Citrus Sinensis ID: 020509

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-----
MKVQRLPNSKTKMAFAAIIMKKAFHSASGQLSNSPQGICNVRMSGEELLSRLLDRKWALTSPDSKIHQIKLFTTTEKHGGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGKVTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLVLIPGSFTWKKKGYKICCGCWYWDNSCWFRSWSHMFRASMGGNCNSIGGYN
ccccccccccHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEccccccccccHHHHHHHHcccHHHHccccEEEEEccccHHHHHHHHHHHHHHcccEEEEEcccccccccHHHHHHHHcccEEEEccccHHHHHHHHHHHHHHHHHcccccEEEEccccccHHHHHHHHHHHHHHHHHHccccccccEEEEEcccHHHHHHHHHHccccccccEEEEEEEccccccccHHHHHHHHHHHHccccccccccccc
ccEEEccccccEEEEEEHHHHHcccccccccccccccccccccccHHHHHHHHccccccccccccEEEEEEEcccccccccccHHHHHccccccccccccHHcccccEEEEEEcccccccccccHHHHHHHHHHHHHHccccEEEEEccHcHHHHHHHHHHHHHccccEEEEEEcccccccccHHHHHHHcccEEEEcHHHHHHHHHHHHHHHHHHHcccccEEEEccccccccccccccccccEEccccccccccccEEEEEEccccHHHHHHHHHHHHHccccEEEEEcccccEEcHHHHHHHcccccccccccccccccccc
mkvqrlpnskTKMAFAAIIMKKAFhsasgqlsnspqgicNVRMSGEELLSRLLDRkwaltspdskihQIKLFTttekhgggplggisflnntcpflgddmimrdedrcfyvvrddllhplvngnkarkMDALLPLledhivtdlvtcggcqsahATAVAVSCAERGLKShlllrgeqpqiltgynLISTIygkvtyvprthyAHRIEMLKSYANLvagnngdvvwCNEIFEASLTAQKSRASclgqmdahkgidncRKKVLIVNEGAGDAVALLVLIpgsftwkkkgykiccgcwywdnscwfrswSHMFRAsmggncnsiggyn
mkvqrlpnsktKMAFAAIIMKKAFHSASGQLSNSPQGICNVRMSGEELLSRLLDRKWAltspdskihqIKLFTTTEKHGGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIVTDLVTCGGCQSAHATAVAVSCAERGLKSHlllrgeqpqilTGYNLISTIYGKVTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLVLIPGSFTWKKKGYKICCGCWYWDNSCWFRSWSHMFRASmggncnsiggyn
MKVQRLPNSktkmafaaiimkkafHSASGQLSNSPQGICNVRMSGEELLSRLLDRKWALTSPDSKIHQIKLFTTTEKHGGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGKVTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLVLIPGSFTWKKKGYKICCGCWYWDNSCWFRSWSHMFRASMGGNCNSIGGYN
*************AFAAIIMKKAF************GICNVRMSGEELLSRLLDRKWALTSPDSKIHQIKLFTTTEKHGGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGKVTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLVLIPGSFTWKKKGYKICCGCWYWDNSCWFRSWSHMFRASMGGNC*******
**************FAA******************************LLSRLLDRKWALTSPDSKIHQ*****************ISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGKVTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLVLIPGSFTWKKKGYKICCGCWYWDNSCWFRSWSHMFRASMGGNCNSIGG**
*********KTKMAFAAIIMKKAFH********SPQGICNVRMSGEELLSRLLDRKWALTSPDSKIHQIKLFTTTEKHGGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGKVTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLVLIPGSFTWKKKGYKICCGCWYWDNSCWFRSWSHMFRASMGGNCNSIGGYN
*KVQRLPNSKTKMAFAAIIMKKAFHSASGQLSNSPQGICNVRMSGEELLSRLLDRKWALTSPDSKIHQIKLFTTTEKHGGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGKVTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLVLIPGSFTWKKKGYKICCGCWYWDNSCWFRSWSHMFRASMGGNCNSIGGYN
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MKVQRLPNSKTKMAFAAIIMKKAFHSASGQLSNSPQGICNVRMSGEELLSRLLDRKWALTSPDSKIHQIKLFTTTEKHGGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGKVTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLVLIPGSFTWKKKGYKICCGCWYWDNSCWFRSWSHMFRASMGGNCNSIGGYN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query325 2.2.26 [Sep-21-2011]
Q9WY68312 Putative 1-aminocycloprop yes no 0.249 0.259 0.428 5e-06
Q8U4R3329 Putative 1-aminocycloprop yes no 0.353 0.349 0.318 0.0001
Q9V2L2330 Putative 1-aminocycloprop yes no 0.292 0.287 0.340 0.0002
O57809325 Putative 1-aminocycloprop yes no 0.363 0.363 0.303 0.0008
>sp|Q9WY68|1A1D_THEMA Putative 1-aminocyclopropane-1-carboxylate deaminase OS=Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099) GN=TM_0225 PE=3 SV=1 Back     alignment and function desciption
 Score = 52.4 bits (124), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 36/84 (42%), Positives = 45/84 (53%), Gaps = 3/84 (3%)

Query: 110 YVVRDDLLHPLVNGNKARKMDALLPLLEDHIVTDLVTCGGCQSAHATAVAVSCAERGLKS 169
           YV RDDL   + +GNK RK++ LL        T + TCGG QS HA A A      GLK 
Sbjct: 27  YVKRDDLTELVGSGNKIRKLEYLLWEALKKGATTVFTCGGLQSNHARATAYVSRRYGLKP 86

Query: 170 HLLLR-GEQPQILTGYNLISTIYG 192
            L LR GE  ++L G  L+  + G
Sbjct: 87  VLFLRKGE--KVLNGNLLLDILLG 108

Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099) (taxid: 243274)
EC: 3EC: .EC: 5EC: .EC: 9EC: 9EC: .EC: 7
>sp|Q8U4R3|1A1D_PYRFU Putative 1-aminocyclopropane-1-carboxylate deaminase OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=PF0010 PE=3 SV=2 Back     alignment and function description
>sp|Q9V2L2|1A1D_PYRAB Putative 1-aminocyclopropane-1-carboxylate deaminase OS=Pyrococcus abyssi (strain GE5 / Orsay) GN=PYRAB00630 PE=3 SV=1 Back     alignment and function description
>sp|O57809|1A1D_PYRHO Putative 1-aminocyclopropane-1-carboxylate deaminase OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) GN=PH0054 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query325
255547974 442 trytophan synthase alpha subunit, putati 0.806 0.592 0.596 3e-76
11994254 572 unnamed protein product [Arabidopsis tha 0.775 0.440 0.543 3e-74
42565200 427 Pyridoxal-5'-phosphate-dependent enzyme 0.775 0.590 0.543 8e-74
42572535 433 Pyridoxal-5'-phosphate-dependent enzyme 0.775 0.581 0.543 9e-74
225424574 455 PREDICTED: putative 1-aminocyclopropane- 0.750 0.536 0.619 3e-73
296081397 488 unnamed protein product [Vitis vinifera] 0.750 0.5 0.619 4e-73
357463189 437 hypothetical protein MTR_3g086360 [Medic 0.88 0.654 0.480 5e-69
356538123 432 PREDICTED: putative 1-aminocyclopropane- 0.763 0.574 0.521 6e-69
224107725391 predicted protein [Populus trichocarpa] 0.676 0.562 0.675 3e-68
297814852408 hypothetical protein ARALYDRAFT_484377 [ 0.716 0.571 0.510 3e-66
>gi|255547974|ref|XP_002515044.1| trytophan synthase alpha subunit, putative [Ricinus communis] gi|223546095|gb|EEF47598.1| trytophan synthase alpha subunit, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  291 bits (745), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 164/275 (59%), Positives = 202/275 (73%), Gaps = 13/275 (4%)

Query: 1   MKVQRLPNSKTKMAFAAIIMKKAFHSASGQLSNSPQGICNVRMSGEELLSRLLDRKWALT 60
           MK+QR  + KT    A   MK ++HS S       QG+  V++S E+L+S LL+RKW L 
Sbjct: 1   MKLQRW-SCKT----AITSMKCSYHSGS-------QGLSEVKLSSEKLMSNLLNRKWMLQ 48

Query: 61  SPDSKIHQIKLFTTTEKHGGGPLGGISFLNNTCPFLGDDMIMRDEDR-CFYVVRDDLLHP 119
            P+++IHQI+L      H  G  G +SFLN++ PF GD M+ +D     FY+VRDDLLHP
Sbjct: 49  LPNTEIHQIRLSLAQGLHREGLFGDMSFLNDSHPFFGDHMMKKDSRHPSFYIVRDDLLHP 108

Query: 120 LVNGNKARKMDALLPLLEDHIVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQPQ 179
           LVNGNKARK+D L+PLL +H VTD+VTCGGCQSAHA AVAVSCAE GLKSHLLLRGEQP+
Sbjct: 109 LVNGNKARKLDGLIPLLVNHSVTDVVTCGGCQSAHAAAVAVSCAEIGLKSHLLLRGEQPE 168

Query: 180 ILTGYNLISTIYGKVTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTAQKS 239
           +LTGYNLIS++YGKVTYVPR  YAHR  MLK +A+LVAGNNG V+WCN+I E   T+Q  
Sbjct: 169 VLTGYNLISSVYGKVTYVPRHLYAHRESMLKIHADLVAGNNGQVLWCNDILETIFTSQTY 228

Query: 240 RASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALL 274
            +  +  MDA K ++N  K+VLIVNEGAGD VALL
Sbjct: 229 SSLDMRTMDACKNVENHSKRVLIVNEGAGDVVALL 263

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|11994254|dbj|BAB01437.1| unnamed protein product [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|42565200|ref|NP_189241.3| Pyridoxal-5'-phosphate-dependent enzyme family protein [Arabidopsis thaliana] gi|119935856|gb|ABM06014.1| At3g26115 [Arabidopsis thaliana] gi|332643599|gb|AEE77120.1| Pyridoxal-5'-phosphate-dependent enzyme family protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|42572535|ref|NP_974363.1| Pyridoxal-5'-phosphate-dependent enzyme family protein [Arabidopsis thaliana] gi|110737454|dbj|BAF00671.1| hypothetical protein [Arabidopsis thaliana] gi|332643600|gb|AEE77121.1| Pyridoxal-5'-phosphate-dependent enzyme family protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|225424574|ref|XP_002282104.1| PREDICTED: putative 1-aminocyclopropane-1-carboxylate deaminase-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|296081397|emb|CBI16830.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|357463189|ref|XP_003601876.1| hypothetical protein MTR_3g086360 [Medicago truncatula] gi|355490924|gb|AES72127.1| hypothetical protein MTR_3g086360 [Medicago truncatula] Back     alignment and taxonomy information
>gi|356538123|ref|XP_003537554.1| PREDICTED: putative 1-aminocyclopropane-1-carboxylate deaminase-like [Glycine max] Back     alignment and taxonomy information
>gi|224107725|ref|XP_002314578.1| predicted protein [Populus trichocarpa] gi|222863618|gb|EEF00749.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297814852|ref|XP_002875309.1| hypothetical protein ARALYDRAFT_484377 [Arabidopsis lyrata subsp. lyrata] gi|297321147|gb|EFH51568.1| hypothetical protein ARALYDRAFT_484377 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query325
TAIR|locus:2090345 433 AT3G26115 [Arabidopsis thalian 0.676 0.508 0.599 2.4e-67
TAIR|locus:2090345 AT3G26115 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 684 (245.8 bits), Expect = 2.4e-67, P = 2.4e-67
 Identities = 139/232 (59%), Positives = 168/232 (72%)

Query:    43 MSGEELLSRLLDRKWALTSPDSKIHQIKLFTTTEKHGGGPLGGISFLNNTCPFLGDDMIM 102
             +   E +S+LLDRKW L  P S I QI + +     G   +   SFLNNT P LGD+M  
Sbjct:    33 IDSREFVSKLLDRKWGLQCPASPIQQISVSSVK---G---IDKFSFLNNTRPHLGDEMSK 86

Query:   103 RDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIVTDLVTCGGCQSAHATAVAVSC 162
               +   FY++RDDLLHPLVNGNKARK+DALLPL+EDH VTDLVTCGGCQSAH  AVAVSC
Sbjct:    87 SKQGSSFYILRDDLLHPLVNGNKARKLDALLPLVEDHKVTDLVTCGGCQSAHTAAVAVSC 146

Query:   163 AERGLKSHLLLRGEQPQILTGYNLISTIYGKVTYVPRTHYAHRIEMLKSYANLVAGNNGD 222
             AERGL+SHLLLRGEQP +LTGYNL+ST+YG V YVPR+ YA+R EML++YA+LVAG +G 
Sbjct:   147 AERGLRSHLLLRGEQPDVLTGYNLVSTMYGNVQYVPRSRYANREEMLRTYADLVAGEDGT 206

Query:   223 VVWCNEIFEASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALL 274
             V+W  +I E   T        + +MD    +   R+KVLIVNEGAGDA+ALL
Sbjct:   207 VLWAKDIVEGRDTMN------VAKMDDFSSMKTSRRKVLIVNEGAGDALALL 252


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.136   0.438    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      325       310   0.00079  116 3  11 22  0.37    34
                                                     33  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  619 (66 KB)
  Total size of DFA:  251 KB (2134 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  22.77u 0.11s 22.88t   Elapsed:  00:00:01
  Total cpu time:  22.77u 0.11s 22.88t   Elapsed:  00:00:01
  Start:  Tue May 21 04:12:17 2013   End:  Tue May 21 04:12:18 2013
GO:0003824 "catalytic activity" evidence=IEA
GO:0005575 "cellular_component" evidence=ND
GO:0008152 "metabolic process" evidence=IEA
GO:0030170 "pyridoxal phosphate binding" evidence=IEA

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
AT3G26115
catalytic/ pyridoxal phosphate binding; catalytic/ pyridoxal phosphate binding; FUNCTIONS IN- pyridoxal phosphate binding, catalytic activity; INVOLVED IN- metabolic process; LOCATED IN- cellular_component unknown; CONTAINS InterPro DOMAIN/s- Pyridoxal phosphate-dependent enzyme, beta subunit (InterPro-IPR001926); BEST Arabidopsis thaliana protein match is- D-CDES (D-CYSTEINE DESULFHYDRASE); 1-aminocyclopropane-1-carboxylate deaminase/ D-cysteine desulfhydrase/ catalytic (TAIR-AT1G48420.1); Has 1208 Blast hits to 1208 proteins in 458 species- Archae - 29; Bacteria - 836; Metazoa - 29; [...] (433 aa)
(Arabidopsis thaliana)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query325
COG2515323 COG2515, Acd, 1-aminocyclopropane-1-carboxylate de 8e-15
PRK03910331 PRK03910, PRK03910, D-cysteine desulfhydrase; Vali 3e-10
TIGR01275318 TIGR01275, ACC_deam_rel, pyridoxal phosphate-depen 3e-09
cd06449307 cd06449, ACCD, Aminocyclopropane-1-carboxylate dea 1e-08
PRK14045329 PRK14045, PRK14045, 1-aminocyclopropane-1-carboxyl 4e-06
TIGR01274337 TIGR01274, ACC_deam, 1-aminocyclopropane-1-carboxy 1e-04
PRK12390337 PRK12390, PRK12390, 1-aminocyclopropane-1-carboxyl 0.004
>gnl|CDD|225313 COG2515, Acd, 1-aminocyclopropane-1-carboxylate deaminase [Amino acid transport and metabolism] Back     alignment and domain information 
 Score = 73.5 bits (181), Expect = 8e-15
 Identities = 32/85 (37%), Positives = 40/85 (47%), Gaps = 1/85 (1%)

Query: 109 FYVVRDDLLHPLVNGNKARKMDALLPLLEDHIVTDLVTCGGCQSAHATAVAVSCAERGLK 168
            Y+ RDDL      GNK RK++ LL          LVT GG QS H    A   A+ GLK
Sbjct: 32  IYIKRDDLTGLAFGGNKIRKLEFLLGEALRKGADTLVTYGGIQSNHVRQTAAVAAKLGLK 91

Query: 169 SHLLLRGEQPQILTGYN-LISTIYG 192
             L+L   +   L   N L+S + G
Sbjct: 92  CVLILENIEANYLLNGNLLLSKLMG 116

Length = 323
>gnl|CDD|179673 PRK03910, PRK03910, D-cysteine desulfhydrase; Validated Back     alignment and domain information
>gnl|CDD|233338 TIGR01275, ACC_deam_rel, pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family Back     alignment and domain information
>gnl|CDD|107210 cd06449, ACCD, Aminocyclopropane-1-carboxylate deaminase (ACCD): Pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of 1-aminocyclopropane-L-carboxylate (ACC), a precursor of the plant hormone ethylene, to alpha-ketobutyrate and ammonia Back     alignment and domain information
>gnl|CDD|172537 PRK14045, PRK14045, 1-aminocyclopropane-1-carboxylate deaminase; Provisional Back     alignment and domain information
>gnl|CDD|130341 TIGR01274, ACC_deam, 1-aminocyclopropane-1-carboxylate deaminase Back     alignment and domain information
>gnl|CDD|183494 PRK12390, PRK12390, 1-aminocyclopropane-1-carboxylate deaminase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 325
COG2515 323 Acd 1-aminocyclopropane-1-carboxylate deaminase [A 100.0
COG0133 396 TrpB Tryptophan synthase beta chain [Amino acid tr 100.0
KOG1395 477 consensus Tryptophan synthase beta chain [Amino ac 99.97
PRK04346 397 tryptophan synthase subunit beta; Validated 99.95
PRK14045329 1-aminocyclopropane-1-carboxylate deaminase; Provi 99.94
PLN02618 410 tryptophan synthase, beta chain 99.94
TIGR01274337 ACC_deam 1-aminocyclopropane-1-carboxylate deamina 99.93
TIGR01275311 ACC_deam_rel pyridoxal phosphate-dependent enzymes 99.93
PRK13028 402 tryptophan synthase subunit beta; Provisional 99.93
PRK12390337 1-aminocyclopropane-1-carboxylate deaminase; Provi 99.93
cd06449307 ACCD Aminocyclopropane-1-carboxylate deaminase (AC 99.91
PRK03910331 D-cysteine desulfhydrase; Validated 99.91
PRK13803 610 bifunctional phosphoribosylanthranilate isomerase/ 99.91
PRK13802 695 bifunctional indole-3-glycerol phosphate synthase/ 99.89
cd01561291 CBS_like CBS_like: This subgroup includes Cystathi 99.76
TIGR00263385 trpB tryptophan synthase, beta subunit. Tryptophan 99.76
PF00291306 PALP: Pyridoxal-phosphate dependent enzyme; InterP 99.73
cd00640244 Trp-synth-beta_II Tryptophan synthase beta superfa 99.73
cd06446365 Trp-synth_B Tryptophan synthase-beta: Trptophan sy 99.73
PRK06381319 threonine synthase; Validated 99.72
PRK06721352 threonine synthase; Reviewed 99.7
cd01563324 Thr-synth_1 Threonine synthase is a pyridoxal phos 99.69
PRK12391 427 tryptophan synthase subunit beta; Reviewed 99.69
TIGR01415 419 trpB_rel pyridoxal-phosphate dependent TrpB-like e 99.68
cd06448316 L-Ser-dehyd Serine dehydratase is a pyridoxal phos 99.68
PRK10717330 cysteine synthase A; Provisional 99.66
TIGR01136299 cysKM cysteine synthases. This model discriminates 99.65
PRK07476322 eutB threonine dehydratase; Provisional 99.65
PLN00011323 cysteine synthase 99.64
cd01562304 Thr-dehyd Threonine dehydratase: The first step in 99.64
PRK06352351 threonine synthase; Validated 99.64
PLN02556368 cysteine synthase/L-3-cyanoalanine synthase 99.62
TIGR01137 454 cysta_beta cystathionine beta-synthase. Members of 99.62
TIGR01139298 cysK cysteine synthase A. This model distinguishes 99.61
TIGR00260328 thrC threonine synthase. Involved in threonine bio 99.6
COG1350 432 Predicted alternative tryptophan synthase beta-sub 99.6
PRK07409353 threonine synthase; Validated 99.58
TIGR01138290 cysM cysteine synthase B. Alternate name: O-acetyl 99.58
PRK06110322 hypothetical protein; Provisional 99.57
PRK06608338 threonine dehydratase; Provisional 99.56
PRK08246310 threonine dehydratase; Provisional 99.55
PRK08197394 threonine synthase; Validated 99.54
PRK11761296 cysM cysteine synthase B; Provisional 99.54
PRK07591 421 threonine synthase; Validated 99.52
PRK08206 399 diaminopropionate ammonia-lyase; Provisional 99.51
PRK06260 397 threonine synthase; Validated 99.49
PRK07048321 serine/threonine dehydratase; Validated 99.48
PRK05638 442 threonine synthase; Validated 99.47
TIGR02991317 ectoine_eutB ectoine utilization protein EutB. Mem 99.45
TIGR02079 409 THD1 threonine dehydratase. This model represents 99.45
PRK08329347 threonine synthase; Validated 99.45
PRK08198 404 threonine dehydratase; Provisional 99.43
PRK06815317 hypothetical protein; Provisional 99.41
PRK06382 406 threonine dehydratase; Provisional 99.41
PRK09224 504 threonine dehydratase; Reviewed 99.41
TIGR01127 380 ilvA_1Cterm threonine dehydratase, medium form. A 99.4
PRK12483 521 threonine dehydratase; Reviewed 99.36
PRK08526 403 threonine dehydratase; Provisional 99.36
TIGR01124 499 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, 99.35
PRK08638333 threonine dehydratase; Validated 99.35
PLN02970328 serine racemase 99.31
PRK07334 403 threonine dehydratase; Provisional 99.27
PLN02550 591 threonine dehydratase 99.23
TIGR03528 396 2_3_DAP_am_ly diaminopropionate ammonia-lyase. Mem 99.2
PRK08639 420 threonine dehydratase; Validated 99.19
TIGR01747 376 diampropi_NH3ly diaminopropionate ammonia-lyase fa 99.13
COG1171347 IlvA Threonine dehydratase [Amino acid transport a 99.07
PLN02356 423 phosphateglycerate kinase 99.05
PRK06450338 threonine synthase; Validated 98.94
PRK02991 441 D-serine dehydratase; Provisional 98.91
KOG1250 457 consensus Threonine/serine dehydratases [Amino aci 98.87
PLN02565322 cysteine synthase 98.82
PRK08813349 threonine dehydratase; Provisional 98.79
PLN03013429 cysteine synthase 98.79
PLN02569 484 threonine synthase 98.76
cd06447404 D-Ser-dehyd D-Serine dehydratase is a pyridoxal ph 98.75
TIGR03844 398 cysteate_syn cysteate synthase. Members of this fa 98.75
TIGR02035431 D_Ser_am_lyase D-serine ammonia-lyase. This family 98.57
KOG1251323 consensus Serine racemase [Signal transduction mec 98.18
COG0031300 CysK Cysteine synthase [Amino acid transport and m 97.82
COG0498 411 ThrC Threonine synthase [Amino acid transport and 96.49
KOG1481 391 consensus Cysteine synthase [Amino acid transport 96.17
KOG1252362 consensus Cystathionine beta-synthase and related 93.43
PF06415223 iPGM_N: BPG-independent PGAM N-terminus (iPGM_N); 91.56
TIGR01307 501 pgm_bpd_ind 2,3-bisphosphoglycerate-independent ph 87.23
PRK05434 507 phosphoglyceromutase; Provisional 84.73
PRK09225 462 threonine synthase; Validated 80.12
>COG2515 Acd 1-aminocyclopropane-1-carboxylate deaminase [Amino acid transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=6e-44  Score=340.77  Aligned_cols=179  Identities=24%  Similarity=0.238  Sum_probs=153.6

Q ss_pred             CccceeeccccccCCCCCCCccccccCCCCcCccCCCCccCCCCeEEEEecCCCCCCCCChhHhhHHhhHHHhhhCCCCe
Q 020509           64 SKIHQIKLFTTTEKHGGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIVTD  143 (325)
Q Consensus        64 ~~I~~~~l~~~~~~~~~g~~~pi~~l~~~tp~l~~~~Ls~~~G~~l~IKRDDL~h~~lgGNK~RKLeylL~dA~~~G~~~  143 (325)
                      ++.||++|.|.        |+||++++|+|         ++.|++|||||||++|+.+||||+|||||+|+||+++|+|+
T Consensus         4 ~rf~R~~l~~~--------pTPiq~L~rls---------~~lg~eiYiKRDD~t~l~~gGNK~RKLefll~eal~~g~dT   66 (323)
T COG2515           4 SRFPRMELIFG--------PTPIQKLPRLS---------AHLGVEIYIKRDDLTGLAFGGNKIRKLEFLLGEALRKGADT   66 (323)
T ss_pred             ccCCccccCCC--------CChhhhHHHHH---------HhcCeEEEEEcccccccccCccHHHHHHHHHhhhhhcCCcE
Confidence            57899998887        56899999874         44578999999999999999999999999999999999999


Q ss_pred             EEEeCcccchHHHHHHHHHHHhCCeEEEEecccc-CCccchhhHHHHhCC-eEEEECCCCccchHHHHHHHHHHhccccc
Q 020509          144 LVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQ-PQILTGYNLISTIYG-KVTYVPRTHYAHRIEMLKSYANLVAGNNG  221 (325)
Q Consensus       144 LVT~GG~QSNH~~AtAaaAa~lGLkcvlvlrge~-~~~~tGN~ll~~LlG-~V~~V~r~~y~~kda~~e~~~~~~~GasG  221 (325)
                      |||+||+||||+++||++|+++|++|++++++++ .-...||.++++++| +++.++.+.+.-.+.-.+..         
T Consensus        67 lvT~GgiQSNh~r~tAavA~~lGl~~v~ile~~~~~y~~ngn~Ll~~l~G~~~~~~~~~~d~~~~~~~~~~---------  137 (323)
T COG2515          67 LVTYGGIQSNHVRQTAAVAAKLGLKCVLILENIEANYLLNGNLLLSKLMGAEVRAVDAGTDIGINASAEEL---------  137 (323)
T ss_pred             EEEecccchhHHHHHHHHHHhcCCcEEEEEeccccccccccchhhhhhcCceEEEecCCCChhhchhhHHH---------
Confidence            9999999999999999999999999999999877 225689999999999 99999998753211111111         


Q ss_pred             chhhHHHHHHHHHHHhhhhhccccccchhhhhhccCCcEEEEeCCCcchhhhhhhccccccccc------ccceEEeeec
Q 020509          222 DVVWCNEIFEASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLVLIPGSFTWKK------KGYKICCGCW  295 (325)
Q Consensus       222 ~vr~~~eI~~qe~~~q~~~~~~~~~~d~~~~l~~~g~~~y~ip~GGSnaiG~lGyi~~~~e~~~------~~~~~~~~~~  295 (325)
                                                  .++++++|.|||+||+||+|++|.+|||+++.|++.      +.|.|||+||
T Consensus       138 ----------------------------~e~~~~~g~kpyvIp~GG~~~~g~lGyv~~a~Ei~~Q~~~~~~fD~vVva~g  189 (323)
T COG2515         138 ----------------------------AEEVRKQGGKPYVIPEGGSSPLGALGYVRLALEIAEQAEQLLKFDSVVVAPG  189 (323)
T ss_pred             ----------------------------HHHHHhcCCCCcEeccCCcCccccccHHHHHHHHHHHHhhccCCCEEEEeCC
Confidence                                        245778899999999999999999999999999983      4567888886


Q ss_pred             c
Q 020509          296 Y  296 (325)
Q Consensus       296 ~  296 (325)
                      -
T Consensus       190 s  190 (323)
T COG2515         190 S  190 (323)
T ss_pred             C
Confidence            3

>COG0133 TrpB Tryptophan synthase beta chain [Amino acid transport and metabolism] Back     alignment and domain information
>KOG1395 consensus Tryptophan synthase beta chain [Amino acid transport and metabolism] Back     alignment and domain information
>PRK04346 tryptophan synthase subunit beta; Validated Back     alignment and domain information
>PRK14045 1-aminocyclopropane-1-carboxylate deaminase; Provisional Back     alignment and domain information
>PLN02618 tryptophan synthase, beta chain Back     alignment and domain information
>TIGR01274 ACC_deam 1-aminocyclopropane-1-carboxylate deaminase Back     alignment and domain information
>TIGR01275 ACC_deam_rel pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family Back     alignment and domain information
>PRK13028 tryptophan synthase subunit beta; Provisional Back     alignment and domain information
>PRK12390 1-aminocyclopropane-1-carboxylate deaminase; Provisional Back     alignment and domain information
>cd06449 ACCD Aminocyclopropane-1-carboxylate deaminase (ACCD): Pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of 1-aminocyclopropane-L-carboxylate (ACC), a precursor of the plant hormone ethylene, to alpha-ketobutyrate and ammonia Back     alignment and domain information
>PRK03910 D-cysteine desulfhydrase; Validated Back     alignment and domain information
>PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional Back     alignment and domain information
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional Back     alignment and domain information
>cd01561 CBS_like CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase Back     alignment and domain information
>TIGR00263 trpB tryptophan synthase, beta subunit Back     alignment and domain information
>PF00291 PALP: Pyridoxal-phosphate dependent enzyme; InterPro: IPR001926 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal) Back     alignment and domain information
>cd00640 Trp-synth-beta_II Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions Back     alignment and domain information
>cd06446 Trp-synth_B Tryptophan synthase-beta: Trptophan synthase is a bifunctional enzyme that catalyses the last two steps in the biosynthesis of L-tryptophan via its alpha and beta reactions Back     alignment and domain information
>PRK06381 threonine synthase; Validated Back     alignment and domain information
>PRK06721 threonine synthase; Reviewed Back     alignment and domain information
>cd01563 Thr-synth_1 Threonine synthase is a pyridoxal phosphate (PLP) dependent enzyme that catalyses the last reaction in the synthesis of threonine from aspartate Back     alignment and domain information
>PRK12391 tryptophan synthase subunit beta; Reviewed Back     alignment and domain information
>TIGR01415 trpB_rel pyridoxal-phosphate dependent TrpB-like enzyme Back     alignment and domain information
>cd06448 L-Ser-dehyd Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- , D-serine, or L-threonine to pyruvate/ketobutyrate and ammonia Back     alignment and domain information
>PRK10717 cysteine synthase A; Provisional Back     alignment and domain information
>TIGR01136 cysKM cysteine synthases Back     alignment and domain information
>PRK07476 eutB threonine dehydratase; Provisional Back     alignment and domain information
>PLN00011 cysteine synthase Back     alignment and domain information
>cd01562 Thr-dehyd Threonine dehydratase: The first step in amino acid degradation is the removal of nitrogen Back     alignment and domain information
>PRK06352 threonine synthase; Validated Back     alignment and domain information
>PLN02556 cysteine synthase/L-3-cyanoalanine synthase Back     alignment and domain information
>TIGR01137 cysta_beta cystathionine beta-synthase Back     alignment and domain information
>TIGR01139 cysK cysteine synthase A Back     alignment and domain information
>TIGR00260 thrC threonine synthase Back     alignment and domain information
>COG1350 Predicted alternative tryptophan synthase beta-subunit (paralog of TrpB) [General function prediction only] Back     alignment and domain information
>PRK07409 threonine synthase; Validated Back     alignment and domain information
>TIGR01138 cysM cysteine synthase B Back     alignment and domain information
>PRK06110 hypothetical protein; Provisional Back     alignment and domain information
>PRK06608 threonine dehydratase; Provisional Back     alignment and domain information
>PRK08246 threonine dehydratase; Provisional Back     alignment and domain information
>PRK08197 threonine synthase; Validated Back     alignment and domain information
>PRK11761 cysM cysteine synthase B; Provisional Back     alignment and domain information
>PRK07591 threonine synthase; Validated Back     alignment and domain information
>PRK08206 diaminopropionate ammonia-lyase; Provisional Back     alignment and domain information
>PRK06260 threonine synthase; Validated Back     alignment and domain information
>PRK07048 serine/threonine dehydratase; Validated Back     alignment and domain information
>PRK05638 threonine synthase; Validated Back     alignment and domain information
>TIGR02991 ectoine_eutB ectoine utilization protein EutB Back     alignment and domain information
>TIGR02079 THD1 threonine dehydratase Back     alignment and domain information
>PRK08329 threonine synthase; Validated Back     alignment and domain information
>PRK08198 threonine dehydratase; Provisional Back     alignment and domain information
>PRK06815 hypothetical protein; Provisional Back     alignment and domain information
>PRK06382 threonine dehydratase; Provisional Back     alignment and domain information
>PRK09224 threonine dehydratase; Reviewed Back     alignment and domain information
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form Back     alignment and domain information
>PRK12483 threonine dehydratase; Reviewed Back     alignment and domain information
>PRK08526 threonine dehydratase; Provisional Back     alignment and domain information
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form Back     alignment and domain information
>PRK08638 threonine dehydratase; Validated Back     alignment and domain information
>PLN02970 serine racemase Back     alignment and domain information
>PRK07334 threonine dehydratase; Provisional Back     alignment and domain information
>PLN02550 threonine dehydratase Back     alignment and domain information
>TIGR03528 2_3_DAP_am_ly diaminopropionate ammonia-lyase Back     alignment and domain information
>PRK08639 threonine dehydratase; Validated Back     alignment and domain information
>TIGR01747 diampropi_NH3ly diaminopropionate ammonia-lyase family Back     alignment and domain information
>COG1171 IlvA Threonine dehydratase [Amino acid transport and metabolism] Back     alignment and domain information
>PLN02356 phosphateglycerate kinase Back     alignment and domain information
>PRK06450 threonine synthase; Validated Back     alignment and domain information
>PRK02991 D-serine dehydratase; Provisional Back     alignment and domain information
>KOG1250 consensus Threonine/serine dehydratases [Amino acid transport and metabolism] Back     alignment and domain information
>PLN02565 cysteine synthase Back     alignment and domain information
>PRK08813 threonine dehydratase; Provisional Back     alignment and domain information
>PLN03013 cysteine synthase Back     alignment and domain information
>PLN02569 threonine synthase Back     alignment and domain information
>cd06447 D-Ser-dehyd D-Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- or D-serine to pyruvate and ammonia Back     alignment and domain information
>TIGR03844 cysteate_syn cysteate synthase Back     alignment and domain information
>TIGR02035 D_Ser_am_lyase D-serine ammonia-lyase Back     alignment and domain information
>KOG1251 consensus Serine racemase [Signal transduction mechanisms; Amino acid transport and metabolism] Back     alignment and domain information
>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism] Back     alignment and domain information
>COG0498 ThrC Threonine synthase [Amino acid transport and metabolism] Back     alignment and domain information
>KOG1481 consensus Cysteine synthase [Amino acid transport and metabolism] Back     alignment and domain information
>KOG1252 consensus Cystathionine beta-synthase and related enzymes [Amino acid transport and metabolism] Back     alignment and domain information
>PF06415 iPGM_N: BPG-independent PGAM N-terminus (iPGM_N); InterPro: IPR011258 This family represents the N-terminal region of the 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (or phosphoglyceromutase or BPG-independent PGAM) protein (5 Back     alignment and domain information
>TIGR01307 pgm_bpd_ind 2,3-bisphosphoglycerate-independent phosphoglycerate mutase Back     alignment and domain information
>PRK05434 phosphoglyceromutase; Provisional Back     alignment and domain information
>PRK09225 threonine synthase; Validated Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query325
1j0a_A325 Crystal Structure Analysis Of The Acc Deaminase Hom 6e-05
>pdb|1J0A|A Chain A, Crystal Structure Analysis Of The Acc Deaminase Homologue Length = 325 Back     alignment and structure 
Iteration: 1

 Score = 45.1 bits (105), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 40/132 (30%), Positives = 59/132 (44%), Gaps = 14/132 (10%)
Query: 86  ISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIVTDLV 145
           I +L N    +G D+         Y+ RDDL    + GNK RK++ LL          ++
Sbjct: 24  IQYLPNISREIGADV---------YIKRDDLTGLGIGGNKIRKLEYLLGDALSKGADVVI 74
Query: 146 TCGGCQSAHATAVAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGKVTYVPRTHYAHR 205
           T G   S HA    ++  + GL + L+LRG++   L G  L+  I G  T   R + A  
Sbjct: 75  TVGAVHSNHAFVTGLAAKKLGLDAILVLRGKEE--LKGNYLLDKIMGIET---RVYDAKD 129
Query: 206 IEMLKSYANLVA 217
              L  YA  +A
Sbjct: 130 SFELMKYAEEIA 141

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query325
4d9b_A342 D-cysteine desulfhydrase; fold type II PLP-depende 3e-17
1j0a_A325 1-aminocyclopropane-1-carboxylate deaminase; PLP d 1e-16
1tzj_A338 ACC deaminase, 1-aminocyclopropane-1-carboxylate d 4e-15
1f2d_A341 1-aminocyclopropane-1-carboxylate deaminase; carbo 2e-14
>4d9b_A D-cysteine desulfhydrase; fold type II PLP-dependent enzyme or tryptophan synthase BET like family, PLP dependent enzyme, lyase; HET: PMP; 1.67A {Salmonella typhimurium} PDB: 4d96_A* 4d9c_A* 4d9e_A* 4d9f_A* 4d97_A* 4d8w_A* 4d8u_A* 4d8t_A* 4d92_A* 4d99_A* Length = 342 Back     alignment and structure
 Score = 80.1 bits (197), Expect = 3e-17
 Identities = 25/123 (20%), Positives = 39/123 (31%), Gaps = 4/123 (3%)

Query: 110 YVVRDDLLHPLVNGNKARKMDALLPLLEDHIVTDLVTCGGCQSAHATAVAVSCAERGLKS 169
           Y+ RDD+    + GNK RK++ L+          L+T G  QS H    A   A+ GL  
Sbjct: 50  YIKRDDVTPIAMGGNKLRKLEFLVADALREGADTLITAGAIQSNHVRQTAAVAAKLGLHC 109

Query: 170 HLLLRGEQPQILTGYNLISTIYGKVTYVPRTHYAHRI----EMLKSYANLVAGNNGDVVW 225
             LL          Y           +  +      +      L++ A  +         
Sbjct: 110 VALLENPIGTTAENYLTNGNRLLLDLFNTQIEMCDALTDPDAQLQTLATRIEAQGFRPYV 169

Query: 226 CNE 228
              
Sbjct: 170 IPV 172
>1j0a_A 1-aminocyclopropane-1-carboxylate deaminase; PLP dependent, lyase; HET: PLP; 2.50A {Pyrococcus horikoshii} SCOP: c.79.1.1 PDB: 1j0b_A* Length = 325 Back     alignment and structure
>1tzj_A ACC deaminase, 1-aminocyclopropane-1-carboxylate deaminase; substrate, PLP, crystal, complex, hydrolase; HET: PLP; 1.99A {Pseudomonas SP} SCOP: c.79.1.1 PDB: 1rqx_A* 1tz2_A* 1tyz_A* 1tzk_A* 1tzm_A* Length = 338 Back     alignment and structure
>1f2d_A 1-aminocyclopropane-1-carboxylate deaminase; carbon-carbon L open twisted alpha/beta, lyase; HET: PLP; 2.00A {Williopsis saturnus} SCOP: c.79.1.1 PDB: 1j0e_A* 1j0d_A* 1j0c_A* Length = 341 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query325
1f2d_A341 1-aminocyclopropane-1-carboxylate deaminase; carbo 99.93
4d9b_A342 D-cysteine desulfhydrase; fold type II PLP-depende 99.93
1j0a_A325 1-aminocyclopropane-1-carboxylate deaminase; PLP d 99.93
1tzj_A338 ACC deaminase, 1-aminocyclopropane-1-carboxylate d 99.91
2o2e_A 422 Tryptophan synthase beta chain; amino-acid biosynt 99.85
1qop_B 396 Tryptophan synthase beta chain; lyase, carbon-oxyg 99.81
4aec_A430 Cysteine synthase, mitochondrial; lyase, cysteine 99.81
1wkv_A389 Cysteine synthase; homodimer, open alpha/beta fold 99.81
1x1q_A 418 Tryptophan synthase beta chain; structural genomic 99.8
4h27_A364 L-serine dehydratase/L-threonine deaminase; PLP de 99.79
3tbh_A334 O-acetyl serine sulfhydrylase; cysteine synthase, 99.77
2egu_A308 Cysteine synthase; O-acetylserine sulfhydrase, str 99.77
2rkb_A318 Serine dehydratase-like; PLP bound enzyme, enzyme 99.77
2q3b_A313 Cysteine synthase A; pyridoxal-5'-phosphate, sulph 99.76
2d1f_A360 Threonine synthase; amino acid synthesis, pyridoxa 99.76
3aey_A 351 Threonine synthase; PLP, pyridoxal phosphate, lyas 99.76
1v8z_A 388 Tryptophan synthase beta chain 1; beta+alpha, rike 99.75
2zsj_A352 Threonine synthase; PLP dependent enzyme, lyase; H 99.75
1ve1_A304 O-acetylserine sulfhydrylase; PLP, transferase, ri 99.75
1p5j_A372 L-serine dehydratase; lyase; HET: PLP; 2.50A {Homo 99.74
3dwg_A325 Cysteine synthase B; sulfur carrier protein comple 99.74
2pqm_A343 Cysteine synthase; OASS, PLP, lyase; HET: PLP; 1.8 99.74
2v03_A303 Cysteine synthase B; pyridoxal phosphate, cysteine 99.73
3l6b_A346 Serine racemase; pyridoxal phosphate, PLP, isomera 99.72
1z7w_A322 Cysteine synthase; transferase; HET: PLP; 2.20A {A 99.72
3pc3_A 527 CG1753, isoform A; CBS, synthase, PLP, heme, amino 99.7
2gn0_A342 Threonine dehydratase catabolic; TDCB, biodegradat 99.7
1y7l_A316 O-acetylserine sulfhydrylase, O-acetylserine (thio 99.69
1o58_A303 O-acetylserine sulfhydrylase; TM0665, structural g 99.66
4d9i_A 398 Diaminopropionate ammonia-lyase; fold type II PLP- 99.66
1v71_A323 Serine racemase, hypothetical protein C320.14 in c 99.62
1jbq_A435 B, cystathionine beta-synthase, serine sulfhydrase 99.61
1ve5_A311 Threonine deaminase; riken structural genomics/Pro 99.59
3vc3_A344 Beta-cyanoalnine synthase; beta-cyanoalanine synth 99.57
3iau_A366 Threonine deaminase; pyridoxal phosphate, amino-ac 99.53
3ss7_X 442 D-serine dehydratase; type II fold, ALFA,beta-elim 99.45
1tdj_A 514 Biosynthetic threonine deaminase; allostery, coope 99.3
1e5x_A 486 Threonine synthase; threonine biosynthesis, PLP en 99.29
1vb3_A 428 Threonine synthase; PLP-dependent enzyme, lyase; H 99.16
1kl7_A 514 Threonine synthase; threonine synthesis, pyridoxal 96.72
4f4f_A 468 Threonine synthase; structural genomics, niaid, na 96.72
3v7n_A 487 Threonine synthase; ssgcid, structural genomics, s 95.8
1rcu_A195 Conserved hypothetical protein VT76; structural ge 84.99
1o98_A 511 2,3-bisphosphoglycerate-independent phosphoglycera 82.35
3igz_B 561 Cofactor-independent phosphoglycerate mutase; glyc 81.55
>1f2d_A 1-aminocyclopropane-1-carboxylate deaminase; carbon-carbon L open twisted alpha/beta, lyase; HET: PLP; 2.00A {Williopsis saturnus} SCOP: c.79.1.1 PDB: 1j0e_A* 1j0d_A* 1j0c_A* Back     alignment and structure
Probab=99.93  E-value=7.6e-26  Score=213.20  Aligned_cols=113  Identities=26%  Similarity=0.273  Sum_probs=97.9

Q ss_pred             CCCCcCccCCCCccCC-C-CeEEEEecCCC-CCCCCChhHhhHHhhHHHhhhCCCCeEEEeCcccchHHHHHHHHHHHhC
Q 020509           90 NNTCPFLGDDMIMRDE-D-RCFYVVRDDLL-HPLVNGNKARKMDALLPLLEDHIVTDLVTCGGCQSAHATAVAVSCAERG  166 (325)
Q Consensus        90 ~~~tp~l~~~~Ls~~~-G-~~l~IKRDDL~-h~~lgGNK~RKLeylL~dA~~~G~~~LVT~GG~QSNH~~AtAaaAa~lG  166 (325)
                      -.+||++..++|++.. | .+||+||||++ ++..|+||.||+.++|.+|.++|+++|||+|+.++||++|+|++|+++|
T Consensus        13 ~~~TPL~~~~~l~~~~~g~~~i~~K~E~~n~p~~~Gs~K~R~a~~~l~~a~~~g~~~vv~~G~ssGN~g~alA~~a~~~G   92 (341)
T 1f2d_A           13 FGPSPISNLNRLSQHLGSKVNVYAKREDCNSGLAFGGNKLRKLEYIVPDIVEGDYTHLVSIGGRQSNQTRMVAALAAKLG   92 (341)
T ss_dssp             SSSCCEEECHHHHHHTTTCSEEEEEEGGGSCSSTTCCHHHHHHTTTHHHHHHSCCSEEEEEEETTCHHHHHHHHHHHHHT
T ss_pred             CCCCcceeHHhHHHhhCCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHHHHcCCCEEEEcCCcchHHHHHHHHHHHHhC
Confidence            3455555555566666 7 89999999996 8788999999999999999999999999999999999999999999999


Q ss_pred             CeEEEEeccccC--------CccchhhHHHHhCC-eEEEECCCCc
Q 020509          167 LKSHLLLRGEQP--------QILTGYNLISTIYG-KVTYVPRTHY  202 (325)
Q Consensus       167 Lkcvlvlrge~~--------~~~tGN~ll~~LlG-~V~~V~r~~y  202 (325)
                      ++|++||....+        ..+.+|+.+++.+| +|++++...+
T Consensus        93 ~~~~iv~p~~~~~~~~~~~~~~~~~k~~~~~~~GA~v~~~~~~~~  137 (341)
T 1f2d_A           93 KKCVLIQEDWVPIPEAEKDVYNRVGNIELSRIMGADVRVIEDGFD  137 (341)
T ss_dssp             CEEEEEEECCSCCCGGGTTTTTTSHHHHHHHHTTCEEEECCCCCC
T ss_pred             CceEEEeccCCCccccccccccccccHHHHHhCCCEEEEeCCccc
Confidence            999999987664        12367999999999 9999988655
>4d9b_A D-cysteine desulfhydrase; fold type II PLP-dependent enzyme or tryptophan synthase BET like family, PLP dependent enzyme, lyase; HET: PMP; 1.67A {Salmonella typhimurium} PDB: 4d96_A* 4d9c_A* 4d9e_A* 4d9f_A* 4d97_A* 4d8w_A* 4d8u_A* 4d8t_A* 4d92_A* 4d99_A* Back     alignment and structure
>1j0a_A 1-aminocyclopropane-1-carboxylate deaminase; PLP dependent, lyase; HET: PLP; 2.50A {Pyrococcus horikoshii} SCOP: c.79.1.1 PDB: 1j0b_A* Back     alignment and structure
>1tzj_A ACC deaminase, 1-aminocyclopropane-1-carboxylate deaminase; substrate, PLP, crystal, complex, hydrolase; HET: PLP; 1.99A {Pseudomonas SP} SCOP: c.79.1.1 PDB: 1rqx_A* 1tz2_A* 1tyz_A* 1tzk_A* 1tzm_A* Back     alignment and structure
>2o2e_A Tryptophan synthase beta chain; amino-acid biosynthesis, tryptophan biosynthesis, structural genomics; 2.20A {Mycobacterium tuberculosis} PDB: 2o2j_A Back     alignment and structure
>1qop_B Tryptophan synthase beta chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.79.1.1 PDB: 1k7e_B* 1k7f_B* 1kfb_B* 1k3u_B* 1tjp_B* 1wbj_B* 2cli_B* 2clk_B* 2cll_B* 2j9x_B* 3cep_B* 1kfc_B* 1k8x_B* 1kfj_B* 1kfk_B* 2rh9_B* 2rhg_B* 2j9y_B* 1cw2_B* 1a5s_B* ... Back     alignment and structure
>4aec_A Cysteine synthase, mitochondrial; lyase, cysteine synthesis, assimilatory sulfate reduction, S plant inorganic sulfur uptake; HET: PLP; 2.40A {Arabidopsis thaliana} Back     alignment and structure
>1wkv_A Cysteine synthase; homodimer, open alpha/beta folding, transferase; HET: PLP; 2.00A {Aeropyrum pernix} SCOP: c.79.1.1 Back     alignment and structure
>1x1q_A Tryptophan synthase beta chain; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.50A {Thermus thermophilus} Back     alignment and structure
>4h27_A L-serine dehydratase/L-threonine deaminase; PLP dependent typeii, PLP binding, liver, lyase; HET: LLP; 1.30A {Homo sapiens} PDB: 1p5j_A* 1pwh_A* 1pwe_A* Back     alignment and structure
>3tbh_A O-acetyl serine sulfhydrylase; cysteine synthase, type II PLP dependent enzyme, serine ACET transferase; HET: LLP; 1.68A {Leishmania donovani} PDB: 3spx_A* 3t4p_A* 4air_A* Back     alignment and structure
>2egu_A Cysteine synthase; O-acetylserine sulfhydrase, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; 1.90A {Geobacillus kaustophilus} Back     alignment and structure
>2rkb_A Serine dehydratase-like; PLP bound enzyme, enzyme found in human cells, lyase, pyridoxal phosphate; HET: PLP; 2.80A {Homo sapiens} Back     alignment and structure
>2q3b_A Cysteine synthase A; pyridoxal-5'-phosphate, sulphur metabolism, cysteine biosynthesis, transferase; HET: LLP; 1.80A {Mycobacterium tuberculosis} PDB: 2q3c_A* 2q3d_A* 3rr2_A Back     alignment and structure
>2d1f_A Threonine synthase; amino acid synthesis, pyridoxal-5'-phosphate, PLP, lyase; HET: PLP; 2.50A {Mycobacterium tuberculosis} Back     alignment and structure
>3aey_A Threonine synthase; PLP, pyridoxal phosphate, lyase; 1.92A {Thermus thermophilus} PDB: 1uin_A* 1uim_A* 3aex_A* 1v7c_A Back     alignment and structure
>1v8z_A Tryptophan synthase beta chain 1; beta+alpha, riken structural genomics/proteomics initiative, structural genomics, lyase; HET: PLP; 2.21A {Pyrococcus furiosus} SCOP: c.79.1.1 PDB: 1wdw_B* Back     alignment and structure
>2zsj_A Threonine synthase; PLP dependent enzyme, lyase; HET: PLP; 1.80A {Aquifex aeolicus} Back     alignment and structure
>1ve1_A O-acetylserine sulfhydrylase; PLP, transferase, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.45A {Thermus thermophilus} SCOP: c.79.1.1 PDB: 2eco_A* 2ecq_A* 2efy_A* Back     alignment and structure
>1p5j_A L-serine dehydratase; lyase; HET: PLP; 2.50A {Homo sapiens} SCOP: c.79.1.1 PDB: 1pwh_A* 1pwe_A* Back     alignment and structure
>3dwg_A Cysteine synthase B; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} SCOP: c.79.1.0 PDB: 3fgp_A* 3dki_A* 3dwi_A* Back     alignment and structure
>2pqm_A Cysteine synthase; OASS, PLP, lyase; HET: PLP; 1.86A {Entamoeba histolytica} PDB: 3bm5_A* Back     alignment and structure
>2v03_A Cysteine synthase B; pyridoxal phosphate, cysteine biosynthesis, transferase, ENZ kinetics, enzymatic sythesis of novel compounds; HET: LLP CIT; 1.33A {Escherichia coli} PDB: 2bhs_A* 2bht_A* 2jc3_A* Back     alignment and structure
>3l6b_A Serine racemase; pyridoxal phosphate, PLP, isomerase; HET: PLP; 1.50A {Homo sapiens} SCOP: c.79.1.0 PDB: 3l6r_A* 3hmk_A* 3l6c_A* Back     alignment and structure
>1z7w_A Cysteine synthase; transferase; HET: PLP; 2.20A {Arabidopsis thaliana} SCOP: c.79.1.1 PDB: 1z7y_A* 2isq_A* Back     alignment and structure
>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A* Back     alignment and structure
>1y7l_A O-acetylserine sulfhydrylase, O-acetylserine (thiol)-lyase; X-RAY crystallography, sulfhydrylase; HET: LLP; 1.55A {Haemophilus influenzae} SCOP: c.79.1.1 PDB: 3iqg_X* 3iqh_X* 3iqi_X* 1fcj_A* 1oas_A* 1d6s_A* Back     alignment and structure
>1o58_A O-acetylserine sulfhydrylase; TM0665, structural genomics, J protein structure initiative, joint center for structural G transferase; 1.80A {Thermotoga maritima} SCOP: c.79.1.1 PDB: 3fca_A* Back     alignment and structure
>4d9i_A Diaminopropionate ammonia-lyase; fold type II PLP-dependent enzyme, tryptophan synthase beta like PLP-dependent enzymes superfamily; HET: IT1; 2.00A {Escherichia coli} PDB: 4d9g_A* 4d9n_A* 4d9k_A* 4d9m_A* Back     alignment and structure
>1v71_A Serine racemase, hypothetical protein C320.14 in chromosome III; dimer, PLP, isomerase; HET: PLP; 1.70A {Schizosaccharomyces pombe} SCOP: c.79.1.1 PDB: 1wtc_A* 2zpu_A* 2zr8_A* Back     alignment and structure
>1jbq_A B, cystathionine beta-synthase, serine sulfhydrase; fold type II of PLP enzymes, lyase; HET: HEM PLP; 2.60A {Homo sapiens} SCOP: c.79.1.1 PDB: 1m54_A* Back     alignment and structure
>1ve5_A Threonine deaminase; riken structural genomics/Pro initiative, RSGI, structural genomics, lyase; HET: PLP; 2.15A {Thermus thermophilus} SCOP: c.79.1.1 Back     alignment and structure
>3vc3_A Beta-cyanoalnine synthase; beta-cyanoalanine synthase, transferase; HET: C6P; 1.77A {Glycine max} PDB: 3vbe_A* Back     alignment and structure
>3iau_A Threonine deaminase; pyridoxal phosphate, amino-acid biosynthesis, defensive PROT jasmonic acid pathway, jasmonic acid,structural genomics; HET: LLP 15P; 2.35A {Solanum lycopersicum} Back     alignment and structure
>3ss7_X D-serine dehydratase; type II fold, ALFA,beta-elimination, P 5'-phosphate, lyase; HET: PLP; 1.55A {Escherichia coli} PDB: 3ss9_X* 3r0x_A* 3r0z_A Back     alignment and structure
>1tdj_A Biosynthetic threonine deaminase; allostery, cooperative, tetramer, regulation, pyridoxal PHOS isoleucine biosynthesis; HET: PLP; 2.80A {Escherichia coli} SCOP: c.79.1.1 d.58.18.2 d.58.18.2 Back     alignment and structure
>1e5x_A Threonine synthase; threonine biosynthesis, PLP enzyme, S-adenosyl-methionine, allostery; 2.25A {Arabidopsis thaliana} SCOP: c.79.1.1 PDB: 2c2b_A* 2c2g_A* Back     alignment and structure
>1vb3_A Threonine synthase; PLP-dependent enzyme, lyase; HET: KPA; 2.20A {Escherichia coli} SCOP: c.79.1.1 Back     alignment and structure
>1kl7_A Threonine synthase; threonine synthesis, pyridoxal 5-phosphate, beta-family, MON lyase; HET: PLP; 2.70A {Saccharomyces cerevisiae} SCOP: c.79.1.1 Back     alignment and structure
>4f4f_A Threonine synthase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.90A {Brucella melitensis BV} Back     alignment and structure
>3v7n_A Threonine synthase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, lyase; 1.40A {Burkholderia thailandensis} Back     alignment and structure
>1rcu_A Conserved hypothetical protein VT76; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.50A {Thermotoga maritima} SCOP: c.129.1.1 Back     alignment and structure
>1o98_A 2,3-bisphosphoglycerate-independent phosphoglycerate mutase; isomerase, alpha/beta-type structure; HET: 2PG; 1.4A {Bacillus stearothermophilus} SCOP: c.105.1.1 c.76.1.3 PDB: 1ejj_A* 1eqj_A* 1o99_A* 2ify_A Back     alignment and structure
>3igz_B Cofactor-independent phosphoglycerate mutase; glycolysis, cobalt, isomerase; HET: 3PG 2PG; 1.90A {Leishmania mexicana} PDB: 3igy_B* 3nvl_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 325
d1tyza_338 c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate de 1e-05
d1f2da_341 c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate de 2e-05
d1j0aa_325 c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate de 3e-04
>d1tyza_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase {Pseudomonas sp., strain ACP [TaxId: 306]} Length = 338 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: 1-aminocyclopropane-1-carboxylate deaminase
species: Pseudomonas sp., strain ACP [TaxId: 306]

 Score = 43.9 bits (102), Expect = 1e-05
 Identities = 23/71 (32%), Positives = 30/71 (42%), Gaps = 1/71 (1%)

Query: 110 YVVRDDLLHPL-VNGNKARKMDALLPLLEDHIVTDLVTCGGCQSAHATAVAVSCAERGLK 168
           Y  R+D    L   GNK RK++ L+P         LV+ GG QS     VA   A  G+K
Sbjct: 35  YAKREDCNSGLAFGGNKTRKLEYLIPEALAQGCDTLVSIGGIQSNQTRQVAAVAAHLGMK 94

Query: 169 SHLLLRGEQPQ 179
             L+       
Sbjct: 95  CVLVQENWVNY 105
>d1f2da_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase {Yeast (Hansenula saturnus) [TaxId: 4906]} Length = 341 Back     information, alignment and structure
>d1j0aa_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 325 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query325
d1qopb_390 Tryptophan synthase, beta-subunit {Salmonella typh 99.91
d1f2da_341 1-aminocyclopropane-1-carboxylate deaminase {Yeast 99.9
d1tyza_338 1-aminocyclopropane-1-carboxylate deaminase {Pseud 99.9
d1v8za1386 Tryptophan synthase, beta-subunit {Archaeon Pyroco 99.86
d1j0aa_325 1-aminocyclopropane-1-carboxylate deaminase {Archa 99.86
d1p5ja_319 L-serine dehydratase {Human (Homo sapiens) [TaxId: 99.65
d1v7ca_ 351 Threonine synthase {Thermus thermophilus [TaxId: 2 99.54
d1jbqa_355 Cystathionine beta-synthase {Human (Homo sapiens) 99.49
d2bhsa1292 O-acetylserine sulfhydrylase (Cysteine synthase) { 99.48
d1ve1a1302 O-acetylserine sulfhydrylase (Cysteine synthase) { 99.47
d1tdja1331 Threonine deaminase {Escherichia coli [TaxId: 562] 99.37
d1z7wa1320 O-acetylserine sulfhydrylase (Cysteine synthase) { 99.36
d1fcja_302 O-acetylserine sulfhydrylase (Cysteine synthase) { 99.31
d1v71a1318 Hypothetical protein C320.14 (SPCC320.14, SPCC330. 99.3
d1y7la1310 O-acetylserine sulfhydrylase (Cysteine synthase) { 99.29
d1wkva1382 O-acetylserine sulfhydrylase (Cysteine synthase) { 99.26
d1o58a_293 O-acetylserine sulfhydrylase (Cysteine synthase) { 99.25
d1ve5a1310 Threonine deaminase {Thermus thermophilus [TaxId: 99.24
d1e5xa_ 477 Threonine synthase {Mouse-ear cress (Arabidopsis t 99.16
d1rcua_170 Hypothetical protein TM1055 {Thermotoga maritima [ 90.29
d1o98a1234 2,3-Bisphosphoglycerate-independent phosphoglycera 88.28
>d1qopb_ c.79.1.1 (B:) Tryptophan synthase, beta-subunit {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Tryptophan synthase, beta-subunit
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.91  E-value=1.5e-24  Score=207.84  Aligned_cols=176  Identities=16%  Similarity=0.173  Sum_probs=149.0

Q ss_pred             CCCCCCccccccCCCCcCccCCCCccCCCCeEEEEecCCCCCCCCChhHhhHHhhHHHhhhCCCCeEEE-eCcccchHHH
Q 020509           78 HGGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIVTDLVT-CGGCQSAHAT  156 (325)
Q Consensus        78 ~~~g~~~pi~~l~~~tp~l~~~~Ls~~~G~~l~IKRDDL~h~~lgGNK~RKLeylL~dA~~~G~~~LVT-~GG~QSNH~~  156 (325)
                      +|.||||||.+++|++         +.+|++||+|||||+++  |..|.|..-..+..|+++|.+++|+ ++++  ||+.
T Consensus        50 ~~~grpTPL~~~~~Ls---------~~lg~~IylK~E~lnpt--GS~K~R~a~~~i~~A~~~G~~~iv~easaG--N~g~  116 (390)
T d1qopb_          50 NYAGRPTALTKCQNIT---------AGTRTTLYLKREDLLHG--GAHKTNQVLGQALLAKRMGKSEIIAETGAG--QHGV  116 (390)
T ss_dssp             HTTCCSCCEEECHHHH---------TTSSEEEEEEEGGGSTT--SBTHHHHHHHHHHHHHHTTCCEEEEEESSS--HHHH
T ss_pred             hcCCCCchhhEhHhhh---------hhhCCEEEEEEecCCcc--cccchhHHHHHHHHHhhcCCceeeeehhHH--HHHH
Confidence            4889888887777765         44477999999999985  6889999999999999999998887 5554  5999


Q ss_pred             HHHHHHHHhCCeEEEEeccccCCccchhhHHHHhCC-eEEEECCCCccchHHHHHHHHHHh---------cccc------
Q 020509          157 AVAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYG-KVTYVPRTHYAHRIEMLKSYANLV---------AGNN------  220 (325)
Q Consensus       157 AtAaaAa~lGLkcvlvlrge~~~~~tGN~ll~~LlG-~V~~V~r~~y~~kda~~e~~~~~~---------~Gas------  220 (325)
                      |+|++|+++||+|+++|...++..+..|+.+|+++| +|+.|+.+..+++++..++.+++.         .+..      
T Consensus       117 a~A~aaa~~Gl~~~I~mp~~~~~~k~~~v~~m~~~GAeVv~v~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (390)
T d1qopb_         117 ASALASALLGLKCRIYMGAKDVERQSPNVFRMRLMGAEVIPVHSGSATLKDACNEALRDWSGSYETAHYMLGTAAGPHPY  196 (390)
T ss_dssp             HHHHHHHHHTCEEEEEEEHHHHHHCHHHHHHHHHTTCEEEEECSTTSSHHHHHHHHHHHHHHHTTTEEECCCSSCSSTTH
T ss_pred             HHHHHHHhccCceEEeecccccccchHHHHHHHhcCceEEEecCCchhhhHhHHHHHHHHhhhhhhhhhccccccccccc
Confidence            999999999999999998777666778999999999 999999988888888888877765         1111      


Q ss_pred             -cchhhHHHHHHHHHHHhhhhhccccccchhhhhhccCCcEEEEeCCCcchhhhhhhc
Q 020509          221 -GDVVWCNEIFEASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLVLI  277 (325)
Q Consensus       221 -G~vr~~~eI~~qe~~~q~~~~~~~~~~d~~~~l~~~g~~~y~ip~GGSnaiG~lGyi  277 (325)
                       .+++++|+++++|+.+|+.+           ..+..++.+++|.|||||+.|++...
T Consensus       197 ~~~~~~~~~~iG~e~~~q~~~-----------~~g~~pD~vv~~vGgGs~~~G~~~~f  243 (390)
T d1qopb_         197 PTIVREFQRMIGEETKAQILD-----------KEGRLPDAVIACVGGGSNAIGMFADF  243 (390)
T ss_dssp             HHHHHHTTTHHHHHHHHHHHH-----------HHSSCCSEEEEECSSSHHHHHHHGGG
T ss_pred             cccccchhhhhcchhHHHHHH-----------HcCCccceEEecccccchhhheeccc
Confidence             55789999999999999876           46788999999999999999997543
>d1f2da_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase {Yeast (Hansenula saturnus) [TaxId: 4906]} Back     information, alignment and structure
>d1tyza_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase {Pseudomonas sp., strain ACP [TaxId: 306]} Back     information, alignment and structure
>d1v8za1 c.79.1.1 (A:1-386) Tryptophan synthase, beta-subunit {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1j0aa_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1p5ja_ c.79.1.1 (A:) L-serine dehydratase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1v7ca_ c.79.1.1 (A:) Threonine synthase {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1jbqa_ c.79.1.1 (A:) Cystathionine beta-synthase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2bhsa1 c.79.1.1 (A:2-293) O-acetylserine sulfhydrylase (Cysteine synthase) {Escherichia coli, isoform B (CysM) [TaxId: 562]} Back     information, alignment and structure
>d1ve1a1 c.79.1.1 (A:1-302) O-acetylserine sulfhydrylase (Cysteine synthase) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1tdja1 c.79.1.1 (A:5-335) Threonine deaminase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1z7wa1 c.79.1.1 (A:3-322) O-acetylserine sulfhydrylase (Cysteine synthase) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1fcja_ c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cysteine synthase) {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1v71a1 c.79.1.1 (A:6-323) Hypothetical protein C320.14 (SPCC320.14, SPCC330.15c) {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Back     information, alignment and structure
>d1y7la1 c.79.1.1 (A:2-311) O-acetylserine sulfhydrylase (Cysteine synthase) {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1wkva1 c.79.1.1 (A:2-383) O-acetylserine sulfhydrylase (Cysteine synthase) {Archaeon Aeropyrum pernix [TaxId: 56636]} Back     information, alignment and structure
>d1o58a_ c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cysteine synthase) {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1ve5a1 c.79.1.1 (A:2-311) Threonine deaminase {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1e5xa_ c.79.1.1 (A:) Threonine synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1rcua_ c.129.1.1 (A:) Hypothetical protein TM1055 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1o98a1 c.105.1.1 (A:77-310) 2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure