Citrus Sinensis ID: 020493

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-----
Protein Sequence
MEGCSKTGEQACPQLLDLMAKERREWRVMRDGEASSSEEKKLELRLGPPGGEDKRWSLKDSTNRERDDHHHQYLLSLGYFSSTNNSNNNGFSFLHHHSSRSLPVMAKESSQPCCTKVADLQSPAEKKAFLSSAPAKNTAVPNSSQKRTAPAPVVGWPPIRSFRKNLAGASASKLPASESPNDVPSKTVDEKPAHEPGRKNPFVKINMDGVPIGRKVDLNAYDSYEKLSAAVDELFRGLLAAQRDSSAGGIVNKQEEEKAITGVLDGSGEYTLVYEDNEGDRMLVGDVPWHMFVSTVTRLRVLKSSEVSALSREKFGNSRQDKILA
Secondary Structure (PSIPRED)
cccccccccccccccccccHHccccEEEccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccccccccHHHHHHHcccccccccccccccccccccccccccccccccEEEEEEccccEEEEEcccccccHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHccccccccEEEEEEcccccEEEcccccHHHHHHHccccEEEccHHHHcccHHHccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccccccccccccEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHccccccccccccccccccccccccccccccccEccccccHHHHHHHHHccccccccccccccccccccccHcccccccccEEEEEEccccccEEEEcHHHHccHHHHHHHHHHHHcccEEccccccccccccccccHHHHHHHccccccEEEEEEcccccEEEEccccHHHHHHHHHHHEEEcccHHHcccHHHHHHcccccccc
Coil and Loop (DISEMBL)
megcsktgeqACPQLLDLMAKERREWRvmrdgeassseEKKLElrlgppggedkrwslkdstnrerddhhHQYLLSLGyfsstnnsnnngfsflhhhssrslpvmakessqpcctkvadlqspaekkaflssapakntavpnssqkrtapapvvgwppirsfrknlagasasklpasespndvpsktvdekpahepgrknpfvkinmdgvpigrkvdlnayDSYEKLSAAVDELFRGLLAAqrdssaggivnkqEEEKAITGvldgsgeytlvyednegdrmlvgdvpwhmFVSTVTRLRVLKSSEVSalsrekfgnsrqdkila
Flexible Loop (DISEMBL)
megcsktgeqacpQLLDLMAKERREWRVMrdgeassseekklelrlgppggedkrwslKDSTNRERDDHHHQYLLSLGYFSSTNNSNNNGFSFLHHHSSRSLPVMAKESSQPCCTKVADLQSPAEKKAFLssapakntavpnssqkrtapapvvgwppIRSFRKNLAGASasklpasespndvpsktvdekpahepgrknpfvkinmdgvPIGRKVDLNAYDSYEKLSAAVDELFRGLLAAqrdssaggivnkqeeekaitgvldgsgeYTLVYEDNEGDRMLVGDVPWHMFVSTVtrlrvlkssevsalsrekfgnsrqdkila
Low Complexity Region (SEG)
MEGCSKTGEQACPQLLDLMAKERREWRVMRDGEAssseekklelRLGPPGGEDKRWSLKDSTNRERDDHHHQYLLSLGYfsstnnsnnngfsflhhhssrslPVMAKESSQPCCTKVADLQSPAEKKAFLSSAPAKNTAVPNSSQKRTAPAPVVGWPPIRSFRKNLAGASASKLPASESPNDVPSKTVDEKPAHEPGRKNPFVKINMDGVPIGRKVDLNAYDSYEKLSAAVDELFRGLLAAQRDSSAGGIVNKQEEEKAITGVLDGSGEYTLVYEDNEGDRMLVGDVPWHMFVSTVTRLRVLKSSEVSALSREKFGNSRQDKILA
Disordered region (IsUnstruct)
***********************************************************************QYLLSLGYFS************************************************************************************************************************FVKINMDGVPIGRKVDLNAYDSYEKLSAAVDELFRGLLAAQ****************AITGVLDGSGEYTLVYEDNEGDRMLVGDVPWHMFVSTVTRLRVL***********************
Disordered Region (DISOPRED)
******************************************ELRLGPPG*******************************************************************************************************VGWPPIRS**************************************NPFVKINMDGVPIGRKVDLNAYDSYEKLSAAVDELFRGLLAA*********************VLDGSGEYTLVYEDNEGDRMLVGDVPWHMFVSTVTRLRVL***********************
Disordered Region (DISEMBL)
*********QACPQLLDLMAKERREWRV************KLELRLGPPGGEDKRWSLKDSTNRERDDHHHQYLLSLGYFSSTNNSNNNGFSFLHHHSS***************TKVADLQSPAEKKA**********************APVVGWPPIRSFRKNLAG***************************PGRKNPFVKINMDGVPIGRKVDLNAYDSYEKLSAAVDELFRGLLAAQRDSSAGGIVNKQEEEKAITGVLDGSGEYTLVYEDNEGDRMLVGDVPWHMFVSTVTRLRVLKSSEVSALSR*************
Disordered Region (DISPRO)
************P*******KERREWRV*******SSEEKKLELRLGPPG*****************************************************************************************************PVVGWPPIRSFRKNLAGA****************************RKNPFVKINMDGVPIGRKVDLNAYDSYEKLSAAVDELFRGLLAAQRDS**********EEKAITGVLDGSGEYTLVYEDNEGDRMLVGDVPWHMFVSTVTRLRVLKSSEVSALSREKF**********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MEGCSKTGEQACPQLLDLMAKERREWRVMRDGEASSSEEKKLELRLGPPGGEDKRWSLKDSTNRERDDHHHQYLLSLGYFSSTNNSNNNGFSFLHHHSSRSLPVMAKESSQPCCTKVADLQSPAEKKAFLSSAPAKNTAVPNSSQKRTAPAPVVGWPPIRSFRKNLAGASASKLPASESPNDVPSKTVDEKPAHEPGRKNPFVKINMDGVPIGRKVDLNAYDSYEKLSAAVDELFRGLLAAQRDSSAGGIVNKQEEEKAITGVLDGSGEYTLVYEDNEGDRMLVGDVPWHMFVSTVTRLRVLKSSEVSALSREKFGNSRQDKILA
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	325	2.2.26 [Sep-21-2011]
Q8LAL2	269	Auxin-responsive protein	yes	no	0.803	0.970	0.474	2e-67
O24408	267	Auxin-responsive protein	no	no	0.790	0.962	0.474	2e-62
Q5W670	327	Auxin-responsive protein	yes	no	0.867	0.862	0.418	6e-52
Q6H543	300	Auxin-responsive protein	no	no	0.48	0.52	0.587	6e-52
Q8LQ74	335	Auxin-responsive protein	no	no	0.901	0.874	0.4	2e-49
P0C127	228	Auxin-responsive protein	no	no	0.526	0.75	0.537	2e-43
Q9LG86	238	Auxin-responsive protein	no	no	0.489	0.668	0.539	1e-36
Q9XFM0	175	Auxin-responsive protein	no	no	0.412	0.765	0.450	2e-29
Q38829	246	Auxin-responsive protein	no	no	0.486	0.642	0.426	3e-29
Q9ZSY8	305	Auxin-responsive protein	no	no	0.504	0.537	0.418	3e-29

>sp|Q8LAL2|IAA26_ARATH Auxin-responsive protein IAA26 OS=Arabidopsis thaliana GN=IAA26 PE=1 SV=2

 Score =  256 bits (654), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 157/331 (47%), Positives = 201/331 (60%), Gaps = 70/331 (21%)

Query: 1   MEGCSKTGEQACPQLLDLMAKERREWRVMRDGEASSSEEKKLELRLGPPGGEDKRWSLKD 60
           MEGC +  E   P+LLDL+ + R+ W   ++ + ++ +EKKLELRLGPPGG++       
Sbjct: 1   MEGCPRNREIG-PKLLDLIPQGRK-W--YQEDKNNTDQEKKLELRLGPPGGDE------- 49

Query: 61  STNRERDDHHHQYLLSLGYFSSTNNSNNNGFSFLHHHSSRSLPVMAKESSQPCCTKVADL 120
                 +DH           S+    N                           T++ ++
Sbjct: 50  ------EDH-----------SAIKKKN---------------------------TEIRNI 65

Query: 121 QSPAEKKAFLS------SAPAKNTAVPNSSQKRTAPAPVVGWPPIRSFRKNLAGASASKL 174
           +   E K+F        S   K T+VP+ SQKRTAP PVVGWPP+RSFRKNLA  S+SKL
Sbjct: 66  KKETEDKSFHCFNGNHFSPSNKTTSVPHISQKRTAPGPVVGWPPVRSFRKNLASTSSSKL 125

Query: 175 PASESPNDVPSKTVDEKPAHEPGRKNPFVKINMDGVPIGRKVDLNAYDSYEKLSAAVDEL 234
               S     +K+ D +   E  ++  FVKINMDGVPIGRKVDLNAY+SYE+LS  VD+L
Sbjct: 126 GNESSHGGQINKSDDGEKQVETKKEGMFVKINMDGVPIGRKVDLNAYNSYEQLSFVVDKL 185

Query: 235 FRGLLAAQRDSSAGGIVNKQEEEKAITGVLDGSGEYTLVYEDNEGDRMLVGDVPWHMFVS 294
           FRGLLAAQRD S G     Q EEK I G+LDG GE+TL YEDNEGD+MLVGDVPW MFVS
Sbjct: 186 FRGLLAAQRDISDG-----QGEEKPIIGLLDGKGEFTLTYEDNEGDKMLVGDVPWQMFVS 240

Query: 295 TVTRLRVLKSSEV-SALSREKFGNSRQDKIL 324
           +V RLRV+KSSE+ SAL+   FG S+Q+K++
Sbjct: 241 SVKRLRVIKSSEISSALT---FGCSKQEKMM 268

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.
Arabidopsis thaliana (taxid: 3702)

>sp|O24408|IAA18_ARATH Auxin-responsive protein IAA18 OS=Arabidopsis thaliana GN=IAA18 PE=1 SV=2

 Score =  239 bits (610), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 157/331 (47%), Positives = 189/331 (57%), Gaps = 74/331 (22%)

Query: 1   MEGCSKTGEQACPQLLDLMA-KERREWRVMRDGEASSSEEKKLELRLGPPGGEDKRWSLK 59
           MEG S+ GE   P+LLDLM  +ERR W          +EEKKLEL+LGPPG ED   S+ 
Sbjct: 1   MEGYSRNGE-ISPKLLDLMIPQERRNWFHDEKNSVFKTEEKKLELKLGPPGEEDDDESMI 59

Query: 60  DSTNRERDDHHHQYLLSLG--YFSSTNNSNNNGFSFLHHHSSRSLPVMAKESSQPCCTKV 117
               +E  D   + +LSL   YFS                              P  TK 
Sbjct: 60  RHMKKEPKD---KSILSLAGKYFS------------------------------PSSTKT 86

Query: 118 ADLQSPAEKKAFLSSAPAKNTAVPNSSQKRTAPAPVVGWPPIRSFRKNLAGASASKLPA- 176
                                    +S KRTAP PVVGWPP+RSFRKNLA  S+SKL   
Sbjct: 87  -------------------------TSHKRTAPGPVVGWPPVRSFRKNLASGSSSKLGND 121

Query: 177 SESPNDVPSKTVDEKPA---HEPGRKNP-FVKINMDGVPIGRKVDLNAYDSYEKLSAAVD 232
           S + N V  K      A    EP R+   FVKINM GVPIGRKVDL+A++SYE+LS  VD
Sbjct: 122 STTSNGVTLKNQKCDAAAKTTEPKRQGGMFVKINMYGVPIGRKVDLSAHNSYEQLSFTVD 181

Query: 233 ELFRGLLAAQRDSSAGGIVNKQEEEKAITGVLDGSGEYTLVYEDNEGDRMLVGDVPWHMF 292
           +LFRGLLAAQRD       +  E+EK ITG+LDG+GEYTL YEDNEGD+MLVGDVPW MF
Sbjct: 182 KLFRGLLAAQRD-----FPSSIEDEKPITGLLDGNGEYTLTYEDNEGDKMLVGDVPWQMF 236

Query: 293 VSTVTRLRVLKSSEVSALSREKFGNSRQDKI 323
           VS+V RLRV+K+SE+S  S   +GN +Q+K+
Sbjct: 237 VSSVKRLRVIKTSEIS--SALTYGNGKQEKM 265

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.

Arabidopsis thaliana (taxid: 3702)

>sp|Q5W670|IAA18_ORYSJ Auxin-responsive protein IAA18 OS=Oryza sativa subsp. japonica GN=IAA18 PE=2 SV=1

 Score =  204 bits (520), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 133/318 (41%), Positives = 177/318 (55%), Gaps = 36/318 (11%)

Query: 13  PQLLDLMAKERREWRVMR-DGEAS------SSEEKKLELRLGPPGGEDKRWSLKDSTNRE 65
           P LL L+  + REW+V   DGE S      + E+K+LEL+LG PG + +  +       +
Sbjct: 12  PTLLHLIP-DGREWKVKEADGEGSRNTNLDADEDKELELKLGLPGVQQEERAADSREKIQ 70

Query: 66  RDDHHHQYLLSLGYFSS---------TNNSNNNGFSFL------HHHSSRSLPVMAKESS 110
           +         S+G F +         T  +    F+ +      ++ S R      KE +
Sbjct: 71  QQQRESSSEPSIGCFPTHSKPTTSIGTTGAKRGFFAIVGATLEGYNQSHRDTEECGKELT 130

Query: 111 QPCCTKVADLQSPAE-KKAFLSSAPAKNTAVPNSSQKRTAPAPVVGWPPIRSFRKNLAGA 169
                 + D     E KK    S P    A  ++ Q R A  PVVGWPPIRSFR+NL   
Sbjct: 131 ------LGDENMAGERKKGCCPSPPCSAAAHSSNPQGRGAIPPVVGWPPIRSFRRNLTNG 184

Query: 170 SASKLPASESPNDVPSKTVDEKPAHEPGRKNPFVKINMDGVPIGRKVDLNAYDSYEKLSA 229
           S+ K  + E  ND      D+K A    +K P VKINMDG+PIGRKVDL  YDSY+KLS+
Sbjct: 185 SSFKQ-SPERQND----EADDK-AKPICKKRPLVKINMDGIPIGRKVDLQIYDSYQKLSS 238

Query: 230 AVDELFRGLLAAQRDSSAGGIVNKQEEEKAITGVLDGSGEYTLVYEDNEGDRMLVGDVPW 289
           AV+ELFRG L AQ+D S      +  E+K  +G+LDG+G YTLVYEDN+GDRML GD+PW
Sbjct: 239 AVEELFRGFLEAQKDLSCAESGEQGAEDKIFSGLLDGTGVYTLVYEDNDGDRMLAGDIPW 298

Query: 290 HMFVSTVTRLRVLKSSEV 307
            +FVSTV RLRV++ SE+
Sbjct: 299 KVFVSTVKRLRVMRRSEL 316

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q6H543|IAA7_ORYSJ Auxin-responsive protein IAA7 OS=Oryza sativa subsp. japonica GN=IAA7 PE=2 SV=1

 Score =  204 bits (520), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 97/165 (58%), Positives = 125/165 (75%), Gaps = 9/165 (5%)

Query: 145 QKRTAPAPVVGWPPIRSFRKNLAGASASKLPASESPNDVPSKTVDEKPAHEPGRKNPFVK 204
           Q R+   PVVGWPP+R+FR+NLA +S + L          ++ +         ++ PF+K
Sbjct: 131 QTRSPSTPVVGWPPVRTFRRNLATSSKASLELQNGKKAAKAEEI---------KRAPFIK 181

Query: 205 INMDGVPIGRKVDLNAYDSYEKLSAAVDELFRGLLAAQRDSSAGGIVNKQEEEKAITGVL 264
           INMDGVPIGRK+DLNA+DSYEKLS AVD+LFRGLLAAQRD    G  + Q+E+ AI+G+L
Sbjct: 182 INMDGVPIGRKIDLNAFDSYEKLSLAVDKLFRGLLAAQRDPLTAGAKDCQQEDVAISGLL 241

Query: 265 DGSGEYTLVYEDNEGDRMLVGDVPWHMFVSTVTRLRVLKSSEVSA 309
           DG+GEYTLVYED EGD++LVGDVPW MFVS+V RLRVLK+S++S+
Sbjct: 242 DGTGEYTLVYEDYEGDKVLVGDVPWGMFVSSVKRLRVLKTSDLSS 286

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q8LQ74|IAA6_ORYSJ Auxin-responsive protein IAA6 OS=Oryza sativa subsp. japonica GN=IAA6 PE=2 SV=1

 Score =  196 bits (498), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 136/340 (40%), Positives = 188/340 (55%), Gaps = 47/340 (13%)

Query: 1   MEGCSKTGEQACPQLLDLMAKERREWRVM--------RDGEASSSEEKKLELRLGPPG-- 50
           ME  S   E   PQLLDL+  E+ EW++         R+      E+KKL+L+LG PG  
Sbjct: 1   MEEGSNKREGLPPQLLDLIPDEK-EWKLREALGLGRSRNAGFDGEEDKKLDLKLGLPGFI 59

Query: 51  GEDKRWSLKDSTNRERDDHHHQYLLSLGYF---------SSTNNSNNNGFSFLHHHSSRS 101
            +D+  +L+D   ++         LSL +F         ++T      GF       +  
Sbjct: 60  EDDEAETLRDYRLQQESPS-----LSLSFFPKHSKTTSSTTTTTGAKRGFIDTVEDKTEG 114

Query: 102 LPVMAKESSQPCCTKVAD---LQSPAEKKAFLSSAPAKNTAVPN-------SSQKRTAPA 151
                +++   C  ++A    + + +E+K      P      P         +Q R A A
Sbjct: 115 YNDQKQQARAGCGKELAVEEMIAAVSERKKGCCPPPPPPHGAPATPARNRPQTQGRGAAA 174

Query: 152 PVVGWPPIRSFRKNLAGASASKL---PASESPNDVPSKTVDEKPAHEPGRKNPFVKINMD 208
           PVVGWPPIRSFR+NLA +S+SK    P +++ N   + T          +KNP VKINMD
Sbjct: 175 PVVGWPPIRSFRRNLASSSSSKHSPEPQNDNANAKVTLTC---------KKNPLVKINMD 225

Query: 209 GVPIGRKVDLNAYDSYEKLSAAVDELFRGLLAAQRDSSAGGIVNKQEEEKAITGVLDGSG 268
           G+PIGRK+DL AY+SY+ LS+AV +LF G L AQ+D +   I  +  ++K    +LDGSG
Sbjct: 226 GIPIGRKIDLAAYNSYDGLSSAVKQLFHGFLQAQKDQTNAQIAQQGADDKIFYQLLDGSG 285

Query: 269 EYTLVYEDNEGDRMLVGDVPWHMFVSTVTRLRVLKSSEVS 308
           EYTLVYED+EGDRMLVGDVPW +FVST  RLRVL+SSE+S
Sbjct: 286 EYTLVYEDSEGDRMLVGDVPWKVFVSTAKRLRVLRSSELS 325

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|P0C127|IAA16_ORYSJ Auxin-responsive protein IAA16 OS=Oryza sativa subsp. japonica GN=IAA16 PE=2 SV=1

 Score =  176 bits (446), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 101/188 (53%), Positives = 126/188 (67%), Gaps = 17/188 (9%)

Query: 131 SSAPAKNTAVPNSSQKRTAPA-PVVGWPPIRSFRKNLAGASASKLPASESPNDVPSKTVD 189
           +++ A + A  N   K + PA PVVGWPP+RSFR+NLA +S+S  P        P    D
Sbjct: 35  NTSTAADGAKGNDGFKASRPAAPVVGWPPVRSFRRNLASSSSSSKP--------PRGGRD 86

Query: 190 EKPAHEPGRKNPFVKINMDGVPIGRKVDLNAYDSYEKLSAAVDELFRGLLAAQRDSSAGG 249
              A   G+   FVK+NMDGVPIGRKVDL A+  Y +LSAAVD LFRGLLAAQRD +   
Sbjct: 87  AAAAATGGKVARFVKVNMDGVPIGRKVDLAAHGGYGELSAAVDRLFRGLLAAQRDPTMAT 146

Query: 250 IVNKQE-------EEKAITGVLD-GSGEYTLVYEDNEGDRMLVGDVPWHMFVSTVTRLRV 301
                        EE+AI G+LD GSGEYTLVYED+EGD+MLVGDVPW+MF++   RLRV
Sbjct: 147 AAAAAAAGESCTGEEEAIAGLLDGGSGEYTLVYEDDEGDQMLVGDVPWNMFIAAARRLRV 206

Query: 302 LKSSEVSA 309
           L+SS+++A
Sbjct: 207 LRSSDLNA 214

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9LG86|IAA2_ORYSJ Auxin-responsive protein IAA2 OS=Oryza sativa subsp. japonica GN=IAA2 PE=2 SV=1

 Score =  153 bits (387), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 89/165 (53%), Positives = 109/165 (66%), Gaps = 6/165 (3%)

Query: 156 WPPIRSFRKNLAGASASKLPASESPNDVPSKTVDEKPAHEPGRKNPFVKINMDGVPIGRK 215
           WPP+RSFR+NLA +S+S    +  P     +  D+        K  FVKINMDGVPIGRK
Sbjct: 74  WPPVRSFRRNLASSSSSSSKQAPPPPSSSPQNGDKASKDGGAEKGMFVKINMDGVPIGRK 133

Query: 216 VDLNAYDSYEKLSAAVDELFRGLLAAQRDSSAGGIVNKQEEEKAITGVLDGSGEYTLVYE 275
           VDL AY  Y +LSAAVD+LFRGLLAAQ  ++        E + A  G + G GEYTLVYE
Sbjct: 134 VDLAAYGGYAQLSAAVDKLFRGLLAAQSAAA------DGEADAAAAGEMVGGGEYTLVYE 187

Query: 276 DNEGDRMLVGDVPWHMFVSTVTRLRVLKSSEVSALSREKFGNSRQ 320
           D+EGDRMLVGDVPW MF++T  RLRVLKSS++   S  +   SR+
Sbjct: 188 DDEGDRMLVGDVPWQMFIATAKRLRVLKSSDLPPPSLMRAAGSRK 232

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9XFM0|IAA28_ARATH Auxin-responsive protein IAA28 OS=Arabidopsis thaliana GN=IAA28 PE=1 SV=1

 Score =  130 bits (326), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 78/173 (45%), Positives = 100/173 (57%), Gaps = 39/173 (22%)

Query: 144 SQKRTAPAPVVGWPPIRSFRKNLAGASASKLPASESPNDVPSKTVDEKPAHEPGRKNPFV 203
           S  R   APVVGWPP+RS R+NL      ++   ES                   K  +V
Sbjct: 40  SNNRVEVAPVVGWPPVRSSRRNLTAQLKEEMKKKESD----------------EEKELYV 83

Query: 204 KINMDGVPIGRKVDLNAYDSYEKLSAAVDELFRGLLAAQRDSSAGGIVNKQEEEKAITGV 263
           KINM+GVPIGRKV+L+AY++Y++LS AVD+LF     +++DS                  
Sbjct: 84  KINMEGVPIGRKVNLSAYNNYQQLSHAVDQLF-----SKKDS------------------ 120

Query: 264 LDGSGEYTLVYEDNEGDRMLVGDVPWHMFVSTVTRLRVLKSSEVSALSREKFG 316
            D + +YTLVYED EGD++LVGDVPW MFVSTV RL VLK+S   +LS  K G
Sbjct: 121 WDLNRQYTLVYEDTEGDKVLVGDVPWEMFVSTVKRLHVLKTSHAFSLSPRKHG 173

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.

Arabidopsis thaliana (taxid: 3702)

>sp|Q38829|IAA11_ARATH Auxin-responsive protein IAA11 OS=Arabidopsis thaliana GN=IAA11 PE=1 SV=1

 Score =  129 bits (325), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 73/171 (42%), Positives = 100/171 (58%), Gaps = 13/171 (7%)

Query: 146 KRTAPA------PVVGWPPIRSFRKNLAGASASKLPASESPNDVPSKTVDEKPAHEPGRK 199
           KRTA +       VVGWPPIR++R N +  + +K  A+E PN   S+ V++  +     +
Sbjct: 76  KRTADSMAATSGQVVGWPPIRTYRMN-SMVNQAKASATEDPNLEISQAVNKNRSDSTKMR 134

Query: 200 NP-FVKINMDGVPIGRKVDLNAYDSYEKLSAAVDELFRGLLAAQRDSSAGGIVNKQEEEK 258
           N  FVK+ MDG+PIGRK+DLNA+  YE LS  ++E+F       R     G       E 
Sbjct: 135 NSMFVKVTMDGIPIGRKIDLNAHKCYESLSNTLEEMFLKPKLGSRTLETDG-----HMET 189

Query: 259 AITGVLDGSGEYTLVYEDNEGDRMLVGDVPWHMFVSTVTRLRVLKSSEVSA 309
            +  + DGS    L YED EGD MLVGDVPW MF+ +V RLR++K+SE + 
Sbjct: 190 PVKILPDGSSGLVLTYEDKEGDWMLVGDVPWGMFIGSVRRLRIMKTSEATG 240

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZSY8|IAA27_ARATH Auxin-responsive protein IAA27 OS=Arabidopsis thaliana GN=IAA27 PE=1 SV=1

 Score =  129 bits (324), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 75/179 (41%), Positives = 105/179 (58%), Gaps = 15/179 (8%)

Query: 139 AVPNSSQKRTAPAP-----VVGWPPIRSFRKNLAGASASKLPASESPND-VPSKTVDEKP 192
           AVP   +K +A AP     VVGWPPIRSFRKN   +S S+ P + S  +   +K+  E+P
Sbjct: 125 AVPVKEKKSSATAPASKAQVVGWPPIRSFRKNSMASSQSQKPGNNSETEEAEAKSGPEQP 184

Query: 193 AHEPGRKNPFVKINMDGVPIGRKVDLNAYDSYEKLSAAVDELFRGLLAAQRDSSAGGIVN 252
                    +VK++M+G P  RK+DL  Y SY +LS+A++++F      Q   S GG   
Sbjct: 185 CL-------YVKVSMEGAPYLRKIDLKTYKSYLELSSALEKMFSCFTIGQF-GSHGGCGR 236

Query: 253 KQEEEKAITGVLDGSGEYTLVYEDNEGDRMLVGDVPWHMFVSTVTRLRVLKSSEVSALS 311
               E  +T +L GS EY + YED + D MLVGDVPW MF+ +  +LR++KSSE   L+
Sbjct: 237 DGLNESRLTDLLRGS-EYVVTYEDKDSDWMLVGDVPWEMFICSCKKLRIMKSSEAIGLA 294

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	325
224070983	338	predicted protein [Populus trichocarpa]	0.938	0.902	0.632	1e-104
297743183	364	unnamed protein product [Vitis vinifera]	0.941	0.840	0.662	1e-103
255549816	320	Auxin-responsive protein IAA6, putative	0.92	0.934	0.682	1e-103
359482888	364	PREDICTED: auxin-responsive protein IAA2	0.941	0.840	0.602	1e-102
302398571	325	ARF domain class transcription factor [M	0.913	0.913	0.640	5e-98
356556539	320	PREDICTED: auxin-responsive protein IAA2	0.904	0.918	0.613	1e-89
147798046	559	hypothetical protein VITISV_004904 [Viti	0.88	0.511	0.540	6e-89
356550493	346	PREDICTED: auxin-responsive protein IAA2	0.916	0.861	0.582	5e-86
449466107	326	PREDICTED: auxin-responsive protein IAA2	0.929	0.926	0.585	4e-85
365818553	287	IAA26 [Solanum lycopersicum]	0.821	0.930	0.600	7e-79

>gi|224070983|ref|XP_002303315.1| predicted protein [Populus trichocarpa] gi|222840747|gb|EEE78294.1| predicted protein [Populus trichocarpa]

 Score =  383 bits (983), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 224/354 (63%), Positives = 248/354 (70%), Gaps = 49/354 (13%)

Query: 1   MEGCSKTGEQACPQLLDLMAKERREWRVMRDGEASSSEEKKLELRLGPPGGEDKRWSLKD 60
           MEGCSK  E ACPQLLDL+ KER EW    + E SSSE++KLELRLGPPG ED  WSLK 
Sbjct: 1   MEGCSKNVE-ACPQLLDLIPKER-EWLGKGEDERSSSEDRKLELRLGPPG-ED--WSLKS 55

Query: 61  STNRERDDHHHQYLLSLGYFSSTN-----------------NSNNNGF---SFLHHHSS- 99
           ++NRER + H   LLS GYF++ N                 N    G    S+L+  SS 
Sbjct: 56  TSNRERRERHKSQLLSFGYFTNGNQQTHKFPSSAENSHVWFNKKQQGKVPPSYLNFPSSS 115

Query: 100 ---------RSLPVMAKESSQPCCTKVA-DLQSPAEKKAFLSSAPAKNTAVPNSSQKRTA 149
                    +SLPVM KESSQPCCTKV  +L   AEKKAF + APA NTAVPNSSQKR A
Sbjct: 116 TPPTATATQQSLPVMDKESSQPCCTKVVVELPQCAEKKAFSTPAPA-NTAVPNSSQKRIA 174

Query: 150 PAPVVGWPPIRSFRKNLAGASASKLPASESPNDVPSKTVDEKPAHEPGRKNPFVKINMDG 209
           P PVVGWPPIRSFRKNLA +S S        N  P+     KPA    +K  FVKINM+G
Sbjct: 175 PGPVVGWPPIRSFRKNLATSSGS--------NSKPTFESQNKPAGT-CKKGLFVKINMEG 225

Query: 210 VPIGRKVDLNAYDSYEKLSAAVDELFRGLLAAQRDSSAGGIVNKQEEEKAITGVLDGSGE 269
           VPIGRKVDL AYDSYEKLS AVDELFRGLLAAQRDSS  GI+NKQE EKAI GVLDGSGE
Sbjct: 226 VPIGRKVDLKAYDSYEKLSTAVDELFRGLLAAQRDSSCNGIMNKQEGEKAIMGVLDGSGE 285

Query: 270 YTLVYEDNEGDRMLVGDVPWHMFVSTVTRLRVLKSSEVSALSREKFGNSRQDKI 323
           Y LVYEDNEGDRMLVGDVPWHMFVSTV RLRVLKSSEVSAL+    G+S+ +K+
Sbjct: 286 YKLVYEDNEGDRMLVGDVPWHMFVSTVKRLRVLKSSEVSALN---LGSSKHEKV 336

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297743183|emb|CBI36050.3| unnamed protein product [Vitis vinifera]

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 218/329 (66%), Positives = 247/329 (75%), Gaps = 23/329 (6%)

Query: 1   MEGCSKTGEQACPQLLDLMAKERREWRVMRDGEA---SSSEEKKLELRLGPPGGEDKRWS 57
           MEGCS+  E  CPQLLDL++K+R EW V++ GE     S EEKKLELRLGPPG ED  W+
Sbjct: 44  MEGCSRKDE-VCPQLLDLISKDR-EW-VLKSGEGRSHGSPEEKKLELRLGPPG-ED--WT 97

Query: 58  LKDSTN----RERDDHHHQYLLSLGYFSSTNNSNNNGFSFLHHHSSRSLPVMAKESSQPC 113
           +KD+TN    RERD+             +         SFL   SS   PV+ KESSQPC
Sbjct: 98  IKDNTNNNNYRERDESLRNTGEEGYQVKTQQQQQQTKASFLQFQSSP--PVITKESSQPC 155

Query: 114 CTKVADLQSPAEKKAFLSSAPAKNTAVPNSSQKRTAPAPVVGWPPIRSFRKNLAGASASK 173
           CTKV DLQ+  EKKAF  S  + NTAVPNSSQKR+AP  VVGWPPIRSFRKNLA +S+SK
Sbjct: 156 CTKVVDLQN-TEKKAF--SPASANTAVPNSSQKRSAPTAVVGWPPIRSFRKNLASSSSSK 212

Query: 174 LPASESPNDVPSKTVDEKPAHEPGRKNPFVKINMDGVPIGRKVDLNAYDSYEKLSAAVDE 233
            PA+ES + VP+K   EKP  E G+K  FVKINMDGVPIGRKVDL AYDSYEKLS+AVDE
Sbjct: 213 -PANESQDVVPNKIASEKPV-EVGKKGLFVKINMDGVPIGRKVDLTAYDSYEKLSSAVDE 270

Query: 234 LFRGLLAAQRDSSAGGIVNKQEEEKAITGVLDGSGEYTLVYEDNEGDRMLVGDVPWHMFV 293
           LFRGLLAAQRDSSAGGI  K EEEK ITG+LDGSGEYTLVYEDNEGDR+LVGDVPWHMFV
Sbjct: 271 LFRGLLAAQRDSSAGGIQTKHEEEKTITGLLDGSGEYTLVYEDNEGDRVLVGDVPWHMFV 330

Query: 294 STVTRLRVLKSSEVSALSREKFGNSRQDK 322
           +TV RLRVLKSSE+SAL     G+S+Q+K
Sbjct: 331 NTVKRLRVLKSSELSALC---LGSSKQEK 356

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255549816|ref|XP_002515959.1| Auxin-responsive protein IAA6, putative [Ricinus communis] gi|223544864|gb|EEF46379.1| Auxin-responsive protein IAA6, putative [Ricinus communis]

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 228/334 (68%), Positives = 245/334 (73%), Gaps = 35/334 (10%)

Query: 1   MEGCSKTGEQACPQLLDLMAKERREWRVMRDGEASSSEE-KKLELRLGPPGGEDKRWSLK 59
           MEGCSK  E  CPQLLDL+ +ER EW V R  E SSSEE KKLELRL PPG E   WSL 
Sbjct: 1   MEGCSKNSE-TCPQLLDLIPRER-EWLVKRTDEKSSSEEIKKLELRLAPPGQE---WSLN 55

Query: 60  DST-----NRERDDHHHQYLLSLG---YFSST-----NNSNNNGFSFLHHHS------SR 100
           DST     NRERD+     LLSLG   +F+         +     SFL   S      ++
Sbjct: 56  DSTKNADINRERDES----LLSLGASGWFNQQLSQQGKATTTTTPSFLQFPSKTVTTNAQ 111

Query: 101 SLPVMAKESSQPCCTKVA-DLQSPAEKKAFLSSAPAKNTAVPNSSQKRTAPAPVVGWPPI 159
           +LPVMAKESSQPCCTKV  DLQ  AEKKAF   APA NTAVPN SQKRTAP PVVGWPPI
Sbjct: 112 NLPVMAKESSQPCCTKVVVDLQQSAEKKAFSQPAPA-NTAVPNISQKRTAPGPVVGWPPI 170

Query: 160 RSFRKNLAGASASKLPASESPNDVPSKTVDEKPAHEPGRKNPFVKINMDGVPIGRKVDLN 219
           RSFRKNLA +++SK  A    N+ P+K V  +   E  +K  FVKINMDGVPIGRKVDL 
Sbjct: 171 RSFRKNLASSNSSKSAADSQ-NESPNKKVASENPVETCKKGLFVKINMDGVPIGRKVDLQ 229

Query: 220 AYDSYEKLSAAVDELFRGLLAAQRDSSAGGIVNKQEEEKAITGVLDGSGEYTLVYEDNEG 279
           AYDSYEKLS AVDELFRGLLAAQRDSSAG    KQEEEKAITGVLDGSGEYTLVYEDNEG
Sbjct: 230 AYDSYEKLSIAVDELFRGLLAAQRDSSAG---TKQEEEKAITGVLDGSGEYTLVYEDNEG 286

Query: 280 DRMLVGDVPWHMFVSTVTRLRVLKSSEVSALSRE 313
           DRMLVGDVPWHMFVSTV RLRVLKSSEVSALSR+
Sbjct: 287 DRMLVGDVPWHMFVSTVKRLRVLKSSEVSALSRK 320

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359482888|ref|XP_002283588.2| PREDICTED: auxin-responsive protein IAA26-like [Vitis vinifera]

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 224/372 (60%), Positives = 259/372 (69%), Gaps = 66/372 (17%)

Query: 1   MEGCSKTGEQACPQLLDLMAKERREWRVMRDGEA---SSSEEKKLELRLGPPGGEDKRWS 57
           MEGCS+  E  CPQLLDL++K+R EW V++ GE     S EEKKLELRLGPPG ED  W+
Sbjct: 1   MEGCSRKDE-VCPQLLDLISKDR-EW-VLKSGEGRSHGSPEEKKLELRLGPPG-ED--WT 54

Query: 58  LKDSTN----RERDD--HHHQYLLSL---------------------------GYFSSTN 84
           +KD+TN    RERD+   + +YL S+                           G+  +  
Sbjct: 55  IKDNTNNNNYRERDESLRYLRYLSSMASMTHNCSNNNNNSNIINNTTTSCGKRGFLETVE 114

Query: 85  -NSNNNGF-------------SFLHHHSSRSLPVMAKESSQPCCTKVADLQSPAEKKAFL 130
            N+   G+             SFL   SS   PV+ KESSQPCCTKV DLQ+  EKKAF 
Sbjct: 115 RNTGEEGYQVKTQQQQQQTKASFLQFQSSP--PVITKESSQPCCTKVVDLQN-TEKKAF- 170

Query: 131 SSAPAKNTAVPNSSQKRTAPAPVVGWPPIRSFRKNLAGASASKLPASESPNDVPSKTVDE 190
            S  + NTAVPNSSQKR+AP  VVGWPPIRSFRKNLA +S+SK PA+ES + VP+K   E
Sbjct: 171 -SPASANTAVPNSSQKRSAPTAVVGWPPIRSFRKNLASSSSSK-PANESQDVVPNKIASE 228

Query: 191 KPAHEPGRKNPFVKINMDGVPIGRKVDLNAYDSYEKLSAAVDELFRGLLAAQRDSSAGGI 250
           KP  E G+K  FVKINMDGVPIGRKVDL AYDSYEKLS+AVDELFRGLLAAQRDSSAGGI
Sbjct: 229 KPV-EVGKKGLFVKINMDGVPIGRKVDLTAYDSYEKLSSAVDELFRGLLAAQRDSSAGGI 287

Query: 251 VNKQEEEKAITGVLDGSGEYTLVYEDNEGDRMLVGDVPWHMFVSTVTRLRVLKSSEVSAL 310
             K EEEK ITG+LDGSGEYTLVYEDNEGDR+LVGDVPWHMFV+TV RLRVLKSSE+SAL
Sbjct: 288 QTKHEEEKTITGLLDGSGEYTLVYEDNEGDRVLVGDVPWHMFVNTVKRLRVLKSSELSAL 347

Query: 311 SREKFGNSRQDK 322
                G+S+Q+K
Sbjct: 348 C---LGSSKQEK 356

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302398571|gb|ADL36580.1| ARF domain class transcription factor [Malus x domestica]

 Score =  363 bits (932), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 207/323 (64%), Positives = 235/323 (72%), Gaps = 26/323 (8%)

Query: 1   MEGCSKTGEQACPQLLDLMAKERREWRVMRDGE------ASSSEEKKLELRLGPPGGEDK 54
           MEGC++  ++ACPQLLDL+ +ER +W V R  E      +SSSEEKKLELRLGPPG +  
Sbjct: 5   MEGCTRKEKEACPQLLDLIPRER-DWLVSRYIERSSGHGSSSSEEKKLELRLGPPGQD-- 61

Query: 55  RWSLKDSTNRERDDHHHQYLLSLGYFSSTNNSNNNGFSFLHHHSSRS-------LPVMAK 107
            WS+K    RERD+   Q L+SLGYFSS  +SN     F+  +  ++       LPV   
Sbjct: 62  -WSMK----RERDEKS-QSLVSLGYFSSPMSSNQTQ-KFISSYQQQTKVASFLHLPVTPN 114

Query: 108 ESSQPCCTKVADLQSPAEKKAFLSSAPAKNTAVPNSSQKRTAPAPVVGWPPIRSFRKNLA 167
           ++SQP CTK  DLQ+ AE K F S APA    +PN+SQKRTAPAPVVGWPPIRSFRKNLA
Sbjct: 115 KASQPWCTKAVDLQN-AENKGF-SPAPANTAVLPNTSQKRTAPAPVVGWPPIRSFRKNLA 172

Query: 168 GASASKLPASESPNDVPSKTVDEKPAHEPGRKNPFVKINMDGVPIGRKVDLNAYDSYEKL 227
               S  PA ES N V  K  + K     G K  FVKINMDGVPIGRKVDL AYDSY+KL
Sbjct: 173 SKKGSSKPAVESENVVQIKDPNGKSVETSG-KGLFVKINMDGVPIGRKVDLGAYDSYQKL 231

Query: 228 SAAVDELFRGLLAAQRDSSAGGIVNKQEEEKAITGVLDGSGEYTLVYEDNEGDRMLVGDV 287
           S+AVDELFRGLLAAQR+S  GG  NKQEEEK ITG+LDGSGEYTLVYEDNEGDRMLVGDV
Sbjct: 232 SSAVDELFRGLLAAQRESCNGGTKNKQEEEKEITGLLDGSGEYTLVYEDNEGDRMLVGDV 291

Query: 288 PWHMFVSTVTRLRVLKSSEVSAL 310
           PWHMFVSTV RLRVLKSSE+SAL
Sbjct: 292 PWHMFVSTVKRLRVLKSSELSAL 314

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356556539|ref|XP_003546582.1| PREDICTED: auxin-responsive protein IAA26-like [Glycine max]

 Score =  335 bits (860), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 200/326 (61%), Positives = 231/326 (70%), Gaps = 32/326 (9%)

Query: 10  QACPQLLDLMAKERREWRVMRDGEASSSEEKKLELRLGPPGGEDKRWSLKDST-NRERDD 68
           +A PQLLDL++ ER EW++ +  E  SSEE+KLELRLGPPG ED  WSL     N ER++
Sbjct: 8   EASPQLLDLISNER-EWQMNKRNEGKSSEERKLELRLGPPG-ED--WSLGGKMKNTEREE 63

Query: 69  HHHQYLLSLGYFSSTNNSNNNGF--------SFLHHHSSRSLPVMAKESSQPCCTKVADL 120
                LLSLG FS      NNGF        ++ HHH   +    +    Q C   V +L
Sbjct: 64  S----LLSLGCFSP-----NNGFQSKASPWPNYHHHHQGNNNKASSSSFLQ-CPKVVVEL 113

Query: 121 QSPAEKKAFLSSAPAKNTAV--PNSSQKRTAPAPVVGWPPIRSFRKNLAGASASKLPASE 178
           Q+  + K F  S  + NTAV  PN+SQKRTAPAPVVGWPPIRSFRKNLA +S++  P  E
Sbjct: 114 QNGGDGKVF--SPSSANTAVSQPNTSQKRTAPAPVVGWPPIRSFRKNLASSSSASKPPPE 171

Query: 179 SPNDVPSKTVDEKPA-HEPGRKNPFVKINMDGVPIGRKVDLNAYDSYEKLSAAVDELFRG 237
           S  +  +K   +KP  +    K  FVKINMDGVPIGRKVDLNAYDSYE LS+AVDELFRG
Sbjct: 172 SQAEQHNKVAGKKPVDNYANNKGLFVKINMDGVPIGRKVDLNAYDSYENLSSAVDELFRG 231

Query: 238 LLAAQRDSSAGGIVNKQEEEKAITGVLDGSGEYTLVYEDNEGDRMLVGDVPWHMFVSTVT 297
           LLAAQRDSSAGG+ NKQEEEKAITG+LDGSGEYTLVYEDNEGDRMLVGDVPWHMFVSTV 
Sbjct: 232 LLAAQRDSSAGGVHNKQEEEKAITGLLDGSGEYTLVYEDNEGDRMLVGDVPWHMFVSTVK 291

Query: 298 RLRVLKSSEVSALSREKFGNSRQDKI 323
           RLRVLKSSE+SA +      S+QDKI
Sbjct: 292 RLRVLKSSELSAFTL----GSKQDKI 313

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147798046|emb|CAN73899.1| hypothetical protein VITISV_004904 [Vitis vinifera]

 Score =  333 bits (855), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 215/398 (54%), Positives = 245/398 (61%), Gaps = 112/398 (28%)

Query: 1   MEGCSKTGEQACPQLLDLMAKERREWRVMRDGEA---SSSEEKKLELRLGPPGGEDKRWS 57
           MEGCS+  E  CPQLLDL++K+R EW V++ GE     S EEKKLELRLGPPG ED  W+
Sbjct: 136 MEGCSRKDE-VCPQLLDLISKDR-EW-VLKSGEGRSHGSPEEKKLELRLGPPG-ED--WT 189

Query: 58  LKDSTN----RERDD--HHHQYLLSL----------------------------GYFSST 83
           +KD+TN    RERD+   + +YL S+                            G+  + 
Sbjct: 190 IKDNTNNNNCRERDESLRYLRYLSSMASMTHNCSNNNNNNSNIINNTTTSCGKRGFLETV 249

Query: 84  -----------------------NNSNNNGF-----------------------SFLHHH 97
                                  NN+NNNG                        SFL   
Sbjct: 250 ERNTGEEGWIMNSNGNQNQKQAANNTNNNGVLPSPWSSSGYQVKTQQQQQQTKASFLQFQ 309

Query: 98  SSRSLPVMAKESSQPCCTKVADLQSPAEKKAFLSSAPAKNTAVPNSSQKRTAPAPVVGWP 157
           SS   PV+ KESSQPCCTKV DLQ+  EKKAF  S  + NTAVPNSSQKR          
Sbjct: 310 SSP--PVITKESSQPCCTKVVDLQN-TEKKAF--SPASANTAVPNSSQKR---------- 354

Query: 158 PIRSFRKNLAGASASKLPASESPNDVPSKTVDEKPAHEPGRKNPFVKINMDGVPIGRKVD 217
                 KNLA +S+SK PA+ES + VP+K   EKP  E G+K  FVKINMDGVPIGRKVD
Sbjct: 355 ------KNLASSSSSK-PANESQDVVPNKIASEKPV-EVGKKGLFVKINMDGVPIGRKVD 406

Query: 218 LNAYDSYEKLSAAVDELFRGLLAAQRDSSAGGIVNKQEEEKAITGVLDGSGEYTLVYEDN 277
           L AYDSYEKLS+AVDELFRGLLAAQRDSSAGGI  KQEEEK ITG+LDGSGEYTLVYEDN
Sbjct: 407 LTAYDSYEKLSSAVDELFRGLLAAQRDSSAGGIQTKQEEEKTITGLLDGSGEYTLVYEDN 466

Query: 278 EGDRMLVGDVPWHMFVSTVTRLRVLKSSEVSALSREKF 315
           EGDR+LVGDVPWHMFV+TV RLRVLKSSE+SAL RE F
Sbjct: 467 EGDRVLVGDVPWHMFVNTVKRLRVLKSSELSALCREFF 504

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356550493|ref|XP_003543621.1| PREDICTED: auxin-responsive protein IAA26-like [Glycine max]

 Score =  323 bits (829), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 204/350 (58%), Positives = 234/350 (66%), Gaps = 52/350 (14%)

Query: 9   EQACPQLLDLMAKERREWRVMRDGEASSSEEKKLELRLGPPGGEDKRWSL---KDSTNRE 65
           ++A PQLLDL++ ER EW++ +  E  SSEE+KLELRLGPPG ED  WSL     + N E
Sbjct: 7   DEASPQLLDLISNER-EWQMNKRNEGKSSEERKLELRLGPPG-ED--WSLGGKMKNNNTE 62

Query: 66  RDDHHHQYLLSLGYFSSTNNSN-------------------NN----GFSFLHHHSSRSL 102
           R+D   Q LLSLG FS   NSN                   NN      SFL   SS   
Sbjct: 63  RED---QSLLSLGCFSPNINSNAFQSKASHPWPNYHHHGQGNNKKASSSSFLQFPSSTQP 119

Query: 103 PVMAKESSQPCCTKVADLQSPAEKKAFLSSAPAKNTAV--PNSSQKRTAPAPVVGWPPIR 160
            +M K++S  C   V +LQ         S + A NTAV  PN+SQKRTAPAPVVGWPPIR
Sbjct: 120 VMMGKDAS--CPKVVVELQQNGGDGKVFSPSSA-NTAVSQPNTSQKRTAPAPVVGWPPIR 176

Query: 161 SFRKNLAGASASKLP-------ASESPNDVPSKTVDEKPAHEPGRKNPFVKINMDGVPIG 213
           SFRKNL+ +S++  P       A +  N V  K   +  A+  G    FVKINMDGVPIG
Sbjct: 177 SFRKNLSSSSSASKPPPPPESQAEQQHNKVAGKKPVDNYANNKGL---FVKINMDGVPIG 233

Query: 214 RKVDLNAYDSYEKLSAAVDELFRGLLAAQRDSSAGGIVNKQEEEKAITGVLDGSGEYTLV 273
           RKVDLNAYDSYE LS+AVDELFRGLLAAQRDSSAGG+ NKQEEEKAITG+LDGSGE+TLV
Sbjct: 234 RKVDLNAYDSYENLSSAVDELFRGLLAAQRDSSAGGVHNKQEEEKAITGLLDGSGEFTLV 293

Query: 274 YEDNEGDRMLVGDVPWHMFVSTVTRLRVLKSSEVSALSREKFGNSRQDKI 323
           YEDNEGDRMLVGDVPWHMFVSTV RLRVLKSSE+SA +      S+QDKI
Sbjct: 294 YEDNEGDRMLVGDVPWHMFVSTVKRLRVLKSSELSAFTL----GSKQDKI 339

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449466107|ref|XP_004150768.1| PREDICTED: auxin-responsive protein IAA26-like [Cucumis sativus] gi|449490048|ref|XP_004158493.1| PREDICTED: auxin-responsive protein IAA26-like [Cucumis sativus]

 Score =  321 bits (822), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 199/340 (58%), Positives = 230/340 (67%), Gaps = 38/340 (11%)

Query: 1   MEGCSKTGEQACPQLLDLMAKERREWRVMRD--GEASSSEEKKLELRLGPPGGEDKRWSL 58
           M GCS+  E   PQLLDL+ K+R +W    D  G+A++S++KKLELRLG PG  D  WS 
Sbjct: 3   MNGCSEKDEDY-PQLLDLIPKDR-QWLATGDVAGKANTSDDKKLELRLGLPGEGD--WS- 57

Query: 59  KDSTNRERDDHHHQYLLSLGYFSSTNNSNNNGFSFLHHH-----------SSRSLPVMAK 107
                + RDD     + S GYF  +     +   +  H            S   L  M K
Sbjct: 58  ----GKGRDDS----VPSFGYFPVSRKFTPSENPWPPHPNFLGKLQPTKISGFCLSAMGK 109

Query: 108 ES-SQPCCTKVADLQSPAEKKAFLSSAPAKNTAVPNSSQKRTAPAPVVGWPPIRSFRKNL 166
           E  SQPCCTK+ DL + AE K F SS    N AV NSSQKRTAPAPVVGWPPIRS R+N+
Sbjct: 110 EGVSQPCCTKMGDLHN-AEAKPFPSSV---NIAVSNSSQKRTAPAPVVGWPPIRSSRRNI 165

Query: 167 AGASASKLPASESPNDVPSKTVD--EKPAHEPGRKNPFVKINMDGVPIGRKVDLNAYDSY 224
           A +S SK PASES +  PSK     EKP  + G K  FVKINMDGVPIGRK+DLNAYDSY
Sbjct: 166 ASSSFSK-PASESSDASPSKLPGPGEKPV-DVGGKGLFVKINMDGVPIGRKIDLNAYDSY 223

Query: 225 EKLSAAVDELFRGLLAAQRDSSAGGIVNKQEEEKAITGVLDGSGEYTLVYEDNEGDRMLV 284
           EKLS  VDELFRGLLAAQRDSS GG++NKQEEEK ITG+LDGSGEYTLVYEDNEGDR+LV
Sbjct: 224 EKLSFGVDELFRGLLAAQRDSSGGGVLNKQEEEKPITGLLDGSGEYTLVYEDNEGDRVLV 283

Query: 285 GDVPWHMFVSTVTRLRVLKSSEVSALSREKFGNSRQDKIL 324
           GDVPW MFVST  RLRVLKSSE+ +LS    G S+  K++
Sbjct: 284 GDVPWQMFVSTAKRLRVLKSSELPSLS---LGCSKSQKMV 320

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|365818553|gb|AEX00365.1| IAA26 [Solanum lycopersicum]

 Score =  300 bits (767), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 179/298 (60%), Positives = 215/298 (72%), Gaps = 31/298 (10%)

Query: 24  REWRVMRDGEAS--SSEEKKLELRLGPPGGEDKRWSLKDSTNRERDDHHHQYLLSLGYFS 81
           ++W + R  E +  +SEEKKLELRLGPP G+   WS       E+D+  + +     Y S
Sbjct: 6   QKWLMQRGEEINHGNSEEKKLELRLGPPNGD---WSCG-----EKDESFYPF----SYMS 53

Query: 82  ST--NNSNNNGFSFLHHHSSRSLPVMAKESSQ----PCCTKVADLQSPAEKKAFLSSAPA 135
           +T  NN +N+  +F    S   L   A++ SQ      CTK ADLQS  +KKAF  +A  
Sbjct: 54  TTKGNNRDNHAQNF---SSFLQLQSTAQKQSQRVQESVCTKTADLQSTEKKKAFSQTA-- 108

Query: 136 KNTAVPNSSQKRTAPAPVVGWPPIRSFRKNLAGASASKLPASESPNDVPSKTVDEKPAHE 195
               V NS+QKRTAPAPVVGWPPIRSFRKNLA +S+S   ASE+ N VP+K+ ++KP  E
Sbjct: 109 ---TVQNSAQKRTAPAPVVGWPPIRSFRKNLA-SSSSVKSASETQNVVPNKSANKKPM-E 163

Query: 196 PGRKNPFVKINMDGVPIGRKVDLNAYDSYEKLSAAVDELFRGLLAAQRDSSAGGIVNKQE 255
             +K  FVKINMDG+PIGRKVDL AYDSY KLS+AVD+LFRGL+AAQ DSSAGG   K+E
Sbjct: 164 ICQKGLFVKINMDGIPIGRKVDLKAYDSYHKLSSAVDQLFRGLVAAQNDSSAGGNNEKKE 223

Query: 256 -EEKAITGVLDGSGEYTLVYEDNEGDRMLVGDVPWHMFVSTVTRLRVLKSSEVSALSR 312
            EEKAI+G+LDGSGEYTLVYEDNEGDRMLVGDVPWHMFVSTV RLRVLKSSE+S L+R
Sbjct: 224 DEEKAISGLLDGSGEYTLVYEDNEGDRMLVGDVPWHMFVSTVKRLRVLKSSELSTLTR 281

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	325
TAIR|locus:2088324	269	PAP1 "phytochrome-associated p	0.624	0.754	0.587	7.7e-64
TAIR|locus:2195820	267	IAA18 "indole-3-acetic acid in	0.615	0.749	0.556	1.1e-58
UNIPROTKB|Q6H543	300	IAA7 "Auxin-responsive protein	0.550	0.596	0.560	3.3e-51
UNIPROTKB|Q8LQ74	335	IAA6 "Auxin-responsive protein	0.516	0.501	0.576	2e-49
UNIPROTKB|Q5W670	327	IAA18 "Auxin-responsive protei	0.541	0.538	0.554	1e-45
UNIPROTKB|Q9LG86	238	IAA2 "Auxin-responsive protein	0.566	0.773	0.523	2.8e-43
TAIR|locus:2180557	175	IAA28 "AT5G25890" [Arabidopsis	0.233	0.434	0.478	2.9e-31
TAIR|locus:2051154	247	IAA13 "auxin-induced protein 1	0.578	0.761	0.412	6.2e-30
TAIR|locus:2139890	302	IAA11 "indole-3-acetic acid in	0.581	0.625	0.387	1.6e-29
TAIR|locus:2119976	305	PAP2 "AT4G29080" [Arabidopsis	0.504	0.537	0.418	1.2e-28

TAIR|locus:2088324 PAP1 "phytochrome-associated protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 588 (212.0 bits), Expect = 7.7e-64, Sum P(2) = 7.7e-64
 Identities = 127/216 (58%), Positives = 157/216 (72%)

Query:   115 TKVADLQSPAEKKAFLSS-----APA-KNTAVPNSSQKRTAPAPVVGWPPIRSFRKNLAG 168
             T++ +++   E K+F        +P+ K T+VP+ SQKRTAP PVVGWPP+RSFRKNLA 
Sbjct:    60 TEIRNIKKETEDKSFHCFNGNHFSPSNKTTSVPHISQKRTAPGPVVGWPPVRSFRKNLAS 119

Query:   169 ASASKLPASESPNDVPSKTVDEKPAHEPGRKNPFVKINMDGVPIGRKVDLNAYDSYEKLS 228
              S+SKL    S     +K+ D +   E  ++  FVKINMDGVPIGRKVDLNAY+SYE+LS
Sbjct:   120 TSSSKLGNESSHGGQINKSDDGEKQVETKKEGMFVKINMDGVPIGRKVDLNAYNSYEQLS 179

Query:   229 AAVDELFRGLLAAQRDSSAGGIVNKQEEEKAITGVLDGSGEYTLVYEDNEGDRMLVGDVP 288
               VD+LFRGLLAAQRD S G     Q EEK I G+LDG GE+TL YEDNEGD+MLVGDVP
Sbjct:   180 FVVDKLFRGLLAAQRDISDG-----QGEEKPIIGLLDGKGEFTLTYEDNEGDKMLVGDVP 234

Query:   289 WHMFVSTVTRLRVLKSSEVSALSREKFGNSRQDKIL 324
             W MFVS+V RLRV+KSSE+S  S   FG S+Q+K++
Sbjct:   235 WQMFVSSVKRLRVIKSSEIS--SALTFGCSKQEKMM 268

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009733 "response to auxin stimulus" evidence=TAS

GO:0006995 "cellular response to nitrogen starvation" evidence=RCA

TAIR|locus:2195820 IAA18 "indole-3-acetic acid inducible 18" [Arabidopsis thaliana (taxid:3702)]

 Score = 527 (190.6 bits), Expect = 1.1e-58, Sum P(2) = 1.1e-58
 Identities = 119/214 (55%), Positives = 149/214 (69%)

Query:   117 VADLQSPAEKKAFLSSAPA--KNTAVPNSSQKRTAPAPVVGWPPIRSFRKNLAGASASKL 174
             +  ++   + K+ LS A      ++   +S KRTAP PVVGWPP+RSFRKNLA  S+SKL
Sbjct:    59 IRHMKKEPKDKSILSLAGKYFSPSSTKTTSHKRTAPGPVVGWPPVRSFRKNLASGSSSKL 118

Query:   175 PA-SESPNDVPSKTVDEKPAH---EPGRKNP-FVKINMDGVPIGRKVDLNAYDSYEKLSA 229
                S + N V  K      A    EP R+   FVKINM GVPIGRKVDL+A++SYE+LS 
Sbjct:   119 GNDSTTSNGVTLKNQKCDAAAKTTEPKRQGGMFVKINMYGVPIGRKVDLSAHNSYEQLSF 178

Query:   230 AVDELFRGLLAAQRDSSAGGIVNKQEEEKAITGVLDGSGEYTLVYEDNEGDRMLVGDVPW 289
              VD+LFRGLLAAQRD       +  E+EK ITG+LDG+GEYTL YEDNEGD+MLVGDVPW
Sbjct:   179 TVDKLFRGLLAAQRD-----FPSSIEDEKPITGLLDGNGEYTLTYEDNEGDKMLVGDVPW 233

Query:   290 HMFVSTVTRLRVLKSSEVSALSREKFGNSRQDKI 323
              MFVS+V RLRV+K+SE+S  S   +GN +Q+K+
Sbjct:   234 QMFVSSVKRLRVIKTSEIS--SALTYGNGKQEKM 265

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009733 "response to auxin stimulus" evidence=RCA;TAS

GO:0005515 "protein binding" evidence=IPI

GO:0009694 "jasmonic acid metabolic process" evidence=RCA

GO:0009741 "response to brassinosteroid stimulus" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0048527 "lateral root development" evidence=RCA

UNIPROTKB|Q6H543 IAA7 "Auxin-responsive protein IAA7" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 511 (184.9 bits), Expect = 3.3e-51, Sum P(2) = 3.3e-51
 Identities = 107/191 (56%), Positives = 138/191 (72%)

Query:   122 SPAEKKAFLSSAPAKNTAVPNSS---QKRTAPAPVVGWPPIRSFRKNLAGASASKLPASE 178
             SP E++A    A   N    N++   Q R+   PVVGWPP+R+FR+NLA +S + L   E
Sbjct:   105 SPEEEEAHPPPATGNNALASNNNGCFQTRSPSTPVVGWPPVRTFRRNLATSSKASL---E 161

Query:   179 SPNDVPSKTVDEKPAHEPGRKNPFVKINMDGVPIGRKVDLNAYDSYEKLSAAVDELFRGL 238
               N   +   +E       ++ PF+KINMDGVPIGRK+DLNA+DSYEKLS AVD+LFRGL
Sbjct:   162 LQNGKKAAKAEEI------KRAPFIKINMDGVPIGRKIDLNAFDSYEKLSLAVDKLFRGL 215

Query:   239 LAAQRDSSAGGIVNKQEEEKAITGVLDGSGEYTLVYEDNEGDRMLVGDVPWHMFVSTVTR 298
             LAAQRD    G  + Q+E+ AI+G+LDG+GEYTLVYED EGD++LVGDVPW MFVS+V R
Sbjct:   216 LAAQRDPLTAGAKDCQQEDVAISGLLDGTGEYTLVYEDYEGDKVLVGDVPWGMFVSSVKR 275

Query:   299 LRVLKSSEVSA 309
             LRVLK+S++S+
Sbjct:   276 LRVLKTSDLSS 286

GO:0009733 "response to auxin stimulus" evidence=IC

UNIPROTKB|Q8LQ74 IAA6 "Auxin-responsive protein IAA6" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 476 (172.6 bits), Expect = 2.0e-49, Sum P(2) = 2.0e-49
 Identities = 102/177 (57%), Positives = 127/177 (71%)

Query:   132 SAPAKNTAVPNSSQKRTAPAPVVGWPPIRSFRKNLAGASASKLPASESPNDVPSKTVDEK 191
             + PA+N   P + Q R A APVVGWPPIRSFR+NLA +S+SK  + E  ND  +  V   
Sbjct:   158 ATPARNR--PQT-QGRGAAAPVVGWPPIRSFRRNLASSSSSK-HSPEPQNDNANAKVTLT 213

Query:   192 PAHEPGRKNPFVKINMDGVPIGRKVDLNAYDSYEKLSAAVDELFRGLLAAQRDSSAGGIV 251
                   +KNP VKINMDG+PIGRK+DL AY+SY+ LS+AV +LF G L AQ+D +   I 
Sbjct:   214 C-----KKNPLVKINMDGIPIGRKIDLAAYNSYDGLSSAVKQLFHGFLQAQKDQTNAQIA 268

Query:   252 NKQEEEKAITGVLDGSGEYTLVYEDNEGDRMLVGDVPWHMFVSTVTRLRVLKSSEVS 308
              +  ++K    +LDGSGEYTLVYED+EGDRMLVGDVPW +FVST  RLRVL+SSE+S
Sbjct:   269 QQGADDKIFYQLLDGSGEYTLVYEDSEGDRMLVGDVPWKVFVSTAKRLRVLRSSELS 325

GO:0006417 "regulation of translation" evidence=ISS

GO:0009733 "response to auxin stimulus" evidence=IC

UNIPROTKB|Q5W670 IAA18 "Auxin-responsive protein IAA18" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 480 (174.0 bits), Expect = 1.0e-45, P = 1.0e-45
 Identities = 101/182 (55%), Positives = 124/182 (68%)

Query:   126 KKAFLSSAPAKNTAVPNSSQKRTAPAPVVGWPPIRSFRKNLAGASASKLPASESPNDVPS 185
             KK    S P    A  ++ Q R A  PVVGWPPIRSFR+NL   S+ K  + E  ND   
Sbjct:   141 KKGCCPSPPCSAAAHSSNPQGRGAIPPVVGWPPIRSFRRNLTNGSSFK-QSPERQND--- 196

Query:   186 KTVDEKPAHEPGRKNPFVKINMDGVPIGRKVDLNAYDSYEKLSAAVDELFRGLLAAQRDS 245
                D+K A    +K P VKINMDG+PIGRKVDL  YDSY+KLS+AV+ELFRG L AQ+D 
Sbjct:   197 -EADDK-AKPICKKRPLVKINMDGIPIGRKVDLQIYDSYQKLSSAVEELFRGFLEAQKDL 254

Query:   246 SAGGIVNKQEEEKAITGVLDGSGEYTLVYEDNEGDRMLVGDVPWHMFVSTVTRLRVLKSS 305
             S      +  E+K  +G+LDG+G YTLVYEDN+GDRML GD+PW +FVSTV RLRV++ S
Sbjct:   255 SCAESGEQGAEDKIFSGLLDGTGVYTLVYEDNDGDRMLAGDIPWKVFVSTVKRLRVMRRS 314

Query:   306 EV 307
             E+
Sbjct:   315 EL 316

GO:0009733 "response to auxin stimulus" evidence=IC

UNIPROTKB|Q9LG86 IAA2 "Auxin-responsive protein IAA2" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 457 (165.9 bits), Expect = 2.8e-43, P = 2.8e-43
 Identities = 101/193 (52%), Positives = 125/193 (64%)

Query:   128 AFLSSAPAKNTAVPNSSQKRTAPAPVVGWPPIRSFRKNLAGASASKLPASESPNDVPSKT 187
             AF   +   N + P+ +    A APVVGWPP+RSFR+NLA +S+S    +  P     + 
Sbjct:    49 AFALRSNGTNASKPSGA---AAAAPVVGWPPVRSFRRNLASSSSSSSKQAPPPPSSSPQN 105

Query:   188 VDEKPAHEPGRKNPFVKINMDGVPIGRKVDLNAYDSYEKLSAAVDELFRGLLAAQRDSSA 247
              D+        K  FVKINMDGVPIGRKVDL AY  Y +LSAAVD+LFRGLLAAQ  ++A
Sbjct:   106 GDKASKDGGAEKGMFVKINMDGVPIGRKVDLAAYGGYAQLSAAVDKLFRGLLAAQ-SAAA 164

Query:   248 GGIVNKQEEEKAITGVLDGSGEYTLVYEDNEGDRMLVGDVPWHMFVSTVTRLRVLKSSEV 307
              G     E + A  G + G GEYTLVYED+EGDRMLVGDVPW MF++T  RLRVLKSS++
Sbjct:   165 DG-----EADAAAAGEMVGGGEYTLVYEDDEGDRMLVGDVPWQMFIATAKRLRVLKSSDL 219

Query:   308 SALSREKFGNSRQ 320
                S  +   SR+
Sbjct:   220 PPPSLMRAAGSRK 232

GO:0009733 "response to auxin stimulus" evidence=IC

TAIR|locus:2180557 IAA28 "AT5G25890" [Arabidopsis thaliana (taxid:3702)]

 Score = 188 (71.2 bits), Expect = 2.9e-31, Sum P(2) = 2.9e-31
 Identities = 44/92 (47%), Positives = 58/92 (63%)

Query:   144 SQKRTAPAPVVGWPPIRSFRKNLAGASASKLPASESPNDVPSKTVDEKPAHEPGRKNPFV 203
             S  R   APVVGWPP+RS R+NL      ++   ES         DE+       K  +V
Sbjct:    40 SNNRVEVAPVVGWPPVRSSRRNLTAQLKEEMKKKES---------DEE-------KELYV 83

Query:   204 KINMDGVPIGRKVDLNAYDSYEKLSAAVDELF 235
             KINM+GVPIGRKV+L+AY++Y++LS AVD+LF
Sbjct:    84 KINMEGVPIGRKVNLSAYNNYQQLSHAVDQLF 115

GO:0005622 "intracellular" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006417 "regulation of translation" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009733 "response to auxin stimulus" evidence=IMP

GO:0010102 "lateral root morphogenesis" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

TAIR|locus:2051154 IAA13 "auxin-induced protein 13" [Arabidopsis thaliana (taxid:3702)]

 Score = 331 (121.6 bits), Expect = 6.2e-30, P = 6.2e-30
 Identities = 87/211 (41%), Positives = 119/211 (56%)

Query:   119 DLQSPAEKKAFLSSAPAKNTAVPNSSQKRTAPAPVVGWPPIRSFRKN-LAGASASKLPAS 177
             D  S   K+A   SA    ++ P SS +      VVGWPPI S R N L    A+K  A 
Sbjct:    50 DFPSVGSKRA-ADSASHAGSSPPRSSSQ------VVGWPPIGSHRMNSLVNNQATK-SAR 101

Query:   178 ESPNDVPSKTVDEKPAHEPGRKNP-----FVKINMDGVPIGRKVDLNAYDSYEKLSAAVD 232
             E       K  D++P     + N      F+K+NMDGV IGRKVDLNA+ SYE L+  ++
Sbjct:   102 EEEEAGKKKVKDDEPKDVTKKVNGKVQVGFIKVNMDGVAIGRKVDLNAHSSYENLAQTLE 161

Query:   233 ELFRGLLAAQRDSSAGGIVNKQEEEKAITGVLDGSGEYTLVYEDNEGDRMLVGDVPWHMF 292
             ++F      + +    G+ +  +  K +  +LDGS E+ L YED EGD MLVGDVPW MF
Sbjct:   162 DMF-----FRTNPGTVGLTS--QFTKPLR-LLDGSSEFVLTYEDKEGDWMLVGDVPWRMF 213

Query:   293 VSTVTRLRVLKSSEVSALS-REKFGNSRQDK 322
             +++V RLRV+K+SE + L+ R +  N RQ K
Sbjct:   214 INSVKRLRVMKTSEANGLAARNQEPNERQRK 244

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009733 "response to auxin stimulus" evidence=RCA;TAS

GO:0005515 "protein binding" evidence=IPI

GO:0000394 "RNA splicing, via endonucleolytic cleavage and ligation" evidence=RCA

GO:0009086 "methionine biosynthetic process" evidence=RCA

TAIR|locus:2139890 IAA11 "indole-3-acetic acid inducible 11" [Arabidopsis thaliana (taxid:3702)]

 Score = 327 (120.2 bits), Expect = 1.6e-29, P = 1.6e-29
 Identities = 76/196 (38%), Positives = 106/196 (54%)

Query:   114 CTKVADLQSPAEKKAFLSSAPAKNTAVPNSSQKRTAPAPVVGWPPIRSFRKNLAGASASK 173
             C   AD  S +   + LS A         +         VVGWPPIR++R N +  + +K
Sbjct:    50 CRVYADDSSSSSSSSSLSRASVIAGIKRTADSMAATSGQVVGWPPIRTYRMN-SMVNQAK 108

Query:   174 LPASESPNDVPSKTVDEKPAHEPGRKNP-FVKINMDGVPIGRKVDLNAYDSYEKLSAAVD 232
               A+E PN   S+ V++  +     +N  FVK+ MDG+PIGRK+DLNA+  YE LS  ++
Sbjct:   109 ASATEDPNLEISQAVNKNRSDSTKMRNSMFVKVTMDGIPIGRKIDLNAHKCYESLSNTLE 168

Query:   233 ELFRGLLAAQRDSSAGGIVNKQEEEKAITGVLDGSGEYTLVYEDNEGDRMLVGDVPWHMF 292
             E+F       R     G +     E  +  + DGS    L YED EGD MLVGDVPW MF
Sbjct:   169 EMFLKPKLGSRTLETDGHM-----ETPVKILPDGSSGLVLTYEDKEGDWMLVGDVPWGMF 223

Query:   293 VSTVTRLRVLKSSEVS 308
             + +V RLR++K+SE +
Sbjct:   224 IGSVRRLRIMKTSEAT 239

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009733 "response to auxin stimulus" evidence=RCA;TAS

GO:0005515 "protein binding" evidence=IPI

GO:0009506 "plasmodesma" evidence=IDA

GO:0010583 "response to cyclopentenone" evidence=RCA

TAIR|locus:2119976 PAP2 "AT4G29080" [Arabidopsis thaliana (taxid:3702)]

 Score = 319 (117.4 bits), Expect = 1.2e-28, P = 1.2e-28
 Identities = 75/179 (41%), Positives = 105/179 (58%)

Query:   139 AVPNSSQKRTAPAP-----VVGWPPIRSFRKNLAGASASKLPASESPND-VPSKTVDEKP 192
             AVP   +K +A AP     VVGWPPIRSFRKN   +S S+ P + S  +   +K+  E+P
Sbjct:   125 AVPVKEKKSSATAPASKAQVVGWPPIRSFRKNSMASSQSQKPGNNSETEEAEAKSGPEQP 184

Query:   193 AHEPGRKNPFVKINMDGVPIGRKVDLNAYDSYEKLSAAVDELFRGLLAAQRDSSAGGIVN 252
                      +VK++M+G P  RK+DL  Y SY +LS+A++++F      Q  S  GG   
Sbjct:   185 CL-------YVKVSMEGAPYLRKIDLKTYKSYLELSSALEKMFSCFTIGQFGSH-GGCGR 236

Query:   253 KQEEEKAITGVLDGSGEYTLVYEDNEGDRMLVGDVPWHMFVSTVTRLRVLKSSEVSALS 311
                 E  +T +L GS EY + YED + D MLVGDVPW MF+ +  +LR++KSSE   L+
Sbjct:   237 DGLNESRLTDLLRGS-EYVVTYEDKDSDWMLVGDVPWEMFICSCKKLRIMKSSEAIGLA 294

GO:0005622 "intracellular" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006417 "regulation of translation" evidence=ISS

GO:0009733 "response to auxin stimulus" evidence=ISS;TAS

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0007389 "pattern specification process" evidence=RCA

GO:0048438 "floral whorl development" evidence=RCA

GO:0048439 "flower morphogenesis" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q5W670	IAA18_ORYSJ	No assigned EC number	0.4182	0.8676	0.8623	yes	no
Q8LAL2	IAA26_ARATH	No assigned EC number	0.4743	0.8030	0.9702	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00034294001 SubName- Full=Chromosome chr9 scaffold_7, whole genome shotgun sequence; (376 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	325
pfam02309	188	pfam02309, AUX_IAA, AUX/IAA family	4e-43

>gnl|CDD|216968 pfam02309, AUX_IAA, AUX/IAA family

 Score =  146 bits (371), Expect = 4e-43
 Identities = 84/268 (31%), Positives = 107/268 (39%), Gaps = 90/268 (33%)

Query: 40  KKLELRLGPPGGEDKRWSLKDSTNRERDDHHHQYLLSLGYFSSTNNSNNNGFSFLHHHSS 99
           K  ELRLG PGG +      + +                  +S+  SN  GFS       
Sbjct: 4   KATELRLGLPGGSE---PESEPS------------------TSSVTSNKRGFSE------ 36

Query: 100 RSLPVMAKESSQPCCTKVADLQSPAEKKAFLSSAPAKNTAVPNSSQKRTAPAPVVGWPPI 159
                    SS     K     S     A     PAK              A VVGWPP+
Sbjct: 37  ---VTEDGISSSLGEDKSTISVSSNGDSA---KPPAK--------------AQVVGWPPV 76

Query: 160 RSFRKNLAGASASKLPASESPNDVPSKTVDEKPAHEPGRKNPFVKINMDGVPIGRKVDLN 219
           RS+RKN      S                             +VK++MDG P  RKVDL 
Sbjct: 77  RSYRKNSLREKKSGS---------------------------YVKVSMDGAPYLRKVDLK 109

Query: 220 AYDSYEKLSAAVDELFRGLLAAQRDSSAGGIVNKQEEEKAITGVLDGSGEYTLVYEDNEG 279
            Y SY++LS+A++++F          S   I     E   +   L+GS EY   YED +G
Sbjct: 110 MYKSYDELSSALEKMF----------SCFTI----GESGLLDL-LNGS-EYVPTYEDKDG 153

Query: 280 DRMLVGDVPWHMFVSTVTRLRVLKSSEV 307
           D MLVGDVPW MFV +  RLR++K SE 
Sbjct: 154 DWMLVGDVPWEMFVESCKRLRIMKGSEA 181

Transcription of the AUX/IAA family of genes is rapidly induced by the plant hormone auxin. Some members of this family are longer and contain an N terminal DNA binding domain. The function of this region is uncertain. Length = 188

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	325
PF02309	215	AUX_IAA: AUX/IAA family; InterPro: IPR003311 The A	100.0
PF00564	84	PB1: PB1 domain; InterPro: IPR000270 The Phox and	97.09
cd06398	91	PB1_Joka2 The PB1 domain is present in the Nicotia	96.94
cd06407	82	PB1_NLP A PB1 domain is present in NIN like protei	96.8
smart00666	81	PB1 PB1 domain. Phox and Bem1p domain, present in	96.52
cd05992	81	PB1 The PB1 domain is a modular domain mediating s	96.51
cd06396	81	PB1_NBR1 The PB1 domain is an essential part of NB	96.32
cd06401	81	PB1_TFG The PB1 domain found in TFG protein, an on	95.83
cd06403	80	PB1_Par6 The PB1 domain is an essential part of Pa	94.8
cd06402	87	PB1_p62 The PB1 domain is an essential part of p62	94.57
cd06409	86	PB1_MUG70 The MUG70 protein is a product of the me	94.49
cd06404	83	PB1_aPKC PB1 domain is an essential modular domain	94.48
cd06397	82	PB1_UP1 Uncharacterized protein 1. The PB1 domain	91.97
cd06408	86	PB1_NoxR The PB1 domain is present in the Epichloe	84.59

>PF02309 AUX_IAA: AUX/IAA family; InterPro: IPR003311 The Aux/IAA family of genes are key regulators of auxin-modified gene expression []

Probab=100.00  E-value=1.4e-57  Score=411.61  Aligned_cols=137  Identities=53%  Similarity=0.887  Sum_probs=6.0

Q ss_pred             CCCCCCCccccCCccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEecCcccceeecCCCCCChH
Q 020493          146 KRTAPAPVVGWPPIRSFRKNLAGASASKLPASESPNDVPSKTVDEKPAHEPGRKNPFVKINMDGVPIGRKVDLNAYDSYE  225 (325)
Q Consensus       146 ~r~a~aqVVGWPPVRS~RKN~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~fVKV~MDGvpIGRKVDL~~y~sYe  225 (325)
                      .+.++++||||||||+||+|++....                        ....++||||+|||+||||||||++|+||+
T Consensus        79 ~p~~~~~~vgwpp~~s~r~n~~~~~~------------------------~~~~~~~vKV~mdG~~igRkVDL~~~~sY~  134 (215)
T PF02309_consen   79 PPASKAQVVGWPPVRSFRKNSLSEKQ------------------------SSSSRSYVKVNMDGVPIGRKVDLSAYSSYE  134 (215)
T ss_dssp             -------BTTBS----S---------------------------------------------------------------
T ss_pred             CCcccccccCCCcccccccccccccc------------------------cccCCceeEEEecCcccceecCHHHhhCHH
Confidence            34567899999999999999876220                        112378999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhhhcccCCCCCcccchhhhhHhhhcCCCCCCCeEEEEecCCCCeEecCCcChhHHhhcceEeEEecCc
Q 020493          226 KLSAAVDELFRGLLAAQRDSSAGGIVNKQEEEKAITGVLDGSGEYTLVYEDNEGDRMLVGDVPWHMFVSTVTRLRVLKSS  305 (325)
Q Consensus       226 eLs~aLe~MF~~~~~~q~~~s~~~~~~~~~e~k~i~~lldgs~eyvltYEDkEGDwMLVGDVPWemFv~SvKRLrImk~s  305 (325)
                      +|+.+|++||.+|.+.++.+.       ...+..+.++++++ +|+|||||+||||||||||||+|||++|||||||+.+
T Consensus       135 ~L~~~L~~MF~~~~i~~~~~~-------~~~~~~~~~~~~~~-~~~l~Y~D~egd~mlvGD~PW~~F~~~vkRl~I~~~~  206 (215)
T PF02309_consen  135 ELSSALEKMFSCFSIEQCGSH-------GLNESGLLDLLNGS-EYVLVYEDKEGDWMLVGDVPWEEFVKSVKRLRIMKSS  206 (215)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHhcCCCCccccccc-------cccchhhccccCCc-ceeEEEECCCCCEEEecCCCHHHHHHHhhccEEecHH
Confidence            999999999987755443321       11112233455665 9999999999999999999999999999999999999


Q ss_pred             ccccccccC
Q 020493          306 EVSALSREK  314 (325)
Q Consensus       306 Ea~~l~~~~  314 (325)
                      |+.+|+|++
T Consensus       207 e~~~~~~r~  215 (215)
T PF02309_consen  207 EAKGLAPRA  215 (215)
T ss_dssp             ---------
T ss_pred             HhcccCCCC
Confidence            999999974

The plant hormone auxin (indole-3-acetic acid, IAA) regulates diverse cellular and developmental responses in plants, including cell division, expansion, differentiation and patterning of embryo responses []. Auxin can regulate the gene expression of several families, including GH3 and SAUR, as well as Aux/IAA itself. The Aux/IAA proteins act as repressors of auxin-induced gene expression, possibly through modulating the activity of DNA-binding auxin response factors (ARFs) (IPR010525 from INTERPRO). Aux/IAA and ARF are thought to interact through C-terminal protein-protein interaction domains found in both Aux/IAA and ARF. Recent evidence suggests that Aux/IAA proteins can also mediate light responses []. Some members of the AUX/IAA family are longer and contain an N-terminal DNA binding domain [] and may have an early function in the establishment of vascular and body patterns in embryonic and post-embryonic development in some plants.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2P1N_F 2P1Q_C 2P1O_C.

>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins

Probab=97.09  E-value=0.0013  Score=50.45  Aligned_cols=68  Identities=24%  Similarity=0.398  Sum_probs=54.0

Q ss_pred             ceEEEecCcccceeecCCCCCChHHHHHHHHHHHhhhhhcccCCCCCcccchhhhhHhhhcCCCCCCCeEEEEecCCCCe
Q 020493          202 FVKINMDGVPIGRKVDLNAYDSYEKLSAAVDELFRGLLAAQRDSSAGGIVNKQEEEKAITGVLDGSGEYTLVYEDNEGDR  281 (325)
Q Consensus       202 fVKV~MDGvpIGRKVDL~~y~sYeeLs~aLe~MF~~~~~~q~~~s~~~~~~~~~e~k~i~~lldgs~eyvltYEDkEGDw  281 (325)
                      -|||+..|. +=|.+.+..--+|++|...+...|..                          .  ...+.|.|.|.||||
T Consensus         3 ~vK~~~~~~-~~~~~~~~~~~s~~~L~~~i~~~~~~--------------------------~--~~~~~l~Y~D~dgD~   53 (84)
T PF00564_consen    3 RVKVRYGGD-IRRIISLPSDVSFDDLRSKIREKFGL--------------------------L--DEDFQLKYKDEDGDL   53 (84)
T ss_dssp             EEEEEETTE-EEEEEEECSTSHHHHHHHHHHHHHTT--------------------------S--TSSEEEEEEETTSSE
T ss_pred             EEEEEECCe-eEEEEEcCCCCCHHHHHHHHHHHhCC--------------------------C--CccEEEEeeCCCCCE
Confidence            379999995 43458888888999999999999962                          0  136999999999999


Q ss_pred             EecCC-cChhHHhhcceE
Q 020493          282 MLVGD-VPWHMFVSTVTR  298 (325)
Q Consensus       282 MLVGD-VPWemFv~SvKR  298 (325)
                      ..+-+ .=|.+.++.+++
T Consensus        54 V~i~sd~Dl~~a~~~~~~   71 (84)
T PF00564_consen   54 VTISSDEDLQEAIEQAKE   71 (84)
T ss_dssp             EEESSHHHHHHHHHHHHH
T ss_pred             EEeCCHHHHHHHHHHHHh
Confidence            98885 457888877753

The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....

>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein

Probab=96.94  E-value=0.0032  Score=51.49  Aligned_cols=68  Identities=21%  Similarity=0.294  Sum_probs=53.7

Q ss_pred             ceEEEecCcccceeecCC---CCCChHHHHHHHHHHHhhhhhcccCCCCCcccchhhhhHhhhcCCCCCCCeEEEEecCC
Q 020493          202 FVKINMDGVPIGRKVDLN---AYDSYEKLSAAVDELFRGLLAAQRDSSAGGIVNKQEEEKAITGVLDGSGEYTLVYEDNE  278 (325)
Q Consensus       202 fVKV~MDGvpIGRKVDL~---~y~sYeeLs~aLe~MF~~~~~~q~~~s~~~~~~~~~e~k~i~~lldgs~eyvltYEDkE  278 (325)
                      -|||.-+|.-+=-++++.   .--+|+.|...+.+.|.-                           ....+|+|.|.|.|
T Consensus         2 ~vKv~y~~~~rRf~l~~~~~~~d~~~~~L~~kI~~~f~l---------------------------~~~~~~~l~Y~Ded   54 (91)
T cd06398           2 VVKVKYGGTLRRFTFPVAENQLDLNMDGLREKVEELFSL---------------------------SPDADLSLTYTDED   54 (91)
T ss_pred             EEEEEeCCEEEEEEeccccccCCCCHHHHHHHHHHHhCC---------------------------CCCCcEEEEEECCC
Confidence            489999998665666664   567999999999999951                           11247999999999


Q ss_pred             CCeEecCCcChhHHhhcceE
Q 020493          279 GDRMLVGDVPWHMFVSTVTR  298 (325)
Q Consensus       279 GDwMLVGDVPWemFv~SvKR  298 (325)
                      |||+.+-..  .+|...+.+
T Consensus        55 gd~V~l~~D--~DL~~a~~~   72 (91)
T cd06398          55 GDVVTLVDD--NDLTDAIQY   72 (91)
T ss_pred             CCEEEEccH--HHHHHHHHH
Confidence            999999887  677766665

The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module

>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium)

Probab=96.80  E-value=0.0045  Score=49.61  Aligned_cols=57  Identities=18%  Similarity=0.236  Sum_probs=42.9

Q ss_pred             ceEEEecCcccceeecCCCCCChHHHHHHHHHHHhhhhhcccCCCCCcccchhhhhHhhhcCCCCCCCeEEEEecCCCCe
Q 020493          202 FVKINMDGVPIGRKVDLNAYDSYEKLSAAVDELFRGLLAAQRDSSAGGIVNKQEEEKAITGVLDGSGEYTLVYEDNEGDR  281 (325)
Q Consensus       202 fVKV~MDGvpIGRKVDL~~y~sYeeLs~aLe~MF~~~~~~q~~~s~~~~~~~~~e~k~i~~lldgs~eyvltYEDkEGDw  281 (325)
                      =|||...|.-  +.+-|..--+|++|...+.++|..                           +..+.|.|-|.|.||||
T Consensus         2 ~vK~~~~~d~--~r~~l~~~~~~~~L~~~i~~r~~~---------------------------~~~~~f~LkY~Ddegd~   52 (82)
T cd06407           2 RVKATYGEEK--IRFRLPPSWGFTELKQEIAKRFKL---------------------------DDMSAFDLKYLDDDEEW   52 (82)
T ss_pred             EEEEEeCCeE--EEEEcCCCCCHHHHHHHHHHHhCC---------------------------CCCCeeEEEEECCCCCe
Confidence            3899998864  344455555999999999999961                           01137999999999999


Q ss_pred             EecCCc
Q 020493          282 MLVGDV  287 (325)
Q Consensus       282 MLVGDV  287 (325)
                      .++--.
T Consensus        53 v~ltsd   58 (82)
T cd06407          53 VLLTCD   58 (82)
T ss_pred             EEeecH
Confidence            987543

The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte

>smart00666 PB1 PB1 domain

Probab=96.52  E-value=0.014  Score=44.68  Aligned_cols=65  Identities=25%  Similarity=0.374  Sum_probs=50.4

Q ss_pred             eEEEecCcccceeecCCCCCChHHHHHHHHHHHhhhhhcccCCCCCcccchhhhhHhhhcCCCCCCCeEEEEecCCCCeE
Q 020493          203 VKINMDGVPIGRKVDLNAYDSYEKLSAAVDELFRGLLAAQRDSSAGGIVNKQEEEKAITGVLDGSGEYTLVYEDNEGDRM  282 (325)
Q Consensus       203 VKV~MDGvpIGRKVDL~~y~sYeeLs~aLe~MF~~~~~~q~~~s~~~~~~~~~e~k~i~~lldgs~eyvltYEDkEGDwM  282 (325)
                      |||.-.|  --|.+-+..--+|++|...+.+.|..                           . ...+.|.|.|.||||+
T Consensus         4 vK~~~~~--~~~~~~~~~~~s~~dL~~~i~~~~~~---------------------------~-~~~~~l~Y~Dedgd~v   53 (81)
T smart00666        4 VKLRYGG--ETRRLSVPRDISFEDLRSKVAKRFGL---------------------------D-NQSFTLKYQDEDGDLV   53 (81)
T ss_pred             EEEEECC--EEEEEEECCCCCHHHHHHHHHHHhCC---------------------------C-CCCeEEEEECCCCCEE
Confidence            7887754  35777777788999999999999951                           0 1368999999999999


Q ss_pred             ecCC-cChhHHhhcce
Q 020493          283 LVGD-VPWHMFVSTVT  297 (325)
Q Consensus       283 LVGD-VPWemFv~SvK  297 (325)
                      .+.+ .=|.+.++.++
T Consensus        54 ~l~sd~Dl~~a~~~~~   69 (81)
T smart00666       54 SLTSDEDLEEAIEEYD   69 (81)
T ss_pred             EecCHHHHHHHHHHHH
Confidence            7765 56777777665

Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.

>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity

Probab=96.51  E-value=0.015  Score=44.24  Aligned_cols=66  Identities=21%  Similarity=0.272  Sum_probs=50.2

Q ss_pred             ceEEEecCcccceeecCC-CCCChHHHHHHHHHHHhhhhhcccCCCCCcccchhhhhHhhhcCCCCCCCeEEEEecCCCC
Q 020493          202 FVKINMDGVPIGRKVDLN-AYDSYEKLSAAVDELFRGLLAAQRDSSAGGIVNKQEEEKAITGVLDGSGEYTLVYEDNEGD  280 (325)
Q Consensus       202 fVKV~MDGvpIGRKVDL~-~y~sYeeLs~aLe~MF~~~~~~q~~~s~~~~~~~~~e~k~i~~lldgs~eyvltYEDkEGD  280 (325)
                      -|||+-.|.  -|.+=+. .--+|++|...|.+.|...                            ...+.+.|.|.|||
T Consensus         2 ~vK~~~~~~--~~~~~~~~~~~s~~~L~~~i~~~~~~~----------------------------~~~~~l~y~D~e~d   51 (81)
T cd05992           2 RVKVKYGGE--IRRFVVVSRSISFEDLRSKIAEKFGLD----------------------------AVSFKLKYPDEDGD   51 (81)
T ss_pred             cEEEEecCC--CEEEEEecCCCCHHHHHHHHHHHhCCC----------------------------CCcEEEEeeCCCCC
Confidence            378888764  2444444 7889999999999999620                            03689999999999


Q ss_pred             eEecCC-cChhHHhhcce
Q 020493          281 RMLVGD-VPWHMFVSTVT  297 (325)
Q Consensus       281 wMLVGD-VPWemFv~SvK  297 (325)
                      |..+.+ .=|++.++.++
T Consensus        52 ~v~l~sd~Dl~~a~~~~~   69 (81)
T cd05992          52 LVTISSDEDLEEAIEEAR   69 (81)
T ss_pred             EEEeCCHHHHHHHHHHHh
Confidence            999988 56777777665

A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.

>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62

Probab=96.32  E-value=0.013  Score=47.38  Aligned_cols=53  Identities=21%  Similarity=0.346  Sum_probs=45.6

Q ss_pred             eEEEecCcccceeecCCCCCChHHHHHHHHHHHhhhhhcccCCCCCcccchhhhhHhhhcCCCCCCCeEEEEecCCCCeE
Q 020493          203 VKINMDGVPIGRKVDLNAYDSYEKLSAAVDELFRGLLAAQRDSSAGGIVNKQEEEKAITGVLDGSGEYTLVYEDNEGDRM  282 (325)
Q Consensus       203 VKV~MDGvpIGRKVDL~~y~sYeeLs~aLe~MF~~~~~~q~~~s~~~~~~~~~e~k~i~~lldgs~eyvltYEDkEGDwM  282 (325)
                      |||.-.|.-+--+++-+..-+|++|...+.++|.                           ++   .|.|.|-|.||||+
T Consensus         3 vKaty~~d~~rf~~~~~~~~~~~~L~~ev~~rf~---------------------------l~---~f~lKYlDde~e~v   52 (81)
T cd06396           3 LKVTYNGESQSFLVSDSENTTWASVEAMVKVSFG---------------------------LN---DIQIKYVDEENEEV   52 (81)
T ss_pred             EEEEECCeEEEEEecCCCCCCHHHHHHHHHHHhC---------------------------CC---cceeEEEcCCCCEE
Confidence            7999999877778888888899999999999995                           11   58999999999998


Q ss_pred             ecC
Q 020493          283 LVG  285 (325)
Q Consensus       283 LVG  285 (325)
                      ++-
T Consensus        53 ~ls   55 (81)
T cd06396          53 SVN   55 (81)
T ss_pred             EEE
Confidence            874

A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.

>cd06401 PB1_TFG The PB1 domain found in TFG protein, an oncogenic gene product and fusion partner to nerve growth factor tyrosine kinase receptor TrkA and to the tyrosine kinase ALK

Probab=95.83  E-value=0.045  Score=44.48  Aligned_cols=72  Identities=25%  Similarity=0.526  Sum_probs=48.4

Q ss_pred             eEEEecCcccceeecCCCCC-ChHHHHHHHHHHHhhhhhcccCCCCCcccchhhhhHhhhcCCCCCCCeEEEEecCCCCe
Q 020493          203 VKINMDGVPIGRKVDLNAYD-SYEKLSAAVDELFRGLLAAQRDSSAGGIVNKQEEEKAITGVLDGSGEYTLVYEDNEGDR  281 (325)
Q Consensus       203 VKV~MDGvpIGRKVDL~~y~-sYeeLs~aLe~MF~~~~~~q~~~s~~~~~~~~~e~k~i~~lldgs~eyvltYEDkEGDw  281 (325)
                      +|+...| .| |.+=+..-. +|.+|...+.+.|...                         +..+..+.+.|.|.|||+
T Consensus         3 iK~~~g~-Di-R~~~~~~~~~t~~~L~~~v~~~F~~~-------------------------~~~~~~flIKYkD~dGDl   55 (81)
T cd06401           3 LKAQLGD-DI-RRIPIHNEDITYDELLLMMQRVFRGK-------------------------LGSSDDVLIKYKDEDGDL   55 (81)
T ss_pred             EEEEeCC-eE-EEEeccCccccHHHHHHHHHHHhccc-------------------------cCCcccEEEEEECCCCCE
Confidence            6776655 35 444444323 9999999999999731                         112357999999999999


Q ss_pred             EecCCc---ChhHHhhcceEeEE
Q 020493          282 MLVGDV---PWHMFVSTVTRLRV  301 (325)
Q Consensus       282 MLVGDV---PWemFv~SvKRLrI  301 (325)
                      .=|-+-   -|..=.....||+|
T Consensus        56 VTIts~~dL~~A~~~~~~~~l~~   78 (81)
T cd06401          56 ITIFDSSDLSFAIQCSRILKLTL   78 (81)
T ss_pred             EEeccHHHHHHHHhcCcceEEEE
Confidence            999875   33333334445555

The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The PB1 domains of TFG represent a type I/II PB1 domain. The physiological function of TFG remains unknown.

>cd06403 PB1_Par6 The PB1 domain is an essential part of Par6 protein which in complex with Par3 and aPKC proteins is crucial for establishment of apical-basal polarity of animal cells

Probab=94.80  E-value=0.083  Score=42.93  Aligned_cols=72  Identities=21%  Similarity=0.295  Sum_probs=51.0

Q ss_pred             eEEEecCcccceeecCCCCCChHHHHHHHHHHHhhhhhcccCCCCCcccchhhhhHhhhcCCCCCCCeEEEEecCCCCeE
Q 020493          203 VKINMDGVPIGRKVDLNAYDSYEKLSAAVDELFRGLLAAQRDSSAGGIVNKQEEEKAITGVLDGSGEYTLVYEDNEGDRM  282 (325)
Q Consensus       203 VKV~MDGvpIGRKVDL~~y~sYeeLs~aLe~MF~~~~~~q~~~s~~~~~~~~~e~k~i~~lldgs~eyvltYEDkEGDwM  282 (325)
                      ||...|+.=-=-.+|.....+|+++..-|+.||.-                           . .-.|+|-|.|.+||.+
T Consensus         3 VKSkfdaEfRRFsl~r~~~~~f~ef~~ll~~lH~l---------------------------~-~~~f~i~Y~D~~gDLL   54 (80)
T cd06403           3 VKSKFDAEFRRFSLDRNKPGKFEDFYKLLEHLHHI---------------------------P-NVDFLIGYTDPHGDLL   54 (80)
T ss_pred             eecccCCeEEEEEeccccCcCHHHHHHHHHHHhCC---------------------------C-CCcEEEEEeCCCCCEe
Confidence            56666665333356666679999999999999961                           1 1369999999999999


Q ss_pred             ecC-CcChhHHhhcceE-eEEe
Q 020493          283 LVG-DVPWHMFVSTVTR-LRVL  302 (325)
Q Consensus       283 LVG-DVPWemFv~SvKR-LrIm  302 (325)
                      =+- |+-...=++++++ |||+
T Consensus        55 PInNDdNf~kAlssa~plLRl~   76 (80)
T cd06403          55 PINNDDNFLKALSSANPLLRIF   76 (80)
T ss_pred             cccCcHHHHHHHHcCCCceEEE
Confidence            775 4555555667764 4443

The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The

>cd06402 PB1_p62 The PB1 domain is an essential part of p62 scaffold protein (alias sequestosome 1,SQSTM) involved in cell signaling, receptor internalization, and protein turnover

Probab=94.57  E-value=0.13  Score=42.06  Aligned_cols=59  Identities=32%  Similarity=0.501  Sum_probs=43.1

Q ss_pred             CceEEEecC----ccccee--ecCCCCCChHHHHHHHHHHHhhhhhcccCCCCCcccchhhhhHhhhcCCCCCCCeEEEE
Q 020493          201 PFVKINMDG----VPIGRK--VDLNAYDSYEKLSAAVDELFRGLLAAQRDSSAGGIVNKQEEEKAITGVLDGSGEYTLVY  274 (325)
Q Consensus       201 ~fVKV~MDG----vpIGRK--VDL~~y~sYeeLs~aLe~MF~~~~~~q~~~s~~~~~~~~~e~k~i~~lldgs~eyvltY  274 (325)
                      +.||.+..|    ..| |.  ||=...-+|+.|...+.++|...                          .+ ..|+|.|
T Consensus         1 ~~vkayl~~~~~~~EI-RRf~l~~~~~~s~~~L~~~V~~~f~~l--------------------------~~-~~ftlky   52 (87)
T cd06402           1 LTVKAYLLGKDANAEI-RRFAIDEDVSTSYEYLVEKVAAVFPSL--------------------------RG-KNFQLFW   52 (87)
T ss_pred             CeEEEeecCCCCccce-EEEEecCCCCcCHHHHHHHHHHHcccc--------------------------CC-CcEEEEE
Confidence            357777766    333 44  34466779999999999999621                          11 3799999


Q ss_pred             ecCCCCeEecCCc
Q 020493          275 EDNEGDRMLVGDV  287 (325)
Q Consensus       275 EDkEGDwMLVGDV  287 (325)
                      .|.|||..-+...
T Consensus        53 ~DeeGDlvtIssd   65 (87)
T cd06402          53 KDEEGDLVAFSSD   65 (87)
T ss_pred             ECCCCCEEeecCH
Confidence            9999999887764

The PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.

>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain

Probab=94.49  E-value=0.072  Score=43.52  Aligned_cols=53  Identities=26%  Similarity=0.406  Sum_probs=37.8

Q ss_pred             cccceeecCC--CCCChHHHHHHHHHHHhhhhhcccCCCCCcccchhhhhHhhhcCCCCCCCeEEEEecCCCCeEecCCc
Q 020493          210 VPIGRKVDLN--AYDSYEKLSAAVDELFRGLLAAQRDSSAGGIVNKQEEEKAITGVLDGSGEYTLVYEDNEGDRMLVGDV  287 (325)
Q Consensus       210 vpIGRKVDL~--~y~sYeeLs~aLe~MF~~~~~~q~~~s~~~~~~~~~e~k~i~~lldgs~eyvltYEDkEGDwMLVGDV  287 (325)
                      .|-||.+=++  ...||.+|..++.+=|+.                       ....  .+.|.|.|.|.||||+|.-=.
T Consensus         7 ~~~GrvhRf~~~~s~~~~~L~~~I~~Rl~~-----------------------d~~~--~~~~~L~YlDDEgD~VllT~D   61 (86)
T cd06409           7 DPKGRVHRFRLRPSESLEELRTLISQRLGD-----------------------DDFE--THLYALSYVDDEGDIVLITSD   61 (86)
T ss_pred             CCCCCEEEEEecCCCCHHHHHHHHHHHhCC-----------------------cccc--CCcccEEEEcCCCCEEEEecc
Confidence            4566655444  478999999999998852                       0000  236999999999999987533

The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is

>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells

Probab=94.48  E-value=0.12  Score=42.19  Aligned_cols=56  Identities=27%  Similarity=0.328  Sum_probs=43.8

Q ss_pred             eEEEecCcccceeecCCCCCChHHHHHHHHHHHhhhhhcccCCCCCcccchhhhhHhhhcCCCCCCCeEEEEecCCCCeE
Q 020493          203 VKINMDGVPIGRKVDLNAYDSYEKLSAAVDELFRGLLAAQRDSSAGGIVNKQEEEKAITGVLDGSGEYTLVYEDNEGDRM  282 (325)
Q Consensus       203 VKV~MDGvpIGRKVDL~~y~sYeeLs~aLe~MF~~~~~~q~~~s~~~~~~~~~e~k~i~~lldgs~eyvltYEDkEGDwM  282 (325)
                      ||++-.|.-.--.+|.  .-+|+.|.+.+.+||.-                          .. ...|++.|.|.|||-.
T Consensus         3 ~K~~y~gdi~it~~d~--~~s~e~L~~~v~~~c~~--------------------------~~-~q~ft~kw~DEEGDp~   53 (83)
T cd06404           3 VKAAYNGDIMITSIDP--SISLEELCNEVRDMCRF--------------------------HN-DQPFTLKWIDEEGDPC   53 (83)
T ss_pred             EEEEecCcEEEEEcCC--CcCHHHHHHHHHHHhCC--------------------------CC-CCcEEEEEECCCCCce
Confidence            7899999755555666  67899999999999962                          11 1369999999999988


Q ss_pred             ecCCc
Q 020493          283 LVGDV  287 (325)
Q Consensus       283 LVGDV  287 (325)
                      -+...
T Consensus        54 tiSS~   58 (83)
T cd06404          54 TISSQ   58 (83)
T ss_pred             eecCH
Confidence            77654

PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,

>cd06397 PB1_UP1 Uncharacterized protein 1

Probab=91.97  E-value=0.54  Score=38.49  Aligned_cols=66  Identities=18%  Similarity=0.301  Sum_probs=49.0

Q ss_pred             eEEEecCcccceeecCCCCCChHHHHHHHHHHHhhhhhcccCCCCCcccchhhhhHhhhcCCCCCCCeEEEEecCCCCeE
Q 020493          203 VKINMDGVPIGRKVDLNAYDSYEKLSAAVDELFRGLLAAQRDSSAGGIVNKQEEEKAITGVLDGSGEYTLVYEDNEGDRM  282 (325)
Q Consensus       203 VKV~MDGvpIGRKVDL~~y~sYeeLs~aLe~MF~~~~~~q~~~s~~~~~~~~~e~k~i~~lldgs~eyvltYEDkEGDwM  282 (325)
                      -||+-.|.  .|++-...-=+|..|...|+.+|.-.                           .. .+.|||.|.|||.+
T Consensus         3 fKv~~~g~--~RRf~~~~~pt~~~L~~kl~~Lf~lp---------------------------~~-~~~vtYiDeD~D~I   52 (82)
T cd06397           3 FKSSFLGD--TRRIVFPDIPTWEALASKLENLYNLP---------------------------EI-KVGVTYIDNDNDEI   52 (82)
T ss_pred             EEEEeCCc--eEEEecCCCccHHHHHHHHHHHhCCC---------------------------hh-HeEEEEEcCCCCEE
Confidence            47777773  68888888889999999999999621                           01 27999999999988


Q ss_pred             ecCC-cChhHHhhcceE
Q 020493          283 LVGD-VPWHMFVSTVTR  298 (325)
Q Consensus       283 LVGD-VPWemFv~SvKR  298 (325)
                      -+-| .=-++|.+-..|
T Consensus        53 Tlssd~eL~d~~~~~~~   69 (82)
T cd06397          53 TLSSNKELQDFYRLSHR   69 (82)
T ss_pred             EecchHHHHHHHHhccc
Confidence            5554 555566654444

The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.

>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA

Probab=84.59  E-value=3.3  Score=34.04  Aligned_cols=64  Identities=17%  Similarity=0.298  Sum_probs=47.2

Q ss_pred             ceEEEecCcccceeecCCCCCChHHHHHHHHHHHhhhhhcccCCCCCcccchhhhhHhhhcCCCCCCCeEEEEecCCCCe
Q 020493          202 FVKINMDGVPIGRKVDLNAYDSYEKLSAAVDELFRGLLAAQRDSSAGGIVNKQEEEKAITGVLDGSGEYTLVYEDNEGDR  281 (325)
Q Consensus       202 fVKV~MDGvpIGRKVDL~~y~sYeeLs~aLe~MF~~~~~~q~~~s~~~~~~~~~e~k~i~~lldgs~eyvltYEDkEGDw  281 (325)
                      =|||+-.|.  -|-|-+..-=+|++|...+.++|.-                             ...++|-|.|. ||.
T Consensus         4 kVKv~~~~D--v~~i~v~~~i~f~dL~~kIrdkf~~-----------------------------~~~~~iKykDE-GD~   51 (86)
T cd06408           4 RVKVHAQDD--TRYIMIGPDTGFADFEDKIRDKFGF-----------------------------KRRLKIKMKDD-GDM   51 (86)
T ss_pred             EEEEEecCc--EEEEEcCCCCCHHHHHHHHHHHhCC-----------------------------CCceEEEEEcC-CCC
Confidence            488888886  4556666666799999999999951                             02689999999 999


Q ss_pred             EecCCc-ChhHHhhcce
Q 020493          282 MLVGDV-PWHMFVSTVT  297 (325)
Q Consensus       282 MLVGDV-PWemFv~SvK  297 (325)
                      .-++|- =-++=+.++|
T Consensus        52 iti~sq~DLd~Ai~~a~   68 (86)
T cd06408          52 ITMGDQDDLDMAIDTAR   68 (86)
T ss_pred             ccccCHHHHHHHHHHHH
Confidence            988874 2344444444

NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	325
1vd2_A	89	Protein kinase C, IOTA type; PB1 domain, OPCA moti	95.44
1wmh_B	86	Partitioning defective-6 homolog alpha; kinase, PB	95.23
2kkc_A	102	Sequestosome-1; P62, PB1, autophagy, ubiquitin-pro	93.73
2ktr_A	117	Sequestosome-1; autophagy, NF-KB signaling, HOMO-o	91.82
1q1o_A	98	Cell division control protein 24; PB1 domain, PCCR	88.0

>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A

Probab=95.44  E-value=0.037  Score=44.20  Aligned_cols=58  Identities=22%  Similarity=0.210  Sum_probs=43.6

Q ss_pred             CCceEEEecCcccceeecCCCCCChHHHHHHHHHHHhhhhhcccCCCCCcccchhhhhHhhhcCCCCCCCeEEEEecCCC
Q 020493          200 NPFVKINMDGVPIGRKVDLNAYDSYEKLSAAVDELFRGLLAAQRDSSAGGIVNKQEEEKAITGVLDGSGEYTLVYEDNEG  279 (325)
Q Consensus       200 ~~fVKV~MDGvpIGRKVDL~~y~sYeeLs~aLe~MF~~~~~~q~~~s~~~~~~~~~e~k~i~~lldgs~eyvltYEDkEG  279 (325)
                      .+=|||+-.|--+--.|+.  .-+|++|...|.++|.-                          .. ...|++.|.|.||
T Consensus         6 ~vkvK~~~~gdi~~~~v~~--~i~~~~L~~kv~~~~~~--------------------------~~-~~~f~lky~DEeG   56 (89)
T 1vd2_A            6 QVRVKAYYRGDIMITHFEP--SISFEGLCNEVRDMCSF--------------------------DN-EQLFTMKWIDEEG   56 (89)
T ss_dssp             CEEEEEESSSCEEEEEECT--TCCHHHHHHHHHHHTTC--------------------------CS-SCCEEEEECCSSS
T ss_pred             eEEEEEEeCCeEEEEECCC--CCCHHHHHHHHHHHhCC--------------------------CC-CCeEEEEEECCCC
Confidence            3568889999755444555  56999999999999961                          01 1369999999999


Q ss_pred             CeEecCC
Q 020493          280 DRMLVGD  286 (325)
Q Consensus       280 DwMLVGD  286 (325)
                      |+.-+-.
T Consensus        57 D~itisS   63 (89)
T 1vd2_A           57 DPCTVSS   63 (89)
T ss_dssp             CCEECCS
T ss_pred             CcccccC
Confidence            9976654

>1wmh_B Partitioning defective-6 homolog alpha; kinase, PB1 domain, OPCA motif, APKC, cell polarity, transferase/cell cycle complex; 1.50A {Homo sapiens} SCOP: d.15.2.2

Probab=95.23  E-value=0.041  Score=43.94  Aligned_cols=69  Identities=14%  Similarity=0.130  Sum_probs=51.1

Q ss_pred             CceEEEecCcccceeecCCCCCChHHHHHHHHHHHhhhhhcccCCCCCcccchhhhhHhhhcCCCCCCCeEEEEecCCCC
Q 020493          201 PFVKINMDGVPIGRKVDLNAYDSYEKLSAAVDELFRGLLAAQRDSSAGGIVNKQEEEKAITGVLDGSGEYTLVYEDNEGD  280 (325)
Q Consensus       201 ~fVKV~MDGvpIGRKVDL~~y~sYeeLs~aLe~MF~~~~~~q~~~s~~~~~~~~~e~k~i~~lldgs~eyvltYEDkEGD  280 (325)
                      .-||...|+.--=-.||-+...+|++|..-|+++|.-  .                          ...|++.|.|.|||
T Consensus         7 l~vKskf~aE~RRFs~d~~~~~~fe~f~~lv~~lh~L--~--------------------------~~~f~i~Y~D~dGD   58 (86)
T 1wmh_B            7 VEVKSKFDAEFRRFALPRASVSGFQEFSRLLRAVHQI--P--------------------------GLDVLLGYTDAHGD   58 (86)
T ss_dssp             EEEEEEETTEEEEEEEEGGGCCCHHHHHHHHHHHTTC--T--------------------------TCCCEEEEECTTSC
T ss_pred             EEEEeecCCeeeEeEccCCCCCCHHHHHHHHHHHcCC--C--------------------------CCCEEEEEECCCCC
Confidence            4588888886433356666778999999999999961  1                          13699999999999


Q ss_pred             eEecCCc-ChhHHhhcce
Q 020493          281 RMLVGDV-PWHMFVSTVT  297 (325)
Q Consensus       281 wMLVGDV-PWemFv~SvK  297 (325)
                      ++=+=+. =..+=+.++|
T Consensus        59 LlpInnDdnl~~Al~~a~   76 (86)
T 1wmh_B           59 LLPLTNDDSLHRALASGP   76 (86)
T ss_dssp             EEECCSHHHHHHHTTSSS
T ss_pred             EeeecCHHHHHHHHHhCC
Confidence            9988765 3334455666

>2kkc_A Sequestosome-1; P62, PB1, autophagy, ubiquitin-proteasome system, NF-KB signaling, alternative splicing, apoptosis, cytoplasm, differentiation; NMR {Rattus norvegicus} PDB: 2ktr_B

Probab=93.73  E-value=0.098  Score=42.69  Aligned_cols=61  Identities=23%  Similarity=0.255  Sum_probs=43.8

Q ss_pred             CCceEEEecCc----ccceeecCCC-----------CCChHHHHHHHHHHHhhhhhcccCCCCCcccchhhhhHhhhcCC
Q 020493          200 NPFVKINMDGV----PIGRKVDLNA-----------YDSYEKLSAAVDELFRGLLAAQRDSSAGGIVNKQEEEKAITGVL  264 (325)
Q Consensus       200 ~~fVKV~MDGv----pIGRKVDL~~-----------y~sYeeLs~aLe~MF~~~~~~q~~~s~~~~~~~~~e~k~i~~ll  264 (325)
                      ++-||++..|-    .==|.+=|..           ..+|+.|...+.++|..+                          
T Consensus         5 ~~~vKayl~~~~~~~~EiRRF~l~~~~~p~~~~~~~~~s~~~L~~~V~~lFp~l--------------------------   58 (102)
T 2kkc_A            5 SLTVKAYLLGKEEAAREIRRFSFCFSPEPEAEAAAGPGPCERLLSRVAVLFPAL--------------------------   58 (102)
T ss_dssp             EEEEEEEEECSSSCEEEEEEEEEESSSCSCSSSCCSCCHHHHHHHHHHHHCTTS--------------------------
T ss_pred             eEEEEEEEccCCCCCCceEEEEeccCCCcccccccccccHHHHHHHHHHHcccc--------------------------
Confidence            45688888752    2235554432           248999999999999631                          


Q ss_pred             CCCCCeEEEEecCCCCeEecCCc
Q 020493          265 DGSGEYTLVYEDNEGDRMLVGDV  287 (325)
Q Consensus       265 dgs~eyvltYEDkEGDwMLVGDV  287 (325)
                      .+ ..|.|.|.|.|||++-+-+.
T Consensus        59 ~~-~~f~l~Y~DedGDlItiSsD   80 (102)
T 2kkc_A           59 RP-GGFQAHYRAERGDLVAFSSD   80 (102)
T ss_dssp             CS-SCEEEEEECTTCCEEEECSH
T ss_pred             CC-CcEEEEEECCCCCEEEecCH
Confidence            11 36999999999999888765

>2ktr_A Sequestosome-1; autophagy, NF-KB signaling, HOMO-oligomer, PB1 dimer, signaling protein, transport protein; NMR {Rattus norvegicus}

Probab=91.82  E-value=0.29  Score=40.98  Aligned_cols=61  Identities=25%  Similarity=0.318  Sum_probs=44.5

Q ss_pred             CCCceEEEecC-----cccceeecCC-----------CCCChHHHHHHHHHHHhhhhhcccCCCCCcccchhhhhHhhhc
Q 020493          199 KNPFVKINMDG-----VPIGRKVDLN-----------AYDSYEKLSAAVDELFRGLLAAQRDSSAGGIVNKQEEEKAITG  262 (325)
Q Consensus       199 ~~~fVKV~MDG-----vpIGRKVDL~-----------~y~sYeeLs~aLe~MF~~~~~~q~~~s~~~~~~~~~e~k~i~~  262 (325)
                      .++-||++..|     ..| |++=|.           .-.+|+.|...+.++|..                         
T Consensus        19 ~~l~vKayl~~~~~~~~EI-RRF~l~~~~~p~~~~~~~~~s~~~L~~kV~~lFp~-------------------------   72 (117)
T 2ktr_A           19 GSLTVKAYLLGKEEAAREI-RRFSFCFSPEPEAEAAAGPGPSERLLSRVAVLFPA-------------------------   72 (117)
T ss_dssp             -CEEEEEEEECSSSCEEEE-EEEEECSSSCSCSSSCCSCCHHHHHHHHHHHHCTT-------------------------
T ss_pred             ccEEEEEEEecCCCCCCcE-EEEEeccCCCccccccccCCCHHHHHHHHHHHccc-------------------------
Confidence            46789999974     223 555443           245999999999999962                         


Q ss_pred             CCCCCCCeEEEEecCCCCeEecCCc
Q 020493          263 VLDGSGEYTLVYEDNEGDRMLVGDV  287 (325)
Q Consensus       263 lldgs~eyvltYEDkEGDwMLVGDV  287 (325)
                       |.+ ..|.|.|.|.|||++-+-..
T Consensus        73 -L~~-~~f~l~YkDEdGDlItISsD   95 (117)
T 2ktr_A           73 -LRP-GGFQAHYRAERGDLVAFSSD   95 (117)
T ss_dssp             -SCS-SCEEEEEECTTCCEEEECSH
T ss_pred             -cCC-CcEEEEEECCCCCEEEecCH
Confidence             112 36999999999999887764

>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B

Probab=88.00  E-value=1.4  Score=35.78  Aligned_cols=74  Identities=14%  Similarity=0.292  Sum_probs=52.7

Q ss_pred             CceEEEecCc----ccc--eeecCCCCCChHHHHHHHHHHHhhhhhcccCCCCCcccchhhhhHhhhcCCCCCCCeEEEE
Q 020493          201 PFVKINMDGV----PIG--RKVDLNAYDSYEKLSAAVDELFRGLLAAQRDSSAGGIVNKQEEEKAITGVLDGSGEYTLVY  274 (325)
Q Consensus       201 ~fVKV~MDGv----pIG--RKVDL~~y~sYeeLs~aLe~MF~~~~~~q~~~s~~~~~~~~~e~k~i~~lldgs~eyvltY  274 (325)
                      +-|||+-+..    .++  +.|=+..--+|++|...+.+-|..+..   +                 + .  +....|-|
T Consensus         6 ikVKv~y~~~~~~~~~~d~~~i~V~~~i~f~~L~~kI~~Kl~~~~~---~-----------------~-i--~~~~klkY   62 (98)
T 1q1o_A            6 ILFRISYNNNSNNTSSSEIFTLLVEKVWNFDDLIMAINSKISNTHN---N-----------------N-I--SPITKIKY   62 (98)
T ss_dssp             EEEEEEECSSCSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHHCS---S-----------------C-C--CCCCCEEE
T ss_pred             EEEEEEecCcccccccCcEEEEEecCCCCHHHHHHHHHHHHcCCcc---c-----------------c-c--cceeEEEE
Confidence            5678877632    122  566667778899999999999974210   0                 0 0  13468999


Q ss_pred             ecCCCCeEecCC-cChhHHhhcce
Q 020493          275 EDNEGDRMLVGD-VPWHMFVSTVT  297 (325)
Q Consensus       275 EDkEGDwMLVGD-VPWemFv~SvK  297 (325)
                      +|.|||+...++ .=|+|-+.+++
T Consensus        63 kDEdGD~Vtl~sddDl~~A~e~~~   86 (98)
T 1q1o_A           63 QDEDGDFVVLGSDEDWNVAKEMLA   86 (98)
T ss_dssp             ECSSSCEEEECSHHHHHHHHHHHH
T ss_pred             EcCCCCEEEEcCHHHHHHHHHHHH
Confidence            999999988877 58998888763

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	325
d2bkfa1	85	Next to BRCA1 gene 1 protein, NBR1 (KIAA0049) {Hum	96.62
d1ip9a_	85	Bud emergence mediator Bemp1 {Baker's yeast (Sacch	95.35
d1wmhb_	82	Partitioning defective-6 homolog alpha, PAR-6 alph	84.09

>d2bkfa1 d.15.2.2 (A:1-85) Next to BRCA1 gene 1 protein, NBR1 (KIAA0049) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Next to BRCA1 gene 1 protein, NBR1 (KIAA0049)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.62  E-value=0.0023  Score=49.12  Aligned_cols=63  Identities=13%  Similarity=0.184  Sum_probs=49.7

Q ss_pred             ceEEEecCcccceeecCCCCCChHHHHHHHHHHHhhhhhcccCCCCCcccchhhhhHhhhcCCCCCCCeEEEEecCCCCe
Q 020493          202 FVKINMDGVPIGRKVDLNAYDSYEKLSAAVDELFRGLLAAQRDSSAGGIVNKQEEEKAITGVLDGSGEYTLVYEDNEGDR  281 (325)
Q Consensus       202 fVKV~MDGvpIGRKVDL~~y~sYeeLs~aLe~MF~~~~~~q~~~s~~~~~~~~~e~k~i~~lldgs~eyvltYEDkEGDw  281 (325)
                      =|||...|..|=-+|-+..-.+|.+|...|...|.                           +   ..+.|.|-|.||||
T Consensus         6 tvKvtf~~dt~RF~ls~~~~~~~~~L~~~i~~rf~---------------------------l---~~~~lkY~Ddd~e~   55 (85)
T d2bkfa1           6 TLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFD---------------------------L---NTIQIKYLDEENEE   55 (85)
T ss_dssp             EEEEEETTEEEEEEESCGGGCCHHHHHHHHHHHHT---------------------------C---SSEEEEEECTTSCE
T ss_pred             EEEEEECCceEEEEecCCCCCcHHHHHHHHHHhcC---------------------------c---ccceEEEEcCCCCE
Confidence            58999999766667877788999999999999995                           1   24889999999999


Q ss_pred             EecCC-cChhHHhh
Q 020493          282 MLVGD-VPWHMFVS  294 (325)
Q Consensus       282 MLVGD-VPWemFv~  294 (325)
                      +++.- .=-++.+.
T Consensus        56 v~l~~d~dl~E~~~   69 (85)
T d2bkfa1          56 VSINSQGEYEEALK   69 (85)
T ss_dssp             EEECSHHHHHHHHH
T ss_pred             EEEecHHHHHHHHH
Confidence            98764 33445444

>d1ip9a_ d.15.2.2 (A:) Bud emergence mediator Bemp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Bud emergence mediator Bemp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.35  E-value=0.018  Score=43.16  Aligned_cols=72  Identities=10%  Similarity=0.107  Sum_probs=51.0

Q ss_pred             CCCCceEEEecCcccceeecCCCCCChHHHHHHHHHHHhhhhhcccCCCCCcccchhhhhHhhhcCCCCCCCeEEEEecC
Q 020493          198 RKNPFVKINMDGVPIGRKVDLNAYDSYEKLSAAVDELFRGLLAAQRDSSAGGIVNKQEEEKAITGVLDGSGEYTLVYEDN  277 (325)
Q Consensus       198 ~~~~fVKV~MDGvpIGRKVDL~~y~sYeeLs~aLe~MF~~~~~~q~~~s~~~~~~~~~e~k~i~~lldgs~eyvltYEDk  277 (325)
                      .+..=|||+..+.-+-=+|  ..--+|.+|...+.+.|..                              ..|+|-|.|.
T Consensus        10 ~~~ikVKv~~~~D~~~~~l--~~~it~~dL~~kI~~rf~~------------------------------~~~~lkY~De   57 (85)
T d1ip9a_          10 LKTTKIKFYYKDDIFALML--KGDTTYKELRSKIAPRIDT------------------------------DNFKLQTKLF   57 (85)
T ss_dssp             CCCEEEEECBTTCCEEEEE--CSCCCHHHHHHHHHHHHTS------------------------------SCEEEEECCS
T ss_pred             CCCEEEEEEECCcEEEEEe--CCCCCHHHHHHHHHHHhCC------------------------------CceEEEEEcC
Confidence            3456789998887544444  5557899999999999941                              2489999999


Q ss_pred             CCCeEecCCc-ChhHHhhcceEeEE
Q 020493          278 EGDRMLVGDV-PWHMFVSTVTRLRV  301 (325)
Q Consensus       278 EGDwMLVGDV-PWemFv~SvKRLrI  301 (325)
                      ||||..+-+. =+++=++...||.+
T Consensus        58 dgd~v~i~sD~Dl~~ai~~~~kl~v   82 (85)
T d1ip9a_          58 DGSGEEIKTDSQVSNIIQAKLKISV   82 (85)
T ss_dssp             SSCCSCCCSHHHHHHHHHTTCCEEE
T ss_pred             CCCEEEEeCHHHHHHHHHhcCcEEE
Confidence            9999876553 45555554444443

>d1wmhb_ d.15.2.2 (B:) Partitioning defective-6 homolog alpha, PAR-6 alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Partitioning defective-6 homolog alpha, PAR-6 alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.09  E-value=1.3  Score=33.38  Aligned_cols=67  Identities=15%  Similarity=0.157  Sum_probs=46.5

Q ss_pred             eEEEecCcccceeecCCCCCChHHHHHHHHHHHhhhhhcccCCCCCcccchhhhhHhhhcCCCCCCCeEEEEecCCCCeE
Q 020493          203 VKINMDGVPIGRKVDLNAYDSYEKLSAAVDELFRGLLAAQRDSSAGGIVNKQEEEKAITGVLDGSGEYTLVYEDNEGDRM  282 (325)
Q Consensus       203 VKV~MDGvpIGRKVDL~~y~sYeeLs~aLe~MF~~~~~~q~~~s~~~~~~~~~e~k~i~~lldgs~eyvltYEDkEGDwM  282 (325)
                      ||=..|..=-=-.+|.+...+|++.+.-|+.|..-                           . .-+|+|.|.|..||.+
T Consensus         5 VKSKFdAEfRRFsl~r~~~~~fe~F~~Lle~~H~l---------------------------~-~~~f~i~Y~D~hgDLL   56 (82)
T d1wmhb_           5 VKSKFDAEFRRFALPRASVSGFQEFSRLLRAVHQI---------------------------P-GLDVLLGYTDAHGDLL   56 (82)
T ss_dssp             EEEEETTEEEEEEEEGGGCCCHHHHHHHHHHHTTC---------------------------T-TCCCEEEEECTTSCEE
T ss_pred             eecccCceEEEeeeccccccCHHHHHHHHHHHcCC---------------------------C-CCcEEEEEecCCCCcc
Confidence            44444443223367888899999999999998851                           1 1379999999999999


Q ss_pred             ecCCc-ChhHHhhcce
Q 020493          283 LVGDV-PWHMFVSTVT  297 (325)
Q Consensus       283 LVGDV-PWemFv~SvK  297 (325)
                      =+-.. -+.-=++|++
T Consensus        57 PINNDdNf~kA~~sa~   72 (82)
T d1wmhb_          57 PLTNDDSLHRALASGP   72 (82)
T ss_dssp             ECCSHHHHHHHTTSSS
T ss_pred             cccCchHHHHHHHhcC
Confidence            77654 3334445665