       261 v~~lvGa~~~~~l~filP~l~yl~~~~~~~~~~~~~~~~~i~~~G~v~~v~Gt~~si~~ii~~  323 (326)
                      +.+++||++++.++|++|+++|++..|.  .+++....+...++|+..++.|+..-+.++..+
T Consensus       348 i~~~vGAT~~~~i~FI~P~~~yl~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~  408 (411)
T KOG1305|consen  348 IFGFVGATSSTSISFILPALYYLKASKK--KSREPLGALIFLILGVLLSIIGVAVMIYDLLAK  408 (411)
T ss_pred             HHHHhhhhhhhhhHHHHHHHhhheeecc--ccccchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999998765  223345567777899999999999988887754

>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]

Probab=99.71  E-value=7.9e-16  Score=148.56  Aligned_cols=270  Identities=14%  Similarity=0.166  Sum_probs=177.6

Q ss_pred             cCCchhHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCccccccccccCchhhHHHHHHHH
Q 020470           20 YSDTYYMLIFGAVQLILSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQA   99 (326)
Q Consensus        20 ~~~~~~~ii~~~~~~pl~~~~~l~~L~~~S~~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (326)
                      .+++.+.+++..++.++++.++...+++.|.+...+....+...    .+.....+.  ......+... ...+..+..+
T Consensus       126 ~~r~~~~lif~~~~~~l~~~~~~~~lk~ts~l~~~~v~~~~~l~----~~~~~~~~~--~~l~~~~~~~-~~~~~~~~~~  198 (415)
T COG0814         126 LPRKLGSLIFALVLAFLSWLGTLAVLKITSLLVFGKVIYLVLLV----VYLIPHWNP--ANLFALPSAS-QSFWKYLLLA  198 (415)
T ss_pred             cchHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHH----HHHhcccCH--HHHhcccccc-hhhHHHHHHH
Confidence            56788889999999999999999999999998765543322221    222221111  0011100000 2344567789


Q ss_pred             HHHHHHhcCCcchhHHHHhhhCCCCcccccHhhhhhhhhhHHHHHhhhhhchhccccccccccccccccCCCCChHHHHH
Q 020470          100 LGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDL  179 (326)
Q Consensus       100 ~~~~~faf~~h~~~~~i~~~m~~p~p~~~~~~~v~~~s~~~~~~lY~~~g~~GY~~fG~~~~~~il~n~~~~~~~~~~~~  179 (326)
                      +|+++|||+||+++|++++|||++  ++++.+|+...+..+..++|..++.++|..+|+.+.++++++.++  ++... .
T Consensus       199 ipv~vfsF~~h~~i~si~~~~~~~--~~~~~~k~~~~~~~~~~vlyi~~~~~~~~~~~~~~~~~il~~~~~--~~~~l-~  273 (415)
T COG0814         199 IPVFVFSFGFHGNIPSLVNYMRKN--SKKAVRKAILIGSLIALVLYILVGFFVFGCFGSLVFGNILAAKEQ--NISLL-S  273 (415)
T ss_pred             hhHHHhhhhCCccchHHHHHhccc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHccCc--hHHHH-H
Confidence            999999999999999999999965  445599999999999999999999999999999999999999973  22211 1


Q ss_pred             HHHHHHHHHHHhhhhcccc--------------HHHHHHHHHhhhCCCCCCCCCccccCCCCCCcccccchh--hhHHHH
Q 020470          180 ANAFIVIHLVGGYQVYSQP--------------IFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLR--LCFRTV  243 (326)
Q Consensus       180 ~~~~~~l~~~~sypl~~~p--------------~~~~le~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~r--~~~r~~  243 (326)
                      +..........+++.+.++              .+|.+++..+.  .+++          +   .++.++.+  ......
T Consensus       274 ~~~~~~~~~~~~~~~~~f~~~Ai~tSFlgv~lg~~~~~~~~~~~--~~~~----------~---~r~~~~~~~~~~~~i~  338 (415)
T COG0814         274 ALAGVINSPILSIALNIFALFAIATSFLGVYLGLFEGLADLFKK--SNSK----------P---GRKKTGLLTFLPPLIF  338 (415)
T ss_pred             HHHHhhcchHHHHHHHHHHHHHHHHHHhCchhhHHHhhhHHHHh--ccCc----------c---cchhhhhhhHHHHHHH
Confidence            1112222222333333333              33444444432  0100          0   01111222  223445


Q ss_pred             HHHHHHHHHHHCCChHHHHHHHhhhhhhhHHHHhhHHHHHHhcCcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020470          244 YVVSVTAIAMSFPYFNQVLGVIGGVIFWPLTIYFPVEMYFKQMNIEAWTRKWVMLRVFSYVCFIVSTFGLVGS  316 (326)
Q Consensus       244 ~v~~~~~lAi~iP~~~~v~~lvGa~~~~~l~filP~l~yl~~~~~~~~~~~~~~~~~i~~~G~v~~v~Gt~~s  316 (326)
                      .+......+...|..+.+++.+|+.....+.++.|...+.|....+.+..++..+.+++++|+..++.-.+..
T Consensus       339 ~l~~~~~~~~~~~~~~~~~~~iga~i~~~ll~~~p~~~~~~~~~~~~~~g~~~~~~~v~~~Gi~~~~~~~~~~  411 (415)
T COG0814         339 ALLYPWGFAIALGYAGGLIATIGAPIIPALLFIKPRKLIYKLPALKVYGGNFLLLLLVLLFGILVILSPFLAT  411 (415)
T ss_pred             HHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeecCCCchhHHHHHHHHHHHHHHHHHHH
Confidence            5567778899999999999999999999999999999887754332222111356777788888877666544

>TIGR00837 araaP aromatic amino acid transport protein

Probab=99.10  E-value=3.6e-09  Score=101.27  Aligned_cols=231  Identities=10%  Similarity=0.016  Sum_probs=143.9

Q ss_pred             chhHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCccccccccccCchhhHHHHHHHHHHH
Q 020470           23 TYYMLIFGAVQLILSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGD  102 (326)
Q Consensus        23 ~~~~ii~~~~~~pl~~~~~l~~L~~~S~~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (326)
                      +.+.+++.+++.++.. +..|..+.++.+.....+....+.++.+..+.   +.  .......  .....+.+...+++.
T Consensus       115 ~~~~~~~~~v~~~l~~-~G~~~~~~v~~i~~~~~l~~l~~~ii~~~~~~---~~--~~~~~~~--~~~~~~~~~~~a~~~  186 (381)
T TIGR00837       115 RAIVLIFTVLFGSFVW-LSTSAVDRITRVLIFGKIIAFALVFSGLLPHV---KG--DLLLDVA--LDTSYWPYILSALPV  186 (381)
T ss_pred             HHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHHHHHHHHHHHHHhhc---cH--HHHhcCc--cccccHHHHHHHHHH
Confidence            3344444445555544 45677777776655444333222222222211   00  0000000  001123366788999


Q ss_pred             HHHhcCCcchhHHHHhhhCCCCcccccHhhhhhhhhhHHHHHhhhhhchhcccccccccc-------c------cccccC
Q 020470          103 IAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPG-------N------LLTGFG  169 (326)
Q Consensus       103 ~~faf~~h~~~~~i~~~m~~p~p~~~~~~~v~~~s~~~~~~lY~~~g~~GY~~fG~~~~~-------~------il~n~~  169 (326)
                      ..++|++|.+++++.+|+++|   +|+.+|+...+..+++++|..+........+.+.-.       +      .+++.-
T Consensus       187 ~~~~fg~~~~i~~~~~~~~~~---~k~i~raii~g~~i~~~lY~l~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~~~  263 (381)
T TIGR00837       187 CLTSFGFHGNVPSLYKYYDGN---VKKVKKSILIGSAIALVLYILWQLATMGNLPRSEFLPIIAKGGNLDGLVNALQGVL  263 (381)
T ss_pred             HHHHHHcccccHHHHHHhccC---HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHcCCChHHHHHHHHHhc
Confidence            999999999999999999853   389999999999999999998755544444332211       1      111110


Q ss_pred             CCCChHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHhhhCCCCCCCCCccccCCCCCCcccccchhhhHHHHHHHHHH
Q 020470          170 FYEPYWLIDLANAFIVIHLVGGYQVYSQPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVT  249 (326)
Q Consensus       170 ~~~~~~~~~~~~~~~~l~~~~sypl~~~p~~~~le~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~r~~~r~~~v~~~~  249 (326)
                        .+.+...+..++..+.+.+++.-.....+|.+.+.++++. +                 +   ..|.....+..+...
T Consensus       264 --~~~~~~~~v~~~~~~al~tS~~g~~l~~~d~l~~~~~~~~-~-----------------~---~~~~~~~~~~~~~pl  320 (381)
T TIGR00837       264 --KSSAIELALELFSNFALASSFLGVTLGLFDYLADLFKFDD-S-----------------K---KGRFKTGLLTFLPPL  320 (381)
T ss_pred             --cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-c-----------------c---CCCchhhhhhHHhHH
Confidence              1334455666677777788887777777787776665421 0                 0   113333455567788


Q ss_pred             HHHHHCCChH-HHHHHHhhhhhhhHHHHhhHHHHHHhcCc
Q 020470          250 AIAMSFPYFN-QVLGVIGGVIFWPLTIYFPVEMYFKQMNI  288 (326)
Q Consensus       250 ~lAi~iP~~~-~v~~lvGa~~~~~l~filP~l~yl~~~~~  288 (326)
                      ++|...|+.. ..++..| +.++.+.+++|++++++.||+
T Consensus       321 ~~a~~~p~~~~~~l~~~G-~~~~~~~~~~p~l~~~~~r~~  359 (381)
T TIGR00837       321 VFALFYPEGFLYAIGYAG-LAATIWAVIIPALLAWKARKK  359 (381)
T ss_pred             HHHHHhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhc
Confidence            8999999987 8999999 888999999999999987654

aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.

>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell

Probab=98.62  E-value=4.7e-06  Score=80.29  Aligned_cols=172  Identities=19%  Similarity=0.256  Sum_probs=116.2

Q ss_pred             hHHHHHHHHHHHHHHhcCCcchhHHHHhhhCCCCcccccHhhhhhhhhhHHHHHhhhh--hchhcc---------ccccc
Q 020470           91 EKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFC--GGFGYA---------AFGDN  159 (326)
Q Consensus        91 ~~~~~~~~~~~~~~faf~~h~~~~~i~~~m~~p~p~~~~~~~v~~~s~~~~~~lY~~~--g~~GY~---------~fG~~  159 (326)
                      .++...+.++|+..+||+.|..+|++.+.+++ +  .++.+|++..+..+..++|+..  .+.|=+         .-|++
T Consensus       181 ~~~~~~~~~lPv~~~Sf~f~~ivPsl~~~~~~-d--~~k~~~ai~~Gs~i~lv~yl~w~~~~lg~l~~~~~~~~~~~~~~  257 (394)
T PF03222_consen  181 SDWSYILPALPVLVFSFGFHNIVPSLVKYLGG-D--PKKIRKAIIIGSLIPLVMYLLWVFSILGSLPREQFAEAIAQGGN  257 (394)
T ss_pred             ccHHHHHHHHHHHHHHHHHHhhhHHHHHHhCc-c--HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCC
Confidence            34446678999999999999999999999984 2  2789999999888888888774  333311         11111


Q ss_pred             ccc--ccccccCCCCChHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHhhhCCCCCCCCCccccCCCCCCcccccchh
Q 020470          160 TPG--NLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLR  237 (326)
Q Consensus       160 ~~~--~il~n~~~~~~~~~~~~~~~~~~l~~~~sypl~~~p~~~~le~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~r  237 (326)
                      ..+  ..+.+..  ++.+...++.++-.+.+.+||-=...-.+|.+++.++.  +++                   ...|
T Consensus       258 ~~~~~~~~~~~~--~s~~i~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~~k~--~~~-------------------~~~r  314 (394)
T PF03222_consen  258 VSALVSALANVS--GSPWISILGSIFAFFAIATSFLGVYLGLFDFLADLFKL--KNN-------------------SSGR  314 (394)
T ss_pred             hHHHHHHHHhhc--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--Ccc-------------------ccch
Confidence            111  1222222  23444555667777777777754555677877776653  111                   1223


Q ss_pred             hhHHHHHHHHHHHHHHHCCC-hHHHHHHHhhhhhhhHHHHhhHHHHHHhcCcc
Q 020470          238 LCFRTVYVVSVTAIAMSFPY-FNQVLGVIGGVIFWPLTIYFPVEMYFKQMNIE  289 (326)
Q Consensus       238 ~~~r~~~v~~~~~lAi~iP~-~~~v~~lvGa~~~~~l~filP~l~yl~~~~~~  289 (326)
                      .....+..+..+++|...|+ |-..+++.| ...+.+..++|+++.+|.||++
T Consensus       315 ~~~~~ltf~ppl~~a~~~p~~F~~al~~aG-~~~~il~~ilP~~m~~~~r~~~  366 (394)
T PF03222_consen  315 LKTWLLTFLPPLIFALLFPNGFLIALGYAG-IGIAILLGILPALMVWKARKRK  366 (394)
T ss_pred             HHHHHHHHHhHHHHHHHCcHHHHHHHHhhc-HHHHHHHHHHHHHHHHHHHccc
Confidence            33334455667888999986 678899999 8889999999999999976543

A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.

>PRK15132 tyrosine transporter TyrP; Provisional

Probab=98.47  E-value=1.1e-05  Score=77.81  Aligned_cols=192  Identities=12%  Similarity=0.116  Sum_probs=124.4

Q ss_pred             HHHHHHHHHHhcCCcchhHHHHhhhCCCCcccccHhhhhhhhhhHHHHHhhhhhchhccccccc-----ccc-----ccc
Q 020470           96 VAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDN-----TPG-----NLL  165 (326)
Q Consensus        96 ~~~~~~~~~faf~~h~~~~~i~~~m~~p~p~~~~~~~v~~~s~~~~~~lY~~~g~~GY~~fG~~-----~~~-----~il  165 (326)
                      +..++|++.+||+.|..+|++.+.+++ ++  ++.+|+...+..+..++|+..=..-...-+.+     .++     +++
T Consensus       183 ~~~~iPvl~~SFgfh~iIpsl~~y~~~-~~--~~~~k~i~~Gs~i~li~yl~W~~~~lg~l~~~~~~~~~~~~~~~~~~l  259 (403)
T PRK15132        183 ALSAIPVIFTSFGFHGSVPSIVSYMGG-NI--RKLRWVFIIGSAIPLVAYIFWQLATLGSIDSTTFMGLLANHAGLNGLL  259 (403)
T ss_pred             HHHHHHHHHHHhhCCcccHHHHHHhCc-CH--HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHccCchHHHH
Confidence            667999999999999999999999874 23  78999999999898888877422222222211     111     223


Q ss_pred             cccCC-CCChHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHhhhCCCCCCCCCccccCCCCCCcccccchhhhHHHHH
Q 020470          166 TGFGF-YEPYWLIDLANAFIVIHLVGGYQVYSQPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVY  244 (326)
Q Consensus       166 ~n~~~-~~~~~~~~~~~~~~~l~~~~sypl~~~p~~~~le~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~r~~~r~~~  244 (326)
                      ..+.. .+..+...++.++..+.+.+||-=.....+|.+.+.++.+  ++                   ...|.....+.
T Consensus       260 ~~l~~~~~~~~~~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~~~~~--~~-------------------~~~r~~~~~l~  318 (403)
T PRK15132        260 QALREVVASPHVELAVHLFADLALATSFLGVALGLFDYLADLFQRR--NT-------------------VGGRLQTGLIT  318 (403)
T ss_pred             HHHHHHccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC--cc-------------------ccCCchhehhh
Confidence            33321 0234555566666666666776544456677777766432  10                   01244444566


Q ss_pred             HHHHHHHHHHCCC-hHHHHHHHhhhhhhhHHHHhhHHHHHHhcCcc---hhH--HHHHHHHHHHHHHHHHHHHH
Q 020470          245 VVSVTAIAMSFPY-FNQVLGVIGGVIFWPLTIYFPVEMYFKQMNIE---AWT--RKWVMLRVFSYVCFIVSTFG  312 (326)
Q Consensus       245 v~~~~~lAi~iP~-~~~v~~lvGa~~~~~l~filP~l~yl~~~~~~---~~~--~~~~~~~~i~~~G~v~~v~G  312 (326)
                      .+..+++|..-|+ |....++.|. ..+.+.+++|+++-+|.+|.+   +..  ..+..+++++++|++..+.-
T Consensus       319 flppli~a~~~P~~F~~al~~aG~-~~ail~~ilP~~m~~~~r~~~~~~~y~v~gg~~~~~~v~~~G~~~i~~~  391 (403)
T PRK15132        319 FLPPLAFALFYPRGFVMALGYAGV-ALAVLALLLPSLLVWQSRKQNPQAGYRVKGGRPALALVFLCGIAVIGIQ  391 (403)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhcCCCCCccCCCChHHHHHHHHHHHHHHHHH
Confidence            7888899999997 6667888775 578999999999999877543   211  02345667767777665543

>PRK10483 tryptophan permease; Provisional

Probab=98.31  E-value=7.8e-05  Score=71.91  Aligned_cols=168  Identities=13%  Similarity=0.085  Sum_probs=112.3

Q ss_pred             HHHHHHHHHHHhcCCcchhHHHHhhhCCCCcccccHhhhhhhhhhHHHHHhhhh--hchhccc---------cccccccc
Q 020470           95 LVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFC--GGFGYAA---------FGDNTPGN  163 (326)
Q Consensus        95 ~~~~~~~~~~faf~~h~~~~~i~~~m~~p~p~~~~~~~v~~~s~~~~~~lY~~~--g~~GY~~---------fG~~~~~~  163 (326)
                      ....++|++.+||+.|.++|++.+.+++ ++  ++.+|++..+..+..++|+.-  ...|=+.         -|+++ +.
T Consensus       193 ~~~~alPvl~~SFgfh~iIPsl~~y~~~-d~--~kir~~I~iGs~Iplv~yl~W~~~~lg~l~~~~~~~~~~~~~ni-~~  268 (414)
T PRK10483        193 YLLMTLPFCLASFGYHGNVPSLMKYYGK-DP--KTIVKCLVYGTLMALALYTIWLLATMGNIPRPEFIGIAEKGGNI-DV  268 (414)
T ss_pred             HHHHHHHHHHhhccCCCcchHHHHHhCc-CH--HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCCh-HH
Confidence            4668999999999999999999999885 23  689999999999999999883  2222221         12111 11


Q ss_pred             cccccCCC-CChHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHhhhCCCCCCCCCccccCCCCCCcccccchhhhHHH
Q 020470          164 LLTGFGFY-EPYWLIDLANAFIVIHLVGGYQVYSQPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRT  242 (326)
Q Consensus       164 il~n~~~~-~~~~~~~~~~~~~~l~~~~sypl~~~p~~~~le~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~r~~~r~  242 (326)
                      .+..+... ++.+...++.++..+.+.+||-=.....+|.+.+.++.+  +++                   ..|...-.
T Consensus       269 L~~~l~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~d~l~D~~k~~--~~~-------------------~~r~~~~~  327 (414)
T PRK10483        269 LVQALSGVLNSRSLDLLLVVFSNFAVASSFLGVTLGLFDYLADLFGFD--DSA-------------------MGRFKTAL  327 (414)
T ss_pred             HHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--Ccc-------------------ccceeeeh
Confidence            11111110 233444556666666667776544556678777777542  110                   11222334


Q ss_pred             HHHHHHHHHHHHCCC-hHHHHHHHhhhhhhhHHHHhhHHHHHHhcCc
Q 020470          243 VYVVSVTAIAMSFPY-FNQVLGVIGGVIFWPLTIYFPVEMYFKQMNI  288 (326)
Q Consensus       243 ~~v~~~~~lAi~iP~-~~~v~~lvGa~~~~~l~filP~l~yl~~~~~  288 (326)
                      +..+...++|...|+ |=..++..|.. .+.+.-++|+++-++.||+
T Consensus       328 ltflPPl~~al~~P~~Fl~AL~yAG~~-~~il~~ilP~lM~~~~Rk~  373 (414)
T PRK10483        328 LTFLPPVVGGLLFPNGFLYAIGYAGLA-ATIWAAIVPALLARASRKR  373 (414)
T ss_pred             hhHhhHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhc
Confidence            566788899999998 77899999976 6778889999999998764

>TIGR00814 stp serine transporter

Probab=98.26  E-value=1.7e-05  Score=76.47  Aligned_cols=199  Identities=9%  Similarity=0.088  Sum_probs=124.9

Q ss_pred             HHHHHHHHHHHHHhcCCcchhHHHH----hhhCCCCcccccHhhhhhhhhhHHHHHhhhhhchhcccccccc-c----cc
Q 020470           93 MWLVAQALGDIAFAYPYSLILIEIQ----DTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNT-P----GN  163 (326)
Q Consensus        93 ~~~~~~~~~~~~faf~~h~~~~~i~----~~m~~p~p~~~~~~~v~~~s~~~~~~lY~~~g~~GY~~fG~~~-~----~~  163 (326)
                      +.+...+++...+||.+|..+++..    +|.+||+.+.+|.+|+...+..+.+++|+..-...-...+.+. +    +|
T Consensus       185 ~~~i~~alpv~~~SF~~~~iIssl~~~~~~~~~~~~~~~~k~~k~i~~~~~i~~~~y~~~~~s~~~~l~~~~~~~a~~~n  264 (397)
T TIGR00814       185 LKTLWLTIPVMVFSFNHSPIISSFAISYREEYGDKEFAERKCLRIMKGASLILVATVMFFVFSCVLSLSPAEAVAAKEQN  264 (397)
T ss_pred             HHHHHHHHHHHHHHHHccccchHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHcC
Confidence            3467789999999999999999987    3344333235788899988888888888876544444444332 1    12


Q ss_pred             --cccccCC-CCChHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHhh-hCCCCCCCCCccccCCCCCCcccccchhhh
Q 020470          164 --LLTGFGF-YEPYWLIDLANAFIVIHLVGGYQVYSQPIFAHFEKWICE-KFPENGFLNNEFFLKPPLMPAFRWNPLRLC  239 (326)
Q Consensus       164 --il~n~~~-~~~~~~~~~~~~~~~l~~~~sypl~~~p~~~~le~~~~~-~~~~~~~~~~~~~~~~p~~~~~~~~~~r~~  239 (326)
                        .+..+.. .+..+...+..+.-.+.+..|+-=.....+|.++..+.+ +.++++        +      .+.+..+..
T Consensus       265 is~Ls~l~~~~~~~~i~~~~~~f~~~Ai~tSFlG~~lg~~e~l~~l~~~~~~~~~~--------~------~~~~~~~~~  330 (397)
T TIGR00814       265 ISILSYLANHFNAAWISYAGPIVAIVAISKSFFGHYLGAREGLNGIVLNSLKMKGK--------K------INIRKLNRA  330 (397)
T ss_pred             cHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccccc--------c------cCHHHHHHH
Confidence              1221110 012343444555555566677666667888998887732 111110        0      011234444


Q ss_pred             HHHHHHHHHHHHHHHCCChHHHHHHHhhhhhhhHHHHhhHHHHHHhcCcchhHHHHHHHHHHHHHHH
Q 020470          240 FRTVYVVSVTAIAMSFPYFNQVLGVIGGVIFWPLTIYFPVEMYFKQMNIEAWTRKWVMLRVFSYVCF  306 (326)
Q Consensus       240 ~r~~~v~~~~~lAi~iP~~~~v~~lvGa~~~~~l~filP~l~yl~~~~~~~~~~~~~~~~~i~~~G~  306 (326)
                      ......+.++..|+.=|++=++++-+|+-....+.|++|...-.|....++.+ .+..|+++.+.|+
T Consensus       331 ~~~~~~~~~w~~~~~n~~il~~i~~~~gp~~a~i~~~~p~~~~~~v~~l~~~~-~~~~~~fv~~~g~  396 (397)
T TIGR00814       331 IAIFIVLTTWIVAYINPSILSFIEALGGPIIAMILFLMPMYAIYKVPALKKYR-GRISNVFVTVIGL  396 (397)
T ss_pred             HHHHHHHHHHHHHHhCccHHHHHHHhhHHHHHHHHHHHHHHHHHccHHHHHhC-CCcchheeEeeec
Confidence            55666778888999999999999988888889999999998877753322221 1124666555553

The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.

>PRK09664 tryptophan permease TnaB; Provisional

Probab=98.22  E-value=0.00015  Score=69.85  Aligned_cols=191  Identities=11%  Similarity=0.060  Sum_probs=122.1

Q ss_pred             HHHHHHHHHHHhcCCcchhHHHHhhhCCCCcccccHhhhhhhhhhHHHHHhhhh--hchhccc---------ccccccc-
Q 020470           95 LVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFC--GGFGYAA---------FGDNTPG-  162 (326)
Q Consensus        95 ~~~~~~~~~~faf~~h~~~~~i~~~m~~p~p~~~~~~~v~~~s~~~~~~lY~~~--g~~GY~~---------fG~~~~~-  162 (326)
                      .+..++|++.+||+.|+++|++.+.+++ ++  ++.+|++..+..+..++|++.  .+.|=+.         -|+++.. 
T Consensus       194 ~i~~alPVl~~SFgfh~iIPsl~~y~~~-d~--~~~~kaIl~Gs~IpLviY~~W~~~ilG~lp~~~~~~~~~~g~nv~~l  270 (415)
T PRK09664        194 YIFMALPVCLASFGFHGNIPSLIICYGK-RK--DKLIKSVVFGSLLALVIYLFWLYCTMGNIPRESFKAIISSGGNVDSL  270 (415)
T ss_pred             HHHHHHHHHHHhhhCCCcchHHHHHhCc-cH--HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCCchHH
Confidence            3567899999999999999999999884 23  678888888888888888653  3333211         2222211 


Q ss_pred             --ccccccCCCCChHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHhhhCCCCCCCCCccccCCCCCCcccccchhhhH
Q 020470          163 --NLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCF  240 (326)
Q Consensus       163 --~il~n~~~~~~~~~~~~~~~~~~l~~~~sypl~~~p~~~~le~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~r~~~  240 (326)
                        ....+.   +..+...++.++..+.+.+||-=.....+|.+.+.++.+  +++                   ..|...
T Consensus       271 ~~s~~~~~---~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~D~l~D~~~~~--~~~-------------------~~r~~~  326 (415)
T PRK09664        271 VKSFLGTK---QHGIIEFCLLVFSNLAVASSFFGVTLGLFDYLADLFKID--NSH-------------------GGRFKT  326 (415)
T ss_pred             HHHHHhhc---cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--Ccc-------------------ccceee
Confidence              111121   234555566666666777776544456677777766542  110                   123323


Q ss_pred             HHHHHHHHHHHHHHCCC-hHHHHHHHhhhhhhhHHHHhhHHHHHHhcCc-chhH----HHHHHHHHHHHHHHHHHHHHH
Q 020470          241 RTVYVVSVTAIAMSFPY-FNQVLGVIGGVIFWPLTIYFPVEMYFKQMNI-EAWT----RKWVMLRVFSYVCFIVSTFGL  313 (326)
Q Consensus       241 r~~~v~~~~~lAi~iP~-~~~v~~lvGa~~~~~l~filP~l~yl~~~~~-~~~~----~~~~~~~~i~~~G~v~~v~Gt  313 (326)
                      -.+..+...++|...|+ |=..++..|.. .+.+.-++|+++-+|.||+ +...    ..+....+.+.+|++..+.-.
T Consensus       327 ~~ltflPPl~~al~~P~gFl~AL~yAG~~-~~il~~ilP~lM~~~~Rk~~~~~~y~v~GG~~~l~~~~~~g~~ii~~~~  404 (415)
T PRK09664        327 VLLTFLPPALLYLIFPNGFIYGIGGAGLC-ATIWAVIIPAVLAIKARKKFPNQMFTVWGGNLIPAIVILFGITVILCWF  404 (415)
T ss_pred             ehhhHhhhHHHHHHhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcccCCCCceeeCCHHHHHHHHHHHHHHHHHHH
Confidence            34566788899999998 77899999986 5688889999999998764 2110    112334455566766655433

>PRK13629 threonine/serine transporter TdcC; Provisional

Probab=98.22  E-value=0.00012  Score=70.89  Aligned_cols=203  Identities=10%  Similarity=0.043  Sum_probs=127.5

Q ss_pred             HHHHHHHHHHHhcCCcchhHHHHhhhCC-------CCcccccHhhhhhhhhhHHHHHhhhhhchhcccccccc-------
Q 020470           95 LVAQALGDIAFAYPYSLILIEIQDTLKS-------PPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNT-------  160 (326)
Q Consensus        95 ~~~~~~~~~~faf~~h~~~~~i~~~m~~-------p~p~~~~~~~v~~~s~~~~~~lY~~~g~~GY~~fG~~~-------  160 (326)
                      ....++|++.|||+-|+.+|++...+|+       ++...+|-+|++..+..+..++|++.-+.--..-+.+.       
T Consensus       210 ~l~~~iPv~v~SF~f~~iIssl~~y~r~~y~~~~~~~~a~~k~~rii~~gs~i~lv~y~fwv~S~~gsLs~~~l~~a~~q  289 (443)
T PRK13629        210 TVWLGISIMVFSFNFSPIVSSFVVSKREEYEKDFGRDFTERKCSQIISRASMLMVAVVMFFAFSCLFTLSPQNMAEAKAQ  289 (443)
T ss_pred             HHHHHHHHHHHHHhccccchHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHh
Confidence            4567899999999999999998887432       12124788899999988888888876544443333322       


Q ss_pred             ccccccc----cCCC-CC-----hHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHhh--hCCCCCCCCCccccCCCCC
Q 020470          161 PGNLLTG----FGFY-EP-----YWLIDLANAFIVIHLVGGYQVYSQPIFAHFEKWICE--KFPENGFLNNEFFLKPPLM  228 (326)
Q Consensus       161 ~~~il~n----~~~~-~~-----~~~~~~~~~~~~l~~~~sypl~~~p~~~~le~~~~~--~~~~~~~~~~~~~~~~p~~  228 (326)
                      +.+++..    ++.. +.     .+...++.+...+.+..||-=.....+|.++....+  ..++++        +.   
T Consensus       290 n~s~Ls~La~~~~~~~~~~~~~~~~i~~~~~ifa~~AI~TSFlGv~LGl~E~l~gl~~~~~~~~~~~--------~~---  358 (443)
T PRK13629        290 NIPVLSYLANHFASMTGTKSTFAITLEYAASIIALVAIFKSFFGHYLGTLEGLNGLILKFGYKGDKT--------KV---  358 (443)
T ss_pred             CCcHHHHHHHHhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc--------cc---
Confidence            1222222    2200 01     223344444545555666644555778888887742  111110        00   


Q ss_pred             CcccccchhhhHHHHHHHHHHHHHHHCCChHHHHHHHhhhhhhhHHHHhhHHHHHHhcCcchhHHHHHHHHHHHHHHHHH
Q 020470          229 PAFRWNPLRLCFRTVYVVSVTAIAMSFPYFNQVLGVIGGVIFWPLTIYFPVEMYFKQMNIEAWTRKWVMLRVFSYVCFIV  308 (326)
Q Consensus       229 ~~~~~~~~r~~~r~~~v~~~~~lAi~iP~~~~v~~lvGa~~~~~l~filP~l~yl~~~~~~~~~~~~~~~~~i~~~G~v~  308 (326)
                         +.+..+........+.++..|+.=|++=++++-+|+-....+.|++|...-.|....++.+ .+..|+++.+.|++.
T Consensus       359 ---~~~~~~~~~~~~~~~~~w~~~~~np~il~~i~~~~gPiia~il~l~P~y~i~kvp~l~~yr-~~~~n~fv~~~Gl~~  434 (443)
T PRK13629        359 ---SLGKLNTISMIFIMGSTWVVAYANPNILDLIEAMGAPIIASLLCLLPMYAIRKAPSLAKYR-GRLDNVFVTVIGLLT  434 (443)
T ss_pred             ---CHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHhhhHHHHHHHHHHHHHHHHccHHHHHhC-CCchhHHHHHHHHHH
Confidence               1124455556677788889999999999999988888889999999998877753322221 123577777777665


Q ss_pred             HHHH
Q 020470          309 STFG  312 (326)
Q Consensus       309 ~v~G  312 (326)
                      ...-
T Consensus       435 i~~~  438 (443)
T PRK13629        435 ILNI  438 (443)
T ss_pred             HHHH
Confidence            5433

>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter

Probab=97.86  E-value=0.0014  Score=64.65  Aligned_cols=47  Identities=11%  Similarity=0.100  Sum_probs=40.4

Q ss_pred             HHHHhcCCcchhHHHHhhhCCCCcccccHhhhhhhhhhHHHHHhhhhhch
Q 020470          102 DIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGF  151 (326)
Q Consensus       102 ~~~faf~~h~~~~~i~~~m~~p~p~~~~~~~v~~~s~~~~~~lY~~~g~~  151 (326)
                      .+.|+|.|-......-+|+|||+   |+.+|++..+..++.++|....+.
T Consensus       202 ~~~~af~G~e~~~~~a~E~knP~---r~iPrAi~~~~~~~~~~y~l~~~~  248 (474)
T TIGR03813       202 SIFLFYAGMEMNAVHVKDVDNPD---KNYPIAILIAALGTVLIFVLGTLA  248 (474)
T ss_pred             HHHHHHhchhHhHHHHHhccCcc---cchhHHHHHHHHHHHHHHHHHHHH
Confidence            45789999999999999999882   679999999999999999876544

Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.

>PRK10746 putative transport protein YifK; Provisional

Probab=97.84  E-value=0.0048  Score=60.76  Aligned_cols=54  Identities=19%  Similarity=0.095  Sum_probs=45.0

Q ss_pred             HHHHHHHHHHHHHhcCCcchhHHHHhhhCCCCcccccHhhhhhhhhhHHHHHhhhhh
Q 020470           93 MWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCG  149 (326)
Q Consensus        93 ~~~~~~~~~~~~faf~~h~~~~~i~~~m~~p~p~~~~~~~v~~~s~~~~~~lY~~~g  149 (326)
                      +.++..++....|+|.|-......-.|+|||+   |+++|+...+.....++|....
T Consensus       199 ~~g~~~~~~~~~faf~G~e~v~~~a~E~knP~---k~iP~Ai~~~~~~i~~~yv~~~  252 (461)
T PRK10746        199 WKGFLTALCIVVASYQGVELIGITAGEAKNPQ---VTLRSAVGKVLWRILIFYVGAI  252 (461)
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHhcChh---hHHHHHHHHHHHHHHHHHHHHH
Confidence            44667888899999999999999999999882   6899998877777777777653

>PRK11021 putative transporter; Provisional

Probab=97.74  E-value=0.0086  Score=57.92  Aligned_cols=57  Identities=14%  Similarity=0.261  Sum_probs=49.4

Q ss_pred             HHHHHHHHHHHHHHhcCCcchhHHHHhhhCCCCcccccHhhhhhhhhhHHHHHhhhhhch
Q 020470           92 KMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGF  151 (326)
Q Consensus        92 ~~~~~~~~~~~~~faf~~h~~~~~i~~~m~~p~p~~~~~~~v~~~s~~~~~~lY~~~g~~  151 (326)
                      ++.+...++....|+|.|-......-+|+|||+   |+.+|++..+..++.++|+.....
T Consensus       175 ~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~---k~iPrAi~~~~~~~~~lYil~~~~  231 (410)
T PRK11021        175 EWSGLFAALGVMFWCFVGIEAFAHLASEFKNPE---RDFPRALMIGLLLAGLVYWACTVV  231 (410)
T ss_pred             cHHHHHHHHHHHHHHHhcHHHHHhhHHhccCcc---ccccHHHHHHHHHHHHHHHHHHHH
Confidence            344677788899999999999999999999872   679999999999999999997653

>PRK10655 potE putrescine transporter; Provisional

Probab=97.73  E-value=0.007  Score=59.06  Aligned_cols=55  Identities=11%  Similarity=0.143  Sum_probs=47.0

Q ss_pred             HHHHHHHHHHHHhcCCcchhHHHHhhhCCCCcccccHhhhhhhhhhHHHHHhhhhhch
Q 020470           94 WLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGF  151 (326)
Q Consensus        94 ~~~~~~~~~~~faf~~h~~~~~i~~~m~~p~p~~~~~~~v~~~s~~~~~~lY~~~g~~  151 (326)
                      .+...++....|+|.|-......-+|+|||+   |+.+|++..+..++.++|......
T Consensus       189 ~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~---r~iPrAi~~~~~~~~~~Y~l~~~~  243 (438)
T PRK10655        189 SAVGSSIAMTLWAFLGLESACANSDAVENPE---RNVPIAVLGGTLGAAVIYIVSTNV  243 (438)
T ss_pred             HHHHHHHHHHHHHHhhhhhhhhhHHHhhCcc---ccccHHHHHHHHHHHHHHHHHHHH
Confidence            3556677888999999999999999999882   689999999999999999886543

>TIGR03810 arg_ornith_anti arginine/ornithine antiporter

Probab=97.70  E-value=0.0044  Score=61.11  Aligned_cols=59  Identities=10%  Similarity=0.119  Sum_probs=48.3

Q ss_pred             HHHHHHHHHHHhcCCcchhHHHHhhhCCCCcccccHhhhhhhhhhHHHHHhhhhhchhccccc
Q 020470           95 LVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFG  157 (326)
Q Consensus        95 ~~~~~~~~~~faf~~h~~~~~i~~~m~~p~p~~~~~~~v~~~s~~~~~~lY~~~g~~GY~~fG  157 (326)
                      ++..++....|+|.|-......-.|.||+    |+.+|+...+...+.++|..+.+..+...+
T Consensus       196 ~~~~~~~~~~~~f~G~e~~~~~a~e~k~~----k~ip~ai~~~~~~v~~lY~l~~~~~~g~~~  254 (468)
T TIGR03810       196 QVKNMMLVTVWVFIGIEGASMLSARAEKR----SDVGKATVIGLIGVLAIYVLVSVLSYGIMT  254 (468)
T ss_pred             HHHHHHHHHHHHHHhHhHHhhhHhhccCc----ccchHHHHHHHHHHHHHHHHHHHHHHhCcC
Confidence            45567888999999999988888888854    899999999999999999988765554433

Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.

>PRK15049 L-asparagine permease; Provisional

Probab=97.69  E-value=0.0066  Score=60.44  Aligned_cols=56  Identities=16%  Similarity=0.180  Sum_probs=45.1

Q ss_pred             HHHHHHHHHHHHHhcCCcchhHHHHhhhCCCCcccccHhhhhhhhhhHHHHHhhhhhch
Q 020470           93 MWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGF  151 (326)
Q Consensus        93 ~~~~~~~~~~~~faf~~h~~~~~i~~~m~~p~p~~~~~~~v~~~s~~~~~~lY~~~g~~  151 (326)
                      +.+.+.++....|+|.|-......-.|+|||+   |+.+|++..++....++|+.....
T Consensus       219 ~~~~~~~~~~~~faf~G~e~i~~~aeE~knP~---r~iPrAi~~~~~~i~~~yi~~~~~  274 (499)
T PRK15049        219 LLPALVLIQGVVFAFASIEMVGTAAGECKDPQ---TMVPKAINSVIWRIGLFYVGSVVL  274 (499)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHhcChh---hHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555667788999999999999999999882   579999988888888888876544

>PRK10644 arginine:agmatin antiporter; Provisional

Probab=97.60  E-value=0.01  Score=58.09  Aligned_cols=54  Identities=9%  Similarity=0.159  Sum_probs=47.0

Q ss_pred             HHHHHHHHHHHhcCCcchhHHHHhhhCCCCcccccHhhhhhhhhhHHHHHhhhhhch
Q 020470           95 LVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGF  151 (326)
Q Consensus        95 ~~~~~~~~~~faf~~h~~~~~i~~~m~~p~p~~~~~~~v~~~s~~~~~~lY~~~g~~  151 (326)
                      .+..++....|+|.|-......-+|+|||+   |+.+|++..+..++.++|..+.+.
T Consensus       192 ~~~~~~~~~~~af~G~e~~~~~aeE~k~P~---r~iPrai~~s~~i~~v~Y~l~~~~  245 (445)
T PRK10644        192 AIQSTLNVTLWSFIGVESASVAAGVVKNPK---RNVPIATIGGVLIAAVCYVLSSTA  245 (445)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHhhCcc---cchhHHHHHHHHHHHHHHHHHHHH
Confidence            455677788999999999999999999882   679999999999999999988665

>PRK10249 phenylalanine transporter; Provisional

Probab=97.60  E-value=0.011  Score=58.20  Aligned_cols=55  Identities=15%  Similarity=0.131  Sum_probs=46.5

Q ss_pred             HHHHHHHHHHHHHhcCCcchhHHHHhhhCCCCcccccHhhhhhhhhhHHHHHhhhhhc
Q 020470           93 MWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGG  150 (326)
Q Consensus        93 ~~~~~~~~~~~~faf~~h~~~~~i~~~m~~p~p~~~~~~~v~~~s~~~~~~lY~~~g~  150 (326)
                      +.++..++....|+|.|-......-+|+|||+   |+.+|++..+.....++|.....
T Consensus       208 ~~~~~~~~~~~~~af~G~e~~~~~a~E~~~P~---k~iPrai~~~~~~~~~~y~~~~~  262 (458)
T PRK10249        208 WNGLILSLAVIMFSFGGLELIGITAAEARDPE---KSIPKAVNQVVYRILLFYIGSLV  262 (458)
T ss_pred             HHHHHHHHHHHHHHHcCHHHHHHHHHHhcCHh---hHHHHHHHHHHHHHHHHHHHHHH
Confidence            33567788899999999999999999999872   67999999999889999977533

>TIGR00913 2A0310 amino acid permease (yeast)

Probab=97.53  E-value=0.043  Score=54.18  Aligned_cols=55  Identities=13%  Similarity=0.192  Sum_probs=47.8

Q ss_pred             HHHHHHHHHHHHHhcCCcchhHHHHhhhCCCCcccccHhhhhhhhhhHHHHHhhhhhc
Q 020470           93 MWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGG  150 (326)
Q Consensus        93 ~~~~~~~~~~~~faf~~h~~~~~i~~~m~~p~p~~~~~~~v~~~s~~~~~~lY~~~g~  150 (326)
                      +.++..++....|+|.|-......-+|+|||+   |+.+|++..+...+.++|.....
T Consensus       196 ~~~~~~~~~~~~~af~G~e~~~~~a~E~knP~---r~iPrai~~~~~~~~~~Y~l~~~  250 (478)
T TIGR00913       196 FKGVCSVFVTAAFSFGGTELVALTAGEAANPR---KSIPRAAKRTFWRILVFYILTLF  250 (478)
T ss_pred             HHHHHHHHHHHHhhhccHHHHHHHHHhhcChh---hHHHHHHHHHHHHHHHHHHHHHH
Confidence            45677788889999999999999999999872   68999999999999999998654

>PRK10435 cadB lysine/cadaverine antiporter; Provisional

Probab=97.52  E-value=0.017  Score=56.32  Aligned_cols=59  Identities=12%  Similarity=0.038  Sum_probs=50.6

Q ss_pred             HHHHHHHHHHHHHHhcCCcchhHHHHhhhCCCCcccccHhhhhhhhhhHHHHHhhhhhchhc
Q 020470           92 KMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGY  153 (326)
Q Consensus        92 ~~~~~~~~~~~~~faf~~h~~~~~i~~~m~~p~p~~~~~~~v~~~s~~~~~~lY~~~g~~GY  153 (326)
                      ...++..++....|+|.|-......-+|+|||+   |+.+|+...+..++.++|....+.-.
T Consensus       185 ~~~~~~~a~~~~~faf~G~E~~~~~a~E~knP~---r~iPrAi~~~~~iv~ilYil~~~~~~  243 (435)
T PRK10435        185 DGHAIIKSILLCLWAFVGVESAAVSTGMVKNPK---RTVPLATMLGTGLAGIIYIAATQVIS  243 (435)
T ss_pred             hHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCcc---ccccHHHHHHHHHHHHHHHHHHHHHH
Confidence            345777888899999999999999999999872   67999999999999999998766543

>PRK10197 gamma-aminobutyrate transporter; Provisional

Probab=97.50  E-value=0.016  Score=56.74  Aligned_cols=56  Identities=20%  Similarity=0.179  Sum_probs=47.4

Q ss_pred             HHHHHHHHHHHHHhcCCcchhHHHHhhhCCCCcccccHhhhhhhhhhHHHHHhhhhhch
Q 020470           93 MWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGF  151 (326)
Q Consensus        93 ~~~~~~~~~~~~faf~~h~~~~~i~~~m~~p~p~~~~~~~v~~~s~~~~~~lY~~~g~~  151 (326)
                      +.+...++....|+|.|-......-.|+|||+   |+.+|+...+.....++|....+.
T Consensus       180 ~~~~~~a~~~~~faf~G~e~~~~~a~E~knP~---r~iPrai~~~~~~i~i~Yil~~~~  235 (446)
T PRK10197        180 FGAVLSAMLITMFSFMGAEIVTIAAAESDTPE---KHIVRATNSVIWRISIFYLCSIFV  235 (446)
T ss_pred             HHHHHHHHHHHHHHHhCHHHHHHHHHHhcChh---hhHHHHHHHHHHHHHHHHHHHHHH
Confidence            34677889999999999999999999999872   679999988888888899885443

>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A

Probab=97.45  E-value=0.017  Score=55.98  Aligned_cols=108  Identities=17%  Similarity=0.192  Sum_probs=68.3

Q ss_pred             HHHHHHHHHHhcCCcchhHHHHhhhCCCCcccccHhhhhhhhhhHHHHHhhhhhchhccccccccc---cccccccC---
Q 020470           96 VAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTP---GNLLTGFG---  169 (326)
Q Consensus        96 ~~~~~~~~~faf~~h~~~~~i~~~m~~p~p~~~~~~~v~~~s~~~~~~lY~~~g~~GY~~fG~~~~---~~il~n~~---  169 (326)
                      .+.+++...|+|.|-......-+|+||     |+.+|++..+..++.++|......-....+++..   ++..+...   
T Consensus       190 ~~~~~~~~~~~~~G~e~~~~~~~E~k~-----k~ip~ai~~~~~~~~i~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (426)
T PF13520_consen  190 FLAGFSVAFFAFSGFEAIASLAEENKN-----KTIPRAIIISIIIVAIIYILFSIALLGALPDDELANSSNSPSPFAVLA  264 (426)
T ss_dssp             HHHHHHHHGGGGTTTTHHHHGGGGSSS-----HHHHHHHHHHHHHHHHHHHHHHHHHHTTSTHCHHHTTTCHHCHHHHHH
T ss_pred             hhhHHHHHHhhcccccccccccccccc-----hhheeecccchhHHHHHHhhhhheeeecccchhhhcccccccccchhh
Confidence            467788899999999999999999873     6899999999999999999986655555544321   12111110   


Q ss_pred             -CCCChHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHh
Q 020470          170 -FYEPYWLIDLANAFIVIHLVGGYQVYSQPIFAHFEKWIC  208 (326)
Q Consensus       170 -~~~~~~~~~~~~~~~~l~~~~sypl~~~p~~~~le~~~~  208 (326)
                       .....+...+..+...+..+.+.........+.++.+-+
T Consensus       265 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~l~~~a~  304 (426)
T PF13520_consen  265 SAVGGSWLAIIVSIAAILSLFGSINAFIFGASRLLYAMAR  304 (426)
T ss_dssp             HHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccccccccccccccccccccchhhcchhhccccccc
Confidence             001123334444555555555554444444555555544

...

>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family

Probab=97.44  E-value=0.029  Score=55.42  Aligned_cols=57  Identities=9%  Similarity=0.074  Sum_probs=48.1

Q ss_pred             HHHHHHHHHHHHHhcCCcchhHHHHhhhCCCCcccccHhhhhhhhhhHHHHHhhhhhchhc
Q 020470           93 MWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGY  153 (326)
Q Consensus        93 ~~~~~~~~~~~~faf~~h~~~~~i~~~m~~p~p~~~~~~~v~~~s~~~~~~lY~~~g~~GY  153 (326)
                      +..+..++....|+|.|-......-+|+||+    |+.+|++..+..++.++|........
T Consensus       198 ~~~~~~~~~~~~~af~G~e~~~~~a~E~k~~----r~iPrai~~~~~i~~~~Yil~~~~~~  254 (473)
T TIGR00905       198 FSQVKNTMLVTLWVFIGIEGAVVSSGRAKNK----SDVGKATVLGTLGALVIYILITLLSL  254 (473)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHhcc----ccchHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456677888999999999999999999963    88999999999999999988765433

This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.

>PRK11387 S-methylmethionine transporter; Provisional

Probab=97.44  E-value=0.032  Score=55.09  Aligned_cols=56  Identities=13%  Similarity=0.133  Sum_probs=47.3

Q ss_pred             HHHHHHHHHHHHHhcCCcchhHHHHhhhCCCCcccccHhhhhhhhhhHHHHHhhhhhch
Q 020470           93 MWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGF  151 (326)
Q Consensus        93 ~~~~~~~~~~~~faf~~h~~~~~i~~~m~~p~p~~~~~~~v~~~s~~~~~~lY~~~g~~  151 (326)
                      ..+...++....|+|.|-......-+|+|||+   |+.+|++..+...+.++|......
T Consensus       205 ~~~~~~~~~~~~faf~G~e~~~~~a~E~knP~---r~iPrAi~~~~~~~~~~y~~~~~~  260 (471)
T PRK11387        205 GLPILMTMVAVNFAFSGTELIGIAAGETENPA---KVIPVAIRTTIARLVIFFVGTVLV  260 (471)
T ss_pred             HHHHHHHHHHHHHHHcCHHHHHHHHHHhcChh---hHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34566777788999999999999999999872   679999999999999999887654

>PRK10580 proY putative proline-specific permease; Provisional

Probab=97.37  E-value=0.054  Score=53.23  Aligned_cols=54  Identities=19%  Similarity=0.170  Sum_probs=44.1

Q ss_pred             HHHHHHHHHHHHHhcCCcchhHHHHhhhCCCCcccccHhhhhhhhhhHHHHHhhhhh
Q 020470           93 MWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCG  149 (326)
Q Consensus        93 ~~~~~~~~~~~~faf~~h~~~~~i~~~m~~p~p~~~~~~~v~~~s~~~~~~lY~~~g  149 (326)
                      +.+...++....|+|.|-......-+|+|||+   |+.+|+...+......+|....
T Consensus       198 ~~~~~~~~~~~~fsf~G~e~~~~~a~E~knP~---k~iPrAi~~~~~~~~~~y~~~~  251 (457)
T PRK10580        198 WLGMVMSLQMVMFAYGGIEIIGITAGEAKDPE---KSIPRAINSVPMRILVFYVGTL  251 (457)
T ss_pred             hHHHHHHHHHHHHHHhCHHHHHHHHHHhcChh---hHHHHHHHHHHHHHHHHHHHHH
Confidence            34667788889999999999999999999872   5689988877777777776654

>PRK11049 D-alanine/D-serine/glycine permease; Provisional

Probab=97.37  E-value=0.051  Score=53.62  Aligned_cols=57  Identities=16%  Similarity=0.126  Sum_probs=46.1

Q ss_pred             HHHHHHHHHHHHHhcCCcchhHHHHhhhCCCCcccccHhhhhhhhhhHHHHHhhhhhchh
Q 020470           93 MWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFG  152 (326)
Q Consensus        93 ~~~~~~~~~~~~faf~~h~~~~~i~~~m~~p~p~~~~~~~v~~~s~~~~~~lY~~~g~~G  152 (326)
                      +.+.+.++....|+|.|-......-+|+|||+   |+.+|++..+.....++|......-
T Consensus       210 ~~~~~~~~~~~~~af~G~e~~~~~a~E~knP~---r~iPrai~~~~~~~~~~y~l~~~~~  266 (469)
T PRK11049        210 LSGFFAGFQIAVFAFVGIELVGTTAAETKDPE---KSLPRAINSIPIRIIMFYVFALIVI  266 (469)
T ss_pred             HHHHHHHHHHHHHHHhcHHHHHHHHHHhcCHh---hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34577888899999999999999999999872   5799999877777788887665443

>TIGR00906 2A0303 cationic amino acid transport permease

Probab=97.35  E-value=0.016  Score=58.44  Aligned_cols=56  Identities=13%  Similarity=0.147  Sum_probs=48.9

Q ss_pred             HHHHHHHHHHHHHhcCCcchhHHHHhhhCCCCcccccHhhhhhhhhhHHHHHhhhhhch
Q 020470           93 MWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGF  151 (326)
Q Consensus        93 ~~~~~~~~~~~~faf~~h~~~~~i~~~m~~p~p~~~~~~~v~~~s~~~~~~lY~~~g~~  151 (326)
                      +.+++.+.....|+|.|-......-.|+|||+   |+.+|+...+..+++++|..+...
T Consensus       230 ~~g~l~g~~~~~faf~Gfd~v~~~aeE~knP~---r~iP~aii~sl~i~~vlY~lv~~~  285 (557)
T TIGR00906       230 FTGVLSGAATCFFAFIGFDAIATTGEEVKNPQ---RAIPIGIVTSLLVCFVAYFLMSAA  285 (557)
T ss_pred             hHHHHHHHHHHHHHHhhHHHHHHhHHhccCcc---ccccHHHHHHHHHHHHHHHHHHHH
Confidence            34677888899999999999999999999882   679999999999999999987654

>PRK11357 frlA putative fructoselysine transporter; Provisional

Probab=97.29  E-value=0.02  Score=56.02  Aligned_cols=56  Identities=14%  Similarity=0.231  Sum_probs=47.9

Q ss_pred             HHHHHHHHHHHHHhcCCcchhHHHHhhhCCCCcccccHhhhhhhhhhHHHHHhhhhhch
Q 020470           93 MWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGF  151 (326)
Q Consensus        93 ~~~~~~~~~~~~faf~~h~~~~~i~~~m~~p~p~~~~~~~v~~~s~~~~~~lY~~~g~~  151 (326)
                      +.+...++....|+|.|-......-+|+|||+   |+.+|++..+..++.++|......
T Consensus       194 ~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~---r~iP~Ai~~~~~i~~~~Y~l~~~~  249 (445)
T PRK11357        194 FMALLAGISATSWSYTGMASICYMTGEIKNPG---KTMPRALIGSCLLVLVLYTLLALV  249 (445)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHhhHHHhcCcc---ccchHHHHHHHHHHHHHHHHHHHH
Confidence            34566788889999999999999999999872   679999999999999999887553

>PRK10238 aromatic amino acid transporter; Provisional

Probab=97.28  E-value=0.023  Score=55.85  Aligned_cols=52  Identities=19%  Similarity=0.199  Sum_probs=42.0

Q ss_pred             HHHHHHHHHHHHhcCCcchhHHHHhhhCCCCcccccHhhhhhhhhhHHHHHhhhh
Q 020470           94 WLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFC  148 (326)
Q Consensus        94 ~~~~~~~~~~~faf~~h~~~~~i~~~m~~p~p~~~~~~~v~~~s~~~~~~lY~~~  148 (326)
                      .+...+++...|+|.|-......-+|+|||+   |+.+|++..+.....+.|...
T Consensus       200 ~~~~~~~~~~~~af~G~e~~~~~aeE~knP~---r~iPrAi~~~~~~i~~~y~~~  251 (456)
T PRK10238        200 TGLVMMMAIIMFSFGGLELVGITAAEADNPE---QSIPKATNQVIYRILIFYIGS  251 (456)
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHhhcChh---hHHHHHHHHHHHHHHHHHHHH
Confidence            3555677889999999999999999999872   579999887777777777653

>TIGR00909 2A0306 amino acid transporter

Probab=97.22  E-value=0.046  Score=53.06  Aligned_cols=56  Identities=21%  Similarity=0.267  Sum_probs=47.9

Q ss_pred             HHHHHHHHHHHHhcCCcchhHHHHhhhCCCCcccccHhhhhhhhhhHHHHHhhhhhchh
Q 020470           94 WLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFG  152 (326)
Q Consensus        94 ~~~~~~~~~~~faf~~h~~~~~i~~~m~~p~p~~~~~~~v~~~s~~~~~~lY~~~g~~G  152 (326)
                      .+...++....|+|.|........+|+|||+   |+.+|++..+..++.++|+......
T Consensus       195 ~~~~~~~~~~~~af~G~e~~~~~~~E~~~p~---r~ip~ai~~~~~~~~v~Yil~~~~~  250 (429)
T TIGR00909       195 GGVGAATALVFFAFIGFEAISTAAEEVKNPE---RDIPKAIILSLIVVTLLYVLVAAVI  250 (429)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHhhHHhccCcc---ccccHHHHHHHHHHHHHHHHHHHHH
Confidence            3566788889999999999999999999872   6789999999999999999886543

>TIGR00908 2A0305 ethanolamine permease

Probab=97.13  E-value=0.032  Score=54.45  Aligned_cols=55  Identities=11%  Similarity=-0.075  Sum_probs=46.0

Q ss_pred             HHHHHHHHHHHHHhcCCcchhHHHHhhhCCCCcccccHhhhhhhhhhHHHHHhhhhhc
Q 020470           93 MWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGG  150 (326)
Q Consensus        93 ~~~~~~~~~~~~faf~~h~~~~~i~~~m~~p~p~~~~~~~v~~~s~~~~~~lY~~~g~  150 (326)
                      +.+++.++....|+|.|.......-+|+|||+   |+.+|++..+..++..+|...-.
T Consensus       190 ~~~~~~~~~~~~~af~G~e~~~~~aeE~k~P~---r~iprai~~s~~~~~~~~~~~~~  244 (442)
T TIGR00908       190 YVGVFAAIPFAIWFFLAVEGVAMAAEETKNPK---RDIPRGLIGAILTLLALAAGILV  244 (442)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc---cccCHHHHHHHHHHHHHHHHHHH
Confidence            34677788888999999999999999999872   57999999999888888876643

The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.

>TIGR00907 2A0304 amino acid permease (GABA permease)

Probab=97.10  E-value=0.049  Score=53.84  Aligned_cols=51  Identities=8%  Similarity=-0.026  Sum_probs=39.2

Q ss_pred             HHHHHHHHHHHhcCCcchhHHHHhhhCCCCcccccHhhhhhhhhhHHHHHhhhh
Q 020470           95 LVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFC  148 (326)
Q Consensus        95 ~~~~~~~~~~faf~~h~~~~~i~~~m~~p~p~~~~~~~v~~~s~~~~~~lY~~~  148 (326)
                      ....++....|+|.|-......-+|+|||+   |+.+|++..+..++.+++...
T Consensus       218 ~~~~~~~~~~fsf~G~e~~~~~a~E~knP~---r~iP~Ai~~s~~i~~~~~~~~  268 (482)
T TIGR00907       218 AFLLGLLNPAWSMTGYDGTAHMAEEIENPE---VVGPRAIIGAVAIGIVTGFCF  268 (482)
T ss_pred             hhhhhhhhhHHHhcCcchhhHHHHhcCChh---hhcCHHHHHHHHHHHHHHHHH
Confidence            444555567799999999999999999872   679999988887766554433

>TIGR00911 2A0308 L-type amino acid transporter

Probab=97.05  E-value=0.039  Score=54.87  Aligned_cols=56  Identities=20%  Similarity=0.121  Sum_probs=48.5

Q ss_pred             HHHHHHHHHHHHHhcCCcchhHHHHhhhCCCCcccccHhhhhhhhhhHHHHHhhhhhch
Q 020470           93 MWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGF  151 (326)
Q Consensus        93 ~~~~~~~~~~~~faf~~h~~~~~i~~~m~~p~p~~~~~~~v~~~s~~~~~~lY~~~g~~  151 (326)
                      ..++..++....|+|.|-......-.|+|||+   |+.+|++..+..++.++|....+.
T Consensus       234 ~~~~~~a~~~~~~af~G~e~~~~~a~E~knP~---r~iPrAi~~s~~~v~~~Y~l~~~a  289 (501)
T TIGR00911       234 AGGIVLAFYSGIWAYGGWNYLNFVTEEVKNPY---RTLPIAIIISMPIVTFIYVLTNIA  289 (501)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHhhhHHHhcCch---hhhHHHHHHHHHHHHHHHHHHHHH
Confidence            44666788889999999999999999999872   679999999999999999998544

>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter

Probab=97.03  E-value=0.066  Score=53.46  Aligned_cols=49  Identities=14%  Similarity=0.056  Sum_probs=40.4

Q ss_pred             HHHHHHHHhcCCcchhHHHHhhhCCCCcccccHhhhhhhhhhHHHHHhhhhh
Q 020470           98 QALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCG  149 (326)
Q Consensus        98 ~~~~~~~faf~~h~~~~~i~~~m~~p~p~~~~~~~v~~~s~~~~~~lY~~~g  149 (326)
                      ..+..+.|+|.|-......-+|+|||+   |+++|++..+..++.++|....
T Consensus       198 ~~~~~~~faf~G~E~~a~~a~E~knP~---r~~PrAi~~~~i~~~~l~~l~~  246 (507)
T TIGR00910       198 VVFVAFIGAYMGVEASASHINELENPG---RDYPLAMILLMIAAICLDAIGG  246 (507)
T ss_pred             HHHHHHHHHHhcHHHHHHHHHHccCCc---ccccHHHHHHHHHHHHHHHHHH
Confidence            344456899999999999999999882   6799999999988888887643

Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009

>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism]

Probab=96.94  E-value=0.054  Score=53.02  Aligned_cols=250  Identities=14%  Similarity=0.108  Sum_probs=130.4

Q ss_pred             cccCCchhHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHH---HHHHHHHhhhhhhhhcCCCccccccccccCchhhHHH
Q 020470           18 CEYSDTYYMLIFGAVQLILSQAPDFHNIQSLSVIAAVMSF---AYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMW   94 (326)
Q Consensus        18 ~~~~~~~~~ii~~~~~~pl~~~~~l~~L~~~S~~~~v~~~---~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (326)
                      |..++..-.++.++++..+++ .|..++++.+.+-.+.++   +...++++.+++.....+..+.+....+..  ..+.-
T Consensus       128 c~~p~~~~~lla~~~l~~lt~-~n~~~V~~a~~vq~~ft~~Kl~al~lIii~G~~~~~~g~~~~~~~~~f~g~--~~~~g  204 (479)
T KOG1287|consen  128 CDVPRVASKLLAAALLVLLTL-INSFSVKWATRVQIVFTIAKLLALLLIIITGLYLLFWGSTQNFENSEFEGS--DTDVG  204 (479)
T ss_pred             CCCchHHHHHHHHHHHHHHHH-HhhhhhhHHHHHHHHHHHHHHHHHHHHHHhchheeEecccccccccccccC--cCchH
Confidence            665555555555454455544 677778876665444433   233333344444222211111000001101  11122


Q ss_pred             HHHHHHHHHHHhcCCcchhHHHHhhhCCCCcccccHhhhhhhhhhHHHHHhhhhhchhccccccccccccccc------c
Q 020470           95 LVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTG------F  168 (326)
Q Consensus        95 ~~~~~~~~~~faf~~h~~~~~i~~~m~~p~p~~~~~~~v~~~s~~~~~~lY~~~g~~GY~~fG~~~~~~il~n------~  168 (326)
                      ++..++=.-.|||+|=..+=-+-.|+|||+   |+++++...++.+++++|+.+=+..+.+--   .+.++.+      +
T Consensus       205 ~i~lafysglfa~~GWd~lN~vteEiknP~---ktLP~Ai~isi~lvt~iYil~NvAy~~vls---~~e~l~S~aVav~F  278 (479)
T KOG1287|consen  205 NIALAFYSGLFAFSGWDYLNYVTEEIKNPR---RTLPRAILISIPLVTVIYVLVNVAYFTVLS---PDEILSSDAVAVTF  278 (479)
T ss_pred             HHHHHHHHhhhcccCchhhccchHhhcCcc---ccchHHHHHhhHHHHHHHHHhHhheeEecC---HHHhcccchHHHHH
Confidence            344566667799999888888999999882   789999999999999999998665443321   1222221      1


Q ss_pred             CCC-CChHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHhhhCCCCCCCCCccccCCCCCCcccccchhhhHHHHHHHH
Q 020470          169 GFY-EPYWLIDLANAFIVIHLVGGYQVYSQPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVS  247 (326)
Q Consensus       169 ~~~-~~~~~~~~~~~~~~l~~~~sypl~~~p~~~~le~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~r~~~r~~~v~~  247 (326)
                      .+. .+.+. -+.-++..++.+++.--.++.....+...-+    + .++++-.....    .++ .--+  ...++-.+
T Consensus       279 a~~~~G~~~-~~ip~~ValS~~G~~n~~ifs~SR~~~~~ar----e-G~LP~~~s~i~----~~~-~TP~--~allf~~~  345 (479)
T KOG1287|consen  279 ADRILGVFA-WAIPFSVALSLIGSLNSVIFSSSRLFYAGAR----E-GHLPAFFSMIS----VRR-FTPR--PALLFSGL  345 (479)
T ss_pred             HHHhccchH-HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHH----c-cCccHHHHhhc----CCC-CCCh--HHHHHHHH
Confidence            000 01222 1223334444455433222222222222111    1 11110000000    000 0001  12333445


Q ss_pred             HHHHHHHCCChHHHHHHHhhhhhhhHHHHhhHHHHHHhcCcc
Q 020470          248 VTAIAMSFPYFNQVLGVIGGVIFWPLTIYFPVEMYFKQMNIE  289 (326)
Q Consensus       248 ~~~lAi~iP~~~~v~~lvGa~~~~~l~filP~l~yl~~~~~~  289 (326)
                      ..++..++.|++++++.++=.-.....+.+=+++|+|.++++
T Consensus       346 ~~i~~~~~~d~~~LIny~sf~~~l~~~l~~~gll~lR~k~p~  387 (479)
T KOG1287|consen  346 LSIVLSLIGDFDQLINYVSFAYWLFRGLSMAGLLWLRWKHPP  387 (479)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence            556667778999999999998888899999999999977654

>TIGR01773 GABAperm gamma-aminobutyrate permease

Probab=96.90  E-value=0.13  Score=50.36  Aligned_cols=55  Identities=18%  Similarity=0.133  Sum_probs=45.9

Q ss_pred             HHHHHHHHHHHHhcCCcchhHHHHhhhCCCCcccccHhhhhhhhhhHHHHHhhhhhch
Q 020470           94 WLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGF  151 (326)
Q Consensus        94 ~~~~~~~~~~~faf~~h~~~~~i~~~m~~p~p~~~~~~~v~~~s~~~~~~lY~~~g~~  151 (326)
                      .++..++....|+|.|-......-.|+|||+   |+.+|+...+......+|+.....
T Consensus       201 ~~~~~a~~~~~~af~G~e~~~~~a~E~k~P~---r~iPrAi~~~~~~~~~~y~l~~~~  255 (452)
T TIGR01773       201 GAVLLAILVTMFSFMGTEIVTIAAAESSNPI---KSITRATNSVIWRIIVFYLGSIFI  255 (452)
T ss_pred             HHHHHHHHHHHHHhccHHHHhHHHHhhcChh---hHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3577888899999999999999999999872   579999887788888888875443

GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.

>TIGR00930 2a30 K-Cl cotransporter

Probab=96.87  E-value=0.19  Score=53.89  Aligned_cols=53  Identities=25%  Similarity=0.256  Sum_probs=45.9

Q ss_pred             HHHHHHHHHHhcCCcchhHHHHhhhCCCCcccccHhhhhhhhhhHHHHHhhhhhch
Q 020470           96 VAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGF  151 (326)
Q Consensus        96 ~~~~~~~~~faf~~h~~~~~i~~~m~~p~p~~~~~~~v~~~s~~~~~~lY~~~g~~  151 (326)
                      ++..++++.+||.|-.....+-.|+|||+   +..++....++.+++++|+.+.+.
T Consensus       282 f~~~~ai~F~A~tGi~agan~sgElKnP~---r~IPratl~ai~i~~vlYllv~~~  334 (953)
T TIGR00930       282 FFSLFGIFFPSVTGILAGANISGDLKDPQ---KAIPKGTLLAILTTTVVYLGSVVL  334 (953)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccChh---hhhHHHHHHHHHHHHHHHHHHHHH
Confidence            55677788889999999999999999882   679999999999999999998653

>PRK15238 inner membrane transporter YjeM; Provisional

Probab=96.79  E-value=0.22  Score=49.53  Aligned_cols=54  Identities=19%  Similarity=0.098  Sum_probs=45.4

Q ss_pred             HHHHHHHHHHHHhcCCcchhHHHHhhhCCCCcccccHhhhhhhhhhHHHHHhhhhhc
Q 020470           94 WLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGG  150 (326)
Q Consensus        94 ~~~~~~~~~~~faf~~h~~~~~i~~~m~~p~p~~~~~~~v~~~s~~~~~~lY~~~g~  150 (326)
                      ++...++....|+|.|-......-+|+|||+   |+.+|++..+...+..+|....+
T Consensus       211 ~~~~~~~~~~~~~f~G~e~~~~~a~E~~~p~---~~~p~ai~~~~~~~~~~y~l~~~  264 (496)
T PRK15238        211 IAVLSFVVFAIFAYGGIEAVGGLVDKTENPE---KNFPKGIIIAAIVISIGYSLAIF  264 (496)
T ss_pred             hHHHHHHHHHHHHHHhHHHHHHHHHhccCCC---ccccHHHHHHHHHHHHHHHHHHH
Confidence            3555667778999999999999999999882   67999999999999999987543

>PRK10836 lysine transporter; Provisional

Probab=96.63  E-value=0.36  Score=47.86  Aligned_cols=54  Identities=11%  Similarity=0.177  Sum_probs=44.5

Q ss_pred             HHHHHHHHHHHhcCCcchhHHHHhhhCCCCcccccHhhhhhhhhhHHHHHhhhhhch
Q 020470           95 LVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGF  151 (326)
Q Consensus        95 ~~~~~~~~~~faf~~h~~~~~i~~~m~~p~p~~~~~~~v~~~s~~~~~~lY~~~g~~  151 (326)
                      ..+.+.....|+|.|-......-.|+|||+   |+.+|++..+...+.++|......
T Consensus       206 ~~~~~~~~~~faf~G~e~~~~~a~E~knP~---r~iPrAi~~~~~~v~~~Yvl~~~~  259 (489)
T PRK10836        206 AMIGVAMIVGFSFQGTELIGIAAGESEDPA---KNIPRAVRQVFWRILLFYVFAILI  259 (489)
T ss_pred             HHHHHHHHHHHHHccHHHHHHHHHHhcCHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444555556799999999999999999872   679999999999999999977543

>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]

Probab=96.48  E-value=0.32  Score=47.36  Aligned_cols=61  Identities=16%  Similarity=0.222  Sum_probs=52.1

Q ss_pred             HHHHHHHHHHHhcCCcchhHHHHhhhCCCCcccccHhhhhhhhhhHHHHHhhhhhchhcccccc
Q 020470           95 LVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGD  158 (326)
Q Consensus        95 ~~~~~~~~~~faf~~h~~~~~i~~~m~~p~p~~~~~~~v~~~s~~~~~~lY~~~g~~GY~~fG~  158 (326)
                      ....+++...++|.|-......-+|+|||+   |+.+|....+...+..+|......-....++
T Consensus       202 ~~~~~~~~~~~~f~G~e~~~~~a~E~knp~---r~ip~aii~~~~~~~~~y~~~~~~~~~~~~~  262 (466)
T COG0531         202 GILAAILLAFFAFTGFEAIATLAEEVKNPK---RTIPRAIILSLLIVLILYILGALVIVGVLPA  262 (466)
T ss_pred             HHHHHHHHHHHHhhcHHHHHHHHHHhcCcc---ccccHHHHHHHHHHHHHHHHHHHHHHhCccH
Confidence            566788889999999999999999999872   5689999999999999999988776666665

>TIGR03428 ureacarb_perm permease, urea carboxylase system

Probab=96.07  E-value=1.7  Score=42.93  Aligned_cols=53  Identities=8%  Similarity=-0.150  Sum_probs=41.3

Q ss_pred             HHHHHHHHHHHhcCCcchhHHHHhhhCCCCcccccHhhhhhhhhhHHHHHhhhhhc
Q 020470           95 LVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGG  150 (326)
Q Consensus        95 ~~~~~~~~~~faf~~h~~~~~i~~~m~~p~p~~~~~~~v~~~s~~~~~~lY~~~g~  150 (326)
                      ....+.....|+|.|-......-+|+|||+   |+.+|++..+..+...+|..+-+
T Consensus       214 ~~~~~~~~~~~~f~G~e~~~~~aeE~knP~---r~iPrai~~s~~i~~~~~~~~~~  266 (475)
T TIGR03428       214 AFLVSGLMAAYVMVGFGSAGELSEETKNPR---RVAPRTILTALSVSALGGGLMIL  266 (475)
T ss_pred             HHHHHHHHHHHHhcCcchHHHHHHHhcCcc---hhhhHHHHHHHHHHHHHHHHHHH
Confidence            344456667899999999999999999882   67999999888887765555443

A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.

>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]

Probab=95.40  E-value=1.1  Score=43.70  Aligned_cols=180  Identities=11%  Similarity=0.094  Sum_probs=90.8

Q ss_pred             hhHHHHHHHHHHHHHHhcCCcchhHHHHhhhCCCCcccccHhhhhhh-----hhhHHHHHhhhhhchhcccccccccc--
Q 020470           90 IEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTM-----SIITTTIFYLFCGGFGYAAFGDNTPG--  162 (326)
Q Consensus        90 ~~~~~~~~~~~~~~~faf~~h~~~~~i~~~m~~p~p~~~~~~~v~~~-----s~~~~~~lY~~~g~~GY~~fG~~~~~--  162 (326)
                      +..+.+++.++-+.+|||.+...+=---+|-|||+   |..+|+.+.     ...-...+.....+.-+-.++++.++  
T Consensus       199 P~G~~g~~~~~~~v~Faf~GiElvGitA~Et~dP~---k~ipkAin~V~~RI~iFYvgsl~vi~~l~PW~~~~~~~SPFV  275 (462)
T COG1113         199 PNGFLGFLSALQIVMFAFGGIELVGITAAEAKDPE---KAIPKAINSVIWRILIFYVGSLFVILSLYPWNQIGEDGSPFV  275 (462)
T ss_pred             CCchHHHHHHHHHHHHHHhhHHHHHHHHHhhcChh---hHHHHHHhhhhHHHHHHHHHHHHHHheeccccccCCCCCcHH
Confidence            44566888899999999999999988999999883   456665543     33333444445566666666554433  


Q ss_pred             ccccccCCCCChHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHhh-hCCCCCCCCCccccCCCCCCcccccchhhhHH
Q 020470          163 NLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQPIFAHFEKWICE-KFPENGFLNNEFFLKPPLMPAFRWNPLRLCFR  241 (326)
Q Consensus       163 ~il~n~~~~~~~~~~~~~~~~~~l~~~~sypl~~~p~~~~le~~~~~-~~~~~~~~~~~~~~~~p~~~~~~~~~~r~~~r  241 (326)
                      .++..++   -.+...+.|+......+.+.-=-.+.....+..+-.+ ..|+ .+ .|-.+..+|        +.-+.+.
T Consensus       276 ~~f~~iG---i~~Aa~i~N~VVLtAa~S~~NSglystsRmL~~la~~g~APk-~~-~klsk~gVP--------~~ai~~s  342 (462)
T COG1113         276 TVFSLIG---IPFAAGIMNFVVLTAALSALNSGLYSTSRMLYSLAKQGDAPK-AF-AKLSKRGVP--------VNAILLS  342 (462)
T ss_pred             HHHHHcC---CcccccceeEEEeechhhcccccccccchHHHHHhhcCcccH-hH-hhccccCCC--------HHHHHHH
Confidence            1222222   1111122222222222222111111222333333211 1111 11 110011222        2335567


Q ss_pred             HHHHHHHHHHHHHCCChHHHHHHHhhhhhhhH--HHHhhHHHHHHhcC
Q 020470          242 TVYVVSVTAIAMSFPYFNQVLGVIGGVIFWPL--TIYFPVEMYFKQMN  287 (326)
Q Consensus       242 ~~~v~~~~~lAi~iP~~~~v~~lvGa~~~~~l--~filP~l~yl~~~~  287 (326)
                      .....++.++....|  +.++.++=+.++..+  ...+=.+.|+|.+|
T Consensus       343 ~~~~~~~V~Lny~~P--~~vF~~v~s~s~~~~l~vW~~I~~s~l~~rk  388 (462)
T COG1113         343 AVVLLLGVVLNYILP--EKVFELVTSSSGLGLLFVWLMILLSQLKLRK  388 (462)
T ss_pred             HHHHHHHHHHHhhcc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            777788888899999  666666555443333  23333456666554

>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell

Probab=94.82  E-value=0.086  Score=52.06  Aligned_cols=63  Identities=19%  Similarity=0.153  Sum_probs=51.9

Q ss_pred             HHHHHHHHHHHHHhcCCcchhHHHHhhhCCCCcccccHhhhhhhhhhHHHHHhhhhhchhcccccc
Q 020470           93 MWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGD  158 (326)
Q Consensus        93 ~~~~~~~~~~~~faf~~h~~~~~i~~~m~~p~p~~~~~~~v~~~s~~~~~~lY~~~g~~GY~~fG~  158 (326)
                      +.+++.++....++|.|-......-.|.|||+   |+.+|....+.....++|......-=...|.
T Consensus       199 ~~~~~~~~~~~~~af~G~e~~a~~a~E~k~P~---k~IPra~~~~~~~~~v~y~~~~~~~~~~~~~  261 (478)
T PF00324_consen  199 FSGFFAALVFAFFAFVGFESIAILAEEAKNPR---KTIPRATLLSVLRIGVFYVLTSYALTLAVPY  261 (478)
T ss_pred             hhHHHHhhhhhhcccccccccccccccCCCch---hhhhhHhhhhhhhhhhhhhhhhhhcccccCc
Confidence            55788899999999999999999999999882   6799999999999999998876544444443

A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane

>TIGR00912 2A0309 spore germination protein (amino acid permease)

Probab=93.64  E-value=3.5  Score=38.91  Aligned_cols=56  Identities=21%  Similarity=0.329  Sum_probs=45.7

Q ss_pred             HHHHHhcCCcchhHHHHhhhCCCCcccccHhhhhhhhhhHHHHHhhhhhchhcccccccc
Q 020470          101 GDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNT  160 (326)
Q Consensus       101 ~~~~faf~~h~~~~~i~~~m~~p~p~~~~~~~v~~~s~~~~~~lY~~~g~~GY~~fG~~~  160 (326)
                      +...++|.+.....-...++|||    ++.+|+...+..++..+|...-+..-..+|.+.
T Consensus       186 ~~~~~~f~g~~i~~~~~~~~~~~----~~~~k~~~~~~~~~~~ly~~~~~~~i~~lg~~~  241 (359)
T TIGR00912       186 PVVTFAFGEIEIFFLLFPLLSKK----KKIKKSIIKAIIIGVLLYILTTFVSISVFGGNV  241 (359)
T ss_pred             HHhhhhhHHHHHHHHHHHHhCCh----hhhHHHHHHHHHHHHHHHHHHHHHHHheecHHH
Confidence            46778888877777788889976    789999999999999999988777777777544

This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.

>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]

Probab=92.14  E-value=12  Score=37.32  Aligned_cols=123  Identities=12%  Similarity=0.104  Sum_probs=69.8

Q ss_pred             cCCchhHHHHHHHHHHhhc--CCCCchhh-HHHHHHHHHHHHHHHHHHhhhhhhhhcCCCcccccccccc-CchhhHHHH
Q 020470           20 YSDTYYMLIFGAVQLILSQ--APDFHNIQ-SLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVST-TTSIEKMWL   95 (326)
Q Consensus        20 ~~~~~~~ii~~~~~~pl~~--~~~l~~L~-~~S~~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~   95 (326)
                      .+...|..++.++++.+.+  .|.+.+-- |+|.+=++..+.+.++.++..+ .+.+++. .....-+++ ......+.+
T Consensus       158 v~~~~w~~iF~~~i~~iN~~~Vk~fGE~Efw~s~iKV~~ii~Fii~gii~~~-Gg~~~~~-~ig~~yw~~pg~F~~gf~g  235 (541)
T COG0833         158 VPPWIWIAIFLVLIFLLNLFGVKGFGETEFWFSSIKVLTIIGFIILGIIIIC-GGGPTHG-YIGFNYWHDPGAFAGGFKG  235 (541)
T ss_pred             CChHHHHHHHHHHHHHHHHhcccccceehHHHHHHHHHHHHHHHHHHHHHhc-CCCCCCC-CcceeeecCCCCCCcchHH
Confidence            4667899998888877664  47777666 5565544433332222222111 2222111 000000000 012334567


Q ss_pred             HHHHHHHHHHhcCCcchhHHHHhhhCCCCcccccHhhhhhhhhhHHHHHhhh
Q 020470           96 VAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLF  147 (326)
Q Consensus        96 ~~~~~~~~~faf~~h~~~~~i~~~m~~p~p~~~~~~~v~~~s~~~~~~lY~~  147 (326)
                      +...+-+..|+|+|.-.+----.|=+||+   |..+|+....+-=..++|+.
T Consensus       236 ~~~v~v~a~Fsf~GtElvgiaAgEs~nP~---K~iPkAik~vfwRIl~FYi~  284 (541)
T COG0833         236 FCSVFVIAAFSFSGTELVGLAAGESENPR---KSIPKAIKQVFWRILLFYIL  284 (541)
T ss_pred             HHHHHhhheeeeeceeeeeeeecccCCch---hhhHHHHHHHHHHHHHHHHH
Confidence            77788889999999999988888999873   55677666555555555554

>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism]

Probab=91.72  E-value=3.9  Score=41.29  Aligned_cols=56  Identities=16%  Similarity=0.240  Sum_probs=48.7

Q ss_pred             HHHHHHHHHHHHHhcCCcchhHHHHhhhCCCCcccccHhhhhhhhhhHHHHHhhhhhch
Q 020470           93 MWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGF  151 (326)
Q Consensus        93 ~~~~~~~~~~~~faf~~h~~~~~i~~~m~~p~p~~~~~~~v~~~s~~~~~~lY~~~g~~  151 (326)
                      +.++..++.+..|+|.|--.+-..-.|-|||+   |..+++...++..++.+|....+.
T Consensus       231 f~Gv~s~~~~~~fsf~G~e~va~~a~E~kNP~---k~IP~ai~~s~~ri~~~Yi~~~~~  286 (554)
T KOG1286|consen  231 FKGVLSGAATAFFSFIGFELVATTAEEAKNPR---KAIPKAIKQSLLRILLFYILSSIV  286 (554)
T ss_pred             cceeeHHHHHHHHHHhhHHHHHHHHHhccCCc---ccccHHHHHHHHHHHHHHHHHHHH
Confidence            55777888899999999999999999999883   678999999999999999987554

>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]

Probab=82.83  E-value=56  Score=32.87  Aligned_cols=73  Identities=11%  Similarity=-0.023  Sum_probs=48.6

Q ss_pred             HHHHHHHHHHHHHHhcCCcchhHHHHhhhCCCCcccccHhhhhhhhhhHHHHHhhhhhchhccccccccccccccc
Q 020470           92 KMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTG  167 (326)
Q Consensus        92 ~~~~~~~~~~~~~faf~~h~~~~~i~~~m~~p~p~~~~~~~v~~~s~~~~~~lY~~~g~~GY~~fG~~~~~~il~n  167 (326)
                      .-|.+..++-.-+..+.|--.-..+-.|-||+  + ++-+|.+..+..+..++=..+-+.-.++-+||...-+-.+
T Consensus       250 ~G~afil~f~~~~wt~sGyDa~~H~aEE~~nA--s-k~aPrgIi~s~~i~~i~gw~~~I~i~~~i~~D~~~v~ns~  322 (550)
T KOG1289|consen  250 NGWAFILGFFNPAWTMSGYDAAAHMAEETKNA--S-KAAPRGIISSIAIGFILGWIIIIGIAYTIPDDLDAVLNSS  322 (550)
T ss_pred             chHHHHHhhccceeEEeccCchHHHHHHhcch--h-hhccHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHhcCC
Confidence            34555556666677777777778888899976  2 5778888777777777666666655666676554433334

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	326
3l1l_A	445	Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC	98.21
3gia_A	444	Uncharacterized protein MJ0609; membrane protein,	97.93
4djk_A	511	Probable glutamate/gamma-aminobutyrate antiporter;	97.67

>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A

Probab=98.21  E-value=4e-05  Score=72.98  Aligned_cols=63  Identities=8%  Similarity=0.106  Sum_probs=51.2

Q ss_pred             HHHHHHHHHHHHHhcCCcchhHHHHhhhCCCCcccccHhhhhhhhhhHHHHHhhhhhchhcccccc
Q 020470           93 MWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGD  158 (326)
Q Consensus        93 ~~~~~~~~~~~~faf~~h~~~~~i~~~m~~p~p~~~~~~~v~~~s~~~~~~lY~~~g~~GY~~fG~  158 (326)
                      ..++..++....|+|.|.........|+|||   +|+.+|+...+..++.++|......-....+.
T Consensus       190 ~~~~~~~~~~~~~af~G~e~~~~~~~e~k~p---~r~ip~a~~~~~~~~~~~y~~~~~~~~~~~~~  252 (445)
T 3l1l_A          190 FGAIQSTLNVTLWSFIGVESASVAAGVVKNP---KRNVPIATIGGVLIAAVCYVLSTTAIMGMIPN  252 (445)
T ss_dssp             ---HHHHHHHHHHTTTTTTHHHHGGGGBSSH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCT
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHhcCc---cccccHHHHHHHHHHHHHHHHHHHHHHhcCCH
Confidence            4466778889999999999999999999986   26799999999999999999987765555543

>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C

Probab=97.93  E-value=0.00032  Score=66.69  Aligned_cols=63  Identities=11%  Similarity=0.105  Sum_probs=51.6

Q ss_pred             HHHHHHHHHHHHHHhcCCcchhHHHHhhhCCCCcccccHhhhhhhhhhHHHHHhhhhhchhccccc
Q 020470           92 KMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFG  157 (326)
Q Consensus        92 ~~~~~~~~~~~~~faf~~h~~~~~i~~~m~~p~p~~~~~~~v~~~s~~~~~~lY~~~g~~GY~~fG  157 (326)
                      .+.+.+.+++...|+|.|.........|+|||   +|+.+|++..+..++.++|....+.-....+
T Consensus       186 g~~~~~~~~~~~~~a~~G~e~~~~~~~e~k~P---~r~ip~ai~~~~~~~~~~y~~~~~~~~~~~~  248 (444)
T 3gia_A          186 AVSGMIFASAIFFLSYMGFGVITNASEHIENP---KKNVPRAIFISILIVMFVYVGVAISAIGNLP  248 (444)
T ss_dssp             HHHHHHHHHHHGGGGGTHHHHHHTTGGGBSSH---HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred             chHHHHHHHHHHHHHHHhHHHHHHHHHHccCc---ccchhHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            44567778888899999999999999999987   1569999999999999999987665444444

>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A

Probab=97.67  E-value=0.0015  Score=63.13  Aligned_cols=59  Identities=8%  Similarity=-0.009  Sum_probs=49.5

Q ss_pred             HHHHHHHHhcCCcchhHHHHhhhCCCCcccccHhhhhhhhhhHHHHHhhhhhchhccccccc
Q 020470           98 QALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDN  159 (326)
Q Consensus        98 ~~~~~~~faf~~h~~~~~i~~~m~~p~p~~~~~~~v~~~s~~~~~~lY~~~g~~GY~~fG~~  159 (326)
                      .++....|+|.|.......-+|+|||+   |+.+|++..+..++.++|+...+.-....+++
T Consensus       205 ~~~~~~~~a~~G~e~~~~~a~E~k~P~---k~ip~ai~~~~~~~~~~y~~~~~~~~~~~~~~  263 (511)
T 4djk_A          205 VVFVAFILSYMGVEASATHVNEMSNPG---RDYPLAMLLLMVAAICLSSVGGLSIAMVIPGN  263 (511)
T ss_dssp             TTHHHHHHHHTTGGGGTGGGSSSSCCT---TTHHHHHHHHHHHHHHHHHHHHHHHHTTSCTT
T ss_pred             HHHHHHHHHHhhHHHHHHHHHhccCcc---cchhHHHHHHHHHHHHHHHHHHHHHHeecCHh
Confidence            346678899999999999999999872   67999999999999999999877666666544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00