Citrus Sinensis ID: 020491

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-----
Protein Sequence
MREPSMMVRETAAEQLEERQSDWAYSKPVVVLDIIWNLAFVAVAFSVMVLSQNERPNMPLRLWIVGYAIQCVLHMVCVCVEYKRRSRRRVSAFGGAEEGNLNSGTTRGDSGEYVSLANQLEEEGTSSVAKHLESANTMFSFIWWIIGFYWVSAGGQALARDSPLLYWLCIIFLGFDVFFVVFCVALACIIGIAVCCCLPCIIAILYAVADQQEGASKEDIERLSKFKFRRMVDTEKLSDDGQGSQGGIMTECGTETPNEHVLSNEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILKSSSNQDREEV
Secondary Structure (PSIPRED)
cccccHHHHHHHHHHHHHHHHcccccccEEEHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHEEEEEEEEEEEEEEEcccccccccccccccccccccccccHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHcEEEEcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHccccEEEcccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccccHHHHHccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccHHHHHHHHHHHHHHcccccccccEEHHHHHHHHHHHHHHHHHHHHcccccccccHEEEEEEHHHHHHEEEHHEHHHHHHHcccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcHEEEEccccccHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHcccEEEEEcccccccccccccccccEEEEEcccccccEccccccccEEEEEEccccccEEEEccccccHHHHHHHHHHHHHccccHHHHHHHccccccccccc
Coil and Loop (DISEMBL)
MREPSMMVRETAAEQLEErqsdwayskpVVVLDIIWNLAFVAVAFSVMVLsqnerpnmplRLWIVGYAIQCVLHMVCVCVEYkrrsrrrvsafggaeegnlnsgttrgdsgeYVSLANQLEEEGTSSVAKHLESANTMFSFIWWIIGFYWVSaggqalardspLLYWLCIIFLGFDVFFVVFCVALACIIGIAVCCCLPCIIAILYAVAdqqegaskeDIERLSKFKFRrmvdteklsddgqgsqggimtecgtetpnehvlsnedaecciclsayddgvelrelpcghhfhcacvdkwlyinatcplckynilksssnqdreev
Flexible Loop (DISEMBL)
MREPSMMVRETAAEQLeerqsdwaySKPVVVLDIIWNLAFVAVAFSVMVLSQNERPNMPLRLWIVGYAIQCVLHMVCVCVEYKRRSRRRvsafggaeegnlnsgttrgdsGEYVSLANQLEEEGTSSVAKHLESANTMFSFIWWIIGFYWVSAGGQALARDSPLLYWLCIIFLGFDVFFVVFCVALACIIGIAVCCCLPCIIAILYAVADQQEGASKEDIERLSkfkfrrmvdteklsddgqgsqgGIMTECGTETPNEHVLSNEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNilksssnqdreev
Low Complexity Region (SEG)
MREPSMMVRETAAEQLEERQSDWAYSKPVVVLDIIWNLAFVAVAFSVMVLSQNERPNMPLRLWIVGYAIQCVLHMVCVCVEYKRRSRRRVSAFGGAEEGNLNSGTTRGDSGEYVSLANQLEEEGTSSVAKHLESANTMFSFIWWIIGFYWVSAGGQALARDSPLLYWLCIIFLGfdvffvvfcvALACIIGIAVCCCLPCIIAILYAVADQQEGASKEDIERLSKFKFRRMVDTEKLSDDGQGSQGGIMTECGTETPNEHVLSNEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILKSSSNQDREEV
Disordered region (IsUnstruct)
*********************DWAYSKPVVVLDIIWNLAFVAVAFSVMVLSQNERPNMPLRLWIVGYAIQCVLHMVCVCVEYKR*************************************************SANTMFSFIWWIIGFYWVSAGGQALARDSPLLYWLCIIFLGFDVFFVVFCVALACIIGIAVCCCLPCIIAILYAVAD**************************************************VLSNEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNIL***********
Disordered Region (DISOPRED)
***********************AYSKPVVVLDIIWNLAFVAVAFSVMVLSQNERPNMPLRLWIVGYAIQCVLHMVCVCVEYKRR****************************************SSVAKHLESANTMFSFIWWIIGFYWVSAGGQALARDSPLLYWLCIIFLGFDVFFVVFCVALACIIGIAVCCCLPCIIAILY********************KFRR********************************SNEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLC****************
Disordered Region (DISEMBL)
*******************QSDWAYSKPVVVLDIIWNLAFVAVAFSVMVLSQNERPNMPLRLWIVGYAIQCVLHMVCVCVEYKRRSRRRVSAFGGAEEGNLNSGTTRGDSGEYVSLANQLEEEGTSSVAKHLESANTMFSFIWWIIGFYWVSAGGQALARDSPLLYWLCIIFLGFDVFFVVFCVALACIIGIAVCCCLPCIIAILYAVADQ********IERLSKFKFRRMVDTEK*********GGIMTECGTETPNEHVLSNEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILKS*********
Disordered Region (DISPRO)
******************RQSDWAYSKPVVVLDIIWNLAFVAVAFSVMVLSQNERPNMPLRLWIVGYAIQCVLHMVCVCVEYKRRSR************************************GTSSVAKHLESANTMFSFIWWIIGFYWVSAGGQALARDSPLLYWLCIIFLGFDVFFVVFCVALACIIGIAVCCCLPCIIAILYAVADQQEGASKEDIERLSKFKFRRMV*************GGIMTECG*ETPNEHVLSNEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILK**********
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MREPSMMVRETAAEQLEERQSDWAYSKPVVVLDIIWNLAFVAVAFSVMVLSQNERPNMPLRLWIVGYAIQCVLHMVCVCVEYKRRSRRRVSAFGGAEEGNLNSGTTRGDSGEYVSLANQLEEEGTSSVAKHLESANTMFSFIWWIIGFYWVSAGGQALARDSPLLYWLCIIFLGFDVFFVVFCVALACIIGIAVCCCLPCIIAILYAVADQQEGASKEDIERLSKFKFRRMVDTEKLSDDGQGSQGGIMTECGTETPNEHVLSNEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILKSSSNQDREEV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	325	2.2.26 [Sep-21-2011]
Q93Z92	390	E3 ubiquitin-protein liga	yes	no	0.947	0.789	0.725	1e-123
Q9LN71	408	E3 ubiquitin-protein liga	no	no	0.981	0.781	0.711	1e-123
Q8LDB8	381	E3 ubiquitin-protein liga	no	no	0.984	0.839	0.697	1e-116
Q8GUU2	359	E3 ubiquitin protein liga	no	no	0.947	0.857	0.509	3e-84
Q5SSZ7	913	E3 ubiquitin-protein liga	yes	no	0.424	0.151	0.335	7e-14
Q9ULT6	936	E3 ubiquitin-protein liga	yes	no	0.403	0.139	0.337	4e-12
Q4KLR8	784	E3 ubiquitin-protein liga	N/A	no	0.390	0.161	0.346	9e-12
E9QAU8	347	RING finger protein 165 O	no	no	0.249	0.233	0.359	1e-11
Q6ZSG1	346	RING finger protein 165 O	no	no	0.249	0.234	0.359	2e-11
Q9WTV7	600	E3 ubiquitin-protein liga	no	no	0.147	0.08	0.458	3e-11

>sp|Q93Z92|RING4_ARATH E3 ubiquitin-protein ligase At4g11680 OS=Arabidopsis thaliana GN=At4g11680 PE=2 SV=1

 Score =  441 bits (1135), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 233/321 (72%), Positives = 268/321 (83%), Gaps = 13/321 (4%)

Query: 1   MREPSMMVRETAAEQLEERQSDWAYSKPVVVLDIIWNLAFVAVAFSVMVLSQNERPNMPL 60
           MREPSM+VRETAAEQLEERQSDWAYSKPVV LDI+WNLAFVA+  +V++LS++E+PNMPL
Sbjct: 81  MREPSMLVRETAAEQLEERQSDWAYSKPVVFLDILWNLAFVAIGVAVLILSRDEKPNMPL 140

Query: 61  RLWIVGYAIQCVLHMVCVCVEYKRRSRRRVSAFGGAEEGNLNSGTTRGDSGEYVSLANQL 120
           R+W+VGY IQC LHM CVCVEY+RR RRR    GG       SG T   S +YVSLA QL
Sbjct: 141 RVWVVGYGIQCWLHMACVCVEYRRRRRRRHPEDGGG------SGLTNSSSQQYVSLA-QL 193

Query: 121 EEEG-TSSVAKHLESANTMFSFIWWIIGFYWVSAGGQALARDSPLLYWLCIIFLGFDVFF 179
           E+ G TS+ AKHLESANTMFSFIWWIIGFYWVSAGGQ L+ DSP LYWLCIIFLGFDVFF
Sbjct: 194 EDRGETSNPAKHLESANTMFSFIWWIIGFYWVSAGGQTLSSDSPQLYWLCIIFLGFDVFF 253

Query: 180 VVFCVALACIIGIAVCCCLPCIIAILYAVADQQEGASKEDIERLSKFKFRRMVDTEKLSD 239
           VVFCVALAC+IG+AVCCCLPCIIAILYAVAD QEGASK DI+++ KF+F +  + EKLS 
Sbjct: 254 VVFCVALACVIGLAVCCCLPCIIAILYAVAD-QEGASKNDIDQMPKFRFTKTGNVEKLS- 311

Query: 240 DGQGSQGGIMTECGTETPNEHVLSNEDAECCICLSAYDDGVELRELPCGHHFHCACVDKW 299
              G   GIMTECGT++P E  LS EDAECCICL  Y+DGVELRELPC HHFHC C+DKW
Sbjct: 312 ---GKARGIMTECGTDSPIERSLSPEDAECCICLCEYEDGVELRELPCNHHFHCTCIDKW 368

Query: 300 LYINATCPLCKYNILKSSSNQ 320
           L+IN+ CPLCK+NILK+++N+
Sbjct: 369 LHINSRCPLCKFNILKNANNE 389

Mediates E2-dependent protein ubiquitination in vitro.
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -

>sp|Q9LN71|RING1_ARATH E3 ubiquitin-protein ligase At1g12760 OS=Arabidopsis thaliana GN=At1g12760 PE=2 SV=1

 Score =  441 bits (1135), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 244/343 (71%), Positives = 282/343 (82%), Gaps = 24/343 (6%)

Query: 1   MREPSMMVRETAAEQLEERQSDWAYSKPVVVLDIIWNLAFVAVAFSVMVLSQNERPNMPL 60
           MREPSM+VRE AAEQLEERQSDWAYSKPVVVLDI+WNLAFV+VA +++V+S+ E P MPL
Sbjct: 72  MREPSMLVREAAAEQLEERQSDWAYSKPVVVLDIVWNLAFVSVATAILVMSRKEHPIMPL 131

Query: 61  RLWIVGYAIQCVLHMVCVCVEYKRRSRRRVSAFGGA-----------------EEGNLNS 103
           R+W++GYA+QCVLHMVCVCVEY+RR+RRR +                      EE  L  
Sbjct: 132 RVWLLGYALQCVLHMVCVCVEYRRRNRRRTNRTTTTTPPRSRSSSSSSSSSSLEEEAL-- 189

Query: 104 GTTRGDSGEYVSLANQLEEEGTSSVAKHLESANTMFSFIWWIIGFYWVSAGGQALARDSP 163
           G+ R    + +SL + L+ E +SSVAKHLESANTMFSFIWWIIGFYWVSAGGQ LA++SP
Sbjct: 190 GSRRNSGVQDLSLGH-LDTE-SSSVAKHLESANTMFSFIWWIIGFYWVSAGGQELAQESP 247

Query: 164 LLYWLCIIFLGFDVFFVVFCVALACIIGIAVCCCLPCIIAILYAVADQQEGASKEDIERL 223
            +YWL I+FLGFDVFFVVFCVALAC+IGIAVCCCLPCIIA+LYAVAD QEGASKEDIE+L
Sbjct: 248 RIYWLSIVFLGFDVFFVVFCVALACVIGIAVCCCLPCIIAVLYAVAD-QEGASKEDIEQL 306

Query: 224 SKFKFRRMVDTEK-LSDDGQGSQGGIMTECGTETPNEHVLSNEDAECCICLSAYDDGVEL 282
           +KFKFR++ D  K  +D+ QG+  GIMTECGT++P EH L  EDAECCICLSAY+DG EL
Sbjct: 307 TKFKFRKLGDANKHTNDEAQGTTEGIMTECGTDSPIEHTLLQEDAECCICLSAYEDGTEL 366

Query: 283 RELPCGHHFHCACVDKWLYINATCPLCKYNILKSSSNQDREEV 325
           RELPCGHHFHC+CVDKWLYINATCPLCKYNILK SSN DREEV
Sbjct: 367 RELPCGHHFHCSCVDKWLYINATCPLCKYNILK-SSNLDREEV 408

Mediates E2-dependent protein ubiquitination in vitro.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q8LDB8|RING2_ARATH E3 ubiquitin-protein ligase At1g63170 OS=Arabidopsis thaliana GN=At1g63170 PE=2 SV=2

 Score =  417 bits (1073), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 238/341 (69%), Positives = 274/341 (80%), Gaps = 21/341 (6%)

Query: 1   MREPSMMVRETAAEQLEERQSDWAYSKPVVVLDIIWNLAFVAVAFSVMVLSQNERPNMPL 60
           MREPSM+VRE AAEQLEERQSDWAYSKPVVVLD +WNLAFV VA +V+VLS +E PNMPL
Sbjct: 46  MREPSMLVREAAAEQLEERQSDWAYSKPVVVLDFVWNLAFVVVATAVLVLSSDENPNMPL 105

Query: 61  RLWIVGYAIQCVLHMVCVCVEYKRRSRRRVSAFGGA-------------EEGNLNSGTTR 107
           R+WI+GY +QC++HMVCVCVEY+RR+ RR                    EE  L  G +R
Sbjct: 106 RVWIIGYGLQCMMHMVCVCVEYRRRNSRRRRDLSPRSSSSSSSSSSSMDEEEGL--GLSR 163

Query: 108 GDSGEYVSLANQLEEEGTSSVAKHLESANTMFSFIWWIIGFYWVSAGGQALARDSPLLYW 167
                Y+ L  QLE E  +S AKHLESANTM SFIWW+IGFYWVS+GGQ LA+ SP LYW
Sbjct: 164 NSDERYLELG-QLENE-NNSFAKHLESANTMISFIWWVIGFYWVSSGGQELAQGSPQLYW 221

Query: 168 LCIIFLGFDVFFVVFCVALACIIGIAVCCCLPCIIAILYAVADQQEGASKEDIERLSKFK 227
           LCI+FLGFDVFFVVFCVALAC+IGIAVCCCLPCIIA+LYAVA +QEGASKEDI++L+KFK
Sbjct: 222 LCIVFLGFDVFFVVFCVALACVIGIAVCCCLPCIIAVLYAVA-EQEGASKEDIDQLTKFK 280

Query: 228 FRRMVDTEKLSDD---GQGSQGGIMTECGTETPNEHVLSNEDAECCICLSAYDDGVELRE 284
           FR++ DT K + D   GQG  GG+MTECGT++P EH L +EDAECCICLSAY+D  ELRE
Sbjct: 281 FRKVGDTMKHTVDEEQGQGDSGGVMTECGTDSPVEHALPHEDAECCICLSAYEDETELRE 340

Query: 285 LPCGHHFHCACVDKWLYINATCPLCKYNILKSSSNQDREEV 325
           LPCGHHFHC CVDKWLYINATCPLCKYNILKSS+ ++ EEV
Sbjct: 341 LPCGHHFHCGCVDKWLYINATCPLCKYNILKSSNYEEGEEV 381

Mediates E2-dependent protein ubiquitination.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q8GUU2|RIE1_ARATH E3 ubiquitin protein ligase RIE1 OS=Arabidopsis thaliana GN=RIE1 PE=2 SV=1

 Score =  311 bits (798), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 163/320 (50%), Positives = 201/320 (62%), Gaps = 12/320 (3%)

Query: 2   REPSMMVRETAAEQLEERQSDWAYSKPVVVLDIIWNLAFVAVAFSVMVLSQNERPNMPLR 61
           R PSM+VRETAA  LEER+ DW YSKPVV  DI+WN A V  +  ++V +  ERPN P+R
Sbjct: 50  RAPSMLVRETAARALEERRIDWGYSKPVVAADILWNAALVLASAVMLVGTVEERPNEPIR 109

Query: 62  LWIVGYAIQCVLHMVCVCVEYKRR-SRRRVSAFGGAEEGNLNSGTTRGDSGEYVSLANQL 120
           +WI  Y +QC+ H+V V  EY RR S RR       +  + N         EY    +  
Sbjct: 110 VWICVYGLQCLFHVVLVWSEYWRRNSTRRARDLESYDHEDYNI--------EYDYEQDSD 161

Query: 121 EEEGTSSVAKHLESANTMFSFIWWIIGFYWVSAGGQALARDSPLLYWLCIIFLGFDVFFV 180
           +   T S  K  ES NT+ SFIWWIIGFYWV  GG  L  ++P LYWL +IFL  DVFF 
Sbjct: 162 DNSTTYSFVKRCESINTVISFIWWIIGFYWVVEGGDKLLGEAPNLYWLSVIFLAIDVFFA 221

Query: 181 VFCVALACIIGIAVCCCLPCIIAILYAVADQQEGASKEDIERLSKFKFRRMVDTEKLSDD 240
           VFCV LAC++GIA+CCCLPCIIA+LYAVA   EG S+ ++  L  +KF+     EK +  
Sbjct: 222 VFCVVLACLVGIALCCCLPCIIALLYAVAG-TEGVSEAELGVLPLYKFKAFHSNEK-NIT 279

Query: 241 GQGSQGGIMTECGTETPNEHVLSNEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWL 300
           G G    I    G     E  L  EDA+CCICLS+Y+DG EL  LPC HHFH  C+ KWL
Sbjct: 280 GPGKMVPIPIN-GLCLATERTLLAEDADCCICLSSYEDGAELHALPCNHHFHSTCIVKWL 338

Query: 301 YINATCPLCKYNILKSSSNQ 320
            + ATCPLCKYNILK +++Q
Sbjct: 339 KMRATCPLCKYNILKGTTDQ 358

Probable E3 ubiquitin-protein ligase required for embryo development.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q5SSZ7|ZNRF3_MOUSE E3 ubiquitin-protein ligase ZNRF3 OS=Mus musculus GN=Znrf3 PE=2 SV=1

 Score = 78.6 bits (192), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 55/164 (33%), Positives = 79/164 (48%), Gaps = 26/164 (15%)

Query: 156 QALARDSPLLYWLCIIFLGFDVFFVVFCVALACIIGIAVCCCLPCIIAILYAVADQQEGA 215
           Q L    P  Y+   IFL    FFVV  V+L C+I             +L  +  +Q   
Sbjct: 203 QHLPPRQPTEYFDMGIFL---AFFVV--VSLVCLI-------------LLVKIKLKQR-R 243

Query: 216 SKEDIERLSKFKFRRMVDTEKLSDDGQGSQGGIMTECGTETPNEHVLSNEDAECCICLSA 275
           S+  + RL+     +M +T K +   +G + G    CG     + + S   ++C ICL  
Sbjct: 244 SQNSMNRLAVQALEKM-ETRKFNSKSKGRREG---SCGAL---DTLSSGSTSDCAICLEK 296

Query: 276 YDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILKSSSN 319
           Y DG ELR +PC H FH  CVD WL  + TCP C++NI++   N
Sbjct: 297 YIDGEELRVIPCTHRFHRKCVDPWLLQHHTCPHCRHNIIEQKGN 340

Mus musculus (taxid: 10090)

>sp|Q9ULT6|ZNRF3_HUMAN E3 ubiquitin-protein ligase ZNRF3 OS=Homo sapiens GN=ZNRF3 PE=1 SV=3

 Score = 72.4 bits (176), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 53/157 (33%), Positives = 77/157 (49%), Gaps = 26/157 (16%)

Query: 163 PLLYWLCIIFLGFDVFFVVFCVALACIIGIAVCCCLPCIIAILYAVADQQEGASKEDIER 222
           P  Y+   IFL    FFVV  V+L C+I             +L  +  +Q   S+  + R
Sbjct: 213 PTEYFDMGIFL---AFFVV--VSLVCLI-------------LLVKIKLKQR-RSQNSMNR 253

Query: 223 LSKFKFRRMVDTEKLSDDGQGSQGGIMTECGTETPNEHVLSNEDAECCICLSAYDDGVEL 282
           L+     +M +T K +   +G + G    CG       + S+  ++C ICL  Y DG EL
Sbjct: 254 LAVQALEKM-ETRKFNSKSKGRREG---SCGALD---TLSSSSTSDCAICLEKYIDGEEL 306

Query: 283 RELPCGHHFHCACVDKWLYINATCPLCKYNILKSSSN 319
           R +PC H FH  CVD WL  + TCP C++NI++   N
Sbjct: 307 RVIPCTHRFHRKCVDPWLLQHHTCPHCRHNIIEQKGN 343

Homo sapiens (taxid: 9606)

>sp|Q4KLR8|ZNRF3_XENLA E3 ubiquitin-protein ligase ZNRF3 OS=Xenopus laevis GN=znrf3 PE=2 SV=1

 Score = 71.2 bits (173), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 53/153 (34%), Positives = 75/153 (49%), Gaps = 26/153 (16%)

Query: 163 PLLYWLCIIFLGFDVFFVVFCVALACIIGIAVCCCLPCIIAILYAVADQQEGASKEDIER 222
           P  Y+   IFL    FFVV  V+L C+I +           I       Q   ++  ++ 
Sbjct: 122 PTEYFDMGIFL---AFFVV--VSLVCLILLI---------KIKLKQRRSQNSMNRMAVQA 167

Query: 223 LSKFKFRRMVDTEKLSDDGQGSQGGIMTECGTETPNEHVLSNEDAECCICLSAYDDGVEL 282
           L K + R+     K+S   +GS GG+ T          + S+  ++C ICL  Y DG EL
Sbjct: 168 LEKMETRKFKAKGKVSR--EGSCGGLDT----------LSSSSISDCAICLEKYIDGEEL 215

Query: 283 RELPCGHHFHCACVDKWLYINATCPLCKYNILK 315
           R +PC H FH  CVD WL  N TCP C++NI++
Sbjct: 216 RVIPCTHRFHKRCVDPWLLQNHTCPHCRHNIIE 248

E3 ubiquitin-protein ligase that acts as a negative regulator of the Wnt signaling pathway by mediating the ubiquitination and subsequent degradation of Wnt receptor complex components.

Xenopus laevis (taxid: 8355)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|E9QAU8|RN165_MOUSE RING finger protein 165 OS=Mus musculus GN=Rnf165 PE=2 SV=1

 Score = 71.2 bits (173), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 37/103 (35%), Positives = 55/103 (53%), Gaps = 22/103 (21%)

Query: 214 GASKEDIERLS---KFKFRRMVDTEKLSDDGQGSQGGIMTECGTETPNEHVLSNEDAECC 270
           GA +  IER +   K+K RR  D++   D+G+ S                   + D +C 
Sbjct: 256 GAVQNTIERFTFPHKYKKRRPQDSKGKKDEGEES-------------------DTDEKCT 296

Query: 271 ICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNI 313
           ICLS  +DG ++R LPC H FH  CVD+WL ++  CP+C+ +I
Sbjct: 297 ICLSMLEDGEDVRRLPCMHLFHQLCVDQWLAMSKKCPICRVDI 339

Mus musculus (taxid: 10090)

>sp|Q6ZSG1|RN165_HUMAN RING finger protein 165 OS=Homo sapiens GN=RNF165 PE=1 SV=1

 Score = 69.7 bits (169), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 37/103 (35%), Positives = 54/103 (52%), Gaps = 22/103 (21%)

Query: 214 GASKEDIERLS---KFKFRRMVDTEKLSDDGQGSQGGIMTECGTETPNEHVLSNEDAECC 270
           GA +  IER +   K+K RR  D +   D+G+ S                   + D +C 
Sbjct: 255 GAVQNTIERFTFPHKYKKRRPQDGKGKKDEGEES-------------------DTDEKCT 295

Query: 271 ICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNI 313
           ICLS  +DG ++R LPC H FH  CVD+WL ++  CP+C+ +I
Sbjct: 296 ICLSMLEDGEDVRRLPCMHLFHQLCVDQWLAMSKKCPICRVDI 338

Homo sapiens (taxid: 9606)

>sp|Q9WTV7|RNF12_MOUSE E3 ubiquitin-protein ligase RLIM OS=Mus musculus GN=Rlim PE=1 SV=2

 Score = 69.3 bits (168), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 22/48 (45%), Positives = 35/48 (72%)

Query: 269 CCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILKS 316
           C +C++ Y +G +LR+LPC H +H  C+D+WL  N+TCP+C+  +L S
Sbjct: 546 CSVCITEYTEGNKLRKLPCSHEYHVHCIDRWLSENSTCPICRRAVLSS 593

E3 ubiquitin-protein ligase. Acts as a negative coregulator for LIM homeodomain transcription factors by mediating the ubiquitination and subsequent degradation of LIM cofactors LDB1 and LDB2 and by mediating the recruitment the SIN3a/histone deacetylase corepressor complex. Ubiquitination and degradation of LIM cofactors LDB1 and LDB2 allows DNA-bound LIM homeodomain transcription factors to interact with other protein partners such as RLIM. Plays a role in telomere length-mediated growth suppression by mediating the ubiquitination and degradation of TERF1. Acts as an activator of random inactivation of X chromosome in the embryo, a stochastic process in which one X chromosome is inactivated to minimize sex-related dosage differences of X-encoded genes in somatic cells of female placental mammals.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	325
255537347	383	cleavage and polyadenylation specificity	0.984	0.835	0.815	1e-141
356565289	379	PREDICTED: E3 ubiquitin-protein ligase A	0.972	0.833	0.737	1e-137
449460475	383	PREDICTED: E3 ubiquitin-protein ligase A	0.987	0.838	0.772	1e-137
356514046	380	PREDICTED: E3 ubiquitin-protein ligase A	0.981	0.839	0.746	1e-134
356539808	387	PREDICTED: E3 ubiquitin-protein ligase A	0.990	0.832	0.740	1e-127
359474241	383	PREDICTED: E3 ubiquitin-protein ligase A	0.981	0.832	0.782	1e-127
357481703	387	E3 ubiquitin-protein ligase [Medicago tr	0.987	0.829	0.752	1e-126
359474243	392	PREDICTED: E3 ubiquitin-protein ligase A	0.984	0.816	0.767	1e-126
356497216	385	PREDICTED: E3 ubiquitin-protein ligase A	0.981	0.828	0.756	1e-125
225453718	382	PREDICTED: E3 ubiquitin-protein ligase A	0.966	0.821	0.704	1e-124

>gi|255537347|ref|XP_002509740.1| cleavage and polyadenylation specificity factor, putative [Ricinus communis] gi|223549639|gb|EEF51127.1| cleavage and polyadenylation specificity factor, putative [Ricinus communis]

 Score =  508 bits (1307), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 266/326 (81%), Positives = 294/326 (90%), Gaps = 6/326 (1%)

Query: 3   EPSMMVRETAAEQLEERQSDWAYSKPVVVLDIIWNLAFVAVAFSVMVLSQNERPNMPLRL 62
           EPSM+VRETAAEQLEERQSDWAYSKPVV+LDI+WN AFVAVA  V+++S+ E P+MPLRL
Sbjct: 61  EPSMLVRETAAEQLEERQSDWAYSKPVVILDILWNFAFVAVAIGVLIMSRKEDPSMPLRL 120

Query: 63  WIVGYAIQCVLHMVCVCVEYKRRSRRRVS-AFGGAEEGNLNSGTTRGDSGEYVSLANQLE 121
           WIVGY +QCVLHMVCVCVEY+RR RRR    FG   +GNL+SG+ RGDSGEYV+LA   +
Sbjct: 121 WIVGYGLQCVLHMVCVCVEYRRRRRRRRRVGFGIGSDGNLSSGS-RGDSGEYVTLAQLED 179

Query: 122 EEGTSSVAKHLESANTMFSFIWWIIGFYWVSAGGQALARDSPLLYWLCIIFLGFDVFFVV 181
            +GTSSVAKHLESANTMFSFIWWIIGFYWVSAGGQAL+ +SP LYWLCIIFLGFDVFFVV
Sbjct: 180 HDGTSSVAKHLESANTMFSFIWWIIGFYWVSAGGQALSHNSPQLYWLCIIFLGFDVFFVV 239

Query: 182 FCVALACIIGIAVCCCLPCIIAILYAVADQQEGASKEDIERLSKFKFRRMVDTEKLSDDG 241
           FCVALACIIGIAVCCCLPCIIAILYAVAD QEGASKEDIE+LSKFKFRR+ + EKL+ +G
Sbjct: 240 FCVALACIIGIAVCCCLPCIIAILYAVAD-QEGASKEDIEQLSKFKFRRVDNDEKLTGNG 298

Query: 242 --QGSQGGIMTECGTETPNEHVLSNEDAECCICLSAYDDGVELRELPCGHHFHCACVDKW 299
             QG  GG+MTECGT++P EH+LS EDAECCICLSAYDDGVELRELPCGHHFHCACVDKW
Sbjct: 299 DEQGPLGGVMTECGTDSPVEHILSEEDAECCICLSAYDDGVELRELPCGHHFHCACVDKW 358

Query: 300 LYINATCPLCKYNILKSSSNQDREEV 325
           LYINATCPLCKYNILKSSS +DREEV
Sbjct: 359 LYINATCPLCKYNILKSSS-RDREEV 383

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356565289|ref|XP_003550874.1| PREDICTED: E3 ubiquitin-protein ligase At4g11680-like [Glycine max]

 Score =  494 bits (1272), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 241/327 (73%), Positives = 275/327 (84%), Gaps = 11/327 (3%)

Query: 1   MREPSMMVRETAAEQLEERQSDWAYSKPVVVLDIIWNLAFVAVAFSVMVLSQNERPNMPL 60
           MREPSM+VRE AAEQLEERQSDWAYSKPVVVLDI+WN AFVA A +V+VLS+NE PNMPL
Sbjct: 59  MREPSMVVREAAAEQLEERQSDWAYSKPVVVLDILWNCAFVAAAATVLVLSRNENPNMPL 118

Query: 61  RLWIVGYAIQCVLHMVCVCVEYKRRSRRR----VSAFGGAEEGNLNSGTTRGDSGEYVSL 116
           RLWIVGYA+Q VLH+ CVCVEY+RR R R     +A  G   G+L+S +  G SG YVS 
Sbjct: 119 RLWIVGYALQSVLHVACVCVEYRRRLRHREHSNAAAVSGDGSGDLSSPSMDG-SGHYVSF 177

Query: 117 ANQLEEEGTSSVAKHLESANTMFSFIWWIIGFYWVSAGGQALARDSPLLYWLCIIFLGFD 176
               +++G S +AKHLESANTMFSFIWW++GFYWVSA  +AL +DSPLLYWLCI FLGFD
Sbjct: 178 ----DDDGIS-MAKHLESANTMFSFIWWVVGFYWVSADSEALVQDSPLLYWLCIAFLGFD 232

Query: 177 VFFVVFCVALACIIGIAVCCCLPCIIAILYAVADQQEGASKEDIERLSKFKFRRMVDTEK 236
           VFFVVFC+ALACIIGIAVCCCLPCIIA+LYAVADQ EGASKEDIE+LSKFKF+R    EK
Sbjct: 233 VFFVVFCIALACIIGIAVCCCLPCIIALLYAVADQ-EGASKEDIEQLSKFKFQRTETNEK 291

Query: 237 LSDDGQGSQGGIMTECGTETPNEHVLSNEDAECCICLSAYDDGVELRELPCGHHFHCACV 296
            + + QG+ GGIM EC  ++P EHVLS+EDAECCICLSAYDDGVELR+LPC HHFHCACV
Sbjct: 292 HAGNTQGAAGGIMIECDADSPIEHVLSDEDAECCICLSAYDDGVELRKLPCSHHFHCACV 351

Query: 297 DKWLYINATCPLCKYNILKSSSNQDRE 323
           DKWL+INATCPLCKYNILKS+S+   E
Sbjct: 352 DKWLHINATCPLCKYNILKSTSHGQDE 378

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449460475|ref|XP_004147971.1| PREDICTED: E3 ubiquitin-protein ligase At1g12760-like [Cucumis sativus]

 Score =  493 bits (1270), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 254/329 (77%), Positives = 286/329 (86%), Gaps = 8/329 (2%)

Query: 1   MREPSMMVRETAAEQLEERQSDWAYSKPVVVLDIIWNLAFVAVAFSVMVLSQNERPNMPL 60
           MREPSM+VRETAAEQLEERQSDWAYSKPVV+LDI+WN AFV VA +++VLS+NE P+MPL
Sbjct: 59  MREPSMLVRETAAEQLEERQSDWAYSKPVVILDIVWNFAFVVVAATILVLSRNESPSMPL 118

Query: 61  RLWIVGYAIQCVLHMVCVCVEYKRRSRRRVSAFGGAEEGN----LNSGTTRGDSGEYVSL 116
           RLWIVGYA QC+LHMVCVCVEY+RR + R SAF   EEGN    ++   +R +S  YVSL
Sbjct: 119 RLWIVGYAFQCILHMVCVCVEYRRRRQLRYSAFSSMEEGNSARSISGLGSRANSSHYVSL 178

Query: 117 ANQLEEEGTSSVAKHLESANTMFSFIWWIIGFYWVSAGGQALARDSPLLYWLCIIFLGFD 176
           A QL+E   SSVAKHLESANTMFSFIWWIIGFYWVSAGGQ+LA+ SPLLYWLCIIFLGFD
Sbjct: 179 A-QLDE-NDSSVAKHLESANTMFSFIWWIIGFYWVSAGGQSLAQASPLLYWLCIIFLGFD 236

Query: 177 VFFVVFCVALACIIGIAVCCCLPCIIAILYAVADQQEGASKEDIERLSKFKFRRMVDTEK 236
           VFFVVFCVALACIIGIAVCCCLPCIIA+LYAVADQ EGA+KED+E+LSKFKFR++ +TEK
Sbjct: 237 VFFVVFCVALACIIGIAVCCCLPCIIALLYAVADQ-EGATKEDVEQLSKFKFRKVENTEK 295

Query: 237 LSDDGQGSQGGIMTECGTETPNEHVLSNEDAECCICLSAYDDGVELRELPCGHHFHCACV 296
            S D Q   GG+M+EC T++P E  L  EDAECCICLSAY+DGVELRELPCGHHFHCACV
Sbjct: 296 FSTDVQEPLGGVMSECCTDSPIERPLLQEDAECCICLSAYEDGVELRELPCGHHFHCACV 355

Query: 297 DKWLYINATCPLCKYNILKSSSNQDREEV 325
           DKWLYINATCPLCKYNILK +SN  +EEV
Sbjct: 356 DKWLYINATCPLCKYNILK-NSNLAQEEV 383

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356514046|ref|XP_003525718.1| PREDICTED: E3 ubiquitin-protein ligase At4g11680-like [Glycine max]

 Score =  484 bits (1245), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 244/327 (74%), Positives = 278/327 (85%), Gaps = 8/327 (2%)

Query: 1   MREPSMMVRETAAEQLEERQSDWAYSKPVVVLDIIWNLAFVAVAFSVMVLSQNERPNMPL 60
           MREPSM+VRE AAEQLEERQSDWAYSKPVVVLDI+WN AFVA A +V +LS+NE PNMPL
Sbjct: 57  MREPSMVVREAAAEQLEERQSDWAYSKPVVVLDILWNFAFVAAAATVFILSRNENPNMPL 116

Query: 61  RLWIVGYAIQCVLHMVCVCVEYKRRSRRRVSA----FGGAEEGNLNSGTTRGDSGEYVSL 116
           RLWIVGYA+QCVLH+ CVCVEY+RR RRR  +      G   G+L   +  G SG YVSL
Sbjct: 117 RLWIVGYALQCVLHVACVCVEYQRRLRRREQSNAAAIAGGGSGDLGPPSMDG-SGHYVSL 175

Query: 117 ANQLEEEGTSSVAKHLESANTMFSFIWWIIGFYWVSAGGQALARDSPLLYWLCIIFLGFD 176
           A Q +++G S +AKHLESANTMFSFIWW++GFYWVSA  ++L RDSPLLYWLCI FLGFD
Sbjct: 176 A-QFDDDGIS-MAKHLESANTMFSFIWWVVGFYWVSADSESLVRDSPLLYWLCIAFLGFD 233

Query: 177 VFFVVFCVALACIIGIAVCCCLPCIIAILYAVADQQEGASKEDIERLSKFKFRRMVDTEK 236
           VFFVVFC+ALACI+GIAVCCCLPCIIA+LYAVADQ EGASKEDIE+LSKFKF+R    EK
Sbjct: 234 VFFVVFCMALACIVGIAVCCCLPCIIALLYAVADQ-EGASKEDIEQLSKFKFQRTETNEK 292

Query: 237 LSDDGQGSQGGIMTECGTETPNEHVLSNEDAECCICLSAYDDGVELRELPCGHHFHCACV 296
           L+ + QG+ GGIM EC  ++P EHVLS+EDAECCICLSAYDDGVELR+LPCGHHFHCACV
Sbjct: 293 LAGNTQGAAGGIMIECDADSPIEHVLSDEDAECCICLSAYDDGVELRQLPCGHHFHCACV 352

Query: 297 DKWLYINATCPLCKYNILKSSSNQDRE 323
           DKWL+INATCPLCKYNILKS+S+   E
Sbjct: 353 DKWLHINATCPLCKYNILKSTSHAQDE 379

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356539808|ref|XP_003538385.1| PREDICTED: E3 ubiquitin-protein ligase At1g12760-like [Glycine max]

 Score =  462 bits (1188), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 248/335 (74%), Positives = 273/335 (81%), Gaps = 13/335 (3%)

Query: 1   MREPSMMVRETAAEQLEERQSDWAYSKPVVVLDIIWNLAFVAVAFSVMVLSQNERPNMPL 60
           MREPSM+VRE AAEQLEERQSDWAYSKPVVVLDI+WNLAFV VA +V+VLS +E P MPL
Sbjct: 56  MREPSMLVREAAAEQLEERQSDWAYSKPVVVLDIVWNLAFVVVAGTVLVLSASEAPGMPL 115

Query: 61  RLWIVGYAIQCVLHMVCVCVEYKRRS----------RRRVSAFGGAEEGNLNSGTTRGDS 110
           RLWIVGYA+QCVLHMV VCVEY+RR           + RV +  G    +   G+    +
Sbjct: 116 RLWIVGYAMQCVLHMVFVCVEYRRRRRQQPAAASSVQDRVGSSSGNLSVSSREGSASASA 175

Query: 111 GEYVSLANQLEEEGTSSVAKHLESANTMFSFIWWIIGFYWVSAGGQALARDSPLLYWLCI 170
                L  QL++E TS VAKHLESANTMFSF+WWIIGFYWVSAGGQALA+DSP LYWLCI
Sbjct: 176 SAQNVLLGQLDDESTS-VAKHLESANTMFSFVWWIIGFYWVSAGGQALAQDSPQLYWLCI 234

Query: 171 IFLGFDVFFVVFCVALACIIGIAVCCCLPCIIAILYAVADQQEGASKEDIERLSKFKFRR 230
           IFLGFDVFFVVFCVALACIIGIAVCCCLPCIIA+LYAV DQ EGASKEDIE+LSKFKFRR
Sbjct: 235 IFLGFDVFFVVFCVALACIIGIAVCCCLPCIIALLYAVTDQ-EGASKEDIEQLSKFKFRR 293

Query: 231 MVDTEKLSDDGQGSQGGIMTECGTETPNEHVLSNEDAECCICLSAYDDGVELRELPCGHH 290
           +   EKL+   QG  GGIMTEC  ++P EH L+ EDAECCICLS+YDDGVELRELPCGHH
Sbjct: 294 IESNEKLTGTIQGPVGGIMTECQADSPIEHALAEEDAECCICLSSYDDGVELRELPCGHH 353

Query: 291 FHCACVDKWLYINATCPLCKYNILKSSSNQDREEV 325
           FHC CVDKWLYINATCPLCKYNILK SSN  +EEV
Sbjct: 354 FHCVCVDKWLYINATCPLCKYNILK-SSNLSQEEV 387

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359474241|ref|XP_003631422.1| PREDICTED: E3 ubiquitin-protein ligase At4g11680-like isoform 2 [Vitis vinifera]

 Score =  461 bits (1185), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 256/327 (78%), Positives = 285/327 (87%), Gaps = 8/327 (2%)

Query: 3   EPSMMVRETAAEQLEERQSDWAYSKPVVVLDIIWNLAFVAVAFSVMVLSQNERPNMPLRL 62
           EPSM+VRETAAEQLEERQSDWAYSKPVVVLD+IWN AFV VA +V+VLS+ E P+MPLR 
Sbjct: 61  EPSMLVRETAAEQLEERQSDWAYSKPVVVLDMIWNFAFVVVAAAVLVLSRRESPSMPLRF 120

Query: 63  WIVGYAIQCVLHMVCVCVEYKRRSRRRVSAFGGAEEGNLNSGTTRG----DSGEYVSLAN 118
           WIVGYA+QC+LH+VCV VEY+RR RR    FG  ++G  + G+       DS +YV+LA+
Sbjct: 121 WIVGYALQCILHIVCVSVEYRRRRRR-AGVFGSEDDGIGSGGSYSSSPQGDSSQYVTLAS 179

Query: 119 QLEEEGTSSVAKHLESANTMFSFIWWIIGFYWVSAGGQALARDSPLLYWLCIIFLGFDVF 178
            L +E ++SVAKHLESANTMFSFIWWIIGFYWVSAGGQALARDSP LYWLCIIFLGFDVF
Sbjct: 180 -LGDESSTSVAKHLESANTMFSFIWWIIGFYWVSAGGQALARDSPQLYWLCIIFLGFDVF 238

Query: 179 FVVFCVALACIIGIAVCCCLPCIIAILYAVADQQEGASKEDIERLSKFKFRRMVDTEKLS 238
           FVVFCVALAC+IGIAVCCCLPCIIAILYAVADQ EGASKEDI++LS+FKFR++ D EK+ 
Sbjct: 239 FVVFCVALACVIGIAVCCCLPCIIAILYAVADQ-EGASKEDIDQLSRFKFRKVGDIEKID 297

Query: 239 DDGQGSQGGIMTECGTETPNEHVLSNEDAECCICLSAYDDGVELRELPCGHHFHCACVDK 298
            D QG+ GGIMTECGT+ P EHVLS EDAECCICLSAYDDGVELRELPCGHHFHC CVDK
Sbjct: 298 GDIQGACGGIMTECGTDAPTEHVLSQEDAECCICLSAYDDGVELRELPCGHHFHCTCVDK 357

Query: 299 WLYINATCPLCKYNILKSSSNQDREEV 325
           WLYINATCPLCKYNILKSSSN  REEV
Sbjct: 358 WLYINATCPLCKYNILKSSSN-GREEV 383

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357481703|ref|XP_003611137.1| E3 ubiquitin-protein ligase [Medicago truncatula] gi|355512472|gb|AES94095.1| E3 ubiquitin-protein ligase [Medicago truncatula] gi|388506770|gb|AFK41451.1| unknown [Medicago truncatula]

 Score =  457 bits (1177), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 252/335 (75%), Positives = 282/335 (84%), Gaps = 14/335 (4%)

Query: 1   MREPSMMVRETAAEQLEERQSDWAYSKPVVVLDIIWNLAFVAVAFSVMVLSQNERPNMPL 60
           MREPS++VRE AAEQLEERQSDWAYSKPVV+LDI+WN AFV VA + + LS+NE P MPL
Sbjct: 57  MREPSVVVREAAAEQLEERQSDWAYSKPVVILDIVWNFAFVIVAGTALFLSRNEAPEMPL 116

Query: 61  RLWIVGYAIQCVLHMVCVCVEYKRRSRRRV----SAFGGAEE---GNLNS--GTTRGDSG 111
           RLWI GY +QCVLHMVCVC EY+RR R +     +A  G++    GN +S  G+    SG
Sbjct: 117 RLWIAGYVLQCVLHMVCVCFEYRRRRRFQRSSSSNAVAGSDRIGSGNFSSREGSRSAVSG 176

Query: 112 E-YVSLANQLEEEGTSSVAKHLESANTMFSFIWWIIGFYWVSAGGQALARDSPLLYWLCI 170
             YVSLA Q +EE TS VAKHLESANTMFSFIWWIIGFYWVSAGGQALA+DSP LYWLCI
Sbjct: 177 SSYVSLA-QFDEESTS-VAKHLESANTMFSFIWWIIGFYWVSAGGQALAQDSPQLYWLCI 234

Query: 171 IFLGFDVFFVVFCVALACIIGIAVCCCLPCIIAILYAVADQQEGASKEDIERLSKFKFRR 230
           +FLGFDVFFVVFCVALAC+IGIAVCCCLPCIIA+LYAVADQ EGASKEDIE+LSKFKFR+
Sbjct: 235 VFLGFDVFFVVFCVALACVIGIAVCCCLPCIIALLYAVADQ-EGASKEDIEQLSKFKFRK 293

Query: 231 MVDTEKLSDDGQGSQGGIMTECGTETPNEHVLSNEDAECCICLSAYDDGVELRELPCGHH 290
           +   EK +D+ QG  GGIMTEC  ++P EHVL+ EDAECCICLS+YDDGVELRELPCGHH
Sbjct: 294 VESNEKQTDNNQGPVGGIMTECRADSPIEHVLAEEDAECCICLSSYDDGVELRELPCGHH 353

Query: 291 FHCACVDKWLYINATCPLCKYNILKSSSNQDREEV 325
           FHCACVDKWLYINATCPLCKYNILK SSN  +EEV
Sbjct: 354 FHCACVDKWLYINATCPLCKYNILK-SSNLGQEEV 387

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359474243|ref|XP_003631423.1| PREDICTED: E3 ubiquitin-protein ligase At4g11680-like isoform 3 [Vitis vinifera]

 Score =  456 bits (1174), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 257/335 (76%), Positives = 282/335 (84%), Gaps = 15/335 (4%)

Query: 3   EPSMMVRETAAEQLEERQSDWAYSKPVVVLDIIWNLAFVAVAFSVMVLSQNERPNMPLRL 62
           EPSM+VRETAAEQLEERQSDWAYSKPVVVLD+IWN AFV VA +V+VLS+ E P+MPLR 
Sbjct: 61  EPSMLVRETAAEQLEERQSDWAYSKPVVVLDMIWNFAFVVVAAAVLVLSRRESPSMPLRF 120

Query: 63  WIVGYAIQCVLHMVCVCVEYKRRSRRRVSAFGGAEEGNLNSGTTRG----DSGEYVSLAN 118
           WIVGYA+QC+LH+VCV VEY+RR RR    FG  ++G  + G+       DS +YV+LAN
Sbjct: 121 WIVGYALQCILHIVCVSVEYRRRRRR-AGVFGSEDDGIGSGGSYSSSPQGDSSQYVTLAN 179

Query: 119 QLEEEGT--------SSVAKHLESANTMFSFIWWIIGFYWVSAGGQALARDSPLLYWLCI 170
             E            SSVAKHLESANTMFSFIWWIIGFYWVSAGGQALARDSP LYWLCI
Sbjct: 180 VDEHHSQTCQFLSLLSSVAKHLESANTMFSFIWWIIGFYWVSAGGQALARDSPQLYWLCI 239

Query: 171 IFLGFDVFFVVFCVALACIIGIAVCCCLPCIIAILYAVADQQEGASKEDIERLSKFKFRR 230
           IFLGFDVFFVVFCVALAC+IGIAVCCCLPCIIAILYAVADQ EGASKEDI++LS+FKFR+
Sbjct: 240 IFLGFDVFFVVFCVALACVIGIAVCCCLPCIIAILYAVADQ-EGASKEDIDQLSRFKFRK 298

Query: 231 MVDTEKLSDDGQGSQGGIMTECGTETPNEHVLSNEDAECCICLSAYDDGVELRELPCGHH 290
           + D EK+  D QG+ GGIMTECGT+ P EHVLS EDAECCICLSAYDDGVELRELPCGHH
Sbjct: 299 VGDIEKIDGDIQGACGGIMTECGTDAPTEHVLSQEDAECCICLSAYDDGVELRELPCGHH 358

Query: 291 FHCACVDKWLYINATCPLCKYNILKSSSNQDREEV 325
           FHC CVDKWLYINATCPLCKYNILKSSSN  REEV
Sbjct: 359 FHCTCVDKWLYINATCPLCKYNILKSSSN-GREEV 392

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356497216|ref|XP_003517458.1| PREDICTED: E3 ubiquitin-protein ligase At1g12760-like [Glycine max]

 Score =  454 bits (1168), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 252/333 (75%), Positives = 278/333 (83%), Gaps = 14/333 (4%)

Query: 1   MREPSMMVRETAAEQLEERQSDWAYSKPVVVLDIIWNLAFVAVAFSVMVLSQNERPNMPL 60
           MREPSM+VRE AAEQLEERQSDWAYSKPVVVLDI+WN AFV VA +V+VLS +E P MPL
Sbjct: 56  MREPSMLVREAAAEQLEERQSDWAYSKPVVVLDIVWNFAFVVVAGAVLVLSASEAPGMPL 115

Query: 61  RLWIVGYAIQCVLHMVCVCVEYKRRS----------RRRVSAFGGAEEGNLNSGTTRGDS 110
           RLWIVGYA+QCVLHMVCVCVEY+RR           + RV +  G    +   G+  G S
Sbjct: 116 RLWIVGYAMQCVLHMVCVCVEYRRRRRQQRAAASSVQDRVGSSSGNLSVSSREGSASG-S 174

Query: 111 GEYVSLANQLEEEGTSSVAKHLESANTMFSFIWWIIGFYWVSAGGQALARDSPLLYWLCI 170
            +YVSL  QL++EGTS VAKHLESANTMFSF+WWIIGFYWVSAGGQALA+DSP LYWLCI
Sbjct: 175 AQYVSLG-QLDDEGTS-VAKHLESANTMFSFVWWIIGFYWVSAGGQALAQDSPQLYWLCI 232

Query: 171 IFLGFDVFFVVFCVALACIIGIAVCCCLPCIIAILYAVADQQEGASKEDIERLSKFKFRR 230
           IFLGFDVFFVVFCVALACIIGIAVCCCLPCIIA+LYAVADQ EGASKEDIE+LSKFKFRR
Sbjct: 233 IFLGFDVFFVVFCVALACIIGIAVCCCLPCIIALLYAVADQ-EGASKEDIEQLSKFKFRR 291

Query: 231 MVDTEKLSDDGQGSQGGIMTECGTETPNEHVLSNEDAECCICLSAYDDGVELRELPCGHH 290
           +   EKL+   QG  GGIMTEC  ++P EHVL+ EDAECCICLS+YDDGVELRELPCGHH
Sbjct: 292 IESNEKLTGTIQGPVGGIMTECQADSPIEHVLAEEDAECCICLSSYDDGVELRELPCGHH 351

Query: 291 FHCACVDKWLYINATCPLCKYNILKSSSNQDRE 323
           FHC CVDKWLYINATCPLCKYNILKS++    E
Sbjct: 352 FHCVCVDKWLYINATCPLCKYNILKSNTLSQEE 384

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225453718|ref|XP_002271651.1| PREDICTED: E3 ubiquitin-protein ligase At4g11680-like isoform 1 [Vitis vinifera]

 Score =  452 bits (1163), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 231/328 (70%), Positives = 266/328 (81%), Gaps = 14/328 (4%)

Query: 1   MREPSMMVRETAAEQLEERQSDWAYSKPVVVLDIIWNLAFVAVAFSVMVLSQNERPNMPL 60
           MREPSM VRETAAEQLEERQSDWAYSKP+V+LDI+WNLAFV VA +V+V+S++E P+ PL
Sbjct: 54  MREPSMRVRETAAEQLEERQSDWAYSKPIVILDIVWNLAFVVVAMTVLVMSRDETPSTPL 113

Query: 61  RLWIVGYAIQCVLHMVCVCVEYKRRSRRRVSAFGGAEEGNLNSGTT--------RGDSGE 112
           RLWI+GY +QCVLHMVCVCVEYKRR  RR+ + G  E                  GD  +
Sbjct: 114 RLWIIGYGLQCVLHMVCVCVEYKRR--RRLVSSGALERSGGWGSGHLSSSSGSDEGDPID 171

Query: 113 Y-VSLANQLEEEGTSSVAKHLESANTMFSFIWWIIGFYWVSAGGQALARDSPLLYWLCII 171
           Y V + N+ E+E  +SVAKHLESANTMFSFIWWIIGFYWVSAGGQ L RDSP LYWLCI+
Sbjct: 172 YRVEVRNRDEDE--TSVAKHLESANTMFSFIWWIIGFYWVSAGGQDLTRDSPQLYWLCIV 229

Query: 172 FLGFDVFFVVFCVALACIIGIAVCCCLPCIIAILYAVADQQEGASKEDIERLSKFKFRRM 231
           FL FDVFFVV CVA+AC+IGIAVCCCLPCIIAILY VADQ EGA+KE+IERL K+KFRR+
Sbjct: 230 FLAFDVFFVVICVAVACVIGIAVCCCLPCIIAILYTVADQ-EGATKEEIERLPKYKFRRI 288

Query: 232 VDTEKLSDDGQGSQGGIMTECGTETPNEHVLSNEDAECCICLSAYDDGVELRELPCGHHF 291
            ++EKL+ + Q S GGIMTEC T+TP EHV+  EDAECCICLSAY+D  ELRELPC H F
Sbjct: 289 GESEKLNGEIQESFGGIMTECDTDTPMEHVIPQEDAECCICLSAYEDETELRELPCRHRF 348

Query: 292 HCACVDKWLYINATCPLCKYNILKSSSN 319
           HC C+DKWLYINATCPLCK NILK++S 
Sbjct: 349 HCTCIDKWLYINATCPLCKLNILKNASQ 376

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	325
TAIR|locus:2195077	408	AT1G12760 [Arabidopsis thalian	0.987	0.786	0.683	2.1e-123
TAIR|locus:2015248	381	AT1G63170 [Arabidopsis thalian	0.990	0.845	0.675	1.9e-122
TAIR|locus:2139717	390	AT4G11680 [Arabidopsis thalian	0.947	0.789	0.694	1.5e-120
TAIR|locus:2098916	379	AT3G61180 [Arabidopsis thalian	0.996	0.854	0.572	3.4e-100
TAIR|locus:2200301	343	AT1G68070 [Arabidopsis thalian	0.932	0.883	0.485	1.4e-80
TAIR|locus:1005452975	359	RIE1 "RING-finger protein for	0.947	0.857	0.484	2.1e-75
TAIR|locus:2125652	453	AT4G32600 [Arabidopsis thalian	0.864	0.620	0.348	3.6e-41
TAIR|locus:2034210	407	AT1G80400 [Arabidopsis thalian	0.849	0.678	0.320	5.3e-40
TAIR|locus:2133877	335	AT4G26580 [Arabidopsis thalian	0.156	0.152	0.549	6.5e-25
TAIR|locus:2161740	343	AT5G55970 [Arabidopsis thalian	0.193	0.183	0.444	7e-23

TAIR|locus:2195077 AT1G12760 [Arabidopsis thaliana (taxid:3702)]

 Score = 1213 (432.1 bits), Expect = 2.1e-123, P = 2.1e-123
 Identities = 233/341 (68%), Positives = 273/341 (80%)

Query:     1 MREPSMMVRETAAEQLEERQSDWAYSKPVVVLDIIWNLAFVAVAFSVMVLSQNERPNMPL 60
             MREPSM+VRE AAEQLEERQSDWAYSKPVVVLDI+WNLAFV+VA +++V+S+ E P MPL
Sbjct:    72 MREPSMLVREAAAEQLEERQSDWAYSKPVVVLDIVWNLAFVSVATAILVMSRKEHPIMPL 131

Query:    61 RLWIVGYAIQCVLHMVCVCVEYKRRSRRRV------------SAFGGAEEGNLNS---GT 105
             R+W++GYA+QCVLHMVCVCVEY+RR+RRR             S+   +   +L     G+
Sbjct:   132 RVWLLGYALQCVLHMVCVCVEYRRRNRRRTNRTTTTTPPRSRSSSSSSSSSSLEEEALGS 191

Query:   106 TRGDSGEYVSLANQLEEEGTSSVAKHLESANTMFSFIWWIIGFYWVSAGGQALARDSPLL 165
              R    + +SL + L+ E +SSVAKHLESANTMFSFIWWIIGFYWVSAGGQ LA++SP +
Sbjct:   192 RRNSGVQDLSLGH-LDTE-SSSVAKHLESANTMFSFIWWIIGFYWVSAGGQELAQESPRI 249

Query:   166 YWLCIIFLGXXXXXXXXXXALACIIGIAVCCCLPCIIAILYAVADQQEGASKEDIERLSK 225
             YWL I+FLG          ALAC+IGIAVCCCLPCIIA+LYAVADQ EGASKEDIE+L+K
Sbjct:   250 YWLSIVFLGFDVFFVVFCVALACVIGIAVCCCLPCIIAVLYAVADQ-EGASKEDIEQLTK 308

Query:   226 FKFRRMVDTEK-LSDDGQGSQGGIMTECGTETPNEHVLSNEDAECCICLSAYDDGVELRE 284
             FKFR++ D  K  +D+ QG+  GIMTECGT++P EH L  EDAECCICLSAY+DG ELRE
Sbjct:   309 FKFRKLGDANKHTNDEAQGTTEGIMTECGTDSPIEHTLLQEDAECCICLSAYEDGTELRE 368

Query:   285 LPCGHHFHCACVDKWLYINATCPLCKYNILKSSSNQDREEV 325
             LPCGHHFHC+CVDKWLYINATCPLCKYNILKSS N DREEV
Sbjct:   369 LPCGHHFHCSCVDKWLYINATCPLCKYNILKSS-NLDREEV 408

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

TAIR|locus:2015248 AT1G63170 [Arabidopsis thaliana (taxid:3702)]

 Score = 1204 (428.9 bits), Expect = 1.9e-122, P = 1.9e-122
 Identities = 229/339 (67%), Positives = 268/339 (79%)

Query:     1 MREPSMMVRETAAEQLEERQSDWAYSKPVVVLDIIWNLAFVAVAFSVMVLSQNERPNMPL 60
             MREPSM+VRE AAEQLEERQSDWAYSKPVVVLD +WNLAFV VA +V+VLS +E PNMPL
Sbjct:    46 MREPSMLVREAAAEQLEERQSDWAYSKPVVVLDFVWNLAFVVVATAVLVLSSDENPNMPL 105

Query:    61 RLWIVGYAIQCVLHMVCVCVEYKRR-SRRR--VSAFGGAEEGNLNS--------GTTRGD 109
             R+WI+GY +QC++HMVCVCVEY+RR SRRR  +S    +   + +S        G +R  
Sbjct:   106 RVWIIGYGLQCMMHMVCVCVEYRRRNSRRRRDLSPRSSSSSSSSSSSMDEEEGLGLSRNS 165

Query:   110 SGEYVSLANQLEEEGTSSVAKHLESANTMFSFIWWIIGFYWVSAGGQALARDSPLLYWLC 169
                Y+ L  QLE E  +S AKHLESANTM SFIWW+IGFYWVS+GGQ LA+ SP LYWLC
Sbjct:   166 DERYLELG-QLENEN-NSFAKHLESANTMISFIWWVIGFYWVSSGGQELAQGSPQLYWLC 223

Query:   170 IIFLGXXXXXXXXXXALACIIGIAVCCCLPCIIAILYAVADQQEGASKEDIERLSKFKFR 229
             I+FLG          ALAC+IGIAVCCCLPCIIA+LYAVA+Q EGASKEDI++L+KFKFR
Sbjct:   224 IVFLGFDVFFVVFCVALACVIGIAVCCCLPCIIAVLYAVAEQ-EGASKEDIDQLTKFKFR 282

Query:   230 RMVDTEKLSDD---GQGSQGGIMTECGTETPNEHVLSNEDAECCICLSAYDDGVELRELP 286
             ++ DT K + D   GQG  GG+MTECGT++P EH L +EDAECCICLSAY+D  ELRELP
Sbjct:   283 KVGDTMKHTVDEEQGQGDSGGVMTECGTDSPVEHALPHEDAECCICLSAYEDETELRELP 342

Query:   287 CGHHFHCACVDKWLYINATCPLCKYNILKSSSNQDREEV 325
             CGHHFHC CVDKWLYINATCPLCKYNILKSS+ ++ EEV
Sbjct:   343 CGHHFHCGCVDKWLYINATCPLCKYNILKSSNYEEGEEV 381

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

TAIR|locus:2139717 AT4G11680 [Arabidopsis thaliana (taxid:3702)]

 Score = 1186 (422.6 bits), Expect = 1.5e-120, P = 1.5e-120
 Identities = 223/321 (69%), Positives = 258/321 (80%)

Query:     1 MREPSMMVRETAAEQLEERQSDWAYSKPVVVLDIIWNLAFVAVAFSVMVLSQNERPNMPL 60
             MREPSM+VRETAAEQLEERQSDWAYSKPVV LDI+WNLAFVA+  +V++LS++E+PNMPL
Sbjct:    81 MREPSMLVRETAAEQLEERQSDWAYSKPVVFLDILWNLAFVAIGVAVLILSRDEKPNMPL 140

Query:    61 RLWIVGYAIQCVLHMVCVCVEYKRRSRRRVSAFGGAEEGNLNSGTTRGDSGEYVSLANQL 120
             R+W+VGY IQC LHM CVCVEY+RR RRR    GG       SG T   S +YVSLA QL
Sbjct:   141 RVWVVGYGIQCWLHMACVCVEYRRRRRRRHPEDGGG------SGLTNSSSQQYVSLA-QL 193

Query:   121 EEEG-TSSVAKHLESANTMFSFIWWIIGFYWVSAGGQALARDSPLLYWLCIIFLGXXXXX 179
             E+ G TS+ AKHLESANTMFSFIWWIIGFYWVSAGGQ L+ DSP LYWLCIIFLG     
Sbjct:   194 EDRGETSNPAKHLESANTMFSFIWWIIGFYWVSAGGQTLSSDSPQLYWLCIIFLGFDVFF 253

Query:   180 XXXXXALACIIGIAVCCCLPCIIAILYAVADQQEGASKEDIERLSKFKFRRMVDTEKLSD 239
                  ALAC+IG+AVCCCLPCIIAILYAVADQ EGASK DI+++ KF+F +  + EKLS 
Sbjct:   254 VVFCVALACVIGLAVCCCLPCIIAILYAVADQ-EGASKNDIDQMPKFRFTKTGNVEKLS- 311

Query:   240 DGQGSQGGIMTECGTETPNEHVLSNEDAECCICLSAYDDGVELRELPCGHHFHCACVDKW 299
                G   GIMTECGT++P E  LS EDAECCICL  Y+DGVELRELPC HHFHC C+DKW
Sbjct:   312 ---GKARGIMTECGTDSPIERSLSPEDAECCICLCEYEDGVELRELPCNHHFHCTCIDKW 368

Query:   300 LYINATCPLCKYNILKSSSNQ 320
             L+IN+ CPLCK+NILK+++N+
Sbjct:   369 LHINSRCPLCKFNILKNANNE 389

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0005774 "vacuolar membrane" evidence=IDA

TAIR|locus:2098916 AT3G61180 [Arabidopsis thaliana (taxid:3702)]

 Score = 994 (355.0 bits), Expect = 3.4e-100, P = 3.4e-100
 Identities = 186/325 (57%), Positives = 234/325 (72%)

Query:     1 MREPSMMVRETAAEQLEERQSDWAYSKPVVVLDIIWNLAFVAVAFSVMVLSQNERPNMPL 60
             +REPS+ VRE AAEQLEERQS WAYSKP++VLDI+WN  FV V+ +++  S +E P++PL
Sbjct:    56 LREPSVRVREVAAEQLEERQSQWAYSKPIIVLDILWNFLFVIVSIAILGFSSDEDPDVPL 115

Query:    61 RLWIVGYAIQCVLHMVCVCVEYKRRSRRRVSAFGGAEEGNLNSGTTRGDSGEYVSLANQL 120
             RLWI+GY +QC+ H+ CV  EYKRR         G +  N  S +   D  +  S+ N  
Sbjct:   116 RLWIIGYNVQCLFHVGCVIAEYKRRRVANSPPPSGEDSSNHESLSGSEDESDGYSINNTD 175

Query:   121 EEEGTSSVAKHLESANTMFSFIWWIIGFYWVSAGGQALARDSPLLYWLCIIFLGXXXXXX 180
             +++  +S  KHLESANTMFSF+WWIIGFYWV+A  +ALA+ SP LYWLC+ FL       
Sbjct:   176 DDDHGTSFTKHLESANTMFSFVWWIIGFYWVTADTEALAQSSPQLYWLCVAFLAFDVMFV 235

Query:   181 XXXXALACIIGIAVCCCLPCIIAILYAVADQQEGASKEDIERLSKFKFRRMVDTEKLSDD 240
                 A+A +IGIAVCCCLPCIIAILYA+ADQ EGA  E+IERL KFKF  + ++EK++ +
Sbjct:   236 VICVAVASLIGIAVCCCLPCIIAILYALADQ-EGAPDEEIERLLKFKFLTVKNSEKVNGE 294

Query:   241 GQGSQGGIMTECGTETPNEHVLSNEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWL 300
              + +QGGIMT   TE+  E +L +EDAEC ICL AY+DGVELRELPC HHFH  CVDKWL
Sbjct:   295 IRETQGGIMTGLDTESQTERMLLSEDAECSICLCAYEDGVELRELPCRHHFHSLCVDKWL 354

Query:   301 YINATCPLCKYNILKSSSNQDREEV 325
              INATCPLCK+NILK+      E+V
Sbjct:   355 RINATCPLCKFNILKNGEPSGSEQV 379

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0005774 "vacuolar membrane" evidence=IDA

TAIR|locus:2200301 AT1G68070 [Arabidopsis thaliana (taxid:3702)]

 Score = 809 (289.8 bits), Expect = 1.4e-80, P = 1.4e-80
 Identities = 155/319 (48%), Positives = 211/319 (66%)

Query:     2 REPSMMVRETAAEQLEERQSDWAYSKPVVVLDIIWNLAFVAVAFSVMVLSQNERPNMPLR 61
             R  SM+VRETAA++LEER++DW YSKPVV LD++WN AFV VA  ++++ + E+PN+P+R
Sbjct:    41 RGASMVVRETAAQELEERRADWGYSKPVVALDMLWNTAFVLVAIVMLLVFKEEKPNVPIR 100

Query:    62 LWIVGYAIQCVLHMVCVCVEYKRRSRRRVSAFGGAEEGNLNSGTTRGDSGEYVSLANQLE 121
             +WI GYAIQC++H+V V +E+++R+ R       +  G+L +        E     ++  
Sbjct:   101 IWICGYAIQCLVHVVLVWLEFRKRNAR-------SRPGDLEAAQATNQDSE-----DEDN 148

Query:   122 EEGTSSVAKHLESANTMFSFIWWIIGFYWVSAGGQALARDSPLLYWLCIIFLGXXXXXXX 181
             +E   S  K  ES NT+ SF+WWI+GFYW+ +GG  L +++  LYWL  +FL        
Sbjct:   149 DERFLST-KTCESMNTIISFVWWIVGFYWLVSGGDILLQNATHLYWLTFVFLAFDVFFAI 207

Query:   182 XXXALACIIGIAVCCCLPCIIAILYAVADQQEGASKEDIERLSKFKFRRMVDTEKLSDDG 241
                 LAC+IGIA+CCCLPCIIA+LYAVA Q EGAS+ D+  L K++F  M + EK SD G
Sbjct:   208 FCVVLACLIGIALCCCLPCIIALLYAVAGQ-EGASEADLSILPKYRFHTMNNDEKQSDGG 266

Query:   242 QGSQGGIMTECGTETPNEHVLSNEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLY 301
              G    +         NE VL  EDA+CCICLS+Y+DG EL  LPC HHFH  C+ KWL 
Sbjct:   267 -GKMIPV-DAASENLGNERVLLPEDADCCICLSSYEDGAELVSLPCNHHFHSTCIVKWLK 324

Query:   302 INATCPLCKYNILKSSSNQ 320
             +NATCPLCK+NILK +  +
Sbjct:   325 MNATCPLCKFNILKGNEQE 343

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0006661 "phosphatidylinositol biosynthetic process" evidence=RCA

TAIR|locus:1005452975 RIE1 "RING-finger protein for embryogenesis" [Arabidopsis thaliana (taxid:3702)]

 Score = 760 (272.6 bits), Expect = 2.1e-75, P = 2.1e-75
 Identities = 155/320 (48%), Positives = 193/320 (60%)

Query:     2 REPSMMVRETAAEQLEERQSDWAYSKPVVVLDIIWNLAFVAVAFSVMVLSQNERPNMPLR 61
             R PSM+VRETAA  LEER+ DW YSKPVV  DI+WN A V  +  ++V +  ERPN P+R
Sbjct:    50 RAPSMLVRETAARALEERRIDWGYSKPVVAADILWNAALVLASAVMLVGTVEERPNEPIR 109

Query:    62 LWIVGYAIQCVLHMVCVCVEYKRR-SRRRVSAFGGAEEGNLNSGTTRGDSGEYVSLANQL 120
             +WI  Y +QC+ H+V V  EY RR S RR       +  + N         EY    +  
Sbjct:   110 VWICVYGLQCLFHVVLVWSEYWRRNSTRRARDLESYDHEDYNI--------EYDYEQDSD 161

Query:   121 EEEGTSSVAKHLESANTMFSFIWWIIGFYWVSAGGQALARDSPLLYWLCIIFLGXXXXXX 180
             +   T S  K  ES NT+ SFIWWIIGFYWV  GG  L  ++P LYWL +IFL       
Sbjct:   162 DNSTTYSFVKRCESINTVISFIWWIIGFYWVVEGGDKLLGEAPNLYWLSVIFLAIDVFFA 221

Query:   181 XXXXALACIIGIAVCCCLPCIIAILYAVADQQEGASKEDIERLSKFKFRRMVDTEKLSDD 240
                  LAC++GIA+CCCLPCIIA+LYAVA   EG S+ ++  L  +KF+     EK +  
Sbjct:   222 VFCVVLACLVGIALCCCLPCIIALLYAVAGT-EGVSEAELGVLPLYKFKAFHSNEK-NIT 279

Query:   241 GQGSQGGIMTECGTETPNEHVLSNEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWL 300
             G G    I    G     E  L  EDA+CCICLS+Y+DG EL  LPC HHFH  C+ KWL
Sbjct:   280 GPGKMVPIPIN-GLCLATERTLLAEDADCCICLSSYEDGAELHALPCNHHFHSTCIVKWL 338

Query:   301 YINATCPLCKYNILKSSSNQ 320
              + ATCPLCKYNILK +++Q
Sbjct:   339 KMRATCPLCKYNILKGTTDQ 358

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0009790 "embryo development" evidence=IMP

TAIR|locus:2125652 AT4G32600 [Arabidopsis thaliana (taxid:3702)]

 Score = 437 (158.9 bits), Expect = 3.6e-41, P = 3.6e-41
 Identities = 108/310 (34%), Positives = 158/310 (50%)

Query:    30 VVLDIIWNLAFVAVAFSVMVLSQNERPNMPLRLWIVGYAIQCVLHMVCVCVEYKRRSRRR 89
             + +++   +  +  A  V+ LS++E P  PL  WIVGYA  CV  +  +   Y   S + 
Sbjct:   113 ISIELFLTVGQIIAAIVVLSLSKHEHPRAPLFTWIVGYACGCVATLPLLYWRYYH-SNQA 171

Query:    90 VSAFGGAEEGNLN----------SGTTRGDSGEYVSLANQLEE-EGTSSVAK------HL 132
                  G    NLN          S T+  D  +  + +++     G  S A+      + 
Sbjct:   172 SEQDSGQHRPNLNVAAGPFAFSISRTSEADGRQTNTTSSRGSRYPGFISAARLKVIVEYF 231

Query:   133 ESANTMFSFIWWIIGFYWVSAGGQALARDSPLLYWLCIIFLGXXXXXXXXXXALACIIGI 192
             + A   F  +W+++G  W+  GG + A ++P LY LC++FL           A+  I+  
Sbjct:   232 KMALDCFFAVWFVVGNVWIF-GGHSSAAEAPNLYRLCLVFL----TFSCIGYAMPFILCT 286

Query:   193 AVCCCLPCIIAILYAVAD--QQEGASKEDIERLSKFKFRRMVDTEKLSDDGQG-SQGGIM 249
              +CCCLPCII+IL    D  Q  GA+ E I  L   KF+         D+G   S+GG++
Sbjct:   287 TICCCLPCIISILGYREDLTQPRGATPESINALPTHKFKLKKSRSNGDDNGSSTSEGGVV 346

Query:   250 TECGTETPNEHVLSNEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLC 309
                GT+  NE  +S EDA CCICL+ Y +  ELRELPC H FH  CVDKWL INA+CPLC
Sbjct:   347 A-AGTD--NERAISGEDAVCCICLAKYANNEELRELPCSHFFHKECVDKWLKINASCPLC 403

Query:   310 KYNILKSSSN 319
             K  + + +S+
Sbjct:   404 KSEVGEKNSD 413

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2034210 AT1G80400 [Arabidopsis thaliana (taxid:3702)]

 Score = 426 (155.0 bits), Expect = 5.3e-40, P = 5.3e-40
 Identities = 100/312 (32%), Positives = 162/312 (51%)

Query:    30 VVLDIIWNLAFVAVAFSVMVLSQNERPNMPLRLWIVGYAIQCVLHMVCVCVEYKRRSRRR 89
             + ++++  +A +  A  VMVL+++E P  PL  W++GY   C+  +  +   ++ R+  R
Sbjct:   106 ISVELVVTVAQIVAAIVVMVLAKDEHPEAPLFTWVIGYTCGCLATLPILY--WRFRTYNR 163

Query:    90 VSAFGGAEEGNLNSGTTRGDSGEYVSLANQLEEEGTSSVAK------------------- 130
              +    ++    + G +       VS+A   +EE ++ V+                    
Sbjct:   164 ATGQDSSQRATSSQGNSESTPYTAVSVAQAADEENSTGVSAAPRNNQVGESLRTRLNGLV 223

Query:   131 -HLESANTMFSFIWWIIGFYWVSAGGQALARDSPLLYWLCIIFLGXXXXXXXXXXALACI 189
              H + A   F  +W+++G  W+  GG +   DSP LY LCI FL           A+  I
Sbjct:   224 DHFKMAIDCFFAVWFVVGNVWIF-GGHSSPSDSPKLYRLCIAFL----TFSCIGYAMPFI 278

Query:   190 IGIAVCCCLPCIIAILYAVAD--QQEGASKEDIERLSKFKFRRMVDTE-KLSDDGQGSQG 246
             +   +CCCLPC+I++L    +  Q  GA+ E I  L  ++F+     + + S++G+G   
Sbjct:   279 LCATICCCLPCLISVLGFRENFSQTRGATAEAINALPVYRFKSKSRNDLEFSEEGEG--- 335

Query:   247 GIMTECGTETPNEHVLSNEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATC 306
             G +   G++   + ++S EDA CCICL+ Y D  ++RELPC H FH  CVDKWL INATC
Sbjct:   336 GFLL-LGSQ--KKRLISGEDASCCICLTRYGDDEQVRELPCSHVFHVDCVDKWLKINATC 392

Query:   307 PLCKYNILKSSS 318
             PLCK  + +SSS
Sbjct:   393 PLCKNEVGESSS 404

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

TAIR|locus:2133877 AT4G26580 [Arabidopsis thaliana (taxid:3702)]

 Score = 178 (67.7 bits), Expect = 6.5e-25, Sum P(2) = 6.5e-25
 Identities = 28/51 (54%), Positives = 37/51 (72%)

Query:   263 SNEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNI 313
             +N D ECCICL+ Y +  E+R+LPC H FH  CVD+WL I + CPLCK ++
Sbjct:   283 ANNDPECCICLAKYKEKEEVRKLPCSHRFHLKCVDQWLRIISCCPLCKQDL 333

GO:0008270 "zinc ion binding" evidence=IEA;ISS

TAIR|locus:2161740 AT5G55970 [Arabidopsis thaliana (taxid:3702)]

 Score = 179 (68.1 bits), Expect = 7.0e-23, Sum P(2) = 7.0e-23
 Identities = 28/63 (44%), Positives = 42/63 (66%)

Query:   251 ECGTETPNEHVLSNEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCK 310
             +  +++ ++     +D ECCICL+ Y D  E+R+LPC H FH  CVD+WL I + CPLCK
Sbjct:   279 DSASDSDSDSATVTDDPECCICLAKYKDKEEVRKLPCSHKFHSKCVDQWLRIISCCPLCK 338

Query:   311 YNI 313
              ++
Sbjct:   339 QDL 341

GO:0008270 "zinc ion binding" evidence=IEA;ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q93Z92	RING4_ARATH	6, ., 3, ., 2, ., -	0.7258	0.9476	0.7897	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00001121001 SubName- Full=Chromosome chr2 scaffold_112, whole genome shotgun sequence; (316 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	325
pfam13639	46	pfam13639, zf-RING_2, Ring finger domain	1e-13
cd00162	45	cd00162, RING, RING-finger (Really Interesting New	4e-10
COG5540	374	COG5540, COG5540, RING-finger-containing ubiquitin	2e-08
smart00184	40	smart00184, RING, Ring finger	2e-07
pfam12678	73	pfam12678, zf-rbx1, RING-H2 zinc finger	3e-07
pfam13923	45	pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RI	4e-07
COG5243	491	COG5243, HRD1, HRD ubiquitin ligase complex, ER me	2e-06
pfam00097	40	pfam00097, zf-C3HC4, Zinc finger, C3HC4 type (RING	7e-06
COG5219	1525	COG5219, COG5219, Uncharacterized conserved protei	2e-04
PHA02929	238	PHA02929, PHA02929, N1R/p28-like protein; Provisio	0.004

>gnl|CDD|222279 pfam13639, zf-RING_2, Ring finger domain

 Score = 64.0 bits (156), Expect = 1e-13
 Identities = 24/43 (55%), Positives = 30/43 (69%)

Query: 268 ECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCK 310
           EC ICL  ++ G E+  LPCGH FH  C+DKWL  + TCPLC+
Sbjct: 2   ECPICLDEFEPGEEVVVLPCGHVFHKECLDKWLRSSNTCPLCR 44

Length = 46

>gnl|CDD|238093 cd00162, RING, RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

 Score = 54.0 bits (130), Expect = 4e-10
 Identities = 24/47 (51%), Positives = 29/47 (61%), Gaps = 3/47 (6%)

Query: 268 ECCICLSAYDDGVELRELPCGHHFHCACVDKWL-YINATCPLCKYNI 313
           EC ICL  + + V L  LPCGH F  +C+DKWL     TCPLC+  I
Sbjct: 1   ECPICLEEFREPVVL--LPCGHVFCRSCIDKWLKSGKNTCPLCRTPI 45

Length = 45

>gnl|CDD|227827 COG5540, COG5540, RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

 Score = 54.6 bits (131), Expect = 2e-08
 Identities = 24/45 (53%), Positives = 28/45 (62%), Gaps = 3/45 (6%)

Query: 268 ECCICLSAYDDGVELRELPCGHHFHCACVDKWL--YINATCPLCK 310
           EC IC+S +     LR LPC H FH  CVDKWL  Y N  CP+C+
Sbjct: 325 ECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNK-CPVCR 368

Length = 374

>gnl|CDD|214546 smart00184, RING, Ring finger

 Score = 46.3 bits (110), Expect = 2e-07
 Identities = 20/42 (47%), Positives = 24/42 (57%), Gaps = 3/42 (7%)

Query: 269 CCICLSAYDDGVELRELPCGHHFHCACVDKWLYI-NATCPLC 309
           C ICL  Y    +   LPCGH F  +C+ KWL   N TCP+C
Sbjct: 1   CPICLEEYLK--DPVILPCGHTFCRSCIRKWLESGNNTCPIC 40

E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s). Length = 40

>gnl|CDD|221705 pfam12678, zf-rbx1, RING-H2 zinc finger

 Score = 47.0 bits (112), Expect = 3e-07
 Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 10/56 (17%)

Query: 265 EDAECCICLSAYD----------DGVELRELPCGHHFHCACVDKWLYINATCPLCK 310
           ED  C IC + +D          D   +    CGH FH  C+ +WL    TCPLC+
Sbjct: 18  EDDVCAICRNHFDGTCPECKSPGDDCPVVWGECGHAFHLHCISRWLKTRNTCPLCR 73

There are 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding. The protein, of which this domain is the conserved region, participates in diverse functions relevant to chromosome metabolism and cell cycle control. Length = 73

>gnl|CDD|206094 pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RING finger)

 Score = 45.6 bits (108), Expect = 4e-07
 Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 2/47 (4%)

Query: 265 EDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKY 311
           E+ EC ICL    D V L   PCGH F   C+ ++L   + CP+C+ 
Sbjct: 1   EELECPICLDLLRDPVVL--TPCGHVFCRECILRYLKKKSKCPICRT 45

Length = 45

>gnl|CDD|227568 COG5243, HRD1, HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]

 Score = 48.4 bits (115), Expect = 2e-06
 Identities = 21/66 (31%), Positives = 28/66 (42%), Gaps = 10/66 (15%)

Query: 255 ETPNEHVLSNEDAECCICLSAY----------DDGVELRELPCGHHFHCACVDKWLYINA 304
            T  E  L+N D  C IC+                +  + LPCGH  H  C+  WL    
Sbjct: 276 PTATEEQLTNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQQ 335

Query: 305 TCPLCK 310
           TCP+C+
Sbjct: 336 TCPICR 341

Length = 491

>gnl|CDD|215715 pfam00097, zf-C3HC4, Zinc finger, C3HC4 type (RING finger)

 Score = 42.1 bits (99), Expect = 7e-06
 Identities = 21/42 (50%), Positives = 23/42 (54%), Gaps = 3/42 (7%)

Query: 269 CCICLSAYDDGVELRELPCGHHFHCACVDKWL-YINATCPLC 309
           C ICL    D V +  LPCGH F   C+  WL   N TCPLC
Sbjct: 1   CPICLEEPKDPVTI--LPCGHLFCSKCILSWLESGNVTCPLC 40

The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid. Many proteins containing a RING finger play a key role in the ubiquitination pathway. Length = 40

>gnl|CDD|227544 COG5219, COG5219, Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

 Score = 42.7 bits (100), Expect = 2e-04
 Identities = 25/79 (31%), Positives = 31/79 (39%), Gaps = 10/79 (12%)

Query: 243  GSQGGIMTECGTETPNEHVLSNEDAECCICLSAYDDGVELRELP------CGHHFHCACV 296
               G  M   G    N     +   EC IC S  D  V+ R LP      C + FH  C+
Sbjct: 1446 KKNGSFMDLLGLWKKNIDEKFSGHEECAICYSVLD-MVD-RSLPSKRCATCKNKFHTRCL 1503

Query: 297  DKWLYI--NATCPLCKYNI 313
             KW      + CPLC+  I
Sbjct: 1504 YKWFASSARSNCPLCRSEI 1522

Length = 1525

>gnl|CDD|222944 PHA02929, PHA02929, N1R/p28-like protein; Provisional

 Score = 37.8 bits (88), Expect = 0.004
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 5/54 (9%)

Query: 262 LSNEDAECCICLS-AYDDGVELRE---LP-CGHHFHCACVDKWLYINATCPLCK 310
             ++D EC IC+   YD  ++      L  C H F   C+D W     TCP+C+
Sbjct: 170 NRSKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCR 223

Length = 238

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	325
KOG4628	348	consensus Predicted E3 ubiquitin ligase [Posttrans	99.81
PF13639	44	zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C	99.59
COG5540	374	RING-finger-containing ubiquitin ligase [Posttrans	99.41
PHA02929	238	N1R/p28-like protein; Provisional	99.34
PF12678	73	zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766	99.34
COG5243	491	HRD1 HRD ubiquitin ligase complex, ER membrane com	99.18
KOG0317	293	consensus Predicted E3 ubiquitin ligase, integral	99.08
PLN03208	193	E3 ubiquitin-protein ligase RMA2; Provisional	99.05
cd00162	45	RING RING-finger (Really Interesting New Gene) dom	99.02
PF13920	50	zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger);	98.99
PF12861	85	zf-Apc11: Anaphase-promoting complex subunit 11 RI	98.93
PF13923	39	zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger);	98.93
KOG0823	230	consensus Predicted E3 ubiquitin ligase [Posttrans	98.92
KOG0802	543	consensus E3 ubiquitin ligase [Posttranslational m	98.91
PF14634	44	zf-RING_5: zinc-RING finger domain	98.77
smart00184	39	RING Ring finger. E3 ubiquitin-protein ligase acti	98.74
PHA02926	242	zinc finger-like protein; Provisional	98.73
PF00097	41	zf-C3HC4: Zinc finger, C3HC4 type (RING finger); I	98.71
KOG0828	636	consensus Predicted E3 ubiquitin ligase [Posttrans	98.7
PF15227	42	zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB:	98.65
KOG1734	328	consensus Predicted RING-containing E3 ubiquitin l	98.62
smart00504	63	Ubox Modified RING finger domain. Modified RING fi	98.61
KOG0320	187	consensus Predicted E3 ubiquitin ligase [Posttrans	98.6
smart00744	49	RINGv The RING-variant domain is a C4HC3 zinc-fing	98.55
COG5194	88	APC11 Component of SCF ubiquitin ligase and anapha	98.54
TIGR00599	397	rad18 DNA repair protein rad18. This family is bas	98.45
KOG1493	84	consensus Anaphase-promoting complex (APC), subuni	98.31
PF13445	43	zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.	98.27
COG5574	271	PEX10 RING-finger-containing E3 ubiquitin ligase [	98.26
KOG0804	493	consensus Cytoplasmic Zn-finger protein BRAP2 (BRC	98.25
COG5219	1525	Uncharacterized conserved protein, contains RING Z	98.14
KOG2930	114	consensus SCF ubiquitin ligase, Rbx1 component [Po	98.1
TIGR00570	309	cdk7 CDK-activating kinase assembly factor MAT1. A	98.02
PF04564	73	U-box: U-box domain; InterPro: IPR003613 Quality c	98.01
PF11793	70	FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.	98.01
KOG0827	465	consensus Predicted E3 ubiquitin ligase [Posttrans	97.97
KOG2164	513	consensus Predicted E3 ubiquitin ligase [Posttrans	97.92
KOG4265	349	consensus Predicted E3 ubiquitin ligase [Posttrans	97.86
KOG0287	442	consensus Postreplication repair protein RAD18 [Re	97.81
KOG2177	386	consensus Predicted E3 ubiquitin ligase [Posttrans	97.8
KOG0825	1134	consensus PHD Zn-finger protein [General function	97.72
COG5432	391	RAD18 RING-finger-containing E3 ubiquitin ligase [	97.56
KOG4445	368	consensus Uncharacterized conserved protein, conta	97.5
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	97.4
KOG1039	344	consensus Predicted E3 ubiquitin ligase [Posttrans	97.39
KOG4172	62	consensus Predicted E3 ubiquitin ligase [Posttrans	97.28
KOG0311	381	consensus Predicted E3 ubiquitin ligase [Posttrans	97.2
KOG0824	324	consensus Predicted E3 ubiquitin ligase [Posttrans	97.13
KOG1941	518	consensus Acetylcholine receptor-associated protei	97.05
PF14835	65	zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM	97.04
PF05883	134	Baculo_RING: Baculovirus U-box/Ring-like domain; I	96.98
KOG4159	398	consensus Predicted E3 ubiquitin ligase [Posttrans	96.85
PHA02862	156	5L protein; Provisional	96.77
KOG1785	563	consensus Tyrosine kinase negative regulator CBL [	96.75
PF12906	47	RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.	96.69
KOG1428	3738	consensus Inhibitor of type V adenylyl cyclases/Ne	96.63
KOG3970	299	consensus Predicted E3 ubiquitin ligase [Posttrans	96.56
KOG0801	205	consensus Predicted E3 ubiquitin ligase [Posttrans	96.56
PF11789	57	zf-Nse: Zinc-finger of the MIZ type in Nse subunit	96.55
KOG0297	391	consensus TNF receptor-associated factor [Signal t	96.4
PHA02825	162	LAP/PHD finger-like protein; Provisional	96.17
COG5152	259	Uncharacterized conserved protein, contains RING a	95.91
KOG1814	445	consensus Predicted E3 ubiquitin ligase [Posttrans	95.62
PF10367	109	Vps39_2: Vacuolar sorting protein 39 domain 2; Int	95.42
KOG0978	698	consensus E3 ubiquitin ligase involved in syntaxin	95.28
PF14570	48	zf-RING_4: RING/Ubox like zinc-binding domain; PDB	95.14
KOG1813	313	consensus Predicted E3 ubiquitin ligase [Posttrans	95.04
KOG2879	298	consensus Predicted E3 ubiquitin ligase [Posttrans	94.7
PHA03096	284	p28-like protein; Provisional	94.52
KOG1952	950	consensus Transcription factor NF-X1, contains NFX	94.51
KOG0827	465	consensus Predicted E3 ubiquitin ligase [Posttrans	94.43
KOG1002	791	consensus Nucleotide excision repair protein RAD16	94.36
PF07800	162	DUF1644: Protein of unknown function (DUF1644); In	94.12
KOG1571	355	consensus Predicted E3 ubiquitin ligase [Posttrans	93.88
KOG2660	331	consensus Locus-specific chromosome binding protei	93.63
KOG1609	323	consensus Protein involved in mRNA turnover and st	93.45
KOG4692	489	consensus Predicted E3 ubiquitin ligase [Posttrans	93.45
KOG1940	276	consensus Zn-finger protein [General function pred	93.31
KOG4275	350	consensus Predicted E3 ubiquitin ligase [Posttrans	93.27
KOG3039	303	consensus Uncharacterized conserved protein [Funct	93.23
KOG3268	234	consensus Predicted E3 ubiquitin ligase [Posttrans	92.12
KOG1100	207	consensus Predicted E3 ubiquitin ligase [Posttrans	91.84
PF03854	50	zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc	91.7
COG5222	427	Uncharacterized conserved protein, contains RING Z	91.62
KOG0826	357	consensus Predicted E3 ubiquitin ligase involved i	91.06
PF08746	43	zf-RING-like: RING-like domain; InterPro: IPR01485	90.96
KOG4185	296	consensus Predicted E3 ubiquitin ligase [Posttrans	90.61
KOG2932	389	consensus E3 ubiquitin ligase involved in ubiquiti	89.76
COG5183	1175	SSM4 Protein involved in mRNA turnover and stabili	89.66
PF04641	260	Rtf2: Rtf2 RING-finger	89.42
PF14447	55	Prok-RING_4: Prokaryotic RING finger family 4	89.15
KOG3161	861	consensus Predicted E3 ubiquitin ligase [Posttrans	88.72
COG5236	493	Uncharacterized conserved protein, contains RING Z	88.47
PF14446	54	Prok-RING_1: Prokaryotic RING finger family 1	88.44
KOG0802	543	consensus E3 ubiquitin ligase [Posttranslational m	87.27
KOG2034	911	consensus Vacuolar sorting protein PEP3/VPS18 [Int	86.65
COG5175	480	MOT2 Transcriptional repressor [Transcription]	86.54
KOG3053	293	consensus Uncharacterized conserved protein [Funct	86.54
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	86.38
KOG1001	674	consensus Helicase-like transcription factor HLTF/	86.28
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	85.61
PF10272	358	Tmpp129: Putative transmembrane protein precursor;	84.26
KOG4362	684	consensus Transcriptional regulator BRCA1 [Replica	82.79
KOG0298	1394	consensus DEAD box-containing helicase-like transc	81.77
PF11023	114	DUF2614: Protein of unknown function (DUF2614); In	80.61

>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.81  E-value=4.6e-20  Score=174.44  Aligned_cols=81  Identities=35%  Similarity=0.760  Sum_probs=69.3

Q ss_pred             hcCCCCHHHHhhcccceeeeccccccccCCCCCCCCCcccccCCCCCCcccCCCCCcccccccccccCCCceEEeCcCCc
Q 020491          211 QQEGASKEDIERLSKFKFRRMVDTEKLSDDGQGSQGGIMTECGTETPNEHVLSNEDAECCICLSAYDDGVELRELPCGHH  290 (325)
Q Consensus       211 ~~~~~s~~~i~~Lp~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ed~~C~ICL~~y~~~~~lr~LPC~H~  290 (325)
                      +.+++.+..++++|..+|+...+++..                             ..|+|||++|++||++|.|||+|.
T Consensus       203 ~~~r~~k~~l~~~p~~~f~~~~~~~~~-----------------------------~~CaIClEdY~~GdklRiLPC~H~  253 (348)
T KOG4628|consen  203 RRNRLIKRLLKKLPVRTFTKGDDEDAT-----------------------------DTCAICLEDYEKGDKLRILPCSHK  253 (348)
T ss_pred             hhhhhHHHHHhhCCcEEeccccccCCC-----------------------------ceEEEeecccccCCeeeEecCCCc
Confidence            357889999999999999876544211                             489999999999999999999999


Q ss_pred             cchHHHHHHHhcCC-CCccccccccCCCCcc
Q 020491          291 FHCACVDKWLYINA-TCPLCKYNILKSSSNQ  320 (325)
Q Consensus       291 FH~~CI~~WL~~~~-tCPlCR~~I~~~~~~~  320 (325)
                      ||..|||+||..+. .||+||+++.+....+
T Consensus       254 FH~~CIDpWL~~~r~~CPvCK~di~~~~~~~  284 (348)
T KOG4628|consen  254 FHVNCIDPWLTQTRTFCPVCKRDIRTDSGSE  284 (348)
T ss_pred             hhhccchhhHhhcCccCCCCCCcCCCCCCCC
Confidence            99999999998875 5999999998765554

>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A

Probab=99.59  E-value=5e-16  Score=105.33  Aligned_cols=44  Identities=48%  Similarity=1.260  Sum_probs=40.8

Q ss_pred             cccccccccccCCCceEEeCcCCccchHHHHHHHhcCCCCcccc
Q 020491          267 AECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCK  310 (325)
Q Consensus       267 ~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~~~~tCPlCR  310 (325)
                      ++|+||+++|++++.+..|+|+|.||.+||.+|++.+.+||+||
T Consensus         1 d~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~~~CP~CR   44 (44)
T PF13639_consen    1 DECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRNNSCPVCR   44 (44)
T ss_dssp             -CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred             CCCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhCCcCCccC
Confidence            36999999999999999999999999999999999999999997

...

>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.41  E-value=1.1e-13  Score=126.89  Aligned_cols=52  Identities=44%  Similarity=1.051  Sum_probs=48.2

Q ss_pred             CCCcccccccccccCCCceEEeCcCCccchHHHHHHHh-cCCCCccccccccC
Q 020491          264 NEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLY-INATCPLCKYNILK  315 (325)
Q Consensus       264 ~ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~-~~~tCPlCR~~I~~  315 (325)
                      ....+|+|||++|-.+|.++.|||+|.||..|+++|+. -+..||+||.++++
T Consensus       321 ~~GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP  373 (374)
T COG5540         321 DKGVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIPP  373 (374)
T ss_pred             CCCceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCCC
Confidence            34589999999999999999999999999999999998 78899999999975

>PHA02929 N1R/p28-like protein; Provisional

Probab=99.34  E-value=9.4e-13  Score=119.81  Aligned_cols=50  Identities=32%  Similarity=0.758  Sum_probs=41.9

Q ss_pred             CCcccccccccccCCCc----eEE-eCcCCccchHHHHHHHhcCCCCcccccccc
Q 020491          265 EDAECCICLSAYDDGVE----LRE-LPCGHHFHCACVDKWLYINATCPLCKYNIL  314 (325)
Q Consensus       265 ed~~C~ICL~~y~~~~~----lr~-LPC~H~FH~~CI~~WL~~~~tCPlCR~~I~  314 (325)
                      ++.+|+||++.+.+++.    +.. ++|+|.||.+||.+|++.+.+||+||..+.
T Consensus       173 ~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~~~  227 (238)
T PHA02929        173 KDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTPFI  227 (238)
T ss_pred             CCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCCCEee
Confidence            34799999999876541    234 469999999999999999999999999875

>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=99.34  E-value=7.4e-13  Score=99.57  Aligned_cols=45  Identities=44%  Similarity=1.068  Sum_probs=36.6

Q ss_pred             CcccccccccccC----------CCceEEeCcCCccchHHHHHHHhcCCCCcccc
Q 020491          266 DAECCICLSAYDD----------GVELRELPCGHHFHCACVDKWLYINATCPLCK  310 (325)
Q Consensus       266 d~~C~ICL~~y~~----------~~~lr~LPC~H~FH~~CI~~WL~~~~tCPlCR  310 (325)
                      ++.|+||+++|.+          +-.+...+|+|.||..||.+||+.+.+||+||
T Consensus        19 ~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR   73 (73)
T PF12678_consen   19 DDNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNNTCPLCR   73 (73)
T ss_dssp             CSBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred             CCcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCCcCCCCC
Confidence            3469999999943          23456668999999999999999999999997

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....

>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]

Probab=99.18  E-value=1e-11  Score=116.85  Aligned_cols=56  Identities=36%  Similarity=0.965  Sum_probs=47.2

Q ss_pred             cccCCCCCccccccccc-ccCC---------CceEEeCcCCccchHHHHHHHhcCCCCcccccccc
Q 020491          259 EHVLSNEDAECCICLSA-YDDG---------VELRELPCGHHFHCACVDKWLYINATCPLCKYNIL  314 (325)
Q Consensus       259 ~~~~~~ed~~C~ICL~~-y~~~---------~~lr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~I~  314 (325)
                      +.++..+|..|.||+++ ++.+         .+.+.|||||.||..|++.|+++.++||+||.++.
T Consensus       280 ~eql~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERqQTCPICr~p~i  345 (491)
T COG5243         280 EEQLTNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQQTCPICRRPVI  345 (491)
T ss_pred             hhhhcCCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhccCCCcccCccc
Confidence            44556678899999999 5544         24578999999999999999999999999999954

>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.08  E-value=7.9e-11  Score=108.07  Aligned_cols=57  Identities=28%  Similarity=0.725  Sum_probs=48.8

Q ss_pred             CcccCCCCCcccccccccccCCCceEEeCcCCccchHHHHHHHhcCCCCccccccccCCC
Q 020491          258 NEHVLSNEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILKSS  317 (325)
Q Consensus       258 ~~~~~~~ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~I~~~~  317 (325)
                      .+....+.+..|.+||+.-+++   ..+||||+|+..||.+|+..++.||+||....++.
T Consensus       231 ~~~~i~~a~~kC~LCLe~~~~p---SaTpCGHiFCWsCI~~w~~ek~eCPlCR~~~~psk  287 (293)
T KOG0317|consen  231 SLSSIPEATRKCSLCLENRSNP---SATPCGHIFCWSCILEWCSEKAECPLCREKFQPSK  287 (293)
T ss_pred             CCccCCCCCCceEEEecCCCCC---CcCcCcchHHHHHHHHHHccccCCCcccccCCCcc
Confidence            3445556678999999997777   68999999999999999999999999999887653

>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional

Probab=99.05  E-value=1.7e-10  Score=101.21  Aligned_cols=51  Identities=37%  Similarity=0.879  Sum_probs=42.8

Q ss_pred             CCCCcccccccccccCCCceEEeCcCCccchHHHHHHHhc----------------CCCCccccccccCC
Q 020491          263 SNEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYI----------------NATCPLCKYNILKS  316 (325)
Q Consensus       263 ~~ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~~----------------~~tCPlCR~~I~~~  316 (325)
                      ..++.+|+||++.++++   ..++|+|.||..||.+|+..                ...||+||.++...
T Consensus        15 ~~~~~~CpICld~~~dP---VvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~   81 (193)
T PLN03208         15 SGGDFDCNICLDQVRDP---VVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEA   81 (193)
T ss_pred             CCCccCCccCCCcCCCc---EEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChh
Confidence            34568999999998877   67899999999999999852                35799999999653

>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

Probab=99.02  E-value=2.2e-10  Score=76.43  Aligned_cols=44  Identities=50%  Similarity=1.112  Sum_probs=37.0

Q ss_pred             ccccccccccCCCceEEeCcCCccchHHHHHHHhc-CCCCccccccc
Q 020491          268 ECCICLSAYDDGVELRELPCGHHFHCACVDKWLYI-NATCPLCKYNI  313 (325)
Q Consensus       268 ~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~~-~~tCPlCR~~I  313 (325)
                      +|+||++.+  .+.....+|+|.||.+|+++|++. +..||.||..+
T Consensus         1 ~C~iC~~~~--~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~~   45 (45)
T cd00162           1 ECPICLEEF--REPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI   45 (45)
T ss_pred             CCCcCchhh--hCceEecCCCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence            499999998  344455669999999999999997 78899999764

>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A

Probab=98.99  E-value=2.3e-10  Score=79.56  Aligned_cols=47  Identities=40%  Similarity=0.875  Sum_probs=39.7

Q ss_pred             CCcccccccccccCCCceEEeCcCCc-cchHHHHHHHhcCCCCcccccccc
Q 020491          265 EDAECCICLSAYDDGVELRELPCGHH-FHCACVDKWLYINATCPLCKYNIL  314 (325)
Q Consensus       265 ed~~C~ICL~~y~~~~~lr~LPC~H~-FH~~CI~~WL~~~~tCPlCR~~I~  314 (325)
                      |+..|.||++...+   ...+||+|. |+.+|+++|++.+..||+||++|.
T Consensus         1 ~~~~C~iC~~~~~~---~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~   48 (50)
T PF13920_consen    1 EDEECPICFENPRD---VVLLPCGHLCFCEECAERLLKRKKKCPICRQPIE   48 (50)
T ss_dssp             -HSB-TTTSSSBSS---EEEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-S
T ss_pred             CcCCCccCCccCCc---eEEeCCCChHHHHHHhHHhcccCCCCCcCChhhc
Confidence            35689999998554   588999999 999999999999999999999885

...

>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger

Probab=98.93  E-value=6.8e-10  Score=84.85  Aligned_cols=50  Identities=36%  Similarity=0.806  Sum_probs=39.9

Q ss_pred             CCccccccccccc--------CCC--ceEEeCcCCccchHHHHHHHhc---CCCCcccccccc
Q 020491          265 EDAECCICLSAYD--------DGV--ELRELPCGHHFHCACVDKWLYI---NATCPLCKYNIL  314 (325)
Q Consensus       265 ed~~C~ICL~~y~--------~~~--~lr~LPC~H~FH~~CI~~WL~~---~~tCPlCR~~I~  314 (325)
                      +|+.|.||...|+        .|+  .+..-.|+|.||..||.+|+..   +.+||+||++..
T Consensus        20 ~dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~   82 (85)
T PF12861_consen   20 NDDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWK   82 (85)
T ss_pred             CCCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeee
Confidence            4678999999988        223  3444459999999999999985   578999998764

>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A

Probab=98.93  E-value=6.4e-10  Score=73.27  Aligned_cols=39  Identities=44%  Similarity=1.056  Sum_probs=33.8

Q ss_pred             cccccccccCCCceEEeCcCCccchHHHHHHHhcCCCCccc
Q 020491          269 CCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLC  309 (325)
Q Consensus       269 C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~~~~tCPlC  309 (325)
                      |+||++.+.+  .+..++|+|.|+.+|+.+|++.+.+||.|
T Consensus         1 C~iC~~~~~~--~~~~~~CGH~fC~~C~~~~~~~~~~CP~C   39 (39)
T PF13923_consen    1 CPICLDELRD--PVVVTPCGHSFCKECIEKYLEKNPKCPVC   39 (39)
T ss_dssp             ETTTTSB-SS--EEEECTTSEEEEHHHHHHHHHCTSB-TTT
T ss_pred             CCCCCCcccC--cCEECCCCCchhHHHHHHHHHCcCCCcCC
Confidence            8999999877  45688999999999999999999999998

>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.92  E-value=1.2e-09  Score=97.77  Aligned_cols=50  Identities=32%  Similarity=0.714  Sum_probs=42.4

Q ss_pred             CCCcccccccccccCCCceEEeCcCCccchHHHHHHHhc---CCCCccccccccCC
Q 020491          264 NEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYI---NATCPLCKYNILKS  316 (325)
Q Consensus       264 ~ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~~---~~tCPlCR~~I~~~  316 (325)
                      ...-+|.|||+.=+|.   ..+.|+|.|++.||.+||..   +..||+||..|..+
T Consensus        45 ~~~FdCNICLd~akdP---VvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~   97 (230)
T KOG0823|consen   45 GGFFDCNICLDLAKDP---VVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSID   97 (230)
T ss_pred             CCceeeeeeccccCCC---EEeecccceehHHHHHHHhhcCCCeeCCccccccccc
Confidence            4557999999996666   77889999999999999986   35689999998753

>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.91  E-value=4.6e-10  Score=114.53  Aligned_cols=57  Identities=35%  Similarity=0.814  Sum_probs=49.3

Q ss_pred             CCCCCcccccccccccCCCc--eEEeCcCCccchHHHHHHHhcCCCCccccccccCCCC
Q 020491          262 LSNEDAECCICLSAYDDGVE--LRELPCGHHFHCACVDKWLYINATCPLCKYNILKSSS  318 (325)
Q Consensus       262 ~~~ed~~C~ICL~~y~~~~~--lr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~I~~~~~  318 (325)
                      ....+..|.||++++..+++  .+.|||+|.||..|+.+|+++.++||.||..+..+..
T Consensus       287 ~~~~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er~qtCP~CR~~~~~~~~  345 (543)
T KOG0802|consen  287 LALSDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFERQQTCPTCRTVLYDYVL  345 (543)
T ss_pred             hhhcCCeeeeechhhccccccccceeecccchHHHHHHHHHHHhCcCCcchhhhhcccc
Confidence            44567899999999998765  7899999999999999999999999999996655433

>PF14634 zf-RING_5: zinc-RING finger domain

Probab=98.77  E-value=4.9e-09  Score=70.91  Aligned_cols=44  Identities=32%  Similarity=0.773  Sum_probs=39.6

Q ss_pred             ccccccccccCCCceEEeCcCCccchHHHHHHHhcCCCCccccc
Q 020491          268 ECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKY  311 (325)
Q Consensus       268 ~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~~~~tCPlCR~  311 (325)
                      .|.||.++|.++...+.++|+|.|+.+|+++.......||+||+
T Consensus         1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~~~~~~CP~C~k   44 (44)
T PF14634_consen    1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLKGKSVKCPICRK   44 (44)
T ss_pred             CCcCcCccccCCCCeEEcccCCHHHHHHHHhhcCCCCCCcCCCC
Confidence            49999999977778899999999999999999867789999985

>smart00184 RING Ring finger

Probab=98.74  E-value=8.4e-09  Score=66.27  Aligned_cols=38  Identities=50%  Similarity=1.113  Sum_probs=33.2

Q ss_pred             cccccccccCCCceEEeCcCCccchHHHHHHHh-cCCCCccc
Q 020491          269 CCICLSAYDDGVELRELPCGHHFHCACVDKWLY-INATCPLC  309 (325)
Q Consensus       269 C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~-~~~tCPlC  309 (325)
                      |+||++.   ......+||+|.||.+|+++|++ .+..||+|
T Consensus         1 C~iC~~~---~~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C   39 (39)
T smart00184        1 CPICLEE---LKDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC   39 (39)
T ss_pred             CCcCccC---CCCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence            7899988   44568899999999999999998 66789987

E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)

>PHA02926 zinc finger-like protein; Provisional

Probab=98.73  E-value=5.7e-09  Score=92.84  Aligned_cols=51  Identities=25%  Similarity=0.692  Sum_probs=38.2

Q ss_pred             CCcccccccccccCCC-----ceEEe-CcCCccchHHHHHHHhcC------CCCccccccccC
Q 020491          265 EDAECCICLSAYDDGV-----ELREL-PCGHHFHCACVDKWLYIN------ATCPLCKYNILK  315 (325)
Q Consensus       265 ed~~C~ICL~~y~~~~-----~lr~L-PC~H~FH~~CI~~WL~~~------~tCPlCR~~I~~  315 (325)
                      ++.+|+|||+..-+..     .-..| +|+|.||..||++|.+.+      .+||+||.....
T Consensus       169 kE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~  231 (242)
T PHA02926        169 KEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFRN  231 (242)
T ss_pred             CCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceeee
Confidence            4579999998864321     12345 599999999999999853      359999987653

>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.71  E-value=6e-09  Score=69.12  Aligned_cols=39  Identities=51%  Similarity=1.187  Sum_probs=34.6

Q ss_pred             cccccccccCCCceEEeCcCCccchHHHHHHHh--cCCCCccc
Q 020491          269 CCICLSAYDDGVELRELPCGHHFHCACVDKWLY--INATCPLC  309 (325)
Q Consensus       269 C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~--~~~tCPlC  309 (325)
                      |+||++.+.++.  +.++|+|.|+.+|+.+|++  ....||+|
T Consensus         1 C~iC~~~~~~~~--~~~~C~H~fC~~C~~~~~~~~~~~~CP~C   41 (41)
T PF00097_consen    1 CPICLEPFEDPV--ILLPCGHSFCRDCLRKWLENSGSVKCPLC   41 (41)
T ss_dssp             ETTTSSBCSSEE--EETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred             CCcCCccccCCC--EEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence            899999988774  5889999999999999999  55679998

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....

>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.70  E-value=2e-08  Score=97.85  Aligned_cols=50  Identities=28%  Similarity=0.767  Sum_probs=40.6

Q ss_pred             CcccccccccccCC--------------CceEEeCcCCccchHHHHHHHh-cCCCCccccccccC
Q 020491          266 DAECCICLSAYDDG--------------VELRELPCGHHFHCACVDKWLY-INATCPLCKYNILK  315 (325)
Q Consensus       266 d~~C~ICL~~y~~~--------------~~lr~LPC~H~FH~~CI~~WL~-~~~tCPlCR~~I~~  315 (325)
                      ..+|+||+.+.+-.              .....+||+|+||..|+.+|+. .+-.||.||.+++.
T Consensus       571 t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLPp  635 (636)
T KOG0828|consen  571 TNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLPP  635 (636)
T ss_pred             cccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence            36899999987621              1234569999999999999999 67799999998864

>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A

Probab=98.65  E-value=1.7e-08  Score=67.66  Aligned_cols=38  Identities=39%  Similarity=0.989  Sum_probs=30.5

Q ss_pred             cccccccccCCCceEEeCcCCccchHHHHHHHhcC----CCCccc
Q 020491          269 CCICLSAYDDGVELRELPCGHHFHCACVDKWLYIN----ATCPLC  309 (325)
Q Consensus       269 C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~~~----~tCPlC  309 (325)
                      |+||++-|+++   ..|+|+|.|...||.+|.+..    ..||.|
T Consensus         1 CpiC~~~~~~P---v~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C   42 (42)
T PF15227_consen    1 CPICLDLFKDP---VSLPCGHSFCRSCLERLWKEPSGSGFSCPEC   42 (42)
T ss_dssp             ETTTTSB-SSE---EE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred             CCccchhhCCc---cccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence            89999999999   889999999999999999754    369988

>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.62  E-value=9.6e-09  Score=93.41  Aligned_cols=53  Identities=32%  Similarity=0.694  Sum_probs=45.3

Q ss_pred             CCCcccccccccccCCC-------ceEEeCcCCccchHHHHHHHh--cCCCCccccccccCC
Q 020491          264 NEDAECCICLSAYDDGV-------ELRELPCGHHFHCACVDKWLY--INATCPLCKYNILKS  316 (325)
Q Consensus       264 ~ed~~C~ICL~~y~~~~-------~lr~LPC~H~FH~~CI~~WL~--~~~tCPlCR~~I~~~  316 (325)
                      .+|..|++|=..+...+       +...|.|||.||..||..|.-  ++++||-||..+.-+
T Consensus       222 l~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVdl~  283 (328)
T KOG1734|consen  222 LSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLK  283 (328)
T ss_pred             CCcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhhHh
Confidence            45689999999887665       778999999999999999985  689999999887543

>smart00504 Ubox Modified RING finger domain

Probab=98.61  E-value=3.9e-08  Score=71.13  Aligned_cols=46  Identities=26%  Similarity=0.483  Sum_probs=41.6

Q ss_pred             cccccccccccCCCceEEeCcCCccchHHHHHHHhcCCCCccccccccC
Q 020491          267 AECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILK  315 (325)
Q Consensus       267 ~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~I~~  315 (325)
                      -.|+||.+-++++   ..+||||.|...||.+|++.+.+||.|+.++..
T Consensus         2 ~~Cpi~~~~~~~P---v~~~~G~v~~~~~i~~~~~~~~~cP~~~~~~~~   47 (63)
T smart00504        2 FLCPISLEVMKDP---VILPSGQTYERRAIEKWLLSHGTDPVTGQPLTH   47 (63)
T ss_pred             cCCcCCCCcCCCC---EECCCCCEEeHHHHHHHHHHCCCCCCCcCCCCh
Confidence            4699999999987   678999999999999999999999999998854

Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.

>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.60  E-value=2.1e-08  Score=86.26  Aligned_cols=51  Identities=29%  Similarity=0.661  Sum_probs=43.5

Q ss_pred             CCcccccccccccCCCceEEeCcCCccchHHHHHHHhcCCCCccccccccCC
Q 020491          265 EDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILKS  316 (325)
Q Consensus       265 ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~I~~~  316 (325)
                      +-..|+|||+.|.+... ..+.|||+|+++||..-++....||+|++.|.++
T Consensus       130 ~~~~CPiCl~~~sek~~-vsTkCGHvFC~~Cik~alk~~~~CP~C~kkIt~k  180 (187)
T KOG0320|consen  130 GTYKCPICLDSVSEKVP-VSTKCGHVFCSQCIKDALKNTNKCPTCRKKITHK  180 (187)
T ss_pred             cccCCCceecchhhccc-cccccchhHHHHHHHHHHHhCCCCCCcccccchh
Confidence            34789999999887643 3477999999999999999999999999877654

>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins

Probab=98.55  E-value=5.2e-08  Score=67.45  Aligned_cols=42  Identities=33%  Similarity=0.786  Sum_probs=33.7

Q ss_pred             ccccccccccCCCceEEeCcC-----CccchHHHHHHHhc--CCCCcccc
Q 020491          268 ECCICLSAYDDGVELRELPCG-----HHFHCACVDKWLYI--NATCPLCK  310 (325)
Q Consensus       268 ~C~ICL~~y~~~~~lr~LPC~-----H~FH~~CI~~WL~~--~~tCPlCR  310 (325)
                      .|-||++ ++++++....||+     |++|.+|+++|+..  +.+||+|+
T Consensus         1 ~CrIC~~-~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~   49 (49)
T smart00744        1 ICRICHD-EGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK   49 (49)
T ss_pred             CccCCCC-CCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence            4899999 4445555688986     99999999999965  45899995

Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class

>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]

Probab=98.54  E-value=6.1e-08  Score=72.44  Aligned_cols=49  Identities=31%  Similarity=0.623  Sum_probs=36.6

Q ss_pred             ccccccccccc-----------CCCceEE--eCcCCccchHHHHHHHhcCCCCccccccccC
Q 020491          267 AECCICLSAYD-----------DGVELRE--LPCGHHFHCACVDKWLYINATCPLCKYNILK  315 (325)
Q Consensus       267 ~~C~ICL~~y~-----------~~~~lr~--LPC~H~FH~~CI~~WL~~~~tCPlCR~~I~~  315 (325)
                      +.|+||...|.           .+++...  --|+|.||..||.+||..+..||++|+.-.-
T Consensus        21 d~CaICRnhim~~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~Tk~~CPld~q~w~~   82 (88)
T COG5194          21 DVCAICRNHIMGTCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDTKGVCPLDRQTWVL   82 (88)
T ss_pred             chhhhhhccccCcCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhhCCCCCCCCceeEE
Confidence            45666665443           4554333  3499999999999999999999999987543

>TIGR00599 rad18 DNA repair protein rad18

Probab=98.45  E-value=1e-07  Score=93.01  Aligned_cols=49  Identities=29%  Similarity=0.637  Sum_probs=43.4

Q ss_pred             CCcccccccccccCCCceEEeCcCCccchHHHHHHHhcCCCCccccccccCC
Q 020491          265 EDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILKS  316 (325)
Q Consensus       265 ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~I~~~  316 (325)
                      ....|+||++.|.+.   ..+||+|.||..||..|+.....||+||..+...
T Consensus        25 ~~l~C~IC~d~~~~P---vitpCgH~FCs~CI~~~l~~~~~CP~Cr~~~~~~   73 (397)
T TIGR00599        25 TSLRCHICKDFFDVP---VLTSCSHTFCSLCIRRCLSNQPKCPLCRAEDQES   73 (397)
T ss_pred             cccCCCcCchhhhCc---cCCCCCCchhHHHHHHHHhCCCCCCCCCCccccc
Confidence            457999999999877   4689999999999999999888999999988653

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.31  E-value=1.4e-07  Score=69.97  Aligned_cols=49  Identities=35%  Similarity=0.831  Sum_probs=36.8

Q ss_pred             CcccccccccccC--------CCceE-Ee-CcCCccchHHHHHHHhc---CCCCcccccccc
Q 020491          266 DAECCICLSAYDD--------GVELR-EL-PCGHHFHCACVDKWLYI---NATCPLCKYNIL  314 (325)
Q Consensus       266 d~~C~ICL~~y~~--------~~~lr-~L-PC~H~FH~~CI~~WL~~---~~tCPlCR~~I~  314 (325)
                      +.+|-||...|+.        +|..- .+ -|.|.||..||.+|+..   .+.||.||+.-.
T Consensus        20 ~e~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~   81 (84)
T KOG1493|consen   20 DETCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ   81 (84)
T ss_pred             CCccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence            3589999999882        33222 22 39999999999999975   367999998653

>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A

Probab=98.27  E-value=6.3e-07  Score=60.24  Aligned_cols=38  Identities=34%  Similarity=0.746  Sum_probs=23.0

Q ss_pred             cccccccccCCC-ceEEeCcCCccchHHHHHHHhcCC----CCc
Q 020491          269 CCICLSAYDDGV-ELRELPCGHHFHCACVDKWLYINA----TCP  307 (325)
Q Consensus       269 C~ICL~~y~~~~-~lr~LPC~H~FH~~CI~~WL~~~~----tCP  307 (325)
                      |+||.+ |.+++ .-+.|||+|.|..+|++++++.+.    .||
T Consensus         1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP   43 (43)
T PF13445_consen    1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP   43 (43)
T ss_dssp             -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred             CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence            899999 86644 557899999999999999998542    576

>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.26  E-value=6.3e-07  Score=81.73  Aligned_cols=51  Identities=29%  Similarity=0.710  Sum_probs=44.0

Q ss_pred             CCCcccccccccccCCCceEEeCcCCccchHHHHH-HHhcCCC-CccccccccCCC
Q 020491          264 NEDAECCICLSAYDDGVELRELPCGHHFHCACVDK-WLYINAT-CPLCKYNILKSS  317 (325)
Q Consensus       264 ~ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~-WL~~~~t-CPlCR~~I~~~~  317 (325)
                      ..|..|.||++..+..   ..+||+|+|+..||-. |-+++.. ||+||+.+..+.
T Consensus       213 ~~d~kC~lC~e~~~~p---s~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk~  265 (271)
T COG5574         213 LADYKCFLCLEEPEVP---SCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYPKK  265 (271)
T ss_pred             ccccceeeeecccCCc---ccccccchhhHHHHHHHHHhhccccCchhhhhccchh
Confidence            5678999999996666   7899999999999999 9988876 999999876653

>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]

Probab=98.25  E-value=4.9e-07  Score=87.64  Aligned_cols=50  Identities=34%  Similarity=0.950  Sum_probs=41.8

Q ss_pred             CCCCcccccccccccCCC-ceEEeCcCCccchHHHHHHHhcCCCCcccccccc
Q 020491          263 SNEDAECCICLSAYDDGV-ELRELPCGHHFHCACVDKWLYINATCPLCKYNIL  314 (325)
Q Consensus       263 ~~ed~~C~ICL~~y~~~~-~lr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~I~  314 (325)
                      ..|-.+|++||+.+.+.. .++...|+|.||..|+.+|-  ..+||+||+--.
T Consensus       172 ~tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~--~~scpvcR~~q~  222 (493)
T KOG0804|consen  172 LTELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWW--DSSCPVCRYCQS  222 (493)
T ss_pred             cccCCCcchhHhhcCccccceeeeecccccchHHHhhcc--cCcChhhhhhcC
Confidence            345689999999998765 56677799999999999996  678999998655

>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=98.14  E-value=6.3e-07  Score=93.24  Aligned_cols=51  Identities=33%  Similarity=0.781  Sum_probs=38.2

Q ss_pred             CCCcccccccccccCCC---ceEEeC-cCCccchHHHHHHHhc--CCCCcccccccc
Q 020491          264 NEDAECCICLSAYDDGV---ELRELP-CGHHFHCACVDKWLYI--NATCPLCKYNIL  314 (325)
Q Consensus       264 ~ed~~C~ICL~~y~~~~---~lr~LP-C~H~FH~~CI~~WL~~--~~tCPlCR~~I~  314 (325)
                      .+-.+|+||..-..--|   .-...| |.|-||..|+.+|++.  +.+||+||.+++
T Consensus      1467 sG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219        1467 SGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred             CCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence            45679999998776211   111223 7899999999999986  578999998875

>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.10  E-value=1.7e-06  Score=67.87  Aligned_cols=48  Identities=29%  Similarity=0.634  Sum_probs=35.3

Q ss_pred             Cccccccccccc------------CCCceEE--eCcCCccchHHHHHHHhcCCCCccccccc
Q 020491          266 DAECCICLSAYD------------DGVELRE--LPCGHHFHCACVDKWLYINATCPLCKYNI  313 (325)
Q Consensus       266 d~~C~ICL~~y~------------~~~~lr~--LPC~H~FH~~CI~~WL~~~~tCPlCR~~I  313 (325)
                      -+.|+||..-+-            ..++...  --|+|.||--||.+||+.+..||||.++-
T Consensus        46 vDnCAICRnHIMd~CieCQa~~~~~~~EC~VaWG~CNHaFH~hCisrWlktr~vCPLdn~eW  107 (114)
T KOG2930|consen   46 VDNCAICRNHIMDLCIECQANQSATSEECTVAWGVCNHAFHFHCISRWLKTRNVCPLDNKEW  107 (114)
T ss_pred             echhHHHHHHHHHHHHhhccCCCCCCCceEEEeeecchHHHHHHHHHHHhhcCcCCCcCcce
Confidence            367999873321            2233333  24999999999999999999999997653

>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1

Probab=98.02  E-value=3.6e-06  Score=79.27  Aligned_cols=53  Identities=28%  Similarity=0.614  Sum_probs=40.1

Q ss_pred             CCccccccccc-ccCCC-ceEEeCcCCccchHHHHHHHh-cCCCCccccccccCCC
Q 020491          265 EDAECCICLSA-YDDGV-ELRELPCGHHFHCACVDKWLY-INATCPLCKYNILKSS  317 (325)
Q Consensus       265 ed~~C~ICL~~-y~~~~-~lr~LPC~H~FH~~CI~~WL~-~~~tCPlCR~~I~~~~  317 (325)
                      ++..|++|..+ |-+++ .+..-+|+|.||..||+..+. ....||.|+..+.++.
T Consensus         2 d~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~   57 (309)
T TIGR00570         2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLRKNN   57 (309)
T ss_pred             CCCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccchhh
Confidence            34689999986 55554 233337999999999999664 4568999999887764

All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis

Probab=98.01  E-value=3.2e-06  Score=63.39  Aligned_cols=49  Identities=24%  Similarity=0.472  Sum_probs=39.5

Q ss_pred             CCcccccccccccCCCceEEeCcCCccchHHHHHHHhc-CCCCccccccccCC
Q 020491          265 EDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYI-NATCPLCKYNILKS  316 (325)
Q Consensus       265 ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~~-~~tCPlCR~~I~~~  316 (325)
                      +.-.|+|+.+-+.|+   ..+|+||.|-..||.+|++. +.+||+|+..+...
T Consensus         3 ~~f~CpIt~~lM~dP---Vi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~   52 (73)
T PF04564_consen    3 DEFLCPITGELMRDP---VILPSGHTYERSAIERWLEQNGGTDPFTRQPLSES   52 (73)
T ss_dssp             GGGB-TTTSSB-SSE---EEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGG
T ss_pred             cccCCcCcCcHhhCc---eeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcc
Confidence            456899999999998   78999999999999999998 89999999988754

Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....

>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A

Probab=98.01  E-value=1.2e-06  Score=65.22  Aligned_cols=50  Identities=36%  Similarity=0.814  Sum_probs=25.0

Q ss_pred             cccccccccccCCCceEEe-----CcCCccchHHHHHHHhc--C---------CCCccccccccCC
Q 020491          267 AECCICLSAYDDGVELREL-----PCGHHFHCACVDKWLYI--N---------ATCPLCKYNILKS  316 (325)
Q Consensus       267 ~~C~ICL~~y~~~~~lr~L-----PC~H~FH~~CI~~WL~~--~---------~tCPlCR~~I~~~  316 (325)
                      .+|.||.+...+++++-.+     .|++.||..|+.+||..  +         .+||.|+++|.-+
T Consensus         3 ~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~~~   68 (70)
T PF11793_consen    3 LECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPISWS   68 (70)
T ss_dssp             -S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEEGG
T ss_pred             CCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeeeEe
Confidence            5899999987644332222     37899999999999973  1         2599999988643

>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.97  E-value=3.1e-06  Score=80.76  Aligned_cols=44  Identities=41%  Similarity=1.032  Sum_probs=35.4

Q ss_pred             cccccccccccCCCceEEeC-cCCccchHHHHHHHhc---CCCCcccc
Q 020491          267 AECCICLSAYDDGVELRELP-CGHHFHCACVDKWLYI---NATCPLCK  310 (325)
Q Consensus       267 ~~C~ICL~~y~~~~~lr~LP-C~H~FH~~CI~~WL~~---~~tCPlCR  310 (325)
                      +.|.||.+-+....++.... |+|+||..|+.+|+..   +.+||+||
T Consensus         5 A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~   52 (465)
T KOG0827|consen    5 AECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQ   52 (465)
T ss_pred             ceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCcee
Confidence            78999944444444666666 9999999999999985   46899999

>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.92  E-value=9.2e-06  Score=80.32  Aligned_cols=48  Identities=29%  Similarity=0.700  Sum_probs=38.9

Q ss_pred             CcccccccccccCCCceEEeCcCCccchHHHHHHHhcC-----CCCccccccccCC
Q 020491          266 DAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYIN-----ATCPLCKYNILKS  316 (325)
Q Consensus       266 d~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~~~-----~tCPlCR~~I~~~  316 (325)
                      +..|+|||+...-.   ..+-|||+||..||-+.+...     ..||+|+..|..+
T Consensus       186 ~~~CPICL~~~~~p---~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~k  238 (513)
T KOG2164|consen  186 DMQCPICLEPPSVP---VRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLK  238 (513)
T ss_pred             CCcCCcccCCCCcc---cccccCceeeHHHHHHHHhhhcccCCccCCchhhhcccc
Confidence            78999999995544   344599999999999988654     4699999988763

>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.86  E-value=1.3e-05  Score=76.24  Aligned_cols=54  Identities=33%  Similarity=0.678  Sum_probs=44.3

Q ss_pred             CCCCcccccccccccCCCceEEeCcCCc-cchHHHHHHHhcCCCCccccccccCCCCc
Q 020491          263 SNEDAECCICLSAYDDGVELRELPCGHH-FHCACVDKWLYINATCPLCKYNILKSSSN  319 (325)
Q Consensus       263 ~~ed~~C~ICL~~y~~~~~lr~LPC~H~-FH~~CI~~WL~~~~tCPlCR~~I~~~~~~  319 (325)
                      +++..+|-|||++-.|-   ..|||.|. .+.+|.+.-.-+...||+||++|.+--+.
T Consensus       287 ~~~gkeCVIClse~rdt---~vLPCRHLCLCs~Ca~~Lr~q~n~CPICRqpi~~ll~i  341 (349)
T KOG4265|consen  287 SESGKECVICLSESRDT---VVLPCRHLCLCSGCAKSLRYQTNNCPICRQPIEELLEI  341 (349)
T ss_pred             ccCCCeeEEEecCCcce---EEecchhhehhHhHHHHHHHhhcCCCccccchHhhhee
Confidence            35578999999995554   89999998 89999999776788899999999764443

>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]

Probab=97.81  E-value=7e-06  Score=77.19  Aligned_cols=48  Identities=29%  Similarity=0.732  Sum_probs=43.8

Q ss_pred             cccccccccccCCCceEEeCcCCccchHHHHHHHhcCCCCccccccccCCC
Q 020491          267 AECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILKSS  317 (325)
Q Consensus       267 ~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~I~~~~  317 (325)
                      -.|.||.+=|.-+   ..+||+|.|+.-||.+.|..+..||+|+..+.+..
T Consensus        24 LRC~IC~eyf~ip---~itpCsHtfCSlCIR~~L~~~p~CP~C~~~~~Es~   71 (442)
T KOG0287|consen   24 LRCGICFEYFNIP---MITPCSHTFCSLCIRKFLSYKPQCPTCCVTVTESD   71 (442)
T ss_pred             HHHhHHHHHhcCc---eeccccchHHHHHHHHHhccCCCCCceecccchhh
Confidence            5899999999888   78899999999999999999999999999887653

>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.80  E-value=7.5e-06  Score=75.27  Aligned_cols=45  Identities=36%  Similarity=0.827  Sum_probs=40.3

Q ss_pred             CCCcccccccccccCCCceEEeCcCCccchHHHHHHHhcCCCCccccc
Q 020491          264 NEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKY  311 (325)
Q Consensus       264 ~ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~~~~tCPlCR~  311 (325)
                      .+...|+||++.|.+.   +.+||+|.|+..|+..+......||.||.
T Consensus        11 ~~~~~C~iC~~~~~~p---~~l~C~H~~c~~C~~~~~~~~~~Cp~cr~   55 (386)
T KOG2177|consen   11 QEELTCPICLEYFREP---VLLPCGHNFCRACLTRSWEGPLSCPVCRP   55 (386)
T ss_pred             cccccChhhHHHhhcC---ccccccchHhHHHHHHhcCCCcCCcccCC
Confidence            3557999999999999   88999999999999999986678999993

>KOG0825 consensus PHD Zn-finger protein [General function prediction only]

Probab=97.72  E-value=6.6e-06  Score=84.43  Aligned_cols=51  Identities=27%  Similarity=0.528  Sum_probs=45.8

Q ss_pred             CCcccccccccccCCCceEEeCcCCccchHHHHHHHhcCCCCccccccccC
Q 020491          265 EDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILK  315 (325)
Q Consensus       265 ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~I~~  315 (325)
                      ....|++||..+.++...-.-+|+|+||..||+.|-+.-++||+||....+
T Consensus       122 ~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~aqTCPiDR~EF~~  172 (1134)
T KOG0825|consen  122 VENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRCAQTCPVDRGEFGE  172 (1134)
T ss_pred             hhhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhhcccCchhhhhhhe
Confidence            346899999999999887888899999999999999999999999987654

>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]

Probab=97.56  E-value=3.9e-05  Score=70.89  Aligned_cols=46  Identities=28%  Similarity=0.642  Sum_probs=41.7

Q ss_pred             cccccccccccCCCceEEeCcCCccchHHHHHHHhcCCCCccccccccC
Q 020491          267 AECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILK  315 (325)
Q Consensus       267 ~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~I~~  315 (325)
                      ..|-||-+-+.-+   ..++|+|.|+.-||..-|.....||+||.+-.+
T Consensus        26 lrC~IC~~~i~ip---~~TtCgHtFCslCIR~hL~~qp~CP~Cr~~~~e   71 (391)
T COG5432          26 LRCRICDCRISIP---CETTCGHTFCSLCIRRHLGTQPFCPVCREDPCE   71 (391)
T ss_pred             HHhhhhhheeecc---eecccccchhHHHHHHHhcCCCCCccccccHHh
Confidence            5799999998877   678999999999999999999999999988654

>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]

Probab=97.50  E-value=3e-05  Score=71.93  Aligned_cols=52  Identities=29%  Similarity=0.777  Sum_probs=43.4

Q ss_pred             cccccccccccCCCceEEeCcCCccchHHHHHHHh-----------------------cCCCCccccccccCCCC
Q 020491          267 AECCICLSAYDDGVELRELPCGHHFHCACVDKWLY-----------------------INATCPLCKYNILKSSS  318 (325)
Q Consensus       267 ~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~-----------------------~~~tCPlCR~~I~~~~~  318 (325)
                      -.|.|||--|.+++....++|.|+||..|+...|.                       ..+.||+||..|....+
T Consensus       116 gqCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~e~~  190 (368)
T KOG4445|consen  116 GQCVICLYGFASSPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKIEEN  190 (368)
T ss_pred             CceEEEEEeecCCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhcccccc
Confidence            47999999999999999999999999999865543                       13569999999975443

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.40  E-value=0.00011  Score=70.84  Aligned_cols=48  Identities=38%  Similarity=0.912  Sum_probs=37.4

Q ss_pred             CcccccccccccCCC--ceEEeCcCCccchHHHHHHHhc--CCCCccccccc
Q 020491          266 DAECCICLSAYDDGV--ELRELPCGHHFHCACVDKWLYI--NATCPLCKYNI  313 (325)
Q Consensus       266 d~~C~ICL~~y~~~~--~lr~LPC~H~FH~~CI~~WL~~--~~tCPlCR~~I  313 (325)
                      ...|+|||+.|+-..  .+..|.|+|.|-.+||.+||-+  +..||+|+..-
T Consensus         4 g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~ka   55 (463)
T KOG1645|consen    4 GTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKA   55 (463)
T ss_pred             cccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChh
Confidence            368999999998544  3344559999999999999953  35799997643

>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.39  E-value=8.6e-05  Score=71.33  Aligned_cols=53  Identities=28%  Similarity=0.777  Sum_probs=40.4

Q ss_pred             CCCcccccccccccCCC----ceEEeC-cCCccchHHHHHHH--hc-----CCCCccccccccCC
Q 020491          264 NEDAECCICLSAYDDGV----ELRELP-CGHHFHCACVDKWL--YI-----NATCPLCKYNILKS  316 (325)
Q Consensus       264 ~ed~~C~ICL~~y~~~~----~lr~LP-C~H~FH~~CI~~WL--~~-----~~tCPlCR~~I~~~  316 (325)
                      ..+.+|.||++...+..    ....|| |+|.|+.+||++|-  ++     +..||.||......
T Consensus       159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~v  223 (344)
T KOG1039|consen  159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSSFV  223 (344)
T ss_pred             cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccccc
Confidence            45689999999866543    123456 99999999999998  33     46799999876543

>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.28  E-value=5.4e-05  Score=52.77  Aligned_cols=45  Identities=31%  Similarity=0.663  Sum_probs=33.8

Q ss_pred             cccccccccccCCCceEEeCcCCc-cchHHHHHHHh-cCCCCcccccccc
Q 020491          267 AECCICLSAYDDGVELRELPCGHH-FHCACVDKWLY-INATCPLCKYNIL  314 (325)
Q Consensus       267 ~~C~ICL~~y~~~~~lr~LPC~H~-FH~~CI~~WL~-~~~tCPlCR~~I~  314 (325)
                      ++|.||.+.-.|.   ....|+|. .+-+|-.+-++ .+..||+||.+|.
T Consensus         8 dECTICye~pvds---VlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~   54 (62)
T KOG4172|consen    8 DECTICYEHPVDS---VLYTCGHMCMCYACGLRLKKALHGCCPICRAPIK   54 (62)
T ss_pred             cceeeeccCcchH---HHHHcchHHhHHHHHHHHHHccCCcCcchhhHHH
Confidence            7899998874443   34569997 66677655544 7899999999885

>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.20  E-value=6e-05  Score=71.46  Aligned_cols=54  Identities=30%  Similarity=0.556  Sum_probs=44.6

Q ss_pred             CCCcccccccccccCCCceEEeC-cCCccchHHHHHHHhc-CCCCccccccccCCCCcc
Q 020491          264 NEDAECCICLSAYDDGVELRELP-CGHHFHCACVDKWLYI-NATCPLCKYNILKSSSNQ  320 (325)
Q Consensus       264 ~ed~~C~ICL~~y~~~~~lr~LP-C~H~FH~~CI~~WL~~-~~tCPlCR~~I~~~~~~~  320 (325)
                      ..+..|+|||+-++..   +..+ |.|.|+.+||.+=++. +.+||.||+.+..+.+..
T Consensus        41 ~~~v~c~icl~llk~t---mttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~SkrsLr   96 (381)
T KOG0311|consen   41 DIQVICPICLSLLKKT---MTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSKRSLR   96 (381)
T ss_pred             hhhhccHHHHHHHHhh---cccHHHHHHHHHHHHHHHHHhcCCCCchHHhhccccccCC
Confidence            3457899999998776   5566 9999999999999874 789999999987765554

>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.13  E-value=0.0002  Score=66.66  Aligned_cols=48  Identities=27%  Similarity=0.580  Sum_probs=39.8

Q ss_pred             CcccccccccccCCCceEEeCcCCccchHHHHHHHhc-CCCCccccccccCC
Q 020491          266 DAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYI-NATCPLCKYNILKS  316 (325)
Q Consensus       266 d~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~~-~~tCPlCR~~I~~~  316 (325)
                      +++|+||+.+-.-+   ..|+|+|.|+-.||..=.+. +.+||+||.+|.+.
T Consensus         7 ~~eC~IC~nt~n~P---v~l~C~HkFCyiCiKGsy~ndk~~CavCR~pids~   55 (324)
T KOG0824|consen    7 KKECLICYNTGNCP---VNLYCFHKFCYICIKGSYKNDKKTCAVCRFPIDST   55 (324)
T ss_pred             CCcceeeeccCCcC---ccccccchhhhhhhcchhhcCCCCCceecCCCCcc
Confidence            47999999985554   78999999999999876654 56799999999753

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=97.05  E-value=0.00018  Score=68.96  Aligned_cols=48  Identities=31%  Similarity=0.674  Sum_probs=40.0

Q ss_pred             CcccccccccccC-CCceEEeCcCCccchHHHHHHHhcC--CCCccccccc
Q 020491          266 DAECCICLSAYDD-GVELRELPCGHHFHCACVDKWLYIN--ATCPLCKYNI  313 (325)
Q Consensus       266 d~~C~ICL~~y~~-~~~lr~LPC~H~FH~~CI~~WL~~~--~tCPlCR~~I  313 (325)
                      +--|..|=+.|-. ++.+..|||.|+||..|+.+.|.+|  .+||-||+-+
T Consensus       365 ~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~Crklr  415 (518)
T KOG1941|consen  365 ELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCRKLR  415 (518)
T ss_pred             hhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHHHHH
Confidence            3579999988864 4578899999999999999999877  4799999533

>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B

Probab=97.04  E-value=0.00016  Score=52.44  Aligned_cols=47  Identities=21%  Similarity=0.618  Sum_probs=23.4

Q ss_pred             cccccccccccCCCceEEeCcCCccchHHHHHHHhcCCCCccccccccCCC
Q 020491          267 AECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILKSS  317 (325)
Q Consensus       267 ~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~I~~~~  317 (325)
                      -.|++|.+-++++  +....|.|.|++.||.+-+  ...||+|+.+--.++
T Consensus         8 LrCs~C~~~l~~p--v~l~~CeH~fCs~Ci~~~~--~~~CPvC~~Paw~qD   54 (65)
T PF14835_consen    8 LRCSICFDILKEP--VCLGGCEHIFCSSCIRDCI--GSECPVCHTPAWIQD   54 (65)
T ss_dssp             TS-SSS-S--SS---B---SSS--B-TTTGGGGT--TTB-SSS--B-S-SS
T ss_pred             cCCcHHHHHhcCC--ceeccCccHHHHHHhHHhc--CCCCCCcCChHHHHH
Confidence            4699999987766  3345699999999998844  456999998775443

>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length

Probab=96.98  E-value=0.00036  Score=57.97  Aligned_cols=36  Identities=25%  Similarity=0.581  Sum_probs=32.0

Q ss_pred             CcccccccccccCCCceEEeCcC------CccchHHHHHHHh
Q 020491          266 DAECCICLSAYDDGVELRELPCG------HHFHCACVDKWLY  301 (325)
Q Consensus       266 d~~C~ICL~~y~~~~~lr~LPC~------H~FH~~CI~~WL~  301 (325)
                      ..+|.||++...+++.+..++|+      |.||.+|+.+|-+
T Consensus        26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~   67 (134)
T PF05883_consen   26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRR   67 (134)
T ss_pred             CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHh
Confidence            36899999999997788899987      9999999999943

The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.

>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.85  E-value=0.00059  Score=66.93  Aligned_cols=49  Identities=35%  Similarity=0.863  Sum_probs=43.6

Q ss_pred             CCCcccccccccccCCCceEEeCcCCccchHHHHHHHhcCCCCccccccccC
Q 020491          264 NEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILK  315 (325)
Q Consensus       264 ~ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~I~~  315 (325)
                      ..+.+|+||..-+.+.   ..+||+|.|+..||++=+..+..||+||..+.+
T Consensus        82 ~sef~c~vc~~~l~~p---v~tpcghs~c~~Cl~r~ld~~~~cp~Cr~~l~e  130 (398)
T KOG4159|consen   82 RSEFECCVCSRALYPP---VVTPCGHSFCLECLDRSLDQETECPLCRDELVE  130 (398)
T ss_pred             cchhhhhhhHhhcCCC---ccccccccccHHHHHHHhccCCCCccccccccc
Confidence            4568999999988887   677999999999999988889999999999876

>PHA02862 5L protein; Provisional

Probab=96.77  E-value=0.00089  Score=56.08  Aligned_cols=45  Identities=29%  Similarity=0.677  Sum_probs=35.0

Q ss_pred             cccccccccccCCCceEEeCcC-----CccchHHHHHHHhc--CCCCccccccccC
Q 020491          267 AECCICLSAYDDGVELRELPCG-----HHFHCACVDKWLYI--NATCPLCKYNILK  315 (325)
Q Consensus       267 ~~C~ICL~~y~~~~~lr~LPC~-----H~FH~~CI~~WL~~--~~tCPlCR~~I~~  315 (325)
                      +.|=||.++-+++    .-||.     ..-|.+|+.+|++.  +.+||+||.+..-
T Consensus         3 diCWIC~~~~~e~----~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~I   54 (156)
T PHA02862          3 DICWICNDVCDER----NNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNI   54 (156)
T ss_pred             CEEEEecCcCCCC----cccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEE
Confidence            5799999984333    35654     78999999999974  5689999988753

>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]

Probab=96.75  E-value=0.00054  Score=65.99  Aligned_cols=46  Identities=30%  Similarity=0.805  Sum_probs=38.7

Q ss_pred             cccccccccccCCCceEEeCcCCccchHHHHHHHhc--CCCCccccccccC
Q 020491          267 AECCICLSAYDDGVELRELPCGHHFHCACVDKWLYI--NATCPLCKYNILK  315 (325)
Q Consensus       267 ~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~~--~~tCPlCR~~I~~  315 (325)
                      .-|-||-+.   +..++.=||+|..+..|+..|-..  .++||.||.+|..
T Consensus       370 eLCKICaen---dKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKG  417 (563)
T KOG1785|consen  370 ELCKICAEN---DKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKG  417 (563)
T ss_pred             HHHHHhhcc---CCCcccccccchHHHHHHHhhcccCCCCCCCceeeEecc
Confidence            469999776   445678899999999999999854  5899999999864

>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A

Probab=96.69  E-value=0.0011  Score=45.46  Aligned_cols=40  Identities=30%  Similarity=0.853  Sum_probs=28.0

Q ss_pred             cccccccccCCCceEEeCcC-----CccchHHHHHHHhc--CCCCccc
Q 020491          269 CCICLSAYDDGVELRELPCG-----HHFHCACVDKWLYI--NATCPLC  309 (325)
Q Consensus       269 C~ICL~~y~~~~~lr~LPC~-----H~FH~~CI~~WL~~--~~tCPlC  309 (325)
                      |-||+++-++++ .-..||+     .+-|.+|+.+|+..  +.+|++|
T Consensus         1 CrIC~~~~~~~~-~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C   47 (47)
T PF12906_consen    1 CRICLEGEEEDE-PLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC   47 (47)
T ss_dssp             ETTTTEE-SSSS--EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred             CeEeCCcCCCCC-ceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence            679999877666 3457865     48999999999974  5679988

>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]

Probab=96.63  E-value=0.0012  Score=71.94  Aligned_cols=55  Identities=29%  Similarity=0.628  Sum_probs=45.5

Q ss_pred             cCCCCCcccccccccccCCCceEEeCcCCccchHHHHHHHhcC----------CCCccccccccC
Q 020491          261 VLSNEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYIN----------ATCPLCKYNILK  315 (325)
Q Consensus       261 ~~~~ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~~~----------~tCPlCR~~I~~  315 (325)
                      .....|+.|-||..+--......+|-|+|+||..|...-|.++          -.||+|+.+|.+
T Consensus      3481 tkQD~DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH 3545 (3738)
T KOG1428|consen 3481 TKQDADDMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKINH 3545 (3738)
T ss_pred             hhcccCceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhhh
Confidence            3456788999999988788888999999999999998766543          269999998864

>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.56  E-value=0.0019  Score=57.91  Aligned_cols=54  Identities=26%  Similarity=0.575  Sum_probs=44.2

Q ss_pred             CCcccccccccccCCCceEEeCcCCccchHHHHHHHhc--------CCCCccccccccCCCCc
Q 020491          265 EDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYI--------NATCPLCKYNILKSSSN  319 (325)
Q Consensus       265 ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~~--------~~tCPlCR~~I~~~~~~  319 (325)
                      -+..|..|-...+.+|.+| |-|-|.||.+|+++|-..        ...||-|..+|.+..+.
T Consensus        49 Y~pNC~LC~t~La~gdt~R-LvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiFPp~Nl  110 (299)
T KOG3970|consen   49 YNPNCRLCNTPLASGDTTR-LVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIFPPINL  110 (299)
T ss_pred             CCCCCceeCCccccCccee-ehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccCCCccc
Confidence            3467999999999998764 679999999999999763        24699999999876543

>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.56  E-value=0.00078  Score=57.41  Aligned_cols=38  Identities=34%  Similarity=0.748  Sum_probs=34.5

Q ss_pred             CCCcccCCCCCcccccccccccCCCceEEeCcCCccch
Q 020491          256 TPNEHVLSNEDAECCICLSAYDDGVELRELPCGHHFHC  293 (325)
Q Consensus       256 ~~~~~~~~~ed~~C~ICL~~y~~~~~lr~LPC~H~FH~  293 (325)
                      ++++.+++.+.-+|.|||++++.++.+..|||-.+||+
T Consensus       167 sYNdDVL~ddkGECvICLEdL~~GdtIARLPCLCIYHK  204 (205)
T KOG0801|consen  167 SYNDDVLKDDKGECVICLEDLEAGDTIARLPCLCIYHK  204 (205)
T ss_pred             ccccchhcccCCcEEEEhhhccCCCceeccceEEEeec
Confidence            45677888888999999999999999999999999996

>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C

Probab=96.55  E-value=0.0012  Score=47.16  Aligned_cols=40  Identities=25%  Similarity=0.690  Sum_probs=28.7

Q ss_pred             cccccccccccCCCceEEeCcCCccchHHHHHHHhc--CCCCcc
Q 020491          267 AECCICLSAYDDGVELRELPCGHHFHCACVDKWLYI--NATCPL  308 (325)
Q Consensus       267 ~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~~--~~tCPl  308 (325)
                      ..|+|.+..|+++  ++...|+|.|-++.|.+|++.  +..||.
T Consensus        12 ~~CPiT~~~~~~P--V~s~~C~H~fek~aI~~~i~~~~~~~CPv   53 (57)
T PF11789_consen   12 LKCPITLQPFEDP--VKSKKCGHTFEKEAILQYIQRNGSKRCPV   53 (57)
T ss_dssp             SB-TTTSSB-SSE--EEESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred             cCCCCcCChhhCC--cCcCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence            6899999998866  566789999999999999944  456998

>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]

Probab=96.40  E-value=0.0016  Score=64.12  Aligned_cols=52  Identities=31%  Similarity=0.743  Sum_probs=44.1

Q ss_pred             CCCcccccccccccCCCceEEeCcCCccchHHHHHHHhcCCCCccccccccCCC
Q 020491          264 NEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILKSS  317 (325)
Q Consensus       264 ~ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~I~~~~  317 (325)
                      .++..|+||.....++-..  ..|+|.|+..|+.+|+..+..||.|+..+....
T Consensus        19 ~~~l~C~~C~~vl~~p~~~--~~cgh~fC~~C~~~~~~~~~~cp~~~~~~~~~~   70 (391)
T KOG0297|consen   19 DENLLCPICMSVLRDPVQT--TTCGHRFCAGCLLESLSNHQKCPVCRQELTQAE   70 (391)
T ss_pred             cccccCccccccccCCCCC--CCCCCcccccccchhhccCcCCcccccccchhh
Confidence            4568999999999888322  579999999999999999999999988876543

>PHA02825 LAP/PHD finger-like protein; Provisional

Probab=96.17  E-value=0.0041  Score=53.11  Aligned_cols=48  Identities=29%  Similarity=0.661  Sum_probs=35.5

Q ss_pred             CCCcccccccccccCCCceEEeCcC--C---ccchHHHHHHHhc--CCCCccccccccC
Q 020491          264 NEDAECCICLSAYDDGVELRELPCG--H---HFHCACVDKWLYI--NATCPLCKYNILK  315 (325)
Q Consensus       264 ~ed~~C~ICL~~y~~~~~lr~LPC~--H---~FH~~CI~~WL~~--~~tCPlCR~~I~~  315 (325)
                      ..+..|=||.++..  +.  .-||.  .   .-|.+|+++|+..  +.+||+|+++..-
T Consensus         6 ~~~~~CRIC~~~~~--~~--~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i   60 (162)
T PHA02825          6 LMDKCCWICKDEYD--VV--TNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYNI   60 (162)
T ss_pred             CCCCeeEecCCCCC--Cc--cCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEE
Confidence            45578999998843  22  24755  4   6699999999975  4679999887643

>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]

Probab=95.91  E-value=0.0027  Score=55.88  Aligned_cols=44  Identities=25%  Similarity=0.547  Sum_probs=39.2

Q ss_pred             cccccccccccCCCceEEeCcCCccchHHHHHHHhcCCCCccccccc
Q 020491          267 AECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNI  313 (325)
Q Consensus       267 ~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~I  313 (325)
                      -.|.||-.+|+.+   ..+.|+|+|+..|.-+=.+...+|-+|-...
T Consensus       197 F~C~iCKkdy~sp---vvt~CGH~FC~~Cai~~y~kg~~C~~Cgk~t  240 (259)
T COG5152         197 FLCGICKKDYESP---VVTECGHSFCSLCAIRKYQKGDECGVCGKAT  240 (259)
T ss_pred             eeehhchhhccch---hhhhcchhHHHHHHHHHhccCCcceecchhh
Confidence            4899999999998   6788999999999999888899999996643

>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.62  E-value=0.0061  Score=59.22  Aligned_cols=46  Identities=30%  Similarity=0.725  Sum_probs=38.7

Q ss_pred             cccccccccccCCCceEEeCcCCccchHHHHHHHhcC--------CCCcccccc
Q 020491          267 AECCICLSAYDDGVELRELPCGHHFHCACVDKWLYIN--------ATCPLCKYN  312 (325)
Q Consensus       267 ~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~~~--------~tCPlCR~~  312 (325)
                      -.|+||+++....+-...|||+|+|++.|....+.+.        -.||-++..
T Consensus       185 f~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C~  238 (445)
T KOG1814|consen  185 FDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKCG  238 (445)
T ss_pred             ccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCCCc
Confidence            6899999998877888999999999999999998742        358877543

>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1

Probab=95.42  E-value=0.0056  Score=48.55  Aligned_cols=34  Identities=26%  Similarity=0.763  Sum_probs=28.4

Q ss_pred             CCCCcccccccccccCCCceEEeCcCCccchHHHH
Q 020491          263 SNEDAECCICLSAYDDGVELRELPCGHHFHCACVD  297 (325)
Q Consensus       263 ~~ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~  297 (325)
                      .+++..|++|-..+.+ ......||+|.||..|++
T Consensus        75 i~~~~~C~vC~k~l~~-~~f~~~p~~~v~H~~C~~  108 (109)
T PF10367_consen   75 ITESTKCSVCGKPLGN-SVFVVFPCGHVVHYSCIK  108 (109)
T ss_pred             ECCCCCccCcCCcCCC-ceEEEeCCCeEEeccccc
Confidence            3455789999999877 567788999999999975

Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]

Probab=95.28  E-value=0.0057  Score=63.59  Aligned_cols=48  Identities=25%  Similarity=0.609  Sum_probs=39.1

Q ss_pred             cccccccccccCCCceEEeCcCCccchHHHHHHHhc-CCCCccccccccCCC
Q 020491          267 AECCICLSAYDDGVELRELPCGHHFHCACVDKWLYI-NATCPLCKYNILKSS  317 (325)
Q Consensus       267 ~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~~-~~tCPlCR~~I~~~~  317 (325)
                      -.|+.|-..++|-   ....|+|.||-+||.+-+.. ...||.|......++
T Consensus       644 LkCs~Cn~R~Kd~---vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFganD  692 (698)
T KOG0978|consen  644 LKCSVCNTRWKDA---VITKCGHVFCEECVQTRYETRQRKCPKCNAAFGAND  692 (698)
T ss_pred             eeCCCccCchhhH---HHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCccc
Confidence            5899999776665   44559999999999999975 467999998887654

>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B

Probab=95.14  E-value=0.012  Score=40.37  Aligned_cols=44  Identities=25%  Similarity=0.541  Sum_probs=20.5

Q ss_pred             cccccccccCCCceEEeC--cCCccchHHHHHHHh-cCCCCccccccc
Q 020491          269 CCICLSAYDDGVELRELP--CGHHFHCACVDKWLY-INATCPLCKYNI  313 (325)
Q Consensus       269 C~ICL~~y~~~~~lr~LP--C~H~FH~~CI~~WL~-~~~tCPlCR~~I  313 (325)
                      |++|.+++...+ ...+|  |++..+..|...=++ .+..||-||.+.
T Consensus         1 cp~C~e~~d~~d-~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y   47 (48)
T PF14570_consen    1 CPLCDEELDETD-KDFYPCECGFQICRFCYHDILENEGGRCPGCREPY   47 (48)
T ss_dssp             -TTTS-B--CCC-TT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred             CCCcccccccCC-CccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence            789999984333 34455  778888888776664 478899999864

>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.04  E-value=0.0077  Score=56.18  Aligned_cols=46  Identities=24%  Similarity=0.434  Sum_probs=41.4

Q ss_pred             cccccccccccCCCceEEeCcCCccchHHHHHHHhcCCCCccccccccC
Q 020491          267 AECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILK  315 (325)
Q Consensus       267 ~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~I~~  315 (325)
                      ..|-||-..|.++   ..+.|+|+|+..|--+=++....|++|.+.+-.
T Consensus       242 f~c~icr~~f~~p---Vvt~c~h~fc~~ca~~~~qk~~~c~vC~~~t~g  287 (313)
T KOG1813|consen  242 FKCFICRKYFYRP---VVTKCGHYFCEVCALKPYQKGEKCYVCSQQTHG  287 (313)
T ss_pred             ccccccccccccc---hhhcCCceeehhhhccccccCCcceeccccccc
Confidence            4699999999998   788899999999999999999999999887644

>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=94.70  E-value=0.036  Score=51.31  Aligned_cols=51  Identities=27%  Similarity=0.499  Sum_probs=39.0

Q ss_pred             CCCCCcccccccccccCCCceEEeCcCCccchHHHHHHHhcC--CCCcccccccc
Q 020491          262 LSNEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYIN--ATCPLCKYNIL  314 (325)
Q Consensus       262 ~~~ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~~~--~tCPlCR~~I~  314 (325)
                      ..+.+.+|++|=+.=..  .-...+|+|.|+-.||..=+.-.  -+||.|-.++.
T Consensus       235 ~~t~~~~C~~Cg~~Pti--P~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~  287 (298)
T KOG2879|consen  235 TGTSDTECPVCGEPPTI--PHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE  287 (298)
T ss_pred             cccCCceeeccCCCCCC--CeeeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence            34567899999877333  34556799999999999866533  58999998886

>PHA03096 p28-like protein; Provisional

Probab=94.52  E-value=0.018  Score=54.21  Aligned_cols=47  Identities=23%  Similarity=0.379  Sum_probs=33.6

Q ss_pred             cccccccccccCCC----ceEEeC-cCCccchHHHHHHHhcC---CC---Cccccccc
Q 020491          267 AECCICLSAYDDGV----ELRELP-CGHHFHCACVDKWLYIN---AT---CPLCKYNI  313 (325)
Q Consensus       267 ~~C~ICL~~y~~~~----~lr~LP-C~H~FH~~CI~~WL~~~---~t---CPlCR~~I  313 (325)
                      .+|.||++.-....    --..|| |+|.|+..||..|-..+   .+   ||.|+.-+
T Consensus       179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~~~~~~  236 (284)
T PHA03096        179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRRLNTVI  236 (284)
T ss_pred             hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccchhhHH
Confidence            68999998866432    234577 99999999999998743   33   55555443

>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]

Probab=94.51  E-value=0.019  Score=60.26  Aligned_cols=52  Identities=33%  Similarity=0.676  Sum_probs=38.9

Q ss_pred             CCCCCcccccccccccCCCceEEeC-cCCccchHHHHHHHhcC-------CCCccccccc
Q 020491          262 LSNEDAECCICLSAYDDGVELRELP-CGHHFHCACVDKWLYIN-------ATCPLCKYNI  313 (325)
Q Consensus       262 ~~~ed~~C~ICL~~y~~~~~lr~LP-C~H~FH~~CI~~WL~~~-------~tCPlCR~~I  313 (325)
                      ++.+..+|.||.+.+...+.+=.-. |=|+||..||.+|-+..       =.||-|++..
T Consensus       187 l~~~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv~  246 (950)
T KOG1952|consen  187 LSNRKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSVS  246 (950)
T ss_pred             HhcCceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccchh
Confidence            3455679999999988776543332 66999999999998742       2599998543

>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=94.43  E-value=0.0028  Score=60.98  Aligned_cols=51  Identities=24%  Similarity=0.619  Sum_probs=46.5

Q ss_pred             cccccccccccCC-CceEEeCcCCccchHHHHHHHhcCCCCccccccccCCC
Q 020491          267 AECCICLSAYDDG-VELRELPCGHHFHCACVDKWLYINATCPLCKYNILKSS  317 (325)
Q Consensus       267 ~~C~ICL~~y~~~-~~lr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~I~~~~  317 (325)
                      ..|+||-.+|+.. +++..+-|+|.+|.+|+.+||..+..||-|+..+....
T Consensus       197 ~sl~I~~~slK~~y~k~~~~~~g~~~~~~kL~k~L~~~~kl~~~~rel~~~~  248 (465)
T KOG0827|consen  197 GSLSICFESLKQNYDKISAIVCGHIYHHGKLSKWLATKRKLPSCRRELPKNG  248 (465)
T ss_pred             hhhHhhHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHhHHHHhhhhhhh
Confidence            5799999999988 88899999999999999999999999999999987653

>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]

Probab=94.36  E-value=0.017  Score=57.73  Aligned_cols=52  Identities=29%  Similarity=0.666  Sum_probs=40.8

Q ss_pred             CCcccccccccccCCCceEEeCcCCccchHHHHHHHh-----cCCCCccccccccCCCCc
Q 020491          265 EDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLY-----INATCPLCKYNILKSSSN  319 (325)
Q Consensus       265 ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~-----~~~tCPlCR~~I~~~~~~  319 (325)
                      +..+|.+|-+.-++.   .+..|.|.|++-||.+...     .|-+||.|-..+....+.
T Consensus       535 ~~~~C~lc~d~aed~---i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiDlse  591 (791)
T KOG1002|consen  535 GEVECGLCHDPAEDY---IESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSIDLSE  591 (791)
T ss_pred             CceeecccCChhhhh---HhhhhhHHHHHHHHHHHHHhhhcccCCCCccccccccccccc
Confidence            457899998884444   7788999999999988875     367999998877655444

>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function

Probab=94.12  E-value=0.05  Score=46.51  Aligned_cols=37  Identities=30%  Similarity=0.595  Sum_probs=24.3

Q ss_pred             CCcccccccccccCCCc---------eEEeCcC-CccchHHHHHHHh
Q 020491          265 EDAECCICLSAYDDGVE---------LRELPCG-HHFHCACVDKWLY  301 (325)
Q Consensus       265 ed~~C~ICL~~y~~~~~---------lr~LPC~-H~FH~~CI~~WL~  301 (325)
                      ||+.|+|||+-=.+...         .|-.-|+ -+=|..|+|+.-+
T Consensus         1 ed~~CpICme~PHNAVLLlCSS~~kgcRpymc~Ts~rhSNCLdqfkk   47 (162)
T PF07800_consen    1 EDVTCPICMEHPHNAVLLLCSSHEKGCRPYMCDTSYRHSNCLDQFKK   47 (162)
T ss_pred             CCccCceeccCCCceEEEEeccccCCccccccCCccchhHHHHHHHH
Confidence            46899999987554421         2222254 4569999999765

The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.

>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=93.88  E-value=0.051  Score=52.18  Aligned_cols=46  Identities=26%  Similarity=0.548  Sum_probs=33.7

Q ss_pred             CCCcccccccccccCCCceEEeCcCCccchHHHHHHHhcCCCCccccccccC
Q 020491          264 NEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILK  315 (325)
Q Consensus       264 ~ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~I~~  315 (325)
                      +-+..|.||+++..+   ...+||+|.-+  |..-= +...+||+||..|..
T Consensus       303 ~~p~lcVVcl~e~~~---~~fvpcGh~cc--ct~cs-~~l~~CPvCR~rI~~  348 (355)
T KOG1571|consen  303 PQPDLCVVCLDEPKS---AVFVPCGHVCC--CTLCS-KHLPQCPVCRQRIRL  348 (355)
T ss_pred             CCCCceEEecCCccc---eeeecCCcEEE--chHHH-hhCCCCchhHHHHHH
Confidence            344689999999766   47899999854  55543 335569999988753

>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]

Probab=93.63  E-value=0.025  Score=53.64  Aligned_cols=50  Identities=28%  Similarity=0.533  Sum_probs=40.4

Q ss_pred             CCcccccccccccCCCceEEeCcCCccchHHHHHHHhcCCCCccccccccCC
Q 020491          265 EDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILKS  316 (325)
Q Consensus       265 ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~I~~~  316 (325)
                      ....|.+|-.=+-|...  ..-|=|.|++.||-+-|..+.+||.|.-.|.+.
T Consensus        14 ~~itC~LC~GYliDATT--I~eCLHTFCkSCivk~l~~~~~CP~C~i~ih~t   63 (331)
T KOG2660|consen   14 PHITCRLCGGYLIDATT--ITECLHTFCKSCIVKYLEESKYCPTCDIVIHKT   63 (331)
T ss_pred             cceehhhccceeecchh--HHHHHHHHHHHHHHHHHHHhccCCccceeccCc
Confidence            34689999777666632  234999999999999999999999998877654

>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]

Probab=93.45  E-value=0.061  Score=50.80  Aligned_cols=50  Identities=30%  Similarity=0.680  Sum_probs=38.8

Q ss_pred             CcccccccccccCCCc-eEEeCcC-----CccchHHHHHHHh--cCCCCccccccccC
Q 020491          266 DAECCICLSAYDDGVE-LRELPCG-----HHFHCACVDKWLY--INATCPLCKYNILK  315 (325)
Q Consensus       266 d~~C~ICL~~y~~~~~-lr~LPC~-----H~FH~~CI~~WL~--~~~tCPlCR~~I~~  315 (325)
                      +..|=||..+...... .-..||.     +..|..|++.|+.  .+.+|.+|++....
T Consensus        78 ~~~cRIc~~~~~~~~~~~l~~pC~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~~  135 (323)
T KOG1609|consen   78 GPICRICHEEDEESNGLLLISPCSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFIN  135 (323)
T ss_pred             CCcEEEEecccccccccccccCccccCcHHHHHHHHHHhhhccccCeeeeccccccee
Confidence            5789999998654432 4567876     7789999999998  56789999886644

>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=93.45  E-value=0.045  Score=52.32  Aligned_cols=48  Identities=27%  Similarity=0.629  Sum_probs=41.8

Q ss_pred             CCCcccccccccccCCCceEEeCcCCccchHHHHHHHhcCCCCcccccccc
Q 020491          264 NEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNIL  314 (325)
Q Consensus       264 ~ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~I~  314 (325)
                      .||..|+||...   +-.-.-.||+|-=+..||.+-+..+..|=.||..+.
T Consensus       420 sEd~lCpICyA~---pi~Avf~PC~H~SC~~CI~qHlmN~k~CFfCktTv~  467 (489)
T KOG4692|consen  420 SEDNLCPICYAG---PINAVFAPCSHRSCYGCITQHLMNCKRCFFCKTTVI  467 (489)
T ss_pred             cccccCcceecc---cchhhccCCCCchHHHHHHHHHhcCCeeeEecceee
Confidence            578899999766   444467899999999999999999999999998876

>KOG1940 consensus Zn-finger protein [General function prediction only]

Probab=93.31  E-value=0.041  Score=51.43  Aligned_cols=45  Identities=29%  Similarity=0.649  Sum_probs=38.9

Q ss_pred             cccccccccccCCC-ceEEeCcCCccchHHHHHHHhcCCCCccccc
Q 020491          267 AECCICLSAYDDGV-ELRELPCGHHFHCACVDKWLYINATCPLCKY  311 (325)
Q Consensus       267 ~~C~ICL~~y~~~~-~lr~LPC~H~FH~~CI~~WL~~~~tCPlCR~  311 (325)
                      ..|+||.+.+-+.. .+..++|+|.-|..|..+-...+-+||+|..
T Consensus       159 ~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~y~CP~C~~  204 (276)
T KOG1940|consen  159 FNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEGYTCPICSK  204 (276)
T ss_pred             CCCchhHHHhccccccCCccCcccchHHHHHHHHhccCCCCCcccc
Confidence            45999998877655 5678999999999999998888899999988

>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=93.27  E-value=0.018  Score=53.66  Aligned_cols=44  Identities=30%  Similarity=0.707  Sum_probs=33.5

Q ss_pred             CCcccccccccccCCCceEEeCcCCc-cchHHHHHHHhcCCCCccccccccC
Q 020491          265 EDAECCICLSAYDDGVELRELPCGHH-FHCACVDKWLYINATCPLCKYNILK  315 (325)
Q Consensus       265 ed~~C~ICL~~y~~~~~lr~LPC~H~-FH~~CI~~WL~~~~tCPlCR~~I~~  315 (325)
                      .+.-|.||++.   +-....|+|+|. =+.+|-..    -+.||+||+.|.+
T Consensus       299 ~~~LC~ICmDa---P~DCvfLeCGHmVtCt~CGkr----m~eCPICRqyi~r  343 (350)
T KOG4275|consen  299 TRRLCAICMDA---PRDCVFLECGHMVTCTKCGKR----MNECPICRQYIVR  343 (350)
T ss_pred             HHHHHHHHhcC---CcceEEeecCcEEeehhhccc----cccCchHHHHHHH
Confidence            37889999988   556689999996 45566433    3589999988754

>KOG3039 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.23  E-value=0.1  Score=47.62  Aligned_cols=53  Identities=17%  Similarity=0.297  Sum_probs=46.6

Q ss_pred             CCcccccccccccCCCceEEe-CcCCccchHHHHHHHhcCCCCccccccccCCC
Q 020491          265 EDAECCICLSAYDDGVELREL-PCGHHFHCACVDKWLYINATCPLCKYNILKSS  317 (325)
Q Consensus       265 ed~~C~ICL~~y~~~~~lr~L-PC~H~FH~~CI~~WL~~~~tCPlCR~~I~~~~  317 (325)
                      ....|++|.+.+.+...+..| ||+|+|..+|+.+..+....||+|-.++.+.+
T Consensus       220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~plkdrd  273 (303)
T KOG3039|consen  220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPLKDRD  273 (303)
T ss_pred             cceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCCcCcccc
Confidence            457899999999999988888 59999999999999999999999988776543

>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=92.12  E-value=0.1  Score=45.36  Aligned_cols=53  Identities=32%  Similarity=0.720  Sum_probs=35.8

Q ss_pred             cccccccccccCCC----ceEEeCcCCccchHHHHHHHhc----C-------CCCccccccccCCCCc
Q 020491          267 AECCICLSAYDDGV----ELRELPCGHHFHCACVDKWLYI----N-------ATCPLCKYNILKSSSN  319 (325)
Q Consensus       267 ~~C~ICL~~y~~~~----~lr~LPC~H~FH~~CI~~WL~~----~-------~tCPlCR~~I~~~~~~  319 (325)
                      -.|.||..---+|.    ..--..|+.-||.-|+..||+.    +       ..||.|..+|.-+.++
T Consensus       166 ~~cgicyayqldGTipDqtCdN~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~PialKmSg  233 (234)
T KOG3268|consen  166 GACGICYAYQLDGTIPDQTCDNIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIALKMSG  233 (234)
T ss_pred             hcccceeeeecCCccccccccccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcceeeccC
Confidence            45777754222322    2233569999999999999973    1       4699999998765543

>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=91.84  E-value=0.08  Score=47.70  Aligned_cols=39  Identities=26%  Similarity=0.608  Sum_probs=29.7

Q ss_pred             cccccccccCCCceEEeCcCCc-cchHHHHHHHhcCCCCcccccccc
Q 020491          269 CCICLSAYDDGVELRELPCGHH-FHCACVDKWLYINATCPLCKYNIL  314 (325)
Q Consensus       269 C~ICL~~y~~~~~lr~LPC~H~-FH~~CI~~WL~~~~tCPlCR~~I~  314 (325)
                      |-.|-++   +..+..|||+|+ ++..|=..    -.+||+|+....
T Consensus       161 Cr~C~~~---~~~VlllPCrHl~lC~~C~~~----~~~CPiC~~~~~  200 (207)
T KOG1100|consen  161 CRKCGER---EATVLLLPCRHLCLCGICDES----LRICPICRSPKT  200 (207)
T ss_pred             ceecCcC---CceEEeecccceEeccccccc----CccCCCCcChhh
Confidence            8888666   667889999986 77778665    345999988654

>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=91.70  E-value=0.068  Score=36.37  Aligned_cols=33  Identities=21%  Similarity=0.549  Sum_probs=23.6

Q ss_pred             EeCcC-CccchHHHHHHHhcCCCCccccccccCC
Q 020491          284 ELPCG-HHFHCACVDKWLYINATCPLCKYNILKS  316 (325)
Q Consensus       284 ~LPC~-H~FH~~CI~~WL~~~~tCPlCR~~I~~~  316 (325)
                      ...|+ |+.+..|+..-|.++..||+|+.+++.+
T Consensus        15 Li~C~dHYLCl~CLt~ml~~s~~C~iC~~~LPtk   48 (50)
T PF03854_consen   15 LIKCSDHYLCLNCLTLMLSRSDRCPICGKPLPTK   48 (50)
T ss_dssp             EEE-SS-EEEHHHHHHT-SSSSEETTTTEE----
T ss_pred             eeeecchhHHHHHHHHHhccccCCCcccCcCccc
Confidence            34586 9999999999999999999999998754

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.

>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=91.62  E-value=0.09  Score=49.26  Aligned_cols=45  Identities=29%  Similarity=0.763  Sum_probs=35.0

Q ss_pred             cccccccccccCCCceEEeC-cCCccchHHHHHHHh-cCCCCccc-ccccc
Q 020491          267 AECCICLSAYDDGVELRELP-CGHHFHCACVDKWLY-INATCPLC-KYNIL  314 (325)
Q Consensus       267 ~~C~ICL~~y~~~~~lr~LP-C~H~FH~~CI~~WL~-~~~tCPlC-R~~I~  314 (325)
                      ..|+.|-.-..+.   ..+| |+|.|+.+||..=|. ....||.| |.+|.
T Consensus       275 LkCplc~~Llrnp---~kT~cC~~~fc~eci~~al~dsDf~CpnC~rkdvl  322 (427)
T COG5222         275 LKCPLCHCLLRNP---MKTPCCGHTFCDECIGTALLDSDFKCPNCSRKDVL  322 (427)
T ss_pred             ccCcchhhhhhCc---ccCccccchHHHHHHhhhhhhccccCCCcccccch
Confidence            5799988776666   4567 889999999997665 56789999 55554

>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]

Probab=91.06  E-value=0.4  Score=45.64  Aligned_cols=49  Identities=22%  Similarity=0.537  Sum_probs=38.1

Q ss_pred             cCCCCCcccccccccccCCCceEEeC-cCCccchHHHHHHHhcCCCCcccccc
Q 020491          261 VLSNEDAECCICLSAYDDGVELRELP-CGHHFHCACVDKWLYINATCPLCKYN  312 (325)
Q Consensus       261 ~~~~ed~~C~ICL~~y~~~~~lr~LP-C~H~FH~~CI~~WL~~~~tCPlCR~~  312 (325)
                      .++.++..|++|+..-.++   ..+. =|-+||-.||-+.++..+.||+=-.+
T Consensus       295 ~l~~~~~~CpvClk~r~Np---tvl~vSGyVfCY~Ci~~Yv~~~~~CPVT~~p  344 (357)
T KOG0826|consen  295 LLPPDREVCPVCLKKRQNP---TVLEVSGYVFCYPCIFSYVVNYGHCPVTGYP  344 (357)
T ss_pred             cCCCccccChhHHhccCCC---ceEEecceEEeHHHHHHHHHhcCCCCccCCc
Confidence            3455678999999996665   3343 47999999999999999999975443

>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO)

Probab=90.96  E-value=0.095  Score=35.09  Aligned_cols=41  Identities=24%  Similarity=0.647  Sum_probs=21.4

Q ss_pred             cccccccccCCCceEEeCcCCccchHHHHHHHhcCC--CCccc
Q 020491          269 CCICLSAYDDGVELRELPCGHHFHCACVDKWLYINA--TCPLC  309 (325)
Q Consensus       269 C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~~~~--tCPlC  309 (325)
                      |.+|-+-...|.....-.|+=.+|..|++++++...  .||.|
T Consensus         1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C   43 (43)
T PF08746_consen    1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC   43 (43)
T ss_dssp             -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred             CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence            455555555553222223887899999999998655  79987

; PDB: 3NW0_A 2CT0_A.

>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=90.61  E-value=0.17  Score=47.67  Aligned_cols=47  Identities=34%  Similarity=0.670  Sum_probs=39.0

Q ss_pred             cccccccccccCCC---ceEEeCcCCccchHHHHHHHhc-CCCCccccccc
Q 020491          267 AECCICLSAYDDGV---ELRELPCGHHFHCACVDKWLYI-NATCPLCKYNI  313 (325)
Q Consensus       267 ~~C~ICL~~y~~~~---~lr~LPC~H~FH~~CI~~WL~~-~~tCPlCR~~I  313 (325)
                      .+|-||=++|..++   ..|.|.|+|.|...|+.+-+.. ...||.||...
T Consensus         4 ~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~   54 (296)
T KOG4185|consen    4 PECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGNSRILCPFCRETT   54 (296)
T ss_pred             CceeecCccccccCcccCCcccccCceehHhHHHHHhcCceeeccCCCCcc
Confidence            47999999999774   3566779999999999987765 35799999984

>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]

Probab=89.76  E-value=0.11  Score=48.88  Aligned_cols=32  Identities=31%  Similarity=0.751  Sum_probs=25.2

Q ss_pred             eEEeCcCCccchHHHHHHHhcCCCCccccccccC
Q 020491          282 LRELPCGHHFHCACVDKWLYINATCPLCKYNILK  315 (325)
Q Consensus       282 lr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~I~~  315 (325)
                      -|..||+|+|+.+|-..  .....||+|-..|.+
T Consensus       104 GRmIPCkHvFCl~CAr~--~~dK~Cp~C~d~Vqr  135 (389)
T KOG2932|consen  104 GRMIPCKHVFCLECARS--DSDKICPLCDDRVQR  135 (389)
T ss_pred             ecccccchhhhhhhhhc--CccccCcCcccHHHH
Confidence            37899999999999754  335689999777654

>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]

Probab=89.66  E-value=0.28  Score=51.63  Aligned_cols=56  Identities=21%  Similarity=0.555  Sum_probs=41.4

Q ss_pred             cCCCCCcccccccccccCCCceEEeCcC-----CccchHHHHHHHhcC--CCCccccccccCCC
Q 020491          261 VLSNEDAECCICLSAYDDGVELRELPCG-----HHFHCACVDKWLYIN--ATCPLCKYNILKSS  317 (325)
Q Consensus       261 ~~~~ed~~C~ICL~~y~~~~~lr~LPC~-----H~FH~~CI~~WL~~~--~tCPlCR~~I~~~~  317 (325)
                      +..++++.|-||..+=..++++ --||.     ...|.+|+.+|+.-+  ..|-+|++++.-++
T Consensus         7 ~mN~d~~~CRICr~e~~~d~pL-fhPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~Fk~   69 (1175)
T COG5183           7 PMNEDKRSCRICRTEDIRDDPL-FHPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYKFKD   69 (1175)
T ss_pred             CCCccchhceeecCCCCCCCcC-cccccccchhHHHHHHHHHHHHhcCCCcceeeecceeeeee
Confidence            3456778999999886555543 34655     679999999999744  46999999886443

>PF04641 Rtf2: Rtf2 RING-finger

Probab=89.42  E-value=0.43  Score=44.39  Aligned_cols=52  Identities=17%  Similarity=0.406  Sum_probs=41.2

Q ss_pred             CCCcccccccccccCCCceEEe-CcCCccchHHHHHHHhcCCCCccccccccCC
Q 020491          264 NEDAECCICLSAYDDGVELREL-PCGHHFHCACVDKWLYINATCPLCKYNILKS  316 (325)
Q Consensus       264 ~ed~~C~ICL~~y~~~~~lr~L-PC~H~FH~~CI~~WL~~~~tCPlCR~~I~~~  316 (325)
                      .....|+|...+|........| ||||+|-..++++- +....||+|-.+....
T Consensus       111 ~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~-k~~~~Cp~c~~~f~~~  163 (260)
T PF04641_consen  111 EGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKEL-KKSKKCPVCGKPFTEE  163 (260)
T ss_pred             CceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhh-cccccccccCCccccC
Confidence            3447899999999776666666 79999999999996 3456799998876543

>PF14447 Prok-RING_4: Prokaryotic RING finger family 4

Probab=89.15  E-value=0.22  Score=35.04  Aligned_cols=46  Identities=26%  Similarity=0.525  Sum_probs=32.8

Q ss_pred             cccccccccccCCCceEEeCcCCccchHHHHHHHhcCCCCccccccccCCC
Q 020491          267 AECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILKSS  317 (325)
Q Consensus       267 ~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~I~~~~  317 (325)
                      ..|-.|...   +.+-..+||+|.-...|.+-+  +-+-||+|-.++..++
T Consensus         8 ~~~~~~~~~---~~~~~~~pCgH~I~~~~f~~~--rYngCPfC~~~~~~~~   53 (55)
T PF14447_consen    8 QPCVFCGFV---GTKGTVLPCGHLICDNCFPGE--RYNGCPFCGTPFEFDD   53 (55)
T ss_pred             eeEEEcccc---ccccccccccceeeccccChh--hccCCCCCCCcccCCC
Confidence            345555444   334478999999999997764  4567999988886543

>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=88.72  E-value=0.13  Score=52.70  Aligned_cols=45  Identities=36%  Similarity=0.593  Sum_probs=35.6

Q ss_pred             cccccccccccCCC-ceEEeCcCCccchHHHHHHHhcCCCCcccccccc
Q 020491          267 AECCICLSAYDDGV-ELRELPCGHHFHCACVDKWLYINATCPLCKYNIL  314 (325)
Q Consensus       267 ~~C~ICL~~y~~~~-~lr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~I~  314 (325)
                      ..|.||+..|.... +-+-|-|+|.-+..|+..  ..|++|| |+.+=.
T Consensus        12 l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~--lyn~scp-~~~De~   57 (861)
T KOG3161|consen   12 LLCDICLNLFVVQRLEPVSLQCGHTICGHCVQL--LYNASCP-TKRDED   57 (861)
T ss_pred             hhchHHHHHHHHHhcCcccccccchHHHHHHHh--HhhccCC-CCcccc
Confidence            57999999988765 445566999999999987  4588999 877643

>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=88.47  E-value=0.7  Score=44.32  Aligned_cols=46  Identities=35%  Similarity=0.862  Sum_probs=35.0

Q ss_pred             CCCcccccccccccCCCceEEeCcCCccchHHHHHH--HhcCCCCcccccc
Q 020491          264 NEDAECCICLSAYDDGVELRELPCGHHFHCACVDKW--LYINATCPLCKYN  312 (325)
Q Consensus       264 ~ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~W--L~~~~tCPlCR~~  312 (325)
                      ++...|-||-....-   .-.+||+|-.+--|--.-  |.....||+||.+
T Consensus        59 Een~~C~ICA~~~TY---s~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE  106 (493)
T COG5236          59 EENMNCQICAGSTTY---SARYPCGHQICHACAVRLRALYMQKGCPLCRTE  106 (493)
T ss_pred             cccceeEEecCCceE---EEeccCCchHHHHHHHHHHHHHhccCCCccccc
Confidence            445689999877443   368999999988897553  3467889999975

>PF14446 Prok-RING_1: Prokaryotic RING finger family 1

Probab=88.44  E-value=0.71  Score=32.47  Aligned_cols=43  Identities=28%  Similarity=0.739  Sum_probs=34.4

Q ss_pred             CcccccccccccCCCceEEeC-cCCccchHHHHHHHhcCCCCcc--cccc
Q 020491          266 DAECCICLSAYDDGVELRELP-CGHHFHCACVDKWLYINATCPL--CKYN  312 (325)
Q Consensus       266 d~~C~ICL~~y~~~~~lr~LP-C~H~FH~~CI~~WL~~~~tCPl--CR~~  312 (325)
                      ...|.+|-+.|.+++.+..-| |+-.+|.+|-++    ...|-.  |..+
T Consensus         5 ~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~----~g~C~~~~c~~~   50 (54)
T PF14446_consen    5 GCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK----AGGCINYSCGTG   50 (54)
T ss_pred             CccChhhCCcccCCCCEEECCCCCCcccHHHHhh----CCceEeccCCCC
Confidence            367999999999888888998 999999999554    566654  5443

>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=87.27  E-value=0.33  Score=49.92  Aligned_cols=51  Identities=33%  Similarity=0.865  Sum_probs=41.7

Q ss_pred             cCCCCCcccccccccccCCCceEEeCcCCccchHHHHHHHhcCCCCccccccccCCCC
Q 020491          261 VLSNEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILKSSS  318 (325)
Q Consensus       261 ~~~~ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~I~~~~~  318 (325)
                      .+.+....|.||+.+.    ..+..+|.   |..|..+|+..+..||+|...+..+..
T Consensus       474 ~l~~~~~~~~~~~~~~----~~~~~~~~---~~~~l~~~~~~~~~~pl~~~~~~~~~~  524 (543)
T KOG0802|consen  474 QLREPNDVCAICYQEM----SARITPCS---HALCLRKWLYVQEVCPLCHTYMKEDDF  524 (543)
T ss_pred             hhhcccCcchHHHHHH----Hhcccccc---chhHHHhhhhhccccCCCchhhhcccc
Confidence            3445567899999997    55778899   999999999999999999887765443

>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]

Probab=86.65  E-value=0.34  Score=51.62  Aligned_cols=36  Identities=25%  Similarity=0.552  Sum_probs=28.5

Q ss_pred             CCCcccccccccccCCCceEEeCcCCccchHHHHHHH
Q 020491          264 NEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWL  300 (325)
Q Consensus       264 ~ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL  300 (325)
                      +.++.|.+|...+... .-..-||+|.||.+|+.+=.
T Consensus       815 ep~d~C~~C~~~ll~~-pF~vf~CgH~FH~~Cl~~~v  850 (911)
T KOG2034|consen  815 EPQDSCDHCGRPLLIK-PFYVFPCGHCFHRDCLIRHV  850 (911)
T ss_pred             cCccchHHhcchhhcC-cceeeeccchHHHHHHHHHH
Confidence            4457899998887665 55678999999999996643

>COG5175 MOT2 Transcriptional repressor [Transcription]

Probab=86.54  E-value=0.46  Score=45.41  Aligned_cols=52  Identities=23%  Similarity=0.561  Sum_probs=35.9

Q ss_pred             CCCcccccccccccCCC-ceEEeCcCCccchHHHHHHH-hcCCCCccccccccC
Q 020491          264 NEDAECCICLSAYDDGV-ELRELPCGHHFHCACVDKWL-YINATCPLCKYNILK  315 (325)
Q Consensus       264 ~ed~~C~ICL~~y~~~~-~lr~LPC~H~FH~~CI~~WL-~~~~tCPlCR~~I~~  315 (325)
                      .|++-|+.|+++++-.| ...-.||+-..+.-|-..-- ..|..||-||....+
T Consensus        12 deed~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~d   65 (480)
T COG5175          12 DEEDYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYDD   65 (480)
T ss_pred             cccccCcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhccc
Confidence            34566999999998666 34556788666666643322 247899999987654

>KOG3053 consensus Uncharacterized conserved protein [Function unknown]

Probab=86.54  E-value=0.32  Score=44.72  Aligned_cols=54  Identities=22%  Similarity=0.608  Sum_probs=37.9

Q ss_pred             CCcccccccccccCCCce-EEeCcC-----CccchHHHHHHHhcCC--------CCccccccccCCCC
Q 020491          265 EDAECCICLSAYDDGVEL-RELPCG-----HHFHCACVDKWLYINA--------TCPLCKYNILKSSS  318 (325)
Q Consensus       265 ed~~C~ICL~~y~~~~~l-r~LPC~-----H~FH~~CI~~WL~~~~--------tCPlCR~~I~~~~~  318 (325)
                      .+..|=||+..=+|+..- =.-||.     |.-|..|+..|...+.        +||-|+.+....-+
T Consensus        19 ~eR~CWiCF~TdeDn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEYiiv~P   86 (293)
T KOG3053|consen   19 LERCCWICFATDEDNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEYIIVFP   86 (293)
T ss_pred             cceeEEEEeccCcccchhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchheeecc
Confidence            457899999884444211 134653     9999999999996542        59999988765433

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=86.38  E-value=0.43  Score=49.96  Aligned_cols=26  Identities=31%  Similarity=0.708  Sum_probs=23.0

Q ss_pred             EEeCcCCccchHHHHHHHhcCCCCcc
Q 020491          283 RELPCGHHFHCACVDKWLYINATCPL  308 (325)
Q Consensus       283 r~LPC~H~FH~~CI~~WL~~~~tCPl  308 (325)
                      ....|+|..|..|..+|+++...||-
T Consensus      1044 ~Cg~C~Hv~H~sc~~eWf~~gd~Cps 1069 (1081)
T KOG0309|consen 1044 FCGTCGHVGHTSCMMEWFRTGDVCPS 1069 (1081)
T ss_pred             hhccccccccHHHHHHHHhcCCcCCC
Confidence            34568999999999999999999984

>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]

Probab=86.28  E-value=0.32  Score=51.25  Aligned_cols=47  Identities=32%  Similarity=0.650  Sum_probs=37.8

Q ss_pred             cccccccccccCCCceEEeCcCCccchHHHHHHHhc--CCCCccccccccCCC
Q 020491          267 AECCICLSAYDDGVELRELPCGHHFHCACVDKWLYI--NATCPLCKYNILKSS  317 (325)
Q Consensus       267 ~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~~--~~tCPlCR~~I~~~~  317 (325)
                      ..|.||++    .+.....+|+|.|+.+|+.+=+..  ++.||+||..+....
T Consensus       455 ~~c~ic~~----~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~~  503 (674)
T KOG1001|consen  455 HWCHICCD----LDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKEKK  503 (674)
T ss_pred             cccccccc----cccceeecccchHHHHHHHhccccccCCCCcHHHHHHHHHH
Confidence            78999999    455578899999999999887753  456999998876543

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=85.61  E-value=0.42  Score=50.67  Aligned_cols=42  Identities=26%  Similarity=0.720  Sum_probs=32.7

Q ss_pred             cccccccccccCCCceEEeCcCCccchHHHHHHHhcCCCCccccccc
Q 020491          267 AECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNI  313 (325)
Q Consensus       267 ~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~I  313 (325)
                      ..|..|--..+-+.  .---|+|.||..|+.   .....||-|+-+.
T Consensus       841 skCs~C~~~LdlP~--VhF~CgHsyHqhC~e---~~~~~CP~C~~e~  882 (933)
T KOG2114|consen  841 SKCSACEGTLDLPF--VHFLCGHSYHQHCLE---DKEDKCPKCLPEL  882 (933)
T ss_pred             eeecccCCccccce--eeeecccHHHHHhhc---cCcccCCccchhh
Confidence            58999987765552  344599999999998   5567899998844

>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans

Probab=84.26  E-value=1.9  Score=42.01  Aligned_cols=28  Identities=25%  Similarity=0.821  Sum_probs=21.4

Q ss_pred             cCCccchHHHHHHHhc-------------CCCCcccccccc
Q 020491          287 CGHHFHCACVDKWLYI-------------NATCPLCKYNIL  314 (325)
Q Consensus       287 C~H~FH~~CI~~WL~~-------------~~tCPlCR~~I~  314 (325)
                      |.-..+.+|+.+|+-.             +.+||.||+...
T Consensus       311 CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FC  351 (358)
T PF10272_consen  311 CRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFC  351 (358)
T ss_pred             ccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccce
Confidence            4567889999998853             347999998754

They are purported to be transmembrane protein-precursors but their function is unknown.

>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]

Probab=82.79  E-value=0.33  Score=50.60  Aligned_cols=47  Identities=36%  Similarity=0.675  Sum_probs=39.3

Q ss_pred             cccccccccccCCCceEEeCcCCccchHHHHHHHhc---CCCCccccccccCC
Q 020491          267 AECCICLSAYDDGVELRELPCGHHFHCACVDKWLYI---NATCPLCKYNILKS  316 (325)
Q Consensus       267 ~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~~---~~tCPlCR~~I~~~  316 (325)
                      .+|+||+..|.++   ..+.|.|.|...|+..=|..   ...||+|+..+.+.
T Consensus        22 lEc~ic~~~~~~p---~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~eK~   71 (684)
T KOG4362|consen   22 LECPICLEHVKEP---SLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIEKR   71 (684)
T ss_pred             ccCCceeEEeecc---chhhhhHHHHhhhhhceeeccCccccchhhhhhhhhh
Confidence            6899999999988   56789999999999876654   35799999887654

>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]

Probab=81.77  E-value=0.5  Score=52.28  Aligned_cols=47  Identities=34%  Similarity=0.758  Sum_probs=39.1

Q ss_pred             CcccccccccccCCCceEEeCcCCccchHHHHHHHhcCCCCcccccccc
Q 020491          266 DAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNIL  314 (325)
Q Consensus       266 d~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~I~  314 (325)
                      ...|.||++...+..  ....|+|.+++.|...|+..+..||.|+....
T Consensus      1153 ~~~c~ic~dil~~~~--~I~~cgh~~c~~c~~~~l~~~s~~~~~ksi~~ 1199 (1394)
T KOG0298|consen 1153 HFVCEICLDILRNQG--GIAGCGHEPCCRCDELWLYASSRCPICKSIKG 1199 (1394)
T ss_pred             ccchHHHHHHHHhcC--CeeeechhHhhhHHHHHHHHhccCcchhhhhh
Confidence            458999999988432  34569999999999999999999999986443

>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins

Probab=80.61  E-value=7.9  Score=31.35  Aligned_cols=25  Identities=24%  Similarity=0.271  Sum_probs=18.1

Q ss_pred             HHHhcCCCCccccccccCCCCcccc
Q 020491          298 KWLYINATCPLCKYNILKSSSNQDR  322 (325)
Q Consensus       298 ~WL~~~~tCPlCR~~I~~~~~~~~~  322 (325)
                      +-+.+...|+.|++++.-+.+.+.+
T Consensus        80 KmLGr~D~CM~C~~pLTLd~~legk  104 (114)
T PF11023_consen   80 KMLGRVDACMHCKEPLTLDPSLEGK  104 (114)
T ss_pred             hhhchhhccCcCCCcCccCchhhcc
Confidence            3455667899999999877665543

; GO: 0005887 integral to plasma membrane

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	325
2kiz_A	69	Solution Structure Of Arkadia Ring-H2 Finger Domain		9e-09
1x4j_A	75	Solution Structure Of Ring Finger In Ring Finger Pr		9e-09
1iym_A	55	Ring-H2 Finger Domain Of El5 Length = 55		2e-08
2ect_A	78	Solution Structure Of The Zinc Finger, C3hc4 Type (		1e-05
2l0b_A	91	Solution Nmr Structure Of Zinc Finger Domain Of E3		3e-05
2ep4_A	74	Solution Structure Of Ring Finger From Human Ring F		1e-04
2ecn_A	70	Solution Structure Of The Ring Domain Of The Human		6e-04
4ayc_B	138	Rnf8 Ring Domain Structure Length = 138		6e-04
4epo_C	149	Crystal Structure Of Rnf8 Bound To The Ubc13MMS2 HE		7e-04
4ayc_A	138	Rnf8 Ring Domain Structure Length = 138		8e-04

>pdb|2KIZ|A Chain A, Solution Structure Of Arkadia Ring-H2 Finger Domain Length = 69

Iteration: 1
 Score = 57.8 bits (138), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 23/46 (50%), Positives = 32/46 (69%)
Query: 268 ECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNI 313
           +C ICLS  ++G ++R LPC H FH  CVD+WL  N  CP+C+ +I
Sbjct: 16  KCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDI 61

>pdb|1X4J|A Chain A, Solution Structure Of Ring Finger In Ring Finger Protein 38 Length = 75

Iteration: 1
 Score = 57.8 bits (138), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 27/62 (43%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 256 TPNEHVLSNEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILK 315
            PN H   +E   C +C+  ++    LR LPC H FH  CVDKWL  N TCP+C+ +   
Sbjct: 15  NPNNH--QSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSGP 72
Query: 316 SS 317
           SS
Sbjct: 73  SS 74

>pdb|1IYM|A Chain A, Ring-H2 Finger Domain Of El5 Length = 55

Iteration: 1
 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 25/52 (48%), Positives = 35/52 (67%), Gaps = 1/52 (1%)
Query: 264 NEDAECCICLSAYDDGVELRELP-CGHHFHCACVDKWLYINATCPLCKYNIL 314
           ++  EC +CL+  +DG E R LP CGH FH  CVD WL  ++TCPLC+  ++
Sbjct: 3   DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54

>pdb|2ECT|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring Finger) Domain Of Ring Finger Protein 126 Length = 78

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
Query: 253 GTETPNEHVLSNEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYN 312
           G+    EHV S    EC +C   Y  G  +R+LPC H FH +C+  WL  + +CP+C+ +
Sbjct: 4   GSSGTEEHVGSG--LECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKS 61
Query: 313 I 313
           +
Sbjct: 62  L 62

>pdb|2L0B|A Chain A, Solution Nmr Structure Of Zinc Finger Domain Of E3 Ubiquitin-Protein Ligase Praja-1 From Homo Sapiens, Northeast Structural Genomics Consortium (Nesg) Target Hr4710b Length = 91

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 29/52 (55%)
Query: 259 EHVLSNEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCK 310
           +H    ++  C IC S Y  G    ELPC H+FH  CV  WL  + TCP+C+
Sbjct: 33  DHGAVGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCR 84

>pdb|2EP4|A Chain A, Solution Structure Of Ring Finger From Human Ring Finger Protein 24 Length = 74

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 19/47 (40%), Positives = 25/47 (53%)
Query: 269 CCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILK 315
           C +CL  +    EL   PC H FH  C+ KWL +   CPLC   +L+
Sbjct: 18  CAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQ 64

>pdb|2ECN|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring Finger Protein 141 Length = 70

Iteration: 1
 Score = 41.6 bits (96), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Query: 265 EDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNI 313
           ++ ECCIC+    D +    LPC H F   C+DKW   +  CP+C+  +
Sbjct: 14  DEEECCICMDGRADLI----LPCAHSFCQKCIDKWSDRHRNCPICRLQM 58

>pdb|4AYC|B Chain B, Rnf8 Ring Domain Structure Length = 138

Iteration: 1
 Score = 41.6 bits (96), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 25/100 (25%), Positives = 47/100 (47%), Gaps = 10/100 (10%)
Query: 214 GASKEDIERLSKFKFRRMVDTEKLSDDGQGSQGGIMTECGTETPNEHVLSNEDAECCICL 273
             SK+D E + + K + +  T++  +  Q  +  +++          VL NE  +C IC 
Sbjct: 8   NRSKKDFEAIIQAKNKELEQTKEEKEKMQAQKEEVLSHMND------VLENE-LQCIICS 60
Query: 274 SAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNI 313
             + + V L    C H F   C+++W+     CP+C+ +I
Sbjct: 61  EYFIEAVTL---NCAHSFCSYCINEWMKRKIECPICRKDI 97

>pdb|4EPO|C Chain C, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2 HETERODIMER Length = 149

Iteration: 1
 Score = 41.6 bits (96), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 25/100 (25%), Positives = 47/100 (47%), Gaps = 10/100 (10%)
Query: 214 GASKEDIERLSKFKFRRMVDTEKLSDDGQGSQGGIMTECGTETPNEHVLSNEDAECCICL 273
             SK+D E + + K + +  T++  +  Q  +  +++          VL NE  +C IC 
Sbjct: 19  NRSKKDFEAIIQAKNKELEQTKEEKEKMQAQKEEVLSHMND------VLENE-LQCIICS 71
Query: 274 SAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNI 313
             + + V L    C H F   C+++W+     CP+C+ +I
Sbjct: 72  EYFIEAVTLN---CAHSFCSYCINEWMKRKIECPICRKDI 108

>pdb|4AYC|A Chain A, Rnf8 Ring Domain Structure Length = 138

Iteration: 1
 Score = 41.2 bits (95), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 25/100 (25%), Positives = 47/100 (47%), Gaps = 10/100 (10%)
Query: 214 GASKEDIERLSKFKFRRMVDTEKLSDDGQGSQGGIMTECGTETPNEHVLSNEDAECCICL 273
             SK+D E + + K + +  T++  +  Q  +  +++          VL NE  +C IC 
Sbjct: 8   NRSKKDFEAIIQAKNKELEQTKEEKEKMQAQKEEVLSHMND------VLENE-LQCIICS 60
Query: 274 SAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNI 313
             + + V L    C H F   C+++W+     CP+C+ +I
Sbjct: 61  EYFIEAVTL---NCAHSFCSYCINEWMKRKIECPICRKDI 97

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	325
1x4j_A	75	Ring finger protein 38; structural genomics, NPPSF	1e-27
2kiz_A	69	E3 ubiquitin-protein ligase arkadia; ring-H2 finge	2e-26
2ep4_A	74	Ring finger protein 24; zinc binding, ubiquitin, E	8e-26
1iym_A	55	EL5; ring-H2 finger, ubiquitin ligase, DNA binding	7e-23
2l0b_A	91	E3 ubiquitin-protein ligase praja-1; zinc finger,	1e-21
2ect_A	78	Ring finger protein 126; metal binding protein, st	3e-20
2ecn_A	70	Ring finger protein 141; RNF141, ring domain, zinc	1e-19
1chc_A	68	Equine herpes virus-1 ring domain; viral protein;	4e-14
2ecm_A	55	Ring finger and CHY zinc finger domain- containing	6e-14
2ea6_A	69	Ring finger protein 4; RNF4, RES4-26, ring domain,	3e-12
3k1l_B	381	Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A	9e-12
3ng2_A	71	RNF4, snurf, ring finger protein 4; ring domain, E	5e-11
2xeu_A	64	Ring finger protein 4; transcription, zinc-finger,	2e-10
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	2e-09
4epo_C	149	E3 ubiquitin-protein ligase RNF8; coiled-coil, E3	3e-09
2ecl_A	81	Ring-box protein 2; RNF7, ring domian, zinc-bindin	5e-09
2djb_A	72	Polycomb group ring finger protein 6; PCGF6, ring	8e-09
2csy_A	81	Zinc finger protein 183-like 1; ring finger protei	3e-08
2ckl_A	108	Polycomb group ring finger protein 4; BMI1, RING1B	7e-08
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	9e-08
2y1n_A	389	E3 ubiquitin-protein ligase; ligase-transferase co	1e-07
2ct0_A	74	Non-SMC element 1 homolog; ring domain, structural	1e-07
1v87_A	114	Deltex protein 2; ring-H2 domain, zinc-binding dom	1e-07
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	5e-07
2y43_A	99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	2e-06
3l11_A	115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	4e-06
4a0k_B	117	E3 ubiquitin-protein ligase RBX1; ligase-DNA-bindi	6e-06
3dpl_R	106	Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST	7e-06
1z6u_A	150	NP95-like ring finger protein isoform B; structura	7e-06
1jm7_B	117	BARD1, BRCA1-associated ring domain protein 1; rin	1e-05
2d8s_A	80	Cellular modulator of immune recognition; C-MIR, m	3e-05
3fl2_A	124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	4e-05
3hct_A	118	TNF receptor-associated factor 6; cross-brace, bet	4e-05
2ckl_B	165	Ubiquitin ligase protein RING2; BMI1, RING1B, poly	6e-05
2vje_B	63	MDM4 protein; proto-oncogene, phosphorylation, alt	9e-05
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	1e-04
3nw0_A	238	Non-structural maintenance of chromosomes element	1e-04
1rmd_A	116	RAG1; V(D)J recombination, antibody, MAD, ring fin	1e-04
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	1e-04
2ct2_A	88	Tripartite motif protein 32; zinc-finger protein H	2e-04
2vje_A	64	E3 ubiquitin-protein ligase MDM2; proto-oncogene,	3e-04
1g25_A	65	CDK-activating kinase assembly factor MAT1; ring f	7e-04
1jm7_A	112	BRCA1, breast cancer type 1 susceptibility protein	8e-04

>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 75

 Score =  102 bits (255), Expect = 1e-27
 Identities = 28/103 (27%), Positives = 40/103 (38%), Gaps = 29/103 (28%)

Query: 215 ASKEDIERLSKFKFRRMVDTEKLSDDGQGSQGGIMTECGTETPNEHVLSNEDAECCICLS 274
            S     +L  ++F                             N +   +E   C +C+ 
Sbjct: 1   GSSGSSGQLPSYRF-----------------------------NPNNHQSEQTLCVVCMC 31

Query: 275 AYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILKSS 317
            ++    LR LPC H FH  CVDKWL  N TCP+C+ +   SS
Sbjct: 32  DFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSGPSS 74

>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens} Length = 69

 Score = 99.0 bits (247), Expect = 2e-26
 Identities = 24/62 (38%), Positives = 37/62 (59%)

Query: 259 EHVLSNEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILKSSS 318
           E    + + +C ICLS  ++G ++R LPC H FH  CVD+WL  N  CP+C+ +I     
Sbjct: 7   EGTEEDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEAQLP 66

Query: 319 NQ 320
           ++
Sbjct: 67  SE 68

>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 74

 Score = 97.1 bits (242), Expect = 8e-26
 Identities = 20/59 (33%), Positives = 27/59 (45%)

Query: 263 SNEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILKSSSNQD 321
            N    C +CL  +    EL   PC H FH  C+ KWL +   CPLC   +L+ +    
Sbjct: 12  LNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQLAQLSG 70

>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1 Length = 55

 Score = 88.8 bits (221), Expect = 7e-23
 Identities = 25/53 (47%), Positives = 35/53 (66%), Gaps = 1/53 (1%)

Query: 263 SNEDAECCICLSAYDDGVELRELP-CGHHFHCACVDKWLYINATCPLCKYNIL 314
            ++  EC +CL+  +DG E R LP CGH FH  CVD WL  ++TCPLC+  ++
Sbjct: 2   MDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54

>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens} Length = 91

 Score = 86.2 bits (214), Expect = 1e-21
 Identities = 28/100 (28%), Positives = 37/100 (37%), Gaps = 28/100 (28%)

Query: 214 GASKEDIERLSKFKFRRMVDTEKLSDDGQGSQGGIMTECGTETPNEHVLSNEDAECCICL 273
            ASKE I+ L +                                 +H    ++  C IC 
Sbjct: 16  PASKESIDALPEILVTE----------------------------DHGAVGQEMCCPICC 47

Query: 274 SAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNI 313
           S Y  G    ELPC H+FH  CV  WL  + TCP+C+   
Sbjct: 48  SEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMF 87

>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 78

 Score = 82.5 bits (204), Expect = 3e-20
 Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 5/70 (7%)

Query: 252 CGTETPNEHVLSNEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKY 311
            GTE   EHV      EC +C   Y  G  +R+LPC H FH +C+  WL  + +CP+C+ 
Sbjct: 6   SGTE---EHV--GSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRK 60

Query: 312 NILKSSSNQD 321
           ++   ++  +
Sbjct: 61  SLTGQNTATN 70

>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70

 Score = 80.5 bits (199), Expect = 1e-19
 Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 4/55 (7%)

Query: 265 EDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILKSSSN 319
           ++ ECCIC+    DG     LPC H F   C+DKW   +  CP+C+  +  ++ +
Sbjct: 14  DEEECCICM----DGRADLILPCAHSFCQKCIDKWSDRHRNCPICRLQMTGANES 64

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1 Length = 68

 Score = 65.5 bits (160), Expect = 4e-14
 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 2/52 (3%)

Query: 262 LSNEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNI 313
           ++     C ICL    +      LPC H F   C+ +W+  N TCPLCK  +
Sbjct: 1   MATVAERCPICLEDPSNYS--MALPCLHAFCYVCITRWIRQNPTCPLCKVPV 50

>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A Length = 55

 Score = 64.6 bits (158), Expect = 6e-14
 Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 1/52 (1%)

Query: 263 SNEDAECCICLSAYDDGVEL-RELPCGHHFHCACVDKWLYINATCPLCKYNI 313
           S+  + C ICL        +   LPCGH  H  C ++ L     CPLC    
Sbjct: 2   SSGSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPS 53

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 69

 Score = 60.3 bits (146), Expect = 3e-12
 Identities = 16/65 (24%), Positives = 25/65 (38%), Gaps = 4/65 (6%)

Query: 253 GTETPNEHVLSNEDAECCICLSAYDDGVELRE----LPCGHHFHCACVDKWLYINATCPL 308
            + +    +  +    C IC+  Y + V+         CGH F   C+   L    TCP 
Sbjct: 2   SSGSSGTGLRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPT 61

Query: 309 CKYNI 313
           C+  I
Sbjct: 62  CRKKI 66

>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster} Length = 381

 Score = 64.5 bits (156), Expect = 9e-12
 Identities = 17/78 (21%), Positives = 26/78 (33%), Gaps = 16/78 (20%)

Query: 252 CGTETPNEHVLSNEDAECCICLSAYDDGVELRE-----LPCGHHFHCACVDKWL------ 300
             ++ P      NE+  C IC +   DG E+         C    H  C+++W       
Sbjct: 294 DWSDGPKLDEEDNEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDG 353

Query: 301 -----YINATCPLCKYNI 313
                     CP CK  +
Sbjct: 354 KTFLEVSFGQCPFCKAKL 371

>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus} Length = 71

 Score = 56.8 bits (137), Expect = 5e-11
 Identities = 16/59 (27%), Positives = 22/59 (37%), Gaps = 4/59 (6%)

Query: 263 SNEDAECCICLSAYDDGVELRE----LPCGHHFHCACVDKWLYINATCPLCKYNILKSS 317
            +    C IC+  Y + V+         CGH F   C+   L    TCP C+  I    
Sbjct: 7   PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKR 65

>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens} Length = 64

 Score = 55.2 bits (133), Expect = 2e-10
 Identities = 16/57 (28%), Positives = 21/57 (36%), Gaps = 4/57 (7%)

Query: 265 EDAECCICLSAYDDGVELRE----LPCGHHFHCACVDKWLYINATCPLCKYNILKSS 317
               C IC+  Y + V+         CGH F   C+   L    TCP C+  I    
Sbjct: 2   AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKR 58

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 71

 Score = 52.1 bits (125), Expect = 2e-09
 Identities = 18/51 (35%), Positives = 21/51 (41%), Gaps = 3/51 (5%)

Query: 263 SNEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNI 313
           S    EC ICL      V L   PC H F   CV    ++   C LC+  I
Sbjct: 12  SLTVPECAICLQTCVHPVSL---PCKHVFCYLCVKGASWLGKRCALCRQEI 59

>4epo_C E3 ubiquitin-protein ligase RNF8; coiled-coil, E3 ubiquitin ligase, protein binding complex; 4.80A {Homo sapiens} Length = 149

 Score = 53.9 bits (129), Expect = 3e-09
 Identities = 20/109 (18%), Positives = 45/109 (41%), Gaps = 3/109 (2%)

Query: 211 QQEGASKEDIERLSKFKFRRMVDTEKLSDDGQGSQGGIMTECGTETPNEHVLSNEDAECC 270
           Q+  A  E++ R  K     +    K  +  +  +  +  +      + + +   + +C 
Sbjct: 9   QEHWALMEELNRSKKDFEAIIQAKNKELEQTKEEKEKMQAQKEEVLSHMNDVLENELQCI 68

Query: 271 ICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILKSSSN 319
           IC   + + V L    C H F   C+++W+     CP+C+ +I   + +
Sbjct: 69  ICSEYFIEAVTL---NCAHSFCSYCINEWMKRKIECPICRKDIKSKTYS 114

>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81

 Score = 51.4 bits (123), Expect = 5e-09
 Identities = 13/48 (27%), Positives = 17/48 (35%), Gaps = 1/48 (2%)

Query: 263 SNEDAECCICLSAYDDGVELRELP-CGHHFHCACVDKWLYINATCPLC 309
                 C  C +       +     C H FH  C+  W+  N  CPLC
Sbjct: 23  VQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLC 70

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 72

 Score = 50.5 bits (121), Expect = 8e-09
 Identities = 12/53 (22%), Positives = 20/53 (37%), Gaps = 2/53 (3%)

Query: 264 NEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILKS 316
                C IC     D   +    C H F  +C+ +  Y +  CP C   + ++
Sbjct: 13  TPYILCSICKGYLIDATTI--TECLHTFCKSCIVRHFYYSNRCPKCNIVVHQT 63

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81

 Score = 49.5 bits (118), Expect = 3e-08
 Identities = 11/47 (23%), Positives = 17/47 (36%), Gaps = 3/47 (6%)

Query: 264 NEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCK 310
                C IC  A+ + V      C H+F  +C  +       C +C 
Sbjct: 13  EIPFRCFICRQAFQNPVVT---KCRHYFCESCALEHFRATPRCYICD 56

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A Length = 108

 Score = 49.0 bits (117), Expect = 7e-08
 Identities = 13/57 (22%), Positives = 24/57 (42%), Gaps = 2/57 (3%)

Query: 264 NEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILKSSSNQ 320
           N    C +C   + D   +  + C H F   C+ ++L  +  CP+C   + K+    
Sbjct: 13  NPHLMCVLCGGYFIDATTI--IECLHSFCKTCIVRYLETSKYCPICDVQVHKTRPLL 67

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens} Length = 100

 Score = 48.7 bits (116), Expect = 9e-08
 Identities = 13/55 (23%), Positives = 19/55 (34%), Gaps = 3/55 (5%)

Query: 264 NEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYI-NATCPLCKYNILKSS 317
            E   C IC+    D        C      +C+ +WL    A CP C+  +    
Sbjct: 20  AEVFRCFICMEKLRDARLC--PHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRE 72

>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A* Length = 389

 Score = 51.7 bits (123), Expect = 1e-07
 Identities = 19/91 (20%), Positives = 28/91 (30%), Gaps = 15/91 (16%)

Query: 240 DGQGSQGGIMTECGTETPNEHVLSNEDAE-----------CCICLSAYDDGVELRELPCG 288
           DG+     +   C     +   ++ E  E           C IC     D       PCG
Sbjct: 295 DGRNQNPDLTGLCEPTPQDHIKVTQEQYELYCEMGSTFQLCKICAENDKDVKIE---PCG 351

Query: 289 HHFHCACVDKWLYI-NATCPLCKYNILKSSS 318
           H    +C+  W       CP C+  I  +  
Sbjct: 352 HLMCTSCLTSWQESEGQGCPFCRCEIKGTEP 382

>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 74

 Score = 47.2 bits (112), Expect = 1e-07
 Identities = 14/45 (31%), Positives = 15/45 (33%), Gaps = 4/45 (8%)

Query: 268 ECCICLSAYDDGVELRELPCGHHFHCACVDKWLYI--NATCPLCK 310
            C IC S    G       CG   H  CV K+        CP C 
Sbjct: 17  ICNICHSLLIQGQSCE--TCGIRMHLPCVAKYFQSNAEPRCPHCN 59

>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1 Length = 114

 Score = 48.3 bits (114), Expect = 1e-07
 Identities = 17/82 (20%), Positives = 25/82 (30%), Gaps = 20/82 (24%)

Query: 259 EHVLSNEDAECCICL---------------SAYDDGVELRELPCGHHFHCACVDKWL--- 300
           E +    + +C IC+                A    V  R   C H FH  C+       
Sbjct: 18  EELKVAPEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNG 77

Query: 301 --YINATCPLCKYNILKSSSNQ 320
               +  CP CK    + +  Q
Sbjct: 78  NKDGSLQCPSCKTIYGEKTGTQ 99

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus} Length = 133

 Score = 47.1 bits (111), Expect = 5e-07
 Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 4/56 (7%)

Query: 262 LSNEDAECCICLSAYDDGVELRE----LPCGHHFHCACVDKWLYINATCPLCKYNI 313
           + +    C IC+  Y + V+         CGH F   C+   L    TCP C+  I
Sbjct: 3   MGSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 58

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens} Length = 99

 Score = 45.1 bits (107), Expect = 2e-06
 Identities = 11/47 (23%), Positives = 22/47 (46%), Gaps = 2/47 (4%)

Query: 264 NEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCK 310
           ++   C IC   ++  + + +  C H++   C+ K+L     CP C 
Sbjct: 20  DDLLRCGICFEYFNIAMIIPQ--CSHNYCSLCIRKFLSYKTQCPTCC 64

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, chromosomal protein, DNA repair, metal-binding; 2.12A {Homo sapiens} Length = 115

 Score = 44.5 bits (105), Expect = 4e-06
 Identities = 15/70 (21%), Positives = 26/70 (37%), Gaps = 4/70 (5%)

Query: 256 TPNEHVLSNEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWL-YINATCPLCKYNIL 314
            P + + S  + +C IC+    + V L   PC H     C    +   +  CP C+  + 
Sbjct: 5   LPKDAIPSLSECQCGICMEILVEPVTL---PCNHTLCKPCFQSTVEKASLCCPFCRRRVS 61

Query: 315 KSSSNQDREE 324
             +    R  
Sbjct: 62  SWTRYHTRRN 71

>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus} Length = 117

 Score = 44.1 bits (103), Expect = 6e-06
 Identities = 15/60 (25%), Positives = 19/60 (31%), Gaps = 15/60 (25%)

Query: 265 EDAECCICL---------------SAYDDGVELRELPCGHHFHCACVDKWLYINATCPLC 309
               C IC                SA  +   +    C H FH  C+ +WL     CPL 
Sbjct: 47  VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLD 106

>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A Length = 106

 Score = 43.7 bits (102), Expect = 7e-06
 Identities = 11/42 (26%), Positives = 15/42 (35%), Gaps = 1/42 (2%)

Query: 269 CCICLSAYDDGVELRELP-CGHHFHCACVDKWLYINATCPLC 309
           C    ++            C H FH  C+ +WL     CPL 
Sbjct: 54  CQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLD 95

>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens} Length = 150

 Score = 44.2 bits (104), Expect = 7e-06
 Identities = 9/55 (16%), Positives = 20/55 (36%), Gaps = 4/55 (7%)

Query: 265 EDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINA-TCPLCKYNILKSSS 318
           +   C  C       V      C H+    C+ +       +CP C++++ ++  
Sbjct: 77  QSFMCVCCQELVYQPVTT---ECFHNVCKDCLQRSFKAQVFSCPACRHDLGQNYI 128

>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 117

 Score = 42.6 bits (100), Expect = 1e-05
 Identities = 13/46 (28%), Positives = 17/46 (36%), Gaps = 4/46 (8%)

Query: 265 EDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCK 310
           +   C  C +   + V L    C H F   CV     I   CP+C 
Sbjct: 21  KLLRCSRCTNILREPVCL--GGCEHIFCSNCVSDC--IGTGCPVCY 62

>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 80

 Score = 41.1 bits (96), Expect = 3e-05
 Identities = 18/66 (27%), Positives = 25/66 (37%), Gaps = 8/66 (12%)

Query: 253 GTETPNEHVLSNEDAECCICLSAYDDGVELRELPCG-----HHFHCACVDKWLYI--NAT 305
            + +    +  +    C IC    DD   L   PC      H  H AC+ +W+       
Sbjct: 2   SSGSSGTSITPSSQDICRICHCEGDDESPL-ITPCHCTGSLHFVHQACLQQWIKSSDTRC 60

Query: 306 CPLCKY 311
           C LCKY
Sbjct: 61  CELCKY 66

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens} Length = 124

 Score = 41.5 bits (97), Expect = 4e-05
 Identities = 10/47 (21%), Positives = 17/47 (36%), Gaps = 4/47 (8%)

Query: 265 EDAECCICLSAYDDGVELRELPCGHHFHCACVDKWL-YINATCPLCK 310
           E  +C  C       +      C H+    C+D+       +CP C+
Sbjct: 51  ETFQCICCQELVFRPITT---VCQHNVCKDCLDRSFRAQVFSCPACR 94

>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A Length = 118

 Score = 41.3 bits (97), Expect = 4e-05
 Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 4/60 (6%)

Query: 264 NEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLY-INATCPLCKYNILKSSSNQDR 322
               EC ICL A  + V+    PCGH F  AC+ K +      CP+    +L++    D 
Sbjct: 16  ESKYECPICLMALREAVQT---PCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDN 72

>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B Length = 165

 Score = 41.9 bits (98), Expect = 6e-05
 Identities = 15/56 (26%), Positives = 24/56 (42%), Gaps = 3/56 (5%)

Query: 264 NEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWL-YINATCPLCKYNILKSSS 318
           + +  C ICL    + +  +E  C H F   C+   L   N  CP C+  ++   S
Sbjct: 52  HSELMCPICLDMLKNTMTTKE--CLHRFCADCIITALRSGNKECPTCRKKLVSKRS 105

>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B* Length = 63

 Score = 39.0 bits (91), Expect = 9e-05
 Identities = 15/52 (28%), Positives = 20/52 (38%), Gaps = 2/52 (3%)

Query: 263 SNEDAECCICLSAYDDGVELRELPCGHHFHC-ACVDKWLYINATCPLCKYNI 313
            N    C +C     DG  +     GH   C  C  +     A+CP+CK  I
Sbjct: 4   QNLLKPCSLCEKRPRDGNIIH-GRTGHLVTCFHCARRLKKAGASCPICKKEI 54

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66

 Score = 39.0 bits (91), Expect = 1e-04
 Identities = 12/52 (23%), Positives = 21/52 (40%), Gaps = 4/52 (7%)

Query: 265 EDAECCICLSAYDDGVELRELPCGHHFHCACVDKWL-YINATCPLCKYNILK 315
           +  +C  C        +     CGH F  +C+   L   +  C  C+ +I+K
Sbjct: 14  DKYKCEKCHLVLCSPKQT---ECGHRFCESCMAALLSSSSPKCTACQESIVK 62

>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens} Length = 238

 Score = 42.0 bits (98), Expect = 1e-04
 Identities = 14/55 (25%), Positives = 16/55 (29%), Gaps = 4/55 (7%)

Query: 258 NEHVLSNEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYI--NATCPLCK 310
                 +    C IC S    G       CG   H  CV K+        CP C 
Sbjct: 172 IRETYPDAVKICNICHSLLIQGQSCET--CGIRMHLPCVAKYFQSNAEPRCPHCN 224

>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1 Length = 116

 Score = 39.9 bits (93), Expect = 1e-04
 Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 4/53 (7%)

Query: 265 EDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYI-NATCPLCKYNILKS 316
           +   C IC     D VE     C H F   C+ + L +  + CP C+Y    +
Sbjct: 22  KSISCQICEHILADPVET---SCKHLFCRICILRCLKVMGSYCPSCRYPCFPT 71

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens} Length = 170

 Score = 40.8 bits (95), Expect = 1e-04
 Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 4/59 (6%)

Query: 265 EDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINA-TCPLCKYNILKSSSNQDR 322
              EC ICL A  + V+    PCGH F  AC+ K +      CP+    +L++    D 
Sbjct: 17  SKYECPICLMALREAVQT---PCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDN 72

>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88

 Score = 38.5 bits (90), Expect = 2e-04
 Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 4/50 (8%)

Query: 265 EDAECCICLSAYDDGVEL-RELPCGHHFHCACVDKWLYINA---TCPLCK 310
           E  EC IC+ ++ +     + L CGH     C++K L  +     CP C 
Sbjct: 14  EVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCS 63

>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A Length = 64

 Score = 37.5 bits (87), Expect = 3e-04
 Identities = 15/51 (29%), Positives = 19/51 (37%), Gaps = 2/51 (3%)

Query: 264 NEDAECCICLSAYDDGVELRELPCGHHFHC-ACVDKWLYINATCPLCKYNI 313
           N    C IC     +G  +     GH   C  C  K    N  CP+C+  I
Sbjct: 6   NAIEPCVICQGRPKNGC-IVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPI 55

>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 65

 Score = 36.5 bits (84), Expect = 7e-04
 Identities = 15/56 (26%), Positives = 22/56 (39%), Gaps = 3/56 (5%)

Query: 265 EDAECCICLSAYDDGVELREL--PCGHHFHCACVDKWLYIN-ATCPLCKYNILKSS 317
           +D  C  C +       L+ +   CGH    +CVD         CP C   + KS+
Sbjct: 2   DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSN 57

>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 112

 Score = 37.8 bits (88), Expect = 8e-04
 Identities = 17/49 (34%), Positives = 21/49 (42%), Gaps = 6/49 (12%)

Query: 265 EDAECCICLSAYDDGVELRELPCGHHFHCACVDKWL---YINATCPLCK 310
           +  EC ICL    + V      C H F   C+ K L      + CPLCK
Sbjct: 20  KILECPICLELIKEPVST---KCDHIFCKFCMLKLLNQKKGPSQCPLCK 65

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	325
2l0b_A	91	E3 ubiquitin-protein ligase praja-1; zinc finger,	99.71
1x4j_A	75	Ring finger protein 38; structural genomics, NPPSF	99.69
1iym_A	55	EL5; ring-H2 finger, ubiquitin ligase, DNA binding	99.6
2kiz_A	69	E3 ubiquitin-protein ligase arkadia; ring-H2 finge	99.6
2ep4_A	74	Ring finger protein 24; zinc binding, ubiquitin, E	99.59
2ect_A	78	Ring finger protein 126; metal binding protein, st	99.58
2ecl_A	81	Ring-box protein 2; RNF7, ring domian, zinc-bindin	99.53
2ecm_A	55	Ring finger and CHY zinc finger domain- containing	99.5
1v87_A	114	Deltex protein 2; ring-H2 domain, zinc-binding dom	99.5
2d8s_A	80	Cellular modulator of immune recognition; C-MIR, m	99.47
2ea6_A	69	Ring finger protein 4; RNF4, RES4-26, ring domain,	99.47
3dpl_R	106	Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST	99.45
3ng2_A	71	RNF4, snurf, ring finger protein 4; ring domain, E	99.45
2xeu_A	64	Ring finger protein 4; transcription, zinc-finger,	99.44
1chc_A	68	Equine herpes virus-1 ring domain; viral protein;	99.4
2ecn_A	70	Ring finger protein 141; RNF141, ring domain, zinc	99.39
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	99.39
2djb_A	72	Polycomb group ring finger protein 6; PCGF6, ring	99.38
2yur_A	74	Retinoblastoma-binding protein 6; P53-associated c	99.35
2ct2_A	88	Tripartite motif protein 32; zinc-finger protein H	99.34
4a0k_B	117	E3 ubiquitin-protein ligase RBX1; ligase-DNA-bindi	99.33
2ysl_A	73	Tripartite motif-containing protein 31; ring-type	99.33
2csy_A	81	Zinc finger protein 183-like 1; ring finger protei	99.31
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	99.3
4ayc_A	138	E3 ubiquitin-protein ligase RNF8; DNA damage, K63	99.24
2ysj_A	63	Tripartite motif-containing protein 31; ring-type	99.24
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	99.24
2ecw_A	85	Tripartite motif-containing protein 30; metal bind	99.21
2ct0_A	74	Non-SMC element 1 homolog; ring domain, structural	99.21
2ecv_A	85	Tripartite motif-containing protein 5; metal bindi	99.2
2ecj_A	58	Tripartite motif-containing protein 39; TRIM39, ri	99.18
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	99.17
1t1h_A	78	Gspef-atpub14, armadillo repeat containing protein	99.17
1g25_A	65	CDK-activating kinase assembly factor MAT1; ring f	99.17
2egp_A	79	Tripartite motif-containing protein 34; ZF-C3HC4 d	99.17
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	99.16
2y43_A	99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	99.15
2ckl_A	108	Polycomb group ring finger protein 4; BMI1, RING1B	99.12
3ztg_A	92	E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR	99.11
3fl2_A	124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	99.09
1jm7_A	112	BRCA1, breast cancer type 1 susceptibility protein	99.05
2ckl_B	165	Ubiquitin ligase protein RING2; BMI1, RING1B, poly	99.02
3l11_A	115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	99.01
3hct_A	118	TNF receptor-associated factor 6; cross-brace, bet	99.01
1rmd_A	116	RAG1; V(D)J recombination, antibody, MAD, ring fin	98.98
1z6u_A	150	NP95-like ring finger protein isoform B; structura	98.97
2vje_A	64	E3 ubiquitin-protein ligase MDM2; proto-oncogene,	98.93
1e4u_A	78	Transcriptional repressor NOT4; gene regulation, t	98.91
1bor_A	56	Transcription factor PML; proto-oncogene, nuclear	98.9
1vyx_A	60	ORF K3, K3RING; zinc-binding protein, ring domain,	98.89
2y1n_A	389	E3 ubiquitin-protein ligase; ligase-transferase co	98.86
1wgm_A	98	Ubiquitin conjugation factor E4A; ubiquitinating e	98.84
2kr4_A	85	Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ri	98.83
2kre_A	100	Ubiquitin conjugation factor E4 B; U-box domain, E	98.83
3knv_A	141	TNF receptor-associated factor 2; cross-brace, alt	98.82
2vje_B	63	MDM4 protein; proto-oncogene, phosphorylation, alt	98.81
3k1l_B	381	Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A	98.79
1jm7_B	117	BARD1, BRCA1-associated ring domain protein 1; rin	98.79
4ic3_A	74	E3 ubiquitin-protein ligase XIAP; ring domain, zin	98.77
2ea5_A	68	Cell growth regulator with ring finger domain prot	98.68
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	98.66
2yu4_A	94	E3 SUMO-protein ligase NSE2; SP-ring domain, struc	98.57
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.56
2ecg_A	75	Baculoviral IAP repeat-containing protein 4; BIRC4	98.56
1wim_A	94	KIAA0161 protein; ring finger domain, UBCM4-intera	98.49
2yho_A	79	E3 ubiquitin-protein ligase mylip; ligase, E2 liga	98.4
2f42_A	179	STIP1 homology and U-box containing protein 1; cha	98.38
2bay_A	61	PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin l	98.24
3t6p_A	345	Baculoviral IAP repeat-containing protein 2; ring,	98.24
3htk_C	267	E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-	98.01
3vk6_A	101	E3 ubiquitin-protein ligase hakai; HYB, phosphotyr	97.71
3nw0_A	238	Non-structural maintenance of chromosomes element	97.67
2lri_C	66	Autoimmune regulator; Zn binding protein domain, a	94.99
2ko5_A	99	Ring finger protein Z; lassa fever virus-Z, negati	94.21
2jun_A	101	Midline-1; B-BOX, TRIM, ring finger, alternative s	93.95
2xb1_A	105	Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro;	92.72
1we9_A	64	PHD finger family protein; structural genomics, PH	92.13
2l43_A	88	N-teminal domain from histone H3.3, linker, PHD1 f	91.38
2l5u_A	61	Chromodomain-helicase-DNA-binding protein 4; CHD4,	88.57
3lqh_A	183	Histone-lysine N-methyltransferase MLL; PHD finger	88.29
1f62_A	51	Transcription factor WSTF; Zn-finger; NMR {Homo sa	87.56
1xwh_A	66	Autoimmune regulator; PHD domain, Zn binding domai	86.37
2vpb_A	65	Hpygo1, pygopus homolog 1; gene regulation, WNT si	86.22
2k16_A	75	Transcription initiation factor TFIID subunit 3; p	85.78
3o36_A	184	Transcription intermediary factor 1-alpha; TRIM24,	85.33
1wem_A	76	Death associated transcription factor 1; structura	84.98
2kgg_A	52	Histone demethylase jarid1A; PHD finger, histone m	84.57
1wil_A	89	KIAA1045 protein; ring finger domain, structural g	84.45
1fp0_A	88	KAP-1 corepressor; PHD domain, C3HC4 type zinc bin	84.14
1mm2_A	61	MI2-beta; PHD, zinc finger, protein scaffold, DNA	83.84
2yql_A	56	PHD finger protein 21A; PHD domain, structural gen	82.58
2ysm_A	111	Myeloid/lymphoid or mixed-lineage leukemia protein	81.63
2puy_A	60	PHD finger protein 21A; PHD finger, histone CODE,	81.42
1wep_A	79	PHF8; structural genomics, PHD domain, riken struc	81.25
1wee_A	72	PHD finger family protein; structural genomics, PH	81.02
2e6r_A	92	Jumonji/ARID domain-containing protein 1D; PHD dom	80.82

>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}

Probab=99.71  E-value=7.1e-18  Score=130.95  Aligned_cols=76  Identities=36%  Similarity=0.655  Sum_probs=65.4

Q ss_pred             cCCCCHHHHhhcccceeeeccccccccCCCCCCCCCcccccCCCCCCcccCCCCCcccccccccccCCCceEEeCcCCcc
Q 020491          212 QEGASKEDIERLSKFKFRRMVDTEKLSDDGQGSQGGIMTECGTETPNEHVLSNEDAECCICLSAYDDGVELRELPCGHHF  291 (325)
Q Consensus       212 ~~~~s~~~i~~Lp~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ed~~C~ICL~~y~~~~~lr~LPC~H~F  291 (325)
                      ..+++++.++.||..++......                            ..++..|+||+++|.+++.++.|||+|.|
T Consensus        14 ~~~~s~~~i~~lp~~~~~~~~~~----------------------------~~~~~~C~IC~~~~~~~~~~~~l~C~H~F   65 (91)
T 2l0b_A           14 NPPASKESIDALPEILVTEDHGA----------------------------VGQEMCCPICCSEYVKGDVATELPCHHYF   65 (91)
T ss_dssp             CCCCCHHHHHTSCEEECCTTCSS----------------------------SSSCSEETTTTEECCTTCEEEEETTTEEE
T ss_pred             CCCCCHHHHHhCCCeeecccccc----------------------------cCCCCCCcccChhhcCCCcEEecCCCChH
Confidence            48999999999999887643211                            12447899999999999999999999999


Q ss_pred             chHHHHHHHhcCCCCccccccccC
Q 020491          292 HCACVDKWLYINATCPLCKYNILK  315 (325)
Q Consensus       292 H~~CI~~WL~~~~tCPlCR~~I~~  315 (325)
                      |..||++|++.+.+||+||..+..
T Consensus        66 h~~Ci~~wl~~~~~CP~Cr~~~~~   89 (91)
T 2l0b_A           66 HKPCVSIWLQKSGTCPVCRCMFPP   89 (91)
T ss_dssp             EHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred             HHHHHHHHHHcCCcCcCcCccCCC
Confidence            999999999999999999998864

>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.69  E-value=6e-18  Score=126.38  Aligned_cols=53  Identities=45%  Similarity=1.014  Sum_probs=49.0

Q ss_pred             CCcccccccccccCCCceEEeCcCCccchHHHHHHHhcCCCCccccccccCCC
Q 020491          265 EDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILKSS  317 (325)
Q Consensus       265 ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~I~~~~  317 (325)
                      ++.+|+||+++|.+++.++.+||+|.||.+||++|++.+.+||+||+++....
T Consensus        22 ~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~~   74 (75)
T 1x4j_A           22 EQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSGPSS   74 (75)
T ss_dssp             SCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCCCCC
T ss_pred             CCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCCCCC
Confidence            45789999999999999999999999999999999999999999999987653

>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1

Probab=99.60  E-value=4e-16  Score=109.13  Aligned_cols=50  Identities=50%  Similarity=1.194  Sum_probs=46.6

Q ss_pred             CCcccccccccccCCCceEEeC-cCCccchHHHHHHHhcCCCCcccccccc
Q 020491          265 EDAECCICLSAYDDGVELRELP-CGHHFHCACVDKWLYINATCPLCKYNIL  314 (325)
Q Consensus       265 ed~~C~ICL~~y~~~~~lr~LP-C~H~FH~~CI~~WL~~~~tCPlCR~~I~  314 (325)
                      ++.+|+||+++|++++.+..+| |+|.||.+||++|++.+.+||+||+.+.
T Consensus         4 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~   54 (55)
T 1iym_A            4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV   54 (55)
T ss_dssp             CSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred             CCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence            4578999999999999999998 9999999999999999999999999874

>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}

Probab=99.60  E-value=1.2e-15  Score=111.85  Aligned_cols=55  Identities=42%  Similarity=1.029  Sum_probs=50.0

Q ss_pred             CCCcccccccccccCCCceEEeCcCCccchHHHHHHHhcCCCCccccccccCCCC
Q 020491          264 NEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILKSSS  318 (325)
Q Consensus       264 ~ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~I~~~~~  318 (325)
                      .++..|+||++.|.+++.++.+||+|.||..||.+|++.+.+||+||..+....+
T Consensus        12 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~   66 (69)
T 2kiz_A           12 DTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEAQLP   66 (69)
T ss_dssp             TCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSCSCCC
T ss_pred             CCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCccccCcCC
Confidence            4567899999999999999999999999999999999999999999999976544

>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.59  E-value=1.2e-15  Score=113.38  Aligned_cols=56  Identities=36%  Similarity=0.812  Sum_probs=50.7

Q ss_pred             CCCcccccccccccCCCceEEeCcCCccchHHHHHHHhcCCCCccccccccCCCCc
Q 020491          264 NEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILKSSSN  319 (325)
Q Consensus       264 ~ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~I~~~~~~  319 (325)
                      .++.+|+||+++|.+++.++.|||+|.||.+||++|++.+.+||+||..+......
T Consensus        13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~~~~~   68 (74)
T 2ep4_A           13 NLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQLAQL   68 (74)
T ss_dssp             CCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCSSCCSC
T ss_pred             CCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCccccccccc
Confidence            45679999999999999999999999999999999999999999999999765544

>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.58  E-value=1.5e-15  Score=113.91  Aligned_cols=56  Identities=32%  Similarity=0.849  Sum_probs=50.8

Q ss_pred             CCCcccccccccccCCCceEEeCcCCccchHHHHHHHhcCCCCccccccccCCCCc
Q 020491          264 NEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILKSSSN  319 (325)
Q Consensus       264 ~ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~I~~~~~~  319 (325)
                      .++.+|+||++.|.+++.++.+||+|.||..||.+|++.+.+||+||..+......
T Consensus        13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~   68 (78)
T 2ect_A           13 GSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTGQNTA   68 (78)
T ss_dssp             SSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCCCSCSC
T ss_pred             CCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccCCcccC
Confidence            45679999999999999999999999999999999999999999999999765544

>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.53  E-value=4.8e-15  Score=112.46  Aligned_cols=51  Identities=31%  Similarity=0.684  Sum_probs=42.4

Q ss_pred             CCcccccccccccC-----------CCceEEeC-cCCccchHHHHHHHhcCCCCccccccccC
Q 020491          265 EDAECCICLSAYDD-----------GVELRELP-CGHHFHCACVDKWLYINATCPLCKYNILK  315 (325)
Q Consensus       265 ed~~C~ICL~~y~~-----------~~~lr~LP-C~H~FH~~CI~~WL~~~~tCPlCR~~I~~  315 (325)
                      ++++|+||+++|++           ++.++.+| |+|.||.+||++||+.+.+||+||+++..
T Consensus        14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~   76 (81)
T 2ecl_A           14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVV   76 (81)
T ss_dssp             CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCE
T ss_pred             CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcch
Confidence            45668888877754           45577776 99999999999999999999999998754

>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A

Probab=99.50  E-value=1.1e-14  Score=101.61  Aligned_cols=50  Identities=34%  Similarity=0.690  Sum_probs=44.2

Q ss_pred             CCcccccccccccCC-CceEEeCcCCccchHHHHHHHhcCCCCcccccccc
Q 020491          265 EDAECCICLSAYDDG-VELRELPCGHHFHCACVDKWLYINATCPLCKYNIL  314 (325)
Q Consensus       265 ed~~C~ICL~~y~~~-~~lr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~I~  314 (325)
                      ++.+|+||+++|.++ +..+.+||+|.||.+||++|++.+.+||+||..+.
T Consensus         4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~   54 (55)
T 2ecm_A            4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS   54 (55)
T ss_dssp             CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred             CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence            457899999999765 45788899999999999999999999999999874

>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1

Probab=99.50  E-value=1.6e-14  Score=116.04  Aligned_cols=56  Identities=25%  Similarity=0.473  Sum_probs=45.9

Q ss_pred             CCcccccccccccCCC---------------ceEEeCcCCccchHHHHHHH-----hcCCCCccccccccCCCCcc
Q 020491          265 EDAECCICLSAYDDGV---------------ELRELPCGHHFHCACVDKWL-----YINATCPLCKYNILKSSSNQ  320 (325)
Q Consensus       265 ed~~C~ICL~~y~~~~---------------~lr~LPC~H~FH~~CI~~WL-----~~~~tCPlCR~~I~~~~~~~  320 (325)
                      .+.+|+|||++|.+++               .++.+||+|.||..||++|+     +.+.+||+||..+.....++
T Consensus        24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~~g~q   99 (114)
T 1v87_A           24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEKTGTQ   99 (114)
T ss_dssp             CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSCSSSC
T ss_pred             CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCCCCCC
Confidence            4468999999997753               44578999999999999999     45779999999987665543

>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.47  E-value=3.1e-14  Score=107.84  Aligned_cols=55  Identities=33%  Similarity=0.757  Sum_probs=46.4

Q ss_pred             CCCCCcccccccccccCCCceEEeCcC-----CccchHHHHHHHhcC--CCCccccccccCCC
Q 020491          262 LSNEDAECCICLSAYDDGVELRELPCG-----HHFHCACVDKWLYIN--ATCPLCKYNILKSS  317 (325)
Q Consensus       262 ~~~ed~~C~ICL~~y~~~~~lr~LPC~-----H~FH~~CI~~WL~~~--~tCPlCR~~I~~~~  317 (325)
                      .+.++..|.||+++|++++.+ .+||+     |.||.+||++|++.+  .+||+||+.+....
T Consensus        11 ~~~~~~~C~IC~~~~~~~~~l-~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~   72 (80)
T 2d8s_A           11 TPSSQDICRICHCEGDDESPL-ITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMET   72 (80)
T ss_dssp             CCTTSCCCSSSCCCCCSSSCE-ECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCC
T ss_pred             CCCCCCCCeEcCccccCCCee-EeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCc
Confidence            344567899999999988776 59997     999999999999876  48999999986543

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.47  E-value=3.3e-14  Score=103.59  Aligned_cols=52  Identities=29%  Similarity=0.643  Sum_probs=45.7

Q ss_pred             CCCcccccccccccCC----CceEEeCcCCccchHHHHHHHhcCCCCccccccccC
Q 020491          264 NEDAECCICLSAYDDG----VELRELPCGHHFHCACVDKWLYINATCPLCKYNILK  315 (325)
Q Consensus       264 ~ed~~C~ICL~~y~~~----~~lr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~I~~  315 (325)
                      .++..|+||++.|.+.    ..+..++|+|.||.+||++|++.+.+||+||..+.+
T Consensus        13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~   68 (69)
T 2ea6_A           13 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH   68 (69)
T ss_dssp             TCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred             CCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence            4568899999999874    445789999999999999999999999999998864

>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A

Probab=99.45  E-value=3.7e-14  Score=113.13  Aligned_cols=50  Identities=28%  Similarity=0.571  Sum_probs=43.7

Q ss_pred             CCcccccccccccCC---------------CceEEeCcCCccchHHHHHHHhcCCCCcccccccc
Q 020491          265 EDAECCICLSAYDDG---------------VELRELPCGHHFHCACVDKWLYINATCPLCKYNIL  314 (325)
Q Consensus       265 ed~~C~ICL~~y~~~---------------~~lr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~I~  314 (325)
                      +++.|+||++.|++.               ..++.+||+|.||..||++||+.+.+||+||.+..
T Consensus        36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~  100 (106)
T 3dpl_R           36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE  100 (106)
T ss_dssp             CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred             CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCcce
Confidence            457899999999865               13778899999999999999999999999999853

>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}

Probab=99.45  E-value=2.6e-14  Score=104.87  Aligned_cols=54  Identities=28%  Similarity=0.618  Sum_probs=47.2

Q ss_pred             CCCcccccccccccCC----CceEEeCcCCccchHHHHHHHhcCCCCccccccccCCC
Q 020491          264 NEDAECCICLSAYDDG----VELRELPCGHHFHCACVDKWLYINATCPLCKYNILKSS  317 (325)
Q Consensus       264 ~ed~~C~ICL~~y~~~----~~lr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~I~~~~  317 (325)
                      .++.+|+||++.|.+.    +....+||+|.||.+||++|++.+.+||+||..+..+.
T Consensus         8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~   65 (71)
T 3ng2_A            8 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKR   65 (71)
T ss_dssp             TTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCCCS
T ss_pred             CCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccChhh
Confidence            4567899999999864    56688999999999999999999999999999987543

>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}

Probab=99.44  E-value=4.1e-14  Score=101.54  Aligned_cols=52  Identities=29%  Similarity=0.623  Sum_probs=45.8

Q ss_pred             CCcccccccccccCC----CceEEeCcCCccchHHHHHHHhcCCCCccccccccCC
Q 020491          265 EDAECCICLSAYDDG----VELRELPCGHHFHCACVDKWLYINATCPLCKYNILKS  316 (325)
Q Consensus       265 ed~~C~ICL~~y~~~----~~lr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~I~~~  316 (325)
                      ++.+|+||++.|.++    +.+..++|+|.||.+|+++|++.+.+||+||.++...
T Consensus         2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~   57 (64)
T 2xeu_A            2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHK   57 (64)
T ss_dssp             CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTTT
T ss_pred             CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCCcc
Confidence            457899999999864    4567899999999999999999999999999998764

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1

Probab=99.40  E-value=1.1e-13  Score=100.87  Aligned_cols=50  Identities=36%  Similarity=0.806  Sum_probs=43.9

Q ss_pred             CCCcccccccccccCCCceEEeCcCCccchHHHHHHHhcCCCCccccccccC
Q 020491          264 NEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILK  315 (325)
Q Consensus       264 ~ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~I~~  315 (325)
                      +++..|+||++.+.++  ...+||+|.||..|+.+|++.+.+||+||..+..
T Consensus         3 ~~~~~C~IC~~~~~~~--~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~   52 (68)
T 1chc_A            3 TVAERCPICLEDPSNY--SMALPCLHAFCYVCITRWIRQNPTCPLCKVPVES   52 (68)
T ss_dssp             CCCCCCSSCCSCCCSC--EEETTTTEEESTTHHHHHHHHSCSTTTTCCCCCC
T ss_pred             CCCCCCeeCCccccCC--cEecCCCCeeHHHHHHHHHhCcCcCcCCChhhHh
Confidence            3457899999998754  4789999999999999999999999999999864

>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.39  E-value=1.2e-13  Score=101.25  Aligned_cols=51  Identities=35%  Similarity=0.989  Sum_probs=45.3

Q ss_pred             CCCcccccccccccCCCceEEeCcCCccchHHHHHHHhcCCCCccccccccCCCC
Q 020491          264 NEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILKSSS  318 (325)
Q Consensus       264 ~ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~I~~~~~  318 (325)
                      .++..|+||++.+.+    ..+||+|.||..||++|++.+.+||+||..+.....
T Consensus        13 ~~~~~C~IC~~~~~~----~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~   63 (70)
T 2ecn_A           13 TDEEECCICMDGRAD----LILPCAHSFCQKCIDKWSDRHRNCPICRLQMTGANE   63 (70)
T ss_dssp             CCCCCCSSSCCSCCS----EEETTTEEECHHHHHHSSCCCSSCHHHHHCTTCCCC
T ss_pred             CCCCCCeeCCcCccC----cccCCCCcccHHHHHHHHHCcCcCCCcCCcccCCCc
Confidence            456789999999877    789999999999999999999999999999976543

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.39  E-value=1.7e-13  Score=100.92  Aligned_cols=49  Identities=33%  Similarity=0.689  Sum_probs=43.9

Q ss_pred             CCCcccccccccccCCCceEEeCcCCccchHHHHHHHhcCCCCccccccccC
Q 020491          264 NEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILK  315 (325)
Q Consensus       264 ~ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~I~~  315 (325)
                      .++..|+||++.+.+.   ..+||+|.||.+||++|++.+.+||+||..+..
T Consensus        13 ~~~~~C~IC~~~~~~~---~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~   61 (71)
T 2d8t_A           13 LTVPECAICLQTCVHP---VSLPCKHVFCYLCVKGASWLGKRCALCRQEIPE   61 (71)
T ss_dssp             SSCCBCSSSSSBCSSE---EEETTTEEEEHHHHHHCTTCSSBCSSSCCBCCH
T ss_pred             CCCCCCccCCcccCCC---EEccCCCHHHHHHHHHHHHCCCcCcCcCchhCH
Confidence            4567899999998776   678999999999999999999999999999864

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.38  E-value=5.7e-13  Score=98.35  Aligned_cols=54  Identities=22%  Similarity=0.547  Sum_probs=46.3

Q ss_pred             CCCcccccccccccCCCceEEe-CcCCccchHHHHHHHhcCCCCccccccccCCCCcc
Q 020491          264 NEDAECCICLSAYDDGVELREL-PCGHHFHCACVDKWLYINATCPLCKYNILKSSSNQ  320 (325)
Q Consensus       264 ~ed~~C~ICL~~y~~~~~lr~L-PC~H~FH~~CI~~WL~~~~tCPlCR~~I~~~~~~~  320 (325)
                      .++..|+||++.|.+.   ..+ +|+|.||.+||++|++.+.+||+||..+...+...
T Consensus        13 ~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~   67 (72)
T 2djb_A           13 TPYILCSICKGYLIDA---TTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQPLS   67 (72)
T ss_dssp             CGGGSCTTTSSCCSSC---EECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCSSCSCC
T ss_pred             CCCCCCCCCChHHHCc---CEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCcccccc
Confidence            4568999999999875   455 99999999999999999999999999997765443

>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}

Probab=99.35  E-value=9.6e-13  Score=97.78  Aligned_cols=54  Identities=26%  Similarity=0.610  Sum_probs=45.6

Q ss_pred             CCCcccccccccccCCCceEEeC-cCCccchHHHHHHHhcC--CCCccccccccCCCCcc
Q 020491          264 NEDAECCICLSAYDDGVELRELP-CGHHFHCACVDKWLYIN--ATCPLCKYNILKSSSNQ  320 (325)
Q Consensus       264 ~ed~~C~ICL~~y~~~~~lr~LP-C~H~FH~~CI~~WL~~~--~tCPlCR~~I~~~~~~~  320 (325)
                      .++..|+||++.|.+.   ..+| |+|.||..||++|++.+  .+||+||..+...+...
T Consensus        13 ~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~   69 (74)
T 2yur_A           13 PDELLCLICKDIMTDA---VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALS   69 (74)
T ss_dssp             CGGGSCSSSCCCCTTC---EECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTTTTT
T ss_pred             CCCCCCcCCChHHhCC---eEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCccccc
Confidence            4568999999999876   6799 99999999999999876  68999999876554443

>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.34  E-value=1.3e-12  Score=99.68  Aligned_cols=53  Identities=28%  Similarity=0.626  Sum_probs=46.4

Q ss_pred             CCCcccccccccccCCCc-eEEeCcCCccchHHHHHHHhcC---CCCccccccccCC
Q 020491          264 NEDAECCICLSAYDDGVE-LRELPCGHHFHCACVDKWLYIN---ATCPLCKYNILKS  316 (325)
Q Consensus       264 ~ed~~C~ICL~~y~~~~~-lr~LPC~H~FH~~CI~~WL~~~---~tCPlCR~~I~~~  316 (325)
                      .++.+|+||++.|.+++. .+.+||+|.||.+||.+|++.+   .+||+||..+...
T Consensus        13 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~   69 (88)
T 2ct2_A           13 REVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRIT   69 (88)
T ss_dssp             CSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCS
T ss_pred             cCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccch
Confidence            456789999999998764 6788999999999999999876   7999999988654

>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}

Probab=99.33  E-value=1.3e-13  Score=111.74  Aligned_cols=50  Identities=28%  Similarity=0.558  Sum_probs=1.0

Q ss_pred             CCcccccccccccCC-------------C--ceEEeCcCCccchHHHHHHHhcCCCCcccccccc
Q 020491          265 EDAECCICLSAYDDG-------------V--ELRELPCGHHFHCACVDKWLYINATCPLCKYNIL  314 (325)
Q Consensus       265 ed~~C~ICL~~y~~~-------------~--~lr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~I~  314 (325)
                      +++.|+||+++|++.             +  .+..+||+|.||..||++||+.+.+||+||.+..
T Consensus        47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~  111 (117)
T 4a0k_B           47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE  111 (117)
T ss_dssp             CC---------------------------------------------------------------
T ss_pred             CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCeee
Confidence            457899999999863             2  2334589999999999999999999999999853

>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.33  E-value=1.5e-12  Score=96.03  Aligned_cols=50  Identities=32%  Similarity=0.668  Sum_probs=43.1

Q ss_pred             CCCcccccccccccCCCceEEeCcCCccchHHHHHHHh---cCCCCccccccccCC
Q 020491          264 NEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLY---INATCPLCKYNILKS  316 (325)
Q Consensus       264 ~ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~---~~~tCPlCR~~I~~~  316 (325)
                      .++..|+||++.|.+.   ..+||+|.||.+||.+|++   .+.+||+||..+..+
T Consensus        18 ~~~~~C~IC~~~~~~~---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~   70 (73)
T 2ysl_A           18 QEEVICPICLDILQKP---VTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKN   70 (73)
T ss_dssp             CCCCBCTTTCSBCSSE---EECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCC
T ss_pred             ccCCEeccCCcccCCe---EEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcc
Confidence            4567999999998865   6679999999999999997   456899999998764

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.31  E-value=1.3e-12  Score=98.52  Aligned_cols=48  Identities=21%  Similarity=0.450  Sum_probs=43.0

Q ss_pred             CCCcccccccccccCCCceEEeCcCCccchHHHHHHHhcCCCCcccccccc
Q 020491          264 NEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNIL  314 (325)
Q Consensus       264 ~ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~I~  314 (325)
                      .++..|+||++.|.+.   ..+||+|.||..||.+|++.+.+||+||..+.
T Consensus        13 ~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~   60 (81)
T 2csy_A           13 EIPFRCFICRQAFQNP---VVTKCRHYFCESCALEHFRATPRCYICDQPTG   60 (81)
T ss_dssp             CCCSBCSSSCSBCCSE---EECTTSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred             CCCCCCcCCCchhcCe---eEccCCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence            3457899999999775   56899999999999999999999999999985

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.30  E-value=2e-12  Score=93.66  Aligned_cols=50  Identities=24%  Similarity=0.560  Sum_probs=43.1

Q ss_pred             CCCcccccccccccCCCceEEeCcCCccchHHHHHHH-hcCCCCccccccccCC
Q 020491          264 NEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWL-YINATCPLCKYNILKS  316 (325)
Q Consensus       264 ~ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL-~~~~tCPlCR~~I~~~  316 (325)
                      .++..|+||++.+.++.   .++|+|.||.+||.+|+ +.+.+||+||..+..+
T Consensus        13 ~~~~~C~IC~~~~~~p~---~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~   63 (66)
T 2ecy_A           13 EDKYKCEKCHLVLCSPK---QTECGHRFCESCMAALLSSSSPKCTACQESIVKD   63 (66)
T ss_dssp             CCCEECTTTCCEESSCC---CCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTT
T ss_pred             CcCCCCCCCChHhcCee---ECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChh
Confidence            45689999999998773   47999999999999999 4677999999998764

>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C

Probab=99.24  E-value=1.9e-12  Score=107.69  Aligned_cols=48  Identities=27%  Similarity=0.837  Sum_probs=43.0

Q ss_pred             CcccccccccccCCCceEEeCcCCccchHHHHHHHhcCCCCccccccccCC
Q 020491          266 DAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILKS  316 (325)
Q Consensus       266 d~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~I~~~  316 (325)
                      +..|+||++.|.++   ..+||+|.||..||.+|++.+.+||+||.++...
T Consensus        53 ~~~C~iC~~~~~~~---~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~  100 (138)
T 4ayc_A           53 ELQCIICSEYFIEA---VTLNCAHSFCSYCINEWMKRKIECPICRKDIKSK  100 (138)
T ss_dssp             HSBCTTTCSBCSSE---EEETTSCEEEHHHHHHHTTTCSBCTTTCCBCCCE
T ss_pred             cCCCcccCcccCCc---eECCCCCCccHHHHHHHHHcCCcCCCCCCcCCCC
Confidence            35799999999876   6799999999999999999999999999998643

>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.24  E-value=1.2e-11  Score=88.65  Aligned_cols=43  Identities=33%  Similarity=0.720  Sum_probs=37.9

Q ss_pred             CCCcccccccccccCCCceEEeCcCCccchHHHHHHHh---cCCCCccc
Q 020491          264 NEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLY---INATCPLC  309 (325)
Q Consensus       264 ~ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~---~~~tCPlC  309 (325)
                      .++..|+||++.|.+.   ..+||+|.||.+||.+|++   .+.+||+|
T Consensus        18 ~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C   63 (63)
T 2ysj_A           18 QEEVICPICLDILQKP---VTIDCGHNFCLKCITQIGETSCGFFKCPLC   63 (63)
T ss_dssp             CCCCBCTTTCSBCSSC---EECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred             ccCCCCCcCCchhCCe---EEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence            4568999999999876   6789999999999999998   45689998

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=99.24  E-value=3.1e-12  Score=104.53  Aligned_cols=54  Identities=28%  Similarity=0.618  Sum_probs=47.2

Q ss_pred             CCCcccccccccccCC----CceEEeCcCCccchHHHHHHHhcCCCCccccccccCCC
Q 020491          264 NEDAECCICLSAYDDG----VELRELPCGHHFHCACVDKWLYINATCPLCKYNILKSS  317 (325)
Q Consensus       264 ~ed~~C~ICL~~y~~~----~~lr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~I~~~~  317 (325)
                      .++.+|+||++.|.++    +..+.++|+|.||.+||++|++.+.+||+||..+....
T Consensus         5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~   62 (133)
T 4ap4_A            5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKR   62 (133)
T ss_dssp             CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTTTC
T ss_pred             CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCcccc
Confidence            3557899999999865    56688999999999999999999999999999987544

>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.21  E-value=1.6e-11  Score=92.57  Aligned_cols=50  Identities=26%  Similarity=0.593  Sum_probs=44.1

Q ss_pred             CCCcccccccccccCCCceEEeCcCCccchHHHHHHHhc------CCCCccccccccCC
Q 020491          264 NEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYI------NATCPLCKYNILKS  316 (325)
Q Consensus       264 ~ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~~------~~tCPlCR~~I~~~  316 (325)
                      .++..|+||++.|.+.   ..+||+|.||..||.+|++.      +..||+||..+...
T Consensus        17 ~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~   72 (85)
T 2ecw_A           17 KEEVTCPICLELLKEP---VSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFG   72 (85)
T ss_dssp             CTTTSCTTTCSCCSSC---EECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTT
T ss_pred             ccCCCCcCCChhhCcc---eeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHH
Confidence            4567999999999887   57899999999999999987      67899999998754

>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.21  E-value=1.3e-11  Score=91.89  Aligned_cols=53  Identities=28%  Similarity=0.565  Sum_probs=44.1

Q ss_pred             CCCcccccccccccCCCceEEeCcCCccchHHHHHHHhcC--CCCccccccccCCCC
Q 020491          264 NEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYIN--ATCPLCKYNILKSSS  318 (325)
Q Consensus       264 ~ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~~~--~tCPlCR~~I~~~~~  318 (325)
                      +...+|+||.+.+..++...  .|+|.||..||++||+.+  .+||+||.+......
T Consensus        13 ~~i~~C~IC~~~i~~g~~C~--~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~~~   67 (74)
T 2ct0_A           13 DAVKICNICHSLLIQGQSCE--TCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEIP   67 (74)
T ss_dssp             SSSCBCSSSCCBCSSSEECS--SSCCEECHHHHHHHSTTCSSCCCTTTCSCCCSCCC
T ss_pred             CCCCcCcchhhHcccCCccC--CCCchhhHHHHHHHHHhcCCCCCCCCcCcCCCCCC
Confidence            34578999999999875443  799999999999999987  899999998765433

>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.20  E-value=1.9e-11  Score=92.22  Aligned_cols=50  Identities=30%  Similarity=0.690  Sum_probs=44.0

Q ss_pred             CCCcccccccccccCCCceEEeCcCCccchHHHHHHHhc------CCCCccccccccCC
Q 020491          264 NEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYI------NATCPLCKYNILKS  316 (325)
Q Consensus       264 ~ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~~------~~tCPlCR~~I~~~  316 (325)
                      .++..|+||++.|.+.   ..+||+|.||.+|+.+|++.      +..||+||..+...
T Consensus        17 ~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~   72 (85)
T 2ecv_A           17 KEEVTCPICLELLTQP---LSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPE   72 (85)
T ss_dssp             CCCCCCTTTCSCCSSC---BCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSS
T ss_pred             cCCCCCCCCCcccCCc---eeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHH
Confidence            4567999999999876   45799999999999999987      78999999998754

>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.18  E-value=1.4e-11  Score=86.47  Aligned_cols=43  Identities=33%  Similarity=0.931  Sum_probs=37.1

Q ss_pred             CCCcccccccccccCCCceEEeCcCCccchHHHHHHH---hcCCCCccc
Q 020491          264 NEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWL---YINATCPLC  309 (325)
Q Consensus       264 ~ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL---~~~~tCPlC  309 (325)
                      .++..|+||++.|.++   ..+||+|.||.+||++|+   +.+.+||+|
T Consensus        13 ~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C   58 (58)
T 2ecj_A           13 QVEASCSVCLEYLKEP---VIIECGHNFCKACITRWWEDLERDFPCPVC   58 (58)
T ss_dssp             CCCCBCSSSCCBCSSC---CCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred             ccCCCCccCCcccCcc---EeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence            3567899999999887   558999999999999995   456889998

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}

Probab=99.17  E-value=5.5e-12  Score=99.19  Aligned_cols=49  Identities=29%  Similarity=0.685  Sum_probs=42.7

Q ss_pred             CCcccccccccccCCCceEE-eCcCCccchHHHHHHHhcC-CCCccccccccCC
Q 020491          265 EDAECCICLSAYDDGVELRE-LPCGHHFHCACVDKWLYIN-ATCPLCKYNILKS  316 (325)
Q Consensus       265 ed~~C~ICL~~y~~~~~lr~-LPC~H~FH~~CI~~WL~~~-~tCPlCR~~I~~~  316 (325)
                      ++..|+||++.|.+.   +. ++|+|.||..||.+|++.+ .+||+||..+...
T Consensus        21 ~~~~C~IC~~~~~~p---~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~   71 (100)
T 3lrq_A           21 EVFRCFICMEKLRDA---RLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLR   71 (100)
T ss_dssp             HHTBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred             CCCCCccCCccccCc---cccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHH
Confidence            457899999999865   55 8999999999999999987 7999999998653

>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2

Probab=99.17  E-value=1.2e-11  Score=92.36  Aligned_cols=50  Identities=26%  Similarity=0.507  Sum_probs=44.0

Q ss_pred             CCCcccccccccccCCCceEEeCcCCccchHHHHHHHhc-CCCCccccccccCC
Q 020491          264 NEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYI-NATCPLCKYNILKS  316 (325)
Q Consensus       264 ~ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~~-~~tCPlCR~~I~~~  316 (325)
                      .++..|+||++.|.++   ..+||+|.||..||.+|++. +.+||+||..+...
T Consensus         6 ~~~~~C~IC~~~~~~P---v~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~   56 (78)
T 1t1h_A            6 PEYFRCPISLELMKDP---VIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHA   56 (78)
T ss_dssp             SSSSSCTTTSCCCSSE---EEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSC
T ss_pred             cccCCCCCccccccCC---EEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChh
Confidence            3567899999999876   66899999999999999987 78999999998654

>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=99.17  E-value=1.5e-11  Score=88.73  Aligned_cols=53  Identities=28%  Similarity=0.542  Sum_probs=43.2

Q ss_pred             CCcccccccc-cccCCCce-EEeCcCCccchHHHHHHHhc-CCCCccccccccCCC
Q 020491          265 EDAECCICLS-AYDDGVEL-RELPCGHHFHCACVDKWLYI-NATCPLCKYNILKSS  317 (325)
Q Consensus       265 ed~~C~ICL~-~y~~~~~l-r~LPC~H~FH~~CI~~WL~~-~~tCPlCR~~I~~~~  317 (325)
                      ++..|+||++ .|.++... ..+||+|.||.+||++|+.. +.+||+||..+.+++
T Consensus         2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~   57 (65)
T 1g25_A            2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSN   57 (65)
T ss_dssp             CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCC
T ss_pred             CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCcccccc
Confidence            3468999999 78777543 45799999999999999765 468999999997654

>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}

Probab=99.17  E-value=6.2e-12  Score=93.97  Aligned_cols=50  Identities=28%  Similarity=0.613  Sum_probs=43.3

Q ss_pred             CCCcccccccccccCCCceEEeCcCCccchHHHHHHHhc-------CCCCccccccccCC
Q 020491          264 NEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYI-------NATCPLCKYNILKS  316 (325)
Q Consensus       264 ~ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~~-------~~tCPlCR~~I~~~  316 (325)
                      .++..|+||++.|.+.   ..+||+|.||.+||.+|++.       +.+||+||..+...
T Consensus        10 ~~~~~C~IC~~~~~~p---~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~   66 (79)
T 2egp_A           10 QEEVTCPICLELLTEP---LSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFE   66 (79)
T ss_dssp             CCCCEETTTTEECSSC---CCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSS
T ss_pred             ccCCCCcCCCcccCCe---eECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHh
Confidence            3567899999999886   45899999999999999987       67899999998653

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=99.16  E-value=1.2e-11  Score=101.04  Aligned_cols=53  Identities=28%  Similarity=0.631  Sum_probs=46.4

Q ss_pred             CCCcccccccccccCC----CceEEeCcCCccchHHHHHHHhcCCCCccccccccCC
Q 020491          264 NEDAECCICLSAYDDG----VELRELPCGHHFHCACVDKWLYINATCPLCKYNILKS  316 (325)
Q Consensus       264 ~ed~~C~ICL~~y~~~----~~lr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~I~~~  316 (325)
                      +++..|+||++.|++.    .....++|+|.||..||++|++.+.+||+||.++.++
T Consensus        70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~  126 (133)
T 4ap4_A           70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHK  126 (133)
T ss_dssp             SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred             CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCChh
Confidence            4567899999999863    4557889999999999999999999999999999764

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}

Probab=99.15  E-value=9.5e-12  Score=97.36  Aligned_cols=48  Identities=23%  Similarity=0.692  Sum_probs=42.6

Q ss_pred             CCcccccccccccCCCceEEe-CcCCccchHHHHHHHhcCCCCccccccccC
Q 020491          265 EDAECCICLSAYDDGVELREL-PCGHHFHCACVDKWLYINATCPLCKYNILK  315 (325)
Q Consensus       265 ed~~C~ICL~~y~~~~~lr~L-PC~H~FH~~CI~~WL~~~~tCPlCR~~I~~  315 (325)
                      ++..|+||++.|.++   ..+ ||+|.||..||.+|++.+.+||+||..+..
T Consensus        21 ~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~   69 (99)
T 2y43_A           21 DLLRCGICFEYFNIA---MIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTE   69 (99)
T ss_dssp             HHTBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred             CCCCcccCChhhCCc---CEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCCh
Confidence            457899999999875   455 899999999999999999999999998875

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A

Probab=99.12  E-value=2.6e-11  Score=96.43  Aligned_cols=49  Identities=24%  Similarity=0.670  Sum_probs=43.2

Q ss_pred             CCcccccccccccCCCceEEe-CcCCccchHHHHHHHhcCCCCccccccccCC
Q 020491          265 EDAECCICLSAYDDGVELREL-PCGHHFHCACVDKWLYINATCPLCKYNILKS  316 (325)
Q Consensus       265 ed~~C~ICL~~y~~~~~lr~L-PC~H~FH~~CI~~WL~~~~tCPlCR~~I~~~  316 (325)
                      ++..|+||++.|.+.   ..+ ||+|.||..||.+|++.+.+||+||..+...
T Consensus        14 ~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~   63 (108)
T 2ckl_A           14 PHLMCVLCGGYFIDA---TTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKT   63 (108)
T ss_dssp             GGTBCTTTSSBCSSE---EEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCSS
T ss_pred             CcCCCccCChHHhCc---CEeCCCCChhhHHHHHHHHHhCCcCcCCCcccccc
Confidence            457899999999875   455 9999999999999999999999999998764

>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}

Probab=99.11  E-value=7.4e-11  Score=90.84  Aligned_cols=48  Identities=29%  Similarity=0.691  Sum_probs=42.1

Q ss_pred             CCCcccccccccccCCCceEEeC-cCCccchHHHHHHHhcC--CCCcccccccc
Q 020491          264 NEDAECCICLSAYDDGVELRELP-CGHHFHCACVDKWLYIN--ATCPLCKYNIL  314 (325)
Q Consensus       264 ~ed~~C~ICL~~y~~~~~lr~LP-C~H~FH~~CI~~WL~~~--~tCPlCR~~I~  314 (325)
                      .++..|+||++.|.++   ..+| |+|.||..||.+|+..+  .+||+||..+.
T Consensus        11 ~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~   61 (92)
T 3ztg_A           11 PDELLCLICKDIMTDA---VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV   61 (92)
T ss_dssp             CTTTEETTTTEECSSC---EECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred             CcCCCCCCCChhhcCc---eECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence            4568999999999977   6899 99999999999999754  58999999874

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}

Probab=99.09  E-value=4e-11  Score=97.70  Aligned_cols=48  Identities=23%  Similarity=0.566  Sum_probs=42.1

Q ss_pred             CCcccccccccccCCCceEEeCcCCccchHHHHHHHhcC-CCCccccccccC
Q 020491          265 EDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYIN-ATCPLCKYNILK  315 (325)
Q Consensus       265 ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~~~-~tCPlCR~~I~~  315 (325)
                      ++..|+||++.|.++   ..+||+|.||..||.+|++.+ .+||+||..+..
T Consensus        51 ~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~   99 (124)
T 3fl2_A           51 ETFQCICCQELVFRP---ITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGR   99 (124)
T ss_dssp             HHTBCTTTSSBCSSE---EECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred             cCCCCCcCChHHcCc---EEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence            346899999999876   678999999999999999855 499999999976

>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=99.05  E-value=7.5e-11  Score=93.90  Aligned_cols=49  Identities=39%  Similarity=0.666  Sum_probs=42.0

Q ss_pred             CcccccccccccCCCceEEeCcCCccchHHHHHHHhcCC---CCccccccccCCC
Q 020491          266 DAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINA---TCPLCKYNILKSS  317 (325)
Q Consensus       266 d~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~~~~---tCPlCR~~I~~~~  317 (325)
                      +..|+||++.|.+.   ..+||+|.||..||.+|+..+.   +||+||..+....
T Consensus        21 ~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~   72 (112)
T 1jm7_A           21 ILECPICLELIKEP---VSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRS   72 (112)
T ss_dssp             HTSCSSSCCCCSSC---CBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTT
T ss_pred             CCCCcccChhhcCe---EECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhh
Confidence            35899999999876   4579999999999999998754   8999999987643

>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B

Probab=99.02  E-value=6.7e-11  Score=101.07  Aligned_cols=49  Identities=27%  Similarity=0.646  Sum_probs=41.8

Q ss_pred             CCcccccccccccCCCceEEeCcCCccchHHHHHHHhc-CCCCccccccccC
Q 020491          265 EDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYI-NATCPLCKYNILK  315 (325)
Q Consensus       265 ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~~-~~tCPlCR~~I~~  315 (325)
                      ++..|+||++.|.+.  +..+||+|.||..||++|++. +.+||+||..+..
T Consensus        53 ~~~~C~IC~~~~~~p--~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~  102 (165)
T 2ckl_B           53 SELMCPICLDMLKNT--MTTKECLHRFCADCIITALRSGNKECPTCRKKLVS  102 (165)
T ss_dssp             HHHBCTTTSSBCSSE--EEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred             CCCCCcccChHhhCc--CEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence            456899999999874  333499999999999999997 7889999999854

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}

Probab=99.01  E-value=4.2e-11  Score=96.19  Aligned_cols=50  Identities=24%  Similarity=0.635  Sum_probs=43.4

Q ss_pred             CCCCcccccccccccCCCceEEeCcCCccchHHHHHHHhc-CCCCccccccccC
Q 020491          263 SNEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYI-NATCPLCKYNILK  315 (325)
Q Consensus       263 ~~ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~~-~~tCPlCR~~I~~  315 (325)
                      ..++..|+||++.|.+.   ..+||+|.||..||.+|++. +.+||+||..+..
T Consensus        12 ~~~~~~C~iC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~   62 (115)
T 3l11_A           12 SLSECQCGICMEILVEP---VTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSS   62 (115)
T ss_dssp             CHHHHBCTTTCSBCSSC---EECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred             CCCCCCCccCCcccCce---eEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence            34568899999999876   67899999999999999976 6789999999863

>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A

Probab=99.01  E-value=1.5e-10  Score=93.47  Aligned_cols=50  Identities=34%  Similarity=0.673  Sum_probs=43.5

Q ss_pred             CCCcccccccccccCCCceEEeCcCCccchHHHHHHHhcCC-CCccccccccCC
Q 020491          264 NEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINA-TCPLCKYNILKS  316 (325)
Q Consensus       264 ~ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~~~~-tCPlCR~~I~~~  316 (325)
                      .++..|+||++.+.++   ..+||+|.||..||.+|++.+. +||+||..+...
T Consensus        16 ~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~   66 (118)
T 3hct_A           16 ESKYECPICLMALREA---VQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLEN   66 (118)
T ss_dssp             CGGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred             CCCCCCCcCChhhcCe---EECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHH
Confidence            4557999999999876   6689999999999999998765 999999998764

>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1

Probab=98.98  E-value=1.2e-10  Score=93.61  Aligned_cols=50  Identities=28%  Similarity=0.666  Sum_probs=43.4

Q ss_pred             CCcccccccccccCCCceEEeCcCCccchHHHHHHHhc-CCCCccccccccCCC
Q 020491          265 EDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYI-NATCPLCKYNILKSS  317 (325)
Q Consensus       265 ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~~-~~tCPlCR~~I~~~~  317 (325)
                      ++..|+||++.+.++   ..+||+|.||..||.+|++. +.+||+||..+...+
T Consensus        22 ~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~   72 (116)
T 1rmd_A           22 KSISCQICEHILADP---VETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTD   72 (116)
T ss_dssp             HHTBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGG
T ss_pred             CCCCCCCCCcHhcCc---EEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhh
Confidence            357899999999876   56899999999999999987 789999999987543

>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}

Probab=98.97  E-value=2.3e-10  Score=96.61  Aligned_cols=49  Identities=16%  Similarity=0.449  Sum_probs=42.8

Q ss_pred             CCcccccccccccCCCceEEeCcCCccchHHHHHHHhcCC-CCccccccccCC
Q 020491          265 EDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINA-TCPLCKYNILKS  316 (325)
Q Consensus       265 ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~~~~-tCPlCR~~I~~~  316 (325)
                      ++..|+||++.|.++   ..+||+|.||..||.+|++.+. +||+||..+...
T Consensus        77 ~~~~C~IC~~~~~~p---v~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~  126 (150)
T 1z6u_A           77 QSFMCVCCQELVYQP---VTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQN  126 (150)
T ss_dssp             HHTBCTTTSSBCSSE---EECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred             cCCEeecCChhhcCC---EEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence            346899999999876   5689999999999999998764 899999999765

>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A

Probab=98.93  E-value=3.5e-10  Score=81.64  Aligned_cols=47  Identities=28%  Similarity=0.541  Sum_probs=40.4

Q ss_pred             CCcccccccccccCCCceEEe--CcCCc-cchHHHHHHHhcCCCCcccccccc
Q 020491          265 EDAECCICLSAYDDGVELREL--PCGHH-FHCACVDKWLYINATCPLCKYNIL  314 (325)
Q Consensus       265 ed~~C~ICL~~y~~~~~lr~L--PC~H~-FH~~CI~~WL~~~~tCPlCR~~I~  314 (325)
                      ++.+|.||++...+.   ..+  ||+|. |+.+|+++|.+.+..||+||.+|.
T Consensus         7 ~~~~C~IC~~~~~~~---~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~   56 (64)
T 2vje_A            7 AIEPCVICQGRPKNG---CIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQ   56 (64)
T ss_dssp             GGSCCTTTSSSCSCE---EEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCC
T ss_pred             CcCCCCcCCCCCCCE---EEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchh
Confidence            457899999986654   444  99999 789999999999999999999885

>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B

Probab=98.91  E-value=1e-09  Score=82.43  Aligned_cols=54  Identities=19%  Similarity=0.432  Sum_probs=41.8

Q ss_pred             CCCcccccccccccCCCc-eEEeCcCCccchHHHHHHHh-cCCCCccccccccCCC
Q 020491          264 NEDAECCICLSAYDDGVE-LRELPCGHHFHCACVDKWLY-INATCPLCKYNILKSS  317 (325)
Q Consensus       264 ~ed~~C~ICL~~y~~~~~-lr~LPC~H~FH~~CI~~WL~-~~~tCPlCR~~I~~~~  317 (325)
                      .++.+|+||++.+...+. ...++|+|.||..|+.++.+ .+..||.||..+....
T Consensus         9 ~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~   64 (78)
T 1e4u_A            9 EDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDP   64 (78)
T ss_dssp             CCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCS
T ss_pred             ccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCc
Confidence            456799999999865432 22234999999999999875 4678999999987654

>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.90  E-value=2.5e-10  Score=80.10  Aligned_cols=48  Identities=21%  Similarity=0.510  Sum_probs=40.8

Q ss_pred             CCcccccccccccCCCceEEeCcCCccchHHHHHHHhcCCCCccccccccCCCC
Q 020491          265 EDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILKSSS  318 (325)
Q Consensus       265 ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~I~~~~~  318 (325)
                      ++..|+||++.|.+.   +.|||+|.||..|+.+|   +..||+||..+....+
T Consensus         5 ~~~~C~IC~~~~~~p---~~l~CgH~fC~~Ci~~~---~~~CP~Cr~~~~~~~~   52 (56)
T 1bor_A            5 QFLRCQQCQAEAKCP---KLLPCLHTLCSGCLEAS---GMQCPICQAPWPLGAD   52 (56)
T ss_dssp             CCSSCSSSCSSCBCC---SCSTTSCCSBTTTCSSS---SSSCSSCCSSSSCCSS
T ss_pred             cCCCceEeCCccCCe---EEcCCCCcccHHHHccC---CCCCCcCCcEeecCCc
Confidence            456899999999987   67999999999999884   6789999999875443

>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3

Probab=98.89  E-value=8.3e-10  Score=78.76  Aligned_cols=47  Identities=32%  Similarity=0.716  Sum_probs=37.8

Q ss_pred             CCcccccccccccCCCceEEeCcC--C---ccchHHHHHHHhc--CCCCcccccccc
Q 020491          265 EDAECCICLSAYDDGVELRELPCG--H---HFHCACVDKWLYI--NATCPLCKYNIL  314 (325)
Q Consensus       265 ed~~C~ICL~~y~~~~~lr~LPC~--H---~FH~~CI~~WL~~--~~tCPlCR~~I~  314 (325)
                      +...|.||+++.  ++++ .+||+  |   .||.+|+++|++.  +.+||+||+.+.
T Consensus         5 ~~~~CrIC~~~~--~~~l-~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~   58 (60)
T 1vyx_A            5 DVPVCWICNEEL--GNER-FRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN   58 (60)
T ss_dssp             SCCEETTTTEEC--SCCC-CCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred             CCCEeEEeecCC--CCce-ecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence            457899999983  3344 58965  4   9999999999975  678999999864

>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*

Probab=98.86  E-value=1.2e-09  Score=105.15  Aligned_cols=48  Identities=29%  Similarity=0.695  Sum_probs=42.4

Q ss_pred             CcccccccccccCCCceEEeCcCCccchHHHHHHHh-cCCCCccccccccCC
Q 020491          266 DAECCICLSAYDDGVELRELPCGHHFHCACVDKWLY-INATCPLCKYNILKS  316 (325)
Q Consensus       266 d~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~-~~~tCPlCR~~I~~~  316 (325)
                      ..+|+||++.+.+.   ..+||+|.||..|+.+|++ .+.+||+||..+...
T Consensus       332 ~~~C~ICle~~~~p---v~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~  380 (389)
T 2y1n_A          332 FQLCKICAENDKDV---KIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGT  380 (389)
T ss_dssp             SSBCTTTSSSBCCE---EEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEE
T ss_pred             CCCCCccCcCCCCe---EEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCCc
Confidence            36899999998664   7899999999999999998 788999999998653

>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2

Probab=98.84  E-value=3.9e-09  Score=82.67  Aligned_cols=51  Identities=14%  Similarity=0.104  Sum_probs=45.8

Q ss_pred             CCCCcccccccccccCCCceEEeCcC-CccchHHHHHHHhcCCCCccccccccCC
Q 020491          263 SNEDAECCICLSAYDDGVELRELPCG-HHFHCACVDKWLYINATCPLCKYNILKS  316 (325)
Q Consensus       263 ~~ed~~C~ICL~~y~~~~~lr~LPC~-H~FH~~CI~~WL~~~~tCPlCR~~I~~~  316 (325)
                      .+++..|+||++-|+|+   ..+||+ |.|...||.+|+..+.+||+||..+...
T Consensus        19 ~p~~~~CpI~~~~m~dP---V~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~   70 (98)
T 1wgm_A           19 ACDEFLDPIMSTLMCDP---VVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMD   70 (98)
T ss_dssp             CCTTTBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTT
T ss_pred             CcHhcCCcCccccccCC---eECCCCCeEECHHHHHHHHHhCCCCCCCCCCCChh
Confidence            35678999999999998   779999 9999999999999899999999988653

>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}

Probab=98.83  E-value=2.4e-09  Score=81.63  Aligned_cols=50  Identities=16%  Similarity=0.174  Sum_probs=45.1

Q ss_pred             CCCcccccccccccCCCceEEeCcCCccchHHHHHHHhcCCCCccccccccCC
Q 020491          264 NEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILKS  316 (325)
Q Consensus       264 ~ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~I~~~  316 (325)
                      +++..|+||++-|+++   ..+||||.|...||.+|+..+.+||+||..+...
T Consensus        12 p~~~~CpI~~~~m~dP---V~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~   61 (85)
T 2kr4_A           12 PDEFRDPLMDTLMTDP---VRLPSGTVMDRSIILRHLLNSPTDPFNRQMLTES   61 (85)
T ss_dssp             CTTTBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred             chheECcccCchhcCC---eECCCCCEECHHHHHHHHhcCCCCCCCcCCCChH
Confidence            4568999999999998   7899999999999999999999999999987643

>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B

Probab=98.83  E-value=3.1e-09  Score=83.53  Aligned_cols=51  Identities=16%  Similarity=0.194  Sum_probs=45.9

Q ss_pred             CCCCcccccccccccCCCceEEeCcCCccchHHHHHHHhcCCCCccccccccCC
Q 020491          263 SNEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILKS  316 (325)
Q Consensus       263 ~~ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~I~~~  316 (325)
                      .+++..|+||++-|.++   ..+||||.|...||.+|+..+.+||+||..+...
T Consensus        26 ~p~~~~CpI~~~~m~dP---V~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~   76 (100)
T 2kre_A           26 APDEFRDPLMDTLMTDP---VRLPSGTIMDRSIILRHLLNSPTDPFNRQTLTES   76 (100)
T ss_dssp             CSTTTBCTTTCSBCSSE---EEETTTEEEEHHHHHHHTTSCSBCSSSCCBCCTT
T ss_pred             CcHhhCCcCccCcccCC---eECCCCCEEchHHHHHHHHcCCCCCCCCCCCChh
Confidence            35678999999999998   7899999999999999999899999999988653

>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}

Probab=98.82  E-value=1e-09  Score=91.66  Aligned_cols=49  Identities=18%  Similarity=0.455  Sum_probs=42.5

Q ss_pred             CCCcccccccccccCCCceEEeCcCCccchHHHHHHHhcCC-CCccccccccC
Q 020491          264 NEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINA-TCPLCKYNILK  315 (325)
Q Consensus       264 ~ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~~~~-tCPlCR~~I~~  315 (325)
                      +++..|+||++.+.++   ..++|+|.||..||.+|++.+. +||+||.++..
T Consensus        29 ~~~~~C~IC~~~~~~p---v~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~   78 (141)
T 3knv_A           29 EAKYLCSACRNVLRRP---FQAQCGHRYCSFCLASILSSGPQNCAACVHEGIY   78 (141)
T ss_dssp             CGGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHGGGSCEECHHHHHTTCC
T ss_pred             CcCcCCCCCChhhcCc---EECCCCCccCHHHHHHHHhcCCCCCCCCCCcccc
Confidence            4567999999999887   6689999999999999998664 89999998743

>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*

Probab=98.81  E-value=1.3e-09  Score=78.29  Aligned_cols=47  Identities=28%  Similarity=0.557  Sum_probs=40.0

Q ss_pred             CcccccccccccCCCceEEe--CcCCc-cchHHHHHHHhcCCCCccccccccC
Q 020491          266 DAECCICLSAYDDGVELREL--PCGHH-FHCACVDKWLYINATCPLCKYNILK  315 (325)
Q Consensus       266 d~~C~ICL~~y~~~~~lr~L--PC~H~-FH~~CI~~WL~~~~tCPlCR~~I~~  315 (325)
                      +..|.||++...+.   ..+  ||+|. |+.+|+.+|.+.+..||+||.+|..
T Consensus         7 ~~~C~IC~~~~~~~---~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~   56 (63)
T 2vje_B            7 LKPCSLCEKRPRDG---NIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQL   56 (63)
T ss_dssp             GSBCTTTSSSBSCE---EEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCCE
T ss_pred             CCCCcccCCcCCCe---EEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhhc
Confidence            46899999986554   344  99998 9999999999988999999999853

>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}

Probab=98.79  E-value=7.6e-10  Score=103.97  Aligned_cols=52  Identities=31%  Similarity=0.742  Sum_probs=41.5

Q ss_pred             CCcccccccccccCCCceE-----EeCcCCccchHHHHHHHhcC-----------CCCccccccccCC
Q 020491          265 EDAECCICLSAYDDGVELR-----ELPCGHHFHCACVDKWLYIN-----------ATCPLCKYNILKS  316 (325)
Q Consensus       265 ed~~C~ICL~~y~~~~~lr-----~LPC~H~FH~~CI~~WL~~~-----------~tCPlCR~~I~~~  316 (325)
                      +..+|+||++.+.++.++.     ..+|+|.||..|+.+||+..           .+||.||++|.-+
T Consensus       307 ~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~s  374 (381)
T 3k1l_B          307 EELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLSTS  374 (381)
T ss_dssp             SCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEGG
T ss_pred             CCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCcc
Confidence            4579999999999844332     24699999999999999853           5799999998643

>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.79  E-value=1.1e-09  Score=88.28  Aligned_cols=47  Identities=23%  Similarity=0.507  Sum_probs=41.0

Q ss_pred             CCcccccccccccCCCceEEe-CcCCccchHHHHHHHhcCCCCccccccccCC
Q 020491          265 EDAECCICLSAYDDGVELREL-PCGHHFHCACVDKWLYINATCPLCKYNILKS  316 (325)
Q Consensus       265 ed~~C~ICL~~y~~~~~lr~L-PC~H~FH~~CI~~WL~~~~tCPlCR~~I~~~  316 (325)
                      ++..|+||++.|.++   ..+ ||+|.||..||.+|+.  ..||+||..+...
T Consensus        21 ~~~~C~IC~~~~~~p---v~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~~   68 (117)
T 1jm7_B           21 KLLRCSRCTNILREP---VCLGGCEHIFCSNCVSDCIG--TGCPVCYTPAWIQ   68 (117)
T ss_dssp             HTTSCSSSCSCCSSC---BCCCSSSCCBCTTTGGGGTT--TBCSSSCCBCSCS
T ss_pred             hCCCCCCCChHhhCc---cEeCCCCCHHHHHHHHHHhc--CCCcCCCCcCccc
Confidence            457899999999877   566 8999999999999998  7899999998543

>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A

Probab=98.77  E-value=1.2e-09  Score=81.07  Aligned_cols=44  Identities=30%  Similarity=0.583  Sum_probs=38.4

Q ss_pred             CCcccccccccccCCCceEEeCcCCc-cchHHHHHHHhcCCCCccccccccC
Q 020491          265 EDAECCICLSAYDDGVELRELPCGHH-FHCACVDKWLYINATCPLCKYNILK  315 (325)
Q Consensus       265 ed~~C~ICL~~y~~~~~lr~LPC~H~-FH~~CI~~WL~~~~tCPlCR~~I~~  315 (325)
                      ++..|+||++.+.+.   ..+||+|. |+..|+.+|    .+||+||..+..
T Consensus        23 ~~~~C~iC~~~~~~~---~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~   67 (74)
T 4ic3_A           23 EEKLCKICMDRNIAI---VFVPCGHLVTCKQCAEAV----DKCPMCYTVITF   67 (74)
T ss_dssp             HHTBCTTTSSSBCCE---EEETTCCBCCCHHHHTTC----SBCTTTCCBCSE
T ss_pred             cCCCCCCCCCCCCCE---EEcCCCChhHHHHhhhcC----ccCCCcCcCccC
Confidence            456899999987664   67899999 999999999    789999998864

>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.68  E-value=1.6e-08  Score=73.87  Aligned_cols=49  Identities=24%  Similarity=0.617  Sum_probs=39.9

Q ss_pred             cCCCCCcccccccccccCCCceEEeCcCCc-cchHHHHHHHhcCCCCccccccccCC
Q 020491          261 VLSNEDAECCICLSAYDDGVELRELPCGHH-FHCACVDKWLYINATCPLCKYNILKS  316 (325)
Q Consensus       261 ~~~~ed~~C~ICL~~y~~~~~lr~LPC~H~-FH~~CI~~WL~~~~tCPlCR~~I~~~  316 (325)
                      ....++..|.||++...+   ...+||+|. |+.+|+..    ...||+||..|...
T Consensus        10 ~~~~~~~~C~IC~~~~~~---~v~~pCgH~~~C~~C~~~----~~~CP~CR~~i~~~   59 (68)
T 2ea5_A           10 PSEENSKDCVVCQNGTVN---WVLLPCRHTCLCDGCVKY----FQQCPMCRQFVQES   59 (68)
T ss_dssp             CSCCCSSCCSSSSSSCCC---CEETTTTBCCSCTTHHHH----CSSCTTTCCCCCCE
T ss_pred             ccCCCCCCCCCcCcCCCC---EEEECCCChhhhHHHHhc----CCCCCCCCcchhce
Confidence            334556899999998655   478999999 99999984    57899999998653

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=98.66  E-value=9.2e-09  Score=88.03  Aligned_cols=50  Identities=34%  Similarity=0.664  Sum_probs=43.4

Q ss_pred             CCCcccccccccccCCCceEEeCcCCccchHHHHHHHhcC-CCCccccccccCC
Q 020491          264 NEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYIN-ATCPLCKYNILKS  316 (325)
Q Consensus       264 ~ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~~~-~tCPlCR~~I~~~  316 (325)
                      .++..|+||++.+.++   ..+||+|.|+..||.+|++.+ .+||+||..+..+
T Consensus        16 ~~~~~C~IC~~~~~~p---v~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~   66 (170)
T 3hcs_A           16 ESKYECPICLMALREA---VQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLEN   66 (170)
T ss_dssp             CGGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred             CCCCCCCCCChhhcCc---EECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchh
Confidence            4567999999999887   568999999999999999864 4999999998764

>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.57  E-value=2.3e-08  Score=77.55  Aligned_cols=46  Identities=20%  Similarity=0.425  Sum_probs=39.6

Q ss_pred             CCCcccccccccccCCCceEEeC-cCCccchHHHHHHHhcC------CCCcc--cccc
Q 020491          264 NEDAECCICLSAYDDGVELRELP-CGHHFHCACVDKWLYIN------ATCPL--CKYN  312 (325)
Q Consensus       264 ~ed~~C~ICL~~y~~~~~lr~LP-C~H~FH~~CI~~WL~~~------~tCPl--CR~~  312 (325)
                      .++..|+||++-|.++   ..+| |+|.|...||.+|+..+      .+||+  |+..
T Consensus         5 ~~~~~CPI~~~~~~dP---V~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~   59 (94)
T 2yu4_A            5 SSGFTCPITKEEMKKP---VKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT   59 (94)
T ss_dssp             SSCCBCTTTCSBCSSE---EEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred             CcEeECcCcCchhcCC---EEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence            3457899999999987   6786 99999999999999864      48999  9865

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.56  E-value=3.4e-08  Score=90.15  Aligned_cols=51  Identities=10%  Similarity=0.070  Sum_probs=44.0

Q ss_pred             CCCCcccccccccccCCCceEEeCcCCccchHHHHHHHhcC-CCCccccccccCC
Q 020491          263 SNEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYIN-ATCPLCKYNILKS  316 (325)
Q Consensus       263 ~~ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~~~-~tCPlCR~~I~~~  316 (325)
                      .+++..|+||++-|.++   ..+||||.|+..||.+|+..+ .+||+||.++...
T Consensus       205 ~~~~~~c~i~~~~~~dP---v~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~  256 (281)
T 2c2l_A          205 IPDYLCGKISFELMREP---CITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQE  256 (281)
T ss_dssp             CCSTTBCTTTCSBCSSE---EECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGG
T ss_pred             CCcccCCcCcCCHhcCC---eECCCCCEECHHHHHHHHHHCCCCCcCCCCCCchh
Confidence            34668899999999988   789999999999999999874 4599999988643

>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.56  E-value=1.2e-08  Score=75.58  Aligned_cols=45  Identities=29%  Similarity=0.574  Sum_probs=37.5

Q ss_pred             CCcccccccccccCCCceEEeCcCCc-cchHHHHHHHhcCCCCccccccccCC
Q 020491          265 EDAECCICLSAYDDGVELRELPCGHH-FHCACVDKWLYINATCPLCKYNILKS  316 (325)
Q Consensus       265 ed~~C~ICL~~y~~~~~lr~LPC~H~-FH~~CI~~WL~~~~tCPlCR~~I~~~  316 (325)
                      ++..|+||++.+.+.   ..+||+|. |+.+|+.+    ...||+||..+...
T Consensus        24 ~~~~C~IC~~~~~~~---~~~pCgH~~~C~~C~~~----~~~CP~Cr~~i~~~   69 (75)
T 2ecg_A           24 EEKLCKICMDRNIAI---VFVPCGHLVTCKQCAEA----VDKCPMCYTVITFK   69 (75)
T ss_dssp             HHHSCSSSCSSCCCB---CCSSSCCCCBCHHHHHH----CSBCTTTCCBCCCC
T ss_pred             CCCCCCcCCCCCCCE---EEecCCCHHHHHHHhhC----CCCCccCCceecCc
Confidence            456899999997665   56899999 99999965    47899999998653

>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.49  E-value=3.8e-08  Score=76.03  Aligned_cols=48  Identities=21%  Similarity=0.549  Sum_probs=40.3

Q ss_pred             CCcccccccccccCCCceEEeCcCCccchHHHHHHHhc--------CCCCcc--cccc
Q 020491          265 EDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYI--------NATCPL--CKYN  312 (325)
Q Consensus       265 ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~~--------~~tCPl--CR~~  312 (325)
                      +..+|+||++++.+++-+...+|+|.|+.+|+.++++.        .-.||.  |+..
T Consensus         4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~   61 (94)
T 1wim_A            4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ   61 (94)
T ss_dssp             SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred             CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence            44689999999988776666689999999999999974        237999  9987

>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A

Probab=98.40  E-value=4e-08  Score=73.76  Aligned_cols=43  Identities=23%  Similarity=0.665  Sum_probs=36.7

Q ss_pred             CcccccccccccCCCceEEeCcCCc-cchHHHHHHHhcCCCCccccccccC
Q 020491          266 DAECCICLSAYDDGVELRELPCGHH-FHCACVDKWLYINATCPLCKYNILK  315 (325)
Q Consensus       266 d~~C~ICL~~y~~~~~lr~LPC~H~-FH~~CI~~WL~~~~tCPlCR~~I~~  315 (325)
                      +..|.||++.+.+.   ..+||+|. |+.+|+.+|    ..||+||..+..
T Consensus        18 ~~~C~IC~~~~~~~---v~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~   61 (79)
T 2yho_A           18 AMLCMVCCEEEINS---TFCPCGHTVCCESCAAQL----QSCPVCRSRVEH   61 (79)
T ss_dssp             HTBCTTTSSSBCCE---EEETTCBCCBCHHHHTTC----SBCTTTCCBCCE
T ss_pred             CCEeEEeCcccCcE---EEECCCCHHHHHHHHHhc----CcCCCCCchhhC
Confidence            46899999986654   78999999 999999987    389999998864

>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C

Probab=98.38  E-value=1.6e-07  Score=81.33  Aligned_cols=50  Identities=10%  Similarity=0.076  Sum_probs=43.5

Q ss_pred             CCCcccccccccccCCCceEEeCcCCccchHHHHHHHhcC-CCCccccccccCC
Q 020491          264 NEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYIN-ATCPLCKYNILKS  316 (325)
Q Consensus       264 ~ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~~~-~tCPlCR~~I~~~  316 (325)
                      +++..|+||++-|.++   ..+||||.|...||.+|+..+ .+||+|+.++...
T Consensus       104 p~~f~CPI~~elm~DP---V~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~  154 (179)
T 2f42_A          104 PDYLCGKISFELMREP---CITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQD  154 (179)
T ss_dssp             CGGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred             cHhhcccCccccCCCC---eECCCCCEECHHHHHHHHHhCCCCCCCCcCCCChh
Confidence            5668999999999987   778999999999999999874 4699999988643

>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A

Probab=98.24  E-value=3e-07  Score=65.53  Aligned_cols=47  Identities=9%  Similarity=0.049  Sum_probs=41.9

Q ss_pred             cccccccccccCCCceEEe-CcCCccchHHHHHHHhcCCCCccccccccCC
Q 020491          267 AECCICLSAYDDGVELREL-PCGHHFHCACVDKWLYINATCPLCKYNILKS  316 (325)
Q Consensus       267 ~~C~ICL~~y~~~~~lr~L-PC~H~FH~~CI~~WL~~~~tCPlCR~~I~~~  316 (325)
                      ..|+||++-++|+   ..+ +|+|.|-..||.+|++.+.+||+++.++...
T Consensus         4 ~~CpIs~~~m~dP---V~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~~   51 (61)
T 2bay_A            4 MLCAISGKVPRRP---VLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIE   51 (61)
T ss_dssp             CCCTTTCSCCSSE---EEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGG
T ss_pred             EEecCCCCCCCCC---EEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCChh
Confidence            4799999999977   667 7999999999999999889999999988654

>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B

Probab=98.24  E-value=2e-07  Score=88.69  Aligned_cols=45  Identities=27%  Similarity=0.646  Sum_probs=39.1

Q ss_pred             CCCcccccccccccCCCceEEeCcCCc-cchHHHHHHHhcCCCCccccccccC
Q 020491          264 NEDAECCICLSAYDDGVELRELPCGHH-FHCACVDKWLYINATCPLCKYNILK  315 (325)
Q Consensus       264 ~ed~~C~ICL~~y~~~~~lr~LPC~H~-FH~~CI~~WL~~~~tCPlCR~~I~~  315 (325)
                      .++..|+||++.+.+.   ..+||+|. ||..|+..|    ..||+||..+..
T Consensus       293 ~~~~~C~IC~~~~~~~---v~lpCgH~~fC~~C~~~~----~~CP~CR~~i~~  338 (345)
T 3t6p_A          293 QEERTCKVCMDKEVSV---VFIPCGHLVVCQECAPSL----RKCPICRGIIKG  338 (345)
T ss_dssp             HTTCBCTTTSSSBCCE---EEETTCCEEECTTTGGGC----SBCTTTCCBCCE
T ss_pred             cCCCCCCccCCcCCce---EEcCCCChhHhHHHHhcC----CcCCCCCCCccC
Confidence            3557899999998765   77899999 999999998    689999998864

>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}

Probab=98.01  E-value=2.6e-06  Score=77.46  Aligned_cols=50  Identities=22%  Similarity=0.442  Sum_probs=41.4

Q ss_pred             CCCcccccccccccCCCceEEeCcCCccchHHHHHHHhcC--CCCcc--ccccccC
Q 020491          264 NEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYIN--ATCPL--CKYNILK  315 (325)
Q Consensus       264 ~ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~~~--~tCPl--CR~~I~~  315 (325)
                      ..+..|+||++-|.++  ++.+.|||.|.+.||.+|++.+  .+||+  |+..+..
T Consensus       179 ~~el~CPIcl~~f~DP--Vts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~  232 (267)
T 3htk_C          179 KIELTCPITCKPYEAP--LISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSM  232 (267)
T ss_dssp             BCCSBCTTTSSBCSSE--EEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECG
T ss_pred             ceeeECcCccCcccCC--eeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCch
Confidence            4567999999999777  3445899999999999999865  47999  9997754

>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}

Probab=97.71  E-value=1.6e-05  Score=61.65  Aligned_cols=47  Identities=23%  Similarity=0.383  Sum_probs=37.4

Q ss_pred             ccccccccccCCCceEEeCcCCccchHHHHHHHhc-CCCCccccccccCC
Q 020491          268 ECCICLSAYDDGVELRELPCGHHFHCACVDKWLYI-NATCPLCKYNILKS  316 (325)
Q Consensus       268 ~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~~-~~tCPlCR~~I~~~  316 (325)
                      -|.+|--.+..  ..|..||+|.|+-+|+..|.++ ..+||.|+.+|..-
T Consensus         3 fC~~C~~Pi~i--ygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~rV   50 (101)
T 3vk6_A            3 FCDKCGLPIKV--YGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQRI   50 (101)
T ss_dssp             BCTTTCSBCSE--EEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSEE
T ss_pred             ecCccCCCeEE--EeeeccccccHHHHHHHHHHhccCCCCcCcCCeeeee
Confidence            36666555443  4589999999999999999865 68899999998653

>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}

Probab=97.67  E-value=2e-05  Score=71.15  Aligned_cols=51  Identities=31%  Similarity=0.599  Sum_probs=41.4

Q ss_pred             CCcccccccccccCCCceEEeC-cCCccchHHHHHHHhcCC--CCccccccccCCCC
Q 020491          265 EDAECCICLSAYDDGVELRELP-CGHHFHCACVDKWLYINA--TCPLCKYNILKSSS  318 (325)
Q Consensus       265 ed~~C~ICL~~y~~~~~lr~LP-C~H~FH~~CI~~WL~~~~--tCPlCR~~I~~~~~  318 (325)
                      .-.+|.||.+-...|   ...+ |+|.||..|+++|++.+.  +||.|+.+-....+
T Consensus       179 ~i~~C~iC~~iv~~g---~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~~~  232 (238)
T 3nw0_A          179 AVKICNICHSLLIQG---QSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEIP  232 (238)
T ss_dssp             TCCBCTTTCSBCSSC---EECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSCCC
T ss_pred             CCCcCcchhhHHhCC---cccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCC
Confidence            357899999998877   3444 999999999999998654  89999998765433

>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}

Probab=94.99  E-value=0.02  Score=40.96  Aligned_cols=47  Identities=23%  Similarity=0.395  Sum_probs=33.2

Q ss_pred             CCcccccccccccCCCceEEeCcCCccchHHHHHHHhcCC----CCcccccccc
Q 020491          265 EDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINA----TCPLCKYNIL  314 (325)
Q Consensus       265 ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~~~~----tCPlCR~~I~  314 (325)
                      .++.|.||-+.   ++.+.--.|...||..|++..|....    .||.|+.+-.
T Consensus        11 ~~~~C~vC~~~---~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~~   61 (66)
T 2lri_C           11 PGARCGVCGDG---TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDVT   61 (66)
T ss_dssp             TTCCCTTTSCC---TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCCC
T ss_pred             CCCCcCCCCCC---CeEEECCCCCCceecccCCCccCcCCCCCEECccccCCCc
Confidence            45789999743   43332224889999999998886543    6999987543

>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}

Probab=93.95  E-value=0.025  Score=43.28  Aligned_cols=36  Identities=14%  Similarity=0.286  Sum_probs=28.7

Q ss_pred             CCcccccccccccCCCceEEeCcCCccchHHHHH-HH
Q 020491          265 EDAECCICLSAYDDGVELRELPCGHHFHCACVDK-WL  300 (325)
Q Consensus       265 ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~-WL  300 (325)
                      ++..|.||+++|..+....-++|+|.|+..|+.. |-
T Consensus         2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h~   38 (101)
T 2jun_A            2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHP   38 (101)
T ss_dssp             CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHSC
T ss_pred             CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHHHhc
Confidence            4578999998865555555589999999999998 54

>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}

Probab=92.72  E-value=0.017  Score=45.19  Aligned_cols=49  Identities=22%  Similarity=0.360  Sum_probs=34.7

Q ss_pred             cccccccccccCCCceEEe--CcCCccchHHHHHHH----h------cCCCCccccccccC
Q 020491          267 AECCICLSAYDDGVELREL--PCGHHFHCACVDKWL----Y------INATCPLCKYNILK  315 (325)
Q Consensus       267 ~~C~ICL~~y~~~~~lr~L--PC~H~FH~~CI~~WL----~------~~~tCPlCR~~I~~  315 (325)
                      ..|.||...|.++.....-  .|...||.+|+.-=-    .      .+-.||.|+..-..
T Consensus         4 ~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~~~   64 (105)
T 2xb1_A            4 YPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTKEG   64 (105)
T ss_dssp             CBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTTTT
T ss_pred             CCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcCCC
Confidence            5799999999877665555  488999999984211    0      23469999765443

>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2

Probab=92.13  E-value=0.045  Score=38.56  Aligned_cols=49  Identities=22%  Similarity=0.416  Sum_probs=34.6

Q ss_pred             CCCcccccccccccCCCceEEe-CcCCccchHHHHHHHh-----cCCCCcccccc
Q 020491          264 NEDAECCICLSAYDDGVELREL-PCGHHFHCACVDKWLY-----INATCPLCKYN  312 (325)
Q Consensus       264 ~ed~~C~ICL~~y~~~~~lr~L-PC~H~FH~~CI~~WL~-----~~~tCPlCR~~  312 (325)
                      .++..|+||-..|.++.....- .|..-||..|+.---.     ..-.||.|+..
T Consensus         4 ~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k   58 (64)
T 1we9_A            4 GSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK   58 (64)
T ss_dssp             SSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred             CCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence            4557899999998766544444 3889999999864322     24569999753

>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}

Probab=91.38  E-value=0.061  Score=40.64  Aligned_cols=53  Identities=23%  Similarity=0.355  Sum_probs=33.6

Q ss_pred             CCCCCcccccccccc-cCCCceEEeC-cCCccchHHHHHHHh--cCCCCcccccccc
Q 020491          262 LSNEDAECCICLSAY-DDGVELRELP-CGHHFHCACVDKWLY--INATCPLCKYNIL  314 (325)
Q Consensus       262 ~~~ed~~C~ICL~~y-~~~~~lr~LP-C~H~FH~~CI~~WL~--~~~tCPlCR~~I~  314 (325)
                      ...++..|.||...- .+++.+..-. |.-.||..|+..=+.  ..=.||.|+....
T Consensus        21 ~~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~~   77 (88)
T 2l43_A           21 LIDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSRA   77 (88)
T ss_dssp             CCCCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHTT
T ss_pred             cCCCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCccc
Confidence            345678999998764 2233333333 778999999975321  1224999976543

>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}

Probab=88.57  E-value=0.24  Score=34.56  Aligned_cols=46  Identities=22%  Similarity=0.543  Sum_probs=30.8

Q ss_pred             CCCcccccccccccCCCceEEeCcCCccchHHHHHHHhcC----CCCcccccc
Q 020491          264 NEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYIN----ATCPLCKYN  312 (325)
Q Consensus       264 ~ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~~~----~tCPlCR~~  312 (325)
                      .++..|.+|-..   ++.+.--.|...||..|++.=+...    =.||.|+..
T Consensus         9 ~~~~~C~vC~~~---g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~   58 (61)
T 2l5u_A            9 DHQDYCEVCQQG---GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKE   58 (61)
T ss_dssp             CCCSSCTTTSCC---SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred             CCCCCCccCCCC---CcEEECCCCChhhhhhccCCCCCCCCCCceECcccccc
Confidence            456789999863   3322222377899999999755432    359999653

>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A

Probab=88.29  E-value=0.18  Score=43.26  Aligned_cols=47  Identities=26%  Similarity=0.501  Sum_probs=34.1

Q ss_pred             cccccccccccCCCc---eEEeC-cCCccchHHHHH------HHh-----cCCCCccccccc
Q 020491          267 AECCICLSAYDDGVE---LRELP-CGHHFHCACVDK------WLY-----INATCPLCKYNI  313 (325)
Q Consensus       267 ~~C~ICL~~y~~~~~---lr~LP-C~H~FH~~CI~~------WL~-----~~~tCPlCR~~I  313 (325)
                      ..|+||-..|.+++.   ....- |.+.||..|+.-      =+.     ..-.||.|+..-
T Consensus         3 ~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~   64 (183)
T 3lqh_A            3 NFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERH   64 (183)
T ss_dssp             CBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSS
T ss_pred             CcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCC
Confidence            469999999998873   44444 889999999842      111     146899998754

>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2

Probab=87.56  E-value=0.2  Score=33.42  Aligned_cols=44  Identities=27%  Similarity=0.562  Sum_probs=27.9

Q ss_pred             ccccccccccCCCceEEeCcCCccchHHHHHHHhcC----CCCccccc
Q 020491          268 ECCICLSAYDDGVELRELPCGHHFHCACVDKWLYIN----ATCPLCKY  311 (325)
Q Consensus       268 ~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~~~----~tCPlCR~  311 (325)
                      .|.||-..-+.++-+.--.|...||..|++.=+...    =.||.|+.
T Consensus         2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~   49 (51)
T 1f62_A            2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP   49 (51)
T ss_dssp             CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred             CCCCCCCCCCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence            588888764333322222388999999997544332    24999964

>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A

Probab=86.37  E-value=0.15  Score=36.19  Aligned_cols=49  Identities=24%  Similarity=0.488  Sum_probs=32.1

Q ss_pred             CCCcccccccccccCCCceEEeCcCCccchHHHHHHHhcC----CCCccccccccC
Q 020491          264 NEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYIN----ATCPLCKYNILK  315 (325)
Q Consensus       264 ~ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~~~----~tCPlCR~~I~~  315 (325)
                      .++..|.||-..   ++.+.-=.|...||..|+++=+...    =.||.|+..-.+
T Consensus         6 ~~~~~C~vC~~~---g~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~~~~   58 (66)
T 1xwh_A            6 KNEDECAVCRDG---GELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQATVQ   58 (66)
T ss_dssp             SCCCSBSSSSCC---SSCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHTCCC
T ss_pred             CCCCCCccCCCC---CCEEEcCCCChhhcccccCCCcCcCCCCCeECccccCcccc
Confidence            356789999864   3322222388999999998655432    249999765433

>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*

Probab=86.22  E-value=0.48  Score=33.53  Aligned_cols=34  Identities=24%  Similarity=0.513  Sum_probs=25.7

Q ss_pred             CCCcccccccccccCCCceEEe--CcCCccchHHHH
Q 020491          264 NEDAECCICLSAYDDGVELREL--PCGHHFHCACVD  297 (325)
Q Consensus       264 ~ed~~C~ICL~~y~~~~~lr~L--PC~H~FH~~CI~  297 (325)
                      +....|++|...|.+++..+.-  .|.-.||..|+.
T Consensus         6 ~~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvg   41 (65)
T 2vpb_A            6 DPVYPCGICTNEVNDDQDAILCEASCQKWFHRICTG   41 (65)
T ss_dssp             ---CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHT
T ss_pred             CCcCcCccCCCccCCCCCeEecccCccccCchhccC
Confidence            4557899999999887765555  588999999983

>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*

Probab=85.78  E-value=0.21  Score=36.11  Aligned_cols=50  Identities=26%  Similarity=0.426  Sum_probs=33.6

Q ss_pred             CCcccccccccccCCCceEEe-CcCCccchHHHHHHHhc----CCCCccccccccC
Q 020491          265 EDAECCICLSAYDDGVELREL-PCGHHFHCACVDKWLYI----NATCPLCKYNILK  315 (325)
Q Consensus       265 ed~~C~ICL~~y~~~~~lr~L-PC~H~FH~~CI~~WL~~----~~tCPlCR~~I~~  315 (325)
                      ++..|.||-.... ++....- .|...||..|+..-...    .-.||.|+..+.+
T Consensus        17 ~~~~C~~C~~~~~-~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~k   71 (75)
T 2k16_A           17 QIWICPGCNKPDD-GSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIKK   71 (75)
T ss_dssp             EEECBTTTTBCCS-SCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHCS
T ss_pred             CCcCCCCCCCCCC-CCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchhh
Confidence            4457999988754 3333333 37899999999754432    2359999887654

>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A

Probab=85.33  E-value=0.19  Score=42.92  Aligned_cols=47  Identities=23%  Similarity=0.410  Sum_probs=31.8

Q ss_pred             CCCcccccccccccCCCceEEeCcCCccchHHHHHHHhcC----CCCccccccc
Q 020491          264 NEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYIN----ATCPLCKYNI  313 (325)
Q Consensus       264 ~ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~~~----~tCPlCR~~I  313 (325)
                      +++..|.+|-..   |+.+.-=.|...||..|+++-+...    =.||.|+..-
T Consensus         2 ~~~~~C~~C~~~---g~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~   52 (184)
T 3o36_A            2 PNEDWCAVCQNG---GELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLS   52 (184)
T ss_dssp             CSCSSCTTTCCC---SSCEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred             CCCCccccCCCC---CeeeecCCCCcccCccccCCCCCCCCCCCEECccccCcc
Confidence            356789999754   4422222377999999998766542    2599998654

>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2

Probab=84.98  E-value=0.47  Score=34.39  Aligned_cols=49  Identities=24%  Similarity=0.369  Sum_probs=31.0

Q ss_pred             cccccccccccCCCceEEeCcCCccchHHHHHHH---------hcCCCCccccccccC
Q 020491          267 AECCICLSAYDDGVELRELPCGHHFHCACVDKWL---------YINATCPLCKYNILK  315 (325)
Q Consensus       267 ~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL---------~~~~tCPlCR~~I~~  315 (325)
                      ..-|||-..+.++.-+.--.|...||..|+.-=-         ...-.||.|+..-.+
T Consensus        16 ~~~C~C~~~~~~~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~~~p   73 (76)
T 1wem_A           16 ALYCICRQPHNNRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTILSGP   73 (76)
T ss_dssp             CCCSTTCCCCCSSCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHSCS
T ss_pred             CCEEECCCccCCCCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCccCc
Confidence            3445999887644322222488999999994211         245679999765433

>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*

Probab=84.57  E-value=0.33  Score=32.63  Aligned_cols=43  Identities=23%  Similarity=0.410  Sum_probs=29.6

Q ss_pred             ccccccccccCCCceEEe--CcCCccchHHHHHHH----hcCCCCcccc
Q 020491          268 ECCICLSAYDDGVELREL--PCGHHFHCACVDKWL----YINATCPLCK  310 (325)
Q Consensus       268 ~C~ICL~~y~~~~~lr~L--PC~H~FH~~CI~~WL----~~~~tCPlCR  310 (325)
                      .|++|...|.+++....-  .|..-||..|+.-=-    ..+-.||.|+
T Consensus         4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~   52 (52)
T 2kgg_A            4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA   52 (52)
T ss_dssp             SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred             cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence            589999998766544443  377899999985321    2456799885

>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3

Probab=84.45  E-value=0.82  Score=34.04  Aligned_cols=33  Identities=24%  Similarity=0.671  Sum_probs=24.3

Q ss_pred             CCCCcccccccccccCCCceEEeC---cCCccchHHHHHH
Q 020491          263 SNEDAECCICLSAYDDGVELRELP---CGHHFHCACVDKW  299 (325)
Q Consensus       263 ~~ed~~C~ICL~~y~~~~~lr~LP---C~H~FH~~CI~~W  299 (325)
                      ...|..|.|| ..|..++   .+|   |+-.||..|+.+=
T Consensus        12 ~~~D~~C~VC-~~~t~~~---l~pCRvC~RvfH~~CL~r~   47 (89)
T 1wil_A           12 VVNDEMCDVC-EVWTAES---LFPCRVCTRVFHDGCLRRM   47 (89)
T ss_dssp             CCCSCCCTTT-CCCCSSC---CSSCSSSSSCCCHHHHHHH
T ss_pred             CCCCcccCcc-ccccccc---eeccccccccccHhhcccc
Confidence            3467899999 4445453   355   6799999999985

>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2

Probab=84.14  E-value=0.53  Score=35.49  Aligned_cols=48  Identities=25%  Similarity=0.431  Sum_probs=32.5

Q ss_pred             CCCCCcccccccccccCCCceEEeCcCCccchHHHHHHHhcC----CCCcccccc
Q 020491          262 LSNEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYIN----ATCPLCKYN  312 (325)
Q Consensus       262 ~~~ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~~~----~tCPlCR~~  312 (325)
                      ...++..|.+|-..   ++.+.--.|.-.||..|+++=+...    -.||.|+..
T Consensus        21 ~d~n~~~C~vC~~~---g~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~   72 (88)
T 1fp0_A           21 LDDSATICRVCQKP---GDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL   72 (88)
T ss_dssp             SSSSSSCCSSSCSS---SCCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred             cCCCCCcCcCcCCC---CCEEECCCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence            34566889999865   4333222377899999997755432    259999754

>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A

Probab=83.84  E-value=0.23  Score=34.70  Aligned_cols=48  Identities=27%  Similarity=0.457  Sum_probs=31.3

Q ss_pred             CCcccccccccccCCCceEEeCcCCccchHHHHHHHhcC----CCCccccccccC
Q 020491          265 EDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYIN----ATCPLCKYNILK  315 (325)
Q Consensus       265 ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~~~----~tCPlCR~~I~~  315 (325)
                      ++..|.+|-+.   ++.+.-=.|...||..|++.=+...    =.||.|+....+
T Consensus         8 ~~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~~k   59 (61)
T 1mm2_A            8 HMEFCRVCKDG---GELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPALK   59 (61)
T ss_dssp             SCSSCTTTCCC---SSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTCCT
T ss_pred             CCCcCCCCCCC---CCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCchhc
Confidence            45679999753   3322222377899999998654432    249999876544

>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=82.58  E-value=0.16  Score=34.82  Aligned_cols=45  Identities=27%  Similarity=0.562  Sum_probs=29.7

Q ss_pred             CCCcccccccccccCCCceEEeCcCCccchHHHHHHHhcC----CCCccccc
Q 020491          264 NEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYIN----ATCPLCKY  311 (325)
Q Consensus       264 ~ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~~~----~tCPlCR~  311 (325)
                      .++..|.+|-..   ++.+.--.|...||..|+++=+...    =.||.|+.
T Consensus         7 ~~~~~C~vC~~~---g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~   55 (56)
T 2yql_A            7 GHEDFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD   55 (56)
T ss_dssp             SSCCSCSSSCCS---SCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred             CCCCCCccCCCC---CeEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence            456789999864   3332222378999999998655432    24888854

>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}

Probab=81.63  E-value=0.42  Score=37.23  Aligned_cols=46  Identities=33%  Similarity=0.620  Sum_probs=30.0

Q ss_pred             CCcccccccccccCCCceEEeCcCCccchHHHHHHHhc----CCCCcccc
Q 020491          265 EDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYI----NATCPLCK  310 (325)
Q Consensus       265 ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~~----~~tCPlCR  310 (325)
                      +++.|.||.+.-+..+.+.--.|...||..|++..+..    +-.||-|+
T Consensus         6 ~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~   55 (111)
T 2ysm_A            6 SGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECK   55 (111)
T ss_dssp             CCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred             CCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCccccccccCccCCcCC
Confidence            56789999877322222333348899999999887642    23466654

>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}

Probab=81.42  E-value=0.15  Score=35.43  Aligned_cols=48  Identities=29%  Similarity=0.596  Sum_probs=32.1

Q ss_pred             CCcccccccccccCCCceEEeCcCCccchHHHHHHHhcC----CCCccccccccC
Q 020491          265 EDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYIN----ATCPLCKYNILK  315 (325)
Q Consensus       265 ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~~~----~tCPlCR~~I~~  315 (325)
                      ++..|.+|-..   ++.+.-=.|...||..|+++=+...    =.||.|+....+
T Consensus         4 ~~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~~~   55 (60)
T 2puy_A            4 HEDFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQMLK   55 (60)
T ss_dssp             CCSSCTTTCCC---SSCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHHHHH
T ss_pred             CCCCCcCCCCC---CcEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccChhhc
Confidence            45789999864   4332222378999999999655432    249999776544

>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2

Probab=81.25  E-value=1.8  Score=31.54  Aligned_cols=47  Identities=26%  Similarity=0.463  Sum_probs=31.3

Q ss_pred             cccccccccccCCCceEEeC-cCCccchHHHHHHHh-----cCCCCccccccc
Q 020491          267 AECCICLSAYDDGVELRELP-CGHHFHCACVDKWLY-----INATCPLCKYNI  313 (325)
Q Consensus       267 ~~C~ICL~~y~~~~~lr~LP-C~H~FH~~CI~~WL~-----~~~tCPlCR~~I  313 (325)
                      ..-|||-..++++.....-- |...||..|+.-=-.     ..-.||.|+..-
T Consensus        12 ~~~C~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~   64 (79)
T 1wep_A           12 PVYCLCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVF   64 (79)
T ss_dssp             CCCSTTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred             ccEEEcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCccccc
Confidence            34559999886554444443 889999999952211     235699998654

>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2

Probab=81.02  E-value=0.39  Score=34.50  Aligned_cols=48  Identities=23%  Similarity=0.366  Sum_probs=31.8

Q ss_pred             CCcccccccccccCCCceEEeC-cCCccchHHHHHHH----hcCCCCccccccc
Q 020491          265 EDAECCICLSAYDDGVELRELP-CGHHFHCACVDKWL----YINATCPLCKYNI  313 (325)
Q Consensus       265 ed~~C~ICL~~y~~~~~lr~LP-C~H~FH~~CI~~WL----~~~~tCPlCR~~I  313 (325)
                      +...| ||-..+.+++....-- |..-||..|+.-=-    ..+-.||.|+..-
T Consensus        15 ~~~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~~   67 (72)
T 1wee_A           15 WKVDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIELS   67 (72)
T ss_dssp             SEECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHHHC
T ss_pred             cceEe-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccCCC
Confidence            34567 8988876665444443 88899999986421    1235699997643

>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=80.82  E-value=0.22  Score=37.80  Aligned_cols=48  Identities=23%  Similarity=0.400  Sum_probs=31.9

Q ss_pred             CCCcccccccccccCCCceEEe-CcCCccchHHHHHHHhcC----CCCcccccc
Q 020491          264 NEDAECCICLSAYDDGVELREL-PCGHHFHCACVDKWLYIN----ATCPLCKYN  312 (325)
Q Consensus       264 ~ed~~C~ICL~~y~~~~~lr~L-PC~H~FH~~CI~~WL~~~----~tCPlCR~~  312 (325)
                      .++..|.||-..-.. +.+..- .|...||..|+++=+...    =.||.|+..
T Consensus        14 ~~~~~C~vC~~~~~~-~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~   66 (92)
T 2e6r_A           14 IDSYICQVCSRGDED-DKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILA   66 (92)
T ss_dssp             CCCCCCSSSCCSGGG-GGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHHH
T ss_pred             cCCCCCccCCCcCCC-CCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcCc
Confidence            456789999877433 233333 388999999998534322    249999764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	325
d1iyma_	55	g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sati	3e-16
d1chca_	68	g.44.1.1 (A:) Immediate early protein, IEEHV {Equi	7e-13
d1fbva4	79	g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [Ta	1e-10
d3dplr1	88	g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of S	4e-09
d1bora_	56	g.44.1.1 (A:) Acute promyelocytic leukaemia proto-	5e-09
d1g25a_	65	g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapi	1e-07
d1ur6b_	52	g.44.1.1 (B:) Not-4 N-terminal RING finger domain	2e-07
d1v87a_	114	g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mou	2e-07
d1jm7a_	103	g.44.1.1 (A:) brca1 RING domain {Human (Homo sapie	1e-06
d1wima_	94	g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA016	2e-06
d1vyxa_	60	g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal do	3e-06
d1rmda2	86	g.44.1.1 (A:1-86) V(D)J recombination activating p	3e-05
d1jm7b_	97	g.44.1.1 (B:) bard1 RING domain {Human (Homo sapie	2e-04

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]} Length = 55

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

 Score = 69.5 bits (170), Expect = 3e-16
 Identities = 25/51 (49%), Positives = 34/51 (66%), Gaps = 1/51 (1%)

Query: 265 EDAECCICLSAYDDGVELRELP-CGHHFHCACVDKWLYINATCPLCKYNIL 314
           +  EC +CL+  +DG E R LP CGH FH  CVD WL  ++TCPLC+  ++
Sbjct: 4   DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]} Length = 68

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

 Score = 60.7 bits (147), Expect = 7e-13
 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 2/52 (3%)

Query: 262 LSNEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNI 313
           ++     C ICL    +      LPC H F   C+ +W+  N TCPLCK  +
Sbjct: 1   MATVAERCPICLEDPSNYS--MALPCLHAFCYVCITRWIRQNPTCPLCKVPV 50

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.6 bits (131), Expect = 1e-10
 Identities = 17/71 (23%), Positives = 24/71 (33%), Gaps = 16/71 (22%)

Query: 256 TPNEHV------------LSNEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYIN 303
           TP +H+            + +    C IC     D       PCGH    +C+  W    
Sbjct: 1   TPQDHIKVTQEQYELYCEMGSTFQLCKICAENDKDVKIE---PCGHLMCTSCLTSWQESE 57

Query: 304 -ATCPLCKYNI 313
              CP C+  I
Sbjct: 58  GQGCPFCRCEI 68

>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.9 bits (121), Expect = 4e-09
 Identities = 14/61 (22%), Positives = 18/61 (29%), Gaps = 15/61 (24%)

Query: 265 EDAECCICLSAYDDGV---------------ELRELPCGHHFHCACVDKWLYINATCPLC 309
               C IC +   D                  +    C H FH  C+ +WL     CPL 
Sbjct: 20  VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLD 79

Query: 310 K 310
            
Sbjct: 80  N 80

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]} Length = 56

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.5 bits (118), Expect = 5e-09
 Identities = 10/49 (20%), Positives = 16/49 (32%), Gaps = 6/49 (12%)

Query: 265 EDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNI 313
           +   C  C +       L   PC H     C++        CP+C+   
Sbjct: 5   QFLRCQQCQAEAKCPKLL---PCLHTLCSGCLEAS---GMQCPICQAPW 47

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: TFIIH Mat1 subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.3 bits (109), Expect = 1e-07
 Identities = 15/55 (27%), Positives = 21/55 (38%), Gaps = 3/55 (5%)

Query: 265 EDAECCICLSAYDDGVELREL--PCGHHFHCACVDKWL-YINATCPLCKYNILKS 316
           +D  C  C +       L+ +   CGH    +CVD         CP C   + KS
Sbjct: 2   DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKS 56

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]} Length = 52

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Not-4 N-terminal RING finger domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.1 bits (106), Expect = 2e-07
 Identities = 10/45 (22%), Positives = 17/45 (37%), Gaps = 2/45 (4%)

Query: 268 ECCICLSAYDDG-VELRELPCGHHFHCACVDKWLYI-NATCPLCK 310
           EC +C+   +   +      CG+     C  +     N  CP C+
Sbjct: 2   ECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACR 46

>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 114

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Deltex protein 2 RING-H2 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 47.0 bits (110), Expect = 2e-07
 Identities = 17/82 (20%), Positives = 25/82 (30%), Gaps = 20/82 (24%)

Query: 259 EHVLSNEDAECCICL---------------SAYDDGVELRELPCGHHFHCACVDKWL--- 300
           E +    + +C IC+                A    V  R   C H FH  C+       
Sbjct: 18  EELKVAPEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNG 77

Query: 301 --YINATCPLCKYNILKSSSNQ 320
               +  CP CK    + +  Q
Sbjct: 78  NKDGSLQCPSCKTIYGEKTGTQ 99

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.3 bits (104), Expect = 1e-06
 Identities = 20/61 (32%), Positives = 26/61 (42%), Gaps = 6/61 (9%)

Query: 265 EDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYIN---ATCPLCKYNILKSSSNQD 321
           +  EC ICL    + V      C H F   C+ K L      + CPLCK +I K S  + 
Sbjct: 20  KILECPICLELIKEPVST---KCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQES 76

Query: 322 R 322
            
Sbjct: 77  T 77

>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: UbcM4-interacting protein 4 (KIAA0161)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.5 bits (102), Expect = 2e-06
 Identities = 10/57 (17%), Positives = 19/57 (33%), Gaps = 8/57 (14%)

Query: 263 SNEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYI--------NATCPLCKY 311
           S+  + C +CL  Y          C   F   C+ +++ +          +CP    
Sbjct: 2   SSGSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAAC 58

>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]} Length = 60

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: IE1B protein (ORF K3), N-terminal domain
species: Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]

 Score = 42.2 bits (98), Expect = 3e-06
 Identities = 10/53 (18%), Positives = 16/53 (30%), Gaps = 4/53 (7%)

Query: 265 EDAECCICLSAYDDGVEL--RELPCGHHFHCACVDKWL--YINATCPLCKYNI 313
           +   C IC     +             + H +C+  WL    N  C +C    
Sbjct: 5   DVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVY 57

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 86

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.9 bits (93), Expect = 3e-05
 Identities = 15/57 (26%), Positives = 22/57 (38%), Gaps = 4/57 (7%)

Query: 265 EDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYI-NATCPLCKYNILKSSSNQ 320
           +   C IC     D VE     C H F   C+ + L +  + CP C+Y    +    
Sbjct: 22  KSISCQICEHILADPVET---SCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLES 75

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 97

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: bard1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.8 bits (87), Expect = 2e-04
 Identities = 13/59 (22%), Positives = 19/59 (32%), Gaps = 4/59 (6%)

Query: 264 NEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILKSSSNQDR 322
            +   C  C +   + V L    C H F   CV   +     CP+C           +R
Sbjct: 20  EKLLRCSRCTNILREPVCL--GGCEHIFCSNCVSDCI--GTGCPVCYTPAWIQDLKINR 74

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	325
d1iyma_	55	EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45	99.73
d1chca_	68	Immediate early protein, IEEHV {Equine herpesvirus	99.54
d1v87a_	114	Deltex protein 2 RING-H2 domain {Mouse (Mus muscul	99.5
d1ur6b_	52	Not-4 N-terminal RING finger domain {Human (Homo s	99.49
d3dplr1	88	RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase	99.47
d1g25a_	65	TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9	99.45
d1fbva4	79	CBL {Human (Homo sapiens) [TaxId: 9606]}	99.39
d2baya1	56	Pre-mRNA splicing factor Prp19 {Baker's yeast (Sac	99.2
d1vyxa_	60	IE1B protein (ORF K3), N-terminal domain {Kaposi's	99.18
d1bora_	56	Acute promyelocytic leukaemia proto-oncoprotein PM	99.18
d1jm7a_	103	brca1 RING domain {Human (Homo sapiens) [TaxId: 96	99.11
d1rmda2	86	V(D)J recombination activating protein 1 (RAG1), d	99.11
d1jm7b_	97	bard1 RING domain {Human (Homo sapiens) [TaxId: 96	98.89
d2c2la2	80	STIP1 homology and U box-containing protein 1, STU	98.88
d1t1ha_	78	E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi	98.88
d1wgma_	98	Ubiquitin conjugation factor E4A {Human (Homo sapi	98.72
d1wima_	94	UbcM4-interacting protein 4 (KIAA0161) {Human (Hom	98.45
d1we9a_	64	PHD finger protein At5g26210 {Thale cress (Arabido	94.08
d1f62a_	51	Williams-Beuren syndrome transcription factor, WST	93.45
d1weva_	88	PHD finger protein 22 {Mouse (Mus musculus) [TaxId	93.09
d1wewa_	78	Sumoylation ligase E3, SIZ1 {Thale cress (Arabidop	92.81
d1wepa_	79	PHD finger protein 8 {Mouse (Mus musculus) [TaxId:	91.22
d1fp0a1	70	Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo	90.27
d1wesa_	71	PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mu	88.91
d1weea_	72	PHD finger protein At1g33420 {Thale cress (Arabido	87.87
d1wila_	89	Hypothetical protein KIAA1045 {Human (Homo sapiens	86.48
d1mm2a_	61	Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606	85.59
d1wema_	76	Death associated transcription factor 1, Datf1 (DI	84.21

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=99.73  E-value=5.1e-19  Score=123.14  Aligned_cols=50  Identities=50%  Similarity=1.194  Sum_probs=46.6

Q ss_pred             CCcccccccccccCCCceEEeC-cCCccchHHHHHHHhcCCCCcccccccc
Q 020491          265 EDAECCICLSAYDDGVELRELP-CGHHFHCACVDKWLYINATCPLCKYNIL  314 (325)
Q Consensus       265 ed~~C~ICL~~y~~~~~lr~LP-C~H~FH~~CI~~WL~~~~tCPlCR~~I~  314 (325)
                      ++.+|+|||++|++++.++.+| |+|.||.+||++|++++.+||+||++|.
T Consensus         4 d~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~Wl~~~~~CP~CR~~i~   54 (55)
T d1iyma_           4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV   54 (55)
T ss_dssp             CSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred             CCCCCeEECccccCCCEEEEeCCCCCcccHHHHHHHHHhCCcCCCCCCEeE
Confidence            4578999999999999999886 9999999999999999999999999874

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

Probab=99.54  E-value=1.2e-15  Score=110.33  Aligned_cols=48  Identities=38%  Similarity=0.849  Sum_probs=42.7

Q ss_pred             CcccccccccccCCCceEEeCcCCccchHHHHHHHhcCCCCccccccccC
Q 020491          266 DAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILK  315 (325)
Q Consensus       266 d~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~I~~  315 (325)
                      .++|+||++.+.++  .+.+||+|.||.+||.+|++.+.+||+||+++..
T Consensus         5 ~d~C~IC~~~~~~~--~~~~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~i~~   52 (68)
T d1chca_           5 AERCPICLEDPSNY--SMALPCLHAFCYVCITRWIRQNPTCPLCKVPVES   52 (68)
T ss_dssp             CCCCSSCCSCCCSC--EEETTTTEEESTTHHHHHHHHSCSTTTTCCCCCC
T ss_pred             CCCCccCCcCccCC--cEEeCCCCcCcHHHHHHHHHhCCcCCCCCcchHh
Confidence            36799999999754  5778999999999999999999999999999853

>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Deltex protein 2 RING-H2 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.50  E-value=8e-15  Score=116.33  Aligned_cols=56  Identities=27%  Similarity=0.497  Sum_probs=44.6

Q ss_pred             CCcccccccccccC---------------CCceEEeCcCCccchHHHHHHHhcC-----CCCccccccccCCCCcc
Q 020491          265 EDAECCICLSAYDD---------------GVELRELPCGHHFHCACVDKWLYIN-----ATCPLCKYNILKSSSNQ  320 (325)
Q Consensus       265 ed~~C~ICL~~y~~---------------~~~lr~LPC~H~FH~~CI~~WL~~~-----~tCPlCR~~I~~~~~~~  320 (325)
                      .+.+|+||++++.+               ...++.+||+|.||.+||++||+.+     .+||+||..+..+..++
T Consensus        24 ~~~~C~IC~e~l~~~~~~~~~~~~~~~~~~~~~~~~~CgH~FH~~Ci~~Wl~~~~~~~~~~CP~CR~~~~~~~~~q   99 (114)
T d1v87a_          24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEKTGTQ   99 (114)
T ss_dssp             CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSCSSSC
T ss_pred             ccccccchhheecccccccccccccccccccceEECCCCChhhHHHHHHHHHhcCcCCCCccccccchhccCcCCC
Confidence            45689999999864               2346778899999999999999853     47999999887665443

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Not-4 N-terminal RING finger domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=2.9e-15  Score=102.59  Aligned_cols=48  Identities=21%  Similarity=0.451  Sum_probs=41.4

Q ss_pred             ccccccccccCCCc-eEEeCcCCccchHHHHHHHhc-CCCCccccccccC
Q 020491          268 ECCICLSAYDDGVE-LRELPCGHHFHCACVDKWLYI-NATCPLCKYNILK  315 (325)
Q Consensus       268 ~C~ICL~~y~~~~~-lr~LPC~H~FH~~CI~~WL~~-~~tCPlCR~~I~~  315 (325)
                      +|+||+++|++++. ++.++|+|.||.+|+++|++. +.+||+||+++.+
T Consensus         2 eCpICl~~~~~~~~~~~~~~CgH~~c~~C~~~w~~~~~~~CP~CR~~~~~   51 (52)
T d1ur6b_           2 ECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPE   51 (52)
T ss_dssp             EETTTTEECCGGGTTCCSSSSSCCCCHHHHHHHTTTSCCBCTTTCCBCSC
T ss_pred             CCcCCChhhhCCCceEEecCCCCccchHHHHHHHhhcCCCCCccCCcCCC
Confidence            79999999987764 455689999999999999985 5679999999864

>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=1.2e-14  Score=110.27  Aligned_cols=49  Identities=29%  Similarity=0.595  Sum_probs=41.7

Q ss_pred             CcccccccccccCCC---------------ceEEeCcCCccchHHHHHHHhcCCCCcccccccc
Q 020491          266 DAECCICLSAYDDGV---------------ELRELPCGHHFHCACVDKWLYINATCPLCKYNIL  314 (325)
Q Consensus       266 d~~C~ICL~~y~~~~---------------~lr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~I~  314 (325)
                      +++|+||++++.+..               .+..+||+|.||..||++||+.+.+||+||++..
T Consensus        21 ~d~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~   84 (88)
T d3dplr1          21 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE   84 (88)
T ss_dssp             SCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred             CCcCEEccchhhCccccccccccccccccCCeEEccccCcccHHHHHHHHHHCCcCCCCCCccc
Confidence            356999998887533               3677899999999999999999999999998764

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: TFIIH Mat1 subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=2.5e-14  Score=102.41  Aligned_cols=53  Identities=28%  Similarity=0.526  Sum_probs=43.0

Q ss_pred             CCcccccccccccCCC--ceEEeCcCCccchHHHHHHHhc-CCCCccccccccCCC
Q 020491          265 EDAECCICLSAYDDGV--ELRELPCGHHFHCACVDKWLYI-NATCPLCKYNILKSS  317 (325)
Q Consensus       265 ed~~C~ICL~~y~~~~--~lr~LPC~H~FH~~CI~~WL~~-~~tCPlCR~~I~~~~  317 (325)
                      ++..|+||++++..+.  .+..+||+|.||.+||.+|++. +.+||+||+++.+++
T Consensus         2 dd~~CpIC~~~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~~CP~CR~~i~~~~   57 (65)
T d1g25a_           2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSN   57 (65)
T ss_dssp             CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCC
T ss_pred             CCCCCCcCCceeecCCceEEEeCccChHhhHHHHHHHhCcCcCCCCCCCcCccccc
Confidence            4578999999875443  4456789999999999999965 568999999987654

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=1.3e-13  Score=102.41  Aligned_cols=50  Identities=28%  Similarity=0.711  Sum_probs=42.5

Q ss_pred             CcccccccccccCCCceEEeCcCCccchHHHHHHHhc-CCCCccccccccCCCC
Q 020491          266 DAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYI-NATCPLCKYNILKSSS  318 (325)
Q Consensus       266 d~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~~-~~tCPlCR~~I~~~~~  318 (325)
                      ...|+||++.+.+   .+.+||+|.||.+||++||+. +.+||+||.+|.....
T Consensus        23 ~~~C~IC~~~~~~---~~~~~CgH~fC~~Ci~~wl~~~~~~CP~Cr~~i~~~~~   73 (79)
T d1fbva4          23 FQLCKICAENDKD---VKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTEP   73 (79)
T ss_dssp             TTBCTTTSSSBCC---EECSSSCCEECHHHHHHHHHTTCCSCTTTCCCCCCCCC
T ss_pred             CCCCccCCCcCCC---eEEeCCCCeeeHHHHHHHHHHCcCcCCCCCcCccCCce
Confidence            3579999998766   478999999999999999975 5789999999976543

>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Pre-mRNA splicing factor Prp19
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.20  E-value=1.6e-12  Score=89.95  Aligned_cols=46  Identities=11%  Similarity=0.114  Sum_probs=41.4

Q ss_pred             ccccccccccCCCceEEeC-cCCccchHHHHHHHhcCCCCccccccccCC
Q 020491          268 ECCICLSAYDDGVELRELP-CGHHFHCACVDKWLYINATCPLCKYNILKS  316 (325)
Q Consensus       268 ~C~ICL~~y~~~~~lr~LP-C~H~FH~~CI~~WL~~~~tCPlCR~~I~~~  316 (325)
                      .|+||++.++++   ..+| |||.||.+||.+|++.+.+||+||.++..+
T Consensus         2 ~C~Ic~~~~~~P---v~~~~cGh~fc~~cI~~~l~~~~~CP~c~~~l~~~   48 (56)
T d2baya1           2 LCAISGKVPRRP---VLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIE   48 (56)
T ss_dssp             CCTTTCSCCSSE---EEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGG
T ss_pred             CCccCCchHHhc---CccCCCCCcccHHHHHHHHhhccCCCccCCcCCHH
Confidence            599999999876   5665 999999999999999999999999988764

>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: IE1B protein (ORF K3), N-terminal domain
species: Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]

Probab=99.18  E-value=4.5e-12  Score=88.84  Aligned_cols=48  Identities=23%  Similarity=0.556  Sum_probs=38.3

Q ss_pred             CCCcccccccccccCCCceEEeCc-----CCccchHHHHHHHh--cCCCCcccccccc
Q 020491          264 NEDAECCICLSAYDDGVELRELPC-----GHHFHCACVDKWLY--INATCPLCKYNIL  314 (325)
Q Consensus       264 ~ed~~C~ICL~~y~~~~~lr~LPC-----~H~FH~~CI~~WL~--~~~tCPlCR~~I~  314 (325)
                      ++...|.||+++++++.   ..||     +|+||..||++|++  .+.+||+||+++.
T Consensus         4 ed~~~C~IC~~~~~~~~---~~~c~c~~c~h~~H~~Cl~~W~~~~~~~~CP~Cr~~~~   58 (60)
T d1vyxa_           4 EDVPVCWICNEELGNER---FRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN   58 (60)
T ss_dssp             CSCCEETTTTEECSCCC---CCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred             CCCCCCccCCccCCCce---eEecccCCCCCEEcHHHHHHHHhhCCCCCCcccCCeee
Confidence            35578999999987653   3444     49999999999995  4568999999874

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=1.4e-12  Score=90.22  Aligned_cols=46  Identities=22%  Similarity=0.552  Sum_probs=40.0

Q ss_pred             cccccccccccCCCceEEeCcCCccchHHHHHHHhcCCCCccccccccCCCC
Q 020491          267 AECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILKSSS  318 (325)
Q Consensus       267 ~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~I~~~~~  318 (325)
                      .+|+||++.|.+.   +.+||+|.||..||++|   +.+||+||.++..+..
T Consensus         7 l~C~IC~~~~~~p---~~lpCgH~fC~~Ci~~~---~~~CP~Cr~~~~~~~~   52 (56)
T d1bora_           7 LRCQQCQAEAKCP---KLLPCLHTLCSGCLEAS---GMQCPICQAPWPLGAD   52 (56)
T ss_dssp             SSCSSSCSSCBCC---SCSTTSCCSBTTTCSSS---SSSCSSCCSSSSCCSS
T ss_pred             CCCcccCcccCCC---EEecCCCHHhHHHHHcC---CCcCcCCCCcccCCCC
Confidence            5899999999877   67899999999999876   6789999999976544

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.11  E-value=1.5e-11  Score=95.49  Aligned_cols=48  Identities=40%  Similarity=0.717  Sum_probs=41.1

Q ss_pred             cccccccccccCCCceEEeCcCCccchHHHHHHHhcC---CCCccccccccCCC
Q 020491          267 AECCICLSAYDDGVELRELPCGHHFHCACVDKWLYIN---ATCPLCKYNILKSS  317 (325)
Q Consensus       267 ~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~~~---~tCPlCR~~I~~~~  317 (325)
                      -.|+||++.|+++   ..+||+|.||..||.+|++.+   ..||+||..+...+
T Consensus        22 l~CpIC~~~~~~p---v~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~   72 (103)
T d1jm7a_          22 LECPICLELIKEP---VSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRS   72 (103)
T ss_dssp             TSCSSSCCCCSSC---CBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTT
T ss_pred             cCCCccCchhCCe---EEcCCCCchhhHHHHHHHHHCCCCCcCcCCCCcCChhh
Confidence            5799999999876   568999999999999999764   47999999986543

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.11  E-value=1.4e-11  Score=92.50  Aligned_cols=48  Identities=29%  Similarity=0.682  Sum_probs=41.9

Q ss_pred             cccccccccccCCCceEEeCcCCccchHHHHHHHhc-CCCCccccccccCCC
Q 020491          267 AECCICLSAYDDGVELRELPCGHHFHCACVDKWLYI-NATCPLCKYNILKSS  317 (325)
Q Consensus       267 ~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~~-~~tCPlCR~~I~~~~  317 (325)
                      ..|+||++.+.+.   ..+||+|.|+..||.+|++. +.+||.||.++.+.+
T Consensus        24 l~C~IC~~~~~~p---v~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~p~~~~~   72 (86)
T d1rmda2          24 ISCQICEHILADP---VETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTD   72 (86)
T ss_dssp             TBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGG
T ss_pred             cCCccCCcchhcc---eecCCCChhhHHHHHHHHhhCCCcCcccCCCCChhh
Confidence            5799999999876   78999999999999999975 568999999886543

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: bard1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.89  E-value=1.2e-10  Score=89.09  Aligned_cols=47  Identities=21%  Similarity=0.452  Sum_probs=38.8

Q ss_pred             CcccccccccccCCCceEEeCcCCccchHHHHHHHhcCCCCccccccccCC
Q 020491          266 DAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILKS  316 (325)
Q Consensus       266 d~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~I~~~  316 (325)
                      .-.|+||++.|.++  +...+|+|.||.+||.+|+.  ..||.||.++...
T Consensus        22 ~l~C~IC~~~~~~p--v~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~~   68 (97)
T d1jm7b_          22 LLRCSRCTNILREP--VCLGGCEHIFCSNCVSDCIG--TGCPVCYTPAWIQ   68 (97)
T ss_dssp             TTSCSSSCSCCSSC--BCCCSSSCCBCTTTGGGGTT--TBCSSSCCBCSCS
T ss_pred             cCCCccCCchhhcC--ceeCCCCCchhHHHHHHHHh--ccccccCCcCchh
Confidence            35899999999877  23357999999999999985  4599999988654

>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.88  E-value=5.1e-10  Score=82.55  Aligned_cols=50  Identities=10%  Similarity=0.100  Sum_probs=43.7

Q ss_pred             CCCcccccccccccCCCceEEeCcCCccchHHHHHHHhc-CCCCccccccccCC
Q 020491          264 NEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYI-NATCPLCKYNILKS  316 (325)
Q Consensus       264 ~ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~~-~~tCPlCR~~I~~~  316 (325)
                      +++-.|+||++-|.++   ..+||||.|+..||.+|+.. +.+||+|+.++...
T Consensus         5 P~~l~CpIc~~l~~dP---v~~~cGhtfc~~ci~~~l~~~~~~cP~c~~~l~~~   55 (80)
T d2c2la2           5 PDYLCGKISFELMREP---CITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQE   55 (80)
T ss_dssp             CSTTBCTTTCSBCSSE---EECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGG
T ss_pred             CccccCcCcCchhhhh---cccCCcCeecHHHHHHHHhcCCccCCCcccccccc
Confidence            5678999999999988   67899999999999999975 56899999988653

>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: E3 ubiquitin ligase PUB14
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.88  E-value=6.7e-10  Score=81.47  Aligned_cols=50  Identities=26%  Similarity=0.501  Sum_probs=44.0

Q ss_pred             CCCcccccccccccCCCceEEeCcCCccchHHHHHHHhcC-CCCccccccccCC
Q 020491          264 NEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYIN-ATCPLCKYNILKS  316 (325)
Q Consensus       264 ~ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~~~-~tCPlCR~~I~~~  316 (325)
                      +++-.|+||++-|.+.   ..++|+|.|+..||.+|++.+ .+||.|+..+...
T Consensus         6 P~~l~CpIc~~~m~dP---V~~~cgh~fc~~ci~~~~~~~~~~cP~~~~~l~~~   56 (78)
T d1t1ha_           6 PEYFRCPISLELMKDP---VIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHA   56 (78)
T ss_dssp             SSSSSCTTTSCCCSSE---EEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSC
T ss_pred             CccCCCcCcCchhhCc---eEccCCCcchHHHHHHHHHHCCCCCCcccccCCcc
Confidence            4678999999999888   678999999999999999875 5799999988654

>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Ubiquitin conjugation factor E4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.72  E-value=6.4e-09  Score=79.60  Aligned_cols=52  Identities=13%  Similarity=0.093  Sum_probs=45.8

Q ss_pred             CCCCCcccccccccccCCCceEEeCcCC-ccchHHHHHHHhcCCCCccccccccCC
Q 020491          262 LSNEDAECCICLSAYDDGVELRELPCGH-HFHCACVDKWLYINATCPLCKYNILKS  316 (325)
Q Consensus       262 ~~~ed~~C~ICL~~y~~~~~lr~LPC~H-~FH~~CI~~WL~~~~tCPlCR~~I~~~  316 (325)
                      ..+++..|+||++-|.|+   ..+||+| .|...||.+||+.+.+||+|+.++...
T Consensus        18 ~~P~~f~CPI~~~lm~dP---V~~~~~~~ty~r~~I~~~l~~~~~~P~~~~~l~~~   70 (98)
T d1wgma_          18 DACDEFLDPIMSTLMCDP---VVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMD   70 (98)
T ss_dssp             SCCTTTBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTT
T ss_pred             CCcHHhCCcCchhHHHHH---HhcccccchhhHHHHHHHHHhcCCcccccccccch
Confidence            346779999999999999   7899765 799999999999999999999998654

>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: UbcM4-interacting protein 4 (KIAA0161)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.45  E-value=2.9e-08  Score=74.91  Aligned_cols=46  Identities=20%  Similarity=0.488  Sum_probs=37.7

Q ss_pred             CcccccccccccCCCceEEeCcCCccchHHHHHHHhcC--------CCCccccc
Q 020491          266 DAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYIN--------ATCPLCKY  311 (325)
Q Consensus       266 d~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~~~--------~tCPlCR~  311 (325)
                      ..+|+||++++..++..+.++|+|.||.+|+.+|++.+        -+||.|+-
T Consensus         5 ~~~C~IC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C   58 (94)
T d1wima_           5 SSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAAC   58 (94)
T ss_dssp             BCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTC
T ss_pred             CCcCccCCCcccCCceEEECCCCCEeCCcCHHHHHHHHHhcCCccccCCcCCCC
Confidence            36899999999887777777899999999999999632        25998643

>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein At5g26210
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=94.08  E-value=0.011  Score=40.19  Aligned_cols=49  Identities=22%  Similarity=0.416  Sum_probs=35.4

Q ss_pred             CCcccccccccccCCCceEEeC-cCCccchHHHHHH---Hh--cCCCCccccccc
Q 020491          265 EDAECCICLSAYDDGVELRELP-CGHHFHCACVDKW---LY--INATCPLCKYNI  313 (325)
Q Consensus       265 ed~~C~ICL~~y~~~~~lr~LP-C~H~FH~~CI~~W---L~--~~~tCPlCR~~I  313 (325)
                      .+..|.+|...+++++....-. |+..||..|++.=   ..  .+-.||.|+..-
T Consensus         5 ~~~~C~~C~~~~~~~~~~I~Cd~C~~w~H~~C~~~~~~~~~~~~~w~C~~C~~~~   59 (64)
T d1we9a_           5 SSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNKS   59 (64)
T ss_dssp             SCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTTT
T ss_pred             CCCcCcCcCCCCCCCCCEEEcCCCCccCCcccCCcChHHCCCCCeEECcCCcCcC
Confidence            3468999999988877655555 8999999999631   11  134699997643

>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Williams-Beuren syndrome transcription factor, WSTF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.45  E-value=0.012  Score=37.98  Aligned_cols=44  Identities=32%  Similarity=0.656  Sum_probs=29.8

Q ss_pred             cccccccccccCCCceEEeC-cCCccchHHHHHHHhcCC----CCccccc
Q 020491          267 AECCICLSAYDDGVELRELP-CGHHFHCACVDKWLYINA----TCPLCKY  311 (325)
Q Consensus       267 ~~C~ICL~~y~~~~~lr~LP-C~H~FH~~CI~~WL~~~~----tCPlCR~  311 (325)
                      +.|.||-..-+. +.+..-. |+..||.+|++.-+....    .||.||.
T Consensus         1 a~C~vC~~~~~~-~~~i~Cd~C~~~~H~~C~~p~~~~~p~~~W~C~~C~~   49 (51)
T d1f62a_           1 ARCKVCRKKGED-DKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP   49 (51)
T ss_dssp             CCCTTTCCSSCC-SCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred             CCCcCcCCCCCC-CCEEEcCCCCCCCCCCCCCCCCCcCCCCCEECcCCcC
Confidence            358888766333 3333333 789999999998765432    4999975

>d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein 22
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.09  E-value=0.004  Score=45.20  Aligned_cols=53  Identities=19%  Similarity=0.399  Sum_probs=33.4

Q ss_pred             CcccccccccccC-CCceEEeC-cCCccchHHHHHHHh-----c---CCCCccccccccCCCC
Q 020491          266 DAECCICLSAYDD-GVELRELP-CGHHFHCACVDKWLY-----I---NATCPLCKYNILKSSS  318 (325)
Q Consensus       266 d~~C~ICL~~y~~-~~~lr~LP-C~H~FH~~CI~~WL~-----~---~~tCPlCR~~I~~~~~  318 (325)
                      +..|.||-....+ +..+..-- |+..||..|++..+.     .   .=.||.|+....+...
T Consensus        16 ~~~C~iC~~~~~~~~~~~v~Cd~C~~~~H~~C~~p~~~~~~~~~~~~~W~C~~C~~~~~~~~~   78 (88)
T d1weva_          16 GLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMKRMAQ   78 (88)
T ss_dssp             CCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHCCSTT
T ss_pred             cCCccCCCCccCCCCCeEEEcCCCCCccccccCCCcccccccccCCCeEECcccCchHhhhhh
Confidence            3579999865433 23343333 789999999874432     1   2359999766554433

>d1wewa_ g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Sumoylation ligase E3, SIZ1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=92.81  E-value=0.017  Score=40.77  Aligned_cols=48  Identities=17%  Similarity=0.301  Sum_probs=30.4

Q ss_pred             cccccccccccCCCceEEeC---cCCccchHHHHH----HHh-----cCCCCccccccccC
Q 020491          267 AECCICLSAYDDGVELRELP---CGHHFHCACVDK----WLY-----INATCPLCKYNILK  315 (325)
Q Consensus       267 ~~C~ICL~~y~~~~~lr~LP---C~H~FH~~CI~~----WL~-----~~~tCPlCR~~I~~  315 (325)
                      ...+||-...+++.. ..+-   |...||..|+.-    .-.     ..-.||.|+..-.+
T Consensus        16 ~~~C~C~~~~~~~~~-i~c~c~~C~~W~H~~Cvgi~~~~~~~~~~~~~~~~C~~C~~~~~p   75 (78)
T d1wewa_          16 KVRCVCGNSLETDSM-IQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTSGP   75 (78)
T ss_dssp             CCCCSSCCCCCCSCE-EECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCCSC
T ss_pred             ccEeECCCccCCCcE-EEEeCCCCCcCCCccccCccccccccccCCCCEEECCCCcCcCCC
Confidence            344499988765543 3553   889999999831    101     12469999765433

>d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein 8
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.22  E-value=0.17  Score=35.43  Aligned_cols=48  Identities=25%  Similarity=0.455  Sum_probs=33.4

Q ss_pred             cccccccccccCCCceEEeC-cCCccchHHHH--HHH-hc--CCCCcccccccc
Q 020491          267 AECCICLSAYDDGVELRELP-CGHHFHCACVD--KWL-YI--NATCPLCKYNIL  314 (325)
Q Consensus       267 ~~C~ICL~~y~~~~~lr~LP-C~H~FH~~CI~--~WL-~~--~~tCPlCR~~I~  314 (325)
                      ..++||-..+++++....-- |+-.||..|+.  ..- ..  +-.||.|+..-.
T Consensus        12 pv~CiC~~~~~~~~~mI~Cd~C~~W~H~~C~g~~~~~~~~~~~~~C~~C~~~~g   65 (79)
T d1wepa_          12 PVYCLCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVFG   65 (79)
T ss_dssp             CCCSTTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTSC
T ss_pred             CeEeECCCccCCCCcEEECCCCCCcEeccccCcchhcCCCCCEEECccCcCCcC
Confidence            57779998887666554554 88999999994  221 11  357999987543

>d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Nuclear corepressor KAP-1 (TIF-1beta)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.27  E-value=0.052  Score=37.33  Aligned_cols=44  Identities=27%  Similarity=0.454  Sum_probs=29.3

Q ss_pred             cccccccccccCCCceEEe-CcCCccchHHHHHHHhcCC----CCcccccccc
Q 020491          267 AECCICLSAYDDGVELREL-PCGHHFHCACVDKWLYINA----TCPLCKYNIL  314 (325)
Q Consensus       267 ~~C~ICL~~y~~~~~lr~L-PC~H~FH~~CI~~WL~~~~----tCPlCR~~I~  314 (325)
                      ..|.+|-..   ++ +..- .|...||..|++..+....    .||.|+..-.
T Consensus         8 ~~C~~C~~~---~~-ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~~   56 (70)
T d1fp0a1           8 TICRVCQKP---GD-LVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLPD   56 (70)
T ss_dssp             SCCSSSCSS---SC-CEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCCCS
T ss_pred             CCCCCCCCc---CE-EEECCCCChhhccccCCCCcCcCCCCCEECcCCcCcCc
Confidence            567777532   43 3333 3889999999998875432    4999965443

>d1wesa_ g.50.1.2 (A:) PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD Inhibitor of growth protein 2, Ing2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.91  E-value=0.099  Score=36.07  Aligned_cols=45  Identities=27%  Similarity=0.640  Sum_probs=27.1

Q ss_pred             CCcccccccccccCCCceEEeC---cC-CccchHHHHHHHhcC----CCCccccccc
Q 020491          265 EDAECCICLSAYDDGVELRELP---CG-HHFHCACVDKWLYIN----ATCPLCKYNI  313 (325)
Q Consensus       265 ed~~C~ICL~~y~~~~~lr~LP---C~-H~FH~~CI~~WL~~~----~tCPlCR~~I  313 (325)
                      ++..++||-.... ++ ....-   |. ..||..|+.  +...    -.||.|+..=
T Consensus        14 ~e~~~CiC~~~~~-~~-~i~c~~~~C~~~wfH~~Cvg--l~~~p~~~w~C~~C~~~~   66 (71)
T d1wesa_          14 NEPTYCLCNQVSY-GE-MIGCDNEQCPIEWFHFSCVS--LTYKPKGKWYCPKCRGDS   66 (71)
T ss_dssp             SSCCCSTTCCCCC-SS-EECCSCTTCSCCCEETTTTT--CSSCCSSCCCCTTTSSCC
T ss_pred             CCCCEEEeCCCCC-CC-EEEEECCCCCCcCccCccCC--CCcCCCCcEECcCCcccc
Confidence            3446779987643 33 22232   44 469999984  3322    3599997653

>d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein At1g33420
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=87.87  E-value=0.061  Score=37.03  Aligned_cols=44  Identities=25%  Similarity=0.413  Sum_probs=30.3

Q ss_pred             ccccccccCCCceEEeC-cCCccchHHHHHHHh----cCCCCccccccc
Q 020491          270 CICLSAYDDGVELRELP-CGHHFHCACVDKWLY----INATCPLCKYNI  313 (325)
Q Consensus       270 ~ICL~~y~~~~~lr~LP-C~H~FH~~CI~~WL~----~~~tCPlCR~~I  313 (325)
                      +||-..+++++....-- |+..||..|+..=..    ..-.||.|+..-
T Consensus        19 C~C~~~~~~~~~mv~Cd~C~~w~H~~C~g~~~~~~~~~~~~C~~C~~~~   67 (72)
T d1weea_          19 CKCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIELS   67 (72)
T ss_dssp             CTTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHHHC
T ss_pred             eeCCCCcCCCCeEEEeCCCCCcCchhhcCCccccCCCCcEECcCCcCcC
Confidence            48988877776555554 889999999854111    234699997653

>d1wila_ g.50.1.3 (A:) Hypothetical protein KIAA1045 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: variant PHD-like domain
domain: Hypothetical protein KIAA1045
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.48  E-value=0.24  Score=34.96  Aligned_cols=33  Identities=24%  Similarity=0.671  Sum_probs=26.0

Q ss_pred             CCCCcccccccccccCCCceEEeC---cCCccchHHHHHH
Q 020491          263 SNEDAECCICLSAYDDGVELRELP---CGHHFHCACVDKW  299 (325)
Q Consensus       263 ~~ed~~C~ICL~~y~~~~~lr~LP---C~H~FH~~CI~~W  299 (325)
                      ...|..|.|| +-|..++.   +|   |+.+||..|+.+-
T Consensus        12 v~~D~mC~vC-~v~t~~~l---~pCRvCtRv~H~~CL~r~   47 (89)
T d1wila_          12 VVNDEMCDVC-EVWTAESL---FPCRVCTRVFHDGCLRRM   47 (89)
T ss_dssp             CCCSCCCTTT-CCCCSSCC---SSCSSSSSCCCHHHHHHH
T ss_pred             CCcCcccccc-Ccccccce---ecceeecchhhHHHHHHh
Confidence            4567899999 77777754   46   5699999999985

>d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Mi2-beta (CHD4)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.59  E-value=0.065  Score=35.72  Aligned_cols=47  Identities=28%  Similarity=0.464  Sum_probs=30.6

Q ss_pred             CcccccccccccCCCceEEeCcCCccchHHHHHHHhcC----CCCccccccccC
Q 020491          266 DAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYIN----ATCPLCKYNILK  315 (325)
Q Consensus       266 d~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~~~----~tCPlCR~~I~~  315 (325)
                      +..|.+|-+.   ++.+.-=.|+-.||..|++.-+...    =.||.|+..-.+
T Consensus         9 ~~~C~~C~~~---g~lv~Cd~C~~~~H~~C~~~~~~~~~~~~W~C~~C~~~~~k   59 (61)
T d1mm2a_           9 MEFCRVCKDG---GELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPALK   59 (61)
T ss_dssp             CSSCTTTCCC---SSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTCCT
T ss_pred             cCCCcCCCCC---CeEEEeCCCCccCchhhcCCCcCcCCCCcEECCCCcCcccC
Confidence            3569999743   4322222377999999998766532    259999866544

>d1wema_ g.50.1.2 (A:) Death associated transcription factor 1, Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Death associated transcription factor 1, Datf1 (DIO-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=84.21  E-value=0.42  Score=32.70  Aligned_cols=47  Identities=26%  Similarity=0.496  Sum_probs=29.3

Q ss_pred             cccccccccccCCCceEEeC-cCCccchHHHH------HHH---hcCCCCccccccccC
Q 020491          267 AECCICLSAYDDGVELRELP-CGHHFHCACVD------KWL---YINATCPLCKYNILK  315 (325)
Q Consensus       267 ~~C~ICL~~y~~~~~lr~LP-C~H~FH~~CI~------~WL---~~~~tCPlCR~~I~~  315 (325)
                      ..| ||-..+.++. ..+-- |.-.||..|+.      ...   ..+-.||.|+..-.+
T Consensus        17 ~~C-iC~~~~~~~~-mi~Cd~C~~w~H~~Cvg~~~~~~~~~~~~~~~w~C~~C~~~~~p   73 (76)
T d1wema_          17 LYC-ICRQPHNNRF-MICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTILSGP   73 (76)
T ss_dssp             CCS-TTCCCCCSSC-EEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHSCS
T ss_pred             CEE-ECCCccCCCe-EEEECCCCCcCCccccCCCcccccccCCCCCcEECCCCcCcCCC
Confidence            345 8987765543 33333 77899999982      111   124689999765433